##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM664v1
#!genome-build-accession NCBI_Assembly:GCF_000006645.1
##sequence-region NC_004088.1 1 4600755
##species http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=187410
NC_004088.1	RefSeq	region	1	4600755	.	+	.	ID=id0;Dbxref=taxon:187410;Is_circular=true;Name=ANONYMOUS;gbkey=Src;genome=chromosome;mol_type=genomic DNA;strain=KIM10+
NC_004088.1	RefSeq	gene	21	461	.	-	.	ID=gene0;Name=Y_RS00005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00005;old_locus_tag=y0001
NC_004088.1	Protein Homology	CDS	21	461	.	-	0	ID=cds0;Parent=gene0;Dbxref=Genbank:WP_002212258.1;Name=WP_002212258.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=FMN-binding protein MioC;protein_id=WP_002212258.1;transl_table=11
NC_004088.1	RefSeq	gene	554	1015	.	-	.	ID=gene1;Name=Y_RS00010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00010;old_locus_tag=y0002
NC_004088.1	Protein Homology	CDS	554	1015	.	-	0	ID=cds1;Parent=gene1;Dbxref=Genbank:WP_002212257.1;Name=WP_002212257.1;Note=transcriptional repressor of asnA which codes for aspartate-ammonia ligase;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002212257.1;transl_table=11
NC_004088.1	RefSeq	gene	1185	2177	.	+	.	ID=gene2;Name=Y_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00015;old_locus_tag=y0003
NC_004088.1	Protein Homology	CDS	1185	2177	.	+	0	ID=cds2;Parent=gene2;Dbxref=Genbank:WP_002212256.1;Name=WP_002212256.1;Note=catalyzes the formation of asparagine from aspartate and ammonia;gbkey=CDS;product=aspartate--ammonia ligase;protein_id=WP_002212256.1;transl_table=11
NC_004088.1	RefSeq	gene	2276	3742	.	-	.	ID=gene3;Name=Y_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00020;old_locus_tag=y0004
NC_004088.1	Protein Homology	CDS	2276	3742	.	-	0	ID=cds3;Parent=gene3;Dbxref=Genbank:WP_002212255.1;Name=WP_002212255.1;Note=contains a von Willibrand factor type A domain%3B stimulates the ATPase activity of RavA;gbkey=CDS;product=protein ViaA;protein_id=WP_002212255.1;transl_table=11
NC_004088.1	RefSeq	gene	3746	5299	.	-	.	ID=gene4;Name=Y_RS00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00025;old_locus_tag=y0005
NC_004088.1	Protein Homology	CDS	3746	5299	.	-	0	ID=cds4;Parent=gene4;Dbxref=Genbank:WP_002212254.1;Name=WP_002212254.1;Note=interacts with LdcI%2C lysine decarboxylase%3B may be active in late log/ early stationary phase;gbkey=CDS;product=ATPase RavA;protein_id=WP_002212254.1;transl_table=11
NC_004088.1	RefSeq	gene	5573	7441	.	+	.	ID=gene5;Name=trkD;gbkey=Gene;gene=trkD;gene_biotype=protein_coding;locus_tag=Y_RS00030;old_locus_tag=y0006
NC_004088.1	Protein Homology	CDS	5573	7441	.	+	0	ID=cds5;Parent=gene5;Dbxref=Genbank:WP_002212253.1;Name=WP_002212253.1;Note=Responsible for the low-affinity transport of potassium into the cell%3B involved in potassium ion uptake under hyper-osmotic stress at a low pH;gbkey=CDS;gene=trkD;product=low affinity potassium transport system protein kup;protein_id=WP_002212253.1;transl_table=11
NC_004088.1	RefSeq	gene	7646	8065	.	+	.	ID=gene6;Name=Y_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00035;old_locus_tag=y0007
NC_004088.1	Protein Homology	CDS	7646	8065	.	+	0	ID=cds6;Parent=gene6;Dbxref=Genbank:WP_002212252.1;Name=WP_002212252.1;Note=cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source;gbkey=CDS;product=D-ribose pyranase;protein_id=WP_002212252.1;transl_table=11
NC_004088.1	RefSeq	gene	8116	9042	.	+	.	ID=gene7;Name=Y_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00040;old_locus_tag=y0008
NC_004088.1	Protein Homology	CDS	8116	9042	.	+	0	ID=cds7;Parent=gene7;Dbxref=Genbank:WP_002212251.1;Name=WP_002212251.1;Note=catalyzes the formation of D-ribose 5-phosphate from ribose;gbkey=CDS;product=ribokinase;protein_id=WP_002212251.1;transl_table=11
NC_004088.1	RefSeq	gene	9095	9265	.	+	.	ID=gene8;Name=Y_RS00045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00045;old_locus_tag=y0009
NC_004088.1	Protein Homology	CDS	9095	9265	.	+	0	ID=cds8;Parent=gene8;Dbxref=Genbank:WP_002215906.1;Name=WP_002215906.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002215906.1;transl_table=11
NC_004088.1	RefSeq	gene	9262	10686	.	-	.	ID=gene9;Name=Y_RS00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00050;old_locus_tag=y0010
NC_004088.1	Protein Homology	CDS	9262	10686	.	-	0	ID=cds9;Parent=gene9;Dbxref=Genbank:WP_002212250.1;Name=WP_002212250.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002212250.1;transl_table=11
NC_004088.1	RefSeq	gene	10766	11455	.	-	.	ID=gene10;Name=Y_RS00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00055;old_locus_tag=y0011
NC_004088.1	Protein Homology	CDS	10766	11455	.	-	0	ID=cds10;Parent=gene10;Dbxref=Genbank:WP_002215905.1;Name=WP_002215905.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_002215905.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	11566	17160	.	+	.	ID=id1;gbkey=repeat_region
NC_004088.1	RefSeq	gene	12012	13560	.	+	.	ID=gene11;Name=Y_RS00065;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS00065;old_locus_tag=yr001
NC_004088.1	RefSeq	rRNA	12012	13560	.	+	.	ID=rna0;Parent=gene11;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	exon	12012	13560	.	+	.	ID=id2;Parent=rna0;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	gene	13694	13769	.	+	.	ID=gene12;Name=Y_RS00070;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS00070;old_locus_tag=yt001
NC_004088.1	tRNAscan-SE	tRNA	13694	13769	.	+	.	ID=rna1;Parent=gene12;anticodon=(pos:13728..13730);gbkey=tRNA;product=tRNA-Glu
NC_004088.1	tRNAscan-SE	exon	13694	13769	.	+	.	ID=id3;Parent=rna1;anticodon=(pos:13728..13730);gbkey=tRNA;product=tRNA-Glu
NC_004088.1	RefSeq	gene	14013	16946	.	+	.	ID=gene13;Name=Y_RS00075;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS00075;old_locus_tag=yr002
NC_004088.1	RefSeq	rRNA	14013	16946	.	+	.	ID=rna2;Parent=gene13;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	exon	14013	16946	.	+	.	ID=id4;Parent=rna2;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	gene	17038	17153	.	+	.	ID=gene14;Name=Y_RS00080;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS00080;old_locus_tag=yr003
NC_004088.1	cmsearch	rRNA	17038	17153	.	+	.	ID=rna3;Parent=gene14;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	cmsearch	exon	17038	17153	.	+	.	ID=id5;Parent=rna3;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	RefSeq	gene	17169	17244	.	+	.	ID=gene15;Name=Y_RS00085;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS00085;old_locus_tag=yt002
NC_004088.1	tRNAscan-SE	tRNA	17169	17244	.	+	.	ID=rna4;Parent=gene15;anticodon=(pos:17202..17204);gbkey=tRNA;product=tRNA-Thr
NC_004088.1	tRNAscan-SE	exon	17169	17244	.	+	.	ID=id6;Parent=rna4;anticodon=(pos:17202..17204);gbkey=tRNA;product=tRNA-Thr
NC_004088.1	RefSeq	repeat_region	17277	17410	.	+	.	ID=id7;gbkey=repeat_region
NC_004088.1	RefSeq	gene	17285	17400	.	+	.	ID=gene16;Name=Y_RS00090;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS00090;old_locus_tag=yr004
NC_004088.1	cmsearch	rRNA	17285	17400	.	+	.	ID=rna5;Parent=gene16;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	cmsearch	exon	17285	17400	.	+	.	ID=id8;Parent=rna5;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	RefSeq	gene	17800	18072	.	-	.	ID=gene17;Name=Y_RS00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00095
NC_004088.1	Protein Homology	CDS	17800	18072	.	-	0	ID=cds11;Parent=gene17;Dbxref=Genbank:WP_002430138.1;Name=WP_002430138.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002430138.1;transl_table=11
NC_004088.1	RefSeq	gene	18140	19069	.	+	.	ID=gene18;Name=Y_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00100;old_locus_tag=y0013
NC_004088.1	Protein Homology	CDS	18140	19069	.	+	0	ID=cds12;Parent=gene18;Dbxref=Genbank:WP_002212076.1;Name=WP_002212076.1;Note=catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis;gbkey=CDS;product=homoserine O-succinyltransferase;protein_id=WP_002212076.1;transl_table=11
NC_004088.1	RefSeq	gene	19489	21087	.	+	.	ID=gene19;Name=Y_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00105;old_locus_tag=y0015
NC_004088.1	Protein Homology	CDS	19489	21087	.	+	0	ID=cds13;Parent=gene19;Dbxref=Genbank:WP_002212077.1;Name=WP_002212077.1;Note=Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle;gbkey=CDS;product=malate synthase;protein_id=WP_002212077.1;transl_table=11
NC_004088.1	RefSeq	gene	21134	22441	.	+	.	ID=gene20;Name=Y_RS00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00110;old_locus_tag=y0016
NC_004088.1	Protein Homology	CDS	21134	22441	.	+	0	ID=cds14;Parent=gene20;Dbxref=Genbank:WP_002212078.1;Name=WP_002212078.1;gbkey=CDS;product=isocitrate lyase;protein_id=WP_002212078.1;transl_table=11
NC_004088.1	RefSeq	gene	22514	24241	.	+	.	ID=gene21;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=protein_coding;locus_tag=Y_RS00115;old_locus_tag=y0018
NC_004088.1	Protein Homology	CDS	22514	24241	.	+	0	ID=cds15;Parent=gene21;Dbxref=Genbank:WP_002212079.1;Name=WP_002212079.1;Note=catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity%3B unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol;gbkey=CDS;gene=aceK;product=isocitrate dehydrogenase;protein_id=WP_002212079.1;transl_table=11
NC_004088.1	RefSeq	gene	24361	24873	.	-	.	ID=gene22;Name=Y_RS00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00120;old_locus_tag=y0019
NC_004088.1	Protein Homology	CDS	24361	24873	.	-	0	ID=cds16;Parent=gene22;Dbxref=Genbank:WP_002355282.1;Name=WP_002355282.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_002355282.1;transl_table=11
NC_004088.1	RefSeq	gene	24858	25205	.	-	.	ID=gene23;Name=Y_RS00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00125
NC_004088.1	Protein Homology	CDS	24858	25205	.	-	0	ID=cds17;Parent=gene23;Dbxref=Genbank:WP_002228764.1;Name=WP_002228764.1;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_002228764.1;transl_table=11
NC_004088.1	RefSeq	gene	25420	29115	.	+	.	ID=gene24;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=Y_RS00130;old_locus_tag=y0020
NC_004088.1	Protein Homology	CDS	25420	29115	.	+	0	ID=cds18;Parent=gene24;Dbxref=Genbank:WP_002212080.1;Name=WP_002212080.1;Note=one of two methionine synthases in Escherichia coli%3B MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine%3B requires zinc for activity;gbkey=CDS;gene=metH;product=B12-dependent methionine synthase;protein_id=WP_002212080.1;transl_table=11
NC_004088.1	RefSeq	gene	29211	34118	.	-	.	ID=gene25;Name=Y_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00135;old_locus_tag=y0021
NC_004088.1	Protein Homology	CDS	29211	34118	.	-	0	ID=cds19;Parent=gene25;Dbxref=Genbank:WP_002212081.1;Name=WP_002212081.1;gbkey=CDS;product=hemolysin;protein_id=WP_002212081.1;transl_table=11
NC_004088.1	RefSeq	gene	34188	35687	.	-	.	ID=gene26;Name=Y_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00140
NC_004088.1	Protein Homology	CDS	34188	35687	.	-	0	ID=cds20;Parent=gene26;Dbxref=Genbank:WP_002228765.1;Name=WP_002228765.1;gbkey=CDS;product=hemolysin activation protein;protein_id=WP_002228765.1;transl_table=11
NC_004088.1	RefSeq	gene	36445	37830	.	-	.	ID=gene27;Name=Y_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00150;old_locus_tag=y0023
NC_004088.1	Protein Homology	CDS	36445	37830	.	-	0	ID=cds21;Parent=gene27;Dbxref=Genbank:WP_002212084.1;Name=WP_002212084.1;Note=catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%3B functions in amino acid biosynthesis%3B lysine sensitive;gbkey=CDS;product=aspartate kinase;protein_id=WP_002212084.1;transl_table=11
NC_004088.1	RefSeq	gene	38200	39846	.	+	.	ID=gene28;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=Y_RS00155;old_locus_tag=y0024
NC_004088.1	Protein Homology	CDS	38200	39846	.	+	0	ID=cds22;Parent=gene28;Dbxref=Genbank:WP_002212085.1;Name=WP_002212085.1;Note=functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family;gbkey=CDS;gene=pgi;product=glucose-6-phosphate isomerase;protein_id=WP_002212085.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	39737	39755	.	-	.	ID=id9;Dbxref=CollecTF:EXPSITE_00000c80;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y0025;gbkey=protein_bind;gene=pgi
NC_004088.1	RefSeq	protein_binding_site	39814	39832	.	+	.	ID=id10;Dbxref=CollecTF:EXPSITE_00000c70;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y0025;gbkey=protein_bind;gene=pgi
NC_004088.1	RefSeq	gene	39981	40388	.	+	.	ID=gene29;Name=Y_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00160;old_locus_tag=y0025
NC_004088.1	Protein Homology	CDS	39981	40388	.	+	0	ID=cds23;Parent=gene29;Dbxref=Genbank:WP_002212086.1;Name=WP_002212086.1;gbkey=CDS;product=protein PsiE;protein_id=WP_002212086.1;transl_table=11
NC_004088.1	RefSeq	gene	40531	41421	.	-	.	ID=gene30;Name=malG;gbkey=Gene;gene=malG;gene_biotype=protein_coding;locus_tag=Y_RS00165;old_locus_tag=y0026
NC_004088.1	Protein Homology	CDS	40531	41421	.	-	0	ID=cds24;Parent=gene30;Dbxref=Genbank:WP_002212087.1;Name=WP_002212087.1;Note=with MalKFE is involved in the transport of maltose into the cell;gbkey=CDS;gene=malG;product=maltose ABC transporter permease;protein_id=WP_002212087.1;transl_table=11
NC_004088.1	RefSeq	gene	41435	43012	.	-	.	ID=gene31;Name=malF;gbkey=Gene;gene=malF;gene_biotype=protein_coding;locus_tag=Y_RS00170;old_locus_tag=y0027
NC_004088.1	Protein Homology	CDS	41435	43012	.	-	0	ID=cds25;Parent=gene31;Dbxref=Genbank:WP_002212088.1;Name=WP_002212088.1;Note=with MalKGE is involved in maltose transport into the cell;gbkey=CDS;gene=malF;product=maltose transporter membrane protein;protein_id=WP_002212088.1;transl_table=11
NC_004088.1	RefSeq	gene	43199	44410	.	-	.	ID=gene32;Name=malE;gbkey=Gene;gene=malE;gene_biotype=protein_coding;locus_tag=Y_RS00175;old_locus_tag=y0028
NC_004088.1	Protein Homology	CDS	43199	44410	.	-	0	ID=cds26;Parent=gene32;Dbxref=Genbank:WP_002212089.1;Name=WP_002212089.1;Note=functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis;gbkey=CDS;gene=malE;product=maltose ABC transporter substrate-binding protein;protein_id=WP_002212089.1;transl_table=11
NC_004088.1	RefSeq	gene	44998	45234	.	+	.	ID=gene33;Name=Y_RS00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00180;old_locus_tag=y0029
NC_004088.1	Protein Homology	CDS	44998	45234	.	+	0	ID=cds27;Parent=gene33;Dbxref=Genbank:WP_002221973.1;Name=WP_002221973.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002221973.1;transl_table=11
NC_004088.1	RefSeq	gene	45238	46347	.	+	.	ID=gene34;Name=Y_RS00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00185;old_locus_tag=y0031
NC_004088.1	Protein Homology	CDS	45238	46347	.	+	0	ID=cds28;Parent=gene34;Dbxref=Genbank:WP_002212091.1;Name=WP_002212091.1;Note=with malEFG is involved in import of maltose/maltodextrin;gbkey=CDS;product=maltose/maltodextrin import ATP-binding protein MalK;protein_id=WP_002212091.1;transl_table=11
NC_004088.1	RefSeq	gene	46418	47689	.	+	.	ID=gene35;Name=lamB;gbkey=Gene;gene=lamB;gene_biotype=protein_coding;locus_tag=Y_RS00190;old_locus_tag=y0032
NC_004088.1	Protein Homology	CDS	46418	47689	.	+	0	ID=cds29;Parent=gene35;Dbxref=Genbank:WP_002212092.1;Name=WP_002212092.1;Note=porin involved in the transport of maltose and maltodextrins;gbkey=CDS;gene=lamB;product=maltoporin;protein_id=WP_002212092.1;transl_table=11
NC_004088.1	RefSeq	gene	47930	48841	.	+	.	ID=gene36;Name=Y_RS00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00195;old_locus_tag=y0033
NC_004088.1	Protein Homology	CDS	47930	48841	.	+	0	ID=cds30;Parent=gene36;Dbxref=Genbank:WP_002212093.1;Name=WP_002212093.1;gbkey=CDS;product=maltose operon protein;protein_id=WP_002212093.1;transl_table=11
NC_004088.1	RefSeq	gene	49312	49590	.	+	.	ID=gene37;Name=Y_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00200
NC_004088.1	Protein Homology	CDS	49312	49590	.	+	0	ID=cds31;Parent=gene37;Dbxref=Genbank:WP_002212095.1;Name=WP_002212095.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212095.1;transl_table=11
NC_004088.1	RefSeq	gene	49742	50260	.	-	.	ID=gene38;Name=Y_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00205;old_locus_tag=y0036
NC_004088.1	Protein Homology	CDS	49742	50260	.	-	0	ID=cds32;Parent=gene38;Dbxref=Genbank:WP_002212097.1;Name=WP_002212097.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212097.1;transl_table=11
NC_004088.1	RefSeq	gene	50784	51281	.	+	.	ID=gene39;Name=Y_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00210;old_locus_tag=y0037
NC_004088.1	Protein Homology	CDS	50784	51281	.	+	0	ID=cds33;Parent=gene39;Dbxref=Genbank:WP_002212098.1;Name=WP_002212098.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002212098.1;transl_table=11
NC_004088.1	RefSeq	gene	51349	52830	.	+	.	ID=gene40;Name=Y_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00215;old_locus_tag=y0038
NC_004088.1	Protein Homology	CDS	51349	52830	.	+	0	ID=cds34;Parent=gene40;Dbxref=Genbank:WP_002212099.1;Name=WP_002212099.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002212099.1;transl_table=11
NC_004088.1	RefSeq	gene	52837	53277	.	+	.	ID=gene41;Name=Y_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00220;old_locus_tag=y0039
NC_004088.1	Protein Homology	CDS	52837	53277	.	+	0	ID=cds35;Parent=gene41;Dbxref=Genbank:WP_002212100.1;Name=WP_002212100.1;gbkey=CDS;product=lysozyme;protein_id=WP_002212100.1;transl_table=11
NC_004088.1	RefSeq	gene	53277	54389	.	+	.	ID=gene42;Name=Y_RS00225;end_range=54389,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS00225;old_locus_tag=y0040;partial=true;pseudo=true
NC_004088.1	Protein Homology	CDS	53277	54389	.	+	0	ID=cds36;Parent=gene42;end_range=54389,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=type VI secretion protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	54360	57099	.	+	.	ID=id11;gbkey=repeat_region
NC_004088.1	RefSeq	region	54361	54622	.	-	.	ID=id12;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	region	54623	56576	.	-	.	ID=id13;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	54689	55468	.	-	.	ID=gene43;Name=Y_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00230;old_locus_tag=y0042
NC_004088.1	Protein Homology	CDS	54689	55468	.	-	0	ID=cds37;Parent=gene43;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	55468	56490	.	-	.	ID=gene44;Name=Y_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00235;old_locus_tag=y0043
NC_004088.1	Protein Homology	CDS	55468	56490	.	-	0	ID=cds38;Parent=gene44;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	56560	56985	.	+	.	ID=gene45;Name=Y_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00240;old_locus_tag=y0044
NC_004088.1	Protein Homology	CDS	56560	56985	.	+	0	ID=cds39;Parent=gene45;Dbxref=Genbank:WP_002231724.1;Name=WP_002231724.1;gbkey=CDS;product=transposase;protein_id=WP_002231724.1;transl_table=11
NC_004088.1	RefSeq	region	56575	57091	.	+	.	ID=id14;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	57193	57432	.	-	.	ID=gene46;Name=Y_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00245;old_locus_tag=y0045
NC_004088.1	Protein Homology	CDS	57193	57432	.	-	0	ID=cds40;Parent=gene46;Dbxref=Genbank:WP_002208953.1;Name=WP_002208953.1;Note=interacts with FisZ and is necessary for Z-ring formation;gbkey=CDS;product=cell division protein ZapB;protein_id=WP_002208953.1;transl_table=11
NC_004088.1	RefSeq	gene	57811	58050	.	+	.	ID=gene47;Name=Y_RS00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00250
NC_004088.1	Protein Homology	CDS	57811	58050	.	+	0	ID=cds41;Parent=gene47;Dbxref=Genbank:WP_002215868.1;Name=WP_002215868.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215868.1;transl_table=11
NC_004088.1	RefSeq	gene	58060	58908	.	+	.	ID=gene48;Name=Y_RS00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00255;old_locus_tag=y0046
NC_004088.1	Protein Homology	CDS	58060	58908	.	+	0	ID=cds42;Parent=gene48;Dbxref=Genbank:WP_002208954.1;Name=WP_002208954.1;Note=involved in the transport of glycerol into the cell;gbkey=CDS;product=glycerol uptake facilitator protein;protein_id=WP_002208954.1;transl_table=11
NC_004088.1	RefSeq	gene	59085	60608	.	+	.	ID=gene49;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=Y_RS00260;old_locus_tag=y0047
NC_004088.1	Protein Homology	CDS	59085	60608	.	+	0	ID=cds43;Parent=gene49;Dbxref=Genbank:WP_002218876.1;Name=WP_002218876.1;Note=Converts glycerol and ADP to glycerol-3-phosphate and ADP;gbkey=CDS;gene=glpK;product=glycerol kinase;protein_id=WP_002218876.1;transl_table=11
NC_004088.1	RefSeq	gene	60845	61855	.	+	.	ID=gene50;Name=Y_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00265;old_locus_tag=y0048
NC_004088.1	Protein Homology	CDS	60845	61855	.	+	0	ID=cds44;Parent=gene50;Dbxref=Genbank:WP_002223912.1;Name=WP_002223912.1;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_002223912.1;transl_table=11
NC_004088.1	RefSeq	gene	62010	62756	.	+	.	ID=gene51;Name=Y_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00270;old_locus_tag=y0049
NC_004088.1	Protein Homology	CDS	62010	62756	.	+	0	ID=cds45;Parent=gene51;Dbxref=Genbank:WP_002208956.1;Name=WP_002208956.1;gbkey=CDS;product=ferredoxin-NADP reductase;protein_id=WP_002208956.1;transl_table=11
NC_004088.1	RefSeq	gene	63097	63531	.	-	.	ID=gene52;Name=Y_RS00275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00275;old_locus_tag=y0050
NC_004088.1	Protein Homology	CDS	63097	63531	.	-	0	ID=cds46;Parent=gene52;Dbxref=Genbank:WP_002208957.1;Name=WP_002208957.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208957.1;transl_table=11
NC_004088.1	RefSeq	gene	63679	64314	.	+	.	ID=gene53;Name=Y_RS00280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00280;old_locus_tag=y0051
NC_004088.1	Protein Homology	CDS	63679	64314	.	+	0	ID=cds47;Parent=gene53;Dbxref=Genbank:WP_002223910.1;Name=WP_002223910.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002223910.1;transl_table=11
NC_004088.1	RefSeq	gene	64443	65210	.	+	.	ID=gene54;Name=Y_RS00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00285;old_locus_tag=y0052
NC_004088.1	Protein Homology	CDS	64443	65210	.	+	0	ID=cds48;Parent=gene54;Dbxref=Genbank:WP_002208959.1;Name=WP_002208959.1;Note=Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate;gbkey=CDS;product=triosephosphate isomerase;protein_id=WP_002208959.1;transl_table=11
NC_004088.1	RefSeq	gene	65442	66677	.	-	.	ID=gene55;Name=Y_RS00290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00290;old_locus_tag=y0053
NC_004088.1	Protein Homology	CDS	65442	66677	.	-	0	ID=cds49;Parent=gene55;Dbxref=Genbank:WP_002208960.1;Name=WP_002208960.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002208960.1;transl_table=11
NC_004088.1	RefSeq	gene	66814	67551	.	+	.	ID=gene56;Name=Y_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00295;old_locus_tag=y0054
NC_004088.1	Protein Homology	CDS	66814	67551	.	+	0	ID=cds50;Parent=gene56;Dbxref=Genbank:WP_002208961.1;Name=WP_002208961.1;gbkey=CDS;product=GlcNAc-PI de-N-acetylase;protein_id=WP_002208961.1;transl_table=11
NC_004088.1	RefSeq	gene	67548	68261	.	+	.	ID=gene57;Name=Y_RS00300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00300;old_locus_tag=y0055
NC_004088.1	Protein Homology	CDS	67548	68261	.	+	0	ID=cds51;Parent=gene57;Dbxref=Genbank:WP_002208962.1;Name=WP_002208962.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208962.1;transl_table=11
NC_004088.1	RefSeq	gene	68327	69754	.	+	.	ID=gene58;Name=Y_RS00305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00305;old_locus_tag=y0056
NC_004088.1	Protein Homology	CDS	68327	69754	.	+	0	ID=cds52;Parent=gene58;Dbxref=Genbank:WP_002208963.1;Name=WP_002208963.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208963.1;transl_table=11
NC_004088.1	RefSeq	gene	69989	70648	.	+	.	ID=gene59;Name=Y_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00310;old_locus_tag=y0057
NC_004088.1	Protein Homology	CDS	69989	70648	.	+	0	ID=cds53;Parent=gene59;Dbxref=Genbank:WP_032465774.1;Name=WP_032465774.1;gbkey=CDS;product=molybdenum ABC transporter substrate-binding protein;protein_id=WP_032465774.1;transl_table=11
NC_004088.1	RefSeq	gene	70898	71887	.	-	.	ID=gene60;Name=Y_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00315;old_locus_tag=y0058
NC_004088.1	Protein Homology	CDS	70898	71887	.	-	0	ID=cds54;Parent=gene60;Dbxref=Genbank:WP_002208965.1;Name=WP_002208965.1;gbkey=CDS;product=sulfate transporter subunit;protein_id=WP_002208965.1;transl_table=11
NC_004088.1	RefSeq	gene	72108	73091	.	-	.	ID=gene61;Name=Y_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00320;old_locus_tag=y0059
NC_004088.1	Protein Homology	CDS	72108	73091	.	-	0	ID=cds55;Parent=gene61;Dbxref=Genbank:WP_002208966.1;Name=WP_002208966.1;Note=catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis;gbkey=CDS;product=ATP-dependent 6-phosphofructokinase;protein_id=WP_002208966.1;transl_table=11
NC_004088.1	RefSeq	gene	73309	74211	.	-	.	ID=gene62;Name=fieF;gbkey=Gene;gene=fieF;gene_biotype=protein_coding;gene_synonym=yiiP;locus_tag=Y_RS00325;old_locus_tag=y0060
NC_004088.1	Protein Homology	CDS	73309	74211	.	-	0	ID=cds56;Parent=gene62;Dbxref=Genbank:WP_002208967.1;Name=WP_002208967.1;Note=member of cation diffusion facilitator family%3B CDF%3B membrane-bound%3B induced by both zinc and iron%2C but does not induce resistance to zinc%3B can transport zinc(II) in a proton-dependent manner%3B instead this protein induces iron resistance%3B forms dimers;gbkey=CDS;gene=fieF;product=cation-efflux pump FieF;protein_id=WP_002208967.1;transl_table=11
NC_004088.1	RefSeq	gene	74773	75732	.	-	.	ID=gene63;Name=Y_RS00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00330;old_locus_tag=y0062
NC_004088.1	Protein Homology	CDS	74773	75732	.	-	0	ID=cds57;Parent=gene63;Dbxref=Genbank:WP_002208968.1;Name=WP_002208968.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208968.1;transl_table=11
NC_004088.1	RefSeq	gene	76410	76898	.	-	.	ID=gene64;Name=cpxP;gbkey=Gene;gene=cpxP;gene_biotype=protein_coding;locus_tag=Y_RS00335;old_locus_tag=y0066
NC_004088.1	Protein Homology	CDS	76410	76898	.	-	0	ID=cds58;Parent=gene64;Dbxref=Genbank:WP_002208969.1;Name=WP_002208969.1;Note=repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA%3B CpxP is degraded by DegP protease especially in the presence of misfolded substrates;gbkey=CDS;gene=cpxP;product=universal stress protein;protein_id=WP_002208969.1;transl_table=11
NC_004088.1	RefSeq	gene	77072	77770	.	+	.	ID=gene65;Name=Y_RS00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00340;old_locus_tag=y0067
NC_004088.1	Protein Homology	CDS	77072	77770	.	+	0	ID=cds59;Parent=gene65;Dbxref=Genbank:WP_002208970.1;Name=WP_002208970.1;Note=response regulator in two-component regulatory system with CpxA%3B part of the envelope stress response system;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002208970.1;transl_table=11
NC_004088.1	RefSeq	gene	77767	79143	.	+	.	ID=gene66;Name=cpxA;gbkey=Gene;gene=cpxA;gene_biotype=protein_coding;locus_tag=Y_RS00345;old_locus_tag=y0069
NC_004088.1	Protein Homology	CDS	77767	79143	.	+	0	ID=cds60;Parent=gene66;Dbxref=Genbank:WP_002208971.1;Name=WP_002208971.1;Note=part of two-component CpxA/CpxR system%3B senses envelope stress%3B upregulates a number of periplasmic folding and trafficking factors;gbkey=CDS;gene=cpxA;product=two-component system sensor histidine kinase;protein_id=WP_002208971.1;transl_table=11
NC_004088.1	RefSeq	gene	79192	80256	.	-	.	ID=gene67;Name=Y_RS00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00350;old_locus_tag=y0070
NC_004088.1	Protein Homology	CDS	79192	80256	.	-	0	ID=cds61;Parent=gene67;Dbxref=Genbank:WP_002208972.1;Name=WP_002208972.1;Note=regulates genes involved in the repair of alkylated DNA%3B repairs DNA containing 6-O-methylguanine;gbkey=CDS;product=O6-methylguanine-DNA methyltransferase;protein_id=WP_002208972.1;transl_table=11
NC_004088.1	RefSeq	gene	80445	80933	.	+	.	ID=gene68;Name=Y_RS00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00355;old_locus_tag=y0071
NC_004088.1	Protein Homology	CDS	80445	80933	.	+	0	ID=cds62;Parent=gene68;Dbxref=Genbank:WP_002208973.1;Name=WP_002208973.1;Note=member of the SPOUT superfamily of RNA methyltransferases;gbkey=CDS;product=tRNA (cytidine(34)-2'-O)-methyltransferase;protein_id=WP_002208973.1;transl_table=11
NC_004088.1	RefSeq	gene	81056	81877	.	-	.	ID=gene69;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=Y_RS00360;old_locus_tag=y0072
NC_004088.1	Protein Homology	CDS	81056	81877	.	-	0	ID=cds63;Parent=gene69;Dbxref=Genbank:WP_002208974.1;Name=WP_002208974.1;Note=catalyzes the O-acetylation of serine;gbkey=CDS;gene=cysE;product=serine acetyltransferase;protein_id=WP_002208974.1;transl_table=11
NC_004088.1	RefSeq	gene	81943	82083	.	-	.	ID=gene70;Name=Y_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00365
NC_004088.1	Protein Homology	CDS	81943	82083	.	-	0	ID=cds64;Parent=gene70;Dbxref=Genbank:WP_002228146.1;Name=WP_002228146.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228146.1;transl_table=11
NC_004088.1	RefSeq	gene	82143	83162	.	-	.	ID=gene71;Name=Y_RS00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00370;old_locus_tag=y0073
NC_004088.1	Protein Homology	CDS	82143	83162	.	-	0	ID=cds65;Parent=gene71;Dbxref=Genbank:WP_002208975.1;Name=WP_002208975.1;gbkey=CDS;product=glycerol-3-phosphate dehydrogenase [NAD(P)+];protein_id=WP_002208975.1;transl_table=11
NC_004088.1	RefSeq	gene	83162	83638	.	-	.	ID=gene72;Name=Y_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00375;old_locus_tag=y0074
NC_004088.1	Protein Homology	CDS	83162	83638	.	-	0	ID=cds66;Parent=gene72;Dbxref=Genbank:WP_002208976.1;Name=WP_002208976.1;Note=molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA;gbkey=CDS;product=protein-export protein SecB;protein_id=WP_002208976.1;transl_table=11
NC_004088.1	RefSeq	gene	83726	83974	.	-	.	ID=gene73;Name=Y_RS00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00380;old_locus_tag=y0075
NC_004088.1	Protein Homology	CDS	83726	83974	.	-	0	ID=cds67;Parent=gene73;Dbxref=Genbank:WP_002208977.1;Name=WP_002208977.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_002208977.1;transl_table=11
NC_004088.1	RefSeq	gene	84093	84527	.	-	.	ID=gene74;Name=Y_RS00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00385;old_locus_tag=y0076
NC_004088.1	Protein Homology	CDS	84093	84527	.	-	0	ID=cds68;Parent=gene74;Dbxref=Genbank:WP_002208978.1;Name=WP_002208978.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208978.1;transl_table=11
NC_004088.1	RefSeq	gene	84924	86471	.	+	.	ID=gene75;Name=Y_RS00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00390;old_locus_tag=y0077
NC_004088.1	Protein Homology	CDS	84924	86471	.	+	0	ID=cds69;Parent=gene75;Dbxref=Genbank:WP_002208979.1;Name=WP_002208979.1;Note=catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate;gbkey=CDS;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=WP_002208979.1;transl_table=11
NC_004088.1	RefSeq	gene	86481	87851	.	+	.	ID=gene76;Name=Y_RS00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00395;old_locus_tag=y0078
NC_004088.1	Protein Homology	CDS	86481	87851	.	+	0	ID=cds70;Parent=gene76;Dbxref=Genbank:WP_002208980.1;Name=WP_002208980.1;gbkey=CDS;product=peptidase M37;protein_id=WP_002208980.1;transl_table=11
NC_004088.1	RefSeq	gene	87875	88809	.	+	.	ID=gene77;Name=Y_RS00400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS00400;pseudo=true
NC_004088.1	Protein Homology	CDS	87875	88809	.	+	0	ID=cds71;Parent=gene77;exception=annotated by transcript or proteomic data;gbkey=CDS;product=sugar deacetylase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	88947	89972	.	-	.	ID=gene78;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=Y_RS00405;old_locus_tag=y0080
NC_004088.1	Protein Homology	CDS	88947	89972	.	-	0	ID=cds72;Parent=gene78;Dbxref=Genbank:WP_002208981.1;Name=WP_002208981.1;Note=converts threonine and NAD to 1%2C2-amino-3-oxobutanoate and NADH%3B functions in threonine catabolism;gbkey=CDS;gene=tdh;product=L-threonine 3-dehydrogenase;protein_id=WP_002208981.1;transl_table=11
NC_004088.1	RefSeq	gene	89982	91193	.	-	.	ID=gene79;Name=Y_RS00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00410;old_locus_tag=y0081
NC_004088.1	Protein Homology	CDS	89982	91193	.	-	0	ID=cds73;Parent=gene79;Dbxref=Genbank:WP_002208982.1;Name=WP_002208982.1;Note=catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine;gbkey=CDS;product=2-amino-3-ketobutyrate CoA ligase;protein_id=WP_002208982.1;transl_table=11
NC_004088.1	RefSeq	gene	91439	92371	.	+	.	ID=gene80;Name=rfaD;gbkey=Gene;gene=rfaD;gene_biotype=protein_coding;locus_tag=Y_RS00415;old_locus_tag=y0083
NC_004088.1	Protein Homology	CDS	91439	92371	.	+	0	ID=cds74;Parent=gene80;Dbxref=Genbank:WP_002208983.1;Name=WP_002208983.1;Note=catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose;gbkey=CDS;gene=rfaD;product=ADP-L-glycero-D-manno-heptose-6-epimerase;protein_id=WP_002208983.1;transl_table=11
NC_004088.1	RefSeq	gene	92402	93466	.	+	.	ID=gene81;Name=Y_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00420;old_locus_tag=y0084
NC_004088.1	Protein Homology	CDS	92402	93466	.	+	0	ID=cds75;Parent=gene81;Dbxref=Genbank:WP_002208984.1;Name=WP_002208984.1;Note=catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core;gbkey=CDS;product=ADP-heptose--LPS heptosyl transferase;protein_id=WP_002208984.1;transl_table=11
NC_004088.1	RefSeq	gene	93466	94431	.	+	.	ID=gene82;Name=Y_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00425;old_locus_tag=y0085
NC_004088.1	Protein Homology	CDS	93466	94431	.	+	0	ID=cds76;Parent=gene82;Dbxref=Genbank:WP_002208985.1;Name=WP_002208985.1;gbkey=CDS;product=ADP-heptose--LPS heptosyl transferase;protein_id=WP_002208985.1;transl_table=11
NC_004088.1	RefSeq	gene	94851	96128	.	+	.	ID=gene83;Name=Y_RS00430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00430;old_locus_tag=y0086
NC_004088.1	Protein Homology	CDS	94851	96128	.	+	0	ID=cds77;Parent=gene83;Dbxref=Genbank:WP_002208986.1;Name=WP_002208986.1;Note=catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A;gbkey=CDS;product=3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_002208986.1;transl_table=11
NC_004088.1	RefSeq	gene	96129	96911	.	+	.	ID=gene84;Name=Y_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00435;old_locus_tag=y0087
NC_004088.1	Protein Homology	CDS	96129	96911	.	+	0	ID=cds78;Parent=gene84;Dbxref=Genbank:WP_002208987.1;Name=WP_002208987.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_002208987.1;transl_table=11
NC_004088.1	RefSeq	gene	96908	97387	.	+	.	ID=gene85;Name=Y_RS00440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00440;old_locus_tag=y0088
NC_004088.1	Protein Homology	CDS	96908	97387	.	+	0	ID=cds79;Parent=gene85;Dbxref=Genbank:WP_002208988.1;Name=WP_002208988.1;gbkey=CDS;product=phosphopantetheine adenylyltransferase;protein_id=WP_002208988.1;transl_table=11
NC_004088.1	RefSeq	gene	97393	98202	.	-	.	ID=gene86;Name=Y_RS00445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00445;old_locus_tag=y0090
NC_004088.1	Protein Homology	CDS	97393	98202	.	-	0	ID=cds80;Parent=gene86;Dbxref=Genbank:WP_002208989.1;Name=WP_002208989.1;Note=Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases;gbkey=CDS;product=formamidopyrimidine-DNA glycosylase;protein_id=WP_002208989.1;transl_table=11
NC_004088.1	RefSeq	gene	98285	98452	.	-	.	ID=gene87;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=Y_RS00450;old_locus_tag=y0091
NC_004088.1	Protein Homology	CDS	98285	98452	.	-	0	ID=cds81;Parent=gene87;Dbxref=Genbank:WP_002208990.1;Name=WP_002208990.1;Note=in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif;gbkey=CDS;gene=rpmG;product=50S ribosomal protein L33;protein_id=WP_002208990.1;transl_table=11
NC_004088.1	RefSeq	gene	98464	98700	.	-	.	ID=gene88;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=Y_RS00455
NC_004088.1	Protein Homology	CDS	98464	98700	.	-	0	ID=cds82;Parent=gene88;Dbxref=Genbank:WP_002208991.1;Name=WP_002208991.1;Note=required for 70S ribosome assembly;gbkey=CDS;gene=rpmB;product=50S ribosomal protein L28;protein_id=WP_002208991.1;transl_table=11
NC_004088.1	RefSeq	gene	98963	99631	.	-	.	ID=gene89;Name=Y_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00460;old_locus_tag=y0092
NC_004088.1	Protein Homology	CDS	98963	99631	.	-	0	ID=cds83;Parent=gene89;Dbxref=Genbank:WP_002208992.1;Name=WP_002208992.1;gbkey=CDS;product=DNA repair protein RadC;protein_id=WP_002208992.1;transl_table=11
NC_004088.1	RefSeq	gene	99825	101042	.	+	.	ID=gene90;Name=Y_RS00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00465;old_locus_tag=y0093
NC_004088.1	Protein Homology	CDS	99825	101042	.	+	0	ID=cds84;Parent=gene90;Dbxref=Genbank:WP_002208993.1;Name=WP_002208993.1;Note=catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine%2C which is then decarboxylated to form 4'-phosphopantotheine;gbkey=CDS;product=phosphopantothenoylcysteine decarboxylase;protein_id=WP_002208993.1;transl_table=11
NC_004088.1	RefSeq	gene	101020	101478	.	+	.	ID=gene91;Name=Y_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00470;old_locus_tag=y0094
NC_004088.1	Protein Homology	CDS	101020	101478	.	+	0	ID=cds85;Parent=gene91;Dbxref=Genbank:WP_011566231.1;Name=WP_011566231.1;Note=catalyzes the formation of dUMP from dUTP;gbkey=CDS;product=deoxyuridine 5'-triphosphate nucleotidohydrolase;protein_id=WP_011566231.1;transl_table=11
NC_004088.1	RefSeq	gene	101600	102196	.	+	.	ID=gene92;Name=slmA;gbkey=Gene;gene=slmA;gene_biotype=protein_coding;gene_synonym=ttk;locus_tag=Y_RS00475;old_locus_tag=y0095
NC_004088.1	Protein Homology	CDS	101600	102196	.	+	0	ID=cds86;Parent=gene92;Dbxref=Genbank:WP_002208995.1;Name=WP_002208995.1;Note=FtsZ binding protein%3B synthetically lethal with a defect in the Min system%3B this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly;gbkey=CDS;gene=slmA;product=nucleoid occlusion factor SlmA;protein_id=WP_002208995.1;transl_table=11
NC_004088.1	RefSeq	gene	102331	102978	.	-	.	ID=gene93;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=Y_RS00480;old_locus_tag=y0096
NC_004088.1	Protein Homology	CDS	102331	102978	.	-	0	ID=cds87;Parent=gene93;Dbxref=Genbank:WP_002208996.1;Name=WP_002208996.1;Note=involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate;gbkey=CDS;gene=pyrE;product=orotate phosphoribosyltransferase;protein_id=WP_002208996.1;transl_table=11
NC_004088.1	RefSeq	gene	103145	103861	.	-	.	ID=gene94;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=Y_RS00485;old_locus_tag=y0097
NC_004088.1	Protein Homology	CDS	103145	103861	.	-	0	ID=cds88;Parent=gene94;Dbxref=Genbank:WP_002208997.1;Name=WP_002208997.1;Note=RNase PH%3B tRNA nucleotidyltransferase%3B forms hexamers in Bacillus subtilis%3B phosphoroltic 3'-5' exoribonuclease%3B involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs;gbkey=CDS;gene=rph;product=ribonuclease PH;protein_id=WP_002208997.1;transl_table=11
NC_004088.1	RefSeq	gene	103988	104851	.	+	.	ID=gene95;Name=Y_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00490;old_locus_tag=y0098
NC_004088.1	Protein Homology	CDS	103988	104851	.	+	0	ID=cds89;Parent=gene95;Dbxref=Genbank:WP_002208998.1;Name=WP_002208998.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208998.1;transl_table=11
NC_004088.1	RefSeq	gene	105254	105877	.	+	.	ID=gene96;Name=Y_RS00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00495;old_locus_tag=y0099
NC_004088.1	Protein Homology	CDS	105254	105877	.	+	0	ID=cds90;Parent=gene96;Dbxref=Genbank:WP_002215676.1;Name=WP_002215676.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215676.1;transl_table=11
NC_004088.1	RefSeq	gene	105890	107593	.	-	.	ID=gene97;Name=ligB;gbkey=Gene;gene=ligB;gene_biotype=protein_coding;gene_synonym=yicF;locus_tag=Y_RS00500;old_locus_tag=y0100
NC_004088.1	Protein Homology	CDS	105890	107593	.	-	0	ID=cds91;Parent=gene97;Dbxref=Genbank:WP_002215674.1;Name=WP_002215674.1;Note=this ligase is similar to LigA but it lacks the C-terminal BRCT domain%3B catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+;gbkey=CDS;gene=ligB;product=DNA ligase B;protein_id=WP_002215674.1;transl_table=11
NC_004088.1	RefSeq	gene	107994	108617	.	+	.	ID=gene98;Name=Y_RS00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00505;old_locus_tag=y0101
NC_004088.1	Protein Homology	CDS	107994	108617	.	+	0	ID=cds92;Parent=gene98;Dbxref=Genbank:WP_002209000.1;Name=WP_002209000.1;gbkey=CDS;product=guanylate kinase;protein_id=WP_002209000.1;transl_table=11
NC_004088.1	RefSeq	gene	108672	108947	.	+	.	ID=gene99;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=Y_RS00510;old_locus_tag=y0102
NC_004088.1	Protein Homology	CDS	108672	108947	.	+	0	ID=cds93;Parent=gene99;Dbxref=Genbank:WP_002209001.1;Name=WP_002209001.1;Note=Promotes RNA polymerase assembly%3B latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits;gbkey=CDS;gene=rpoZ;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_002209001.1;transl_table=11
NC_004088.1	RefSeq	gene	108967	111075	.	+	.	ID=gene100;Name=Y_RS00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00515;old_locus_tag=y0103
NC_004088.1	Protein Homology	CDS	108967	111075	.	+	0	ID=cds94;Parent=gene100;Dbxref=Genbank:WP_002209002.1;Name=WP_002209002.1;gbkey=CDS;product=bifunctional (p)ppGpp synthetase II/ guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase;protein_id=WP_002209002.1;transl_table=11
NC_004088.1	RefSeq	gene	111114	111773	.	+	.	ID=gene101;Name=Y_RS00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00520;old_locus_tag=y0104
NC_004088.1	Protein Homology	CDS	111114	111773	.	+	0	ID=cds95;Parent=gene101;Dbxref=Genbank:WP_002361605.1;Name=WP_002361605.1;Note=specifically modifies tRNA at position G18;gbkey=CDS;product=tRNA methyltransferase;protein_id=WP_002361605.1;transl_table=11
NC_004088.1	RefSeq	gene	111774	113855	.	+	.	ID=gene102;Name=Y_RS00525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00525;old_locus_tag=y0105
NC_004088.1	Protein Homology	CDS	111774	113855	.	+	0	ID=cds96;Parent=gene102;Dbxref=Genbank:WP_002209004.1;Name=WP_002209004.1;Note=catalyzes branch migration in Holliday junction intermediates;gbkey=CDS;product=ATP-dependent DNA helicase RecG;protein_id=WP_002209004.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	113944	114123	.	+	.	ID=id15;gbkey=repeat_region
NC_004088.1	RefSeq	gene	114221	115435	.	-	.	ID=gene103;Name=Y_RS00530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00530;old_locus_tag=y0106
NC_004088.1	Protein Homology	CDS	114221	115435	.	-	0	ID=cds97;Parent=gene103;Dbxref=Genbank:WP_002209005.1;Name=WP_002209005.1;Note=is involved with the sodium-dependent uptake of glutamate;gbkey=CDS;product=sodium/glutamate symport carrier protein GltS;protein_id=WP_002209005.1;transl_table=11
NC_004088.1	RefSeq	gene	115673	117058	.	+	.	ID=gene104;Name=Y_RS00535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00535;old_locus_tag=y0107
NC_004088.1	Protein Homology	CDS	115673	117058	.	+	0	ID=cds98;Parent=gene104;Dbxref=Genbank:WP_002209006.1;Name=WP_002209006.1;Note=high-affinity transporter for xanthine;gbkey=CDS;product=xanthine permease;protein_id=WP_002209006.1;transl_table=11
NC_004088.1	RefSeq	gene	117206	118915	.	+	.	ID=gene105;Name=Y_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00540;old_locus_tag=y0108
NC_004088.1	Protein Homology	CDS	117206	118915	.	+	0	ID=cds99;Parent=gene105;Dbxref=Genbank:WP_002209007.1;Name=WP_002209007.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209007.1;transl_table=11
NC_004088.1	RefSeq	gene	119050	119973	.	-	.	ID=gene106;Name=Y_RS00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00545;old_locus_tag=y0109
NC_004088.1	Protein Homology	CDS	119050	119973	.	-	0	ID=cds100;Parent=gene106;Dbxref=Genbank:WP_002209008.1;Name=WP_002209008.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209008.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	120155	122108	.	+	.	ID=id16;gbkey=repeat_region
NC_004088.1	RefSeq	region	120157	122106	.	+	.	ID=id17;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	120294	121261	.	+	.	ID=gene107;Name=Y_RS00550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS00550;pseudo=true
NC_004088.1	Protein Homology	CDS	120294	121261	.	+	0	ID=cds101;Parent=gene107;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	121261	122040	.	+	.	ID=gene108;Name=Y_RS00555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00555;old_locus_tag=y0111
NC_004088.1	Protein Homology	CDS	121261	122040	.	+	0	ID=cds102;Parent=gene108;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	122053	122991	.	+	.	ID=gene109;Name=Y_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00560;old_locus_tag=y0112
NC_004088.1	Protein Homology	CDS	122053	122991	.	+	0	ID=cds103;Parent=gene109;Dbxref=Genbank:WP_042468698.1;Name=WP_042468698.1;gbkey=CDS;product=glutathionyl-hydroquinone reductase YqjG;protein_id=WP_042468698.1;transl_table=11
NC_004088.1	RefSeq	gene	123122	124015	.	-	.	ID=gene110;Name=Y_RS00565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00565;old_locus_tag=y0113
NC_004088.1	Protein Homology	CDS	123122	124015	.	-	0	ID=cds104;Parent=gene110;Dbxref=Genbank:WP_002210151.1;Name=WP_002210151.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002210151.1;transl_table=11
NC_004088.1	RefSeq	gene	124277	124981	.	+	.	ID=gene111;Name=Y_RS00570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00570;old_locus_tag=y0115
NC_004088.1	Protein Homology	CDS	124277	124981	.	+	0	ID=cds105;Parent=gene111;Dbxref=Genbank:WP_002210150.1;Name=WP_002210150.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210150.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	125015	125542	.	+	.	ID=id18;gbkey=repeat_region
NC_004088.1	RefSeq	gene	125520	125898	.	-	.	ID=gene112;Name=Y_RS21800;gbkey=Gene;gene_biotype=RNase_P_RNA;locus_tag=Y_RS21800
NC_004088.1	cmsearch	ncRNA	125520	125898	.	-	.	ID=rna6;Parent=gene112;gbkey=ncRNA;ncrna_class=RNase_P_RNA;product=bacterial RNase P
NC_004088.1	cmsearch	exon	125520	125898	.	-	.	ID=id19;Parent=rna6;gbkey=ncRNA;ncrna_class=RNase_P_RNA;product=bacterial RNase P
NC_004088.1	RefSeq	gene	125522	125898	.	-	.	ID=gene113;Name=Y_RS21785;gbkey=Gene;gene_biotype=misc_RNA;locus_tag=Y_RS21785
NC_004088.1	RefSeq	transcript	125522	125898	.	-	.	ID=rna7;Parent=gene113;Note=M1 RNA%3B processes tRNA;gbkey=misc_RNA;product=RNase P%2C RNA component
NC_004088.1	RefSeq	exon	125522	125898	.	-	.	ID=id20;Parent=rna7;Note=M1 RNA%3B processes tRNA;gbkey=misc_RNA;product=RNase P%2C RNA component
NC_004088.1	RefSeq	gene	125918	126817	.	-	.	ID=gene114;Name=Y_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00575;old_locus_tag=y0117
NC_004088.1	Protein Homology	CDS	125918	126817	.	-	0	ID=cds106;Parent=gene114;Dbxref=Genbank:WP_002210149.1;Name=WP_002210149.1;gbkey=CDS;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_002210149.1;transl_table=11
NC_004088.1	RefSeq	gene	126880	128853	.	+	.	ID=gene115;Name=Y_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00580;old_locus_tag=y0118
NC_004088.1	Protein Homology	CDS	126880	128853	.	+	0	ID=cds107;Parent=gene115;Dbxref=Genbank:WP_002228200.1;Name=WP_002228200.1;gbkey=CDS;product=penicillin-binding protein activator LpoA;protein_id=WP_002228200.1;transl_table=11
NC_004088.1	RefSeq	gene	128937	129290	.	+	.	ID=gene116;Name=Y_RS00585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00585;old_locus_tag=y0119
NC_004088.1	Protein Homology	CDS	128937	129290	.	+	0	ID=cds108;Parent=gene116;Dbxref=Genbank:WP_002210147.1;Name=WP_002210147.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210147.1;transl_table=11
NC_004088.1	RefSeq	gene	129561	130151	.	+	.	ID=gene117;Name=Y_RS00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00590;old_locus_tag=y0122
NC_004088.1	Protein Homology	CDS	129561	130151	.	+	0	ID=cds109;Parent=gene117;Dbxref=Genbank:WP_002210146.1;Name=WP_002210146.1;Note=Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein;gbkey=CDS;product=DnaA initiator-associating protein DiaA;protein_id=WP_002210146.1;transl_table=11
NC_004088.1	RefSeq	gene	130162	130737	.	+	.	ID=gene118;Name=Y_RS00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00595;old_locus_tag=y0123
NC_004088.1	Protein Homology	CDS	130162	130737	.	+	0	ID=cds110;Parent=gene118;Dbxref=Genbank:WP_002210145.1;Name=WP_002210145.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210145.1;transl_table=11
NC_004088.1	RefSeq	gene	130944	131669	.	-	.	ID=gene119;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=Y_RS00600;old_locus_tag=y0124
NC_004088.1	Protein Homology	CDS	130944	131669	.	-	0	ID=cds111;Parent=gene119;Dbxref=Genbank:WP_002210144.1;Name=WP_002210144.1;Note=glycosyltransferase%3B polymerizes glycan strands in the peptidoglycan;gbkey=CDS;gene=mtgA;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_002210144.1;transl_table=11
NC_004088.1	RefSeq	gene	131666	132319	.	-	.	ID=gene120;Name=Y_RS00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00605;old_locus_tag=y0125
NC_004088.1	Protein Homology	CDS	131666	132319	.	-	0	ID=cds112;Parent=gene120;Dbxref=Genbank:WP_002210143.1;Name=WP_002210143.1;gbkey=CDS;product=isoprenoid biosynthesis protein;protein_id=WP_002210143.1;transl_table=11
NC_004088.1	RefSeq	gene	132349	132543	.	-	.	ID=gene121;Name=Y_RS00610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00610
NC_004088.1	Protein Homology	CDS	132349	132543	.	-	0	ID=cds113;Parent=gene121;Dbxref=Genbank:WP_002228201.1;Name=WP_002228201.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228201.1;transl_table=11
NC_004088.1	RefSeq	gene	132561	134897	.	-	.	ID=gene122;Name=Y_RS00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00615;old_locus_tag=y0126
NC_004088.1	Protein Homology	CDS	132561	134897	.	-	0	ID=cds114;Parent=gene122;Dbxref=Genbank:WP_002210142.1;Name=WP_002210142.1;Note=sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon%3B hybrid sensory histidine kinase in two-component regulatory system with ArcA;gbkey=CDS;product=PAS domain-containing two-component system sensor histidine kinase/response regulator;protein_id=WP_002210142.1;transl_table=11
NC_004088.1	RefSeq	gene	134965	135180	.	-	.	ID=gene123;Name=Y_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00620
NC_004088.1	Protein Homology	CDS	134965	135180	.	-	0	ID=cds115;Parent=gene123;Dbxref=Genbank:WP_002216211.1;Name=WP_002216211.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216211.1;transl_table=11
NC_004088.1	RefSeq	gene	135161	136084	.	-	.	ID=gene124;Name=Y_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00625;old_locus_tag=y0127
NC_004088.1	Protein Homology	CDS	135161	136084	.	-	0	ID=cds116;Parent=gene124;Dbxref=Genbank:WP_002210140.1;Name=WP_002210140.1;gbkey=CDS;product=radical SAM protein;protein_id=WP_002210140.1;transl_table=11
NC_004088.1	RefSeq	gene	136907	141364	.	+	.	ID=gene125;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=Y_RS00630;old_locus_tag=y0128
NC_004088.1	Protein Homology	CDS	136907	141364	.	+	0	ID=cds117;Parent=gene125;Dbxref=Genbank:WP_002228691.1;Name=WP_002228691.1;Note=catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate;gbkey=CDS;gene=gltB;product=glutamate synthase subunit alpha;protein_id=WP_002228691.1;transl_table=11
NC_004088.1	RefSeq	gene	141374	142792	.	+	.	ID=gene126;Name=Y_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00635;old_locus_tag=y0129
NC_004088.1	Protein Homology	CDS	141374	142792	.	+	0	ID=cds118;Parent=gene126;Dbxref=Genbank:WP_011055198.1;Name=WP_011055198.1;gbkey=CDS;product=glutamate synthase subunit beta;protein_id=WP_011055198.1;transl_table=11
NC_004088.1	RefSeq	gene	143233	143718	.	+	.	ID=gene127;Name=Y_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00640;old_locus_tag=y0130
NC_004088.1	Protein Homology	CDS	143233	143718	.	+	0	ID=cds119;Parent=gene127;Dbxref=Genbank:WP_002224291.1;Name=WP_002224291.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224291.1;transl_table=11
NC_004088.1	RefSeq	gene	143871	144386	.	-	.	ID=gene128;Name=Y_RS00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00645;old_locus_tag=y0131
NC_004088.1	Protein Homology	CDS	143871	144386	.	-	0	ID=cds120;Parent=gene128;Dbxref=Genbank:WP_002216203.1;Name=WP_002216203.1;gbkey=CDS;product=peptidase;protein_id=WP_002216203.1;transl_table=11
NC_004088.1	RefSeq	gene	144392	145033	.	-	.	ID=gene129;Name=sspA;gbkey=Gene;gene=sspA;gene_biotype=protein_coding;locus_tag=Y_RS00650;old_locus_tag=y0132
NC_004088.1	Protein Homology	CDS	144392	145033	.	-	0	ID=cds121;Parent=gene129;Dbxref=Genbank:WP_002210135.1;Name=WP_002210135.1;Note=transcriptional activator%3B required for activation of bacteriophage P1 late promoter%3B induced by starvation;gbkey=CDS;gene=sspA;product=stringent starvation protein A;protein_id=WP_002210135.1;transl_table=11
NC_004088.1	RefSeq	gene	145213	145410	.	+	.	ID=gene130;Name=Y_RS00655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00655
NC_004088.1	Protein Homology	CDS	145213	145410	.	+	0	ID=cds122;Parent=gene130;Dbxref=Genbank:WP_002230558.1;Name=WP_002230558.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002230558.1;transl_table=11
NC_004088.1	RefSeq	gene	145407	145799	.	-	.	ID=gene131;Name=Y_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00660;old_locus_tag=y0133
NC_004088.1	Protein Homology	CDS	145407	145799	.	-	0	ID=cds123;Parent=gene131;Dbxref=Genbank:WP_002210133.1;Name=WP_002210133.1;gbkey=CDS;product=30S ribosomal protein S9;protein_id=WP_002210133.1;transl_table=11
NC_004088.1	RefSeq	gene	145814	146242	.	-	.	ID=gene132;Name=Y_RS00665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00665;old_locus_tag=y0134
NC_004088.1	Protein Homology	CDS	145814	146242	.	-	0	ID=cds124;Parent=gene132;Dbxref=Genbank:WP_002210132.1;Name=WP_002210132.1;gbkey=CDS;product=50S ribosomal protein L13;protein_id=WP_002210132.1;transl_table=11
NC_004088.1	RefSeq	gene	146556	147683	.	-	.	ID=gene133;Name=Y_RS00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00670;old_locus_tag=y0135
NC_004088.1	Protein Homology	CDS	146556	147683	.	-	0	ID=cds125;Parent=gene133;Dbxref=Genbank:WP_002210131.1;Name=WP_002210131.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210131.1;transl_table=11
NC_004088.1	RefSeq	gene	147907	148311	.	+	.	ID=gene134;Name=Y_RS00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00675;old_locus_tag=y0136
NC_004088.1	Protein Homology	CDS	147907	148311	.	+	0	ID=cds126;Parent=gene134;Dbxref=Genbank:WP_002210130.1;Name=WP_002210130.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210130.1;transl_table=11
NC_004088.1	RefSeq	gene	148582	149955	.	+	.	ID=gene135;Name=Y_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00680;old_locus_tag=y0137
NC_004088.1	Protein Homology	CDS	148582	149955	.	+	0	ID=cds127;Parent=gene135;Dbxref=Genbank:WP_002218066.1;Name=WP_002218066.1;gbkey=CDS;product=protease;protein_id=WP_002218066.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	149961	150678	.	+	.	ID=id21;gbkey=repeat_region
NC_004088.1	RefSeq	region	149966	150675	.	-	.	ID=id22;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	150072	150530	.	-	.	ID=gene136;Name=Y_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00685;old_locus_tag=y0138
NC_004088.1	Protein Homology	CDS	150072	150530	.	-	0	ID=cds128;Parent=gene136;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	150756	151844	.	+	.	ID=gene137;Name=Y_RS00690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00690;old_locus_tag=y0139
NC_004088.1	Protein Homology	CDS	150756	151844	.	+	0	ID=cds129;Parent=gene137;Dbxref=Genbank:WP_002210128.1;Name=WP_002210128.1;gbkey=CDS;product=serine endoprotease;protein_id=WP_002210128.1;transl_table=11
NC_004088.1	RefSeq	gene	152025	153287	.	-	.	ID=gene138;Name=Y_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00695;old_locus_tag=y0140
NC_004088.1	Protein Homology	CDS	152025	153287	.	-	0	ID=cds130;Parent=gene138;Dbxref=Genbank:WP_002210127.1;Name=WP_002210127.1;gbkey=CDS;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_002210127.1;transl_table=11
NC_004088.1	RefSeq	gene	153441	153695	.	-	.	ID=gene139;Name=Y_RS00700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00700;old_locus_tag=y0141
NC_004088.1	Protein Homology	CDS	153441	153695	.	-	0	ID=cds131;Parent=gene139;Dbxref=Genbank:WP_002210126.1;Name=WP_002210126.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210126.1;transl_table=11
NC_004088.1	RefSeq	gene	153842	154144	.	-	.	ID=gene140;Name=Y_RS00705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00705;old_locus_tag=y0142
NC_004088.1	Protein Homology	CDS	153842	154144	.	-	0	ID=cds132;Parent=gene140;Dbxref=Genbank:WP_002210125.1;Name=WP_002210125.1;gbkey=CDS;product=anti-sigma B factor antagonist;protein_id=WP_002210125.1;transl_table=11
NC_004088.1	RefSeq	gene	154180	154803	.	-	.	ID=gene141;Name=Y_RS00710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00710;old_locus_tag=y0143
NC_004088.1	Protein Homology	CDS	154180	154803	.	-	0	ID=cds133;Parent=gene141;Dbxref=Genbank:WP_002210124.1;Name=WP_002210124.1;Note=involved in maintaining outer membrane lipid asymmetry;gbkey=CDS;product=organic solvent ABC transporter substrate-binding protein;protein_id=WP_002210124.1;transl_table=11
NC_004088.1	RefSeq	gene	154816	155373	.	-	.	ID=gene142;Name=Y_RS00715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00715;old_locus_tag=y0144
NC_004088.1	Protein Homology	CDS	154816	155373	.	-	0	ID=cds134;Parent=gene142;Dbxref=Genbank:WP_002210123.1;Name=WP_002210123.1;gbkey=CDS;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_002210123.1;transl_table=11
NC_004088.1	RefSeq	gene	155378	156160	.	-	.	ID=gene143;Name=Y_RS00720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00720;old_locus_tag=y0145
NC_004088.1	Protein Homology	CDS	155378	156160	.	-	0	ID=cds135;Parent=gene143;Dbxref=Genbank:WP_002210122.1;Name=WP_002210122.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002210122.1;transl_table=11
NC_004088.1	RefSeq	gene	156378	157196	.	-	.	ID=gene144;Name=Y_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00725;old_locus_tag=y0146
NC_004088.1	Protein Homology	CDS	156378	157196	.	-	0	ID=cds136;Parent=gene144;Dbxref=Genbank:WP_002210121.1;Name=WP_002210121.1;Note=ABC transporter maintaining outer membrane lipid asymmetry;gbkey=CDS;product=organic solvent ABC transporter ATP-binding protein;protein_id=WP_002210121.1;transl_table=11
NC_004088.1	RefSeq	gene	157461	158435	.	+	.	ID=gene145;Name=Y_RS00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00730;old_locus_tag=y0147
NC_004088.1	Protein Homology	CDS	157461	158435	.	+	0	ID=cds137;Parent=gene145;Dbxref=Genbank:WP_002210120.1;Name=WP_002210120.1;gbkey=CDS;product=sodium:calcium antiporter;protein_id=WP_002210120.1;transl_table=11
NC_004088.1	RefSeq	gene	158546	159532	.	+	.	ID=gene146;Name=Y_RS00735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00735;old_locus_tag=y0149
NC_004088.1	Protein Homology	CDS	158546	159532	.	+	0	ID=cds138;Parent=gene146;Dbxref=Genbank:WP_002210119.1;Name=WP_002210119.1;gbkey=CDS;product=arabinose 5-phosphate isomerase KdsD;protein_id=WP_002210119.1;transl_table=11
NC_004088.1	RefSeq	gene	159781	160344	.	+	.	ID=gene147;Name=Y_RS00740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00740;old_locus_tag=y0150
NC_004088.1	Protein Homology	CDS	159781	160344	.	+	0	ID=cds139;Parent=gene147;Dbxref=Genbank:WP_002228203.1;Name=WP_002228203.1;Note=forms homotetramers%3B catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate%3B functions in lipopolysaccharide biosynthesis;gbkey=CDS;product=3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC;protein_id=WP_002228203.1;transl_table=11
NC_004088.1	RefSeq	gene	160341	160904	.	+	.	ID=gene148;Name=Y_RS00745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00745;old_locus_tag=y0151
NC_004088.1	Protein Homology	CDS	160341	160904	.	+	0	ID=cds140;Parent=gene148;Dbxref=Genbank:WP_002218352.1;Name=WP_002218352.1;gbkey=CDS;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_002218352.1;transl_table=11
NC_004088.1	RefSeq	gene	160888	161433	.	+	.	ID=gene149;Name=Y_RS00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00750;old_locus_tag=y0152
NC_004088.1	Protein Homology	CDS	160888	161433	.	+	0	ID=cds141;Parent=gene149;Dbxref=Genbank:WP_002210117.1;Name=WP_002210117.1;Note=LptA%3B periplasmic binding protein part of a putative ABC superfamily of uptake transporters%3B interacts with LptB protein%2C the ATP binding component of the uptake system;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002210117.1;transl_table=11
NC_004088.1	RefSeq	gene	161440	162165	.	+	.	ID=gene150;Name=Y_RS00755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00755;old_locus_tag=y0153
NC_004088.1	Protein Homology	CDS	161440	162165	.	+	0	ID=cds142;Parent=gene150;Dbxref=Genbank:WP_002210116.1;Name=WP_002210116.1;gbkey=CDS;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_002210116.1;transl_table=11
NC_004088.1	RefSeq	gene	162227	163660	.	+	.	ID=gene151;Name=Y_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00760;old_locus_tag=y0154
NC_004088.1	Protein Homology	CDS	162227	163660	.	+	0	ID=cds143;Parent=gene151;Dbxref=Genbank:WP_002210115.1;Name=WP_002210115.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism%3B the rhizobia often have 2 copies of this sigma factor%3B in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation%3B in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions%2C rpoN1 gene was regulated in response to oxygen;gbkey=CDS;product=RNA polymerase sigma-54 factor;protein_id=WP_002210115.1;transl_table=11
NC_004088.1	RefSeq	gene	163684	163971	.	+	.	ID=gene152;Name=Y_RS00765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS00765;pseudo=true
NC_004088.1	Protein Homology	CDS	163684	163971	.	+	0	ID=cds144;Parent=gene152;Note=YhbH%3B resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase%3B binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization)%3B seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:163789..163791%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	164089	164571	.	+	.	ID=gene153;Name=Y_RS00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00770;old_locus_tag=y0157
NC_004088.1	Protein Homology	CDS	164089	164571	.	+	0	ID=cds145;Parent=gene153;Dbxref=Genbank:WP_002213952.1;Name=WP_002213952.1;Note=involved in nitrogen metabolism%3B protein IIA is phosphorylated by enzyme I(Ntr);gbkey=CDS;product=PTS sugar transporter subunit IIA;protein_id=WP_002213952.1;transl_table=11
NC_004088.1	RefSeq	gene	164877	165731	.	+	.	ID=gene154;Name=Y_RS00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00775;old_locus_tag=y0158
NC_004088.1	Protein Homology	CDS	164877	165731	.	+	0	ID=cds146;Parent=gene154;Dbxref=Genbank:WP_002210113.1;Name=WP_002210113.1;Note=glucosamine-6-phosphate regulated%3B inactivates the glmS upregulator glmZ;gbkey=CDS;product=glmZ(sRNA)-inactivating NTPase;protein_id=WP_002210113.1;transl_table=11
NC_004088.1	RefSeq	gene	165728	166000	.	+	.	ID=gene155;Name=Y_RS00780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00780;old_locus_tag=y0159
NC_004088.1	Protein Homology	CDS	165728	166000	.	+	0	ID=cds147;Parent=gene155;Dbxref=Genbank:WP_002210112.1;Name=WP_002210112.1;gbkey=CDS;product=phosphohistidinoprotein-hexose phosphotransferase;protein_id=WP_002210112.1;transl_table=11
NC_004088.1	RefSeq	gene	166338	167273	.	+	.	ID=gene156;Name=Y_RS00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00785;old_locus_tag=y0161
NC_004088.1	Protein Homology	CDS	166338	167273	.	+	0	ID=cds148;Parent=gene156;Dbxref=Genbank:WP_002210111.1;Name=WP_002210111.1;gbkey=CDS;product=aspartate carbamoyltransferase;protein_id=WP_002210111.1;transl_table=11
NC_004088.1	RefSeq	gene	167285	167749	.	+	.	ID=gene157;Name=Y_RS00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00790;old_locus_tag=y0162
NC_004088.1	Protein Homology	CDS	167285	167749	.	+	0	ID=cds149;Parent=gene157;Dbxref=Genbank:WP_002210110.1;Name=WP_002210110.1;Note=involved in the allosteric regulation of aspartate carbamoyltransferase;gbkey=CDS;product=aspartate carbamoyltransferase regulatory chain;protein_id=WP_002210110.1;transl_table=11
NC_004088.1	RefSeq	gene	167887	168273	.	+	.	ID=gene158;Name=Y_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00795;old_locus_tag=y0163
NC_004088.1	Protein Homology	CDS	167887	168273	.	+	0	ID=cds150;Parent=gene158;Dbxref=Genbank:WP_002210109.1;Name=WP_002210109.1;Note=has endoribonuclease activity on mRNA;gbkey=CDS;product=reactive intermediate/imine deaminase;protein_id=WP_002210109.1;transl_table=11
NC_004088.1	RefSeq	gene	168572	169048	.	+	.	ID=gene159;Name=Y_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00800;old_locus_tag=y0164
NC_004088.1	Protein Homology	CDS	168572	169048	.	+	0	ID=cds151;Parent=gene159;Dbxref=Genbank:WP_002210107.1;Name=WP_002210107.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210107.1;transl_table=11
NC_004088.1	RefSeq	gene	169282	170235	.	+	.	ID=gene160;Name=treR;gbkey=Gene;gene=treR;gene_biotype=protein_coding;locus_tag=Y_RS00805;old_locus_tag=y0165
NC_004088.1	Protein Homology	CDS	169282	170235	.	+	0	ID=cds152;Parent=gene160;Dbxref=Genbank:WP_002210106.1;Name=WP_002210106.1;Note=regulates genes involved in trehalose metabolism%3B binds the intermediate trehalose-6-phosphate%3B binds a dimer%3B regulates treBC operon;gbkey=CDS;gene=treR;product=trehalose repressor;protein_id=WP_002210106.1;transl_table=11
NC_004088.1	RefSeq	gene	170646	172061	.	+	.	ID=gene161;Name=Y_RS00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00810;old_locus_tag=y0166
NC_004088.1	Protein Homology	CDS	170646	172061	.	+	0	ID=cds153;Parent=gene161;Dbxref=Genbank:WP_002215779.1;Name=WP_002215779.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS maltose transporter subunit IIBC;protein_id=WP_002215779.1;transl_table=11
NC_004088.1	RefSeq	gene	172156	173823	.	+	.	ID=gene162;Name=Y_RS00815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00815;old_locus_tag=y0167
NC_004088.1	Protein Homology	CDS	172156	173823	.	+	0	ID=cds154;Parent=gene162;Dbxref=Genbank:WP_002210104.1;Name=WP_002210104.1;gbkey=CDS;product=trehalose-6-phosphate hydrolase;protein_id=WP_002210104.1;transl_table=11
NC_004088.1	RefSeq	gene	174176	174586	.	+	.	ID=gene163;Name=Y_RS00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00820;old_locus_tag=y0168
NC_004088.1	Protein Homology	CDS	174176	174586	.	+	0	ID=cds155;Parent=gene163;Dbxref=Genbank:WP_002210103.1;Name=WP_002210103.1;Note=Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis%2C CTP for lipid synthesis%2C and GTP for protein elongation;gbkey=CDS;product=nucleoside diphosphate kinase regulator;protein_id=WP_002210103.1;transl_table=11
NC_004088.1	RefSeq	gene	174818	175204	.	-	.	ID=gene164;Name=Y_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00825;old_locus_tag=y0169
NC_004088.1	Protein Homology	CDS	174818	175204	.	-	0	ID=cds156;Parent=gene164;Dbxref=Genbank:WP_002210102.1;Name=WP_002210102.1;gbkey=CDS;product=soluble cytochrome b562 2;protein_id=WP_002210102.1;transl_table=11
NC_004088.1	RefSeq	gene	175412	176056	.	-	.	ID=gene165;Name=Y_RS00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00830;old_locus_tag=y0170
NC_004088.1	Protein Homology	CDS	175412	176056	.	-	0	ID=cds157;Parent=gene165;Dbxref=Genbank:WP_011055205.1;Name=WP_011055205.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011055205.1;transl_table=11
NC_004088.1	RefSeq	gene	176305	177645	.	-	.	ID=gene166;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;gene_synonym=tldE;locus_tag=Y_RS00835;old_locus_tag=y0171
NC_004088.1	Protein Homology	CDS	176305	177645	.	-	0	ID=cds158;Parent=gene166;Dbxref=Genbank:WP_002210100.1;Name=WP_002210100.1;Note=protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD;gbkey=CDS;gene=pmbA;product=peptidase PMbA;protein_id=WP_002210100.1;transl_table=11
NC_004088.1	RefSeq	gene	177826	178374	.	+	.	ID=gene167;Name=Y_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00840;old_locus_tag=y0172
NC_004088.1	Protein Homology	CDS	177826	178374	.	+	0	ID=cds159;Parent=gene167;Dbxref=Genbank:WP_002210099.1;Name=WP_002210099.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210099.1;transl_table=11
NC_004088.1	RefSeq	gene	178486	178767	.	-	.	ID=gene168;Name=Y_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00845;old_locus_tag=y0173
NC_004088.1	Protein Homology	CDS	178486	178767	.	-	0	ID=cds160;Parent=gene168;Dbxref=Genbank:WP_002210098.1;Name=WP_002210098.1;gbkey=CDS;product=ribonuclease inhibitor;protein_id=WP_002210098.1;transl_table=11
NC_004088.1	RefSeq	gene	178772	179245	.	-	.	ID=gene169;Name=Y_RS00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00850;old_locus_tag=y0174
NC_004088.1	Protein Homology	CDS	178772	179245	.	-	0	ID=cds161;Parent=gene169;Dbxref=Genbank:WP_002214288.1;Name=WP_002214288.1;gbkey=CDS;product=ribonuclease Ba;protein_id=WP_002214288.1;transl_table=11
NC_004088.1	RefSeq	gene	179440	179778	.	-	.	ID=gene170;Name=Y_RS00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00855;old_locus_tag=y0175
NC_004088.1	Protein Homology	CDS	179440	179778	.	-	0	ID=cds162;Parent=gene170;Dbxref=Genbank:WP_002214289.1;Name=WP_002214289.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_002214289.1;transl_table=11
NC_004088.1	RefSeq	gene	179775	180908	.	-	.	ID=gene171;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=protein_coding;locus_tag=Y_RS00860;old_locus_tag=y0176
NC_004088.1	Protein Homology	CDS	179775	180908	.	-	0	ID=cds163;Parent=gene171;Dbxref=Genbank:WP_002214290.1;Name=WP_002214290.1;Note=catalyzes the formation of succinate from succinate semialdehyde%3B NADP dependent;gbkey=CDS;gene=gabD;product=succinate-semialdehyde dehydrogenase;protein_id=WP_002214290.1;transl_table=11
NC_004088.1	RefSeq	gene	181175	183130	.	-	.	ID=gene172;Name=Y_RS00865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00865;old_locus_tag=y0177
NC_004088.1	Protein Homology	CDS	181175	183130	.	-	0	ID=cds164;Parent=gene172;Dbxref=Genbank:WP_002210095.1;Name=WP_002210095.1;Note=with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate;gbkey=CDS;product=p-hydroxybenzoic acid efflux pump subunit AaeB;protein_id=WP_002210095.1;transl_table=11
NC_004088.1	RefSeq	gene	183132	184067	.	-	.	ID=gene173;Name=Y_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00870;old_locus_tag=y0178
NC_004088.1	Protein Homology	CDS	183132	184067	.	-	0	ID=cds165;Parent=gene173;Dbxref=Genbank:WP_002210094.1;Name=WP_002210094.1;Note=with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid%2C 6-hydroxy-2-naphthoic and 2-hydroxycinnamate;gbkey=CDS;product=p-hydroxybenzoic acid efflux pump subunit AaeA;protein_id=WP_002210094.1;transl_table=11
NC_004088.1	RefSeq	gene	184075	184278	.	-	.	ID=gene174;Name=Y_RS00875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00875;old_locus_tag=y0179
NC_004088.1	Protein Homology	CDS	184075	184278	.	-	0	ID=cds166;Parent=gene174;Dbxref=Genbank:WP_002210093.1;Name=WP_002210093.1;Note=membrane protein AaeX%3B the gene is a member of the aaeXAB operon;gbkey=CDS;product=protein AaeX;protein_id=WP_002210093.1;transl_table=11
NC_004088.1	RefSeq	gene	184581	185492	.	+	.	ID=gene175;Name=Y_RS00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00880;old_locus_tag=y0180
NC_004088.1	Protein Homology	CDS	184581	185492	.	+	0	ID=cds167;Parent=gene175;Dbxref=Genbank:WP_002210092.1;Name=WP_002210092.1;Note=for aaeXAB operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210092.1;transl_table=11
NC_004088.1	RefSeq	gene	185753	186619	.	+	.	ID=gene176;Name=Y_RS00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00885;old_locus_tag=y0181
NC_004088.1	Protein Homology	CDS	185753	186619	.	+	0	ID=cds168;Parent=gene176;Dbxref=Genbank:WP_002214297.1;Name=WP_002214297.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002214297.1;transl_table=11
NC_004088.1	RefSeq	gene	186855	189356	.	+	.	ID=gene177;Name=Y_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00890;old_locus_tag=y0183
NC_004088.1	Protein Homology	CDS	186855	189356	.	+	0	ID=cds169;Parent=gene177;Dbxref=Genbank:WP_002210090.1;Name=WP_002210090.1;gbkey=CDS;product=toxin;protein_id=WP_002210090.1;transl_table=11
NC_004088.1	RefSeq	gene	189397	192990	.	+	.	ID=gene178;Name=Y_RS00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00895;old_locus_tag=y0184
NC_004088.1	Protein Homology	CDS	189397	192990	.	+	0	ID=cds170;Parent=gene178;Dbxref=Genbank:WP_002220204.1;Name=WP_002220204.1;gbkey=CDS;product=toxin;protein_id=WP_002220204.1;transl_table=11
NC_004088.1	RefSeq	gene	193047	197537	.	+	.	ID=gene179;Name=Y_RS00900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00900;old_locus_tag=y0185
NC_004088.1	Protein Homology	CDS	193047	197537	.	+	0	ID=cds171;Parent=gene179;Dbxref=Genbank:WP_002210089.1;Name=WP_002210089.1;gbkey=CDS;product=toxin;protein_id=WP_002210089.1;transl_table=11
NC_004088.1	RefSeq	gene	197671	197973	.	+	.	ID=gene180;Name=Y_RS00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00905;old_locus_tag=y0186
NC_004088.1	Protein Homology	CDS	197671	197973	.	+	0	ID=cds172;Parent=gene180;Dbxref=Genbank:WP_002214300.1;Name=WP_002214300.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214300.1;transl_table=11
NC_004088.1	RefSeq	gene	197986	198387	.	+	.	ID=gene181;Name=Y_RS00910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00910;old_locus_tag=y0187
NC_004088.1	Protein Homology	CDS	197986	198387	.	+	0	ID=cds173;Parent=gene181;Dbxref=Genbank:WP_002210087.1;Name=WP_002210087.1;gbkey=CDS;product=peptidase M15;protein_id=WP_002210087.1;transl_table=11
NC_004088.1	RefSeq	gene	198384	198743	.	+	.	ID=gene182;Name=Y_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00915;old_locus_tag=y0188
NC_004088.1	Protein Homology	CDS	198384	198743	.	+	0	ID=cds174;Parent=gene182;Dbxref=Genbank:WP_032486133.1;Name=WP_032486133.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032486133.1;transl_table=11
NC_004088.1	RefSeq	gene	198944	201775	.	+	.	ID=gene183;Name=Y_RS00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00925;old_locus_tag=y0190
NC_004088.1	Protein Homology	CDS	198944	201775	.	+	0	ID=cds175;Parent=gene183;Dbxref=Genbank:WP_002210084.1;Name=WP_002210084.1;gbkey=CDS;product=toxin;protein_id=WP_002210084.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	198971	200919	.	+	.	ID=id23;gbkey=repeat_region
NC_004088.1	RefSeq	gene	201800	204658	.	+	.	ID=gene184;Name=Y_RS00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00930;old_locus_tag=y0191
NC_004088.1	Protein Homology	CDS	201800	204658	.	+	0	ID=cds176;Parent=gene184;Dbxref=Genbank:WP_002210083.1;Name=WP_002210083.1;gbkey=CDS;product=toxin;protein_id=WP_002210083.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	201827	203775	.	+	.	ID=id24;gbkey=repeat_region
NC_004088.1	RefSeq	gene	204861	206306	.	-	.	ID=gene185;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=Y_RS00935;old_locus_tag=y0193
NC_004088.1	Protein Homology	CDS	204861	206306	.	-	0	ID=cds177;Parent=gene185;Dbxref=Genbank:WP_002210082.1;Name=WP_002210082.1;Note=responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17%2C an exported protein that targets the essential topoisomerase II DNA gyrase%3B degrades the E. coli plasmid F-encoded CcdA;gbkey=CDS;gene=tldD;product=protease TldD;protein_id=WP_002210082.1;transl_table=11
NC_004088.1	RefSeq	gene	206318	207187	.	-	.	ID=gene186;Name=Y_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00940;old_locus_tag=y0194
NC_004088.1	Protein Homology	CDS	206318	207187	.	-	0	ID=cds178;Parent=gene186;Dbxref=Genbank:WP_002210081.1;Name=WP_002210081.1;gbkey=CDS;product=amidohydrolase;protein_id=WP_002210081.1;transl_table=11
NC_004088.1	RefSeq	gene	207184	211086	.	-	.	ID=gene187;Name=Y_RS00945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00945;old_locus_tag=y0195
NC_004088.1	Protein Homology	CDS	207184	211086	.	-	0	ID=cds179;Parent=gene187;Dbxref=Genbank:WP_013060352.1;Name=WP_013060352.1;gbkey=CDS;product=membrane protein;protein_id=WP_013060352.1;transl_table=11
NC_004088.1	RefSeq	gene	211201	212670	.	-	.	ID=gene188;Name=Y_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00950;old_locus_tag=y0196
NC_004088.1	Protein Homology	CDS	211201	212670	.	-	0	ID=cds180;Parent=gene188;Dbxref=Genbank:WP_002210079.1;Name=WP_002210079.1;Note=involved in the processing of the 5'end of 16S rRNA;gbkey=CDS;product=ribonuclease G;protein_id=WP_002210079.1;transl_table=11
NC_004088.1	RefSeq	gene	212660	213253	.	-	.	ID=gene189;Name=Y_RS00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00955;old_locus_tag=y0197
NC_004088.1	Protein Homology	CDS	212660	213253	.	-	0	ID=cds181;Parent=gene189;Dbxref=Genbank:WP_002210078.1;Name=WP_002210078.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;product=septum formation inhibitor Maf;protein_id=WP_002210078.1;transl_table=11
NC_004088.1	RefSeq	gene	213267	213755	.	-	.	ID=gene190;Name=Y_RS00960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00960;old_locus_tag=y0199
NC_004088.1	Protein Homology	CDS	213267	213755	.	-	0	ID=cds182;Parent=gene190;Dbxref=Genbank:WP_002210077.1;Name=WP_002210077.1;Note=part of cell wall structural complex MreBCD%3B transmembrane component;gbkey=CDS;product=rod shape-determining protein MreD;protein_id=WP_002210077.1;transl_table=11
NC_004088.1	RefSeq	gene	213752	214747	.	-	.	ID=gene191;Name=Y_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00965;old_locus_tag=y0201
NC_004088.1	Protein Homology	CDS	213752	214747	.	-	0	ID=cds183;Parent=gene191;Dbxref=Genbank:WP_002210076.1;Name=WP_002210076.1;gbkey=CDS;product=rod shape-determining protein MreC;protein_id=WP_002210076.1;transl_table=11
NC_004088.1	RefSeq	gene	214951	215994	.	-	.	ID=gene192;Name=Y_RS00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00970;old_locus_tag=y0202
NC_004088.1	Protein Homology	CDS	214951	215994	.	-	0	ID=cds184;Parent=gene192;Dbxref=Genbank:WP_002228205.1;Name=WP_002228205.1;gbkey=CDS;product=rod shape-determining protein MreB;protein_id=WP_002228205.1;transl_table=11
NC_004088.1	RefSeq	gene	216331	218247	.	-	.	ID=gene193;Name=Y_RS00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00975;old_locus_tag=y0203
NC_004088.1	Protein Homology	CDS	216331	218247	.	-	0	ID=cds185;Parent=gene193;Dbxref=Genbank:WP_002210075.1;Name=WP_002210075.1;Note=regulates the degradation of the small RNAs CsrB and CsrC%3B may function to targate RNase E to specific RNA molecules;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210075.1;transl_table=11
NC_004088.1	RefSeq	gene	218648	219625	.	+	.	ID=gene194;Name=Y_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00980;old_locus_tag=y0204
NC_004088.1	Protein Homology	CDS	218648	219625	.	+	0	ID=cds186;Parent=gene194;Dbxref=Genbank:WP_002210074.1;Name=WP_002210074.1;gbkey=CDS;product=quinone oxidoreductase;protein_id=WP_002210074.1;transl_table=11
NC_004088.1	RefSeq	gene	219848	220948	.	+	.	ID=gene195;Name=Y_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00985;old_locus_tag=y0205
NC_004088.1	Protein Homology	CDS	219848	220948	.	+	0	ID=cds187;Parent=gene195;Dbxref=Genbank:WP_002210073.1;Name=WP_002210073.1;Note=in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase%3B requires inner membrane anchor protein YedZ;gbkey=CDS;product=sulfoxide reductase catalytic subunit YedY;protein_id=WP_002210073.1;transl_table=11
NC_004088.1	RefSeq	gene	220948	221568	.	+	.	ID=gene196;Name=Y_RS00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00990;old_locus_tag=y0206
NC_004088.1	Protein Homology	CDS	220948	221568	.	+	0	ID=cds188;Parent=gene196;Dbxref=Genbank:WP_002210072.1;Name=WP_002210072.1;Note=in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY%3B sulfite oxidase activity not demonstrated%3B contains heme;gbkey=CDS;product=sulfoxide reductase heme-binding subunit YedZ;protein_id=WP_002210072.1;transl_table=11
NC_004088.1	RefSeq	gene	221831	222283	.	+	.	ID=gene197;Name=Y_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS00995;old_locus_tag=y0207
NC_004088.1	Protein Homology	CDS	221831	222283	.	+	0	ID=cds189;Parent=gene197;Dbxref=Genbank:WP_002210071.1;Name=WP_002210071.1;gbkey=CDS;product=3-dehydroquinate dehydratase;protein_id=WP_002210071.1;transl_table=11
NC_004088.1	RefSeq	gene	222441	222905	.	+	.	ID=gene198;Name=Y_RS01000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01000;old_locus_tag=y0208
NC_004088.1	Protein Homology	CDS	222441	222905	.	+	0	ID=cds190;Parent=gene198;Dbxref=Genbank:WP_002210070.1;Name=WP_002210070.1;Note=composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex%2C the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxyl carrier protein subunit;protein_id=WP_002210070.1;transl_table=11
NC_004088.1	RefSeq	gene	222917	224266	.	+	.	ID=gene199;Name=Y_RS01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01005;old_locus_tag=y0209
NC_004088.1	Protein Homology	CDS	222917	224266	.	+	0	ID=cds191;Parent=gene199;Dbxref=Genbank:WP_002210069.1;Name=WP_002210069.1;Note=an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_002210069.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	225309	225609	.	+	.	ID=id25;gbkey=repeat_region
NC_004088.1	RefSeq	gene	225624	225866	.	+	.	ID=gene200;Name=Y_RS01010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01010;old_locus_tag=y0210
NC_004088.1	Protein Homology	CDS	225624	225866	.	+	0	ID=cds192;Parent=gene200;Dbxref=Genbank:WP_002210066.1;Name=WP_002210066.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210066.1;transl_table=11
NC_004088.1	RefSeq	gene	225856	227310	.	+	.	ID=gene201;Name=panF;gbkey=Gene;gene=panF;gene_biotype=protein_coding;locus_tag=Y_RS01015;old_locus_tag=y0211
NC_004088.1	Protein Homology	CDS	225856	227310	.	+	0	ID=cds193;Parent=gene201;Dbxref=Genbank:WP_002210065.1;Name=WP_002210065.1;Note=mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions%3B member of SSS family of sodium/solute symporters%3B the imported panthothenate is phosphorylated by panthothenate kinase;gbkey=CDS;gene=panF;product=sodium:pantothenate symporter;protein_id=WP_002210065.1;transl_table=11
NC_004088.1	RefSeq	gene	227386	228267	.	+	.	ID=gene202;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=Y_RS01020;old_locus_tag=y0212
NC_004088.1	Protein Homology	CDS	227386	228267	.	+	0	ID=cds194;Parent=gene202;Dbxref=Genbank:WP_002220963.1;Name=WP_002220963.1;Note=methylates ribosomal protein L11 at multiple amino acid positions%3B mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype;gbkey=CDS;gene=prmA;product=ribosomal protein L11 methyltransferase;protein_id=WP_002220963.1;transl_table=11
NC_004088.1	RefSeq	gene	228856	229821	.	+	.	ID=gene203;Name=Y_RS01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01025;old_locus_tag=y0213
NC_004088.1	Protein Homology	CDS	228856	229821	.	+	0	ID=cds195;Parent=gene203;Dbxref=Genbank:WP_002210062.1;Name=WP_002210062.1;gbkey=CDS;product=tRNA-dihydrouridine synthase B;protein_id=WP_002210062.1;transl_table=11
NC_004088.1	RefSeq	gene	229846	230142	.	+	.	ID=gene204;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=Y_RS01030;old_locus_tag=y0214
NC_004088.1	Protein Homology	CDS	229846	230142	.	+	0	ID=cds196;Parent=gene204;Dbxref=Genbank:WP_002210061.1;Name=WP_002210061.1;Note=Stimulates excision of phage lambda%3B affects Mu development%3B acts as an activator of rRNA and iRNA transcription;gbkey=CDS;gene=fis;product=Fis family transcriptional regulator;protein_id=WP_002210061.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	230254	230736	.	+	.	ID=id26;gbkey=repeat_region
NC_004088.1	RefSeq	gene	230546	230665	.	-	.	ID=gene205;Name=Y_RS01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01035
NC_004088.1	Protein Homology	CDS	230546	230665	.	-	0	ID=cds197;Parent=gene205;Dbxref=Genbank:WP_002217471.1;Name=WP_002217471.1;gbkey=CDS;product=colicin immunity protein;protein_id=WP_002217471.1;transl_table=11
NC_004088.1	RefSeq	gene	230896	231372	.	-	.	ID=gene206;Name=Y_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01040;old_locus_tag=y0215
NC_004088.1	Protein Homology	CDS	230896	231372	.	-	0	ID=cds198;Parent=gene206;Dbxref=Genbank:WP_002210060.1;Name=WP_002210060.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210060.1;transl_table=11
NC_004088.1	RefSeq	gene	231438	232100	.	-	.	ID=gene207;Name=Y_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01045;old_locus_tag=y0216
NC_004088.1	Protein Homology	CDS	231438	232100	.	-	0	ID=cds199;Parent=gene207;Dbxref=Genbank:WP_002210059.1;Name=WP_002210059.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_002210059.1;transl_table=11
NC_004088.1	RefSeq	gene	232190	233554	.	-	.	ID=gene208;Name=Y_RS01050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01050;old_locus_tag=y0217
NC_004088.1	Protein Homology	CDS	232190	233554	.	-	0	ID=cds200;Parent=gene208;Dbxref=Genbank:WP_002210058.1;Name=WP_002210058.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002210058.1;transl_table=11
NC_004088.1	RefSeq	gene	233708	234103	.	-	.	ID=gene209;Name=Y_RS01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01055;old_locus_tag=y0218
NC_004088.1	Protein Homology	CDS	233708	234103	.	-	0	ID=cds201;Parent=gene209;Dbxref=Genbank:WP_002217470.1;Name=WP_002217470.1;gbkey=CDS;product=gamma carboxymuconolactone decarboxylase;protein_id=WP_002217470.1;transl_table=11
NC_004088.1	RefSeq	gene	234281	235171	.	-	.	ID=gene210;Name=Y_RS01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01060;old_locus_tag=y0219
NC_004088.1	Protein Homology	CDS	234281	235171	.	-	0	ID=cds202;Parent=gene210;Dbxref=Genbank:WP_002210056.1;Name=WP_002210056.1;gbkey=CDS;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_002210056.1;transl_table=11
NC_004088.1	RefSeq	gene	235236	236048	.	-	.	ID=gene211;Name=Y_RS01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01065;old_locus_tag=y0220
NC_004088.1	Protein Homology	CDS	235236	236048	.	-	0	ID=cds203;Parent=gene211;Dbxref=Genbank:WP_002210055.1;Name=WP_002210055.1;gbkey=CDS;product=MBL fold hydrolase;protein_id=WP_002210055.1;transl_table=11
NC_004088.1	RefSeq	gene	236524	236991	.	+	.	ID=gene212;Name=Y_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01070;old_locus_tag=y0221
NC_004088.1	Protein Homology	CDS	236524	236991	.	+	0	ID=cds204;Parent=gene212;Dbxref=Genbank:WP_002210054.1;Name=WP_002210054.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210054.1;transl_table=11
NC_004088.1	RefSeq	gene	237282	237431	.	+	.	ID=gene213;Name=Y_RS01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01075
NC_004088.1	Protein Homology	CDS	237282	237431	.	+	0	ID=cds205;Parent=gene213;Dbxref=Genbank:WP_002374696.1;Name=WP_002374696.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002374696.1;transl_table=11
NC_004088.1	cmsearch	region	237345	237787	.	+	.	ID=id27;Note=cspA;gbkey=misc_feature
NC_004088.1	RefSeq	repeat_region	237506	237708	.	+	.	ID=id28;gbkey=repeat_region
NC_004088.1	RefSeq	gene	237524	237736	.	+	.	ID=gene214;Name=Y_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01080
NC_004088.1	Protein Homology	CDS	237524	237736	.	+	0	ID=cds206;Parent=gene214;Dbxref=Genbank:WP_002210053.1;Name=WP_002210053.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_002210053.1;transl_table=11
NC_004088.1	cmsearch	region	237822	238235	.	+	.	ID=id29;Note=cspA;gbkey=misc_feature
NC_004088.1	RefSeq	repeat_region	237978	238180	.	+	.	ID=id30;gbkey=repeat_region
NC_004088.1	RefSeq	gene	237996	238208	.	+	.	ID=gene215;Name=Y_RS01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01085
NC_004088.1	Protein Homology	CDS	237996	238208	.	+	0	ID=cds207;Parent=gene215;Dbxref=Genbank:WP_002210052.1;Name=WP_002210052.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_002210052.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	238281	238998	.	+	.	ID=id31;gbkey=repeat_region
NC_004088.1	RefSeq	region	238285	238994	.	-	.	ID=id32;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	238391	238849	.	-	.	ID=gene216;Name=Y_RS01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01090;old_locus_tag=y0225
NC_004088.1	Protein Homology	CDS	238391	238849	.	-	0	ID=cds208;Parent=gene216;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	238839	239015	.	-	.	ID=gene217;Name=Y_RS01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01095
NC_004088.1	Protein Homology	CDS	238839	239015	.	-	0	ID=cds209;Parent=gene217;Dbxref=Genbank:WP_025470774.1;Name=WP_025470774.1;gbkey=CDS;product=transposase;protein_id=WP_025470774.1;transl_table=11
NC_004088.1	RefSeq	gene	239254	240429	.	+	.	ID=gene218;Name=Y_RS01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01100;old_locus_tag=y0227
NC_004088.1	Protein Homology	CDS	239254	240429	.	+	0	ID=cds210;Parent=gene218;Dbxref=Genbank:WP_002210051.1;Name=WP_002210051.1;gbkey=CDS;product=DNA repair ATPase;protein_id=WP_002210051.1;transl_table=11
NC_004088.1	RefSeq	gene	240536	241882	.	-	.	ID=gene219;Name=Y_RS01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01105;old_locus_tag=y0228
NC_004088.1	Protein Homology	CDS	240536	241882	.	-	0	ID=cds211;Parent=gene219;Dbxref=Genbank:WP_002210050.1;Name=WP_002210050.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210050.1;transl_table=11
NC_004088.1	RefSeq	gene	242136	242987	.	+	.	ID=gene220;Name=Y_RS01110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01110;old_locus_tag=y0229
NC_004088.1	Protein Homology	CDS	242136	242987	.	+	0	ID=cds212;Parent=gene220;Dbxref=Genbank:WP_002228699.1;Name=WP_002228699.1;Note=YghU%3B B2989%3B one of eight putative glutathione transferase proteins from E. coli;gbkey=CDS;product=S-transferase;protein_id=WP_002228699.1;transl_table=11
NC_004088.1	RefSeq	gene	243177	243782	.	-	.	ID=gene221;Name=Y_RS01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01115;old_locus_tag=y0230
NC_004088.1	Protein Homology	CDS	243177	243782	.	-	0	ID=cds213;Parent=gene221;Dbxref=Genbank:WP_002210048.1;Name=WP_002210048.1;gbkey=CDS;product=phosphosugar isomerase;protein_id=WP_002210048.1;transl_table=11
NC_004088.1	RefSeq	gene	243779	245416	.	-	.	ID=gene222;Name=Y_RS01120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01120;old_locus_tag=y0231
NC_004088.1	Protein Homology	CDS	243779	245416	.	-	0	ID=cds214;Parent=gene222;Dbxref=Genbank:WP_002210047.1;Name=WP_002210047.1;gbkey=CDS;product=ribulokinase;protein_id=WP_002210047.1;transl_table=11
NC_004088.1	RefSeq	gene	245435	246388	.	-	.	ID=gene223;Name=Y_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01125;old_locus_tag=y0232
NC_004088.1	Protein Homology	CDS	245435	246388	.	-	0	ID=cds215;Parent=gene223;Dbxref=Genbank:WP_002210046.1;Name=WP_002210046.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002210046.1;transl_table=11
NC_004088.1	RefSeq	gene	246390	247379	.	-	.	ID=gene224;Name=Y_RS01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01130;old_locus_tag=y0233
NC_004088.1	Protein Homology	CDS	246390	247379	.	-	0	ID=cds216;Parent=gene224;Dbxref=Genbank:WP_002210045.1;Name=WP_002210045.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002210045.1;transl_table=11
NC_004088.1	RefSeq	gene	247372	248868	.	-	.	ID=gene225;Name=Y_RS01135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01135;old_locus_tag=y0234
NC_004088.1	Protein Homology	CDS	247372	248868	.	-	0	ID=cds217;Parent=gene225;Dbxref=Genbank:WP_002210044.1;Name=WP_002210044.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002210044.1;transl_table=11
NC_004088.1	RefSeq	gene	249072	250061	.	-	.	ID=gene226;Name=Y_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01140;old_locus_tag=y0235
NC_004088.1	Protein Homology	CDS	249072	250061	.	-	0	ID=cds218;Parent=gene226;Dbxref=Genbank:WP_002210043.1;Name=WP_002210043.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002210043.1;transl_table=11
NC_004088.1	RefSeq	gene	250855	251775	.	+	.	ID=gene227;Name=Y_RS01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01145;old_locus_tag=y0236
NC_004088.1	Protein Homology	CDS	250855	251775	.	+	0	ID=cds219;Parent=gene227;Dbxref=Genbank:WP_002210042.1;Name=WP_002210042.1;Note=Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock;gbkey=CDS;product=lipid A biosynthesis palmitoleoyl acyltransferase;protein_id=WP_002210042.1;transl_table=11
NC_004088.1	RefSeq	gene	251927	253114	.	+	.	ID=gene228;Name=Y_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01150;old_locus_tag=y0237
NC_004088.1	Protein Homology	CDS	251927	253114	.	+	0	ID=cds220;Parent=gene228;Dbxref=Genbank:WP_002210041.1;Name=WP_002210041.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210041.1;transl_table=11
NC_004088.1	RefSeq	gene	253332	254981	.	-	.	ID=gene229;Name=Y_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01155;old_locus_tag=y0238
NC_004088.1	Protein Homology	CDS	253332	254981	.	-	0	ID=cds221;Parent=gene229;Dbxref=Genbank:WP_002215816.1;Name=WP_002215816.1;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_002215816.1;transl_table=11
NC_004088.1	RefSeq	gene	255330	256685	.	-	.	ID=gene230;Name=Y_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01160;old_locus_tag=y0239
NC_004088.1	Protein Homology	CDS	255330	256685	.	-	0	ID=cds222;Parent=gene230;Dbxref=Genbank:WP_002210039.1;Name=WP_002210039.1;gbkey=CDS;product=xanthine/uracil permease;protein_id=WP_002210039.1;transl_table=11
NC_004088.1	RefSeq	gene	257139	257342	.	+	.	ID=gene231;Name=Y_RS01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01165;old_locus_tag=y0240
NC_004088.1	Protein Homology	CDS	257139	257342	.	+	0	ID=cds223;Parent=gene231;Dbxref=Genbank:WP_002210038.1;Name=WP_002210038.1;gbkey=CDS;product=DNA-damage-inducible protein J;protein_id=WP_002210038.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	257420	257587	.	+	.	ID=id33;gbkey=repeat_region
NC_004088.1	RefSeq	gene	257961	258776	.	-	.	ID=gene232;Name=ssuB;gbkey=Gene;gene=ssuB;gene_biotype=protein_coding;locus_tag=Y_RS01170;old_locus_tag=y0242
NC_004088.1	Protein Homology	CDS	257961	258776	.	-	0	ID=cds224;Parent=gene232;Dbxref=Genbank:WP_002210036.1;Name=WP_002210036.1;Note=part of the ABC type transport system SsuABC for aliphatic sulfonates%3B with SsuA being the periplasmic substrate-binding subunit%2C SsuB the ATP-binding subunit and SsuC the permease;gbkey=CDS;gene=ssuB;product=aliphatic sulfonate ABC transporter ATP-binding protein;protein_id=WP_002210036.1;transl_table=11
NC_004088.1	RefSeq	gene	258773	259567	.	-	.	ID=gene233;Name=ssuC;gbkey=Gene;gene=ssuC;gene_biotype=protein_coding;locus_tag=Y_RS01175;old_locus_tag=y0243
NC_004088.1	Protein Homology	CDS	258773	259567	.	-	0	ID=cds225;Parent=gene233;Dbxref=Genbank:WP_002213853.1;Name=WP_002213853.1;Note=part of the ABC type transport system for alkanesulfonate SsuABC%3B SsuB the ATP-binding subunit and SsuC the permease;gbkey=CDS;gene=ssuC;product=sulfonate ABC transporter;protein_id=WP_002213853.1;transl_table=11
NC_004088.1	RefSeq	gene	259579	260727	.	-	.	ID=gene234;Name=Y_RS01180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01180;old_locus_tag=y0244
NC_004088.1	Protein Homology	CDS	259579	260727	.	-	0	ID=cds226;Parent=gene234;Dbxref=Genbank:WP_002210034.1;Name=WP_002210034.1;Note=catalyzes the release of sulfite from alkanesulfonates;gbkey=CDS;product=alkanesulfonate monooxygenase;protein_id=WP_002210034.1;transl_table=11
NC_004088.1	RefSeq	gene	260746	261882	.	-	.	ID=gene235;Name=Y_RS01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01185;old_locus_tag=y0245
NC_004088.1	Protein Homology	CDS	260746	261882	.	-	0	ID=cds227;Parent=gene235;Dbxref=Genbank:WP_002220949.1;Name=WP_002220949.1;gbkey=CDS;product=sulfonate ABC transporter substrate-binding protein;protein_id=WP_002220949.1;transl_table=11
NC_004088.1	RefSeq	gene	261897	262478	.	-	.	ID=gene236;Name=Y_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01190;old_locus_tag=y0246
NC_004088.1	Protein Homology	CDS	261897	262478	.	-	0	ID=cds228;Parent=gene236;Dbxref=Genbank:WP_002210032.1;Name=WP_002210032.1;gbkey=CDS;product=FMN reductase;protein_id=WP_002210032.1;transl_table=11
NC_004088.1	RefSeq	gene	262949	263650	.	+	.	ID=gene237;Name=Y_RS01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01195;old_locus_tag=y0247
NC_004088.1	Protein Homology	CDS	262949	263650	.	+	0	ID=cds229;Parent=gene237;Dbxref=Genbank:WP_002210030.1;Name=WP_002210030.1;gbkey=CDS;product=deoxyribose-phosphate aldolase;protein_id=WP_002210030.1;transl_table=11
NC_004088.1	RefSeq	gene	263807	264736	.	+	.	ID=gene238;Name=Y_RS01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01200;old_locus_tag=y0248
NC_004088.1	Protein Homology	CDS	263807	264736	.	+	0	ID=cds230;Parent=gene238;Dbxref=Genbank:WP_002210028.1;Name=WP_002210028.1;gbkey=CDS;product=carbohydrate kinase;protein_id=WP_002210028.1;transl_table=11
NC_004088.1	RefSeq	gene	264742	265245	.	+	.	ID=gene239;Name=Y_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01205;old_locus_tag=y0249
NC_004088.1	Protein Homology	CDS	264742	265245	.	+	0	ID=cds231;Parent=gene239;Dbxref=Genbank:WP_002210027.1;Name=WP_002210027.1;gbkey=CDS;product=carbohydrate transporter;protein_id=WP_002210027.1;transl_table=11
NC_004088.1	RefSeq	gene	265407	266273	.	-	.	ID=gene240;Name=Y_RS01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01210;old_locus_tag=y0250
NC_004088.1	Protein Homology	CDS	265407	266273	.	-	0	ID=cds232;Parent=gene240;Dbxref=Genbank:WP_002210026.1;Name=WP_002210026.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002210026.1;transl_table=11
NC_004088.1	RefSeq	gene	266543	267673	.	+	.	ID=gene241;Name=Y_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01215;old_locus_tag=y0251
NC_004088.1	Protein Homology	CDS	266543	267673	.	+	0	ID=cds233;Parent=gene241;Dbxref=Genbank:WP_002210025.1;Name=WP_002210025.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002210025.1;transl_table=11
NC_004088.1	RefSeq	gene	267670	268569	.	+	.	ID=gene242;Name=Y_RS01220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01220;old_locus_tag=y0252
NC_004088.1	Protein Homology	CDS	267670	268569	.	+	0	ID=cds234;Parent=gene242;Dbxref=Genbank:WP_002210024.1;Name=WP_002210024.1;gbkey=CDS;product=xylose isomerase;protein_id=WP_002210024.1;transl_table=11
NC_004088.1	RefSeq	gene	268916	269710	.	-	.	ID=gene243;Name=Y_RS01225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01225;old_locus_tag=y0254
NC_004088.1	Protein Homology	CDS	268916	269710	.	-	0	ID=cds235;Parent=gene243;Dbxref=Genbank:WP_002210023.1;Name=WP_002210023.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210023.1;transl_table=11
NC_004088.1	RefSeq	gene	269719	274257	.	-	.	ID=gene244;Name=Y_RS01230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01230;old_locus_tag=y0255
NC_004088.1	Protein Homology	CDS	269719	274257	.	-	0	ID=cds236;Parent=gene244;Dbxref=Genbank:WP_002210022.1;Name=WP_002210022.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210022.1;transl_table=11
NC_004088.1	RefSeq	gene	274302	274724	.	-	.	ID=gene245;Name=Y_RS01235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01235;old_locus_tag=y0256
NC_004088.1	Protein Homology	CDS	274302	274724	.	-	0	ID=cds237;Parent=gene245;Dbxref=Genbank:WP_002213861.1;Name=WP_002213861.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213861.1;transl_table=11
NC_004088.1	RefSeq	gene	274727	276781	.	-	.	ID=gene246;Name=Y_RS01240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01240;old_locus_tag=y0257
NC_004088.1	Protein Homology	CDS	274727	276781	.	-	0	ID=cds238;Parent=gene246;Dbxref=Genbank:WP_041175910.1;Name=WP_041175910.1;gbkey=CDS;product=type VI secretion protein Vgr;protein_id=WP_041175910.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	275107	277178	.	+	.	ID=id34;gbkey=repeat_region
NC_004088.1	RefSeq	gene	277285	277692	.	+	.	ID=gene247;Name=Y_RS01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01250;old_locus_tag=y0260
NC_004088.1	Protein Homology	CDS	277285	277692	.	+	0	ID=cds239;Parent=gene247;Dbxref=Genbank:WP_002210018.1;Name=WP_002210018.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210018.1;transl_table=11
NC_004088.1	RefSeq	gene	277774	277998	.	+	.	ID=gene248;Name=Y_RS01255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01255;old_locus_tag=y0261
NC_004088.1	Protein Homology	CDS	277774	277998	.	+	0	ID=cds240;Parent=gene248;Dbxref=Genbank:WP_002213866.1;Name=WP_002213866.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213866.1;transl_table=11
NC_004088.1	RefSeq	gene	278122	278265	.	+	.	ID=gene249;Name=Y_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01260
NC_004088.1	Protein Homology	CDS	278122	278265	.	+	0	ID=cds241;Parent=gene249;Dbxref=Genbank:WP_002210017.1;Name=WP_002210017.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210017.1;transl_table=11
NC_004088.1	RefSeq	gene	278315	278800	.	-	.	ID=gene250;Name=Y_RS01265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01265;old_locus_tag=y0264
NC_004088.1	Protein Homology	CDS	278315	278800	.	-	0	ID=cds242;Parent=gene250;Dbxref=Genbank:WP_002213869.1;Name=WP_002213869.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213869.1;transl_table=11
NC_004088.1	RefSeq	gene	278802	280172	.	-	.	ID=gene251;Name=Y_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01270;old_locus_tag=y0265
NC_004088.1	Protein Homology	CDS	278802	280172	.	-	0	ID=cds243;Parent=gene251;Dbxref=Genbank:WP_002213871.1;Name=WP_002213871.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_002213871.1;transl_table=11
NC_004088.1	RefSeq	gene	280200	283064	.	-	.	ID=gene252;Name=Y_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01275;old_locus_tag=y0266
NC_004088.1	Protein Homology	CDS	280200	283064	.	-	0	ID=cds244;Parent=gene252;Dbxref=Genbank:WP_002213873.1;Name=WP_002213873.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213873.1;transl_table=11
NC_004088.1	RefSeq	gene	283057	283515	.	-	.	ID=gene253;Name=Y_RS01280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01280;old_locus_tag=y0267
NC_004088.1	Protein Homology	CDS	283057	283515	.	-	0	ID=cds245;Parent=gene253;Dbxref=Genbank:WP_002213383.1;Name=WP_002213383.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213383.1;transl_table=11
NC_004088.1	RefSeq	gene	283521	285923	.	-	.	ID=gene254;Name=Y_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01285;old_locus_tag=y0268
NC_004088.1	Protein Homology	CDS	283521	285923	.	-	0	ID=cds246;Parent=gene254;Dbxref=Genbank:WP_002213876.1;Name=WP_002213876.1;gbkey=CDS;product=type VI secretion protein Vgr;protein_id=WP_002213876.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	283925	285656	.	+	.	ID=id35;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	285680	286177	.	+	.	ID=id36;gbkey=repeat_region
NC_004088.1	RefSeq	gene	285945	286478	.	-	.	ID=gene255;Name=Y_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01290
NC_004088.1	Protein Homology	CDS	285945	286478	.	-	0	ID=cds247;Parent=gene255;Dbxref=Genbank:WP_002213878.1;Name=WP_002213878.1;gbkey=CDS;product=membrane protein;protein_id=WP_002213878.1;transl_table=11
NC_004088.1	RefSeq	gene	286475	287257	.	-	.	ID=gene256;Name=Y_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01295
NC_004088.1	Protein Homology	CDS	286475	287257	.	-	0	ID=cds248;Parent=gene256;Dbxref=Genbank:WP_002213880.1;Name=WP_002213880.1;gbkey=CDS;product=membrane protein;protein_id=WP_002213880.1;transl_table=11
NC_004088.1	RefSeq	gene	287382	290914	.	-	.	ID=gene257;Name=Y_RS01300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS01300;pseudo=true
NC_004088.1	Protein Homology	CDS	287382	290914	.	-	0	ID=cds249;Parent=gene257;exception=annotated by transcript or proteomic data;gbkey=CDS;product=type VI secretion protein IcmF;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	290946	292334	.	-	.	ID=gene258;Name=Y_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01305;old_locus_tag=y0272
NC_004088.1	Protein Homology	CDS	290946	292334	.	-	0	ID=cds250;Parent=gene258;Dbxref=Genbank:WP_002212110.1;Name=WP_002212110.1;gbkey=CDS;product=membrane protein;protein_id=WP_002212110.1;transl_table=11
NC_004088.1	RefSeq	gene	292340	293026	.	-	.	ID=gene259;Name=Y_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01310;old_locus_tag=y0273
NC_004088.1	Protein Homology	CDS	292340	293026	.	-	0	ID=cds251;Parent=gene259;Dbxref=Genbank:WP_002212109.1;Name=WP_002212109.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002212109.1;transl_table=11
NC_004088.1	RefSeq	gene	293023	293820	.	-	.	ID=gene260;Name=Y_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01315;old_locus_tag=y0274
NC_004088.1	Protein Homology	CDS	293023	293820	.	-	0	ID=cds252;Parent=gene260;Dbxref=Genbank:WP_002212108.1;Name=WP_002212108.1;gbkey=CDS;product=Fis family transcriptional regulator;protein_id=WP_002212108.1;transl_table=11
NC_004088.1	RefSeq	gene	293817	296420	.	-	.	ID=gene261;Name=Y_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01320;old_locus_tag=y0275
NC_004088.1	Protein Homology	CDS	293817	296420	.	-	0	ID=cds253;Parent=gene261;Dbxref=Genbank:WP_002212107.1;Name=WP_002212107.1;gbkey=CDS;product=ATP-dependent Clp protease ClpV;protein_id=WP_002212107.1;transl_table=11
NC_004088.1	RefSeq	gene	296431	297183	.	-	.	ID=gene262;Name=Y_RS01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01325;old_locus_tag=y0276
NC_004088.1	Protein Homology	CDS	296431	297183	.	-	0	ID=cds254;Parent=gene262;Dbxref=Genbank:WP_002355154.1;Name=WP_002355154.1;gbkey=CDS;product=chemotaxis protein MotB;protein_id=WP_002355154.1;transl_table=11
NC_004088.1	RefSeq	gene	297198	298544	.	-	.	ID=gene263;Name=Y_RS01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01330;old_locus_tag=y0277
NC_004088.1	Protein Homology	CDS	297198	298544	.	-	0	ID=cds255;Parent=gene263;Dbxref=Genbank:WP_002223800.1;Name=WP_002223800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002223800.1;transl_table=11
NC_004088.1	RefSeq	gene	298547	299092	.	-	.	ID=gene264;Name=Y_RS01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01335;old_locus_tag=y0278
NC_004088.1	Protein Homology	CDS	298547	299092	.	-	0	ID=cds256;Parent=gene264;Dbxref=Genbank:WP_002212104.1;Name=WP_002212104.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002212104.1;transl_table=11
NC_004088.1	RefSeq	gene	299092	300408	.	-	.	ID=gene265;Name=Y_RS01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01340;old_locus_tag=y0279
NC_004088.1	Protein Homology	CDS	299092	300408	.	-	0	ID=cds257;Parent=gene265;Dbxref=Genbank:WP_002212103.1;Name=WP_002212103.1;gbkey=CDS;product=phosphopeptide-binding protein;protein_id=WP_002212103.1;transl_table=11
NC_004088.1	RefSeq	gene	300534	301622	.	-	.	ID=gene266;Name=Y_RS01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01345;old_locus_tag=y0280
NC_004088.1	Protein Homology	CDS	300534	301622	.	-	0	ID=cds258;Parent=gene266;Dbxref=Genbank:WP_002213885.1;Name=WP_002213885.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002213885.1;transl_table=11
NC_004088.1	RefSeq	gene	301586	302329	.	-	.	ID=gene267;Name=Y_RS01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01350;old_locus_tag=y0281
NC_004088.1	Protein Homology	CDS	301586	302329	.	-	0	ID=cds259;Parent=gene267;Dbxref=Genbank:WP_002228704.1;Name=WP_002228704.1;gbkey=CDS;product=type VI secretion protein ImpG;protein_id=WP_002228704.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	302324	305664	.	+	.	ID=id37;gbkey=repeat_region
NC_004088.1	RefSeq	region	302324	303509	.	+	.	ID=id38;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	302380	302895	.	+	.	ID=gene268;Name=Y_RS01355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01355
NC_004088.1	Protein Homology	CDS	302380	302895	.	+	0	ID=cds260;Parent=gene268;Dbxref=Genbank:WP_002209258.1;Name=WP_002209258.1;gbkey=CDS;product=transposase;protein_id=WP_002209258.1;transl_table=11
NC_004088.1	RefSeq	gene	302949	303569	.	+	.	ID=gene269;Name=Y_RS01360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01360;old_locus_tag=y0283
NC_004088.1	Protein Homology	CDS	302949	303569	.	+	0	ID=cds261;Parent=gene269;Dbxref=Genbank:WP_011055233.1;Name=WP_011055233.1;gbkey=CDS;product=transposase;protein_id=WP_011055233.1;transl_table=11
NC_004088.1	RefSeq	region	303510	305463	.	+	.	ID=id39;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	303596	304618	.	+	.	ID=gene270;Name=Y_RS01365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01365;old_locus_tag=y0284
NC_004088.1	Protein Homology	CDS	303596	304618	.	+	0	ID=cds262;Parent=gene270;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	304618	305397	.	+	.	ID=gene271;Name=Y_RS01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01370;old_locus_tag=y0285
NC_004088.1	Protein Homology	CDS	304618	305397	.	+	0	ID=cds263;Parent=gene271;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	region	305463	305663	.	-	.	ID=id40;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	305910	308024	.	-	.	ID=gene272;Name=Y_RS01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01375;old_locus_tag=y0286
NC_004088.1	Protein Homology	CDS	305910	308024	.	-	0	ID=cds264;Parent=gene272;Dbxref=Genbank:WP_002223915.1;Name=WP_002223915.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002223915.1;transl_table=11
NC_004088.1	RefSeq	gene	308017	309309	.	-	.	ID=gene273;Name=Y_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01380;old_locus_tag=y0287
NC_004088.1	Protein Homology	CDS	308017	309309	.	-	0	ID=cds265;Parent=gene273;Dbxref=Genbank:WP_002208949.1;Name=WP_002208949.1;gbkey=CDS;product=colicin V secretion protein CvaA;protein_id=WP_002208949.1;transl_table=11
NC_004088.1	RefSeq	gene	309522	309761	.	+	.	ID=gene274;Name=Y_RS01385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01385;old_locus_tag=y0288
NC_004088.1	Protein Homology	CDS	309522	309761	.	+	0	ID=cds266;Parent=gene274;Dbxref=Genbank:WP_002215873.1;Name=WP_002215873.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215873.1;transl_table=11
NC_004088.1	RefSeq	gene	309936	310085	.	+	.	ID=gene275;Name=Y_RS01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01390;old_locus_tag=y0289
NC_004088.1	Protein Homology	CDS	309936	310085	.	+	0	ID=cds267;Parent=gene275;Dbxref=Genbank:WP_002208947.1;Name=WP_002208947.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208947.1;transl_table=11
NC_004088.1	RefSeq	gene	310391	310975	.	+	.	ID=gene276;Name=Y_RS01395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01395;old_locus_tag=y0291
NC_004088.1	Protein Homology	CDS	310391	310975	.	+	0	ID=cds268;Parent=gene276;Dbxref=Genbank:WP_002228141.1;Name=WP_002228141.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228141.1;transl_table=11
NC_004088.1	RefSeq	gene	311092	311577	.	-	.	ID=gene277;Name=Y_RS01400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01400;old_locus_tag=y0292
NC_004088.1	Protein Homology	CDS	311092	311577	.	-	0	ID=cds269;Parent=gene277;Dbxref=Genbank:WP_002208945.1;Name=WP_002208945.1;Note=regulator of RNase E%3B increases half-life and abundance of RNAs%3B interacts with RNase E possibly inhibiting catalytic activity;gbkey=CDS;product=ribonuclease E activity regulator RraA;protein_id=WP_002208945.1;transl_table=11
NC_004088.1	RefSeq	gene	311719	312636	.	-	.	ID=gene278;Name=Y_RS01405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01405;old_locus_tag=y0293
NC_004088.1	Protein Homology	CDS	311719	312636	.	-	0	ID=cds270;Parent=gene278;Dbxref=Genbank:WP_002208944.1;Name=WP_002208944.1;Note=catalyzes the formation of dimethylmenaquinone from 1%2C4-dihydroxy-2-naphthoate and octaprenyl diphosphate;gbkey=CDS;product=1%2C4-dihydroxy-2-naphthoate octaprenyltransferase;protein_id=WP_002208944.1;transl_table=11
NC_004088.1	RefSeq	gene	312872	314203	.	-	.	ID=gene279;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=Y_RS01410;old_locus_tag=y0294
NC_004088.1	Protein Homology	CDS	312872	314203	.	-	0	ID=cds271;Parent=gene279;Dbxref=Genbank:WP_002208943.1;Name=WP_002208943.1;Note=heat shock protein involved in degradation of misfolded proteins;gbkey=CDS;gene=hslU;product=ATP-dependent protease ATPase subunit HslU;protein_id=WP_002208943.1;transl_table=11
NC_004088.1	RefSeq	gene	314274	314798	.	-	.	ID=gene280;Name=Y_RS01415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01415;old_locus_tag=y0295
NC_004088.1	Protein Homology	CDS	314274	314798	.	-	0	ID=cds272;Parent=gene280;Dbxref=Genbank:WP_002208942.1;Name=WP_002208942.1;Note=heat shock protein involved in degradation of misfolded proteins;gbkey=CDS;product=ATP-dependent protease subunit HslV;protein_id=WP_002208942.1;transl_table=11
NC_004088.1	RefSeq	gene	314898	315743	.	-	.	ID=gene281;Name=Y_RS01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01420;old_locus_tag=y0296
NC_004088.1	Protein Homology	CDS	314898	315743	.	-	0	ID=cds273;Parent=gene281;Dbxref=Genbank:WP_002208941.1;Name=WP_002208941.1;gbkey=CDS;product=cell division protein FtsN;protein_id=WP_002208941.1;transl_table=11
NC_004088.1	RefSeq	gene	315809	316837	.	-	.	ID=gene282;Name=Y_RS01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01425;old_locus_tag=y0297
NC_004088.1	Protein Homology	CDS	315809	316837	.	-	0	ID=cds274;Parent=gene282;Dbxref=Genbank:WP_002216730.1;Name=WP_002216730.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002216730.1;transl_table=11
NC_004088.1	RefSeq	gene	316960	317103	.	-	.	ID=gene283;Name=Y_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01430
NC_004088.1	Protein Homology	CDS	316960	317103	.	-	0	ID=cds275;Parent=gene283;Dbxref=Genbank:WP_002216732.1;Name=WP_002216732.1;gbkey=CDS;product=primosome assembly protein PriA;protein_id=WP_002216732.1;transl_table=11
NC_004088.1	RefSeq	gene	317190	319388	.	-	.	ID=gene284;Name=Y_RS01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01435;old_locus_tag=y0298
NC_004088.1	Protein Homology	CDS	317190	319388	.	-	0	ID=cds276;Parent=gene284;Dbxref=Genbank:WP_002208938.1;Name=WP_002208938.1;Note=binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3'-5' helicase activity;gbkey=CDS;product=primosome assembly protein PriA;protein_id=WP_002208938.1;transl_table=11
NC_004088.1	RefSeq	gene	319631	319846	.	+	.	ID=gene285;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=Y_RS01440;old_locus_tag=y0299
NC_004088.1	Protein Homology	CDS	319631	319846	.	+	0	ID=cds277;Parent=gene285;Dbxref=Genbank:WP_002216737.1;Name=WP_002216737.1;Note=RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome;gbkey=CDS;gene=rpmE;product=50S ribosomal protein L31;protein_id=WP_002216737.1;transl_table=11
NC_004088.1	RefSeq	gene	320371	320826	.	-	.	ID=gene286;Name=Y_RS01445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01445;old_locus_tag=y0300
NC_004088.1	Protein Homology	CDS	320371	320826	.	-	0	ID=cds278;Parent=gene286;Dbxref=Genbank:WP_002208936.1;Name=WP_002208936.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208936.1;transl_table=11
NC_004088.1	RefSeq	gene	320877	321038	.	+	.	ID=gene287;Name=Y_RS01450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01450
NC_004088.1	Protein Homology	CDS	320877	321038	.	+	0	ID=cds279;Parent=gene287;Dbxref=Genbank:WP_002216739.1;Name=WP_002216739.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216739.1;transl_table=11
NC_004088.1	RefSeq	gene	321175	321492	.	-	.	ID=gene288;Name=Y_RS01455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01455;old_locus_tag=y0301
NC_004088.1	Protein Homology	CDS	321175	321492	.	-	0	ID=cds280;Parent=gene288;Dbxref=Genbank:WP_002208935.1;Name=WP_002208935.1;Note=when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis;gbkey=CDS;product=met repressor;protein_id=WP_002208935.1;transl_table=11
NC_004088.1	RefSeq	gene	321870	323029	.	+	.	ID=gene289;Name=Y_RS01460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS01460;pseudo=true
NC_004088.1	Protein Homology	CDS	321870	323029	.	+	0	ID=cds281;Parent=gene289;Note=catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cystathionine gamma-synthase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	323032	325467	.	+	.	ID=gene290;Name=metL;gbkey=Gene;gene=metL;gene_biotype=protein_coding;gene_synonym=metM;locus_tag=Y_RS01465;old_locus_tag=y0303
NC_004088.1	Protein Homology	CDS	323032	325467	.	+	0	ID=cds282;Parent=gene290;Dbxref=Genbank:WP_002208934.1;Name=WP_002208934.1;Note=multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways;gbkey=CDS;gene=metL;product=bifunctional aspartate kinase II/homoserine dehydrogenase II;protein_id=WP_002208934.1;transl_table=11
NC_004088.1	RefSeq	gene	325700	326584	.	+	.	ID=gene291;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=Y_RS01470;old_locus_tag=y0304
NC_004088.1	Protein Homology	CDS	325700	326584	.	+	0	ID=cds283;Parent=gene291;Dbxref=Genbank:WP_002208933.1;Name=WP_002208933.1;Note=MTHFR%3B catalyzes NADH-linked reduction of 5%2C10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor;gbkey=CDS;gene=metF;product=5%2C10-methylenetetrahydrofolate reductase;protein_id=WP_002208933.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	326625	328415	.	+	.	ID=id41;gbkey=repeat_region
NC_004088.1	RefSeq	region	326721	328172	.	-	.	ID=id42;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	326762	327373	.	-	.	ID=gene292;Name=Y_RS01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01475;old_locus_tag=y0305
NC_004088.1	Protein Homology	CDS	326762	327373	.	-	0	ID=cds284;Parent=gene292;Dbxref=Genbank:WP_002422247.1;Name=WP_002422247.1;gbkey=CDS;product=integrase;protein_id=WP_002422247.1;transl_table=11
NC_004088.1	RefSeq	gene	327602	328117	.	-	.	ID=gene293;Name=Y_RS01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01480;old_locus_tag=y0306
NC_004088.1	Protein Homology	CDS	327602	328117	.	-	0	ID=cds285;Parent=gene293;Dbxref=Genbank:WP_002209258.1;Name=WP_002209258.1;gbkey=CDS;product=transposase;protein_id=WP_002209258.1;transl_table=11
NC_004088.1	RefSeq	gene	328859	331495	.	-	.	ID=gene294;Name=Y_RS01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01485;old_locus_tag=y0308
NC_004088.1	Protein Homology	CDS	328859	331495	.	-	0	ID=cds286;Parent=gene294;Dbxref=Genbank:WP_002209491.1;Name=WP_002209491.1;Note=catalyzes the formation of oxaloacetate from phosphoenolpyruvate;gbkey=CDS;product=phosphoenolpyruvate carboxylase;protein_id=WP_002209491.1;transl_table=11
NC_004088.1	RefSeq	gene	331869	333032	.	-	.	ID=gene295;Name=Y_RS01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01490;old_locus_tag=y0309
NC_004088.1	Protein Homology	CDS	331869	333032	.	-	0	ID=cds287;Parent=gene295;Dbxref=Genbank:WP_002223919.1;Name=WP_002223919.1;Note=catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis;gbkey=CDS;product=acetylornithine deacetylase;protein_id=WP_002223919.1;transl_table=11
NC_004088.1	RefSeq	gene	333283	334287	.	+	.	ID=gene296;Name=Y_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01495;old_locus_tag=y0310
NC_004088.1	Protein Homology	CDS	333283	334287	.	+	0	ID=cds288;Parent=gene296;Dbxref=Genbank:WP_002209489.1;Name=WP_002209489.1;gbkey=CDS;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_002209489.1;transl_table=11
NC_004088.1	RefSeq	gene	334456	335229	.	+	.	ID=gene297;Name=Y_RS01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01500;old_locus_tag=y0311
NC_004088.1	Protein Homology	CDS	334456	335229	.	+	0	ID=cds289;Parent=gene297;Dbxref=Genbank:WP_002209488.1;Name=WP_002209488.1;gbkey=CDS;product=acetylglutamate kinase;protein_id=WP_002209488.1;transl_table=11
NC_004088.1	RefSeq	gene	335396	336769	.	+	.	ID=gene298;Name=Y_RS01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01505;old_locus_tag=y0312
NC_004088.1	Protein Homology	CDS	335396	336769	.	+	0	ID=cds290;Parent=gene298;Dbxref=Genbank:WP_002209487.1;Name=WP_002209487.1;Note=catalyzes the formation of arginine from (N-L-arginino)succinate;gbkey=CDS;product=argininosuccinate lyase;protein_id=WP_002209487.1;transl_table=11
NC_004088.1	RefSeq	gene	336932	337057	.	-	.	ID=gene299;Name=Y_RS01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01510
NC_004088.1	Protein Homology	CDS	336932	337057	.	-	0	ID=cds291;Parent=gene299;Dbxref=Genbank:WP_002209486.1;Name=WP_002209486.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209486.1;transl_table=11
NC_004088.1	RefSeq	gene	337368	339860	.	+	.	ID=gene300;Name=Y_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01515;old_locus_tag=y0313
NC_004088.1	Protein Homology	CDS	337368	339860	.	+	0	ID=cds292;Parent=gene300;Dbxref=Genbank:WP_002209485.1;Name=WP_002209485.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_002209485.1;transl_table=11
NC_004088.1	RefSeq	gene	340082	340699	.	+	.	ID=gene301;Name=Y_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01520;old_locus_tag=y0314
NC_004088.1	Protein Homology	CDS	340082	340699	.	+	0	ID=cds293;Parent=gene301;Dbxref=Genbank:WP_002209484.1;Name=WP_002209484.1;gbkey=CDS;product=hemophore HasA;protein_id=WP_002209484.1;transl_table=11
NC_004088.1	RefSeq	gene	340865	342673	.	+	.	ID=gene302;Name=Y_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01525;old_locus_tag=y0315
NC_004088.1	Protein Homology	CDS	340865	342673	.	+	0	ID=cds294;Parent=gene302;Dbxref=Genbank:WP_002231870.1;Name=WP_002231870.1;gbkey=CDS;product=peptidase;protein_id=WP_002231870.1;transl_table=11
NC_004088.1	RefSeq	gene	342749	344077	.	+	.	ID=gene303;Name=Y_RS01530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01530;old_locus_tag=y0316
NC_004088.1	Protein Homology	CDS	342749	344077	.	+	0	ID=cds295;Parent=gene303;Dbxref=Genbank:WP_002209482.1;Name=WP_002209482.1;gbkey=CDS;product=hemolysin secretion protein D;protein_id=WP_002209482.1;transl_table=11
NC_004088.1	RefSeq	gene	344142	344945	.	+	.	ID=gene304;Name=Y_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01535;old_locus_tag=y0317
NC_004088.1	Protein Homology	CDS	344142	344945	.	+	0	ID=cds296;Parent=gene304;Dbxref=Genbank:WP_002209481.1;Name=WP_002209481.1;gbkey=CDS;product=transporter TonB;protein_id=WP_002209481.1;transl_table=11
NC_004088.1	RefSeq	gene	345061	346524	.	-	.	ID=gene305;Name=Y_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01540;old_locus_tag=y0318
NC_004088.1	Protein Homology	CDS	345061	346524	.	-	0	ID=cds297;Parent=gene305;Dbxref=Genbank:WP_002209480.1;Name=WP_002209480.1;Note=Catalyzes the oxidation of dihydrolipoamide to lipoamide;gbkey=CDS;product=dihydrolipoamide dehydrogenase;protein_id=WP_002209480.1;transl_table=11
NC_004088.1	RefSeq	gene	346619	347350	.	-	.	ID=gene306;Name=Y_RS01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01545;old_locus_tag=y0319
NC_004088.1	Protein Homology	CDS	346619	347350	.	-	0	ID=cds298;Parent=gene306;Dbxref=Genbank:WP_002209479.1;Name=WP_002209479.1;gbkey=CDS;product=glutathione amide-dependent peroxidase;protein_id=WP_002209479.1;transl_table=11
NC_004088.1	RefSeq	gene	347497	348414	.	+	.	ID=gene307;Name=Y_RS01550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01550;old_locus_tag=y0320
NC_004088.1	Protein Homology	CDS	347497	348414	.	+	0	ID=cds299;Parent=gene307;Dbxref=Genbank:WP_002209478.1;Name=WP_002209478.1;Note=Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG%2C gor%2C ahpC%2C ahpF%2C oxyS%2C dps%2C fur and grxA;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209478.1;transl_table=11
NC_004088.1	RefSeq	gene	348397	349797	.	-	.	ID=gene308;Name=Y_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01555;old_locus_tag=y0321
NC_004088.1	Protein Homology	CDS	348397	349797	.	-	0	ID=cds300;Parent=gene308;Dbxref=Genbank:WP_002209477.1;Name=WP_002209477.1;Note=catalyzes the conversion of NADPH to NADH;gbkey=CDS;product=soluble pyridine nucleotide transhydrogenase;protein_id=WP_002209477.1;transl_table=11
NC_004088.1	RefSeq	gene	350015	350650	.	+	.	ID=gene309;Name=Y_RS01560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01560;old_locus_tag=y0322
NC_004088.1	Protein Homology	CDS	350015	350650	.	+	0	ID=cds301;Parent=gene309;Dbxref=Genbank:WP_002209476.1;Name=WP_002209476.1;Note=negatively controls the expression of fabA and fabB%2C genes involved in the unsaturated fatty acid biosynthesis;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209476.1;transl_table=11
NC_004088.1	RefSeq	gene	350663	351070	.	+	.	ID=gene310;Name=Y_RS01565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01565;old_locus_tag=y0323
NC_004088.1	Protein Homology	CDS	350663	351070	.	+	0	ID=cds302;Parent=gene310;Dbxref=Genbank:WP_002209475.1;Name=WP_002209475.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209475.1;transl_table=11
NC_004088.1	RefSeq	gene	351204	352307	.	-	.	ID=gene311;Name=Y_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01570;old_locus_tag=y0324
NC_004088.1	Protein Homology	CDS	351204	352307	.	-	0	ID=cds303;Parent=gene311;Dbxref=Genbank:WP_002209474.1;Name=WP_002209474.1;Note=catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs;gbkey=CDS;product=tRNA/tmRNA (uracil-C(5))-methyltransferase;protein_id=WP_002209474.1;transl_table=11
NC_004088.1	RefSeq	gene	352306	352551	.	+	.	ID=gene312;Name=Y_RS01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01575
NC_004088.1	Protein Homology	CDS	352306	352551	.	+	0	ID=cds304;Parent=gene312;Dbxref=Genbank:WP_002215343.1;Name=WP_002215343.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215343.1;transl_table=11
NC_004088.1	RefSeq	gene	352787	354664	.	+	.	ID=gene313;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=Y_RS01580;old_locus_tag=y0325
NC_004088.1	Protein Homology	CDS	352787	354664	.	+	0	ID=cds305;Parent=gene313;Dbxref=Genbank:WP_002228170.1;Name=WP_002228170.1;Note=involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space;gbkey=CDS;gene=btuB;product=vitamin B12 transporter BtuB;protein_id=WP_002228170.1;transl_table=11
NC_004088.1	RefSeq	gene	354609	355472	.	+	.	ID=gene314;Name=Y_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01585;old_locus_tag=y0326
NC_004088.1	Protein Homology	CDS	354609	355472	.	+	0	ID=cds306;Parent=gene314;Dbxref=Genbank:WP_002228171.1;Name=WP_002228171.1;Note=converts L-glutamate to D-glutamate%2C a component of peptidoglycan;gbkey=CDS;product=glutamate racemase;protein_id=WP_002228171.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	355494	361270	.	+	.	ID=id43;gbkey=repeat_region
NC_004088.1	RefSeq	gene	355926	357474	.	+	.	ID=gene315;Name=Y_RS01595;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS01595;old_locus_tag=yr005
NC_004088.1	RefSeq	rRNA	355926	357474	.	+	.	ID=rna8;Parent=gene315;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	exon	355926	357474	.	+	.	ID=id44;Parent=rna8;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	gene	357608	357683	.	+	.	ID=gene316;Name=Y_RS01600;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS01600;old_locus_tag=yt003
NC_004088.1	tRNAscan-SE	tRNA	357608	357683	.	+	.	ID=rna9;Parent=gene316;anticodon=(pos:357642..357644);gbkey=tRNA;product=tRNA-Glu
NC_004088.1	tRNAscan-SE	exon	357608	357683	.	+	.	ID=id45;Parent=rna9;anticodon=(pos:357642..357644);gbkey=tRNA;product=tRNA-Glu
NC_004088.1	RefSeq	gene	357927	360860	.	+	.	ID=gene317;Name=Y_RS01605;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS01605;old_locus_tag=yr006
NC_004088.1	RefSeq	rRNA	357927	360860	.	+	.	ID=rna10;Parent=gene317;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	exon	357927	360860	.	+	.	ID=id46;Parent=rna10;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	gene	360952	361067	.	+	.	ID=gene318;Name=Y_RS01610;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS01610;old_locus_tag=yr007
NC_004088.1	cmsearch	rRNA	360952	361067	.	+	.	ID=rna11;Parent=gene318;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	cmsearch	exon	360952	361067	.	+	.	ID=id47;Parent=rna11;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	RefSeq	gene	361193	361269	.	+	.	ID=gene319;Name=Y_RS01615;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS01615;old_locus_tag=yt004
NC_004088.1	tRNAscan-SE	tRNA	361193	361269	.	+	.	ID=rna12;Parent=gene319;anticodon=(pos:361227..361229);gbkey=tRNA;product=tRNA-Asp
NC_004088.1	tRNAscan-SE	exon	361193	361269	.	+	.	ID=id48;Parent=rna12;anticodon=(pos:361227..361229);gbkey=tRNA;product=tRNA-Asp
NC_004088.1	RefSeq	gene	361278	361353	.	+	.	ID=gene320;Name=Y_RS01620;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS01620;old_locus_tag=yt005
NC_004088.1	tRNAscan-SE	tRNA	361278	361353	.	+	.	ID=rna13;Parent=gene320;anticodon=(pos:361311..361313);gbkey=tRNA;product=tRNA-Trp
NC_004088.1	tRNAscan-SE	exon	361278	361353	.	+	.	ID=id49;Parent=rna13;anticodon=(pos:361311..361313);gbkey=tRNA;product=tRNA-Trp
NC_004088.1	RefSeq	gene	361480	361689	.	-	.	ID=gene321;Name=Y_RS01625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01625
NC_004088.1	Protein Homology	CDS	361480	361689	.	-	0	ID=cds307;Parent=gene321;Dbxref=Genbank:WP_016257685.1;Name=WP_016257685.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016257685.1;transl_table=11
NC_004088.1	RefSeq	gene	362330	363286	.	+	.	ID=gene322;Name=Y_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01630;old_locus_tag=y0328
NC_004088.1	Protein Homology	CDS	362330	363286	.	+	0	ID=cds308;Parent=gene322;Dbxref=Genbank:WP_002212024.1;Name=WP_002212024.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002212024.1;transl_table=11
NC_004088.1	RefSeq	gene	363372	364862	.	+	.	ID=gene323;Name=Y_RS01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01635;old_locus_tag=y0329
NC_004088.1	Protein Homology	CDS	363372	364862	.	+	0	ID=cds309;Parent=gene323;Dbxref=Genbank:WP_002212023.1;Name=WP_002212023.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002212023.1;transl_table=11
NC_004088.1	RefSeq	gene	364895	365893	.	+	.	ID=gene324;Name=Y_RS01640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01640;old_locus_tag=y0330
NC_004088.1	Protein Homology	CDS	364895	365893	.	+	0	ID=cds310;Parent=gene324;Dbxref=Genbank:WP_002220992.1;Name=WP_002220992.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002220992.1;transl_table=11
NC_004088.1	RefSeq	gene	365893	366885	.	+	.	ID=gene325;Name=Y_RS01645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01645;old_locus_tag=y0331
NC_004088.1	Protein Homology	CDS	365893	366885	.	+	0	ID=cds311;Parent=gene325;Dbxref=Genbank:WP_002212021.1;Name=WP_002212021.1;Note=membrane component of a putative sugar ABC transporter system;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002212021.1;transl_table=11
NC_004088.1	RefSeq	gene	366872	367753	.	-	.	ID=gene326;Name=Y_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01650;old_locus_tag=y0332
NC_004088.1	Protein Homology	CDS	366872	367753	.	-	0	ID=cds312;Parent=gene326;Dbxref=Genbank:WP_002212020.1;Name=WP_002212020.1;Note=Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002212020.1;transl_table=11
NC_004088.1	RefSeq	gene	367872	368210	.	+	.	ID=gene327;Name=Y_RS01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01655
NC_004088.1	Protein Homology	CDS	367872	368210	.	+	0	ID=cds313;Parent=gene327;Dbxref=Genbank:WP_002212019.1;Name=WP_002212019.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212019.1;transl_table=11
NC_004088.1	RefSeq	gene	368467	369990	.	-	.	ID=gene328;Name=Y_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01660;old_locus_tag=y0334
NC_004088.1	Protein Homology	CDS	368467	369990	.	-	0	ID=cds314;Parent=gene328;Dbxref=Genbank:WP_002212018.1;Name=WP_002212018.1;Note=among the AAA+ ATPases%2C the YifB protease family belongs to the Helix 2 insert clade%3B unknown function;gbkey=CDS;product=ATPase;protein_id=WP_002212018.1;transl_table=11
NC_004088.1	RefSeq	gene	370613	372259	.	+	.	ID=gene329;Name=Y_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01665;old_locus_tag=y0336
NC_004088.1	Protein Homology	CDS	370613	372259	.	+	0	ID=cds315;Parent=gene329;Dbxref=Genbank:WP_002212017.1;Name=WP_002212017.1;Note=catalyzes the formation of 2-acetolactate from pyruvate%3B also known as acetolactate synthase large subunit;gbkey=CDS;product=acetolactate synthase;protein_id=WP_002212017.1;transl_table=11
NC_004088.1	RefSeq	gene	372256	372513	.	+	.	ID=gene330;Name=ilvM;gbkey=Gene;gene=ilvM;gene_biotype=protein_coding;locus_tag=Y_RS01670
NC_004088.1	Protein Homology	CDS	372256	372513	.	+	0	ID=cds316;Parent=gene330;Dbxref=Genbank:WP_002212016.1;Name=WP_002212016.1;gbkey=CDS;gene=ilvM;product=acetolactate synthase;protein_id=WP_002212016.1;transl_table=11
NC_004088.1	RefSeq	gene	372536	373462	.	+	.	ID=gene331;Name=Y_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01675;old_locus_tag=y0337
NC_004088.1	Protein Homology	CDS	372536	373462	.	+	0	ID=cds317;Parent=gene331;Dbxref=Genbank:WP_002212015.1;Name=WP_002212015.1;gbkey=CDS;product=branched-chain amino acid aminotransferase;protein_id=WP_002212015.1;transl_table=11
NC_004088.1	RefSeq	gene	373773	375623	.	+	.	ID=gene332;Name=Y_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01680;old_locus_tag=y0338
NC_004088.1	Protein Homology	CDS	373773	375623	.	+	0	ID=cds318;Parent=gene332;Dbxref=Genbank:WP_002212014.1;Name=WP_002212014.1;Note=catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=dihydroxy-acid dehydratase;protein_id=WP_002212014.1;transl_table=11
NC_004088.1	RefSeq	gene	375629	377173	.	+	.	ID=gene333;Name=Y_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01685;old_locus_tag=y0339
NC_004088.1	Protein Homology	CDS	375629	377173	.	+	0	ID=cds319;Parent=gene333;Dbxref=Genbank:WP_002212013.1;Name=WP_002212013.1;Note=threonine deaminase%3B threonine dehydratase%3B in Escherichia coli%2C IlvA is part of the isoleucine biosynthetic pathway;gbkey=CDS;product=threonine dehydratase;protein_id=WP_002212013.1;transl_table=11
NC_004088.1	RefSeq	gene	377304	377768	.	-	.	ID=gene334;Name=Y_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01690;old_locus_tag=y0340
NC_004088.1	Protein Homology	CDS	377304	377768	.	-	0	ID=cds320;Parent=gene334;Dbxref=Genbank:WP_002216998.1;Name=WP_002216998.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216998.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	377689	378898	.	+	.	ID=id50;gbkey=repeat_region
NC_004088.1	RefSeq	gene	377848	378309	.	-	.	ID=gene335;Name=Y_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01695;old_locus_tag=y0341
NC_004088.1	Protein Homology	CDS	377848	378309	.	-	0	ID=cds321;Parent=gene335;Dbxref=Genbank:WP_002217000.1;Name=WP_002217000.1;gbkey=CDS;product=membrane protein;protein_id=WP_002217000.1;transl_table=11
NC_004088.1	RefSeq	gene	378389	378850	.	-	.	ID=gene336;Name=Y_RS01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01700;old_locus_tag=y0342
NC_004088.1	Protein Homology	CDS	378389	378850	.	-	0	ID=cds322;Parent=gene336;Dbxref=Genbank:WP_002212010.1;Name=WP_002212010.1;gbkey=CDS;product=membrane protein;protein_id=WP_002212010.1;transl_table=11
NC_004088.1	RefSeq	gene	378834	379505	.	-	.	ID=gene337;Name=Y_RS01705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01705
NC_004088.1	Protein Homology	CDS	378834	379505	.	-	0	ID=cds323;Parent=gene337;Dbxref=Genbank:WP_002230570.1;Name=WP_002230570.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002230570.1;transl_table=11
NC_004088.1	RefSeq	gene	379598	379753	.	-	.	ID=gene338;Name=Y_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01710
NC_004088.1	Protein Homology	CDS	379598	379753	.	-	0	ID=cds324;Parent=gene338;Dbxref=Genbank:WP_002229747.1;Name=WP_002229747.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002229747.1;transl_table=11
NC_004088.1	RefSeq	gene	380401	380610	.	+	.	ID=gene339;Name=Y_RS01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01715
NC_004088.1	Protein Homology	CDS	380401	380610	.	+	0	ID=cds325;Parent=gene339;Dbxref=Genbank:WP_002212009.1;Name=WP_002212009.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212009.1;transl_table=11
NC_004088.1	RefSeq	gene	380665	381546	.	-	.	ID=gene340;Name=Y_RS01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01720;old_locus_tag=y0344
NC_004088.1	Protein Homology	CDS	380665	381546	.	-	0	ID=cds326;Parent=gene340;Dbxref=Genbank:WP_002212008.1;Name=WP_002212008.1;Note=participates in controlling several genes involved in isoleucine and valine biosynthesis%3B activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002212008.1;transl_table=11
NC_004088.1	RefSeq	gene	381832	383310	.	+	.	ID=gene341;Name=Y_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01725;old_locus_tag=y0345
NC_004088.1	Protein Homology	CDS	381832	383310	.	+	0	ID=cds327;Parent=gene341;Dbxref=Genbank:WP_002212007.1;Name=WP_002212007.1;Note=catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=ketol-acid reductoisomerase;protein_id=WP_002212007.1;transl_table=11
NC_004088.1	RefSeq	gene	383491	383691	.	+	.	ID=gene342;Name=Y_RS01730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01730;old_locus_tag=y0346
NC_004088.1	Protein Homology	CDS	383491	383691	.	+	0	ID=cds328;Parent=gene342;Dbxref=Genbank:WP_002212006.1;Name=WP_002212006.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212006.1;transl_table=11
NC_004088.1	RefSeq	gene	383899	385329	.	+	.	ID=gene343;Name=Y_RS01735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01735;old_locus_tag=y0347
NC_004088.1	Protein Homology	CDS	383899	385329	.	+	0	ID=cds329;Parent=gene343;Dbxref=Genbank:WP_002212005.1;Name=WP_002212005.1;gbkey=CDS;product=colicin;protein_id=WP_002212005.1;transl_table=11
NC_004088.1	RefSeq	gene	385329	385592	.	+	.	ID=gene344;Name=Y_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01740
NC_004088.1	Protein Homology	CDS	385329	385592	.	+	0	ID=cds330;Parent=gene344;Dbxref=Genbank:WP_002212004.1;Name=WP_002212004.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212004.1;transl_table=11
NC_004088.1	RefSeq	gene	385845	386096	.	+	.	ID=gene345;Name=Y_RS01745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01745
NC_004088.1	Protein Homology	CDS	385845	386096	.	+	0	ID=cds331;Parent=gene345;Dbxref=Genbank:WP_002215823.1;Name=WP_002215823.1;gbkey=CDS;product=HNH nuclease;protein_id=WP_002215823.1;transl_table=11
NC_004088.1	RefSeq	gene	386098	386355	.	+	.	ID=gene346;Name=Y_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01750
NC_004088.1	Protein Homology	CDS	386098	386355	.	+	0	ID=cds332;Parent=gene346;Dbxref=Genbank:WP_002212003.1;Name=WP_002212003.1;gbkey=CDS;product=colicin transporter;protein_id=WP_002212003.1;transl_table=11
NC_004088.1	RefSeq	gene	386808	386966	.	-	.	ID=gene347;Name=Y_RS01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01755
NC_004088.1	Protein Homology	CDS	386808	386966	.	-	0	ID=cds333;Parent=gene347;Dbxref=Genbank:WP_002212002.1;Name=WP_002212002.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212002.1;transl_table=11
NC_004088.1	RefSeq	gene	386990	387808	.	-	.	ID=gene348;Name=Y_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01760;old_locus_tag=y0348
NC_004088.1	Protein Homology	CDS	386990	387808	.	-	0	ID=cds334;Parent=gene348;Dbxref=Genbank:WP_002215825.1;Name=WP_002215825.1;gbkey=CDS;product=molecular chaperone;protein_id=WP_002215825.1;transl_table=11
NC_004088.1	RefSeq	gene	387774	389051	.	-	.	ID=gene349;Name=Y_RS01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01765;old_locus_tag=y0349
NC_004088.1	Protein Homology	CDS	387774	389051	.	-	0	ID=cds335;Parent=gene349;Dbxref=Genbank:WP_002355452.1;Name=WP_002355452.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002355452.1;transl_table=11
NC_004088.1	RefSeq	gene	389158	391785	.	-	.	ID=gene350;Name=Y_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01770;old_locus_tag=y0350
NC_004088.1	Protein Homology	CDS	389158	391785	.	-	0	ID=cds336;Parent=gene350;Dbxref=Genbank:WP_002211999.1;Name=WP_002211999.1;gbkey=CDS;product=outer membrane usher protein;protein_id=WP_002211999.1;transl_table=11
NC_004088.1	RefSeq	gene	391813	392544	.	-	.	ID=gene351;Name=Y_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01775;old_locus_tag=y0351
NC_004088.1	Protein Homology	CDS	391813	392544	.	-	0	ID=cds337;Parent=gene351;Dbxref=Genbank:WP_002211998.1;Name=WP_002211998.1;gbkey=CDS;product=gram-negative pili assembly chaperone;protein_id=WP_002211998.1;transl_table=11
NC_004088.1	RefSeq	gene	392608	393138	.	-	.	ID=gene352;Name=Y_RS01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01780;old_locus_tag=y0352
NC_004088.1	Protein Homology	CDS	392608	393138	.	-	0	ID=cds338;Parent=gene352;Dbxref=Genbank:WP_002211997.1;Name=WP_002211997.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002211997.1;transl_table=11
NC_004088.1	RefSeq	gene	393449	393625	.	+	.	ID=gene353;Name=Y_RS01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01785
NC_004088.1	Protein Homology	CDS	393449	393625	.	+	0	ID=cds339;Parent=gene353;Dbxref=Genbank:WP_002231894.1;Name=WP_002231894.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002231894.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	393911	395228	.	+	.	ID=id51;gbkey=repeat_region
NC_004088.1	RefSeq	region	393913	395227	.	-	.	ID=id52;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	393948	395156	.	-	.	ID=gene354;Name=Y_RS01790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01790;old_locus_tag=y0353
NC_004088.1	Protein Homology	CDS	393948	395156	.	-	0	ID=cds340;Parent=gene354;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	395253	396044	.	-	.	ID=gene355;Name=Y_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01795;old_locus_tag=y0354
NC_004088.1	Protein Homology	CDS	395253	396044	.	-	0	ID=cds341;Parent=gene355;Dbxref=Genbank:WP_002211996.1;Name=WP_002211996.1;gbkey=CDS;product=glutamine cyclotransferase;protein_id=WP_002211996.1;transl_table=11
NC_004088.1	RefSeq	gene	396283	396564	.	-	.	ID=gene356;Name=Y_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01800;old_locus_tag=y0355
NC_004088.1	Protein Homology	CDS	396283	396564	.	-	0	ID=cds342;Parent=gene356;Dbxref=Genbank:WP_002211995.1;Name=WP_002211995.1;Note=rotamase C%3B accelerates isomerization of the peptidyl prolyl bond;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_002211995.1;transl_table=11
NC_004088.1	RefSeq	gene	396584	396769	.	-	.	ID=gene357;Name=Y_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01805
NC_004088.1	Protein Homology	CDS	396584	396769	.	-	0	ID=cds343;Parent=gene357;Dbxref=Genbank:WP_002215828.1;Name=WP_002215828.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215828.1;transl_table=11
NC_004088.1	RefSeq	gene	396768	398789	.	+	.	ID=gene358;Name=Y_RS01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01810;old_locus_tag=y0356
NC_004088.1	Protein Homology	CDS	396768	398789	.	+	0	ID=cds344;Parent=gene358;Dbxref=Genbank:WP_002211993.1;Name=WP_002211993.1;Note=single-stranded DNA-dependent ATPase%3B initiates unwinding at a nick in the DNA%3B involved in DNA replication;gbkey=CDS;product=ATP-dependent DNA helicase Rep;protein_id=WP_002211993.1;transl_table=11
NC_004088.1	RefSeq	gene	398957	399967	.	-	.	ID=gene359;Name=Y_RS01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01815
NC_004088.1	Protein Homology	CDS	398957	399967	.	-	0	ID=cds345;Parent=gene359;Dbxref=Genbank:WP_002355446.1;Name=WP_002355446.1;gbkey=CDS;product=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase;protein_id=WP_002355446.1;transl_table=11
NC_004088.1	RefSeq	gene	399946	400452	.	-	.	ID=gene360;Name=Y_RS01820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01820
NC_004088.1	Protein Homology	CDS	399946	400452	.	-	0	ID=cds346;Parent=gene360;Dbxref=Genbank:WP_002228244.1;Name=WP_002228244.1;gbkey=CDS;product=guanosine-5'-triphosphate%2C3'-diphosphatepyrophosphatase;protein_id=WP_002228244.1;transl_table=11
NC_004088.1	RefSeq	gene	400456	401742	.	-	.	ID=gene361;Name=Y_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01825;old_locus_tag=y0359
NC_004088.1	Protein Homology	CDS	400456	401742	.	-	0	ID=cds347;Parent=gene361;Dbxref=Genbank:WP_002228177.1;Name=WP_002228177.1;Note=enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome%2C a multi-enzyme complex important in RNA processing and messenger RNA degradation;gbkey=CDS;product=ATP-dependent RNA helicase RhlB;protein_id=WP_002228177.1;transl_table=11
NC_004088.1	RefSeq	gene	401861	402187	.	+	.	ID=gene362;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=Y_RS01830;old_locus_tag=y0360
NC_004088.1	Protein Homology	CDS	401861	402187	.	+	0	ID=cds348;Parent=gene362;Dbxref=Genbank:WP_002211990.1;Name=WP_002211990.1;gbkey=CDS;gene=trxA;product=thioredoxin;protein_id=WP_002211990.1;transl_table=11
NC_004088.1	RefSeq	gene	402667	403926	.	+	.	ID=gene363;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=Y_RS01835;old_locus_tag=y0361
NC_004088.1	Protein Homology	CDS	402667	403926	.	+	0	ID=cds349;Parent=gene363;Dbxref=Genbank:WP_002211989.1;Name=WP_002211989.1;Note=An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes;gbkey=CDS;gene=rho;product=transcription termination factor Rho;protein_id=WP_002211989.1;transl_table=11
NC_004088.1	RefSeq	gene	404476	405558	.	+	.	ID=gene364;Name=Y_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01840;old_locus_tag=y0362
NC_004088.1	Protein Homology	CDS	404476	405558	.	+	0	ID=cds350;Parent=gene364;Dbxref=Genbank:WP_002216793.1;Name=WP_002216793.1;Note=catalyzes the formation of alpha-N-acetylglucosaminyl-pyrophosphoryl-undecaprenyl from alpha-N-acetylglucosaminyl 1-phosphate and the lipid carrier undecaprenyl phosphate;gbkey=CDS;product=UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase;protein_id=WP_002216793.1;transl_table=11
NC_004088.1	RefSeq	gene	405579	406655	.	+	.	ID=gene365;Name=Y_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01845;old_locus_tag=y0363
NC_004088.1	Protein Homology	CDS	405579	406655	.	+	0	ID=cds351;Parent=gene365;Dbxref=Genbank:WP_002226022.1;Name=WP_002226022.1;Note=Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_002226022.1;transl_table=11
NC_004088.1	RefSeq	gene	406936	408066	.	+	.	ID=gene366;Name=Y_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01850;old_locus_tag=y0364
NC_004088.1	Protein Homology	CDS	406936	408066	.	+	0	ID=cds352;Parent=gene366;Dbxref=Genbank:WP_002211986.1;Name=WP_002211986.1;gbkey=CDS;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_002211986.1;transl_table=11
NC_004088.1	RefSeq	gene	408063	409325	.	+	.	ID=gene367;Name=wecC;gbkey=Gene;gene=wecC;gene_biotype=protein_coding;locus_tag=Y_RS01855;old_locus_tag=y0365
NC_004088.1	Protein Homology	CDS	408063	409325	.	+	0	ID=cds353;Parent=gene367;Dbxref=Genbank:WP_002211985.1;Name=WP_002211985.1;Note=catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid;gbkey=CDS;gene=wecC;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_002211985.1;transl_table=11
NC_004088.1	RefSeq	gene	409322	410389	.	+	.	ID=gene368;Name=Y_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01860;old_locus_tag=y0366
NC_004088.1	Protein Homology	CDS	409322	410389	.	+	0	ID=cds354;Parent=gene368;Dbxref=Genbank:WP_002211984.1;Name=WP_002211984.1;gbkey=CDS;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_002211984.1;transl_table=11
NC_004088.1	RefSeq	gene	410684	411565	.	+	.	ID=gene369;Name=Y_RS01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01865;old_locus_tag=y0367
NC_004088.1	Protein Homology	CDS	410684	411565	.	+	0	ID=cds355;Parent=gene369;Dbxref=Genbank:WP_002211983.1;Name=WP_002211983.1;gbkey=CDS;product=glucose-1-phosphate thymidylyltransferase;protein_id=WP_002211983.1;transl_table=11
NC_004088.1	RefSeq	gene	411543	412280	.	+	.	ID=gene370;Name=Y_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01870;old_locus_tag=y0368
NC_004088.1	Protein Homology	CDS	411543	412280	.	+	0	ID=cds356;Parent=gene370;Dbxref=Genbank:WP_002211982.1;Name=WP_002211982.1;gbkey=CDS;product=TDP-fucosamine acetyltransferase;protein_id=WP_002211982.1;transl_table=11
NC_004088.1	RefSeq	gene	412282	413412	.	+	.	ID=gene371;Name=Y_RS01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01875;old_locus_tag=y0369
NC_004088.1	Protein Homology	CDS	412282	413412	.	+	0	ID=cds357;Parent=gene371;Dbxref=Genbank:WP_002211981.1;Name=WP_002211981.1;Note=catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis;gbkey=CDS;product=TDP-4-oxo-6-deoxy-D-glucose aminotransferase;protein_id=WP_002211981.1;transl_table=11
NC_004088.1	RefSeq	gene	413414	414670	.	+	.	ID=gene372;Name=Y_RS01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01880;old_locus_tag=y0370
NC_004088.1	Protein Homology	CDS	413414	414670	.	+	0	ID=cds358;Parent=gene372;Dbxref=Genbank:WP_002211980.1;Name=WP_002211980.1;Note=involved in the movement of lipid III across the membrane;gbkey=CDS;product=translocase;protein_id=WP_002211980.1;transl_table=11
NC_004088.1	RefSeq	gene	414693	415778	.	+	.	ID=gene373;Name=Y_RS01885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01885;old_locus_tag=y0371
NC_004088.1	Protein Homology	CDS	414693	415778	.	+	0	ID=cds359;Parent=gene373;Dbxref=Genbank:WP_002211979.1;Name=WP_002211979.1;Note=catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis;gbkey=CDS;product=TDP-N-acetylfucosamine--lipid II N-acetylfucosaminyltransferase;protein_id=WP_002211979.1;transl_table=11
NC_004088.1	RefSeq	gene	415775	417139	.	+	.	ID=gene374;Name=Y_RS01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01890;old_locus_tag=y0372
NC_004088.1	Protein Homology	CDS	415775	417139	.	+	0	ID=cds360;Parent=gene374;Dbxref=Genbank:WP_002211978.1;Name=WP_002211978.1;Note=enterobacterial common antigen polymerase;gbkey=CDS;product=polymerase;protein_id=WP_002211978.1;transl_table=11
NC_004088.1	RefSeq	gene	417148	417888	.	+	.	ID=gene375;Name=Y_RS01895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01895;old_locus_tag=y0373
NC_004088.1	Protein Homology	CDS	417148	417888	.	+	0	ID=cds361;Parent=gene375;Dbxref=Genbank:WP_002211977.1;Name=WP_002211977.1;gbkey=CDS;product=UDP-N-acetyl-D-mannosaminuronic acid transferase;protein_id=WP_002211977.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	418162	418287	.	+	.	ID=id53;gbkey=repeat_region
NC_004088.1	RefSeq	gene	418412	419803	.	+	.	ID=gene376;Name=Y_RS01900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01900;old_locus_tag=y0375
NC_004088.1	Protein Homology	CDS	418412	419803	.	+	0	ID=cds362;Parent=gene376;Dbxref=Genbank:WP_002220976.1;Name=WP_002220976.1;Note=involved in the transport across the cytoplasmic membrane of D-alanine%2C D-serine and glycine;gbkey=CDS;product=alanine glycine permease;protein_id=WP_002220976.1;transl_table=11
NC_004088.1	RefSeq	gene	419952	420028	.	+	.	ID=gene377;Name=Y_RS01905;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS01905;old_locus_tag=yt006
NC_004088.1	tRNAscan-SE	tRNA	419952	420028	.	+	.	ID=rna14;Parent=gene377;anticodon=(pos:419986..419988);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	tRNAscan-SE	exon	419952	420028	.	+	.	ID=id54;Parent=rna14;anticodon=(pos:419986..419988);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	RefSeq	gene	420112	420187	.	+	.	ID=gene378;Name=Y_RS01910;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS01910;old_locus_tag=yt007
NC_004088.1	tRNAscan-SE	tRNA	420112	420187	.	+	.	ID=rna15;Parent=gene378;anticodon=(pos:420145..420147);gbkey=tRNA;product=tRNA-His
NC_004088.1	tRNAscan-SE	exon	420112	420187	.	+	.	ID=id55;Parent=rna15;anticodon=(pos:420145..420147);gbkey=tRNA;product=tRNA-His
NC_004088.1	RefSeq	gene	420204	420290	.	+	.	ID=gene379;Name=Y_RS01915;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS01915;old_locus_tag=yt008
NC_004088.1	tRNAscan-SE	tRNA	420204	420290	.	+	.	ID=rna16;Parent=gene379;anticodon=(pos:420238..420240);gbkey=tRNA;product=tRNA-Leu
NC_004088.1	tRNAscan-SE	exon	420204	420290	.	+	.	ID=id56;Parent=rna16;anticodon=(pos:420238..420240);gbkey=tRNA;product=tRNA-Leu
NC_004088.1	RefSeq	gene	420366	420442	.	+	.	ID=gene380;Name=Y_RS01920;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS01920;old_locus_tag=yt009
NC_004088.1	tRNAscan-SE	tRNA	420366	420442	.	+	.	ID=rna17;Parent=gene380;anticodon=(pos:420400..420402);gbkey=tRNA;product=tRNA-Pro
NC_004088.1	tRNAscan-SE	exon	420366	420442	.	+	.	ID=id57;Parent=rna17;anticodon=(pos:420400..420402);gbkey=tRNA;product=tRNA-Pro
NC_004088.1	RefSeq	repeat_region	421158	421879	.	+	.	ID=id58;gbkey=repeat_region
NC_004088.1	RefSeq	region	421164	421873	.	+	.	ID=id59;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	421309	421767	.	+	.	ID=gene381;Name=Y_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01925;old_locus_tag=y0377
NC_004088.1	Protein Homology	CDS	421309	421767	.	+	0	ID=cds363;Parent=gene381;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	421960	423180	.	-	.	ID=gene382;Name=Y_RS01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01930;old_locus_tag=y0378
NC_004088.1	Protein Homology	CDS	421960	423180	.	-	0	ID=cds364;Parent=gene382;Dbxref=Genbank:WP_002211462.1;Name=WP_002211462.1;gbkey=CDS;product=protoheme IX biogenesis protein;protein_id=WP_002211462.1;transl_table=11
NC_004088.1	RefSeq	gene	423183	424307	.	-	.	ID=gene383;Name=Y_RS01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01935;old_locus_tag=y0379
NC_004088.1	Protein Homology	CDS	423183	424307	.	-	0	ID=cds365;Parent=gene383;Dbxref=Genbank:WP_002211463.1;Name=WP_002211463.1;gbkey=CDS;product=uroporphyrinogen III methyltransferase;protein_id=WP_002211463.1;transl_table=11
NC_004088.1	RefSeq	gene	424338	425087	.	-	.	ID=gene384;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=Y_RS01940;old_locus_tag=y0380
NC_004088.1	Protein Homology	CDS	424338	425087	.	-	0	ID=cds366;Parent=gene384;Dbxref=Genbank:WP_002211464.1;Name=WP_002211464.1;Note=catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane%3B functions in tetrapyrrole and heme biosynthesis;gbkey=CDS;gene=hemD;product=uroporphyrinogen III methyltransferase;protein_id=WP_002211464.1;transl_table=11
NC_004088.1	RefSeq	gene	425084	426025	.	-	.	ID=gene385;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=Y_RS01945;old_locus_tag=y0381
NC_004088.1	Protein Homology	CDS	425084	426025	.	-	0	ID=cds367;Parent=gene385;Dbxref=Genbank:WP_002211465.1;Name=WP_002211465.1;Note=transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis;gbkey=CDS;gene=hemC;product=porphobilinogen deaminase;protein_id=WP_002211465.1;transl_table=11
NC_004088.1	RefSeq	gene	426519	429071	.	+	.	ID=gene386;Name=cyaA;gbkey=Gene;gene=cyaA;gene_biotype=protein_coding;locus_tag=Y_RS01950;old_locus_tag=y0382
NC_004088.1	Protein Homology	CDS	426519	429071	.	+	0	ID=cds368;Parent=gene386;Dbxref=Genbank:WP_002211468.1;Name=WP_002211468.1;Note=catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP;gbkey=CDS;gene=cyaA;product=adenylate cyclase;protein_id=WP_002211468.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	429108	429280	.	+	.	ID=id60;gbkey=repeat_region
NC_004088.1	RefSeq	gene	429315	429635	.	-	.	ID=gene387;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=Y_RS01955;old_locus_tag=y0383
NC_004088.1	Protein Homology	CDS	429315	429635	.	-	0	ID=cds369;Parent=gene387;Dbxref=Genbank:WP_002211469.1;Name=WP_002211469.1;Note=iron-dependent inhibitor of iron-sulfur cluster formation%3B iron-binding and oxidizing protein%3B defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease%3B based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly;gbkey=CDS;gene=cyaY;product=protein CyaY;protein_id=WP_002211469.1;transl_table=11
NC_004088.1	RefSeq	gene	429787	429975	.	+	.	ID=gene388;Name=Y_RS01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01960;old_locus_tag=y0384
NC_004088.1	Protein Homology	CDS	429787	429975	.	+	0	ID=cds370;Parent=gene388;Dbxref=Genbank:WP_002211470.1;Name=WP_002211470.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002211470.1;transl_table=11
NC_004088.1	RefSeq	gene	430159	430983	.	+	.	ID=gene389;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=Y_RS01965;old_locus_tag=y0385
NC_004088.1	Protein Homology	CDS	430159	430983	.	+	0	ID=cds371;Parent=gene389;Dbxref=Genbank:WP_002211471.1;Name=WP_002211471.1;Note=involved in lysine biosynthesis%3B DAP epimerase%3B produces DL-diaminopimelate from LL-diaminopimelate;gbkey=CDS;gene=dapF;product=diaminopimelate epimerase;protein_id=WP_002211471.1;transl_table=11
NC_004088.1	RefSeq	gene	431048	431752	.	+	.	ID=gene390;Name=Y_RS01970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01970;old_locus_tag=y0386
NC_004088.1	Protein Homology	CDS	431048	431752	.	+	0	ID=cds372;Parent=gene390;Dbxref=Genbank:WP_002211472.1;Name=WP_002211472.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211472.1;transl_table=11
NC_004088.1	RefSeq	gene	431749	432660	.	+	.	ID=gene391;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=Y_RS01975;old_locus_tag=y0387
NC_004088.1	Protein Homology	CDS	431749	432660	.	+	0	ID=cds373;Parent=gene391;Dbxref=Genbank:WP_002211473.1;Name=WP_002211473.1;Note=site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs;gbkey=CDS;gene=xerC;product=tyrosine recombinase XerC;protein_id=WP_002211473.1;transl_table=11
NC_004088.1	RefSeq	gene	432660	433376	.	+	.	ID=gene392;Name=Y_RS01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01980;old_locus_tag=y0388
NC_004088.1	Protein Homology	CDS	432660	433376	.	+	0	ID=cds374;Parent=gene392;Dbxref=Genbank:WP_002211474.1;Name=WP_002211474.1;Note=YigB%3B member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein%3B unknown function;gbkey=CDS;product=flavin mononucleotide phosphatase;protein_id=WP_002211474.1;transl_table=11
NC_004088.1	RefSeq	gene	433478	435640	.	+	.	ID=gene393;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;locus_tag=Y_RS01985;old_locus_tag=y0389
NC_004088.1	Protein Homology	CDS	433478	435640	.	+	0	ID=cds375;Parent=gene393;Dbxref=Genbank:WP_002211475.1;Name=WP_002211475.1;Note=unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present%3B involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.;gbkey=CDS;gene=uvrD;product=DNA-dependent helicase;protein_id=WP_002211475.1;transl_table=11
NC_004088.1	RefSeq	gene	435754	436440	.	-	.	ID=gene394;Name=Y_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01990;old_locus_tag=y0390
NC_004088.1	Protein Homology	CDS	435754	436440	.	-	0	ID=cds376;Parent=gene394;Dbxref=Genbank:WP_002211476.1;Name=WP_002211476.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_002211476.1;transl_table=11
NC_004088.1	RefSeq	gene	436868	438085	.	+	.	ID=gene395;Name=Y_RS01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS01995;old_locus_tag=y0391
NC_004088.1	Protein Homology	CDS	436868	438085	.	+	0	ID=cds377;Parent=gene395;Dbxref=Genbank:WP_002211477.1;Name=WP_002211477.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211477.1;transl_table=11
NC_004088.1	RefSeq	gene	438111	438941	.	+	.	ID=gene396;Name=Y_RS02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02000;old_locus_tag=y0392
NC_004088.1	Protein Homology	CDS	438111	438941	.	+	0	ID=cds378;Parent=gene396;Dbxref=Genbank:WP_002211478.1;Name=WP_002211478.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211478.1;transl_table=11
NC_004088.1	RefSeq	gene	439590	440540	.	+	.	ID=gene397;Name=Y_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02005;old_locus_tag=y0393
NC_004088.1	Protein Homology	CDS	439590	440540	.	+	0	ID=cds379;Parent=gene397;Dbxref=Genbank:WP_002211480.1;Name=WP_002211480.1;Note=responsible for the influx of magnesium ions;gbkey=CDS;product=magnesium transporter CorA;protein_id=WP_002211480.1;transl_table=11
NC_004088.1	RefSeq	gene	440638	441528	.	-	.	ID=gene398;Name=Y_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02010;old_locus_tag=y0394
NC_004088.1	Protein Homology	CDS	440638	441528	.	-	0	ID=cds380;Parent=gene398;Dbxref=Genbank:WP_002211481.1;Name=WP_002211481.1;gbkey=CDS;product=chloramphenicol resistance permease RarD;protein_id=WP_002211481.1;transl_table=11
NC_004088.1	RefSeq	gene	441615	442085	.	-	.	ID=gene399;Name=Y_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02015;old_locus_tag=y0395
NC_004088.1	Protein Homology	CDS	441615	442085	.	-	0	ID=cds381;Parent=gene399;Dbxref=Genbank:WP_002211482.1;Name=WP_002211482.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211482.1;transl_table=11
NC_004088.1	RefSeq	gene	442307	443185	.	+	.	ID=gene400;Name=Y_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02020;old_locus_tag=y0396
NC_004088.1	Protein Homology	CDS	442307	443185	.	+	0	ID=cds382;Parent=gene400;Dbxref=Genbank:WP_002211483.1;Name=WP_002211483.1;Note=catalyzes the hydrolysis of phosphatidylcholine;gbkey=CDS;product=phospholipase A;protein_id=WP_002211483.1;transl_table=11
NC_004088.1	RefSeq	gene	443263	445095	.	+	.	ID=gene401;Name=Y_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02025;old_locus_tag=y0397
NC_004088.1	Protein Homology	CDS	443263	445095	.	+	0	ID=cds383;Parent=gene401;Dbxref=Genbank:WP_002211484.1;Name=WP_002211484.1;Note=functions in blocking illegitimate recombination%2C enhancing topoisomerase activity%2C initiating SOS signaling and clearing blocked replication forks%3B component of the RecF recombinational pathway;gbkey=CDS;product=ATP-dependent DNA helicase RecQ;protein_id=WP_002211484.1;transl_table=11
NC_004088.1	RefSeq	gene	445202	445822	.	+	.	ID=gene402;Name=Y_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02030;old_locus_tag=y0398
NC_004088.1	Protein Homology	CDS	445202	445822	.	+	0	ID=cds384;Parent=gene402;Dbxref=Genbank:WP_002211485.1;Name=WP_002211485.1;gbkey=CDS;product=threonine transporter RhtB;protein_id=WP_002211485.1;transl_table=11
NC_004088.1	RefSeq	gene	445873	446493	.	-	.	ID=gene403;Name=rhtB;gbkey=Gene;gene=rhtB;gene_biotype=protein_coding;locus_tag=Y_RS02035;old_locus_tag=y0399
NC_004088.1	Protein Homology	CDS	445873	446493	.	-	0	ID=cds385;Parent=gene403;Dbxref=Genbank:WP_002211486.1;Name=WP_002211486.1;gbkey=CDS;gene=rhtB;product=threonine transporter RhtB;protein_id=WP_002211486.1;transl_table=11
NC_004088.1	RefSeq	gene	446689	447702	.	+	.	ID=gene404;Name=Y_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02040;old_locus_tag=y0400
NC_004088.1	Protein Homology	CDS	446689	447702	.	+	0	ID=cds386;Parent=gene404;Dbxref=Genbank:WP_002211487.1;Name=WP_002211487.1;Note=lecithinase B%3B catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine%3B can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates;gbkey=CDS;product=lysophospholipase L2;protein_id=WP_002211487.1;transl_table=11
NC_004088.1	RefSeq	gene	447737	448546	.	+	.	ID=gene405;Name=Y_RS02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02045;old_locus_tag=y0401
NC_004088.1	Protein Homology	CDS	447737	448546	.	+	0	ID=cds387;Parent=gene405;Dbxref=Genbank:WP_002211488.1;Name=WP_002211488.1;gbkey=CDS;product=hydrolase;protein_id=WP_002211488.1;transl_table=11
NC_004088.1	RefSeq	gene	448823	450022	.	+	.	ID=gene406;Name=Y_RS02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02050;old_locus_tag=y0402
NC_004088.1	Protein Homology	CDS	448823	450022	.	+	0	ID=cds388;Parent=gene406;Dbxref=Genbank:WP_002366764.1;Name=WP_002366764.1;gbkey=CDS;product=viral enhancin family protein;protein_id=WP_002366764.1;transl_table=11
NC_004088.1	RefSeq	gene	450096	451211	.	-	.	ID=gene407;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;locus_tag=Y_RS02055;old_locus_tag=y0403
NC_004088.1	Protein Homology	CDS	450096	451211	.	-	0	ID=cds389;Parent=gene407;Dbxref=Genbank:WP_002211490.1;Name=WP_002211490.1;Note=hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols%3B periplasmic;gbkey=CDS;gene=glpQ;product=glycerophosphodiester phosphodiesterase;protein_id=WP_002211490.1;transl_table=11
NC_004088.1	RefSeq	gene	451564	451662	.	+	.	ID=gene408;Name=Y_RS02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02060
NC_004088.1	Protein Homology	CDS	451564	451662	.	+	0	ID=cds390;Parent=gene408;Dbxref=Genbank:WP_002216569.1;Name=WP_002216569.1;gbkey=CDS;product=sn-glycerol-3-phosphate dehydrogenase subunit A;protein_id=WP_002216569.1;transl_table=11
NC_004088.1	RefSeq	gene	451836	453491	.	+	.	ID=gene409;Name=Y_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02065;old_locus_tag=y0404
NC_004088.1	Protein Homology	CDS	451836	453491	.	+	0	ID=cds391;Parent=gene409;Dbxref=Genbank:WP_002211491.1;Name=WP_002211491.1;gbkey=CDS;product=sn-glycerol-3-phosphate dehydrogenase subunit A;protein_id=WP_002211491.1;transl_table=11
NC_004088.1	RefSeq	gene	453481	454755	.	+	.	ID=gene410;Name=Y_RS02070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02070;old_locus_tag=y0405
NC_004088.1	Protein Homology	CDS	453481	454755	.	+	0	ID=cds392;Parent=gene410;Dbxref=Genbank:WP_002211492.1;Name=WP_002211492.1;Note=sn-glycerol-3-phosphate dehydrogenase (anaerobic)%3B catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate%3B part of GlpABC complex%3B presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters;gbkey=CDS;product=anaerobic glycerol-3-phosphate dehydrogenase subunit B;protein_id=WP_002211492.1;transl_table=11
NC_004088.1	RefSeq	gene	454752	456047	.	+	.	ID=gene411;Name=glpC;gbkey=Gene;gene=glpC;gene_biotype=protein_coding;locus_tag=Y_RS02075;old_locus_tag=y0406
NC_004088.1	Protein Homology	CDS	454752	456047	.	+	0	ID=cds393;Parent=gene411;Dbxref=Genbank:WP_002211493.1;Name=WP_002211493.1;Note=anaerobic%3B with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate;gbkey=CDS;gene=glpC;product=sn-glycerol-3-phosphate dehydrogenase subunit C;protein_id=WP_002211493.1;transl_table=11
NC_004088.1	RefSeq	gene	456209	456736	.	-	.	ID=gene412;Name=Y_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02080;old_locus_tag=y0407
NC_004088.1	Protein Homology	CDS	456209	456736	.	-	0	ID=cds394;Parent=gene412;Dbxref=Genbank:WP_002211494.1;Name=WP_002211494.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002211494.1;transl_table=11
NC_004088.1	RefSeq	gene	456866	457534	.	-	.	ID=gene413;Name=Y_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02085;old_locus_tag=y0408
NC_004088.1	Protein Homology	CDS	456866	457534	.	-	0	ID=cds395;Parent=gene413;Dbxref=Genbank:WP_002211495.1;Name=WP_002211495.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211495.1;transl_table=11
NC_004088.1	RefSeq	gene	457818	458072	.	+	.	ID=gene414;Name=Y_RS02090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02090;old_locus_tag=y0409
NC_004088.1	Protein Homology	CDS	457818	458072	.	+	0	ID=cds396;Parent=gene414;Dbxref=Genbank:WP_002215973.1;Name=WP_002215973.1;Note=TusA%3B transfers sulfur to TusBCD complex%3B involved in thiouridation of U34 position of some tRNAs;gbkey=CDS;product=sulfurtransferase TusA;protein_id=WP_002215973.1;transl_table=11
NC_004088.1	RefSeq	gene	458172	460538	.	-	.	ID=gene415;Name=zntA;gbkey=Gene;gene=zntA;gene_biotype=protein_coding;locus_tag=Y_RS02095;old_locus_tag=y0410
NC_004088.1	Protein Homology	CDS	458172	460538	.	-	0	ID=cds397;Parent=gene415;Dbxref=Genbank:WP_002231925.1;Name=WP_002231925.1;Note=P-type ATPase involved in the export of lead%2C cadmium%2C zinc and mercury;gbkey=CDS;gene=zntA;product=cadmium-transporting ATPase;protein_id=WP_002231925.1;transl_table=11
NC_004088.1	RefSeq	gene	460952	461578	.	-	.	ID=gene416;Name=Y_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02100;old_locus_tag=y0411
NC_004088.1	Protein Homology	CDS	460952	461578	.	-	0	ID=cds398;Parent=gene416;Dbxref=Genbank:WP_002211498.1;Name=WP_002211498.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211498.1;transl_table=11
NC_004088.1	RefSeq	gene	461868	462188	.	+	.	ID=gene417;Name=Y_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02105;old_locus_tag=y0412
NC_004088.1	Protein Homology	CDS	461868	462188	.	+	0	ID=cds399;Parent=gene417;Dbxref=Genbank:WP_002211499.1;Name=WP_002211499.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211499.1;transl_table=11
NC_004088.1	RefSeq	gene	462400	462819	.	+	.	ID=gene418;Name=Y_RS02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02110;old_locus_tag=y0413
NC_004088.1	Protein Homology	CDS	462400	462819	.	+	0	ID=cds400;Parent=gene418;Dbxref=Genbank:WP_002211500.1;Name=WP_002211500.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211500.1;transl_table=11
NC_004088.1	RefSeq	gene	463006	463278	.	-	.	ID=gene419;Name=Y_RS02115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02115;old_locus_tag=y0414
NC_004088.1	Protein Homology	CDS	463006	463278	.	-	0	ID=cds401;Parent=gene419;Dbxref=Genbank:WP_002211501.1;Name=WP_002211501.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211501.1;transl_table=11
NC_004088.1	RefSeq	gene	463268	463930	.	-	.	ID=gene420;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=Y_RS02120;old_locus_tag=y0415
NC_004088.1	Protein Homology	CDS	463268	463930	.	-	0	ID=cds402;Parent=gene420;Dbxref=Genbank:WP_002211502.1;Name=WP_002211502.1;Note=catalyzes the methylation of 16S rRNA at position G966;gbkey=CDS;gene=rsmD;product=16S rRNA methyltransferase;protein_id=WP_002211502.1;transl_table=11
NC_004088.1	RefSeq	gene	464040	464183	.	-	.	ID=gene421;Name=Y_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02125
NC_004088.1	Protein Homology	CDS	464040	464183	.	-	0	ID=cds403;Parent=gene421;Dbxref=Genbank:WP_002215975.1;Name=WP_002215975.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215975.1;transl_table=11
NC_004088.1	RefSeq	gene	464212	465873	.	+	.	ID=gene422;Name=Y_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02130;old_locus_tag=y0416
NC_004088.1	Protein Homology	CDS	464212	465873	.	+	0	ID=cds404;Parent=gene422;Dbxref=Genbank:WP_002224010.1;Name=WP_002224010.1;gbkey=CDS;product=signal recognition particle-docking protein FtsY;protein_id=WP_002224010.1;transl_table=11
NC_004088.1	RefSeq	gene	465879	466547	.	+	.	ID=gene423;Name=Y_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02135;old_locus_tag=y0417
NC_004088.1	Protein Homology	CDS	465879	466547	.	+	0	ID=cds405;Parent=gene423;Dbxref=Genbank:WP_002211504.1;Name=WP_002211504.1;Note=ATP-binding protein of an ATP-binding cassette transporter%3B when bound to FtsX%2C FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions;gbkey=CDS;product=cell division protein FtsE;protein_id=WP_002211504.1;transl_table=11
NC_004088.1	RefSeq	gene	466537	467490	.	+	.	ID=gene424;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=Y_RS02140;old_locus_tag=y0418
NC_004088.1	Protein Homology	CDS	466537	467490	.	+	0	ID=cds406;Parent=gene424;Dbxref=Genbank:WP_002211505.1;Name=WP_002211505.1;Note=ABC transporter%2C membrane protein;gbkey=CDS;gene=ftsX;product=cell division protein FtsX;protein_id=WP_002211505.1;transl_table=11
NC_004088.1	RefSeq	gene	467801	468658	.	+	.	ID=gene425;Name=Y_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02145;old_locus_tag=y0419
NC_004088.1	Protein Homology	CDS	467801	468658	.	+	0	ID=cds407;Parent=gene425;Dbxref=Genbank:WP_002211506.1;Name=WP_002211506.1;Note=binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters;gbkey=CDS;product=RNA polymerase factor sigma-32;protein_id=WP_002211506.1;transl_table=11
NC_004088.1	RefSeq	gene	468712	468882	.	+	.	ID=gene426;Name=Y_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02150
NC_004088.1	Protein Homology	CDS	468712	468882	.	+	0	ID=cds408;Parent=gene426;Dbxref=Genbank:WP_029787950.1;Name=WP_029787950.1;gbkey=CDS;product=transposase;protein_id=WP_029787950.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	468721	469442	.	+	.	ID=id61;gbkey=repeat_region
NC_004088.1	RefSeq	region	468728	469436	.	+	.	ID=id62;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	468872	469330	.	+	.	ID=gene427;Name=Y_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02155;old_locus_tag=y0420
NC_004088.1	Protein Homology	CDS	468872	469330	.	+	0	ID=cds409;Parent=gene427;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	469576	469968	.	-	.	ID=gene428;Name=Y_RS02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02160;old_locus_tag=y0421
NC_004088.1	Protein Homology	CDS	469576	469968	.	-	0	ID=cds410;Parent=gene428;Dbxref=Genbank:WP_002211507.1;Name=WP_002211507.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_002211507.1;transl_table=11
NC_004088.1	RefSeq	gene	470390	471505	.	+	.	ID=gene429;Name=Y_RS02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02165;old_locus_tag=y0422
NC_004088.1	Protein Homology	CDS	470390	471505	.	+	0	ID=cds411;Parent=gene429;Dbxref=Genbank:WP_002211508.1;Name=WP_002211508.1;Note=with LivFGHM is involved in the high affinity leucine transport;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_002211508.1;transl_table=11
NC_004088.1	RefSeq	gene	471686	472612	.	+	.	ID=gene430;Name=Y_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02170;old_locus_tag=y0423
NC_004088.1	Protein Homology	CDS	471686	472612	.	+	0	ID=cds412;Parent=gene430;Dbxref=Genbank:WP_002211509.1;Name=WP_002211509.1;Note=LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter;gbkey=CDS;product=branched-chain amino acid transporter permease subunit LivH;protein_id=WP_002211509.1;transl_table=11
NC_004088.1	RefSeq	gene	472609	473895	.	+	.	ID=gene431;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=Y_RS02175;old_locus_tag=y0424
NC_004088.1	Protein Homology	CDS	472609	473895	.	+	0	ID=cds413;Parent=gene431;Dbxref=Genbank:WP_002211510.1;Name=WP_002211510.1;Note=Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livM;product=leucine/isoleucine/valine transporter permease subunit;protein_id=WP_002211510.1;transl_table=11
NC_004088.1	RefSeq	gene	473892	474659	.	+	.	ID=gene432;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=Y_RS02180;old_locus_tag=y0425
NC_004088.1	Protein Homology	CDS	473892	474659	.	+	0	ID=cds414;Parent=gene432;Dbxref=Genbank:WP_002211511.1;Name=WP_002211511.1;Note=Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livG;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_002211511.1;transl_table=11
NC_004088.1	RefSeq	gene	474704	475405	.	+	.	ID=gene433;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=Y_RS02185;old_locus_tag=y0426
NC_004088.1	Protein Homology	CDS	474704	475405	.	+	0	ID=cds415;Parent=gene433;Dbxref=Genbank:WP_002211512.1;Name=WP_002211512.1;Note=with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livF;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_002211512.1;transl_table=11
NC_004088.1	RefSeq	gene	475633	476094	.	+	.	ID=gene434;Name=Y_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02190;old_locus_tag=y0427
NC_004088.1	Protein Homology	CDS	475633	476094	.	+	0	ID=cds416;Parent=gene434;Dbxref=Genbank:WP_002211513.1;Name=WP_002211513.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211513.1;transl_table=11
NC_004088.1	RefSeq	gene	476209	477315	.	-	.	ID=gene435;Name=Y_RS02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02195;old_locus_tag=y0428
NC_004088.1	Protein Homology	CDS	476209	477315	.	-	0	ID=cds417;Parent=gene435;Dbxref=Genbank:WP_002211514.1;Name=WP_002211514.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211514.1;transl_table=11
NC_004088.1	RefSeq	gene	477393	477911	.	-	.	ID=gene436;Name=Y_RS02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02200;old_locus_tag=y0429
NC_004088.1	Protein Homology	CDS	477393	477911	.	-	0	ID=cds418;Parent=gene436;Dbxref=Genbank:WP_002211515.1;Name=WP_002211515.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211515.1;transl_table=11
NC_004088.1	RefSeq	gene	477973	478620	.	-	.	ID=gene437;Name=Y_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02205;old_locus_tag=y0430
NC_004088.1	Protein Homology	CDS	477973	478620	.	-	0	ID=cds419;Parent=gene437;Dbxref=Genbank:WP_002211516.1;Name=WP_002211516.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211516.1;transl_table=11
NC_004088.1	RefSeq	gene	478592	479278	.	-	.	ID=gene438;Name=Y_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02210;old_locus_tag=y0431
NC_004088.1	Protein Homology	CDS	478592	479278	.	-	0	ID=cds420;Parent=gene438;Dbxref=Genbank:WP_002211517.1;Name=WP_002211517.1;gbkey=CDS;product=pilus assembly protein;protein_id=WP_002211517.1;transl_table=11
NC_004088.1	RefSeq	gene	479296	481629	.	-	.	ID=gene439;Name=Y_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02215;old_locus_tag=y0432
NC_004088.1	Protein Homology	CDS	479296	481629	.	-	0	ID=cds421;Parent=gene439;Dbxref=Genbank:WP_002211518.1;Name=WP_002211518.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211518.1;transl_table=11
NC_004088.1	RefSeq	gene	481896	482387	.	-	.	ID=gene440;Name=Y_RS02220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02220;old_locus_tag=y0433
NC_004088.1	Protein Homology	CDS	481896	482387	.	-	0	ID=cds422;Parent=gene440;Dbxref=Genbank:WP_002228181.1;Name=WP_002228181.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228181.1;transl_table=11
NC_004088.1	RefSeq	gene	482942	484261	.	+	.	ID=gene441;Name=Y_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02225;old_locus_tag=y0434
NC_004088.1	Protein Homology	CDS	482942	484261	.	+	0	ID=cds423;Parent=gene441;Dbxref=Genbank:WP_002211520.1;Name=WP_002211520.1;Note=with UgpACE is involved in the uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol-3-phosphate-binding periplasmic protein UgpB;protein_id=WP_002211520.1;transl_table=11
NC_004088.1	RefSeq	gene	484559	485446	.	+	.	ID=gene442;Name=Y_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02230;old_locus_tag=y0435
NC_004088.1	Protein Homology	CDS	484559	485446	.	+	0	ID=cds424;Parent=gene442;Dbxref=Genbank:WP_002211521.1;Name=WP_002211521.1;Note=with UgpEC is involved in the uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol 3-phosphate ABC transporter permease;protein_id=WP_002211521.1;transl_table=11
NC_004088.1	RefSeq	gene	485443	486288	.	+	.	ID=gene443;Name=Y_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02235;old_locus_tag=y0436
NC_004088.1	Protein Homology	CDS	485443	486288	.	+	0	ID=cds425;Parent=gene443;Dbxref=Genbank:WP_002211522.1;Name=WP_002211522.1;Note=with UgpABC is involved in uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol 3-phosphate ABC transporter permease;protein_id=WP_002211522.1;transl_table=11
NC_004088.1	RefSeq	gene	486295	487368	.	+	.	ID=gene444;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=Y_RS02240;old_locus_tag=y0437
NC_004088.1	Protein Homology	CDS	486295	487368	.	+	0	ID=cds426;Parent=gene444;Dbxref=Genbank:WP_002231937.1;Name=WP_002231937.1;Note=part of the UgpABCE glycerol-3-phosphate uptake system;gbkey=CDS;gene=ugpC;product=glycerol-3-phosphate ABC transporter ATP-binding protein;protein_id=WP_002231937.1;transl_table=11
NC_004088.1	RefSeq	gene	487365	488114	.	+	.	ID=gene445;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=Y_RS02245;old_locus_tag=y0438
NC_004088.1	Protein Homology	CDS	487365	488114	.	+	0	ID=cds427;Parent=gene445;Dbxref=Genbank:WP_002211524.1;Name=WP_002211524.1;Note=hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol%3B induced when cells are starved for inorganic phosphate;gbkey=CDS;gene=ugpQ;product=glycerophosphodiester phosphodiesterase;protein_id=WP_002211524.1;transl_table=11
NC_004088.1	RefSeq	gene	488215	489171	.	+	.	ID=gene446;Name=Y_RS02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02250;old_locus_tag=y0439
NC_004088.1	Protein Homology	CDS	488215	489171	.	+	0	ID=cds428;Parent=gene446;Dbxref=Genbank:WP_002224020.1;Name=WP_002224020.1;gbkey=CDS;product=membrane protein;protein_id=WP_002224020.1;transl_table=11
NC_004088.1	RefSeq	gene	489524	490423	.	+	.	ID=gene447;Name=Y_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02255;old_locus_tag=y0440
NC_004088.1	Protein Homology	CDS	489524	490423	.	+	0	ID=cds429;Parent=gene447;Dbxref=Genbank:WP_002215597.1;Name=WP_002215597.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215597.1;transl_table=11
NC_004088.1	RefSeq	gene	490311	491264	.	-	.	ID=gene448;Name=Y_RS02260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02260;old_locus_tag=y0441
NC_004088.1	Protein Homology	CDS	490311	491264	.	-	0	ID=cds430;Parent=gene448;Dbxref=Genbank:WP_002211525.1;Name=WP_002211525.1;Note=homocysteine-binding%3B positive regulator of metA%2C metE and metH;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002211525.1;transl_table=11
NC_004088.1	RefSeq	gene	491355	493646	.	+	.	ID=gene449;Name=Y_RS02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02265;old_locus_tag=y0442
NC_004088.1	Protein Homology	CDS	491355	493646	.	+	0	ID=cds431;Parent=gene449;Dbxref=Genbank:WP_002220853.1;Name=WP_002220853.1;gbkey=CDS;product=5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase;protein_id=WP_002220853.1;transl_table=11
NC_004088.1	RefSeq	gene	493701	494573	.	-	.	ID=gene450;Name=Y_RS02270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02270;old_locus_tag=y0443
NC_004088.1	Protein Homology	CDS	493701	494573	.	-	0	ID=cds432;Parent=gene450;Dbxref=Genbank:WP_002211527.1;Name=WP_002211527.1;gbkey=CDS;product=carboxymethylenebutenolidase;protein_id=WP_002211527.1;transl_table=11
NC_004088.1	RefSeq	gene	495001	495762	.	+	.	ID=gene451;Name=Y_RS02275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02275;old_locus_tag=y0444
NC_004088.1	Protein Homology	CDS	495001	495762	.	+	0	ID=cds433;Parent=gene451;Dbxref=Genbank:WP_002211528.1;Name=WP_002211528.1;Note=catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate%3B involved in the pyrimidine salvage pathway;gbkey=CDS;product=uridine phosphorylase;protein_id=WP_002211528.1;transl_table=11
NC_004088.1	RefSeq	gene	495883	496713	.	+	.	ID=gene452;Name=Y_RS02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02280;old_locus_tag=y0445
NC_004088.1	Protein Homology	CDS	495883	496713	.	+	0	ID=cds434;Parent=gene452;Dbxref=Genbank:WP_002228183.1;Name=WP_002228183.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_002228183.1;transl_table=11
NC_004088.1	RefSeq	gene	497077	498888	.	+	.	ID=gene453;Name=Y_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02285;old_locus_tag=y0446
NC_004088.1	Protein Homology	CDS	497077	498888	.	+	0	ID=cds435;Parent=gene453;Dbxref=Genbank:WP_002211530.1;Name=WP_002211530.1;gbkey=CDS;product=carbon starvation protein CstA;protein_id=WP_002211530.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	498938	498956	.	+	.	ID=id63;Dbxref=CollecTF:EXPSITE_00000ca0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y0447;gbkey=protein_bind
NC_004088.1	RefSeq	gene	499160	499690	.	+	.	ID=gene454;Name=Y_RS02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02290;old_locus_tag=y0447
NC_004088.1	Protein Homology	CDS	499160	499690	.	+	0	ID=cds436;Parent=gene454;Dbxref=Genbank:WP_002211531.1;Name=WP_002211531.1;gbkey=CDS;product=cytochrome O ubiquinol oxidase;protein_id=WP_002211531.1;transl_table=11
NC_004088.1	RefSeq	gene	499898	501403	.	+	.	ID=gene455;Name=Y_RS02295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02295;old_locus_tag=y0448
NC_004088.1	Protein Homology	CDS	499898	501403	.	+	0	ID=cds437;Parent=gene455;Dbxref=Genbank:WP_002211532.1;Name=WP_002211532.1;Note=YigN%3B nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence%3B transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner;gbkey=CDS;product=DNA recombination protein RmuC;protein_id=WP_002211532.1;transl_table=11
NC_004088.1	RefSeq	gene	501495	502250	.	+	.	ID=gene456;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=Y_RS02300;old_locus_tag=y0449
NC_004088.1	Protein Homology	CDS	501495	502250	.	+	0	ID=cds438;Parent=gene456;Dbxref=Genbank:WP_002224024.1;Name=WP_002224024.1;Note=Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone;gbkey=CDS;gene=ubiE;product=ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE;protein_id=WP_002224024.1;transl_table=11
NC_004088.1	RefSeq	gene	502264	502914	.	+	.	ID=gene457;Name=Y_RS02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02305;old_locus_tag=y0450
NC_004088.1	Protein Homology	CDS	502264	502914	.	+	0	ID=cds439;Parent=gene457;Dbxref=Genbank:WP_002215928.1;Name=WP_002215928.1;gbkey=CDS;product=sterol-binding protein;protein_id=WP_002215928.1;transl_table=11
NC_004088.1	RefSeq	gene	502914	504545	.	+	.	ID=gene458;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;gene_synonym=aarF,yigQ,yigR;locus_tag=Y_RS02310;old_locus_tag=y0451
NC_004088.1	Protein Homology	CDS	502914	504545	.	+	0	ID=cds440;Parent=gene458;Dbxref=Genbank:WP_002211535.1;Name=WP_002211535.1;Note=an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone%3B functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis%3B similar to eukaryotic proteins that exhibit kinase functions;gbkey=CDS;gene=ubiB;product=hypothetical protein;protein_id=WP_002211535.1;transl_table=11
NC_004088.1	RefSeq	gene	504725	504991	.	+	.	ID=gene459;Name=Y_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02315;old_locus_tag=y0452
NC_004088.1	Protein Homology	CDS	504725	504991	.	+	0	ID=cds441;Parent=gene459;Dbxref=Genbank:WP_002211536.1;Name=WP_002211536.1;gbkey=CDS;product=protein translocase TatA;protein_id=WP_002211536.1;transl_table=11
NC_004088.1	RefSeq	gene	504995	505657	.	+	.	ID=gene460;Name=Y_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02320;old_locus_tag=y0453
NC_004088.1	Protein Homology	CDS	504995	505657	.	+	0	ID=cds442;Parent=gene460;Dbxref=Genbank:WP_002211537.1;Name=WP_002211537.1;gbkey=CDS;product=Sec-independent protein translocase TatB;protein_id=WP_002211537.1;transl_table=11
NC_004088.1	RefSeq	gene	505660	506436	.	+	.	ID=gene461;Name=Y_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02325;old_locus_tag=y0454
NC_004088.1	Protein Homology	CDS	505660	506436	.	+	0	ID=cds443;Parent=gene461;Dbxref=Genbank:WP_002211538.1;Name=WP_002211538.1;Note=with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane;gbkey=CDS;product=preprotein translocase subunit TatC;protein_id=WP_002211538.1;transl_table=11
NC_004088.1	RefSeq	gene	506492	507031	.	+	.	ID=gene462;Name=Y_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02330;old_locus_tag=y0455
NC_004088.1	Protein Homology	CDS	506492	507031	.	+	0	ID=cds444;Parent=gene462;Dbxref=Genbank:WP_002211539.1;Name=WP_002211539.1;gbkey=CDS;product=deoxyribonuclease;protein_id=WP_002211539.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	506970	508927	.	+	.	ID=id64;gbkey=repeat_region
NC_004088.1	RefSeq	region	506972	508925	.	+	.	ID=id65;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	507058	508080	.	+	.	ID=gene463;Name=Y_RS02335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02335;old_locus_tag=y0456
NC_004088.1	Protein Homology	CDS	507058	508080	.	+	0	ID=cds445;Parent=gene463;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	508080	508859	.	+	.	ID=gene464;Name=Y_RS02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02340;old_locus_tag=y0457
NC_004088.1	Protein Homology	CDS	508080	508859	.	+	0	ID=cds446;Parent=gene464;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	508898	509233	.	+	.	ID=gene465;Name=Y_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02345;old_locus_tag=y0458
NC_004088.1	Protein Homology	CDS	508898	509233	.	+	0	ID=cds447;Parent=gene465;Dbxref=Genbank:WP_002211540.1;Name=WP_002211540.1;gbkey=CDS;product=deoxyribonuclease;protein_id=WP_002211540.1;transl_table=11
NC_004088.1	RefSeq	gene	509248	510270	.	+	.	ID=gene466;Name=Y_RS02350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02350;old_locus_tag=y0459
NC_004088.1	Protein Homology	CDS	509248	510270	.	+	0	ID=cds448;Parent=gene466;Dbxref=Genbank:WP_002211541.1;Name=WP_002211541.1;Note=catalyzes the formation of porphobilinogen from 5-aminolevulinate;gbkey=CDS;product=delta-aminolevulinic acid dehydratase;protein_id=WP_002211541.1;transl_table=11
NC_004088.1	RefSeq	gene	510380	510868	.	-	.	ID=gene467;Name=rfaH;gbkey=Gene;gene=rfaH;gene_biotype=protein_coding;locus_tag=Y_RS02355;old_locus_tag=y0460
NC_004088.1	Protein Homology	CDS	510380	510868	.	-	0	ID=cds449;Parent=gene467;Dbxref=Genbank:WP_002211542.1;Name=WP_002211542.1;gbkey=CDS;gene=rfaH;product=transcriptional regulator;protein_id=WP_002211542.1;transl_table=11
NC_004088.1	RefSeq	gene	511116	512612	.	+	.	ID=gene468;Name=Y_RS02360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02360;old_locus_tag=y0461
NC_004088.1	Protein Homology	CDS	511116	512612	.	+	0	ID=cds450;Parent=gene468;Dbxref=Genbank:WP_002215917.1;Name=WP_002215917.1;Note=catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol;gbkey=CDS;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=WP_002215917.1;transl_table=11
NC_004088.1	RefSeq	gene	512667	513368	.	+	.	ID=gene469;Name=fre;gbkey=Gene;gene=fre;gene_biotype=protein_coding;gene_synonym=fadI;locus_tag=Y_RS02365;old_locus_tag=y0462
NC_004088.1	Protein Homology	CDS	512667	513368	.	+	0	ID=cds451;Parent=gene469;Dbxref=Genbank:WP_002215918.1;Name=WP_002215918.1;Note=NAD(P)H-flavin reductase%3B catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide%3B in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin;gbkey=CDS;gene=fre;product=FMN reductase;protein_id=WP_002215918.1;transl_table=11
NC_004088.1	RefSeq	gene	513528	514691	.	-	.	ID=gene470;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;locus_tag=Y_RS02370;old_locus_tag=y0463
NC_004088.1	Protein Homology	CDS	513528	514691	.	-	0	ID=cds452;Parent=gene470;Dbxref=Genbank:WP_002211545.1;Name=WP_002211545.1;Note=FadA%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadB%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids;gbkey=CDS;gene=fadA;product=3-ketoacyl-CoA thiolase;protein_id=WP_002211545.1;transl_table=11
NC_004088.1	RefSeq	gene	514703	516892	.	-	.	ID=gene471;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;locus_tag=Y_RS02375;old_locus_tag=y0464
NC_004088.1	Protein Homology	CDS	514703	516892	.	-	0	ID=cds453;Parent=gene471;Dbxref=Genbank:WP_002211546.1;Name=WP_002211546.1;Note=includes enoyl-CoA hydratase%2C delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase%2C 3-hydroxyacyl-CoA dehydrogenase%2C and 3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities%3B forms a heterotetramer with FadA%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids;gbkey=CDS;gene=fadB;product=fatty acid oxidation complex subunit alpha;protein_id=WP_002211546.1;transl_table=11
NC_004088.1	RefSeq	gene	517219	518550	.	+	.	ID=gene472;Name=Y_RS02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02380;old_locus_tag=y0465
NC_004088.1	Protein Homology	CDS	517219	518550	.	+	0	ID=cds454;Parent=gene472;Dbxref=Genbank:WP_002211547.1;Name=WP_002211547.1;Note=catalyzes the hydrolysis of dipeptides with a proline at the C-terminal%3B also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters;gbkey=CDS;product=Xaa-Pro dipeptidase;protein_id=WP_002211547.1;transl_table=11
NC_004088.1	RefSeq	gene	518550	518759	.	+	.	ID=gene473;Name=Y_RS02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02385
NC_004088.1	Protein Homology	CDS	518550	518759	.	+	0	ID=cds455;Parent=gene473;Dbxref=Genbank:WP_002211548.1;Name=WP_002211548.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211548.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	518712	519433	.	+	.	ID=id66;gbkey=repeat_region
NC_004088.1	RefSeq	region	518719	519428	.	+	.	ID=id67;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	518864	519322	.	+	.	ID=gene474;Name=Y_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02390;old_locus_tag=y0466
NC_004088.1	Protein Homology	CDS	518864	519322	.	+	0	ID=cds456;Parent=gene474;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	519395	519871	.	+	.	ID=gene475;Name=Y_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02395;old_locus_tag=y0467
NC_004088.1	Protein Homology	CDS	519395	519871	.	+	0	ID=cds457;Parent=gene475;Dbxref=Genbank:WP_002211549.1;Name=WP_002211549.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211549.1;transl_table=11
NC_004088.1	RefSeq	gene	519911	521362	.	+	.	ID=gene476;Name=Y_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02400;old_locus_tag=y0468
NC_004088.1	Protein Homology	CDS	519911	521362	.	+	0	ID=cds458;Parent=gene476;Dbxref=Genbank:WP_002211550.1;Name=WP_002211550.1;gbkey=CDS;product=potassium transporter;protein_id=WP_002211550.1;transl_table=11
NC_004088.1	RefSeq	gene	521384	521917	.	+	.	ID=gene477;Name=Y_RS02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02405;old_locus_tag=y0469
NC_004088.1	Protein Homology	CDS	521384	521917	.	+	0	ID=cds459;Parent=gene477;Dbxref=Genbank:WP_002215920.1;Name=WP_002215920.1;gbkey=CDS;product=protoporphyrinogen oxidase;protein_id=WP_002215920.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	521943	527666	.	+	.	ID=id68;gbkey=repeat_region
NC_004088.1	RefSeq	gene	522389	523937	.	+	.	ID=gene478;Name=Y_RS02415;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS02415;old_locus_tag=yr008
NC_004088.1	RefSeq	rRNA	522389	523937	.	+	.	ID=rna18;Parent=gene478;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	exon	522389	523937	.	+	.	ID=id69;Parent=rna18;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	gene	524037	524113	.	+	.	ID=gene479;Name=Y_RS02420;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS02420;old_locus_tag=yt010
NC_004088.1	tRNAscan-SE	tRNA	524037	524113	.	+	.	ID=rna19;Parent=gene479;anticodon=(pos:524071..524073);gbkey=tRNA;product=tRNA-Ile
NC_004088.1	tRNAscan-SE	exon	524037	524113	.	+	.	ID=id70;Parent=rna19;anticodon=(pos:524071..524073);gbkey=tRNA;product=tRNA-Ile
NC_004088.1	RefSeq	gene	524165	524240	.	+	.	ID=gene480;Name=Y_RS02425;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS02425;old_locus_tag=yt011
NC_004088.1	tRNAscan-SE	tRNA	524165	524240	.	+	.	ID=rna20;Parent=gene480;anticodon=(pos:524198..524200);gbkey=tRNA;product=tRNA-Ala
NC_004088.1	tRNAscan-SE	exon	524165	524240	.	+	.	ID=id71;Parent=rna20;anticodon=(pos:524198..524200);gbkey=tRNA;product=tRNA-Ala
NC_004088.1	RefSeq	gene	524450	527383	.	+	.	ID=gene481;Name=Y_RS02430;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS02430;old_locus_tag=yr009
NC_004088.1	RefSeq	rRNA	524450	527383	.	+	.	ID=rna21;Parent=gene481;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	exon	524450	527383	.	+	.	ID=id72;Parent=rna21;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	gene	527475	527590	.	+	.	ID=gene482;Name=Y_RS02435;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS02435;old_locus_tag=yr010
NC_004088.1	cmsearch	rRNA	527475	527590	.	+	.	ID=rna22;Parent=gene482;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	cmsearch	exon	527475	527590	.	+	.	ID=id73;Parent=rna22;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	RefSeq	gene	528054	529091	.	+	.	ID=gene483;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=Y_RS02440;old_locus_tag=y0471
NC_004088.1	Protein Homology	CDS	528054	529091	.	+	0	ID=cds460;Parent=gene483;Dbxref=Genbank:WP_002212288.1;Name=WP_002212288.1;Note=catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis;gbkey=CDS;gene=murB;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=WP_002212288.1;transl_table=11
NC_004088.1	RefSeq	gene	529088	530047	.	+	.	ID=gene484;Name=Y_RS02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02445;old_locus_tag=y0472
NC_004088.1	Protein Homology	CDS	529088	530047	.	+	0	ID=cds461;Parent=gene484;Dbxref=Genbank:WP_002212289.1;Name=WP_002212289.1;Note=catalyzes the formation of biotinyl-5'-AMP%2C also acts as a transcriptional repressor of the biotin operon;gbkey=CDS;product=bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor;protein_id=WP_002212289.1;transl_table=11
NC_004088.1	RefSeq	gene	530082	531032	.	-	.	ID=gene485;Name=Y_RS02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02450;old_locus_tag=y0473
NC_004088.1	Protein Homology	CDS	530082	531032	.	-	0	ID=cds462;Parent=gene485;Dbxref=Genbank:WP_002212290.1;Name=WP_002212290.1;gbkey=CDS;product=pantothenate kinase;protein_id=WP_002212290.1;transl_table=11
NC_004088.1	RefSeq	gene	531243	531794	.	-	.	ID=gene486;Name=Y_RS02455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02455;old_locus_tag=y0474
NC_004088.1	Protein Homology	CDS	531243	531794	.	-	0	ID=cds463;Parent=gene486;Dbxref=Genbank:WP_002217850.1;Name=WP_002217850.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_002217850.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	531796	533755	.	+	.	ID=id74;gbkey=repeat_region
NC_004088.1	RefSeq	region	531798	533751	.	+	.	ID=id75;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	531884	532906	.	+	.	ID=gene487;Name=Y_RS02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02460;old_locus_tag=y0475
NC_004088.1	Protein Homology	CDS	531884	532906	.	+	0	ID=cds464;Parent=gene487;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	532906	533685	.	+	.	ID=gene488;Name=Y_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02465;old_locus_tag=y0476
NC_004088.1	Protein Homology	CDS	532906	533685	.	+	0	ID=cds465;Parent=gene488;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	534149	534224	.	+	.	ID=gene489;Name=Y_RS02470;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS02470;old_locus_tag=yt012
NC_004088.1	tRNAscan-SE	tRNA	534149	534224	.	+	.	ID=rna23;Parent=gene489;anticodon=(pos:534182..534184);gbkey=tRNA;product=tRNA-Thr
NC_004088.1	tRNAscan-SE	exon	534149	534224	.	+	.	ID=id76;Parent=rna23;anticodon=(pos:534182..534184);gbkey=tRNA;product=tRNA-Thr
NC_004088.1	RefSeq	gene	534243	534327	.	+	.	ID=gene490;Name=Y_RS02475;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS02475;old_locus_tag=yt013
NC_004088.1	tRNAscan-SE	tRNA	534243	534327	.	+	.	ID=rna24;Parent=gene490;anticodon=(pos:534277..534279);gbkey=tRNA;product=tRNA-Tyr
NC_004088.1	tRNAscan-SE	exon	534243	534327	.	+	.	ID=id77;Parent=rna24;anticodon=(pos:534277..534279);gbkey=tRNA;product=tRNA-Tyr
NC_004088.1	RefSeq	gene	534477	534551	.	+	.	ID=gene491;Name=Y_RS02480;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS02480;old_locus_tag=yt014
NC_004088.1	tRNAscan-SE	tRNA	534477	534551	.	+	.	ID=rna25;Parent=gene491;anticodon=(pos:534510..534512);gbkey=tRNA;product=tRNA-Gly
NC_004088.1	tRNAscan-SE	exon	534477	534551	.	+	.	ID=id78;Parent=rna25;anticodon=(pos:534510..534512);gbkey=tRNA;product=tRNA-Gly
NC_004088.1	RefSeq	gene	534558	534633	.	+	.	ID=gene492;Name=Y_RS02485;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS02485;old_locus_tag=yt015
NC_004088.1	tRNAscan-SE	tRNA	534558	534633	.	+	.	ID=rna26;Parent=gene492;anticodon=(pos:534591..534593);gbkey=tRNA;product=tRNA-Thr
NC_004088.1	tRNAscan-SE	exon	534558	534633	.	+	.	ID=id79;Parent=rna26;anticodon=(pos:534591..534593);gbkey=tRNA;product=tRNA-Thr
NC_004088.1	RefSeq	gene	534742	535926	.	+	.	ID=gene493;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=Y_RS02490;old_locus_tag=y0477
NC_004088.1	Protein Homology	CDS	534742	535926	.	+	0	ID=cds466;Parent=gene493;Dbxref=Genbank:WP_002210669.1;Name=WP_002210669.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=elongation factor Tu;protein_id=WP_002210669.1;transl_table=11
NC_004088.1	RefSeq	gene	536177	536560	.	+	.	ID=gene494;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=Y_RS02495;old_locus_tag=y0478
NC_004088.1	Protein Homology	CDS	536177	536560	.	+	0	ID=cds467;Parent=gene494;Dbxref=Genbank:WP_002210670.1;Name=WP_002210670.1;Note=forms a complex with SecY and SecG%3B SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane%2C a process driven by ATP and a proton-motive force;gbkey=CDS;gene=secE;product=preprotein translocase subunit SecE;protein_id=WP_002210670.1;transl_table=11
NC_004088.1	RefSeq	gene	536562	537107	.	+	.	ID=gene495;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=Y_RS02500;old_locus_tag=y0479
NC_004088.1	Protein Homology	CDS	536562	537107	.	+	0	ID=cds468;Parent=gene495;Dbxref=Genbank:WP_002210671.1;Name=WP_002210671.1;Note=Modulates Rho-dependent transcription termination;gbkey=CDS;gene=nusG;product=transcription termination/antitermination protein NusG;protein_id=WP_002210671.1;transl_table=11
NC_004088.1	RefSeq	gene	537298	537726	.	+	.	ID=gene496;Name=Y_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02505;old_locus_tag=y0480
NC_004088.1	Protein Homology	CDS	537298	537726	.	+	0	ID=cds469;Parent=gene496;Dbxref=Genbank:WP_002210672.1;Name=WP_002210672.1;gbkey=CDS;product=50S ribosomal protein L11;protein_id=WP_002210672.1;transl_table=11
NC_004088.1	RefSeq	gene	537730	538434	.	+	.	ID=gene497;Name=Y_RS02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02510;old_locus_tag=y0481
NC_004088.1	Protein Homology	CDS	537730	538434	.	+	0	ID=cds470;Parent=gene497;Dbxref=Genbank:WP_002210673.1;Name=WP_002210673.1;gbkey=CDS;product=50S ribosomal protein L1;protein_id=WP_002210673.1;transl_table=11
NC_004088.1	RefSeq	gene	538799	539296	.	+	.	ID=gene498;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=Y_RS02515;old_locus_tag=y0482
NC_004088.1	Protein Homology	CDS	538799	539296	.	+	0	ID=cds471;Parent=gene498;Dbxref=Genbank:WP_002210674.1;Name=WP_002210674.1;Note=binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit;gbkey=CDS;gene=rplJ;product=50S ribosomal protein L10;protein_id=WP_002210674.1;transl_table=11
NC_004088.1	RefSeq	gene	539363	539731	.	+	.	ID=gene499;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=Y_RS02520;old_locus_tag=y0483
NC_004088.1	Protein Homology	CDS	539363	539731	.	+	0	ID=cds472;Parent=gene499;Dbxref=Genbank:WP_002210675.1;Name=WP_002210675.1;Note=present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors;gbkey=CDS;gene=rplL;product=50S ribosomal protein L7/L12;protein_id=WP_002210675.1;transl_table=11
NC_004088.1	RefSeq	gene	540074	544102	.	+	.	ID=gene500;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=Y_RS02525;old_locus_tag=y0484
NC_004088.1	Protein Homology	CDS	540074	544102	.	+	0	ID=cds473;Parent=gene500;Dbxref=Genbank:WP_002210676.1;Name=WP_002210676.1;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme;gbkey=CDS;gene=rpoB;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_002210676.1;transl_table=11
NC_004088.1	RefSeq	gene	544231	548451	.	+	.	ID=gene501;Name=Y_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02530;old_locus_tag=y0485
NC_004088.1	Protein Homology	CDS	544231	548451	.	+	0	ID=cds474;Parent=gene501;Dbxref=Genbank:WP_002210677.1;Name=WP_002210677.1;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter;gbkey=CDS;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_002210677.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	548467	549186	.	+	.	ID=id80;gbkey=repeat_region
NC_004088.1	RefSeq	region	548472	549181	.	-	.	ID=id81;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	548578	549036	.	-	.	ID=gene502;Name=Y_RS02535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02535;old_locus_tag=y0486
NC_004088.1	Protein Homology	CDS	548578	549036	.	-	0	ID=cds475;Parent=gene502;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	549026	549193	.	-	.	ID=gene503;Name=Y_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02540
NC_004088.1	Protein Homology	CDS	549026	549193	.	-	0	ID=cds476;Parent=gene503;Dbxref=Genbank:WP_002217271.1;Name=WP_002217271.1;gbkey=CDS;product=invasin;protein_id=WP_002217271.1;transl_table=11
NC_004088.1	RefSeq	gene	549312	549425	.	+	.	ID=gene504;Name=Y_RS02545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02545
NC_004088.1	Protein Homology	CDS	549312	549425	.	+	0	ID=cds477;Parent=gene504;Dbxref=Genbank:WP_002224232.1;Name=WP_002224232.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224232.1;transl_table=11
NC_004088.1	RefSeq	gene	549468	550598	.	-	.	ID=gene505;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=Y_RS02550;old_locus_tag=y0487
NC_004088.1	Protein Homology	CDS	549468	550598	.	-	0	ID=cds478;Parent=gene505;Dbxref=Genbank:WP_002210678.1;Name=WP_002210678.1;Note=in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS%3B with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine%2C cysteine and 1-deoxy-D-xylulose-5-phosphate%3B forms a complex with ThiG%3B contains an iron-sulfur center;gbkey=CDS;gene=thiH;product=thiamine biosynthesis protein ThiH;protein_id=WP_002210678.1;transl_table=11
NC_004088.1	RefSeq	gene	550591	551406	.	-	.	ID=gene506;Name=Y_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02555;old_locus_tag=y0488
NC_004088.1	Protein Homology	CDS	550591	551406	.	-	0	ID=cds479;Parent=gene506;Dbxref=Genbank:WP_002228257.1;Name=WP_002228257.1;gbkey=CDS;product=thiazole synthase;protein_id=WP_002228257.1;transl_table=11
NC_004088.1	RefSeq	gene	551408	551623	.	-	.	ID=gene507;Name=Y_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02560
NC_004088.1	Protein Homology	CDS	551408	551623	.	-	0	ID=cds480;Parent=gene507;Dbxref=Genbank:WP_002217275.1;Name=WP_002217275.1;gbkey=CDS;product=thiamine biosynthesis protein ThiS;protein_id=WP_002217275.1;transl_table=11
NC_004088.1	RefSeq	gene	551620	552417	.	-	.	ID=gene508;Name=Y_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02565;old_locus_tag=y0489
NC_004088.1	Protein Homology	CDS	551620	552417	.	-	0	ID=cds481;Parent=gene508;Dbxref=Genbank:WP_002210680.1;Name=WP_002210680.1;gbkey=CDS;product=molybdopterin biosynthesis protein MoeB;protein_id=WP_002210680.1;transl_table=11
NC_004088.1	RefSeq	gene	552407	553081	.	-	.	ID=gene509;Name=Y_RS02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02570;old_locus_tag=y0490
NC_004088.1	Protein Homology	CDS	552407	553081	.	-	0	ID=cds482;Parent=gene509;Dbxref=Genbank:WP_002210681.1;Name=WP_002210681.1;Note=catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate;gbkey=CDS;product=thiamine-phosphate pyrophosphorylase;protein_id=WP_002210681.1;transl_table=11
NC_004088.1	RefSeq	gene	553068	555113	.	-	.	ID=gene510;Name=Y_RS02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02575;old_locus_tag=y0491
NC_004088.1	Protein Homology	CDS	553068	555113	.	-	0	ID=cds483;Parent=gene510;Dbxref=Genbank:WP_002210682.1;Name=WP_002210682.1;Note=catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis;gbkey=CDS;product=phosphomethylpyrimidine synthase;protein_id=WP_002210682.1;transl_table=11
NC_004088.1	RefSeq	gene	555106	555366	.	-	.	ID=gene511;Name=Y_RS02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02580
NC_004088.1	Protein Homology	CDS	555106	555366	.	-	0	ID=cds484;Parent=gene511;Dbxref=Genbank:WP_002228187.1;Name=WP_002228187.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228187.1;transl_table=11
NC_004088.1	RefSeq	gene	555489	555998	.	-	.	ID=gene512;Name=Y_RS02585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02585;old_locus_tag=y0492
NC_004088.1	Protein Homology	CDS	555489	555998	.	-	0	ID=cds485;Parent=gene512;Dbxref=Genbank:WP_002210683.1;Name=WP_002210683.1;gbkey=CDS;product=regulator of sigma D;protein_id=WP_002210683.1;transl_table=11
NC_004088.1	RefSeq	gene	556095	556877	.	+	.	ID=gene513;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=Y_RS02590;old_locus_tag=y0493
NC_004088.1	Protein Homology	CDS	556095	556877	.	+	0	ID=cds486;Parent=gene513;Dbxref=Genbank:WP_002210684.1;Name=WP_002210684.1;Note=can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH%3B requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates;gbkey=CDS;gene=nudC;product=NADH pyrophosphatase;protein_id=WP_002210684.1;transl_table=11
NC_004088.1	RefSeq	gene	557012	557755	.	+	.	ID=gene514;Name=Y_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02595;old_locus_tag=y0495
NC_004088.1	Protein Homology	CDS	557012	557755	.	+	0	ID=cds487;Parent=gene514;Dbxref=Genbank:WP_002355297.1;Name=WP_002355297.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002355297.1;transl_table=11
NC_004088.1	RefSeq	gene	557874	558941	.	+	.	ID=gene515;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=Y_RS02600;old_locus_tag=y0496
NC_004088.1	Protein Homology	CDS	557874	558941	.	+	0	ID=cds488;Parent=gene515;Dbxref=Genbank:WP_002210686.1;Name=WP_002210686.1;Note=catalyzes the formation of coproporphyrinogen from uroporphyrinogen III;gbkey=CDS;gene=hemE;product=uroporphyrinogen decarboxylase;protein_id=WP_002210686.1;transl_table=11
NC_004088.1	RefSeq	gene	559007	559711	.	+	.	ID=gene516;Name=Y_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02605;old_locus_tag=y0497
NC_004088.1	Protein Homology	CDS	559007	559711	.	+	0	ID=cds489;Parent=gene516;Dbxref=Genbank:WP_002217884.1;Name=WP_002217884.1;Note=Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA%3B cleaves DNA containing urea residues%2C AP sites%2C base mismatches%2C insertion/deletion mismatches%2C flaps%2C and pseudo-Y structures;gbkey=CDS;product=endonuclease V;protein_id=WP_002217884.1;transl_table=11
NC_004088.1	RefSeq	gene	559757	560347	.	+	.	ID=gene517;Name=Y_RS02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02610;old_locus_tag=y0498
NC_004088.1	Protein Homology	CDS	559757	560347	.	+	0	ID=cds490;Parent=gene517;Dbxref=Genbank:WP_002210688.1;Name=WP_002210688.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210688.1;transl_table=11
NC_004088.1	RefSeq	gene	560536	560811	.	+	.	ID=gene518;Name=Y_RS02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02615;old_locus_tag=y0499
NC_004088.1	Protein Homology	CDS	560536	560811	.	+	0	ID=cds491;Parent=gene518;Dbxref=Genbank:WP_002210689.1;Name=WP_002210689.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210689.1;transl_table=11
NC_004088.1	RefSeq	gene	560861	561514	.	+	.	ID=gene519;Name=Y_RS02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02620;old_locus_tag=y0500
NC_004088.1	Protein Homology	CDS	560861	561514	.	+	0	ID=cds492;Parent=gene519;Dbxref=Genbank:WP_002355296.1;Name=WP_002355296.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002355296.1;transl_table=11
NC_004088.1	RefSeq	gene	561662	562948	.	-	.	ID=gene520;Name=Y_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02625;old_locus_tag=y0501
NC_004088.1	Protein Homology	CDS	561662	562948	.	-	0	ID=cds493;Parent=gene520;Dbxref=Genbank:WP_002210691.1;Name=WP_002210691.1;Note=catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis;gbkey=CDS;product=phosphoribosylamine--glycine ligase;protein_id=WP_002210691.1;transl_table=11
NC_004088.1	RefSeq	gene	563008	564597	.	-	.	ID=gene521;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=Y_RS02630;old_locus_tag=y0502
NC_004088.1	Protein Homology	CDS	563008	564597	.	-	0	ID=cds494;Parent=gene521;Dbxref=Genbank:WP_002210692.1;Name=WP_002210692.1;Note=involved in de novo purine biosynthesis;gbkey=CDS;gene=purH;product=bifunctional purine biosynthesis protein PurH;protein_id=WP_002210692.1;transl_table=11
NC_004088.1	RefSeq	gene	564755	564985	.	+	.	ID=gene522;Name=Y_RS21755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21755
NC_004088.1	Protein Homology	CDS	564755	564985	.	+	0	ID=cds495;Parent=gene522;Dbxref=Genbank:WP_046155092.1;Name=WP_046155092.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_046155092.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	564887	570778	.	+	.	ID=id82;gbkey=repeat_region
NC_004088.1	RefSeq	gene	565253	566801	.	+	.	ID=gene523;Name=Y_RS02640;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS02640;old_locus_tag=yr011
NC_004088.1	RefSeq	rRNA	565253	566801	.	+	.	ID=rna27;Parent=gene523;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	exon	565253	566801	.	+	.	ID=id83;Parent=rna27;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	gene	566935	567010	.	+	.	ID=gene524;Name=Y_RS02645;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS02645;old_locus_tag=yt016
NC_004088.1	tRNAscan-SE	tRNA	566935	567010	.	+	.	ID=rna28;Parent=gene524;anticodon=(pos:566969..566971);gbkey=tRNA;product=tRNA-Glu
NC_004088.1	tRNAscan-SE	exon	566935	567010	.	+	.	ID=id84;Parent=rna28;anticodon=(pos:566969..566971);gbkey=tRNA;product=tRNA-Glu
NC_004088.1	RefSeq	gene	567254	570187	.	+	.	ID=gene525;Name=Y_RS02650;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS02650;old_locus_tag=yr012
NC_004088.1	RefSeq	rRNA	567254	570187	.	+	.	ID=rna29;Parent=gene525;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	exon	567254	570187	.	+	.	ID=id85;Parent=rna29;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	gene	570279	570394	.	+	.	ID=gene526;Name=Y_RS02655;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS02655;old_locus_tag=yr013
NC_004088.1	cmsearch	rRNA	570279	570394	.	+	.	ID=rna30;Parent=gene526;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	cmsearch	exon	570279	570394	.	+	.	ID=id86;Parent=rna30;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	RefSeq	gene	570416	570613	.	+	.	ID=gene527;Name=Y_RS21760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21760
NC_004088.1	Protein Homology	CDS	570416	570613	.	+	0	ID=cds496;Parent=gene527;Dbxref=Genbank:WP_046155091.1;Name=WP_046155091.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_046155091.1;transl_table=11
NC_004088.1	RefSeq	gene	570861	571127	.	+	.	ID=gene528;Name=Y_RS02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02660;old_locus_tag=y0503
NC_004088.1	Protein Homology	CDS	570861	571127	.	+	0	ID=cds497;Parent=gene528;Dbxref=Genbank:WP_002213260.1;Name=WP_002213260.1;gbkey=CDS;product=transposase;protein_id=WP_002213260.1;transl_table=11
NC_004088.1	RefSeq	gene	571133	571960	.	+	.	ID=gene529;Name=Y_RS02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02665;old_locus_tag=y0504
NC_004088.1	Protein Homology	CDS	571133	571960	.	+	0	ID=cds498;Parent=gene529;Dbxref=Genbank:WP_032485896.1;Name=WP_032485896.1;gbkey=CDS;product=transposase;protein_id=WP_032485896.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	572557	574513	.	+	.	ID=id87;gbkey=repeat_region
NC_004088.1	RefSeq	region	572559	574512	.	-	.	ID=id88;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	572625	573404	.	-	.	ID=gene530;Name=Y_RS02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02670;old_locus_tag=y0505
NC_004088.1	Protein Homology	CDS	572625	573404	.	-	0	ID=cds499;Parent=gene530;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	573404	574426	.	-	.	ID=gene531;Name=Y_RS02675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02675;old_locus_tag=y0506
NC_004088.1	Protein Homology	CDS	573404	574426	.	-	0	ID=cds500;Parent=gene531;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	574485	575471	.	+	.	ID=gene532;Name=Y_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02680;old_locus_tag=y0507
NC_004088.1	Protein Homology	CDS	574485	575471	.	+	0	ID=cds501;Parent=gene532;Dbxref=Genbank:WP_002209028.1;Name=WP_002209028.1;gbkey=CDS;product=hydrolase;protein_id=WP_002209028.1;transl_table=11
NC_004088.1	RefSeq	gene	575545	577200	.	-	.	ID=gene533;Name=actP;gbkey=Gene;gene=actP;gene_biotype=protein_coding;locus_tag=Y_RS02685;old_locus_tag=y0508
NC_004088.1	Protein Homology	CDS	575545	577200	.	-	0	ID=cds502;Parent=gene533;Dbxref=Genbank:WP_002209029.1;Name=WP_002209029.1;Note=member of the sodium:solute symporter family%3B cotranscribed with the acs gene which encodes acetyl coenzyme A synthase%3B mutations affect acetate uptake;gbkey=CDS;gene=actP;product=cation/acetate symporter ActP;protein_id=WP_002209029.1;transl_table=11
NC_004088.1	RefSeq	gene	577197	577508	.	-	.	ID=gene534;Name=Y_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02690;old_locus_tag=y0509
NC_004088.1	Protein Homology	CDS	577197	577508	.	-	0	ID=cds503;Parent=gene534;Dbxref=Genbank:WP_002209030.1;Name=WP_002209030.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209030.1;transl_table=11
NC_004088.1	RefSeq	gene	577565	579523	.	-	.	ID=gene535;Name=Y_RS02695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02695;old_locus_tag=y0510
NC_004088.1	Protein Homology	CDS	577565	579523	.	-	0	ID=cds504;Parent=gene535;Dbxref=Genbank:WP_002231957.1;Name=WP_002231957.1;Note=Acs%3B catalyzes the conversion of acetate and CoA to acetyl-CoA;gbkey=CDS;product=acetyl-CoA synthetase;protein_id=WP_002231957.1;transl_table=11
NC_004088.1	RefSeq	gene	580378	581694	.	+	.	ID=gene536;Name=Y_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02700;old_locus_tag=y0511
NC_004088.1	Protein Homology	CDS	580378	581694	.	+	0	ID=cds505;Parent=gene536;Dbxref=Genbank:WP_002209033.1;Name=WP_002209033.1;gbkey=CDS;product=proton glutamate symport protein;protein_id=WP_002209033.1;transl_table=11
NC_004088.1	RefSeq	gene	581872	582504	.	-	.	ID=gene537;Name=Y_RS02705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02705;old_locus_tag=y0512
NC_004088.1	Protein Homology	CDS	581872	582504	.	-	0	ID=cds506;Parent=gene537;Dbxref=Genbank:WP_002209034.1;Name=WP_002209034.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209034.1;transl_table=11
NC_004088.1	RefSeq	gene	582517	585336	.	-	.	ID=gene538;Name=Y_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02710;old_locus_tag=y0513
NC_004088.1	Protein Homology	CDS	582517	585336	.	-	0	ID=cds507;Parent=gene538;Dbxref=Genbank:WP_002209035.1;Name=WP_002209035.1;Note=phosphorylates the response regulator SsrB%3B is involved in the expression of the virulence genes of Salmonella pathogenicity island-2;gbkey=CDS;product=two-component system sensor histidine kinase/response regulator;protein_id=WP_002209035.1;transl_table=11
NC_004088.1	RefSeq	gene	585580	587079	.	+	.	ID=gene539;Name=Y_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02715;old_locus_tag=y0514
NC_004088.1	Protein Homology	CDS	585580	587079	.	+	0	ID=cds508;Parent=gene539;Dbxref=Genbank:WP_002353603.1;Name=WP_002353603.1;gbkey=CDS;product=type II secretory pathway protein;protein_id=WP_002353603.1;transl_table=11
NC_004088.1	RefSeq	gene	587081	588292	.	+	.	ID=gene540;Name=Y_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02720;old_locus_tag=y0515
NC_004088.1	Protein Homology	CDS	587081	588292	.	+	0	ID=cds509;Parent=gene540;Dbxref=Genbank:WP_002223958.1;Name=WP_002223958.1;gbkey=CDS;product=type III secretion protein SsaD;protein_id=WP_002223958.1;transl_table=11
NC_004088.1	RefSeq	gene	588311	588532	.	+	.	ID=gene541;Name=Y_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02725;old_locus_tag=y0516
NC_004088.1	Protein Homology	CDS	588311	588532	.	+	0	ID=cds510;Parent=gene541;Dbxref=Genbank:WP_002209038.1;Name=WP_002209038.1;gbkey=CDS;product=type III secretion system protein%2C YseE family;protein_id=WP_002209038.1;transl_table=11
NC_004088.1	RefSeq	gene	588706	589326	.	+	.	ID=gene542;Name=Y_RS02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02730;old_locus_tag=y0517
NC_004088.1	Protein Homology	CDS	588706	589326	.	+	0	ID=cds511;Parent=gene542;Dbxref=Genbank:WP_002216326.1;Name=WP_002216326.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002216326.1;transl_table=11
NC_004088.1	RefSeq	gene	589336	589551	.	+	.	ID=gene543;Name=Y_RS02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02735;old_locus_tag=y0518
NC_004088.1	Protein Homology	CDS	589336	589551	.	+	0	ID=cds512;Parent=gene543;Dbxref=Genbank:WP_002216328.1;Name=WP_002216328.1;gbkey=CDS;product=type III secretion protein;protein_id=WP_002216328.1;transl_table=11
NC_004088.1	RefSeq	gene	589548	589796	.	+	.	ID=gene544;Name=Y_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02740;old_locus_tag=y0519
NC_004088.1	Protein Homology	CDS	589548	589796	.	+	0	ID=cds513;Parent=gene544;Dbxref=Genbank:WP_002209040.1;Name=WP_002209040.1;gbkey=CDS;product=type III secretion system protein%2C SsaH family;protein_id=WP_002209040.1;transl_table=11
NC_004088.1	RefSeq	gene	589894	590145	.	+	.	ID=gene545;Name=Y_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02745
NC_004088.1	Protein Homology	CDS	589894	590145	.	+	0	ID=cds514;Parent=gene545;Dbxref=Genbank:WP_002209041.1;Name=WP_002209041.1;gbkey=CDS;product=type III secretion apparatus protein%2C YscI/HrpB;protein_id=WP_002209041.1;transl_table=11
NC_004088.1	RefSeq	gene	590142	590874	.	+	.	ID=gene546;Name=Y_RS02750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS02750;pseudo=true
NC_004088.1	Protein Homology	CDS	590142	590874	.	+	0	ID=cds515;Parent=gene546;exception=annotated by transcript or proteomic data;gbkey=CDS;product=type III secretion protein SsaJ;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	591049	591642	.	+	.	ID=gene547;Name=Y_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02755;old_locus_tag=y0523
NC_004088.1	Protein Homology	CDS	591049	591642	.	+	0	ID=cds516;Parent=gene547;Dbxref=Genbank:WP_002209043.1;Name=WP_002209043.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209043.1;transl_table=11
NC_004088.1	RefSeq	gene	591639	592286	.	+	.	ID=gene548;Name=Y_RS02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02760;old_locus_tag=y0524
NC_004088.1	Protein Homology	CDS	591639	592286	.	+	0	ID=cds517;Parent=gene548;Dbxref=Genbank:WP_002216333.1;Name=WP_002216333.1;gbkey=CDS;product=type III secretion protein HrpE;protein_id=WP_002216333.1;transl_table=11
NC_004088.1	RefSeq	gene	592273	594327	.	+	.	ID=gene549;Name=Y_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02765;old_locus_tag=y0525
NC_004088.1	Protein Homology	CDS	592273	594327	.	+	0	ID=cds518;Parent=gene549;Dbxref=Genbank:WP_002356788.1;Name=WP_002356788.1;Note=with SsaC forms part of a protein export system across the inner and outer cell membranes%3B part of the Salmonella pathogenicity island 2%3B part of the type III secretion system;gbkey=CDS;product=secretion system apparatus protein SsaV;protein_id=WP_002356788.1;transl_table=11
NC_004088.1	RefSeq	gene	594314	595651	.	+	.	ID=gene550;Name=Y_RS02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02770;old_locus_tag=y0526
NC_004088.1	Protein Homology	CDS	594314	595651	.	+	0	ID=cds519;Parent=gene550;Dbxref=Genbank:WP_002209046.1;Name=WP_002209046.1;gbkey=CDS;product=type III secretion system ATPase;protein_id=WP_002209046.1;transl_table=11
NC_004088.1	RefSeq	gene	595648	596049	.	+	.	ID=gene551;Name=Y_RS02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02775;old_locus_tag=y0527
NC_004088.1	Protein Homology	CDS	595648	596049	.	+	0	ID=cds520;Parent=gene551;Dbxref=Genbank:WP_002209047.1;Name=WP_002209047.1;gbkey=CDS;product=type III secretion protein;protein_id=WP_002209047.1;transl_table=11
NC_004088.1	RefSeq	gene	596030	596428	.	+	.	ID=gene552;Name=Y_RS02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02780;old_locus_tag=y0528
NC_004088.1	Protein Homology	CDS	596030	596428	.	+	0	ID=cds521;Parent=gene552;Dbxref=Genbank:WP_002218091.1;Name=WP_002218091.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002218091.1;transl_table=11
NC_004088.1	RefSeq	gene	596406	597368	.	+	.	ID=gene553;Name=Y_RS02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02785;old_locus_tag=y0529
NC_004088.1	Protein Homology	CDS	596406	597368	.	+	0	ID=cds522;Parent=gene553;Dbxref=Genbank:WP_002209049.1;Name=WP_002209049.1;gbkey=CDS;product=type III secretion protein SsaQ;protein_id=WP_002209049.1;transl_table=11
NC_004088.1	RefSeq	gene	597495	598145	.	+	.	ID=gene554;Name=ssaR;gbkey=Gene;gene=ssaR;gene_biotype=protein_coding;gene_synonym=yscR;locus_tag=Y_RS02790;old_locus_tag=y0530
NC_004088.1	Protein Homology	CDS	597495	598145	.	+	0	ID=cds523;Parent=gene554;Dbxref=Genbank:WP_002221023.1;Name=WP_002221023.1;Note=part of a set of proteins involved in the infection of eukaryotic cells%3B in plant pathogens involved in the hypersensitivity response;gbkey=CDS;gene=ssaR;product=flagellar biosynthesis protein FliP;protein_id=WP_002221023.1;transl_table=11
NC_004088.1	RefSeq	gene	598142	598435	.	+	.	ID=gene555;Name=Y_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02795;old_locus_tag=y0531
NC_004088.1	Protein Homology	CDS	598142	598435	.	+	0	ID=cds524;Parent=gene555;Dbxref=Genbank:WP_002209051.1;Name=WP_002209051.1;gbkey=CDS;product=type III secretion system protein SsaS;protein_id=WP_002209051.1;transl_table=11
NC_004088.1	RefSeq	gene	598437	599231	.	+	.	ID=gene556;Name=Y_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02800;old_locus_tag=y0532
NC_004088.1	Protein Homology	CDS	598437	599231	.	+	0	ID=cds525;Parent=gene556;Dbxref=Genbank:WP_002209052.1;Name=WP_002209052.1;gbkey=CDS;product=type III secretion protein;protein_id=WP_002209052.1;transl_table=11
NC_004088.1	RefSeq	gene	599221	600288	.	+	.	ID=gene557;Name=Y_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02805;old_locus_tag=y0533
NC_004088.1	Protein Homology	CDS	599221	600288	.	+	0	ID=cds526;Parent=gene557;Dbxref=Genbank:WP_002209053.1;Name=WP_002209053.1;gbkey=CDS;product=secretion system apparatus protein SsaU;protein_id=WP_002209053.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	600407	600578	.	+	.	ID=id89;gbkey=repeat_region
NC_004088.1	RefSeq	gene	600671	601885	.	+	.	ID=gene558;Name=Y_RS02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02810;old_locus_tag=y0534
NC_004088.1	Protein Homology	CDS	600671	601885	.	+	0	ID=cds527;Parent=gene558;Dbxref=Genbank:WP_002209054.1;Name=WP_002209054.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209054.1;transl_table=11
NC_004088.1	RefSeq	gene	601882	602151	.	+	.	ID=gene559;Name=Y_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02815;old_locus_tag=y0535
NC_004088.1	Protein Homology	CDS	601882	602151	.	+	0	ID=cds528;Parent=gene559;Dbxref=Genbank:WP_002209055.1;Name=WP_002209055.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209055.1;transl_table=11
NC_004088.1	RefSeq	gene	602229	603212	.	-	.	ID=gene560;Name=Y_RS02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02820;old_locus_tag=y0536
NC_004088.1	Protein Homology	CDS	602229	603212	.	-	0	ID=cds529;Parent=gene560;Dbxref=Genbank:WP_002209056.1;Name=WP_002209056.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002209056.1;transl_table=11
NC_004088.1	RefSeq	gene	603382	604668	.	+	.	ID=gene561;Name=Y_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02825;old_locus_tag=y0537
NC_004088.1	Protein Homology	CDS	603382	604668	.	+	0	ID=cds530;Parent=gene561;Dbxref=Genbank:WP_002209057.1;Name=WP_002209057.1;gbkey=CDS;product=transporter;protein_id=WP_002209057.1;transl_table=11
NC_004088.1	RefSeq	gene	604714	605895	.	+	.	ID=gene562;Name=Y_RS02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02830;old_locus_tag=y0538
NC_004088.1	Protein Homology	CDS	604714	605895	.	+	0	ID=cds531;Parent=gene562;Dbxref=Genbank:WP_002215044.1;Name=WP_002215044.1;Note=catalyzes the formation of L-homocysteine from cystathionine;gbkey=CDS;product=cystathionine beta-lyase;protein_id=WP_002215044.1;transl_table=11
NC_004088.1	RefSeq	gene	606036	606836	.	-	.	ID=gene563;Name=hmuV;gbkey=Gene;gene=hmuV;gene_biotype=protein_coding;locus_tag=Y_RS02835;old_locus_tag=y0539
NC_004088.1	Protein Homology	CDS	606036	606836	.	-	0	ID=cds532;Parent=gene563;Dbxref=Genbank:WP_002209058.1;Name=WP_002209058.1;Note=with HmuTU is involved in the transport of hemin;gbkey=CDS;gene=hmuV;product=hemin import ATP-binding protein HmuV;protein_id=WP_002209058.1;transl_table=11
NC_004088.1	RefSeq	gene	606829	607833	.	-	.	ID=gene564;Name=Y_RS02840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02840;old_locus_tag=y0540
NC_004088.1	Protein Homology	CDS	606829	607833	.	-	0	ID=cds533;Parent=gene564;Dbxref=Genbank:WP_002209059.1;Name=WP_002209059.1;gbkey=CDS;product=hemin ABC transporter permease;protein_id=WP_002209059.1;transl_table=11
NC_004088.1	RefSeq	gene	607830	608669	.	-	.	ID=gene565;Name=Y_RS02845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02845;old_locus_tag=y0541
NC_004088.1	Protein Homology	CDS	607830	608669	.	-	0	ID=cds534;Parent=gene565;Dbxref=Genbank:WP_002209060.1;Name=WP_002209060.1;gbkey=CDS;product=hemin-binding periplasmic protein HmuT;protein_id=WP_002209060.1;transl_table=11
NC_004088.1	RefSeq	gene	608666	609703	.	-	.	ID=gene566;Name=Y_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02850;old_locus_tag=y0542
NC_004088.1	Protein Homology	CDS	608666	609703	.	-	0	ID=cds535;Parent=gene566;Dbxref=Genbank:WP_002209061.1;Name=WP_002209061.1;gbkey=CDS;product=hemin transporter HmuS;protein_id=WP_002209061.1;transl_table=11
NC_004088.1	RefSeq	gene	609822	611852	.	-	.	ID=gene567;Name=Y_RS02855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02855;old_locus_tag=y0543
NC_004088.1	Protein Homology	CDS	609822	611852	.	-	0	ID=cds536;Parent=gene567;Dbxref=Genbank:WP_002209062.1;Name=WP_002209062.1;gbkey=CDS;product=hemin receptor;protein_id=WP_002209062.1;transl_table=11
NC_004088.1	RefSeq	gene	612267	612917	.	-	.	ID=gene568;Name=Y_RS02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02860;old_locus_tag=y0545
NC_004088.1	Protein Homology	CDS	612267	612917	.	-	0	ID=cds537;Parent=gene568;Dbxref=Genbank:WP_002209064.1;Name=WP_002209064.1;gbkey=CDS;product=NmrA family protein;protein_id=WP_002209064.1;transl_table=11
NC_004088.1	RefSeq	gene	612951	613460	.	-	.	ID=gene569;Name=Y_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02865;old_locus_tag=y0546
NC_004088.1	Protein Homology	CDS	612951	613460	.	-	0	ID=cds538;Parent=gene569;Dbxref=Genbank:WP_002209065.1;Name=WP_002209065.1;gbkey=CDS;product=heme utilization carrier protein;protein_id=WP_002209065.1;transl_table=11
NC_004088.1	RefSeq	gene	613493	614806	.	-	.	ID=gene570;Name=Y_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02870;old_locus_tag=y0547
NC_004088.1	Protein Homology	CDS	613493	614806	.	-	0	ID=cds539;Parent=gene570;Dbxref=Genbank:WP_002209066.1;Name=WP_002209066.1;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;gbkey=CDS;product=heme utilization radical SAM enzyme HutW;protein_id=WP_002209066.1;transl_table=11
NC_004088.1	RefSeq	gene	615147	615947	.	-	.	ID=gene571;Name=Y_RS02875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02875;old_locus_tag=y0548
NC_004088.1	Protein Homology	CDS	615147	615947	.	-	0	ID=cds540;Parent=gene571;Dbxref=Genbank:WP_002209067.1;Name=WP_002209067.1;gbkey=CDS;product=methylenetetrahydrofolate reductase;protein_id=WP_002209067.1;transl_table=11
NC_004088.1	RefSeq	gene	616262	616750	.	-	.	ID=gene572;Name=Y_RS02880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02880;old_locus_tag=y0549
NC_004088.1	Protein Homology	CDS	616262	616750	.	-	0	ID=cds541;Parent=gene572;Dbxref=Genbank:WP_002209068.1;Name=WP_002209068.1;gbkey=CDS;product=tellurium resistance protein TerW;protein_id=WP_002209068.1;transl_table=11
NC_004088.1	RefSeq	gene	617147	618106	.	-	.	ID=gene573;Name=Y_RS02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02885;old_locus_tag=y0550
NC_004088.1	Protein Homology	CDS	617147	618106	.	-	0	ID=cds542;Parent=gene573;Dbxref=Genbank:WP_002209069.1;Name=WP_002209069.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_002209069.1;transl_table=11
NC_004088.1	RefSeq	gene	618106	619185	.	-	.	ID=gene574;Name=Y_RS02890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02890;old_locus_tag=y0551
NC_004088.1	Protein Homology	CDS	618106	619185	.	-	0	ID=cds543;Parent=gene574;Dbxref=Genbank:WP_002209070.1;Name=WP_002209070.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209070.1;transl_table=11
NC_004088.1	RefSeq	gene	619178	619990	.	-	.	ID=gene575;Name=Y_RS02895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02895;old_locus_tag=y0552
NC_004088.1	Protein Homology	CDS	619178	619990	.	-	0	ID=cds544;Parent=gene575;Dbxref=Genbank:WP_002209071.1;Name=WP_002209071.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209071.1;transl_table=11
NC_004088.1	RefSeq	gene	619983	621119	.	-	.	ID=gene576;Name=Y_RS02900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02900;old_locus_tag=y0553
NC_004088.1	Protein Homology	CDS	619983	621119	.	-	0	ID=cds545;Parent=gene576;Dbxref=Genbank:WP_002209072.1;Name=WP_002209072.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209072.1;transl_table=11
NC_004088.1	RefSeq	gene	621131	622192	.	-	.	ID=gene577;Name=Y_RS02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02905;old_locus_tag=y0554
NC_004088.1	Protein Homology	CDS	621131	622192	.	-	0	ID=cds546;Parent=gene577;Dbxref=Genbank:WP_002209073.1;Name=WP_002209073.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209073.1;transl_table=11
NC_004088.1	RefSeq	gene	622468	623061	.	+	.	ID=gene578;Name=Y_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02910;old_locus_tag=y0555
NC_004088.1	Protein Homology	CDS	622468	623061	.	+	0	ID=cds547;Parent=gene578;Dbxref=Genbank:WP_002228131.1;Name=WP_002228131.1;gbkey=CDS;product=tellurium resistance protein TerZ;protein_id=WP_002228131.1;transl_table=11
NC_004088.1	RefSeq	gene	623061	624245	.	+	.	ID=gene579;Name=Y_RS02915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02915;old_locus_tag=y0556
NC_004088.1	Protein Homology	CDS	623061	624245	.	+	0	ID=cds548;Parent=gene579;Dbxref=Genbank:WP_002209075.1;Name=WP_002209075.1;gbkey=CDS;product=tellurite resistance protein;protein_id=WP_002209075.1;transl_table=11
NC_004088.1	RefSeq	gene	624278	624733	.	+	.	ID=gene580;Name=Y_RS02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02920;old_locus_tag=y0557
NC_004088.1	Protein Homology	CDS	624278	624733	.	+	0	ID=cds549;Parent=gene580;Dbxref=Genbank:WP_002209076.1;Name=WP_002209076.1;gbkey=CDS;product=tellurite resistance protein;protein_id=WP_002209076.1;transl_table=11
NC_004088.1	RefSeq	gene	624755	625792	.	+	.	ID=gene581;Name=Y_RS02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02925;old_locus_tag=y0558
NC_004088.1	Protein Homology	CDS	624755	625792	.	+	0	ID=cds550;Parent=gene581;Dbxref=Genbank:WP_002209077.1;Name=WP_002209077.1;gbkey=CDS;product=tellurium resistance protein TerC;protein_id=WP_002209077.1;transl_table=11
NC_004088.1	RefSeq	gene	625856	626434	.	+	.	ID=gene582;Name=Y_RS02930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02930;old_locus_tag=y0559
NC_004088.1	Protein Homology	CDS	625856	626434	.	+	0	ID=cds551;Parent=gene582;Dbxref=Genbank:WP_002209078.1;Name=WP_002209078.1;gbkey=CDS;product=chemical-damaging agent resistance protein C;protein_id=WP_002209078.1;transl_table=11
NC_004088.1	RefSeq	gene	626618	627193	.	+	.	ID=gene583;Name=Y_RS02935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02935;old_locus_tag=y0560
NC_004088.1	Protein Homology	CDS	626618	627193	.	+	0	ID=cds552;Parent=gene583;Dbxref=Genbank:WP_002209079.1;Name=WP_002209079.1;gbkey=CDS;product=tellurium resistance protein TerE;protein_id=WP_002209079.1;transl_table=11
NC_004088.1	RefSeq	gene	627906	628544	.	+	.	ID=gene584;Name=Y_RS02940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02940;old_locus_tag=y0561
NC_004088.1	Protein Homology	CDS	627906	628544	.	+	0	ID=cds553;Parent=gene584;Dbxref=Genbank:WP_002209080.1;Name=WP_002209080.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209080.1;transl_table=11
NC_004088.1	RefSeq	gene	628795	631173	.	+	.	ID=gene585;Name=Y_RS02945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02945;old_locus_tag=y0562
NC_004088.1	Protein Homology	CDS	628795	631173	.	+	0	ID=cds554;Parent=gene585;Dbxref=Genbank:WP_002209081.1;Name=WP_002209081.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209081.1;transl_table=11
NC_004088.1	RefSeq	gene	631245	631988	.	+	.	ID=gene586;Name=Y_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02950;old_locus_tag=y0563
NC_004088.1	Protein Homology	CDS	631245	631988	.	+	0	ID=cds555;Parent=gene586;Dbxref=Genbank:WP_002209082.1;Name=WP_002209082.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002209082.1;transl_table=11
NC_004088.1	RefSeq	gene	631999	632253	.	+	.	ID=gene587;Name=Y_RS02955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02955;old_locus_tag=y0564
NC_004088.1	Protein Homology	CDS	631999	632253	.	+	0	ID=cds556;Parent=gene587;Dbxref=Genbank:WP_002214631.1;Name=WP_002214631.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214631.1;transl_table=11
NC_004088.1	RefSeq	gene	633446	634765	.	+	.	ID=gene588;Name=Y_RS02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02960;old_locus_tag=y0565
NC_004088.1	Protein Homology	CDS	633446	634765	.	+	0	ID=cds557;Parent=gene588;Dbxref=Genbank:WP_002214633.1;Name=WP_002214633.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214633.1;transl_table=11
NC_004088.1	RefSeq	gene	635282	635485	.	+	.	ID=gene589;Name=Y_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02965
NC_004088.1	Protein Homology	CDS	635282	635485	.	+	0	ID=cds558;Parent=gene589;Dbxref=Genbank:WP_002228683.1;Name=WP_002228683.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228683.1;transl_table=11
NC_004088.1	RefSeq	gene	635774	637831	.	+	.	ID=gene590;Name=Y_RS02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02970;old_locus_tag=y0566
NC_004088.1	Protein Homology	CDS	635774	637831	.	+	0	ID=cds559;Parent=gene590;Dbxref=Genbank:WP_002209085.1;Name=WP_002209085.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002209085.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	637854	638028	.	+	.	ID=id90;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	638167	640305	.	+	.	ID=id91;gbkey=repeat_region
NC_004088.1	RefSeq	gene	638175	641978	.	-	.	ID=gene591;Name=Y_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02975;old_locus_tag=y0567
NC_004088.1	Protein Homology	CDS	638175	641978	.	-	0	ID=cds560;Parent=gene591;Dbxref=Genbank:WP_002223972.1;Name=WP_002223972.1;gbkey=CDS;product=autotransporter;protein_id=WP_002223972.1;transl_table=11
NC_004088.1	RefSeq	gene	642810	643334	.	+	.	ID=gene592;Name=Y_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02980;old_locus_tag=y0568
NC_004088.1	Protein Homology	CDS	642810	643334	.	+	0	ID=cds561;Parent=gene592;Dbxref=Genbank:WP_002209087.1;Name=WP_002209087.1;gbkey=CDS;product=Chorismate pyruvate-lyase;protein_id=WP_002209087.1;transl_table=11
NC_004088.1	RefSeq	gene	643500	644366	.	+	.	ID=gene593;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=Y_RS02985;old_locus_tag=y0569
NC_004088.1	Protein Homology	CDS	643500	644366	.	+	0	ID=cds562;Parent=gene593;Dbxref=Genbank:WP_002209088.1;Name=WP_002209088.1;Note=catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate%2C as part of the ubiquinone biosynthesis pathway;gbkey=CDS;gene=ubiA;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_002209088.1;transl_table=11
NC_004088.1	RefSeq	gene	644547	647024	.	-	.	ID=gene594;Name=Y_RS02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02990;old_locus_tag=y0570
NC_004088.1	Protein Homology	CDS	644547	647024	.	-	0	ID=cds563;Parent=gene594;Dbxref=Genbank:WP_002214644.1;Name=WP_002214644.1;Note=PlsB%3B catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA;gbkey=CDS;product=glycerol-3-phosphate acyltransferase;protein_id=WP_002214644.1;transl_table=11
NC_004088.1	RefSeq	gene	647152	647523	.	+	.	ID=gene595;Name=Y_RS02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS02995;old_locus_tag=y0571
NC_004088.1	Protein Homology	CDS	647152	647523	.	+	0	ID=cds564;Parent=gene595;Dbxref=Genbank:WP_002209089.1;Name=WP_002209089.1;Note=catalyzes the phosphorylation of diacylglycerol to form diacylglycerol phosphate;gbkey=CDS;product=diacylglycerol kinase;protein_id=WP_002209089.1;transl_table=11
NC_004088.1	RefSeq	gene	647648	648256	.	+	.	ID=gene596;Name=Y_RS03000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03000;old_locus_tag=y0572
NC_004088.1	Protein Homology	CDS	647648	648256	.	+	0	ID=cds565;Parent=gene596;Dbxref=Genbank:WP_002209090.1;Name=WP_002209090.1;Note=Represses a number of genes involved in the response to DNA damage;gbkey=CDS;product=LexA repressor;protein_id=WP_002209090.1;transl_table=11
NC_004088.1	RefSeq	gene	648451	648960	.	-	.	ID=gene597;Name=Y_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03005;old_locus_tag=y0573
NC_004088.1	Protein Homology	CDS	648451	648960	.	-	0	ID=cds566;Parent=gene597;Dbxref=Genbank:WP_002214647.1;Name=WP_002214647.1;Note=Acts as a negative controlling element%2C employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002214647.1;transl_table=11
NC_004088.1	RefSeq	gene	649215	650252	.	+	.	ID=gene598;Name=Y_RS03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03010;old_locus_tag=y0574
NC_004088.1	Protein Homology	CDS	649215	650252	.	+	0	ID=cds567;Parent=gene598;Dbxref=Genbank:WP_002209092.1;Name=WP_002209092.1;gbkey=CDS;product=tRNA-dihydrouridine synthase A;protein_id=WP_002209092.1;transl_table=11
NC_004088.1	RefSeq	gene	650768	650986	.	+	.	ID=gene599;Name=Y_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03015;old_locus_tag=y0575
NC_004088.1	Protein Homology	CDS	650768	650986	.	+	0	ID=cds568;Parent=gene599;Dbxref=Genbank:WP_002209093.1;Name=WP_002209093.1;gbkey=CDS;product=phage-shock protein;protein_id=WP_002209093.1;transl_table=11
NC_004088.1	RefSeq	gene	651331	652314	.	-	.	ID=gene600;Name=Y_RS03020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03020;old_locus_tag=y0576
NC_004088.1	Protein Homology	CDS	651331	652314	.	-	0	ID=cds569;Parent=gene600;Dbxref=Genbank:WP_002209094.1;Name=WP_002209094.1;gbkey=CDS;product=quinone oxidoreductase;protein_id=WP_002209094.1;transl_table=11
NC_004088.1	RefSeq	gene	652646	654052	.	+	.	ID=gene601;Name=Y_RS03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03025;old_locus_tag=y0577
NC_004088.1	Protein Homology	CDS	652646	654052	.	+	0	ID=cds570;Parent=gene601;Dbxref=Genbank:WP_002209095.1;Name=WP_002209095.1;Note=unwinds double stranded DNA;gbkey=CDS;product=replicative DNA helicase;protein_id=WP_002209095.1;transl_table=11
NC_004088.1	RefSeq	gene	654149	655228	.	+	.	ID=gene602;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=Y_RS03030;old_locus_tag=y0578
NC_004088.1	Protein Homology	CDS	654149	655228	.	+	0	ID=cds571;Parent=gene602;Dbxref=Genbank:WP_002209096.1;Name=WP_002209096.1;Note=converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer;gbkey=CDS;gene=alr;product=alanine racemase;protein_id=WP_002209096.1;transl_table=11
NC_004088.1	RefSeq	gene	655413	656606	.	+	.	ID=gene603;Name=Y_RS03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03035;old_locus_tag=y0579
NC_004088.1	Protein Homology	CDS	655413	656606	.	+	0	ID=cds572;Parent=gene603;Dbxref=Genbank:WP_002209097.1;Name=WP_002209097.1;Note=catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate;gbkey=CDS;product=aromatic amino acid aminotransferase;protein_id=WP_002209097.1;transl_table=11
NC_004088.1	RefSeq	gene	657133	657492	.	+	.	ID=gene604;Name=Y_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03040
NC_004088.1	Protein Homology	CDS	657133	657492	.	+	0	ID=cds573;Parent=gene604;Dbxref=Genbank:WP_002209098.1;Name=WP_002209098.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209098.1;transl_table=11
NC_004088.1	RefSeq	gene	657585	660428	.	-	.	ID=gene605;Name=Y_RS03045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03045;old_locus_tag=y0580
NC_004088.1	Protein Homology	CDS	657585	660428	.	-	0	ID=cds574;Parent=gene605;Dbxref=Genbank:WP_002209099.1;Name=WP_002209099.1;gbkey=CDS;product=UvrABC system protein A;protein_id=WP_002209099.1;transl_table=11
NC_004088.1	RefSeq	gene	660886	661434	.	+	.	ID=gene606;Name=Y_RS03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03050;old_locus_tag=y0582
NC_004088.1	Protein Homology	CDS	660886	661434	.	+	0	ID=cds575;Parent=gene606;Dbxref=Genbank:WP_002209100.1;Name=WP_002209100.1;Note=binds to single stranded DNA and PriA helcase facilitate replication restart;gbkey=CDS;product=single-stranded DNA-binding protein;protein_id=WP_002209100.1;transl_table=11
NC_004088.1	RefSeq	gene	661681	661995	.	-	.	ID=gene607;Name=Y_RS03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03055;old_locus_tag=y0583
NC_004088.1	Protein Homology	CDS	661681	661995	.	-	0	ID=cds576;Parent=gene607;Dbxref=Genbank:WP_002209101.1;Name=WP_002209101.1;gbkey=CDS;product=L-rhamnose mutarotase;protein_id=WP_002209101.1;transl_table=11
NC_004088.1	RefSeq	gene	662009	663157	.	-	.	ID=gene608;Name=Y_RS03060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03060;old_locus_tag=y0584
NC_004088.1	Protein Homology	CDS	662009	663157	.	-	0	ID=cds577;Parent=gene608;Dbxref=Genbank:WP_002209102.1;Name=WP_002209102.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_002209102.1;transl_table=11
NC_004088.1	RefSeq	gene	663224	664048	.	-	.	ID=gene609;Name=Y_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03065;old_locus_tag=y0585
NC_004088.1	Protein Homology	CDS	663224	664048	.	-	0	ID=cds578;Parent=gene609;Dbxref=Genbank:WP_002209103.1;Name=WP_002209103.1;gbkey=CDS;product=rhamnulose-1-phosphate aldolase;protein_id=WP_002209103.1;transl_table=11
NC_004088.1	RefSeq	gene	664061	665317	.	-	.	ID=gene610;Name=Y_RS03070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03070;old_locus_tag=y0586
NC_004088.1	Protein Homology	CDS	664061	665317	.	-	0	ID=cds579;Parent=gene610;Dbxref=Genbank:WP_002209104.1;Name=WP_002209104.1;Note=catalyzes the formation of L-rhamnulose from L-rhamnose;gbkey=CDS;product=L-rhamnose isomerase;protein_id=WP_002209104.1;transl_table=11
NC_004088.1	RefSeq	gene	665314	666771	.	-	.	ID=gene611;Name=Y_RS03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03075;old_locus_tag=y0587
NC_004088.1	Protein Homology	CDS	665314	666771	.	-	0	ID=cds580;Parent=gene611;Dbxref=Genbank:WP_002209105.1;Name=WP_002209105.1;gbkey=CDS;product=rhamnulokinase;protein_id=WP_002209105.1;transl_table=11
NC_004088.1	RefSeq	gene	666770	666976	.	+	.	ID=gene612;Name=Y_RS03080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03080;old_locus_tag=y0588
NC_004088.1	Protein Homology	CDS	666770	666976	.	+	0	ID=cds581;Parent=gene612;Dbxref=Genbank:WP_002209106.1;Name=WP_002209106.1;gbkey=CDS;product=phosphoribosylaminoimidazole synthetase;protein_id=WP_002209106.1;transl_table=11
NC_004088.1	RefSeq	gene	666973	667116	.	+	.	ID=gene613;Name=Y_RS03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03085
NC_004088.1	Protein Homology	CDS	666973	667116	.	+	0	ID=cds582;Parent=gene613;Dbxref=Genbank:WP_002209107.1;Name=WP_002209107.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209107.1;transl_table=11
NC_004088.1	RefSeq	gene	667198	668019	.	+	.	ID=gene614;Name=Y_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03090;old_locus_tag=y0590
NC_004088.1	Protein Homology	CDS	667198	668019	.	+	0	ID=cds583;Parent=gene614;Dbxref=Genbank:WP_002209108.1;Name=WP_002209108.1;gbkey=CDS;product=transcriptional activator RhaS;protein_id=WP_002209108.1;transl_table=11
NC_004088.1	RefSeq	gene	668152	669024	.	+	.	ID=gene615;Name=Y_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03095;old_locus_tag=y0591
NC_004088.1	Protein Homology	CDS	668152	669024	.	+	0	ID=cds584;Parent=gene615;Dbxref=Genbank:WP_002209110.1;Name=WP_002209110.1;Note=activates the expression of rhaRS in response to L-rhamnose;gbkey=CDS;product=HTH-type transcriptional activator RhaR;protein_id=WP_002209110.1;transl_table=11
NC_004088.1	RefSeq	gene	669173	670207	.	-	.	ID=gene616;Name=Y_RS03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03100;old_locus_tag=y0593
NC_004088.1	Protein Homology	CDS	669173	670207	.	-	0	ID=cds585;Parent=gene616;Dbxref=Genbank:WP_002209111.1;Name=WP_002209111.1;Note=transports L-rhamnose and L-lyxose into the cell;gbkey=CDS;product=l-rhamnose-proton symporter;protein_id=WP_002209111.1;transl_table=11
NC_004088.1	RefSeq	gene	670361	670627	.	+	.	ID=gene617;Name=Y_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03105;old_locus_tag=y0594
NC_004088.1	Protein Homology	CDS	670361	670627	.	+	0	ID=cds586;Parent=gene617;Dbxref=Genbank:WP_002217947.1;Name=WP_002217947.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217947.1;transl_table=11
NC_004088.1	RefSeq	gene	671063	671488	.	-	.	ID=gene618;Name=Y_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03110;old_locus_tag=y0596
NC_004088.1	Protein Homology	CDS	671063	671488	.	-	0	ID=cds587;Parent=gene618;Dbxref=Genbank:WP_002209112.1;Name=WP_002209112.1;gbkey=CDS;product=subtilase;protein_id=WP_002209112.1;transl_table=11
NC_004088.1	RefSeq	gene	671718	671885	.	+	.	ID=gene619;Name=Y_RS03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03115
NC_004088.1	Protein Homology	CDS	671718	671885	.	+	0	ID=cds588;Parent=gene619;Dbxref=Genbank:WP_002209114.1;Name=WP_002209114.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209114.1;transl_table=11
NC_004088.1	RefSeq	gene	671915	674470	.	+	.	ID=gene620;Name=Y_RS03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03120;old_locus_tag=y0597
NC_004088.1	Protein Homology	CDS	671915	674470	.	+	0	ID=cds589;Parent=gene620;Dbxref=Genbank:WP_002209115.1;Name=WP_002209115.1;gbkey=CDS;product=viral enhancin protein;protein_id=WP_002209115.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	674899	675002	.	+	.	ID=id92;gbkey=repeat_region
NC_004088.1	RefSeq	gene	674904	674979	.	-	.	ID=gene621;Name=Y_RS03125;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS03125;old_locus_tag=yt017
NC_004088.1	tRNAscan-SE	tRNA	674904	674979	.	-	.	ID=rna31;Parent=gene621;anticodon=(pos:complement(674944..674946));gbkey=tRNA;product=tRNA-Phe
NC_004088.1	tRNAscan-SE	exon	674904	674979	.	-	.	ID=id93;Parent=rna31;anticodon=(pos:complement(674944..674946));gbkey=tRNA;product=tRNA-Phe
NC_004088.1	RefSeq	gene	675124	675699	.	-	.	ID=gene622;Name=Y_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03130;old_locus_tag=y0598
NC_004088.1	Protein Homology	CDS	675124	675699	.	-	0	ID=cds590;Parent=gene622;Dbxref=Genbank:WP_002209117.1;Name=WP_002209117.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209117.1;transl_table=11
NC_004088.1	RefSeq	gene	676119	678134	.	+	.	ID=gene623;Name=Y_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03135;old_locus_tag=y0599
NC_004088.1	Protein Homology	CDS	676119	678134	.	+	0	ID=cds591;Parent=gene623;Dbxref=Genbank:WP_002209118.1;Name=WP_002209118.1;Note=unknown function%3B in E. coli the aegA gene is regulated by Fnr%2C NarXL%2C and NarQ (but not ArcA)%2C induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic);gbkey=CDS;product=oxidoreductase Fe-S-binding subunit;protein_id=WP_002209118.1;transl_table=11
NC_004088.1	RefSeq	gene	678157	678714	.	+	.	ID=gene624;Name=Y_RS03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03140;old_locus_tag=y0600
NC_004088.1	Protein Homology	CDS	678157	678714	.	+	0	ID=cds592;Parent=gene624;Dbxref=Genbank:WP_002209119.1;Name=WP_002209119.1;gbkey=CDS;product=4Fe-4S ferredoxin;protein_id=WP_002209119.1;transl_table=11
NC_004088.1	RefSeq	gene	678737	680884	.	+	.	ID=gene625;Name=Y_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03145;old_locus_tag=y0601
NC_004088.1	Protein Homology	CDS	678737	680884	.	+	0	ID=cds593;Parent=gene625;Dbxref=Genbank:WP_002209120.1;Name=WP_002209120.1;Note=selenocysteine-containing polypeptide%3B hydrogen linked formate dehydrogenase which catalyzes the oxidation of formate;gbkey=CDS;product=formate dehydrogenase;protein_id=WP_002209120.1;transl_table=11
NC_004088.1	RefSeq	gene	680946	682733	.	-	.	ID=gene626;Name=dipZ;gbkey=Gene;gene=dipZ;gene_biotype=protein_coding;locus_tag=Y_RS03150;old_locus_tag=y0603
NC_004088.1	Protein Homology	CDS	680946	682733	.	-	0	ID=cds594;Parent=gene626;Dbxref=Genbank:WP_002209121.1;Name=WP_002209121.1;Note=two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm%3B DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm;gbkey=CDS;gene=dipZ;product=thiol:disulfide interchange protein DsbD;protein_id=WP_002209121.1;transl_table=11
NC_004088.1	RefSeq	gene	682709	683032	.	-	.	ID=gene627;Name=Y_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03155;old_locus_tag=y0604
NC_004088.1	Protein Homology	CDS	682709	683032	.	-	0	ID=cds595;Parent=gene627;Dbxref=Genbank:WP_002353622.1;Name=WP_002353622.1;Note=copper binding protein required for copper tolerance%3B involved in resistance toward heavy metals;gbkey=CDS;product=divalent ion tolerance protein CutA;protein_id=WP_002353622.1;transl_table=11
NC_004088.1	RefSeq	gene	683253	684554	.	-	.	ID=gene628;Name=Y_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03160;old_locus_tag=y0605
NC_004088.1	Protein Homology	CDS	683253	684554	.	-	0	ID=cds596;Parent=gene628;Dbxref=Genbank:WP_002209123.1;Name=WP_002209123.1;Note=functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to dcuB;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_002209123.1;transl_table=11
NC_004088.1	RefSeq	gene	684674	686110	.	-	.	ID=gene629;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=Y_RS03165;old_locus_tag=y0606
NC_004088.1	Protein Homology	CDS	684674	686110	.	-	0	ID=cds597;Parent=gene629;Dbxref=Genbank:WP_002232006.1;Name=WP_002232006.1;Note=catalyzes the formation of fumarate from aspartate;gbkey=CDS;gene=aspA;product=aspartate ammonia-lyase;protein_id=WP_002232006.1;transl_table=11
NC_004088.1	RefSeq	gene	686558	687136	.	+	.	ID=gene630;Name=Y_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03170;old_locus_tag=y0607
NC_004088.1	Protein Homology	CDS	686558	687136	.	+	0	ID=cds598;Parent=gene630;Dbxref=Genbank:WP_002209126.1;Name=WP_002209126.1;gbkey=CDS;product=exclusion suppressor FxsA;protein_id=WP_002209126.1;transl_table=11
NC_004088.1	RefSeq	gene	687391	687684	.	+	.	ID=gene631;Name=groES;gbkey=Gene;gene=groES;gene_biotype=protein_coding;locus_tag=Y_RS03175;old_locus_tag=y0608
NC_004088.1	Protein Homology	CDS	687391	687684	.	+	0	ID=cds599;Parent=gene631;Dbxref=Genbank:WP_002209127.1;Name=WP_002209127.1;Note=10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring;gbkey=CDS;gene=groES;product=molecular chaperone GroES;protein_id=WP_002209127.1;transl_table=11
NC_004088.1	RefSeq	gene	687731	689377	.	+	.	ID=gene632;Name=groEL;gbkey=Gene;gene=groEL;gene_biotype=protein_coding;locus_tag=Y_RS03180;old_locus_tag=y0609
NC_004088.1	Protein Homology	CDS	687731	689377	.	+	0	ID=cds600;Parent=gene632;Dbxref=Genbank:WP_002209128.1;Name=WP_002209128.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth;gbkey=CDS;gene=groEL;product=molecular chaperone GroEL;protein_id=WP_002209128.1;transl_table=11
NC_004088.1	RefSeq	gene	690001	690399	.	+	.	ID=gene633;Name=Y_RS03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03185
NC_004088.1	Protein Homology	CDS	690001	690399	.	+	0	ID=cds601;Parent=gene633;Dbxref=Genbank:WP_002209129.1;Name=WP_002209129.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209129.1;transl_table=11
NC_004088.1	RefSeq	gene	690684	691712	.	-	.	ID=gene634;Name=Y_RS03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03190;old_locus_tag=y0611
NC_004088.1	Protein Homology	CDS	690684	691712	.	-	0	ID=cds602;Parent=gene634;Dbxref=Genbank:WP_002228125.1;Name=WP_002228125.1;gbkey=CDS;product=EF-P beta-lysylation protein EpmB;protein_id=WP_002228125.1;transl_table=11
NC_004088.1	RefSeq	gene	691748	692314	.	+	.	ID=gene635;Name=Y_RS03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03195;old_locus_tag=y0612
NC_004088.1	Protein Homology	CDS	691748	692314	.	+	0	ID=cds603;Parent=gene635;Dbxref=Genbank:WP_002209131.1;Name=WP_002209131.1;gbkey=CDS;product=elongation factor P;protein_id=WP_002209131.1;transl_table=11
NC_004088.1	RefSeq	gene	692561	692875	.	+	.	ID=gene636;Name=Y_RS03200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03200
NC_004088.1	Protein Homology	CDS	692561	692875	.	+	0	ID=cds604;Parent=gene636;Dbxref=Genbank:WP_002228124.1;Name=WP_002228124.1;Note=member of the SMR family of proton-dependent drug efflux transporters%3B quaternary ammonium compound efflux pump%3B confers resistance to cetylpyridinium%2C cetyldimethylethyl ammonium and cetrimide cations;gbkey=CDS;product=quaternary ammonium compound-resistance protein SugE;protein_id=WP_002228124.1;transl_table=11
NC_004088.1	RefSeq	gene	693040	693396	.	-	.	ID=gene637;Name=Y_RS03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03205;old_locus_tag=y0614
NC_004088.1	Protein Homology	CDS	693040	693396	.	-	0	ID=cds605;Parent=gene637;Dbxref=Genbank:WP_002209134.1;Name=WP_002209134.1;gbkey=CDS;product=fumarate reductase subunit D;protein_id=WP_002209134.1;transl_table=11
NC_004088.1	RefSeq	gene	693413	693805	.	-	.	ID=gene638;Name=Y_RS03210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03210;old_locus_tag=y0615
NC_004088.1	Protein Homology	CDS	693413	693805	.	-	0	ID=cds606;Parent=gene638;Dbxref=Genbank:WP_002209135.1;Name=WP_002209135.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase subunit C;protein_id=WP_002209135.1;transl_table=11
NC_004088.1	RefSeq	gene	693822	694556	.	-	.	ID=gene639;Name=Y_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03215;old_locus_tag=y0616
NC_004088.1	Protein Homology	CDS	693822	694556	.	-	0	ID=cds607;Parent=gene639;Dbxref=Genbank:WP_002209136.1;Name=WP_002209136.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase iron-sulfur subunit;protein_id=WP_002209136.1;transl_table=11
NC_004088.1	RefSeq	gene	694549	696372	.	-	.	ID=gene640;Name=Y_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03220;old_locus_tag=y0617
NC_004088.1	Protein Homology	CDS	694549	696372	.	-	0	ID=cds608;Parent=gene640;Dbxref=Genbank:WP_002209137.1;Name=WP_002209137.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase flavoprotein subunit;protein_id=WP_002209137.1;transl_table=11
NC_004088.1	RefSeq	gene	696479	696670	.	+	.	ID=gene641;Name=Y_RS03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03225
NC_004088.1	Protein Homology	CDS	696479	696670	.	+	0	ID=cds609;Parent=gene641;Dbxref=Genbank:WP_002209138.1;Name=WP_002209138.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209138.1;transl_table=11
NC_004088.1	RefSeq	gene	696830	697807	.	+	.	ID=gene642;Name=Y_RS03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03230;old_locus_tag=y0618
NC_004088.1	Protein Homology	CDS	696830	697807	.	+	0	ID=cds610;Parent=gene642;Dbxref=Genbank:WP_002209139.1;Name=WP_002209139.1;Note=poxA%3B regulates pyruvate oxidase poxB;gbkey=CDS;product=elongation factor P--(R)-beta-lysine ligase;protein_id=WP_002209139.1;transl_table=11
NC_004088.1	RefSeq	gene	697928	701269	.	-	.	ID=gene643;Name=Y_RS03235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03235;old_locus_tag=y0619
NC_004088.1	Protein Homology	CDS	697928	701269	.	-	0	ID=cds611;Parent=gene643;Dbxref=Genbank:WP_002209140.1;Name=WP_002209140.1;gbkey=CDS;product=mechanosensitive channel protein;protein_id=WP_002209140.1;transl_table=11
NC_004088.1	RefSeq	gene	701311	702192	.	-	.	ID=gene644;Name=Y_RS03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03240;old_locus_tag=y0620
NC_004088.1	Protein Homology	CDS	701311	702192	.	-	0	ID=cds612;Parent=gene644;Dbxref=Genbank:WP_002209141.1;Name=WP_002209141.1;gbkey=CDS;product=phosphatidylserine decarboxylase proenzyme;protein_id=WP_002209141.1;transl_table=11
NC_004088.1	RefSeq	gene	702394	703446	.	-	.	ID=gene645;Name=Y_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03245;old_locus_tag=y0622
NC_004088.1	Protein Homology	CDS	702394	703446	.	-	0	ID=cds613;Parent=gene645;Dbxref=Genbank:WP_002209142.1;Name=WP_002209142.1;Note=EngC%3B RsgA%3B CpgA%3B circularly permuted GTPase%3B ribosome small subunit-dependent GTPase A%3B has the pattern G4-G1-G3 as opposed to other GTPases%3B interacts strongly with 30S ribosome which stimulates GTPase activity;gbkey=CDS;product=GTPase RsgA;protein_id=WP_002209142.1;transl_table=11
NC_004088.1	RefSeq	gene	703453	703647	.	-	.	ID=gene646;Name=Y_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03250
NC_004088.1	Protein Homology	CDS	703453	703647	.	-	0	ID=cds614;Parent=gene646;Dbxref=Genbank:WP_015683799.1;Name=WP_015683799.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_015683799.1;transl_table=11
NC_004088.1	RefSeq	gene	703646	704191	.	+	.	ID=gene647;Name=Y_RS03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03255;old_locus_tag=y0623
NC_004088.1	Protein Homology	CDS	703646	704191	.	+	0	ID=cds615;Parent=gene647;Dbxref=Genbank:WP_002209143.1;Name=WP_002209143.1;Note=3'-5' exoribonuclease specific for small oligoribonuclotides;gbkey=CDS;product=oligoribonuclease;protein_id=WP_002209143.1;transl_table=11
NC_004088.1	RefSeq	gene	704627	704702	.	+	.	ID=gene648;Name=Y_RS03265;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS03265;old_locus_tag=yt018
NC_004088.1	tRNAscan-SE	tRNA	704627	704702	.	+	.	ID=rna32;Parent=gene648;anticodon=(pos:704660..704662);gbkey=tRNA;product=tRNA-Gly
NC_004088.1	tRNAscan-SE	exon	704627	704702	.	+	.	ID=id94;Parent=rna32;anticodon=(pos:704660..704662);gbkey=tRNA;product=tRNA-Gly
NC_004088.1	RefSeq	gene	704794	704869	.	+	.	ID=gene649;Name=Y_RS03270;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS03270;old_locus_tag=yt019
NC_004088.1	tRNAscan-SE	tRNA	704794	704869	.	+	.	ID=rna33;Parent=gene649;anticodon=(pos:704827..704829);gbkey=tRNA;product=tRNA-Gly
NC_004088.1	tRNAscan-SE	exon	704794	704869	.	+	.	ID=id95;Parent=rna33;anticodon=(pos:704827..704829);gbkey=tRNA;product=tRNA-Gly
NC_004088.1	RefSeq	gene	705181	706416	.	-	.	ID=gene650;Name=Y_RS03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03275;old_locus_tag=y0624
NC_004088.1	Protein Homology	CDS	705181	706416	.	-	0	ID=cds616;Parent=gene650;Dbxref=Genbank:WP_002209144.1;Name=WP_002209144.1;gbkey=CDS;product=epoxyqueuosine reductase;protein_id=WP_002209144.1;transl_table=11
NC_004088.1	RefSeq	gene	706415	707929	.	+	.	ID=gene651;Name=Y_RS03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03280;old_locus_tag=y0625
NC_004088.1	Protein Homology	CDS	706415	707929	.	+	0	ID=cds617;Parent=gene651;Dbxref=Genbank:WP_002209145.1;Name=WP_002209145.1;gbkey=CDS;product=carbohydrate kinase;protein_id=WP_002209145.1;transl_table=11
NC_004088.1	RefSeq	gene	707940	708410	.	+	.	ID=gene652;Name=Y_RS03285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03285;old_locus_tag=y0626
NC_004088.1	Protein Homology	CDS	707940	708410	.	+	0	ID=cds618;Parent=gene652;Dbxref=Genbank:WP_002209146.1;Name=WP_002209146.1;Note=needed for nucleoid integrity%3B possibly involved in cell wall synthesis;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaE;protein_id=WP_002209146.1;transl_table=11
NC_004088.1	RefSeq	gene	708418	710331	.	+	.	ID=gene653;Name=Y_RS03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03290;old_locus_tag=y0627
NC_004088.1	Protein Homology	CDS	708418	710331	.	+	0	ID=cds619;Parent=gene653;Dbxref=Genbank:WP_002232017.1;Name=WP_002232017.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_002232017.1;transl_table=11
NC_004088.1	RefSeq	gene	710347	712254	.	+	.	ID=gene654;Name=Y_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03295;old_locus_tag=y0628
NC_004088.1	Protein Homology	CDS	710347	712254	.	+	0	ID=cds620;Parent=gene654;Dbxref=Genbank:WP_002209148.1;Name=WP_002209148.1;gbkey=CDS;product=DNA mismatch repair protein MutL;protein_id=WP_002209148.1;transl_table=11
NC_004088.1	RefSeq	gene	712247	713188	.	+	.	ID=gene655;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=Y_RS03300;old_locus_tag=y0629
NC_004088.1	Protein Homology	CDS	712247	713188	.	+	0	ID=cds621;Parent=gene655;Dbxref=Genbank:WP_002209149.1;Name=WP_002209149.1;Note=IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity;gbkey=CDS;gene=miaA;product=tRNA dimethylallyltransferase;protein_id=WP_002209149.1;transl_table=11
NC_004088.1	RefSeq	gene	713304	713609	.	+	.	ID=gene656;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=Y_RS03305;old_locus_tag=y0630
NC_004088.1	Protein Homology	CDS	713304	713609	.	+	0	ID=cds622;Parent=gene656;Dbxref=Genbank:WP_002209151.1;Name=WP_002209151.1;Note=HF-I%2C host factor for RNA phage Q beta replication;gbkey=CDS;gene=hfq;product=RNA chaperone Hfq;protein_id=WP_002209151.1;transl_table=11
NC_004088.1	RefSeq	gene	713708	714994	.	+	.	ID=gene657;Name=Y_RS03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03310;old_locus_tag=y0632
NC_004088.1	Protein Homology	CDS	713708	714994	.	+	0	ID=cds623;Parent=gene657;Dbxref=Genbank:WP_002209152.1;Name=WP_002209152.1;Note=involved in modulation of proteins HflK and HflC%3B part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein;gbkey=CDS;product=GTPase HflX;protein_id=WP_002209152.1;transl_table=11
NC_004088.1	RefSeq	gene	715235	716494	.	+	.	ID=gene658;Name=Y_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03315;old_locus_tag=y0633
NC_004088.1	Protein Homology	CDS	715235	716494	.	+	0	ID=cds624;Parent=gene658;Dbxref=Genbank:WP_002209154.1;Name=WP_002209154.1;Note=with HflC inhibits proteolysis of lambda cII protein by FtsH;gbkey=CDS;product=cell division protein FtsH;protein_id=WP_002209154.1;transl_table=11
NC_004088.1	RefSeq	gene	716498	717502	.	+	.	ID=gene659;Name=Y_RS03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03320;old_locus_tag=y0634
NC_004088.1	Protein Homology	CDS	716498	717502	.	+	0	ID=cds625;Parent=gene659;Dbxref=Genbank:WP_002209155.1;Name=WP_002209155.1;Note=with HflK inhibits proteolysis of lambda cII protein by FtsH;gbkey=CDS;product=cell division protein FtsH;protein_id=WP_002209155.1;transl_table=11
NC_004088.1	RefSeq	gene	717674	717874	.	+	.	ID=gene660;Name=Y_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03325
NC_004088.1	Protein Homology	CDS	717674	717874	.	+	0	ID=cds626;Parent=gene660;Dbxref=Genbank:WP_002217227.1;Name=WP_002217227.1;gbkey=CDS;product=membrane protein;protein_id=WP_002217227.1;transl_table=11
NC_004088.1	RefSeq	gene	717974	719272	.	+	.	ID=gene661;Name=Y_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03330;old_locus_tag=y0635
NC_004088.1	Protein Homology	CDS	717974	719272	.	+	0	ID=cds627;Parent=gene661;Dbxref=Genbank:WP_002209157.1;Name=WP_002209157.1;Note=catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis;gbkey=CDS;product=adenylosuccinate synthetase;protein_id=WP_002209157.1;transl_table=11
NC_004088.1	RefSeq	gene	719641	720066	.	+	.	ID=gene662;Name=Y_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03335;old_locus_tag=y0636
NC_004088.1	Protein Homology	CDS	719641	720066	.	+	0	ID=cds628;Parent=gene662;Dbxref=Genbank:WP_002217229.1;Name=WP_002217229.1;Note=negatively regulates the transcription of genes upregulated by nitrosative stress;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002217229.1;transl_table=11
NC_004088.1	RefSeq	gene	720307	722841	.	+	.	ID=gene663;Name=Y_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03340;old_locus_tag=y0637
NC_004088.1	Protein Homology	CDS	720307	722841	.	+	0	ID=cds629;Parent=gene663;Dbxref=Genbank:WP_002209159.1;Name=WP_002209159.1;Note=3'-5'exoribonuclease that acts nonspecifically on poly(A)%2C poly(U) and ribosomal RNAs;gbkey=CDS;product=exoribonuclease R;protein_id=WP_002209159.1;transl_table=11
NC_004088.1	RefSeq	gene	722960	723700	.	+	.	ID=gene664;Name=Y_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03345;old_locus_tag=y0638
NC_004088.1	Protein Homology	CDS	722960	723700	.	+	0	ID=cds630;Parent=gene664;Dbxref=Genbank:WP_002209161.1;Name=WP_002209161.1;Note=Specifically methylates the ribose of guanosine 2251 in 23S rRNA;gbkey=CDS;product=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;protein_id=WP_002209161.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	723776	723950	.	+	.	ID=id96;gbkey=repeat_region
NC_004088.1	RefSeq	gene	724120	725751	.	+	.	ID=gene665;Name=Y_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03350;old_locus_tag=y0639
NC_004088.1	Protein Homology	CDS	724120	725751	.	+	0	ID=cds631;Parent=gene665;Dbxref=Genbank:WP_002353634.1;Name=WP_002353634.1;Note=catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA;gbkey=CDS;product=isovaleryl CoA dehydrogenase;protein_id=WP_002353634.1;transl_table=11
NC_004088.1	RefSeq	gene	725823	726134	.	-	.	ID=gene666;Name=Y_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03355;old_locus_tag=y0640
NC_004088.1	Protein Homology	CDS	725823	726134	.	-	0	ID=cds632;Parent=gene666;Dbxref=Genbank:WP_002215294.1;Name=WP_002215294.1;Note=in Escherichia coli%2C mutation of this gene affects biofilm maturation%2C stress response%2C and motility;gbkey=CDS;product=transporter;protein_id=WP_002215294.1;transl_table=11
NC_004088.1	RefSeq	gene	726325	726423	.	+	.	ID=gene667;Name=Y_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03360;old_locus_tag=y0641
NC_004088.1	Protein Homology	CDS	726325	726423	.	+	0	ID=cds633;Parent=gene667;Dbxref=Genbank:WP_002215296.1;Name=WP_002215296.1;gbkey=CDS;product=phospholipase;protein_id=WP_002215296.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	726404	728363	.	+	.	ID=id97;gbkey=repeat_region
NC_004088.1	RefSeq	region	726408	728361	.	-	.	ID=id98;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	726474	727253	.	-	.	ID=gene668;Name=Y_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03365;old_locus_tag=y0642
NC_004088.1	Protein Homology	CDS	726474	727253	.	-	0	ID=cds634;Parent=gene668;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	727253	728275	.	-	.	ID=gene669;Name=Y_RS03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03370;old_locus_tag=y0643
NC_004088.1	Protein Homology	CDS	727253	728275	.	-	0	ID=cds635;Parent=gene669;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	728332	729033	.	+	.	ID=gene670;Name=Y_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03375;old_locus_tag=y0644
NC_004088.1	Protein Homology	CDS	728332	729033	.	+	0	ID=cds636;Parent=gene670;Dbxref=Genbank:WP_002210152.1;Name=WP_002210152.1;Note=YjfP%3B esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro%3B unknown function and substrate in vivo;gbkey=CDS;product=esterase;protein_id=WP_002210152.1;transl_table=11
NC_004088.1	RefSeq	gene	729108	729386	.	+	.	ID=gene671;Name=Y_RS03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03380
NC_004088.1	Protein Homology	CDS	729108	729386	.	+	0	ID=cds637;Parent=gene671;Dbxref=Genbank:WP_002228199.1;Name=WP_002228199.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228199.1;transl_table=11
NC_004088.1	RefSeq	gene	729400	729792	.	+	.	ID=gene672;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=Y_RS03385;old_locus_tag=y0645
NC_004088.1	Protein Homology	CDS	729400	729792	.	+	0	ID=cds638;Parent=gene672;Dbxref=Genbank:WP_002210153.1;Name=WP_002210153.1;Note=binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21;gbkey=CDS;gene=rpsF;product=30S ribosomal protein S6;protein_id=WP_002210153.1;transl_table=11
NC_004088.1	RefSeq	gene	729801	730118	.	+	.	ID=gene673;Name=Y_RS03390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03390
NC_004088.1	Protein Homology	CDS	729801	730118	.	+	0	ID=cds639;Parent=gene673;Dbxref=Genbank:WP_002430134.1;Name=WP_002430134.1;Note=binds single-stranded DNA at the primosome assembly site;gbkey=CDS;product=primosomal replication protein n;protein_id=WP_002430134.1;transl_table=11
NC_004088.1	RefSeq	gene	730123	730350	.	+	.	ID=gene674;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=Y_RS03395;old_locus_tag=y0646
NC_004088.1	Protein Homology	CDS	730123	730350	.	+	0	ID=cds640;Parent=gene674;Dbxref=Genbank:WP_002210155.1;Name=WP_002210155.1;Note=binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit;gbkey=CDS;gene=rpsR;product=30S ribosomal protein S18;protein_id=WP_002210155.1;transl_table=11
NC_004088.1	RefSeq	gene	730390	730842	.	+	.	ID=gene675;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=Y_RS03400;old_locus_tag=y0647
NC_004088.1	Protein Homology	CDS	730390	730842	.	+	0	ID=cds641;Parent=gene675;Dbxref=Genbank:WP_002210156.1;Name=WP_002210156.1;Note=in Escherichia coli this protein is wrapped around the base of the L1 stalk;gbkey=CDS;gene=rplI;product=50S ribosomal protein L9;protein_id=WP_002210156.1;transl_table=11
NC_004088.1	RefSeq	gene	730878	731048	.	+	.	ID=gene676;Name=Y_RS03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03405
NC_004088.1	Protein Homology	CDS	730878	731048	.	+	0	ID=cds642;Parent=gene676;Dbxref=Genbank:WP_025470773.1;Name=WP_025470773.1;gbkey=CDS;product=transposase;protein_id=WP_025470773.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	730892	731609	.	+	.	ID=id99;gbkey=repeat_region
NC_004088.1	RefSeq	region	730893	731602	.	+	.	ID=id100;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	731038	731496	.	+	.	ID=gene677;Name=Y_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03410;old_locus_tag=y0648
NC_004088.1	Protein Homology	CDS	731038	731496	.	+	0	ID=cds643;Parent=gene677;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	731618	732073	.	-	.	ID=gene678;Name=Y_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03415;old_locus_tag=y0649
NC_004088.1	Protein Homology	CDS	731618	732073	.	-	0	ID=cds644;Parent=gene678;Dbxref=Genbank:WP_002210157.1;Name=WP_002210157.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210157.1;transl_table=11
NC_004088.1	RefSeq	gene	732213	732953	.	-	.	ID=gene679;Name=Y_RS03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03420;old_locus_tag=y0650
NC_004088.1	Protein Homology	CDS	732213	732953	.	-	0	ID=cds645;Parent=gene679;Dbxref=Genbank:WP_002210158.1;Name=WP_002210158.1;gbkey=CDS;product=peptidoglycan-binding protein LysM;protein_id=WP_002210158.1;transl_table=11
NC_004088.1	RefSeq	gene	733296	733916	.	+	.	ID=gene680;Name=Y_RS03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03425;old_locus_tag=y0651
NC_004088.1	Protein Homology	CDS	733296	733916	.	+	0	ID=cds646;Parent=gene680;Dbxref=Genbank:WP_002228198.1;Name=WP_002228198.1;Note=FKBP-type%3B rotamase%3B catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_002228198.1;transl_table=11
NC_004088.1	RefSeq	gene	734014	734679	.	-	.	ID=gene681;Name=Y_RS03430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03430;old_locus_tag=y0652
NC_004088.1	Protein Homology	CDS	734014	734679	.	-	0	ID=cds647;Parent=gene681;Dbxref=Genbank:WP_002210159.1;Name=WP_002210159.1;Note=Involved in anaerobic NO protection and iron metabolism;gbkey=CDS;product=iron-sulfur cluster repair protein YtfE;protein_id=WP_002210159.1;transl_table=11
NC_004088.1	RefSeq	gene	734834	736804	.	-	.	ID=gene682;Name=cpdB;gbkey=Gene;gene=cpdB;gene_biotype=protein_coding;locus_tag=Y_RS03435;old_locus_tag=y0653
NC_004088.1	Protein Homology	CDS	734834	736804	.	-	0	ID=cds648;Parent=gene682;Dbxref=Genbank:WP_002210160.1;Name=WP_002210160.1;Note=periplasmic enzyme%3B functions during ribonucleic acid degradation%3B 2'%2C3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate;gbkey=CDS;gene=cpdB;product=3'-nucleotidase;protein_id=WP_002210160.1;transl_table=11
NC_004088.1	RefSeq	gene	737239	737979	.	+	.	ID=gene683;Name=Y_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03440;old_locus_tag=y0654
NC_004088.1	Protein Homology	CDS	737239	737979	.	+	0	ID=cds649;Parent=gene683;Dbxref=Genbank:WP_002220539.1;Name=WP_002220539.1;Note=catalyzes the formation of AMP from adenosine-3'%2C5'-bisphosphate;gbkey=CDS;product=3'-5'-bisphosphate nucleotidase;protein_id=WP_002220539.1;transl_table=11
NC_004088.1	RefSeq	gene	737982	738545	.	-	.	ID=gene684;Name=Y_RS03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03445;old_locus_tag=y0655
NC_004088.1	Protein Homology	CDS	737982	738545	.	-	0	ID=cds650;Parent=gene684;Dbxref=Genbank:WP_002223134.1;Name=WP_002223134.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002223134.1;transl_table=11
NC_004088.1	RefSeq	gene	738881	739093	.	+	.	ID=gene685;Name=Y_RS03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03450;old_locus_tag=y0656
NC_004088.1	Protein Homology	CDS	738881	739093	.	+	0	ID=cds651;Parent=gene685;Dbxref=Genbank:WP_002210163.1;Name=WP_002210163.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210163.1;transl_table=11
NC_004088.1	RefSeq	gene	739201	740532	.	-	.	ID=gene686;Name=Y_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03455;old_locus_tag=y0657
NC_004088.1	Protein Homology	CDS	739201	740532	.	-	0	ID=cds652;Parent=gene686;Dbxref=Genbank:WP_002210164.1;Name=WP_002210164.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210164.1;transl_table=11
NC_004088.1	RefSeq	gene	740810	741448	.	-	.	ID=gene687;Name=Y_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03460;old_locus_tag=y0658
NC_004088.1	Protein Homology	CDS	740810	741448	.	-	0	ID=cds653;Parent=gene687;Dbxref=Genbank:WP_002210165.1;Name=WP_002210165.1;Note=this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form%3B provides protection against oxidative stress;gbkey=CDS;product=peptide methionine sulfoxide reductase MsrA;protein_id=WP_002210165.1;transl_table=11
NC_004088.1	RefSeq	gene	741723	743459	.	+	.	ID=gene688;Name=Y_RS03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03465;old_locus_tag=y0659
NC_004088.1	Protein Homology	CDS	741723	743459	.	+	0	ID=cds654;Parent=gene688;Dbxref=Genbank:WP_002210166.1;Name=WP_002210166.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210166.1;transl_table=11
NC_004088.1	RefSeq	gene	743456	747373	.	+	.	ID=gene689;Name=Y_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03470;old_locus_tag=y0661
NC_004088.1	Protein Homology	CDS	743456	747373	.	+	0	ID=cds655;Parent=gene689;Dbxref=Genbank:WP_002210167.1;Name=WP_002210167.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210167.1;transl_table=11
NC_004088.1	RefSeq	gene	747376	747732	.	+	.	ID=gene690;Name=Y_RS03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03475;old_locus_tag=y0662
NC_004088.1	Protein Homology	CDS	747376	747732	.	+	0	ID=cds656;Parent=gene690;Dbxref=Genbank:WP_002210168.1;Name=WP_002210168.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210168.1;transl_table=11
NC_004088.1	RefSeq	gene	747850	748377	.	-	.	ID=gene691;Name=Y_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03480;old_locus_tag=y0663
NC_004088.1	Protein Homology	CDS	747850	748377	.	-	0	ID=cds657;Parent=gene691;Dbxref=Genbank:WP_002210169.1;Name=WP_002210169.1;Note=catalyzes the hydrolysis of pyrophosphate to phosphate;gbkey=CDS;product=inorganic pyrophosphatase;protein_id=WP_002210169.1;transl_table=11
NC_004088.1	RefSeq	gene	748577	749590	.	-	.	ID=gene692;Name=Y_RS03485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03485;old_locus_tag=y0664
NC_004088.1	Protein Homology	CDS	748577	749590	.	-	0	ID=cds658;Parent=gene692;Dbxref=Genbank:WP_002216946.1;Name=WP_002216946.1;Note=catalyzes the formation of D-fructose 6-phosphate from fructose-1%2C6-bisphosphate;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_002216946.1;transl_table=11
NC_004088.1	RefSeq	gene	749761	751143	.	+	.	ID=gene693;Name=Y_RS03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03490;old_locus_tag=y0665
NC_004088.1	Protein Homology	CDS	749761	751143	.	+	0	ID=cds659;Parent=gene693;Dbxref=Genbank:WP_002210171.1;Name=WP_002210171.1;Note=ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan;gbkey=CDS;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_002210171.1;transl_table=11
NC_004088.1	RefSeq	gene	751230	751436	.	+	.	ID=gene694;Name=Y_RS03495;gbkey=Gene;gene_biotype=other;locus_tag=Y_RS03495
NC_004088.1	RefSeq	repeat_region	751246	751414	.	+	.	ID=id101;gbkey=repeat_region
NC_004088.1	RefSeq	gene	751439	751702	.	-	.	ID=gene695;Name=Y_RS03500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03500;old_locus_tag=y0666
NC_004088.1	Protein Homology	CDS	751439	751702	.	-	0	ID=cds660;Parent=gene695;Dbxref=Genbank:WP_002210172.1;Name=WP_002210172.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210172.1;transl_table=11
NC_004088.1	RefSeq	gene	752091	752561	.	-	.	ID=gene696;Name=Y_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03505;old_locus_tag=y0667
NC_004088.1	Protein Homology	CDS	752091	752561	.	-	0	ID=cds661;Parent=gene696;Dbxref=Genbank:WP_002210173.1;Name=WP_002210173.1;Note=regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes;gbkey=CDS;product=arginine repressor;protein_id=WP_002210173.1;transl_table=11
NC_004088.1	RefSeq	gene	753025	753963	.	+	.	ID=gene697;Name=Y_RS03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03510;old_locus_tag=y0668
NC_004088.1	Protein Homology	CDS	753025	753963	.	+	0	ID=cds662;Parent=gene697;Dbxref=Genbank:WP_002210174.1;Name=WP_002210174.1;Note=oxidizes malate to oxaloacetate;gbkey=CDS;product=malate dehydrogenase;protein_id=WP_002210174.1;transl_table=11
NC_004088.1	RefSeq	gene	754397	754672	.	-	.	ID=gene698;Name=Y_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03515;old_locus_tag=y0669
NC_004088.1	Protein Homology	CDS	754397	754672	.	-	0	ID=cds663;Parent=gene698;Dbxref=Genbank:WP_002210175.1;Name=WP_002210175.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002210175.1;transl_table=11
NC_004088.1	RefSeq	gene	754856	755203	.	+	.	ID=gene699;Name=Y_RS03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03520;old_locus_tag=y0670
NC_004088.1	Protein Homology	CDS	754856	755203	.	+	0	ID=cds664;Parent=gene699;Dbxref=Genbank:WP_002210176.1;Name=WP_002210176.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002210176.1;transl_table=11
NC_004088.1	RefSeq	gene	755300	756271	.	-	.	ID=gene700;Name=Y_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03525;old_locus_tag=y0671
NC_004088.1	Protein Homology	CDS	755300	756271	.	-	0	ID=cds665;Parent=gene700;Dbxref=Genbank:WP_002210177.1;Name=WP_002210177.1;gbkey=CDS;product=octaprenyl diphosphate synthase;protein_id=WP_002210177.1;transl_table=11
NC_004088.1	RefSeq	gene	756531	756842	.	+	.	ID=gene701;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=Y_RS03530;old_locus_tag=y0672
NC_004088.1	Protein Homology	CDS	756531	756842	.	+	0	ID=cds666;Parent=gene701;Dbxref=Genbank:WP_002210178.1;Name=WP_002210178.1;gbkey=CDS;gene=rplU;product=50S ribosomal protein L21;protein_id=WP_002210178.1;transl_table=11
NC_004088.1	RefSeq	gene	756862	757119	.	+	.	ID=gene702;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=Y_RS03535;old_locus_tag=y0673
NC_004088.1	Protein Homology	CDS	756862	757119	.	+	0	ID=cds667;Parent=gene702;Dbxref=Genbank:WP_002210179.1;Name=WP_002210179.1;Note=involved in the peptidyltransferase reaction during translation;gbkey=CDS;gene=rpmA;product=50S ribosomal protein L27;protein_id=WP_002210179.1;transl_table=11
NC_004088.1	RefSeq	gene	757207	758193	.	+	.	ID=gene703;Name=Y_RS03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03540;old_locus_tag=y0674
NC_004088.1	Protein Homology	CDS	757207	758193	.	+	0	ID=cds668;Parent=gene703;Dbxref=Genbank:WP_002210180.1;Name=WP_002210180.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210180.1;transl_table=11
NC_004088.1	RefSeq	gene	758194	759366	.	+	.	ID=gene704;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;gene_synonym=cgtA,obg,yhbZ;locus_tag=Y_RS03545;old_locus_tag=y0675
NC_004088.1	Protein Homology	CDS	758194	759366	.	+	0	ID=cds669;Parent=gene704;Dbxref=Genbank:WP_002210181.1;Name=WP_002210181.1;Note=ObgE%3B essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication;gbkey=CDS;gene=obgE;product=GTPase Obg;protein_id=WP_002210181.1;transl_table=11
NC_004088.1	RefSeq	gene	759461	760528	.	-	.	ID=gene705;Name=Y_RS03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03550;old_locus_tag=y0676
NC_004088.1	Protein Homology	CDS	759461	760528	.	-	0	ID=cds670;Parent=gene705;Dbxref=Genbank:WP_002210182.1;Name=WP_002210182.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_002210182.1;transl_table=11
NC_004088.1	RefSeq	gene	760525	761187	.	-	.	ID=gene706;Name=Y_RS03555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03555;old_locus_tag=y0677
NC_004088.1	Protein Homology	CDS	760525	761187	.	-	0	ID=cds671;Parent=gene706;Dbxref=Genbank:WP_002210183.1;Name=WP_002210183.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002210183.1;transl_table=11
NC_004088.1	RefSeq	gene	761193	762641	.	-	.	ID=gene707;Name=Y_RS03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03560;old_locus_tag=y0678
NC_004088.1	Protein Homology	CDS	761193	762641	.	-	0	ID=cds672;Parent=gene707;Dbxref=Genbank:WP_002217314.1;Name=WP_002217314.1;Note=penicillin binding protein 4%3B penicillin sensitive%3B catalyzes the formation of D-alanine from D-alanyl-D-alanine%3B one of four%2C DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_002217314.1;transl_table=11
NC_004088.1	RefSeq	gene	762899	763375	.	+	.	ID=gene708;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=Y_RS03565;old_locus_tag=y0679
NC_004088.1	Protein Homology	CDS	762899	763375	.	+	0	ID=cds673;Parent=gene708;Dbxref=Genbank:WP_002210184.1;Name=WP_002210184.1;Note=necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus;gbkey=CDS;gene=greA;product=transcription elongation factor GreA;protein_id=WP_002210184.1;transl_table=11
NC_004088.1	RefSeq	gene	763503	763796	.	-	.	ID=gene709;Name=Y_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03570;old_locus_tag=y0680
NC_004088.1	Protein Homology	CDS	763503	763796	.	-	0	ID=cds674;Parent=gene709;Dbxref=Genbank:WP_002210185.1;Name=WP_002210185.1;Note=RNA binding protein found associated to pre-50S subunit of the ribosome%3B putative role in ribosome assembly%3B necessary for optimal growth but not cell viability;gbkey=CDS;product=RNA-binding protein;protein_id=WP_002210185.1;transl_table=11
NC_004088.1	RefSeq	gene	763943	764572	.	+	.	ID=gene710;Name=rrmJ;gbkey=Gene;gene=rrmJ;gene_biotype=protein_coding;locus_tag=Y_RS03575;old_locus_tag=y0681
NC_004088.1	Protein Homology	CDS	763943	764572	.	+	0	ID=cds675;Parent=gene710;Dbxref=Genbank:WP_002228196.1;Name=WP_002228196.1;Note=Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit;gbkey=CDS;gene=rrmJ;product=ribosomal RNA large subunit methyltransferase E;protein_id=WP_002228196.1;transl_table=11
NC_004088.1	RefSeq	gene	764629	766563	.	+	.	ID=gene711;Name=hflB;gbkey=Gene;gene=hflB;gene_biotype=protein_coding;gene_synonym=ftsH;locus_tag=Y_RS03580;old_locus_tag=y0682
NC_004088.1	Protein Homology	CDS	764629	766563	.	+	0	ID=cds676;Parent=gene711;Dbxref=Genbank:WP_002228195.1;Name=WP_002228195.1;Note=inner membrane metalloprotease%3B may be involved in degradation of aberrant cytoplasmic and membrane proteins;gbkey=CDS;gene=hflB;product=ATP-dependent metalloprotease;protein_id=WP_002228195.1;transl_table=11
NC_004088.1	RefSeq	gene	766683	767516	.	+	.	ID=gene712;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=Y_RS03585;old_locus_tag=y0683
NC_004088.1	Protein Homology	CDS	766683	767516	.	+	0	ID=cds677;Parent=gene712;Dbxref=Genbank:WP_002210188.1;Name=WP_002210188.1;Note=catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine diphosphate and 4-aminobenzoate;gbkey=CDS;gene=folP;product=dihydropteroate synthase;protein_id=WP_002210188.1;transl_table=11
NC_004088.1	RefSeq	gene	767526	768866	.	+	.	ID=gene713;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=Y_RS03590;old_locus_tag=y0684
NC_004088.1	Protein Homology	CDS	767526	768866	.	+	0	ID=cds678;Parent=gene713;Dbxref=Genbank:WP_002210189.1;Name=WP_002210189.1;Note=catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate;gbkey=CDS;gene=glmM;product=phosphoglucosamine mutase;protein_id=WP_002210189.1;transl_table=11
NC_004088.1	RefSeq	gene	769089	769424	.	+	.	ID=gene714;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=Y_RS03595;old_locus_tag=y0685
NC_004088.1	Protein Homology	CDS	769089	769424	.	+	0	ID=cds679;Parent=gene714;Dbxref=Genbank:WP_002210190.1;Name=WP_002210190.1;gbkey=CDS;gene=secG;product=preprotein translocase subunit SecG;protein_id=WP_002210190.1;transl_table=11
NC_004088.1	RefSeq	gene	769517	769603	.	+	.	ID=gene715;Name=Y_RS03600;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS03600;old_locus_tag=yt020
NC_004088.1	tRNAscan-SE	tRNA	769517	769603	.	+	.	ID=rna34;Parent=gene715;anticodon=(pos:769551..769553);gbkey=tRNA;product=tRNA-Leu
NC_004088.1	tRNAscan-SE	exon	769517	769603	.	+	.	ID=id102;Parent=rna34;anticodon=(pos:769551..769553);gbkey=tRNA;product=tRNA-Leu
NC_004088.1	RefSeq	gene	769664	769740	.	+	.	ID=gene716;Name=Y_RS03605;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS03605;old_locus_tag=yt021
NC_004088.1	tRNAscan-SE	tRNA	769664	769740	.	+	.	ID=rna35;Parent=gene716;anticodon=(pos:769698..769700);gbkey=tRNA;product=tRNA-Met
NC_004088.1	tRNAscan-SE	exon	769664	769740	.	+	.	ID=id103;Parent=rna35;anticodon=(pos:769698..769700);gbkey=tRNA;product=tRNA-Met
NC_004088.1	RefSeq	gene	769956	770408	.	+	.	ID=gene717;Name=Y_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03610;old_locus_tag=y0686
NC_004088.1	Protein Homology	CDS	769956	770408	.	+	0	ID=cds680;Parent=gene717;Dbxref=Genbank:WP_002222054.1;Name=WP_002222054.1;Note=required for the maturation of the 30S ribosomal subunits;gbkey=CDS;product=ribosome maturation factor RimP;protein_id=WP_002222054.1;transl_table=11
NC_004088.1	RefSeq	gene	770430	771917	.	+	.	ID=gene718;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=Y_RS03615;old_locus_tag=y0687
NC_004088.1	Protein Homology	CDS	770430	771917	.	+	0	ID=cds681;Parent=gene718;Dbxref=Genbank:WP_002209253.1;Name=WP_002209253.1;Note=modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination;gbkey=CDS;gene=nusA;product=transcription termination factor NusA;protein_id=WP_002209253.1;transl_table=11
NC_004088.1	RefSeq	gene	771942	774620	.	+	.	ID=gene719;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=Y_RS03620;old_locus_tag=y0688
NC_004088.1	Protein Homology	CDS	771942	774620	.	+	0	ID=cds682;Parent=gene719;Dbxref=Genbank:WP_002223151.1;Name=WP_002223151.1;Note=Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex;gbkey=CDS;gene=infB;product=translation initiation factor IF-2;protein_id=WP_002223151.1;transl_table=11
NC_004088.1	RefSeq	gene	774686	775096	.	+	.	ID=gene720;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=Y_RS03625;old_locus_tag=y0689
NC_004088.1	Protein Homology	CDS	774686	775096	.	+	0	ID=cds683;Parent=gene720;Dbxref=Genbank:WP_002209255.1;Name=WP_002209255.1;Note=associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock;gbkey=CDS;gene=rbfA;product=ribosome-binding factor A;protein_id=WP_002209255.1;transl_table=11
NC_004088.1	RefSeq	gene	775096	776070	.	+	.	ID=gene721;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=Y_RS03630;old_locus_tag=y0690
NC_004088.1	Protein Homology	CDS	775096	776070	.	+	0	ID=cds684;Parent=gene721;Dbxref=Genbank:WP_002209256.1;Name=WP_002209256.1;Note=catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs;gbkey=CDS;gene=truB;product=tRNA pseudouridine synthase B;protein_id=WP_002209256.1;transl_table=11
NC_004088.1	RefSeq	gene	776192	776461	.	+	.	ID=gene722;Name=Y_RS03635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03635;old_locus_tag=y0691
NC_004088.1	Protein Homology	CDS	776192	776461	.	+	0	ID=cds685;Parent=gene722;Dbxref=Genbank:WP_002209257.1;Name=WP_002209257.1;gbkey=CDS;product=30S ribosomal protein S15;protein_id=WP_002209257.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	776492	777934	.	+	.	ID=id104;gbkey=repeat_region
NC_004088.1	RefSeq	region	776493	777933	.	+	.	ID=id105;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	776548	777063	.	+	.	ID=gene723;Name=Y_RS03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03640;old_locus_tag=y0692
NC_004088.1	Protein Homology	CDS	776548	777063	.	+	0	ID=cds686;Parent=gene723;Dbxref=Genbank:WP_002209258.1;Name=WP_002209258.1;gbkey=CDS;product=transposase;protein_id=WP_002209258.1;transl_table=11
NC_004088.1	RefSeq	gene	777117	777902	.	+	.	ID=gene724;Name=Y_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03645;old_locus_tag=y0693
NC_004088.1	Protein Homology	CDS	777117	777902	.	+	0	ID=cds687;Parent=gene724;Dbxref=Genbank:WP_002208932.1;Name=WP_002208932.1;gbkey=CDS;product=integrase;protein_id=WP_002208932.1;transl_table=11
NC_004088.1	RefSeq	gene	778169	780286	.	+	.	ID=gene725;Name=Y_RS03650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03650;old_locus_tag=y0694
NC_004088.1	Protein Homology	CDS	778169	780286	.	+	0	ID=cds688;Parent=gene725;Dbxref=Genbank:WP_002209259.1;Name=WP_002209259.1;gbkey=CDS;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_002209259.1;transl_table=11
NC_004088.1	RefSeq	gene	780411	781295	.	+	.	ID=gene726;Name=Y_RS03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03655;old_locus_tag=y0695
NC_004088.1	Protein Homology	CDS	780411	781295	.	+	0	ID=cds689;Parent=gene726;Dbxref=Genbank:WP_002209260.1;Name=WP_002209260.1;Note=lipoprotein that appears to be involved in cell division%3B interacts with the periplasmic protease Prc and may be activated by protease processing;gbkey=CDS;product=lipoprotein NlpI;protein_id=WP_002209260.1;transl_table=11
NC_004088.1	RefSeq	gene	781482	783476	.	+	.	ID=gene727;Name=Y_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03660;old_locus_tag=y0696
NC_004088.1	Protein Homology	CDS	781482	783476	.	+	0	ID=cds690;Parent=gene727;Dbxref=Genbank:WP_002209261.1;Name=WP_002209261.1;Note=participates in the assembly of the large subunit of the ribosome%3B plays a key role in optimal cell growth at low temperature and is required for normal cell division;gbkey=CDS;product=DEAD/DEAH box family ATP-dependent RNA helicase;protein_id=WP_002209261.1;transl_table=11
NC_004088.1	RefSeq	gene	783496	783669	.	+	.	ID=gene728;Name=Y_RS03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03665;old_locus_tag=y0697
NC_004088.1	Protein Homology	CDS	783496	783669	.	+	0	ID=cds691;Parent=gene728;Dbxref=Genbank:WP_002209262.1;Name=WP_002209262.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209262.1;transl_table=11
NC_004088.1	RefSeq	gene	783712	784080	.	+	.	ID=gene729;Name=Y_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03670;old_locus_tag=y0698
NC_004088.1	Protein Homology	CDS	783712	784080	.	+	0	ID=cds692;Parent=gene729;Dbxref=Genbank:WP_002214818.1;Name=WP_002214818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214818.1;transl_table=11
NC_004088.1	RefSeq	gene	784104	784415	.	+	.	ID=gene730;Name=Y_RS03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03675;old_locus_tag=y0699
NC_004088.1	Protein Homology	CDS	784104	784415	.	+	0	ID=cds693;Parent=gene730;Dbxref=Genbank:WP_002209263.1;Name=WP_002209263.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209263.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	784446	784620	.	+	.	ID=id106;gbkey=repeat_region
NC_004088.1	RefSeq	gene	784670	785725	.	-	.	ID=gene731;Name=Y_RS03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03680;old_locus_tag=y0700
NC_004088.1	Protein Homology	CDS	784670	785725	.	-	0	ID=cds694;Parent=gene731;Dbxref=Genbank:WP_002214817.1;Name=WP_002214817.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214817.1;transl_table=11
NC_004088.1	RefSeq	gene	786233	787393	.	+	.	ID=gene732;Name=Y_RS03685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03685;old_locus_tag=y0702
NC_004088.1	Protein Homology	CDS	786233	787393	.	+	0	ID=cds695;Parent=gene732;Dbxref=Genbank:WP_002209266.1;Name=WP_002209266.1;gbkey=CDS;product=acriflavine resistance protein E;protein_id=WP_002209266.1;transl_table=11
NC_004088.1	RefSeq	gene	787397	790522	.	+	.	ID=gene733;Name=Y_RS03690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03690;old_locus_tag=y0703
NC_004088.1	Protein Homology	CDS	787397	790522	.	+	0	ID=cds696;Parent=gene733;Dbxref=Genbank:WP_002209267.1;Name=WP_002209267.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_002209267.1;transl_table=11
NC_004088.1	RefSeq	gene	790524	791930	.	+	.	ID=gene734;Name=Y_RS03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03695;old_locus_tag=y0704
NC_004088.1	Protein Homology	CDS	790524	791930	.	+	0	ID=cds697;Parent=gene734;Dbxref=Genbank:WP_002209268.1;Name=WP_002209268.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_002209268.1;transl_table=11
NC_004088.1	RefSeq	gene	792071	792949	.	-	.	ID=gene735;Name=Y_RS03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03700;old_locus_tag=y0705
NC_004088.1	Protein Homology	CDS	792071	792949	.	-	0	ID=cds698;Parent=gene735;Dbxref=Genbank:WP_002209269.1;Name=WP_002209269.1;gbkey=CDS;product=protease;protein_id=WP_002209269.1;transl_table=11
NC_004088.1	RefSeq	gene	792961	793956	.	-	.	ID=gene736;Name=Y_RS03705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03705;old_locus_tag=y0706
NC_004088.1	Protein Homology	CDS	792961	793956	.	-	0	ID=cds699;Parent=gene736;Dbxref=Genbank:WP_002209270.1;Name=WP_002209270.1;gbkey=CDS;product=protease;protein_id=WP_002209270.1;transl_table=11
NC_004088.1	RefSeq	gene	794066	794191	.	-	.	ID=gene737;Name=Y_RS03710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03710
NC_004088.1	Protein Homology	CDS	794066	794191	.	-	0	ID=cds700;Parent=gene737;Dbxref=Genbank:WP_002209271.1;Name=WP_002209271.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209271.1;transl_table=11
NC_004088.1	RefSeq	gene	794272	794793	.	+	.	ID=gene738;Name=Y_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03715;old_locus_tag=y0707
NC_004088.1	Protein Homology	CDS	794272	794793	.	+	0	ID=cds701;Parent=gene738;Dbxref=Genbank:WP_002209272.1;Name=WP_002209272.1;gbkey=CDS;product=SCP-2 sterol transfer family protein;protein_id=WP_002209272.1;transl_table=11
NC_004088.1	RefSeq	gene	794787	795293	.	+	.	ID=gene739;Name=Y_RS03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03720;old_locus_tag=y0708
NC_004088.1	Protein Homology	CDS	794787	795293	.	+	0	ID=cds702;Parent=gene739;Dbxref=Genbank:WP_002209273.1;Name=WP_002209273.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_002209273.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	795370	795501	.	+	.	ID=id107;gbkey=repeat_region
NC_004088.1	RefSeq	gene	795468	795755	.	-	.	ID=gene740;Name=Y_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03725;old_locus_tag=y0709
NC_004088.1	Protein Homology	CDS	795468	795755	.	-	0	ID=cds703;Parent=gene740;Dbxref=Genbank:WP_002209274.1;Name=WP_002209274.1;gbkey=CDS;product=nuclease;protein_id=WP_002209274.1;transl_table=11
NC_004088.1	RefSeq	gene	795986	798004	.	-	.	ID=gene741;Name=Y_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03730;old_locus_tag=y0710
NC_004088.1	Protein Homology	CDS	795986	798004	.	-	0	ID=cds704;Parent=gene741;Dbxref=Genbank:WP_002209275.1;Name=WP_002209275.1;gbkey=CDS;product=alginate lyase;protein_id=WP_002209275.1;transl_table=11
NC_004088.1	RefSeq	gene	798028	799251	.	-	.	ID=gene742;Name=Y_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03735;old_locus_tag=y0711
NC_004088.1	Protein Homology	CDS	798028	799251	.	-	0	ID=cds705;Parent=gene742;Dbxref=Genbank:WP_002209276.1;Name=WP_002209276.1;gbkey=CDS;product=alginate lyase;protein_id=WP_002209276.1;transl_table=11
NC_004088.1	RefSeq	gene	799812	801125	.	+	.	ID=gene743;Name=Y_RS03740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03740;old_locus_tag=y0712
NC_004088.1	Protein Homology	CDS	799812	801125	.	+	0	ID=cds706;Parent=gene743;Dbxref=Genbank:WP_002209277.1;Name=WP_002209277.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002209277.1;transl_table=11
NC_004088.1	RefSeq	gene	801133	802017	.	+	.	ID=gene744;Name=Y_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03745;old_locus_tag=y0713
NC_004088.1	Protein Homology	CDS	801133	802017	.	+	0	ID=cds707;Parent=gene744;Dbxref=Genbank:WP_002209278.1;Name=WP_002209278.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002209278.1;transl_table=11
NC_004088.1	RefSeq	gene	802036	802875	.	+	.	ID=gene745;Name=Y_RS03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03750;old_locus_tag=y0714
NC_004088.1	Protein Homology	CDS	802036	802875	.	+	0	ID=cds708;Parent=gene745;Dbxref=Genbank:WP_002209279.1;Name=WP_002209279.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002209279.1;transl_table=11
NC_004088.1	RefSeq	gene	802887	803981	.	+	.	ID=gene746;Name=Y_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03755;old_locus_tag=y0715
NC_004088.1	Protein Homology	CDS	802887	803981	.	+	0	ID=cds709;Parent=gene746;Dbxref=Genbank:WP_002209280.1;Name=WP_002209280.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002209280.1;transl_table=11
NC_004088.1	RefSeq	gene	803996	805162	.	+	.	ID=gene747;Name=Y_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03760;old_locus_tag=y0716
NC_004088.1	Protein Homology	CDS	803996	805162	.	+	0	ID=cds710;Parent=gene747;Dbxref=Genbank:WP_002209281.1;Name=WP_002209281.1;gbkey=CDS;product=alginate lyase;protein_id=WP_002209281.1;transl_table=11
NC_004088.1	RefSeq	gene	805261	805704	.	+	.	ID=gene748;Name=Y_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03765;old_locus_tag=y0717
NC_004088.1	Protein Homology	CDS	805261	805704	.	+	0	ID=cds711;Parent=gene748;Dbxref=Genbank:WP_002209282.1;Name=WP_002209282.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209282.1;transl_table=11
NC_004088.1	RefSeq	gene	805856	806494	.	+	.	ID=gene749;Name=Y_RS03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03770;old_locus_tag=y0718
NC_004088.1	Protein Homology	CDS	805856	806494	.	+	0	ID=cds712;Parent=gene749;Dbxref=Genbank:WP_002209283.1;Name=WP_002209283.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209283.1;transl_table=11
NC_004088.1	RefSeq	gene	806507	807259	.	-	.	ID=gene750;Name=phnP;gbkey=Gene;gene=phnP;gene_biotype=protein_coding;locus_tag=Y_RS03775;old_locus_tag=y0720
NC_004088.1	Protein Homology	CDS	806507	807259	.	-	0	ID=cds713;Parent=gene750;Dbxref=Genbank:WP_002209284.1;Name=WP_002209284.1;Note=required for the use of phosphonates and phosphite as phosphorus sources;gbkey=CDS;gene=phnP;product=phosphonate metabolism protein PhnP;protein_id=WP_002209284.1;transl_table=11
NC_004088.1	RefSeq	gene	807250	807831	.	-	.	ID=gene751;Name=Y_RS03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03780;old_locus_tag=y0721
NC_004088.1	Protein Homology	CDS	807250	807831	.	-	0	ID=cds714;Parent=gene751;Dbxref=Genbank:WP_002209285.1;Name=WP_002209285.1;gbkey=CDS;product=ribose 1%2C5-bisphosphate phosphokinase PhnN;protein_id=WP_002209285.1;transl_table=11
NC_004088.1	RefSeq	gene	807831	808967	.	-	.	ID=gene752;Name=Y_RS03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03785;old_locus_tag=y0722
NC_004088.1	Protein Homology	CDS	807831	808967	.	-	0	ID=cds715;Parent=gene752;Dbxref=Genbank:WP_002209286.1;Name=WP_002209286.1;gbkey=CDS;product=phosphonate metabolism protein PhnM;protein_id=WP_002209286.1;transl_table=11
NC_004088.1	RefSeq	gene	808964	809683	.	-	.	ID=gene753;Name=Y_RS03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03790;old_locus_tag=y0723
NC_004088.1	Protein Homology	CDS	808964	809683	.	-	0	ID=cds716;Parent=gene753;Dbxref=Genbank:WP_002209287.1;Name=WP_002209287.1;gbkey=CDS;product=phosphonate ABC transporter ATP-binding protein;protein_id=WP_002209287.1;transl_table=11
NC_004088.1	RefSeq	gene	810072	810863	.	-	.	ID=gene754;Name=phnK;gbkey=Gene;gene=phnK;gene_biotype=protein_coding;locus_tag=Y_RS03795;old_locus_tag=y0725
NC_004088.1	Protein Homology	CDS	810072	810863	.	-	0	ID=cds717;Parent=gene754;Dbxref=Genbank:WP_002209288.1;Name=WP_002209288.1;gbkey=CDS;gene=phnK;product=phosphonate C-P lyase;protein_id=WP_002209288.1;transl_table=11
NC_004088.1	RefSeq	gene	810863	811744	.	-	.	ID=gene755;Name=Y_RS03800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03800;old_locus_tag=y0726
NC_004088.1	Protein Homology	CDS	810863	811744	.	-	0	ID=cds718;Parent=gene755;Dbxref=Genbank:WP_002209289.1;Name=WP_002209289.1;Note=required for use of phosphonate and phosphite;gbkey=CDS;product=carbon-phosphorus lyase complex subunit PhnJ;protein_id=WP_002209289.1;transl_table=11
NC_004088.1	RefSeq	gene	811737	812915	.	-	.	ID=gene756;Name=Y_RS03805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03805;old_locus_tag=y0727
NC_004088.1	Protein Homology	CDS	811737	812915	.	-	0	ID=cds719;Parent=gene756;Dbxref=Genbank:WP_002209290.1;Name=WP_002209290.1;Note=required for the use of phosphonate and phosphite;gbkey=CDS;product=carbon-phosphorus lyase complex subunit PhnI;protein_id=WP_002209290.1;transl_table=11
NC_004088.1	RefSeq	gene	812915	813541	.	-	.	ID=gene757;Name=phnH;gbkey=Gene;gene=phnH;gene_biotype=protein_coding;locus_tag=Y_RS03810;old_locus_tag=y0728
NC_004088.1	Protein Homology	CDS	812915	813541	.	-	0	ID=cds720;Parent=gene757;Dbxref=Genbank:WP_002209291.1;Name=WP_002209291.1;gbkey=CDS;gene=phnH;product=phosphonate C-P lyase system protein PhnH;protein_id=WP_002209291.1;transl_table=11
NC_004088.1	RefSeq	gene	813541	814017	.	-	.	ID=gene758;Name=Y_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03815;old_locus_tag=y0729
NC_004088.1	Protein Homology	CDS	813541	814017	.	-	0	ID=cds721;Parent=gene758;Dbxref=Genbank:WP_002209292.1;Name=WP_002209292.1;gbkey=CDS;product=phosphonate metabolism protein PhnG;protein_id=WP_002209292.1;transl_table=11
NC_004088.1	RefSeq	gene	814018	814743	.	-	.	ID=gene759;Name=Y_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03820;old_locus_tag=y0730
NC_004088.1	Protein Homology	CDS	814018	814743	.	-	0	ID=cds722;Parent=gene759;Dbxref=Genbank:WP_002209293.1;Name=WP_002209293.1;Note=may be involved in phosphonate uptake and biodegradation;gbkey=CDS;product=phosphonate metabolism transcriptional regulator PhnF;protein_id=WP_002209293.1;transl_table=11
NC_004088.1	RefSeq	gene	815071	815535	.	-	.	ID=gene760;Name=Y_RS03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03825;old_locus_tag=y0732
NC_004088.1	Protein Homology	CDS	815071	815535	.	-	0	ID=cds723;Parent=gene760;Dbxref=Genbank:WP_025470743.1;Name=WP_025470743.1;Note=activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions;gbkey=CDS;product=anaerobic ribonucleoside-triphosphate reductase activating protein;protein_id=WP_025470743.1;transl_table=11
NC_004088.1	RefSeq	gene	815712	817850	.	-	.	ID=gene761;Name=Y_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03830;old_locus_tag=y0733
NC_004088.1	Protein Homology	CDS	815712	817850	.	-	0	ID=cds724;Parent=gene761;Dbxref=Genbank:WP_002209296.1;Name=WP_002209296.1;Note=Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates;gbkey=CDS;product=ribonucleoside triphosphate reductase;protein_id=WP_002209296.1;transl_table=11
NC_004088.1	RefSeq	gene	818284	819000	.	-	.	ID=gene762;Name=Y_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03835;old_locus_tag=y0734
NC_004088.1	Protein Homology	CDS	818284	819000	.	-	0	ID=cds725;Parent=gene762;Dbxref=Genbank:WP_002209297.1;Name=WP_002209297.1;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_002209297.1;transl_table=11
NC_004088.1	RefSeq	gene	818987	819865	.	-	.	ID=gene763;Name=Y_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03840;old_locus_tag=y0735
NC_004088.1	Protein Homology	CDS	818987	819865	.	-	0	ID=cds726;Parent=gene763;Dbxref=Genbank:WP_002209298.1;Name=WP_002209298.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002209298.1;transl_table=11
NC_004088.1	RefSeq	gene	819858	820694	.	-	.	ID=gene764;Name=Y_RS03845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03845;old_locus_tag=y0736
NC_004088.1	Protein Homology	CDS	819858	820694	.	-	0	ID=cds727;Parent=gene764;Dbxref=Genbank:WP_002209299.1;Name=WP_002209299.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_002209299.1;transl_table=11
NC_004088.1	RefSeq	gene	820713	821762	.	-	.	ID=gene765;Name=Y_RS03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03850;old_locus_tag=y0737
NC_004088.1	Protein Homology	CDS	820713	821762	.	-	0	ID=cds728;Parent=gene765;Dbxref=Genbank:WP_002209300.1;Name=WP_002209300.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_002209300.1;transl_table=11
NC_004088.1	RefSeq	gene	821858	823425	.	-	.	ID=gene766;Name=Y_RS03855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS03855;pseudo=true
NC_004088.1	Protein Homology	CDS	821858	823425	.	-	0	ID=cds729;Parent=gene766;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ABC transporter substrate-binding protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	823621	823790	.	+	.	ID=id108;gbkey=repeat_region
NC_004088.1	RefSeq	gene	824064	824522	.	+	.	ID=gene767;Name=Y_RS03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03860;old_locus_tag=y0739
NC_004088.1	Protein Homology	CDS	824064	824522	.	+	0	ID=cds730;Parent=gene767;Dbxref=Genbank:WP_002209301.1;Name=WP_002209301.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209301.1;transl_table=11
NC_004088.1	RefSeq	gene	824829	825836	.	-	.	ID=gene768;Name=Y_RS03865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03865;old_locus_tag=y0740
NC_004088.1	Protein Homology	CDS	824829	825836	.	-	0	ID=cds731;Parent=gene768;Dbxref=Genbank:WP_002209302.1;Name=WP_002209302.1;Note=catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway;gbkey=CDS;product=ornithine carbamoyltransferase;protein_id=WP_002209302.1;transl_table=11
NC_004088.1	RefSeq	gene	826048	826479	.	+	.	ID=gene769;Name=Y_RS03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03870;old_locus_tag=y0741
NC_004088.1	Protein Homology	CDS	826048	826479	.	+	0	ID=cds732;Parent=gene769;Dbxref=Genbank:WP_002209303.1;Name=WP_002209303.1;gbkey=CDS;product=RNase E inhibitor protein;protein_id=WP_002209303.1;transl_table=11
NC_004088.1	RefSeq	gene	826689	827192	.	-	.	ID=gene770;Name=Y_RS03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03875;old_locus_tag=y0742
NC_004088.1	Protein Homology	CDS	826689	827192	.	-	0	ID=cds733;Parent=gene770;Dbxref=Genbank:WP_002223170.1;Name=WP_002223170.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_002223170.1;transl_table=11
NC_004088.1	RefSeq	gene	827335	830232	.	-	.	ID=gene771;Name=Y_RS03880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03880;old_locus_tag=y0743
NC_004088.1	Protein Homology	CDS	827335	830232	.	-	0	ID=cds734;Parent=gene771;Dbxref=Genbank:WP_002209307.1;Name=WP_002209307.1;gbkey=CDS;product=valine--tRNA ligase;protein_id=WP_002209307.1;transl_table=11
NC_004088.1	RefSeq	gene	830245	830694	.	-	.	ID=gene772;Name=Y_RS03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03885;old_locus_tag=y0745
NC_004088.1	Protein Homology	CDS	830245	830694	.	-	0	ID=cds735;Parent=gene772;Dbxref=Genbank:WP_002209309.1;Name=WP_002209309.1;Note=binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB;gbkey=CDS;product=DNA polymerase III subunit chi;protein_id=WP_002209309.1;transl_table=11
NC_004088.1	RefSeq	gene	830845	832356	.	-	.	ID=gene773;Name=Y_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03890;old_locus_tag=y0746
NC_004088.1	Protein Homology	CDS	830845	832356	.	-	0	ID=cds736;Parent=gene773;Dbxref=Genbank:WP_002209310.1;Name=WP_002209310.1;Note=catalyzes the removal of N-terminal amino acids preferably from various peptides%3B a cyteinylglycinase%2C transcription regulator and site-specific recombination factor;gbkey=CDS;product=cytosol aminopeptidase;protein_id=WP_002209310.1;transl_table=11
NC_004088.1	RefSeq	gene	832636	833730	.	+	.	ID=gene774;Name=Y_RS03895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03895;old_locus_tag=y0747
NC_004088.1	Protein Homology	CDS	832636	833730	.	+	0	ID=cds737;Parent=gene774;Dbxref=Genbank:WP_002209311.1;Name=WP_002209311.1;Note=with LptBGC is involved in lipopolysaccharide export;gbkey=CDS;product=LPS export ABC transporter permease LptF;protein_id=WP_002209311.1;transl_table=11
NC_004088.1	RefSeq	gene	833730	834806	.	+	.	ID=gene775;Name=Y_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03900;old_locus_tag=y0748
NC_004088.1	Protein Homology	CDS	833730	834806	.	+	0	ID=cds738;Parent=gene775;Dbxref=Genbank:WP_002223173.1;Name=WP_002223173.1;Note=with LptABCF is involved in the transport of lipopolysaccharides;gbkey=CDS;product=LPS export ABC transporter permease LptG;protein_id=WP_002223173.1;transl_table=11
NC_004088.1	RefSeq	gene	834911	834995	.	+	.	ID=gene776;Name=Y_RS03905;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS03905;old_locus_tag=yt022
NC_004088.1	tRNAscan-SE	tRNA	834911	834995	.	+	.	ID=rna36;Parent=gene776;anticodon=(pos:834945..834947);gbkey=tRNA;product=tRNA-Leu
NC_004088.1	tRNAscan-SE	exon	834911	834995	.	+	.	ID=id109;Parent=rna36;anticodon=(pos:834945..834947);gbkey=tRNA;product=tRNA-Leu
NC_004088.1	RefSeq	repeat_region	834990	835201	.	+	.	ID=id110;gbkey=repeat_region
NC_004088.1	RefSeq	gene	835194	836453	.	+	.	ID=gene777;Name=Y_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03910;old_locus_tag=y0749
NC_004088.1	Protein Homology	CDS	835194	836453	.	+	0	ID=cds739;Parent=gene777;Dbxref=Genbank:WP_002209313.1;Name=WP_002209313.1;gbkey=CDS;product=integrase;protein_id=WP_002209313.1;transl_table=11
NC_004088.1	RefSeq	gene	836607	838517	.	+	.	ID=gene778;Name=Y_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03915;old_locus_tag=y0750
NC_004088.1	Protein Homology	CDS	836607	838517	.	+	0	ID=cds740;Parent=gene778;Dbxref=Genbank:WP_002209314.1;Name=WP_002209314.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209314.1;transl_table=11
NC_004088.1	RefSeq	gene	838510	839619	.	+	.	ID=gene779;Name=Y_RS03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03920;old_locus_tag=y0751
NC_004088.1	Protein Homology	CDS	838510	839619	.	+	0	ID=cds741;Parent=gene779;Dbxref=Genbank:WP_002209315.1;Name=WP_002209315.1;gbkey=CDS;product=histidine kinase;protein_id=WP_002209315.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	839602	842150	.	+	.	ID=id111;gbkey=repeat_region
NC_004088.1	RefSeq	region	839604	841557	.	-	.	ID=id112;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	839670	840449	.	-	.	ID=gene780;Name=Y_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03925;old_locus_tag=y0752
NC_004088.1	Protein Homology	CDS	839670	840449	.	-	0	ID=cds742;Parent=gene780;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	840449	841471	.	-	.	ID=gene781;Name=Y_RS03930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03930;old_locus_tag=y0753
NC_004088.1	Protein Homology	CDS	840449	841471	.	-	0	ID=cds743;Parent=gene781;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	841528	842040	.	+	.	ID=gene782;Name=Y_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03935;old_locus_tag=y0754
NC_004088.1	Protein Homology	CDS	841528	842040	.	+	0	ID=cds744;Parent=gene782;Dbxref=Genbank:WP_002209316.1;Name=WP_002209316.1;gbkey=CDS;product=transposase;protein_id=WP_002209316.1;transl_table=11
NC_004088.1	RefSeq	region	841556	842146	.	+	.	ID=id113;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	842230	842436	.	-	.	ID=gene783;Name=Y_RS03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03940;old_locus_tag=y0755
NC_004088.1	Protein Homology	CDS	842230	842436	.	-	0	ID=cds745;Parent=gene783;Dbxref=Genbank:WP_002209317.1;Name=WP_002209317.1;Note=inhibits supercoiling by DNA gyrase by binding to the GyrB subunit;gbkey=CDS;product=DNA gyrase inhibitor YacG;protein_id=WP_002209317.1;transl_table=11
NC_004088.1	RefSeq	gene	842622	843374	.	-	.	ID=gene784;Name=Y_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03945;old_locus_tag=y0756
NC_004088.1	Protein Homology	CDS	842622	843374	.	-	0	ID=cds746;Parent=gene784;Dbxref=Genbank:WP_002209318.1;Name=WP_002209318.1;gbkey=CDS;product=cell division protein ZapD;protein_id=WP_002209318.1;transl_table=11
NC_004088.1	RefSeq	gene	843371	843991	.	-	.	ID=gene785;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=Y_RS03950;old_locus_tag=y0757
NC_004088.1	Protein Homology	CDS	843371	843991	.	-	0	ID=cds747;Parent=gene785;Dbxref=Genbank:WP_002209319.1;Name=WP_002209319.1;Note=catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A%3B involved in coenzyme A biosynthesis;gbkey=CDS;gene=coaE;product=dephospho-CoA kinase;protein_id=WP_002209319.1;transl_table=11
NC_004088.1	RefSeq	gene	844001	844201	.	-	.	ID=gene786;Name=Y_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03955
NC_004088.1	Protein Homology	CDS	844001	844201	.	-	0	ID=cds748;Parent=gene786;Dbxref=Genbank:WP_002354912.1;Name=WP_002354912.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002354912.1;transl_table=11
NC_004088.1	RefSeq	gene	844287	845330	.	+	.	ID=gene787;Name=Y_RS03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03960;old_locus_tag=y0758
NC_004088.1	Protein Homology	CDS	844287	845330	.	+	0	ID=cds749;Parent=gene787;Dbxref=Genbank:WP_002232067.1;Name=WP_002232067.1;Note=catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate;gbkey=CDS;product=GMP reductase;protein_id=WP_002232067.1;transl_table=11
NC_004088.1	RefSeq	gene	845829	847028	.	-	.	ID=gene788;Name=Y_RS03965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03965;old_locus_tag=y0759
NC_004088.1	Protein Homology	CDS	845829	847028	.	-	0	ID=cds750;Parent=gene788;Dbxref=Genbank:WP_002209321.1;Name=WP_002209321.1;gbkey=CDS;product=type II secretion protein F;protein_id=WP_002209321.1;transl_table=11
NC_004088.1	RefSeq	gene	847025	848563	.	-	.	ID=gene789;Name=Y_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03970;old_locus_tag=y0760
NC_004088.1	Protein Homology	CDS	847025	848563	.	-	0	ID=cds751;Parent=gene789;Dbxref=Genbank:WP_002216083.1;Name=WP_002216083.1;gbkey=CDS;product=transporter HofB;protein_id=WP_002216083.1;transl_table=11
NC_004088.1	RefSeq	gene	848556	849020	.	-	.	ID=gene790;Name=Y_RS03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03975;old_locus_tag=y0761
NC_004088.1	Protein Homology	CDS	848556	849020	.	-	0	ID=cds752;Parent=gene790;Dbxref=Genbank:WP_002209323.1;Name=WP_002209323.1;gbkey=CDS;product=major pilin subunit;protein_id=WP_002209323.1;transl_table=11
NC_004088.1	RefSeq	gene	849223	850131	.	-	.	ID=gene791;Name=Y_RS03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03980;old_locus_tag=y0762
NC_004088.1	Protein Homology	CDS	849223	850131	.	-	0	ID=cds753;Parent=gene791;Dbxref=Genbank:WP_002209324.1;Name=WP_002209324.1;Note=catalyzes the formation of pyridine-2%2C3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide;gbkey=CDS;product=nicotinate-nucleotide pyrophosphorylase;protein_id=WP_002209324.1;transl_table=11
NC_004088.1	RefSeq	gene	850244	850795	.	+	.	ID=gene792;Name=Y_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03985;old_locus_tag=y0763
NC_004088.1	Protein Homology	CDS	850244	850795	.	+	0	ID=cds754;Parent=gene792;Dbxref=Genbank:WP_002209325.1;Name=WP_002209325.1;gbkey=CDS;product=N-acetyl-anhydromuranmyl-L-alanine amidase;protein_id=WP_002209325.1;transl_table=11
NC_004088.1	RefSeq	gene	851085	851939	.	+	.	ID=gene793;Name=Y_RS03990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03990;old_locus_tag=y0764
NC_004088.1	Protein Homology	CDS	851085	851939	.	+	0	ID=cds755;Parent=gene793;Dbxref=Genbank:WP_002209326.1;Name=WP_002209326.1;Note=involved in regulation of beta-lactamase%3B putative signaling protein;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209326.1;transl_table=11
NC_004088.1	RefSeq	gene	852372	853769	.	-	.	ID=gene794;Name=Y_RS03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS03995;old_locus_tag=y0765
NC_004088.1	Protein Homology	CDS	852372	853769	.	-	0	ID=cds756;Parent=gene794;Dbxref=Genbank:WP_002209327.1;Name=WP_002209327.1;gbkey=CDS;product=aromatic amino acid transporter;protein_id=WP_002209327.1;transl_table=11
NC_004088.1	RefSeq	gene	854632	855396	.	+	.	ID=gene795;Name=pdhR;gbkey=Gene;gene=pdhR;gene_biotype=protein_coding;locus_tag=Y_RS04000;old_locus_tag=y0766
NC_004088.1	Protein Homology	CDS	854632	855396	.	+	0	ID=cds757;Parent=gene795;Dbxref=Genbank:WP_002216080.1;Name=WP_002216080.1;Note=activates lctPRD operon%3B autoregulates itself through repression of pdhR-aceEF-lpdA operon%3B regulates pyruvate dehydrogenase complex;gbkey=CDS;gene=pdhR;product=transcriptional regulator;protein_id=WP_002216080.1;transl_table=11
NC_004088.1	RefSeq	gene	855592	858255	.	+	.	ID=gene796;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=Y_RS04005;old_locus_tag=y0767
NC_004088.1	Protein Homology	CDS	855592	858255	.	+	0	ID=cds758;Parent=gene796;Dbxref=Genbank:WP_002209329.1;Name=WP_002209329.1;Note=E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC;gbkey=CDS;gene=aceE;product=pyruvate dehydrogenase;protein_id=WP_002209329.1;transl_table=11
NC_004088.1	RefSeq	gene	858269	859798	.	+	.	ID=gene797;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=Y_RS04010;old_locus_tag=y0768
NC_004088.1	Protein Homology	CDS	858269	859798	.	+	0	ID=cds759;Parent=gene797;Dbxref=Genbank:WP_002209330.1;Name=WP_002209330.1;Note=E2 component of pyruvate dehydrogenase multienzyme complex%3B in Escherichia coli AceF contains three N-terminal lipoyl domains;gbkey=CDS;gene=aceF;product=dihydrolipoamide acetyltransferase;protein_id=WP_002209330.1;transl_table=11
NC_004088.1	RefSeq	gene	860104	861528	.	+	.	ID=gene798;Name=Y_RS04015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04015;old_locus_tag=y0769
NC_004088.1	Protein Homology	CDS	860104	861528	.	+	0	ID=cds760;Parent=gene798;Dbxref=Genbank:WP_002209332.1;Name=WP_002209332.1;Note=E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide;gbkey=CDS;product=dihydrolipoamide dehydrogenase;protein_id=WP_002209332.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	861619	862341	.	+	.	ID=id114;gbkey=repeat_region
NC_004088.1	RefSeq	region	861626	862335	.	+	.	ID=id115;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	861626	861781	.	+	.	ID=gene799;Name=Y_RS04020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04020
NC_004088.1	Protein Homology	CDS	861626	861781	.	+	0	ID=cds761;Parent=gene799;Dbxref=Genbank:WP_002213757.1;Name=WP_002213757.1;gbkey=CDS;product=invasin;protein_id=WP_002213757.1;transl_table=11
NC_004088.1	RefSeq	gene	861771	862229	.	+	.	ID=gene800;Name=Y_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04025;old_locus_tag=y0770
NC_004088.1	Protein Homology	CDS	861771	862229	.	+	0	ID=cds762;Parent=gene800;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	862799	865396	.	+	.	ID=gene801;Name=Y_RS04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04030;old_locus_tag=y0771
NC_004088.1	Protein Homology	CDS	862799	865396	.	+	0	ID=cds763;Parent=gene801;Dbxref=Genbank:WP_002209333.1;Name=WP_002209333.1;Note=catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate;gbkey=CDS;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_002209333.1;transl_table=11
NC_004088.1	RefSeq	gene	865695	866054	.	+	.	ID=gene802;Name=Y_RS04035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04035;old_locus_tag=y0772
NC_004088.1	Protein Homology	CDS	865695	866054	.	+	0	ID=cds764;Parent=gene802;Dbxref=Genbank:WP_002209334.1;Name=WP_002209334.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209334.1;transl_table=11
NC_004088.1	RefSeq	gene	866165	867073	.	-	.	ID=gene803;Name=Y_RS04040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04040;old_locus_tag=y0773
NC_004088.1	Protein Homology	CDS	866165	867073	.	-	0	ID=cds765;Parent=gene803;Dbxref=Genbank:WP_002209335.1;Name=WP_002209335.1;gbkey=CDS;product=aromatic amino acid exporter;protein_id=WP_002209335.1;transl_table=11
NC_004088.1	RefSeq	gene	867511	868305	.	-	.	ID=gene804;Name=Y_RS04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04045;old_locus_tag=y0774
NC_004088.1	Protein Homology	CDS	867511	868305	.	-	0	ID=cds766;Parent=gene804;Dbxref=Genbank:WP_002209337.1;Name=WP_002209337.1;Note=S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine;gbkey=CDS;product=S-adenosylmethionine decarboxylase proenzyme;protein_id=WP_002209337.1;transl_table=11
NC_004088.1	RefSeq	gene	868383	869273	.	-	.	ID=gene805;Name=Y_RS04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04050;old_locus_tag=y0775
NC_004088.1	Protein Homology	CDS	868383	869273	.	-	0	ID=cds767;Parent=gene805;Dbxref=Genbank:WP_002209338.1;Name=WP_002209338.1;gbkey=CDS;product=polyamine aminopropyltransferase;protein_id=WP_002209338.1;transl_table=11
NC_004088.1	RefSeq	gene	869390	869737	.	-	.	ID=gene806;Name=Y_RS04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04055;old_locus_tag=y0776
NC_004088.1	Protein Homology	CDS	869390	869737	.	-	0	ID=cds768;Parent=gene806;Dbxref=Genbank:WP_002228215.1;Name=WP_002228215.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228215.1;transl_table=11
NC_004088.1	RefSeq	gene	870054	871655	.	+	.	ID=gene807;Name=Y_RS04060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04060;old_locus_tag=y0777
NC_004088.1	Protein Homology	CDS	870054	871655	.	+	0	ID=cds769;Parent=gene807;Dbxref=Genbank:WP_002209340.1;Name=WP_002209340.1;Note=laccase%3B copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification;gbkey=CDS;product=blue copper oxidase CueO;protein_id=WP_002209340.1;transl_table=11
NC_004088.1	RefSeq	gene	871875	872411	.	+	.	ID=gene808;Name=Y_RS04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04065;old_locus_tag=y0778
NC_004088.1	Protein Homology	CDS	871875	872411	.	+	0	ID=cds770;Parent=gene808;Dbxref=Genbank:WP_002228315.1;Name=WP_002228315.1;Note=catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate;gbkey=CDS;product=hypoxanthine phosphoribosyltransferase;protein_id=WP_002228315.1;transl_table=11
NC_004088.1	RefSeq	gene	872565	873227	.	-	.	ID=gene809;Name=Y_RS04070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04070
NC_004088.1	Protein Homology	CDS	872565	873227	.	-	0	ID=cds771;Parent=gene809;Dbxref=Genbank:WP_002209342.1;Name=WP_002209342.1;Note=catalyzes the interconversion of bicarbonate and carbon dioxide;gbkey=CDS;product=carbonic anhydrase;protein_id=WP_002209342.1;transl_table=11
NC_004088.1	RefSeq	gene	873463	874389	.	+	.	ID=gene810;Name=Y_RS04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04075;old_locus_tag=y0780
NC_004088.1	Protein Homology	CDS	873463	874389	.	+	0	ID=cds772;Parent=gene810;Dbxref=Genbank:WP_002209343.1;Name=WP_002209343.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002209343.1;transl_table=11
NC_004088.1	RefSeq	gene	874386	875156	.	+	.	ID=gene811;Name=Y_RS04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04080;old_locus_tag=y0781
NC_004088.1	Protein Homology	CDS	874386	875156	.	+	0	ID=cds773;Parent=gene811;Dbxref=Genbank:WP_002209344.1;Name=WP_002209344.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209344.1;transl_table=11
NC_004088.1	RefSeq	gene	875363	876677	.	+	.	ID=gene812;Name=Y_RS04085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS04085;pseudo=true
NC_004088.1	Protein Homology	CDS	875363	876677	.	+	0	ID=cds774;Parent=gene812;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	876826	877206	.	-	.	ID=gene813;Name=Y_RS04090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04090;old_locus_tag=y0784
NC_004088.1	Protein Homology	CDS	876826	877206	.	-	0	ID=cds775;Parent=gene813;Dbxref=Genbank:WP_002209347.1;Name=WP_002209347.1;gbkey=CDS;product=aspartate 1-decarboxylase;protein_id=WP_002209347.1;transl_table=11
NC_004088.1	RefSeq	gene	877617	878471	.	-	.	ID=gene814;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=Y_RS04095;old_locus_tag=y0785
NC_004088.1	Protein Homology	CDS	877617	878471	.	-	0	ID=cds776;Parent=gene814;Dbxref=Genbank:WP_002209348.1;Name=WP_002209348.1;Note=catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine;gbkey=CDS;gene=panC;product=pantothenate synthetase;protein_id=WP_002209348.1;transl_table=11
NC_004088.1	RefSeq	gene	878559	879356	.	-	.	ID=gene815;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=Y_RS04100;old_locus_tag=y0786
NC_004088.1	Protein Homology	CDS	878559	879356	.	-	0	ID=cds777;Parent=gene815;Dbxref=Genbank:WP_002209349.1;Name=WP_002209349.1;Note=catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5%2C10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate;gbkey=CDS;gene=panB;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_002209349.1;transl_table=11
NC_004088.1	RefSeq	gene	879625	880104	.	-	.	ID=gene816;Name=Y_RS04105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04105;old_locus_tag=y0787
NC_004088.1	Protein Homology	CDS	879625	880104	.	-	0	ID=cds778;Parent=gene816;Dbxref=Genbank:WP_002209351.1;Name=WP_002209351.1;gbkey=CDS;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase;protein_id=WP_002209351.1;transl_table=11
NC_004088.1	RefSeq	gene	880112	881533	.	-	.	ID=gene817;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=Y_RS04110;old_locus_tag=y0788
NC_004088.1	Protein Homology	CDS	880112	881533	.	-	0	ID=cds779;Parent=gene817;Dbxref=Genbank:WP_032465644.1;Name=WP_032465644.1;Note=Polymerase that creates the 3' poly(A) tail found in some mRNA's;gbkey=CDS;gene=pcnB;product=poly(A) polymerase I;protein_id=WP_032465644.1;transl_table=11
NC_004088.1	RefSeq	gene	881676	882641	.	-	.	ID=gene818;Name=Y_RS04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04115;old_locus_tag=y0789
NC_004088.1	Protein Homology	CDS	881676	882641	.	-	0	ID=cds780;Parent=gene818;Dbxref=Genbank:WP_002228220.1;Name=WP_002228220.1;gbkey=CDS;product=glutamyl-Q tRNA(Asp) ligase;protein_id=WP_002228220.1;transl_table=11
NC_004088.1	RefSeq	gene	882921	883376	.	-	.	ID=gene819;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=Y_RS04120;old_locus_tag=y0790
NC_004088.1	Protein Homology	CDS	882921	883376	.	-	0	ID=cds781;Parent=gene819;Dbxref=Genbank:WP_002209354.1;Name=WP_002209354.1;gbkey=CDS;gene=dksA;product=transcriptional regulator;protein_id=WP_002209354.1;transl_table=11
NC_004088.1	RefSeq	gene	883546	884283	.	-	.	ID=gene820;Name=Y_RS04125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04125;old_locus_tag=y0792
NC_004088.1	Protein Homology	CDS	883546	884283	.	-	0	ID=cds782;Parent=gene820;Dbxref=Genbank:WP_002228221.1;Name=WP_002228221.1;gbkey=CDS;product=sugar fermentation stimulation protein homolog;protein_id=WP_002228221.1;transl_table=11
NC_004088.1	RefSeq	gene	884396	884971	.	-	.	ID=gene821;Name=Y_RS04130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04130;old_locus_tag=y0793
NC_004088.1	Protein Homology	CDS	884396	884971	.	-	0	ID=cds783;Parent=gene821;Dbxref=Genbank:WP_002209356.1;Name=WP_002209356.1;gbkey=CDS;product=2'-5' RNA ligase;protein_id=WP_002209356.1;transl_table=11
NC_004088.1	RefSeq	gene	885012	887573	.	+	.	ID=gene822;Name=Y_RS04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04135;old_locus_tag=y0794
NC_004088.1	Protein Homology	CDS	885012	887573	.	+	0	ID=cds784;Parent=gene822;Dbxref=Genbank:WP_002222096.1;Name=WP_002222096.1;Note=similar in sequence to the ATP-dependent RNA helicase HrpA;gbkey=CDS;product=RNA helicase;protein_id=WP_002222096.1;transl_table=11
NC_004088.1	RefSeq	gene	887654	890155	.	+	.	ID=gene823;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;gene_synonym=ponB;locus_tag=Y_RS04140;old_locus_tag=y0795
NC_004088.1	Protein Homology	CDS	887654	890155	.	+	0	ID=cds785;Parent=gene823;Dbxref=Genbank:WP_050751002.1;Name=WP_050751002.1;Note=penicillin-binding protein 1b%3B contains transglycosylase and transpeptidase activity%3B major enzyme for peptidoglycan biosynthesis in Escherichia coli%3B transmembrane protein%3B forms dimers%3B three variants%2C one of which may be a degradation product%2C while the other appears to result from an alternative initiation site%2C are found within the cell;gbkey=CDS;gene=mrcB;product=bifunctional glycosyl transferase/transpeptidase;protein_id=WP_050751002.1;transl_table=11
NC_004088.1	RefSeq	gene	890477	891271	.	+	.	ID=gene824;Name=Y_RS04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04145;old_locus_tag=y0796
NC_004088.1	Protein Homology	CDS	890477	891271	.	+	0	ID=cds786;Parent=gene824;Dbxref=Genbank:WP_002209359.1;Name=WP_002209359.1;Note=part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter;gbkey=CDS;product=iron-hydroxamate transporter ATP-binding protein;protein_id=WP_002209359.1;transl_table=11
NC_004088.1	RefSeq	gene	891448	892359	.	+	.	ID=gene825;Name=Y_RS04150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04150;old_locus_tag=y0797
NC_004088.1	Protein Homology	CDS	891448	892359	.	+	0	ID=cds787;Parent=gene825;Dbxref=Genbank:WP_002209360.1;Name=WP_002209360.1;gbkey=CDS;product=iron-hydroxamate transporter substrate-binding subunit;protein_id=WP_002209360.1;transl_table=11
NC_004088.1	RefSeq	gene	892356	894353	.	+	.	ID=gene826;Name=Y_RS04155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04155;old_locus_tag=y0798
NC_004088.1	Protein Homology	CDS	892356	894353	.	+	0	ID=cds788;Parent=gene826;Dbxref=Genbank:WP_002209361.1;Name=WP_002209361.1;gbkey=CDS;product=iron-hydroxamate transporter permease subunit;protein_id=WP_002209361.1;transl_table=11
NC_004088.1	RefSeq	gene	894727	896007	.	-	.	ID=gene827;Name=Y_RS04160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04160;old_locus_tag=y0799
NC_004088.1	Protein Homology	CDS	894727	896007	.	-	0	ID=cds789;Parent=gene827;Dbxref=Genbank:WP_002209362.1;Name=WP_002209362.1;Note=Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway;gbkey=CDS;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_002209362.1;transl_table=11
NC_004088.1	RefSeq	gene	896388	897830	.	+	.	ID=gene828;Name=Y_RS04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04165;old_locus_tag=y0800
NC_004088.1	Protein Homology	CDS	896388	897830	.	+	0	ID=cds790;Parent=gene828;Dbxref=Genbank:WP_011055305.1;Name=WP_011055305.1;gbkey=CDS;product=chloride channel protein;protein_id=WP_011055305.1;transl_table=11
NC_004088.1	RefSeq	gene	897961	898305	.	+	.	ID=gene829;Name=Y_RS04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04170;old_locus_tag=y0801
NC_004088.1	Protein Homology	CDS	897961	898305	.	+	0	ID=cds791;Parent=gene829;Dbxref=Genbank:WP_002209365.1;Name=WP_002209365.1;Note=essential respiratory protein A%3B may be involved in the transfer of iron-sulfur clusters%3B essential for growth using oxygen or alternate electron acceptors;gbkey=CDS;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_002209365.1;transl_table=11
NC_004088.1	RefSeq	gene	898607	899221	.	-	.	ID=gene830;Name=Y_RS04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04175;old_locus_tag=y0803
NC_004088.1	Protein Homology	CDS	898607	899221	.	-	0	ID=cds792;Parent=gene830;Dbxref=Genbank:WP_002209366.1;Name=WP_002209366.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209366.1;transl_table=11
NC_004088.1	RefSeq	gene	899221	900063	.	-	.	ID=gene831;Name=Y_RS04180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04180;old_locus_tag=y0804
NC_004088.1	Protein Homology	CDS	899221	900063	.	-	0	ID=cds793;Parent=gene831;Dbxref=Genbank:WP_002222100.1;Name=WP_002222100.1;gbkey=CDS;product=vitamin B12-binding protein;protein_id=WP_002222100.1;transl_table=11
NC_004088.1	RefSeq	gene	900063	900764	.	-	.	ID=gene832;Name=Y_RS04185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04185;old_locus_tag=y0805
NC_004088.1	Protein Homology	CDS	900063	900764	.	-	0	ID=cds794;Parent=gene832;Dbxref=Genbank:WP_002209368.1;Name=WP_002209368.1;Note=enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine;gbkey=CDS;product=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase;protein_id=WP_002209368.1;transl_table=11
NC_004088.1	RefSeq	gene	901041	902561	.	+	.	ID=gene833;Name=Y_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04190;old_locus_tag=y0806
NC_004088.1	Protein Homology	CDS	901041	902561	.	+	0	ID=cds795;Parent=gene833;Dbxref=Genbank:WP_002209369.1;Name=WP_002209369.1;gbkey=CDS;product=deoxyguanosinetriphosphate triphosphohydrolase;protein_id=WP_002209369.1;transl_table=11
NC_004088.1	RefSeq	gene	902759	904204	.	+	.	ID=gene834;Name=Y_RS04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04195;old_locus_tag=y0807
NC_004088.1	Protein Homology	CDS	902759	904204	.	+	0	ID=cds796;Parent=gene834;Dbxref=Genbank:WP_002209370.1;Name=WP_002209370.1;Note=protease Do%3B required at high temperature%3B degrades damaged proteins;gbkey=CDS;product=serine endoprotease;protein_id=WP_002209370.1;transl_table=11
NC_004088.1	RefSeq	gene	904363	907164	.	-	.	ID=gene835;Name=Y_RS04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04200;old_locus_tag=y0808
NC_004088.1	Protein Homology	CDS	904363	907164	.	-	0	ID=cds797;Parent=gene835;Dbxref=Genbank:WP_002228321.1;Name=WP_002228321.1;Note=part of the two-component regulatory system with UvrY%3B involved in the regulation of carbon metabolism via the csrA/csrB regulatory system;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_002228321.1;transl_table=11
NC_004088.1	RefSeq	gene	907608	909842	.	+	.	ID=gene836;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=Y_RS04205;old_locus_tag=y0811
NC_004088.1	Protein Homology	CDS	907608	909842	.	+	0	ID=cds798;Parent=gene836;Dbxref=Genbank:WP_002209373.1;Name=WP_002209373.1;Note=(p)ppGpp synthetase%3B catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP;gbkey=CDS;gene=relA;product=GTP pyrophosphokinase;protein_id=WP_002209373.1;transl_table=11
NC_004088.1	RefSeq	gene	909879	910037	.	+	.	ID=gene837;Name=Y_RS04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04210
NC_004088.1	Protein Homology	CDS	909879	910037	.	+	0	ID=cds799;Parent=gene837;Dbxref=Genbank:WP_041175908.1;Name=WP_041175908.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041175908.1;transl_table=11
NC_004088.1	RefSeq	gene	910044	910886	.	+	.	ID=gene838;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=Y_RS04215;old_locus_tag=y0812
NC_004088.1	Protein Homology	CDS	910044	910886	.	+	0	ID=cds800;Parent=gene838;Dbxref=Genbank:WP_002209374.1;Name=WP_002209374.1;Note=functions in degradation of stringent response intracellular messenger ppGpp%3B in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF%3B activity of MazG is inhibited by MazEF in vitro%3B ppGpp inhibits mazEF expression%3B MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation%3B MazG also interacts with the GTPase protein Era;gbkey=CDS;gene=mazG;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_002209374.1;transl_table=11
NC_004088.1	RefSeq	gene	911098	912735	.	+	.	ID=gene839;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=Y_RS04220;old_locus_tag=y0813
NC_004088.1	Protein Homology	CDS	911098	912735	.	+	0	ID=cds801;Parent=gene839;Dbxref=Genbank:WP_002209376.1;Name=WP_002209376.1;Note=CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer;gbkey=CDS;gene=pyrG;product=CTP synthase;protein_id=WP_002209376.1;transl_table=11
NC_004088.1	RefSeq	gene	912816	914111	.	+	.	ID=gene840;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=Y_RS04225;old_locus_tag=y0814
NC_004088.1	Protein Homology	CDS	912816	914111	.	+	0	ID=cds802;Parent=gene840;Dbxref=Genbank:WP_002209377.1;Name=WP_002209377.1;Note=catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis;gbkey=CDS;gene=eno;product=enolase;protein_id=WP_002209377.1;transl_table=11
NC_004088.1	RefSeq	gene	914483	915070	.	+	.	ID=gene841;Name=Y_RS04230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04230;old_locus_tag=y0815
NC_004088.1	Protein Homology	CDS	914483	915070	.	+	0	ID=cds803;Parent=gene841;Dbxref=Genbank:WP_002209378.1;Name=WP_002209378.1;gbkey=CDS;product=superoxide dismutase;protein_id=WP_002209378.1;transl_table=11
NC_004088.1	RefSeq	gene	915174	915845	.	+	.	ID=gene842;Name=Y_RS04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04235;old_locus_tag=y0816
NC_004088.1	Protein Homology	CDS	915174	915845	.	+	0	ID=cds804;Parent=gene842;Dbxref=Genbank:WP_002209379.1;Name=WP_002209379.1;gbkey=CDS;product=7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE;protein_id=WP_002209379.1;transl_table=11
NC_004088.1	RefSeq	gene	916079	916438	.	-	.	ID=gene843;Name=Y_RS04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04240;old_locus_tag=y0817
NC_004088.1	Protein Homology	CDS	916079	916438	.	-	0	ID=cds805;Parent=gene843;Dbxref=Genbank:WP_002209380.1;Name=WP_002209380.1;gbkey=CDS;product=6-carboxy-5%2C6%2C7%2C8-tetrahydropterin synthase;protein_id=WP_002209380.1;transl_table=11
NC_004088.1	RefSeq	gene	916831	918669	.	+	.	ID=gene844;Name=cysJ;gbkey=Gene;gene=cysJ;gene_biotype=protein_coding;locus_tag=Y_RS04245;old_locus_tag=y0818
NC_004088.1	Protein Homology	CDS	916831	918669	.	+	0	ID=cds806;Parent=gene844;Dbxref=Genbank:WP_002223202.1;Name=WP_002223202.1;Note=catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate%3B a flavoprotein with flavin reductase activity;gbkey=CDS;gene=cysJ;product=sulfite reductase subunit alpha;protein_id=WP_002223202.1;transl_table=11
NC_004088.1	RefSeq	gene	918669	920399	.	+	.	ID=gene845;Name=Y_RS04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04250;old_locus_tag=y0819
NC_004088.1	Protein Homology	CDS	918669	920399	.	+	0	ID=cds807;Parent=gene845;Dbxref=Genbank:WP_002209382.1;Name=WP_002209382.1;Note=hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide;gbkey=CDS;product=sulfite reductase subunit beta;protein_id=WP_002209382.1;transl_table=11
NC_004088.1	RefSeq	gene	920396	921122	.	+	.	ID=gene846;Name=Y_RS04255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS04255;pseudo=true
NC_004088.1	Protein Homology	CDS	920396	921122	.	+	0	ID=cds808;Parent=gene846;Note=catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phosphoadenosine phosphosulfate reductase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	921158	921337	.	+	.	ID=id116;gbkey=repeat_region
NC_004088.1	RefSeq	gene	921365	921772	.	-	.	ID=gene847;Name=Y_RS04260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04260
NC_004088.1	Protein Homology	CDS	921365	921772	.	-	0	ID=cds809;Parent=gene847;Dbxref=Genbank:WP_002209383.1;Name=WP_002209383.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209383.1;transl_table=11
NC_004088.1	RefSeq	gene	921947	922147	.	-	.	ID=gene848;Name=Y_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04265
NC_004088.1	Protein Homology	CDS	921947	922147	.	-	0	ID=cds810;Parent=gene848;Dbxref=Genbank:WP_002209384.1;Name=WP_002209384.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209384.1;transl_table=11
NC_004088.1	RefSeq	gene	922240	922437	.	+	.	ID=gene849;Name=Y_RS04270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04270
NC_004088.1	Protein Homology	CDS	922240	922437	.	+	0	ID=cds811;Parent=gene849;Dbxref=Genbank:WP_002222261.1;Name=WP_002222261.1;gbkey=CDS;product=membrane protein;protein_id=WP_002222261.1;transl_table=11
NC_004088.1	RefSeq	gene	922738	924158	.	+	.	ID=gene850;Name=Y_RS04275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS04275;pseudo=true
NC_004088.1	Protein Homology	CDS	922738	924158	.	+	0	ID=cds812;Parent=gene850;exception=annotated by transcript or proteomic data;gbkey=CDS;product=sirohydrochlorin ferrochelatase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	924169	925077	.	+	.	ID=gene851;Name=Y_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04280;old_locus_tag=y0823
NC_004088.1	Protein Homology	CDS	924169	925077	.	+	0	ID=cds813;Parent=gene851;Dbxref=Genbank:WP_002209386.1;Name=WP_002209386.1;Note=with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP;gbkey=CDS;product=sulfate adenylyltransferase subunit 2;protein_id=WP_002209386.1;transl_table=11
NC_004088.1	RefSeq	gene	925170	926606	.	+	.	ID=gene852;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=Y_RS04285;old_locus_tag=y0824
NC_004088.1	Protein Homology	CDS	925170	926606	.	+	0	ID=cds814;Parent=gene852;Dbxref=Genbank:WP_002228227.1;Name=WP_002228227.1;Note=may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step%3B forms a heterodimer with CysD%3B part of the GTP-binding elongation factor family CysN/NodQ;gbkey=CDS;gene=cysN;product=sulfate adenylyltransferase subunit 1;protein_id=WP_002228227.1;transl_table=11
NC_004088.1	RefSeq	gene	926608	927249	.	+	.	ID=gene853;Name=Y_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04290;old_locus_tag=y0825
NC_004088.1	Protein Homology	CDS	926608	927249	.	+	0	ID=cds815;Parent=gene853;Dbxref=Genbank:WP_002209388.1;Name=WP_002209388.1;Note=converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis;gbkey=CDS;product=adenylyl-sulfate kinase;protein_id=WP_002209388.1;transl_table=11
NC_004088.1	RefSeq	gene	927440	927757	.	+	.	ID=gene854;Name=Y_RS04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04295;old_locus_tag=y0826
NC_004088.1	Protein Homology	CDS	927440	927757	.	+	0	ID=cds816;Parent=gene854;Dbxref=Genbank:WP_002209389.1;Name=WP_002209389.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209389.1;transl_table=11
NC_004088.1	RefSeq	gene	928071	928391	.	+	.	ID=gene855;Name=Y_RS04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04300;old_locus_tag=y0827
NC_004088.1	Protein Homology	CDS	928071	928391	.	+	0	ID=cds817;Parent=gene855;Dbxref=Genbank:WP_002209390.1;Name=WP_002209390.1;gbkey=CDS;product=cell division protein FtsB;protein_id=WP_002209390.1;transl_table=11
NC_004088.1	RefSeq	gene	928395	929120	.	+	.	ID=gene856;Name=Y_RS04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04305;old_locus_tag=y0828
NC_004088.1	Protein Homology	CDS	928395	929120	.	+	0	ID=cds818;Parent=gene856;Dbxref=Genbank:WP_002209391.1;Name=WP_002209391.1;gbkey=CDS;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_002209391.1;transl_table=11
NC_004088.1	RefSeq	gene	929259	929747	.	+	.	ID=gene857;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=Y_RS04310;old_locus_tag=y0829
NC_004088.1	Protein Homology	CDS	929259	929747	.	+	0	ID=cds819;Parent=gene857;Dbxref=Genbank:WP_002209392.1;Name=WP_002209392.1;Note=catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate;gbkey=CDS;gene=ispF;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_002209392.1;transl_table=11
NC_004088.1	RefSeq	gene	929758	930807	.	+	.	ID=gene858;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;gene_synonym=ygbO;locus_tag=Y_RS04315;old_locus_tag=y0830
NC_004088.1	Protein Homology	CDS	929758	930807	.	+	0	ID=cds820;Parent=gene858;Dbxref=Genbank:WP_002209393.1;Name=WP_002209393.1;Note=catalyzes the modification of U13 in tRNA(Glu);gbkey=CDS;gene=truD;product=tRNA pseudouridine synthase D;protein_id=WP_002209393.1;transl_table=11
NC_004088.1	RefSeq	gene	930785	931549	.	+	.	ID=gene859;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=Y_RS04320;old_locus_tag=y0831
NC_004088.1	Protein Homology	CDS	930785	931549	.	+	0	ID=cds821;Parent=gene859;Dbxref=Genbank:WP_002209394.1;Name=WP_002209394.1;Note=broad specificity 5'(3')-nucleotidase and polyphosphatase;gbkey=CDS;gene=surE;product=5'/3'-nucleotidase SurE;protein_id=WP_002209394.1;transl_table=11
NC_004088.1	RefSeq	gene	931543	932169	.	+	.	ID=gene860;Name=pcm;gbkey=Gene;gene=pcm;gene_biotype=protein_coding;locus_tag=Y_RS04325;old_locus_tag=y0832
NC_004088.1	Protein Homology	CDS	931543	932169	.	+	0	ID=cds822;Parent=gene860;Dbxref=Genbank:WP_002209395.1;Name=WP_002209395.1;Note=catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins;gbkey=CDS;gene=pcm;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_002209395.1;transl_table=11
NC_004088.1	RefSeq	gene	932291	933274	.	+	.	ID=gene861;Name=Y_RS04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04330;old_locus_tag=y0833
NC_004088.1	Protein Homology	CDS	932291	933274	.	+	0	ID=cds823;Parent=gene861;Dbxref=Genbank:WP_002209396.1;Name=WP_002209396.1;gbkey=CDS;product=lipoprotein nlpD;protein_id=WP_002209396.1;transl_table=11
NC_004088.1	RefSeq	gene	933329	934327	.	+	.	ID=gene862;Name=Y_RS04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04335;old_locus_tag=y0834
NC_004088.1	Protein Homology	CDS	933329	934327	.	+	0	ID=cds824;Parent=gene862;Dbxref=Genbank:WP_002209397.1;Name=WP_002209397.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor controls a regulon of genes required for protection against external stresses;gbkey=CDS;product=RNA polymerase sigma factor RpoS;protein_id=WP_002209397.1;transl_table=11
NC_004088.1	RefSeq	gene	934687	937242	.	-	.	ID=gene863;Name=Y_RS04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04340;old_locus_tag=y0835
NC_004088.1	Protein Homology	CDS	934687	937242	.	-	0	ID=cds825;Parent=gene863;Dbxref=Genbank:WP_002209399.1;Name=WP_002209399.1;Note=This protein performs the mismatch recognition step during the DNA repair process;gbkey=CDS;product=DNA mismatch repair protein MutS;protein_id=WP_002209399.1;transl_table=11
NC_004088.1	RefSeq	gene	937739	937873	.	+	.	ID=gene864;Name=Y_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04345;old_locus_tag=y0836
NC_004088.1	Protein Homology	CDS	937739	937873	.	+	0	ID=cds826;Parent=gene864;Dbxref=Genbank:WP_002216243.1;Name=WP_002216243.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216243.1;transl_table=11
NC_004088.1	RefSeq	gene	938036	938491	.	-	.	ID=gene865;Name=Y_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04350;old_locus_tag=y0837
NC_004088.1	Protein Homology	CDS	938036	938491	.	-	0	ID=cds827;Parent=gene865;Dbxref=Genbank:WP_002209402.1;Name=WP_002209402.1;gbkey=CDS;product=ribose 5-phosphate isomerase;protein_id=WP_002209402.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	938749	938767	.	+	.	ID=id117;Dbxref=CollecTF:EXPSITE_00000cb0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y0838;gbkey=protein_bind
NC_004088.1	RefSeq	gene	938974	940089	.	+	.	ID=gene866;Name=Y_RS04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04355;old_locus_tag=y0838
NC_004088.1	Protein Homology	CDS	938974	940089	.	+	0	ID=cds828;Parent=gene866;Dbxref=Genbank:WP_002209403.1;Name=WP_002209403.1;gbkey=CDS;product=iditol 2-dehydrogenase;protein_id=WP_002209403.1;transl_table=11
NC_004088.1	RefSeq	gene	940153	940923	.	+	.	ID=gene867;Name=Y_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04360;old_locus_tag=y0839
NC_004088.1	Protein Homology	CDS	940153	940923	.	+	0	ID=cds829;Parent=gene867;Dbxref=Genbank:WP_002209404.1;Name=WP_002209404.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_002209404.1;transl_table=11
NC_004088.1	RefSeq	gene	941010	942011	.	+	.	ID=gene868;Name=Y_RS04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04365;old_locus_tag=y0840
NC_004088.1	Protein Homology	CDS	941010	942011	.	+	0	ID=cds830;Parent=gene868;Dbxref=Genbank:WP_002228229.1;Name=WP_002228229.1;Note=with DhaL and DhaM forms dihydroxyacetone kinase%2C which is responsible for phosphorylating dihydroxyacetone%3B DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase;gbkey=CDS;product=dihydroxyacetone kinase;protein_id=WP_002228229.1;transl_table=11
NC_004088.1	RefSeq	gene	942018	942692	.	+	.	ID=gene869;Name=Y_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04370;old_locus_tag=y0842
NC_004088.1	Protein Homology	CDS	942018	942692	.	+	0	ID=cds831;Parent=gene869;Dbxref=Genbank:WP_002209406.1;Name=WP_002209406.1;gbkey=CDS;product=dihydroxyacetone kinase;protein_id=WP_002209406.1;transl_table=11
NC_004088.1	RefSeq	gene	942813	943784	.	-	.	ID=gene870;Name=Y_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04375;old_locus_tag=y0843
NC_004088.1	Protein Homology	CDS	942813	943784	.	-	0	ID=cds832;Parent=gene870;Dbxref=Genbank:WP_002209407.1;Name=WP_002209407.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209407.1;transl_table=11
NC_004088.1	RefSeq	gene	944339	945628	.	-	.	ID=gene871;Name=Y_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04380;old_locus_tag=y0844
NC_004088.1	Protein Homology	CDS	944339	945628	.	-	0	ID=cds833;Parent=gene871;Dbxref=Genbank:WP_002209408.1;Name=WP_002209408.1;gbkey=CDS;product=arylsulfatase;protein_id=WP_002209408.1;transl_table=11
NC_004088.1	RefSeq	gene	945713	946054	.	-	.	ID=gene872;Name=Y_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04385;old_locus_tag=y0845
NC_004088.1	Protein Homology	CDS	945713	946054	.	-	0	ID=cds834;Parent=gene872;Dbxref=Genbank:WP_002209409.1;Name=WP_002209409.1;Note=regulates the expression of of the arsRBC involved in resistance to arsenic;gbkey=CDS;product=ArsR family transcriptional regulator;protein_id=WP_002209409.1;transl_table=11
NC_004088.1	RefSeq	gene	946301	946564	.	-	.	ID=gene873;Name=Y_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04390
NC_004088.1	Protein Homology	CDS	946301	946564	.	-	0	ID=cds835;Parent=gene873;Dbxref=Genbank:WP_002217994.1;Name=WP_002217994.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217994.1;transl_table=11
NC_004088.1	RefSeq	gene	946775	946978	.	-	.	ID=gene874;Name=Y_RS04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04395;old_locus_tag=y0846
NC_004088.1	Protein Homology	CDS	946775	946978	.	-	0	ID=cds836;Parent=gene874;Dbxref=Genbank:WP_002209410.1;Name=WP_002209410.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209410.1;transl_table=11
NC_004088.1	RefSeq	gene	947402	948166	.	-	.	ID=gene875;Name=Y_RS04400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04400;old_locus_tag=y0847
NC_004088.1	Protein Homology	CDS	947402	948166	.	-	0	ID=cds837;Parent=gene875;Dbxref=Genbank:WP_002209411.1;Name=WP_002209411.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_002209411.1;transl_table=11
NC_004088.1	RefSeq	gene	948237	949616	.	-	.	ID=gene876;Name=Y_RS04405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04405;old_locus_tag=y0848
NC_004088.1	Protein Homology	CDS	948237	949616	.	-	0	ID=cds838;Parent=gene876;Dbxref=Genbank:WP_002209412.1;Name=WP_002209412.1;gbkey=CDS;product=cytochrome C peroxidase;protein_id=WP_002209412.1;transl_table=11
NC_004088.1	RefSeq	gene	949853	950104	.	-	.	ID=gene877;Name=Y_RS04410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04410;old_locus_tag=y0849
NC_004088.1	Protein Homology	CDS	949853	950104	.	-	0	ID=cds839;Parent=gene877;Dbxref=Genbank:WP_002223220.1;Name=WP_002223220.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002223220.1;transl_table=11
NC_004088.1	RefSeq	gene	950277	952373	.	+	.	ID=gene878;Name=Y_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04415;old_locus_tag=y0850
NC_004088.1	Protein Homology	CDS	950277	952373	.	+	0	ID=cds840;Parent=gene878;Dbxref=Genbank:WP_002223222.1;Name=WP_002223222.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_002223222.1;transl_table=11
NC_004088.1	RefSeq	gene	952806	953993	.	+	.	ID=gene879;Name=Y_RS04420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04420;old_locus_tag=y0851
NC_004088.1	Protein Homology	CDS	952806	953993	.	+	0	ID=cds841;Parent=gene879;Dbxref=Genbank:WP_002209414.1;Name=WP_002209414.1;gbkey=CDS;product=enterotoxin;protein_id=WP_002209414.1;transl_table=11
NC_004088.1	RefSeq	gene	954156	954341	.	+	.	ID=gene880;Name=Y_RS04425;gbkey=Gene;gene_biotype=other;locus_tag=Y_RS04425
NC_004088.1	RefSeq	gene	954351	955136	.	-	.	ID=gene881;Name=Y_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04430;old_locus_tag=y0852
NC_004088.1	Protein Homology	CDS	954351	955136	.	-	0	ID=cds842;Parent=gene881;Dbxref=Genbank:WP_002209416.1;Name=WP_002209416.1;gbkey=CDS;product=methionine aminopeptidase type I;protein_id=WP_002209416.1;transl_table=11
NC_004088.1	RefSeq	gene	955133	955384	.	-	.	ID=gene882;Name=Y_RS04435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04435;old_locus_tag=y0853
NC_004088.1	Protein Homology	CDS	955133	955384	.	-	0	ID=cds843;Parent=gene882;Dbxref=Genbank:WP_002209417.1;Name=WP_002209417.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209417.1;transl_table=11
NC_004088.1	RefSeq	gene	955567	957210	.	-	.	ID=gene883;Name=Y_RS04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04440;old_locus_tag=y0854
NC_004088.1	Protein Homology	CDS	955567	957210	.	-	0	ID=cds844;Parent=gene883;Dbxref=Genbank:WP_002209418.1;Name=WP_002209418.1;Note=catalyzes the formation of malate from fumerate;gbkey=CDS;product=fumarate hydratase;protein_id=WP_002209418.1;transl_table=11
NC_004088.1	RefSeq	gene	957608	959104	.	-	.	ID=gene884;Name=Y_RS04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04445;old_locus_tag=y0855
NC_004088.1	Protein Homology	CDS	957608	959104	.	-	0	ID=cds845;Parent=gene884;Dbxref=Genbank:WP_002209419.1;Name=WP_002209419.1;gbkey=CDS;product=3-keto-L-gulonate kinase;protein_id=WP_002209419.1;transl_table=11
NC_004088.1	RefSeq	gene	959115	959996	.	-	.	ID=gene885;Name=Y_RS04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04450;old_locus_tag=y0856
NC_004088.1	Protein Homology	CDS	959115	959996	.	-	0	ID=cds846;Parent=gene885;Dbxref=Genbank:WP_002209420.1;Name=WP_002209420.1;Note=L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated%3B may be involved in the utilization of 2%2C3-diketo-L-gulonate;gbkey=CDS;product=L-xylulose 5-phosphate 3-epimerase;protein_id=WP_002209420.1;transl_table=11
NC_004088.1	RefSeq	gene	960202	961239	.	-	.	ID=gene886;Name=Y_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04455;old_locus_tag=y0857
NC_004088.1	Protein Homology	CDS	960202	961239	.	-	0	ID=cds847;Parent=gene886;Dbxref=Genbank:WP_002216010.1;Name=WP_002216010.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002216010.1;transl_table=11
NC_004088.1	RefSeq	gene	961252	962241	.	-	.	ID=gene887;Name=Y_RS04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04460;old_locus_tag=y0858
NC_004088.1	Protein Homology	CDS	961252	962241	.	-	0	ID=cds848;Parent=gene887;Dbxref=Genbank:WP_002209421.1;Name=WP_002209421.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002209421.1;transl_table=11
NC_004088.1	RefSeq	gene	962234	963748	.	-	.	ID=gene888;Name=Y_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04465;old_locus_tag=y0859
NC_004088.1	Protein Homology	CDS	962234	963748	.	-	0	ID=cds849;Parent=gene888;Dbxref=Genbank:WP_002223226.1;Name=WP_002223226.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002223226.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	963789	964506	.	+	.	ID=id118;gbkey=repeat_region
NC_004088.1	RefSeq	region	963793	964502	.	-	.	ID=id119;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	963899	964357	.	-	.	ID=gene889;Name=Y_RS04470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04470;old_locus_tag=y0860
NC_004088.1	Protein Homology	CDS	963899	964357	.	-	0	ID=cds850;Parent=gene889;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	964608	965612	.	-	.	ID=gene890;Name=Y_RS04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04475;old_locus_tag=y0861
NC_004088.1	Protein Homology	CDS	964608	965612	.	-	0	ID=cds851;Parent=gene890;Dbxref=Genbank:WP_002216011.1;Name=WP_002216011.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_002216011.1;transl_table=11
NC_004088.1	RefSeq	gene	965773	966582	.	-	.	ID=gene891;Name=Y_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04480;old_locus_tag=y0862
NC_004088.1	Protein Homology	CDS	965773	966582	.	-	0	ID=cds852;Parent=gene891;Dbxref=Genbank:WP_002209424.1;Name=WP_002209424.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_002209424.1;transl_table=11
NC_004088.1	RefSeq	gene	967285	967980	.	+	.	ID=gene892;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=Y_RS04485;old_locus_tag=y0863
NC_004088.1	Protein Homology	CDS	967285	967980	.	+	0	ID=cds853;Parent=gene892;Dbxref=Genbank:WP_002209426.1;Name=WP_002209426.1;Note=catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_002209426.1;transl_table=11
NC_004088.1	RefSeq	gene	968443	970893	.	+	.	ID=gene893;Name=Y_RS04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04490;old_locus_tag=y0864
NC_004088.1	Protein Homology	CDS	968443	970893	.	+	0	ID=cds854;Parent=gene893;Dbxref=Genbank:WP_002209427.1;Name=WP_002209427.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit A;protein_id=WP_002209427.1;transl_table=11
NC_004088.1	RefSeq	gene	970905	971522	.	+	.	ID=gene894;Name=Y_RS04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04495;old_locus_tag=y0865
NC_004088.1	Protein Homology	CDS	970905	971522	.	+	0	ID=cds855;Parent=gene894;Dbxref=Genbank:WP_002209428.1;Name=WP_002209428.1;Note=oxidoreductase%2C Fe-S subunit%3B terminal electron transfer protein for the reduction of DMSO;gbkey=CDS;product=4Fe-4S ferredoxin;protein_id=WP_002209428.1;transl_table=11
NC_004088.1	RefSeq	gene	971524	972384	.	+	.	ID=gene895;Name=Y_RS04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04500;old_locus_tag=y0866
NC_004088.1	Protein Homology	CDS	971524	972384	.	+	0	ID=cds856;Parent=gene895;Dbxref=Genbank:WP_002209429.1;Name=WP_002209429.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit C;protein_id=WP_002209429.1;transl_table=11
NC_004088.1	RefSeq	gene	972530	973240	.	+	.	ID=gene896;Name=Y_RS04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04505;old_locus_tag=y0867
NC_004088.1	Protein Homology	CDS	972530	973240	.	+	0	ID=cds857;Parent=gene896;Dbxref=Genbank:WP_002209430.1;Name=WP_002209430.1;Note=binds to the twin-arginine signal peptides of certain proteins%2C including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane;gbkey=CDS;product=twin-argninine leader-binding protein DmsD;protein_id=WP_002209430.1;transl_table=11
NC_004088.1	RefSeq	gene	973497	974027	.	-	.	ID=gene897;Name=Y_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04510;old_locus_tag=y0868
NC_004088.1	Protein Homology	CDS	973497	974027	.	-	0	ID=cds858;Parent=gene897;Dbxref=Genbank:WP_002215100.1;Name=WP_002215100.1;Note=B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm;gbkey=CDS;product=cytochrome b561;protein_id=WP_002215100.1;transl_table=11
NC_004088.1	RefSeq	gene	974175	974558	.	-	.	ID=gene898;Name=Y_RS04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04515
NC_004088.1	Protein Homology	CDS	974175	974558	.	-	0	ID=cds859;Parent=gene898;Dbxref=Genbank:WP_002215101.1;Name=WP_002215101.1;Note=electron transport protein;gbkey=CDS;product=soluble cytochrome b562 1;protein_id=WP_002215101.1;transl_table=11
NC_004088.1	RefSeq	gene	974635	976848	.	-	.	ID=gene899;Name=Y_RS04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04520;old_locus_tag=y0870
NC_004088.1	Protein Homology	CDS	974635	976848	.	-	0	ID=cds860;Parent=gene899;Dbxref=Genbank:WP_002209433.1;Name=WP_002209433.1;gbkey=CDS;product=catalase-peroxidase;protein_id=WP_002209433.1;transl_table=11
NC_004088.1	RefSeq	gene	977384	978325	.	+	.	ID=gene900;Name=Y_RS04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04525;old_locus_tag=y0871
NC_004088.1	Protein Homology	CDS	977384	978325	.	+	0	ID=cds861;Parent=gene900;Dbxref=Genbank:WP_002209434.1;Name=WP_002209434.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002209434.1;transl_table=11
NC_004088.1	RefSeq	gene	978418	979035	.	+	.	ID=gene901;Name=Y_RS04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04530;old_locus_tag=y0872
NC_004088.1	Protein Homology	CDS	978418	979035	.	+	0	ID=cds862;Parent=gene901;Dbxref=Genbank:WP_002209435.1;Name=WP_002209435.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002209435.1;transl_table=11
NC_004088.1	RefSeq	gene	979035	980558	.	+	.	ID=gene902;Name=Y_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04535;old_locus_tag=y0873
NC_004088.1	Protein Homology	CDS	979035	980558	.	+	0	ID=cds863;Parent=gene902;Dbxref=Genbank:WP_002209436.1;Name=WP_002209436.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002209436.1;transl_table=11
NC_004088.1	RefSeq	gene	980558	981700	.	+	.	ID=gene903;Name=Y_RS04540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04540;old_locus_tag=y0874
NC_004088.1	Protein Homology	CDS	980558	981700	.	+	0	ID=cds864;Parent=gene903;Dbxref=Genbank:WP_002354764.1;Name=WP_002354764.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002354764.1;transl_table=11
NC_004088.1	RefSeq	gene	981951	982781	.	+	.	ID=gene904;Name=Y_RS04545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04545
NC_004088.1	Protein Homology	CDS	981951	982781	.	+	0	ID=cds865;Parent=gene904;Dbxref=Genbank:WP_002209438.1;Name=WP_002209438.1;gbkey=CDS;product=transketolase;protein_id=WP_002209438.1;transl_table=11
NC_004088.1	RefSeq	gene	982774	983718	.	+	.	ID=gene905;Name=Y_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04550
NC_004088.1	Protein Homology	CDS	982774	983718	.	+	0	ID=cds866;Parent=gene905;Dbxref=Genbank:WP_002209439.1;Name=WP_002209439.1;gbkey=CDS;product=transketolase;protein_id=WP_002209439.1;transl_table=11
NC_004088.1	RefSeq	gene	983721	985208	.	+	.	ID=gene906;Name=Y_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04555;old_locus_tag=y0876
NC_004088.1	Protein Homology	CDS	983721	985208	.	+	0	ID=cds867;Parent=gene906;Dbxref=Genbank:WP_002209440.1;Name=WP_002209440.1;gbkey=CDS;product=glycerol kinase;protein_id=WP_002209440.1;transl_table=11
NC_004088.1	RefSeq	gene	985229	986653	.	+	.	ID=gene907;Name=Y_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04560;old_locus_tag=y0877
NC_004088.1	Protein Homology	CDS	985229	986653	.	+	0	ID=cds868;Parent=gene907;Dbxref=Genbank:WP_002209441.1;Name=WP_002209441.1;gbkey=CDS;product=fucose isomerase;protein_id=WP_002209441.1;transl_table=11
NC_004088.1	RefSeq	gene	986740	986883	.	+	.	ID=gene908;Name=Y_RS21765;gbkey=Gene;gene_biotype=other;locus_tag=Y_RS21765
NC_004088.1	RefSeq	gene	986875	987819	.	-	.	ID=gene909;Name=Y_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04565;old_locus_tag=y0878
NC_004088.1	Protein Homology	CDS	986875	987819	.	-	0	ID=cds869;Parent=gene909;Dbxref=Genbank:WP_002209443.1;Name=WP_002209443.1;gbkey=CDS;product=DNA-binding transcriptional regulator;protein_id=WP_002209443.1;transl_table=11
NC_004088.1	RefSeq	gene	988067	989407	.	-	.	ID=gene910;Name=Y_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04570;old_locus_tag=y0879
NC_004088.1	Protein Homology	CDS	988067	989407	.	-	0	ID=cds870;Parent=gene910;Dbxref=Genbank:WP_002209444.1;Name=WP_002209444.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002209444.1;transl_table=11
NC_004088.1	RefSeq	gene	989724	990212	.	+	.	ID=gene911;Name=Y_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04575
NC_004088.1	Protein Homology	CDS	989724	990212	.	+	0	ID=cds871;Parent=gene911;Dbxref=Genbank:WP_002209445.1;Name=WP_002209445.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209445.1;transl_table=11
NC_004088.1	RefSeq	gene	990327	991397	.	+	.	ID=gene912;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=Y_RS04580;old_locus_tag=y0881
NC_004088.1	Protein Homology	CDS	990327	991397	.	+	0	ID=cds872;Parent=gene912;Dbxref=Genbank:WP_002209446.1;Name=WP_002209446.1;Note=catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs;gbkey=CDS;gene=recA;product=protein RecA;protein_id=WP_002209446.1;transl_table=11
NC_004088.1	RefSeq	gene	991535	992098	.	+	.	ID=gene913;Name=Y_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04585;old_locus_tag=y0882
NC_004088.1	Protein Homology	CDS	991535	992098	.	+	0	ID=cds873;Parent=gene913;Dbxref=Genbank:WP_002209447.1;Name=WP_002209447.1;gbkey=CDS;product=regulatory protein RecX;protein_id=WP_002209447.1;transl_table=11
NC_004088.1	RefSeq	gene	992238	994865	.	+	.	ID=gene914;Name=Y_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04590;old_locus_tag=y0883
NC_004088.1	Protein Homology	CDS	992238	994865	.	+	0	ID=cds874;Parent=gene914;Dbxref=Genbank:WP_002209448.1;Name=WP_002209448.1;gbkey=CDS;product=alanine--tRNA ligase;protein_id=WP_002209448.1;transl_table=11
NC_004088.1	RefSeq	gene	995115	995300	.	+	.	ID=gene915;Name=Y_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04595;old_locus_tag=y0884
NC_004088.1	Protein Homology	CDS	995115	995300	.	+	0	ID=cds875;Parent=gene915;Dbxref=Genbank:WP_002209449.1;Name=WP_002209449.1;Note=affects carbohydrate metabolism%3B has regulatory role in many processes;gbkey=CDS;product=carbon storage regulator homolog;protein_id=WP_002209449.1;transl_table=11
NC_004088.1	RefSeq	gene	995663	995755	.	+	.	ID=gene916;Name=Y_RS04600;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS04600;old_locus_tag=yt023
NC_004088.1	tRNAscan-SE	tRNA	995663	995755	.	+	.	ID=rna37;Parent=gene916;anticodon=(pos:995697..995699);gbkey=tRNA;product=tRNA-Ser
NC_004088.1	tRNAscan-SE	exon	995663	995755	.	+	.	ID=id120;Parent=rna37;anticodon=(pos:995697..995699);gbkey=tRNA;product=tRNA-Ser
NC_004088.1	RefSeq	gene	995764	995840	.	+	.	ID=gene917;Name=Y_RS04605;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS04605;old_locus_tag=yt024
NC_004088.1	tRNAscan-SE	tRNA	995764	995840	.	+	.	ID=rna38;Parent=gene917;anticodon=(pos:995798..995800);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	tRNAscan-SE	exon	995764	995840	.	+	.	ID=id121;Parent=rna38;anticodon=(pos:995798..995800);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	RefSeq	gene	995898	995974	.	+	.	ID=gene918;Name=Y_RS04610;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS04610;old_locus_tag=yt025
NC_004088.1	tRNAscan-SE	tRNA	995898	995974	.	+	.	ID=rna39;Parent=gene918;anticodon=(pos:995932..995934);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	tRNAscan-SE	exon	995898	995974	.	+	.	ID=id122;Parent=rna39;anticodon=(pos:995932..995934);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	RefSeq	gene	996054	996130	.	+	.	ID=gene919;Name=Y_RS04615;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS04615;old_locus_tag=yt026
NC_004088.1	tRNAscan-SE	tRNA	996054	996130	.	+	.	ID=rna40;Parent=gene919;anticodon=(pos:996088..996090);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	tRNAscan-SE	exon	996054	996130	.	+	.	ID=id123;Parent=rna40;anticodon=(pos:996088..996090);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	RefSeq	gene	996553	997119	.	+	.	ID=gene920;Name=Y_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04620;old_locus_tag=y0885
NC_004088.1	Protein Homology	CDS	996553	997119	.	+	0	ID=cds876;Parent=gene920;Dbxref=Genbank:WP_002209450.1;Name=WP_002209450.1;Note=YqaB%3B catalyzes the dephosphorylation of fructose 1-phosphate%2C 6-phosphogluconate and p-nitrophenyl phosphate (pNPP)%3B presents beta-phosphoglucomutase activity at a lower extent;gbkey=CDS;product=fructose-1-P/6-phosphogluconate phosphatase;protein_id=WP_002209450.1;transl_table=11
NC_004088.1	RefSeq	gene	997116	997544	.	+	.	ID=gene921;Name=Y_RS04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04625;old_locus_tag=y0886
NC_004088.1	Protein Homology	CDS	997116	997544	.	+	0	ID=cds877;Parent=gene921;Dbxref=Genbank:WP_002209451.1;Name=WP_002209451.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209451.1;transl_table=11
NC_004088.1	RefSeq	gene	997627	999186	.	+	.	ID=gene922;Name=Y_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04630;old_locus_tag=y0887
NC_004088.1	Protein Homology	CDS	997627	999186	.	+	0	ID=cds878;Parent=gene922;Dbxref=Genbank:WP_002228236.1;Name=WP_002228236.1;Note=involved in the first step of glutathione biosynthesis;gbkey=CDS;product=glutamate--cysteine ligase;protein_id=WP_002228236.1;transl_table=11
NC_004088.1	RefSeq	gene	999354	999869	.	+	.	ID=gene923;Name=Y_RS04635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04635;old_locus_tag=y0888
NC_004088.1	Protein Homology	CDS	999354	999869	.	+	0	ID=cds879;Parent=gene923;Dbxref=Genbank:WP_002209453.1;Name=WP_002209453.1;Note=catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2;gbkey=CDS;product=S-ribosylhomocysteine lyase;protein_id=WP_002209453.1;transl_table=11
NC_004088.1	RefSeq	gene	999910	1000083	.	+	.	ID=gene924;Name=Y_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04640
NC_004088.1	Protein Homology	CDS	999910	1000083	.	+	0	ID=cds880;Parent=gene924;Dbxref=Genbank:WP_029787775.1;Name=WP_029787775.1;gbkey=CDS;product=transposase;protein_id=WP_029787775.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	999920	1000643	.	+	.	ID=id124;gbkey=repeat_region
NC_004088.1	RefSeq	region	999928	1000637	.	+	.	ID=id125;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1000073	1000531	.	+	.	ID=gene925;Name=Y_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04645;old_locus_tag=y0889
NC_004088.1	Protein Homology	CDS	1000073	1000531	.	+	0	ID=cds881;Parent=gene925;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	1000669	1001952	.	-	.	ID=gene926;Name=Y_RS04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04650;old_locus_tag=y0890
NC_004088.1	Protein Homology	CDS	1000669	1001952	.	-	0	ID=cds882;Parent=gene926;Dbxref=Genbank:WP_002209454.1;Name=WP_002209454.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209454.1;transl_table=11
NC_004088.1	RefSeq	gene	1002021	1002812	.	-	.	ID=gene927;Name=Y_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04655;old_locus_tag=y0891
NC_004088.1	Protein Homology	CDS	1002021	1002812	.	-	0	ID=cds883;Parent=gene927;Dbxref=Genbank:WP_002209455.1;Name=WP_002209455.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209455.1;transl_table=11
NC_004088.1	RefSeq	gene	1002978	1004339	.	+	.	ID=gene928;Name=Y_RS04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04660;old_locus_tag=y0892
NC_004088.1	Protein Homology	CDS	1002978	1004339	.	+	0	ID=cds884;Parent=gene928;Dbxref=Genbank:WP_002209456.1;Name=WP_002209456.1;gbkey=CDS;product=signal recognition particle protein;protein_id=WP_002209456.1;transl_table=11
NC_004088.1	RefSeq	gene	1004567	1004815	.	+	.	ID=gene929;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=Y_RS04665;old_locus_tag=y0894
NC_004088.1	Protein Homology	CDS	1004567	1004815	.	+	0	ID=cds885;Parent=gene929;Dbxref=Genbank:WP_002209458.1;Name=WP_002209458.1;Note=binds to lower part of 30S body where it stabilizes two domains%3B required for efficient assembly of 30S%3B in Escherichia coli this protein has nuclease activity;gbkey=CDS;gene=rpsP;product=30S ribosomal protein S16;protein_id=WP_002209458.1;transl_table=11
NC_004088.1	RefSeq	gene	1004837	1005385	.	+	.	ID=gene930;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=Y_RS04670;old_locus_tag=y0895
NC_004088.1	Protein Homology	CDS	1004837	1005385	.	+	0	ID=cds886;Parent=gene930;Dbxref=Genbank:WP_002209459.1;Name=WP_002209459.1;Note=Essential for efficient processing of 16S rRNA;gbkey=CDS;gene=rimM;product=ribosome maturation factor RimM;protein_id=WP_002209459.1;transl_table=11
NC_004088.1	RefSeq	gene	1005424	1006164	.	+	.	ID=gene931;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=Y_RS04675;old_locus_tag=y0896
NC_004088.1	Protein Homology	CDS	1005424	1006164	.	+	0	ID=cds887;Parent=gene931;Dbxref=Genbank:WP_002222284.1;Name=WP_002222284.1;Note=methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA;gbkey=CDS;gene=trmD;product=tRNA (guanine-N(1)-)-methyltransferase;protein_id=WP_002222284.1;transl_table=11
NC_004088.1	RefSeq	gene	1006245	1006592	.	+	.	ID=gene932;Name=Y_RS04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04680;old_locus_tag=y0897
NC_004088.1	Protein Homology	CDS	1006245	1006592	.	+	0	ID=cds888;Parent=gene932;Dbxref=Genbank:WP_002209461.1;Name=WP_002209461.1;gbkey=CDS;product=50S ribosomal protein L19;protein_id=WP_002209461.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1006652	1007374	.	+	.	ID=id126;gbkey=repeat_region
NC_004088.1	RefSeq	region	1006659	1007368	.	+	.	ID=id127;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1006659	1006814	.	+	.	ID=gene933;Name=Y_RS04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04685
NC_004088.1	Protein Homology	CDS	1006659	1006814	.	+	0	ID=cds889;Parent=gene933;Dbxref=Genbank:WP_002213757.1;Name=WP_002213757.1;gbkey=CDS;product=invasin;protein_id=WP_002213757.1;transl_table=11
NC_004088.1	RefSeq	gene	1006804	1007262	.	+	.	ID=gene934;Name=Y_RS04690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04690;old_locus_tag=y0898
NC_004088.1	Protein Homology	CDS	1006804	1007262	.	+	0	ID=cds890;Parent=gene934;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	1007565	1008332	.	-	.	ID=gene935;Name=Y_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04695;old_locus_tag=y0899
NC_004088.1	Protein Homology	CDS	1007565	1008332	.	-	0	ID=cds891;Parent=gene935;Dbxref=Genbank:WP_002209462.1;Name=WP_002209462.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209462.1;transl_table=11
NC_004088.1	RefSeq	gene	1008655	1008951	.	-	.	ID=gene936;Name=Y_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04700
NC_004088.1	Protein Homology	CDS	1008655	1008951	.	-	0	ID=cds892;Parent=gene936;Dbxref=Genbank:WP_002217480.1;Name=WP_002217480.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_002217480.1;transl_table=11
NC_004088.1	RefSeq	gene	1008939	1009250	.	-	.	ID=gene937;Name=Y_RS04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04705
NC_004088.1	Protein Homology	CDS	1008939	1009250	.	-	0	ID=cds893;Parent=gene937;Dbxref=Genbank:WP_002228328.1;Name=WP_002228328.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_002228328.1;transl_table=11
NC_004088.1	RefSeq	gene	1009319	1009936	.	-	.	ID=gene938;Name=Y_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04710;old_locus_tag=y0901
NC_004088.1	Protein Homology	CDS	1009319	1009936	.	-	0	ID=cds894;Parent=gene938;Dbxref=Genbank:WP_002217484.1;Name=WP_002217484.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_002217484.1;transl_table=11
NC_004088.1	RefSeq	gene	1010428	1011144	.	-	.	ID=gene939;Name=Y_RS04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04715;old_locus_tag=y0902
NC_004088.1	Protein Homology	CDS	1010428	1011144	.	-	0	ID=cds895;Parent=gene939;Dbxref=Genbank:WP_002223245.1;Name=WP_002223245.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002223245.1;transl_table=11
NC_004088.1	RefSeq	gene	1011377	1012447	.	+	.	ID=gene940;Name=Y_RS04720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04720;old_locus_tag=y0903
NC_004088.1	Protein Homology	CDS	1011377	1012447	.	+	0	ID=cds896;Parent=gene940;Dbxref=Genbank:WP_002228238.1;Name=WP_002228238.1;Note=catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C tyrosine sensitive;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=WP_002228238.1;transl_table=11
NC_004088.1	RefSeq	gene	1012460	1013581	.	+	.	ID=gene941;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=Y_RS04725;old_locus_tag=y0904
NC_004088.1	Protein Homology	CDS	1012460	1013581	.	+	0	ID=cds897;Parent=gene941;Dbxref=Genbank:WP_002209465.1;Name=WP_002209465.1;Note=catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis;gbkey=CDS;gene=tyrA;product=chorismate mutase;protein_id=WP_002209465.1;transl_table=11
NC_004088.1	RefSeq	gene	1013686	1014105	.	-	.	ID=gene942;Name=pheA;end_range=1014105,.;gbkey=Gene;gene=pheA;gene_biotype=pseudogene;locus_tag=Y_RS04730;partial=true;pseudo=true
NC_004088.1	Protein Homology	CDS	1013686	1014105	.	-	0	ID=cds898;Parent=gene942;Note=catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis;end_range=1014105,.;exception=unextendable partial coding region;gbkey=CDS;gene=pheA;partial=true;product=chorismate mutase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	1014087	1016046	.	+	.	ID=id128;gbkey=repeat_region;gene=pheA
NC_004088.1	RefSeq	region	1014091	1016044	.	-	.	ID=id129;Note=insertion element;gbkey=mobile_element;gene=pheA
NC_004088.1	RefSeq	gene	1014157	1014936	.	-	.	ID=gene943;Name=Y_RS04735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04735;old_locus_tag=y0905
NC_004088.1	Protein Homology	CDS	1014157	1014936	.	-	0	ID=cds899;Parent=gene943;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	1014936	1015958	.	-	.	ID=gene944;Name=Y_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04740;old_locus_tag=y0906
NC_004088.1	Protein Homology	CDS	1014936	1015958	.	-	0	ID=cds900;Parent=gene944;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	1016007	1016802	.	-	.	ID=gene945;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=pseudogene;locus_tag=Y_RS04745;partial=true;pseudo=true;start_range=.,1016007
NC_004088.1	Protein Homology	CDS	1016007	1016802	.	-	0	ID=cds901;Parent=gene945;Note=catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=pheA;partial=true;product=chorismate mutase;pseudo=true;start_range=.,1016007;transl_table=11
NC_004088.1	RefSeq	repeat_region	1016933	1017652	.	+	.	ID=id130;gbkey=repeat_region
NC_004088.1	RefSeq	region	1016940	1017649	.	+	.	ID=id131;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1017085	1017543	.	+	.	ID=gene946;Name=Y_RS04750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04750;old_locus_tag=y0908
NC_004088.1	Protein Homology	CDS	1017085	1017543	.	+	0	ID=cds902;Parent=gene946;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1017874	1018236	.	-	.	ID=gene947;Name=Y_RS04755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04755
NC_004088.1	Protein Homology	CDS	1017874	1018236	.	-	0	ID=cds903;Parent=gene947;Dbxref=Genbank:WP_002209468.1;Name=WP_002209468.1;Note=associated with 30S ribosomal subunit%3B interferes with translation elongation;gbkey=CDS;product=cold-shock protein;protein_id=WP_002209468.1;transl_table=11
NC_004088.1	RefSeq	gene	1018591	1019322	.	-	.	ID=gene948;Name=Y_RS04760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04760;old_locus_tag=y0911
NC_004088.1	Protein Homology	CDS	1018591	1019322	.	-	0	ID=cds904;Parent=gene948;Dbxref=Genbank:WP_002209469.1;Name=WP_002209469.1;gbkey=CDS;product=outer membrane biogenesis protein BamD;protein_id=WP_002209469.1;transl_table=11
NC_004088.1	RefSeq	gene	1019458	1020435	.	+	.	ID=gene949;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=Y_RS04765;old_locus_tag=y0912
NC_004088.1	Protein Homology	CDS	1019458	1020435	.	+	0	ID=cds905;Parent=gene949;Dbxref=Genbank:WP_002209470.1;Name=WP_002209470.1;Note=responsible for synthesis of pseudouridine from uracil at positions 1911%2C 1915 and 1917 in 23S ribosomal RNA;gbkey=CDS;gene=rluD;product=ribosomal large subunit pseudouridine synthase D;protein_id=WP_002209470.1;transl_table=11
NC_004088.1	RefSeq	gene	1020437	1021168	.	+	.	ID=gene950;Name=Y_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04770;old_locus_tag=y0913
NC_004088.1	Protein Homology	CDS	1020437	1021168	.	+	0	ID=cds906;Parent=gene950;Dbxref=Genbank:WP_002209471.1;Name=WP_002209471.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209471.1;transl_table=11
NC_004088.1	RefSeq	gene	1021298	1023871	.	+	.	ID=gene951;Name=Y_RS04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04775;old_locus_tag=y0914
NC_004088.1	Protein Homology	CDS	1021298	1023871	.	+	0	ID=cds907;Parent=gene951;Dbxref=Genbank:WP_002217405.1;Name=WP_002217405.1;gbkey=CDS;product=chaperone protein ClpB;protein_id=WP_002217405.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1023953	1029849	.	+	.	ID=id132;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1024385	1025933	.	+	.	ID=gene952;Name=Y_RS04785;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS04785;old_locus_tag=yr014
NC_004088.1	RefSeq	rRNA	1024385	1025933	.	+	.	ID=rna41;Parent=gene952;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	exon	1024385	1025933	.	+	.	ID=id133;Parent=rna41;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	gene	1026033	1026109	.	+	.	ID=gene953;Name=Y_RS04790;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS04790;old_locus_tag=yt027
NC_004088.1	tRNAscan-SE	tRNA	1026033	1026109	.	+	.	ID=rna42;Parent=gene953;anticodon=(pos:1026067..1026069);gbkey=tRNA;product=tRNA-Ile
NC_004088.1	tRNAscan-SE	exon	1026033	1026109	.	+	.	ID=id134;Parent=rna42;anticodon=(pos:1026067..1026069);gbkey=tRNA;product=tRNA-Ile
NC_004088.1	RefSeq	gene	1026161	1026236	.	+	.	ID=gene954;Name=Y_RS04795;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS04795;old_locus_tag=yt028
NC_004088.1	tRNAscan-SE	tRNA	1026161	1026236	.	+	.	ID=rna43;Parent=gene954;anticodon=(pos:1026194..1026196);gbkey=tRNA;product=tRNA-Ala
NC_004088.1	tRNAscan-SE	exon	1026161	1026236	.	+	.	ID=id135;Parent=rna43;anticodon=(pos:1026194..1026196);gbkey=tRNA;product=tRNA-Ala
NC_004088.1	RefSeq	gene	1026446	1029379	.	+	.	ID=gene955;Name=Y_RS04800;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS04800;old_locus_tag=yr015
NC_004088.1	RefSeq	rRNA	1026446	1029379	.	+	.	ID=rna44;Parent=gene955;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	exon	1026446	1029379	.	+	.	ID=id136;Parent=rna44;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	gene	1029471	1029586	.	+	.	ID=gene956;Name=Y_RS04805;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS04805;old_locus_tag=yr016
NC_004088.1	cmsearch	rRNA	1029471	1029586	.	+	.	ID=rna45;Parent=gene956;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	cmsearch	exon	1029471	1029586	.	+	.	ID=id137;Parent=rna45;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	RefSeq	gene	1029674	1029865	.	+	.	ID=gene957;Name=Y_RS04810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04810
NC_004088.1	Protein Homology	CDS	1029674	1029865	.	+	0	ID=cds908;Parent=gene957;Dbxref=Genbank:WP_002360510.1;Name=WP_002360510.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002360510.1;transl_table=11
NC_004088.1	RefSeq	gene	1029974	1030315	.	-	.	ID=gene958;Name=Y_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04815;old_locus_tag=y0915
NC_004088.1	Protein Homology	CDS	1029974	1030315	.	-	0	ID=cds909;Parent=gene958;Dbxref=Genbank:WP_002208752.1;Name=WP_002208752.1;Note=required for high salt suppression of motility;gbkey=CDS;product=lipoprotein;protein_id=WP_002208752.1;transl_table=11
NC_004088.1	RefSeq	gene	1030377	1031732	.	-	.	ID=gene959;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=Y_RS04820;old_locus_tag=y0916
NC_004088.1	Protein Homology	CDS	1030377	1031732	.	-	0	ID=cds910;Parent=gene959;Dbxref=Genbank:WP_002208751.1;Name=WP_002208751.1;Note=catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine%3B bounds to the ribosome;gbkey=CDS;gene=pssA;product=phosphatidylserine synthase;protein_id=WP_002208751.1;transl_table=11
NC_004088.1	RefSeq	gene	1031908	1034550	.	-	.	ID=gene960;Name=Y_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04825;old_locus_tag=y0917
NC_004088.1	Protein Homology	CDS	1031908	1034550	.	-	0	ID=cds911;Parent=gene960;Dbxref=Genbank:WP_002223249.1;Name=WP_002223249.1;Note=catalyzes the acetylation of lysine;gbkey=CDS;product=protein lysine acetyltransferase;protein_id=WP_002223249.1;transl_table=11
NC_004088.1	RefSeq	gene	1034593	1035342	.	-	.	ID=gene961;Name=Y_RS04830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04830;old_locus_tag=y0918
NC_004088.1	Protein Homology	CDS	1034593	1035342	.	-	0	ID=cds912;Parent=gene961;Dbxref=Genbank:WP_002208749.1;Name=WP_002208749.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208749.1;transl_table=11
NC_004088.1	RefSeq	gene	1035512	1035949	.	-	.	ID=gene962;Name=Y_RS04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04835;old_locus_tag=y0919
NC_004088.1	Protein Homology	CDS	1035512	1035949	.	-	0	ID=cds913;Parent=gene962;Dbxref=Genbank:WP_002216643.1;Name=WP_002216643.1;gbkey=CDS;product=thioredoxin;protein_id=WP_002216643.1;transl_table=11
NC_004088.1	RefSeq	gene	1036201	1037367	.	+	.	ID=gene963;Name=Y_RS04840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04840;old_locus_tag=y0920
NC_004088.1	Protein Homology	CDS	1036201	1037367	.	+	0	ID=cds914;Parent=gene963;Dbxref=Genbank:WP_002208747.1;Name=WP_002208747.1;gbkey=CDS;product=methyltransferase;protein_id=WP_002208747.1;transl_table=11
NC_004088.1	RefSeq	gene	1037490	1039025	.	-	.	ID=gene964;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=Y_RS04845;old_locus_tag=y0921
NC_004088.1	Protein Homology	CDS	1037490	1039025	.	-	0	ID=cds915;Parent=gene964;Dbxref=Genbank:WP_002208746.1;Name=WP_002208746.1;Note=multidrug MFS transporte%3B with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid;gbkey=CDS;gene=emrB;product=multidrug effux MFS transporter subunit EmrB;protein_id=WP_002208746.1;transl_table=11
NC_004088.1	RefSeq	gene	1039064	1040236	.	-	.	ID=gene965;Name=Y_RS04850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04850;old_locus_tag=y0922
NC_004088.1	Protein Homology	CDS	1039064	1040236	.	-	0	ID=cds916;Parent=gene965;Dbxref=Genbank:WP_002208745.1;Name=WP_002208745.1;Note=with ErmA and TolC forms a multidrug efflux system;gbkey=CDS;product=multidrug resistance protein A;protein_id=WP_002208745.1;transl_table=11
NC_004088.1	RefSeq	gene	1040620	1041132	.	-	.	ID=gene966;Name=Y_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04855;old_locus_tag=y0923
NC_004088.1	Protein Homology	CDS	1040620	1041132	.	-	0	ID=cds917;Parent=gene966;Dbxref=Genbank:WP_002208744.1;Name=WP_002208744.1;Note=DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux%3B negative regulator of the multidrug operon emrAB;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208744.1;transl_table=11
NC_004088.1	RefSeq	gene	1041304	1041645	.	-	.	ID=gene967;Name=Y_RS04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04860;old_locus_tag=y0924
NC_004088.1	Protein Homology	CDS	1041304	1041645	.	-	0	ID=cds918;Parent=gene967;Dbxref=Genbank:WP_002208743.1;Name=WP_002208743.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_002208743.1;transl_table=11
NC_004088.1	RefSeq	gene	1041642	1042415	.	-	.	ID=gene968;Name=Y_RS04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04865;old_locus_tag=y0925
NC_004088.1	Protein Homology	CDS	1041642	1042415	.	-	0	ID=cds919;Parent=gene968;Dbxref=Genbank:WP_002208742.1;Name=WP_002208742.1;gbkey=CDS;product=amino acid transporter;protein_id=WP_002208742.1;transl_table=11
NC_004088.1	RefSeq	gene	1042575	1043774	.	-	.	ID=gene969;Name=Y_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04870;old_locus_tag=y0926
NC_004088.1	Protein Homology	CDS	1042575	1043774	.	-	0	ID=cds920;Parent=gene969;Dbxref=Genbank:WP_002208741.1;Name=WP_002208741.1;gbkey=CDS;product=sugar transporter;protein_id=WP_002208741.1;transl_table=11
NC_004088.1	RefSeq	gene	1044002	1044388	.	-	.	ID=gene970;Name=Y_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04875;old_locus_tag=y0927
NC_004088.1	Protein Homology	CDS	1044002	1044388	.	-	0	ID=cds921;Parent=gene970;Dbxref=Genbank:WP_002264506.1;Name=WP_002264506.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002264506.1;transl_table=11
NC_004088.1	RefSeq	gene	1044498	1045895	.	-	.	ID=gene971;Name=Y_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04880;old_locus_tag=y0928
NC_004088.1	Protein Homology	CDS	1044498	1045895	.	-	0	ID=cds922;Parent=gene971;Dbxref=Genbank:WP_002208739.1;Name=WP_002208739.1;Note=catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia;gbkey=CDS;product=amidase;protein_id=WP_002208739.1;transl_table=11
NC_004088.1	RefSeq	gene	1045892	1046095	.	-	.	ID=gene972;Name=Y_RS04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04885;old_locus_tag=y0929
NC_004088.1	Protein Homology	CDS	1045892	1046095	.	-	0	ID=cds923;Parent=gene972;Dbxref=Genbank:WP_002208738.1;Name=WP_002208738.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208738.1;transl_table=11
NC_004088.1	RefSeq	gene	1046405	1047238	.	+	.	ID=gene973;Name=Y_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04890;old_locus_tag=y0931
NC_004088.1	Protein Homology	CDS	1046405	1047238	.	+	0	ID=cds924;Parent=gene973;Dbxref=Genbank:WP_002208736.1;Name=WP_002208736.1;gbkey=CDS;product=RpiR family transcriptional regulator;protein_id=WP_002208736.1;transl_table=11
NC_004088.1	RefSeq	gene	1047240	1047455	.	+	.	ID=gene974;Name=Y_RS04895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04895
NC_004088.1	Protein Homology	CDS	1047240	1047455	.	+	0	ID=cds925;Parent=gene974;Dbxref=Genbank:WP_002215957.1;Name=WP_002215957.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215957.1;transl_table=11
NC_004088.1	RefSeq	gene	1047566	1048354	.	+	.	ID=gene975;Name=Y_RS04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04900;old_locus_tag=y0932
NC_004088.1	Protein Homology	CDS	1047566	1048354	.	+	0	ID=cds926;Parent=gene975;Dbxref=Genbank:WP_002208735.1;Name=WP_002208735.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_002208735.1;transl_table=11
NC_004088.1	RefSeq	gene	1048367	1049035	.	+	.	ID=gene976;Name=Y_RS04905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04905;old_locus_tag=y0933
NC_004088.1	Protein Homology	CDS	1048367	1049035	.	+	0	ID=cds927;Parent=gene976;Dbxref=Genbank:WP_002208734.1;Name=WP_002208734.1;gbkey=CDS;product=polar amino acid ABC transporter permease;protein_id=WP_002208734.1;transl_table=11
NC_004088.1	RefSeq	gene	1049032	1049685	.	+	.	ID=gene977;Name=Y_RS04910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04910;old_locus_tag=y0934
NC_004088.1	Protein Homology	CDS	1049032	1049685	.	+	0	ID=cds928;Parent=gene977;Dbxref=Genbank:WP_002208733.1;Name=WP_002208733.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_002208733.1;transl_table=11
NC_004088.1	RefSeq	gene	1049666	1050412	.	+	.	ID=gene978;Name=Y_RS04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04915;old_locus_tag=y0935
NC_004088.1	Protein Homology	CDS	1049666	1050412	.	+	0	ID=cds929;Parent=gene978;Dbxref=Genbank:WP_002208732.1;Name=WP_002208732.1;gbkey=CDS;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_002208732.1;transl_table=11
NC_004088.1	RefSeq	gene	1050444	1051367	.	+	.	ID=gene979;Name=Y_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04920
NC_004088.1	Protein Homology	CDS	1050444	1051367	.	+	0	ID=cds930;Parent=gene979;Dbxref=Genbank:WP_002208731.1;Name=WP_002208731.1;gbkey=CDS;product=purine catabolism protein PucG;protein_id=WP_002208731.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1051350	1053308	.	+	.	ID=id138;gbkey=repeat_region
NC_004088.1	RefSeq	region	1051352	1053305	.	-	.	ID=id139;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1051418	1052197	.	-	.	ID=gene980;Name=Y_RS04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04925;old_locus_tag=y0936
NC_004088.1	Protein Homology	CDS	1051418	1052197	.	-	0	ID=cds931;Parent=gene980;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	1052197	1053219	.	-	.	ID=gene981;Name=Y_RS04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04930;old_locus_tag=y0937
NC_004088.1	Protein Homology	CDS	1052197	1053219	.	-	0	ID=cds932;Parent=gene981;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	1053323	1053748	.	+	.	ID=gene982;Name=Y_RS04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04935
NC_004088.1	Protein Homology	CDS	1053323	1053748	.	+	0	ID=cds933;Parent=gene982;Dbxref=Genbank:WP_002374260.1;Name=WP_002374260.1;gbkey=CDS;product=aminotransferase V;protein_id=WP_002374260.1;transl_table=11
NC_004088.1	RefSeq	gene	1053748	1055040	.	+	.	ID=gene983;Name=Y_RS04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04940;old_locus_tag=y0939
NC_004088.1	Protein Homology	CDS	1053748	1055040	.	+	0	ID=cds934;Parent=gene983;Dbxref=Genbank:WP_002208729.1;Name=WP_002208729.1;gbkey=CDS;product=allantoate amidohydrolase;protein_id=WP_002208729.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1055223	1055402	.	+	.	ID=id140;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1056129	1057919	.	+	.	ID=gene984;Name=Y_RS04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04945;old_locus_tag=y0941
NC_004088.1	Protein Homology	CDS	1056129	1057919	.	+	0	ID=cds935;Parent=gene984;Dbxref=Genbank:WP_002214693.1;Name=WP_002214693.1;gbkey=CDS;product=hemolysin secretion protein ShlB;protein_id=WP_002214693.1;transl_table=11
NC_004088.1	RefSeq	gene	1057960	1059120	.	+	.	ID=gene985;Name=Y_RS04950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04950;old_locus_tag=y0942
NC_004088.1	Protein Homology	CDS	1057960	1059120	.	+	0	ID=cds936;Parent=gene985;Dbxref=Genbank:WP_002228333.1;Name=WP_002228333.1;gbkey=CDS;product=adhesin;protein_id=WP_002228333.1;transl_table=11
NC_004088.1	RefSeq	gene	1059849	1063694	.	+	.	ID=gene986;Name=Y_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04955;old_locus_tag=y0943
NC_004088.1	Protein Homology	CDS	1059849	1063694	.	+	0	ID=cds937;Parent=gene986;Dbxref=Genbank:WP_025470848.1;Name=WP_025470848.1;gbkey=CDS;product=adhesin;protein_id=WP_025470848.1;transl_table=11
NC_004088.1	RefSeq	gene	1063849	1065702	.	+	.	ID=gene987;Name=Y_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04960;old_locus_tag=y0944
NC_004088.1	Protein Homology	CDS	1063849	1065702	.	+	0	ID=cds938;Parent=gene987;Dbxref=Genbank:WP_002208722.1;Name=WP_002208722.1;gbkey=CDS;product=glycosyltransferase;protein_id=WP_002208722.1;transl_table=11
NC_004088.1	RefSeq	gene	1065704	1066450	.	+	.	ID=gene988;Name=Y_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04965;old_locus_tag=y0945
NC_004088.1	Protein Homology	CDS	1065704	1066450	.	+	0	ID=cds939;Parent=gene988;Dbxref=Genbank:WP_002208721.1;Name=WP_002208721.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208721.1;transl_table=11
NC_004088.1	RefSeq	gene	1066622	1069069	.	-	.	ID=gene989;Name=fadE;gbkey=Gene;gene=fadE;gene_biotype=protein_coding;locus_tag=Y_RS04970;old_locus_tag=y0946
NC_004088.1	Protein Homology	CDS	1066622	1069069	.	-	0	ID=cds940;Parent=gene989;Dbxref=Genbank:WP_002214691.1;Name=WP_002214691.1;Note=functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA;gbkey=CDS;gene=fadE;product=acyl-CoA dehydrogenase;protein_id=WP_002214691.1;transl_table=11
NC_004088.1	RefSeq	gene	1069309	1069890	.	+	.	ID=gene990;Name=gmhA;gbkey=Gene;gene=gmhA;gene_biotype=protein_coding;locus_tag=Y_RS04975;old_locus_tag=y0947
NC_004088.1	Protein Homology	CDS	1069309	1069890	.	+	0	ID=cds941;Parent=gene990;Dbxref=Genbank:WP_002208720.1;Name=WP_002208720.1;Note=catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate;gbkey=CDS;gene=gmhA;product=phosphoheptose isomerase;protein_id=WP_002208720.1;transl_table=11
NC_004088.1	RefSeq	gene	1070093	1070866	.	+	.	ID=gene991;Name=Y_RS04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04980;old_locus_tag=y0948
NC_004088.1	Protein Homology	CDS	1070093	1070866	.	+	0	ID=cds942;Parent=gene991;Dbxref=Genbank:WP_002208719.1;Name=WP_002208719.1;gbkey=CDS;product=glutamine amidotransferase;protein_id=WP_002208719.1;transl_table=11
NC_004088.1	RefSeq	gene	1070831	1071493	.	-	.	ID=gene992;Name=Y_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04985;old_locus_tag=y0949
NC_004088.1	Protein Homology	CDS	1070831	1071493	.	-	0	ID=cds943;Parent=gene992;Dbxref=Genbank:WP_002228335.1;Name=WP_002228335.1;gbkey=CDS;product=transpeptidase;protein_id=WP_002228335.1;transl_table=11
NC_004088.1	RefSeq	gene	1072083	1073426	.	+	.	ID=gene993;Name=Y_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04990;old_locus_tag=y0951
NC_004088.1	Protein Homology	CDS	1072083	1073426	.	+	0	ID=cds944;Parent=gene993;Dbxref=Genbank:WP_002208717.1;Name=WP_002208717.1;Note=uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm;gbkey=CDS;product=Na+-translocating NADH-quinone reductase subunit A;protein_id=WP_002208717.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	1072446	1072464	.	+	.	ID=id141;Dbxref=CollecTF:EXPSITE_00000c60;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y0951;gbkey=protein_bind
NC_004088.1	RefSeq	gene	1073430	1074671	.	+	.	ID=gene994;Name=Y_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS04995;old_locus_tag=y0952
NC_004088.1	Protein Homology	CDS	1073430	1074671	.	+	0	ID=cds945;Parent=gene994;Dbxref=Genbank:WP_002208716.1;Name=WP_002208716.1;Note=uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm;gbkey=CDS;product=Na+-translocating NADH-quinone reductase subunit B;protein_id=WP_002208716.1;transl_table=11
NC_004088.1	RefSeq	gene	1074661	1075461	.	+	.	ID=gene995;Name=Y_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05000;old_locus_tag=y0953
NC_004088.1	Protein Homology	CDS	1074661	1075461	.	+	0	ID=cds946;Parent=gene995;Dbxref=Genbank:WP_002208715.1;Name=WP_002208715.1;Note=uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm;gbkey=CDS;product=Na+-translocating NADH-quinone reductase subunit C;protein_id=WP_002208715.1;transl_table=11
NC_004088.1	RefSeq	gene	1075454	1076083	.	+	.	ID=gene996;Name=Y_RS05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05005;old_locus_tag=y0954
NC_004088.1	Protein Homology	CDS	1075454	1076083	.	+	0	ID=cds947;Parent=gene996;Dbxref=Genbank:WP_002208714.1;Name=WP_002208714.1;Note=Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm;gbkey=CDS;product=NADH-quinone reductase subunit D;protein_id=WP_002208714.1;transl_table=11
NC_004088.1	RefSeq	gene	1076090	1076686	.	+	.	ID=gene997;Name=Y_RS05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05010;old_locus_tag=y0955
NC_004088.1	Protein Homology	CDS	1076090	1076686	.	+	0	ID=cds948;Parent=gene997;Dbxref=Genbank:WP_002208713.1;Name=WP_002208713.1;Note=Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol.;gbkey=CDS;product=Na+-translocating NADH-quinone reductase subunit E;protein_id=WP_002208713.1;transl_table=11
NC_004088.1	RefSeq	gene	1076702	1077925	.	+	.	ID=gene998;Name=Y_RS05015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05015;old_locus_tag=y0956
NC_004088.1	Protein Homology	CDS	1076702	1077925	.	+	0	ID=cds949;Parent=gene998;Dbxref=Genbank:WP_002208711.1;Name=WP_002208711.1;Note=uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm;gbkey=CDS;product=Na+-translocating NADH-quinone reductase subunit F;protein_id=WP_002208711.1;transl_table=11
NC_004088.1	RefSeq	gene	1077993	1078988	.	+	.	ID=gene999;Name=Y_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05020;old_locus_tag=y0957
NC_004088.1	Protein Homology	CDS	1077993	1078988	.	+	0	ID=cds950;Parent=gene999;Dbxref=Genbank:WP_002208710.1;Name=WP_002208710.1;gbkey=CDS;product=thiamine biosynthesis lipoprotein ApbE;protein_id=WP_002208710.1;transl_table=11
NC_004088.1	RefSeq	gene	1079001	1079228	.	+	.	ID=gene1000;Name=Y_RS05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05025
NC_004088.1	Protein Homology	CDS	1079001	1079228	.	+	0	ID=cds951;Parent=gene1000;Dbxref=Genbank:WP_002214684.1;Name=WP_002214684.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214684.1;transl_table=11
NC_004088.1	RefSeq	gene	1079472	1080419	.	-	.	ID=gene1001;Name=Y_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05030;old_locus_tag=y0958
NC_004088.1	Protein Homology	CDS	1079472	1080419	.	-	0	ID=cds952;Parent=gene1001;Dbxref=Genbank:WP_002208709.1;Name=WP_002208709.1;gbkey=CDS;product=glycerophosphoryl diester phosphodiesterase;protein_id=WP_002208709.1;transl_table=11
NC_004088.1	RefSeq	gene	1080775	1081833	.	+	.	ID=gene1002;Name=Y_RS05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05035;old_locus_tag=y0959
NC_004088.1	Protein Homology	CDS	1080775	1081833	.	+	0	ID=cds953;Parent=gene1002;Dbxref=Genbank:WP_002232156.1;Name=WP_002232156.1;Note=involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function;gbkey=CDS;product=DNA polymerase IV;protein_id=WP_002232156.1;transl_table=11
NC_004088.1	RefSeq	gene	1081947	1083407	.	-	.	ID=gene1003;Name=Y_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05040;old_locus_tag=y0960
NC_004088.1	Protein Homology	CDS	1081947	1083407	.	-	0	ID=cds954;Parent=gene1003;Dbxref=Genbank:WP_002208707.1;Name=WP_002208707.1;Note=catalyzes the hydrolysis of Xaa-His dipeptides;gbkey=CDS;product=aminoacyl-histidine dipeptidase;protein_id=WP_002208707.1;transl_table=11
NC_004088.1	RefSeq	gene	1084405	1084560	.	+	.	ID=gene1004;Name=Y_RS05045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05045
NC_004088.1	Protein Homology	CDS	1084405	1084560	.	+	0	ID=cds955;Parent=gene1004;Dbxref=Genbank:WP_002216045.1;Name=WP_002216045.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216045.1;transl_table=11
NC_004088.1	RefSeq	gene	1085408	1086193	.	+	.	ID=gene1005;Name=Y_RS05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05050;old_locus_tag=y0961
NC_004088.1	Protein Homology	CDS	1085408	1086193	.	+	0	ID=cds956;Parent=gene1005;Dbxref=Genbank:WP_002208706.1;Name=WP_002208706.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002208706.1;transl_table=11
NC_004088.1	RefSeq	gene	1086653	1088257	.	-	.	ID=gene1006;Name=Y_RS05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05055;old_locus_tag=y0962
NC_004088.1	Protein Homology	CDS	1086653	1088257	.	-	0	ID=cds957;Parent=gene1006;Dbxref=Genbank:WP_011055332.1;Name=WP_011055332.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011055332.1;transl_table=11
NC_004088.1	RefSeq	gene	1088454	1088759	.	-	.	ID=gene1007;Name=Y_RS05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05060
NC_004088.1	Protein Homology	CDS	1088454	1088759	.	-	0	ID=cds958;Parent=gene1007;Dbxref=Genbank:WP_002216043.1;Name=WP_002216043.1;gbkey=CDS;product=holin;protein_id=WP_002216043.1;transl_table=11
NC_004088.1	RefSeq	gene	1089186	1089644	.	+	.	ID=gene1008;Name=Y_RS05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05065;old_locus_tag=y0963
NC_004088.1	Protein Homology	CDS	1089186	1089644	.	+	0	ID=cds959;Parent=gene1008;Dbxref=Genbank:WP_002208704.1;Name=WP_002208704.1;Note=catalyzes the conversion of guanine%2C xanthine and%2C to a lesser extent%2C hypoxanthine to GMP%2C XMP and IMP%2C respectively;gbkey=CDS;product=xanthine phosphoribosyltransferase;protein_id=WP_002208704.1;transl_table=11
NC_004088.1	RefSeq	gene	1089771	1091018	.	+	.	ID=gene1009;Name=frsA;gbkey=Gene;gene=frsA;gene_biotype=protein_coding;locus_tag=Y_RS05070;old_locus_tag=y0964
NC_004088.1	Protein Homology	CDS	1089771	1091018	.	+	0	ID=cds960;Parent=gene1009;Dbxref=Genbank:WP_002208703.1;Name=WP_002208703.1;Note=forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc%3B FrsA may promote fermentation;gbkey=CDS;gene=frsA;product=fermentation/respiration switch protein;protein_id=WP_002208703.1;transl_table=11
NC_004088.1	RefSeq	gene	1091078	1091479	.	+	.	ID=gene1010;Name=Y_RS05075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05075;old_locus_tag=y0965
NC_004088.1	Protein Homology	CDS	1091078	1091479	.	+	0	ID=cds961;Parent=gene1010;Dbxref=Genbank:WP_002208702.1;Name=WP_002208702.1;gbkey=CDS;product=sigma factor-binding protein Crl;protein_id=WP_002208702.1;transl_table=11
NC_004088.1	RefSeq	gene	1091656	1092759	.	+	.	ID=gene1011;Name=Y_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05080;old_locus_tag=y0966
NC_004088.1	Protein Homology	CDS	1091656	1092759	.	+	0	ID=cds962;Parent=gene1011;Dbxref=Genbank:WP_002208701.1;Name=WP_002208701.1;gbkey=CDS;product=glutamate 5-kinase;protein_id=WP_002208701.1;transl_table=11
NC_004088.1	RefSeq	gene	1092769	1094028	.	+	.	ID=gene1012;Name=Y_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05085;old_locus_tag=y0967
NC_004088.1	Protein Homology	CDS	1092769	1094028	.	+	0	ID=cds963;Parent=gene1012;Dbxref=Genbank:WP_002208700.1;Name=WP_002208700.1;gbkey=CDS;product=gamma-glutamyl phosphate reductase;protein_id=WP_002208700.1;transl_table=11
NC_004088.1	RefSeq	gene	1094365	1095114	.	+	.	ID=gene1013;Name=Y_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05090;old_locus_tag=y0968
NC_004088.1	Protein Homology	CDS	1094365	1095114	.	+	0	ID=cds964;Parent=gene1013;Dbxref=Genbank:WP_002264519.1;Name=WP_002264519.1;gbkey=CDS;product=flagellar brake protein YcgR;protein_id=WP_002264519.1;transl_table=11
NC_004088.1	RefSeq	gene	1095312	1095566	.	+	.	ID=gene1014;Name=Y_RS05095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05095;old_locus_tag=y0969
NC_004088.1	Protein Homology	CDS	1095312	1095566	.	+	0	ID=cds965;Parent=gene1014;Dbxref=Genbank:WP_002208698.1;Name=WP_002208698.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208698.1;transl_table=11
NC_004088.1	RefSeq	gene	1095770	1096333	.	+	.	ID=gene1015;Name=Y_RS05100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS05100;old_locus_tag=y0970;partial=true;pseudo=true;start_range=.,1095770
NC_004088.1	Protein Homology	CDS	1095770	1096333	.	+	0	ID=cds966;Parent=gene1015;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=SAM-dependent methyltransferase;pseudo=true;start_range=.,1095770;transl_table=11
NC_004088.1	RefSeq	gene	1096580	1096795	.	-	.	ID=gene1016;Name=Y_RS05105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05105
NC_004088.1	Protein Homology	CDS	1096580	1096795	.	-	0	ID=cds967;Parent=gene1016;Dbxref=Genbank:WP_002215536.1;Name=WP_002215536.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215536.1;transl_table=11
NC_004088.1	RefSeq	gene	1097063	1097620	.	+	.	ID=gene1017;Name=Y_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05110;old_locus_tag=y0971
NC_004088.1	Protein Homology	CDS	1097063	1097620	.	+	0	ID=cds968;Parent=gene1017;Dbxref=Genbank:WP_002208694.1;Name=WP_002208694.1;gbkey=CDS;product=methyltransferase;protein_id=WP_002208694.1;transl_table=11
NC_004088.1	RefSeq	gene	1097867	1098391	.	+	.	ID=gene1018;Name=Y_RS05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05115;old_locus_tag=y0972
NC_004088.1	Protein Homology	CDS	1097867	1098391	.	+	0	ID=cds969;Parent=gene1018;Dbxref=Genbank:WP_002208693.1;Name=WP_002208693.1;gbkey=CDS;product=shikimate kinase;protein_id=WP_002208693.1;transl_table=11
NC_004088.1	RefSeq	gene	1098647	1098817	.	+	.	ID=gene1019;Name=Y_RS05120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05120
NC_004088.1	Protein Homology	CDS	1098647	1098817	.	+	0	ID=cds970;Parent=gene1019;Dbxref=Genbank:WP_002215533.1;Name=WP_002215533.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215533.1;transl_table=11
NC_004088.1	RefSeq	gene	1098881	1099168	.	+	.	ID=gene1020;Name=Y_RS05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05125;old_locus_tag=y0973
NC_004088.1	Protein Homology	CDS	1098881	1099168	.	+	0	ID=cds971;Parent=gene1020;Dbxref=Genbank:WP_002208692.1;Name=WP_002208692.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208692.1;transl_table=11
NC_004088.1	RefSeq	gene	1099404	1100315	.	-	.	ID=gene1021;Name=Y_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05130;old_locus_tag=y0974
NC_004088.1	Protein Homology	CDS	1099404	1100315	.	-	0	ID=cds972;Parent=gene1021;Dbxref=Genbank:WP_002208691.1;Name=WP_002208691.1;Note=Required for efficient pilin antigenic variation;gbkey=CDS;product=recombination-associated protein RdgC;protein_id=WP_002208691.1;transl_table=11
NC_004088.1	RefSeq	gene	1100648	1101562	.	+	.	ID=gene1022;Name=Y_RS05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05135;old_locus_tag=y0975
NC_004088.1	Protein Homology	CDS	1100648	1101562	.	+	0	ID=cds973;Parent=gene1022;Dbxref=Genbank:WP_002208690.1;Name=WP_002208690.1;Note=catalyzes phosphorylation of fructose%3B cytosolic enzyme;gbkey=CDS;product=fructokinase;protein_id=WP_002208690.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1101638	1101762	.	+	.	ID=id142;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	1101771	1101895	.	+	.	ID=id143;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1102023	1105712	.	-	.	ID=gene1023;Name=Y_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05140;old_locus_tag=y0976
NC_004088.1	Protein Homology	CDS	1102023	1105712	.	-	0	ID=cds974;Parent=gene1023;Dbxref=Genbank:WP_002223265.1;Name=WP_002223265.1;gbkey=CDS;product=ATP-dependent dsDNA exonuclease;protein_id=WP_002223265.1;transl_table=11
NC_004088.1	RefSeq	gene	1105709	1106953	.	-	.	ID=gene1024;Name=Y_RS05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05145;old_locus_tag=y0977
NC_004088.1	Protein Homology	CDS	1105709	1106953	.	-	0	ID=cds975;Parent=gene1024;Dbxref=Genbank:WP_002208687.1;Name=WP_002208687.1;Note=with SbcC cleaves DNA hairpin structure%2C also has 5' single-strand endonuclease activity;gbkey=CDS;product=exonuclease SbcD;protein_id=WP_002208687.1;transl_table=11
NC_004088.1	RefSeq	gene	1107072	1107191	.	+	.	ID=gene1025;Name=Y_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05150
NC_004088.1	Protein Homology	CDS	1107072	1107191	.	+	0	ID=cds976;Parent=gene1025;Dbxref=Genbank:WP_002208686.1;Name=WP_002208686.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208686.1;transl_table=11
NC_004088.1	RefSeq	gene	1107221	1107910	.	+	.	ID=gene1026;Name=Y_RS05155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05155;old_locus_tag=y0978
NC_004088.1	Protein Homology	CDS	1107221	1107910	.	+	0	ID=cds977;Parent=gene1026;Dbxref=Genbank:WP_002208685.1;Name=WP_002208685.1;Note=two component response regulator for the phosphate regulon%3B PhoR phosphorylates PhoB;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002208685.1;transl_table=11
NC_004088.1	RefSeq	gene	1107935	1109251	.	+	.	ID=gene1027;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=Y_RS05160;old_locus_tag=y0979
NC_004088.1	Protein Homology	CDS	1107935	1109251	.	+	0	ID=cds978;Parent=gene1027;Dbxref=Genbank:WP_002208684.1;Name=WP_002208684.1;Note=membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB;gbkey=CDS;gene=phoR;product=phosphate regulon sensor protein;protein_id=WP_002208684.1;transl_table=11
NC_004088.1	RefSeq	gene	1109273	1110337	.	+	.	ID=gene1028;Name=Y_RS05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05165;old_locus_tag=y0980
NC_004088.1	Protein Homology	CDS	1109273	1110337	.	+	0	ID=cds979;Parent=gene1028;Dbxref=Genbank:WP_002215524.1;Name=WP_002215524.1;gbkey=CDS;product=phosphate ABC transporter substrate-binding protein;protein_id=WP_002215524.1;transl_table=11
NC_004088.1	RefSeq	gene	1110811	1112130	.	+	.	ID=gene1029;Name=Y_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05170;old_locus_tag=y0981
NC_004088.1	Protein Homology	CDS	1110811	1112130	.	+	0	ID=cds980;Parent=gene1029;Dbxref=Genbank:WP_002208680.1;Name=WP_002208680.1;Note=sodium:branched-chain amino acid symporter;gbkey=CDS;product=branched-chain amino acid transporter 2 carrier protein BrnQ;protein_id=WP_002208680.1;transl_table=11
NC_004088.1	RefSeq	gene	1112206	1113597	.	+	.	ID=gene1030;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=Y_RS05175;old_locus_tag=y0982
NC_004088.1	Protein Homology	CDS	1112206	1113597	.	+	0	ID=cds981;Parent=gene1030;Dbxref=Genbank:WP_002223269.1;Name=WP_002223269.1;Note=cryptic permease that may be involved in the transport of proline across the inner membrane%3B in Salmonella typhimurium%2C the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation;gbkey=CDS;gene=proY;product=permease;protein_id=WP_002223269.1;transl_table=11
NC_004088.1	RefSeq	gene	1114158	1115987	.	+	.	ID=gene1031;Name=Y_RS05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05180;old_locus_tag=y0983
NC_004088.1	Protein Homology	CDS	1114158	1115987	.	+	0	ID=cds982;Parent=gene1031;Dbxref=Genbank:WP_002208678.1;Name=WP_002208678.1;gbkey=CDS;product=maltodextrin glucosidase;protein_id=WP_002208678.1;transl_table=11
NC_004088.1	RefSeq	gene	1116142	1116822	.	+	.	ID=gene1032;Name=Y_RS05185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05185;old_locus_tag=y0984
NC_004088.1	Protein Homology	CDS	1116142	1116822	.	+	0	ID=cds983;Parent=gene1032;Dbxref=Genbank:WP_002208677.1;Name=WP_002208677.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_002208677.1;transl_table=11
NC_004088.1	RefSeq	gene	1117030	1118544	.	-	.	ID=gene1033;Name=Y_RS05190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05190;old_locus_tag=y0985
NC_004088.1	Protein Homology	CDS	1117030	1118544	.	-	0	ID=cds984;Parent=gene1033;Dbxref=Genbank:WP_002216937.1;Name=WP_002216937.1;gbkey=CDS;product=gamma-glutamyltransferase;protein_id=WP_002216937.1;transl_table=11
NC_004088.1	RefSeq	gene	1118541	1118795	.	-	.	ID=gene1034;Name=Y_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05195;old_locus_tag=y0986
NC_004088.1	Protein Homology	CDS	1118541	1118795	.	-	0	ID=cds985;Parent=gene1034;Dbxref=Genbank:WP_002216934.1;Name=WP_002216934.1;gbkey=CDS;product=gamma-glutamyltranspeptidase;protein_id=WP_002216934.1;transl_table=11
NC_004088.1	RefSeq	gene	1118964	1119095	.	+	.	ID=gene1035;Name=Y_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05200
NC_004088.1	Protein Homology	CDS	1118964	1119095	.	+	0	ID=cds986;Parent=gene1035;Dbxref=Genbank:WP_002216930.1;Name=WP_002216930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216930.1;transl_table=11
NC_004088.1	RefSeq	gene	1119184	1119786	.	-	.	ID=gene1036;Name=Y_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05205;old_locus_tag=y0988
NC_004088.1	Protein Homology	CDS	1119184	1119786	.	-	0	ID=cds987;Parent=gene1036;Dbxref=Genbank:WP_002208675.1;Name=WP_002208675.1;gbkey=CDS;product=peroxiredoxin;protein_id=WP_002208675.1;transl_table=11
NC_004088.1	RefSeq	gene	1120085	1120666	.	-	.	ID=gene1037;Name=Y_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05210;old_locus_tag=y0989
NC_004088.1	Protein Homology	CDS	1120085	1120666	.	-	0	ID=cds988;Parent=gene1037;Dbxref=Genbank:WP_002216927.1;Name=WP_002216927.1;Note=Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP;gbkey=CDS;product=ACP phosphodiesterase;protein_id=WP_002216927.1;transl_table=11
NC_004088.1	RefSeq	gene	1120869	1121939	.	+	.	ID=gene1038;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=Y_RS05215;old_locus_tag=y0990
NC_004088.1	Protein Homology	CDS	1120869	1121939	.	+	0	ID=cds989;Parent=gene1038;Dbxref=Genbank:WP_002208673.1;Name=WP_002208673.1;Note=Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step;gbkey=CDS;gene=queA;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=WP_002208673.1;transl_table=11
NC_004088.1	RefSeq	gene	1122032	1123156	.	+	.	ID=gene1039;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=Y_RS05220;old_locus_tag=y0991
NC_004088.1	Protein Homology	CDS	1122032	1123156	.	+	0	ID=cds990;Parent=gene1039;Dbxref=Genbank:WP_002208672.1;Name=WP_002208672.1;Note=Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr);gbkey=CDS;gene=tgt;product=queuine tRNA-ribosyltransferase;protein_id=WP_002208672.1;transl_table=11
NC_004088.1	RefSeq	gene	1123268	1123603	.	+	.	ID=gene1040;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=Y_RS05225;old_locus_tag=y0992
NC_004088.1	Protein Homology	CDS	1123268	1123603	.	+	0	ID=cds991;Parent=gene1040;Dbxref=Genbank:WP_002208671.1;Name=WP_002208671.1;Note=member of preprotein translocase%3B forms a heterotrimer with SecD and SecF%3B links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex;gbkey=CDS;gene=yajC;product=preprotein translocase subunit YajC;protein_id=WP_002208671.1;transl_table=11
NC_004088.1	RefSeq	gene	1123664	1125478	.	+	.	ID=gene1041;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=Y_RS05230;old_locus_tag=y0993
NC_004088.1	Protein Homology	CDS	1123664	1125478	.	+	0	ID=cds992;Parent=gene1041;Dbxref=Genbank:WP_032486127.1;Name=WP_032486127.1;Note=part of the preprotein secretory system%3B when complexed with proteins SecF and YajC%2C SecDFyajC stimulates the proton motive force-driven protein translocation%2C and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane;gbkey=CDS;gene=secD;product=preprotein translocase subunit SecD;protein_id=WP_032486127.1;transl_table=11
NC_004088.1	RefSeq	gene	1125489	1126457	.	+	.	ID=gene1042;Name=Y_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05235;old_locus_tag=y0994
NC_004088.1	Protein Homology	CDS	1125489	1126457	.	+	0	ID=cds993;Parent=gene1042;Dbxref=Genbank:WP_002208669.1;Name=WP_002208669.1;gbkey=CDS;product=preprotein translocase subunit SecF;protein_id=WP_002208669.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1126514	1127235	.	+	.	ID=id144;gbkey=repeat_region
NC_004088.1	RefSeq	region	1126519	1127228	.	+	.	ID=id145;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1126664	1127122	.	+	.	ID=gene1043;Name=Y_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05240;old_locus_tag=y0995
NC_004088.1	Protein Homology	CDS	1126664	1127122	.	+	0	ID=cds994;Parent=gene1043;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1127420	1128115	.	+	.	ID=gene1044;Name=Y_RS05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05245;old_locus_tag=y0997
NC_004088.1	Protein Homology	CDS	1127420	1128115	.	+	0	ID=cds995;Parent=gene1044;Dbxref=Genbank:WP_002217139.1;Name=WP_002217139.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217139.1;transl_table=11
NC_004088.1	RefSeq	gene	1128148	1128741	.	+	.	ID=gene1045;Name=Y_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05250;old_locus_tag=y0998
NC_004088.1	Protein Homology	CDS	1128148	1128741	.	+	0	ID=cds996;Parent=gene1045;Dbxref=Genbank:WP_002217141.1;Name=WP_002217141.1;gbkey=CDS;product=membrane protein;protein_id=WP_002217141.1;transl_table=11
NC_004088.1	RefSeq	gene	1128812	1129261	.	+	.	ID=gene1046;Name=Y_RS05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05255;old_locus_tag=y0999
NC_004088.1	Protein Homology	CDS	1128812	1129261	.	+	0	ID=cds997;Parent=gene1046;Dbxref=Genbank:WP_002208668.1;Name=WP_002208668.1;gbkey=CDS;product=NrdR family transcriptional regulator;protein_id=WP_002208668.1;transl_table=11
NC_004088.1	RefSeq	gene	1129411	1130520	.	+	.	ID=gene1047;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=Y_RS05260;old_locus_tag=y1000
NC_004088.1	Protein Homology	CDS	1129411	1130520	.	+	0	ID=cds998;Parent=gene1047;Dbxref=Genbank:WP_002208667.1;Name=WP_002208667.1;Note=riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway%3B catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil;gbkey=CDS;gene=ribD;product=diaminohydroxyphosphoribosylaminopyrimidine deaminase;protein_id=WP_002208667.1;transl_table=11
NC_004088.1	RefSeq	gene	1130656	1131126	.	+	.	ID=gene1048;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=Y_RS05265;old_locus_tag=y1001
NC_004088.1	Protein Homology	CDS	1130656	1131126	.	+	0	ID=cds999;Parent=gene1048;Dbxref=Genbank:WP_002208666.1;Name=WP_002208666.1;Note=RibE%3B 6%2C7-diimethyl-8-ribityllumazine synthase%3B DMRL synthase%3B lumazine synthase%3B beta subunit of riboflavin synthase%3B condenses 5-amino-6-(1'-D)-ribityl-amino-2%2C4(1H%2C3H)-pyrimidinedione with L-3%2C4-dihydrohy-2-butanone-4-phosphate to generate 6%2C6-dimethyl-8-lumazine (DMRL)%3B riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12)%3B involved in the last steps of riboflavin biosynthesis%3B forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli%3B in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not;gbkey=CDS;gene=ribH;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_002208666.1;transl_table=11
NC_004088.1	RefSeq	gene	1131147	1131563	.	+	.	ID=gene1049;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=Y_RS05270;old_locus_tag=y1002
NC_004088.1	Protein Homology	CDS	1131147	1131563	.	+	0	ID=cds1000;Parent=gene1049;Dbxref=Genbank:WP_002208665.1;Name=WP_002208665.1;Note=Regulates rRNA biosynthesis by transcriptional antitermination;gbkey=CDS;gene=nusB;product=N utilization substance protein B homolog;protein_id=WP_002208665.1;transl_table=11
NC_004088.1	RefSeq	gene	1131804	1132793	.	+	.	ID=gene1050;Name=Y_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05275;old_locus_tag=y1003
NC_004088.1	Protein Homology	CDS	1131804	1132793	.	+	0	ID=cds1001;Parent=gene1050;Dbxref=Genbank:WP_002208664.1;Name=WP_002208664.1;gbkey=CDS;product=thiamine monophosphate kinase;protein_id=WP_002208664.1;transl_table=11
NC_004088.1	RefSeq	gene	1132786	1133271	.	+	.	ID=gene1051;Name=Y_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05280;old_locus_tag=y1004
NC_004088.1	Protein Homology	CDS	1132786	1133271	.	+	0	ID=cds1002;Parent=gene1051;Dbxref=Genbank:WP_002208663.1;Name=WP_002208663.1;Note=hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate;gbkey=CDS;product=phosphatidylglycerophosphatase A;protein_id=WP_002208663.1;transl_table=11
NC_004088.1	RefSeq	region	1133340	1133387	.	+	.	ID=id146;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	repeat_region	1133387	1136014	.	+	.	ID=id147;gbkey=repeat_region
NC_004088.1	RefSeq	region	1133388	1135341	.	+	.	ID=id148;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1133474	1134496	.	+	.	ID=gene1052;Name=Y_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05285;old_locus_tag=y1005
NC_004088.1	Protein Homology	CDS	1133474	1134496	.	+	0	ID=cds1003;Parent=gene1052;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	1134496	1135275	.	+	.	ID=gene1053;Name=Y_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05290;old_locus_tag=y1006
NC_004088.1	Protein Homology	CDS	1134496	1135275	.	+	0	ID=cds1004;Parent=gene1053;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	1135314	1135454	.	+	.	ID=gene1054;Name=Y_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05295
NC_004088.1	Protein Homology	CDS	1135314	1135454	.	+	0	ID=cds1005;Parent=gene1054;Dbxref=Genbank:WP_025471121.1;Name=WP_025471121.1;gbkey=CDS;product=transposase;protein_id=WP_025471121.1;transl_table=11
NC_004088.1	RefSeq	region	1135342	1136008	.	+	.	ID=id149;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1135444	1135902	.	+	.	ID=gene1055;Name=Y_RS05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05300;old_locus_tag=y1007
NC_004088.1	Protein Homology	CDS	1135444	1135902	.	+	0	ID=cds1006;Parent=gene1055;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	1136081	1137940	.	-	.	ID=gene1056;Name=Y_RS05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05305;old_locus_tag=y1008
NC_004088.1	Protein Homology	CDS	1136081	1137940	.	-	0	ID=cds1007;Parent=gene1056;Dbxref=Genbank:WP_002208662.1;Name=WP_002208662.1;Note=catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate;gbkey=CDS;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_002208662.1;transl_table=11
NC_004088.1	RefSeq	gene	1138096	1139016	.	-	.	ID=gene1057;Name=Y_RS05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05310;old_locus_tag=y1009
NC_004088.1	Protein Homology	CDS	1138096	1139016	.	-	0	ID=cds1008;Parent=gene1057;Dbxref=Genbank:WP_002208661.1;Name=WP_002208661.1;gbkey=CDS;product=geranyltranstransferase;protein_id=WP_002208661.1;transl_table=11
NC_004088.1	RefSeq	gene	1139021	1139275	.	-	.	ID=gene1058;Name=Y_RS05315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05315;old_locus_tag=y1010
NC_004088.1	Protein Homology	CDS	1139021	1139275	.	-	0	ID=cds1009;Parent=gene1058;Dbxref=Genbank:WP_002208660.1;Name=WP_002208660.1;Note=catalyzes the bidirectional exonucleolytic cleavage of DNA;gbkey=CDS;product=exodeoxyribonuclease 7 small subunit;protein_id=WP_002208660.1;transl_table=11
NC_004088.1	RefSeq	gene	1139357	1139527	.	+	.	ID=gene1059;Name=Y_RS05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05320;old_locus_tag=y1011
NC_004088.1	Protein Homology	CDS	1139357	1139527	.	+	0	ID=cds1010;Parent=gene1059;Dbxref=Genbank:WP_002208659.1;Name=WP_002208659.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208659.1;transl_table=11
NC_004088.1	RefSeq	gene	1139625	1141076	.	+	.	ID=gene1060;Name=Y_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05325;old_locus_tag=y1012
NC_004088.1	Protein Homology	CDS	1139625	1141076	.	+	0	ID=cds1011;Parent=gene1060;Dbxref=Genbank:WP_002208658.1;Name=WP_002208658.1;Note=catalyzes the conversion of uridine to 4-thiouridinine tRNA%3B also required for the synthesis of the thiazole moiety;gbkey=CDS;product=tRNA sulfurtransferase;protein_id=WP_002208658.1;transl_table=11
NC_004088.1	RefSeq	gene	1141144	1141734	.	-	.	ID=gene1061;Name=Y_RS05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05330;old_locus_tag=y1013
NC_004088.1	Protein Homology	CDS	1141144	1141734	.	-	0	ID=cds1012;Parent=gene1061;Dbxref=Genbank:WP_002208657.1;Name=WP_002208657.1;gbkey=CDS;product=oxidative-stress-resistance chaperone;protein_id=WP_002208657.1;transl_table=11
NC_004088.1	RefSeq	gene	1141697	1142608	.	-	.	ID=gene1062;Name=Y_RS05335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05335;old_locus_tag=y1014
NC_004088.1	Protein Homology	CDS	1141697	1142608	.	-	0	ID=cds1013;Parent=gene1062;Dbxref=Genbank:WP_002208656.1;Name=WP_002208656.1;Note=ketopantoate reductase%3B catalyzes the NADPH reduction of ketopantoate to pantoate%3B functions in pantothenate (vitamin B5) biosynthesis;gbkey=CDS;product=2-dehydropantoate 2-reductase;protein_id=WP_002208656.1;transl_table=11
NC_004088.1	RefSeq	gene	1142840	1143331	.	+	.	ID=gene1063;Name=Y_RS05340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05340;old_locus_tag=y1016
NC_004088.1	Protein Homology	CDS	1142840	1143331	.	+	0	ID=cds1014;Parent=gene1063;Dbxref=Genbank:WP_002208655.1;Name=WP_002208655.1;Note=nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription;gbkey=CDS;product=nucleotide-binding protein;protein_id=WP_002208655.1;transl_table=11
NC_004088.1	RefSeq	gene	1143455	1144819	.	-	.	ID=gene1064;Name=Y_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05345;old_locus_tag=y1017
NC_004088.1	Protein Homology	CDS	1143455	1144819	.	-	0	ID=cds1015;Parent=gene1064;Dbxref=Genbank:WP_002216717.1;Name=WP_002216717.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216717.1;transl_table=11
NC_004088.1	RefSeq	gene	1145303	1146190	.	-	.	ID=gene1065;Name=Y_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05350;old_locus_tag=y1018
NC_004088.1	Protein Homology	CDS	1145303	1146190	.	-	0	ID=cds1016;Parent=gene1065;Dbxref=Genbank:WP_002208653.1;Name=WP_002208653.1;Note=converts protoheme IX and farnesyl diphosphate to heme O;gbkey=CDS;product=protoheme IX farnesyltransferase;protein_id=WP_002208653.1;transl_table=11
NC_004088.1	RefSeq	gene	1146204	1146536	.	-	.	ID=gene1066;Name=Y_RS05355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05355
NC_004088.1	Protein Homology	CDS	1146204	1146536	.	-	0	ID=cds1017;Parent=gene1066;Dbxref=Genbank:WP_002208652.1;Name=WP_002208652.1;gbkey=CDS;product=cytochrome O ubiquinol oxidase;protein_id=WP_002208652.1;transl_table=11
NC_004088.1	RefSeq	gene	1146536	1147150	.	-	.	ID=gene1067;Name=Y_RS05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05360;old_locus_tag=y1019
NC_004088.1	Protein Homology	CDS	1146536	1147150	.	-	0	ID=cds1018;Parent=gene1067;Dbxref=Genbank:WP_002208651.1;Name=WP_002208651.1;gbkey=CDS;product=cytochrome O ubiquinol oxidase;protein_id=WP_002208651.1;transl_table=11
NC_004088.1	RefSeq	gene	1147140	1149131	.	-	.	ID=gene1068;Name=Y_RS05365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05365;old_locus_tag=y1020
NC_004088.1	Protein Homology	CDS	1147140	1149131	.	-	0	ID=cds1019;Parent=gene1068;Dbxref=Genbank:WP_002208650.1;Name=WP_002208650.1;gbkey=CDS;product=cytochrome O ubiquinol oxidase subunit I;protein_id=WP_002208650.1;transl_table=11
NC_004088.1	RefSeq	gene	1149136	1150092	.	-	.	ID=gene1069;Name=Y_RS05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05370;old_locus_tag=y1021
NC_004088.1	Protein Homology	CDS	1149136	1150092	.	-	0	ID=cds1020;Parent=gene1069;Dbxref=Genbank:WP_002208649.1;Name=WP_002208649.1;gbkey=CDS;product=cytochrome O ubiquinol oxidase;protein_id=WP_002208649.1;transl_table=11
NC_004088.1	RefSeq	gene	1150462	1151229	.	-	.	ID=gene1070;Name=Y_RS05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05375;old_locus_tag=y1022
NC_004088.1	Protein Homology	CDS	1150462	1151229	.	-	0	ID=cds1021;Parent=gene1070;Dbxref=Genbank:WP_002208648.1;Name=WP_002208648.1;gbkey=CDS;product=ion channel protein Tsx;protein_id=WP_002208648.1;transl_table=11
NC_004088.1	RefSeq	gene	1151521	1152999	.	-	.	ID=gene1071;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=Y_RS05380;old_locus_tag=y1023
NC_004088.1	Protein Homology	CDS	1151521	1152999	.	-	0	ID=cds1022;Parent=gene1071;Dbxref=Genbank:WP_002223277.1;Name=WP_002223277.1;Note=in Escherichia coli this protein is a permease involved in peptidoglycan recycling%3B member of major facilitator superfamily%3B MFS%3B inner membrane protein;gbkey=CDS;gene=ampG;product=AmpG family muropeptide MFS transporter;protein_id=WP_002223277.1;transl_table=11
NC_004088.1	RefSeq	gene	1153117	1153695	.	-	.	ID=gene1072;Name=Y_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05385;old_locus_tag=y1024
NC_004088.1	Protein Homology	CDS	1153117	1153695	.	-	0	ID=cds1023;Parent=gene1072;Dbxref=Genbank:WP_002208646.1;Name=WP_002208646.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208646.1;transl_table=11
NC_004088.1	RefSeq	gene	1154050	1154364	.	+	.	ID=gene1073;Name=Y_RS05390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05390;old_locus_tag=y1025
NC_004088.1	Protein Homology	CDS	1154050	1154364	.	+	0	ID=cds1024;Parent=gene1073;Dbxref=Genbank:WP_002354680.1;Name=WP_002354680.1;Note=positive transcriptional regulator of morphogenetic pathway%3B controlling several genes involved in oxidative stress%2C acid stress%2C heat shock%2C osmotic shock%2C and carbon-starvation stress;gbkey=CDS;product=BolA family transcriptional regulator;protein_id=WP_002354680.1;transl_table=11
NC_004088.1	RefSeq	gene	1154523	1154708	.	+	.	ID=gene1074;Name=Y_RS05395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05395
NC_004088.1	Protein Homology	CDS	1154523	1154708	.	+	0	ID=cds1025;Parent=gene1074;Dbxref=Genbank:WP_012304506.1;Name=WP_012304506.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012304506.1;transl_table=11
NC_004088.1	RefSeq	gene	1154781	1156085	.	+	.	ID=gene1075;Name=Y_RS05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05400;old_locus_tag=y1026
NC_004088.1	Protein Homology	CDS	1154781	1156085	.	+	0	ID=cds1026;Parent=gene1075;Dbxref=Genbank:WP_002208643.1;Name=WP_002208643.1;gbkey=CDS;product=trigger factor;protein_id=WP_002208643.1;transl_table=11
NC_004088.1	RefSeq	gene	1156547	1157170	.	+	.	ID=gene1076;Name=Y_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05405;old_locus_tag=y1027
NC_004088.1	Protein Homology	CDS	1156547	1157170	.	+	0	ID=cds1027;Parent=gene1076;Dbxref=Genbank:WP_002208642.1;Name=WP_002208642.1;gbkey=CDS;product=ATP-dependent Clp protease proteolytic subunit;protein_id=WP_002208642.1;transl_table=11
NC_004088.1	RefSeq	gene	1157376	1158647	.	+	.	ID=gene1077;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=Y_RS05410;old_locus_tag=y1028
NC_004088.1	Protein Homology	CDS	1157376	1158647	.	+	0	ID=cds1028;Parent=gene1077;Dbxref=Genbank:WP_002208641.1;Name=WP_002208641.1;Note=binds and unfolds substrates as part of the ClpXP protease;gbkey=CDS;gene=clpX;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_002208641.1;transl_table=11
NC_004088.1	RefSeq	gene	1158842	1161196	.	+	.	ID=gene1078;Name=Y_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05415;old_locus_tag=y1029
NC_004088.1	Protein Homology	CDS	1158842	1161196	.	+	0	ID=cds1029;Parent=gene1078;Dbxref=Genbank:WP_002208640.1;Name=WP_002208640.1;gbkey=CDS;product=peptidase;protein_id=WP_002208640.1;transl_table=11
NC_004088.1	RefSeq	gene	1161414	1161686	.	+	.	ID=gene1079;Name=Y_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05420;old_locus_tag=y1030
NC_004088.1	Protein Homology	CDS	1161414	1161686	.	+	0	ID=cds1030;Parent=gene1079;Dbxref=Genbank:WP_002208639.1;Name=WP_002208639.1;Note=histone-like DNA-binding protein;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208639.1;transl_table=11
NC_004088.1	RefSeq	gene	1161987	1163873	.	+	.	ID=gene1080;Name=Y_RS05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05425;old_locus_tag=y1031
NC_004088.1	Protein Homology	CDS	1161987	1163873	.	+	0	ID=cds1031;Parent=gene1080;Dbxref=Genbank:WP_002208638.1;Name=WP_002208638.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_002208638.1;transl_table=11
NC_004088.1	RefSeq	gene	1164013	1164459	.	+	.	ID=gene1081;Name=Y_RS05430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05430;old_locus_tag=y1032
NC_004088.1	Protein Homology	CDS	1164013	1164459	.	+	0	ID=cds1032;Parent=gene1081;Dbxref=Genbank:WP_002208637.1;Name=WP_002208637.1;gbkey=CDS;product=transporter;protein_id=WP_002208637.1;transl_table=11
NC_004088.1	RefSeq	gene	1164813	1165220	.	+	.	ID=gene1082;Name=Y_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05435;old_locus_tag=y1033
NC_004088.1	Protein Homology	CDS	1164813	1165220	.	+	0	ID=cds1033;Parent=gene1082;Dbxref=Genbank:WP_002208636.1;Name=WP_002208636.1;gbkey=CDS;product=thioesterase;protein_id=WP_002208636.1;transl_table=11
NC_004088.1	RefSeq	gene	1165306	1166004	.	-	.	ID=gene1083;Name=Y_RS05440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05440;old_locus_tag=y1034
NC_004088.1	Protein Homology	CDS	1165306	1166004	.	-	0	ID=cds1034;Parent=gene1083;Dbxref=Genbank:WP_002208635.1;Name=WP_002208635.1;Note=YbaX%3B catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)%2C as one of the early reactions of quenosine biosynthesis%3B quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn%2C Asp%2C Tyr%2C and His;gbkey=CDS;product=7-cyano-7-deazaguanine synthase;protein_id=WP_002208635.1;transl_table=11
NC_004088.1	RefSeq	gene	1166269	1167972	.	-	.	ID=gene1084;Name=Y_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05445;old_locus_tag=y1035
NC_004088.1	Protein Homology	CDS	1166269	1167972	.	-	0	ID=cds1035;Parent=gene1084;Dbxref=Genbank:WP_002208633.1;Name=WP_002208633.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208633.1;transl_table=11
NC_004088.1	RefSeq	gene	1168077	1168898	.	+	.	ID=gene1085;Name=Y_RS05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05450;old_locus_tag=y1036
NC_004088.1	Protein Homology	CDS	1168077	1168898	.	+	0	ID=cds1036;Parent=gene1085;Dbxref=Genbank:WP_002208632.1;Name=WP_002208632.1;Note=HMP-PP phosphatase%3B catalyzes the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate (HMP-P);gbkey=CDS;product=HMP-PP phosphatase;protein_id=WP_002208632.1;transl_table=11
NC_004088.1	RefSeq	gene	1169110	1170150	.	-	.	ID=gene1086;Name=Y_RS05455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05455;old_locus_tag=y1037
NC_004088.1	Protein Homology	CDS	1169110	1170150	.	-	0	ID=cds1037;Parent=gene1086;Dbxref=Genbank:WP_002208631.1;Name=WP_002208631.1;gbkey=CDS;product=cysteine synthase;protein_id=WP_002208631.1;transl_table=11
NC_004088.1	RefSeq	gene	1170276	1170737	.	+	.	ID=gene1087;Name=Y_RS05460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05460;old_locus_tag=y1038
NC_004088.1	Protein Homology	CDS	1170276	1170737	.	+	0	ID=cds1038;Parent=gene1087;Dbxref=Genbank:WP_002208630.1;Name=WP_002208630.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_002208630.1;transl_table=11
NC_004088.1	RefSeq	gene	1170839	1172605	.	+	.	ID=gene1088;Name=Y_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05465;old_locus_tag=y1039
NC_004088.1	Protein Homology	CDS	1170839	1172605	.	+	0	ID=cds1039;Parent=gene1088;Dbxref=Genbank:WP_002208629.1;Name=WP_002208629.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_002208629.1;transl_table=11
NC_004088.1	RefSeq	gene	1172598	1174421	.	+	.	ID=gene1089;Name=Y_RS05470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05470;old_locus_tag=y1040
NC_004088.1	Protein Homology	CDS	1172598	1174421	.	+	0	ID=cds1040;Parent=gene1089;Dbxref=Genbank:WP_002208628.1;Name=WP_002208628.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_002208628.1;transl_table=11
NC_004088.1	RefSeq	gene	1174831	1175169	.	+	.	ID=gene1090;Name=Y_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05475;old_locus_tag=y1041
NC_004088.1	Protein Homology	CDS	1174831	1175169	.	+	0	ID=cds1041;Parent=gene1090;Dbxref=Genbank:WP_002208627.1;Name=WP_002208627.1;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA;gbkey=CDS;product=nitrogen regulatory protein P-II 2;protein_id=WP_002208627.1;transl_table=11
NC_004088.1	RefSeq	gene	1175209	1176498	.	+	.	ID=gene1091;Name=Y_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05480;old_locus_tag=y1042
NC_004088.1	Protein Homology	CDS	1175209	1176498	.	+	0	ID=cds1042;Parent=gene1091;Dbxref=Genbank:WP_002228344.1;Name=WP_002228344.1;gbkey=CDS;product=ammonium transporter;protein_id=WP_002228344.1;transl_table=11
NC_004088.1	RefSeq	gene	1176759	1177619	.	-	.	ID=gene1092;Name=Y_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05485;old_locus_tag=y1043
NC_004088.1	Protein Homology	CDS	1176759	1177619	.	-	0	ID=cds1043;Parent=gene1092;Dbxref=Genbank:WP_002208625.1;Name=WP_002208625.1;gbkey=CDS;product=acyl-CoA thioesterase;protein_id=WP_002208625.1;transl_table=11
NC_004088.1	RefSeq	gene	1177876	1178397	.	+	.	ID=gene1093;Name=Y_RS05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05490;old_locus_tag=y1044
NC_004088.1	Protein Homology	CDS	1177876	1178397	.	+	0	ID=cds1044;Parent=gene1093;Dbxref=Genbank:WP_002208624.1;Name=WP_002208624.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002208624.1;transl_table=11
NC_004088.1	RefSeq	gene	1178533	1178922	.	-	.	ID=gene1094;Name=Y_RS05495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05495
NC_004088.1	Protein Homology	CDS	1178533	1178922	.	-	0	ID=cds1045;Parent=gene1094;Dbxref=Genbank:WP_002208623.1;Name=WP_002208623.1;gbkey=CDS;product=6-O-methylguanine DNA methyltransferase;protein_id=WP_002208623.1;transl_table=11
NC_004088.1	RefSeq	gene	1179810	1180013	.	-	.	ID=gene1095;Name=Y_RS05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05500;old_locus_tag=y1046
NC_004088.1	Protein Homology	CDS	1179810	1180013	.	-	0	ID=cds1046;Parent=gene1095;Dbxref=Genbank:WP_002208622.1;Name=WP_002208622.1;Note=with Hns involved in transcriptional regulation of hemolysin%3B non-specific DNA-binding protein which affects the production of multiple proteins;gbkey=CDS;product=modulating protein YmoA;protein_id=WP_002208622.1;transl_table=11
NC_004088.1	RefSeq	gene	1180062	1180430	.	-	.	ID=gene1096;Name=Y_RS05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05505;old_locus_tag=y1047
NC_004088.1	Protein Homology	CDS	1180062	1180430	.	-	0	ID=cds1047;Parent=gene1096;Dbxref=Genbank:WP_002218472.1;Name=WP_002218472.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002218472.1;transl_table=11
NC_004088.1	RefSeq	gene	1180589	1180942	.	-	.	ID=gene1097;Name=Y_RS05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05510
NC_004088.1	Protein Homology	CDS	1180589	1180942	.	-	0	ID=cds1048;Parent=gene1097;Dbxref=Genbank:WP_002208619.1;Name=WP_002208619.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208619.1;transl_table=11
NC_004088.1	RefSeq	gene	1181816	1181959	.	-	.	ID=gene1098;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=Y_RS05515
NC_004088.1	Protein Homology	CDS	1181816	1181959	.	-	0	ID=cds1049;Parent=gene1098;Dbxref=Genbank:WP_002208618.1;Name=WP_002208618.1;Note=smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group do not have the motif;gbkey=CDS;gene=rpmJ;product=50S ribosomal protein L36;protein_id=WP_002208618.1;transl_table=11
NC_004088.1	RefSeq	gene	1181975	1182235	.	-	.	ID=gene1099;Name=Y_RS05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05520;old_locus_tag=y1048
NC_004088.1	Protein Homology	CDS	1181975	1182235	.	-	0	ID=cds1050;Parent=gene1099;Dbxref=Genbank:WP_002208617.1;Name=WP_002208617.1;gbkey=CDS;product=50S ribosomal protein L31 type B;protein_id=WP_002208617.1;transl_table=11
NC_004088.1	RefSeq	gene	1182421	1185573	.	-	.	ID=gene1100;Name=Y_RS05525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05525;old_locus_tag=y1049
NC_004088.1	Protein Homology	CDS	1182421	1185573	.	-	0	ID=cds1051;Parent=gene1100;Dbxref=Genbank:WP_002208616.1;Name=WP_002208616.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_002208616.1;transl_table=11
NC_004088.1	RefSeq	gene	1185590	1186777	.	-	.	ID=gene1101;Name=Y_RS05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05530;old_locus_tag=y1050
NC_004088.1	Protein Homology	CDS	1185590	1186777	.	-	0	ID=cds1052;Parent=gene1101;Dbxref=Genbank:WP_002208615.1;Name=WP_002208615.1;Note=with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics;gbkey=CDS;product=multidrug transporter;protein_id=WP_002208615.1;transl_table=11
NC_004088.1	RefSeq	gene	1186922	1187578	.	+	.	ID=gene1102;Name=Y_RS05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05535;old_locus_tag=y1051
NC_004088.1	Protein Homology	CDS	1186922	1187578	.	+	0	ID=cds1053;Parent=gene1102;Dbxref=Genbank:WP_002208614.1;Name=WP_002208614.1;Note=regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208614.1;transl_table=11
NC_004088.1	RefSeq	gene	1187591	1187944	.	+	.	ID=gene1103;Name=Y_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05540;old_locus_tag=y1052
NC_004088.1	Protein Homology	CDS	1187591	1187944	.	+	0	ID=cds1054;Parent=gene1103;Dbxref=Genbank:WP_002208613.1;Name=WP_002208613.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208613.1;transl_table=11
NC_004088.1	RefSeq	gene	1188240	1191602	.	+	.	ID=gene1104;Name=Y_RS05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05545;old_locus_tag=y1054
NC_004088.1	Protein Homology	CDS	1188240	1191602	.	+	0	ID=cds1055;Parent=gene1104;Dbxref=Genbank:WP_002208612.1;Name=WP_002208612.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208612.1;transl_table=11
NC_004088.1	RefSeq	gene	1191942	1192097	.	-	.	ID=gene1105;Name=Y_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05550;old_locus_tag=y1055
NC_004088.1	Protein Homology	CDS	1191942	1192097	.	-	0	ID=cds1056;Parent=gene1105;Dbxref=Genbank:WP_002208611.1;Name=WP_002208611.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208611.1;transl_table=11
NC_004088.1	RefSeq	gene	1192268	1192804	.	-	.	ID=gene1106;Name=Y_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05555;old_locus_tag=y1056
NC_004088.1	Protein Homology	CDS	1192268	1192804	.	-	0	ID=cds1057;Parent=gene1106;Dbxref=Genbank:WP_002208610.1;Name=WP_002208610.1;gbkey=CDS;product=prephenate dehydrogenase;protein_id=WP_002208610.1;transl_table=11
NC_004088.1	RefSeq	gene	1193003	1193191	.	-	.	ID=gene1107;Name=Y_RS05560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05560;old_locus_tag=y1057
NC_004088.1	Protein Homology	CDS	1193003	1193191	.	-	0	ID=cds1058;Parent=gene1107;Dbxref=Genbank:WP_002208609.1;Name=WP_002208609.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208609.1;transl_table=11
NC_004088.1	RefSeq	gene	1193624	1194187	.	+	.	ID=gene1108;Name=Y_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05565;old_locus_tag=y1059
NC_004088.1	Protein Homology	CDS	1193624	1194187	.	+	0	ID=cds1059;Parent=gene1108;Dbxref=Genbank:WP_002208606.1;Name=WP_002208606.1;Note=catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis;gbkey=CDS;product=adenine phosphoribosyltransferase;protein_id=WP_002208606.1;transl_table=11
NC_004088.1	RefSeq	gene	1194843	1196819	.	+	.	ID=gene1109;Name=Y_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05570;old_locus_tag=y1060
NC_004088.1	Protein Homology	CDS	1194843	1196819	.	+	0	ID=cds1060;Parent=gene1109;Dbxref=Genbank:WP_002208605.1;Name=WP_002208605.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA;gbkey=CDS;product=DNA polymerase III subunit gamma/tau;protein_id=WP_002208605.1;transl_table=11
NC_004088.1	RefSeq	gene	1196875	1197207	.	+	.	ID=gene1110;Name=Y_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05575;old_locus_tag=y1061
NC_004088.1	Protein Homology	CDS	1196875	1197207	.	+	0	ID=cds1061;Parent=gene1110;Dbxref=Genbank:WP_002208604.1;Name=WP_002208604.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208604.1;transl_table=11
NC_004088.1	RefSeq	gene	1197207	1197812	.	+	.	ID=gene1111;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=Y_RS05580;old_locus_tag=y1062
NC_004088.1	Protein Homology	CDS	1197207	1197812	.	+	0	ID=cds1062;Parent=gene1111;Dbxref=Genbank:WP_002208603.1;Name=WP_002208603.1;Note=involved in a recombinational process of DNA repair%2C independent of the recBC complex;gbkey=CDS;gene=recR;product=recombination protein RecR;protein_id=WP_002208603.1;transl_table=11
NC_004088.1	RefSeq	gene	1198004	1199878	.	+	.	ID=gene1112;Name=Y_RS05585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05585;old_locus_tag=y1064
NC_004088.1	Protein Homology	CDS	1198004	1199878	.	+	0	ID=cds1063;Parent=gene1112;Dbxref=Genbank:WP_002208601.1;Name=WP_002208601.1;Note=molecular chaperone;gbkey=CDS;product=chaperone protein HtpG;protein_id=WP_002208601.1;transl_table=11
NC_004088.1	RefSeq	gene	1200105	1200749	.	+	.	ID=gene1113;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=Y_RS05590;old_locus_tag=y1065
NC_004088.1	Protein Homology	CDS	1200105	1200749	.	+	0	ID=cds1064;Parent=gene1113;Dbxref=Genbank:WP_002208600.1;Name=WP_002208600.1;Note=essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP;gbkey=CDS;gene=adk;product=adenylate kinase;protein_id=WP_002208600.1;transl_table=11
NC_004088.1	RefSeq	gene	1200839	1201801	.	+	.	ID=gene1114;Name=Y_RS05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05595;old_locus_tag=y1066
NC_004088.1	Protein Homology	CDS	1200839	1201801	.	+	0	ID=cds1065;Parent=gene1114;Dbxref=Genbank:WP_002208599.1;Name=WP_002208599.1;gbkey=CDS;product=ferrochelatase;protein_id=WP_002208599.1;transl_table=11
NC_004088.1	RefSeq	gene	1202399	1203388	.	+	.	ID=gene1115;Name=Y_RS05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05600;old_locus_tag=y1067
NC_004088.1	Protein Homology	CDS	1202399	1203388	.	+	0	ID=cds1066;Parent=gene1115;Dbxref=Genbank:WP_002208598.1;Name=WP_002208598.1;gbkey=CDS;product=CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase;protein_id=WP_002208598.1;transl_table=11
NC_004088.1	RefSeq	gene	1203426	1204199	.	+	.	ID=gene1116;Name=Y_RS05605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05605;old_locus_tag=y1068
NC_004088.1	Protein Homology	CDS	1203426	1204199	.	+	0	ID=cds1067;Parent=gene1116;Dbxref=Genbank:WP_002208597.1;Name=WP_002208597.1;gbkey=CDS;product=glucose-1-phosphate cytidylyltransferase;protein_id=WP_002208597.1;transl_table=11
NC_004088.1	RefSeq	gene	1204204	1204347	.	+	.	ID=gene1117;Name=Y_RS05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05610
NC_004088.1	Protein Homology	CDS	1204204	1204347	.	+	0	ID=cds1068;Parent=gene1117;Dbxref=Genbank:WP_002215986.1;Name=WP_002215986.1;gbkey=CDS;product=CDP-glycerol glycerophosphotransferase;protein_id=WP_002215986.1;transl_table=11
NC_004088.1	RefSeq	gene	1204379	1205278	.	+	.	ID=gene1118;Name=Y_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05615;old_locus_tag=y1069
NC_004088.1	Protein Homology	CDS	1204379	1205278	.	+	0	ID=cds1069;Parent=gene1118;Dbxref=Genbank:WP_002354671.1;Name=WP_002354671.1;gbkey=CDS;product=CDP-glucose 4%2C6-dehydratase;protein_id=WP_002354671.1;transl_table=11
NC_004088.1	RefSeq	gene	1205296	1206609	.	+	.	ID=gene1119;Name=Y_RS05620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05620;old_locus_tag=y1070
NC_004088.1	Protein Homology	CDS	1205296	1206609	.	+	0	ID=cds1070;Parent=gene1119;Dbxref=Genbank:WP_002232207.1;Name=WP_002232207.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_002232207.1;transl_table=11
NC_004088.1	RefSeq	gene	1206646	1207503	.	+	.	ID=gene1120;Name=Y_RS05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05625;old_locus_tag=y1071
NC_004088.1	Protein Homology	CDS	1206646	1207503	.	+	0	ID=cds1071;Parent=gene1120;Dbxref=Genbank:WP_002208595.1;Name=WP_002208595.1;gbkey=CDS;product=paratose synthase;protein_id=WP_002208595.1;transl_table=11
NC_004088.1	RefSeq	gene	1207504	1208787	.	+	.	ID=gene1121;Name=Y_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05630;old_locus_tag=y1072
NC_004088.1	Protein Homology	CDS	1207504	1208787	.	+	0	ID=cds1072;Parent=gene1121;Dbxref=Genbank:WP_002208594.1;Name=WP_002208594.1;gbkey=CDS;product=O-antigen synthesis protein WbyH;protein_id=WP_002208594.1;transl_table=11
NC_004088.1	RefSeq	gene	1208861	1210204	.	+	.	ID=gene1122;Name=Y_RS05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05635;old_locus_tag=y1074
NC_004088.1	Protein Homology	CDS	1208861	1210204	.	+	0	ID=cds1073;Parent=gene1122;Dbxref=Genbank:WP_002208593.1;Name=WP_002208593.1;gbkey=CDS;product=O-unit flippase Wzx;protein_id=WP_002208593.1;transl_table=11
NC_004088.1	RefSeq	gene	1210215	1210928	.	+	.	ID=gene1123;Name=Y_RS05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05640;old_locus_tag=y1075
NC_004088.1	Protein Homology	CDS	1210215	1210928	.	+	0	ID=cds1074;Parent=gene1123;Dbxref=Genbank:WP_002215988.1;Name=WP_002215988.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_002215988.1;transl_table=11
NC_004088.1	RefSeq	gene	1211308	1212450	.	+	.	ID=gene1124;Name=Y_RS05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05645;old_locus_tag=y1076
NC_004088.1	Protein Homology	CDS	1211308	1212450	.	+	0	ID=cds1075;Parent=gene1124;Dbxref=Genbank:WP_002208592.1;Name=WP_002208592.1;gbkey=CDS;product=mannosyltransferase;protein_id=WP_002208592.1;transl_table=11
NC_004088.1	RefSeq	gene	1212772	1213668	.	+	.	ID=gene1125;Name=Y_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05650
NC_004088.1	Protein Homology	CDS	1212772	1213668	.	+	0	ID=cds1076;Parent=gene1125;Dbxref=Genbank:WP_025476312.1;Name=WP_025476312.1;gbkey=CDS;product=histidine kinase;protein_id=WP_025476312.1;transl_table=11
NC_004088.1	RefSeq	gene	1213917	1214930	.	+	.	ID=gene1126;Name=Y_RS05655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05655;old_locus_tag=y1078
NC_004088.1	Protein Homology	CDS	1213917	1214930	.	+	0	ID=cds1077;Parent=gene1126;Dbxref=Genbank:WP_002208591.1;Name=WP_002208591.1;gbkey=CDS;product=mannosyltransferase;protein_id=WP_002208591.1;transl_table=11
NC_004088.1	RefSeq	gene	1214946	1216068	.	+	.	ID=gene1127;Name=Y_RS05660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS05660;pseudo=true
NC_004088.1	Protein Homology	CDS	1214946	1216068	.	+	0	ID=cds1078;Parent=gene1127;Note=catalyzes the formation of GDP-4-dehydro-6-deoxy-D-mannose from GDP mannose;exception=annotated by transcript or proteomic data;gbkey=CDS;product=GDP-mannose 4%2C6-dehydratase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	1216074	1217039	.	+	.	ID=gene1128;Name=Y_RS05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05665;old_locus_tag=y1080
NC_004088.1	Protein Homology	CDS	1216074	1217039	.	+	0	ID=cds1079;Parent=gene1128;Dbxref=Genbank:WP_002223297.1;Name=WP_002223297.1;Note=bifunctional GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase%3Bcatalyzes the formation of GDP-fucose from GDP-4-dehydro-6-deoxy-D-mannose;gbkey=CDS;product=GDP-fucose synthetase;protein_id=WP_002223297.1;transl_table=11
NC_004088.1	RefSeq	gene	1217226	1218632	.	+	.	ID=gene1129;Name=cpsB;gbkey=Gene;gene=cpsB;gene_biotype=protein_coding;locus_tag=Y_RS05670;old_locus_tag=y1081
NC_004088.1	Protein Homology	CDS	1217226	1218632	.	+	0	ID=cds1080;Parent=gene1129;Dbxref=Genbank:WP_002208590.1;Name=WP_002208590.1;Note=capsular polysaccharide colanic acid biosynthesis protein%3B catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate;gbkey=CDS;gene=cpsB;product=mannose-1-phosphate guanyltransferase;protein_id=WP_002208590.1;transl_table=11
NC_004088.1	RefSeq	gene	1218635	1219378	.	+	.	ID=gene1130;Name=Y_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05675;old_locus_tag=y1082
NC_004088.1	Protein Homology	CDS	1218635	1219378	.	+	0	ID=cds1081;Parent=gene1130;Dbxref=Genbank:WP_002208589.1;Name=WP_002208589.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_002208589.1;transl_table=11
NC_004088.1	RefSeq	gene	1219383	1220756	.	+	.	ID=gene1131;Name=Y_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05680;old_locus_tag=y1083
NC_004088.1	Protein Homology	CDS	1219383	1220756	.	+	0	ID=cds1082;Parent=gene1131;Dbxref=Genbank:WP_002208588.1;Name=WP_002208588.1;Note=capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate;gbkey=CDS;product=phosphomannomutase;protein_id=WP_002208588.1;transl_table=11
NC_004088.1	RefSeq	gene	1220804	1221955	.	+	.	ID=gene1132;Name=Y_RS05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05685;old_locus_tag=y1084
NC_004088.1	Protein Homology	CDS	1220804	1221955	.	+	0	ID=cds1083;Parent=gene1132;Dbxref=Genbank:WP_002223299.1;Name=WP_002223299.1;gbkey=CDS;product=chain-length determining protein;protein_id=WP_002223299.1;transl_table=11
NC_004088.1	RefSeq	gene	1222159	1223463	.	+	.	ID=gene1133;Name=Y_RS05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05690;old_locus_tag=y1085
NC_004088.1	Protein Homology	CDS	1222159	1223463	.	+	0	ID=cds1084;Parent=gene1133;Dbxref=Genbank:WP_002208586.1;Name=WP_002208586.1;Note=catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP;gbkey=CDS;product=inosine/guanosine kinase;protein_id=WP_002208586.1;transl_table=11
NC_004088.1	RefSeq	gene	1223560	1225251	.	-	.	ID=gene1134;Name=Y_RS05695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05695;old_locus_tag=y1086
NC_004088.1	Protein Homology	CDS	1223560	1225251	.	-	0	ID=cds1085;Parent=gene1134;Dbxref=Genbank:WP_002208585.1;Name=WP_002208585.1;Note=YbaL%3B member of the CPA-2 family of antiporters%3B uncharacterized protein;gbkey=CDS;product=cation:proton antiport protein;protein_id=WP_002208585.1;transl_table=11
NC_004088.1	RefSeq	gene	1225486	1226700	.	-	.	ID=gene1135;Name=Y_RS05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05700;old_locus_tag=y1087
NC_004088.1	Protein Homology	CDS	1225486	1226700	.	-	0	ID=cds1086;Parent=gene1135;Dbxref=Genbank:WP_002208584.1;Name=WP_002208584.1;gbkey=CDS;product=fosmidomycin resistance protein;protein_id=WP_002208584.1;transl_table=11
NC_004088.1	RefSeq	gene	1226982	1227239	.	+	.	ID=gene1136;Name=Y_RS05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05705
NC_004088.1	GeneMarkS+	CDS	1226982	1227239	.	+	0	ID=cds1087;Parent=gene1136;Dbxref=Genbank:WP_002215363.1;Name=WP_002215363.1;gbkey=CDS;product=protein ushA;protein_id=WP_002215363.1;transl_table=11
NC_004088.1	RefSeq	gene	1227229	1228020	.	+	.	ID=gene1137;Name=Y_RS05710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05710
NC_004088.1	Protein Homology	CDS	1227229	1228020	.	+	0	ID=cds1088;Parent=gene1137;Dbxref=Genbank:WP_002232230.1;Name=WP_002232230.1;gbkey=CDS;product=metallophosphatase;protein_id=WP_002232230.1;transl_table=11
NC_004088.1	RefSeq	gene	1228014	1228637	.	+	.	ID=gene1138;Name=Y_RS05715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05715
NC_004088.1	Protein Homology	CDS	1228014	1228637	.	+	0	ID=cds1089;Parent=gene1138;Dbxref=Genbank:WP_002228353.1;Name=WP_002228353.1;gbkey=CDS;product=5'-nucleotidase;protein_id=WP_002228353.1;transl_table=11
NC_004088.1	RefSeq	gene	1228741	1228980	.	-	.	ID=gene1139;Name=Y_RS05720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05720;old_locus_tag=y1089
NC_004088.1	Protein Homology	CDS	1228741	1228980	.	-	0	ID=cds1090;Parent=gene1139;Dbxref=Genbank:WP_002208583.1;Name=WP_002208583.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208583.1;transl_table=11
NC_004088.1	RefSeq	gene	1228994	1229251	.	-	.	ID=gene1140;Name=Y_RS05725;gbkey=Gene;gene_biotype=other;locus_tag=Y_RS05725
NC_004088.1	RefSeq	repeat_region	1229067	1229236	.	+	.	ID=id150;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1229317	1229796	.	-	.	ID=gene1141;Name=Y_RS05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05730;old_locus_tag=y1090
NC_004088.1	Protein Homology	CDS	1229317	1229796	.	-	0	ID=cds1091;Parent=gene1141;Dbxref=Genbank:WP_002208581.1;Name=WP_002208581.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208581.1;transl_table=11
NC_004088.1	RefSeq	gene	1230060	1230869	.	-	.	ID=gene1142;Name=Y_RS05735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05735;old_locus_tag=y1091
NC_004088.1	Protein Homology	CDS	1230060	1230869	.	-	0	ID=cds1092;Parent=gene1142;Dbxref=Genbank:WP_002208580.1;Name=WP_002208580.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208580.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1230909	1231319	.	+	.	ID=id151;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1231390	1234275	.	-	.	ID=gene1143;Name=copA;gbkey=Gene;gene=copA;gene_biotype=protein_coding;locus_tag=Y_RS05740;old_locus_tag=y1093
NC_004088.1	Protein Homology	CDS	1231390	1234275	.	-	0	ID=cds1093;Parent=gene1143;Dbxref=Genbank:WP_002223301.1;Name=WP_002223301.1;gbkey=CDS;gene=copA;product=copper exporting ATPase;protein_id=WP_002223301.1;transl_table=11
NC_004088.1	RefSeq	gene	1234482	1234901	.	+	.	ID=gene1144;Name=Y_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05745;old_locus_tag=y1094
NC_004088.1	Protein Homology	CDS	1234482	1234901	.	+	0	ID=cds1094;Parent=gene1144;Dbxref=Genbank:WP_002208578.1;Name=WP_002208578.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208578.1;transl_table=11
NC_004088.1	RefSeq	gene	1235010	1235459	.	-	.	ID=gene1145;Name=Y_RS05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05750;old_locus_tag=y1095
NC_004088.1	Protein Homology	CDS	1235010	1235459	.	-	0	ID=cds1095;Parent=gene1145;Dbxref=Genbank:WP_002208577.1;Name=WP_002208577.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208577.1;transl_table=11
NC_004088.1	RefSeq	gene	1235462	1236376	.	-	.	ID=gene1146;Name=Y_RS05755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05755;old_locus_tag=y1096
NC_004088.1	Protein Homology	CDS	1235462	1236376	.	-	0	ID=cds1096;Parent=gene1146;Dbxref=Genbank:WP_002208576.1;Name=WP_002208576.1;gbkey=CDS;product=protease;protein_id=WP_002208576.1;transl_table=11
NC_004088.1	RefSeq	gene	1236571	1237440	.	-	.	ID=gene1147;Name=Y_RS05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05760;old_locus_tag=y1097
NC_004088.1	Protein Homology	CDS	1236571	1237440	.	-	0	ID=cds1097;Parent=gene1147;Dbxref=Genbank:WP_002208575.1;Name=WP_002208575.1;gbkey=CDS;product=thioredoxin;protein_id=WP_002208575.1;transl_table=11
NC_004088.1	RefSeq	gene	1237517	1238293	.	-	.	ID=gene1148;Name=Y_RS05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05765;old_locus_tag=y1098
NC_004088.1	Protein Homology	CDS	1237517	1238293	.	-	0	ID=cds1098;Parent=gene1148;Dbxref=Genbank:WP_002208574.1;Name=WP_002208574.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002208574.1;transl_table=11
NC_004088.1	RefSeq	gene	1238680	1239315	.	-	.	ID=gene1149;Name=Y_RS05770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05770;old_locus_tag=y1099
NC_004088.1	Protein Homology	CDS	1238680	1239315	.	-	0	ID=cds1099;Parent=gene1149;Dbxref=Genbank:WP_002208573.1;Name=WP_002208573.1;gbkey=CDS;product=multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1;protein_id=WP_002208573.1;transl_table=11
NC_004088.1	RefSeq	gene	1239286	1239972	.	+	.	ID=gene1150;Name=Y_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05775;old_locus_tag=y1100
NC_004088.1	Protein Homology	CDS	1239286	1239972	.	+	0	ID=cds1100;Parent=gene1150;Dbxref=Genbank:WP_002208572.1;Name=WP_002208572.1;gbkey=CDS;product=phosphonate ABC transporter ATP-binding protein;protein_id=WP_002208572.1;transl_table=11
NC_004088.1	RefSeq	gene	1239969	1242398	.	+	.	ID=gene1151;Name=Y_RS05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05780;old_locus_tag=y1101
NC_004088.1	Protein Homology	CDS	1239969	1242398	.	+	0	ID=cds1101;Parent=gene1151;Dbxref=Genbank:WP_002208571.1;Name=WP_002208571.1;gbkey=CDS;product=permease;protein_id=WP_002208571.1;transl_table=11
NC_004088.1	RefSeq	gene	1242442	1243506	.	-	.	ID=gene1152;Name=Y_RS05785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05785;old_locus_tag=y1102
NC_004088.1	Protein Homology	CDS	1242442	1243506	.	-	0	ID=cds1102;Parent=gene1152;Dbxref=Genbank:WP_002208570.1;Name=WP_002208570.1;gbkey=CDS;product=phosphoribosylaminoimidazole carboxylase;protein_id=WP_002208570.1;transl_table=11
NC_004088.1	RefSeq	gene	1243503	1244027	.	-	.	ID=gene1153;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=Y_RS05790;old_locus_tag=y1103
NC_004088.1	Protein Homology	CDS	1243503	1244027	.	-	0	ID=cds1103;Parent=gene1153;Dbxref=Genbank:WP_002208569.1;Name=WP_002208569.1;Note=catalyzes the formation of 4-carboxy-5-aminoimidazole ribonucleotide from N5-carboxyaminoimidazole ribonucleotide;gbkey=CDS;gene=purE;product=N5-carboxyaminoimidazole ribonucleotide mutase;protein_id=WP_002208569.1;transl_table=11
NC_004088.1	RefSeq	gene	1244323	1245045	.	-	.	ID=gene1154;Name=Y_RS05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05795;old_locus_tag=y1105
NC_004088.1	Protein Homology	CDS	1244323	1245045	.	-	0	ID=cds1104;Parent=gene1154;Dbxref=Genbank:WP_002208568.1;Name=WP_002208568.1;Note=catalyzes the formation of 2%2C3%3Ddiacylglucosamine 1-phosphate from UDP-2%2C3%3Ddiacylglucosamine;gbkey=CDS;product=UDP-2%2C3-diacylglucosamine hydrolase;protein_id=WP_002208568.1;transl_table=11
NC_004088.1	RefSeq	gene	1245056	1245550	.	-	.	ID=gene1155;Name=Y_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05800;old_locus_tag=y1106
NC_004088.1	Protein Homology	CDS	1245056	1245550	.	-	0	ID=cds1105;Parent=gene1155;Dbxref=Genbank:WP_002208567.1;Name=WP_002208567.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_002208567.1;transl_table=11
NC_004088.1	RefSeq	gene	1245761	1247146	.	+	.	ID=gene1156;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=Y_RS05805;old_locus_tag=y1107
NC_004088.1	Protein Homology	CDS	1245761	1247146	.	+	0	ID=cds1106;Parent=gene1156;Dbxref=Genbank:WP_002222677.1;Name=WP_002222677.1;Note=catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA;gbkey=CDS;gene=cysS;product=cysteine--tRNA ligase;protein_id=WP_002222677.1;transl_table=11
NC_004088.1	RefSeq	gene	1247273	1247503	.	+	.	ID=gene1157;Name=Y_RS05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05810
NC_004088.1	Protein Homology	CDS	1247273	1247503	.	+	0	ID=cds1107;Parent=gene1157;Dbxref=Genbank:WP_002430127.1;Name=WP_002430127.1;gbkey=CDS;product=invasin;protein_id=WP_002430127.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1247342	1248062	.	+	.	ID=id152;gbkey=repeat_region
NC_004088.1	RefSeq	region	1247348	1248057	.	+	.	ID=id153;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1247493	1247951	.	+	.	ID=gene1158;Name=Y_RS05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05815;old_locus_tag=y1108
NC_004088.1	Protein Homology	CDS	1247493	1247951	.	+	0	ID=cds1108;Parent=gene1158;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1248098	1248310	.	-	.	ID=gene1159;Name=Y_RS05820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05820;old_locus_tag=y1109
NC_004088.1	Protein Homology	CDS	1248098	1248310	.	-	0	ID=cds1109;Parent=gene1159;Dbxref=Genbank:WP_002209775.1;Name=WP_002209775.1;gbkey=CDS;product=ribosome-associated protein;protein_id=WP_002209775.1;transl_table=11
NC_004088.1	RefSeq	gene	1248325	1249191	.	-	.	ID=gene1160;Name=Y_RS05825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05825;old_locus_tag=y1110
NC_004088.1	Protein Homology	CDS	1248325	1249191	.	-	0	ID=cds1110;Parent=gene1160;Dbxref=Genbank:WP_002209774.1;Name=WP_002209774.1;gbkey=CDS;product=bifunctional protein FolD;protein_id=WP_002209774.1;transl_table=11
NC_004088.1	RefSeq	gene	1249406	1249482	.	+	.	ID=gene1161;Name=Y_RS05830;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS05830;old_locus_tag=yt029
NC_004088.1	tRNAscan-SE	tRNA	1249406	1249482	.	+	.	ID=rna46;Parent=gene1161;anticodon=(pos:1249440..1249442);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	tRNAscan-SE	exon	1249406	1249482	.	+	.	ID=id154;Parent=rna46;anticodon=(pos:1249440..1249442);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	RefSeq	gene	1249546	1249728	.	-	.	ID=gene1162;Name=Y_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05835
NC_004088.1	Protein Homology	CDS	1249546	1249728	.	-	0	ID=cds1111;Parent=gene1162;Dbxref=Genbank:WP_002215270.1;Name=WP_002215270.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215270.1;transl_table=11
NC_004088.1	RefSeq	gene	1249987	1250187	.	-	.	ID=gene1163;Name=Y_RS05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05840
NC_004088.1	Protein Homology	CDS	1249987	1250187	.	-	0	ID=cds1112;Parent=gene1163;Dbxref=Genbank:WP_002215268.1;Name=WP_002215268.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215268.1;transl_table=11
NC_004088.1	RefSeq	gene	1250301	1250798	.	-	.	ID=gene1164;Name=Y_RS05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05845;old_locus_tag=y1111
NC_004088.1	Protein Homology	CDS	1250301	1250798	.	-	0	ID=cds1113;Parent=gene1164;Dbxref=Genbank:WP_002228356.1;Name=WP_002228356.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228356.1;transl_table=11
NC_004088.1	RefSeq	gene	1250836	1250949	.	-	.	ID=gene1165;Name=Y_RS05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05850;old_locus_tag=y1112
NC_004088.1	Protein Homology	CDS	1250836	1250949	.	-	0	ID=cds1114;Parent=gene1165;Dbxref=Genbank:WP_002228357.1;Name=WP_002228357.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228357.1;transl_table=11
NC_004088.1	RefSeq	gene	1250934	1251272	.	-	.	ID=gene1166;Name=Y_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05855
NC_004088.1	Protein Homology	CDS	1250934	1251272	.	-	0	ID=cds1115;Parent=gene1166;Dbxref=Genbank:WP_002215266.1;Name=WP_002215266.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215266.1;transl_table=11
NC_004088.1	RefSeq	gene	1251845	1252051	.	+	.	ID=gene1167;Name=Y_RS05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05860
NC_004088.1	Protein Homology	CDS	1251845	1252051	.	+	0	ID=cds1116;Parent=gene1167;Dbxref=Genbank:WP_002354559.1;Name=WP_002354559.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002354559.1;transl_table=11
NC_004088.1	RefSeq	gene	1252048	1252224	.	+	.	ID=gene1168;Name=Y_RS05865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05865
NC_004088.1	Protein Homology	CDS	1252048	1252224	.	+	0	ID=cds1117;Parent=gene1168;Dbxref=Genbank:WP_002209771.1;Name=WP_002209771.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209771.1;transl_table=11
NC_004088.1	RefSeq	gene	1252451	1253053	.	+	.	ID=gene1169;Name=Y_RS05870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05870;old_locus_tag=y1115
NC_004088.1	Protein Homology	CDS	1252451	1253053	.	+	0	ID=cds1118;Parent=gene1169;Dbxref=Genbank:WP_002209770.1;Name=WP_002209770.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209770.1;transl_table=11
NC_004088.1	RefSeq	gene	1253046	1253975	.	+	.	ID=gene1170;Name=Y_RS05875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05875;old_locus_tag=y1116
NC_004088.1	Protein Homology	CDS	1253046	1253975	.	+	0	ID=cds1119;Parent=gene1170;Dbxref=Genbank:WP_002209769.1;Name=WP_002209769.1;gbkey=CDS;product=phosphatidate cytidylyltransferase;protein_id=WP_002209769.1;transl_table=11
NC_004088.1	RefSeq	gene	1253985	1254617	.	+	.	ID=gene1171;Name=Y_RS05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05880;old_locus_tag=y1117
NC_004088.1	Protein Homology	CDS	1253985	1254617	.	+	0	ID=cds1120;Parent=gene1171;Dbxref=Genbank:WP_002209768.1;Name=WP_002209768.1;gbkey=CDS;product=acyltransferase;protein_id=WP_002209768.1;transl_table=11
NC_004088.1	RefSeq	gene	1254614	1256377	.	+	.	ID=gene1172;Name=Y_RS05885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05885;old_locus_tag=y1118
NC_004088.1	Protein Homology	CDS	1254614	1256377	.	+	0	ID=cds1121;Parent=gene1172;Dbxref=Genbank:WP_002209767.1;Name=WP_002209767.1;gbkey=CDS;product=methyltransferase;protein_id=WP_002209767.1;transl_table=11
NC_004088.1	RefSeq	gene	1256370	1257689	.	+	.	ID=gene1173;Name=Y_RS05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05890;old_locus_tag=y1119
NC_004088.1	Protein Homology	CDS	1256370	1257689	.	+	0	ID=cds1122;Parent=gene1173;Dbxref=Genbank:WP_002209766.1;Name=WP_002209766.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209766.1;transl_table=11
NC_004088.1	RefSeq	gene	1257671	1258072	.	+	.	ID=gene1174;Name=Y_RS05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05895;old_locus_tag=y1120
NC_004088.1	Protein Homology	CDS	1257671	1258072	.	+	0	ID=cds1123;Parent=gene1174;Dbxref=Genbank:WP_002209765.1;Name=WP_002209765.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209765.1;transl_table=11
NC_004088.1	RefSeq	gene	1258169	1258474	.	+	.	ID=gene1175;Name=Y_RS05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05900
NC_004088.1	Protein Homology	CDS	1258169	1258474	.	+	0	ID=cds1124;Parent=gene1175;Dbxref=Genbank:WP_002215253.1;Name=WP_002215253.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215253.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1258774	1260731	.	+	.	ID=id155;gbkey=repeat_region
NC_004088.1	RefSeq	region	1258775	1260728	.	-	.	ID=id156;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1258841	1259620	.	-	.	ID=gene1176;Name=Y_RS05905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05905;old_locus_tag=y1121
NC_004088.1	Protein Homology	CDS	1258841	1259620	.	-	0	ID=cds1125;Parent=gene1176;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	1259620	1260642	.	-	.	ID=gene1177;Name=Y_RS05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05910;old_locus_tag=y1122
NC_004088.1	Protein Homology	CDS	1259620	1260642	.	-	0	ID=cds1126;Parent=gene1177;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	1260736	1261629	.	+	.	ID=gene1178;Name=Y_RS05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05915;old_locus_tag=y1123
NC_004088.1	Protein Homology	CDS	1260736	1261629	.	+	0	ID=cds1127;Parent=gene1178;Dbxref=Genbank:WP_002209764.1;Name=WP_002209764.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002209764.1;transl_table=11
NC_004088.1	RefSeq	gene	1261684	1262673	.	-	.	ID=gene1179;Name=Y_RS05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05920;old_locus_tag=y1124
NC_004088.1	Protein Homology	CDS	1261684	1262673	.	-	0	ID=cds1128;Parent=gene1179;Dbxref=Genbank:WP_002209763.1;Name=WP_002209763.1;gbkey=CDS;product=aldo/keto reductase;protein_id=WP_002209763.1;transl_table=11
NC_004088.1	RefSeq	gene	1262699	1263550	.	-	.	ID=gene1180;Name=Y_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05925;old_locus_tag=y1125
NC_004088.1	Protein Homology	CDS	1262699	1263550	.	-	0	ID=cds1129;Parent=gene1180;Dbxref=Genbank:WP_002209762.1;Name=WP_002209762.1;gbkey=CDS;product=2%2C5-diketo-D-gluconic acid reductase;protein_id=WP_002209762.1;transl_table=11
NC_004088.1	RefSeq	gene	1263741	1263866	.	+	.	ID=gene1181;Name=Y_RS05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05930;old_locus_tag=y1126
NC_004088.1	Protein Homology	CDS	1263741	1263866	.	+	0	ID=cds1130;Parent=gene1181;Dbxref=Genbank:WP_002215246.1;Name=WP_002215246.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215246.1;transl_table=11
NC_004088.1	RefSeq	gene	1263863	1264006	.	+	.	ID=gene1182;Name=Y_RS05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05935
NC_004088.1	Protein Homology	CDS	1263863	1264006	.	+	0	ID=cds1131;Parent=gene1182;Dbxref=Genbank:WP_016257754.1;Name=WP_016257754.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016257754.1;transl_table=11
NC_004088.1	RefSeq	gene	1264023	1265651	.	+	.	ID=gene1183;Name=Y_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05940;old_locus_tag=y1127
NC_004088.1	Protein Homology	CDS	1264023	1265651	.	+	0	ID=cds1132;Parent=gene1183;Dbxref=Genbank:WP_002209759.1;Name=WP_002209759.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209759.1;transl_table=11
NC_004088.1	RefSeq	gene	1265730	1268111	.	-	.	ID=gene1184;Name=Y_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05945;old_locus_tag=y1128
NC_004088.1	Protein Homology	CDS	1265730	1268111	.	-	0	ID=cds1133;Parent=gene1184;Dbxref=Genbank:WP_002209758.1;Name=WP_002209758.1;gbkey=CDS;product=beta-glucosidase;protein_id=WP_002209758.1;transl_table=11
NC_004088.1	RefSeq	gene	1268270	1268800	.	-	.	ID=gene1185;Name=Y_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05950;old_locus_tag=y1129
NC_004088.1	Protein Homology	CDS	1268270	1268800	.	-	0	ID=cds1134;Parent=gene1185;Dbxref=Genbank:WP_002209757.1;Name=WP_002209757.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209757.1;transl_table=11
NC_004088.1	RefSeq	gene	1268793	1271000	.	-	.	ID=gene1186;Name=Y_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05955;old_locus_tag=y1130
NC_004088.1	Protein Homology	CDS	1268793	1271000	.	-	0	ID=cds1135;Parent=gene1186;Dbxref=Genbank:WP_002209756.1;Name=WP_002209756.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209756.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1271380	1272698	.	+	.	ID=id157;gbkey=repeat_region
NC_004088.1	RefSeq	region	1271381	1272695	.	+	.	ID=id158;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1271452	1272660	.	+	.	ID=gene1187;Name=Y_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05960;old_locus_tag=y1132
NC_004088.1	Protein Homology	CDS	1271452	1272660	.	+	0	ID=cds1136;Parent=gene1187;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	1272739	1273047	.	+	.	ID=gene1188;Name=Y_RS05965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05965;old_locus_tag=y1133
NC_004088.1	Protein Homology	CDS	1272739	1273047	.	+	0	ID=cds1137;Parent=gene1188;Dbxref=Genbank:WP_002209754.1;Name=WP_002209754.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209754.1;transl_table=11
NC_004088.1	RefSeq	gene	1273062	1273643	.	-	.	ID=gene1189;Name=Y_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05970
NC_004088.1	Protein Homology	CDS	1273062	1273643	.	-	0	ID=cds1138;Parent=gene1189;Dbxref=Genbank:WP_002209753.1;Name=WP_002209753.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209753.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1273981	1274154	.	+	.	ID=id159;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1274178	1276094	.	-	.	ID=gene1190;Name=Y_RS05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05975;old_locus_tag=y1134
NC_004088.1	Protein Homology	CDS	1274178	1276094	.	-	0	ID=cds1139;Parent=gene1190;Dbxref=Genbank:WP_002209752.1;Name=WP_002209752.1;gbkey=CDS;product=autotransporter;protein_id=WP_002209752.1;transl_table=11
NC_004088.1	RefSeq	gene	1276903	1277142	.	+	.	ID=gene1191;Name=Y_RS05980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05980
NC_004088.1	Protein Homology	CDS	1276903	1277142	.	+	0	ID=cds1140;Parent=gene1191;Dbxref=Genbank:WP_002209751.1;Name=WP_002209751.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209751.1;transl_table=11
NC_004088.1	RefSeq	gene	1277181	1277432	.	+	.	ID=gene1192;Name=Y_RS05985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05985;old_locus_tag=y1135
NC_004088.1	Protein Homology	CDS	1277181	1277432	.	+	0	ID=cds1141;Parent=gene1192;Dbxref=Genbank:WP_002227852.1;Name=WP_002227852.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002227852.1;transl_table=11
NC_004088.1	RefSeq	gene	1277456	1278028	.	+	.	ID=gene1193;Name=Y_RS05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05990;old_locus_tag=y1136
NC_004088.1	Protein Homology	CDS	1277456	1278028	.	+	0	ID=cds1142;Parent=gene1193;Dbxref=Genbank:WP_002209749.1;Name=WP_002209749.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209749.1;transl_table=11
NC_004088.1	RefSeq	gene	1278040	1278441	.	-	.	ID=gene1194;Name=Y_RS05995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS05995;old_locus_tag=y1137
NC_004088.1	Protein Homology	CDS	1278040	1278441	.	-	0	ID=cds1143;Parent=gene1194;Dbxref=Genbank:WP_002209748.1;Name=WP_002209748.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209748.1;transl_table=11
NC_004088.1	RefSeq	gene	1278674	1279075	.	-	.	ID=gene1195;Name=Y_RS06000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06000;old_locus_tag=y1138
NC_004088.1	Protein Homology	CDS	1278674	1279075	.	-	0	ID=cds1144;Parent=gene1195;Dbxref=Genbank:WP_002209746.1;Name=WP_002209746.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209746.1;transl_table=11
NC_004088.1	RefSeq	gene	1279068	1279271	.	-	.	ID=gene1196;Name=Y_RS06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06005
NC_004088.1	Protein Homology	CDS	1279068	1279271	.	-	0	ID=cds1145;Parent=gene1196;Dbxref=Genbank:WP_002216003.1;Name=WP_002216003.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216003.1;transl_table=11
NC_004088.1	RefSeq	gene	1279343	1279924	.	-	.	ID=gene1197;Name=Y_RS06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06010;old_locus_tag=y1139
NC_004088.1	Protein Homology	CDS	1279343	1279924	.	-	0	ID=cds1146;Parent=gene1197;Dbxref=Genbank:WP_002216002.1;Name=WP_002216002.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216002.1;transl_table=11
NC_004088.1	RefSeq	gene	1280597	1280842	.	+	.	ID=gene1198;Name=Y_RS06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06015;old_locus_tag=y1140
NC_004088.1	Protein Homology	CDS	1280597	1280842	.	+	0	ID=cds1147;Parent=gene1198;Dbxref=Genbank:WP_002209745.1;Name=WP_002209745.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002209745.1;transl_table=11
NC_004088.1	RefSeq	gene	1281055	1283418	.	-	.	ID=gene1199;Name=Y_RS06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06020;old_locus_tag=y1141
NC_004088.1	Protein Homology	CDS	1281055	1283418	.	-	0	ID=cds1148;Parent=gene1199;Dbxref=Genbank:WP_002223314.1;Name=WP_002223314.1;gbkey=CDS;product=penicillin-binding protein 1C;protein_id=WP_002223314.1;transl_table=11
NC_004088.1	RefSeq	gene	1283453	1283623	.	+	.	ID=gene1200;Name=Y_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06025
NC_004088.1	Protein Homology	CDS	1283453	1283623	.	+	0	ID=cds1149;Parent=gene1200;Dbxref=Genbank:WP_025470849.1;Name=WP_025470849.1;gbkey=CDS;product=transposase;protein_id=WP_025470849.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1283465	1284183	.	+	.	ID=id160;gbkey=repeat_region
NC_004088.1	RefSeq	region	1283468	1284177	.	+	.	ID=id161;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1283613	1284071	.	+	.	ID=gene1201;Name=Y_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06030;old_locus_tag=y1142
NC_004088.1	Protein Homology	CDS	1283613	1284071	.	+	0	ID=cds1150;Parent=gene1201;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1284186	1290164	.	-	.	ID=gene1202;Name=Y_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06035;old_locus_tag=y1143
NC_004088.1	Protein Homology	CDS	1284186	1290164	.	-	0	ID=cds1151;Parent=gene1202;Dbxref=Genbank:WP_002210294.1;Name=WP_002210294.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210294.1;transl_table=11
NC_004088.1	RefSeq	gene	1290571	1291119	.	-	.	ID=gene1203;Name=Y_RS06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06040;old_locus_tag=y1144
NC_004088.1	Protein Homology	CDS	1290571	1291119	.	-	0	ID=cds1152;Parent=gene1203;Dbxref=Genbank:WP_002223316.1;Name=WP_002223316.1;gbkey=CDS;product=membrane protein;protein_id=WP_002223316.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1291480	1291750	.	+	.	ID=id162;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1291754	1292608	.	-	.	ID=gene1204;Name=Y_RS06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06045;old_locus_tag=y1145
NC_004088.1	Protein Homology	CDS	1291754	1292608	.	-	0	ID=cds1153;Parent=gene1204;Dbxref=Genbank:WP_002210296.1;Name=WP_002210296.1;gbkey=CDS;product=(Fe-S)-cluster assembly protein;protein_id=WP_002210296.1;transl_table=11
NC_004088.1	RefSeq	gene	1292946	1294472	.	+	.	ID=gene1205;Name=Y_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06050;old_locus_tag=y1146
NC_004088.1	Protein Homology	CDS	1292946	1294472	.	+	0	ID=cds1154;Parent=gene1205;Dbxref=Genbank:WP_002210297.1;Name=WP_002210297.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_002210297.1;transl_table=11
NC_004088.1	RefSeq	gene	1294507	1296432	.	+	.	ID=gene1206;Name=Y_RS06055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06055;old_locus_tag=y1147
NC_004088.1	Protein Homology	CDS	1294507	1296432	.	+	0	ID=cds1155;Parent=gene1206;Dbxref=Genbank:WP_002359655.1;Name=WP_002359655.1;gbkey=CDS;product=3D-(3%2C5/4)-trihydroxycyclohexane-1%2C2-dione hydrolase;protein_id=WP_002359655.1;transl_table=11
NC_004088.1	RefSeq	gene	1296726	1297711	.	+	.	ID=gene1207;Name=Y_RS06060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS06060;pseudo=true
NC_004088.1	Protein Homology	CDS	1296726	1297711	.	+	0	ID=cds1156;Parent=gene1207;exception=annotated by transcript or proteomic data;gbkey=CDS;product=inositol 2-dehydrogenase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	1297819	1298748	.	+	.	ID=gene1208;Name=Y_RS06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06065;old_locus_tag=y1149
NC_004088.1	Protein Homology	CDS	1297819	1298748	.	+	0	ID=cds1157;Parent=gene1208;Dbxref=Genbank:WP_002223320.1;Name=WP_002223320.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002223320.1;transl_table=11
NC_004088.1	RefSeq	gene	1298797	1300344	.	+	.	ID=gene1209;Name=Y_RS06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06070;old_locus_tag=y1150
NC_004088.1	Protein Homology	CDS	1298797	1300344	.	+	0	ID=cds1158;Parent=gene1209;Dbxref=Genbank:WP_002223323.1;Name=WP_002223323.1;Note=with RbsBCD acts to import ribose into the cell%3B RbsA contains 2 ATP-binding domain;gbkey=CDS;product=asparaginase;protein_id=WP_002223323.1;transl_table=11
NC_004088.1	RefSeq	gene	1300356	1301384	.	+	.	ID=gene1210;Name=Y_RS06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06075;old_locus_tag=y1151
NC_004088.1	Protein Homology	CDS	1300356	1301384	.	+	0	ID=cds1159;Parent=gene1210;Dbxref=Genbank:WP_002210302.1;Name=WP_002210302.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002210302.1;transl_table=11
NC_004088.1	RefSeq	gene	1301408	1302541	.	+	.	ID=gene1211;Name=Y_RS06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06080;old_locus_tag=y1152
NC_004088.1	Protein Homology	CDS	1301408	1302541	.	+	0	ID=cds1160;Parent=gene1211;Dbxref=Genbank:WP_002210303.1;Name=WP_002210303.1;gbkey=CDS;product=myo-inositol 2-dehydrogenase;protein_id=WP_002210303.1;transl_table=11
NC_004088.1	RefSeq	gene	1302666	1304543	.	+	.	ID=gene1212;Name=Y_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06085;old_locus_tag=y1153
NC_004088.1	Protein Homology	CDS	1302666	1304543	.	+	0	ID=cds1161;Parent=gene1212;Dbxref=Genbank:WP_002222597.1;Name=WP_002222597.1;gbkey=CDS;product=5-dehydro-2-deoxygluconokinase;protein_id=WP_002222597.1;transl_table=11
NC_004088.1	RefSeq	gene	1304696	1305616	.	+	.	ID=gene1213;Name=Y_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06090;old_locus_tag=y1154
NC_004088.1	Protein Homology	CDS	1304696	1305616	.	+	0	ID=cds1162;Parent=gene1213;Dbxref=Genbank:WP_002227877.1;Name=WP_002227877.1;gbkey=CDS;product=myo-inosose-2 dehydratase;protein_id=WP_002227877.1;transl_table=11
NC_004088.1	RefSeq	gene	1305626	1306441	.	+	.	ID=gene1214;Name=Y_RS06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06095;old_locus_tag=y1155
NC_004088.1	Protein Homology	CDS	1305626	1306441	.	+	0	ID=cds1163;Parent=gene1214;Dbxref=Genbank:WP_002210306.1;Name=WP_002210306.1;gbkey=CDS;product=5-deoxy-glucuronate isomerase;protein_id=WP_002210306.1;transl_table=11
NC_004088.1	RefSeq	gene	1306600	1306803	.	+	.	ID=gene1215;Name=Y_RS06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06100;old_locus_tag=y1156
NC_004088.1	Protein Homology	CDS	1306600	1306803	.	+	0	ID=cds1164;Parent=gene1215;Dbxref=Genbank:WP_002214722.1;Name=WP_002214722.1;gbkey=CDS;product=membrane protein;protein_id=WP_002214722.1;transl_table=11
NC_004088.1	RefSeq	gene	1307011	1308801	.	+	.	ID=gene1216;Name=Y_RS06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06105;old_locus_tag=y1158
NC_004088.1	Protein Homology	CDS	1307011	1308801	.	+	0	ID=cds1165;Parent=gene1216;Dbxref=Genbank:WP_002214723.1;Name=WP_002214723.1;gbkey=CDS;product=metal ABC transporter permease;protein_id=WP_002214723.1;transl_table=11
NC_004088.1	RefSeq	gene	1308817	1309104	.	-	.	ID=gene1217;Name=Y_RS06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06110;old_locus_tag=y1159
NC_004088.1	Protein Homology	CDS	1308817	1309104	.	-	0	ID=cds1166;Parent=gene1217;Dbxref=Genbank:WP_002210309.1;Name=WP_002210309.1;gbkey=CDS;product=antibiotic biosynthesis monooxygenase;protein_id=WP_002210309.1;transl_table=11
NC_004088.1	RefSeq	gene	1309547	1309741	.	+	.	ID=gene1218;Name=Y_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06115;old_locus_tag=y1160
NC_004088.1	Protein Homology	CDS	1309547	1309741	.	+	0	ID=cds1167;Parent=gene1218;Dbxref=Genbank:WP_002210310.1;Name=WP_002210310.1;gbkey=CDS;product=glycogen synthase;protein_id=WP_002210310.1;transl_table=11
NC_004088.1	RefSeq	gene	1309759	1309941	.	-	.	ID=gene1219;Name=Y_RS06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06120;old_locus_tag=y1161
NC_004088.1	Protein Homology	CDS	1309759	1309941	.	-	0	ID=cds1168;Parent=gene1219;Dbxref=Genbank:WP_002210311.1;Name=WP_002210311.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210311.1;transl_table=11
NC_004088.1	RefSeq	gene	1310123	1311088	.	-	.	ID=gene1220;Name=Y_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06125;old_locus_tag=y1163
NC_004088.1	Protein Homology	CDS	1310123	1311088	.	-	0	ID=cds1169;Parent=gene1220;Dbxref=Genbank:WP_002210312.1;Name=WP_002210312.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210312.1;transl_table=11
NC_004088.1	RefSeq	gene	1311538	1312128	.	+	.	ID=gene1221;Name=Y_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06130;old_locus_tag=y1164
NC_004088.1	Protein Homology	CDS	1311538	1312128	.	+	0	ID=cds1170;Parent=gene1221;Dbxref=Genbank:WP_002210313.1;Name=WP_002210313.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_002210313.1;transl_table=11
NC_004088.1	RefSeq	gene	1312428	1312907	.	-	.	ID=gene1222;Name=Y_RS06135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06135;old_locus_tag=y1165
NC_004088.1	Protein Homology	CDS	1312428	1312907	.	-	0	ID=cds1171;Parent=gene1222;Dbxref=Genbank:WP_012229509.1;Name=WP_012229509.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_012229509.1;transl_table=11
NC_004088.1	cmsearch	region	1313013	1313441	.	+	.	ID=id163;Note=cspA;gbkey=misc_feature
NC_004088.1	RefSeq	gene	1313186	1313395	.	+	.	ID=gene1223;Name=Y_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06140;old_locus_tag=y1166
NC_004088.1	Protein Homology	CDS	1313186	1313395	.	+	0	ID=cds1172;Parent=gene1223;Dbxref=Genbank:WP_002210315.1;Name=WP_002210315.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_002210315.1;transl_table=11
NC_004088.1	RefSeq	gene	1313818	1314201	.	-	.	ID=gene1224;Name=Y_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06145;old_locus_tag=y1168
NC_004088.1	Protein Homology	CDS	1313818	1314201	.	-	0	ID=cds1173;Parent=gene1224;Dbxref=Genbank:WP_002210317.1;Name=WP_002210317.1;Note=camphor resistance protein CrcB%3B may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling;gbkey=CDS;product=camphor resistance protein CrcB;protein_id=WP_002210317.1;transl_table=11
NC_004088.1	RefSeq	gene	1314561	1314713	.	+	.	ID=gene1225;Name=Y_RS06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06150;old_locus_tag=y1169
NC_004088.1	Protein Homology	CDS	1314561	1314713	.	+	0	ID=cds1174;Parent=gene1225;Dbxref=Genbank:WP_002210318.1;Name=WP_002210318.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210318.1;transl_table=11
NC_004088.1	RefSeq	gene	1314768	1315025	.	+	.	ID=gene1226;Name=Y_RS06155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06155;old_locus_tag=y1170
NC_004088.1	Protein Homology	CDS	1314768	1315025	.	+	0	ID=cds1175;Parent=gene1226;Dbxref=Genbank:WP_002210319.1;Name=WP_002210319.1;gbkey=CDS;product=sec-independent protein translocase tatE;protein_id=WP_002210319.1;transl_table=11
NC_004088.1	RefSeq	gene	1315206	1316171	.	-	.	ID=gene1227;Name=Y_RS06160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06160;old_locus_tag=y1171
NC_004088.1	Protein Homology	CDS	1315206	1316171	.	-	0	ID=cds1176;Parent=gene1227;Dbxref=Genbank:WP_002210320.1;Name=WP_002210320.1;Note=catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group;gbkey=CDS;product=lipoyl synthase;protein_id=WP_002210320.1;transl_table=11
NC_004088.1	RefSeq	gene	1316364	1317065	.	-	.	ID=gene1228;Name=Y_RS06165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06165;old_locus_tag=y1173
NC_004088.1	Protein Homology	CDS	1316364	1317065	.	-	0	ID=cds1177;Parent=gene1228;Dbxref=Genbank:WP_002218201.1;Name=WP_002218201.1;Note=lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein;gbkey=CDS;product=octanoyltransferase;protein_id=WP_002218201.1;transl_table=11
NC_004088.1	RefSeq	gene	1317277	1317540	.	-	.	ID=gene1229;Name=Y_RS06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06170;old_locus_tag=y1174
NC_004088.1	Protein Homology	CDS	1317277	1317540	.	-	0	ID=cds1178;Parent=gene1229;Dbxref=Genbank:WP_002210322.1;Name=WP_002210322.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210322.1;transl_table=11
NC_004088.1	RefSeq	gene	1317738	1318940	.	-	.	ID=gene1230;Name=Y_RS06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06175;old_locus_tag=y1175
NC_004088.1	Protein Homology	CDS	1317738	1318940	.	-	0	ID=cds1179;Parent=gene1230;Dbxref=Genbank:WP_002210323.1;Name=WP_002210323.1;Note=penicillin-binding protein 5%3B removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_002210323.1;transl_table=11
NC_004088.1	RefSeq	gene	1319343	1320425	.	-	.	ID=gene1231;Name=Y_RS06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06180;old_locus_tag=y1176
NC_004088.1	Protein Homology	CDS	1319343	1320425	.	-	0	ID=cds1180;Parent=gene1231;Dbxref=Genbank:WP_002210324.1;Name=WP_002210324.1;Note=septal ring protein%2C suppressor of prc%2C minor lipoprotein;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210324.1;transl_table=11
NC_004088.1	RefSeq	gene	1320435	1321547	.	-	.	ID=gene1232;Name=Y_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06185;old_locus_tag=y1177
NC_004088.1	Protein Homology	CDS	1320435	1321547	.	-	0	ID=cds1181;Parent=gene1232;Dbxref=Genbank:WP_002210325.1;Name=WP_002210325.1;gbkey=CDS;product=cell wall shape-determining protein;protein_id=WP_002210325.1;transl_table=11
NC_004088.1	RefSeq	gene	1321732	1323627	.	-	.	ID=gene1233;Name=Y_RS06190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06190;old_locus_tag=y1178
NC_004088.1	Protein Homology	CDS	1321732	1323627	.	-	0	ID=cds1182;Parent=gene1233;Dbxref=Genbank:WP_002210326.1;Name=WP_002210326.1;gbkey=CDS;product=penicillin-binding protein 2;protein_id=WP_002210326.1;transl_table=11
NC_004088.1	RefSeq	gene	1323709	1324179	.	-	.	ID=gene1234;Name=Y_RS06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06195;old_locus_tag=y1179
NC_004088.1	Protein Homology	CDS	1323709	1324179	.	-	0	ID=cds1183;Parent=gene1234;Dbxref=Genbank:WP_002210328.1;Name=WP_002210328.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase H;protein_id=WP_002210328.1;transl_table=11
NC_004088.1	RefSeq	gene	1324183	1324500	.	-	.	ID=gene1235;Name=Y_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06200;old_locus_tag=y1180
NC_004088.1	Protein Homology	CDS	1324183	1324500	.	-	0	ID=cds1184;Parent=gene1235;Dbxref=Genbank:WP_002210329.1;Name=WP_002210329.1;gbkey=CDS;product=ribosome silencing factor RsfS;protein_id=WP_002210329.1;transl_table=11
NC_004088.1	RefSeq	gene	1324724	1325386	.	-	.	ID=gene1236;Name=Y_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06205;old_locus_tag=y1181
NC_004088.1	Protein Homology	CDS	1324724	1325386	.	-	0	ID=cds1185;Parent=gene1236;Dbxref=Genbank:WP_002210330.1;Name=WP_002210330.1;gbkey=CDS;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_002210330.1;transl_table=11
NC_004088.1	RefSeq	gene	1325376	1326410	.	-	.	ID=gene1237;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=Y_RS06210;old_locus_tag=y1182
NC_004088.1	Protein Homology	CDS	1325376	1326410	.	-	0	ID=cds1186;Parent=gene1237;Dbxref=Genbank:WP_002210331.1;Name=WP_002210331.1;Note=required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA;gbkey=CDS;gene=holA;product=DNA polymerase III subunit delta;protein_id=WP_002210331.1;transl_table=11
NC_004088.1	RefSeq	gene	1326407	1327030	.	-	.	ID=gene1238;Name=Y_RS06215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06215;old_locus_tag=y1183
NC_004088.1	Protein Homology	CDS	1326407	1327030	.	-	0	ID=cds1187;Parent=gene1238;Dbxref=Genbank:WP_002210332.1;Name=WP_002210332.1;Note=rare lipoprotein B%3B involved in the assembly of LPS in the outer membrane;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210332.1;transl_table=11
NC_004088.1	RefSeq	gene	1327045	1329627	.	-	.	ID=gene1239;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=Y_RS06220;old_locus_tag=y1184
NC_004088.1	Protein Homology	CDS	1327045	1329627	.	-	0	ID=cds1188;Parent=gene1239;Dbxref=Genbank:WP_002210333.1;Name=WP_002210333.1;Note=leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase;gbkey=CDS;gene=leuS;product=leucine--tRNA ligase;protein_id=WP_002210333.1;transl_table=11
NC_004088.1	RefSeq	gene	1329888	1330370	.	+	.	ID=gene1240;Name=Y_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06225;old_locus_tag=y1185
NC_004088.1	Protein Homology	CDS	1329888	1330370	.	+	0	ID=cds1189;Parent=gene1240;Dbxref=Genbank:WP_002210335.1;Name=WP_002210335.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210335.1;transl_table=11
NC_004088.1	RefSeq	gene	1330504	1331229	.	-	.	ID=gene1241;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=Y_RS06230;old_locus_tag=y1186
NC_004088.1	Protein Homology	CDS	1330504	1331229	.	-	0	ID=cds1190;Parent=gene1241;Dbxref=Genbank:WP_002210336.1;Name=WP_002210336.1;Note=With ArtMQJI transports arginine across the inner membrane;gbkey=CDS;gene=artP;product=arginine ABC transporter ATP-binding protein;protein_id=WP_002210336.1;transl_table=11
NC_004088.1	RefSeq	gene	1331229	1331903	.	-	.	ID=gene1242;Name=Y_RS06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06235;old_locus_tag=y1187
NC_004088.1	Protein Homology	CDS	1331229	1331903	.	-	0	ID=cds1191;Parent=gene1242;Dbxref=Genbank:WP_002210337.1;Name=WP_002210337.1;gbkey=CDS;product=glutamate/aspartate transporter permease GltK;protein_id=WP_002210337.1;transl_table=11
NC_004088.1	RefSeq	gene	1331903	1332643	.	-	.	ID=gene1243;Name=Y_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06240;old_locus_tag=y1188
NC_004088.1	Protein Homology	CDS	1331903	1332643	.	-	0	ID=cds1192;Parent=gene1243;Dbxref=Genbank:WP_002223337.1;Name=WP_002223337.1;Note=with GltIKL is involved in the transport of glutamate and aspartate;gbkey=CDS;product=glutamate/aspartate ABC transporter permease GltJ;protein_id=WP_002223337.1;transl_table=11
NC_004088.1	RefSeq	gene	1332817	1333734	.	-	.	ID=gene1244;Name=Y_RS06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06245;old_locus_tag=y1189
NC_004088.1	Protein Homology	CDS	1332817	1333734	.	-	0	ID=cds1193;Parent=gene1244;Dbxref=Genbank:WP_002210339.1;Name=WP_002210339.1;gbkey=CDS;product=amino acid transporter;protein_id=WP_002210339.1;transl_table=11
NC_004088.1	RefSeq	gene	1334499	1336046	.	-	.	ID=gene1245;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=Y_RS06250;old_locus_tag=y1190
NC_004088.1	Protein Homology	CDS	1334499	1336046	.	-	0	ID=cds1194;Parent=gene1245;Dbxref=Genbank:WP_002210341.1;Name=WP_002210341.1;Note=Transfers the fatty acyl group on membrane lipoproteins;gbkey=CDS;gene=lnt;product=apolipoprotein N-acyltransferase;protein_id=WP_002210341.1;transl_table=11
NC_004088.1	RefSeq	gene	1336054	1336932	.	-	.	ID=gene1246;Name=Y_RS06255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06255;old_locus_tag=y1191
NC_004088.1	Protein Homology	CDS	1336054	1336932	.	-	0	ID=cds1195;Parent=gene1246;Dbxref=Genbank:WP_002210342.1;Name=WP_002210342.1;Note=involved in the transport of magnesium and cobalt ions;gbkey=CDS;product=cobalt transporter;protein_id=WP_002210342.1;transl_table=11
NC_004088.1	RefSeq	gene	1337050	1337523	.	-	.	ID=gene1247;Name=Y_RS06260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06260;old_locus_tag=y1193
NC_004088.1	Protein Homology	CDS	1337050	1337523	.	-	0	ID=cds1196;Parent=gene1247;Dbxref=Genbank:WP_002210344.1;Name=WP_002210344.1;gbkey=CDS;product=endoribonuclease YbeY;protein_id=WP_002210344.1;transl_table=11
NC_004088.1	RefSeq	gene	1337520	1338575	.	-	.	ID=gene1248;Name=Y_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06265;old_locus_tag=y1194
NC_004088.1	Protein Homology	CDS	1337520	1338575	.	-	0	ID=cds1197;Parent=gene1248;Dbxref=Genbank:WP_002354474.1;Name=WP_002354474.1;gbkey=CDS;product=nucleoside triphosphate hydrolase;protein_id=WP_002354474.1;transl_table=11
NC_004088.1	RefSeq	gene	1338920	1340344	.	-	.	ID=gene1249;Name=Y_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06270;old_locus_tag=y1195
NC_004088.1	Protein Homology	CDS	1338920	1340344	.	-	0	ID=cds1198;Parent=gene1249;Dbxref=Genbank:WP_002227875.1;Name=WP_002227875.1;Note=catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A);gbkey=CDS;product=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase;protein_id=WP_002227875.1;transl_table=11
NC_004088.1	RefSeq	gene	1340586	1341767	.	+	.	ID=gene1250;Name=ubiF;gbkey=Gene;gene=ubiF;gene_biotype=protein_coding;gene_synonym=yleB;locus_tag=Y_RS06275;old_locus_tag=y1196
NC_004088.1	Protein Homology	CDS	1340586	1341767	.	+	0	ID=cds1199;Parent=gene1250;Dbxref=Genbank:WP_002210347.1;Name=WP_002210347.1;Note=catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1%2C4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol%3B functions in the biosynthesis of ubiquinone or coenzyme Q;gbkey=CDS;gene=ubiF;product=2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase;protein_id=WP_002210347.1;transl_table=11
NC_004088.1	RefSeq	gene	1342161	1342235	.	-	.	ID=gene1251;Name=Y_RS06280;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS06280;old_locus_tag=yt030
NC_004088.1	tRNAscan-SE	tRNA	1342161	1342235	.	-	.	ID=rna47;Parent=gene1251;anticodon=(pos:complement(1342201..1342203));gbkey=tRNA;product=tRNA-Gln
NC_004088.1	tRNAscan-SE	exon	1342161	1342235	.	-	.	ID=id164;Parent=rna47;anticodon=(pos:complement(1342201..1342203));gbkey=tRNA;product=tRNA-Gln
NC_004088.1	RefSeq	gene	1342241	1342317	.	-	.	ID=gene1252;Name=Y_RS06285;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS06285;old_locus_tag=yt031
NC_004088.1	tRNAscan-SE	tRNA	1342241	1342317	.	-	.	ID=rna48;Parent=gene1252;anticodon=(pos:complement(1342281..1342283));gbkey=tRNA;product=tRNA-Met
NC_004088.1	tRNAscan-SE	exon	1342241	1342317	.	-	.	ID=id165;Parent=rna48;anticodon=(pos:complement(1342281..1342283));gbkey=tRNA;product=tRNA-Met
NC_004088.1	RefSeq	gene	1342350	1342424	.	-	.	ID=gene1253;Name=Y_RS06290;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS06290;old_locus_tag=yt032
NC_004088.1	tRNAscan-SE	tRNA	1342350	1342424	.	-	.	ID=rna49;Parent=gene1253;anticodon=(pos:complement(1342390..1342392));gbkey=tRNA;product=tRNA-Gln
NC_004088.1	tRNAscan-SE	exon	1342350	1342424	.	-	.	ID=id166;Parent=rna49;anticodon=(pos:complement(1342390..1342392));gbkey=tRNA;product=tRNA-Gln
NC_004088.1	RefSeq	gene	1342508	1342582	.	-	.	ID=gene1254;Name=Y_RS06295;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS06295;old_locus_tag=yt033
NC_004088.1	tRNAscan-SE	tRNA	1342508	1342582	.	-	.	ID=rna50;Parent=gene1254;anticodon=(pos:complement(1342548..1342550));gbkey=tRNA;product=tRNA-Gln
NC_004088.1	tRNAscan-SE	exon	1342508	1342582	.	-	.	ID=id167;Parent=rna50;anticodon=(pos:complement(1342548..1342550));gbkey=tRNA;product=tRNA-Gln
NC_004088.1	RefSeq	gene	1342612	1342696	.	-	.	ID=gene1255;Name=Y_RS06300;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS06300;old_locus_tag=yt034
NC_004088.1	tRNAscan-SE	tRNA	1342612	1342696	.	-	.	ID=rna51;Parent=gene1255;anticodon=(pos:complement(1342660..1342662));gbkey=tRNA;product=tRNA-Leu
NC_004088.1	tRNAscan-SE	exon	1342612	1342696	.	-	.	ID=id168;Parent=rna51;anticodon=(pos:complement(1342660..1342662));gbkey=tRNA;product=tRNA-Leu
NC_004088.1	RefSeq	gene	1342704	1342780	.	-	.	ID=gene1256;Name=Y_RS06305;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS06305;old_locus_tag=yt035
NC_004088.1	tRNAscan-SE	tRNA	1342704	1342780	.	-	.	ID=rna52;Parent=gene1256;anticodon=(pos:complement(1342744..1342746));gbkey=tRNA;product=tRNA-Met
NC_004088.1	tRNAscan-SE	exon	1342704	1342780	.	-	.	ID=id169;Parent=rna52;anticodon=(pos:complement(1342744..1342746));gbkey=tRNA;product=tRNA-Met
NC_004088.1	RefSeq	gene	1343052	1343189	.	+	.	ID=gene1257;Name=Y_RS06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06310
NC_004088.1	Protein Homology	CDS	1343052	1343189	.	+	0	ID=cds1200;Parent=gene1257;Dbxref=Genbank:WP_002222587.1;Name=WP_002222587.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002222587.1;transl_table=11
NC_004088.1	RefSeq	gene	1343238	1344902	.	-	.	ID=gene1258;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=Y_RS06315;old_locus_tag=y1198
NC_004088.1	Protein Homology	CDS	1343238	1344902	.	-	0	ID=cds1201;Parent=gene1258;Dbxref=Genbank:WP_002210348.1;Name=WP_002210348.1;Note=functions in asparagine biosynthesis%3B converts glutamine%2C aspartate%2C ATP%2C and water to glutamate%2C asparagine%2C pyrophosphate and AMP;gbkey=CDS;gene=asnB;product=asparagine synthetase B;protein_id=WP_002210348.1;transl_table=11
NC_004088.1	RefSeq	gene	1345257	1346009	.	-	.	ID=gene1259;Name=Y_RS06320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06320;old_locus_tag=y1199
NC_004088.1	Protein Homology	CDS	1345257	1346009	.	-	0	ID=cds1202;Parent=gene1259;Dbxref=Genbank:WP_002210349.1;Name=WP_002210349.1;gbkey=CDS;product=UMP phosphatase;protein_id=WP_002210349.1;transl_table=11
NC_004088.1	RefSeq	gene	1346082	1347308	.	-	.	ID=gene1260;Name=Y_RS06325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06325;old_locus_tag=y1200
NC_004088.1	Protein Homology	CDS	1346082	1347308	.	-	0	ID=cds1203;Parent=gene1260;Dbxref=Genbank:WP_002224863.1;Name=WP_002224863.1;Note=regulates the synthesis of glucosamine and N-acetylglucosamine by acting as a repressor of the nagEBACD operon and both a repressor and activator of the glmSU operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002224863.1;transl_table=11
NC_004088.1	RefSeq	gene	1347325	1348470	.	-	.	ID=gene1261;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=Y_RS06330;old_locus_tag=y1201
NC_004088.1	Protein Homology	CDS	1347325	1348470	.	-	0	ID=cds1204;Parent=gene1261;Dbxref=Genbank:WP_002210351.1;Name=WP_002210351.1;Note=catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate;gbkey=CDS;gene=nagA;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_002210351.1;transl_table=11
NC_004088.1	RefSeq	gene	1348490	1349290	.	-	.	ID=gene1262;Name=nagB;gbkey=Gene;gene=nagB;gene_biotype=protein_coding;locus_tag=Y_RS06335;old_locus_tag=y1202
NC_004088.1	Protein Homology	CDS	1348490	1349290	.	-	0	ID=cds1205;Parent=gene1262;Dbxref=Genbank:WP_002210352.1;Name=WP_002210352.1;Note=catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate;gbkey=CDS;gene=nagB;product=glucosamine-6-phosphate deaminase;protein_id=WP_002210352.1;transl_table=11
NC_004088.1	RefSeq	gene	1349689	1351722	.	+	.	ID=gene1263;Name=Y_RS06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06340;old_locus_tag=y1203
NC_004088.1	Protein Homology	CDS	1349689	1351722	.	+	0	ID=cds1206;Parent=gene1263;Dbxref=Genbank:WP_002210353.1;Name=WP_002210353.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS N-acetylglucosamine transporter subunit IIABC;protein_id=WP_002210353.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1351834	1352557	.	+	.	ID=id170;gbkey=repeat_region
NC_004088.1	RefSeq	region	1351842	1352551	.	+	.	ID=id171;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1351987	1352445	.	+	.	ID=gene1264;Name=Y_RS06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06345;old_locus_tag=y1204
NC_004088.1	Protein Homology	CDS	1351987	1352445	.	+	0	ID=cds1207;Parent=gene1264;Dbxref=Genbank:WP_025471128.1;Name=WP_025471128.1;gbkey=CDS;product=transposase;protein_id=WP_025471128.1;transl_table=11
NC_004088.1	RefSeq	gene	1352647	1354314	.	+	.	ID=gene1265;Name=Y_RS06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06350;old_locus_tag=y1205
NC_004088.1	Protein Homology	CDS	1352647	1354314	.	+	0	ID=cds1208;Parent=gene1265;Dbxref=Genbank:WP_002210354.1;Name=WP_002210354.1;Note=catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;product=glutamine--tRNA ligase;protein_id=WP_002210354.1;transl_table=11
NC_004088.1	RefSeq	gene	1355020	1356441	.	+	.	ID=gene1266;Name=chiP;gbkey=Gene;gene=chiP;gene_biotype=protein_coding;locus_tag=Y_RS06355;old_locus_tag=y1206
NC_004088.1	Protein Homology	CDS	1355020	1356441	.	+	0	ID=cds1209;Parent=gene1266;Dbxref=Genbank:WP_002210355.1;Name=WP_002210355.1;Note=outer membrane porin involved in the transport of chitooligosaccharides;gbkey=CDS;gene=chiP;product=porin;protein_id=WP_002210355.1;transl_table=11
NC_004088.1	RefSeq	gene	1356769	1359433	.	+	.	ID=gene1267;Name=Y_RS06360;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS06360;pseudo=true
NC_004088.1	Protein Homology	CDS	1356769	1359433	.	+	0	ID=cds1210;Parent=gene1267;exception=annotated by transcript or proteomic data;gbkey=CDS;product=beta-N-acetylhexosaminidase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	1359874	1360320	.	-	.	ID=gene1268;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=Y_RS06365;old_locus_tag=y1208
NC_004088.1	Protein Homology	CDS	1359874	1360320	.	-	0	ID=cds1211;Parent=gene1268;Dbxref=Genbank:WP_002210357.1;Name=WP_002210357.1;Note=negatively regulates a number of operons that encode enzymes involved in iron transport%3B activated by manganese%3B forms a homodimer;gbkey=CDS;gene=fur;product=ferric uptake regulation protein;protein_id=WP_002210357.1;transl_table=11
NC_004088.1	RefSeq	gene	1360687	1361214	.	-	.	ID=gene1269;Name=Y_RS06370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06370;old_locus_tag=y1209
NC_004088.1	Protein Homology	CDS	1360687	1361214	.	-	0	ID=cds1212;Parent=gene1269;Dbxref=Genbank:WP_002215386.1;Name=WP_002215386.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=flavodoxin;protein_id=WP_002215386.1;transl_table=11
NC_004088.1	RefSeq	gene	1361631	1361918	.	-	.	ID=gene1270;Name=Y_RS06375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06375;old_locus_tag=y1211
NC_004088.1	Protein Homology	CDS	1361631	1361918	.	-	0	ID=cds1213;Parent=gene1270;Dbxref=Genbank:WP_002212202.1;Name=WP_002212202.1;gbkey=CDS;product=LexA regulated protein;protein_id=WP_002212202.1;transl_table=11
NC_004088.1	RefSeq	gene	1361973	1362098	.	+	.	ID=gene1271;Name=Y_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06380
NC_004088.1	Protein Homology	CDS	1361973	1362098	.	+	0	ID=cds1214;Parent=gene1271;Dbxref=Genbank:WP_002215389.1;Name=WP_002215389.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215389.1;transl_table=11
NC_004088.1	RefSeq	gene	1362250	1363017	.	-	.	ID=gene1272;Name=Y_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06385;old_locus_tag=y1212
NC_004088.1	Protein Homology	CDS	1362250	1363017	.	-	0	ID=cds1215;Parent=gene1272;Dbxref=Genbank:WP_002215390.1;Name=WP_002215390.1;gbkey=CDS;product=acyl-CoA esterase;protein_id=WP_002215390.1;transl_table=11
NC_004088.1	RefSeq	gene	1363728	1363979	.	+	.	ID=gene1273;Name=Y_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06390
NC_004088.1	Protein Homology	CDS	1363728	1363979	.	+	0	ID=cds1216;Parent=gene1273;Dbxref=Genbank:WP_002212204.1;Name=WP_002212204.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212204.1;transl_table=11
NC_004088.1	RefSeq	gene	1364142	1364327	.	-	.	ID=gene1274;Name=Y_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06395;old_locus_tag=y1213
NC_004088.1	Protein Homology	CDS	1364142	1364327	.	-	0	ID=cds1217;Parent=gene1274;Dbxref=Genbank:WP_011055361.1;Name=WP_011055361.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011055361.1;transl_table=11
NC_004088.1	RefSeq	gene	1364410	1364673	.	-	.	ID=gene1275;Name=Y_RS06400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06400;old_locus_tag=y1214
NC_004088.1	Protein Homology	CDS	1364410	1364673	.	-	0	ID=cds1218;Parent=gene1275;Dbxref=Genbank:WP_002212205.1;Name=WP_002212205.1;gbkey=CDS;product=transposase;protein_id=WP_002212205.1;transl_table=11
NC_004088.1	RefSeq	gene	1364743	1365207	.	-	.	ID=gene1276;Name=Y_RS06405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS06405;old_locus_tag=y1215;partial=true;pseudo=true;start_range=.,1364743
NC_004088.1	Protein Homology	CDS	1364743	1365207	.	-	0	ID=cds1219;Parent=gene1276;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1364743;transl_table=11
NC_004088.1	RefSeq	repeat_region	1365152	1367110	.	+	.	ID=id172;gbkey=repeat_region
NC_004088.1	RefSeq	region	1365154	1367107	.	-	.	ID=id173;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1365220	1365999	.	-	.	ID=gene1277;Name=Y_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06410;old_locus_tag=y1216
NC_004088.1	Protein Homology	CDS	1365220	1365999	.	-	0	ID=cds1220;Parent=gene1277;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	1365999	1367021	.	-	.	ID=gene1278;Name=Y_RS06415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06415;old_locus_tag=y1217
NC_004088.1	Protein Homology	CDS	1365999	1367021	.	-	0	ID=cds1221;Parent=gene1278;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	1367108	1367845	.	+	.	ID=gene1279;Name=Y_RS06420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS06420;old_locus_tag=y1218;partial=true;pseudo=true;start_range=.,1367108
NC_004088.1	Protein Homology	CDS	1367108	1367845	.	+	0	ID=cds1222;Parent=gene1279;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=allantoinase;pseudo=true;start_range=.,1367108;transl_table=11
NC_004088.1	RefSeq	repeat_region	1367874	1368044	.	+	.	ID=id174;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1368075	1369079	.	-	.	ID=gene1280;Name=proX;gbkey=Gene;gene=proX;gene_biotype=protein_coding;locus_tag=Y_RS06425;old_locus_tag=y1219
NC_004088.1	Protein Homology	CDS	1368075	1369079	.	-	0	ID=cds1223;Parent=gene1280;Dbxref=Genbank:WP_002215933.1;Name=WP_002215933.1;Note=with ProVW%2C part of the high-affinity transport system for the osmoprotectant glycine betaine;gbkey=CDS;gene=proX;product=glycine/betaine ABC transporter substrate-binding protein;protein_id=WP_002215933.1;transl_table=11
NC_004088.1	RefSeq	gene	1369127	1370293	.	-	.	ID=gene1281;Name=Y_RS06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06430;old_locus_tag=y1220
NC_004088.1	Protein Homology	CDS	1369127	1370293	.	-	0	ID=cds1224;Parent=gene1281;Dbxref=Genbank:WP_002212209.1;Name=WP_002212209.1;Note=with ProVX is involved in the high-affinity uptake of glycine betaine;gbkey=CDS;product=glycine/betaine ABC transporter permease;protein_id=WP_002212209.1;transl_table=11
NC_004088.1	RefSeq	gene	1370286	1371485	.	-	.	ID=gene1282;Name=Y_RS06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06435;old_locus_tag=y1221
NC_004088.1	Protein Homology	CDS	1370286	1371485	.	-	0	ID=cds1225;Parent=gene1282;Dbxref=Genbank:WP_002212210.1;Name=WP_002212210.1;Note=with ProWX is involved in the high-affinity uptake of glycine betaine;gbkey=CDS;product=glycine/betaine ABC transporter ATP-binding protein;protein_id=WP_002212210.1;transl_table=11
NC_004088.1	RefSeq	gene	1372161	1373132	.	-	.	ID=gene1283;Name=Y_RS06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06440;old_locus_tag=y1222
NC_004088.1	Protein Homology	CDS	1372161	1373132	.	-	0	ID=cds1226;Parent=gene1283;Dbxref=Genbank:WP_002212211.1;Name=WP_002212211.1;Note=B2 or R2 protein%3B type 1b enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdE;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_002212211.1;transl_table=11
NC_004088.1	RefSeq	gene	1373257	1375407	.	-	.	ID=gene1284;Name=Y_RS06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06445;old_locus_tag=y1223
NC_004088.1	Protein Homology	CDS	1373257	1375407	.	-	0	ID=cds1227;Parent=gene1284;Dbxref=Genbank:WP_002212212.1;Name=WP_002212212.1;Note=Catalyzes the rate-limiting step in dNTP synthesis;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=WP_002212212.1;transl_table=11
NC_004088.1	RefSeq	gene	1375389	1375792	.	-	.	ID=gene1285;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=pseudogene;locus_tag=Y_RS06450;pseudo=true
NC_004088.1	Protein Homology	CDS	1375389	1375792	.	-	0	ID=cds1228;Parent=gene1285;Note=in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=nrdI;product=ribonucleotide reductase stimulatory protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	1375806	1376042	.	-	.	ID=gene1286;Name=Y_RS06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06455;old_locus_tag=y1225
NC_004088.1	Protein Homology	CDS	1375806	1376042	.	-	0	ID=cds1229;Parent=gene1286;Dbxref=Genbank:WP_002212214.1;Name=WP_002212214.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_002212214.1;transl_table=11
NC_004088.1	RefSeq	gene	1376580	1376945	.	+	.	ID=gene1287;Name=Y_RS06460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06460;old_locus_tag=y1226
NC_004088.1	Protein Homology	CDS	1376580	1376945	.	+	0	ID=cds1230;Parent=gene1287;Dbxref=Genbank:WP_002212215.1;Name=WP_002212215.1;gbkey=CDS;product=acid shock protein;protein_id=WP_002212215.1;transl_table=11
NC_004088.1	RefSeq	gene	1377423	1377758	.	+	.	ID=gene1288;Name=Y_RS06465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06465;old_locus_tag=y1227
NC_004088.1	Protein Homology	CDS	1377423	1377758	.	+	0	ID=cds1231;Parent=gene1288;Dbxref=Genbank:WP_002212216.1;Name=WP_002212216.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212216.1;transl_table=11
NC_004088.1	RefSeq	gene	1377856	1378305	.	-	.	ID=gene1289;Name=Y_RS06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06470;old_locus_tag=y1228
NC_004088.1	Protein Homology	CDS	1377856	1378305	.	-	0	ID=cds1232;Parent=gene1289;Dbxref=Genbank:WP_002212217.1;Name=WP_002212217.1;gbkey=CDS;product=membrane protein;protein_id=WP_002212217.1;transl_table=11
NC_004088.1	RefSeq	gene	1378470	1378808	.	-	.	ID=gene1290;Name=Y_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06475;old_locus_tag=y1229
NC_004088.1	Protein Homology	CDS	1378470	1378808	.	-	0	ID=cds1233;Parent=gene1290;Dbxref=Genbank:WP_002224857.1;Name=WP_002224857.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224857.1;transl_table=11
NC_004088.1	cmsearch	region	1379138	1379599	.	+	.	ID=id175;Note=cspA;gbkey=misc_feature
NC_004088.1	RefSeq	gene	1379316	1379528	.	+	.	ID=gene1291;Name=Y_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06480;old_locus_tag=y1230
NC_004088.1	Protein Homology	CDS	1379316	1379528	.	+	0	ID=cds1234;Parent=gene1291;Dbxref=Genbank:WP_002212220.1;Name=WP_002212220.1;gbkey=CDS;product=cold-shock protein CspB;protein_id=WP_002212220.1;transl_table=11
NC_004088.1	RefSeq	gene	1380321	1381898	.	+	.	ID=gene1292;Name=Y_RS06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06485;old_locus_tag=y1231
NC_004088.1	Protein Homology	CDS	1380321	1381898	.	+	0	ID=cds1235;Parent=gene1292;Dbxref=Genbank:WP_002215276.1;Name=WP_002215276.1;gbkey=CDS;product=solute-binding protein;protein_id=WP_002215276.1;transl_table=11
NC_004088.1	RefSeq	gene	1381883	1382866	.	+	.	ID=gene1293;Name=Y_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06490;old_locus_tag=y1232
NC_004088.1	Protein Homology	CDS	1381883	1382866	.	+	0	ID=cds1236;Parent=gene1293;Dbxref=Genbank:WP_002354495.1;Name=WP_002354495.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_002354495.1;transl_table=11
NC_004088.1	RefSeq	gene	1382863	1383669	.	+	.	ID=gene1294;Name=Y_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06495;old_locus_tag=y1233
NC_004088.1	Protein Homology	CDS	1382863	1383669	.	+	0	ID=cds1237;Parent=gene1294;Dbxref=Genbank:WP_002212224.1;Name=WP_002212224.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_002212224.1;transl_table=11
NC_004088.1	RefSeq	gene	1383669	1384475	.	+	.	ID=gene1295;Name=Y_RS06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06500;old_locus_tag=y1234
NC_004088.1	Protein Homology	CDS	1383669	1384475	.	+	0	ID=cds1238;Parent=gene1295;Dbxref=Genbank:WP_002212225.1;Name=WP_002212225.1;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_002212225.1;transl_table=11
NC_004088.1	RefSeq	gene	1384468	1385133	.	+	.	ID=gene1296;Name=Y_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06505;old_locus_tag=y1235
NC_004088.1	Protein Homology	CDS	1384468	1385133	.	+	0	ID=cds1239;Parent=gene1296;Dbxref=Genbank:WP_002212226.1;Name=WP_002212226.1;gbkey=CDS;product=nickel ABC transporter ATP-binding protein;protein_id=WP_002212226.1;transl_table=11
NC_004088.1	RefSeq	gene	1386331	1386633	.	+	.	ID=gene1297;Name=Y_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06510;old_locus_tag=y1237
NC_004088.1	Protein Homology	CDS	1386331	1386633	.	+	0	ID=cds1240;Parent=gene1297;Dbxref=Genbank:WP_002215288.1;Name=WP_002215288.1;gbkey=CDS;product=urease subunit gamma;protein_id=WP_002215288.1;transl_table=11
NC_004088.1	RefSeq	gene	1386686	1387120	.	+	.	ID=gene1298;Name=ureB;gbkey=Gene;gene=ureB;gene_biotype=protein_coding;locus_tag=Y_RS06515;old_locus_tag=y1238
NC_004088.1	Protein Homology	CDS	1386686	1387120	.	+	0	ID=cds1241;Parent=gene1298;Dbxref=Genbank:WP_002212228.1;Name=WP_002212228.1;Note=ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta);gbkey=CDS;gene=ureB;product=urease subunit beta;protein_id=WP_002212228.1;transl_table=11
NC_004088.1	RefSeq	gene	1387210	1388928	.	+	.	ID=gene1299;Name=ureC;gbkey=Gene;gene=ureC;gene_biotype=protein_coding;locus_tag=Y_RS06520;old_locus_tag=y1239
NC_004088.1	Protein Homology	CDS	1387210	1388928	.	+	0	ID=cds1242;Parent=gene1299;Dbxref=Genbank:WP_002212229.1;Name=WP_002212229.1;Note=ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits;gbkey=CDS;gene=ureC;product=urease subunit alpha;protein_id=WP_002212229.1;transl_table=11
NC_004088.1	RefSeq	gene	1389224	1389919	.	+	.	ID=gene1300;Name=ureE;gbkey=Gene;gene=ureE;gene_biotype=protein_coding;locus_tag=Y_RS06525;old_locus_tag=y1240
NC_004088.1	Protein Homology	CDS	1389224	1389919	.	+	0	ID=cds1243;Parent=gene1300;Dbxref=Genbank:WP_002212230.1;Name=WP_002212230.1;Note=involved in the assembly of the urease metallocenter%3B possible nickel donor;gbkey=CDS;gene=ureE;product=urease accessory protein UreE;protein_id=WP_002212230.1;transl_table=11
NC_004088.1	RefSeq	gene	1389941	1390627	.	+	.	ID=gene1301;Name=Y_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06530;old_locus_tag=y1241
NC_004088.1	Protein Homology	CDS	1389941	1390627	.	+	0	ID=cds1244;Parent=gene1301;Dbxref=Genbank:WP_002212231.1;Name=WP_002212231.1;gbkey=CDS;product=urease accessory protein UreF;protein_id=WP_002212231.1;transl_table=11
NC_004088.1	RefSeq	gene	1390754	1391416	.	+	.	ID=gene1302;Name=Y_RS06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06535;old_locus_tag=y1242
NC_004088.1	Protein Homology	CDS	1390754	1391416	.	+	0	ID=cds1245;Parent=gene1302;Dbxref=Genbank:WP_002212232.1;Name=WP_002212232.1;gbkey=CDS;product=urease accessory protein UreG;protein_id=WP_002212232.1;transl_table=11
NC_004088.1	RefSeq	gene	1391413	1392246	.	+	.	ID=gene1303;Name=Y_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06540
NC_004088.1	Protein Homology	CDS	1391413	1392246	.	+	0	ID=cds1246;Parent=gene1303;Dbxref=Genbank:WP_002228375.1;Name=WP_002228375.1;gbkey=CDS;product=urease accessory protein UreD;protein_id=WP_002228375.1;transl_table=11
NC_004088.1	RefSeq	gene	1392571	1393563	.	+	.	ID=gene1304;Name=Y_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06545;old_locus_tag=y1244
NC_004088.1	Protein Homology	CDS	1392571	1393563	.	+	0	ID=cds1247;Parent=gene1304;Dbxref=Genbank:WP_002212233.1;Name=WP_002212233.1;gbkey=CDS;product=urea transporter;protein_id=WP_002212233.1;transl_table=11
NC_004088.1	RefSeq	gene	1393712	1394770	.	+	.	ID=gene1305;Name=Y_RS06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06550;old_locus_tag=y1245
NC_004088.1	Protein Homology	CDS	1393712	1394770	.	+	0	ID=cds1248;Parent=gene1305;Dbxref=Genbank:WP_002212234.1;Name=WP_002212234.1;gbkey=CDS;product=nickel transporter;protein_id=WP_002212234.1;transl_table=11
NC_004088.1	RefSeq	gene	1394939	1395268	.	-	.	ID=gene1306;Name=Y_RS06555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06555;old_locus_tag=y1246
NC_004088.1	Protein Homology	CDS	1394939	1395268	.	-	0	ID=cds1249;Parent=gene1306;Dbxref=Genbank:WP_002212235.1;Name=WP_002212235.1;gbkey=CDS;product=acid-resistance protein;protein_id=WP_002212235.1;transl_table=11
NC_004088.1	RefSeq	gene	1395267	1395497	.	+	.	ID=gene1307;Name=Y_RS06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06560
NC_004088.1	Protein Homology	CDS	1395267	1395497	.	+	0	ID=cds1250;Parent=gene1307;Dbxref=Genbank:WP_002215289.1;Name=WP_002215289.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215289.1;transl_table=11
NC_004088.1	RefSeq	gene	1395886	1397061	.	+	.	ID=gene1308;Name=Y_RS06565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06565;old_locus_tag=y1247
NC_004088.1	Protein Homology	CDS	1395886	1397061	.	+	0	ID=cds1251;Parent=gene1308;Dbxref=Genbank:WP_002212236.1;Name=WP_002212236.1;gbkey=CDS;product=voltage-gated potassium channel;protein_id=WP_002212236.1;transl_table=11
NC_004088.1	RefSeq	gene	1397159	1397563	.	-	.	ID=gene1309;Name=ccrB;gbkey=Gene;gene=ccrB;gene_biotype=protein_coding;locus_tag=Y_RS06570;old_locus_tag=y1248
NC_004088.1	Protein Homology	CDS	1397159	1397563	.	-	0	ID=cds1252;Parent=gene1309;Dbxref=Genbank:WP_002212237.1;Name=WP_002212237.1;Note=may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling;gbkey=CDS;gene=ccrB;product=camphor resistance protein CrcB;protein_id=WP_002212237.1;transl_table=11
NC_004088.1	RefSeq	gene	1397579	1397959	.	-	.	ID=gene1310;Name=Y_RS06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06575;old_locus_tag=y1249
NC_004088.1	Protein Homology	CDS	1397579	1397959	.	-	0	ID=cds1253;Parent=gene1310;Dbxref=Genbank:WP_002212238.1;Name=WP_002212238.1;gbkey=CDS;product=chromosome condensation protein CrcB;protein_id=WP_002212238.1;transl_table=11
NC_004088.1	RefSeq	gene	1398048	1398227	.	-	.	ID=gene1311;Name=Y_RS06580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06580;old_locus_tag=y1250
NC_004088.1	Protein Homology	CDS	1398048	1398227	.	-	0	ID=cds1254;Parent=gene1311;Dbxref=Genbank:WP_002212239.1;Name=WP_002212239.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212239.1;transl_table=11
NC_004088.1	RefSeq	gene	1399000	1399317	.	+	.	ID=gene1312;Name=Y_RS06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06585;old_locus_tag=y1251
NC_004088.1	Protein Homology	CDS	1399000	1399317	.	+	0	ID=cds1255;Parent=gene1312;Dbxref=Genbank:WP_002212240.1;Name=WP_002212240.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=PTS N'-diacetylchitobiose transporter subunit IIB;protein_id=WP_002212240.1;transl_table=11
NC_004088.1	RefSeq	gene	1399328	1400689	.	+	.	ID=gene1313;Name=Y_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06590;old_locus_tag=y1252
NC_004088.1	Protein Homology	CDS	1399328	1400689	.	+	0	ID=cds1256;Parent=gene1313;Dbxref=Genbank:WP_002212241.1;Name=WP_002212241.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=PTS N'-diacetylchitobiose transporter subunit IIC;protein_id=WP_002212241.1;transl_table=11
NC_004088.1	RefSeq	gene	1400856	1401203	.	+	.	ID=gene1314;Name=Y_RS06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06595;old_locus_tag=y1253
NC_004088.1	Protein Homology	CDS	1400856	1401203	.	+	0	ID=cds1257;Parent=gene1314;Dbxref=Genbank:WP_002212242.1;Name=WP_002212242.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=PTS N'-diacetylchitobiose transporter subunit IIA;protein_id=WP_002212242.1;transl_table=11
NC_004088.1	RefSeq	gene	1401252	1402082	.	+	.	ID=gene1315;Name=Y_RS06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06600;old_locus_tag=y1254
NC_004088.1	Protein Homology	CDS	1401252	1402082	.	+	0	ID=cds1258;Parent=gene1315;Dbxref=Genbank:WP_002212243.1;Name=WP_002212243.1;Note=represses the celABCDF-ydjC operon involved in carbon uptake;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002212243.1;transl_table=11
NC_004088.1	RefSeq	gene	1402134	1402895	.	+	.	ID=gene1316;Name=Y_RS06605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06605;old_locus_tag=y1255
NC_004088.1	Protein Homology	CDS	1402134	1402895	.	+	0	ID=cds1259;Parent=gene1316;Dbxref=Genbank:WP_002212244.1;Name=WP_002212244.1;gbkey=CDS;product=chitooligosaccharide deacetylase;protein_id=WP_002212244.1;transl_table=11
NC_004088.1	RefSeq	gene	1402902	1403078	.	-	.	ID=gene1317;Name=Y_RS06610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06610
NC_004088.1	Protein Homology	CDS	1402902	1403078	.	-	0	ID=cds1260;Parent=gene1317;Dbxref=Genbank:WP_002212245.1;Name=WP_002212245.1;gbkey=CDS;product=membrane protein;protein_id=WP_002212245.1;transl_table=11
NC_004088.1	RefSeq	gene	1403190	1403558	.	-	.	ID=gene1318;Name=Y_RS06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06615;old_locus_tag=y1256
NC_004088.1	Protein Homology	CDS	1403190	1403558	.	-	0	ID=cds1261;Parent=gene1318;Dbxref=Genbank:WP_002212246.1;Name=WP_002212246.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212246.1;transl_table=11
NC_004088.1	RefSeq	gene	1404053	1404580	.	+	.	ID=gene1319;Name=Y_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06620;old_locus_tag=y1257
NC_004088.1	Protein Homology	CDS	1404053	1404580	.	+	0	ID=cds1262;Parent=gene1319;Dbxref=Genbank:WP_002212248.1;Name=WP_002212248.1;Note=negative modulator of the initiation of chromosome replication;gbkey=CDS;product=N-carbamyl-L-amino acid amidohydrolase;protein_id=WP_002212248.1;transl_table=11
NC_004088.1	RefSeq	gene	1404653	1406296	.	+	.	ID=gene1320;Name=Y_RS06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06625;old_locus_tag=y1258
NC_004088.1	Protein Homology	CDS	1404653	1406296	.	+	0	ID=cds1263;Parent=gene1320;Dbxref=Genbank:WP_002216360.1;Name=WP_002216360.1;Note=catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate;gbkey=CDS;product=phosphoglucomutase;protein_id=WP_002216360.1;transl_table=11
NC_004088.1	RefSeq	gene	1406514	1406627	.	+	.	ID=gene1321;Name=Y_RS06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06630;old_locus_tag=y1259
NC_004088.1	Protein Homology	CDS	1406514	1406627	.	+	0	ID=cds1264;Parent=gene1321;Dbxref=Genbank:WP_002216362.1;Name=WP_002216362.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216362.1;transl_table=11
NC_004088.1	RefSeq	gene	1406670	1406912	.	+	.	ID=gene1322;Name=Y_RS06635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06635
NC_004088.1	Protein Homology	CDS	1406670	1406912	.	+	0	ID=cds1265;Parent=gene1322;Dbxref=Genbank:WP_002209646.1;Name=WP_002209646.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209646.1;transl_table=11
NC_004088.1	RefSeq	gene	1407040	1407468	.	-	.	ID=gene1323;Name=Y_RS06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06640;old_locus_tag=y1260
NC_004088.1	Protein Homology	CDS	1407040	1407468	.	-	0	ID=cds1266;Parent=gene1323;Dbxref=Genbank:WP_002209647.1;Name=WP_002209647.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209647.1;transl_table=11
NC_004088.1	RefSeq	gene	1407563	1408249	.	-	.	ID=gene1324;Name=Y_RS06645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06645;old_locus_tag=y1261
NC_004088.1	Protein Homology	CDS	1407563	1408249	.	-	0	ID=cds1267;Parent=gene1324;Dbxref=Genbank:WP_029562574.1;Name=WP_029562574.1;Note=response regulator in two-component regulatory system with KdpD%3B regulates the kdp operon involved in potassium transport;gbkey=CDS;product=two-component system response regulator;protein_id=WP_029562574.1;transl_table=11
NC_004088.1	RefSeq	gene	1408485	1411211	.	-	.	ID=gene1325;Name=Y_RS06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06650;old_locus_tag=y1262
NC_004088.1	Protein Homology	CDS	1408485	1411211	.	-	0	ID=cds1268;Parent=gene1325;Dbxref=Genbank:WP_002209649.1;Name=WP_002209649.1;Note=sensory histidine kinase in two-component regulatory system with KdpE%3B signal sensing protein;gbkey=CDS;product=two-component system sensor histidine kinase KdpD;protein_id=WP_002209649.1;transl_table=11
NC_004088.1	RefSeq	gene	1411221	1411871	.	-	.	ID=gene1326;Name=Y_RS06655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06655;old_locus_tag=y1263
NC_004088.1	Protein Homology	CDS	1411221	1411871	.	-	0	ID=cds1269;Parent=gene1326;Dbxref=Genbank:WP_002224856.1;Name=WP_002224856.1;Note=One of the components of the high-affinity ATP-driven potassium transport (or KDP)system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex;gbkey=CDS;product=potassium-transporting ATPase subunit C;protein_id=WP_002224856.1;transl_table=11
NC_004088.1	RefSeq	gene	1412035	1414101	.	-	.	ID=gene1327;Name=Y_RS06660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06660;old_locus_tag=y1264
NC_004088.1	Protein Homology	CDS	1412035	1414101	.	-	0	ID=cds1270;Parent=gene1327;Dbxref=Genbank:WP_002209651.1;Name=WP_002209651.1;Note=One of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;gbkey=CDS;product=potassium-transporting ATPase B chain;protein_id=WP_002209651.1;transl_table=11
NC_004088.1	RefSeq	gene	1414195	1415883	.	-	.	ID=gene1328;Name=Y_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06665;old_locus_tag=y1265
NC_004088.1	Protein Homology	CDS	1414195	1415883	.	-	0	ID=cds1271;Parent=gene1328;Dbxref=Genbank:WP_011055369.1;Name=WP_011055369.1;Note=catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;gbkey=CDS;product=potassium-transporting ATPase subunit A;protein_id=WP_011055369.1;transl_table=11
NC_004088.1	RefSeq	gene	1415884	1415973	.	-	.	ID=gene1329;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=Y_RS06670;old_locus_tag=y1266
NC_004088.1	Protein Homology	CDS	1415884	1415973	.	-	0	ID=cds1272;Parent=gene1329;Dbxref=Genbank:WP_002216016.1;Name=WP_002216016.1;Note=one of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;gbkey=CDS;gene=kdpF;product=potassium transporter TrkA;protein_id=WP_002216016.1;transl_table=11
NC_004088.1	RefSeq	gene	1415970	1416212	.	-	.	ID=gene1330;Name=Y_RS06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06675
NC_004088.1	Protein Homology	CDS	1415970	1416212	.	-	0	ID=cds1273;Parent=gene1330;Dbxref=Genbank:WP_002216017.1;Name=WP_002216017.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216017.1;transl_table=11
NC_004088.1	RefSeq	gene	1416378	1416584	.	+	.	ID=gene1331;Name=Y_RS06680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06680
NC_004088.1	Protein Homology	CDS	1416378	1416584	.	+	0	ID=cds1274;Parent=gene1331;Dbxref=Genbank:WP_002209653.1;Name=WP_002209653.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209653.1;transl_table=11
NC_004088.1	RefSeq	gene	1416923	1417405	.	+	.	ID=gene1332;Name=Y_RS06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06685;old_locus_tag=y1268
NC_004088.1	Protein Homology	CDS	1416923	1417405	.	+	0	ID=cds1275;Parent=gene1332;Dbxref=Genbank:WP_002209654.1;Name=WP_002209654.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209654.1;transl_table=11
NC_004088.1	RefSeq	gene	1417535	1418998	.	+	.	ID=gene1333;Name=Y_RS06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06690;old_locus_tag=y1270
NC_004088.1	Protein Homology	CDS	1417535	1418998	.	+	0	ID=cds1276;Parent=gene1333;Dbxref=Genbank:WP_002209655.1;Name=WP_002209655.1;Note=UV-induced DNA repair%3B converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers%3B light dependent;gbkey=CDS;product=deoxyribodipyrimidine photolyase;protein_id=WP_002209655.1;transl_table=11
NC_004088.1	RefSeq	gene	1418989	1420026	.	+	.	ID=gene1334;Name=Y_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06695;old_locus_tag=y1271
NC_004088.1	Protein Homology	CDS	1418989	1420026	.	+	0	ID=cds1277;Parent=gene1334;Dbxref=Genbank:WP_002209656.1;Name=WP_002209656.1;gbkey=CDS;product=3'%2C5'-cyclic-nucleotide phosphodiesterase;protein_id=WP_002209656.1;transl_table=11
NC_004088.1	RefSeq	gene	1420169	1420912	.	+	.	ID=gene1335;Name=Y_RS06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06700;old_locus_tag=y1272
NC_004088.1	Protein Homology	CDS	1420169	1420912	.	+	0	ID=cds1278;Parent=gene1335;Dbxref=Genbank:WP_002354507.1;Name=WP_002354507.1;gbkey=CDS;product=Nif3-like dinuclear metal center hexameric protein;protein_id=WP_002354507.1;transl_table=11
NC_004088.1	RefSeq	gene	1421531	1422187	.	+	.	ID=gene1336;Name=Y_RS06705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS06705;old_locus_tag=y1273;pseudo=true
NC_004088.1	Protein Homology	CDS	1421531	1422187	.	+	0	ID=cds1279;Parent=gene1336;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:1422074..1422076%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	1422181	1423131	.	+	.	ID=gene1337;Name=Y_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06710;old_locus_tag=y1275
NC_004088.1	Protein Homology	CDS	1422181	1423131	.	+	0	ID=cds1280;Parent=gene1337;Dbxref=Genbank:WP_002209658.1;Name=WP_002209658.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209658.1;transl_table=11
NC_004088.1	RefSeq	gene	1423128	1423865	.	+	.	ID=gene1338;Name=Y_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06715;old_locus_tag=y1276
NC_004088.1	Protein Homology	CDS	1423128	1423865	.	+	0	ID=cds1281;Parent=gene1338;Dbxref=Genbank:WP_002209659.1;Name=WP_002209659.1;gbkey=CDS;product=LamB/YcsF family protein;protein_id=WP_002209659.1;transl_table=11
NC_004088.1	RefSeq	gene	1423950	1424681	.	+	.	ID=gene1339;Name=Y_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06720;old_locus_tag=y1277
NC_004088.1	Protein Homology	CDS	1423950	1424681	.	+	0	ID=cds1282;Parent=gene1339;Dbxref=Genbank:WP_002209660.1;Name=WP_002209660.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209660.1;transl_table=11
NC_004088.1	RefSeq	gene	1424678	1425097	.	+	.	ID=gene1340;Name=Y_RS06725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06725;old_locus_tag=y1278
NC_004088.1	Protein Homology	CDS	1424678	1425097	.	+	0	ID=cds1283;Parent=gene1340;Dbxref=Genbank:WP_002232307.1;Name=WP_002232307.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002232307.1;transl_table=11
NC_004088.1	RefSeq	gene	1425146	1425697	.	+	.	ID=gene1341;Name=Y_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06730;old_locus_tag=y1279
NC_004088.1	Protein Homology	CDS	1425146	1425697	.	+	0	ID=cds1284;Parent=gene1341;Dbxref=Genbank:WP_011566305.1;Name=WP_011566305.1;gbkey=CDS;product=membrane protein;protein_id=WP_011566305.1;transl_table=11
NC_004088.1	RefSeq	gene	1425707	1426354	.	+	.	ID=gene1342;Name=Y_RS06735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06735;old_locus_tag=y1280
NC_004088.1	Protein Homology	CDS	1425707	1426354	.	+	0	ID=cds1285;Parent=gene1342;Dbxref=Genbank:WP_002209662.1;Name=WP_002209662.1;gbkey=CDS;product=pyrrolidone-carboxylate peptidase;protein_id=WP_002209662.1;transl_table=11
NC_004088.1	RefSeq	gene	1426445	1427131	.	-	.	ID=gene1343;Name=Y_RS06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06740;old_locus_tag=y1281
NC_004088.1	Protein Homology	CDS	1426445	1427131	.	-	0	ID=cds1286;Parent=gene1343;Dbxref=Genbank:WP_002209663.1;Name=WP_002209663.1;Note=Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine;gbkey=CDS;product=uracil-DNA glycosylase;protein_id=WP_002209663.1;transl_table=11
NC_004088.1	RefSeq	gene	1427482	1427865	.	+	.	ID=gene1344;Name=Y_RS06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06745;old_locus_tag=y1282
NC_004088.1	Protein Homology	CDS	1427482	1427865	.	+	0	ID=cds1287;Parent=gene1344;Dbxref=Genbank:WP_002209664.1;Name=WP_002209664.1;Note=stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit;gbkey=CDS;product=autonomous glycyl radical cofactor GrcA;protein_id=WP_002209664.1;transl_table=11
NC_004088.1	RefSeq	gene	1428044	1429006	.	+	.	ID=gene1345;Name=Y_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06750;old_locus_tag=y1284
NC_004088.1	Protein Homology	CDS	1428044	1429006	.	+	0	ID=cds1288;Parent=gene1345;Dbxref=Genbank:WP_002209665.1;Name=WP_002209665.1;gbkey=CDS;product=phospholipase A;protein_id=WP_002209665.1;transl_table=11
NC_004088.1	RefSeq	gene	1428999	1429097	.	+	.	ID=gene1346;Name=Y_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06755
NC_004088.1	Protein Homology	CDS	1428999	1429097	.	+	0	ID=cds1289;Parent=gene1346;Dbxref=Genbank:WP_002228379.1;Name=WP_002228379.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228379.1;transl_table=11
NC_004088.1	RefSeq	gene	1429084	1429740	.	+	.	ID=gene1347;Name=Y_RS06760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06760;old_locus_tag=y1285
NC_004088.1	Protein Homology	CDS	1429084	1429740	.	+	0	ID=cds1290;Parent=gene1347;Dbxref=Genbank:WP_002209667.1;Name=WP_002209667.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209667.1;transl_table=11
NC_004088.1	RefSeq	gene	1429871	1431196	.	-	.	ID=gene1348;Name=Y_RS06765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06765;old_locus_tag=y1287
NC_004088.1	Protein Homology	CDS	1429871	1431196	.	-	0	ID=cds1291;Parent=gene1348;Dbxref=Genbank:WP_002209669.1;Name=WP_002209669.1;Note=facilitates an early step in the assembly of the 50S subunit of the ribosome;gbkey=CDS;product=ATP-dependent RNA helicase SrmB;protein_id=WP_002209669.1;transl_table=11
NC_004088.1	RefSeq	gene	1431448	1432194	.	+	.	ID=gene1349;Name=Y_RS06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06770;old_locus_tag=y1288
NC_004088.1	Protein Homology	CDS	1431448	1432194	.	+	0	ID=cds1292;Parent=gene1349;Dbxref=Genbank:WP_002223364.1;Name=WP_002223364.1;gbkey=CDS;product=tRNA1(Val) (adenine(37)-N6)-methyltransferase;protein_id=WP_002223364.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1432262	1432438	.	+	.	ID=id176;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1432477	1434114	.	-	.	ID=gene1350;Name=Y_RS06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06775;old_locus_tag=y1289
NC_004088.1	Protein Homology	CDS	1432477	1434114	.	-	0	ID=cds1293;Parent=gene1350;Dbxref=Genbank:WP_002217781.1;Name=WP_002217781.1;Note=catalyzes the formation of oxaloacetate from L-aspartate;gbkey=CDS;product=L-aspartate oxidase;protein_id=WP_002217781.1;transl_table=11
NC_004088.1	RefSeq	gene	1434302	1434877	.	+	.	ID=gene1351;Name=Y_RS06780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06780;old_locus_tag=y1290
NC_004088.1	Protein Homology	CDS	1434302	1434877	.	+	0	ID=cds1294;Parent=gene1351;Dbxref=Genbank:WP_002209672.1;Name=WP_002209672.1;Note=Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor is involved in heat shock and oxidative stress response;gbkey=CDS;product=RNA polymerase sigma factor AlgU;protein_id=WP_002209672.1;transl_table=11
NC_004088.1	RefSeq	gene	1434903	1435559	.	+	.	ID=gene1352;Name=Y_RS06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06785;old_locus_tag=y1291
NC_004088.1	Protein Homology	CDS	1434903	1435559	.	+	0	ID=cds1295;Parent=gene1352;Dbxref=Genbank:WP_002209673.1;Name=WP_002209673.1;gbkey=CDS;product=anti-RNA polymerase sigma factor SigE;protein_id=WP_002209673.1;transl_table=11
NC_004088.1	RefSeq	gene	1435559	1436515	.	+	.	ID=gene1353;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=Y_RS06790;old_locus_tag=y1292
NC_004088.1	Protein Homology	CDS	1435559	1436515	.	+	0	ID=cds1296;Parent=gene1353;Dbxref=Genbank:WP_002209674.1;Name=WP_002209674.1;Note=periplasmic protein%3B interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP;gbkey=CDS;gene=rseB;product=anti-sigma E factor;protein_id=WP_002209674.1;transl_table=11
NC_004088.1	RefSeq	gene	1436512	1436967	.	+	.	ID=gene1354;Name=Y_RS06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06795;old_locus_tag=y1293
NC_004088.1	Protein Homology	CDS	1436512	1436967	.	+	0	ID=cds1297;Parent=gene1354;Dbxref=Genbank:WP_002209675.1;Name=WP_002209675.1;gbkey=CDS;product=SoxR reducing system protein RseC;protein_id=WP_002209675.1;transl_table=11
NC_004088.1	RefSeq	gene	1436988	1437842	.	-	.	ID=gene1355;Name=Y_RS06800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06800;old_locus_tag=y1294
NC_004088.1	Protein Homology	CDS	1436988	1437842	.	-	0	ID=cds1298;Parent=gene1355;Dbxref=Genbank:WP_002209676.1;Name=WP_002209676.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209676.1;transl_table=11
NC_004088.1	RefSeq	gene	1438342	1440141	.	+	.	ID=gene1356;Name=Y_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06805;old_locus_tag=y1295
NC_004088.1	Protein Homology	CDS	1438342	1440141	.	+	0	ID=cds1299;Parent=gene1356;Dbxref=Genbank:WP_002209677.1;Name=WP_002209677.1;gbkey=CDS;product=elongation factor 4;protein_id=WP_002209677.1;transl_table=11
NC_004088.1	RefSeq	gene	1440151	1441149	.	+	.	ID=gene1357;Name=Y_RS06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06810;old_locus_tag=y1296
NC_004088.1	Protein Homology	CDS	1440151	1441149	.	+	0	ID=cds1300;Parent=gene1357;Dbxref=Genbank:WP_002209678.1;Name=WP_002209678.1;Note=catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins;gbkey=CDS;product=signal peptidase I;protein_id=WP_002209678.1;transl_table=11
NC_004088.1	RefSeq	gene	1441501	1442181	.	+	.	ID=gene1358;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=Y_RS06815;old_locus_tag=y1297
NC_004088.1	Protein Homology	CDS	1441501	1442181	.	+	0	ID=cds1301;Parent=gene1358;Dbxref=Genbank:WP_002209679.1;Name=WP_002209679.1;Note=cytoplasmic enzyme involved in processing rRNA and some mRNAs%3B substrates typically have dsRNA regions%3B forms a homodimer%3B have N-terminal nuclease and C-terminal RNA-binding domains%3B requires magnesium as preferred ion for activity;gbkey=CDS;gene=rnc;product=ribonuclease 3;protein_id=WP_002209679.1;transl_table=11
NC_004088.1	RefSeq	gene	1442178	1443089	.	+	.	ID=gene1359;Name=Y_RS06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06820;old_locus_tag=y1298
NC_004088.1	Protein Homology	CDS	1442178	1443089	.	+	0	ID=cds1302;Parent=gene1359;Dbxref=Genbank:WP_002214829.1;Name=WP_002214829.1;gbkey=CDS;product=GTPase Era;protein_id=WP_002214829.1;transl_table=11
NC_004088.1	RefSeq	gene	1443099	1443824	.	+	.	ID=gene1360;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=Y_RS06825;old_locus_tag=y1299
NC_004088.1	Protein Homology	CDS	1443099	1443824	.	+	0	ID=cds1303;Parent=gene1360;Dbxref=Genbank:WP_002209680.1;Name=WP_002209680.1;Note=involved in DNA repair and RecFOR pathway recombination%3B RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA;gbkey=CDS;gene=recO;product=DNA repair protein RecO;protein_id=WP_002209680.1;transl_table=11
NC_004088.1	RefSeq	gene	1443983	1444714	.	+	.	ID=gene1361;Name=Y_RS06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06830;old_locus_tag=y1300
NC_004088.1	Protein Homology	CDS	1443983	1444714	.	+	0	ID=cds1304;Parent=gene1361;Dbxref=Genbank:WP_002211569.1;Name=WP_002211569.1;Note=involved in the de novo synthesis of pyridoxine (Vitamin B6);gbkey=CDS;product=pyridoxine 5'-phosphate synthase;protein_id=WP_002211569.1;transl_table=11
NC_004088.1	RefSeq	gene	1444714	1445094	.	+	.	ID=gene1362;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=Y_RS06835;old_locus_tag=y1301
NC_004088.1	Protein Homology	CDS	1444714	1445094	.	+	0	ID=cds1305;Parent=gene1362;Dbxref=Genbank:WP_002211568.1;Name=WP_002211568.1;Note=Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids;gbkey=CDS;gene=acpS;product=holo-ACP synthase;protein_id=WP_002211568.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1445147	1445864	.	+	.	ID=id177;gbkey=repeat_region
NC_004088.1	RefSeq	region	1445151	1445860	.	+	.	ID=id178;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1445151	1445306	.	+	.	ID=gene1363;Name=Y_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06840
NC_004088.1	Protein Homology	CDS	1445151	1445306	.	+	0	ID=cds1306;Parent=gene1363;Dbxref=Genbank:WP_002213757.1;Name=WP_002213757.1;gbkey=CDS;product=invasin;protein_id=WP_002213757.1;transl_table=11
NC_004088.1	RefSeq	gene	1445296	1445754	.	+	.	ID=gene1364;Name=Y_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06845;old_locus_tag=y1302
NC_004088.1	Protein Homology	CDS	1445296	1445754	.	+	0	ID=cds1307;Parent=gene1364;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1445910	1446170	.	-	.	ID=gene1365;Name=Y_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06850;old_locus_tag=y1303
NC_004088.1	Protein Homology	CDS	1445910	1446170	.	-	0	ID=cds1308;Parent=gene1365;Dbxref=Genbank:WP_002211567.1;Name=WP_002211567.1;gbkey=CDS;product=ferredoxin;protein_id=WP_002211567.1;transl_table=11
NC_004088.1	RefSeq	gene	1446332	1447171	.	-	.	ID=gene1366;Name=Y_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06855;old_locus_tag=y1304
NC_004088.1	Protein Homology	CDS	1446332	1447171	.	-	0	ID=cds1309;Parent=gene1366;Dbxref=Genbank:WP_002211566.1;Name=WP_002211566.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002211566.1;transl_table=11
NC_004088.1	RefSeq	gene	1447379	1448266	.	+	.	ID=gene1367;Name=murQ;gbkey=Gene;gene=murQ;gene_biotype=protein_coding;gene_synonym=yfeU;locus_tag=Y_RS06860;old_locus_tag=y1305
NC_004088.1	Protein Homology	CDS	1447379	1448266	.	+	0	ID=cds1310;Parent=gene1367;Dbxref=Genbank:WP_002211565.1;Name=WP_002211565.1;Note=catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway;gbkey=CDS;gene=murQ;product=N-acetylmuramic acid 6-phosphate etherase;protein_id=WP_002211565.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	1448276	1448294	.	-	.	ID=id179;Dbxref=CollecTF:EXPSITE_00000cc0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y1306;gbkey=protein_bind
NC_004088.1	RefSeq	gene	1448493	1449188	.	+	.	ID=gene1368;Name=Y_RS06865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06865;old_locus_tag=y1306
NC_004088.1	Protein Homology	CDS	1448493	1449188	.	+	0	ID=cds1311;Parent=gene1368;Dbxref=Genbank:WP_002211564.1;Name=WP_002211564.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211564.1;transl_table=11
NC_004088.1	RefSeq	gene	1449259	1449861	.	+	.	ID=gene1369;Name=Y_RS06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06870;old_locus_tag=y1307
NC_004088.1	Protein Homology	CDS	1449259	1449861	.	+	0	ID=cds1312;Parent=gene1369;Dbxref=Genbank:WP_002211563.1;Name=WP_002211563.1;gbkey=CDS;product=adenosine deaminase;protein_id=WP_002211563.1;transl_table=11
NC_004088.1	RefSeq	gene	1449970	1451430	.	-	.	ID=gene1370;Name=Y_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06875;old_locus_tag=y1308
NC_004088.1	Protein Homology	CDS	1449970	1451430	.	-	0	ID=cds1313;Parent=gene1370;Dbxref=Genbank:WP_002211562.1;Name=WP_002211562.1;gbkey=CDS;product=murein transglycosylase;protein_id=WP_002211562.1;transl_table=11
NC_004088.1	RefSeq	gene	1451746	1455636	.	+	.	ID=gene1371;Name=Y_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06880;old_locus_tag=y1309
NC_004088.1	Protein Homology	CDS	1451746	1455636	.	+	0	ID=cds1314;Parent=gene1371;Dbxref=Genbank:WP_002223376.1;Name=WP_002223376.1;Note=catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis;gbkey=CDS;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_002223376.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1455667	1455841	.	+	.	ID=id180;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1456048	1456497	.	-	.	ID=gene1372;Name=Y_RS06885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06885
NC_004088.1	Protein Homology	CDS	1456048	1456497	.	-	0	ID=cds1315;Parent=gene1372;Dbxref=Genbank:WP_002211560.1;Name=WP_002211560.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211560.1;transl_table=11
NC_004088.1	RefSeq	gene	1456949	1457509	.	-	.	ID=gene1373;Name=Y_RS06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06890;old_locus_tag=y1311
NC_004088.1	Protein Homology	CDS	1456949	1457509	.	-	0	ID=cds1316;Parent=gene1373;Dbxref=Genbank:WP_002211559.1;Name=WP_002211559.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211559.1;transl_table=11
NC_004088.1	RefSeq	gene	1458528	1458746	.	+	.	ID=gene1374;Name=Y_RS06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06895
NC_004088.1	Protein Homology	CDS	1458528	1458746	.	+	0	ID=cds1317;Parent=gene1374;Dbxref=Genbank:WP_042468836.1;Name=WP_042468836.1;gbkey=CDS;product=transposase;protein_id=WP_042468836.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1458584	1459305	.	+	.	ID=id181;gbkey=repeat_region
NC_004088.1	RefSeq	region	1458591	1459300	.	+	.	ID=id182;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1458736	1459194	.	+	.	ID=gene1375;Name=Y_RS06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06900;old_locus_tag=y1312
NC_004088.1	Protein Homology	CDS	1458736	1459194	.	+	0	ID=cds1318;Parent=gene1375;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	1459415	1460851	.	+	.	ID=gene1376;Name=Y_RS06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06905;old_locus_tag=y1313
NC_004088.1	Protein Homology	CDS	1459415	1460851	.	+	0	ID=cds1319;Parent=gene1376;Dbxref=Genbank:WP_002216114.1;Name=WP_002216114.1;Note=part of the GlrKR two-component signal transduction system involved in the regulation of glmY;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_002216114.1;transl_table=11
NC_004088.1	RefSeq	gene	1460855	1461922	.	+	.	ID=gene1377;Name=Y_RS06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06910;old_locus_tag=y1314
NC_004088.1	Protein Homology	CDS	1460855	1461922	.	+	0	ID=cds1320;Parent=gene1377;Dbxref=Genbank:WP_002430124.1;Name=WP_002430124.1;gbkey=CDS;product=membrane protein;protein_id=WP_002430124.1;transl_table=11
NC_004088.1	RefSeq	gene	1461885	1463222	.	+	.	ID=gene1378;Name=Y_RS06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06915;old_locus_tag=y1315
NC_004088.1	Protein Homology	CDS	1461885	1463222	.	+	0	ID=cds1321;Parent=gene1378;Dbxref=Genbank:WP_002211556.1;Name=WP_002211556.1;Note=with GlrK is part of a two-component signal transduction system regulating glmY;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002211556.1;transl_table=11
NC_004088.1	RefSeq	gene	1463382	1465004	.	+	.	ID=gene1379;Name=Y_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06920;old_locus_tag=y1316
NC_004088.1	Protein Homology	CDS	1463382	1465004	.	+	0	ID=cds1322;Parent=gene1379;Dbxref=Genbank:WP_002211555.1;Name=WP_002211555.1;Note=NH(3)-dependent%3B catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers;gbkey=CDS;product=NAD synthetase;protein_id=WP_002211555.1;transl_table=11
NC_004088.1	RefSeq	gene	1465019	1465357	.	+	.	ID=gene1380;Name=Y_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06925;old_locus_tag=y1317
NC_004088.1	Protein Homology	CDS	1465019	1465357	.	+	0	ID=cds1323;Parent=gene1380;Dbxref=Genbank:WP_002211554.1;Name=WP_002211554.1;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA;gbkey=CDS;product=nitrogen regulatory protein P-II;protein_id=WP_002211554.1;transl_table=11
NC_004088.1	RefSeq	gene	1465526	1465897	.	-	.	ID=gene1381;Name=Y_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06930
NC_004088.1	Protein Homology	CDS	1465526	1465897	.	-	0	ID=cds1324;Parent=gene1381;Dbxref=Genbank:WP_002216118.1;Name=WP_002216118.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216118.1;transl_table=11
NC_004088.1	RefSeq	gene	1465863	1466303	.	-	.	ID=gene1382;Name=Y_RS06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06935
NC_004088.1	Protein Homology	CDS	1465863	1466303	.	-	0	ID=cds1325;Parent=gene1382;Dbxref=Genbank:WP_025470850.1;Name=WP_025470850.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_025470850.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1466271	1468228	.	+	.	ID=id183;gbkey=repeat_region
NC_004088.1	RefSeq	region	1466274	1468227	.	+	.	ID=id184;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1466360	1467382	.	+	.	ID=gene1383;Name=Y_RS06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06940;old_locus_tag=y1319
NC_004088.1	Protein Homology	CDS	1466360	1467382	.	+	0	ID=cds1326;Parent=gene1383;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	1467382	1468161	.	+	.	ID=gene1384;Name=Y_RS06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06945;old_locus_tag=y1320
NC_004088.1	Protein Homology	CDS	1467382	1468161	.	+	0	ID=cds1327;Parent=gene1384;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	1468849	1470039	.	-	.	ID=gene1385;Name=Y_RS06950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06950;old_locus_tag=y1321
NC_004088.1	Protein Homology	CDS	1468849	1470039	.	-	0	ID=cds1328;Parent=gene1385;Dbxref=Genbank:WP_002211553.1;Name=WP_002211553.1;Note=flavohemoprotein%3B catalyzes the formation of nitrate from nitric oxide%3B can also catalyze the reduction of dihydropteridine;gbkey=CDS;product=flavohemoprotein;protein_id=WP_002211553.1;transl_table=11
NC_004088.1	RefSeq	gene	1470580	1471833	.	+	.	ID=gene1386;Name=Y_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06955;old_locus_tag=y1322
NC_004088.1	Protein Homology	CDS	1470580	1471833	.	+	0	ID=cds1329;Parent=gene1386;Dbxref=Genbank:WP_002211552.1;Name=WP_002211552.1;gbkey=CDS;product=serine hydroxymethyltransferase;protein_id=WP_002211552.1;transl_table=11
NC_004088.1	RefSeq	gene	1471985	1472167	.	+	.	ID=gene1387;Name=Y_RS06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06960;old_locus_tag=y1323
NC_004088.1	Protein Homology	CDS	1471985	1472167	.	+	0	ID=cds1330;Parent=gene1387;Dbxref=Genbank:WP_002223388.1;Name=WP_002223388.1;gbkey=CDS;product=membrane protein;protein_id=WP_002223388.1;transl_table=11
NC_004088.1	RefSeq	gene	1472286	1472825	.	+	.	ID=gene1388;Name=Y_RS06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06965;old_locus_tag=y1324
NC_004088.1	Protein Homology	CDS	1472286	1472825	.	+	0	ID=cds1331;Parent=gene1388;Dbxref=Genbank:WP_002222198.1;Name=WP_002222198.1;gbkey=CDS;product=attachment protein;protein_id=WP_002222198.1;transl_table=11
NC_004088.1	RefSeq	gene	1473177	1474334	.	+	.	ID=gene1389;Name=Y_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06970;old_locus_tag=y1325
NC_004088.1	Protein Homology	CDS	1473177	1474334	.	+	0	ID=cds1332;Parent=gene1389;Dbxref=Genbank:WP_002213316.1;Name=WP_002213316.1;Note=transporter of 3-phenylpropionate across the inner membrane%3B member of the major facilitator superfamily of transporters;gbkey=CDS;product=3-phenylpropionic acid transporter;protein_id=WP_002213316.1;transl_table=11
NC_004088.1	RefSeq	gene	1474331	1475722	.	-	.	ID=gene1390;Name=Y_RS06975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06975;old_locus_tag=y1328
NC_004088.1	Protein Homology	CDS	1474331	1475722	.	-	0	ID=cds1333;Parent=gene1390;Dbxref=Genbank:WP_002232330.1;Name=WP_002232330.1;gbkey=CDS;product=PRD domain protein;protein_id=WP_002232330.1;transl_table=11
NC_004088.1	RefSeq	gene	1475864	1476538	.	+	.	ID=gene1391;Name=Y_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06980;old_locus_tag=y1329
NC_004088.1	Protein Homology	CDS	1475864	1476538	.	+	0	ID=cds1334;Parent=gene1391;Dbxref=Genbank:WP_002213310.1;Name=WP_002213310.1;gbkey=CDS;product=membrane protein;protein_id=WP_002213310.1;transl_table=11
NC_004088.1	RefSeq	gene	1476529	1477551	.	+	.	ID=gene1392;Name=Y_RS06985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06985;old_locus_tag=y1330
NC_004088.1	Protein Homology	CDS	1476529	1477551	.	+	0	ID=cds1335;Parent=gene1392;Dbxref=Genbank:WP_002213308.1;Name=WP_002213308.1;gbkey=CDS;product=nickel transporter;protein_id=WP_002213308.1;transl_table=11
NC_004088.1	RefSeq	gene	1477650	1478453	.	-	.	ID=gene1393;Name=Y_RS06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06990;old_locus_tag=y1331
NC_004088.1	Protein Homology	CDS	1477650	1478453	.	-	0	ID=cds1336;Parent=gene1393;Dbxref=Genbank:WP_002213305.1;Name=WP_002213305.1;gbkey=CDS;product=inositol monophosphatase;protein_id=WP_002213305.1;transl_table=11
NC_004088.1	RefSeq	gene	1478572	1479345	.	+	.	ID=gene1394;Name=Y_RS06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS06995;old_locus_tag=y1332
NC_004088.1	Protein Homology	CDS	1478572	1479345	.	+	0	ID=cds1337;Parent=gene1394;Dbxref=Genbank:WP_002217034.1;Name=WP_002217034.1;Note=catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA;gbkey=CDS;product=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;protein_id=WP_002217034.1;transl_table=11
NC_004088.1	RefSeq	gene	1479501	1479995	.	+	.	ID=gene1395;Name=Y_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07000;old_locus_tag=y1333
NC_004088.1	Protein Homology	CDS	1479501	1479995	.	+	0	ID=cds1338;Parent=gene1395;Dbxref=Genbank:WP_002222202.1;Name=WP_002222202.1;gbkey=CDS;product=Fe-S cluster assembly transcriptional regulator IscR;protein_id=WP_002222202.1;transl_table=11
NC_004088.1	RefSeq	gene	1480049	1481278	.	+	.	ID=gene1396;Name=Y_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07005;old_locus_tag=y1334
NC_004088.1	Protein Homology	CDS	1480049	1481278	.	+	0	ID=cds1339;Parent=gene1396;Dbxref=Genbank:WP_002209836.1;Name=WP_002209836.1;Note=catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis;gbkey=CDS;product=cysteine desulfurase;protein_id=WP_002209836.1;transl_table=11
NC_004088.1	RefSeq	gene	1481309	1481695	.	+	.	ID=gene1397;Name=Y_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07010;old_locus_tag=y1335
NC_004088.1	Protein Homology	CDS	1481309	1481695	.	+	0	ID=cds1340;Parent=gene1397;Dbxref=Genbank:WP_002209835.1;Name=WP_002209835.1;gbkey=CDS;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_002209835.1;transl_table=11
NC_004088.1	RefSeq	gene	1481965	1482288	.	+	.	ID=gene1398;Name=iscA;gbkey=Gene;gene=iscA;gene_biotype=protein_coding;locus_tag=Y_RS07015;old_locus_tag=y1336
NC_004088.1	Protein Homology	CDS	1481965	1482288	.	+	0	ID=cds1341;Parent=gene1398;Dbxref=Genbank:WP_002209834.1;Name=WP_002209834.1;Note=forms iron-sulfur clusters of ferredoxin [2FE-2S]%3B binds iron in the presence of the thioredoxin reductase system%3B forms homodimers and tetramers%3B similar to SufA protein;gbkey=CDS;gene=iscA;product=iron-binding protein;protein_id=WP_002209834.1;transl_table=11
NC_004088.1	RefSeq	gene	1482399	1482923	.	+	.	ID=gene1399;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=Y_RS07020;old_locus_tag=y1338
NC_004088.1	Protein Homology	CDS	1482399	1482923	.	+	0	ID=cds1342;Parent=gene1399;Dbxref=Genbank:WP_002209833.1;Name=WP_002209833.1;Note=J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone%3B may function in biogenesis of iron-sulfur proteins;gbkey=CDS;gene=hscB;product=co-chaperone protein HscB;protein_id=WP_002209833.1;transl_table=11
NC_004088.1	RefSeq	gene	1483166	1485100	.	+	.	ID=gene1400;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=Y_RS07025;old_locus_tag=y1339
NC_004088.1	Protein Homology	CDS	1483166	1485100	.	+	0	ID=cds1343;Parent=gene1400;Dbxref=Genbank:WP_002223398.1;Name=WP_002223398.1;Note=involved in the maturation of iron-sulfur cluster-containing proteins;gbkey=CDS;gene=hscA;product=chaperone protein HscA;protein_id=WP_002223398.1;transl_table=11
NC_004088.1	RefSeq	gene	1485103	1485438	.	+	.	ID=gene1401;Name=Y_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07030;old_locus_tag=y1340
NC_004088.1	Protein Homology	CDS	1485103	1485438	.	+	0	ID=cds1344;Parent=gene1401;Dbxref=Genbank:WP_002209831.1;Name=WP_002209831.1;gbkey=CDS;product=(2Fe-2S) ferredoxin;protein_id=WP_002209831.1;transl_table=11
NC_004088.1	RefSeq	gene	1485468	1485668	.	+	.	ID=gene1402;Name=Y_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07035;old_locus_tag=y1341
NC_004088.1	Protein Homology	CDS	1485468	1485668	.	+	0	ID=cds1345;Parent=gene1402;Dbxref=Genbank:WP_002209830.1;Name=WP_002209830.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209830.1;transl_table=11
NC_004088.1	RefSeq	gene	1485808	1487106	.	+	.	ID=gene1403;Name=Y_RS07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07040;old_locus_tag=y1342
NC_004088.1	Protein Homology	CDS	1485808	1487106	.	+	0	ID=cds1346;Parent=gene1403;Dbxref=Genbank:WP_002209829.1;Name=WP_002209829.1;Note=catalyzes the removal of an N-terminal amino acid from a peptide or arylamide;gbkey=CDS;product=peptidase B;protein_id=WP_002209829.1;transl_table=11
NC_004088.1	RefSeq	gene	1487185	1488138	.	+	.	ID=gene1404;Name=Y_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07045;old_locus_tag=y1343
NC_004088.1	Protein Homology	CDS	1487185	1488138	.	+	0	ID=cds1347;Parent=gene1404;Dbxref=Genbank:WP_002209828.1;Name=WP_002209828.1;gbkey=CDS;product=endopeptidase IV;protein_id=WP_002209828.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1488174	1488344	.	+	.	ID=id185;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1488476	1488796	.	-	.	ID=gene1405;Name=Y_RS07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07050;old_locus_tag=y1344
NC_004088.1	Protein Homology	CDS	1488476	1488796	.	-	0	ID=cds1348;Parent=gene1405;Dbxref=Genbank:WP_002215505.1;Name=WP_002215505.1;gbkey=CDS;product=autotransporter;protein_id=WP_002215505.1;transl_table=11
NC_004088.1	RefSeq	gene	1488762	1491758	.	-	.	ID=gene1406;Name=Y_RS07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07055;old_locus_tag=y1345
NC_004088.1	Protein Homology	CDS	1488762	1491758	.	-	0	ID=cds1349;Parent=gene1406;Dbxref=Genbank:WP_002228388.1;Name=WP_002228388.1;gbkey=CDS;product=pertactin;protein_id=WP_002228388.1;transl_table=11
NC_004088.1	RefSeq	gene	1492316	1496461	.	-	.	ID=gene1407;Name=Y_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07060;old_locus_tag=y1346
NC_004088.1	Protein Homology	CDS	1492316	1496461	.	-	0	ID=cds1350;Parent=gene1407;Dbxref=Genbank:WP_002215510.1;Name=WP_002215510.1;gbkey=CDS;product=autotransporter;protein_id=WP_002215510.1;transl_table=11
NC_004088.1	RefSeq	gene	1496976	1497233	.	-	.	ID=gene1408;Name=Y_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07065;old_locus_tag=y1347
NC_004088.1	Protein Homology	CDS	1496976	1497233	.	-	0	ID=cds1351;Parent=gene1408;Dbxref=Genbank:WP_002215513.1;Name=WP_002215513.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215513.1;transl_table=11
NC_004088.1	RefSeq	gene	1497408	1499828	.	+	.	ID=gene1409;Name=Y_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07070;old_locus_tag=y1348
NC_004088.1	Protein Homology	CDS	1497408	1499828	.	+	0	ID=cds1352;Parent=gene1409;Dbxref=Genbank:WP_002215515.1;Name=WP_002215515.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215515.1;transl_table=11
NC_004088.1	RefSeq	gene	1500155	1500583	.	+	.	ID=gene1410;Name=Y_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07075;old_locus_tag=y1349
NC_004088.1	Protein Homology	CDS	1500155	1500583	.	+	0	ID=cds1353;Parent=gene1410;Dbxref=Genbank:WP_002209821.1;Name=WP_002209821.1;Note=catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate;gbkey=CDS;product=nucleoside diphosphate kinase;protein_id=WP_002209821.1;transl_table=11
NC_004088.1	RefSeq	gene	1500845	1502041	.	+	.	ID=gene1411;Name=Y_RS07080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07080;old_locus_tag=y1350
NC_004088.1	Protein Homology	CDS	1500845	1502041	.	+	0	ID=cds1354;Parent=gene1411;Dbxref=Genbank:WP_002209820.1;Name=WP_002209820.1;Note=23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance;gbkey=CDS;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=WP_002209820.1;transl_table=11
NC_004088.1	RefSeq	gene	1502195	1502944	.	+	.	ID=gene1412;Name=Y_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07085;old_locus_tag=y1351
NC_004088.1	Protein Homology	CDS	1502195	1502944	.	+	0	ID=cds1355;Parent=gene1412;Dbxref=Genbank:WP_002209819.1;Name=WP_002209819.1;gbkey=CDS;product=pilus assembly protein PilW;protein_id=WP_002209819.1;transl_table=11
NC_004088.1	RefSeq	gene	1502934	1503971	.	+	.	ID=gene1413;Name=Y_RS07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07090;old_locus_tag=y1352
NC_004088.1	Protein Homology	CDS	1502934	1503971	.	+	0	ID=cds1356;Parent=gene1413;Dbxref=Genbank:WP_002209818.1;Name=WP_002209818.1;gbkey=CDS;product=cytoskeleton protein RodZ;protein_id=WP_002209818.1;transl_table=11
NC_004088.1	RefSeq	gene	1504033	1505160	.	+	.	ID=gene1414;Name=Y_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07095;old_locus_tag=y1353
NC_004088.1	Protein Homology	CDS	1504033	1505160	.	+	0	ID=cds1357;Parent=gene1414;Dbxref=Genbank:WP_002209817.1;Name=WP_002209817.1;gbkey=CDS;product=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin);protein_id=WP_002209817.1;transl_table=11
NC_004088.1	RefSeq	gene	1505369	1506643	.	+	.	ID=gene1415;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=Y_RS07100;old_locus_tag=y1354
NC_004088.1	Protein Homology	CDS	1505369	1506643	.	+	0	ID=cds1358;Parent=gene1415;Dbxref=Genbank:WP_011055385.1;Name=WP_011055385.1;Note=catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG;gbkey=CDS;gene=hisS;product=histidyl-tRNA synthetase;protein_id=WP_011055385.1;transl_table=11
NC_004088.1	RefSeq	gene	1506657	1507292	.	+	.	ID=gene1416;Name=Y_RS07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07105;old_locus_tag=y1355
NC_004088.1	Protein Homology	CDS	1506657	1507292	.	+	0	ID=cds1359;Parent=gene1416;Dbxref=Genbank:WP_002209815.1;Name=WP_002209815.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209815.1;transl_table=11
NC_004088.1	RefSeq	gene	1507304	1508485	.	+	.	ID=gene1417;Name=Y_RS07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07110;old_locus_tag=y1356
NC_004088.1	Protein Homology	CDS	1507304	1508485	.	+	0	ID=cds1360;Parent=gene1417;Dbxref=Genbank:WP_002209814.1;Name=WP_002209814.1;gbkey=CDS;product=outer membrane protein assembly factor BamB;protein_id=WP_002209814.1;transl_table=11
NC_004088.1	RefSeq	gene	1508633	1510120	.	+	.	ID=gene1418;Name=Y_RS07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07115;old_locus_tag=y1357
NC_004088.1	Protein Homology	CDS	1508633	1510120	.	+	0	ID=cds1361;Parent=gene1418;Dbxref=Genbank:WP_002209813.1;Name=WP_002209813.1;gbkey=CDS;product=GTPase Der;protein_id=WP_002209813.1;transl_table=11
NC_004088.1	RefSeq	gene	1510467	1511423	.	+	.	ID=gene1419;Name=Y_RS07120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07120;old_locus_tag=y1358
NC_004088.1	Protein Homology	CDS	1510467	1511423	.	+	0	ID=cds1362;Parent=gene1419;Dbxref=Genbank:WP_002209812.1;Name=WP_002209812.1;gbkey=CDS;product=transporter;protein_id=WP_002209812.1;transl_table=11
NC_004088.1	RefSeq	gene	1511472	1511696	.	+	.	ID=gene1420;Name=Y_RS07125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07125;old_locus_tag=y1359
NC_004088.1	Protein Homology	CDS	1511472	1511696	.	+	0	ID=cds1363;Parent=gene1420;Dbxref=Genbank:WP_002209811.1;Name=WP_002209811.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209811.1;transl_table=11
NC_004088.1	RefSeq	gene	1511797	1513176	.	-	.	ID=gene1421;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=Y_RS07130;old_locus_tag=y1361
NC_004088.1	Protein Homology	CDS	1511797	1513176	.	-	0	ID=cds1364;Parent=gene1421;Dbxref=Genbank:WP_002209810.1;Name=WP_002209810.1;Note=bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides;gbkey=CDS;gene=xseA;product=exodeoxyribonuclease 7 large subunit;protein_id=WP_002209810.1;transl_table=11
NC_004088.1	RefSeq	gene	1513346	1514809	.	+	.	ID=gene1422;Name=Y_RS07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07135;old_locus_tag=y1362
NC_004088.1	Protein Homology	CDS	1513346	1514809	.	+	0	ID=cds1365;Parent=gene1422;Dbxref=Genbank:WP_002227862.1;Name=WP_002227862.1;gbkey=CDS;product=inosine-5-monophosphate dehydrogenase;protein_id=WP_002227862.1;transl_table=11
NC_004088.1	RefSeq	gene	1514881	1515006	.	-	.	ID=gene1423;Name=Y_RS07140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07140
NC_004088.1	Protein Homology	CDS	1514881	1515006	.	-	0	ID=cds1366;Parent=gene1423;Dbxref=Genbank:WP_002209808.1;Name=WP_002209808.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209808.1;transl_table=11
NC_004088.1	RefSeq	gene	1514989	1516566	.	+	.	ID=gene1424;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=Y_RS07145;old_locus_tag=y1363
NC_004088.1	Protein Homology	CDS	1514989	1516566	.	+	0	ID=cds1367;Parent=gene1424;Dbxref=Genbank:WP_002209807.1;Name=WP_002209807.1;Note=contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway;gbkey=CDS;gene=guaA;product=GMP synthase [glutamine-hydrolyzing];protein_id=WP_002209807.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1516635	1516767	.	+	.	ID=id186;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1516778	1516951	.	+	.	ID=gene1425;Name=Y_RS07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07150
NC_004088.1	Protein Homology	CDS	1516778	1516951	.	+	0	ID=cds1368;Parent=gene1425;Dbxref=Genbank:WP_025470750.1;Name=WP_025470750.1;gbkey=CDS;product=transposase;protein_id=WP_025470750.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1516785	1517510	.	+	.	ID=id187;gbkey=repeat_region
NC_004088.1	RefSeq	region	1516796	1517505	.	+	.	ID=id188;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1516941	1517399	.	+	.	ID=gene1426;Name=Y_RS07155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07155;old_locus_tag=y1364
NC_004088.1	Protein Homology	CDS	1516941	1517399	.	+	0	ID=cds1369;Parent=gene1426;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1517559	1518038	.	-	.	ID=gene1427;Name=Y_RS07160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07160;old_locus_tag=y1365
NC_004088.1	Protein Homology	CDS	1517559	1518038	.	-	0	ID=cds1370;Parent=gene1427;Dbxref=Genbank:WP_002209806.1;Name=WP_002209806.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209806.1;transl_table=11
NC_004088.1	RefSeq	gene	1518062	1518460	.	-	.	ID=gene1428;Name=Y_RS07165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07165;old_locus_tag=y1366
NC_004088.1	Protein Homology	CDS	1518062	1518460	.	-	0	ID=cds1371;Parent=gene1428;Dbxref=Genbank:WP_002216975.1;Name=WP_002216975.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216975.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1518480	1518625	.	+	.	ID=id189;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1518524	1518919	.	-	.	ID=gene1429;Name=Y_RS07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07170;old_locus_tag=y1367
NC_004088.1	Protein Homology	CDS	1518524	1518919	.	-	0	ID=cds1372;Parent=gene1429;Dbxref=Genbank:WP_002415472.1;Name=WP_002415472.1;gbkey=CDS;product=membrane protein;protein_id=WP_002415472.1;transl_table=11
NC_004088.1	RefSeq	gene	1518981	1519376	.	-	.	ID=gene1430;Name=Y_RS07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07175;old_locus_tag=y1368
NC_004088.1	Protein Homology	CDS	1518981	1519376	.	-	0	ID=cds1373;Parent=gene1430;Dbxref=Genbank:WP_002216979.1;Name=WP_002216979.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216979.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1519396	1519541	.	+	.	ID=id190;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1519440	1519835	.	-	.	ID=gene1431;Name=Y_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07180;old_locus_tag=y1369
NC_004088.1	Protein Homology	CDS	1519440	1519835	.	-	0	ID=cds1374;Parent=gene1431;Dbxref=Genbank:WP_002216980.1;Name=WP_002216980.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216980.1;transl_table=11
NC_004088.1	RefSeq	gene	1519832	1520467	.	-	.	ID=gene1432;Name=Y_RS07185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07185;old_locus_tag=y1370
NC_004088.1	Protein Homology	CDS	1519832	1520467	.	-	0	ID=cds1375;Parent=gene1432;Dbxref=Genbank:WP_002209805.1;Name=WP_002209805.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209805.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1520484	1521803	.	+	.	ID=id191;gbkey=repeat_region
NC_004088.1	RefSeq	region	1520487	1521801	.	+	.	ID=id192;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1520558	1521766	.	+	.	ID=gene1433;Name=Y_RS07190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07190;old_locus_tag=y1371
NC_004088.1	Protein Homology	CDS	1520558	1521766	.	+	0	ID=cds1376;Parent=gene1433;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	1521778	1522056	.	-	.	ID=gene1434;Name=Y_RS07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07195
NC_004088.1	Protein Homology	CDS	1521778	1522056	.	-	0	ID=cds1377;Parent=gene1434;Dbxref=Genbank:WP_002209804.1;Name=WP_002209804.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209804.1;transl_table=11
NC_004088.1	RefSeq	gene	1522115	1522582	.	-	.	ID=gene1435;Name=Y_RS07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07200;old_locus_tag=y1372
NC_004088.1	Protein Homology	CDS	1522115	1522582	.	-	0	ID=cds1378;Parent=gene1435;Dbxref=Genbank:WP_002209803.1;Name=WP_002209803.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209803.1;transl_table=11
NC_004088.1	RefSeq	gene	1523104	1523904	.	+	.	ID=gene1436;Name=Y_RS07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07205;old_locus_tag=y1373
NC_004088.1	Protein Homology	CDS	1523104	1523904	.	+	0	ID=cds1379;Parent=gene1436;Dbxref=Genbank:WP_002209801.1;Name=WP_002209801.1;Note=catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate;gbkey=CDS;product=bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase;protein_id=WP_002209801.1;transl_table=11
NC_004088.1	RefSeq	gene	1523966	1524712	.	-	.	ID=gene1437;Name=Y_RS07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07210;old_locus_tag=y1374
NC_004088.1	Protein Homology	CDS	1523966	1524712	.	-	0	ID=cds1380;Parent=gene1437;Dbxref=Genbank:WP_002232352.1;Name=WP_002232352.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002232352.1;transl_table=11
NC_004088.1	RefSeq	gene	1525085	1525594	.	+	.	ID=gene1438;Name=Y_RS07215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07215;old_locus_tag=y1376
NC_004088.1	Protein Homology	CDS	1525085	1525594	.	+	0	ID=cds1381;Parent=gene1438;Dbxref=Genbank:WP_002209800.1;Name=WP_002209800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209800.1;transl_table=11
NC_004088.1	RefSeq	gene	1525881	1526771	.	-	.	ID=gene1439;Name=Y_RS07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07220;old_locus_tag=y1378
NC_004088.1	Protein Homology	CDS	1525881	1526771	.	-	0	ID=cds1382;Parent=gene1439;Dbxref=Genbank:WP_002209799.1;Name=WP_002209799.1;Note=cytosolic protein with phosphatidylglycerol kinase activity%3B undetermined physiological role;gbkey=CDS;product=lipid kinase;protein_id=WP_002209799.1;transl_table=11
NC_004088.1	RefSeq	gene	1527407	1528801	.	-	.	ID=gene1440;Name=Y_RS07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07225;old_locus_tag=y1379
NC_004088.1	Protein Homology	CDS	1527407	1528801	.	-	0	ID=cds1383;Parent=gene1440;Dbxref=Genbank:WP_002209798.1;Name=WP_002209798.1;gbkey=CDS;product=protease;protein_id=WP_002209798.1;transl_table=11
NC_004088.1	RefSeq	gene	1529076	1529414	.	-	.	ID=gene1441;Name=Y_RS07230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07230;old_locus_tag=y1380
NC_004088.1	Protein Homology	CDS	1529076	1529414	.	-	0	ID=cds1384;Parent=gene1441;Dbxref=Genbank:WP_002209797.1;Name=WP_002209797.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209797.1;transl_table=11
NC_004088.1	RefSeq	gene	1529551	1530270	.	-	.	ID=gene1442;Name=Y_RS07235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07235;old_locus_tag=y1381
NC_004088.1	Protein Homology	CDS	1529551	1530270	.	-	0	ID=cds1385;Parent=gene1442;Dbxref=Genbank:WP_002209796.1;Name=WP_002209796.1;Note=response regulator in two-component regulatory system with BaeS%3B regulator of RNA synthesis%2C flagellar biosynthesis%2C chemotaxis and transport;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002209796.1;transl_table=11
NC_004088.1	RefSeq	gene	1530280	1530537	.	-	.	ID=gene1443;Name=Y_RS07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07240
NC_004088.1	Protein Homology	CDS	1530280	1530537	.	-	0	ID=cds1386;Parent=gene1443;Dbxref=Genbank:WP_002228394.1;Name=WP_002228394.1;gbkey=CDS;product=ATPase;protein_id=WP_002228394.1;transl_table=11
NC_004088.1	RefSeq	gene	1530549	1531664	.	-	.	ID=gene1444;Name=Y_RS07245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07245
NC_004088.1	Protein Homology	CDS	1530549	1531664	.	-	0	ID=cds1387;Parent=gene1444;Dbxref=Genbank:WP_002228395.1;Name=WP_002228395.1;gbkey=CDS;product=signal transduction histidine kinase;protein_id=WP_002228395.1;transl_table=11
NC_004088.1	RefSeq	gene	1531695	1533092	.	-	.	ID=gene1445;Name=Y_RS07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07250;old_locus_tag=y1383
NC_004088.1	Protein Homology	CDS	1531695	1533092	.	-	0	ID=cds1388;Parent=gene1445;Dbxref=Genbank:WP_002209795.1;Name=WP_002209795.1;gbkey=CDS;product=transporter;protein_id=WP_002209795.1;transl_table=11
NC_004088.1	RefSeq	gene	1533126	1536200	.	-	.	ID=gene1446;Name=Y_RS07255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07255;old_locus_tag=y1384
NC_004088.1	Protein Homology	CDS	1533126	1536200	.	-	0	ID=cds1389;Parent=gene1446;Dbxref=Genbank:WP_002209794.1;Name=WP_002209794.1;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=multidrug resistance protein MdtC;protein_id=WP_002209794.1;transl_table=11
NC_004088.1	RefSeq	gene	1536197	1539355	.	-	.	ID=gene1447;Name=Y_RS07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07260;old_locus_tag=y1385
NC_004088.1	Protein Homology	CDS	1536197	1539355	.	-	0	ID=cds1390;Parent=gene1447;Dbxref=Genbank:WP_002209793.1;Name=WP_002209793.1;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=multidrug resistance protein MdtB;protein_id=WP_002209793.1;transl_table=11
NC_004088.1	RefSeq	gene	1539355	1540689	.	-	.	ID=gene1448;Name=Y_RS07265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07265;old_locus_tag=y1386
NC_004088.1	Protein Homology	CDS	1539355	1540689	.	-	0	ID=cds1391;Parent=gene1448;Dbxref=Genbank:WP_002214676.1;Name=WP_002214676.1;gbkey=CDS;product=multidrug resistance protein MdtA;protein_id=WP_002214676.1;transl_table=11
NC_004088.1	RefSeq	gene	1541053	1542138	.	-	.	ID=gene1449;Name=Y_RS07270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07270;old_locus_tag=y1388
NC_004088.1	Protein Homology	CDS	1541053	1542138	.	-	0	ID=cds1392;Parent=gene1449;Dbxref=Genbank:WP_002209791.1;Name=WP_002209791.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002209791.1;transl_table=11
NC_004088.1	RefSeq	gene	1542521	1544026	.	-	.	ID=gene1450;Name=Y_RS07275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07275;old_locus_tag=y1389
NC_004088.1	Protein Homology	CDS	1542521	1544026	.	-	0	ID=cds1393;Parent=gene1450;Dbxref=Genbank:WP_002209790.1;Name=WP_002209790.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_002209790.1;transl_table=11
NC_004088.1	RefSeq	gene	1544207	1545496	.	+	.	ID=gene1451;Name=Y_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07280;old_locus_tag=y1390
NC_004088.1	Protein Homology	CDS	1544207	1545496	.	+	0	ID=cds1394;Parent=gene1451;Dbxref=Genbank:WP_002209789.1;Name=WP_002209789.1;Note=catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate;gbkey=CDS;product=4-aminobutyrate aminotransferase;protein_id=WP_002209789.1;transl_table=11
NC_004088.1	RefSeq	gene	1545549	1546577	.	+	.	ID=gene1452;Name=Y_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07285;old_locus_tag=y1391
NC_004088.1	Protein Homology	CDS	1545549	1546577	.	+	0	ID=cds1395;Parent=gene1452;Dbxref=Genbank:WP_002209788.1;Name=WP_002209788.1;gbkey=CDS;product=polyamine ABC transporter permease;protein_id=WP_002209788.1;transl_table=11
NC_004088.1	RefSeq	gene	1546624	1547889	.	+	.	ID=gene1453;Name=Y_RS07290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07290;old_locus_tag=y1392
NC_004088.1	Protein Homology	CDS	1546624	1547889	.	+	0	ID=cds1396;Parent=gene1453;Dbxref=Genbank:WP_002209787.1;Name=WP_002209787.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002209787.1;transl_table=11
NC_004088.1	RefSeq	gene	1547951	1548799	.	+	.	ID=gene1454;Name=Y_RS07295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07295;old_locus_tag=y1393
NC_004088.1	Protein Homology	CDS	1547951	1548799	.	+	0	ID=cds1397;Parent=gene1454;Dbxref=Genbank:WP_002209786.1;Name=WP_002209786.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002209786.1;transl_table=11
NC_004088.1	RefSeq	gene	1549071	1550423	.	-	.	ID=gene1455;Name=Y_RS07300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07300;old_locus_tag=y1394
NC_004088.1	Protein Homology	CDS	1549071	1550423	.	-	0	ID=cds1398;Parent=gene1455;Dbxref=Genbank:WP_002209785.1;Name=WP_002209785.1;gbkey=CDS;product=chaperone;protein_id=WP_002209785.1;transl_table=11
NC_004088.1	RefSeq	gene	1550563	1552038	.	-	.	ID=gene1456;Name=Y_RS07305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07305;old_locus_tag=y1395
NC_004088.1	Protein Homology	CDS	1550563	1552038	.	-	0	ID=cds1399;Parent=gene1456;Dbxref=Genbank:WP_002209784.1;Name=WP_002209784.1;gbkey=CDS;product=dihydroorotate dehydrogenase;protein_id=WP_002209784.1;transl_table=11
NC_004088.1	RefSeq	gene	1552090	1552278	.	-	.	ID=gene1457;Name=Y_RS07310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07310;old_locus_tag=y1396
NC_004088.1	Protein Homology	CDS	1552090	1552278	.	-	0	ID=cds1400;Parent=gene1457;Dbxref=Genbank:WP_012303868.1;Name=WP_012303868.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012303868.1;transl_table=11
NC_004088.1	RefSeq	gene	1552414	1553973	.	-	.	ID=gene1458;Name=Y_RS07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07315;old_locus_tag=y1397
NC_004088.1	Protein Homology	CDS	1552414	1553973	.	-	0	ID=cds1401;Parent=gene1458;Dbxref=Genbank:WP_002209783.1;Name=WP_002209783.1;gbkey=CDS;product=exopolyphosphatase;protein_id=WP_002209783.1;transl_table=11
NC_004088.1	RefSeq	gene	1553984	1556047	.	-	.	ID=gene1459;Name=Y_RS07320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07320;old_locus_tag=y1398
NC_004088.1	Protein Homology	CDS	1553984	1556047	.	-	0	ID=cds1402;Parent=gene1459;Dbxref=Genbank:WP_002209782.1;Name=WP_002209782.1;gbkey=CDS;product=polyphosphate kinase;protein_id=WP_002209782.1;transl_table=11
NC_004088.1	RefSeq	gene	1556318	1558549	.	+	.	ID=gene1460;Name=Y_RS07325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07325;old_locus_tag=y1399
NC_004088.1	Protein Homology	CDS	1556318	1558549	.	+	0	ID=cds1403;Parent=gene1460;Dbxref=Genbank:WP_002214670.1;Name=WP_002214670.1;gbkey=CDS;product=phosphate ABC transporter permease;protein_id=WP_002214670.1;transl_table=11
NC_004088.1	RefSeq	gene	1558609	1560261	.	+	.	ID=gene1461;Name=Y_RS07330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07330;old_locus_tag=y1400
NC_004088.1	Protein Homology	CDS	1558609	1560261	.	+	0	ID=cds1404;Parent=gene1461;Dbxref=Genbank:WP_032465662.1;Name=WP_032465662.1;gbkey=CDS;product=phosphate ABC transporter permease;protein_id=WP_032465662.1;transl_table=11
NC_004088.1	RefSeq	gene	1560289	1561101	.	+	.	ID=gene1462;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=Y_RS07335;old_locus_tag=y1401
NC_004088.1	Protein Homology	CDS	1560289	1561101	.	+	0	ID=cds1405;Parent=gene1462;Dbxref=Genbank:WP_002209780.1;Name=WP_002209780.1;Note=ATP-binding protein%3B PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation;gbkey=CDS;gene=pstB;product=phosphate import ATP-binding protein PstB 1;protein_id=WP_002209780.1;transl_table=11
NC_004088.1	RefSeq	gene	1561329	1561709	.	+	.	ID=gene1463;Name=Y_RS07340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07340;old_locus_tag=y1402
NC_004088.1	Protein Homology	CDS	1561329	1561709	.	+	0	ID=cds1406;Parent=gene1463;Dbxref=Genbank:WP_002214664.1;Name=WP_002214664.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214664.1;transl_table=11
NC_004088.1	RefSeq	gene	1561796	1562518	.	+	.	ID=gene1464;Name=Y_RS07345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07345;old_locus_tag=y1403
NC_004088.1	Protein Homology	CDS	1561796	1562518	.	+	0	ID=cds1407;Parent=gene1464;Dbxref=Genbank:WP_002214662.1;Name=WP_002214662.1;gbkey=CDS;product=N-methylation of lysine residues in flagellin;protein_id=WP_002214662.1;transl_table=11
NC_004088.1	RefSeq	gene	1562612	1563157	.	-	.	ID=gene1465;Name=Y_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07350;old_locus_tag=y1405
NC_004088.1	Protein Homology	CDS	1562612	1563157	.	-	0	ID=cds1408;Parent=gene1465;Dbxref=Genbank:WP_002209779.1;Name=WP_002209779.1;Note=catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine;gbkey=CDS;product=spermidine N1-acetyltransferase;protein_id=WP_002209779.1;transl_table=11
NC_004088.1	RefSeq	gene	1563386	1564024	.	-	.	ID=gene1466;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=Y_RS07355;old_locus_tag=y1406
NC_004088.1	Protein Homology	CDS	1563386	1564024	.	-	0	ID=cds1409;Parent=gene1466;Dbxref=Genbank:WP_002209778.1;Name=WP_002209778.1;Note=glycinamide ribonucleotide transformylase%3B GAR Tfase%3B catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate%3B PurN requires formyl folate for the reaction unlike PurT which uses formate;gbkey=CDS;gene=purN;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_002209778.1;transl_table=11
NC_004088.1	RefSeq	gene	1564139	1565182	.	-	.	ID=gene1467;Name=Y_RS07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07360;old_locus_tag=y1407
NC_004088.1	Protein Homology	CDS	1564139	1565182	.	-	0	ID=cds1410;Parent=gene1467;Dbxref=Genbank:WP_002209777.1;Name=WP_002209777.1;Note=catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis;gbkey=CDS;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_002209777.1;transl_table=11
NC_004088.1	RefSeq	gene	1565579	1566205	.	+	.	ID=gene1468;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=Y_RS07365;old_locus_tag=y1408
NC_004088.1	Protein Homology	CDS	1565579	1566205	.	+	0	ID=cds1411;Parent=gene1468;Dbxref=Genbank:WP_002209776.1;Name=WP_002209776.1;Note=Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate;gbkey=CDS;gene=upp;product=uracil phosphoribosyltransferase;protein_id=WP_002209776.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1566229	1566948	.	+	.	ID=id193;gbkey=repeat_region
NC_004088.1	RefSeq	region	1566236	1566945	.	+	.	ID=id194;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1566381	1566839	.	+	.	ID=gene1469;Name=Y_RS07370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07370;old_locus_tag=y1409
NC_004088.1	Protein Homology	CDS	1566381	1566839	.	+	0	ID=cds1412;Parent=gene1469;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1567027	1567734	.	+	.	ID=gene1470;Name=Y_RS07375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07375;old_locus_tag=y1410
NC_004088.1	Protein Homology	CDS	1567027	1567734	.	+	0	ID=cds1413;Parent=gene1470;Dbxref=Genbank:WP_002228401.1;Name=WP_002228401.1;Note=controls initiation of DNA replication by inhibiting re-initiation of replication%2C promotes hydrolysis of DnaA-bound ATP;gbkey=CDS;product=DnaA regulatory inactivator Hda;protein_id=WP_002228401.1;transl_table=11
NC_004088.1	RefSeq	gene	1567946	1568302	.	-	.	ID=gene1471;Name=Y_RS07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07380
NC_004088.1	Protein Homology	CDS	1567946	1568302	.	-	0	ID=cds1414;Parent=gene1471;Dbxref=Genbank:WP_002208565.1;Name=WP_002208565.1;gbkey=CDS;product=arsenate reductase;protein_id=WP_002208565.1;transl_table=11
NC_004088.1	RefSeq	gene	1568409	1569893	.	-	.	ID=gene1472;Name=Y_RS07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07385;old_locus_tag=y1412
NC_004088.1	Protein Homology	CDS	1568409	1569893	.	-	0	ID=cds1415;Parent=gene1472;Dbxref=Genbank:WP_002217569.1;Name=WP_002217569.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217569.1;transl_table=11
NC_004088.1	RefSeq	gene	1570224	1571288	.	+	.	ID=gene1473;Name=Y_RS07390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07390;old_locus_tag=y1413
NC_004088.1	Protein Homology	CDS	1570224	1571288	.	+	0	ID=cds1416;Parent=gene1473;Dbxref=Genbank:WP_002208563.1;Name=WP_002208563.1;gbkey=CDS;product=permease;protein_id=WP_002208563.1;transl_table=11
NC_004088.1	RefSeq	gene	1571377	1571550	.	-	.	ID=gene1474;Name=Y_RS07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07395
NC_004088.1	Protein Homology	CDS	1571377	1571550	.	-	0	ID=cds1417;Parent=gene1474;Dbxref=Genbank:WP_002217567.1;Name=WP_002217567.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217567.1;transl_table=11
NC_004088.1	RefSeq	gene	1571888	1572583	.	+	.	ID=gene1475;Name=Y_RS07400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07400;old_locus_tag=y1415
NC_004088.1	Protein Homology	CDS	1571888	1572583	.	+	0	ID=cds1418;Parent=gene1475;Dbxref=Genbank:WP_002208561.1;Name=WP_002208561.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208561.1;transl_table=11
NC_004088.1	RefSeq	gene	1572587	1573006	.	+	.	ID=gene1476;Name=Y_RS07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07405;old_locus_tag=y1416
NC_004088.1	Protein Homology	CDS	1572587	1573006	.	+	0	ID=cds1419;Parent=gene1476;Dbxref=Genbank:WP_002217563.1;Name=WP_002217563.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217563.1;transl_table=11
NC_004088.1	RefSeq	gene	1573250	1573720	.	-	.	ID=gene1477;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=Y_RS07410;old_locus_tag=y1417
NC_004088.1	Protein Homology	CDS	1573250	1573720	.	-	0	ID=cds1420;Parent=gene1477;Dbxref=Genbank:WP_002224836.1;Name=WP_002224836.1;Note=bacterioferritin comigratory protein%3B thiol peroxidase%3B thioredoxin-dependent%3B hydroperoxide peroxidase%3B in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide%3B contains an active site cysteine;gbkey=CDS;gene=bcp;product=thiol peroxidase;protein_id=WP_002224836.1;transl_table=11
NC_004088.1	RefSeq	gene	1573723	1574292	.	-	.	ID=gene1478;Name=gcvR;gbkey=Gene;gene=gcvR;gene_biotype=protein_coding;locus_tag=Y_RS07415
NC_004088.1	Protein Homology	CDS	1573723	1574292	.	-	0	ID=cds1421;Parent=gene1478;Dbxref=Genbank:WP_002227068.1;Name=WP_002227068.1;Note=negative transcriptional regulator of the gcvTHP operon;gbkey=CDS;gene=gcvR;product=glycine cleavage system transcriptional regulator;protein_id=WP_002227068.1;transl_table=11
NC_004088.1	RefSeq	gene	1574457	1575338	.	+	.	ID=gene1479;Name=Y_RS07420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07420;old_locus_tag=y1418
NC_004088.1	Protein Homology	CDS	1574457	1575338	.	+	0	ID=cds1422;Parent=gene1479;Dbxref=Genbank:WP_002227834.1;Name=WP_002227834.1;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_002227834.1;transl_table=11
NC_004088.1	RefSeq	gene	1575356	1576414	.	+	.	ID=gene1480;Name=Y_RS07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07425;old_locus_tag=y1419
NC_004088.1	Protein Homology	CDS	1575356	1576414	.	+	0	ID=cds1423;Parent=gene1480;Dbxref=Genbank:WP_002208557.1;Name=WP_002208557.1;gbkey=CDS;product=outer membrane protein assembly factor BamC;protein_id=WP_002208557.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1576440	1577157	.	+	.	ID=id195;gbkey=repeat_region
NC_004088.1	RefSeq	region	1576444	1577153	.	+	.	ID=id196;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1576444	1576599	.	+	.	ID=gene1481;Name=Y_RS07430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07430
NC_004088.1	Protein Homology	CDS	1576444	1576599	.	+	0	ID=cds1424;Parent=gene1481;Dbxref=Genbank:WP_002213757.1;Name=WP_002213757.1;gbkey=CDS;product=invasin;protein_id=WP_002213757.1;transl_table=11
NC_004088.1	RefSeq	gene	1576589	1577047	.	+	.	ID=gene1482;Name=Y_RS07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07435;old_locus_tag=y1420
NC_004088.1	Protein Homology	CDS	1576589	1577047	.	+	0	ID=cds1425;Parent=gene1482;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	1577195	1577908	.	+	.	ID=gene1483;Name=Y_RS07440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07440;old_locus_tag=y1421
NC_004088.1	Protein Homology	CDS	1577195	1577908	.	+	0	ID=cds1426;Parent=gene1483;Dbxref=Genbank:WP_002208555.1;Name=WP_002208555.1;Note=catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase;gbkey=CDS;product=phosphoribosylaminoimidazole-succinocarboxamide synthase;protein_id=WP_002208555.1;transl_table=11
NC_004088.1	RefSeq	gene	1578127	1578993	.	+	.	ID=gene1484;Name=Y_RS07445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07445;old_locus_tag=y1422
NC_004088.1	Protein Homology	CDS	1578127	1578993	.	+	0	ID=cds1427;Parent=gene1484;Dbxref=Genbank:WP_002208554.1;Name=WP_002208554.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208554.1;transl_table=11
NC_004088.1	RefSeq	gene	1579087	1579539	.	+	.	ID=gene1485;Name=Y_RS07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07450;old_locus_tag=y1423
NC_004088.1	Protein Homology	CDS	1579087	1579539	.	+	0	ID=cds1428;Parent=gene1485;Dbxref=Genbank:WP_002208553.1;Name=WP_002208553.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208553.1;transl_table=11
NC_004088.1	RefSeq	gene	1579541	1581640	.	+	.	ID=gene1486;Name=Y_RS07455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07455;old_locus_tag=y1424
NC_004088.1	Protein Homology	CDS	1579541	1581640	.	+	0	ID=cds1429;Parent=gene1486;Dbxref=Genbank:WP_002208552.1;Name=WP_002208552.1;Note=cetylates the wobble base C34 of the elongation-specific methionine tRNA;gbkey=CDS;product=tRNA(Met) cytidine acetyltransferase TmcA;protein_id=WP_002208552.1;transl_table=11
NC_004088.1	RefSeq	gene	1581845	1582039	.	-	.	ID=gene1487;Name=Y_RS07460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07460;old_locus_tag=y1425
NC_004088.1	Protein Homology	CDS	1581845	1582039	.	-	0	ID=cds1430;Parent=gene1487;Dbxref=Genbank:WP_002208551.1;Name=WP_002208551.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208551.1;transl_table=11
NC_004088.1	RefSeq	gene	1582107	1582784	.	-	.	ID=gene1488;Name=Y_RS07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07465;old_locus_tag=y1426
NC_004088.1	Protein Homology	CDS	1582107	1582784	.	-	0	ID=cds1431;Parent=gene1488;Dbxref=Genbank:WP_002208550.1;Name=WP_002208550.1;gbkey=CDS;product=carboxypeptidase;protein_id=WP_002208550.1;transl_table=11
NC_004088.1	RefSeq	gene	1582781	1583908	.	-	.	ID=gene1489;Name=Y_RS07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07470;old_locus_tag=y1427
NC_004088.1	Protein Homology	CDS	1582781	1583908	.	-	0	ID=cds1432;Parent=gene1489;Dbxref=Genbank:WP_002208549.1;Name=WP_002208549.1;gbkey=CDS;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_002208549.1;transl_table=11
NC_004088.1	RefSeq	gene	1583910	1584308	.	-	.	ID=gene1490;Name=Y_RS07475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07475;old_locus_tag=y1428
NC_004088.1	Protein Homology	CDS	1583910	1584308	.	-	0	ID=cds1433;Parent=gene1490;Dbxref=Genbank:WP_002208548.1;Name=WP_002208548.1;gbkey=CDS;product=reductase;protein_id=WP_002208548.1;transl_table=11
NC_004088.1	RefSeq	gene	1584468	1584941	.	-	.	ID=gene1491;Name=Y_RS07480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07480;old_locus_tag=y1429
NC_004088.1	Protein Homology	CDS	1584468	1584941	.	-	0	ID=cds1434;Parent=gene1491;Dbxref=Genbank:WP_002208547.1;Name=WP_002208547.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208547.1;transl_table=11
NC_004088.1	RefSeq	gene	1585252	1586340	.	+	.	ID=gene1492;Name=Y_RS07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07485;old_locus_tag=y1430
NC_004088.1	Protein Homology	CDS	1585252	1586340	.	+	0	ID=cds1435;Parent=gene1492;Dbxref=Genbank:WP_002208546.1;Name=WP_002208546.1;gbkey=CDS;product=iron ABC transporter substrate-binding protein;protein_id=WP_002208546.1;transl_table=11
NC_004088.1	RefSeq	gene	1586435	1588204	.	+	.	ID=gene1493;Name=Y_RS07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07490;old_locus_tag=y1431
NC_004088.1	Protein Homology	CDS	1586435	1588204	.	+	0	ID=cds1436;Parent=gene1493;Dbxref=Genbank:WP_002208545.1;Name=WP_002208545.1;gbkey=CDS;product=spermidine/putrescine ABC transporter permease;protein_id=WP_002208545.1;transl_table=11
NC_004088.1	RefSeq	gene	1588197	1589267	.	+	.	ID=gene1494;Name=Y_RS07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07495;old_locus_tag=y1432
NC_004088.1	Protein Homology	CDS	1588197	1589267	.	+	0	ID=cds1437;Parent=gene1494;Dbxref=Genbank:WP_002208544.1;Name=WP_002208544.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002208544.1;transl_table=11
NC_004088.1	RefSeq	gene	1589748	1591418	.	+	.	ID=gene1495;Name=Y_RS07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07500;old_locus_tag=y1434
NC_004088.1	Protein Homology	CDS	1589748	1591418	.	+	0	ID=cds1438;Parent=gene1495;Dbxref=Genbank:WP_002378486.1;Name=WP_002378486.1;gbkey=CDS;product=sulfatase;protein_id=WP_002378486.1;transl_table=11
NC_004088.1	RefSeq	gene	1591476	1592651	.	+	.	ID=gene1496;Name=Y_RS07505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07505;old_locus_tag=y1436
NC_004088.1	Protein Homology	CDS	1591476	1592651	.	+	0	ID=cds1439;Parent=gene1496;Dbxref=Genbank:WP_002208542.1;Name=WP_002208542.1;gbkey=CDS;product=anaerobic sulfatase maturase;protein_id=WP_002208542.1;transl_table=11
NC_004088.1	RefSeq	gene	1593405	1593953	.	-	.	ID=gene1497;Name=Y_RS07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07510;old_locus_tag=y1437
NC_004088.1	Protein Homology	CDS	1593405	1593953	.	-	0	ID=cds1440;Parent=gene1497;Dbxref=Genbank:WP_002208541.1;Name=WP_002208541.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208541.1;transl_table=11
NC_004088.1	RefSeq	gene	1594242	1594826	.	-	.	ID=gene1498;Name=Y_RS07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07515;old_locus_tag=y1438
NC_004088.1	Protein Homology	CDS	1594242	1594826	.	-	0	ID=cds1441;Parent=gene1498;Dbxref=Genbank:WP_002208540.1;Name=WP_002208540.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208540.1;transl_table=11
NC_004088.1	RefSeq	gene	1595057	1598188	.	-	.	ID=gene1499;Name=Y_RS07520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07520;old_locus_tag=y1439
NC_004088.1	Protein Homology	CDS	1595057	1598188	.	-	0	ID=cds1442;Parent=gene1499;Dbxref=Genbank:WP_002208539.1;Name=WP_002208539.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_002208539.1;transl_table=11
NC_004088.1	RefSeq	gene	1598603	1598881	.	+	.	ID=gene1500;Name=Y_RS07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07525;old_locus_tag=y1440
NC_004088.1	Protein Homology	CDS	1598603	1598881	.	+	0	ID=cds1443;Parent=gene1500;Dbxref=Genbank:WP_002208538.1;Name=WP_002208538.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208538.1;transl_table=11
NC_004088.1	RefSeq	gene	1598894	1599523	.	-	.	ID=gene1501;Name=Y_RS07530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07530;old_locus_tag=y1441
NC_004088.1	Protein Homology	CDS	1598894	1599523	.	-	0	ID=cds1444;Parent=gene1501;Dbxref=Genbank:WP_002208537.1;Name=WP_002208537.1;Note=nitrate/nitrite response regulator NarP%3B NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems%3B represses expression of other anaerobic genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208537.1;transl_table=11
NC_004088.1	RefSeq	gene	1600356	1600859	.	+	.	ID=gene1502;Name=Y_RS07535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07535;old_locus_tag=y1442
NC_004088.1	Protein Homology	CDS	1600356	1600859	.	+	0	ID=cds1445;Parent=gene1502;Dbxref=Genbank:WP_002208536.1;Name=WP_002208536.1;gbkey=CDS;product=ferredoxin-type protein NapF;protein_id=WP_002208536.1;transl_table=11
NC_004088.1	RefSeq	gene	1600849	1601115	.	+	.	ID=gene1503;Name=Y_RS07540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07540;old_locus_tag=y1443
NC_004088.1	Protein Homology	CDS	1600849	1601115	.	+	0	ID=cds1446;Parent=gene1503;Dbxref=Genbank:WP_002208535.1;Name=WP_002208535.1;gbkey=CDS;product=nitrate reductase;protein_id=WP_002208535.1;transl_table=11
NC_004088.1	RefSeq	gene	1601112	1603604	.	+	.	ID=gene1504;Name=Y_RS07545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS07545;pseudo=true
NC_004088.1	Protein Homology	CDS	1601112	1603604	.	+	0	ID=cds1447;Parent=gene1504;Note=periplasmic%3B catalytic subunit%3B with NapBC catalyzes the reduction of nitrate to nitrite%3B NapAB receives electrons from NapC;gbkey=CDS;product=nitrate reductase;pseudo=true;transl_except=(pos:1601724..1601726%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	1603687	1604154	.	+	.	ID=gene1505;Name=napB;gbkey=Gene;gene=napB;gene_biotype=protein_coding;locus_tag=Y_RS07550;old_locus_tag=y1446
NC_004088.1	Protein Homology	CDS	1603687	1604154	.	+	0	ID=cds1448;Parent=gene1505;Dbxref=Genbank:WP_002208532.1;Name=WP_002208532.1;Note=small subunit of periplasmic nitrate reductase%3B receives electrons from the membrane-bound NapC and passes them to NapA;gbkey=CDS;gene=napB;product=nitrate reductase cytochrome C550 subunit;protein_id=WP_002208532.1;transl_table=11
NC_004088.1	RefSeq	gene	1604182	1604781	.	+	.	ID=gene1506;Name=Y_RS07555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07555;old_locus_tag=y1447
NC_004088.1	Protein Homology	CDS	1604182	1604781	.	+	0	ID=cds1449;Parent=gene1506;Dbxref=Genbank:WP_002228406.1;Name=WP_002228406.1;Note=with NapABDFGH functions as a nitrate reductase%3B NapC functions as an electron shuttle between NapAB and NapGH or quinone;gbkey=CDS;product=cytochrome C protein NapC;protein_id=WP_002228406.1;transl_table=11
NC_004088.1	RefSeq	gene	1604965	1605561	.	+	.	ID=gene1507;Name=Y_RS07560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07560;old_locus_tag=y1448
NC_004088.1	Protein Homology	CDS	1604965	1605561	.	+	0	ID=cds1450;Parent=gene1507;Dbxref=Genbank:WP_002208529.1;Name=WP_002208529.1;gbkey=CDS;product=GDP-mannose pyrophosphatase NudK;protein_id=WP_002208529.1;transl_table=11
NC_004088.1	RefSeq	gene	1605757	1608036	.	+	.	ID=gene1508;Name=Y_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07565;old_locus_tag=y1449
NC_004088.1	Protein Homology	CDS	1605757	1608036	.	+	0	ID=cds1451;Parent=gene1508;Dbxref=Genbank:WP_002224829.1;Name=WP_002224829.1;Note=NADP-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B decarboxylates oxaloacetate;gbkey=CDS;product=NADP-dependent malic enzyme;protein_id=WP_002224829.1;transl_table=11
NC_004088.1	RefSeq	gene	1608187	1608645	.	-	.	ID=gene1509;Name=Y_RS07570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07570;old_locus_tag=y1450
NC_004088.1	Protein Homology	CDS	1608187	1608645	.	-	0	ID=cds1452;Parent=gene1509;Dbxref=Genbank:WP_002208527.1;Name=WP_002208527.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208527.1;transl_table=11
NC_004088.1	RefSeq	gene	1608645	1609574	.	-	.	ID=gene1510;Name=Y_RS07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07575;old_locus_tag=y1451
NC_004088.1	Protein Homology	CDS	1608645	1609574	.	-	0	ID=cds1453;Parent=gene1510;Dbxref=Genbank:WP_002208526.1;Name=WP_002208526.1;Note=catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_002208526.1;transl_table=11
NC_004088.1	RefSeq	gene	1609857	1610282	.	+	.	ID=gene1511;Name=Y_RS07580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07580;old_locus_tag=y1452
NC_004088.1	Protein Homology	CDS	1609857	1610282	.	+	0	ID=cds1454;Parent=gene1511;Dbxref=Genbank:WP_002208525.1;Name=WP_002208525.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_002208525.1;transl_table=11
NC_004088.1	RefSeq	gene	1610464	1610649	.	-	.	ID=gene1512;Name=Y_RS07585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07585
NC_004088.1	Protein Homology	CDS	1610464	1610649	.	-	0	ID=cds1455;Parent=gene1512;Dbxref=Genbank:WP_002216562.1;Name=WP_002216562.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216562.1;transl_table=11
NC_004088.1	RefSeq	gene	1610755	1611171	.	+	.	ID=gene1513;Name=Y_RS07590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07590;old_locus_tag=y1453
NC_004088.1	Protein Homology	CDS	1610755	1611171	.	+	0	ID=cds1456;Parent=gene1513;Dbxref=Genbank:WP_002208524.1;Name=WP_002208524.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208524.1;transl_table=11
NC_004088.1	RefSeq	gene	1611263	1613542	.	-	.	ID=gene1514;Name=Y_RS07595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07595;old_locus_tag=y1454
NC_004088.1	Protein Homology	CDS	1611263	1613542	.	-	0	ID=cds1457;Parent=gene1514;Dbxref=Genbank:WP_002208523.1;Name=WP_002208523.1;gbkey=CDS;product=autotransporter;protein_id=WP_002208523.1;transl_table=11
NC_004088.1	RefSeq	gene	1614029	1614442	.	-	.	ID=gene1515;Name=Y_RS07600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07600;old_locus_tag=y1455
NC_004088.1	Protein Homology	CDS	1614029	1614442	.	-	0	ID=cds1458;Parent=gene1515;Dbxref=Genbank:WP_002208522.1;Name=WP_002208522.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208522.1;transl_table=11
NC_004088.1	RefSeq	gene	1614801	1615412	.	+	.	ID=gene1516;Name=Y_RS07605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07605;old_locus_tag=y1456
NC_004088.1	Protein Homology	CDS	1614801	1615412	.	+	0	ID=cds1459;Parent=gene1516;Dbxref=Genbank:WP_002208521.1;Name=WP_002208521.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208521.1;transl_table=11
NC_004088.1	RefSeq	gene	1615590	1616489	.	+	.	ID=gene1517;Name=Y_RS07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07610;old_locus_tag=y1457
NC_004088.1	Protein Homology	CDS	1615590	1616489	.	+	0	ID=cds1460;Parent=gene1517;Dbxref=Genbank:WP_002208519.1;Name=WP_002208519.1;gbkey=CDS;product=deferrochelatase/peroxidase YfeX;protein_id=WP_002208519.1;transl_table=11
NC_004088.1	RefSeq	gene	1616586	1617479	.	-	.	ID=gene1518;Name=Y_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07615;old_locus_tag=y1458
NC_004088.1	Protein Homology	CDS	1616586	1617479	.	-	0	ID=cds1461;Parent=gene1518;Dbxref=Genbank:WP_002232389.1;Name=WP_002232389.1;gbkey=CDS;product=N-acetylneuraminate lyase;protein_id=WP_002232389.1;transl_table=11
NC_004088.1	RefSeq	gene	1617542	1618165	.	-	.	ID=gene1519;Name=Y_RS07620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07620;old_locus_tag=y1459
NC_004088.1	Protein Homology	CDS	1617542	1618165	.	-	0	ID=cds1462;Parent=gene1519;Dbxref=Genbank:WP_002354634.1;Name=WP_002354634.1;Note=Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate;gbkey=CDS;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_002354634.1;transl_table=11
NC_004088.1	RefSeq	gene	1618449	1619576	.	-	.	ID=gene1520;Name=Y_RS07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07625;old_locus_tag=y1460
NC_004088.1	Protein Homology	CDS	1618449	1619576	.	-	0	ID=cds1463;Parent=gene1520;Dbxref=Genbank:WP_002224823.1;Name=WP_002224823.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224823.1;transl_table=11
NC_004088.1	RefSeq	gene	1619845	1620717	.	+	.	ID=gene1521;Name=Y_RS07630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07630;old_locus_tag=y1461
NC_004088.1	Protein Homology	CDS	1619845	1620717	.	+	0	ID=cds1464;Parent=gene1521;Dbxref=Genbank:WP_002208516.1;Name=WP_002208516.1;Note=catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein;gbkey=CDS;product=N-acetylmannosamine kinase;protein_id=WP_002208516.1;transl_table=11
NC_004088.1	RefSeq	gene	1620799	1621269	.	+	.	ID=gene1522;Name=Y_RS07635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07635;old_locus_tag=y1462
NC_004088.1	Protein Homology	CDS	1620799	1621269	.	+	0	ID=cds1465;Parent=gene1522;Dbxref=Genbank:WP_002208515.1;Name=WP_002208515.1;gbkey=CDS;product=sugar isomerase;protein_id=WP_002208515.1;transl_table=11
NC_004088.1	RefSeq	gene	1621309	1621461	.	+	.	ID=gene1523;Name=Y_RS07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07640;old_locus_tag=y1463
NC_004088.1	Protein Homology	CDS	1621309	1621461	.	+	0	ID=cds1466;Parent=gene1523;Dbxref=Genbank:WP_002215009.1;Name=WP_002215009.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215009.1;transl_table=11
NC_004088.1	RefSeq	gene	1621458	1622336	.	+	.	ID=gene1524;Name=Y_RS07645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07645;old_locus_tag=y1464
NC_004088.1	Protein Homology	CDS	1621458	1622336	.	+	0	ID=cds1467;Parent=gene1524;Dbxref=Genbank:WP_002208514.1;Name=WP_002208514.1;gbkey=CDS;product=N-acetylmannosamine kinase;protein_id=WP_002208514.1;transl_table=11
NC_004088.1	RefSeq	gene	1622941	1624473	.	+	.	ID=gene1525;Name=Y_RS07650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07650;old_locus_tag=y1465
NC_004088.1	Protein Homology	CDS	1622941	1624473	.	+	0	ID=cds1468;Parent=gene1525;Dbxref=Genbank:WP_002208513.1;Name=WP_002208513.1;gbkey=CDS;product=sialic acid transporter;protein_id=WP_002208513.1;transl_table=11
NC_004088.1	RefSeq	gene	1624788	1625825	.	+	.	ID=gene1526;Name=Y_RS07655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07655;old_locus_tag=y1466
NC_004088.1	Protein Homology	CDS	1624788	1625825	.	+	0	ID=cds1469;Parent=gene1526;Dbxref=Genbank:WP_002208512.1;Name=WP_002208512.1;gbkey=CDS;product=thiosulfate transporter subunit;protein_id=WP_002208512.1;transl_table=11
NC_004088.1	RefSeq	gene	1625825	1626658	.	+	.	ID=gene1527;Name=Y_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07660;old_locus_tag=y1467
NC_004088.1	Protein Homology	CDS	1625825	1626658	.	+	0	ID=cds1470;Parent=gene1527;Dbxref=Genbank:WP_002208511.1;Name=WP_002208511.1;gbkey=CDS;product=sulfate/thiosulfate transporter subunit;protein_id=WP_002208511.1;transl_table=11
NC_004088.1	RefSeq	gene	1626658	1627533	.	+	.	ID=gene1528;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=Y_RS07665;old_locus_tag=y1468
NC_004088.1	Protein Homology	CDS	1626658	1627533	.	+	0	ID=cds1471;Parent=gene1528;Dbxref=Genbank:WP_002208510.1;Name=WP_002208510.1;Note=Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import;gbkey=CDS;gene=cysW;product=sulfate/thiosulfate transporter permease subunit;protein_id=WP_002208510.1;transl_table=11
NC_004088.1	RefSeq	gene	1627523	1628614	.	+	.	ID=gene1529;Name=Y_RS07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07670;old_locus_tag=y1469
NC_004088.1	Protein Homology	CDS	1627523	1628614	.	+	0	ID=cds1472;Parent=gene1529;Dbxref=Genbank:WP_002208509.1;Name=WP_002208509.1;gbkey=CDS;product=sulfate/thiosulfate import ATP-binding protein CysA;protein_id=WP_002208509.1;transl_table=11
NC_004088.1	RefSeq	gene	1628785	1629663	.	+	.	ID=gene1530;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=Y_RS07675;old_locus_tag=y1470
NC_004088.1	Protein Homology	CDS	1628785	1629663	.	+	0	ID=cds1473;Parent=gene1530;Dbxref=Genbank:WP_002208508.1;Name=WP_002208508.1;Note=catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide;gbkey=CDS;gene=cysM;product=cysteine synthase B;protein_id=WP_002208508.1;transl_table=11
NC_004088.1	RefSeq	gene	1629908	1631140	.	+	.	ID=gene1531;Name=Y_RS07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07680;old_locus_tag=y1471
NC_004088.1	Protein Homology	CDS	1629908	1631140	.	+	0	ID=cds1474;Parent=gene1531;Dbxref=Genbank:WP_002208507.1;Name=WP_002208507.1;gbkey=CDS;product=type III secretion protein GogB;protein_id=WP_002208507.1;transl_table=11
NC_004088.1	RefSeq	gene	1631521	1632228	.	-	.	ID=gene1532;Name=Y_RS07685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07685;old_locus_tag=y1472
NC_004088.1	Protein Homology	CDS	1631521	1632228	.	-	0	ID=cds1475;Parent=gene1532;Dbxref=Genbank:WP_002224818.1;Name=WP_002224818.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002224818.1;transl_table=11
NC_004088.1	RefSeq	gene	1632225	1633769	.	-	.	ID=gene1533;Name=Y_RS07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07690;old_locus_tag=y1473
NC_004088.1	Protein Homology	CDS	1632225	1633769	.	-	0	ID=cds1476;Parent=gene1533;Dbxref=Genbank:WP_002208505.1;Name=WP_002208505.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_002208505.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1633825	1633993	.	+	.	ID=id197;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1634002	1635420	.	-	.	ID=gene1534;Name=Y_RS07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07695;old_locus_tag=y1474
NC_004088.1	Protein Homology	CDS	1634002	1635420	.	-	0	ID=cds1477;Parent=gene1534;Dbxref=Genbank:WP_002208502.1;Name=WP_002208502.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208502.1;transl_table=11
NC_004088.1	RefSeq	gene	1636128	1637309	.	+	.	ID=gene1535;Name=Y_RS07700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07700;old_locus_tag=y1475
NC_004088.1	Protein Homology	CDS	1636128	1637309	.	+	0	ID=cds1478;Parent=gene1535;Dbxref=Genbank:WP_002228410.1;Name=WP_002228410.1;gbkey=CDS;product=cystathionine beta-lyase;protein_id=WP_002228410.1;transl_table=11
NC_004088.1	RefSeq	gene	1637343	1637534	.	+	.	ID=gene1536;Name=Y_RS07705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07705;old_locus_tag=y1476
NC_004088.1	Protein Homology	CDS	1637343	1637534	.	+	0	ID=cds1479;Parent=gene1536;Dbxref=Genbank:WP_002215018.1;Name=WP_002215018.1;gbkey=CDS;product=creatininase;protein_id=WP_002215018.1;transl_table=11
NC_004088.1	RefSeq	gene	1637555	1638562	.	+	.	ID=gene1537;Name=Y_RS07710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07710;old_locus_tag=y1477
NC_004088.1	Protein Homology	CDS	1637555	1638562	.	+	0	ID=cds1480;Parent=gene1537;Dbxref=Genbank:WP_002228411.1;Name=WP_002228411.1;gbkey=CDS;product=peptidase M24;protein_id=WP_002228411.1;transl_table=11
NC_004088.1	RefSeq	gene	1638705	1638902	.	+	.	ID=gene1538;Name=Y_RS07715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07715
NC_004088.1	Protein Homology	CDS	1638705	1638902	.	+	0	ID=cds1481;Parent=gene1538;Dbxref=Genbank:WP_002215023.1;Name=WP_002215023.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215023.1;transl_table=11
NC_004088.1	RefSeq	gene	1638899	1640359	.	+	.	ID=gene1539;Name=Y_RS07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07720;old_locus_tag=y1478
NC_004088.1	Protein Homology	CDS	1638899	1640359	.	+	0	ID=cds1482;Parent=gene1539;Dbxref=Genbank:WP_002208498.1;Name=WP_002208498.1;gbkey=CDS;product=permease;protein_id=WP_002208498.1;transl_table=11
NC_004088.1	RefSeq	gene	1640419	1642065	.	+	.	ID=gene1540;Name=Y_RS07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07725;old_locus_tag=y1479
NC_004088.1	Protein Homology	CDS	1640419	1642065	.	+	0	ID=cds1483;Parent=gene1540;Dbxref=Genbank:WP_002208497.1;Name=WP_002208497.1;gbkey=CDS;product=CoA-disulfide reductase;protein_id=WP_002208497.1;transl_table=11
NC_004088.1	RefSeq	gene	1642320	1644356	.	-	.	ID=gene1541;Name=Y_RS07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07730;old_locus_tag=y1480
NC_004088.1	Protein Homology	CDS	1642320	1644356	.	-	0	ID=cds1484;Parent=gene1541;Dbxref=Genbank:WP_002208496.1;Name=WP_002208496.1;Note=with MacA is involved in the export of macrolide;gbkey=CDS;product=MacB family efflux pump subunit;protein_id=WP_002208496.1;transl_table=11
NC_004088.1	RefSeq	gene	1644360	1645565	.	-	.	ID=gene1542;Name=Y_RS07735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07735;old_locus_tag=y1481
NC_004088.1	Protein Homology	CDS	1644360	1645565	.	-	0	ID=cds1485;Parent=gene1542;Dbxref=Genbank:WP_002208495.1;Name=WP_002208495.1;gbkey=CDS;product=hemolysin secretion protein D;protein_id=WP_002208495.1;transl_table=11
NC_004088.1	RefSeq	gene	1645753	1646436	.	+	.	ID=gene1543;Name=Y_RS07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07740;old_locus_tag=y1482
NC_004088.1	Protein Homology	CDS	1645753	1646436	.	+	0	ID=cds1486;Parent=gene1543;Dbxref=Genbank:WP_002208494.1;Name=WP_002208494.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002208494.1;transl_table=11
NC_004088.1	RefSeq	gene	1646462	1647811	.	+	.	ID=gene1544;Name=Y_RS07745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07745;old_locus_tag=y1483
NC_004088.1	Protein Homology	CDS	1646462	1647811	.	+	0	ID=cds1487;Parent=gene1544;Dbxref=Genbank:WP_002208493.1;Name=WP_002208493.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_002208493.1;transl_table=11
NC_004088.1	RefSeq	gene	1647897	1648091	.	+	.	ID=gene1545;Name=Y_RS07750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07750
NC_004088.1	Protein Homology	CDS	1647897	1648091	.	+	0	ID=cds1488;Parent=gene1545;Dbxref=Genbank:WP_002430126.1;Name=WP_002430126.1;gbkey=CDS;product=invasin;protein_id=WP_002430126.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1647928	1648649	.	+	.	ID=id198;gbkey=repeat_region
NC_004088.1	RefSeq	region	1647936	1648645	.	+	.	ID=id199;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1648081	1648539	.	+	.	ID=gene1546;Name=Y_RS07755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07755;old_locus_tag=y1484
NC_004088.1	Protein Homology	CDS	1648081	1648539	.	+	0	ID=cds1489;Parent=gene1546;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	1648682	1649191	.	-	.	ID=gene1547;Name=Y_RS07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07760;old_locus_tag=y1485
NC_004088.1	Protein Homology	CDS	1648682	1649191	.	-	0	ID=cds1490;Parent=gene1547;Dbxref=Genbank:WP_002208491.1;Name=WP_002208491.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS glucose transporter subunit IIA;protein_id=WP_002208491.1;transl_table=11
NC_004088.1	RefSeq	gene	1649240	1650967	.	-	.	ID=gene1548;Name=Y_RS07765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07765;old_locus_tag=y1487
NC_004088.1	Protein Homology	CDS	1649240	1650967	.	-	0	ID=cds1491;Parent=gene1548;Dbxref=Genbank:WP_002208490.1;Name=WP_002208490.1;Note=Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system;gbkey=CDS;product=phosphoenolpyruvate-protein phosphotransferase;protein_id=WP_002208490.1;transl_table=11
NC_004088.1	RefSeq	gene	1651016	1651273	.	-	.	ID=gene1549;Name=Y_RS07770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07770;old_locus_tag=y1488
NC_004088.1	Protein Homology	CDS	1651016	1651273	.	-	0	ID=cds1492;Parent=gene1549;Dbxref=Genbank:WP_002208488.1;Name=WP_002208488.1;gbkey=CDS;product=PTS sugar transporter;protein_id=WP_002208488.1;transl_table=11
NC_004088.1	RefSeq	gene	1651772	1652740	.	-	.	ID=gene1550;Name=Y_RS07775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07775;old_locus_tag=y1489
NC_004088.1	Protein Homology	CDS	1651772	1652740	.	-	0	ID=cds1493;Parent=gene1550;Dbxref=Genbank:WP_002222180.1;Name=WP_002222180.1;gbkey=CDS;product=cysteine synthase A;protein_id=WP_002222180.1;transl_table=11
NC_004088.1	RefSeq	gene	1652897	1653631	.	-	.	ID=gene1551;Name=Y_RS07780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07780;old_locus_tag=y1490
NC_004088.1	Protein Homology	CDS	1652897	1653631	.	-	0	ID=cds1494;Parent=gene1551;Dbxref=Genbank:WP_002213487.1;Name=WP_002213487.1;gbkey=CDS;product=cysteine biosynthesis protein CysZ;protein_id=WP_002213487.1;transl_table=11
NC_004088.1	RefSeq	gene	1653880	1654866	.	+	.	ID=gene1552;Name=Y_RS07785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07785;old_locus_tag=y1491
NC_004088.1	Protein Homology	CDS	1653880	1654866	.	+	0	ID=cds1495;Parent=gene1552;Dbxref=Genbank:WP_002227089.1;Name=WP_002227089.1;gbkey=CDS;product=Cell division protein ZipA homolog;protein_id=WP_002227089.1;transl_table=11
NC_004088.1	RefSeq	gene	1654957	1656969	.	+	.	ID=gene1553;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=Y_RS07790;old_locus_tag=y1492
NC_004088.1	Protein Homology	CDS	1654957	1656969	.	+	0	ID=cds1496;Parent=gene1553;Dbxref=Genbank:WP_002213368.1;Name=WP_002213368.1;Note=this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction%3B essential for DNA replication and repair of damaged DNA%3B similar to ligase LigB;gbkey=CDS;gene=ligA;product=DNA ligase;protein_id=WP_002213368.1;transl_table=11
NC_004088.1	RefSeq	gene	1656989	1657204	.	+	.	ID=gene1554;Name=Y_RS07795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07795;old_locus_tag=y1493
NC_004088.1	Protein Homology	CDS	1656989	1657204	.	+	0	ID=cds1497;Parent=gene1554;Dbxref=Genbank:WP_002213369.1;Name=WP_002213369.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213369.1;transl_table=11
NC_004088.1	RefSeq	gene	1657305	1657652	.	-	.	ID=gene1555;Name=Y_RS07800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07800
NC_004088.1	Protein Homology	CDS	1657305	1657652	.	-	0	ID=cds1498;Parent=gene1555;Dbxref=Genbank:WP_002213372.1;Name=WP_002213372.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213372.1;transl_table=11
NC_004088.1	RefSeq	gene	1657784	1658389	.	-	.	ID=gene1556;Name=Y_RS07805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07805;old_locus_tag=y1496
NC_004088.1	Protein Homology	CDS	1657784	1658389	.	-	0	ID=cds1499;Parent=gene1556;Dbxref=Genbank:WP_002213374.1;Name=WP_002213374.1;gbkey=CDS;product=nitrate reductase;protein_id=WP_002213374.1;transl_table=11
NC_004088.1	RefSeq	gene	1658584	1658659	.	-	.	ID=gene1557;Name=Y_RS07810;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS07810;old_locus_tag=yt036
NC_004088.1	tRNAscan-SE	tRNA	1658584	1658659	.	-	.	ID=rna53;Parent=gene1557;anticodon=(pos:complement(1658624..1658626));gbkey=tRNA;product=tRNA-Ala
NC_004088.1	tRNAscan-SE	exon	1658584	1658659	.	-	.	ID=id200;Parent=rna53;anticodon=(pos:complement(1658624..1658626));gbkey=tRNA;product=tRNA-Ala
NC_004088.1	RefSeq	gene	1658737	1658812	.	-	.	ID=gene1558;Name=Y_RS07815;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS07815;old_locus_tag=yt037
NC_004088.1	tRNAscan-SE	tRNA	1658737	1658812	.	-	.	ID=rna54;Parent=gene1558;anticodon=(pos:complement(1658777..1658779));gbkey=tRNA;product=tRNA-Ala
NC_004088.1	tRNAscan-SE	exon	1658737	1658812	.	-	.	ID=id201;Parent=rna54;anticodon=(pos:complement(1658777..1658779));gbkey=tRNA;product=tRNA-Ala
NC_004088.1	RefSeq	repeat_region	1658993	1659717	.	+	.	ID=id202;gbkey=repeat_region
NC_004088.1	RefSeq	region	1658997	1659706	.	-	.	ID=id203;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1659103	1659561	.	-	.	ID=gene1559;Name=Y_RS07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07820;old_locus_tag=y1497
NC_004088.1	Protein Homology	CDS	1659103	1659561	.	-	0	ID=cds1500;Parent=gene1559;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1659754	1661169	.	-	.	ID=gene1560;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=Y_RS07825;old_locus_tag=y1498
NC_004088.1	Protein Homology	CDS	1659754	1661169	.	-	0	ID=cds1501;Parent=gene1560;Dbxref=Genbank:WP_002222185.1;Name=WP_002222185.1;Note=catalyzes a two-step reaction%2C first charging an glutamate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes;gbkey=CDS;gene=gltX;product=glutamate--tRNA ligase;protein_id=WP_002222185.1;transl_table=11
NC_004088.1	RefSeq	gene	1661444	1661519	.	+	.	ID=gene1561;Name=Y_RS07830;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS07830;old_locus_tag=yt038
NC_004088.1	tRNAscan-SE	tRNA	1661444	1661519	.	+	.	ID=rna55;Parent=gene1561;anticodon=(pos:1661477..1661479);gbkey=tRNA;product=tRNA-Val
NC_004088.1	tRNAscan-SE	exon	1661444	1661519	.	+	.	ID=id204;Parent=rna55;anticodon=(pos:1661477..1661479);gbkey=tRNA;product=tRNA-Val
NC_004088.1	RefSeq	gene	1661556	1661631	.	+	.	ID=gene1562;Name=Y_RS07835;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS07835;old_locus_tag=yt039
NC_004088.1	tRNAscan-SE	tRNA	1661556	1661631	.	+	.	ID=rna56;Parent=gene1562;anticodon=(pos:1661589..1661591);gbkey=tRNA;product=tRNA-Val
NC_004088.1	tRNAscan-SE	exon	1661556	1661631	.	+	.	ID=id205;Parent=rna56;anticodon=(pos:1661589..1661591);gbkey=tRNA;product=tRNA-Val
NC_004088.1	RefSeq	gene	1661676	1661751	.	+	.	ID=gene1563;Name=Y_RS07840;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS07840;old_locus_tag=yt040
NC_004088.1	tRNAscan-SE	tRNA	1661676	1661751	.	+	.	ID=rna57;Parent=gene1563;anticodon=(pos:1661709..1661711);gbkey=tRNA;product=tRNA-Val
NC_004088.1	tRNAscan-SE	exon	1661676	1661751	.	+	.	ID=id206;Parent=rna57;anticodon=(pos:1661709..1661711);gbkey=tRNA;product=tRNA-Val
NC_004088.1	RefSeq	gene	1661951	1662026	.	+	.	ID=gene1564;Name=Y_RS07845;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS07845;old_locus_tag=yt041
NC_004088.1	tRNAscan-SE	tRNA	1661951	1662026	.	+	.	ID=rna58;Parent=gene1564;anticodon=(pos:1661984..1661986);gbkey=tRNA;product=tRNA-Lys
NC_004088.1	tRNAscan-SE	exon	1661951	1662026	.	+	.	ID=id207;Parent=rna58;anticodon=(pos:1661984..1661986);gbkey=tRNA;product=tRNA-Lys
NC_004088.1	RefSeq	gene	1662403	1663587	.	-	.	ID=gene1565;Name=Y_RS07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07850;old_locus_tag=y1499
NC_004088.1	Protein Homology	CDS	1662403	1663587	.	-	0	ID=cds1502;Parent=gene1565;Dbxref=Genbank:WP_002211622.1;Name=WP_002211622.1;gbkey=CDS;product=nucleoside permease;protein_id=WP_002211622.1;transl_table=11
NC_004088.1	RefSeq	gene	1664038	1665267	.	+	.	ID=gene1566;Name=Y_RS07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07855;old_locus_tag=y1500
NC_004088.1	Protein Homology	CDS	1664038	1665267	.	+	0	ID=cds1503;Parent=gene1566;Dbxref=Genbank:WP_002211621.1;Name=WP_002211621.1;gbkey=CDS;product=divalent metal cation transporter MntH;protein_id=WP_002211621.1;transl_table=11
NC_004088.1	RefSeq	gene	1665360	1665674	.	-	.	ID=gene1567;Name=Y_RS07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07860;old_locus_tag=y1501
NC_004088.1	Protein Homology	CDS	1665360	1665674	.	-	0	ID=cds1504;Parent=gene1567;Dbxref=Genbank:WP_002354622.1;Name=WP_002354622.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002354622.1;transl_table=11
NC_004088.1	RefSeq	gene	1665944	1666933	.	-	.	ID=gene1568;Name=Y_RS07865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07865;old_locus_tag=y1502
NC_004088.1	Protein Homology	CDS	1665944	1666933	.	-	0	ID=cds1505;Parent=gene1568;Dbxref=Genbank:WP_002232425.1;Name=WP_002232425.1;gbkey=CDS;product=glyceraldehyde 3-phosphate reductase;protein_id=WP_002232425.1;transl_table=11
NC_004088.1	RefSeq	gene	1667069	1667947	.	-	.	ID=gene1569;Name=Y_RS07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07870;old_locus_tag=y1503
NC_004088.1	Protein Homology	CDS	1667069	1667947	.	-	0	ID=cds1506;Parent=gene1569;Dbxref=Genbank:WP_002211617.1;Name=WP_002211617.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002211617.1;transl_table=11
NC_004088.1	RefSeq	gene	1668050	1668526	.	+	.	ID=gene1570;Name=Y_RS07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07875;old_locus_tag=y1504
NC_004088.1	Protein Homology	CDS	1668050	1668526	.	+	0	ID=cds1507;Parent=gene1570;Dbxref=Genbank:WP_002211616.1;Name=WP_002211616.1;gbkey=CDS;product=Na+-translocating NADH-quinone reductase subunit E;protein_id=WP_002211616.1;transl_table=11
NC_004088.1	RefSeq	gene	1668707	1669678	.	+	.	ID=gene1571;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=Y_RS07880;old_locus_tag=y1505
NC_004088.1	Protein Homology	CDS	1668707	1669678	.	+	0	ID=cds1508;Parent=gene1571;Dbxref=Genbank:WP_002211615.1;Name=WP_002211615.1;Note=catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate;gbkey=CDS;gene=glk;product=glucokinase;protein_id=WP_002211615.1;transl_table=11
NC_004088.1	RefSeq	gene	1669756	1671003	.	-	.	ID=gene1572;Name=Y_RS07885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07885;old_locus_tag=y1506
NC_004088.1	Protein Homology	CDS	1669756	1671003	.	-	0	ID=cds1509;Parent=gene1572;Dbxref=Genbank:WP_002211614.1;Name=WP_002211614.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_002211614.1;transl_table=11
NC_004088.1	RefSeq	gene	1671269	1672504	.	+	.	ID=gene1573;Name=Y_RS07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07890;old_locus_tag=y1507
NC_004088.1	Protein Homology	CDS	1671269	1672504	.	+	0	ID=cds1510;Parent=gene1573;Dbxref=Genbank:WP_002211613.1;Name=WP_002211613.1;gbkey=CDS;product=aminotransferase;protein_id=WP_002211613.1;transl_table=11
NC_004088.1	RefSeq	gene	1672768	1673292	.	+	.	ID=gene1574;Name=Y_RS07895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07895;old_locus_tag=y1510
NC_004088.1	Protein Homology	CDS	1672768	1673292	.	+	0	ID=cds1511;Parent=gene1574;Dbxref=Genbank:WP_002211611.1;Name=WP_002211611.1;gbkey=CDS;product=cytochrome B;protein_id=WP_002211611.1;transl_table=11
NC_004088.1	RefSeq	gene	1673387	1673818	.	-	.	ID=gene1575;Name=Y_RS07900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07900;old_locus_tag=y1511
NC_004088.1	Protein Homology	CDS	1673387	1673818	.	-	0	ID=cds1512;Parent=gene1575;Dbxref=Genbank:WP_002211610.1;Name=WP_002211610.1;gbkey=CDS;product=antitoxin HicB;protein_id=WP_002211610.1;transl_table=11
NC_004088.1	RefSeq	gene	1674408	1675079	.	+	.	ID=gene1576;Name=Y_RS07905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07905;old_locus_tag=y1512
NC_004088.1	Protein Homology	CDS	1674408	1675079	.	+	0	ID=cds1513;Parent=gene1576;Dbxref=Genbank:WP_002215847.1;Name=WP_002215847.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002215847.1;transl_table=11
NC_004088.1	RefSeq	gene	1675106	1675462	.	+	.	ID=gene1577;Name=Y_RS07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07910;old_locus_tag=y1513
NC_004088.1	Protein Homology	CDS	1675106	1675462	.	+	0	ID=cds1514;Parent=gene1577;Dbxref=Genbank:WP_002215846.1;Name=WP_002215846.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002215846.1;transl_table=11
NC_004088.1	RefSeq	gene	1675459	1676115	.	+	.	ID=gene1578;Name=Y_RS07915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07915;old_locus_tag=y1514
NC_004088.1	Protein Homology	CDS	1675459	1676115	.	+	0	ID=cds1515;Parent=gene1578;Dbxref=Genbank:WP_002211607.1;Name=WP_002211607.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002211607.1;transl_table=11
NC_004088.1	RefSeq	gene	1676361	1676930	.	-	.	ID=gene1579;Name=Y_RS07920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07920;old_locus_tag=y1515
NC_004088.1	Protein Homology	CDS	1676361	1676930	.	-	0	ID=cds1516;Parent=gene1579;Dbxref=Genbank:WP_002211606.1;Name=WP_002211606.1;gbkey=CDS;product=(Fe-S)-binding protein;protein_id=WP_002211606.1;transl_table=11
NC_004088.1	RefSeq	gene	1676927	1677523	.	-	.	ID=gene1580;Name=Y_RS07925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07925;old_locus_tag=y1516
NC_004088.1	Protein Homology	CDS	1676927	1677523	.	-	0	ID=cds1517;Parent=gene1580;Dbxref=Genbank:WP_002228419.1;Name=WP_002228419.1;gbkey=CDS;product=nitrate reductase subunit delta;protein_id=WP_002228419.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1677549	1677899	.	+	.	ID=id208;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1678005	1678781	.	-	.	ID=gene1581;Name=Y_RS07930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07930;old_locus_tag=y1517
NC_004088.1	Protein Homology	CDS	1678005	1678781	.	-	0	ID=cds1518;Parent=gene1581;Dbxref=Genbank:WP_002211604.1;Name=WP_002211604.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_002211604.1;transl_table=11
NC_004088.1	RefSeq	gene	1678783	1679400	.	-	.	ID=gene1582;Name=Y_RS07935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07935;old_locus_tag=y1518
NC_004088.1	Protein Homology	CDS	1678783	1679400	.	-	0	ID=cds1519;Parent=gene1582;Dbxref=Genbank:WP_002211603.1;Name=WP_002211603.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit B;protein_id=WP_002211603.1;transl_table=11
NC_004088.1	RefSeq	gene	1679412	1681838	.	-	.	ID=gene1583;Name=Y_RS07940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07940;old_locus_tag=y1519
NC_004088.1	Protein Homology	CDS	1679412	1681838	.	-	0	ID=cds1520;Parent=gene1583;Dbxref=Genbank:WP_002228420.1;Name=WP_002228420.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit A;protein_id=WP_002228420.1;transl_table=11
NC_004088.1	RefSeq	gene	1682669	1683517	.	+	.	ID=gene1584;Name=Y_RS07945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07945;old_locus_tag=y1521
NC_004088.1	Protein Homology	CDS	1682669	1683517	.	+	0	ID=cds1521;Parent=gene1584;Dbxref=Genbank:WP_002211601.1;Name=WP_002211601.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211601.1;transl_table=11
NC_004088.1	RefSeq	gene	1683747	1684226	.	-	.	ID=gene1585;Name=Y_RS07950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07950;old_locus_tag=y1522
NC_004088.1	Protein Homology	CDS	1683747	1684226	.	-	0	ID=cds1522;Parent=gene1585;Dbxref=Genbank:WP_002354621.1;Name=WP_002354621.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002354621.1;transl_table=11
NC_004088.1	RefSeq	gene	1684693	1685217	.	+	.	ID=gene1586;Name=Y_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07955;old_locus_tag=y1523
NC_004088.1	Protein Homology	CDS	1684693	1685217	.	+	0	ID=cds1523;Parent=gene1586;Dbxref=Genbank:WP_002211599.1;Name=WP_002211599.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211599.1;transl_table=11
NC_004088.1	RefSeq	gene	1685290	1686339	.	-	.	ID=gene1587;Name=Y_RS07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07960;old_locus_tag=y1524
NC_004088.1	Protein Homology	CDS	1685290	1686339	.	-	0	ID=cds1524;Parent=gene1587;Dbxref=Genbank:WP_002211598.1;Name=WP_002211598.1;gbkey=CDS;product=Fe(3+) ions import ATP-binding protein FbpC;protein_id=WP_002211598.1;transl_table=11
NC_004088.1	RefSeq	gene	1686336	1687922	.	-	.	ID=gene1588;Name=Y_RS07965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07965;old_locus_tag=y1525
NC_004088.1	Protein Homology	CDS	1686336	1687922	.	-	0	ID=cds1525;Parent=gene1588;Dbxref=Genbank:WP_002215840.1;Name=WP_002215840.1;gbkey=CDS;product=iron ABC transporter permease;protein_id=WP_002215840.1;transl_table=11
NC_004088.1	RefSeq	gene	1687978	1688997	.	-	.	ID=gene1589;Name=Y_RS07970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07970;old_locus_tag=y1526
NC_004088.1	Protein Homology	CDS	1687978	1688997	.	-	0	ID=cds1526;Parent=gene1589;Dbxref=Genbank:WP_002211596.1;Name=WP_002211596.1;gbkey=CDS;product=iron ABC transporter substrate-binding protein;protein_id=WP_002211596.1;transl_table=11
NC_004088.1	RefSeq	gene	1689326	1690420	.	+	.	ID=gene1590;Name=Y_RS07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07975;old_locus_tag=y1527
NC_004088.1	Protein Homology	CDS	1689326	1690420	.	+	0	ID=cds1527;Parent=gene1590;Dbxref=Genbank:WP_002211594.1;Name=WP_002211594.1;Note=membrane-bound lytic murein transglycosylase B%3B catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan;gbkey=CDS;product=murein hydrolase B;protein_id=WP_002211594.1;transl_table=11
NC_004088.1	RefSeq	gene	1691686	1692288	.	+	.	ID=gene1591;Name=Y_RS07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07980;old_locus_tag=y1528
NC_004088.1	Protein Homology	CDS	1691686	1692288	.	+	0	ID=cds1528;Parent=gene1591;Dbxref=Genbank:WP_002211590.1;Name=WP_002211590.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_002211590.1;transl_table=11
NC_004088.1	RefSeq	gene	1692646	1693128	.	-	.	ID=gene1592;Name=Y_RS07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07985;old_locus_tag=y1529
NC_004088.1	Protein Homology	CDS	1692646	1693128	.	-	0	ID=cds1529;Parent=gene1592;Dbxref=Genbank:WP_002215321.1;Name=WP_002215321.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215321.1;transl_table=11
NC_004088.1	RefSeq	gene	1693125	1694807	.	-	.	ID=gene1593;Name=Y_RS07990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07990;old_locus_tag=y1530
NC_004088.1	Protein Homology	CDS	1693125	1694807	.	-	0	ID=cds1530;Parent=gene1593;Dbxref=Genbank:WP_002211588.1;Name=WP_002211588.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211588.1;transl_table=11
NC_004088.1	RefSeq	gene	1694808	1695509	.	-	.	ID=gene1594;Name=Y_RS07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS07995;old_locus_tag=y1531
NC_004088.1	Protein Homology	CDS	1694808	1695509	.	-	0	ID=cds1531;Parent=gene1594;Dbxref=Genbank:WP_002224806.1;Name=WP_002224806.1;gbkey=CDS;product=membrane protein;protein_id=WP_002224806.1;transl_table=11
NC_004088.1	RefSeq	gene	1695506	1696843	.	-	.	ID=gene1595;Name=Y_RS08000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08000;old_locus_tag=y1532
NC_004088.1	Protein Homology	CDS	1695506	1696843	.	-	0	ID=cds1532;Parent=gene1595;Dbxref=Genbank:WP_002211586.1;Name=WP_002211586.1;gbkey=CDS;product=glycosyltransferase;protein_id=WP_002211586.1;transl_table=11
NC_004088.1	RefSeq	gene	1696883	1697914	.	-	.	ID=gene1596;Name=Y_RS08005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08005;old_locus_tag=y1533
NC_004088.1	Protein Homology	CDS	1696883	1697914	.	-	0	ID=cds1533;Parent=gene1596;Dbxref=Genbank:WP_002215319.1;Name=WP_002215319.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002215319.1;transl_table=11
NC_004088.1	RefSeq	gene	1697921	1699102	.	-	.	ID=gene1597;Name=Y_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08010;old_locus_tag=y1534
NC_004088.1	Protein Homology	CDS	1697921	1699102	.	-	0	ID=cds1534;Parent=gene1597;Dbxref=Genbank:WP_002211584.1;Name=WP_002211584.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211584.1;transl_table=11
NC_004088.1	RefSeq	gene	1699201	1700226	.	-	.	ID=gene1598;Name=Y_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08015;old_locus_tag=y1536
NC_004088.1	Protein Homology	CDS	1699201	1700226	.	-	0	ID=cds1535;Parent=gene1598;Dbxref=Genbank:WP_002211583.1;Name=WP_002211583.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002211583.1;transl_table=11
NC_004088.1	RefSeq	gene	1700226	1702106	.	-	.	ID=gene1599;Name=Y_RS08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08020;old_locus_tag=y1537
NC_004088.1	Protein Homology	CDS	1700226	1702106	.	-	0	ID=cds1536;Parent=gene1599;Dbxref=Genbank:WP_002211582.1;Name=WP_002211582.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002211582.1;transl_table=11
NC_004088.1	RefSeq	gene	1702889	1705564	.	+	.	ID=gene1600;Name=Y_RS08025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08025;old_locus_tag=y1538
NC_004088.1	Protein Homology	CDS	1702889	1705564	.	+	0	ID=cds1537;Parent=gene1600;Dbxref=Genbank:WP_002215317.1;Name=WP_002215317.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_002215317.1;transl_table=11
NC_004088.1	RefSeq	gene	1705765	1706310	.	+	.	ID=gene1601;Name=Y_RS08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08030;old_locus_tag=y1539
NC_004088.1	Protein Homology	CDS	1705765	1706310	.	+	0	ID=cds1538;Parent=gene1601;Dbxref=Genbank:WP_002211580.1;Name=WP_002211580.1;gbkey=CDS;product=frimbrial protein;protein_id=WP_002211580.1;transl_table=11
NC_004088.1	RefSeq	gene	1706467	1707228	.	+	.	ID=gene1602;Name=Y_RS08035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08035;old_locus_tag=y1541
NC_004088.1	Protein Homology	CDS	1706467	1707228	.	+	0	ID=cds1539;Parent=gene1602;Dbxref=Genbank:WP_002211579.1;Name=WP_002211579.1;gbkey=CDS;product=pilus assembly protein;protein_id=WP_002211579.1;transl_table=11
NC_004088.1	RefSeq	gene	1707356	1708906	.	+	.	ID=gene1603;Name=Y_RS08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08040
NC_004088.1	Protein Homology	CDS	1707356	1708906	.	+	0	ID=cds1540;Parent=gene1603;Dbxref=Genbank:WP_002215157.1;Name=WP_002215157.1;gbkey=CDS;product=fimbrial usher protein;protein_id=WP_002215157.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1708890	1710209	.	+	.	ID=id209;gbkey=repeat_region
NC_004088.1	RefSeq	region	1708893	1710207	.	-	.	ID=id210;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1708928	1710136	.	-	.	ID=gene1604;Name=Y_RS08045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08045;old_locus_tag=y1542
NC_004088.1	Protein Homology	CDS	1708928	1710136	.	-	0	ID=cds1541;Parent=gene1604;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	1710161	1711351	.	+	.	ID=gene1605;Name=Y_RS08050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08050
NC_004088.1	Protein Homology	CDS	1710161	1711351	.	+	0	ID=cds1542;Parent=gene1605;Dbxref=Genbank:WP_002211577.1;Name=WP_002211577.1;gbkey=CDS;product=fimbrial usher protein;protein_id=WP_002211577.1;transl_table=11
NC_004088.1	RefSeq	gene	1711336	1711944	.	+	.	ID=gene1606;Name=Y_RS08055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08055;old_locus_tag=y1544
NC_004088.1	Protein Homology	CDS	1711336	1711944	.	+	0	ID=cds1543;Parent=gene1606;Dbxref=Genbank:WP_002211576.1;Name=WP_002211576.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002211576.1;transl_table=11
NC_004088.1	RefSeq	gene	1712049	1712573	.	+	.	ID=gene1607;Name=Y_RS08060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08060;old_locus_tag=y1545
NC_004088.1	Protein Homology	CDS	1712049	1712573	.	+	0	ID=cds1544;Parent=gene1607;Dbxref=Genbank:WP_002211575.1;Name=WP_002211575.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211575.1;transl_table=11
NC_004088.1	RefSeq	gene	1712597	1714099	.	+	.	ID=gene1608;Name=Y_RS08065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08065;old_locus_tag=y1546
NC_004088.1	Protein Homology	CDS	1712597	1714099	.	+	0	ID=cds1545;Parent=gene1608;Dbxref=Genbank:WP_002211574.1;Name=WP_002211574.1;gbkey=CDS;product=type VI secretion protein EvpB;protein_id=WP_002211574.1;transl_table=11
NC_004088.1	RefSeq	gene	1714425	1714910	.	+	.	ID=gene1609;Name=Y_RS08070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08070;old_locus_tag=y1547
NC_004088.1	Protein Homology	CDS	1714425	1714910	.	+	0	ID=cds1546;Parent=gene1609;Dbxref=Genbank:WP_002211573.1;Name=WP_002211573.1;gbkey=CDS;product=type VI secretion system effector;protein_id=WP_002211573.1;transl_table=11
NC_004088.1	RefSeq	gene	1715184	1715723	.	+	.	ID=gene1610;Name=Y_RS08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08075;old_locus_tag=y1548
NC_004088.1	Protein Homology	CDS	1715184	1715723	.	+	0	ID=cds1547;Parent=gene1610;Dbxref=Genbank:WP_002211572.1;Name=WP_002211572.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002211572.1;transl_table=11
NC_004088.1	RefSeq	gene	1715727	1717076	.	+	.	ID=gene1611;Name=Y_RS08080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08080;old_locus_tag=y1549
NC_004088.1	Protein Homology	CDS	1715727	1717076	.	+	0	ID=cds1548;Parent=gene1611;Dbxref=Genbank:WP_002211571.1;Name=WP_002211571.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002211571.1;transl_table=11
NC_004088.1	RefSeq	gene	1717073	1717741	.	+	.	ID=gene1612;Name=Y_RS08085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08085
NC_004088.1	Protein Homology	CDS	1717073	1717741	.	+	0	ID=cds1549;Parent=gene1612;Dbxref=Genbank:WP_002215165.1;Name=WP_002215165.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215165.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1717665	1719631	.	+	.	ID=id211;gbkey=repeat_region
NC_004088.1	RefSeq	region	1717669	1719622	.	+	.	ID=id212;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1717755	1718777	.	+	.	ID=gene1613;Name=Y_RS08090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08090;old_locus_tag=y1550
NC_004088.1	Protein Homology	CDS	1717755	1718777	.	+	0	ID=cds1550;Parent=gene1613;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	1718777	1719556	.	+	.	ID=gene1614;Name=Y_RS08095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08095;old_locus_tag=y1551
NC_004088.1	Protein Homology	CDS	1718777	1719556	.	+	0	ID=cds1551;Parent=gene1614;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	1719572	1720408	.	+	.	ID=gene1615;Name=Y_RS08100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08100
NC_004088.1	Protein Homology	CDS	1719572	1720408	.	+	0	ID=cds1552;Parent=gene1615;Dbxref=Genbank:WP_002209681.1;Name=WP_002209681.1;gbkey=CDS;product=polymerase;protein_id=WP_002209681.1;transl_table=11
NC_004088.1	RefSeq	gene	1720417	1724244	.	+	.	ID=gene1616;Name=Y_RS08105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08105;old_locus_tag=y1553
NC_004088.1	Protein Homology	CDS	1720417	1724244	.	+	0	ID=cds1553;Parent=gene1616;Dbxref=Genbank:WP_002214843.1;Name=WP_002214843.1;gbkey=CDS;product=type VI secretion protein IcmF;protein_id=WP_002214843.1;transl_table=11
NC_004088.1	RefSeq	gene	1724538	1727123	.	+	.	ID=gene1617;Name=Y_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08110;old_locus_tag=y1555
NC_004088.1	Protein Homology	CDS	1724538	1727123	.	+	0	ID=cds1554;Parent=gene1617;Dbxref=Genbank:WP_011055427.1;Name=WP_011055427.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_011055427.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1726784	1726883	.	+	.	ID=id213;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	1726982	1727081	.	+	.	ID=id214;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1727222	1727482	.	+	.	ID=gene1618;Name=Y_RS08115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08115;old_locus_tag=y1557
NC_004088.1	Protein Homology	CDS	1727222	1727482	.	+	0	ID=cds1555;Parent=gene1618;Dbxref=Genbank:WP_002209684.1;Name=WP_002209684.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209684.1;transl_table=11
NC_004088.1	RefSeq	gene	1727488	1728330	.	+	.	ID=gene1619;Name=Y_RS08120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08120;old_locus_tag=y1559
NC_004088.1	Protein Homology	CDS	1727488	1728330	.	+	0	ID=cds1556;Parent=gene1619;Dbxref=Genbank:WP_002354537.1;Name=WP_002354537.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002354537.1;transl_table=11
NC_004088.1	RefSeq	gene	1728350	1729156	.	+	.	ID=gene1620;Name=Y_RS08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08125;old_locus_tag=y1560
NC_004088.1	Protein Homology	CDS	1728350	1729156	.	+	0	ID=cds1557;Parent=gene1620;Dbxref=Genbank:WP_002209685.1;Name=WP_002209685.1;gbkey=CDS;product=ImpE family protein;protein_id=WP_002209685.1;transl_table=11
NC_004088.1	RefSeq	gene	1729285	1729764	.	+	.	ID=gene1621;Name=Y_RS08130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08130;old_locus_tag=y1561
NC_004088.1	Protein Homology	CDS	1729285	1729764	.	+	0	ID=cds1558;Parent=gene1621;Dbxref=Genbank:WP_002209686.1;Name=WP_002209686.1;gbkey=CDS;product=lysozyme;protein_id=WP_002209686.1;transl_table=11
NC_004088.1	RefSeq	gene	1729789	1730136	.	+	.	ID=gene1622;Name=Y_RS08135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08135;old_locus_tag=y1562
NC_004088.1	Protein Homology	CDS	1729789	1730136	.	+	0	ID=cds1559;Parent=gene1622;Dbxref=Genbank:WP_002209687.1;Name=WP_002209687.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209687.1;transl_table=11
NC_004088.1	RefSeq	gene	1730211	1730552	.	-	.	ID=gene1623;Name=Y_RS08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08140;old_locus_tag=y1563
NC_004088.1	Protein Homology	CDS	1730211	1730552	.	-	0	ID=cds1560;Parent=gene1623;Dbxref=Genbank:WP_002209688.1;Name=WP_002209688.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209688.1;transl_table=11
NC_004088.1	RefSeq	gene	1730928	1732967	.	-	.	ID=gene1624;Name=Y_RS08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08145;old_locus_tag=y1564
NC_004088.1	Protein Homology	CDS	1730928	1732967	.	-	0	ID=cds1561;Parent=gene1624;Dbxref=Genbank:WP_002209690.1;Name=WP_002209690.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209690.1;transl_table=11
NC_004088.1	RefSeq	gene	1732972	1733514	.	-	.	ID=gene1625;Name=Y_RS08150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08150;old_locus_tag=y1565
NC_004088.1	Protein Homology	CDS	1732972	1733514	.	-	0	ID=cds1562;Parent=gene1625;Dbxref=Genbank:WP_002209691.1;Name=WP_002209691.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209691.1;transl_table=11
NC_004088.1	RefSeq	gene	1733801	1733875	.	+	.	ID=gene1626;Name=Y_RS08155;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS08155;old_locus_tag=yt042
NC_004088.1	tRNAscan-SE	tRNA	1733801	1733875	.	+	.	ID=rna59;Parent=gene1626;anticodon=(pos:1733834..1733836);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	tRNAscan-SE	exon	1733801	1733875	.	+	.	ID=id215;Parent=rna59;anticodon=(pos:1733834..1733836);gbkey=tRNA;product=tRNA-Arg
NC_004088.1	RefSeq	gene	1734130	1734597	.	+	.	ID=gene1627;Name=Y_RS08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08160;old_locus_tag=y1566
NC_004088.1	Protein Homology	CDS	1734130	1734597	.	+	0	ID=cds1563;Parent=gene1627;Dbxref=Genbank:WP_002209692.1;Name=WP_002209692.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209692.1;transl_table=11
NC_004088.1	RefSeq	gene	1735042	1735698	.	+	.	ID=gene1628;Name=Y_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08165;old_locus_tag=y1567
NC_004088.1	Protein Homology	CDS	1735042	1735698	.	+	0	ID=cds1564;Parent=gene1628;Dbxref=Genbank:WP_002209693.1;Name=WP_002209693.1;gbkey=CDS;product=cytochrome c biogenesis ATP-binding export protein CcmA;protein_id=WP_002209693.1;transl_table=11
NC_004088.1	RefSeq	gene	1735668	1736327	.	+	.	ID=gene1629;Name=Y_RS08170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08170;old_locus_tag=y1568
NC_004088.1	Protein Homology	CDS	1735668	1736327	.	+	0	ID=cds1565;Parent=gene1629;Dbxref=Genbank:WP_002209694.1;Name=WP_002209694.1;Note=with CcmABCE is involved in the transport of protoheme IX%3B CcmB is required for the release of holoCcmE from CcmC;gbkey=CDS;product=heme exporter protein B;protein_id=WP_002209694.1;transl_table=11
NC_004088.1	RefSeq	gene	1736390	1737127	.	+	.	ID=gene1630;Name=Y_RS08175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08175;old_locus_tag=y1569
NC_004088.1	Protein Homology	CDS	1736390	1737127	.	+	0	ID=cds1566;Parent=gene1630;Dbxref=Genbank:WP_002209695.1;Name=WP_002209695.1;Note=with CcmABDE is involved in the transport of protoheme IX%3B CcmC is required for heme transfer to CcmE;gbkey=CDS;product=heme exporter protein C;protein_id=WP_002209695.1;transl_table=11
NC_004088.1	RefSeq	gene	1737124	1737426	.	+	.	ID=gene1631;Name=Y_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08180;old_locus_tag=y1570
NC_004088.1	Protein Homology	CDS	1737124	1737426	.	+	0	ID=cds1567;Parent=gene1631;Dbxref=Genbank:WP_002209696.1;Name=WP_002209696.1;gbkey=CDS;product=heme exporter protein D;protein_id=WP_002209696.1;transl_table=11
NC_004088.1	RefSeq	gene	1737423	1737917	.	+	.	ID=gene1632;Name=Y_RS08185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08185;old_locus_tag=y1571
NC_004088.1	Protein Homology	CDS	1737423	1737917	.	+	0	ID=cds1568;Parent=gene1632;Dbxref=Genbank:WP_002209697.1;Name=WP_002209697.1;Note=CycJ%3B periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes%3B requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome%3B part of the cytochrome c maturation system%3B periplasmic protein anchored to the inner membrane;gbkey=CDS;product=cytochrome c-type biogenesis protein CcmE;protein_id=WP_002209697.1;transl_table=11
NC_004088.1	RefSeq	gene	1737914	1739884	.	+	.	ID=gene1633;Name=Y_RS08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08190;old_locus_tag=y1572
NC_004088.1	Protein Homology	CDS	1737914	1739884	.	+	0	ID=cds1569;Parent=gene1633;Dbxref=Genbank:WP_002209698.1;Name=WP_002209698.1;Note=cytochrome c-type biogenesis protein%3B required for the transfer of heme to apocytochrome c;gbkey=CDS;product=heme lyase subunit CcmF;protein_id=WP_002209698.1;transl_table=11
NC_004088.1	RefSeq	gene	1739881	1740447	.	+	.	ID=gene1634;Name=Y_RS08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08195;old_locus_tag=y1573
NC_004088.1	Protein Homology	CDS	1739881	1740447	.	+	0	ID=cds1570;Parent=gene1634;Dbxref=Genbank:WP_002209699.1;Name=WP_002209699.1;Note=cytochrome c-type biogenesis thioredoxin%3B involved in the reduction of disulfide bonds to allow heme bonding;gbkey=CDS;product=thiol:disulfide interchange protein DsbE;protein_id=WP_002209699.1;transl_table=11
NC_004088.1	RefSeq	gene	1740444	1740956	.	+	.	ID=gene1635;Name=Y_RS08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08200;old_locus_tag=y1574
NC_004088.1	Protein Homology	CDS	1740444	1740956	.	+	0	ID=cds1571;Parent=gene1635;Dbxref=Genbank:WP_002214855.1;Name=WP_002214855.1;gbkey=CDS;product=cytochrome C biogenesis protein;protein_id=WP_002214855.1;transl_table=11
NC_004088.1	RefSeq	gene	1740956	1742182	.	+	.	ID=gene1636;Name=Y_RS08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08205;old_locus_tag=y1575
NC_004088.1	Protein Homology	CDS	1740956	1742182	.	+	0	ID=cds1572;Parent=gene1636;Dbxref=Genbank:WP_002209700.1;Name=WP_002209700.1;gbkey=CDS;product=cytochrome C;protein_id=WP_002209700.1;transl_table=11
NC_004088.1	RefSeq	gene	1742218	1742982	.	+	.	ID=gene1637;Name=Y_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08210;old_locus_tag=y1576
NC_004088.1	Protein Homology	CDS	1742218	1742982	.	+	0	ID=cds1573;Parent=gene1637;Dbxref=Genbank:WP_002209701.1;Name=WP_002209701.1;Note=involved in maintaining OM lipid asymmetry;gbkey=CDS;product=membrane protein;protein_id=WP_002209701.1;transl_table=11
NC_004088.1	RefSeq	gene	1743089	1744354	.	-	.	ID=gene1638;Name=Y_RS08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08215;old_locus_tag=y1577
NC_004088.1	Protein Homology	CDS	1743089	1744354	.	-	0	ID=cds1574;Parent=gene1638;Dbxref=Genbank:WP_002232482.1;Name=WP_002232482.1;gbkey=CDS;product=long-chain fatty acid outer membrane transporter;protein_id=WP_002232482.1;transl_table=11
NC_004088.1	RefSeq	gene	1744780	1745064	.	+	.	ID=gene1639;Name=Y_RS08220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08220;old_locus_tag=y1578
NC_004088.1	Protein Homology	CDS	1744780	1745064	.	+	0	ID=cds1575;Parent=gene1639;Dbxref=Genbank:WP_025470754.1;Name=WP_025470754.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_025470754.1;transl_table=11
NC_004088.1	RefSeq	gene	1745351	1746661	.	+	.	ID=gene1640;Name=Y_RS08225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08225;old_locus_tag=y1579
NC_004088.1	Protein Homology	CDS	1745351	1746661	.	+	0	ID=cds1576;Parent=gene1640;Dbxref=Genbank:WP_002209704.1;Name=WP_002209704.1;gbkey=CDS;product=3-ketoacyl-CoA thiolase;protein_id=WP_002209704.1;transl_table=11
NC_004088.1	RefSeq	gene	1746661	1748985	.	+	.	ID=gene1641;Name=fadJ;gbkey=Gene;gene=fadJ;gene_biotype=protein_coding;locus_tag=Y_RS08230;old_locus_tag=y1580
NC_004088.1	Protein Homology	CDS	1746661	1748985	.	+	0	ID=cds1577;Parent=gene1641;Dbxref=Genbank:WP_002209705.1;Name=WP_002209705.1;Note=multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI%3B similar to FadA2B2 complex%3B involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate;gbkey=CDS;gene=fadJ;product=fatty acid oxidation complex subunit alpha;protein_id=WP_002209705.1;transl_table=11
NC_004088.1	RefSeq	gene	1749554	1750045	.	+	.	ID=gene1642;Name=Y_RS08235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08235;old_locus_tag=y1582
NC_004088.1	Protein Homology	CDS	1749554	1750045	.	+	0	ID=cds1578;Parent=gene1642;Dbxref=Genbank:WP_002209707.1;Name=WP_002209707.1;gbkey=CDS;product=phosphohistidine phosphatase;protein_id=WP_002209707.1;transl_table=11
NC_004088.1	RefSeq	gene	1750367	1750897	.	-	.	ID=gene1643;Name=Y_RS08240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08240;old_locus_tag=y1583
NC_004088.1	Protein Homology	CDS	1750367	1750897	.	-	0	ID=cds1579;Parent=gene1643;Dbxref=Genbank:WP_002227846.1;Name=WP_002227846.1;gbkey=CDS;product=peptidase S10;protein_id=WP_002227846.1;transl_table=11
NC_004088.1	RefSeq	gene	1751267	1752199	.	+	.	ID=gene1644;Name=Y_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08245;old_locus_tag=y1584
NC_004088.1	Protein Homology	CDS	1751267	1752199	.	+	0	ID=cds1580;Parent=gene1644;Dbxref=Genbank:WP_002209710.1;Name=WP_002209710.1;Note=involved in methylation of ribosomal protein L3;gbkey=CDS;product=50S ribosomal protein L3 glutamine methyltransferase;protein_id=WP_002209710.1;transl_table=11
NC_004088.1	RefSeq	gene	1752276	1753361	.	+	.	ID=gene1645;Name=Y_RS08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08250;old_locus_tag=y1585
NC_004088.1	Protein Homology	CDS	1752276	1753361	.	+	0	ID=cds1581;Parent=gene1645;Dbxref=Genbank:WP_002209711.1;Name=WP_002209711.1;Note=catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis;gbkey=CDS;product=chorismate synthase;protein_id=WP_002209711.1;transl_table=11
NC_004088.1	RefSeq	gene	1753367	1754194	.	+	.	ID=gene1646;Name=mepA;gbkey=Gene;gene=mepA;gene_biotype=protein_coding;locus_tag=Y_RS08255;old_locus_tag=y1586
NC_004088.1	Protein Homology	CDS	1753367	1754194	.	+	0	ID=cds1582;Parent=gene1646;Dbxref=Genbank:WP_002225365.1;Name=WP_002225365.1;Note=D-alanyl-D-alanine endopeptidase%3B functions in hydrolyzing cell wall peptidoglycan%3B similar to LAS metallopeptidases%3B forms a dimer in periplasm;gbkey=CDS;gene=mepA;product=penicillin-insensitive murein endopeptidase;protein_id=WP_002225365.1;transl_table=11
NC_004088.1	RefSeq	gene	1754198	1755004	.	+	.	ID=gene1647;Name=Y_RS08260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08260;old_locus_tag=y1587
NC_004088.1	Protein Homology	CDS	1754198	1755004	.	+	0	ID=cds1583;Parent=gene1647;Dbxref=Genbank:WP_002209713.1;Name=WP_002209713.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209713.1;transl_table=11
NC_004088.1	RefSeq	gene	1755104	1755646	.	+	.	ID=gene1648;Name=Y_RS08265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08265;old_locus_tag=y1588
NC_004088.1	Protein Homology	CDS	1755104	1755646	.	+	0	ID=cds1584;Parent=gene1648;Dbxref=Genbank:WP_002209714.1;Name=WP_002209714.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209714.1;transl_table=11
NC_004088.1	RefSeq	gene	1755704	1755982	.	+	.	ID=gene1649;Name=Y_RS08270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08270;old_locus_tag=y1589
NC_004088.1	Protein Homology	CDS	1755704	1755982	.	+	0	ID=cds1585;Parent=gene1649;Dbxref=Genbank:WP_002209715.1;Name=WP_002209715.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209715.1;transl_table=11
NC_004088.1	RefSeq	gene	1756160	1758229	.	-	.	ID=gene1650;Name=mnmC;gbkey=Gene;gene=mnmC;gene_biotype=protein_coding;gene_synonym=trmC,yfcK;locus_tag=Y_RS08275;old_locus_tag=y1590
NC_004088.1	Protein Homology	CDS	1756160	1758229	.	-	0	ID=cds1586;Parent=gene1650;Dbxref=Genbank:WP_002209716.1;Name=WP_002209716.1;Note=5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme;gbkey=CDS;gene=mnmC;product=tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC;protein_id=WP_002209716.1;transl_table=11
NC_004088.1	RefSeq	gene	1758401	1759624	.	+	.	ID=gene1651;Name=Y_RS08280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08280;old_locus_tag=y1591
NC_004088.1	Protein Homology	CDS	1758401	1759624	.	+	0	ID=cds1587;Parent=gene1651;Dbxref=Genbank:WP_002209717.1;Name=WP_002209717.1;Note=FabB%2C beta-Ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;product=3-oxoacyl-ACP synthase;protein_id=WP_002209717.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1759689	1759860	.	+	.	ID=id216;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1760032	1760724	.	-	.	ID=gene1652;Name=Y_RS08285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08285;old_locus_tag=y1592
NC_004088.1	Protein Homology	CDS	1760032	1760724	.	-	0	ID=cds1588;Parent=gene1652;Dbxref=Genbank:WP_002209718.1;Name=WP_002209718.1;gbkey=CDS;product=racemase;protein_id=WP_002209718.1;transl_table=11
NC_004088.1	RefSeq	gene	1761515	1762045	.	+	.	ID=gene1653;Name=Y_RS08290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08290;old_locus_tag=y1593
NC_004088.1	Protein Homology	CDS	1761515	1762045	.	+	0	ID=cds1589;Parent=gene1653;Dbxref=Genbank:WP_002209720.1;Name=WP_002209720.1;gbkey=CDS;product=fimbria A protein;protein_id=WP_002209720.1;transl_table=11
NC_004088.1	RefSeq	gene	1762387	1763424	.	-	.	ID=gene1654;Name=Y_RS08295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08295;old_locus_tag=y1594
NC_004088.1	Protein Homology	CDS	1762387	1763424	.	-	0	ID=cds1590;Parent=gene1654;Dbxref=Genbank:WP_002209721.1;Name=WP_002209721.1;gbkey=CDS;product=flagella biosynthesis regulator;protein_id=WP_002209721.1;transl_table=11
NC_004088.1	RefSeq	gene	1763709	1764626	.	-	.	ID=gene1655;Name=Y_RS08300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08300;old_locus_tag=y1595
NC_004088.1	Protein Homology	CDS	1763709	1764626	.	-	0	ID=cds1591;Parent=gene1655;Dbxref=Genbank:WP_002209722.1;Name=WP_002209722.1;gbkey=CDS;product=multidrug DMT transporter;protein_id=WP_002209722.1;transl_table=11
NC_004088.1	RefSeq	gene	1764704	1764865	.	+	.	ID=gene1656;Name=Y_RS08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08305
NC_004088.1	Protein Homology	CDS	1764704	1764865	.	+	0	ID=cds1592;Parent=gene1656;Dbxref=Genbank:WP_002209723.1;Name=WP_002209723.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209723.1;transl_table=11
NC_004088.1	RefSeq	gene	1764852	1765637	.	+	.	ID=gene1657;Name=Y_RS08310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08310;old_locus_tag=y1596
NC_004088.1	Protein Homology	CDS	1764852	1765637	.	+	0	ID=cds1593;Parent=gene1657;Dbxref=Genbank:WP_002209724.1;Name=WP_002209724.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002209724.1;transl_table=11
NC_004088.1	RefSeq	gene	1765684	1766811	.	+	.	ID=gene1658;Name=Y_RS08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08315;old_locus_tag=y1597
NC_004088.1	Protein Homology	CDS	1765684	1766811	.	+	0	ID=cds1594;Parent=gene1658;Dbxref=Genbank:WP_002209725.1;Name=WP_002209725.1;gbkey=CDS;product=erythronate-4-phosphate dehydrogenase;protein_id=WP_002209725.1;transl_table=11
NC_004088.1	RefSeq	gene	1766981	1767991	.	+	.	ID=gene1659;Name=Y_RS08320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08320;old_locus_tag=y1598
NC_004088.1	Protein Homology	CDS	1766981	1767991	.	+	0	ID=cds1595;Parent=gene1659;Dbxref=Genbank:WP_002209726.1;Name=WP_002209726.1;gbkey=CDS;product=semialdehyde dehydrogenase;protein_id=WP_002209726.1;transl_table=11
NC_004088.1	RefSeq	gene	1768042	1768872	.	+	.	ID=gene1660;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;gene_synonym=hisT;locus_tag=Y_RS08325;old_locus_tag=y1599
NC_004088.1	Protein Homology	CDS	1768042	1768872	.	+	0	ID=cds1596;Parent=gene1660;Dbxref=Genbank:WP_032465663.1;Name=WP_032465663.1;Note=mediates pseudouridylation (positions 38%2C 39%2C 40) at the tRNA anticodon region which contributes to the structural stability;gbkey=CDS;gene=truA;product=tRNA pseudouridine synthase A;protein_id=WP_032465663.1;transl_table=11
NC_004088.1	RefSeq	gene	1769029	1769691	.	+	.	ID=gene1661;Name=Y_RS08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08330;old_locus_tag=y1600
NC_004088.1	Protein Homology	CDS	1769029	1769691	.	+	0	ID=cds1597;Parent=gene1661;Dbxref=Genbank:WP_002209728.1;Name=WP_002209728.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209728.1;transl_table=11
NC_004088.1	RefSeq	gene	1769922	1770836	.	+	.	ID=gene1662;Name=Y_RS08335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08335;old_locus_tag=y1601
NC_004088.1	Protein Homology	CDS	1769922	1770836	.	+	0	ID=cds1598;Parent=gene1662;Dbxref=Genbank:WP_002209729.1;Name=WP_002209729.1;Note=catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer of AccA2D2 subunits;gbkey=CDS;product=acetyl-CoA carboxylase carboxyltransferase subunit beta;protein_id=WP_002209729.1;transl_table=11
NC_004088.1	RefSeq	gene	1771085	1772389	.	+	.	ID=gene1663;Name=Y_RS08340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08340;old_locus_tag=y1602
NC_004088.1	Protein Homology	CDS	1771085	1772389	.	+	0	ID=cds1599;Parent=gene1663;Dbxref=Genbank:WP_002209730.1;Name=WP_002209730.1;gbkey=CDS;product=bifunctional folylpolyglutamate synthase/ dihydrofolate synthase;protein_id=WP_002209730.1;transl_table=11
NC_004088.1	RefSeq	gene	1772509	1773231	.	+	.	ID=gene1664;Name=Y_RS08345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08345;old_locus_tag=y1603
NC_004088.1	Protein Homology	CDS	1772509	1773231	.	+	0	ID=cds1600;Parent=gene1664;Dbxref=Genbank:WP_002209731.1;Name=WP_002209731.1;gbkey=CDS;product=cell division protein DedD;protein_id=WP_002209731.1;transl_table=11
NC_004088.1	RefSeq	gene	1773528	1774037	.	+	.	ID=gene1665;Name=Y_RS08350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08350;old_locus_tag=y1604
NC_004088.1	Protein Homology	CDS	1773528	1774037	.	+	0	ID=cds1601;Parent=gene1665;Dbxref=Genbank:WP_002209732.1;Name=WP_002209732.1;Note=membrane protein required for colicin V production;gbkey=CDS;product=colicin V production protein;protein_id=WP_002209732.1;transl_table=11
NC_004088.1	RefSeq	gene	1774050	1775567	.	+	.	ID=gene1666;Name=Y_RS08355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08355;old_locus_tag=y1605
NC_004088.1	Protein Homology	CDS	1774050	1775567	.	+	0	ID=cds1602;Parent=gene1666;Dbxref=Genbank:WP_002209733.1;Name=WP_002209733.1;Note=Catalyzes first step of the de novo purine nucleotide biosynthetic pathway;gbkey=CDS;product=amidophosphoribosyltransferase;protein_id=WP_002209733.1;transl_table=11
NC_004088.1	RefSeq	gene	1775814	1776386	.	+	.	ID=gene1667;Name=Y_RS08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08360;old_locus_tag=y1606
NC_004088.1	Protein Homology	CDS	1775814	1776386	.	+	0	ID=cds1603;Parent=gene1667;Dbxref=Genbank:WP_002209734.1;Name=WP_002209734.1;Note=catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate;gbkey=CDS;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=WP_002209734.1;transl_table=11
NC_004088.1	RefSeq	gene	1776911	1777693	.	+	.	ID=gene1668;Name=Y_RS08365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08365
NC_004088.1	Protein Homology	CDS	1776911	1777693	.	+	0	ID=cds1604;Parent=gene1668;Dbxref=Genbank:WP_002216029.1;Name=WP_002216029.1;Note=with HisPMQ is involved in the transport of histidine;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_002216029.1;transl_table=11
NC_004088.1	RefSeq	gene	1777796	1778482	.	+	.	ID=gene1669;Name=Y_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08370;old_locus_tag=y1608
NC_004088.1	Protein Homology	CDS	1777796	1778482	.	+	0	ID=cds1605;Parent=gene1669;Dbxref=Genbank:WP_002209736.1;Name=WP_002209736.1;Note=with HisJMP is involved in the transport of histidine/lysine/arginine/ornithine;gbkey=CDS;product=histidine/lysine/arginine/ornithine ABC transporter permease HisQ;protein_id=WP_002209736.1;transl_table=11
NC_004088.1	RefSeq	gene	1778479	1779195	.	+	.	ID=gene1670;Name=Y_RS08375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08375;old_locus_tag=y1609
NC_004088.1	Protein Homology	CDS	1778479	1779195	.	+	0	ID=cds1606;Parent=gene1670;Dbxref=Genbank:WP_002209737.1;Name=WP_002209737.1;Note=with HisJPQ is involved in transport of histidine%2C lysine%2C arginine and ornithine;gbkey=CDS;product=histidine/lysine/arginine/ornithine ABC transporter permease HisM;protein_id=WP_002209737.1;transl_table=11
NC_004088.1	RefSeq	gene	1779209	1780006	.	+	.	ID=gene1671;Name=Y_RS08380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08380;old_locus_tag=y1610
NC_004088.1	Protein Homology	CDS	1779209	1780006	.	+	0	ID=cds1607;Parent=gene1671;Dbxref=Genbank:WP_002209738.1;Name=WP_002209738.1;gbkey=CDS;product=histidine ABC transporter ATP-binding protein;protein_id=WP_002209738.1;transl_table=11
NC_004088.1	RefSeq	gene	1780130	1781038	.	-	.	ID=gene1672;Name=Y_RS08385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08385;old_locus_tag=y1611
NC_004088.1	Protein Homology	CDS	1780130	1781038	.	-	0	ID=cds1608;Parent=gene1672;Dbxref=Genbank:WP_002209739.1;Name=WP_002209739.1;gbkey=CDS;product=epimerase;protein_id=WP_002209739.1;transl_table=11
NC_004088.1	RefSeq	gene	1781392	1782084	.	+	.	ID=gene1673;Name=Y_RS08390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08390;old_locus_tag=y1612
NC_004088.1	Protein Homology	CDS	1781392	1782084	.	+	0	ID=cds1609;Parent=gene1673;Dbxref=Genbank:WP_002209740.1;Name=WP_002209740.1;gbkey=CDS;product=diguanylate phosphodiesterase;protein_id=WP_002209740.1;transl_table=11
NC_004088.1	RefSeq	gene	1782272	1782859	.	+	.	ID=gene1674;Name=Y_RS08395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08395;old_locus_tag=y1613
NC_004088.1	Protein Homology	CDS	1782272	1782859	.	+	0	ID=cds1610;Parent=gene1674;Dbxref=Genbank:WP_002225358.1;Name=WP_002225358.1;gbkey=CDS;product=phosphodiesterase;protein_id=WP_002225358.1;transl_table=11
NC_004088.1	RefSeq	gene	1783081	1783629	.	+	.	ID=gene1675;Name=Y_RS08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08400;old_locus_tag=y1614
NC_004088.1	Protein Homology	CDS	1783081	1783629	.	+	0	ID=cds1611;Parent=gene1675;Dbxref=Genbank:WP_002209742.1;Name=WP_002209742.1;gbkey=CDS;product=NUDIX hydrolase;protein_id=WP_002209742.1;transl_table=11
NC_004088.1	RefSeq	gene	1783746	1785002	.	-	.	ID=gene1676;Name=Y_RS08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08405;old_locus_tag=y1615
NC_004088.1	Protein Homology	CDS	1783746	1785002	.	-	0	ID=cds1612;Parent=gene1676;Dbxref=Genbank:WP_002222248.1;Name=WP_002222248.1;gbkey=CDS;product=PTS beta-glucoside transporter subunit IIBC;protein_id=WP_002222248.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1785069	1786387	.	+	.	ID=id217;gbkey=repeat_region
NC_004088.1	RefSeq	region	1785071	1786385	.	+	.	ID=id218;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1785142	1786350	.	+	.	ID=gene1677;Name=Y_RS08410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08410;old_locus_tag=y1616
NC_004088.1	Protein Homology	CDS	1785142	1786350	.	+	0	ID=cds1613;Parent=gene1677;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	1786372	1786626	.	-	.	ID=gene1678;Name=Y_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08415;old_locus_tag=y1617
NC_004088.1	Protein Homology	CDS	1786372	1786626	.	-	0	ID=cds1614;Parent=gene1678;Dbxref=Genbank:WP_002210293.1;Name=WP_002210293.1;gbkey=CDS;product=PTS ascorbate transporter subunit IIB;protein_id=WP_002210293.1;transl_table=11
NC_004088.1	RefSeq	gene	1786795	1787238	.	-	.	ID=gene1679;Name=cmtB;gbkey=Gene;gene=cmtB;gene_biotype=protein_coding;locus_tag=Y_RS08420;old_locus_tag=y1618
NC_004088.1	Protein Homology	CDS	1786795	1787238	.	-	0	ID=cds1615;Parent=gene1679;Dbxref=Genbank:WP_002210291.1;Name=WP_002210291.1;Note=TolM%3B with CmtA (IIBC)%2C CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system%2C which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli%3B cytoplasmic protein;gbkey=CDS;gene=cmtB;product=PTS ascorbate transporter subunit IIA;protein_id=WP_002210291.1;transl_table=11
NC_004088.1	RefSeq	gene	1787605	1788639	.	+	.	ID=gene1680;Name=Y_RS08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08425;old_locus_tag=y1619
NC_004088.1	Protein Homology	CDS	1787605	1788639	.	+	0	ID=cds1616;Parent=gene1680;Dbxref=Genbank:WP_002216059.1;Name=WP_002216059.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002216059.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1788721	1788891	.	+	.	ID=id219;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1788905	1791043	.	-	.	ID=gene1681;Name=Y_RS08430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08430;old_locus_tag=y1620
NC_004088.1	Protein Homology	CDS	1788905	1791043	.	-	0	ID=cds1617;Parent=gene1681;Dbxref=Genbank:WP_002265141.1;Name=WP_002265141.1;Note=catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate%3B when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate;gbkey=CDS;product=phosphate acetyltransferase;protein_id=WP_002265141.1;transl_table=11
NC_004088.1	RefSeq	gene	1791226	1792428	.	-	.	ID=gene1682;Name=Y_RS08435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08435;old_locus_tag=y1622
NC_004088.1	Protein Homology	CDS	1791226	1792428	.	-	0	ID=cds1618;Parent=gene1682;Dbxref=Genbank:WP_002210288.1;Name=WP_002210288.1;Note=AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation%3B utilizes magnesium and ATP%3B also involved in conversion of acetate to aceyl-CoA%3B also known to act on propionate;gbkey=CDS;product=acetate kinase;protein_id=WP_002210288.1;transl_table=11
NC_004088.1	RefSeq	gene	1792418	1792609	.	-	.	ID=gene1683;Name=Y_RS08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08440
NC_004088.1	Protein Homology	CDS	1792418	1792609	.	-	0	ID=cds1619;Parent=gene1683;Dbxref=Genbank:WP_002216055.1;Name=WP_002216055.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216055.1;transl_table=11
NC_004088.1	RefSeq	gene	1792850	1793305	.	+	.	ID=gene1684;Name=Y_RS08445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08445;old_locus_tag=y1623
NC_004088.1	Protein Homology	CDS	1792850	1793305	.	+	0	ID=cds1620;Parent=gene1684;Dbxref=Genbank:WP_002210287.1;Name=WP_002210287.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210287.1;transl_table=11
NC_004088.1	RefSeq	gene	1793613	1794107	.	+	.	ID=gene1685;Name=Y_RS08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08450;old_locus_tag=y1624
NC_004088.1	Protein Homology	CDS	1793613	1794107	.	+	0	ID=cds1621;Parent=gene1685;Dbxref=Genbank:WP_002210286.1;Name=WP_002210286.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210286.1;transl_table=11
NC_004088.1	RefSeq	gene	1794272	1794928	.	+	.	ID=gene1686;Name=Y_RS08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08455;old_locus_tag=y1625
NC_004088.1	Protein Homology	CDS	1794272	1794928	.	+	0	ID=cds1622;Parent=gene1686;Dbxref=Genbank:WP_002210285.1;Name=WP_002210285.1;gbkey=CDS;product=phosphatase;protein_id=WP_002210285.1;transl_table=11
NC_004088.1	RefSeq	gene	1795220	1797052	.	+	.	ID=gene1687;Name=Y_RS08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08460;old_locus_tag=y1626
NC_004088.1	Protein Homology	CDS	1795220	1797052	.	+	0	ID=cds1623;Parent=gene1687;Dbxref=Genbank:WP_002227880.1;Name=WP_002227880.1;gbkey=CDS;product=citrate transporter;protein_id=WP_002227880.1;transl_table=11
NC_004088.1	RefSeq	gene	1797157	1797348	.	+	.	ID=gene1688;Name=Y_RS08465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08465
NC_004088.1	Protein Homology	CDS	1797157	1797348	.	+	0	ID=cds1624;Parent=gene1688;Dbxref=Genbank:WP_002216053.1;Name=WP_002216053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216053.1;transl_table=11
NC_004088.1	RefSeq	gene	1797395	1797988	.	-	.	ID=gene1689;Name=Y_RS08470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08470;old_locus_tag=y1627
NC_004088.1	Protein Homology	CDS	1797395	1797988	.	-	0	ID=cds1625;Parent=gene1689;Dbxref=Genbank:WP_002210283.1;Name=WP_002210283.1;gbkey=CDS;product=5'-nucleotidase;protein_id=WP_002210283.1;transl_table=11
NC_004088.1	RefSeq	gene	1798139	1799353	.	-	.	ID=gene1690;Name=Y_RS08475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08475;old_locus_tag=y1628
NC_004088.1	Protein Homology	CDS	1798139	1799353	.	-	0	ID=cds1626;Parent=gene1690;Dbxref=Genbank:WP_002210282.1;Name=WP_002210282.1;Note=broad specificity%3B family IV%3B in Corynebacterium glutamicum this protein can use glutamate%2C 2-aminobutyrate%2C and aspartate as amino donors and pyruvate as the acceptor;gbkey=CDS;product=aminotransferase;protein_id=WP_002210282.1;transl_table=11
NC_004088.1	RefSeq	gene	1799486	1799758	.	+	.	ID=gene1691;Name=Y_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08480
NC_004088.1	Protein Homology	CDS	1799486	1799758	.	+	0	ID=cds1627;Parent=gene1691;Dbxref=Genbank:WP_002217838.1;Name=WP_002217838.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217838.1;transl_table=11
NC_004088.1	RefSeq	gene	1800209	1801141	.	+	.	ID=gene1692;Name=Y_RS08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08485;old_locus_tag=y1629
NC_004088.1	Protein Homology	CDS	1800209	1801141	.	+	0	ID=cds1628;Parent=gene1692;Dbxref=Genbank:WP_002210280.1;Name=WP_002210280.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002210280.1;transl_table=11
NC_004088.1	RefSeq	gene	1801819	1802319	.	+	.	ID=gene1693;Name=Y_RS08490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08490;old_locus_tag=y1630
NC_004088.1	Protein Homology	CDS	1801819	1802319	.	+	0	ID=cds1629;Parent=gene1693;Dbxref=Genbank:WP_002210279.1;Name=WP_002210279.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_002210279.1;transl_table=11
NC_004088.1	RefSeq	gene	1802421	1803098	.	+	.	ID=gene1694;Name=Y_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08495;old_locus_tag=y1631
NC_004088.1	Protein Homology	CDS	1802421	1803098	.	+	0	ID=cds1630;Parent=gene1694;Dbxref=Genbank:WP_002210278.1;Name=WP_002210278.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit B;protein_id=WP_002210278.1;transl_table=11
NC_004088.1	RefSeq	gene	1803239	1805035	.	+	.	ID=gene1695;Name=Y_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08500;old_locus_tag=y1632
NC_004088.1	Protein Homology	CDS	1803239	1805035	.	+	0	ID=cds1631;Parent=gene1695;Dbxref=Genbank:WP_002210277.1;Name=WP_002210277.1;Note=NuoCD%3B NDH-1 shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B subunits NuoCD%2C E%2C F%2C and G constitute the peripheral sector of the complex%3B in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms;gbkey=CDS;product=NADH-quinone oxidoreductase subunit C/D;protein_id=WP_002210277.1;transl_table=11
NC_004088.1	RefSeq	gene	1805038	1805601	.	+	.	ID=gene1696;Name=Y_RS08505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08505;old_locus_tag=y1633
NC_004088.1	Protein Homology	CDS	1805038	1805601	.	+	0	ID=cds1632;Parent=gene1696;Dbxref=Genbank:WP_002228514.1;Name=WP_002228514.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH dehydrogenase subunit E;protein_id=WP_002228514.1;transl_table=11
NC_004088.1	RefSeq	gene	1805598	1806983	.	+	.	ID=gene1697;Name=Y_RS08510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08510;old_locus_tag=y1634
NC_004088.1	Protein Homology	CDS	1805598	1806983	.	+	0	ID=cds1633;Parent=gene1697;Dbxref=Genbank:WP_002210276.1;Name=WP_002210276.1;Note=part of NADH-ubiquinone oxidoreductase complex I%3B shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase;gbkey=CDS;product=NADH dehydrogenase subunit F;protein_id=WP_002210276.1;transl_table=11
NC_004088.1	RefSeq	gene	1807070	1809814	.	+	.	ID=gene1698;Name=Y_RS08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08515;old_locus_tag=y1635
NC_004088.1	Protein Homology	CDS	1807070	1809814	.	+	0	ID=cds1634;Parent=gene1698;Dbxref=Genbank:WP_002210275.1;Name=WP_002210275.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit G;protein_id=WP_002210275.1;transl_table=11
NC_004088.1	RefSeq	gene	1809811	1810788	.	+	.	ID=gene1699;Name=Y_RS08520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08520;old_locus_tag=y1636
NC_004088.1	Protein Homology	CDS	1809811	1810788	.	+	0	ID=cds1635;Parent=gene1699;Dbxref=Genbank:WP_002210274.1;Name=WP_002210274.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit H;protein_id=WP_002210274.1;transl_table=11
NC_004088.1	RefSeq	gene	1810803	1811345	.	+	.	ID=gene1700;Name=Y_RS08525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08525;old_locus_tag=y1637
NC_004088.1	Protein Homology	CDS	1810803	1811345	.	+	0	ID=cds1636;Parent=gene1700;Dbxref=Genbank:WP_002210273.1;Name=WP_002210273.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit I;protein_id=WP_002210273.1;transl_table=11
NC_004088.1	RefSeq	gene	1811358	1811903	.	+	.	ID=gene1701;Name=Y_RS08530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08530;old_locus_tag=y1638
NC_004088.1	Protein Homology	CDS	1811358	1811903	.	+	0	ID=cds1637;Parent=gene1701;Dbxref=Genbank:WP_002210272.1;Name=WP_002210272.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit J;protein_id=WP_002210272.1;transl_table=11
NC_004088.1	RefSeq	gene	1811900	1812202	.	+	.	ID=gene1702;Name=Y_RS08535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08535;old_locus_tag=y1639
NC_004088.1	Protein Homology	CDS	1811900	1812202	.	+	0	ID=cds1638;Parent=gene1702;Dbxref=Genbank:WP_002210271.1;Name=WP_002210271.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit K;protein_id=WP_002210271.1;transl_table=11
NC_004088.1	RefSeq	gene	1812199	1814043	.	+	.	ID=gene1703;Name=Y_RS08540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08540;old_locus_tag=y1640
NC_004088.1	Protein Homology	CDS	1812199	1814043	.	+	0	ID=cds1639;Parent=gene1703;Dbxref=Genbank:WP_002210270.1;Name=WP_002210270.1;Note=Catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit L;protein_id=WP_002210270.1;transl_table=11
NC_004088.1	RefSeq	gene	1814083	1815615	.	+	.	ID=gene1704;Name=Y_RS08545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08545;old_locus_tag=y1641
NC_004088.1	Protein Homology	CDS	1814083	1815615	.	+	0	ID=cds1640;Parent=gene1704;Dbxref=Genbank:WP_002210269.1;Name=WP_002210269.1;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit M;protein_id=WP_002210269.1;transl_table=11
NC_004088.1	RefSeq	gene	1815622	1817085	.	+	.	ID=gene1705;Name=Y_RS08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08550;old_locus_tag=y1642
NC_004088.1	Protein Homology	CDS	1815622	1817085	.	+	0	ID=cds1641;Parent=gene1705;Dbxref=Genbank:WP_002210268.1;Name=WP_002210268.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit N;protein_id=WP_002210268.1;transl_table=11
NC_004088.1	RefSeq	gene	1817321	1818511	.	+	.	ID=gene1706;Name=Y_RS08555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08555;old_locus_tag=y1643
NC_004088.1	Protein Homology	CDS	1817321	1818511	.	+	0	ID=cds1642;Parent=gene1706;Dbxref=Genbank:WP_002210267.1;Name=WP_002210267.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210267.1;transl_table=11
NC_004088.1	RefSeq	gene	1818856	1819149	.	-	.	ID=gene1707;Name=Y_RS08560;end_range=1819149,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS08560;partial=true;pseudo=true
NC_004088.1	Protein Homology	CDS	1818856	1819149	.	-	0	ID=cds1643;Parent=gene1707;end_range=1819149,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	1819141	1819866	.	+	.	ID=gene1708;Name=Y_RS08565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08565;old_locus_tag=y1645
NC_004088.1	Protein Homology	CDS	1819141	1819866	.	+	0	ID=cds1644;Parent=gene1708;Dbxref=Genbank:WP_002223581.1;Name=WP_002223581.1;Note=Involved in the nonphosphorylative%2C ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate;gbkey=CDS;product=gluconate 5-dehydrogenase;protein_id=WP_002223581.1;transl_table=11
NC_004088.1	RefSeq	gene	1819915	1820451	.	+	.	ID=gene1709;Name=idnK;gbkey=Gene;gene=idnK;gene_biotype=protein_coding;locus_tag=Y_RS08570;old_locus_tag=y1646
NC_004088.1	Protein Homology	CDS	1819915	1820451	.	+	0	ID=cds1645;Parent=gene1709;Dbxref=Genbank:WP_002210265.1;Name=WP_002210265.1;gbkey=CDS;gene=idnK;product=D-gluconate kinase;protein_id=WP_002210265.1;transl_table=11
NC_004088.1	RefSeq	gene	1820529	1820714	.	+	.	ID=gene1710;Name=Y_RS21770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21770;old_locus_tag=y1647
NC_004088.1	Protein Homology	CDS	1820529	1820714	.	+	0	ID=cds1646;Parent=gene1710;Dbxref=Genbank:WP_011055449.1;Name=WP_011055449.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011055449.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1820779	1820956	.	+	.	ID=id220;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1821509	1822792	.	-	.	ID=gene1711;Name=Y_RS08580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08580;old_locus_tag=y1649
NC_004088.1	Protein Homology	CDS	1821509	1822792	.	-	0	ID=cds1647;Parent=gene1711;Dbxref=Genbank:WP_002210262.1;Name=WP_002210262.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002210262.1;transl_table=11
NC_004088.1	RefSeq	gene	1823261	1824253	.	+	.	ID=gene1712;Name=Y_RS08585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08585;old_locus_tag=y1650
NC_004088.1	Protein Homology	CDS	1823261	1824253	.	+	0	ID=cds1648;Parent=gene1712;Dbxref=Genbank:WP_002210260.1;Name=WP_002210260.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002210260.1;transl_table=11
NC_004088.1	RefSeq	gene	1824578	1824700	.	+	.	ID=gene1713;Name=Y_RS08590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08590
NC_004088.1	Protein Homology	CDS	1824578	1824700	.	+	0	ID=cds1649;Parent=gene1713;Dbxref=Genbank:WP_002210258.1;Name=WP_002210258.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210258.1;transl_table=11
NC_004088.1	RefSeq	gene	1824719	1825669	.	+	.	ID=gene1714;Name=Y_RS08595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08595;old_locus_tag=y1651
NC_004088.1	Protein Homology	CDS	1824719	1825669	.	+	0	ID=cds1650;Parent=gene1714;Dbxref=Genbank:WP_002210257.1;Name=WP_002210257.1;gbkey=CDS;product=dihydrofolate reductase;protein_id=WP_002210257.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1825690	1825862	.	+	.	ID=id221;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1826215	1827531	.	+	.	ID=gene1715;Name=Y_RS08600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08600;old_locus_tag=y1652
NC_004088.1	Protein Homology	CDS	1826215	1827531	.	+	0	ID=cds1651;Parent=gene1715;Dbxref=Genbank:WP_002215889.1;Name=WP_002215889.1;gbkey=CDS;product=2-ketogluconate transporter;protein_id=WP_002215889.1;transl_table=11
NC_004088.1	RefSeq	gene	1827561	1828076	.	+	.	ID=gene1716;Name=Y_RS08605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08605;old_locus_tag=y1653
NC_004088.1	Protein Homology	CDS	1827561	1828076	.	+	0	ID=cds1652;Parent=gene1716;Dbxref=Genbank:WP_002210255.1;Name=WP_002210255.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210255.1;transl_table=11
NC_004088.1	RefSeq	gene	1828086	1829957	.	+	.	ID=gene1717;Name=Y_RS08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08610;old_locus_tag=y1654
NC_004088.1	Protein Homology	CDS	1828086	1829957	.	+	0	ID=cds1653;Parent=gene1717;Dbxref=Genbank:WP_002210254.1;Name=WP_002210254.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate;gbkey=CDS;product=phosphogluconate dehydratase;protein_id=WP_002210254.1;transl_table=11
NC_004088.1	RefSeq	gene	1830023	1830235	.	+	.	ID=gene1718;Name=Y_RS08615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08615
NC_004088.1	Protein Homology	CDS	1830023	1830235	.	+	0	ID=cds1654;Parent=gene1718;Dbxref=Genbank:WP_002215888.1;Name=WP_002215888.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215888.1;transl_table=11
NC_004088.1	RefSeq	gene	1830176	1830319	.	-	.	ID=gene1719;Name=Y_RS08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08620
NC_004088.1	Protein Homology	CDS	1830176	1830319	.	-	0	ID=cds1655;Parent=gene1719;Dbxref=Genbank:WP_002210253.1;Name=WP_002210253.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210253.1;transl_table=11
NC_004088.1	RefSeq	gene	1830884	1831192	.	+	.	ID=gene1720;Name=Y_RS08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08625;old_locus_tag=y1657
NC_004088.1	Protein Homology	CDS	1830884	1831192	.	+	0	ID=cds1656;Parent=gene1720;Dbxref=Genbank:WP_002210251.1;Name=WP_002210251.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210251.1;transl_table=11
NC_004088.1	RefSeq	gene	1831747	1832391	.	+	.	ID=gene1721;Name=Y_RS08630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08630;old_locus_tag=y1658
NC_004088.1	Protein Homology	CDS	1831747	1832391	.	+	0	ID=cds1657;Parent=gene1721;Dbxref=Genbank:WP_002210249.1;Name=WP_002210249.1;gbkey=CDS;product=protein RhiA;protein_id=WP_002210249.1;transl_table=11
NC_004088.1	RefSeq	gene	1832919	1834286	.	+	.	ID=gene1722;Name=Y_RS08635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08635;old_locus_tag=y1659
NC_004088.1	Protein Homology	CDS	1832919	1834286	.	+	0	ID=cds1658;Parent=gene1722;Dbxref=Genbank:WP_002210248.1;Name=WP_002210248.1;gbkey=CDS;product=menaquinone-specific isochorismate synthase;protein_id=WP_002210248.1;transl_table=11
NC_004088.1	RefSeq	gene	1834514	1836217	.	+	.	ID=gene1723;Name=Y_RS08640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08640;old_locus_tag=y1660
NC_004088.1	Protein Homology	CDS	1834514	1836217	.	+	0	ID=cds1659;Parent=gene1723;Dbxref=Genbank:WP_002210247.1;Name=WP_002210247.1;gbkey=CDS;product=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase;protein_id=WP_002210247.1;transl_table=11
NC_004088.1	RefSeq	gene	1836214	1837032	.	+	.	ID=gene1724;Name=Y_RS08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08645;old_locus_tag=y1661
NC_004088.1	Protein Homology	CDS	1836214	1837032	.	+	0	ID=cds1660;Parent=gene1724;Dbxref=Genbank:WP_002210246.1;Name=WP_002210246.1;gbkey=CDS;product=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase;protein_id=WP_002210246.1;transl_table=11
NC_004088.1	RefSeq	gene	1837046	1837903	.	+	.	ID=gene1725;Name=Y_RS08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08650;old_locus_tag=y1662
NC_004088.1	Protein Homology	CDS	1837046	1837903	.	+	0	ID=cds1661;Parent=gene1725;Dbxref=Genbank:WP_002210245.1;Name=WP_002210245.1;Note=catalyzes the formation of 1%2C4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA;gbkey=CDS;product=naphthoate synthase;protein_id=WP_002210245.1;transl_table=11
NC_004088.1	RefSeq	gene	1837903	1838874	.	+	.	ID=gene1726;Name=Y_RS08655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08655;old_locus_tag=y1663
NC_004088.1	Protein Homology	CDS	1837903	1838874	.	+	0	ID=cds1662;Parent=gene1726;Dbxref=Genbank:WP_002210244.1;Name=WP_002210244.1;Note=catalyzes the dehydration of 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate;gbkey=CDS;product=o-succinylbenzoate synthase;protein_id=WP_002210244.1;transl_table=11
NC_004088.1	RefSeq	gene	1838862	1840277	.	+	.	ID=gene1727;Name=Y_RS08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08660;old_locus_tag=y1664
NC_004088.1	Protein Homology	CDS	1838862	1840277	.	+	0	ID=cds1663;Parent=gene1727;Dbxref=Genbank:WP_002210243.1;Name=WP_002210243.1;gbkey=CDS;product=O-succinylbenzoic acid--CoA ligase;protein_id=WP_002210243.1;transl_table=11
NC_004088.1	RefSeq	gene	1840343	1841302	.	+	.	ID=gene1728;Name=Y_RS08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08665;old_locus_tag=y1665
NC_004088.1	Protein Homology	CDS	1840343	1841302	.	+	0	ID=cds1664;Parent=gene1728;Dbxref=Genbank:WP_002210242.1;Name=WP_002210242.1;gbkey=CDS;product=glycosyl hydrolase;protein_id=WP_002210242.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1841347	1841520	.	+	.	ID=id222;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1841684	1841944	.	-	.	ID=gene1729;Name=Y_RS08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08670;old_locus_tag=y1667
NC_004088.1	Protein Homology	CDS	1841684	1841944	.	-	0	ID=cds1665;Parent=gene1729;Dbxref=Genbank:WP_002210240.1;Name=WP_002210240.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210240.1;transl_table=11
NC_004088.1	RefSeq	gene	1842232	1843242	.	+	.	ID=gene1730;Name=Y_RS08675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08675;old_locus_tag=y1668
NC_004088.1	Protein Homology	CDS	1842232	1843242	.	+	0	ID=cds1666;Parent=gene1730;Dbxref=Genbank:WP_002210239.1;Name=WP_002210239.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase F;protein_id=WP_002210239.1;transl_table=11
NC_004088.1	RefSeq	gene	1843424	1843507	.	-	.	ID=gene1731;Name=Y_RS08680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08680;old_locus_tag=y1669
NC_004088.1	Protein Homology	CDS	1843424	1843507	.	-	0	ID=cds1667;Parent=gene1731;Dbxref=Genbank:WP_015683819.1;Name=WP_015683819.1;gbkey=CDS;product=SAM-dependent methyltransferase;protein_id=WP_015683819.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1843759	1843933	.	+	.	ID=id223;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	1844036	1845993	.	+	.	ID=id224;gbkey=repeat_region
NC_004088.1	RefSeq	region	1844038	1845991	.	-	.	ID=id225;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1844104	1844883	.	-	.	ID=gene1732;Name=Y_RS08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08685;old_locus_tag=y1670
NC_004088.1	Protein Homology	CDS	1844104	1844883	.	-	0	ID=cds1668;Parent=gene1732;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	1844883	1845905	.	-	.	ID=gene1733;Name=Y_RS08690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08690;old_locus_tag=y1671
NC_004088.1	Protein Homology	CDS	1844883	1845905	.	-	0	ID=cds1669;Parent=gene1733;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	1845964	1847262	.	+	.	ID=gene1734;Name=Y_RS08695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08695;old_locus_tag=y1672
NC_004088.1	Protein Homology	CDS	1845964	1847262	.	+	0	ID=cds1670;Parent=gene1734;Dbxref=Genbank:WP_002210238.1;Name=WP_002210238.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_002210238.1;transl_table=11
NC_004088.1	RefSeq	gene	1847502	1848224	.	-	.	ID=gene1735;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=Y_RS08700;old_locus_tag=y1673
NC_004088.1	Protein Homology	CDS	1847502	1848224	.	-	0	ID=cds1671;Parent=gene1735;Dbxref=Genbank:WP_002210237.1;Name=WP_002210237.1;Note=similar to ATP-binding component of ABC transporters;gbkey=CDS;gene=glnQ;product=glutamine ABC transporter ATP-binding protein;protein_id=WP_002210237.1;transl_table=11
NC_004088.1	RefSeq	gene	1848221	1848877	.	-	.	ID=gene1736;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=Y_RS08705;old_locus_tag=y1674
NC_004088.1	Protein Homology	CDS	1848221	1848877	.	-	0	ID=cds1672;Parent=gene1736;Dbxref=Genbank:WP_002210236.1;Name=WP_002210236.1;Note=similar to permease component of ABC transporters%3B mutations impair ability of Escherichia coli to transport and utilize glutamine;gbkey=CDS;gene=glnP;product=glutamine ABC transporter permease;protein_id=WP_002210236.1;transl_table=11
NC_004088.1	RefSeq	gene	1848912	1849655	.	-	.	ID=gene1737;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=Y_RS08710;old_locus_tag=y1675
NC_004088.1	Protein Homology	CDS	1848912	1849655	.	-	0	ID=cds1673;Parent=gene1737;Dbxref=Genbank:WP_002210235.1;Name=WP_002210235.1;Note=similar to periplasmic-binding component of ABC transporters;gbkey=CDS;gene=glnH;product=glutamine ABC transporter substrate-binding protein;protein_id=WP_002210235.1;transl_table=11
NC_004088.1	RefSeq	gene	1850225	1851352	.	-	.	ID=gene1738;Name=Y_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08715;old_locus_tag=y1676
NC_004088.1	Protein Homology	CDS	1850225	1851352	.	-	0	ID=cds1674;Parent=gene1738;Dbxref=Genbank:WP_002210234.1;Name=WP_002210234.1;gbkey=CDS;product=transporter;protein_id=WP_002210234.1;transl_table=11
NC_004088.1	RefSeq	gene	1851672	1852175	.	-	.	ID=gene1739;Name=Y_RS08720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08720;old_locus_tag=y1677
NC_004088.1	Protein Homology	CDS	1851672	1852175	.	-	0	ID=cds1675;Parent=gene1739;Dbxref=Genbank:WP_002210233.1;Name=WP_002210233.1;Note=binds DNA in a non-sequence-specific manner and is abundant during stationary phase%3B forms a DNA-protein crystal that protects DNA from damage%3B required for normal starvation response and long-term stationary viability%3B forms a homododecameric complex and sequesters iron which provides protection against oxidative damage;gbkey=CDS;product=DNA protection during starvation protein;protein_id=WP_002210233.1;transl_table=11
NC_004088.1	RefSeq	gene	1852432	1853208	.	-	.	ID=gene1740;Name=Y_RS08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08725;old_locus_tag=y1678
NC_004088.1	Protein Homology	CDS	1852432	1853208	.	-	0	ID=cds1676;Parent=gene1740;Dbxref=Genbank:WP_002210232.1;Name=WP_002210232.1;Note=catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate;gbkey=CDS;product=trans-aconitate 2-methyltransferase;protein_id=WP_002210232.1;transl_table=11
NC_004088.1	RefSeq	gene	1853231	1853728	.	-	.	ID=gene1741;Name=Y_RS08730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08730;old_locus_tag=y1679
NC_004088.1	Protein Homology	CDS	1853231	1853728	.	-	0	ID=cds1677;Parent=gene1741;Dbxref=Genbank:WP_002210231.1;Name=WP_002210231.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_002210231.1;transl_table=11
NC_004088.1	RefSeq	gene	1853744	1854631	.	-	.	ID=gene1742;Name=Y_RS08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08735;old_locus_tag=y1680
NC_004088.1	Protein Homology	CDS	1853744	1854631	.	-	0	ID=cds1678;Parent=gene1742;Dbxref=Genbank:WP_002213809.1;Name=WP_002213809.1;gbkey=CDS;product=threonine transporter RhtB;protein_id=WP_002213809.1;transl_table=11
NC_004088.1	RefSeq	gene	1855036	1855560	.	+	.	ID=gene1743;Name=ompX;gbkey=Gene;gene=ompX;gene_biotype=protein_coding;locus_tag=Y_RS08740;old_locus_tag=y1682
NC_004088.1	Protein Homology	CDS	1855036	1855560	.	+	0	ID=cds1679;Parent=gene1743;Dbxref=Genbank:WP_002210229.1;Name=WP_002210229.1;Note=OmpX%3B involved in cell adhesion%3B forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface%3B mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains;gbkey=CDS;gene=ompX;product=outer membrane protein X;protein_id=WP_002210229.1;transl_table=11
NC_004088.1	RefSeq	gene	1855876	1856814	.	+	.	ID=gene1744;Name=Y_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08745;old_locus_tag=y1683
NC_004088.1	Protein Homology	CDS	1855876	1856814	.	+	0	ID=cds1680;Parent=gene1744;Dbxref=Genbank:WP_002210228.1;Name=WP_002210228.1;gbkey=CDS;product=cytochrome C551;protein_id=WP_002210228.1;transl_table=11
NC_004088.1	RefSeq	gene	1857052	1857594	.	+	.	ID=gene1745;Name=Y_RS08750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08750;old_locus_tag=y1684
NC_004088.1	Protein Homology	CDS	1857052	1857594	.	+	0	ID=cds1681;Parent=gene1745;Dbxref=Genbank:WP_002210227.1;Name=WP_002210227.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210227.1;transl_table=11
NC_004088.1	RefSeq	gene	1857790	1858458	.	+	.	ID=gene1746;Name=Y_RS08755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08755;old_locus_tag=y1685
NC_004088.1	Protein Homology	CDS	1857790	1858458	.	+	0	ID=cds1682;Parent=gene1746;Dbxref=Genbank:WP_002210225.1;Name=WP_002210225.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210225.1;transl_table=11
NC_004088.1	RefSeq	gene	1859200	1860267	.	+	.	ID=gene1747;Name=Y_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08760;old_locus_tag=y1686
NC_004088.1	Protein Homology	CDS	1859200	1860267	.	+	0	ID=cds1683;Parent=gene1747;Dbxref=Genbank:WP_002210224.1;Name=WP_002210224.1;gbkey=CDS;product=iditol 2-dehydrogenase;protein_id=WP_002210224.1;transl_table=11
NC_004088.1	RefSeq	gene	1860442	1861359	.	+	.	ID=gene1748;Name=Y_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08765;old_locus_tag=y1687
NC_004088.1	Protein Homology	CDS	1860442	1861359	.	+	0	ID=cds1684;Parent=gene1748;Dbxref=Genbank:WP_002210223.1;Name=WP_002210223.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002210223.1;transl_table=11
NC_004088.1	RefSeq	gene	1861399	1862889	.	+	.	ID=gene1749;Name=Y_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08770;old_locus_tag=y1688
NC_004088.1	Protein Homology	CDS	1861399	1862889	.	+	0	ID=cds1685;Parent=gene1749;Dbxref=Genbank:WP_002210222.1;Name=WP_002210222.1;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=WP_002210222.1;transl_table=11
NC_004088.1	RefSeq	gene	1862886	1863878	.	+	.	ID=gene1750;Name=Y_RS08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08775;old_locus_tag=y1689
NC_004088.1	Protein Homology	CDS	1862886	1863878	.	+	0	ID=cds1686;Parent=gene1750;Dbxref=Genbank:WP_002210221.1;Name=WP_002210221.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002210221.1;transl_table=11
NC_004088.1	RefSeq	gene	1864011	1865015	.	-	.	ID=gene1751;Name=Y_RS08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08780;old_locus_tag=y1690
NC_004088.1	Protein Homology	CDS	1864011	1865015	.	-	0	ID=cds1687;Parent=gene1751;Dbxref=Genbank:WP_002210220.1;Name=WP_002210220.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002210220.1;transl_table=11
NC_004088.1	RefSeq	gene	1865262	1866203	.	-	.	ID=gene1752;Name=Y_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08785;old_locus_tag=y1691
NC_004088.1	Protein Homology	CDS	1865262	1866203	.	-	0	ID=cds1688;Parent=gene1752;Dbxref=Genbank:WP_002210219.1;Name=WP_002210219.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002210219.1;transl_table=11
NC_004088.1	RefSeq	gene	1866306	1867391	.	+	.	ID=gene1753;Name=Y_RS08790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08790;old_locus_tag=y1692
NC_004088.1	Protein Homology	CDS	1866306	1867391	.	+	0	ID=cds1689;Parent=gene1753;Dbxref=Genbank:WP_002224280.1;Name=WP_002224280.1;gbkey=CDS;product=tartrate dehydrogenase;protein_id=WP_002224280.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1867426	1867601	.	+	.	ID=id226;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1867460	1867642	.	+	.	ID=gene1754;Name=Y_RS08795;gbkey=Gene;gene_biotype=other;locus_tag=Y_RS08795
NC_004088.1	RefSeq	gene	1868008	1869654	.	+	.	ID=gene1755;Name=Y_RS08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08800;old_locus_tag=y1693
NC_004088.1	Protein Homology	CDS	1868008	1869654	.	+	0	ID=cds1690;Parent=gene1755;Dbxref=Genbank:WP_002210215.1;Name=WP_002210215.1;Note=member of the betaine%2C carnitine%2C choline transporter (BCCT) family%3B unknown function;gbkey=CDS;product=betaine/carnitine/choline BCCT transporter;protein_id=WP_002210215.1;transl_table=11
NC_004088.1	RefSeq	gene	1869771	1870825	.	+	.	ID=gene1756;Name=Y_RS08805;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS08805;pseudo=true
NC_004088.1	Protein Homology	CDS	1869771	1870825	.	+	0	ID=cds1691;Parent=gene1756;exception=annotated by transcript or proteomic data;gbkey=CDS;product=dioxygenase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	1870921	1871886	.	+	.	ID=gene1757;Name=Y_RS08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08810;old_locus_tag=y1695
NC_004088.1	Protein Homology	CDS	1870921	1871886	.	+	0	ID=cds1692;Parent=gene1757;Dbxref=Genbank:WP_002213817.1;Name=WP_002213817.1;gbkey=CDS;product=dioxygenase subunit beta;protein_id=WP_002213817.1;transl_table=11
NC_004088.1	RefSeq	gene	1872539	1874227	.	+	.	ID=gene1758;Name=Y_RS08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08815;old_locus_tag=y1696
NC_004088.1	Protein Homology	CDS	1872539	1874227	.	+	0	ID=cds1693;Parent=gene1758;Dbxref=Genbank:WP_002210212.1;Name=WP_002210212.1;gbkey=CDS;product=hemolysin secretion/activation protein%2C ShlB/FhaC/HecB family;protein_id=WP_002210212.1;transl_table=11
NC_004088.1	RefSeq	gene	1874383	1881978	.	+	.	ID=gene1759;Name=Y_RS08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08820;old_locus_tag=y1697
NC_004088.1	Protein Homology	CDS	1874383	1881978	.	+	0	ID=cds1694;Parent=gene1759;Dbxref=Genbank:WP_002213819.1;Name=WP_002213819.1;gbkey=CDS;product=hemagglutinin;protein_id=WP_002213819.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1880039	1881369	.	+	.	ID=id227;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1881980	1882489	.	+	.	ID=gene1760;Name=Y_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08825;old_locus_tag=y1698
NC_004088.1	Protein Homology	CDS	1881980	1882489	.	+	0	ID=cds1695;Parent=gene1760;Dbxref=Genbank:WP_002210211.1;Name=WP_002210211.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210211.1;transl_table=11
NC_004088.1	RefSeq	gene	1882734	1882985	.	+	.	ID=gene1761;Name=Y_RS08830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08830;old_locus_tag=y1700
NC_004088.1	Protein Homology	CDS	1882734	1882985	.	+	0	ID=cds1696;Parent=gene1761;Dbxref=Genbank:WP_002213821.1;Name=WP_002213821.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213821.1;transl_table=11
NC_004088.1	RefSeq	gene	1883126	1883473	.	+	.	ID=gene1762;Name=Y_RS08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08835
NC_004088.1	Protein Homology	CDS	1883126	1883473	.	+	0	ID=cds1697;Parent=gene1762;Dbxref=Genbank:WP_016256369.1;Name=WP_016256369.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016256369.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1883596	1885077	.	+	.	ID=id228;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1883649	1885682	.	+	.	ID=gene1763;Name=Y_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08840;old_locus_tag=y1701
NC_004088.1	Protein Homology	CDS	1883649	1885682	.	+	0	ID=cds1698;Parent=gene1763;Dbxref=Genbank:WP_002213825.1;Name=WP_002213825.1;gbkey=CDS;product=hemagglutinin;protein_id=WP_002213825.1;transl_table=11
NC_004088.1	RefSeq	gene	1885692	1885889	.	+	.	ID=gene1764;Name=Y_RS08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08845;old_locus_tag=y1702
NC_004088.1	Protein Homology	CDS	1885692	1885889	.	+	0	ID=cds1699;Parent=gene1764;Dbxref=Genbank:WP_002210208.1;Name=WP_002210208.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210208.1;transl_table=11
NC_004088.1	RefSeq	gene	1886092	1886259	.	+	.	ID=gene1765;Name=Y_RS08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08850
NC_004088.1	Protein Homology	CDS	1886092	1886259	.	+	0	ID=cds1700;Parent=gene1765;Dbxref=Genbank:WP_002213827.1;Name=WP_002213827.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213827.1;transl_table=11
NC_004088.1	RefSeq	gene	1886401	1886805	.	+	.	ID=gene1766;Name=Y_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08855;old_locus_tag=y1703
NC_004088.1	Protein Homology	CDS	1886401	1886805	.	+	0	ID=cds1701;Parent=gene1766;Dbxref=Genbank:WP_002213829.1;Name=WP_002213829.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213829.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1886946	1887196	.	+	.	ID=id229;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1886965	1887357	.	+	.	ID=gene1767;Name=Y_RS08860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08860;old_locus_tag=y1704
NC_004088.1	Protein Homology	CDS	1886965	1887357	.	+	0	ID=cds1702;Parent=gene1767;Dbxref=Genbank:WP_002213832.1;Name=WP_002213832.1;gbkey=CDS;product=adhesin;protein_id=WP_002213832.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1887350	1887518	.	+	.	ID=id230;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1887708	1888160	.	+	.	ID=gene1768;Name=Y_RS08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08865;old_locus_tag=y1705
NC_004088.1	Protein Homology	CDS	1887708	1888160	.	+	0	ID=cds1703;Parent=gene1768;Dbxref=Genbank:WP_002224304.1;Name=WP_002224304.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224304.1;transl_table=11
NC_004088.1	RefSeq	gene	1888425	1889504	.	-	.	ID=gene1769;Name=Y_RS08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08870;old_locus_tag=y1709
NC_004088.1	Protein Homology	CDS	1888425	1889504	.	-	0	ID=cds1704;Parent=gene1769;Dbxref=Genbank:WP_002210202.1;Name=WP_002210202.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002210202.1;transl_table=11
NC_004088.1	RefSeq	gene	1889604	1890992	.	-	.	ID=gene1770;Name=Y_RS08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08875;old_locus_tag=y1710
NC_004088.1	Protein Homology	CDS	1889604	1890992	.	-	0	ID=cds1705;Parent=gene1770;Dbxref=Genbank:WP_002210201.1;Name=WP_002210201.1;Note=capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate;gbkey=CDS;product=phosphomannomutase;protein_id=WP_002210201.1;transl_table=11
NC_004088.1	RefSeq	gene	1891009	1892049	.	-	.	ID=gene1771;Name=Y_RS08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08880;old_locus_tag=y1711
NC_004088.1	Protein Homology	CDS	1891009	1892049	.	-	0	ID=cds1706;Parent=gene1771;Dbxref=Genbank:WP_002210200.1;Name=WP_002210200.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002210200.1;transl_table=11
NC_004088.1	RefSeq	gene	1892321	1893607	.	+	.	ID=gene1772;Name=Y_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08885;old_locus_tag=y1712
NC_004088.1	Protein Homology	CDS	1892321	1893607	.	+	0	ID=cds1707;Parent=gene1772;Dbxref=Genbank:WP_002210199.1;Name=WP_002210199.1;gbkey=CDS;product=solute-binding protein;protein_id=WP_002210199.1;transl_table=11
NC_004088.1	RefSeq	gene	1893716	1894591	.	+	.	ID=gene1773;Name=Y_RS08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08890;old_locus_tag=y1713
NC_004088.1	Protein Homology	CDS	1893716	1894591	.	+	0	ID=cds1708;Parent=gene1773;Dbxref=Genbank:WP_002210198.1;Name=WP_002210198.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002210198.1;transl_table=11
NC_004088.1	RefSeq	gene	1894592	1895416	.	+	.	ID=gene1774;Name=Y_RS08895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08895;old_locus_tag=y1714
NC_004088.1	Protein Homology	CDS	1894592	1895416	.	+	0	ID=cds1709;Parent=gene1774;Dbxref=Genbank:WP_002210197.1;Name=WP_002210197.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002210197.1;transl_table=11
NC_004088.1	RefSeq	gene	1895563	1896618	.	+	.	ID=gene1775;Name=Y_RS08900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08900;old_locus_tag=y1715
NC_004088.1	Protein Homology	CDS	1895563	1896618	.	+	0	ID=cds1710;Parent=gene1775;Dbxref=Genbank:WP_002210196.1;Name=WP_002210196.1;gbkey=CDS;product=glycosidase;protein_id=WP_002210196.1;transl_table=11
NC_004088.1	RefSeq	gene	1896645	1897583	.	+	.	ID=gene1776;Name=Y_RS08905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08905;old_locus_tag=y1716
NC_004088.1	Protein Homology	CDS	1896645	1897583	.	+	0	ID=cds1711;Parent=gene1776;Dbxref=Genbank:WP_002213840.1;Name=WP_002213840.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213840.1;transl_table=11
NC_004088.1	RefSeq	gene	1897706	1898821	.	+	.	ID=gene1777;Name=Y_RS08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08910;old_locus_tag=y1717
NC_004088.1	Protein Homology	CDS	1897706	1898821	.	+	0	ID=cds1712;Parent=gene1777;Dbxref=Genbank:WP_002210194.1;Name=WP_002210194.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210194.1;transl_table=11
NC_004088.1	RefSeq	gene	1898860	1900134	.	+	.	ID=gene1778;Name=Y_RS08915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08915;old_locus_tag=y1718
NC_004088.1	Protein Homology	CDS	1898860	1900134	.	+	0	ID=cds1713;Parent=gene1778;Dbxref=Genbank:WP_002210193.1;Name=WP_002210193.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210193.1;transl_table=11
NC_004088.1	RefSeq	gene	1900747	1901991	.	-	.	ID=gene1779;Name=Y_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08920;old_locus_tag=y1720
NC_004088.1	Protein Homology	CDS	1900747	1901991	.	-	0	ID=cds1714;Parent=gene1779;Dbxref=Genbank:WP_002210192.1;Name=WP_002210192.1;gbkey=CDS;product=miniconductance mechanosensitive channel;protein_id=WP_002210192.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1902329	1902537	.	+	.	ID=id231;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1902896	1903876	.	+	.	ID=gene1780;Name=Y_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08925;old_locus_tag=y1722
NC_004088.1	Protein Homology	CDS	1902896	1903876	.	+	0	ID=cds1715;Parent=gene1780;Dbxref=Genbank:WP_002210191.1;Name=WP_002210191.1;gbkey=CDS;product=subtype I-F CRISPR-associated endonuclease Cas1;protein_id=WP_002210191.1;transl_table=11
NC_004088.1	RefSeq	gene	1903873	1907160	.	+	.	ID=gene1781;Name=Y_RS08930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08930;old_locus_tag=y1723
NC_004088.1	Protein Homology	CDS	1903873	1907160	.	+	0	ID=cds1716;Parent=gene1781;Dbxref=Genbank:WP_002221142.1;Name=WP_002221142.1;gbkey=CDS;product=CRISPR-associated protein Cas3;protein_id=WP_002221142.1;transl_table=11
NC_004088.1	RefSeq	gene	1907569	1908915	.	+	.	ID=gene1782;Name=Y_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08935;old_locus_tag=y1724
NC_004088.1	Protein Homology	CDS	1907569	1908915	.	+	0	ID=cds1717;Parent=gene1782;Dbxref=Genbank:WP_002222491.1;Name=WP_002222491.1;gbkey=CDS;product=CRISPR type I-F system protein Csy1;protein_id=WP_002222491.1;transl_table=11
NC_004088.1	RefSeq	gene	1908912	1909862	.	+	.	ID=gene1783;Name=Y_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08940;old_locus_tag=y1725
NC_004088.1	Protein Homology	CDS	1908912	1909862	.	+	0	ID=cds1718;Parent=gene1783;Dbxref=Genbank:WP_002211868.1;Name=WP_002211868.1;gbkey=CDS;product=CRISPR type I-F system protein Csy2;protein_id=WP_002211868.1;transl_table=11
NC_004088.1	RefSeq	gene	1909880	1910884	.	+	.	ID=gene1784;Name=Y_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08945;old_locus_tag=y1726
NC_004088.1	Protein Homology	CDS	1909880	1910884	.	+	0	ID=cds1719;Parent=gene1784;Dbxref=Genbank:WP_002211867.1;Name=WP_002211867.1;gbkey=CDS;product=CRISPR-associated protein Cas5;protein_id=WP_002211867.1;transl_table=11
NC_004088.1	RefSeq	gene	1910895	1911449	.	+	.	ID=gene1785;Name=Y_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08950;old_locus_tag=y1727
NC_004088.1	Protein Homology	CDS	1910895	1911449	.	+	0	ID=cds1720;Parent=gene1785;Dbxref=Genbank:WP_002211866.1;Name=WP_002211866.1;gbkey=CDS;product=CRISPR-associated protein Csy4;protein_id=WP_002211866.1;transl_table=11
NC_004088.1	RefSeq	gene	1911527	1912546	.	-	.	ID=gene1786;Name=Y_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08955;old_locus_tag=y1728
NC_004088.1	Protein Homology	CDS	1911527	1912546	.	-	0	ID=cds1721;Parent=gene1786;Dbxref=Genbank:WP_002211865.1;Name=WP_002211865.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002211865.1;transl_table=11
NC_004088.1	RefSeq	gene	1912557	1913060	.	-	.	ID=gene1787;Name=Y_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08960;old_locus_tag=y1729
NC_004088.1	Protein Homology	CDS	1912557	1913060	.	-	0	ID=cds1722;Parent=gene1787;Dbxref=Genbank:WP_002211864.1;Name=WP_002211864.1;gbkey=CDS;product=aldehyde-activating protein;protein_id=WP_002211864.1;transl_table=11
NC_004088.1	RefSeq	gene	1913107	1914465	.	-	.	ID=gene1788;Name=Y_RS08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08965;old_locus_tag=y1730
NC_004088.1	Protein Homology	CDS	1913107	1914465	.	-	0	ID=cds1723;Parent=gene1788;Dbxref=Genbank:WP_002211863.1;Name=WP_002211863.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002211863.1;transl_table=11
NC_004088.1	RefSeq	gene	1914589	1914798	.	+	.	ID=gene1789;Name=Y_RS08970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08970
NC_004088.1	Protein Homology	CDS	1914589	1914798	.	+	0	ID=cds1724;Parent=gene1789;Dbxref=Genbank:WP_002216551.1;Name=WP_002216551.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216551.1;transl_table=11
NC_004088.1	RefSeq	gene	1914913	1915839	.	+	.	ID=gene1790;Name=Y_RS08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08975;old_locus_tag=y1731
NC_004088.1	Protein Homology	CDS	1914913	1915839	.	+	0	ID=cds1725;Parent=gene1790;Dbxref=Genbank:WP_002211861.1;Name=WP_002211861.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002211861.1;transl_table=11
NC_004088.1	RefSeq	gene	1916326	1917063	.	+	.	ID=gene1791;Name=Y_RS08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08980;old_locus_tag=y1732
NC_004088.1	Protein Homology	CDS	1916326	1917063	.	+	0	ID=cds1726;Parent=gene1791;Dbxref=Genbank:WP_002211859.1;Name=WP_002211859.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_002211859.1;transl_table=11
NC_004088.1	RefSeq	gene	1917056	1917700	.	-	.	ID=gene1792;Name=Y_RS08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08985;old_locus_tag=y1733
NC_004088.1	Protein Homology	CDS	1917056	1917700	.	-	0	ID=cds1727;Parent=gene1792;Dbxref=Genbank:WP_002211858.1;Name=WP_002211858.1;gbkey=CDS;product=acyl-homoserine-lactone synthase;protein_id=WP_002211858.1;transl_table=11
NC_004088.1	RefSeq	gene	1918131	1918808	.	+	.	ID=gene1793;Name=Y_RS08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08990;old_locus_tag=y1734
NC_004088.1	Protein Homology	CDS	1918131	1918808	.	+	0	ID=cds1728;Parent=gene1793;Dbxref=Genbank:WP_002211857.1;Name=WP_002211857.1;gbkey=CDS;product=transporter;protein_id=WP_002211857.1;transl_table=11
NC_004088.1	RefSeq	gene	1918845	1919006	.	+	.	ID=gene1794;Name=Y_RS08995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS08995;old_locus_tag=y1735
NC_004088.1	Protein Homology	CDS	1918845	1919006	.	+	0	ID=cds1729;Parent=gene1794;Dbxref=Genbank:WP_002216894.1;Name=WP_002216894.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216894.1;transl_table=11
NC_004088.1	RefSeq	gene	1919336	1919500	.	+	.	ID=gene1795;Name=Y_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09000
NC_004088.1	Protein Homology	CDS	1919336	1919500	.	+	0	ID=cds1730;Parent=gene1795;Dbxref=Genbank:WP_002211856.1;Name=WP_002211856.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211856.1;transl_table=11
NC_004088.1	RefSeq	gene	1919687	1919815	.	+	.	ID=gene1796;Name=Y_RS09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09005
NC_004088.1	Protein Homology	CDS	1919687	1919815	.	+	0	ID=cds1731;Parent=gene1796;Dbxref=Genbank:WP_002211855.1;Name=WP_002211855.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211855.1;transl_table=11
NC_004088.1	RefSeq	gene	1919859	1920926	.	+	.	ID=gene1797;Name=Y_RS09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09010;old_locus_tag=y1738
NC_004088.1	Protein Homology	CDS	1919859	1920926	.	+	0	ID=cds1732;Parent=gene1797;Dbxref=Genbank:WP_002211854.1;Name=WP_002211854.1;gbkey=CDS;product=sulfurtransferase;protein_id=WP_002211854.1;transl_table=11
NC_004088.1	RefSeq	gene	1921075	1922133	.	+	.	ID=gene1798;Name=tqsA;gbkey=Gene;gene=tqsA;gene_biotype=protein_coding;gene_synonym=ydgG;locus_tag=Y_RS09015;old_locus_tag=y1739
NC_004088.1	Protein Homology	CDS	1921075	1922133	.	+	0	ID=cds1733;Parent=gene1798;Dbxref=Genbank:WP_002211853.1;Name=WP_002211853.1;Note=transport of quorum-sensing signal%3B mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes;gbkey=CDS;gene=tqsA;product=pheromone autoinducer 2 transporter;protein_id=WP_002211853.1;transl_table=11
NC_004088.1	RefSeq	gene	1922705	1923319	.	-	.	ID=gene1799;Name=Y_RS09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09020;old_locus_tag=y1741
NC_004088.1	Protein Homology	CDS	1922705	1923319	.	-	0	ID=cds1734;Parent=gene1799;Dbxref=Genbank:WP_002211851.1;Name=WP_002211851.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_002211851.1;transl_table=11
NC_004088.1	RefSeq	gene	1923586	1924701	.	-	.	ID=gene1800;Name=solA;gbkey=Gene;gene=solA;gene_biotype=protein_coding;locus_tag=Y_RS09025;old_locus_tag=y1742
NC_004088.1	Protein Homology	CDS	1923586	1924701	.	-	0	ID=cds1735;Parent=gene1800;Dbxref=Genbank:WP_002224296.1;Name=WP_002224296.1;Note=catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde%3B FAD-binding%3B can also catalyze the demethylation of other N-methyl amino acids;gbkey=CDS;gene=solA;product=N-methyl-L-tryptophan oxidase;protein_id=WP_002224296.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1924989	1926312	.	+	.	ID=id232;gbkey=repeat_region
NC_004088.1	RefSeq	region	1924991	1926305	.	+	.	ID=id233;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1925062	1926270	.	+	.	ID=gene1801;Name=Y_RS09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09030;old_locus_tag=y1743
NC_004088.1	Protein Homology	CDS	1925062	1926270	.	+	0	ID=cds1736;Parent=gene1801;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	1926547	1926834	.	-	.	ID=gene1802;Name=Y_RS09035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09035;old_locus_tag=y1744
NC_004088.1	Protein Homology	CDS	1926547	1926834	.	-	0	ID=cds1737;Parent=gene1802;Dbxref=Genbank:WP_002213107.1;Name=WP_002213107.1;gbkey=CDS;product=antibiotic biosynthesis monooxygenase;protein_id=WP_002213107.1;transl_table=11
NC_004088.1	RefSeq	gene	1927069	1928115	.	+	.	ID=gene1803;Name=Y_RS09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09040;old_locus_tag=y1746
NC_004088.1	Protein Homology	CDS	1927069	1928115	.	+	0	ID=cds1738;Parent=gene1803;Dbxref=Genbank:WP_002213109.1;Name=WP_002213109.1;gbkey=CDS;product=dihydroorotase;protein_id=WP_002213109.1;transl_table=11
NC_004088.1	RefSeq	gene	1928428	1928673	.	+	.	ID=gene1804;Name=Y_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09045;old_locus_tag=y1747
NC_004088.1	Protein Homology	CDS	1928428	1928673	.	+	0	ID=cds1739;Parent=gene1804;Dbxref=Genbank:WP_002224294.1;Name=WP_002224294.1;gbkey=CDS;product=DNA damage-inducible protein I;protein_id=WP_002224294.1;transl_table=11
NC_004088.1	RefSeq	gene	1928872	1929000	.	-	.	ID=gene1805;Name=Y_RS09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09050
NC_004088.1	Protein Homology	CDS	1928872	1929000	.	-	0	ID=cds1740;Parent=gene1805;Dbxref=Genbank:WP_002358565.1;Name=WP_002358565.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002358565.1;transl_table=11
NC_004088.1	RefSeq	gene	1929179	1929475	.	+	.	ID=gene1806;Name=bssS;gbkey=Gene;gene=bssS;gene_biotype=protein_coding;gene_synonym=yceP;locus_tag=Y_RS09055
NC_004088.1	Protein Homology	CDS	1929179	1929475	.	+	0	ID=cds1741;Parent=gene1806;Dbxref=Genbank:WP_002217041.1;Name=WP_002217041.1;Note=BssS%3B regulator of biofilm through signal secretion%3B disruption of this gene in Escherichia coli led to effects on biofilm formation%2C alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing;gbkey=CDS;gene=bssS;product=biofilm formation regulatory protein BssS;protein_id=WP_002217041.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1929402	1930724	.	+	.	ID=id234;gbkey=repeat_region;gene=bssS
NC_004088.1	RefSeq	region	1929403	1930717	.	-	.	ID=id235;Note=insertion element;gbkey=mobile_element;gene=bssS
NC_004088.1	RefSeq	gene	1929438	1930646	.	-	.	ID=gene1807;Name=Y_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09060;old_locus_tag=y1748
NC_004088.1	Protein Homology	CDS	1929438	1930646	.	-	0	ID=cds1742;Parent=gene1807;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	1930742	1934383	.	-	.	ID=gene1808;Name=Y_RS09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09065;old_locus_tag=y1749
NC_004088.1	Protein Homology	CDS	1930742	1934383	.	-	0	ID=cds1743;Parent=gene1808;Dbxref=Genbank:WP_016257293.1;Name=WP_016257293.1;gbkey=CDS;product=ribonuclease E;protein_id=WP_016257293.1;transl_table=11
NC_004088.1	RefSeq	gene	1934967	1935929	.	+	.	ID=gene1809;Name=Y_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09070;old_locus_tag=y1750
NC_004088.1	Protein Homology	CDS	1934967	1935929	.	+	0	ID=cds1744;Parent=gene1809;Dbxref=Genbank:WP_002210927.1;Name=WP_002210927.1;Note=catalyzes the transformation of uracil to pseudouracil at nucleotides U955%2C U2504%2C and U2580 in 23S rRNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase C;protein_id=WP_002210927.1;transl_table=11
NC_004088.1	RefSeq	gene	1936052	1936648	.	-	.	ID=gene1810;Name=Y_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09075;old_locus_tag=y1751
NC_004088.1	Protein Homology	CDS	1936052	1936648	.	-	0	ID=cds1745;Parent=gene1810;Dbxref=Genbank:WP_002210928.1;Name=WP_002210928.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;product=septum formation inhibitor Maf;protein_id=WP_002210928.1;transl_table=11
NC_004088.1	RefSeq	gene	1936790	1937314	.	+	.	ID=gene1811;Name=Y_RS09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09080;old_locus_tag=y1752
NC_004088.1	Protein Homology	CDS	1936790	1937314	.	+	0	ID=cds1746;Parent=gene1811;Dbxref=Genbank:WP_002210930.1;Name=WP_002210930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210930.1;transl_table=11
NC_004088.1	RefSeq	gene	1937327	1937494	.	+	.	ID=gene1812;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=Y_RS09085;old_locus_tag=y1753
NC_004088.1	Protein Homology	CDS	1937327	1937494	.	+	0	ID=cds1747;Parent=gene1812;Dbxref=Genbank:WP_002210931.1;Name=WP_002210931.1;Note=some L32 proteins have zinc finger motifs consisting of CXXC while others do not;gbkey=CDS;gene=rpmF;product=50S ribosomal protein L32;protein_id=WP_002210931.1;transl_table=11
NC_004088.1	RefSeq	gene	1937558	1938562	.	+	.	ID=gene1813;Name=Y_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09090;old_locus_tag=y1755
NC_004088.1	Protein Homology	CDS	1937558	1938562	.	+	0	ID=cds1748;Parent=gene1813;Dbxref=Genbank:WP_032465670.1;Name=WP_032465670.1;gbkey=CDS;product=phosphate acyltransferase;protein_id=WP_032465670.1;transl_table=11
NC_004088.1	RefSeq	gene	1938569	1939519	.	+	.	ID=gene1814;Name=Y_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09095;old_locus_tag=y1756
NC_004088.1	Protein Homology	CDS	1938569	1939519	.	+	0	ID=cds1749;Parent=gene1814;Dbxref=Genbank:WP_002210933.1;Name=WP_002210933.1;Note=FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs;gbkey=CDS;product=3-oxoacyl-ACP synthase III;protein_id=WP_002210933.1;transl_table=11
NC_004088.1	RefSeq	gene	1939557	1940486	.	+	.	ID=gene1815;Name=Y_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09100;old_locus_tag=y1757
NC_004088.1	Protein Homology	CDS	1939557	1940486	.	+	0	ID=cds1750;Parent=gene1815;Dbxref=Genbank:WP_002210934.1;Name=WP_002210934.1;gbkey=CDS;product=malonyl CoA-ACP transacylase;protein_id=WP_002210934.1;transl_table=11
NC_004088.1	RefSeq	gene	1940500	1941234	.	+	.	ID=gene1816;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=Y_RS09105;old_locus_tag=y1758
NC_004088.1	Protein Homology	CDS	1940500	1941234	.	+	0	ID=cds1751;Parent=gene1816;Dbxref=Genbank:WP_002210935.1;Name=WP_002210935.1;Note=catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis;gbkey=CDS;gene=fabG;product=3-ketoacyl-ACP reductase;protein_id=WP_002210935.1;transl_table=11
NC_004088.1	RefSeq	gene	1941388	1941624	.	+	.	ID=gene1817;Name=Y_RS09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09110;old_locus_tag=y1759
NC_004088.1	Protein Homology	CDS	1941388	1941624	.	+	0	ID=cds1752;Parent=gene1817;Dbxref=Genbank:WP_002220787.1;Name=WP_002220787.1;Note=carries the fatty acid chain in fatty acid biosynthesis;gbkey=CDS;product=acyl carrier protein;protein_id=WP_002220787.1;transl_table=11
NC_004088.1	RefSeq	gene	1941755	1942960	.	+	.	ID=gene1818;Name=Y_RS09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09115;old_locus_tag=y1760
NC_004088.1	Protein Homology	CDS	1941755	1942960	.	+	0	ID=cds1753;Parent=gene1818;Dbxref=Genbank:WP_002354075.1;Name=WP_002354075.1;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;product=3-oxoacyl-ACP synthase;protein_id=WP_002354075.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1943010	1943730	.	+	.	ID=id236;gbkey=repeat_region
NC_004088.1	RefSeq	region	1943015	1943724	.	+	.	ID=id237;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1943160	1943618	.	+	.	ID=gene1819;Name=Y_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09120;old_locus_tag=y1761
NC_004088.1	Protein Homology	CDS	1943160	1943618	.	+	0	ID=cds1754;Parent=gene1819;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	1944034	1944840	.	+	.	ID=gene1820;Name=Y_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09125;old_locus_tag=y1762
NC_004088.1	Protein Homology	CDS	1944034	1944840	.	+	0	ID=cds1755;Parent=gene1820;Dbxref=Genbank:WP_002213080.1;Name=WP_002213080.1;Note=catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate;gbkey=CDS;product=4-amino-4-deoxychorismate lyase;protein_id=WP_002213080.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1944873	1945046	.	+	.	ID=id238;gbkey=repeat_region
NC_004088.1	RefSeq	gene	1945129	1946154	.	+	.	ID=gene1821;Name=Y_RS09130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09130;old_locus_tag=y1763
NC_004088.1	Protein Homology	CDS	1945129	1946154	.	+	0	ID=cds1756;Parent=gene1821;Dbxref=Genbank:WP_002217396.1;Name=WP_002217396.1;gbkey=CDS;product=aminodeoxychorismate lyase;protein_id=WP_002217396.1;transl_table=11
NC_004088.1	RefSeq	gene	1946144	1946782	.	+	.	ID=gene1822;Name=Y_RS09135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09135;old_locus_tag=y1764
NC_004088.1	Protein Homology	CDS	1946144	1946782	.	+	0	ID=cds1757;Parent=gene1822;Dbxref=Genbank:WP_002213082.1;Name=WP_002213082.1;gbkey=CDS;product=thymidylate kinase;protein_id=WP_002213082.1;transl_table=11
NC_004088.1	RefSeq	gene	1946782	1947804	.	+	.	ID=gene1823;Name=Y_RS09140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09140;old_locus_tag=y1765
NC_004088.1	Protein Homology	CDS	1946782	1947804	.	+	0	ID=cds1758;Parent=gene1823;Dbxref=Genbank:WP_002213083.1;Name=WP_002213083.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA;gbkey=CDS;product=DNA polymerase III subunit delta';protein_id=WP_002213083.1;transl_table=11
NC_004088.1	RefSeq	gene	1947819	1948628	.	+	.	ID=gene1824;Name=Y_RS09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09145;old_locus_tag=y1766
NC_004088.1	Protein Homology	CDS	1947819	1948628	.	+	0	ID=cds1759;Parent=gene1824;Dbxref=Genbank:WP_002213084.1;Name=WP_002213084.1;gbkey=CDS;product=DNAse;protein_id=WP_002213084.1;transl_table=11
NC_004088.1	RefSeq	gene	1948935	1950368	.	+	.	ID=gene1825;Name=Y_RS09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09150;old_locus_tag=y1767
NC_004088.1	Protein Homology	CDS	1948935	1950368	.	+	0	ID=cds1760;Parent=gene1825;Dbxref=Genbank:WP_002213085.1;Name=WP_002213085.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS glucose transporter subunit IIBC;protein_id=WP_002213085.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1950406	1951130	.	+	.	ID=id239;gbkey=repeat_region
NC_004088.1	RefSeq	region	1950413	1951122	.	+	.	ID=id240;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1950558	1951016	.	+	.	ID=gene1826;Name=Y_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09155;old_locus_tag=y1768
NC_004088.1	Protein Homology	CDS	1950558	1951016	.	+	0	ID=cds1761;Parent=gene1826;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	1951459	1952277	.	+	.	ID=gene1827;Name=Y_RS09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09160;old_locus_tag=y1769
NC_004088.1	Protein Homology	CDS	1951459	1952277	.	+	0	ID=cds1762;Parent=gene1827;Dbxref=Genbank:WP_002215853.1;Name=WP_002215853.1;gbkey=CDS;product=shikimate 5-dehydrogenase;protein_id=WP_002215853.1;transl_table=11
NC_004088.1	RefSeq	gene	1952451	1952804	.	+	.	ID=gene1828;Name=Y_RS09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09165;old_locus_tag=y1770
NC_004088.1	Protein Homology	CDS	1952451	1952804	.	+	0	ID=cds1763;Parent=gene1828;Dbxref=Genbank:WP_002213087.1;Name=WP_002213087.1;gbkey=CDS;product=purine nucleoside phosphoramidase;protein_id=WP_002213087.1;transl_table=11
NC_004088.1	RefSeq	gene	1952839	1953228	.	+	.	ID=gene1829;Name=Y_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09170;old_locus_tag=y1771
NC_004088.1	Protein Homology	CDS	1952839	1953228	.	+	0	ID=cds1764;Parent=gene1829;Dbxref=Genbank:WP_002213088.1;Name=WP_002213088.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002213088.1;transl_table=11
NC_004088.1	RefSeq	gene	1953269	1953844	.	+	.	ID=gene1830;Name=Y_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09175;old_locus_tag=y1772
NC_004088.1	Protein Homology	CDS	1953269	1953844	.	+	0	ID=cds1765;Parent=gene1830;Dbxref=Genbank:WP_002213089.1;Name=WP_002213089.1;gbkey=CDS;product=penicillin-binding protein activator LpoB;protein_id=WP_002213089.1;transl_table=11
NC_004088.1	RefSeq	gene	1953825	1954691	.	+	.	ID=gene1831;Name=Y_RS09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09180;old_locus_tag=y1773
NC_004088.1	Protein Homology	CDS	1953825	1954691	.	+	0	ID=cds1766;Parent=gene1831;Dbxref=Genbank:WP_002213090.1;Name=WP_002213090.1;gbkey=CDS;product=thiamine kinase;protein_id=WP_002213090.1;transl_table=11
NC_004088.1	RefSeq	gene	1954774	1955793	.	+	.	ID=gene1832;Name=Y_RS09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09185;old_locus_tag=y1775
NC_004088.1	Protein Homology	CDS	1954774	1955793	.	+	0	ID=cds1767;Parent=gene1832;Dbxref=Genbank:WP_002215854.1;Name=WP_002215854.1;Note=hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides;gbkey=CDS;product=beta-hexosaminidase;protein_id=WP_002215854.1;transl_table=11
NC_004088.1	RefSeq	gene	1955921	1956463	.	+	.	ID=gene1833;Name=Y_RS09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09190;old_locus_tag=y1776
NC_004088.1	Protein Homology	CDS	1955921	1956463	.	+	0	ID=cds1768;Parent=gene1833;Dbxref=Genbank:WP_002213095.1;Name=WP_002213095.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213095.1;transl_table=11
NC_004088.1	RefSeq	gene	1956838	1958142	.	+	.	ID=gene1834;Name=Y_RS09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09195;old_locus_tag=y1777
NC_004088.1	Protein Homology	CDS	1956838	1958142	.	+	0	ID=cds1769;Parent=gene1834;Dbxref=Genbank:WP_002213097.1;Name=WP_002213097.1;gbkey=CDS;product=NADH dehydrogenase;protein_id=WP_002213097.1;transl_table=11
NC_004088.1	RefSeq	gene	1958884	1959249	.	+	.	ID=gene1835;Name=Y_RS09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09200
NC_004088.1	Protein Homology	CDS	1958884	1959249	.	+	0	ID=cds1770;Parent=gene1835;Dbxref=Genbank:WP_002213099.1;Name=WP_002213099.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213099.1;transl_table=11
NC_004088.1	RefSeq	gene	1959257	1959670	.	+	.	ID=gene1836;Name=Y_RS09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09205;old_locus_tag=y1780
NC_004088.1	Protein Homology	CDS	1959257	1959670	.	+	0	ID=cds1771;Parent=gene1836;Dbxref=Genbank:WP_002213101.1;Name=WP_002213101.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213101.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	1959693	1961010	.	+	.	ID=id241;gbkey=repeat_region
NC_004088.1	RefSeq	region	1959695	1961009	.	+	.	ID=id242;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	1959766	1960974	.	+	.	ID=gene1837;Name=Y_RS09210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09210;old_locus_tag=y1781
NC_004088.1	Protein Homology	CDS	1959766	1960974	.	+	0	ID=cds1772;Parent=gene1837;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	1961304	1961843	.	+	.	ID=gene1838;Name=Y_RS09215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09215;old_locus_tag=y1782
NC_004088.1	Protein Homology	CDS	1961304	1961843	.	+	0	ID=cds1773;Parent=gene1838;Dbxref=Genbank:WP_002210925.1;Name=WP_002210925.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210925.1;transl_table=11
NC_004088.1	RefSeq	gene	1962082	1965528	.	-	.	ID=gene1839;Name=Y_RS09220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09220;old_locus_tag=y1784
NC_004088.1	Protein Homology	CDS	1962082	1965528	.	-	0	ID=cds1774;Parent=gene1839;Dbxref=Genbank:WP_002210924.1;Name=WP_002210924.1;gbkey=CDS;product=transcription-repair coupling factor;protein_id=WP_002210924.1;transl_table=11
NC_004088.1	RefSeq	gene	1965798	1967000	.	+	.	ID=gene1840;Name=Y_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09225;old_locus_tag=y1785
NC_004088.1	Protein Homology	CDS	1965798	1967000	.	+	0	ID=cds1775;Parent=gene1840;Dbxref=Genbank:WP_002222341.1;Name=WP_002222341.1;Note=part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane;gbkey=CDS;product=transporter;protein_id=WP_002222341.1;transl_table=11
NC_004088.1	RefSeq	gene	1966993	1967697	.	+	.	ID=gene1841;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=Y_RS09230;old_locus_tag=y1786
NC_004088.1	Protein Homology	CDS	1966993	1967697	.	+	0	ID=cds1776;Parent=gene1841;Dbxref=Genbank:WP_002210923.1;Name=WP_002210923.1;Note=outer membrane specific%3B part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins%2C from the inner membrane to the periplasmic chaperone;gbkey=CDS;gene=lolD;product=lipoprotein-releasing system ATP-binding protein LolD;protein_id=WP_002210923.1;transl_table=11
NC_004088.1	RefSeq	gene	1967697	1968944	.	+	.	ID=gene1842;Name=Y_RS09235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09235;old_locus_tag=y1787
NC_004088.1	Protein Homology	CDS	1967697	1968944	.	+	0	ID=cds1777;Parent=gene1842;Dbxref=Genbank:WP_002210922.1;Name=WP_002210922.1;Note=part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane;gbkey=CDS;product=transporter;protein_id=WP_002210922.1;transl_table=11
NC_004088.1	RefSeq	gene	1968963	1969733	.	+	.	ID=gene1843;Name=Y_RS09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09240;old_locus_tag=y1788
NC_004088.1	Protein Homology	CDS	1968963	1969733	.	+	0	ID=cds1778;Parent=gene1843;Dbxref=Genbank:WP_002216175.1;Name=WP_002216175.1;Note=catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine;gbkey=CDS;product=N-acetyl-D-glucosamine kinase;protein_id=WP_002216175.1;transl_table=11
NC_004088.1	RefSeq	gene	1969927	1970763	.	+	.	ID=gene1844;Name=Y_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09245;old_locus_tag=y1790
NC_004088.1	Protein Homology	CDS	1969927	1970763	.	+	0	ID=cds1779;Parent=gene1844;Dbxref=Genbank:WP_002210921.1;Name=WP_002210921.1;Note=Modulates the activities of several enzymes which are inactive in their acetylated form;gbkey=CDS;product=NAD-dependent deacetylase;protein_id=WP_002210921.1;transl_table=11
NC_004088.1	RefSeq	gene	1971093	1972328	.	+	.	ID=gene1845;Name=Y_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09250;old_locus_tag=y1791
NC_004088.1	Protein Homology	CDS	1971093	1972328	.	+	0	ID=cds1780;Parent=gene1845;Dbxref=Genbank:WP_002210920.1;Name=WP_002210920.1;gbkey=CDS;product=peptidase T;protein_id=WP_002210920.1;transl_table=11
NC_004088.1	RefSeq	gene	1972561	1973682	.	-	.	ID=gene1846;Name=Y_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09255;old_locus_tag=y1792
NC_004088.1	Protein Homology	CDS	1972561	1973682	.	-	0	ID=cds1781;Parent=gene1846;Dbxref=Genbank:WP_002210919.1;Name=WP_002210919.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210919.1;transl_table=11
NC_004088.1	RefSeq	gene	1973766	1975220	.	-	.	ID=gene1847;Name=Y_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09260;old_locus_tag=y1793
NC_004088.1	Protein Homology	CDS	1973766	1975220	.	-	0	ID=cds1782;Parent=gene1847;Dbxref=Genbank:WP_002210918.1;Name=WP_002210918.1;gbkey=CDS;product=sensor protein PhoQ;protein_id=WP_002210918.1;transl_table=11
NC_004088.1	RefSeq	gene	1975226	1975897	.	-	.	ID=gene1848;Name=Y_RS09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09265;old_locus_tag=y1794
NC_004088.1	Protein Homology	CDS	1975226	1975897	.	-	0	ID=cds1783;Parent=gene1848;Dbxref=Genbank:WP_002210917.1;Name=WP_002210917.1;Note=response regulator in two-component regulatory system with PhoQ%3B involved in magnesium starvation and stress;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002210917.1;transl_table=11
NC_004088.1	RefSeq	gene	1976108	1976731	.	-	.	ID=gene1849;Name=Y_RS09270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09270;old_locus_tag=y1795
NC_004088.1	Protein Homology	CDS	1976108	1976731	.	-	0	ID=cds1784;Parent=gene1849;Dbxref=Genbank:WP_002210916.1;Name=WP_002210916.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002210916.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	1976790	1976808	.	-	.	ID=id243;Dbxref=CollecTF:EXPSITE_00000cd0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y1795;gbkey=protein_bind
NC_004088.1	RefSeq	gene	1976919	1978289	.	-	.	ID=gene1850;Name=Y_RS09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09280;old_locus_tag=y1797
NC_004088.1	Protein Homology	CDS	1976919	1978289	.	-	0	ID=cds1785;Parent=gene1850;Dbxref=Genbank:WP_002210915.1;Name=WP_002210915.1;Note=Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide;gbkey=CDS;product=adenylosuccinate lyase;protein_id=WP_002210915.1;transl_table=11
NC_004088.1	RefSeq	gene	1978350	1978976	.	-	.	ID=gene1851;Name=Y_RS09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09285;old_locus_tag=y1798
NC_004088.1	Protein Homology	CDS	1978350	1978976	.	-	0	ID=cds1786;Parent=gene1851;Dbxref=Genbank:WP_002210914.1;Name=WP_002210914.1;Note=HflD%3B UPF0274%3B in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein%3B in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis;gbkey=CDS;product=High frequency lysogenization protein HflD homolog;protein_id=WP_002210914.1;transl_table=11
NC_004088.1	RefSeq	gene	1979034	1980149	.	-	.	ID=gene1852;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=Y_RS09290;old_locus_tag=y1799
NC_004088.1	Protein Homology	CDS	1979034	1980149	.	-	0	ID=cds1787;Parent=gene1852;Dbxref=Genbank:WP_002210913.1;Name=WP_002210913.1;Note=catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs;gbkey=CDS;gene=mnmA;product=tRNA-specific 2-thiouridylase MnmA;protein_id=WP_002210913.1;transl_table=11
NC_004088.1	RefSeq	gene	1980336	1980782	.	-	.	ID=gene1853;Name=Y_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09295;old_locus_tag=y1800
NC_004088.1	Protein Homology	CDS	1980336	1980782	.	-	0	ID=cds1788;Parent=gene1853;Dbxref=Genbank:WP_002210912.1;Name=WP_002210912.1;gbkey=CDS;product=phosphatase;protein_id=WP_002210912.1;transl_table=11
NC_004088.1	RefSeq	gene	1980775	1981401	.	-	.	ID=gene1854;Name=Y_RS09300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09300;old_locus_tag=y1801
NC_004088.1	Protein Homology	CDS	1980775	1981401	.	-	0	ID=cds1789;Parent=gene1854;Dbxref=Genbank:WP_002218214.1;Name=WP_002218214.1;Note=catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase E;protein_id=WP_002218214.1;transl_table=11
NC_004088.1	RefSeq	gene	1981532	1982785	.	+	.	ID=gene1855;Name=Y_RS09305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09305;old_locus_tag=y1802
NC_004088.1	Protein Homology	CDS	1981532	1982785	.	+	0	ID=cds1790;Parent=gene1855;Dbxref=Genbank:WP_002210910.1;Name=WP_002210910.1;Note=Converts isocitrate to alpha ketoglutarate;gbkey=CDS;product=isocitrate dehydrogenase;protein_id=WP_002210910.1;transl_table=11
NC_004088.1	RefSeq	gene	1982931	1983974	.	-	.	ID=gene1856;Name=Y_RS09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09310;old_locus_tag=y1803
NC_004088.1	Protein Homology	CDS	1982931	1983974	.	-	0	ID=cds1791;Parent=gene1856;Dbxref=Genbank:WP_002210909.1;Name=WP_002210909.1;gbkey=CDS;product=sucrose operon repressor;protein_id=WP_002210909.1;transl_table=11
NC_004088.1	RefSeq	gene	1984250	1984510	.	-	.	ID=gene1857;Name=Y_RS09315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09315;old_locus_tag=y1804
NC_004088.1	Protein Homology	CDS	1984250	1984510	.	-	0	ID=cds1792;Parent=gene1857;Dbxref=Genbank:WP_002210908.1;Name=WP_002210908.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210908.1;transl_table=11
NC_004088.1	RefSeq	gene	1984630	1986210	.	-	.	ID=gene1858;Name=Y_RS09320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09320;old_locus_tag=y1805
NC_004088.1	Protein Homology	CDS	1984630	1986210	.	-	0	ID=cds1793;Parent=gene1858;Dbxref=Genbank:WP_002210907.1;Name=WP_002210907.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_002210907.1;transl_table=11
NC_004088.1	RefSeq	gene	1987130	1987987	.	-	.	ID=gene1859;Name=Y_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09325;old_locus_tag=y1806
NC_004088.1	Protein Homology	CDS	1987130	1987987	.	-	0	ID=cds1794;Parent=gene1859;Dbxref=Genbank:WP_002210906.1;Name=WP_002210906.1;gbkey=CDS;product=quinone oxidoreductase;protein_id=WP_002210906.1;transl_table=11
NC_004088.1	RefSeq	gene	1988147	1988530	.	+	.	ID=gene1860;Name=Y_RS09330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09330
NC_004088.1	Protein Homology	CDS	1988147	1988530	.	+	0	ID=cds1795;Parent=gene1860;Dbxref=Genbank:WP_002227977.1;Name=WP_002227977.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002227977.1;transl_table=11
NC_004088.1	RefSeq	gene	1988588	1988761	.	+	.	ID=gene1861;Name=Y_RS09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09335;old_locus_tag=y1808
NC_004088.1	Protein Homology	CDS	1988588	1988761	.	+	0	ID=cds1796;Parent=gene1861;Dbxref=Genbank:WP_002210904.1;Name=WP_002210904.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210904.1;transl_table=11
NC_004088.1	RefSeq	gene	1989062	1990387	.	+	.	ID=gene1862;Name=Y_RS09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09340;old_locus_tag=y1810
NC_004088.1	Protein Homology	CDS	1989062	1990387	.	+	0	ID=cds1797;Parent=gene1862;Dbxref=Genbank:WP_002210903.1;Name=WP_002210903.1;gbkey=CDS;product=phosphoanhydride phosphorylase;protein_id=WP_002210903.1;transl_table=11
NC_004088.1	RefSeq	gene	1990689	1990892	.	-	.	ID=gene1863;Name=Y_RS09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09345;old_locus_tag=y1811
NC_004088.1	Protein Homology	CDS	1990689	1990892	.	-	0	ID=cds1798;Parent=gene1863;Dbxref=Genbank:WP_002210902.1;Name=WP_002210902.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210902.1;transl_table=11
NC_004088.1	RefSeq	gene	1991195	1992094	.	-	.	ID=gene1864;Name=Y_RS09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09350;old_locus_tag=y1812
NC_004088.1	Protein Homology	CDS	1991195	1992094	.	-	0	ID=cds1799;Parent=gene1864;Dbxref=Genbank:WP_002210901.1;Name=WP_002210901.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210901.1;transl_table=11
NC_004088.1	RefSeq	gene	1992186	1992635	.	-	.	ID=gene1865;Name=Y_RS09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09355;old_locus_tag=y1813
NC_004088.1	Protein Homology	CDS	1992186	1992635	.	-	0	ID=cds1800;Parent=gene1865;Dbxref=Genbank:WP_002210900.1;Name=WP_002210900.1;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_002210900.1;transl_table=11
NC_004088.1	RefSeq	gene	1993141	1993674	.	-	.	ID=gene1866;Name=Y_RS09360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09360;old_locus_tag=y1815
NC_004088.1	Protein Homology	CDS	1993141	1993674	.	-	0	ID=cds1801;Parent=gene1866;Dbxref=Genbank:WP_002214045.1;Name=WP_002214045.1;gbkey=CDS;product=membrane protein;protein_id=WP_002214045.1;transl_table=11
NC_004088.1	RefSeq	gene	1993957	1994967	.	-	.	ID=gene1867;Name=Y_RS09365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09365;old_locus_tag=y1816
NC_004088.1	Protein Homology	CDS	1993957	1994967	.	-	0	ID=cds1802;Parent=gene1867;Dbxref=Genbank:WP_002210897.1;Name=WP_002210897.1;gbkey=CDS;product=zinc-binding dehydrogenase;protein_id=WP_002210897.1;transl_table=11
NC_004088.1	RefSeq	gene	1995374	1998556	.	-	.	ID=gene1868;Name=lacZ;gbkey=Gene;gene=lacZ;gene_biotype=protein_coding;locus_tag=Y_RS09370;old_locus_tag=y1817
NC_004088.1	Protein Homology	CDS	1995374	1998556	.	-	0	ID=cds1803;Parent=gene1868;Dbxref=Genbank:WP_002214048.1;Name=WP_002214048.1;Note=forms a homotetramer%3B hydrolyzes lactose disaccharide to galactose and glucose%3B converts lactose to allolactose which is the natural inducer of the lac operon;gbkey=CDS;gene=lacZ;product=beta-galactosidase;protein_id=WP_002214048.1;transl_table=11
NC_004088.1	cmsearch	region	1998916	1999358	.	+	.	ID=id244;Note=cspA;gbkey=misc_feature
NC_004088.1	RefSeq	gene	1999097	1999309	.	+	.	ID=gene1869;Name=Y_RS09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09375;old_locus_tag=y5002
NC_004088.1	Protein Homology	CDS	1999097	1999309	.	+	0	ID=cds1804;Parent=gene1869;Dbxref=Genbank:WP_002210893.1;Name=WP_002210893.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_002210893.1;transl_table=11
NC_004088.1	RefSeq	gene	1999524	1999715	.	+	.	ID=gene1870;Name=Y_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09380;old_locus_tag=y1818
NC_004088.1	Protein Homology	CDS	1999524	1999715	.	+	0	ID=cds1805;Parent=gene1870;Dbxref=Genbank:WP_002210892.1;Name=WP_002210892.1;gbkey=CDS;product=protein DsrB;protein_id=WP_002210892.1;transl_table=11
NC_004088.1	RefSeq	gene	1999898	2001599	.	-	.	ID=gene1871;Name=Y_RS09385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS09385;pseudo=true
NC_004088.1	Protein Homology	CDS	1999898	2001599	.	-	0	ID=cds1806;Parent=gene1871;exception=annotated by transcript or proteomic data;gbkey=CDS;product=chemotaxis protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	2002177	2002195	.	+	.	ID=id245;Dbxref=CollecTF:EXPSITE_00000c50;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y1820;gbkey=protein_bind
NC_004088.1	RefSeq	gene	2002236	2002406	.	+	.	ID=gene1872;Name=Y_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09390
NC_004088.1	Protein Homology	CDS	2002236	2002406	.	+	0	ID=cds1807;Parent=gene1872;Dbxref=Genbank:WP_002214053.1;Name=WP_002214053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214053.1;transl_table=11
NC_004088.1	RefSeq	gene	2002758	2003456	.	+	.	ID=gene1873;Name=Y_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09395;old_locus_tag=y1820
NC_004088.1	Protein Homology	CDS	2002758	2003456	.	+	0	ID=cds1808;Parent=gene1873;Dbxref=Genbank:WP_002210891.1;Name=WP_002210891.1;gbkey=CDS;product=magnesium transporter;protein_id=WP_002210891.1;transl_table=11
NC_004088.1	RefSeq	gene	2003857	2006556	.	+	.	ID=gene1874;Name=Y_RS09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09400;old_locus_tag=y1821
NC_004088.1	Protein Homology	CDS	2003857	2006556	.	+	0	ID=cds1809;Parent=gene1874;Dbxref=Genbank:WP_002210890.1;Name=WP_002210890.1;Note=P-type%3B involved in magnesium transport into the cytoplasm;gbkey=CDS;product=magnesium-translocating P-type ATPase;protein_id=WP_002210890.1;transl_table=11
NC_004088.1	RefSeq	gene	2007736	2008087	.	+	.	ID=gene1875;Name=Y_RS09405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS09405;pseudo=true
NC_004088.1	Protein Homology	CDS	2007736	2008087	.	+	0	ID=cds1810;Parent=gene1875;Note=with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2008091	2008672	.	+	.	ID=gene1876;Name=Y_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09410;old_locus_tag=y1822
NC_004088.1	Protein Homology	CDS	2008091	2008672	.	+	0	ID=cds1811;Parent=gene1876;Dbxref=Genbank:WP_002210889.1;Name=WP_002210889.1;Note=With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002210889.1;transl_table=11
NC_004088.1	RefSeq	gene	2008877	2009764	.	+	.	ID=gene1877;Name=Y_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09415;old_locus_tag=y1823
NC_004088.1	Protein Homology	CDS	2008877	2009764	.	+	0	ID=cds1812;Parent=gene1877;Dbxref=Genbank:WP_002210888.1;Name=WP_002210888.1;Note=With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine;gbkey=CDS;product=flagellar motor protein MotA;protein_id=WP_002210888.1;transl_table=11
NC_004088.1	RefSeq	gene	2009761	2010708	.	+	.	ID=gene1878;Name=Y_RS09420;end_range=2010708,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS09420;partial=true;pseudo=true
NC_004088.1	Protein Homology	CDS	2009761	2010708	.	+	0	ID=cds1813;Parent=gene1878;end_range=2010708,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2011061	2013226	.	+	.	ID=gene1879;Name=Y_RS09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09425;old_locus_tag=y1827
NC_004088.1	Protein Homology	CDS	2011061	2013226	.	+	0	ID=cds1814;Parent=gene1879;Dbxref=Genbank:WP_002210886.1;Name=WP_002210886.1;gbkey=CDS;product=chemotaxis protein CheA;protein_id=WP_002210886.1;transl_table=11
NC_004088.1	RefSeq	gene	2013389	2013886	.	+	.	ID=gene1880;Name=Y_RS09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09430;old_locus_tag=y1828
NC_004088.1	Protein Homology	CDS	2013389	2013886	.	+	0	ID=cds1815;Parent=gene1880;Dbxref=Genbank:WP_002210885.1;Name=WP_002210885.1;gbkey=CDS;product=purine-binding chemotaxis protein;protein_id=WP_002210885.1;transl_table=11
NC_004088.1	RefSeq	gene	2014178	2015413	.	-	.	ID=gene1881;Name=Y_RS09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09435;old_locus_tag=y1829
NC_004088.1	Protein Homology	CDS	2014178	2015413	.	-	0	ID=cds1816;Parent=gene1881;Dbxref=Genbank:WP_002210884.1;Name=WP_002210884.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210884.1;transl_table=11
NC_004088.1	RefSeq	gene	2015426	2015803	.	-	.	ID=gene1882;Name=Y_RS09440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09440;old_locus_tag=y1830
NC_004088.1	Protein Homology	CDS	2015426	2015803	.	-	0	ID=cds1817;Parent=gene1882;Dbxref=Genbank:WP_002210883.1;Name=WP_002210883.1;gbkey=CDS;product=endoribonuclease L-PSP;protein_id=WP_002210883.1;transl_table=11
NC_004088.1	RefSeq	gene	2015800	2016786	.	-	.	ID=gene1883;Name=Y_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09445;old_locus_tag=y1831
NC_004088.1	Protein Homology	CDS	2015800	2016786	.	-	0	ID=cds1818;Parent=gene1883;Dbxref=Genbank:WP_002210882.1;Name=WP_002210882.1;gbkey=CDS;product=xylose isomerase;protein_id=WP_002210882.1;transl_table=11
NC_004088.1	RefSeq	gene	2016976	2017641	.	+	.	ID=gene1884;Name=Y_RS09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09450;old_locus_tag=y1832
NC_004088.1	Protein Homology	CDS	2016976	2017641	.	+	0	ID=cds1819;Parent=gene1884;Dbxref=Genbank:WP_002210881.1;Name=WP_002210881.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002210881.1;transl_table=11
NC_004088.1	RefSeq	gene	2018116	2021923	.	+	.	ID=gene1885;Name=Y_RS09455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS09455;old_locus_tag=y1834;pseudo=true
NC_004088.1	Protein Homology	CDS	2018116	2021923	.	+	0	ID=cds1820;Parent=gene1885;exception=annotated by transcript or proteomic data;gbkey=CDS;product=autotransporter;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	2019793	2021923	.	+	.	ID=id246;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2022451	2025327	.	+	.	ID=gene1886;Name=Y_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09460;old_locus_tag=y1835
NC_004088.1	Protein Homology	CDS	2022451	2025327	.	+	0	ID=cds1821;Parent=gene1886;Dbxref=Genbank:WP_002210878.1;Name=WP_002210878.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210878.1;transl_table=11
NC_004088.1	RefSeq	gene	2025396	2026097	.	+	.	ID=gene1887;Name=Y_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09465;old_locus_tag=y1836
NC_004088.1	Protein Homology	CDS	2025396	2026097	.	+	0	ID=cds1822;Parent=gene1887;Dbxref=Genbank:WP_002214064.1;Name=WP_002214064.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214064.1;transl_table=11
NC_004088.1	RefSeq	gene	2026338	2028011	.	+	.	ID=gene1888;Name=Y_RS09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09470;old_locus_tag=y1837
NC_004088.1	Protein Homology	CDS	2026338	2028011	.	+	0	ID=cds1823;Parent=gene1888;Dbxref=Genbank:WP_002210876.1;Name=WP_002210876.1;Note=serine sensor receptor;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_002210876.1;transl_table=11
NC_004088.1	RefSeq	gene	2028195	2029805	.	+	.	ID=gene1889;Name=Y_RS09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09475;old_locus_tag=y1838
NC_004088.1	Protein Homology	CDS	2028195	2029805	.	+	0	ID=cds1824;Parent=gene1889;Dbxref=Genbank:WP_002220817.1;Name=WP_002220817.1;Note=mediates taxis toward dipeptides;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_002220817.1;transl_table=11
NC_004088.1	RefSeq	gene	2029978	2030850	.	+	.	ID=gene1890;Name=Y_RS09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09480;old_locus_tag=y1839
NC_004088.1	Protein Homology	CDS	2029978	2030850	.	+	0	ID=cds1825;Parent=gene1890;Dbxref=Genbank:WP_002214065.1;Name=WP_002214065.1;Note=methylates the MCP;gbkey=CDS;product=chemotaxis protein CheR;protein_id=WP_002214065.1;transl_table=11
NC_004088.1	RefSeq	gene	2030850	2031899	.	+	.	ID=gene1891;Name=Y_RS09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09485;old_locus_tag=y1841
NC_004088.1	Protein Homology	CDS	2030850	2031899	.	+	0	ID=cds1826;Parent=gene1891;Dbxref=Genbank:WP_002210874.1;Name=WP_002210874.1;Note=regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins;gbkey=CDS;product=two-component system protein-glutamate methylesterase response regulator;protein_id=WP_002210874.1;transl_table=11
NC_004088.1	RefSeq	gene	2032000	2032389	.	+	.	ID=gene1892;Name=Y_RS09490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09490;old_locus_tag=y1842
NC_004088.1	Protein Homology	CDS	2032000	2032389	.	+	0	ID=cds1827;Parent=gene1892;Dbxref=Genbank:WP_002210873.1;Name=WP_002210873.1;Note=chemotaxis regulator that%2C when phosphorylated%2C interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble;gbkey=CDS;product=chemotaxis protein CheY;protein_id=WP_002210873.1;transl_table=11
NC_004088.1	RefSeq	gene	2032399	2033043	.	+	.	ID=gene1893;Name=Y_RS09495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09495;old_locus_tag=y1843
NC_004088.1	Protein Homology	CDS	2032399	2033043	.	+	0	ID=cds1828;Parent=gene1893;Dbxref=Genbank:WP_002210872.1;Name=WP_002210872.1;Note=cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation;gbkey=CDS;product=protein phosphatase CheZ;protein_id=WP_002210872.1;transl_table=11
NC_004088.1	RefSeq	gene	2033363	2033482	.	-	.	ID=gene1894;Name=Y_RS09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09500;old_locus_tag=y1844
NC_004088.1	Protein Homology	CDS	2033363	2033482	.	-	0	ID=cds1829;Parent=gene1894;Dbxref=Genbank:WP_002210871.1;Name=WP_002210871.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210871.1;transl_table=11
NC_004088.1	RefSeq	gene	2033614	2034378	.	+	.	ID=gene1895;Name=Y_RS09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09505;old_locus_tag=y1845
NC_004088.1	Protein Homology	CDS	2033614	2034378	.	+	0	ID=cds1830;Parent=gene1895;Dbxref=Genbank:WP_002210870.1;Name=WP_002210870.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_002210870.1;transl_table=11
NC_004088.1	RefSeq	gene	2034852	2036945	.	+	.	ID=gene1896;Name=Y_RS09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09510;old_locus_tag=y1846
NC_004088.1	Protein Homology	CDS	2034852	2036945	.	+	0	ID=cds1831;Parent=gene1896;Dbxref=Genbank:WP_002232679.1;Name=WP_002232679.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002232679.1;transl_table=11
NC_004088.1	RefSeq	gene	2036932	2037366	.	+	.	ID=gene1897;Name=Y_RS09515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09515;old_locus_tag=y1847
NC_004088.1	Protein Homology	CDS	2036932	2037366	.	+	0	ID=cds1832;Parent=gene1897;Dbxref=Genbank:WP_002215939.1;Name=WP_002215939.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215939.1;transl_table=11
NC_004088.1	RefSeq	gene	2037466	2038419	.	+	.	ID=gene1898;Name=Y_RS09520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09520;old_locus_tag=y1848
NC_004088.1	Protein Homology	CDS	2037466	2038419	.	+	0	ID=cds1833;Parent=gene1898;Dbxref=Genbank:WP_002210869.1;Name=WP_002210869.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210869.1;transl_table=11
NC_004088.1	RefSeq	gene	2039038	2040267	.	-	.	ID=gene1899;Name=Y_RS09525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09525;old_locus_tag=y1849
NC_004088.1	Protein Homology	CDS	2039038	2040267	.	-	0	ID=cds1834;Parent=gene1899;Dbxref=Genbank:WP_002210868.1;Name=WP_002210868.1;Note=converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer;gbkey=CDS;product=alanine racemase;protein_id=WP_002210868.1;transl_table=11
NC_004088.1	RefSeq	gene	2040669	2040863	.	-	.	ID=gene1900;Name=Y_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09530;old_locus_tag=y1850
NC_004088.1	Protein Homology	CDS	2040669	2040863	.	-	0	ID=cds1835;Parent=gene1900;Dbxref=Genbank:WP_002210867.1;Name=WP_002210867.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210867.1;transl_table=11
NC_004088.1	RefSeq	gene	2041428	2041676	.	+	.	ID=gene1901;Name=Y_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09535;old_locus_tag=y1851
NC_004088.1	Protein Homology	CDS	2041428	2041676	.	+	0	ID=cds1836;Parent=gene1901;Dbxref=Genbank:WP_002210865.1;Name=WP_002210865.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210865.1;transl_table=11
NC_004088.1	RefSeq	gene	2042069	2043325	.	+	.	ID=gene1902;Name=Y_RS09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09540;old_locus_tag=y1852
NC_004088.1	Protein Homology	CDS	2042069	2043325	.	+	0	ID=cds1837;Parent=gene1902;Dbxref=Genbank:WP_002210864.1;Name=WP_002210864.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002210864.1;transl_table=11
NC_004088.1	RefSeq	gene	2043480	2043713	.	+	.	ID=gene1903;Name=Y_RS09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09545
NC_004088.1	Protein Homology	CDS	2043480	2043713	.	+	0	ID=cds1838;Parent=gene1903;Dbxref=Genbank:WP_002210862.1;Name=WP_002210862.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002210862.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2044211	2046170	.	+	.	ID=id247;gbkey=repeat_region
NC_004088.1	RefSeq	region	2044214	2046167	.	-	.	ID=id248;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2044280	2045059	.	-	.	ID=gene1904;Name=Y_RS09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09550;old_locus_tag=y1853
NC_004088.1	Protein Homology	CDS	2044280	2045059	.	-	0	ID=cds1839;Parent=gene1904;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	2045059	2046081	.	-	.	ID=gene1905;Name=Y_RS09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09555;old_locus_tag=y1854
NC_004088.1	Protein Homology	CDS	2045059	2046081	.	-	0	ID=cds1840;Parent=gene1905;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	2046488	2046877	.	+	.	ID=gene1906;Name=Y_RS09560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09560;old_locus_tag=y1855
NC_004088.1	Protein Homology	CDS	2046488	2046877	.	+	0	ID=cds1841;Parent=gene1906;Dbxref=Genbank:WP_002215943.1;Name=WP_002215943.1;gbkey=CDS;product=RNA-binding protein;protein_id=WP_002215943.1;transl_table=11
NC_004088.1	RefSeq	gene	2046987	2047226	.	-	.	ID=gene1907;Name=Y_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09565;old_locus_tag=y1856
NC_004088.1	Protein Homology	CDS	2046987	2047226	.	-	0	ID=cds1842;Parent=gene1907;Dbxref=Genbank:WP_002210859.1;Name=WP_002210859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210859.1;transl_table=11
NC_004088.1	RefSeq	gene	2047434	2048423	.	-	.	ID=gene1908;Name=Y_RS09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09570;old_locus_tag=y1857
NC_004088.1	Protein Homology	CDS	2047434	2048423	.	-	0	ID=cds1843;Parent=gene1908;Dbxref=Genbank:WP_002210858.1;Name=WP_002210858.1;gbkey=CDS;product=spore coat protein U;protein_id=WP_002210858.1;transl_table=11
NC_004088.1	RefSeq	gene	2048629	2051076	.	-	.	ID=gene1909;Name=Y_RS09575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09575;old_locus_tag=y1858
NC_004088.1	Protein Homology	CDS	2048629	2051076	.	-	0	ID=cds1844;Parent=gene1909;Dbxref=Genbank:WP_002210857.1;Name=WP_002210857.1;gbkey=CDS;product=outer membrane usher protein;protein_id=WP_002210857.1;transl_table=11
NC_004088.1	RefSeq	gene	2051247	2051999	.	-	.	ID=gene1910;Name=Y_RS09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09580;old_locus_tag=y1859
NC_004088.1	Protein Homology	CDS	2051247	2051999	.	-	0	ID=cds1845;Parent=gene1910;Dbxref=Genbank:WP_002210856.1;Name=WP_002210856.1;gbkey=CDS;product=molecular chaperone;protein_id=WP_002210856.1;transl_table=11
NC_004088.1	RefSeq	gene	2052030	2052587	.	-	.	ID=gene1911;Name=Y_RS09585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09585;old_locus_tag=y1860
NC_004088.1	Protein Homology	CDS	2052030	2052587	.	-	0	ID=cds1846;Parent=gene1911;Dbxref=Genbank:WP_002216611.1;Name=WP_002216611.1;gbkey=CDS;product=spore coat protein U;protein_id=WP_002216611.1;transl_table=11
NC_004088.1	RefSeq	gene	2052608	2053099	.	-	.	ID=gene1912;Name=Y_RS09590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09590;old_locus_tag=y1861
NC_004088.1	Protein Homology	CDS	2052608	2053099	.	-	0	ID=cds1847;Parent=gene1912;Dbxref=Genbank:WP_002210853.1;Name=WP_002210853.1;gbkey=CDS;product=spore coat protein U;protein_id=WP_002210853.1;transl_table=11
NC_004088.1	RefSeq	gene	2053144	2053698	.	-	.	ID=gene1913;Name=Y_RS09595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09595;old_locus_tag=y1862
NC_004088.1	Protein Homology	CDS	2053144	2053698	.	-	0	ID=cds1848;Parent=gene1913;Dbxref=Genbank:WP_002210852.1;Name=WP_002210852.1;gbkey=CDS;product=spore coat protein U;protein_id=WP_002210852.1;transl_table=11
NC_004088.1	RefSeq	gene	2054177	2056828	.	-	.	ID=gene1914;Name=Y_RS09600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09600;old_locus_tag=y1863
NC_004088.1	Protein Homology	CDS	2054177	2056828	.	-	0	ID=cds1849;Parent=gene1914;Dbxref=Genbank:WP_002216616.1;Name=WP_002216616.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216616.1;transl_table=11
NC_004088.1	RefSeq	gene	2056797	2058044	.	-	.	ID=gene1915;Name=Y_RS09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09605;old_locus_tag=y1864
NC_004088.1	Protein Homology	CDS	2056797	2058044	.	-	0	ID=cds1850;Parent=gene1915;Dbxref=Genbank:WP_002367629.1;Name=WP_002367629.1;gbkey=CDS;product=membrane protein;protein_id=WP_002367629.1;transl_table=11
NC_004088.1	RefSeq	gene	2058276	2058773	.	+	.	ID=gene1916;Name=Y_RS09610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09610;old_locus_tag=y1865
NC_004088.1	Protein Homology	CDS	2058276	2058773	.	+	0	ID=cds1851;Parent=gene1916;Dbxref=Genbank:WP_002210850.1;Name=WP_002210850.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_002210850.1;transl_table=11
NC_004088.1	RefSeq	gene	2058869	2059582	.	+	.	ID=gene1917;Name=Y_RS09615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09615;old_locus_tag=y1866
NC_004088.1	Protein Homology	CDS	2058869	2059582	.	+	0	ID=cds1852;Parent=gene1917;Dbxref=Genbank:WP_002210849.1;Name=WP_002210849.1;Note=affects solute and DNA transport through an unknown mechanism;gbkey=CDS;product=RNA chaperone ProQ;protein_id=WP_002210849.1;transl_table=11
NC_004088.1	RefSeq	gene	2059602	2061674	.	+	.	ID=gene1918;Name=Y_RS09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09620;old_locus_tag=y1867
NC_004088.1	Protein Homology	CDS	2059602	2061674	.	+	0	ID=cds1853;Parent=gene1918;Dbxref=Genbank:WP_002210848.1;Name=WP_002210848.1;Note=Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3;gbkey=CDS;product=carboxyl-terminal processing protease;protein_id=WP_002210848.1;transl_table=11
NC_004088.1	RefSeq	gene	2062129	2063010	.	+	.	ID=gene1919;Name=Y_RS09625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09625;old_locus_tag=y1868
NC_004088.1	Protein Homology	CDS	2062129	2063010	.	+	0	ID=cds1854;Parent=gene1919;Dbxref=Genbank:WP_002210847.1;Name=WP_002210847.1;Note=metalloprotease;gbkey=CDS;product=protease HtpX;protein_id=WP_002210847.1;transl_table=11
NC_004088.1	RefSeq	gene	2063668	2064210	.	+	.	ID=gene1920;Name=Y_RS09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09630;old_locus_tag=y1869
NC_004088.1	Protein Homology	CDS	2063668	2064210	.	+	0	ID=cds1855;Parent=gene1920;Dbxref=Genbank:WP_002210846.1;Name=WP_002210846.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002210846.1;transl_table=11
NC_004088.1	RefSeq	gene	2064456	2065142	.	+	.	ID=gene1921;Name=Y_RS09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09635;old_locus_tag=y1870
NC_004088.1	Protein Homology	CDS	2064456	2065142	.	+	0	ID=cds1856;Parent=gene1921;Dbxref=Genbank:WP_002354110.1;Name=WP_002354110.1;gbkey=CDS;product=fimbrial assembly protein StbE;protein_id=WP_002354110.1;transl_table=11
NC_004088.1	RefSeq	gene	2065224	2067836	.	+	.	ID=gene1922;Name=Y_RS09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09640;old_locus_tag=y1871
NC_004088.1	Protein Homology	CDS	2065224	2067836	.	+	0	ID=cds1857;Parent=gene1922;Dbxref=Genbank:WP_002210844.1;Name=WP_002210844.1;gbkey=CDS;product=outer membrane usher protein;protein_id=WP_002210844.1;transl_table=11
NC_004088.1	RefSeq	gene	2067833	2068996	.	+	.	ID=gene1923;Name=Y_RS09645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09645;old_locus_tag=y1872
NC_004088.1	Protein Homology	CDS	2067833	2068996	.	+	0	ID=cds1858;Parent=gene1923;Dbxref=Genbank:WP_002215120.1;Name=WP_002215120.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002215120.1;transl_table=11
NC_004088.1	RefSeq	gene	2068993	2069796	.	+	.	ID=gene1924;Name=Y_RS09650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09650;old_locus_tag=y1873
NC_004088.1	Protein Homology	CDS	2068993	2069796	.	+	0	ID=cds1859;Parent=gene1924;Dbxref=Genbank:WP_002210843.1;Name=WP_002210843.1;gbkey=CDS;product=molecular chaperone;protein_id=WP_002210843.1;transl_table=11
NC_004088.1	RefSeq	gene	2069850	2071217	.	-	.	ID=gene1925;Name=Y_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09655;old_locus_tag=y1874
NC_004088.1	Protein Homology	CDS	2069850	2071217	.	-	0	ID=cds1860;Parent=gene1925;Dbxref=Genbank:WP_002210842.1;Name=WP_002210842.1;gbkey=CDS;product=multidrug MFS transporter;protein_id=WP_002210842.1;transl_table=11
NC_004088.1	RefSeq	gene	2071544	2072710	.	+	.	ID=gene1926;Name=Y_RS09660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09660;old_locus_tag=y1875
NC_004088.1	Protein Homology	CDS	2071544	2072710	.	+	0	ID=cds1861;Parent=gene1926;Dbxref=Genbank:WP_002210841.1;Name=WP_002210841.1;gbkey=CDS;product=oligogalacturonate lyase;protein_id=WP_002210841.1;transl_table=11
NC_004088.1	RefSeq	gene	2072897	2073688	.	+	.	ID=gene1927;Name=Y_RS09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09665;old_locus_tag=y1876
NC_004088.1	Protein Homology	CDS	2072897	2073688	.	+	0	ID=cds1862;Parent=gene1927;Dbxref=Genbank:WP_002210840.1;Name=WP_002210840.1;Note=regulates the genes involved in 2-keto-3-deoxy gluconate transport and catabolism;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_002210840.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	2074003	2074021	.	+	.	ID=id249;Dbxref=CollecTF:EXPSITE_00000ce0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y1877;gbkey=protein_bind
NC_004088.1	RefSeq	gene	2074073	2074924	.	+	.	ID=gene1928;Name=Y_RS09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09670;old_locus_tag=y1877
NC_004088.1	Protein Homology	CDS	2074073	2074924	.	+	0	ID=cds1863;Parent=gene1928;Dbxref=Genbank:WP_002210839.1;Name=WP_002210839.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_002210839.1;transl_table=11
NC_004088.1	RefSeq	gene	2075139	2076530	.	-	.	ID=gene1929;Name=Y_RS09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09675;old_locus_tag=y1878
NC_004088.1	Protein Homology	CDS	2075139	2076530	.	-	0	ID=cds1864;Parent=gene1929;Dbxref=Genbank:WP_002210838.1;Name=WP_002210838.1;gbkey=CDS;product=L-cystine transporter tcyP;protein_id=WP_002210838.1;transl_table=11
NC_004088.1	RefSeq	gene	2076734	2077282	.	-	.	ID=gene1930;Name=Y_RS09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09680;old_locus_tag=y1879
NC_004088.1	Protein Homology	CDS	2076734	2077282	.	-	0	ID=cds1865;Parent=gene1930;Dbxref=Genbank:WP_002210837.1;Name=WP_002210837.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210837.1;transl_table=11
NC_004088.1	RefSeq	gene	2077762	2078472	.	-	.	ID=gene1931;Name=Y_RS09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09685;old_locus_tag=y1880
NC_004088.1	Protein Homology	CDS	2077762	2078472	.	-	0	ID=cds1866;Parent=gene1931;Dbxref=Genbank:WP_002210836.1;Name=WP_002210836.1;gbkey=CDS;product=porin;protein_id=WP_002210836.1;transl_table=11
NC_004088.1	RefSeq	gene	2078770	2080062	.	-	.	ID=gene1932;Name=Y_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09690;old_locus_tag=y1881
NC_004088.1	Protein Homology	CDS	2078770	2080062	.	-	0	ID=cds1867;Parent=gene1932;Dbxref=Genbank:WP_002210835.1;Name=WP_002210835.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002210835.1;transl_table=11
NC_004088.1	RefSeq	gene	2080078	2081205	.	-	.	ID=gene1933;Name=Y_RS09695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09695;old_locus_tag=y1882
NC_004088.1	Protein Homology	CDS	2080078	2081205	.	-	0	ID=cds1868;Parent=gene1933;Dbxref=Genbank:WP_002210834.1;Name=WP_002210834.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002210834.1;transl_table=11
NC_004088.1	RefSeq	gene	2081219	2082139	.	-	.	ID=gene1934;Name=Y_RS09700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09700;old_locus_tag=y1883
NC_004088.1	Protein Homology	CDS	2081219	2082139	.	-	0	ID=cds1869;Parent=gene1934;Dbxref=Genbank:WP_002210833.1;Name=WP_002210833.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002210833.1;transl_table=11
NC_004088.1	RefSeq	gene	2082132	2083022	.	-	.	ID=gene1935;Name=Y_RS09705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09705;old_locus_tag=y1884
NC_004088.1	Protein Homology	CDS	2082132	2083022	.	-	0	ID=cds1870;Parent=gene1935;Dbxref=Genbank:WP_002210832.1;Name=WP_002210832.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002210832.1;transl_table=11
NC_004088.1	RefSeq	gene	2083063	2084730	.	-	.	ID=gene1936;Name=Y_RS09710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09710;old_locus_tag=y1885
NC_004088.1	Protein Homology	CDS	2083063	2084730	.	-	0	ID=cds1871;Parent=gene1936;Dbxref=Genbank:WP_002210831.1;Name=WP_002210831.1;gbkey=CDS;product=pectate disaccharide-lyase;protein_id=WP_002210831.1;transl_table=11
NC_004088.1	RefSeq	gene	2085066	2085827	.	-	.	ID=gene1937;Name=Y_RS09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09715;old_locus_tag=y1886
NC_004088.1	Protein Homology	CDS	2085066	2085827	.	-	0	ID=cds1872;Parent=gene1937;Dbxref=Genbank:WP_002210830.1;Name=WP_002210830.1;Note=catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate;gbkey=CDS;product=2-deoxy-D-gluconate 3-dehydrogenase;protein_id=WP_002210830.1;transl_table=11
NC_004088.1	RefSeq	gene	2085919	2086755	.	-	.	ID=gene1938;Name=Y_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09720;old_locus_tag=y1887
NC_004088.1	Protein Homology	CDS	2085919	2086755	.	-	0	ID=cds1873;Parent=gene1938;Dbxref=Genbank:WP_002210829.1;Name=WP_002210829.1;Note=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase%3B catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2%2C5-hexodiulosonate;gbkey=CDS;product=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase;protein_id=WP_002210829.1;transl_table=11
NC_004088.1	RefSeq	gene	2087091	2087441	.	+	.	ID=gene1939;Name=Y_RS09725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09725;old_locus_tag=y1888
NC_004088.1	Protein Homology	CDS	2087091	2087441	.	+	0	ID=cds1874;Parent=gene1939;Dbxref=Genbank:WP_002210828.1;Name=WP_002210828.1;gbkey=CDS;product=pectin degradation protein kdgF;protein_id=WP_002210828.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2087414	2088734	.	+	.	ID=id250;gbkey=repeat_region
NC_004088.1	RefSeq	region	2087418	2088732	.	+	.	ID=id251;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2087489	2088697	.	+	.	ID=gene1940;Name=Y_RS09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09730;old_locus_tag=y1889
NC_004088.1	Protein Homology	CDS	2087489	2088697	.	+	0	ID=cds1875;Parent=gene1940;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2088948	2089613	.	-	.	ID=gene1941;Name=Y_RS09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09735;old_locus_tag=y1890
NC_004088.1	Protein Homology	CDS	2088948	2089613	.	-	0	ID=cds1876;Parent=gene1941;Dbxref=Genbank:WP_002220277.1;Name=WP_002220277.1;Note=YniC%3B catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate%2C mannose 6-phosphate and p-nitrophenyl phosphate;gbkey=CDS;product=2-deoxyglucose-6-phosphatase;protein_id=WP_002220277.1;transl_table=11
NC_004088.1	RefSeq	gene	2090024	2090578	.	+	.	ID=gene1942;Name=Y_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09740;old_locus_tag=y1891
NC_004088.1	Protein Homology	CDS	2090024	2090578	.	+	0	ID=cds1877;Parent=gene1942;Dbxref=Genbank:WP_002211847.1;Name=WP_002211847.1;gbkey=CDS;product=yfeABCD regulator yfeE;protein_id=WP_002211847.1;transl_table=11
NC_004088.1	RefSeq	gene	2090707	2091582	.	-	.	ID=gene1943;Name=Y_RS09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09745;old_locus_tag=y1892
NC_004088.1	Protein Homology	CDS	2090707	2091582	.	-	0	ID=cds1878;Parent=gene1943;Dbxref=Genbank:WP_002211846.1;Name=WP_002211846.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211846.1;transl_table=11
NC_004088.1	RefSeq	gene	2091607	2091819	.	-	.	ID=gene1944;Name=Y_RS09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09750;old_locus_tag=y1893
NC_004088.1	Protein Homology	CDS	2091607	2091819	.	-	0	ID=cds1879;Parent=gene1944;Dbxref=Genbank:WP_002216683.1;Name=WP_002216683.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216683.1;transl_table=11
NC_004088.1	RefSeq	gene	2091887	2092780	.	-	.	ID=gene1945;Name=Y_RS09755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09755;old_locus_tag=y1894
NC_004088.1	Protein Homology	CDS	2091887	2092780	.	-	0	ID=cds1880;Parent=gene1945;Dbxref=Genbank:WP_002211845.1;Name=WP_002211845.1;gbkey=CDS;product=chelated iron transport system membrane protein YfeD;protein_id=WP_002211845.1;transl_table=11
NC_004088.1	RefSeq	gene	2092777	2093661	.	-	.	ID=gene1946;Name=Y_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09760;old_locus_tag=y1895
NC_004088.1	Protein Homology	CDS	2092777	2093661	.	-	0	ID=cds1881;Parent=gene1946;Dbxref=Genbank:WP_002211844.1;Name=WP_002211844.1;gbkey=CDS;product=chelated iron transport system membrane protein YfeC;protein_id=WP_002211844.1;transl_table=11
NC_004088.1	RefSeq	gene	2093661	2094551	.	-	.	ID=gene1947;Name=Y_RS09765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09765;old_locus_tag=y1896
NC_004088.1	Protein Homology	CDS	2093661	2094551	.	-	0	ID=cds1882;Parent=gene1947;Dbxref=Genbank:WP_002211843.1;Name=WP_002211843.1;gbkey=CDS;product=chelated iron transport system membrane protein YfeB;protein_id=WP_002211843.1;transl_table=11
NC_004088.1	RefSeq	gene	2094548	2095516	.	-	.	ID=gene1948;Name=Y_RS09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09770;old_locus_tag=y1897
NC_004088.1	Protein Homology	CDS	2094548	2095516	.	-	0	ID=cds1883;Parent=gene1948;Dbxref=Genbank:WP_002211842.1;Name=WP_002211842.1;gbkey=CDS;product=iron-binding protein;protein_id=WP_002211842.1;transl_table=11
NC_004088.1	RefSeq	gene	2095728	2096390	.	+	.	ID=gene1949;Name=Y_RS09775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09775;old_locus_tag=y1898
NC_004088.1	Protein Homology	CDS	2095728	2096390	.	+	0	ID=cds1884;Parent=gene1949;Dbxref=Genbank:WP_002216686.1;Name=WP_002216686.1;gbkey=CDS;product=lytic transglycosylase;protein_id=WP_002216686.1;transl_table=11
NC_004088.1	RefSeq	gene	2096512	2097195	.	-	.	ID=gene1950;Name=Y_RS09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09780;old_locus_tag=y1899
NC_004088.1	Protein Homology	CDS	2096512	2097195	.	-	0	ID=cds1885;Parent=gene1950;Dbxref=Genbank:WP_002211840.1;Name=WP_002211840.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211840.1;transl_table=11
NC_004088.1	RefSeq	gene	2097514	2097765	.	+	.	ID=gene1951;Name=Y_RS09785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09785
NC_004088.1	Protein Homology	CDS	2097514	2097765	.	+	0	ID=cds1886;Parent=gene1951;Dbxref=Genbank:WP_002211839.1;Name=WP_002211839.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211839.1;transl_table=11
NC_004088.1	RefSeq	gene	2097837	2098214	.	-	.	ID=gene1952;Name=Y_RS09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09790
NC_004088.1	Protein Homology	CDS	2097837	2098214	.	-	0	ID=cds1887;Parent=gene1952;Dbxref=Genbank:WP_002216692.1;Name=WP_002216692.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216692.1;transl_table=11
NC_004088.1	RefSeq	gene	2098524	2098736	.	-	.	ID=gene1953;Name=Y_RS09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09795;old_locus_tag=y1902
NC_004088.1	Protein Homology	CDS	2098524	2098736	.	-	0	ID=cds1888;Parent=gene1953;Dbxref=Genbank:WP_002216696.1;Name=WP_002216696.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216696.1;transl_table=11
NC_004088.1	RefSeq	gene	2099127	2101055	.	+	.	ID=gene1954;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=Y_RS09800;old_locus_tag=y1903
NC_004088.1	Protein Homology	CDS	2099127	2101055	.	+	0	ID=cds1889;Parent=gene1954;Dbxref=Genbank:WP_002211836.1;Name=WP_002211836.1;Note=catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr);gbkey=CDS;gene=thrS;product=threonine--tRNA ligase;protein_id=WP_002211836.1;transl_table=11
NC_004088.1	RefSeq	gene	2101260	2101610	.	+	.	ID=gene1955;Name=Y_RS09805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09805;old_locus_tag=y1904
NC_004088.1	Protein Homology	CDS	2101260	2101610	.	+	0	ID=cds1890;Parent=gene1955;Dbxref=Genbank:WP_002211835.1;Name=WP_002211835.1;gbkey=CDS;product=translation initiation factor IF-3;protein_id=WP_002211835.1;transl_table=11
NC_004088.1	RefSeq	gene	2101707	2101904	.	+	.	ID=gene1956;Name=Y_RS09810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09810
NC_004088.1	Protein Homology	CDS	2101707	2101904	.	+	0	ID=cds1891;Parent=gene1956;Dbxref=Genbank:WP_002211834.1;Name=WP_002211834.1;gbkey=CDS;product=50S ribosomal protein L35;protein_id=WP_002211834.1;transl_table=11
NC_004088.1	RefSeq	gene	2101942	2102298	.	+	.	ID=gene1957;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=Y_RS09815;old_locus_tag=y1905
NC_004088.1	Protein Homology	CDS	2101942	2102298	.	+	0	ID=cds1892;Parent=gene1957;Dbxref=Genbank:WP_002211833.1;Name=WP_002211833.1;Note=binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit;gbkey=CDS;gene=rplT;product=50S ribosomal protein L20;protein_id=WP_002211833.1;transl_table=11
NC_004088.1	RefSeq	gene	2102797	2103780	.	+	.	ID=gene1958;Name=Y_RS09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09820;old_locus_tag=y1908
NC_004088.1	Protein Homology	CDS	2102797	2103780	.	+	0	ID=cds1893;Parent=gene1958;Dbxref=Genbank:WP_002211832.1;Name=WP_002211832.1;gbkey=CDS;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_002211832.1;transl_table=11
NC_004088.1	RefSeq	gene	2103794	2106181	.	+	.	ID=gene1959;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=Y_RS09825;old_locus_tag=y1909
NC_004088.1	Protein Homology	CDS	2103794	2106181	.	+	0	ID=cds1894;Parent=gene1959;Dbxref=Genbank:WP_002211831.1;Name=WP_002211831.1;Note=catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 2 subfamily;gbkey=CDS;gene=pheT;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_002211831.1;transl_table=11
NC_004088.1	RefSeq	gene	2106186	2106482	.	+	.	ID=gene1960;Name=ihfA;gbkey=Gene;gene=ihfA;gene_biotype=protein_coding;locus_tag=Y_RS09830;old_locus_tag=y1910
NC_004088.1	Protein Homology	CDS	2106186	2106482	.	+	0	ID=cds1895;Parent=gene1960;Dbxref=Genbank:WP_002211830.1;Name=WP_002211830.1;Note=This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control;gbkey=CDS;gene=ihfA;product=integration host factor subunit alpha;protein_id=WP_002211830.1;transl_table=11
NC_004088.1	RefSeq	gene	2106816	2107274	.	+	.	ID=gene1961;Name=Y_RS09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09835;old_locus_tag=y1913
NC_004088.1	Protein Homology	CDS	2106816	2107274	.	+	0	ID=cds1896;Parent=gene1961;Dbxref=Genbank:WP_002211829.1;Name=WP_002211829.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211829.1;transl_table=11
NC_004088.1	RefSeq	gene	2107501	2108508	.	+	.	ID=gene1962;Name=Y_RS09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09840;old_locus_tag=y1914
NC_004088.1	Protein Homology	CDS	2107501	2108508	.	+	0	ID=cds1897;Parent=gene1962;Dbxref=Genbank:WP_002220283.1;Name=WP_002220283.1;gbkey=CDS;product=vitamin B12 import system permease BtuC;protein_id=WP_002220283.1;transl_table=11
NC_004088.1	RefSeq	gene	2108578	2109132	.	+	.	ID=gene1963;Name=btuE;gbkey=Gene;gene=btuE;gene_biotype=protein_coding;locus_tag=Y_RS09845;old_locus_tag=y1915
NC_004088.1	Protein Homology	CDS	2108578	2109132	.	+	0	ID=cds1898;Parent=gene1963;Dbxref=Genbank:WP_002211827.1;Name=WP_002211827.1;Note=similar to glutathione peroxidase%3B member of the btuCED operon which is required for vitamin B12 transport across the inner membrane;gbkey=CDS;gene=btuE;product=glutathione peroxidase;protein_id=WP_002211827.1;transl_table=11
NC_004088.1	RefSeq	gene	2109157	2109915	.	+	.	ID=gene1964;Name=Y_RS09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09850;old_locus_tag=y1916
NC_004088.1	Protein Homology	CDS	2109157	2109915	.	+	0	ID=cds1899;Parent=gene1964;Dbxref=Genbank:WP_002211826.1;Name=WP_002211826.1;gbkey=CDS;product=vitamin B12 ABC transporter ATP-binding protein;protein_id=WP_002211826.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	2110194	2110212	.	+	.	ID=id252;Dbxref=CollecTF:EXPSITE_00000cf0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y1919%2C y1918%2C y1917%2C y1920%2C y1921%2C y1922%2C y1923;gbkey=protein_bind
NC_004088.1	RefSeq	gene	2110265	2111419	.	+	.	ID=gene1965;Name=Y_RS09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09855;old_locus_tag=y1917
NC_004088.1	Protein Homology	CDS	2110265	2111419	.	+	0	ID=cds1900;Parent=gene1965;Dbxref=Genbank:WP_002211825.1;Name=WP_002211825.1;Note=catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose;gbkey=CDS;product=UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase;protein_id=WP_002211825.1;transl_table=11
NC_004088.1	RefSeq	gene	2111406	2112389	.	+	.	ID=gene1966;Name=Y_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09860;old_locus_tag=y1918
NC_004088.1	Protein Homology	CDS	2111406	2112389	.	+	0	ID=cds1901;Parent=gene1966;Dbxref=Genbank:WP_002211824.1;Name=WP_002211824.1;Note=catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate;gbkey=CDS;product=undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase;protein_id=WP_002211824.1;transl_table=11
NC_004088.1	RefSeq	gene	2112386	2114389	.	+	.	ID=gene1967;Name=Y_RS09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09865;old_locus_tag=y1919
NC_004088.1	Protein Homology	CDS	2112386	2114389	.	+	0	ID=cds1902;Parent=gene1967;Dbxref=Genbank:WP_002211823.1;Name=WP_002211823.1;Note=Bifunctional polymyxin resistance arnA protein%3B catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose%3B active in certain mutant strains;gbkey=CDS;product=bifunctional polymyxin resistance protein ArnA;protein_id=WP_002211823.1;transl_table=11
NC_004088.1	RefSeq	gene	2114386	2115291	.	+	.	ID=gene1968;Name=Y_RS09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09870;old_locus_tag=y1920
NC_004088.1	Protein Homology	CDS	2114386	2115291	.	+	0	ID=cds1903;Parent=gene1968;Dbxref=Genbank:WP_002211822.1;Name=WP_002211822.1;Note=catalyzes the formation of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol;gbkey=CDS;product=4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD;protein_id=WP_002211822.1;transl_table=11
NC_004088.1	RefSeq	gene	2115288	2116952	.	+	.	ID=gene1969;Name=arnT;gbkey=Gene;gene=arnT;gene_biotype=protein_coding;locus_tag=Y_RS09875;old_locus_tag=y1921
NC_004088.1	Protein Homology	CDS	2115288	2116952	.	+	0	ID=cds1904;Parent=gene1969;Dbxref=Genbank:WP_002211821.1;Name=WP_002211821.1;Note=catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A;gbkey=CDS;gene=arnT;product=undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase;protein_id=WP_002211821.1;transl_table=11
NC_004088.1	RefSeq	gene	2116949	2117293	.	+	.	ID=gene1970;Name=Y_RS09880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09880;old_locus_tag=y1922
NC_004088.1	Protein Homology	CDS	2116949	2117293	.	+	0	ID=cds1905;Parent=gene1970;Dbxref=Genbank:WP_002211820.1;Name=WP_002211820.1;gbkey=CDS;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE;protein_id=WP_002211820.1;transl_table=11
NC_004088.1	RefSeq	gene	2117290	2117676	.	+	.	ID=gene1971;Name=Y_RS09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09885;old_locus_tag=y1923
NC_004088.1	Protein Homology	CDS	2117290	2117676	.	+	0	ID=cds1906;Parent=gene1971;Dbxref=Genbank:WP_002211819.1;Name=WP_002211819.1;gbkey=CDS;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF;protein_id=WP_002211819.1;transl_table=11
NC_004088.1	RefSeq	gene	2117956	2118420	.	+	.	ID=gene1972;Name=Y_RS09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09890;old_locus_tag=y1925
NC_004088.1	Protein Homology	CDS	2117956	2118420	.	+	0	ID=cds1907;Parent=gene1972;Dbxref=Genbank:WP_002216102.1;Name=WP_002216102.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002216102.1;transl_table=11
NC_004088.1	RefSeq	gene	2118545	2119561	.	+	.	ID=gene1973;Name=lplA;gbkey=Gene;gene=lplA;gene_biotype=protein_coding;locus_tag=Y_RS09895;old_locus_tag=y1926
NC_004088.1	Protein Homology	CDS	2118545	2119561	.	+	0	ID=cds1908;Parent=gene1973;Dbxref=Genbank:WP_002211816.1;Name=WP_002211816.1;Note=Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins;gbkey=CDS;gene=lplA;product=lipoate-protein ligase A;protein_id=WP_002211816.1;transl_table=11
NC_004088.1	RefSeq	gene	2119613	2121076	.	+	.	ID=gene1974;Name=Y_RS09900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS09900;pseudo=true
NC_004088.1	Protein Homology	CDS	2119613	2121076	.	+	0	ID=cds1909;Parent=gene1974;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:2120333..2120335%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	2121245	2122291	.	-	.	ID=gene1975;Name=Y_RS09905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09905;old_locus_tag=y1928
NC_004088.1	Protein Homology	CDS	2121245	2122291	.	-	0	ID=cds1910;Parent=gene1975;Dbxref=Genbank:WP_002211815.1;Name=WP_002211815.1;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=WP_002211815.1;transl_table=11
NC_004088.1	RefSeq	gene	2122448	2123269	.	-	.	ID=gene1976;Name=Y_RS09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09910;old_locus_tag=y1929
NC_004088.1	Protein Homology	CDS	2122448	2123269	.	-	0	ID=cds1911;Parent=gene1976;Dbxref=Genbank:WP_002211814.1;Name=WP_002211814.1;gbkey=CDS;product=PEP synthetase regulatory protein;protein_id=WP_002211814.1;transl_table=11
NC_004088.1	RefSeq	gene	2123606	2125990	.	+	.	ID=gene1977;Name=Y_RS09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09915;old_locus_tag=y1930
NC_004088.1	Protein Homology	CDS	2123606	2125990	.	+	0	ID=cds1912;Parent=gene1977;Dbxref=Genbank:WP_002211813.1;Name=WP_002211813.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=phosphoenolpyruvate synthase;protein_id=WP_002211813.1;transl_table=11
NC_004088.1	RefSeq	gene	2126589	2127692	.	-	.	ID=gene1978;Name=Y_RS09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09920;old_locus_tag=y1931
NC_004088.1	Protein Homology	CDS	2126589	2127692	.	-	0	ID=cds1913;Parent=gene1978;Dbxref=Genbank:WP_002211812.1;Name=WP_002211812.1;Note=YdiK%3B inner membrane protein%3B ydiK promoter presents a PurR sequence%2C suggesting that its expression is purine-regulated%3B unknown function;gbkey=CDS;product=membrane protein;protein_id=WP_002211812.1;transl_table=11
NC_004088.1	RefSeq	gene	2128313	2131369	.	+	.	ID=gene1979;Name=Y_RS09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09925;old_locus_tag=y1932
NC_004088.1	Protein Homology	CDS	2128313	2131369	.	+	0	ID=cds1914;Parent=gene1979;Dbxref=Genbank:WP_002211811.1;Name=WP_002211811.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211811.1;transl_table=11
NC_004088.1	RefSeq	gene	2131491	2131907	.	+	.	ID=gene1980;Name=Y_RS09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09930;old_locus_tag=y1933
NC_004088.1	Protein Homology	CDS	2131491	2131907	.	+	0	ID=cds1915;Parent=gene1980;Dbxref=Genbank:WP_002211810.1;Name=WP_002211810.1;Note=required for efficient enterobactin production;gbkey=CDS;product=acyl-CoA esterase;protein_id=WP_002211810.1;transl_table=11
NC_004088.1	RefSeq	gene	2132166	2132324	.	+	.	ID=gene1981;Name=Y_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09935
NC_004088.1	Protein Homology	CDS	2132166	2132324	.	+	0	ID=cds1916;Parent=gene1981;Dbxref=Genbank:WP_002218287.1;Name=WP_002218287.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002218287.1;transl_table=11
NC_004088.1	RefSeq	gene	2132502	2132873	.	+	.	ID=gene1982;Name=sufA;gbkey=Gene;gene=sufA;gene_biotype=protein_coding;locus_tag=Y_RS09940;old_locus_tag=y1934
NC_004088.1	Protein Homology	CDS	2132502	2132873	.	+	0	ID=cds1917;Parent=gene1982;Dbxref=Genbank:WP_002211809.1;Name=WP_002211809.1;Note=functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]%3B [4Fe-4S]) are assembled%3B forms a homodimer%3B similar to IscA protein;gbkey=CDS;gene=sufA;product=(Fe-S)-cluster assembly protein;protein_id=WP_002211809.1;transl_table=11
NC_004088.1	RefSeq	gene	2132888	2134399	.	+	.	ID=gene1983;Name=Y_RS09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09945;old_locus_tag=y1935
NC_004088.1	Protein Homology	CDS	2132888	2134399	.	+	0	ID=cds1918;Parent=gene1983;Dbxref=Genbank:WP_002211808.1;Name=WP_002211808.1;Note=with SufCD activates cysteine desulfurase SufS;gbkey=CDS;product=Fe-S cluster assembly protein SufB;protein_id=WP_002211808.1;transl_table=11
NC_004088.1	RefSeq	gene	2134585	2135331	.	+	.	ID=gene1984;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=Y_RS09950;old_locus_tag=y1936
NC_004088.1	Protein Homology	CDS	2134585	2135331	.	+	0	ID=cds1919;Parent=gene1984;Dbxref=Genbank:WP_002211807.1;Name=WP_002211807.1;Note=part of SUF system involved in inserting iron-sulfur clusters into proteins%3B in Escherichia coli this protein forms a complex with SufBD%3B the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE;gbkey=CDS;gene=sufC;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_002211807.1;transl_table=11
NC_004088.1	RefSeq	gene	2135306	2136631	.	+	.	ID=gene1985;Name=Y_RS09955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09955;old_locus_tag=y1937
NC_004088.1	Protein Homology	CDS	2135306	2136631	.	+	0	ID=cds1920;Parent=gene1985;Dbxref=Genbank:WP_002211806.1;Name=WP_002211806.1;gbkey=CDS;product=Fe-S cluster assembly protein SufD;protein_id=WP_002211806.1;transl_table=11
NC_004088.1	RefSeq	gene	2136628	2137848	.	+	.	ID=gene1986;Name=Y_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09960;old_locus_tag=y1938
NC_004088.1	Protein Homology	CDS	2136628	2137848	.	+	0	ID=cds1921;Parent=gene1986;Dbxref=Genbank:WP_002211805.1;Name=WP_002211805.1;gbkey=CDS;product=cysteine desulfurase;protein_id=WP_002211805.1;transl_table=11
NC_004088.1	RefSeq	gene	2137937	2138359	.	+	.	ID=gene1987;Name=Y_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09965;old_locus_tag=y1939
NC_004088.1	Protein Homology	CDS	2137937	2138359	.	+	0	ID=cds1922;Parent=gene1987;Dbxref=Genbank:WP_002211804.1;Name=WP_002211804.1;Note=Acts with SufS to catalyze the formation of L-alanine from L-cysteine;gbkey=CDS;product=cysteine desulfuration protein SufE;protein_id=WP_002211804.1;transl_table=11
NC_004088.1	RefSeq	gene	2138630	2139694	.	+	.	ID=gene1988;Name=Y_RS09970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09970;old_locus_tag=y1940
NC_004088.1	Protein Homology	CDS	2138630	2139694	.	+	0	ID=cds1923;Parent=gene1988;Dbxref=Genbank:WP_002223648.1;Name=WP_002223648.1;gbkey=CDS;product=murein transpeptidase;protein_id=WP_002223648.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2140007	2142687	.	+	.	ID=id253;gbkey=repeat_region
NC_004088.1	RefSeq	region	2140011	2140210	.	-	.	ID=id254;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	region	2140210	2142163	.	-	.	ID=id255;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2140276	2141055	.	-	.	ID=gene1989;Name=Y_RS09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09975;old_locus_tag=y1941
NC_004088.1	Protein Homology	CDS	2140276	2141055	.	-	0	ID=cds1924;Parent=gene1989;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	2141055	2142077	.	-	.	ID=gene1990;Name=Y_RS09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09980;old_locus_tag=y1942
NC_004088.1	Protein Homology	CDS	2141055	2142077	.	-	0	ID=cds1925;Parent=gene1990;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	2142104	2142535	.	-	.	ID=gene1991;Name=Y_RS09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09985
NC_004088.1	Protein Homology	CDS	2142104	2142535	.	-	0	ID=cds1926;Parent=gene1991;Dbxref=Genbank:WP_011566176.1;Name=WP_011566176.1;gbkey=CDS;product=transposase;protein_id=WP_011566176.1;transl_table=11
NC_004088.1	RefSeq	region	2142163	2142680	.	-	.	ID=id256;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2142525	2142695	.	-	.	ID=gene1992;Name=Y_RS09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09990
NC_004088.1	Protein Homology	CDS	2142525	2142695	.	-	0	ID=cds1927;Parent=gene1992;Dbxref=Genbank:WP_002430115.1;Name=WP_002430115.1;gbkey=CDS;product=invasin;protein_id=WP_002430115.1;transl_table=11
NC_004088.1	RefSeq	gene	2142726	2142962	.	-	.	ID=gene1993;Name=Y_RS09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS09995;old_locus_tag=y5000
NC_004088.1	Protein Homology	CDS	2142726	2142962	.	-	0	ID=cds1928;Parent=gene1993;Dbxref=Genbank:WP_002227902.1;Name=WP_002227902.1;Note=major outer membrane lipoprotein%3B interacts with peptidoglycan to maintain the integrity of the cell envelope;gbkey=CDS;product=hypothetical protein;protein_id=WP_002227902.1;transl_table=11
NC_004088.1	RefSeq	gene	2143283	2144695	.	-	.	ID=gene1994;Name=Y_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10000;old_locus_tag=y1944
NC_004088.1	Protein Homology	CDS	2143283	2144695	.	-	0	ID=cds1929;Parent=gene1994;Dbxref=Genbank:WP_002210936.1;Name=WP_002210936.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=pyruvate kinase;protein_id=WP_002210936.1;transl_table=11
NC_004088.1	RefSeq	gene	2145271	2145347	.	-	.	ID=gene1995;Name=Y_RS10005;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS10005;old_locus_tag=yt043
NC_004088.1	tRNAscan-SE	tRNA	2145271	2145347	.	-	.	ID=rna60;Parent=gene1995;anticodon=(pos:complement(2145311..2145313));gbkey=tRNA;product=tRNA-Val
NC_004088.1	tRNAscan-SE	exon	2145271	2145347	.	-	.	ID=id257;Parent=rna60;anticodon=(pos:complement(2145311..2145313));gbkey=tRNA;product=tRNA-Val
NC_004088.1	RefSeq	gene	2145407	2145483	.	-	.	ID=gene1996;Name=Y_RS10010;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS10010;old_locus_tag=yt044
NC_004088.1	tRNAscan-SE	tRNA	2145407	2145483	.	-	.	ID=rna61;Parent=gene1996;anticodon=(pos:complement(2145447..2145449));gbkey=tRNA;product=tRNA-Val
NC_004088.1	tRNAscan-SE	exon	2145407	2145483	.	-	.	ID=id258;Parent=rna61;anticodon=(pos:complement(2145447..2145449));gbkey=tRNA;product=tRNA-Val
NC_004088.1	RefSeq	gene	2145726	2147099	.	-	.	ID=gene1997;Name=Y_RS10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10015;old_locus_tag=y1945
NC_004088.1	Protein Homology	CDS	2145726	2147099	.	-	0	ID=cds1930;Parent=gene1997;Dbxref=Genbank:WP_002210937.1;Name=WP_002210937.1;Note=NorM%3B MdtK%3B functions as a Na(+)/drug antiporter%3B inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones;gbkey=CDS;product=multidrug resistance protein MdtK;protein_id=WP_002210937.1;transl_table=11
NC_004088.1	RefSeq	gene	2147348	2148004	.	+	.	ID=gene1998;Name=Y_RS10020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10020;old_locus_tag=y1946
NC_004088.1	Protein Homology	CDS	2147348	2148004	.	+	0	ID=cds1931;Parent=gene1998;Dbxref=Genbank:WP_002210939.1;Name=WP_002210939.1;Note=catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine;gbkey=CDS;product=riboflavin synthase subunit alpha;protein_id=WP_002210939.1;transl_table=11
NC_004088.1	RefSeq	gene	2148055	2149206	.	-	.	ID=gene1999;Name=Y_RS10025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10025;old_locus_tag=y1947
NC_004088.1	Protein Homology	CDS	2148055	2149206	.	-	0	ID=cds1932;Parent=gene1999;Dbxref=Genbank:WP_002210940.1;Name=WP_002210940.1;Note=catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge;gbkey=CDS;product=cyclopropane fatty acyl phospholipid synthase;protein_id=WP_002210940.1;transl_table=11
NC_004088.1	RefSeq	gene	2149686	2150888	.	-	.	ID=gene2000;Name=Y_RS10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10030;old_locus_tag=y1948
NC_004088.1	Protein Homology	CDS	2149686	2150888	.	-	0	ID=cds1933;Parent=gene2000;Dbxref=Genbank:WP_002210941.1;Name=WP_002210941.1;Note=uncharacterized member of the major facilitator superfamily (MFS);gbkey=CDS;product=Bcr/CflA family drug resistance efflux transporter;protein_id=WP_002210941.1;transl_table=11
NC_004088.1	RefSeq	gene	2151178	2152110	.	+	.	ID=gene2001;Name=Y_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10035;old_locus_tag=y1949
NC_004088.1	Protein Homology	CDS	2151178	2152110	.	+	0	ID=cds1934;Parent=gene2001;Dbxref=Genbank:WP_002210942.1;Name=WP_002210942.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002210942.1;transl_table=11
NC_004088.1	RefSeq	gene	2152199	2153224	.	-	.	ID=gene2002;Name=Y_RS10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10040;old_locus_tag=y1950
NC_004088.1	Protein Homology	CDS	2152199	2153224	.	-	0	ID=cds1935;Parent=gene2002;Dbxref=Genbank:WP_002210943.1;Name=WP_002210943.1;Note=binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis%3B is involved in regulation of purB%2C purC%2C purEK%2C purHD%2C purL%2C purMN and guaBA expression%3B binds hypoxanthine and guanine as inducers;gbkey=CDS;product=PurR family transcriptional regulator;protein_id=WP_002210943.1;transl_table=11
NC_004088.1	RefSeq	gene	2153751	2154329	.	-	.	ID=gene2003;Name=Y_RS10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10045;old_locus_tag=y1951
NC_004088.1	Protein Homology	CDS	2153751	2154329	.	-	0	ID=cds1936;Parent=gene2003;Dbxref=Genbank:WP_002210944.1;Name=WP_002210944.1;Note=SodB%3B iron binding%3B present under aerobic and anaerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase;protein_id=WP_002210944.1;transl_table=11
NC_004088.1	RefSeq	gene	2154707	2155558	.	-	.	ID=gene2004;Name=Y_RS10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10050;old_locus_tag=y1952
NC_004088.1	Protein Homology	CDS	2154707	2155558	.	-	0	ID=cds1937;Parent=gene2004;Dbxref=Genbank:WP_002210945.1;Name=WP_002210945.1;gbkey=CDS;product=hydrolase;protein_id=WP_002210945.1;transl_table=11
NC_004088.1	RefSeq	gene	2155677	2155898	.	+	.	ID=gene2005;Name=Y_RS10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10055
NC_004088.1	Protein Homology	CDS	2155677	2155898	.	+	0	ID=cds1938;Parent=gene2005;Dbxref=Genbank:WP_002216283.1;Name=WP_002216283.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216283.1;transl_table=11
NC_004088.1	RefSeq	gene	2155998	2156348	.	+	.	ID=gene2006;Name=Y_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10060;old_locus_tag=y1953
NC_004088.1	Protein Homology	CDS	2155998	2156348	.	+	0	ID=cds1939;Parent=gene2006;Dbxref=Genbank:WP_002210946.1;Name=WP_002210946.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_002210946.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2156446	2156620	.	+	.	ID=id259;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2156657	2157337	.	-	.	ID=gene2007;Name=Y_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10065;old_locus_tag=y1955
NC_004088.1	Protein Homology	CDS	2156657	2157337	.	-	0	ID=cds1940;Parent=gene2007;Dbxref=Genbank:WP_002210947.1;Name=WP_002210947.1;Note=Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A);gbkey=CDS;product=ribonuclease T;protein_id=WP_002210947.1;transl_table=11
NC_004088.1	RefSeq	gene	2157416	2157823	.	-	.	ID=gene2008;Name=Y_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10070;old_locus_tag=y1957
NC_004088.1	Protein Homology	CDS	2157416	2157823	.	-	0	ID=cds1941;Parent=gene2008;Dbxref=Genbank:WP_002210948.1;Name=WP_002210948.1;Note=Ni-dependent%3B catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione;gbkey=CDS;product=lactoylglutathione lyase;protein_id=WP_002210948.1;transl_table=11
NC_004088.1	RefSeq	gene	2158025	2158798	.	-	.	ID=gene2009;Name=Y_RS10075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS10075;old_locus_tag=y1958;partial=true;pseudo=true;start_range=.,2158025
NC_004088.1	Protein Homology	CDS	2158025	2158798	.	-	0	ID=cds1942;Parent=gene2009;Note=FMN-linked%3B catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=N-ethylmaleimide reductase;pseudo=true;start_range=.,2158025;transl_table=11
NC_004088.1	RefSeq	gene	2158886	2159485	.	-	.	ID=gene2010;Name=Y_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10080;old_locus_tag=y1959
NC_004088.1	Protein Homology	CDS	2158886	2159485	.	-	0	ID=cds1943;Parent=gene2010;Dbxref=Genbank:WP_002210951.1;Name=WP_002210951.1;Note=represses nemA which is involved in degradation of N-ethylmaleimide;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_002210951.1;transl_table=11
NC_004088.1	RefSeq	gene	2159708	2161288	.	-	.	ID=gene2011;Name=Y_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10085;old_locus_tag=y1960
NC_004088.1	Protein Homology	CDS	2159708	2161288	.	-	0	ID=cds1944;Parent=gene2011;Dbxref=Genbank:WP_042468452.1;Name=WP_042468452.1;gbkey=CDS;product=hydrolase;protein_id=WP_042468452.1;transl_table=11
NC_004088.1	RefSeq	gene	2161852	2162283	.	+	.	ID=gene2012;Name=Y_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10090;old_locus_tag=y1961
NC_004088.1	Protein Homology	CDS	2161852	2162283	.	+	0	ID=cds1945;Parent=gene2012;Dbxref=Genbank:WP_002210955.1;Name=WP_002210955.1;Note=Transcription regulator that can both activate or repress expression;gbkey=CDS;product=SlyA family transcriptional regulator;protein_id=WP_002210955.1;transl_table=11
NC_004088.1	RefSeq	gene	2162427	2162894	.	-	.	ID=gene2013;Name=Y_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10095;old_locus_tag=y1962
NC_004088.1	Protein Homology	CDS	2162427	2162894	.	-	0	ID=cds1946;Parent=gene2013;Dbxref=Genbank:WP_002210956.1;Name=WP_002210956.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002210956.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	2163087	2163105	.	-	.	ID=id260;Dbxref=CollecTF:EXPSITE_00000c90;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y1962;gbkey=protein_bind
NC_004088.1	RefSeq	gene	2163450	2164562	.	+	.	ID=gene2014;Name=anmK;gbkey=Gene;gene=anmK;gene_biotype=protein_coding;gene_synonym=ydhH;locus_tag=Y_RS10100;old_locus_tag=y1963
NC_004088.1	Protein Homology	CDS	2163450	2164562	.	+	0	ID=cds1947;Parent=gene2014;Dbxref=Genbank:WP_002218322.1;Name=WP_002218322.1;Note=catalyzes hydrolysis of 1%2C6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate%3B involved in murein recycling;gbkey=CDS;gene=anmK;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_002218322.1;transl_table=11
NC_004088.1	RefSeq	gene	2164620	2164934	.	+	.	ID=gene2015;Name=Y_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10105;old_locus_tag=y1964
NC_004088.1	Protein Homology	CDS	2164620	2164934	.	+	0	ID=cds1948;Parent=gene2015;Dbxref=Genbank:WP_002218323.1;Name=WP_002218323.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002218323.1;transl_table=11
NC_004088.1	RefSeq	gene	2165025	2165678	.	+	.	ID=gene2016;Name=Y_RS10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10110;old_locus_tag=y1965
NC_004088.1	Protein Homology	CDS	2165025	2165678	.	+	0	ID=cds1949;Parent=gene2016;Dbxref=Genbank:WP_002210959.1;Name=WP_002210959.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate;gbkey=CDS;product=pyridoxine/pyridoxamine 5'-phosphate oxidase;protein_id=WP_002210959.1;transl_table=11
NC_004088.1	RefSeq	gene	2165860	2167134	.	+	.	ID=gene2017;Name=Y_RS10115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10115;old_locus_tag=y1966
NC_004088.1	Protein Homology	CDS	2165860	2167134	.	+	0	ID=cds1950;Parent=gene2017;Dbxref=Genbank:WP_002210960.1;Name=WP_002210960.1;gbkey=CDS;product=tyrosine--tRNA ligase;protein_id=WP_002210960.1;transl_table=11
NC_004088.1	RefSeq	gene	2167289	2168149	.	+	.	ID=gene2018;Name=Y_RS10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10120;old_locus_tag=y1967
NC_004088.1	Protein Homology	CDS	2167289	2168149	.	+	0	ID=cds1951;Parent=gene2018;Dbxref=Genbank:WP_002210961.1;Name=WP_002210961.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal;gbkey=CDS;product=pyridoxamine kinase;protein_id=WP_002210961.1;transl_table=11
NC_004088.1	RefSeq	gene	2168209	2168814	.	-	.	ID=gene2019;Name=Y_RS10125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10125;old_locus_tag=y1968
NC_004088.1	Protein Homology	CDS	2168209	2168814	.	-	0	ID=cds1952;Parent=gene2019;Dbxref=Genbank:WP_002210962.1;Name=WP_002210962.1;gbkey=CDS;product=glutathionine S-transferase;protein_id=WP_002210962.1;transl_table=11
NC_004088.1	RefSeq	gene	2169059	2169322	.	-	.	ID=gene2020;Name=Y_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10130;old_locus_tag=y1969
NC_004088.1	Protein Homology	CDS	2169059	2169322	.	-	0	ID=cds1953;Parent=gene2020;Dbxref=Genbank:WP_002210964.1;Name=WP_002210964.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210964.1;transl_table=11
NC_004088.1	RefSeq	gene	2169568	2170158	.	-	.	ID=gene2021;Name=Y_RS10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10135;old_locus_tag=y1970
NC_004088.1	Protein Homology	CDS	2169568	2170158	.	-	0	ID=cds1954;Parent=gene2021;Dbxref=Genbank:WP_002210965.1;Name=WP_002210965.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210965.1;transl_table=11
NC_004088.1	RefSeq	gene	2170413	2171918	.	-	.	ID=gene2022;Name=tppB;gbkey=Gene;gene=tppB;gene_biotype=protein_coding;gene_synonym=ydgR;locus_tag=Y_RS10140;old_locus_tag=y1971
NC_004088.1	Protein Homology	CDS	2170413	2171918	.	-	0	ID=cds1955;Parent=gene2022;Dbxref=Genbank:WP_002215910.1;Name=WP_002215910.1;Note=mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation;gbkey=CDS;gene=tppB;product=dipeptide and tripeptide permease A;protein_id=WP_002215910.1;transl_table=11
NC_004088.1	RefSeq	gene	2172561	2173841	.	-	.	ID=gene2023;Name=Y_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10145;old_locus_tag=y1972
NC_004088.1	Protein Homology	CDS	2172561	2173841	.	-	0	ID=cds1956;Parent=gene2023;Dbxref=Genbank:WP_002210967.1;Name=WP_002210967.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210967.1;transl_table=11
NC_004088.1	RefSeq	gene	2174231	2175046	.	-	.	ID=gene2024;Name=Y_RS10150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10150;old_locus_tag=y1973
NC_004088.1	Protein Homology	CDS	2174231	2175046	.	-	0	ID=cds1957;Parent=gene2024;Dbxref=Genbank:WP_002210969.1;Name=WP_002210969.1;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_002210969.1;transl_table=11
NC_004088.1	RefSeq	gene	2175046	2176038	.	-	.	ID=gene2025;Name=Y_RS10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10155;old_locus_tag=y1974
NC_004088.1	Protein Homology	CDS	2175046	2176038	.	-	0	ID=cds1958;Parent=gene2025;Dbxref=Genbank:WP_002210970.1;Name=WP_002210970.1;Note=involved in resistance to antimibial peptides;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_002210970.1;transl_table=11
NC_004088.1	RefSeq	gene	2176038	2176928	.	-	.	ID=gene2026;Name=Y_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10160;old_locus_tag=y1975
NC_004088.1	Protein Homology	CDS	2176038	2176928	.	-	0	ID=cds1959;Parent=gene2026;Dbxref=Genbank:WP_002210971.1;Name=WP_002210971.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_002210971.1;transl_table=11
NC_004088.1	RefSeq	gene	2176915	2177880	.	-	.	ID=gene2027;Name=Y_RS10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10165;old_locus_tag=y1976
NC_004088.1	Protein Homology	CDS	2176915	2177880	.	-	0	ID=cds1960;Parent=gene2027;Dbxref=Genbank:WP_002210972.1;Name=WP_002210972.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_002210972.1;transl_table=11
NC_004088.1	RefSeq	gene	2177877	2179523	.	-	.	ID=gene2028;Name=Y_RS10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10170;old_locus_tag=y1977
NC_004088.1	Protein Homology	CDS	2177877	2179523	.	-	0	ID=cds1961;Parent=gene2028;Dbxref=Genbank:WP_002210973.1;Name=WP_002210973.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_002210973.1;transl_table=11
NC_004088.1	RefSeq	gene	2179659	2179844	.	-	.	ID=gene2029;Name=Y_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10175
NC_004088.1	Protein Homology	CDS	2179659	2179844	.	-	0	ID=cds1962;Parent=gene2029;Dbxref=Genbank:WP_002215913.1;Name=WP_002215913.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215913.1;transl_table=11
NC_004088.1	RefSeq	gene	2180031	2180198	.	+	.	ID=gene2030;Name=Y_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10180
NC_004088.1	Protein Homology	CDS	2180031	2180198	.	+	0	ID=cds1963;Parent=gene2030;Dbxref=Genbank:WP_002430114.1;Name=WP_002430114.1;gbkey=CDS;product=invasin;protein_id=WP_002430114.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2180036	2180757	.	+	.	ID=id261;gbkey=repeat_region
NC_004088.1	RefSeq	region	2180043	2180752	.	+	.	ID=id262;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2180188	2180646	.	+	.	ID=gene2031;Name=Y_RS10185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10185;old_locus_tag=y1978
NC_004088.1	Protein Homology	CDS	2180188	2180646	.	+	0	ID=cds1964;Parent=gene2031;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	2180811	2181839	.	-	.	ID=gene2032;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=Y_RS10190;old_locus_tag=y1979
NC_004088.1	Protein Homology	CDS	2180811	2181839	.	-	0	ID=cds1965;Parent=gene2032;Dbxref=Genbank:WP_002210974.1;Name=WP_002210974.1;Note=transcriptional activator for pspABCE which are induced in response to phage proteins%2C membrane altering stresses%2C and impaired proton expor;gbkey=CDS;gene=pspF;product=transcriptional regulator;protein_id=WP_002210974.1;transl_table=11
NC_004088.1	RefSeq	gene	2182084	2182749	.	+	.	ID=gene2033;Name=Y_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10195;old_locus_tag=y1980
NC_004088.1	Protein Homology	CDS	2182084	2182749	.	+	0	ID=cds1966;Parent=gene2033;Dbxref=Genbank:WP_002210975.1;Name=WP_002210975.1;Note=involved in maintaining membrane potential under membrane stress conditions%3B also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF;gbkey=CDS;product=phage-shock protein;protein_id=WP_002210975.1;transl_table=11
NC_004088.1	RefSeq	gene	2182911	2183138	.	+	.	ID=gene2034;Name=pspB;gbkey=Gene;gene=pspB;gene_biotype=protein_coding;locus_tag=Y_RS10200;old_locus_tag=y1981
NC_004088.1	Protein Homology	CDS	2182911	2183138	.	+	0	ID=cds1967;Parent=gene2034;Dbxref=Genbank:WP_002210976.1;Name=WP_002210976.1;Note=DNA-binding transcriptional regulator%3B acts together with PspC to induce psp operon during infection with phage%2C exposure to ethanol or osmotic shock%3B forms a complex with PspA and C%3B PspC is required for PspAB binding;gbkey=CDS;gene=pspB;product=phage shock protein B;protein_id=WP_002210976.1;transl_table=11
NC_004088.1	RefSeq	gene	2183138	2183497	.	+	.	ID=gene2035;Name=Y_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10205;old_locus_tag=y1982
NC_004088.1	Protein Homology	CDS	2183138	2183497	.	+	0	ID=cds1968;Parent=gene2035;Dbxref=Genbank:WP_002210977.1;Name=WP_002210977.1;Note=with PsbB forms toxin/antitoxin pair%3B activates the psp operon in response to phage infection%2C exposure to ethanol or osmotic shock;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210977.1;transl_table=11
NC_004088.1	RefSeq	gene	2183585	2183824	.	+	.	ID=gene2036;Name=Y_RS10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10210;old_locus_tag=y1983
NC_004088.1	Protein Homology	CDS	2183585	2183824	.	+	0	ID=cds1969;Parent=gene2036;Dbxref=Genbank:WP_002386267.1;Name=WP_002386267.1;gbkey=CDS;product=phage-shock protein;protein_id=WP_002386267.1;transl_table=11
NC_004088.1	RefSeq	gene	2183805	2185202	.	+	.	ID=gene2037;Name=Y_RS10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10215;old_locus_tag=y1984
NC_004088.1	Protein Homology	CDS	2183805	2185202	.	+	0	ID=cds1970;Parent=gene2037;Dbxref=Genbank:WP_002210979.1;Name=WP_002210979.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210979.1;transl_table=11
NC_004088.1	RefSeq	gene	2185199	2186260	.	+	.	ID=gene2038;Name=Y_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10220;old_locus_tag=y1985
NC_004088.1	Protein Homology	CDS	2185199	2186260	.	+	0	ID=cds1971;Parent=gene2038;Dbxref=Genbank:WP_002210980.1;Name=WP_002210980.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210980.1;transl_table=11
NC_004088.1	RefSeq	gene	2186270	2186728	.	-	.	ID=gene2039;Name=Y_RS10225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10225
NC_004088.1	Protein Homology	CDS	2186270	2186728	.	-	0	ID=cds1972;Parent=gene2039;Dbxref=Genbank:WP_002210981.1;Name=WP_002210981.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210981.1;transl_table=11
NC_004088.1	RefSeq	gene	2186790	2187236	.	-	.	ID=gene2040;Name=Y_RS10230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10230;old_locus_tag=y1987
NC_004088.1	Protein Homology	CDS	2186790	2187236	.	-	0	ID=cds1973;Parent=gene2040;Dbxref=Genbank:WP_002210982.1;Name=WP_002210982.1;gbkey=CDS;product=TIGR02293 family toxin-antitoxin system antitoxin component;protein_id=WP_002210982.1;transl_table=11
NC_004088.1	RefSeq	gene	2187572	2189149	.	+	.	ID=gene2041;Name=Y_RS10235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10235;old_locus_tag=y1988
NC_004088.1	Protein Homology	CDS	2187572	2189149	.	+	0	ID=cds1974;Parent=gene2041;Dbxref=Genbank:WP_002210983.1;Name=WP_002210983.1;Note=regulates genes involved in the biosynthesis and transport of aromatic amino acids;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210983.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2189186	2189908	.	+	.	ID=id263;gbkey=repeat_region
NC_004088.1	RefSeq	region	2189190	2189899	.	-	.	ID=id264;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2189296	2189754	.	-	.	ID=gene2042;Name=Y_RS10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10240;old_locus_tag=y1989
NC_004088.1	Protein Homology	CDS	2189296	2189754	.	-	0	ID=cds1975;Parent=gene2042;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	2190007	2190510	.	-	.	ID=gene2043;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=Y_RS10245;old_locus_tag=y1990
NC_004088.1	Protein Homology	CDS	2190007	2190510	.	-	0	ID=cds1976;Parent=gene2043;Dbxref=Genbank:WP_002210984.1;Name=WP_002210984.1;Note=antioxidant activity%3B thioredoxin-dependent thiol peroxidase%3B forms homodimers in solution%3B shows substrate specificity to alkyl hydroperoxides%3B periplasmic protein;gbkey=CDS;gene=tpx;product=thiol peroxidase;protein_id=WP_002210984.1;transl_table=11
NC_004088.1	RefSeq	gene	2190673	2191647	.	+	.	ID=gene2044;Name=Y_RS10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10250;old_locus_tag=y1991
NC_004088.1	Protein Homology	CDS	2190673	2191647	.	+	0	ID=cds1977;Parent=gene2044;Dbxref=Genbank:WP_002210985.1;Name=WP_002210985.1;Note=catalyzes the epimerization of L-alanyl-D-glutamate to L-alanyl-L-glutamate;gbkey=CDS;product=mandelate racemase;protein_id=WP_002210985.1;transl_table=11
NC_004088.1	RefSeq	gene	2191689	2192396	.	-	.	ID=gene2045;Name=Y_RS10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10255;old_locus_tag=y1992
NC_004088.1	Protein Homology	CDS	2191689	2192396	.	-	0	ID=cds1978;Parent=gene2045;Dbxref=Genbank:WP_002220315.1;Name=WP_002220315.1;gbkey=CDS;product=murein peptide amidase A;protein_id=WP_002220315.1;transl_table=11
NC_004088.1	RefSeq	gene	2192837	2194453	.	+	.	ID=gene2046;Name=Y_RS10260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10260;old_locus_tag=y1993
NC_004088.1	Protein Homology	CDS	2192837	2194453	.	+	0	ID=cds1979;Parent=gene2046;Dbxref=Genbank:WP_002210987.1;Name=WP_002210987.1;Note=is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_002210987.1;transl_table=11
NC_004088.1	RefSeq	gene	2194696	2195679	.	+	.	ID=gene2047;Name=zntB;gbkey=Gene;gene=zntB;gene_biotype=protein_coding;locus_tag=Y_RS10265;old_locus_tag=y1994
NC_004088.1	Protein Homology	CDS	2194696	2195679	.	+	0	ID=cds1980;Parent=gene2047;Dbxref=Genbank:WP_002227906.1;Name=WP_002227906.1;gbkey=CDS;gene=zntB;product=zinc transporter ZntB;protein_id=WP_002227906.1;transl_table=11
NC_004088.1	RefSeq	gene	2196053	2196892	.	-	.	ID=gene2048;Name=Y_RS10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10270;old_locus_tag=y1995
NC_004088.1	Protein Homology	CDS	2196053	2196892	.	-	0	ID=cds1981;Parent=gene2048;Dbxref=Genbank:WP_002210990.1;Name=WP_002210990.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210990.1;transl_table=11
NC_004088.1	RefSeq	gene	2197204	2198208	.	-	.	ID=gene2049;Name=Y_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10275;old_locus_tag=y1996
NC_004088.1	Protein Homology	CDS	2197204	2198208	.	-	0	ID=cds1982;Parent=gene2049;Dbxref=Genbank:WP_002210991.1;Name=WP_002210991.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_002210991.1;transl_table=11
NC_004088.1	RefSeq	gene	2198479	2199420	.	-	.	ID=gene2050;Name=Y_RS10280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10280;old_locus_tag=y1998
NC_004088.1	Protein Homology	CDS	2198479	2199420	.	-	0	ID=cds1983;Parent=gene2050;Dbxref=Genbank:WP_002210992.1;Name=WP_002210992.1;Note=TtcA%3B YdaO%3B catalyzes the thiolation of cytosine 32 in specific tRNAs%3B forms 2-thiocytidine (s(2)C);gbkey=CDS;product=tRNA 2-thiocytidine biosynthesis protein TtcA;protein_id=WP_002210992.1;transl_table=11
NC_004088.1	RefSeq	gene	2199695	2203228	.	-	.	ID=gene2051;Name=Y_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10285;old_locus_tag=y1999
NC_004088.1	Protein Homology	CDS	2199695	2203228	.	-	0	ID=cds1984;Parent=gene2051;Dbxref=Genbank:WP_002210993.1;Name=WP_002210993.1;gbkey=CDS;product=pyruvate-flavodoxin oxidoreductase;protein_id=WP_002210993.1;transl_table=11
NC_004088.1	RefSeq	gene	2203707	2204039	.	+	.	ID=gene2052;Name=Y_RS10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10290;old_locus_tag=y2000
NC_004088.1	Protein Homology	CDS	2203707	2204039	.	+	0	ID=cds1985;Parent=gene2052;Dbxref=Genbank:WP_002210994.1;Name=WP_002210994.1;gbkey=CDS;product=multidrug DMT transporter;protein_id=WP_002210994.1;transl_table=11
NC_004088.1	RefSeq	gene	2204099	2204758	.	-	.	ID=gene2053;Name=Y_RS10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10295;old_locus_tag=y2001
NC_004088.1	Protein Homology	CDS	2204099	2204758	.	-	0	ID=cds1986;Parent=gene2053;Dbxref=Genbank:WP_002210995.1;Name=WP_002210995.1;gbkey=CDS;product=methyltransferase;protein_id=WP_002210995.1;transl_table=11
NC_004088.1	RefSeq	gene	2205073	2205384	.	+	.	ID=gene2054;Name=Y_RS10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10300
NC_004088.1	Protein Homology	CDS	2205073	2205384	.	+	0	ID=cds1987;Parent=gene2054;Dbxref=Genbank:WP_002210996.1;Name=WP_002210996.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210996.1;transl_table=11
NC_004088.1	RefSeq	gene	2205442	2205894	.	-	.	ID=gene2055;Name=Y_RS10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10305;old_locus_tag=y2003
NC_004088.1	Protein Homology	CDS	2205442	2205894	.	-	0	ID=cds1988;Parent=gene2055;Dbxref=Genbank:WP_002214605.1;Name=WP_002214605.1;gbkey=CDS;product=heat-inducible protein;protein_id=WP_002214605.1;transl_table=11
NC_004088.1	RefSeq	gene	2205964	2206956	.	-	.	ID=gene2056;Name=Y_RS10310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10310;old_locus_tag=y2004
NC_004088.1	Protein Homology	CDS	2205964	2206956	.	-	0	ID=cds1989;Parent=gene2056;Dbxref=Genbank:WP_002210998.1;Name=WP_002210998.1;Note=fermentative%3B catalyzes the formationof pyruvate from lactate;gbkey=CDS;product=lactate dehydrogenase;protein_id=WP_002210998.1;transl_table=11
NC_004088.1	RefSeq	gene	2207222	2209918	.	+	.	ID=gene2057;Name=Y_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10315;old_locus_tag=y2005
NC_004088.1	Protein Homology	CDS	2207222	2209918	.	+	0	ID=cds1990;Parent=gene2057;Dbxref=Genbank:WP_002210999.1;Name=WP_002210999.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210999.1;transl_table=11
NC_004088.1	RefSeq	gene	2209915	2210109	.	+	.	ID=gene2058;Name=Y_RS10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10320
NC_004088.1	Protein Homology	CDS	2209915	2210109	.	+	0	ID=cds1991;Parent=gene2058;Dbxref=Genbank:WP_002211000.1;Name=WP_002211000.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211000.1;transl_table=11
NC_004088.1	RefSeq	gene	2210119	2210490	.	+	.	ID=gene2059;Name=Y_RS10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10325;old_locus_tag=y2007
NC_004088.1	Protein Homology	CDS	2210119	2210490	.	+	0	ID=cds1992;Parent=gene2059;Dbxref=Genbank:WP_002211001.1;Name=WP_002211001.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211001.1;transl_table=11
NC_004088.1	RefSeq	gene	2210709	2212100	.	-	.	ID=gene2060;Name=Y_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10330;old_locus_tag=y2008
NC_004088.1	Protein Homology	CDS	2210709	2212100	.	-	0	ID=cds1993;Parent=gene2060;Dbxref=Genbank:WP_002211002.1;Name=WP_002211002.1;gbkey=CDS;product=D-arabinitol 4-dehydrogenase;protein_id=WP_002211002.1;transl_table=11
NC_004088.1	RefSeq	gene	2212310	2213266	.	+	.	ID=gene2061;Name=Y_RS10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10335;old_locus_tag=y2009
NC_004088.1	Protein Homology	CDS	2212310	2213266	.	+	0	ID=cds1994;Parent=gene2061;Dbxref=Genbank:WP_002211003.1;Name=WP_002211003.1;gbkey=CDS;product=DNA-binding transcriptional regulator;protein_id=WP_002211003.1;transl_table=11
NC_004088.1	RefSeq	gene	2213387	2213992	.	-	.	ID=gene2062;Name=Y_RS10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10340;old_locus_tag=y2010
NC_004088.1	Protein Homology	CDS	2213387	2213992	.	-	0	ID=cds1995;Parent=gene2062;Dbxref=Genbank:WP_002211004.1;Name=WP_002211004.1;Note=FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds;gbkey=CDS;product=FMN-dependent NADH-azoreductase;protein_id=WP_002211004.1;transl_table=11
NC_004088.1	RefSeq	gene	2214460	2218302	.	+	.	ID=gene2063;Name=Y_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10345;old_locus_tag=y2011
NC_004088.1	Protein Homology	CDS	2214460	2218302	.	+	0	ID=cds1996;Parent=gene2063;Dbxref=Genbank:WP_002214608.1;Name=WP_002214608.1;Note=involved in the post-transcriptional processing of the daa operon mRNA%2C which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain;gbkey=CDS;product=ATP-dependent RNA helicase HrpA;protein_id=WP_002214608.1;transl_table=11
NC_004088.1	RefSeq	gene	2218641	2218970	.	+	.	ID=gene2064;Name=Y_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10350
NC_004088.1	Protein Homology	CDS	2218641	2218970	.	+	0	ID=cds1997;Parent=gene2064;Dbxref=Genbank:WP_002214609.1;Name=WP_002214609.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214609.1;transl_table=11
NC_004088.1	RefSeq	gene	2218967	2219290	.	+	.	ID=gene2065;Name=Y_RS10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10355;old_locus_tag=y2012
NC_004088.1	Protein Homology	CDS	2218967	2219290	.	+	0	ID=cds1998;Parent=gene2065;Dbxref=Genbank:WP_002211007.1;Name=WP_002211007.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002211007.1;transl_table=11
NC_004088.1	RefSeq	gene	2219346	2220182	.	-	.	ID=gene2066;Name=Y_RS10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10360;old_locus_tag=y2013
NC_004088.1	Protein Homology	CDS	2219346	2220182	.	-	0	ID=cds1999;Parent=gene2066;Dbxref=Genbank:WP_002211008.1;Name=WP_002211008.1;gbkey=CDS;product=peptidase;protein_id=WP_002211008.1;transl_table=11
NC_004088.1	RefSeq	gene	2220516	2220824	.	-	.	ID=gene2067;Name=Y_RS10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10365;old_locus_tag=y2014
NC_004088.1	Protein Homology	CDS	2220516	2220824	.	-	0	ID=cds2000;Parent=gene2067;Dbxref=Genbank:WP_002230914.1;Name=WP_002230914.1;gbkey=CDS;product=acid-shock protein;protein_id=WP_002230914.1;transl_table=11
NC_004088.1	RefSeq	gene	2220821	2221033	.	-	.	ID=gene2068;Name=Y_RS10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10370
NC_004088.1	Protein Homology	CDS	2220821	2221033	.	-	0	ID=cds2001;Parent=gene2068;Dbxref=Genbank:WP_002214613.1;Name=WP_002214613.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214613.1;transl_table=11
NC_004088.1	RefSeq	gene	2221428	2221963	.	+	.	ID=gene2069;Name=Y_RS10375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS10375;old_locus_tag=y2016;pseudo=true
NC_004088.1	Protein Homology	CDS	2221428	2221963	.	+	0	ID=cds2002;Parent=gene2069;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cytochrome B;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2222149	2222307	.	+	.	ID=gene2070;Name=Y_RS10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10380
NC_004088.1	Protein Homology	CDS	2222149	2222307	.	+	0	ID=cds2003;Parent=gene2070;Dbxref=Genbank:WP_002214618.1;Name=WP_002214618.1;gbkey=CDS;product=invertase;protein_id=WP_002214618.1;transl_table=11
NC_004088.1	RefSeq	gene	2222411	2222767	.	-	.	ID=gene2071;Name=Y_RS10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10385;old_locus_tag=y2019
NC_004088.1	Protein Homology	CDS	2222411	2222767	.	-	0	ID=cds2004;Parent=gene2071;Dbxref=Genbank:WP_002227910.1;Name=WP_002227910.1;gbkey=CDS;product=DNA gyrase;protein_id=WP_002227910.1;transl_table=11
NC_004088.1	RefSeq	gene	2222770	2225394	.	-	.	ID=gene2072;Name=Y_RS10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10390;old_locus_tag=y2020
NC_004088.1	Protein Homology	CDS	2222770	2225394	.	-	0	ID=cds2005;Parent=gene2072;Dbxref=Genbank:WP_002211013.1;Name=WP_002211013.1;gbkey=CDS;product=toxin TccC3;protein_id=WP_002211013.1;transl_table=11
NC_004088.1	RefSeq	gene	2226204	2226374	.	+	.	ID=gene2073;Name=Y_RS10395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10395
NC_004088.1	Protein Homology	CDS	2226204	2226374	.	+	0	ID=cds2006;Parent=gene2073;Dbxref=Genbank:WP_025470768.1;Name=WP_025470768.1;gbkey=CDS;product=transposase;protein_id=WP_025470768.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2226215	2228388	.	+	.	ID=id265;gbkey=repeat_region
NC_004088.1	RefSeq	region	2226219	2226433	.	+	.	ID=id266;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	region	2226433	2228386	.	-	.	ID=id267;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2226499	2227278	.	-	.	ID=gene2074;Name=Y_RS10400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10400;old_locus_tag=y2021
NC_004088.1	Protein Homology	CDS	2226499	2227278	.	-	0	ID=cds2007;Parent=gene2074;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	2227278	2228300	.	-	.	ID=gene2075;Name=Y_RS10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10405;old_locus_tag=y2022
NC_004088.1	Protein Homology	CDS	2227278	2228300	.	-	0	ID=cds2008;Parent=gene2075;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	2228840	2231515	.	-	.	ID=gene2076;Name=Y_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10410;old_locus_tag=y2023
NC_004088.1	Protein Homology	CDS	2228840	2231515	.	-	0	ID=cds2009;Parent=gene2076;Dbxref=Genbank:WP_002223614.1;Name=WP_002223614.1;gbkey=CDS;product=acetaldehyde dehydrogenase;protein_id=WP_002223614.1;transl_table=11
NC_004088.1	RefSeq	gene	2232322	2232966	.	+	.	ID=gene2077;Name=Y_RS10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10415;old_locus_tag=y2025
NC_004088.1	Protein Homology	CDS	2232322	2232966	.	+	0	ID=cds2010;Parent=gene2077;Dbxref=Genbank:WP_002210656.1;Name=WP_002210656.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210656.1;transl_table=11
NC_004088.1	RefSeq	gene	2233804	2235441	.	+	.	ID=gene2078;Name=Y_RS10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10420;old_locus_tag=y2026
NC_004088.1	Protein Homology	CDS	2233804	2235441	.	+	0	ID=cds2011;Parent=gene2078;Dbxref=Genbank:WP_002218177.1;Name=WP_002218177.1;Note=is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_002218177.1;transl_table=11
NC_004088.1	RefSeq	gene	2235528	2236448	.	+	.	ID=gene2079;Name=oppB;gbkey=Gene;gene=oppB;gene_biotype=protein_coding;locus_tag=Y_RS10425;old_locus_tag=y2027
NC_004088.1	Protein Homology	CDS	2235528	2236448	.	+	0	ID=cds2012;Parent=gene2079;Dbxref=Genbank:WP_002210654.1;Name=WP_002210654.1;gbkey=CDS;gene=oppB;product=peptide ABC transporter permease;protein_id=WP_002210654.1;transl_table=11
NC_004088.1	RefSeq	gene	2236464	2237372	.	+	.	ID=gene2080;Name=Y_RS10430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10430;old_locus_tag=y2028
NC_004088.1	Protein Homology	CDS	2236464	2237372	.	+	0	ID=cds2013;Parent=gene2080;Dbxref=Genbank:WP_025470761.1;Name=WP_025470761.1;Note=with OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_025470761.1;transl_table=11
NC_004088.1	RefSeq	gene	2237384	2238385	.	+	.	ID=gene2081;Name=oppD;gbkey=Gene;gene=oppD;gene_biotype=protein_coding;locus_tag=Y_RS10435;old_locus_tag=y2029
NC_004088.1	Protein Homology	CDS	2237384	2238385	.	+	0	ID=cds2014;Parent=gene2081;Dbxref=Genbank:WP_002210652.1;Name=WP_002210652.1;gbkey=CDS;gene=oppD;product=peptide ABC transporter ATP-binding protein;protein_id=WP_002210652.1;transl_table=11
NC_004088.1	RefSeq	gene	2238382	2239383	.	+	.	ID=gene2082;Name=Y_RS10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10440;old_locus_tag=y2030
NC_004088.1	Protein Homology	CDS	2238382	2239383	.	+	0	ID=cds2015;Parent=gene2082;Dbxref=Genbank:WP_002210651.1;Name=WP_002210651.1;Note=with OppABCD is involved in the transport of oligopeptides%3B OppF and OppD are ATP-binding proteins;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_002210651.1;transl_table=11
NC_004088.1	RefSeq	gene	2239432	2239647	.	-	.	ID=gene2083;Name=Y_RS10445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10445
NC_004088.1	GeneMarkS+	CDS	2239432	2239647	.	-	0	ID=cds2016;Parent=gene2083;Dbxref=Genbank:WP_015683825.1;Name=WP_015683825.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_015683825.1;transl_table=11
NC_004088.1	RefSeq	gene	2239944	2240159	.	+	.	ID=gene2084;Name=Y_RS10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10450;old_locus_tag=y2031
NC_004088.1	Protein Homology	CDS	2239944	2240159	.	+	0	ID=cds2017;Parent=gene2084;Dbxref=Genbank:WP_002210650.1;Name=WP_002210650.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210650.1;transl_table=11
NC_004088.1	RefSeq	gene	2240458	2240781	.	-	.	ID=gene2085;Name=Y_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10455;old_locus_tag=y2032
NC_004088.1	Protein Homology	CDS	2240458	2240781	.	-	0	ID=cds2018;Parent=gene2085;Dbxref=Genbank:WP_002210649.1;Name=WP_002210649.1;Note=highly acidic protein%3B the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi)%3B binds heat-unstable protein (HU-alpha) which is a histone-like protein;gbkey=CDS;product=dsDNA-mimic protein;protein_id=WP_002210649.1;transl_table=11
NC_004088.1	RefSeq	gene	2240946	2242406	.	-	.	ID=gene2086;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=Y_RS10460;old_locus_tag=y2033
NC_004088.1	Protein Homology	CDS	2240946	2242406	.	-	0	ID=cds2019;Parent=gene2086;Dbxref=Genbank:WP_002210648.1;Name=WP_002210648.1;Note=catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol);gbkey=CDS;gene=cls;product=cardiolipin synthase;protein_id=WP_002210648.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2242541	2242715	.	+	.	ID=id268;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2243453	2243992	.	+	.	ID=gene2087;Name=Y_RS10465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10465;old_locus_tag=y2034
NC_004088.1	Protein Homology	CDS	2243453	2243992	.	+	0	ID=cds2020;Parent=gene2087;Dbxref=Genbank:WP_002210646.1;Name=WP_002210646.1;gbkey=CDS;product=attachment invasion locus protein;protein_id=WP_002210646.1;transl_table=11
NC_004088.1	RefSeq	gene	2244213	2244476	.	+	.	ID=gene2088;Name=Y_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10470;old_locus_tag=y5001
NC_004088.1	Protein Homology	CDS	2244213	2244476	.	+	0	ID=cds2021;Parent=gene2088;Dbxref=Genbank:WP_002210644.1;Name=WP_002210644.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210644.1;transl_table=11
NC_004088.1	RefSeq	gene	2244592	2244837	.	-	.	ID=gene2089;Name=Y_RS10475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10475
NC_004088.1	Protein Homology	CDS	2244592	2244837	.	-	0	ID=cds2022;Parent=gene2089;Dbxref=Genbank:WP_002217646.1;Name=WP_002217646.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217646.1;transl_table=11
NC_004088.1	RefSeq	gene	2245060	2245356	.	-	.	ID=gene2090;Name=Y_RS10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10480;old_locus_tag=y2036
NC_004088.1	Protein Homology	CDS	2245060	2245356	.	-	0	ID=cds2023;Parent=gene2090;Dbxref=Genbank:WP_002210643.1;Name=WP_002210643.1;Note=unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210643.1;transl_table=11
NC_004088.1	RefSeq	gene	2245657	2246415	.	+	.	ID=gene2091;Name=Y_RS10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10485;old_locus_tag=y2037
NC_004088.1	Protein Homology	CDS	2245657	2246415	.	+	0	ID=cds2024;Parent=gene2091;Dbxref=Genbank:WP_002210642.1;Name=WP_002210642.1;gbkey=CDS;product=transporter TonB;protein_id=WP_002210642.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2246414	2247731	.	+	.	ID=id269;gbkey=repeat_region
NC_004088.1	RefSeq	region	2246416	2247730	.	-	.	ID=id270;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2246451	2247659	.	-	.	ID=gene2092;Name=Y_RS10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10490;old_locus_tag=y2038
NC_004088.1	Protein Homology	CDS	2246451	2247659	.	-	0	ID=cds2025;Parent=gene2092;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2247807	2248256	.	-	.	ID=gene2093;Name=Y_RS10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10495;old_locus_tag=y2039
NC_004088.1	Protein Homology	CDS	2247807	2248256	.	-	0	ID=cds2026;Parent=gene2093;Dbxref=Genbank:WP_002210641.1;Name=WP_002210641.1;gbkey=CDS;product=acyl-CoA thioester hydrolase;protein_id=WP_002210641.1;transl_table=11
NC_004088.1	RefSeq	gene	2248336	2248878	.	-	.	ID=gene2094;Name=Y_RS10500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10500;old_locus_tag=y2040
NC_004088.1	Protein Homology	CDS	2248336	2248878	.	-	0	ID=cds2027;Parent=gene2094;Dbxref=Genbank:WP_002210640.1;Name=WP_002210640.1;Note=Involved in cell division%3B probably involved in intracellular septation;gbkey=CDS;product=intracellular septation protein A;protein_id=WP_002210640.1;transl_table=11
NC_004088.1	RefSeq	gene	2249109	2250191	.	+	.	ID=gene2095;Name=Y_RS10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10505
NC_004088.1	Protein Homology	CDS	2249109	2250191	.	+	0	ID=cds2028;Parent=gene2095;Dbxref=Genbank:WP_002215978.1;Name=WP_002215978.1;gbkey=CDS;product=sulfate transporter;protein_id=WP_002215978.1;transl_table=11
NC_004088.1	RefSeq	gene	2250223	2250843	.	+	.	ID=gene2096;Name=Y_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10510
NC_004088.1	Protein Homology	CDS	2250223	2250843	.	+	0	ID=cds2029;Parent=gene2096;Dbxref=Genbank:WP_002215979.1;Name=WP_002215979.1;gbkey=CDS;product=sulfate permease;protein_id=WP_002215979.1;transl_table=11
NC_004088.1	RefSeq	gene	2250964	2251734	.	-	.	ID=gene2097;Name=Y_RS10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10515;old_locus_tag=y2042
NC_004088.1	Protein Homology	CDS	2250964	2251734	.	-	0	ID=cds2030;Parent=gene2097;Dbxref=Genbank:WP_002210639.1;Name=WP_002210639.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210639.1;transl_table=11
NC_004088.1	RefSeq	gene	2251896	2252111	.	+	.	ID=gene2098;Name=Y_RS10520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10520;old_locus_tag=y2043
NC_004088.1	Protein Homology	CDS	2251896	2252111	.	+	0	ID=cds2031;Parent=gene2098;Dbxref=Genbank:WP_002210638.1;Name=WP_002210638.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210638.1;transl_table=11
NC_004088.1	RefSeq	gene	2252208	2252855	.	+	.	ID=gene2099;Name=Y_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10525;old_locus_tag=y2044
NC_004088.1	Protein Homology	CDS	2252208	2252855	.	+	0	ID=cds2032;Parent=gene2099;Dbxref=Genbank:WP_011055515.1;Name=WP_011055515.1;Note=receptor for colicin S4;gbkey=CDS;product=outer membrane protein W;protein_id=WP_011055515.1;transl_table=11
NC_004088.1	RefSeq	gene	2253002	2253316	.	-	.	ID=gene2100;Name=Y_RS10530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10530;old_locus_tag=y2045
NC_004088.1	Protein Homology	CDS	2253002	2253316	.	-	0	ID=cds2033;Parent=gene2100;Dbxref=Genbank:WP_002210636.1;Name=WP_002210636.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002210636.1;transl_table=11
NC_004088.1	RefSeq	gene	2253659	2254466	.	-	.	ID=gene2101;Name=Y_RS10535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS10535;old_locus_tag=y2047;pseudo=true
NC_004088.1	Protein Homology	CDS	2253659	2254466	.	-	0	ID=cds2034;Parent=gene2101;exception=annotated by transcript or proteomic data;gbkey=CDS;product=tryptophan synthase subunit alpha;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2254466	2255656	.	-	.	ID=gene2102;Name=Y_RS10540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10540;old_locus_tag=y2048
NC_004088.1	Protein Homology	CDS	2254466	2255656	.	-	0	ID=cds2035;Parent=gene2102;Dbxref=Genbank:WP_002210633.1;Name=WP_002210633.1;Note=catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate;gbkey=CDS;product=tryptophan synthase subunit beta;protein_id=WP_002210633.1;transl_table=11
NC_004088.1	RefSeq	gene	2255813	2257240	.	-	.	ID=gene2103;Name=Y_RS10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10545;old_locus_tag=y2049
NC_004088.1	Protein Homology	CDS	2255813	2257240	.	-	0	ID=cds2036;Parent=gene2103;Dbxref=Genbank:WP_002210632.1;Name=WP_002210632.1;Note=monomeric bifunctional protein%3B functions in tryptophan biosynthesis pathway%3B phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate;gbkey=CDS;product=tryptophan biosynthesis protein TrpCF;protein_id=WP_002210632.1;transl_table=11
NC_004088.1	RefSeq	gene	2257244	2258242	.	-	.	ID=gene2104;Name=Y_RS10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10550
NC_004088.1	Protein Homology	CDS	2257244	2258242	.	-	0	ID=cds2037;Parent=gene2104;Dbxref=Genbank:WP_002215980.1;Name=WP_002215980.1;gbkey=CDS;product=anthranilate phosphoribosyltransferase;protein_id=WP_002215980.1;transl_table=11
NC_004088.1	RefSeq	gene	2258257	2258835	.	-	.	ID=gene2105;Name=Y_RS10555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10555
NC_004088.1	Protein Homology	CDS	2258257	2258835	.	-	0	ID=cds2038;Parent=gene2105;Dbxref=Genbank:WP_002215981.1;Name=WP_002215981.1;gbkey=CDS;product=Anthranilate synthase component 2;protein_id=WP_002215981.1;transl_table=11
NC_004088.1	RefSeq	gene	2258835	2260397	.	-	.	ID=gene2106;Name=Y_RS10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10560;old_locus_tag=y2051
NC_004088.1	Protein Homology	CDS	2258835	2260397	.	-	0	ID=cds2039;Parent=gene2106;Dbxref=Genbank:WP_002228454.1;Name=WP_002228454.1;Note=with component II%2C the glutamine amidotransferase%2C catalyzes the formation of anthranilate from chorismate and glutamine;gbkey=CDS;product=anthranilate synthase subunit I;protein_id=WP_002228454.1;transl_table=11
NC_004088.1	RefSeq	gene	2260516	2260578	.	-	.	ID=gene2107;Name=Y_RS10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10565
NC_004088.1	Protein Homology	CDS	2260516	2260578	.	-	0	ID=cds2040;Parent=gene2107;Dbxref=Genbank:WP_002227930.1;Name=WP_002227930.1;gbkey=CDS;product=trp operon leader peptide;protein_id=WP_002227930.1;transl_table=11
NC_004088.1	RefSeq	gene	2260607	2260735	.	-	.	ID=gene2108;Name=Y_RS10570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10570
NC_004088.1	Protein Homology	CDS	2260607	2260735	.	-	0	ID=cds2041;Parent=gene2108;Dbxref=Genbank:WP_002215982.1;Name=WP_002215982.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215982.1;transl_table=11
NC_004088.1	RefSeq	gene	2260816	2261751	.	+	.	ID=gene2109;Name=Y_RS10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10575;old_locus_tag=y2052
NC_004088.1	Protein Homology	CDS	2260816	2261751	.	+	0	ID=cds2042;Parent=gene2109;Dbxref=Genbank:WP_002210629.1;Name=WP_002210629.1;gbkey=CDS;product=S-adenosylmethionine tRNA ribosyltransferase;protein_id=WP_002210629.1;transl_table=11
NC_004088.1	RefSeq	gene	2261768	2262388	.	+	.	ID=gene2110;Name=Y_RS10580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10580;old_locus_tag=y2053
NC_004088.1	Protein Homology	CDS	2261768	2262388	.	+	0	ID=cds2043;Parent=gene2110;Dbxref=Genbank:WP_002210628.1;Name=WP_002210628.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210628.1;transl_table=11
NC_004088.1	RefSeq	gene	2262752	2263786	.	+	.	ID=gene2111;Name=Y_RS10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10585;old_locus_tag=y2054
NC_004088.1	Protein Homology	CDS	2262752	2263786	.	+	0	ID=cds2044;Parent=gene2111;Dbxref=Genbank:WP_002210627.1;Name=WP_002210627.1;gbkey=CDS;product=23S rRNA pseudouridylate synthase B;protein_id=WP_002210627.1;transl_table=11
NC_004088.1	RefSeq	gene	2263909	2264499	.	-	.	ID=gene2112;Name=Y_RS10590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10590;old_locus_tag=y2055
NC_004088.1	Protein Homology	CDS	2263909	2264499	.	-	0	ID=cds2045;Parent=gene2112;Dbxref=Genbank:WP_002210626.1;Name=WP_002210626.1;Note=catalyzes the formation of adenosylcobalamide from cobinamide and the formation of coenzyme B12 from cob(I)alamin;gbkey=CDS;product=cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase;protein_id=WP_002210626.1;transl_table=11
NC_004088.1	RefSeq	gene	2264516	2265277	.	-	.	ID=gene2113;Name=Y_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10595;old_locus_tag=y2056
NC_004088.1	Protein Homology	CDS	2264516	2265277	.	-	0	ID=cds2046;Parent=gene2113;Dbxref=Genbank:WP_002210625.1;Name=WP_002210625.1;gbkey=CDS;product=oxoacyl-ACP reductase;protein_id=WP_002210625.1;transl_table=11
NC_004088.1	RefSeq	gene	2265449	2266495	.	+	.	ID=gene2114;Name=Y_RS10600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10600;old_locus_tag=y2057
NC_004088.1	Protein Homology	CDS	2265449	2266495	.	+	0	ID=cds2047;Parent=gene2114;Dbxref=Genbank:WP_002210624.1;Name=WP_002210624.1;Note=multicopy suppressor of htrA(degP);gbkey=CDS;product=peptidase;protein_id=WP_002210624.1;transl_table=11
NC_004088.1	RefSeq	gene	2266614	2266865	.	-	.	ID=gene2115;Name=Y_RS10605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10605;old_locus_tag=y2058
NC_004088.1	Protein Homology	CDS	2266614	2266865	.	-	0	ID=cds2048;Parent=gene2115;Dbxref=Genbank:WP_002210623.1;Name=WP_002210623.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210623.1;transl_table=11
NC_004088.1	RefSeq	gene	2266958	2267257	.	+	.	ID=gene2116;Name=Y_RS10610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10610
NC_004088.1	Protein Homology	CDS	2266958	2267257	.	+	0	ID=cds2049;Parent=gene2116;Dbxref=Genbank:WP_002228458.1;Name=WP_002228458.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228458.1;transl_table=11
NC_004088.1	RefSeq	gene	2267284	2269899	.	+	.	ID=gene2117;Name=Y_RS10615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10615;old_locus_tag=y2060
NC_004088.1	Protein Homology	CDS	2267284	2269899	.	+	0	ID=cds2050;Parent=gene2117;Dbxref=Genbank:WP_002210622.1;Name=WP_002210622.1;Note=catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity;gbkey=CDS;product=DNA topoisomerase I;protein_id=WP_002210622.1;transl_table=11
NC_004088.1	RefSeq	gene	2270296	2271270	.	+	.	ID=gene2118;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=Y_RS10620;old_locus_tag=y2061
NC_004088.1	Protein Homology	CDS	2270296	2271270	.	+	0	ID=cds2051;Parent=gene2118;Dbxref=Genbank:WP_002210621.1;Name=WP_002210621.1;Note=LysR-type transcriptional regulator%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon%3B autoregulates expression%3B crystal structure of Klebsiella aerogenes showed tetramer formation;gbkey=CDS;gene=cysB;product=CysB family transcriptional regulator;protein_id=WP_002210621.1;transl_table=11
NC_004088.1	RefSeq	gene	2271606	2272463	.	+	.	ID=gene2119;Name=Y_RS10625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10625;old_locus_tag=y2062
NC_004088.1	Protein Homology	CDS	2271606	2272463	.	+	0	ID=cds2052;Parent=gene2119;Dbxref=Genbank:WP_002210620.1;Name=WP_002210620.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210620.1;transl_table=11
NC_004088.1	RefSeq	gene	2272827	2275499	.	+	.	ID=gene2120;Name=Y_RS10630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10630;old_locus_tag=y2063
NC_004088.1	Protein Homology	CDS	2272827	2275499	.	+	0	ID=cds2053;Parent=gene2120;Dbxref=Genbank:WP_002215187.1;Name=WP_002215187.1;Note=Catalyzes the conversion of citrate to isocitrate;gbkey=CDS;product=aconitate hydratase;protein_id=WP_002215187.1;transl_table=11
NC_004088.1	RefSeq	gene	2275663	2276253	.	-	.	ID=gene2121;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=Y_RS10635;old_locus_tag=y2064
NC_004088.1	Protein Homology	CDS	2275663	2276253	.	-	0	ID=cds2054;Parent=gene2121;Dbxref=Genbank:WP_002227926.1;Name=WP_002227926.1;Note=catalyzes the conversion of GTP to formate and 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate;gbkey=CDS;gene=ribA;product=GTP cyclohydrolase-2;protein_id=WP_002227926.1;transl_table=11
NC_004088.1	RefSeq	gene	2276759	2277520	.	+	.	ID=gene2122;Name=Y_RS10640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10640;old_locus_tag=y2065
NC_004088.1	Protein Homology	CDS	2276759	2277520	.	+	0	ID=cds2055;Parent=gene2122;Dbxref=Genbank:WP_002210617.1;Name=WP_002210617.1;gbkey=CDS;product=phosphatidylglycerophosphatase B;protein_id=WP_002210617.1;transl_table=11
NC_004088.1	RefSeq	gene	2277689	2278000	.	+	.	ID=gene2123;Name=Y_RS10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10645;old_locus_tag=y2066
NC_004088.1	Protein Homology	CDS	2277689	2278000	.	+	0	ID=cds2056;Parent=gene2123;Dbxref=Genbank:WP_002210616.1;Name=WP_002210616.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210616.1;transl_table=11
NC_004088.1	RefSeq	gene	2278007	2279176	.	+	.	ID=gene2124;Name=Y_RS10650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10650;old_locus_tag=y2067
NC_004088.1	Protein Homology	CDS	2278007	2279176	.	+	0	ID=cds2057;Parent=gene2124;Dbxref=Genbank:WP_002210615.1;Name=WP_002210615.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210615.1;transl_table=11
NC_004088.1	RefSeq	gene	2279298	2279597	.	-	.	ID=gene2125;Name=Y_RS10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10655;old_locus_tag=y2068
NC_004088.1	Protein Homology	CDS	2279298	2279597	.	-	0	ID=cds2058;Parent=gene2125;Dbxref=Genbank:WP_002210614.1;Name=WP_002210614.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210614.1;transl_table=11
NC_004088.1	RefSeq	gene	2280068	2280805	.	+	.	ID=gene2126;Name=Y_RS10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10660;old_locus_tag=y2069
NC_004088.1	Protein Homology	CDS	2280068	2280805	.	+	0	ID=cds2059;Parent=gene2126;Dbxref=Genbank:WP_002210613.1;Name=WP_002210613.1;gbkey=CDS;product=orotidine 5'-phosphate decarboxylase;protein_id=WP_002210613.1;transl_table=11
NC_004088.1	RefSeq	gene	2280805	2281131	.	+	.	ID=gene2127;Name=Y_RS10665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10665;old_locus_tag=y2070
NC_004088.1	Protein Homology	CDS	2280805	2281131	.	+	0	ID=cds2060;Parent=gene2127;Dbxref=Genbank:WP_002210612.1;Name=WP_002210612.1;Note=involved in start site selection during the initiation of translation;gbkey=CDS;product=translation initiation factor Sui1;protein_id=WP_002210612.1;transl_table=11
NC_004088.1	RefSeq	gene	2281369	2281584	.	-	.	ID=gene2128;Name=Y_RS10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10670;old_locus_tag=y2071
NC_004088.1	Protein Homology	CDS	2281369	2281584	.	-	0	ID=cds2061;Parent=gene2128;Dbxref=Genbank:WP_002210611.1;Name=WP_002210611.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002210611.1;transl_table=11
NC_004088.1	RefSeq	gene	2282064	2282759	.	+	.	ID=gene2129;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=Y_RS10675;old_locus_tag=y2072
NC_004088.1	Protein Homology	CDS	2282064	2282759	.	+	0	ID=cds2062;Parent=gene2129;Dbxref=Genbank:WP_002210610.1;Name=WP_002210610.1;Note=catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_002210610.1;transl_table=11
NC_004088.1	RefSeq	gene	2282788	2283036	.	-	.	ID=gene2130;Name=Y_RS10680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10680;old_locus_tag=y2073
NC_004088.1	Protein Homology	CDS	2282788	2283036	.	-	0	ID=cds2063;Parent=gene2130;Dbxref=Genbank:WP_002210609.1;Name=WP_002210609.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210609.1;transl_table=11
NC_004088.1	RefSeq	gene	2283370	2284035	.	+	.	ID=gene2131;Name=Y_RS10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10685;old_locus_tag=y2074
NC_004088.1	Protein Homology	CDS	2283370	2284035	.	+	0	ID=cds2064;Parent=gene2131;Dbxref=Genbank:WP_002215192.1;Name=WP_002215192.1;Note=similar to transaldolase from Escherichia coli%3B many organisms have multiple copies;gbkey=CDS;product=fructose-6-phosphate aldolase;protein_id=WP_002215192.1;transl_table=11
NC_004088.1	RefSeq	gene	2284152	2284457	.	-	.	ID=gene2132;Name=Y_RS10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10690;old_locus_tag=y2075
NC_004088.1	Protein Homology	CDS	2284152	2284457	.	-	0	ID=cds2065;Parent=gene2132;Dbxref=Genbank:WP_002210607.1;Name=WP_002210607.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210607.1;transl_table=11
NC_004088.1	RefSeq	gene	2284450	2286516	.	-	.	ID=gene2133;Name=Y_RS10695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10695;old_locus_tag=y2076
NC_004088.1	Protein Homology	CDS	2284450	2286516	.	-	0	ID=cds2066;Parent=gene2133;Dbxref=Genbank:WP_002220371.1;Name=WP_002220371.1;gbkey=CDS;product=carbon starvation protein A;protein_id=WP_002220371.1;transl_table=11
NC_004088.1	RefSeq	gene	2286866	2288800	.	-	.	ID=gene2134;Name=Y_RS10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10700;old_locus_tag=y2077
NC_004088.1	Protein Homology	CDS	2286866	2288800	.	-	0	ID=cds2067;Parent=gene2134;Dbxref=Genbank:WP_002210605.1;Name=WP_002210605.1;Note=Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction;gbkey=CDS;product=exoribonuclease 2;protein_id=WP_002210605.1;transl_table=11
NC_004088.1	RefSeq	gene	2289459	2290769	.	+	.	ID=gene2135;Name=Y_RS10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10705;old_locus_tag=y2078
NC_004088.1	Protein Homology	CDS	2289459	2290769	.	+	0	ID=cds2068;Parent=gene2135;Dbxref=Genbank:WP_002210604.1;Name=WP_002210604.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002210604.1;transl_table=11
NC_004088.1	RefSeq	gene	2290807	2291805	.	+	.	ID=gene2136;Name=Y_RS10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10710;old_locus_tag=y2079
NC_004088.1	Protein Homology	CDS	2290807	2291805	.	+	0	ID=cds2069;Parent=gene2136;Dbxref=Genbank:WP_002210603.1;Name=WP_002210603.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210603.1;transl_table=11
NC_004088.1	RefSeq	gene	2291988	2292629	.	-	.	ID=gene2137;Name=Y_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10715;old_locus_tag=y2080
NC_004088.1	Protein Homology	CDS	2291988	2292629	.	-	0	ID=cds2070;Parent=gene2137;Dbxref=Genbank:WP_002210602.1;Name=WP_002210602.1;Note=DNA-(apurinic or apyrimidinic site) lyase%3B has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity%3B removed damaged DNA at cytosines%2C thymines and guanines;gbkey=CDS;product=endonuclease III;protein_id=WP_002210602.1;transl_table=11
NC_004088.1	RefSeq	gene	2292626	2293327	.	-	.	ID=gene2138;Name=Y_RS10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10720;old_locus_tag=y2081
NC_004088.1	Protein Homology	CDS	2292626	2293327	.	-	0	ID=cds2071;Parent=gene2138;Dbxref=Genbank:WP_002210601.1;Name=WP_002210601.1;gbkey=CDS;product=electron transport complex subunit E;protein_id=WP_002210601.1;transl_table=11
NC_004088.1	RefSeq	gene	2293324	2293953	.	-	.	ID=gene2139;Name=Y_RS10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10725;old_locus_tag=y2082
NC_004088.1	Protein Homology	CDS	2293324	2293953	.	-	0	ID=cds2072;Parent=gene2139;Dbxref=Genbank:WP_002210600.1;Name=WP_002210600.1;Note=part of membrane-bound complex hought to be involved in electron transport to nitrogen;gbkey=CDS;product=electron transport complex subunit G;protein_id=WP_002210600.1;transl_table=11
NC_004088.1	RefSeq	gene	2293963	2295057	.	-	.	ID=gene2140;Name=Y_RS10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10730;old_locus_tag=y2083
NC_004088.1	Protein Homology	CDS	2293963	2295057	.	-	0	ID=cds2073;Parent=gene2140;Dbxref=Genbank:WP_002210599.1;Name=WP_002210599.1;gbkey=CDS;product=electron transporter RnfG;protein_id=WP_002210599.1;transl_table=11
NC_004088.1	RefSeq	gene	2295546	2296439	.	+	.	ID=gene2141;Name=Y_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10735;old_locus_tag=y2084
NC_004088.1	Protein Homology	CDS	2295546	2296439	.	+	0	ID=cds2074;Parent=gene2141;Dbxref=Genbank:WP_002210598.1;Name=WP_002210598.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002210598.1;transl_table=11
NC_004088.1	RefSeq	gene	2296544	2298523	.	-	.	ID=gene2142;Name=Y_RS10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10740;old_locus_tag=y2085
NC_004088.1	Protein Homology	CDS	2296544	2298523	.	-	0	ID=cds2075;Parent=gene2142;Dbxref=Genbank:WP_002223606.1;Name=WP_002223606.1;gbkey=CDS;product=electron transport complex subunit C;protein_id=WP_002223606.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2296563	2296837	.	+	.	ID=id271;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2298573	2299139	.	-	.	ID=gene2143;Name=Y_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10745;old_locus_tag=y2086
NC_004088.1	Protein Homology	CDS	2298573	2299139	.	-	0	ID=cds2076;Parent=gene2143;Dbxref=Genbank:WP_002210596.1;Name=WP_002210596.1;Note=part of membrane-bound complex thought to be involved in electron transport to nitrogen;gbkey=CDS;product=electron transport complex subunit B;protein_id=WP_002210596.1;transl_table=11
NC_004088.1	RefSeq	gene	2299139	2299720	.	-	.	ID=gene2144;Name=Y_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10750;old_locus_tag=y2087
NC_004088.1	Protein Homology	CDS	2299139	2299720	.	-	0	ID=cds2077;Parent=gene2144;Dbxref=Genbank:WP_002210595.1;Name=WP_002210595.1;gbkey=CDS;product=electron transport complex subunit A;protein_id=WP_002210595.1;transl_table=11
NC_004088.1	RefSeq	gene	2299848	2300291	.	-	.	ID=gene2145;Name=Y_RS10755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10755;old_locus_tag=y2088
NC_004088.1	Protein Homology	CDS	2299848	2300291	.	-	0	ID=cds2078;Parent=gene2145;Dbxref=Genbank:WP_002210594.1;Name=WP_002210594.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210594.1;transl_table=11
NC_004088.1	RefSeq	gene	2300766	2302550	.	+	.	ID=gene2146;Name=Y_RS10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10760;old_locus_tag=y2090
NC_004088.1	Protein Homology	CDS	2300766	2302550	.	+	0	ID=cds2079;Parent=gene2146;Dbxref=Genbank:WP_002215879.1;Name=WP_002215879.1;gbkey=CDS;product=peptidase C39;protein_id=WP_002215879.1;transl_table=11
NC_004088.1	RefSeq	gene	2302603	2302824	.	+	.	ID=gene2147;Name=Y_RS10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10765;old_locus_tag=y2091
NC_004088.1	GeneMarkS+	CDS	2302603	2302824	.	+	0	ID=cds2080;Parent=gene2147;Dbxref=Genbank:WP_002215880.1;Name=WP_002215880.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002215880.1;transl_table=11
NC_004088.1	RefSeq	gene	2302849	2303850	.	+	.	ID=gene2148;Name=Y_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10770
NC_004088.1	Protein Homology	CDS	2302849	2303850	.	+	0	ID=cds2081;Parent=gene2148;Dbxref=Genbank:WP_002215881.1;Name=WP_002215881.1;gbkey=CDS;product=peptide ABC transporter;protein_id=WP_002215881.1;transl_table=11
NC_004088.1	RefSeq	gene	2303850	2304218	.	+	.	ID=gene2149;Name=Y_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10775
NC_004088.1	Protein Homology	CDS	2303850	2304218	.	+	0	ID=cds2082;Parent=gene2149;Dbxref=Genbank:WP_002215882.1;Name=WP_002215882.1;gbkey=CDS;product=hemolysin D;protein_id=WP_002215882.1;transl_table=11
NC_004088.1	RefSeq	gene	2304220	2306358	.	+	.	ID=gene2150;Name=Y_RS10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10780;old_locus_tag=y2093
NC_004088.1	Protein Homology	CDS	2304220	2306358	.	+	0	ID=cds2083;Parent=gene2150;Dbxref=Genbank:WP_002210593.1;Name=WP_002210593.1;gbkey=CDS;product=peptidase C39;protein_id=WP_002210593.1;transl_table=11
NC_004088.1	RefSeq	gene	2306548	2308050	.	-	.	ID=gene2151;Name=Y_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10785;old_locus_tag=y2094
NC_004088.1	Protein Homology	CDS	2306548	2308050	.	-	0	ID=cds2084;Parent=gene2151;Dbxref=Genbank:WP_002210591.1;Name=WP_002210591.1;gbkey=CDS;product=L-arabinose isomerase;protein_id=WP_002210591.1;transl_table=11
NC_004088.1	RefSeq	gene	2308134	2309837	.	-	.	ID=gene2152;Name=Y_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10790;old_locus_tag=y2095
NC_004088.1	Protein Homology	CDS	2308134	2309837	.	-	0	ID=cds2085;Parent=gene2152;Dbxref=Genbank:WP_002210590.1;Name=WP_002210590.1;Note=catalyzes the phosphorylation of ribulose to ribulose 5-phosphate;gbkey=CDS;product=ribulokinase;protein_id=WP_002210590.1;transl_table=11
NC_004088.1	RefSeq	gene	2310245	2311228	.	+	.	ID=gene2153;Name=Y_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10795;old_locus_tag=y2096
NC_004088.1	Protein Homology	CDS	2310245	2311228	.	+	0	ID=cds2086;Parent=gene2153;Dbxref=Genbank:WP_002210589.1;Name=WP_002210589.1;Note=with AraGH is involved in the transport of arabinose into the cell;gbkey=CDS;product=arabinose ABC transporter substrate-binding protein;protein_id=WP_002210589.1;transl_table=11
NC_004088.1	RefSeq	gene	2311326	2312897	.	+	.	ID=gene2154;Name=araG;gbkey=Gene;gene=araG;gene_biotype=protein_coding;locus_tag=Y_RS10800;old_locus_tag=y2097
NC_004088.1	Protein Homology	CDS	2311326	2312897	.	+	0	ID=cds2087;Parent=gene2154;Dbxref=Genbank:WP_002210588.1;Name=WP_002210588.1;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose;gbkey=CDS;gene=araG;product=arabinose import ATP-binding protein AraG;protein_id=WP_002210588.1;transl_table=11
NC_004088.1	RefSeq	gene	2312915	2313964	.	+	.	ID=gene2155;Name=araH;gbkey=Gene;gene=araH;gene_biotype=protein_coding;locus_tag=Y_RS10805;old_locus_tag=y2098
NC_004088.1	Protein Homology	CDS	2312915	2313964	.	+	0	ID=cds2088;Parent=gene2155;Dbxref=Genbank:WP_002210587.1;Name=WP_002210587.1;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose;gbkey=CDS;gene=araH;product=arabinose ABC transporter permease;protein_id=WP_002210587.1;transl_table=11
NC_004088.1	RefSeq	gene	2314185	2315117	.	+	.	ID=gene2156;Name=Y_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10810;old_locus_tag=y2100
NC_004088.1	Protein Homology	CDS	2314185	2315117	.	+	0	ID=cds2089;Parent=gene2156;Dbxref=Genbank:WP_002210586.1;Name=WP_002210586.1;Note=positive and negative regulator%3B regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210586.1;transl_table=11
NC_004088.1	RefSeq	gene	2315245	2316294	.	+	.	ID=gene2157;Name=Y_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10815;old_locus_tag=y2101
NC_004088.1	Protein Homology	CDS	2315245	2316294	.	+	0	ID=cds2090;Parent=gene2157;Dbxref=Genbank:WP_002210585.1;Name=WP_002210585.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002210585.1;transl_table=11
NC_004088.1	RefSeq	gene	2316488	2317516	.	+	.	ID=gene2158;Name=Y_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10820;old_locus_tag=y2102
NC_004088.1	Protein Homology	CDS	2316488	2317516	.	+	0	ID=cds2091;Parent=gene2158;Dbxref=Genbank:WP_002210584.1;Name=WP_002210584.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210584.1;transl_table=11
NC_004088.1	RefSeq	gene	2317722	2318321	.	+	.	ID=gene2159;Name=Y_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10825;old_locus_tag=y2103
NC_004088.1	Protein Homology	CDS	2317722	2318321	.	+	0	ID=cds2092;Parent=gene2159;Dbxref=Genbank:WP_002210583.1;Name=WP_002210583.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210583.1;transl_table=11
NC_004088.1	RefSeq	gene	2318370	2319914	.	-	.	ID=gene2160;Name=Y_RS10830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10830;old_locus_tag=y2104
NC_004088.1	Protein Homology	CDS	2318370	2319914	.	-	0	ID=cds2093;Parent=gene2160;Dbxref=Genbank:WP_002216605.1;Name=WP_002216605.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216605.1;transl_table=11
NC_004088.1	RefSeq	gene	2320154	2321329	.	-	.	ID=gene2161;Name=Y_RS10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10835;old_locus_tag=y2105
NC_004088.1	Protein Homology	CDS	2320154	2321329	.	-	0	ID=cds2094;Parent=gene2161;Dbxref=Genbank:WP_002210579.1;Name=WP_002210579.1;Note=catalyzes the formation of of fructose 6-phosphate from mannose 6-phosphate;gbkey=CDS;product=mannose-6-phosphate isomerase;protein_id=WP_002210579.1;transl_table=11
NC_004088.1	RefSeq	gene	2321613	2323010	.	+	.	ID=gene2162;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=Y_RS10840;old_locus_tag=y2106
NC_004088.1	Protein Homology	CDS	2321613	2323010	.	+	0	ID=cds2095;Parent=gene2162;Dbxref=Genbank:WP_002210578.1;Name=WP_002210578.1;Note=class II family (does not require metal)%3B tetrameric enzyme%3B fumarase C%3B reversibly converts (S)-malate to fumarate and water%3B functions in the TCA cycle;gbkey=CDS;gene=fumC;product=fumarate hydratase class II;protein_id=WP_002210578.1;transl_table=11
NC_004088.1	RefSeq	gene	2323090	2324025	.	-	.	ID=gene2163;Name=Y_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10845;old_locus_tag=y2107
NC_004088.1	Protein Homology	CDS	2323090	2324025	.	-	0	ID=cds2096;Parent=gene2163;Dbxref=Genbank:WP_002227921.1;Name=WP_002227921.1;Note=binds to DNA replication terminator sequences to prevent passage of replication forks;gbkey=CDS;product=DNA replication terminus site-binding protein;protein_id=WP_002227921.1;transl_table=11
NC_004088.1	RefSeq	gene	2324230	2325528	.	-	.	ID=gene2164;Name=Y_RS10850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS10850;old_locus_tag=y2108;pseudo=true
NC_004088.1	Protein Homology	CDS	2324230	2325528	.	-	0	ID=cds2097;Parent=gene2164;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(2324410..2324412)%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	2325741	2326619	.	+	.	ID=gene2165;Name=Y_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10855;old_locus_tag=y2109
NC_004088.1	Protein Homology	CDS	2325741	2326619	.	+	0	ID=cds2098;Parent=gene2165;Dbxref=Genbank:WP_002220360.1;Name=WP_002220360.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002220360.1;transl_table=11
NC_004088.1	RefSeq	gene	2326833	2328050	.	+	.	ID=gene2166;Name=Y_RS10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10860;old_locus_tag=y2110
NC_004088.1	Protein Homology	CDS	2326833	2328050	.	+	0	ID=cds2099;Parent=gene2166;Dbxref=Genbank:WP_002223603.1;Name=WP_002223603.1;Note=mlc%2C controls the expression of genes involved in the phosphotransferase and phosphoenolpyruvate systems%2C regulates genes involved in the uptake of sugars;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002223603.1;transl_table=11
NC_004088.1	RefSeq	gene	2328274	2328942	.	+	.	ID=gene2167;Name=Y_RS10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10865;old_locus_tag=y2111
NC_004088.1	Protein Homology	CDS	2328274	2328942	.	+	0	ID=cds2100;Parent=gene2167;Dbxref=Genbank:WP_002210575.1;Name=WP_002210575.1;Note=DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium;gbkey=CDS;product=dithiobiotin synthetase;protein_id=WP_002210575.1;transl_table=11
NC_004088.1	RefSeq	gene	2329065	2330345	.	-	.	ID=gene2168;Name=Y_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10870;old_locus_tag=y2112
NC_004088.1	Protein Homology	CDS	2329065	2330345	.	-	0	ID=cds2101;Parent=gene2168;Dbxref=Genbank:WP_002210574.1;Name=WP_002210574.1;gbkey=CDS;product=voltage-gated ClC-type chloride channel ClcB;protein_id=WP_002210574.1;transl_table=11
NC_004088.1	RefSeq	gene	2330713	2330823	.	-	.	ID=gene2169;Name=Y_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10875
NC_004088.1	Protein Homology	CDS	2330713	2330823	.	-	0	ID=cds2102;Parent=gene2169;Dbxref=Genbank:WP_002214514.1;Name=WP_002214514.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214514.1;transl_table=11
NC_004088.1	RefSeq	gene	2330945	2331961	.	-	.	ID=gene2170;Name=Y_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10880;old_locus_tag=y2113
NC_004088.1	Protein Homology	CDS	2330945	2331961	.	-	0	ID=cds2103;Parent=gene2170;Dbxref=Genbank:WP_002211038.1;Name=WP_002211038.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002211038.1;transl_table=11
NC_004088.1	RefSeq	gene	2332025	2332495	.	-	.	ID=gene2171;Name=Y_RS10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10885;old_locus_tag=y2114
NC_004088.1	Protein Homology	CDS	2332025	2332495	.	-	0	ID=cds2104;Parent=gene2171;Dbxref=Genbank:WP_002211037.1;Name=WP_002211037.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211037.1;transl_table=11
NC_004088.1	RefSeq	gene	2332639	2332989	.	-	.	ID=gene2172;Name=Y_RS10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10890
NC_004088.1	Protein Homology	CDS	2332639	2332989	.	-	0	ID=cds2105;Parent=gene2172;Dbxref=Genbank:WP_002232804.1;Name=WP_002232804.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002232804.1;transl_table=11
NC_004088.1	RefSeq	gene	2333428	2334459	.	+	.	ID=gene2173;Name=Y_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10895;old_locus_tag=y2116
NC_004088.1	Protein Homology	CDS	2333428	2334459	.	+	0	ID=cds2106;Parent=gene2173;Dbxref=Genbank:WP_002211035.1;Name=WP_002211035.1;gbkey=CDS;product=myristoyl transferase;protein_id=WP_002211035.1;transl_table=11
NC_004088.1	RefSeq	gene	2334463	2335284	.	+	.	ID=gene2174;Name=Y_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10900;old_locus_tag=y2117
NC_004088.1	Protein Homology	CDS	2334463	2335284	.	+	0	ID=cds2107;Parent=gene2174;Dbxref=Genbank:WP_002211034.1;Name=WP_002211034.1;gbkey=CDS;product=sulfonate ABC transporter permease;protein_id=WP_002211034.1;transl_table=11
NC_004088.1	RefSeq	gene	2335294	2336112	.	+	.	ID=gene2175;Name=Y_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10905;old_locus_tag=y2118
NC_004088.1	Protein Homology	CDS	2335294	2336112	.	+	0	ID=cds2108;Parent=gene2175;Dbxref=Genbank:WP_002223602.1;Name=WP_002223602.1;gbkey=CDS;product=sulfonate ABC transporter ATP-binding protein;protein_id=WP_002223602.1;transl_table=11
NC_004088.1	RefSeq	gene	2336537	2338027	.	-	.	ID=gene2176;Name=Y_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10910;old_locus_tag=y2119
NC_004088.1	Protein Homology	CDS	2336537	2338027	.	-	0	ID=cds2109;Parent=gene2176;Dbxref=Genbank:WP_002223601.1;Name=WP_002223601.1;Note=Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile;gbkey=CDS;product=AMP nucleosidase;protein_id=WP_002223601.1;transl_table=11
NC_004088.1	RefSeq	gene	2338233	2339666	.	+	.	ID=gene2177;Name=Y_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10915;old_locus_tag=y2121
NC_004088.1	Protein Homology	CDS	2338233	2339666	.	+	0	ID=cds2110;Parent=gene2177;Dbxref=Genbank:WP_002211031.1;Name=WP_002211031.1;gbkey=CDS;product=virulence factor;protein_id=WP_002211031.1;transl_table=11
NC_004088.1	RefSeq	gene	2339671	2342742	.	+	.	ID=gene2178;Name=Y_RS10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10920;old_locus_tag=y2122
NC_004088.1	Protein Homology	CDS	2339671	2342742	.	+	0	ID=cds2111;Parent=gene2178;Dbxref=Genbank:WP_002211030.1;Name=WP_002211030.1;gbkey=CDS;product=virulence factor;protein_id=WP_002211030.1;transl_table=11
NC_004088.1	RefSeq	gene	2342739	2345279	.	+	.	ID=gene2179;Name=Y_RS10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10925;old_locus_tag=y2123
NC_004088.1	Protein Homology	CDS	2342739	2345279	.	+	0	ID=cds2112;Parent=gene2179;Dbxref=Genbank:WP_002223600.1;Name=WP_002223600.1;gbkey=CDS;product=virulence factor;protein_id=WP_002223600.1;transl_table=11
NC_004088.1	RefSeq	gene	2345448	2346242	.	-	.	ID=gene2180;Name=Y_RS10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10930;old_locus_tag=y2124
NC_004088.1	Protein Homology	CDS	2345448	2346242	.	-	0	ID=cds2113;Parent=gene2180;Dbxref=Genbank:WP_002220345.1;Name=WP_002220345.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002220345.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	2346314	2346332	.	-	.	ID=id272;Dbxref=CollecTF:EXPSITE_00000d00;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y2124;gbkey=protein_bind
NC_004088.1	RefSeq	gene	2346830	2348497	.	+	.	ID=gene2181;Name=Y_RS10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10935;old_locus_tag=y2126
NC_004088.1	Protein Homology	CDS	2346830	2348497	.	+	0	ID=cds2114;Parent=gene2181;Dbxref=Genbank:WP_002211027.1;Name=WP_002211027.1;gbkey=CDS;product=acetolactate synthase;protein_id=WP_002211027.1;transl_table=11
NC_004088.1	RefSeq	gene	2348499	2348801	.	+	.	ID=gene2182;Name=Y_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10940;old_locus_tag=y2127
NC_004088.1	Protein Homology	CDS	2348499	2348801	.	+	0	ID=cds2115;Parent=gene2182;Dbxref=Genbank:WP_002211026.1;Name=WP_002211026.1;gbkey=CDS;product=acetolactate synthase;protein_id=WP_002211026.1;transl_table=11
NC_004088.1	RefSeq	gene	2348868	2349542	.	-	.	ID=gene2183;Name=Y_RS10945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10945;old_locus_tag=y2128
NC_004088.1	Protein Homology	CDS	2348868	2349542	.	-	0	ID=cds2116;Parent=gene2183;Dbxref=Genbank:WP_002211025.1;Name=WP_002211025.1;Note=manganese-dependent 5'-nucleotidase%3B specific for 5'-UMP%2C 5'-dUMP%2C and 5'-dTMP%3B member of haloacid dehalogenase (HAD)-like hydrolase superfamily;gbkey=CDS;product=dUMP phosphatase;protein_id=WP_002211025.1;transl_table=11
NC_004088.1	RefSeq	gene	2349673	2351058	.	-	.	ID=gene2184;Name=Y_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10950
NC_004088.1	Protein Homology	CDS	2349673	2351058	.	-	0	ID=cds2117;Parent=gene2184;Dbxref=Genbank:WP_002227914.1;Name=WP_002227914.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002227914.1;transl_table=11
NC_004088.1	RefSeq	gene	2351058	2352069	.	-	.	ID=gene2185;Name=Y_RS10955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS10955;pseudo=true
NC_004088.1	Protein Homology	CDS	2351058	2352069	.	-	0	ID=cds2118;Parent=gene2185;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2352615	2354060	.	-	.	ID=gene2186;Name=Y_RS10960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10960;old_locus_tag=y2130
NC_004088.1	Protein Homology	CDS	2352615	2354060	.	-	0	ID=cds2119;Parent=gene2186;Dbxref=Genbank:WP_002211024.1;Name=WP_002211024.1;gbkey=CDS;product=alkaline phosphatase;protein_id=WP_002211024.1;transl_table=11
NC_004088.1	RefSeq	gene	2354301	2354819	.	+	.	ID=gene2187;Name=Y_RS10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10965;old_locus_tag=y2131
NC_004088.1	Protein Homology	CDS	2354301	2354819	.	+	0	ID=cds2120;Parent=gene2187;Dbxref=Genbank:WP_002211023.1;Name=WP_002211023.1;gbkey=CDS;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=WP_002211023.1;transl_table=11
NC_004088.1	RefSeq	gene	2354892	2355644	.	+	.	ID=gene2188;Name=Y_RS10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10970;old_locus_tag=y2132
NC_004088.1	Protein Homology	CDS	2354892	2355644	.	+	0	ID=cds2121;Parent=gene2188;Dbxref=Genbank:WP_002211022.1;Name=WP_002211022.1;Note=Global transcription factor that controls the expression of over 100 target genes in response to anoxia;gbkey=CDS;product=fumarate and nitrate reduction regulatory protein;protein_id=WP_002211022.1;transl_table=11
NC_004088.1	RefSeq	gene	2355779	2356735	.	+	.	ID=gene2189;Name=Y_RS10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10975;old_locus_tag=y2133
NC_004088.1	Protein Homology	CDS	2355779	2356735	.	+	0	ID=cds2122;Parent=gene2189;Dbxref=Genbank:WP_002211021.1;Name=WP_002211021.1;Note=with UspC and UspD is involved in resistance to UV irradiation;gbkey=CDS;product=universal stress protein E;protein_id=WP_002211021.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2356790	2356964	.	+	.	ID=id273;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2357010	2358404	.	-	.	ID=gene2190;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=Y_RS10980;old_locus_tag=y2134
NC_004088.1	Protein Homology	CDS	2357010	2358404	.	-	0	ID=cds2123;Parent=gene2190;Dbxref=Genbank:WP_002211020.1;Name=WP_002211020.1;Note=catalyzes reversible transfer of hydride ion equivalent between NAD and NADP%3B membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane%3B forms a tetramer composed of two alpha and 2 beta subunits%3B AB-stereospecific enzyme;gbkey=CDS;gene=pntB;product=pyridine nucleotide transhydrogenase;protein_id=WP_002211020.1;transl_table=11
NC_004088.1	RefSeq	gene	2358477	2360003	.	-	.	ID=gene2191;Name=pntA;gbkey=Gene;gene=pntA;gene_biotype=protein_coding;locus_tag=Y_RS10985;old_locus_tag=y2135
NC_004088.1	Protein Homology	CDS	2358477	2360003	.	-	0	ID=cds2124;Parent=gene2191;Dbxref=Genbank:WP_002211019.1;Name=WP_002211019.1;Note=forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane%3B involved in catalyzing transfer of hydride ion equivalents between NAD and NADP%3B stereospecific (AB-specific)%3B functions as a proton pump by translocating protons from cytoplasm to periplasm;gbkey=CDS;gene=pntA;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_002211019.1;transl_table=11
NC_004088.1	RefSeq	gene	2360124	2360327	.	-	.	ID=gene2192;Name=Y_RS10990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10990
NC_004088.1	Protein Homology	CDS	2360124	2360327	.	-	0	ID=cds2125;Parent=gene2192;Dbxref=Genbank:WP_002227912.1;Name=WP_002227912.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002227912.1;transl_table=11
NC_004088.1	RefSeq	gene	2360533	2361486	.	+	.	ID=gene2193;Name=Y_RS10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS10995;old_locus_tag=y2136
NC_004088.1	Protein Homology	CDS	2360533	2361486	.	+	0	ID=cds2126;Parent=gene2193;Dbxref=Genbank:WP_002211018.1;Name=WP_002211018.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211018.1;transl_table=11
NC_004088.1	RefSeq	gene	2361756	2363147	.	+	.	ID=gene2194;Name=Y_RS11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11000;old_locus_tag=y2137
NC_004088.1	Protein Homology	CDS	2361756	2363147	.	+	0	ID=cds2127;Parent=gene2194;Dbxref=Genbank:WP_002211017.1;Name=WP_002211017.1;gbkey=CDS;product=arginine:ornithine antiporter;protein_id=WP_002211017.1;transl_table=11
NC_004088.1	RefSeq	gene	2363171	2363587	.	-	.	ID=gene2195;Name=Y_RS11005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11005;old_locus_tag=y2138
NC_004088.1	Protein Homology	CDS	2363171	2363587	.	-	0	ID=cds2128;Parent=gene2195;Dbxref=Genbank:WP_002211016.1;Name=WP_002211016.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211016.1;transl_table=11
NC_004088.1	RefSeq	gene	2363884	2364630	.	+	.	ID=gene2196;Name=Y_RS11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11010;old_locus_tag=y2139
NC_004088.1	Protein Homology	CDS	2363884	2364630	.	+	0	ID=cds2129;Parent=gene2196;Dbxref=Genbank:WP_002211015.1;Name=WP_002211015.1;Note=response regulator in two-component regulatory system with RstB;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002211015.1;transl_table=11
NC_004088.1	RefSeq	gene	2364630	2365934	.	+	.	ID=gene2197;Name=Y_RS11015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11015;old_locus_tag=y2140
NC_004088.1	Protein Homology	CDS	2364630	2365934	.	+	0	ID=cds2130;Parent=gene2197;Dbxref=Genbank:WP_002232819.1;Name=WP_002232819.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_002232819.1;transl_table=11
NC_004088.1	RefSeq	gene	2366029	2367528	.	+	.	ID=gene2198;Name=Y_RS11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11020;old_locus_tag=y2141
NC_004088.1	Protein Homology	CDS	2366029	2367528	.	+	0	ID=cds2131;Parent=gene2198;Dbxref=Genbank:WP_002211014.1;Name=WP_002211014.1;gbkey=CDS;product=peptidase M32;protein_id=WP_002211014.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2367540	2370000	.	+	.	ID=id274;gbkey=repeat_region
NC_004088.1	RefSeq	region	2367544	2368044	.	-	.	ID=id275;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2367650	2368072	.	-	.	ID=gene2199;Name=Y_RS11025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11025;old_locus_tag=y2142
NC_004088.1	Protein Homology	CDS	2367650	2368072	.	-	0	ID=cds2132;Parent=gene2199;Dbxref=Genbank:WP_002223594.1;Name=WP_002223594.1;gbkey=CDS;product=transposase;protein_id=WP_002223594.1;transl_table=11
NC_004088.1	RefSeq	region	2368045	2369998	.	+	.	ID=id276;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2368131	2369153	.	+	.	ID=gene2200;Name=Y_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11030;old_locus_tag=y2143
NC_004088.1	Protein Homology	CDS	2368131	2369153	.	+	0	ID=cds2133;Parent=gene2200;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	2369153	2369932	.	+	.	ID=gene2201;Name=Y_RS11035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11035;old_locus_tag=y2144
NC_004088.1	Protein Homology	CDS	2369153	2369932	.	+	0	ID=cds2134;Parent=gene2201;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	2370301	2370891	.	-	.	ID=gene2202;Name=Y_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11040;old_locus_tag=y2145
NC_004088.1	Protein Homology	CDS	2370301	2370891	.	-	0	ID=cds2135;Parent=gene2202;Dbxref=Genbank:WP_002210659.1;Name=WP_002210659.1;Note=catalyzes the formation of thymidine 5'-phosphate from thymidine;gbkey=CDS;product=thymidine kinase;protein_id=WP_002210659.1;transl_table=11
NC_004088.1	RefSeq	gene	2371641	2372048	.	+	.	ID=gene2203;Name=Y_RS11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11045;old_locus_tag=y2146
NC_004088.1	Protein Homology	CDS	2371641	2372048	.	+	0	ID=cds2136;Parent=gene2203;Dbxref=Genbank:WP_002223593.1;Name=WP_002223593.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002223593.1;transl_table=11
NC_004088.1	RefSeq	gene	2372483	2373829	.	-	.	ID=gene2204;Name=Y_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11050;old_locus_tag=y2147
NC_004088.1	Protein Homology	CDS	2372483	2373829	.	-	0	ID=cds2137;Parent=gene2204;Dbxref=Genbank:WP_002210664.1;Name=WP_002210664.1;gbkey=CDS;product=UDP-glucose 6-dehydrogenase;protein_id=WP_002210664.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	2374056	2374074	.	-	.	ID=id277;Dbxref=CollecTF:EXPSITE_00000d10;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y2147;gbkey=protein_bind
NC_004088.1	RefSeq	gene	2374136	2375152	.	-	.	ID=gene2205;Name=Y_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11055;old_locus_tag=y2148
NC_004088.1	Protein Homology	CDS	2374136	2375152	.	-	0	ID=cds2138;Parent=gene2205;Dbxref=Genbank:WP_002210665.1;Name=WP_002210665.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210665.1;transl_table=11
NC_004088.1	RefSeq	gene	2376486	2376950	.	+	.	ID=gene2206;Name=Y_RS11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11060;old_locus_tag=y2149
NC_004088.1	Protein Homology	CDS	2376486	2376950	.	+	0	ID=cds2139;Parent=gene2206;Dbxref=Genbank:WP_002210666.1;Name=WP_002210666.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210666.1;transl_table=11
NC_004088.1	RefSeq	gene	2377034	2377905	.	+	.	ID=gene2207;Name=Y_RS11065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS11065;old_locus_tag=y2150;pseudo=true
NC_004088.1	Protein Homology	CDS	2377034	2377905	.	+	0	ID=cds2140;Parent=gene2207;exception=annotated by transcript or proteomic data;gbkey=CDS;product=formyltetrahydrofolate deformylase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	2377830	2379149	.	+	.	ID=id278;gbkey=repeat_region
NC_004088.1	RefSeq	region	2377833	2379147	.	-	.	ID=id279;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2377868	2379076	.	-	.	ID=gene2208;Name=Y_RS11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11070;old_locus_tag=y2151
NC_004088.1	Protein Homology	CDS	2377868	2379076	.	-	0	ID=cds2141;Parent=gene2208;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2379356	2379440	.	+	.	ID=gene2209;Name=Y_RS11075;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS11075;old_locus_tag=yt045
NC_004088.1	tRNAscan-SE	tRNA	2379356	2379440	.	+	.	ID=rna62;Parent=gene2209;anticodon=(pos:2379390..2379392);gbkey=tRNA;product=tRNA-Tyr
NC_004088.1	tRNAscan-SE	exon	2379356	2379440	.	+	.	ID=id280;Parent=rna62;anticodon=(pos:2379390..2379392);gbkey=tRNA;product=tRNA-Tyr
NC_004088.1	RefSeq	repeat_region	2379422	2379886	.	+	.	ID=id281;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2379948	2380808	.	-	.	ID=gene2210;Name=Y_RS11080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11080;old_locus_tag=y2152
NC_004088.1	Protein Homology	CDS	2379948	2380808	.	-	0	ID=cds2142;Parent=gene2210;Dbxref=Genbank:WP_002211665.1;Name=WP_002211665.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002211665.1;transl_table=11
NC_004088.1	RefSeq	gene	2381618	2382424	.	+	.	ID=gene2211;Name=Y_RS11085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11085;old_locus_tag=y2153
NC_004088.1	Protein Homology	CDS	2381618	2382424	.	+	0	ID=cds2143;Parent=gene2211;Dbxref=Genbank:WP_002211667.1;Name=WP_002211667.1;gbkey=CDS;product=exonuclease III;protein_id=WP_002211667.1;transl_table=11
NC_004088.1	RefSeq	gene	2382522	2382908	.	+	.	ID=gene2212;Name=Y_RS11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11090;old_locus_tag=y2154
NC_004088.1	Protein Homology	CDS	2382522	2382908	.	+	0	ID=cds2144;Parent=gene2212;Dbxref=Genbank:WP_002211668.1;Name=WP_002211668.1;gbkey=CDS;product=pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_002211668.1;transl_table=11
NC_004088.1	RefSeq	gene	2382921	2383211	.	-	.	ID=gene2213;Name=Y_RS11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11095;old_locus_tag=y2155
NC_004088.1	Protein Homology	CDS	2382921	2383211	.	-	0	ID=cds2145;Parent=gene2213;Dbxref=Genbank:WP_002211669.1;Name=WP_002211669.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211669.1;transl_table=11
NC_004088.1	RefSeq	gene	2383208	2385133	.	-	.	ID=gene2214;Name=Y_RS11100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11100;old_locus_tag=y2156
NC_004088.1	Protein Homology	CDS	2383208	2385133	.	-	0	ID=cds2146;Parent=gene2214;Dbxref=Genbank:WP_002211670.1;Name=WP_002211670.1;Note=decatenates replicating daughter chromosomes;gbkey=CDS;product=DNA topoisomerase III;protein_id=WP_002211670.1;transl_table=11
NC_004088.1	RefSeq	gene	2385180	2386226	.	-	.	ID=gene2215;Name=Y_RS11105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11105;old_locus_tag=y2157
NC_004088.1	Protein Homology	CDS	2385180	2386226	.	-	0	ID=cds2147;Parent=gene2215;Dbxref=Genbank:WP_002211671.1;Name=WP_002211671.1;Note=catalyzes the formation of selenophosphate from selenide and ATP;gbkey=CDS;product=selenophosphate synthase;protein_id=WP_002211671.1;transl_table=11
NC_004088.1	RefSeq	gene	2386451	2387002	.	-	.	ID=gene2216;Name=Y_RS11110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11110;old_locus_tag=y2159
NC_004088.1	Protein Homology	CDS	2386451	2387002	.	-	0	ID=cds2148;Parent=gene2216;Dbxref=Genbank:WP_002211673.1;Name=WP_002211673.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002211673.1;transl_table=11
NC_004088.1	RefSeq	gene	2387165	2389015	.	+	.	ID=gene2217;Name=Y_RS11115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11115;old_locus_tag=y2160
NC_004088.1	Protein Homology	CDS	2387165	2389015	.	+	0	ID=cds2149;Parent=gene2217;Dbxref=Genbank:WP_002211674.1;Name=WP_002211674.1;Note=SppA%3B catalyzes the degradation of cleaved signal peptides%3B essential to maintain secretion of mature proteins across the membrane;gbkey=CDS;product=signal peptide peptidase SppA;protein_id=WP_002211674.1;transl_table=11
NC_004088.1	RefSeq	gene	2389132	2390148	.	+	.	ID=gene2218;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=Y_RS11120;old_locus_tag=y2161
NC_004088.1	Protein Homology	CDS	2389132	2390148	.	+	0	ID=cds2150;Parent=gene2218;Dbxref=Genbank:WP_002211675.1;Name=WP_002211675.1;Note=converts asparagine to aspartate and ammonia;gbkey=CDS;gene=ansA;product=asparaginase;protein_id=WP_002211675.1;transl_table=11
NC_004088.1	RefSeq	gene	2390163	2390810	.	+	.	ID=gene2219;Name=Y_RS11125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11125;old_locus_tag=y2162
NC_004088.1	Protein Homology	CDS	2390163	2390810	.	+	0	ID=cds2151;Parent=gene2219;Dbxref=Genbank:WP_002211676.1;Name=WP_002211676.1;gbkey=CDS;product=nicotinamidase/pyrazinamidase;protein_id=WP_002211676.1;transl_table=11
NC_004088.1	RefSeq	gene	2390944	2391216	.	-	.	ID=gene2220;Name=Y_RS11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11130
NC_004088.1	Protein Homology	CDS	2390944	2391216	.	-	0	ID=cds2152;Parent=gene2220;Dbxref=Genbank:WP_002217933.1;Name=WP_002217933.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217933.1;transl_table=11
NC_004088.1	RefSeq	gene	2391287	2391700	.	-	.	ID=gene2221;Name=Y_RS11135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11135;old_locus_tag=y2164
NC_004088.1	Protein Homology	CDS	2391287	2391700	.	-	0	ID=cds2153;Parent=gene2221;Dbxref=Genbank:WP_002211677.1;Name=WP_002211677.1;gbkey=CDS;product=peptide methionine sulfoxide reductase MsrB;protein_id=WP_002211677.1;transl_table=11
NC_004088.1	RefSeq	gene	2392048	2393043	.	+	.	ID=gene2222;Name=Y_RS11140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11140;old_locus_tag=y2165
NC_004088.1	Protein Homology	CDS	2392048	2393043	.	+	0	ID=cds2154;Parent=gene2222;Dbxref=Genbank:WP_002224141.1;Name=WP_002224141.1;gbkey=CDS;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_002224141.1;transl_table=11
NC_004088.1	RefSeq	gene	2393357	2394232	.	+	.	ID=gene2223;Name=Y_RS11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11145;old_locus_tag=y2166
NC_004088.1	Protein Homology	CDS	2393357	2394232	.	+	0	ID=cds2155;Parent=gene2223;Dbxref=Genbank:WP_002211679.1;Name=WP_002211679.1;gbkey=CDS;product=glucose-6-phosphate 1-epimerase;protein_id=WP_002211679.1;transl_table=11
NC_004088.1	RefSeq	gene	2394305	2395075	.	-	.	ID=gene2224;Name=Y_RS11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11150;old_locus_tag=y2167
NC_004088.1	Protein Homology	CDS	2394305	2395075	.	-	0	ID=cds2156;Parent=gene2224;Dbxref=Genbank:WP_002211680.1;Name=WP_002211680.1;Note=scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA;gbkey=CDS;product=MltA-interacting protein MipA;protein_id=WP_002211680.1;transl_table=11
NC_004088.1	RefSeq	gene	2395498	2397432	.	+	.	ID=gene2225;Name=Y_RS11155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11155;old_locus_tag=y2168
NC_004088.1	Protein Homology	CDS	2395498	2397432	.	+	0	ID=cds2157;Parent=gene2225;Dbxref=Genbank:WP_002211681.1;Name=WP_002211681.1;gbkey=CDS;product=PrkA family serine protein kinase;protein_id=WP_002211681.1;transl_table=11
NC_004088.1	RefSeq	gene	2397582	2398856	.	+	.	ID=gene2226;Name=Y_RS11160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11160;old_locus_tag=y2169
NC_004088.1	Protein Homology	CDS	2397582	2398856	.	+	0	ID=cds2158;Parent=gene2226;Dbxref=Genbank:WP_002216501.1;Name=WP_002216501.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216501.1;transl_table=11
NC_004088.1	RefSeq	gene	2398964	2400082	.	+	.	ID=gene2227;Name=Y_RS11165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11165;old_locus_tag=y2170
NC_004088.1	Protein Homology	CDS	2398964	2400082	.	+	0	ID=cds2159;Parent=gene2227;Dbxref=Genbank:WP_002211683.1;Name=WP_002211683.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211683.1;transl_table=11
NC_004088.1	RefSeq	gene	2400117	2401022	.	-	.	ID=gene2228;Name=Y_RS11170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11170;old_locus_tag=y2171
NC_004088.1	Protein Homology	CDS	2400117	2401022	.	-	0	ID=cds2160;Parent=gene2228;Dbxref=Genbank:WP_002211684.1;Name=WP_002211684.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002211684.1;transl_table=11
NC_004088.1	RefSeq	gene	2401220	2402089	.	+	.	ID=gene2229;Name=Y_RS11175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11175;old_locus_tag=y2172
NC_004088.1	Protein Homology	CDS	2401220	2402089	.	+	0	ID=cds2161;Parent=gene2229;Dbxref=Genbank:WP_002211685.1;Name=WP_002211685.1;gbkey=CDS;product=quercetin 2%2C3-dioxygenase;protein_id=WP_002211685.1;transl_table=11
NC_004088.1	RefSeq	gene	2402354	2403556	.	+	.	ID=gene2230;Name=Y_RS11180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11180;old_locus_tag=y2173
NC_004088.1	Protein Homology	CDS	2402354	2403556	.	+	0	ID=cds2162;Parent=gene2230;Dbxref=Genbank:WP_002216508.1;Name=WP_002216508.1;gbkey=CDS;product=Bcr/CflA family drug resistance efflux transporter;protein_id=WP_002216508.1;transl_table=11
NC_004088.1	RefSeq	gene	2403572	2404876	.	-	.	ID=gene2231;Name=Y_RS11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11185;old_locus_tag=y2174
NC_004088.1	Protein Homology	CDS	2403572	2404876	.	-	0	ID=cds2163;Parent=gene2231;Dbxref=Genbank:WP_002211686.1;Name=WP_002211686.1;Note=catalyzes the oxidative deamination of D-amino acids;gbkey=CDS;product=D-amino acid dehydrogenase;protein_id=WP_002211686.1;transl_table=11
NC_004088.1	RefSeq	gene	2405342	2406877	.	+	.	ID=gene2232;Name=Y_RS11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11190;old_locus_tag=y2175
NC_004088.1	Protein Homology	CDS	2405342	2406877	.	+	0	ID=cds2164;Parent=gene2232;Dbxref=Genbank:WP_002211687.1;Name=WP_002211687.1;gbkey=CDS;product=SpoVR family protein;protein_id=WP_002211687.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2406924	2407056	.	+	.	ID=id282;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2407095	2407814	.	-	.	ID=gene2233;Name=Y_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11195;old_locus_tag=y2177
NC_004088.1	Protein Homology	CDS	2407095	2407814	.	-	0	ID=cds2165;Parent=gene2233;Dbxref=Genbank:WP_002211688.1;Name=WP_002211688.1;Note=Multifunctional regulator of fatty acid metabolism;gbkey=CDS;product=fatty acid metabolism regulator protein;protein_id=WP_002211688.1;transl_table=11
NC_004088.1	RefSeq	gene	2408058	2409632	.	+	.	ID=gene2234;Name=Y_RS11200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS11200;pseudo=true
NC_004088.1	Protein Homology	CDS	2408058	2409632	.	+	0	ID=cds2166;Parent=gene2234;gbkey=CDS;product=sodium:proton antiporter;pseudo=true;transl_except=(pos:2409351..2409353%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	2409868	2410398	.	+	.	ID=gene2235;Name=Y_RS11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11205;old_locus_tag=y2179
NC_004088.1	Protein Homology	CDS	2409868	2410398	.	+	0	ID=cds2167;Parent=gene2235;Dbxref=Genbank:WP_002227934.1;Name=WP_002227934.1;gbkey=CDS;product=disulfide bond formation protein B;protein_id=WP_002227934.1;transl_table=11
NC_004088.1	RefSeq	gene	2410815	2411171	.	-	.	ID=gene2236;Name=Y_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11210;old_locus_tag=y2180
NC_004088.1	Protein Homology	CDS	2410815	2411171	.	-	0	ID=cds2168;Parent=gene2236;Dbxref=Genbank:WP_002214494.1;Name=WP_002214494.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214494.1;transl_table=11
NC_004088.1	RefSeq	gene	2412263	2413003	.	+	.	ID=gene2237;Name=Y_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11215;old_locus_tag=y2181
NC_004088.1	Protein Homology	CDS	2412263	2413003	.	+	0	ID=cds2169;Parent=gene2237;Dbxref=Genbank:WP_002211692.1;Name=WP_002211692.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211692.1;transl_table=11
NC_004088.1	RefSeq	gene	2413020	2414219	.	+	.	ID=gene2238;Name=Y_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11220;old_locus_tag=y2182
NC_004088.1	Protein Homology	CDS	2413020	2414219	.	+	0	ID=cds2170;Parent=gene2238;Dbxref=Genbank:WP_002211693.1;Name=WP_002211693.1;Note=catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis;gbkey=CDS;product=aminotransferase;protein_id=WP_002211693.1;transl_table=11
NC_004088.1	RefSeq	gene	2414223	2415395	.	+	.	ID=gene2239;Name=Y_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11225;old_locus_tag=y2183
NC_004088.1	Protein Homology	CDS	2414223	2415395	.	+	0	ID=cds2171;Parent=gene2239;Dbxref=Genbank:WP_002214492.1;Name=WP_002214492.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002214492.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2415625	2416946	.	+	.	ID=id283;gbkey=repeat_region
NC_004088.1	RefSeq	region	2415629	2416943	.	+	.	ID=id284;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2415700	2416908	.	+	.	ID=gene2240;Name=Y_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11230;old_locus_tag=y2184
NC_004088.1	Protein Homology	CDS	2415700	2416908	.	+	0	ID=cds2172;Parent=gene2240;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2416977	2417132	.	-	.	ID=gene2241;Name=Y_RS11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11235
NC_004088.1	Protein Homology	CDS	2416977	2417132	.	-	0	ID=cds2173;Parent=gene2241;Dbxref=Genbank:WP_002211694.1;Name=WP_002211694.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211694.1;transl_table=11
NC_004088.1	RefSeq	gene	2417129	2417548	.	-	.	ID=gene2242;Name=Y_RS11240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11240;old_locus_tag=y2185
NC_004088.1	Protein Homology	CDS	2417129	2417548	.	-	0	ID=cds2174;Parent=gene2242;Dbxref=Genbank:WP_002211695.1;Name=WP_002211695.1;gbkey=CDS;product=tail assembly protein;protein_id=WP_002211695.1;transl_table=11
NC_004088.1	RefSeq	gene	2417559	2418476	.	-	.	ID=gene2243;Name=Y_RS11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11245;old_locus_tag=y2186
NC_004088.1	Protein Homology	CDS	2417559	2418476	.	-	0	ID=cds2175;Parent=gene2243;Dbxref=Genbank:WP_002211696.1;Name=WP_002211696.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211696.1;transl_table=11
NC_004088.1	RefSeq	gene	2418493	2419491	.	-	.	ID=gene2244;Name=Y_RS11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11250;old_locus_tag=y2187
NC_004088.1	Protein Homology	CDS	2418493	2419491	.	-	0	ID=cds2176;Parent=gene2244;Dbxref=Genbank:WP_002211697.1;Name=WP_002211697.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211697.1;transl_table=11
NC_004088.1	RefSeq	gene	2419491	2422694	.	-	.	ID=gene2245;Name=Y_RS11255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11255;old_locus_tag=y2188
NC_004088.1	Protein Homology	CDS	2419491	2422694	.	-	0	ID=cds2177;Parent=gene2245;Dbxref=Genbank:WP_002211698.1;Name=WP_002211698.1;gbkey=CDS;product=host specificity protein;protein_id=WP_002211698.1;transl_table=11
NC_004088.1	RefSeq	gene	2422870	2423091	.	+	.	ID=gene2246;Name=Y_RS11260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11260
NC_004088.1	Protein Homology	CDS	2422870	2423091	.	+	0	ID=cds2178;Parent=gene2246;Dbxref=Genbank:WP_002359202.1;Name=WP_002359202.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002359202.1;transl_table=11
NC_004088.1	RefSeq	gene	2423060	2423224	.	-	.	ID=gene2247;Name=Y_RS11265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11265
NC_004088.1	Protein Homology	CDS	2423060	2423224	.	-	0	ID=cds2179;Parent=gene2247;Dbxref=Genbank:WP_002211699.1;Name=WP_002211699.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211699.1;transl_table=11
NC_004088.1	RefSeq	gene	2423266	2423886	.	-	.	ID=gene2248;Name=Y_RS11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11270;old_locus_tag=y2189
NC_004088.1	Protein Homology	CDS	2423266	2423886	.	-	0	ID=cds2180;Parent=gene2248;Dbxref=Genbank:WP_002211700.1;Name=WP_002211700.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211700.1;transl_table=11
NC_004088.1	RefSeq	gene	2423942	2424157	.	-	.	ID=gene2249;Name=Y_RS11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11275
NC_004088.1	Protein Homology	CDS	2423942	2424157	.	-	0	ID=cds2181;Parent=gene2249;Dbxref=Genbank:WP_002211701.1;Name=WP_002211701.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211701.1;transl_table=11
NC_004088.1	RefSeq	gene	2424300	2424851	.	-	.	ID=gene2250;Name=Y_RS11280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11280;old_locus_tag=y2190
NC_004088.1	Protein Homology	CDS	2424300	2424851	.	-	0	ID=cds2182;Parent=gene2250;Dbxref=Genbank:WP_002214482.1;Name=WP_002214482.1;gbkey=CDS;product=membrane protein;protein_id=WP_002214482.1;transl_table=11
NC_004088.1	RefSeq	gene	2424950	2425957	.	-	.	ID=gene2251;Name=Y_RS11285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11285;old_locus_tag=y2191
NC_004088.1	Protein Homology	CDS	2424950	2425957	.	-	0	ID=cds2183;Parent=gene2251;Dbxref=Genbank:WP_002211704.1;Name=WP_002211704.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211704.1;transl_table=11
NC_004088.1	RefSeq	gene	2426031	2426198	.	-	.	ID=gene2252;Name=Y_RS11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11290
NC_004088.1	Protein Homology	CDS	2426031	2426198	.	-	0	ID=cds2184;Parent=gene2252;Dbxref=Genbank:WP_002211705.1;Name=WP_002211705.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211705.1;transl_table=11
NC_004088.1	RefSeq	gene	2426322	2426753	.	+	.	ID=gene2253;Name=Y_RS11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11295;old_locus_tag=y2192
NC_004088.1	Protein Homology	CDS	2426322	2426753	.	+	0	ID=cds2185;Parent=gene2253;Dbxref=Genbank:WP_002211706.1;Name=WP_002211706.1;gbkey=CDS;product=Rha family transcriptional regulator;protein_id=WP_002211706.1;transl_table=11
NC_004088.1	RefSeq	gene	2426832	2427464	.	-	.	ID=gene2254;Name=Y_RS11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11300;old_locus_tag=y2193
NC_004088.1	Protein Homology	CDS	2426832	2427464	.	-	0	ID=cds2186;Parent=gene2254;Dbxref=Genbank:WP_002211707.1;Name=WP_002211707.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211707.1;transl_table=11
NC_004088.1	RefSeq	gene	2427725	2428435	.	-	.	ID=gene2255;Name=Y_RS11305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11305;old_locus_tag=y2194
NC_004088.1	Protein Homology	CDS	2427725	2428435	.	-	0	ID=cds2187;Parent=gene2255;Dbxref=Genbank:WP_002211708.1;Name=WP_002211708.1;gbkey=CDS;product=peptidase P60;protein_id=WP_002211708.1;transl_table=11
NC_004088.1	RefSeq	gene	2428438	2429190	.	-	.	ID=gene2256;Name=Y_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11310;old_locus_tag=y2195
NC_004088.1	Protein Homology	CDS	2428438	2429190	.	-	0	ID=cds2188;Parent=gene2256;Dbxref=Genbank:WP_002211709.1;Name=WP_002211709.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211709.1;transl_table=11
NC_004088.1	RefSeq	gene	2429364	2429705	.	-	.	ID=gene2257;Name=Y_RS11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11315;old_locus_tag=y2196
NC_004088.1	Protein Homology	CDS	2429364	2429705	.	-	0	ID=cds2189;Parent=gene2257;Dbxref=Genbank:WP_002211710.1;Name=WP_002211710.1;gbkey=CDS;product=phage tail protein;protein_id=WP_002211710.1;transl_table=11
NC_004088.1	RefSeq	gene	2429708	2433211	.	-	.	ID=gene2258;Name=Y_RS11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11320;old_locus_tag=y2197
NC_004088.1	Protein Homology	CDS	2429708	2433211	.	-	0	ID=cds2190;Parent=gene2258;Dbxref=Genbank:WP_002211711.1;Name=WP_002211711.1;gbkey=CDS;product=tail protein;protein_id=WP_002211711.1;transl_table=11
NC_004088.1	RefSeq	gene	2433212	2433433	.	-	.	ID=gene2259;Name=Y_RS11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11325
NC_004088.1	Protein Homology	CDS	2433212	2433433	.	-	0	ID=cds2191;Parent=gene2259;Dbxref=Genbank:WP_016257894.1;Name=WP_016257894.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016257894.1;transl_table=11
NC_004088.1	RefSeq	gene	2433520	2433831	.	-	.	ID=gene2260;Name=Y_RS11330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11330;old_locus_tag=y2198
NC_004088.1	Protein Homology	CDS	2433520	2433831	.	-	0	ID=cds2192;Parent=gene2260;Dbxref=Genbank:WP_002211712.1;Name=WP_002211712.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211712.1;transl_table=11
NC_004088.1	RefSeq	gene	2433844	2434764	.	-	.	ID=gene2261;Name=Y_RS11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11335;old_locus_tag=y2199
NC_004088.1	Protein Homology	CDS	2433844	2434764	.	-	0	ID=cds2193;Parent=gene2261;Dbxref=Genbank:WP_002211713.1;Name=WP_002211713.1;gbkey=CDS;product=phage tail protein;protein_id=WP_002211713.1;transl_table=11
NC_004088.1	RefSeq	gene	2434830	2435237	.	-	.	ID=gene2262;Name=Y_RS11340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11340;old_locus_tag=y2200
NC_004088.1	Protein Homology	CDS	2434830	2435237	.	-	0	ID=cds2194;Parent=gene2262;Dbxref=Genbank:WP_002211714.1;Name=WP_002211714.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211714.1;transl_table=11
NC_004088.1	RefSeq	gene	2435234	2435818	.	-	.	ID=gene2263;Name=Y_RS11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11345;old_locus_tag=y2201
NC_004088.1	Protein Homology	CDS	2435234	2435818	.	-	0	ID=cds2195;Parent=gene2263;Dbxref=Genbank:WP_002211715.1;Name=WP_002211715.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211715.1;transl_table=11
NC_004088.1	RefSeq	gene	2435820	2436170	.	-	.	ID=gene2264;Name=Y_RS11350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11350;old_locus_tag=y2202
NC_004088.1	Protein Homology	CDS	2435820	2436170	.	-	0	ID=cds2196;Parent=gene2264;Dbxref=Genbank:WP_002211716.1;Name=WP_002211716.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211716.1;transl_table=11
NC_004088.1	RefSeq	gene	2436172	2436426	.	-	.	ID=gene2265;Name=Y_RS11355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11355;old_locus_tag=y2203
NC_004088.1	Protein Homology	CDS	2436172	2436426	.	-	0	ID=cds2197;Parent=gene2265;Dbxref=Genbank:WP_002211717.1;Name=WP_002211717.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211717.1;transl_table=11
NC_004088.1	RefSeq	gene	2436423	2436905	.	-	.	ID=gene2266;Name=Y_RS11360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11360;old_locus_tag=y2204
NC_004088.1	Protein Homology	CDS	2436423	2436905	.	-	0	ID=cds2198;Parent=gene2266;Dbxref=Genbank:WP_002211718.1;Name=WP_002211718.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211718.1;transl_table=11
NC_004088.1	RefSeq	gene	2436953	2438158	.	-	.	ID=gene2267;Name=Y_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11365;old_locus_tag=y2205
NC_004088.1	Protein Homology	CDS	2436953	2438158	.	-	0	ID=cds2199;Parent=gene2267;Dbxref=Genbank:WP_002211719.1;Name=WP_002211719.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211719.1;transl_table=11
NC_004088.1	RefSeq	gene	2438172	2438945	.	-	.	ID=gene2268;Name=Y_RS11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11370;old_locus_tag=y2206
NC_004088.1	Protein Homology	CDS	2438172	2438945	.	-	0	ID=cds2200;Parent=gene2268;Dbxref=Genbank:WP_002211720.1;Name=WP_002211720.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211720.1;transl_table=11
NC_004088.1	RefSeq	gene	2439067	2440179	.	-	.	ID=gene2269;Name=Y_RS11375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11375;old_locus_tag=y2207
NC_004088.1	Protein Homology	CDS	2439067	2440179	.	-	0	ID=cds2201;Parent=gene2269;Dbxref=Genbank:WP_002211721.1;Name=WP_002211721.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211721.1;transl_table=11
NC_004088.1	RefSeq	gene	2440180	2440821	.	-	.	ID=gene2270;Name=Y_RS11380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11380;old_locus_tag=y2208
NC_004088.1	Protein Homology	CDS	2440180	2440821	.	-	0	ID=cds2202;Parent=gene2270;Dbxref=Genbank:WP_002228446.1;Name=WP_002228446.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228446.1;transl_table=11
NC_004088.1	RefSeq	gene	2440840	2441568	.	-	.	ID=gene2271;Name=Y_RS11385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11385;old_locus_tag=y2209
NC_004088.1	Protein Homology	CDS	2440840	2441568	.	-	0	ID=cds2203;Parent=gene2271;Dbxref=Genbank:WP_002228445.1;Name=WP_002228445.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228445.1;transl_table=11
NC_004088.1	RefSeq	gene	2441568	2442542	.	-	.	ID=gene2272;Name=Y_RS11390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11390
NC_004088.1	Protein Homology	CDS	2441568	2442542	.	-	0	ID=cds2204;Parent=gene2272;Dbxref=Genbank:WP_002211722.1;Name=WP_002211722.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211722.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2442509	2443828	.	+	.	ID=id285;gbkey=repeat_region
NC_004088.1	RefSeq	region	2442512	2443826	.	-	.	ID=id286;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2442547	2443755	.	-	.	ID=gene2273;Name=Y_RS11395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11395;old_locus_tag=y2210
NC_004088.1	Protein Homology	CDS	2442547	2443755	.	-	0	ID=cds2205;Parent=gene2273;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2443803	2444381	.	-	.	ID=gene2274;Name=Y_RS11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11400
NC_004088.1	Protein Homology	CDS	2443803	2444381	.	-	0	ID=cds2206;Parent=gene2274;Dbxref=Genbank:WP_002215656.1;Name=WP_002215656.1;gbkey=CDS;product=terminase large subunit;protein_id=WP_002215656.1;transl_table=11
NC_004088.1	RefSeq	gene	2444391	2444840	.	-	.	ID=gene2275;Name=Y_RS11405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11405;old_locus_tag=y2212
NC_004088.1	Protein Homology	CDS	2444391	2444840	.	-	0	ID=cds2207;Parent=gene2275;Dbxref=Genbank:WP_002211724.1;Name=WP_002211724.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211724.1;transl_table=11
NC_004088.1	RefSeq	gene	2444871	2445506	.	-	.	ID=gene2276;Name=Y_RS11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11410;old_locus_tag=y2213
NC_004088.1	Protein Homology	CDS	2444871	2445506	.	-	0	ID=cds2208;Parent=gene2276;Dbxref=Genbank:WP_002211725.1;Name=WP_002211725.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211725.1;transl_table=11
NC_004088.1	RefSeq	gene	2445963	2446676	.	-	.	ID=gene2277;Name=Y_RS11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11415;old_locus_tag=y2214
NC_004088.1	Protein Homology	CDS	2445963	2446676	.	-	0	ID=cds2209;Parent=gene2277;Dbxref=Genbank:WP_002211727.1;Name=WP_002211727.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211727.1;transl_table=11
NC_004088.1	RefSeq	gene	2447222	2447680	.	-	.	ID=gene2278;Name=Y_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11420;old_locus_tag=y2215
NC_004088.1	Protein Homology	CDS	2447222	2447680	.	-	0	ID=cds2210;Parent=gene2278;Dbxref=Genbank:WP_002211729.1;Name=WP_002211729.1;gbkey=CDS;product=endopeptidase;protein_id=WP_002211729.1;transl_table=11
NC_004088.1	RefSeq	gene	2447665	2448177	.	-	.	ID=gene2279;Name=Y_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11425
NC_004088.1	Protein Homology	CDS	2447665	2448177	.	-	0	ID=cds2211;Parent=gene2279;Dbxref=Genbank:WP_002211730.1;Name=WP_002211730.1;gbkey=CDS;product=glycoside hydrolase;protein_id=WP_002211730.1;transl_table=11
NC_004088.1	RefSeq	gene	2448208	2448405	.	-	.	ID=gene2280;Name=Y_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11430
NC_004088.1	Protein Homology	CDS	2448208	2448405	.	-	0	ID=cds2212;Parent=gene2280;Dbxref=Genbank:WP_002430108.1;Name=WP_002430108.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002430108.1;transl_table=11
NC_004088.1	RefSeq	gene	2448651	2448926	.	+	.	ID=gene2281;Name=Y_RS11435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11435
NC_004088.1	Protein Homology	CDS	2448651	2448926	.	+	0	ID=cds2213;Parent=gene2281;Dbxref=Genbank:WP_002215644.1;Name=WP_002215644.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215644.1;transl_table=11
NC_004088.1	RefSeq	gene	2448923	2449132	.	-	.	ID=gene2282;Name=Y_RS11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11440;old_locus_tag=y2217
NC_004088.1	Protein Homology	CDS	2448923	2449132	.	-	0	ID=cds2214;Parent=gene2282;Dbxref=Genbank:WP_002211731.1;Name=WP_002211731.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211731.1;transl_table=11
NC_004088.1	RefSeq	gene	2449295	2449471	.	+	.	ID=gene2283;Name=Y_RS11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11445
NC_004088.1	Protein Homology	CDS	2449295	2449471	.	+	0	ID=cds2215;Parent=gene2283;Dbxref=Genbank:WP_002393183.1;Name=WP_002393183.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002393183.1;transl_table=11
NC_004088.1	RefSeq	gene	2449556	2450119	.	-	.	ID=gene2284;Name=Y_RS11450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11450;old_locus_tag=y2218
NC_004088.1	Protein Homology	CDS	2449556	2450119	.	-	0	ID=cds2216;Parent=gene2284;Dbxref=Genbank:WP_002211732.1;Name=WP_002211732.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211732.1;transl_table=11
NC_004088.1	RefSeq	gene	2450168	2450386	.	-	.	ID=gene2285;Name=Y_RS11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11455
NC_004088.1	Protein Homology	CDS	2450168	2450386	.	-	0	ID=cds2217;Parent=gene2285;Dbxref=Genbank:WP_002215638.1;Name=WP_002215638.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215638.1;transl_table=11
NC_004088.1	RefSeq	gene	2450390	2450779	.	-	.	ID=gene2286;Name=Y_RS11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11460;old_locus_tag=y2220
NC_004088.1	Protein Homology	CDS	2450390	2450779	.	-	0	ID=cds2218;Parent=gene2286;Dbxref=Genbank:WP_002215636.1;Name=WP_002215636.1;gbkey=CDS;product=antitermination protein;protein_id=WP_002215636.1;transl_table=11
NC_004088.1	RefSeq	gene	2450780	2451385	.	-	.	ID=gene2287;Name=Y_RS11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11465;old_locus_tag=y2222
NC_004088.1	Protein Homology	CDS	2450780	2451385	.	-	0	ID=cds2219;Parent=gene2287;Dbxref=Genbank:WP_002211735.1;Name=WP_002211735.1;gbkey=CDS;product=protein ninG;protein_id=WP_002211735.1;transl_table=11
NC_004088.1	RefSeq	gene	2451459	2451905	.	-	.	ID=gene2288;Name=Y_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11470;old_locus_tag=y2223
NC_004088.1	Protein Homology	CDS	2451459	2451905	.	-	0	ID=cds2220;Parent=gene2288;Dbxref=Genbank:WP_002211736.1;Name=WP_002211736.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211736.1;transl_table=11
NC_004088.1	RefSeq	gene	2451932	2452630	.	+	.	ID=gene2289;Name=Y_RS11475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11475;old_locus_tag=y2224
NC_004088.1	Protein Homology	CDS	2451932	2452630	.	+	0	ID=cds2221;Parent=gene2289;Dbxref=Genbank:WP_002211737.1;Name=WP_002211737.1;gbkey=CDS;product=DNA methyltransferase;protein_id=WP_002211737.1;transl_table=11
NC_004088.1	RefSeq	gene	2452930	2453190	.	+	.	ID=gene2290;Name=Y_RS11480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11480
NC_004088.1	Protein Homology	CDS	2452930	2453190	.	+	0	ID=cds2222;Parent=gene2290;Dbxref=Genbank:WP_002215632.1;Name=WP_002215632.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002215632.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2453290	2455248	.	+	.	ID=id287;gbkey=repeat_region
NC_004088.1	RefSeq	region	2453292	2455245	.	-	.	ID=id288;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2453358	2454137	.	-	.	ID=gene2291;Name=Y_RS11485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11485;old_locus_tag=y2225
NC_004088.1	Protein Homology	CDS	2453358	2454137	.	-	0	ID=cds2223;Parent=gene2291;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	2454137	2455159	.	-	.	ID=gene2292;Name=Y_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11490;old_locus_tag=y2226
NC_004088.1	Protein Homology	CDS	2454137	2455159	.	-	0	ID=cds2224;Parent=gene2292;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	2455229	2456467	.	+	.	ID=gene2293;Name=Y_RS11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11495;old_locus_tag=y2227
NC_004088.1	Protein Homology	CDS	2455229	2456467	.	+	0	ID=cds2225;Parent=gene2293;Dbxref=Genbank:WP_002211738.1;Name=WP_002211738.1;gbkey=CDS;product=integrase;protein_id=WP_002211738.1;transl_table=11
NC_004088.1	RefSeq	gene	2456494	2456940	.	-	.	ID=gene2294;Name=Y_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11500;old_locus_tag=y2228
NC_004088.1	Protein Homology	CDS	2456494	2456940	.	-	0	ID=cds2226;Parent=gene2294;Dbxref=Genbank:WP_002211739.1;Name=WP_002211739.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211739.1;transl_table=11
NC_004088.1	RefSeq	gene	2457043	2457699	.	-	.	ID=gene2295;Name=Y_RS11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11505;old_locus_tag=y2229
NC_004088.1	Protein Homology	CDS	2457043	2457699	.	-	0	ID=cds2227;Parent=gene2295;Dbxref=Genbank:WP_002211740.1;Name=WP_002211740.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211740.1;transl_table=11
NC_004088.1	RefSeq	gene	2457770	2458855	.	-	.	ID=gene2296;Name=Y_RS11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11510;old_locus_tag=y2230
NC_004088.1	Protein Homology	CDS	2457770	2458855	.	-	0	ID=cds2228;Parent=gene2296;Dbxref=Genbank:WP_002215627.1;Name=WP_002215627.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002215627.1;transl_table=11
NC_004088.1	RefSeq	gene	2458996	2459268	.	-	.	ID=gene2297;Name=Y_RS11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11515;old_locus_tag=y2231
NC_004088.1	Protein Homology	CDS	2458996	2459268	.	-	0	ID=cds2229;Parent=gene2297;Dbxref=Genbank:WP_002211743.1;Name=WP_002211743.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211743.1;transl_table=11
NC_004088.1	RefSeq	gene	2459989	2460675	.	+	.	ID=gene2298;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=Y_RS11520;old_locus_tag=y2232
NC_004088.1	Protein Homology	CDS	2459989	2460675	.	+	0	ID=cds2230;Parent=gene2298;Dbxref=Genbank:WP_002220631.1;Name=WP_002220631.1;Note=blocks the formation of polar Z-ring septums;gbkey=CDS;gene=minC;product=septum site-determining protein MinC;protein_id=WP_002220631.1;transl_table=11
NC_004088.1	RefSeq	gene	2460700	2461512	.	+	.	ID=gene2299;Name=Y_RS11525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11525;old_locus_tag=y2233
NC_004088.1	Protein Homology	CDS	2460700	2461512	.	+	0	ID=cds2231;Parent=gene2299;Dbxref=Genbank:WP_002211179.1;Name=WP_002211179.1;Note=ATPase%3B with MinC inhibits cell division by blocking formation of the polar Z ring septums;gbkey=CDS;product=cell division inhibitor MinD;protein_id=WP_002211179.1;transl_table=11
NC_004088.1	RefSeq	gene	2461516	2461785	.	+	.	ID=gene2300;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=Y_RS11530;old_locus_tag=y2234
NC_004088.1	Protein Homology	CDS	2461516	2461785	.	+	0	ID=cds2232;Parent=gene2300;Dbxref=Genbank:WP_002211180.1;Name=WP_002211180.1;Note=works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell;gbkey=CDS;gene=minE;product=cell division topological specificity factor;protein_id=WP_002211180.1;transl_table=11
NC_004088.1	RefSeq	gene	2462022	2463143	.	-	.	ID=gene2301;Name=Y_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11535;old_locus_tag=y2235
NC_004088.1	Protein Homology	CDS	2462022	2463143	.	-	0	ID=cds2233;Parent=gene2301;Dbxref=Genbank:WP_002211181.1;Name=WP_002211181.1;gbkey=CDS;product=ribonuclease D;protein_id=WP_002211181.1;transl_table=11
NC_004088.1	RefSeq	gene	2463303	2464991	.	-	.	ID=gene2302;Name=Y_RS11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11540;old_locus_tag=y2236
NC_004088.1	Protein Homology	CDS	2463303	2464991	.	-	0	ID=cds2234;Parent=gene2302;Dbxref=Genbank:WP_002220632.1;Name=WP_002220632.1;Note=Activates fatty acids by binding to coenzyme A;gbkey=CDS;product=long-chain fatty acid--CoA ligase;protein_id=WP_002220632.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2465483	2465598	.	+	.	ID=id289;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2465635	2466240	.	-	.	ID=gene2303;Name=Y_RS11545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11545;old_locus_tag=y2237
NC_004088.1	Protein Homology	CDS	2465635	2466240	.	-	0	ID=cds2235;Parent=gene2303;Dbxref=Genbank:WP_002211183.1;Name=WP_002211183.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211183.1;transl_table=11
NC_004088.1	RefSeq	gene	2466377	2467075	.	-	.	ID=gene2304;Name=Y_RS11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11550;old_locus_tag=y2238
NC_004088.1	Protein Homology	CDS	2466377	2467075	.	-	0	ID=cds2236;Parent=gene2304;Dbxref=Genbank:WP_002211184.1;Name=WP_002211184.1;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaB;protein_id=WP_002211184.1;transl_table=11
NC_004088.1	RefSeq	gene	2467147	2469051	.	-	.	ID=gene2305;Name=Y_RS11555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11555;old_locus_tag=y2239
NC_004088.1	Protein Homology	CDS	2467147	2469051	.	-	0	ID=cds2237;Parent=gene2305;Dbxref=Genbank:WP_002211185.1;Name=WP_002211185.1;gbkey=CDS;product=ATP-dependent helicase;protein_id=WP_002211185.1;transl_table=11
NC_004088.1	RefSeq	gene	2469182	2469526	.	+	.	ID=gene2306;Name=Y_RS11560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11560;old_locus_tag=y2240
NC_004088.1	Protein Homology	CDS	2469182	2469526	.	+	0	ID=cds2238;Parent=gene2306;Dbxref=Genbank:WP_002211186.1;Name=WP_002211186.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211186.1;transl_table=11
NC_004088.1	RefSeq	gene	2469658	2469987	.	-	.	ID=gene2307;Name=Y_RS11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11565;old_locus_tag=y2241
NC_004088.1	Protein Homology	CDS	2469658	2469987	.	-	0	ID=cds2239;Parent=gene2307;Dbxref=Genbank:WP_002211187.1;Name=WP_002211187.1;Note=with MdtJ is involved in resistance to deoxycholate%2C nalidixic acid%2C fosfomycin%2C and SDS;gbkey=CDS;product=spermidine export protein MdtI;protein_id=WP_002211187.1;transl_table=11
NC_004088.1	RefSeq	gene	2469974	2470417	.	-	.	ID=gene2308;Name=Y_RS11570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11570;old_locus_tag=y2242
NC_004088.1	Protein Homology	CDS	2469974	2470417	.	-	0	ID=cds2240;Parent=gene2308;Dbxref=Genbank:WP_002211188.1;Name=WP_002211188.1;gbkey=CDS;product=spermidine export protein MdtJ;protein_id=WP_002211188.1;transl_table=11
NC_004088.1	RefSeq	gene	2471132	2471773	.	-	.	ID=gene2309;Name=Y_RS11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11575;old_locus_tag=y2243
NC_004088.1	Protein Homology	CDS	2471132	2471773	.	-	0	ID=cds2241;Parent=gene2309;Dbxref=Genbank:WP_002211190.1;Name=WP_002211190.1;Note=catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate%3B or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate;gbkey=CDS;product=ketohydroxyglutarate aldolase;protein_id=WP_002211190.1;transl_table=11
NC_004088.1	RefSeq	gene	2472015	2473499	.	-	.	ID=gene2310;Name=Y_RS11580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11580;old_locus_tag=y2244
NC_004088.1	Protein Homology	CDS	2472015	2473499	.	-	0	ID=cds2242;Parent=gene2310;Dbxref=Genbank:WP_002211191.1;Name=WP_002211191.1;Note=catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate;gbkey=CDS;product=glucose-6-phosphate 1-dehydrogenase;protein_id=WP_002211191.1;transl_table=11
NC_004088.1	RefSeq	gene	2473852	2474721	.	+	.	ID=gene2311;Name=Y_RS11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11585;old_locus_tag=y2245
NC_004088.1	Protein Homology	CDS	2473852	2474721	.	+	0	ID=cds2243;Parent=gene2311;Dbxref=Genbank:WP_002211192.1;Name=WP_002211192.1;Note=Represses the expression of the zwf%2C eda%2C glp and gap;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002211192.1;transl_table=11
NC_004088.1	RefSeq	gene	2475051	2476493	.	+	.	ID=gene2312;Name=Y_RS11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11590;old_locus_tag=y2246
NC_004088.1	Protein Homology	CDS	2475051	2476493	.	+	0	ID=cds2244;Parent=gene2312;Dbxref=Genbank:WP_002211193.1;Name=WP_002211193.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=pyruvate kinase;protein_id=WP_002211193.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2476542	2476718	.	+	.	ID=id290;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2476838	2477800	.	-	.	ID=gene2313;Name=Y_RS11595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11595;old_locus_tag=y2247
NC_004088.1	Protein Homology	CDS	2476838	2477800	.	-	0	ID=cds2245;Parent=gene2313;Dbxref=Genbank:WP_002211194.1;Name=WP_002211194.1;gbkey=CDS;product=lipid A biosynthesis acyltransferase;protein_id=WP_002211194.1;transl_table=11
NC_004088.1	RefSeq	gene	2478067	2479383	.	-	.	ID=gene2314;Name=Y_RS11600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11600;old_locus_tag=y2248
NC_004088.1	Protein Homology	CDS	2478067	2479383	.	-	0	ID=cds2246;Parent=gene2314;Dbxref=Genbank:WP_002228437.1;Name=WP_002228437.1;gbkey=CDS;product=peptidase;protein_id=WP_002228437.1;transl_table=11
NC_004088.1	RefSeq	gene	2479404	2480360	.	-	.	ID=gene2315;Name=znuA;gbkey=Gene;gene=znuA;gene_biotype=protein_coding;gene_synonym=yebL;locus_tag=Y_RS11605;old_locus_tag=y2249
NC_004088.1	Protein Homology	CDS	2479404	2480360	.	-	0	ID=cds2247;Parent=gene2315;Dbxref=Genbank:WP_002227944.1;Name=WP_002227944.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuA;product=zinc uptake system protein ZnuA;protein_id=WP_002227944.1;transl_table=11
NC_004088.1	RefSeq	gene	2480436	2481194	.	+	.	ID=gene2316;Name=znuC;gbkey=Gene;gene=znuC;gene_biotype=protein_coding;gene_synonym=yebM;locus_tag=Y_RS11610;old_locus_tag=y2250
NC_004088.1	Protein Homology	CDS	2480436	2481194	.	+	0	ID=cds2248;Parent=gene2316;Dbxref=Genbank:WP_002228434.1;Name=WP_002228434.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuC;product=Mn2+/Zn2+ABC transporter ATP-binding protein;protein_id=WP_002228434.1;transl_table=11
NC_004088.1	RefSeq	gene	2481191	2481976	.	+	.	ID=gene2317;Name=znuB;gbkey=Gene;gene=znuB;gene_biotype=protein_coding;gene_synonym=yebI;locus_tag=Y_RS11615;old_locus_tag=y2251
NC_004088.1	Protein Homology	CDS	2481191	2481976	.	+	0	ID=cds2249;Parent=gene2317;Dbxref=Genbank:WP_002211197.1;Name=WP_002211197.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuB;product=zinc transporter;protein_id=WP_002211197.1;transl_table=11
NC_004088.1	RefSeq	gene	2482031	2483035	.	-	.	ID=gene2318;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=Y_RS11620;old_locus_tag=y2252
NC_004088.1	Protein Homology	CDS	2482031	2483035	.	-	0	ID=cds2250;Parent=gene2318;Dbxref=Genbank:WP_002211198.1;Name=WP_002211198.1;Note=promotes strand exchange during homologous recombination%3B RuvAB complex promotes branch migration%3B RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences%3B forms hexameric rings around opposite DNA arms%3B requires ATP for branch migration and orientation of RuvAB complex determines direction of migration;gbkey=CDS;gene=ruvB;product=Holliday junction DNA helicase RuvB;protein_id=WP_002211198.1;transl_table=11
NC_004088.1	RefSeq	gene	2483197	2483811	.	-	.	ID=gene2319;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=Y_RS11625;old_locus_tag=y2253
NC_004088.1	Protein Homology	CDS	2483197	2483811	.	-	0	ID=cds2251;Parent=gene2319;Dbxref=Genbank:WP_002211199.1;Name=WP_002211199.1;Note=plays an essential role in ATP-dependent branch migration of the Holliday junction;gbkey=CDS;gene=ruvA;product=Holliday junction DNA helicase RuvA;protein_id=WP_002211199.1;transl_table=11
NC_004088.1	RefSeq	gene	2484094	2484615	.	-	.	ID=gene2320;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=Y_RS11630;old_locus_tag=y2254
NC_004088.1	Protein Homology	CDS	2484094	2484615	.	-	0	ID=cds2252;Parent=gene2320;Dbxref=Genbank:WP_002211201.1;Name=WP_002211201.1;Note=endonuclease%3B resolves Holliday structures%3B forms a complex of RuvABC%3B the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration%3B RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity;gbkey=CDS;gene=ruvC;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_002211201.1;transl_table=11
NC_004088.1	RefSeq	gene	2484824	2485567	.	-	.	ID=gene2321;Name=Y_RS11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11635;old_locus_tag=y2255
NC_004088.1	Protein Homology	CDS	2484824	2485567	.	-	0	ID=cds2253;Parent=gene2321;Dbxref=Genbank:WP_002211202.1;Name=WP_002211202.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002211202.1;transl_table=11
NC_004088.1	RefSeq	gene	2485625	2486068	.	-	.	ID=gene2322;Name=nudB;gbkey=Gene;gene=nudB;gene_biotype=protein_coding;locus_tag=Y_RS11640;old_locus_tag=y2256
NC_004088.1	Protein Homology	CDS	2485625	2486068	.	-	0	ID=cds2254;Parent=gene2322;Dbxref=Genbank:WP_002211203.1;Name=WP_002211203.1;Note=catalyzes the formation of dihydroneopterin phosphate from dihydroneopterin triphosphate;gbkey=CDS;gene=nudB;product=dATP pyrophosphohydrolase;protein_id=WP_002211203.1;transl_table=11
NC_004088.1	RefSeq	gene	2486068	2487864	.	-	.	ID=gene2323;Name=Y_RS11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11645;old_locus_tag=y2258
NC_004088.1	Protein Homology	CDS	2486068	2487864	.	-	0	ID=cds2255;Parent=gene2323;Dbxref=Genbank:WP_002211204.1;Name=WP_002211204.1;gbkey=CDS;product=aspartate--tRNA ligase;protein_id=WP_002211204.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2488450	2488915	.	+	.	ID=id291;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2488922	2489737	.	+	.	ID=gene2324;Name=Y_RS11650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11650;old_locus_tag=y2259
NC_004088.1	Protein Homology	CDS	2488922	2489737	.	+	0	ID=cds2256;Parent=gene2324;Dbxref=Genbank:WP_002211205.1;Name=WP_002211205.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211205.1;transl_table=11
NC_004088.1	RefSeq	gene	2489917	2490312	.	+	.	ID=gene2325;Name=Y_RS11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11655;old_locus_tag=y2260
NC_004088.1	Protein Homology	CDS	2489917	2490312	.	+	0	ID=cds2257;Parent=gene2325;Dbxref=Genbank:WP_002211206.1;Name=WP_002211206.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211206.1;transl_table=11
NC_004088.1	RefSeq	gene	2490503	2491306	.	+	.	ID=gene2326;Name=Y_RS11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11660;old_locus_tag=y2261
NC_004088.1	Protein Homology	CDS	2490503	2491306	.	+	0	ID=cds2258;Parent=gene2326;Dbxref=Genbank:WP_002211207.1;Name=WP_002211207.1;gbkey=CDS;product=tRNA (cmo5U34)-methyltransferase;protein_id=WP_002211207.1;transl_table=11
NC_004088.1	RefSeq	gene	2491303	2492274	.	+	.	ID=gene2327;Name=Y_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11665;old_locus_tag=y2262
NC_004088.1	Protein Homology	CDS	2491303	2492274	.	+	0	ID=cds2259;Parent=gene2327;Dbxref=Genbank:WP_002211208.1;Name=WP_002211208.1;Note=catalyzes the conversion of 5-hydroxyuridine to 5-methoxyuridine in tRNA;gbkey=CDS;product=tRNA (mo5U34)-methyltransferase;protein_id=WP_002211208.1;transl_table=11
NC_004088.1	RefSeq	gene	2492467	2493231	.	-	.	ID=gene2328;Name=Y_RS11670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11670;old_locus_tag=y2263
NC_004088.1	Protein Homology	CDS	2492467	2493231	.	-	0	ID=cds2260;Parent=gene2328;Dbxref=Genbank:WP_002211209.1;Name=WP_002211209.1;gbkey=CDS;product=copper homeostasis protein CutC;protein_id=WP_002211209.1;transl_table=11
NC_004088.1	RefSeq	gene	2493463	2494038	.	-	.	ID=gene2329;Name=Y_RS11675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11675;old_locus_tag=y2264
NC_004088.1	Protein Homology	CDS	2493463	2494038	.	-	0	ID=cds2261;Parent=gene2329;Dbxref=Genbank:WP_002211210.1;Name=WP_002211210.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211210.1;transl_table=11
NC_004088.1	RefSeq	gene	2494665	2496395	.	+	.	ID=gene2330;Name=Y_RS11680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11680;old_locus_tag=y2266
NC_004088.1	Protein Homology	CDS	2494665	2496395	.	+	0	ID=cds2262;Parent=gene2330;Dbxref=Genbank:WP_002211212.1;Name=WP_002211212.1;gbkey=CDS;product=arginine--tRNA ligase;protein_id=WP_002211212.1;transl_table=11
NC_004088.1	RefSeq	gene	2496626	2501101	.	-	.	ID=gene2331;Name=Y_RS11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11685;old_locus_tag=y2267
NC_004088.1	Protein Homology	CDS	2496626	2501101	.	-	0	ID=cds2263;Parent=gene2331;Dbxref=Genbank:WP_002369860.1;Name=WP_002369860.1;gbkey=CDS;product=hemolysin;protein_id=WP_002369860.1;transl_table=11
NC_004088.1	RefSeq	gene	2501386	2503047	.	-	.	ID=gene2332;Name=Y_RS11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11690;old_locus_tag=y2268
NC_004088.1	Protein Homology	CDS	2501386	2503047	.	-	0	ID=cds2264;Parent=gene2332;Dbxref=Genbank:WP_002211213.1;Name=WP_002211213.1;gbkey=CDS;product=hemolysin activation protein;protein_id=WP_002211213.1;transl_table=11
NC_004088.1	RefSeq	gene	2503559	2505094	.	-	.	ID=gene2333;Name=Y_RS11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11695;old_locus_tag=y2269
NC_004088.1	Protein Homology	CDS	2503559	2505094	.	-	0	ID=cds2265;Parent=gene2333;Dbxref=Genbank:WP_002211214.1;Name=WP_002211214.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211214.1;transl_table=11
NC_004088.1	RefSeq	gene	2505361	2506272	.	-	.	ID=gene2334;Name=Y_RS11700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11700
NC_004088.1	Protein Homology	CDS	2505361	2506272	.	-	0	ID=cds2266;Parent=gene2334;Dbxref=Genbank:WP_002354211.1;Name=WP_002354211.1;gbkey=CDS;product=virulence factor MviM;protein_id=WP_002354211.1;transl_table=11
NC_004088.1	RefSeq	gene	2506979	2507563	.	-	.	ID=gene2335;Name=Y_RS11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11705;old_locus_tag=y2271
NC_004088.1	Protein Homology	CDS	2506979	2507563	.	-	0	ID=cds2267;Parent=gene2335;Dbxref=Genbank:WP_002211216.1;Name=WP_002211216.1;gbkey=CDS;product=alanine acetyltransferase;protein_id=WP_002211216.1;transl_table=11
NC_004088.1	RefSeq	gene	2507857	2509062	.	+	.	ID=gene2336;Name=Y_RS11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11710;old_locus_tag=y2272
NC_004088.1	Protein Homology	CDS	2507857	2509062	.	+	0	ID=cds2268;Parent=gene2336;Dbxref=Genbank:WP_002211217.1;Name=WP_002211217.1;Note=Confers resistance to norfloxacin and enoxacin;gbkey=CDS;product=multidrug resistance protein MdtH;protein_id=WP_002211217.1;transl_table=11
NC_004088.1	RefSeq	gene	2509457	2510020	.	+	.	ID=gene2337;Name=Y_RS11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11715;old_locus_tag=y2273
NC_004088.1	Protein Homology	CDS	2509457	2510020	.	+	0	ID=cds2269;Parent=gene2337;Dbxref=Genbank:WP_002211218.1;Name=WP_002211218.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002211218.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2510082	2510420	.	+	.	ID=id292;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2510474	2511034	.	-	.	ID=gene2338;Name=Y_RS11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11720;old_locus_tag=y2274
NC_004088.1	Protein Homology	CDS	2510474	2511034	.	-	0	ID=cds2270;Parent=gene2338;Dbxref=Genbank:WP_002211220.1;Name=WP_002211220.1;gbkey=CDS;product=molecular chaperone;protein_id=WP_002211220.1;transl_table=11
NC_004088.1	RefSeq	gene	2511071	2511808	.	-	.	ID=gene2339;Name=Y_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11725;old_locus_tag=y2275
NC_004088.1	Protein Homology	CDS	2511071	2511808	.	-	0	ID=cds2271;Parent=gene2339;Dbxref=Genbank:WP_002211221.1;Name=WP_002211221.1;gbkey=CDS;product=phosphatase;protein_id=WP_002211221.1;transl_table=11
NC_004088.1	RefSeq	gene	2512097	2512186	.	+	.	ID=gene2340;Name=Y_RS11730;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS11730;old_locus_tag=yt046
NC_004088.1	tRNAscan-SE	tRNA	2512097	2512186	.	+	.	ID=rna63;Parent=gene2340;anticodon=(pos:2512131..2512133);gbkey=tRNA;product=tRNA-Ser
NC_004088.1	tRNAscan-SE	exon	2512097	2512186	.	+	.	ID=id293;Parent=rna63;anticodon=(pos:2512131..2512133);gbkey=tRNA;product=tRNA-Ser
NC_004088.1	RefSeq	gene	2512443	2513555	.	-	.	ID=gene2341;Name=Y_RS11735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11735;old_locus_tag=y2276
NC_004088.1	Protein Homology	CDS	2512443	2513555	.	-	0	ID=cds2272;Parent=gene2341;Dbxref=Genbank:WP_002211222.1;Name=WP_002211222.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002211222.1;transl_table=11
NC_004088.1	RefSeq	gene	2513569	2514399	.	-	.	ID=gene2342;Name=Y_RS11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11740;old_locus_tag=y2277
NC_004088.1	Protein Homology	CDS	2513569	2514399	.	-	0	ID=cds2273;Parent=gene2342;Dbxref=Genbank:WP_002211223.1;Name=WP_002211223.1;gbkey=CDS;product=glycerophosphoryl diester phosphodiesterase;protein_id=WP_002211223.1;transl_table=11
NC_004088.1	RefSeq	gene	2514613	2514939	.	+	.	ID=gene2343;Name=Y_RS11745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11745
NC_004088.1	Protein Homology	CDS	2514613	2514939	.	+	0	ID=cds2274;Parent=gene2343;Dbxref=Genbank:WP_002211224.1;Name=WP_002211224.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002211224.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2514917	2515635	.	+	.	ID=id294;gbkey=repeat_region
NC_004088.1	RefSeq	region	2514921	2515630	.	-	.	ID=id295;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2515027	2515485	.	-	.	ID=gene2344;Name=Y_RS11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11750
NC_004088.1	Protein Homology	CDS	2515027	2515485	.	-	0	ID=cds2275;Parent=gene2344;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	2515653	2516390	.	+	.	ID=gene2345;Name=Y_RS11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11755
NC_004088.1	Protein Homology	CDS	2515653	2516390	.	+	0	ID=cds2276;Parent=gene2345;Dbxref=Genbank:WP_002211225.1;Name=WP_002211225.1;gbkey=CDS;product=ABC transporter;protein_id=WP_002211225.1;transl_table=11
NC_004088.1	RefSeq	gene	2516387	2517253	.	+	.	ID=gene2346;Name=Y_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11760;old_locus_tag=y2279
NC_004088.1	Protein Homology	CDS	2516387	2517253	.	+	0	ID=cds2277;Parent=gene2346;Dbxref=Genbank:WP_002211226.1;Name=WP_002211226.1;gbkey=CDS;product=spermidine/putrescine ABC transporter permease;protein_id=WP_002211226.1;transl_table=11
NC_004088.1	RefSeq	gene	2517250	2518086	.	+	.	ID=gene2347;Name=Y_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11765;old_locus_tag=y2280
NC_004088.1	Protein Homology	CDS	2517250	2518086	.	+	0	ID=cds2278;Parent=gene2347;Dbxref=Genbank:WP_002211227.1;Name=WP_002211227.1;gbkey=CDS;product=spermidine/putrescine ABC transporter permease;protein_id=WP_002211227.1;transl_table=11
NC_004088.1	RefSeq	gene	2518106	2519188	.	+	.	ID=gene2348;Name=Y_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11770;old_locus_tag=y2281
NC_004088.1	Protein Homology	CDS	2518106	2519188	.	+	0	ID=cds2279;Parent=gene2348;Dbxref=Genbank:WP_002211228.1;Name=WP_002211228.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002211228.1;transl_table=11
NC_004088.1	RefSeq	gene	2519489	2520364	.	+	.	ID=gene2349;Name=Y_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11775;old_locus_tag=y2283
NC_004088.1	Protein Homology	CDS	2519489	2520364	.	+	0	ID=cds2280;Parent=gene2349;Dbxref=Genbank:WP_002211229.1;Name=WP_002211229.1;gbkey=CDS;product=glycerophosphodiester phosphodiesterase;protein_id=WP_002211229.1;transl_table=11
NC_004088.1	RefSeq	gene	2520506	2520595	.	+	.	ID=gene2350;Name=Y_RS11780;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS11780;old_locus_tag=yt047
NC_004088.1	tRNAscan-SE	tRNA	2520506	2520595	.	+	.	ID=rna64;Parent=gene2350;anticodon=(pos:2520540..2520542);gbkey=tRNA;product=tRNA-Ser
NC_004088.1	tRNAscan-SE	exon	2520506	2520595	.	+	.	ID=id296;Parent=rna64;anticodon=(pos:2520540..2520542);gbkey=tRNA;product=tRNA-Ser
NC_004088.1	RefSeq	gene	2520897	2521193	.	+	.	ID=gene2351;Name=Y_RS11785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11785
NC_004088.1	Protein Homology	CDS	2520897	2521193	.	+	0	ID=cds2281;Parent=gene2351;Dbxref=Genbank:WP_002217150.1;Name=WP_002217150.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217150.1;transl_table=11
NC_004088.1	RefSeq	gene	2521432	2523129	.	+	.	ID=gene2352;Name=Y_RS11790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11790;old_locus_tag=y2285
NC_004088.1	Protein Homology	CDS	2521432	2523129	.	+	0	ID=cds2282;Parent=gene2352;Dbxref=Genbank:WP_002232899.1;Name=WP_002232899.1;Note=role in sulfate transport across the inner membrane%3B member of the SulP family of sulfate transporters%3B seems to mediate transport via sulfate/proton symport;gbkey=CDS;product=transporter;protein_id=WP_002232899.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2523172	2523343	.	+	.	ID=id297;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2523483	2524337	.	-	.	ID=gene2353;Name=Y_RS11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11795;old_locus_tag=y2286
NC_004088.1	Protein Homology	CDS	2523483	2524337	.	-	0	ID=cds2283;Parent=gene2353;Dbxref=Genbank:WP_002211232.1;Name=WP_002211232.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis;gbkey=CDS;product=2-dehydro-3-deoxyphosphooctonate aldolase;protein_id=WP_002211232.1;transl_table=11
NC_004088.1	RefSeq	gene	2524433	2525242	.	-	.	ID=gene2354;Name=Y_RS11800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11800;old_locus_tag=y2287
NC_004088.1	Protein Homology	CDS	2524433	2525242	.	-	0	ID=cds2284;Parent=gene2354;Dbxref=Genbank:WP_002211233.1;Name=WP_002211233.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002211233.1;transl_table=11
NC_004088.1	RefSeq	gene	2525239	2525640	.	-	.	ID=gene2355;Name=Y_RS11805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11805;old_locus_tag=y2288
NC_004088.1	Protein Homology	CDS	2525239	2525640	.	-	0	ID=cds2285;Parent=gene2355;Dbxref=Genbank:WP_002211234.1;Name=WP_002211234.1;gbkey=CDS;product=siroheme synthase;protein_id=WP_002211234.1;transl_table=11
NC_004088.1	RefSeq	gene	2525704	2526534	.	-	.	ID=gene2356;Name=Y_RS11810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11810;old_locus_tag=y2289
NC_004088.1	Protein Homology	CDS	2525704	2526534	.	-	0	ID=cds2286;Parent=gene2356;Dbxref=Genbank:WP_002211235.1;Name=WP_002211235.1;Note=HemK%3B PrmC%3B transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB;gbkey=CDS;product=release factor glutamine methyltransferase;protein_id=WP_002211235.1;transl_table=11
NC_004088.1	RefSeq	gene	2526534	2527616	.	-	.	ID=gene2357;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=Y_RS11815;old_locus_tag=y2290
NC_004088.1	Protein Homology	CDS	2526534	2527616	.	-	0	ID=cds2287;Parent=gene2357;Dbxref=Genbank:WP_002211236.1;Name=WP_002211236.1;Note=recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2;gbkey=CDS;gene=prfA;product=peptide chain release factor 1;protein_id=WP_002211236.1;transl_table=11
NC_004088.1	RefSeq	gene	2527649	2528911	.	-	.	ID=gene2358;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=Y_RS11820;old_locus_tag=y2291
NC_004088.1	Protein Homology	CDS	2527649	2528911	.	-	0	ID=cds2288;Parent=gene2358;Dbxref=Genbank:WP_002211237.1;Name=WP_002211237.1;Note=catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH%3B the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid%3B functions in porphyrin (tetrapyrroles) biosynthesis%3B the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins;gbkey=CDS;gene=hemA;product=glutamyl-tRNA reductase;protein_id=WP_002211237.1;transl_table=11
NC_004088.1	RefSeq	gene	2529217	2529840	.	+	.	ID=gene2359;Name=Y_RS11825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11825;old_locus_tag=y2292
NC_004088.1	Protein Homology	CDS	2529217	2529840	.	+	0	ID=cds2289;Parent=gene2359;Dbxref=Genbank:WP_002224468.1;Name=WP_002224468.1;gbkey=CDS;product=outer membrane lipoprotein LolB;protein_id=WP_002224468.1;transl_table=11
NC_004088.1	RefSeq	gene	2529842	2530741	.	+	.	ID=gene2360;Name=Y_RS11830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11830;old_locus_tag=y2293
NC_004088.1	Protein Homology	CDS	2529842	2530741	.	+	0	ID=cds2290;Parent=gene2360;Dbxref=Genbank:WP_002211239.1;Name=WP_002211239.1;gbkey=CDS;product=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;protein_id=WP_002211239.1;transl_table=11
NC_004088.1	RefSeq	gene	2530922	2531032	.	+	.	ID=gene2361;Name=Y_RS11835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11835
NC_004088.1	Protein Homology	CDS	2530922	2531032	.	+	0	ID=cds2291;Parent=gene2361;Dbxref=Genbank:WP_002218163.1;Name=WP_002218163.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002218163.1;transl_table=11
NC_004088.1	RefSeq	gene	2531082	2532029	.	+	.	ID=gene2362;Name=Y_RS11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11840;old_locus_tag=y2295
NC_004088.1	Protein Homology	CDS	2531082	2532029	.	+	0	ID=cds2292;Parent=gene2362;Dbxref=Genbank:WP_002211240.1;Name=WP_002211240.1;Note=catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP;gbkey=CDS;product=ribose-phosphate pyrophosphokinase;protein_id=WP_002211240.1;transl_table=11
NC_004088.1	RefSeq	gene	2532127	2532240	.	+	.	ID=gene2363;Name=Y_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11845
NC_004088.1	Protein Homology	CDS	2532127	2532240	.	+	0	ID=cds2293;Parent=gene2363;Dbxref=Genbank:WP_002211241.1;Name=WP_002211241.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211241.1;transl_table=11
NC_004088.1	RefSeq	gene	2532231	2532503	.	-	.	ID=gene2364;Name=Y_RS11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11850;old_locus_tag=y2296
NC_004088.1	Protein Homology	CDS	2532231	2532503	.	-	0	ID=cds2294;Parent=gene2364;Dbxref=Genbank:WP_002211242.1;Name=WP_002211242.1;Note=YchH%3B transcription activated by CRP (cyclic AMP receptor protein)%2C a global transcription factor involved in regulation of metabolism in enteric bacteria%3B ychH presents a class II promoter to bind CRP%3B unknown function;gbkey=CDS;product=membrane protein;protein_id=WP_002211242.1;transl_table=11
NC_004088.1	RefSeq	gene	2532865	2533455	.	+	.	ID=gene2365;Name=Y_RS11855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11855;old_locus_tag=y2297
NC_004088.1	Protein Homology	CDS	2532865	2533455	.	+	0	ID=cds2295;Parent=gene2365;Dbxref=Genbank:WP_002218168.1;Name=WP_002218168.1;gbkey=CDS;product=peptidyl-tRNA hydrolase;protein_id=WP_002218168.1;transl_table=11
NC_004088.1	RefSeq	gene	2533619	2534710	.	+	.	ID=gene2366;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=Y_RS11860;old_locus_tag=y2298
NC_004088.1	Protein Homology	CDS	2533619	2534710	.	+	0	ID=cds2296;Parent=gene2366;Dbxref=Genbank:WP_002211245.1;Name=WP_002211245.1;Note=EngD%3B translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1;gbkey=CDS;gene=ychF;product=GTP-binding protein;protein_id=WP_002211245.1;transl_table=11
NC_004088.1	RefSeq	gene	2535133	2535321	.	+	.	ID=gene2367;Name=Y_RS11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11865
NC_004088.1	Protein Homology	CDS	2535133	2535321	.	+	0	ID=cds2297;Parent=gene2367;Dbxref=Genbank:WP_002354205.1;Name=WP_002354205.1;gbkey=CDS;product=transposase;protein_id=WP_002354205.1;transl_table=11
NC_004088.1	RefSeq	gene	2535339	2535848	.	+	.	ID=gene2368;Name=Y_RS11870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11870;old_locus_tag=y2299
NC_004088.1	Protein Homology	CDS	2535339	2535848	.	+	0	ID=cds2298;Parent=gene2368;Dbxref=Genbank:WP_002211246.1;Name=WP_002211246.1;gbkey=CDS;product=integrase;protein_id=WP_002211246.1;transl_table=11
NC_004088.1	RefSeq	gene	2535896	2536294	.	-	.	ID=gene2369;Name=Y_RS11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11875;old_locus_tag=y2300
NC_004088.1	Protein Homology	CDS	2535896	2536294	.	-	0	ID=cds2299;Parent=gene2369;Dbxref=Genbank:WP_002211247.1;Name=WP_002211247.1;gbkey=CDS;product=rhodanese;protein_id=WP_002211247.1;transl_table=11
NC_004088.1	RefSeq	gene	2536302	2537132	.	-	.	ID=gene2370;Name=Y_RS11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11880;old_locus_tag=y2301
NC_004088.1	Protein Homology	CDS	2536302	2537132	.	-	0	ID=cds2300;Parent=gene2370;Dbxref=Genbank:WP_002211248.1;Name=WP_002211248.1;gbkey=CDS;product=esterase;protein_id=WP_002211248.1;transl_table=11
NC_004088.1	RefSeq	gene	2537129	2537785	.	-	.	ID=gene2371;Name=Y_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11885;old_locus_tag=y2302
NC_004088.1	Protein Homology	CDS	2537129	2537785	.	-	0	ID=cds2301;Parent=gene2371;Dbxref=Genbank:WP_002216887.1;Name=WP_002216887.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216887.1;transl_table=11
NC_004088.1	RefSeq	gene	2538416	2539258	.	+	.	ID=gene2372;Name=Y_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11890;old_locus_tag=y2303
NC_004088.1	Protein Homology	CDS	2538416	2539258	.	+	0	ID=cds2302;Parent=gene2372;Dbxref=Genbank:WP_002211249.1;Name=WP_002211249.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211249.1;transl_table=11
NC_004088.1	RefSeq	gene	2539467	2540162	.	-	.	ID=gene2373;Name=Y_RS11895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11895;old_locus_tag=y2304
NC_004088.1	Protein Homology	CDS	2539467	2540162	.	-	0	ID=cds2303;Parent=gene2373;Dbxref=Genbank:WP_002211250.1;Name=WP_002211250.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211250.1;transl_table=11
NC_004088.1	RefSeq	gene	2540177	2540842	.	-	.	ID=gene2374;Name=Y_RS11900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11900;old_locus_tag=y2305
NC_004088.1	Protein Homology	CDS	2540177	2540842	.	-	0	ID=cds2304;Parent=gene2374;Dbxref=Genbank:WP_002211251.1;Name=WP_002211251.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=flavodoxin;protein_id=WP_002211251.1;transl_table=11
NC_004088.1	RefSeq	gene	2541033	2542124	.	-	.	ID=gene2375;Name=Y_RS11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11905;old_locus_tag=y2306
NC_004088.1	Protein Homology	CDS	2541033	2542124	.	-	0	ID=cds2305;Parent=gene2375;Dbxref=Genbank:WP_002211252.1;Name=WP_002211252.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211252.1;transl_table=11
NC_004088.1	RefSeq	gene	2542389	2543081	.	+	.	ID=gene2376;Name=Y_RS11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11910;old_locus_tag=y2307
NC_004088.1	Protein Homology	CDS	2542389	2543081	.	+	0	ID=cds2306;Parent=gene2376;Dbxref=Genbank:WP_002211253.1;Name=WP_002211253.1;Note=response regulator in two-component regulatory system with CusS%3B regulates the copper efflux system;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002211253.1;transl_table=11
NC_004088.1	RefSeq	gene	2543093	2544478	.	+	.	ID=gene2377;Name=Y_RS11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11915;old_locus_tag=y2308
NC_004088.1	Protein Homology	CDS	2543093	2544478	.	+	0	ID=cds2307;Parent=gene2377;Dbxref=Genbank:WP_002211254.1;Name=WP_002211254.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_002211254.1;transl_table=11
NC_004088.1	RefSeq	gene	2544755	2545177	.	+	.	ID=gene2378;Name=Y_RS11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11920;old_locus_tag=y2310
NC_004088.1	Protein Homology	CDS	2544755	2545177	.	+	0	ID=cds2308;Parent=gene2378;Dbxref=Genbank:WP_002211255.1;Name=WP_002211255.1;gbkey=CDS;product=cytochrome D ubiquinol oxidase subunit II;protein_id=WP_002211255.1;transl_table=11
NC_004088.1	RefSeq	gene	2545232	2545702	.	+	.	ID=gene2379;Name=Y_RS11925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11925;old_locus_tag=y2311
NC_004088.1	Protein Homology	CDS	2545232	2545702	.	+	0	ID=cds2309;Parent=gene2379;Dbxref=Genbank:WP_002211256.1;Name=WP_002211256.1;gbkey=CDS;product=cupin;protein_id=WP_002211256.1;transl_table=11
NC_004088.1	RefSeq	gene	2545915	2546988	.	+	.	ID=gene2380;Name=Y_RS11930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11930;old_locus_tag=y2312
NC_004088.1	Protein Homology	CDS	2545915	2546988	.	+	0	ID=cds2310;Parent=gene2380;Dbxref=Genbank:WP_002211257.1;Name=WP_002211257.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_002211257.1;transl_table=11
NC_004088.1	RefSeq	gene	2547779	2548684	.	+	.	ID=gene2381;Name=Y_RS11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11935;old_locus_tag=y2313
NC_004088.1	Protein Homology	CDS	2547779	2548684	.	+	0	ID=cds2311;Parent=gene2381;Dbxref=Genbank:WP_002211258.1;Name=WP_002211258.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211258.1;transl_table=11
NC_004088.1	RefSeq	gene	2548690	2549622	.	+	.	ID=gene2382;Name=Y_RS11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11940;old_locus_tag=y2315
NC_004088.1	Protein Homology	CDS	2548690	2549622	.	+	0	ID=cds2312;Parent=gene2382;Dbxref=Genbank:WP_002211259.1;Name=WP_002211259.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211259.1;transl_table=11
NC_004088.1	RefSeq	gene	2549609	2550559	.	+	.	ID=gene2383;Name=Y_RS11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11945;old_locus_tag=y2316
NC_004088.1	Protein Homology	CDS	2549609	2550559	.	+	0	ID=cds2313;Parent=gene2383;Dbxref=Genbank:WP_002211260.1;Name=WP_002211260.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211260.1;transl_table=11
NC_004088.1	RefSeq	gene	2550900	2551580	.	+	.	ID=gene2384;Name=Y_RS11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11950;old_locus_tag=y2317
NC_004088.1	Protein Homology	CDS	2550900	2551580	.	+	0	ID=cds2314;Parent=gene2384;Dbxref=Genbank:WP_002211261.1;Name=WP_002211261.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_002211261.1;transl_table=11
NC_004088.1	RefSeq	gene	2551685	2552344	.	+	.	ID=gene2385;Name=Y_RS11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11955;old_locus_tag=y2318
NC_004088.1	Protein Homology	CDS	2551685	2552344	.	+	0	ID=cds2315;Parent=gene2385;Dbxref=Genbank:WP_002211262.1;Name=WP_002211262.1;gbkey=CDS;product=methyltransferase;protein_id=WP_002211262.1;transl_table=11
NC_004088.1	RefSeq	gene	2552479	2553117	.	-	.	ID=gene2386;Name=Y_RS11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11960;old_locus_tag=y2319
NC_004088.1	Protein Homology	CDS	2552479	2553117	.	-	0	ID=cds2316;Parent=gene2386;Dbxref=Genbank:WP_002211263.1;Name=WP_002211263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211263.1;transl_table=11
NC_004088.1	RefSeq	gene	2553173	2553361	.	+	.	ID=gene2387;Name=Y_RS11965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11965;old_locus_tag=y2320
NC_004088.1	Protein Homology	CDS	2553173	2553361	.	+	0	ID=cds2317;Parent=gene2387;Dbxref=Genbank:WP_002211264.1;Name=WP_002211264.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211264.1;transl_table=11
NC_004088.1	RefSeq	gene	2553364	2555475	.	-	.	ID=gene2388;Name=Y_RS11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11970;old_locus_tag=y2321
NC_004088.1	Protein Homology	CDS	2553364	2555475	.	-	0	ID=cds2318;Parent=gene2388;Dbxref=Genbank:WP_002224461.1;Name=WP_002224461.1;gbkey=CDS;product=membrane protein;protein_id=WP_002224461.1;transl_table=11
NC_004088.1	RefSeq	gene	2556053	2558215	.	+	.	ID=gene2389;Name=Y_RS11975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11975;old_locus_tag=y2322
NC_004088.1	Protein Homology	CDS	2556053	2558215	.	+	0	ID=cds2319;Parent=gene2389;Dbxref=Genbank:WP_002211266.1;Name=WP_002211266.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211266.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2558297	2559616	.	+	.	ID=id298;gbkey=repeat_region
NC_004088.1	RefSeq	region	2558300	2559614	.	-	.	ID=id299;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2558335	2559543	.	-	.	ID=gene2390;Name=Y_RS11980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11980;old_locus_tag=y2323
NC_004088.1	Protein Homology	CDS	2558335	2559543	.	-	0	ID=cds2320;Parent=gene2390;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2559662	2561320	.	+	.	ID=gene2391;Name=Y_RS11985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11985;old_locus_tag=y2324
NC_004088.1	Protein Homology	CDS	2559662	2561320	.	+	0	ID=cds2321;Parent=gene2391;Dbxref=Genbank:WP_002211267.1;Name=WP_002211267.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211267.1;transl_table=11
NC_004088.1	RefSeq	gene	2561490	2561954	.	+	.	ID=gene2392;Name=Y_RS11990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11990;old_locus_tag=y2325
NC_004088.1	Protein Homology	CDS	2561490	2561954	.	+	0	ID=cds2322;Parent=gene2392;Dbxref=Genbank:WP_002211268.1;Name=WP_002211268.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211268.1;transl_table=11
NC_004088.1	RefSeq	gene	2562115	2563302	.	-	.	ID=gene2393;Name=Y_RS11995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS11995;old_locus_tag=y2326
NC_004088.1	Protein Homology	CDS	2562115	2563302	.	-	0	ID=cds2323;Parent=gene2393;Dbxref=Genbank:WP_002211269.1;Name=WP_002211269.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_002211269.1;transl_table=11
NC_004088.1	RefSeq	gene	2563299	2563883	.	-	.	ID=gene2394;Name=Y_RS12000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12000;old_locus_tag=y2327
NC_004088.1	Protein Homology	CDS	2563299	2563883	.	-	0	ID=cds2324;Parent=gene2394;Dbxref=Genbank:WP_002211270.1;Name=WP_002211270.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211270.1;transl_table=11
NC_004088.1	RefSeq	gene	2563880	2565032	.	-	.	ID=gene2395;Name=Y_RS12005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS12005;old_locus_tag=y2328;pseudo=true
NC_004088.1	Protein Homology	CDS	2563880	2565032	.	-	0	ID=cds2325;Parent=gene2395;exception=annotated by transcript or proteomic data;gbkey=CDS;product=glycosyl transferase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2565032	2565994	.	-	.	ID=gene2396;Name=Y_RS12010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12010;old_locus_tag=y2329
NC_004088.1	Protein Homology	CDS	2565032	2565994	.	-	0	ID=cds2326;Parent=gene2396;Dbxref=Genbank:WP_002211271.1;Name=WP_002211271.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_002211271.1;transl_table=11
NC_004088.1	RefSeq	gene	2566128	2567414	.	-	.	ID=gene2397;Name=Y_RS12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12015;old_locus_tag=y2330
NC_004088.1	Protein Homology	CDS	2566128	2567414	.	-	0	ID=cds2327;Parent=gene2397;Dbxref=Genbank:WP_002211273.1;Name=WP_002211273.1;gbkey=CDS;product=coenzyme F390 synthetase;protein_id=WP_002211273.1;transl_table=11
NC_004088.1	RefSeq	gene	2567411	2568217	.	-	.	ID=gene2398;Name=Y_RS12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12020;old_locus_tag=y2332
NC_004088.1	Protein Homology	CDS	2567411	2568217	.	-	0	ID=cds2328;Parent=gene2398;Dbxref=Genbank:WP_002214335.1;Name=WP_002214335.1;gbkey=CDS;product=MBL fold hydrolase;protein_id=WP_002214335.1;transl_table=11
NC_004088.1	RefSeq	gene	2568210	2569226	.	-	.	ID=gene2399;Name=Y_RS12025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12025;old_locus_tag=y2333
NC_004088.1	Protein Homology	CDS	2568210	2569226	.	-	0	ID=cds2329;Parent=gene2399;Dbxref=Genbank:WP_002211275.1;Name=WP_002211275.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_002211275.1;transl_table=11
NC_004088.1	RefSeq	gene	2569240	2569770	.	-	.	ID=gene2400;Name=Y_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12030;old_locus_tag=y2334
NC_004088.1	Protein Homology	CDS	2569240	2569770	.	-	0	ID=cds2330;Parent=gene2400;Dbxref=Genbank:WP_002214337.1;Name=WP_002214337.1;gbkey=CDS;product=3-oxoacyl-ACP synthase;protein_id=WP_002214337.1;transl_table=11
NC_004088.1	RefSeq	gene	2569739	2570248	.	-	.	ID=gene2401;Name=Y_RS12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12035;old_locus_tag=y2335
NC_004088.1	Protein Homology	CDS	2569739	2570248	.	-	0	ID=cds2331;Parent=gene2401;Dbxref=Genbank:WP_002214339.1;Name=WP_002214339.1;gbkey=CDS;product=thiolase;protein_id=WP_002214339.1;transl_table=11
NC_004088.1	RefSeq	gene	2571251	2572855	.	+	.	ID=gene2402;Name=Y_RS12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12040;old_locus_tag=y2336
NC_004088.1	Protein Homology	CDS	2571251	2572855	.	+	0	ID=cds2332;Parent=gene2402;Dbxref=Genbank:WP_002211277.1;Name=WP_002211277.1;gbkey=CDS;product=chorismate-binding enzyme domain protein;protein_id=WP_002211277.1;transl_table=11
NC_004088.1	RefSeq	gene	2573033	2573605	.	-	.	ID=gene2403;Name=Y_RS12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12045;old_locus_tag=y2337
NC_004088.1	Protein Homology	CDS	2573033	2573605	.	-	0	ID=cds2333;Parent=gene2403;Dbxref=Genbank:WP_002211278.1;Name=WP_002211278.1;gbkey=CDS;product=cold inducible protein Ves;protein_id=WP_002211278.1;transl_table=11
NC_004088.1	RefSeq	gene	2573605	2574975	.	-	.	ID=gene2404;Name=Y_RS12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12050;old_locus_tag=y2338
NC_004088.1	Protein Homology	CDS	2573605	2574975	.	-	0	ID=cds2334;Parent=gene2404;Dbxref=Genbank:WP_002232930.1;Name=WP_002232930.1;Note=catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate;gbkey=CDS;product=N-formimino-L-glutamate deiminase;protein_id=WP_002232930.1;transl_table=11
NC_004088.1	RefSeq	gene	2575123	2575890	.	+	.	ID=gene2405;Name=Y_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12055;old_locus_tag=y2339
NC_004088.1	Protein Homology	CDS	2575123	2575890	.	+	0	ID=cds2335;Parent=gene2405;Dbxref=Genbank:WP_002211280.1;Name=WP_002211280.1;gbkey=CDS;product=histidine utilization repressor;protein_id=WP_002211280.1;transl_table=11
NC_004088.1	RefSeq	gene	2576094	2577314	.	+	.	ID=gene2406;Name=Y_RS12060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12060;old_locus_tag=y2340
NC_004088.1	Protein Homology	CDS	2576094	2577314	.	+	0	ID=cds2336;Parent=gene2406;Dbxref=Genbank:WP_002211281.1;Name=WP_002211281.1;Note=catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate%2C the third step in the histidine degradation pathway;gbkey=CDS;product=imidazolonepropionase;protein_id=WP_002211281.1;transl_table=11
NC_004088.1	RefSeq	gene	2577311	2578117	.	+	.	ID=gene2407;Name=Y_RS12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12065;old_locus_tag=y2341
NC_004088.1	Protein Homology	CDS	2577311	2578117	.	+	0	ID=cds2337;Parent=gene2407;Dbxref=Genbank:WP_002211282.1;Name=WP_002211282.1;gbkey=CDS;product=N-formylglutamate deformylase;protein_id=WP_002211282.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2578586	2580544	.	+	.	ID=id300;gbkey=repeat_region
NC_004088.1	RefSeq	region	2578588	2580541	.	-	.	ID=id301;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2578654	2579433	.	-	.	ID=gene2408;Name=Y_RS12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12070;old_locus_tag=y2342
NC_004088.1	Protein Homology	CDS	2578654	2579433	.	-	0	ID=cds2338;Parent=gene2408;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	2579433	2580455	.	-	.	ID=gene2409;Name=Y_RS12075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12075;old_locus_tag=y2343
NC_004088.1	Protein Homology	CDS	2579433	2580455	.	-	0	ID=cds2339;Parent=gene2409;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	2580469	2581416	.	-	.	ID=gene2410;Name=Y_RS12080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12080
NC_004088.1	Protein Homology	CDS	2580469	2581416	.	-	0	ID=cds2340;Parent=gene2410;Dbxref=Genbank:WP_002212026.1;Name=WP_002212026.1;gbkey=CDS;product=porin;protein_id=WP_002212026.1;transl_table=11
NC_004088.1	RefSeq	gene	2582144	2583136	.	-	.	ID=gene2411;Name=Y_RS12085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12085;old_locus_tag=y2345
NC_004088.1	Protein Homology	CDS	2582144	2583136	.	-	0	ID=cds2341;Parent=gene2411;Dbxref=Genbank:WP_002212028.1;Name=WP_002212028.1;gbkey=CDS;product=succinylglutamate desuccinylase;protein_id=WP_002212028.1;transl_table=11
NC_004088.1	RefSeq	gene	2583197	2584540	.	-	.	ID=gene2412;Name=Y_RS12090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12090;old_locus_tag=y2346
NC_004088.1	Protein Homology	CDS	2583197	2584540	.	-	0	ID=cds2342;Parent=gene2412;Dbxref=Genbank:WP_002212029.1;Name=WP_002212029.1;gbkey=CDS;product=N-succinylarginine dihydrolase;protein_id=WP_002212029.1;transl_table=11
NC_004088.1	RefSeq	gene	2584564	2586081	.	-	.	ID=gene2413;Name=astD;gbkey=Gene;gene=astD;gene_biotype=protein_coding;locus_tag=Y_RS12095;old_locus_tag=y2347
NC_004088.1	Protein Homology	CDS	2584564	2586081	.	-	0	ID=cds2343;Parent=gene2413;Dbxref=Genbank:WP_002212030.1;Name=WP_002212030.1;Note=a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity%3B converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH;gbkey=CDS;gene=astD;product=N-succinylglutamate 5-semialdehyde dehydrogenase;protein_id=WP_002212030.1;transl_table=11
NC_004088.1	RefSeq	gene	2586078	2587130	.	-	.	ID=gene2414;Name=Y_RS12100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12100;old_locus_tag=y2348
NC_004088.1	Protein Homology	CDS	2586078	2587130	.	-	0	ID=cds2344;Parent=gene2414;Dbxref=Genbank:WP_002212031.1;Name=WP_002212031.1;gbkey=CDS;product=arginine N-succinyltransferase;protein_id=WP_002212031.1;transl_table=11
NC_004088.1	RefSeq	gene	2587160	2588404	.	-	.	ID=gene2415;Name=Y_RS12105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12105;old_locus_tag=y2349
NC_004088.1	Protein Homology	CDS	2587160	2588404	.	-	0	ID=cds2345;Parent=gene2415;Dbxref=Genbank:WP_002216140.1;Name=WP_002216140.1;Note=catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate%3B also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate;gbkey=CDS;product=succinylornithine aminotransferase;protein_id=WP_002216140.1;transl_table=11
NC_004088.1	RefSeq	gene	2588602	2588745	.	-	.	ID=gene2416;Name=Y_RS12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12110
NC_004088.1	Protein Homology	CDS	2588602	2588745	.	-	0	ID=cds2346;Parent=gene2416;Dbxref=Genbank:WP_002353347.1;Name=WP_002353347.1;gbkey=CDS;product=membrane protein;protein_id=WP_002353347.1;transl_table=11
NC_004088.1	RefSeq	gene	2589041	2590462	.	-	.	ID=gene2417;Name=Y_RS12115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12115;old_locus_tag=y2350
NC_004088.1	Protein Homology	CDS	2589041	2590462	.	-	0	ID=cds2347;Parent=gene2417;Dbxref=Genbank:WP_002212033.1;Name=WP_002212033.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_002212033.1;transl_table=11
NC_004088.1	RefSeq	gene	2590772	2592553	.	+	.	ID=gene2418;Name=Y_RS12120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12120;old_locus_tag=y2351
NC_004088.1	Protein Homology	CDS	2590772	2592553	.	+	0	ID=cds2348;Parent=gene2418;Dbxref=Genbank:WP_002212035.1;Name=WP_002212035.1;gbkey=CDS;product=nitrate/nitrite two-component system sensor histidine kinase;protein_id=WP_002212035.1;transl_table=11
NC_004088.1	RefSeq	gene	2593102	2594202	.	+	.	ID=gene2419;Name=Y_RS12125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12125;old_locus_tag=y2352
NC_004088.1	Protein Homology	CDS	2593102	2594202	.	+	0	ID=cds2349;Parent=gene2419;Dbxref=Genbank:WP_002212036.1;Name=WP_002212036.1;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_002212036.1;transl_table=11
NC_004088.1	RefSeq	gene	2594305	2595093	.	-	.	ID=gene2420;Name=Y_RS12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12130;old_locus_tag=y2353
NC_004088.1	Protein Homology	CDS	2594305	2595093	.	-	0	ID=cds2350;Parent=gene2420;Dbxref=Genbank:WP_002212037.1;Name=WP_002212037.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212037.1;transl_table=11
NC_004088.1	RefSeq	gene	2595153	2595431	.	-	.	ID=gene2421;Name=Y_RS12135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12135;old_locus_tag=y2354
NC_004088.1	Protein Homology	CDS	2595153	2595431	.	-	0	ID=cds2351;Parent=gene2421;Dbxref=Genbank:WP_002212038.1;Name=WP_002212038.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212038.1;transl_table=11
NC_004088.1	RefSeq	gene	2595870	2596580	.	-	.	ID=gene2422;Name=Y_RS12140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12140
NC_004088.1	Protein Homology	CDS	2595870	2596580	.	-	0	ID=cds2352;Parent=gene2422;Dbxref=Genbank:WP_002367661.1;Name=WP_002367661.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_002367661.1;transl_table=11
NC_004088.1	RefSeq	gene	2597102	2597569	.	-	.	ID=gene2423;Name=hmsS;gbkey=Gene;gene=hmsS;gene_biotype=protein_coding;locus_tag=Y_RS12145;old_locus_tag=y2356
NC_004088.1	Protein Homology	CDS	2597102	2597569	.	-	0	ID=cds2353;Parent=gene2423;Dbxref=Genbank:WP_002212041.1;Name=WP_002212041.1;Note=in Yersinia this gene is involved in biofilm formation and hemin adsorption;gbkey=CDS;gene=hmsS;product=poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD;protein_id=WP_002212041.1;transl_table=11
NC_004088.1	RefSeq	gene	2597566	2598900	.	-	.	ID=gene2424;Name=Y_RS12150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12150;old_locus_tag=y2357
NC_004088.1	Protein Homology	CDS	2597566	2598900	.	-	0	ID=cds2354;Parent=gene2424;Dbxref=Genbank:WP_002224456.1;Name=WP_002224456.1;Note=predicted polysaccharide polymerase involved in biofilm formation%3B required for the synthesis of the beta-1%2C6-N-acetylglucosamine polysaccharide%3B PgaC%3B in Yersinia the HmsR protein is an inner membrane protein;gbkey=CDS;product=N-glycosyltransferase;protein_id=WP_002224456.1;transl_table=11
NC_004088.1	RefSeq	gene	2598890	2600911	.	-	.	ID=gene2425;Name=pgaB;gbkey=Gene;gene=pgaB;gene_biotype=protein_coding;locus_tag=Y_RS12155;old_locus_tag=y2358
NC_004088.1	Protein Homology	CDS	2598890	2600911	.	-	0	ID=cds2355;Parent=gene2425;Dbxref=Genbank:WP_002212043.1;Name=WP_002212043.1;Note=in Yersinia this protein is involved in biofilm formation and hemin adsorption%3B related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA) export;gbkey=CDS;gene=pgaB;product=biofilm PGA synthesis lipoprotein PgaB;protein_id=WP_002212043.1;transl_table=11
NC_004088.1	RefSeq	gene	2600924	2603392	.	-	.	ID=gene2426;Name=hmsH;gbkey=Gene;gene=hmsH;gene_biotype=protein_coding;locus_tag=Y_RS12160;old_locus_tag=y2359
NC_004088.1	Protein Homology	CDS	2600924	2603392	.	-	0	ID=cds2356;Parent=gene2426;Dbxref=Genbank:WP_002212044.1;Name=WP_002212044.1;Note=in Yersinia this protein is important for biofilm formation and hemin adsorption;gbkey=CDS;gene=hmsH;product=biofilm PGA synthesis protein pgaA;protein_id=WP_002212044.1;transl_table=11
NC_004088.1	RefSeq	gene	2604061	2605278	.	-	.	ID=gene2427;Name=Y_RS12165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12165;old_locus_tag=y2360
NC_004088.1	Protein Homology	CDS	2604061	2605278	.	-	0	ID=cds2357;Parent=gene2427;Dbxref=Genbank:WP_002212045.1;Name=WP_002212045.1;gbkey=CDS;product=endopeptidase;protein_id=WP_002212045.1;transl_table=11
NC_004088.1	RefSeq	gene	2605419	2606306	.	-	.	ID=gene2428;Name=Y_RS12170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12170;old_locus_tag=y2361
NC_004088.1	Protein Homology	CDS	2605419	2606306	.	-	0	ID=cds2358;Parent=gene2428;Dbxref=Genbank:WP_002212046.1;Name=WP_002212046.1;Note=with TehA confers resistance to tellurite;gbkey=CDS;product=tellurite resistance methyltransferase TehB;protein_id=WP_002212046.1;transl_table=11
NC_004088.1	RefSeq	gene	2606479	2606790	.	-	.	ID=gene2429;Name=Y_RS12175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12175;old_locus_tag=y2362
NC_004088.1	Protein Homology	CDS	2606479	2606790	.	-	0	ID=cds2359;Parent=gene2429;Dbxref=Genbank:WP_002227951.1;Name=WP_002227951.1;gbkey=CDS;product=cytochrome;protein_id=WP_002227951.1;transl_table=11
NC_004088.1	RefSeq	gene	2606790	2607287	.	-	.	ID=gene2430;Name=Y_RS12180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12180;old_locus_tag=y2363
NC_004088.1	Protein Homology	CDS	2606790	2607287	.	-	0	ID=cds2360;Parent=gene2430;Dbxref=Genbank:WP_002212048.1;Name=WP_002212048.1;gbkey=CDS;product=thioredoxin;protein_id=WP_002212048.1;transl_table=11
NC_004088.1	RefSeq	gene	2607277	2607990	.	-	.	ID=gene2431;Name=Y_RS12185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12185;old_locus_tag=y2364
NC_004088.1	Protein Homology	CDS	2607277	2607990	.	-	0	ID=cds2361;Parent=gene2431;Dbxref=Genbank:WP_002212049.1;Name=WP_002212049.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002212049.1;transl_table=11
NC_004088.1	RefSeq	gene	2607994	2609157	.	-	.	ID=gene2432;Name=Y_RS12190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12190;old_locus_tag=y2365
NC_004088.1	Protein Homology	CDS	2607994	2609157	.	-	0	ID=cds2362;Parent=gene2432;Dbxref=Genbank:WP_002212050.1;Name=WP_002212050.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002212050.1;transl_table=11
NC_004088.1	RefSeq	gene	2609147	2610439	.	-	.	ID=gene2433;Name=Y_RS12195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12195;old_locus_tag=y2366
NC_004088.1	Protein Homology	CDS	2609147	2610439	.	-	0	ID=cds2363;Parent=gene2433;Dbxref=Genbank:WP_002212051.1;Name=WP_002212051.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002212051.1;transl_table=11
NC_004088.1	RefSeq	gene	2610442	2611851	.	-	.	ID=gene2434;Name=Y_RS12200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12200;old_locus_tag=y2367
NC_004088.1	Protein Homology	CDS	2610442	2611851	.	-	0	ID=cds2364;Parent=gene2434;Dbxref=Genbank:WP_002212052.1;Name=WP_002212052.1;gbkey=CDS;product=membrane protein;protein_id=WP_002212052.1;transl_table=11
NC_004088.1	RefSeq	gene	2612152	2612679	.	-	.	ID=gene2435;Name=Y_RS12205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12205;old_locus_tag=y2368
NC_004088.1	Protein Homology	CDS	2612152	2612679	.	-	0	ID=cds2365;Parent=gene2435;Dbxref=Genbank:WP_002212053.1;Name=WP_002212053.1;gbkey=CDS;product=iron transporter;protein_id=WP_002212053.1;transl_table=11
NC_004088.1	RefSeq	gene	2612883	2614802	.	-	.	ID=gene2436;Name=Y_RS12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12210;old_locus_tag=y2370
NC_004088.1	Protein Homology	CDS	2612883	2614802	.	-	0	ID=cds2366;Parent=gene2436;Dbxref=Genbank:WP_002213978.1;Name=WP_002213978.1;gbkey=CDS;product=iron permease;protein_id=WP_002213978.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2615207	2615376	.	+	.	ID=id302;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2615383	2617023	.	-	.	ID=gene2437;Name=Y_RS12215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12215;old_locus_tag=y2371
NC_004088.1	Protein Homology	CDS	2615383	2617023	.	-	0	ID=cds2367;Parent=gene2437;Dbxref=Genbank:WP_002213976.1;Name=WP_002213976.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002213976.1;transl_table=11
NC_004088.1	RefSeq	gene	2617134	2618141	.	-	.	ID=gene2438;Name=Y_RS12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12220;old_locus_tag=y2372
NC_004088.1	Protein Homology	CDS	2617134	2618141	.	-	0	ID=cds2368;Parent=gene2438;Dbxref=Genbank:WP_002212056.1;Name=WP_002212056.1;Note=catalyzes the formation of glutamate from glutamine;gbkey=CDS;product=glutaminase;protein_id=WP_002212056.1;transl_table=11
NC_004088.1	RefSeq	gene	2619352	2620122	.	+	.	ID=gene2439;Name=Y_RS12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12225;old_locus_tag=y2373
NC_004088.1	Protein Homology	CDS	2619352	2620122	.	+	0	ID=cds2369;Parent=gene2439;Dbxref=Genbank:WP_002212058.1;Name=WP_002212058.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_002212058.1;transl_table=11
NC_004088.1	RefSeq	gene	2620844	2622373	.	+	.	ID=gene2440;Name=Y_RS12230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12230;old_locus_tag=y2374
NC_004088.1	Protein Homology	CDS	2620844	2622373	.	+	0	ID=cds2370;Parent=gene2440;Dbxref=Genbank:WP_002212059.1;Name=WP_002212059.1;Note=involved in the transporte of L-asparagine;gbkey=CDS;product=L-asparagine permease;protein_id=WP_002212059.1;transl_table=11
NC_004088.1	RefSeq	gene	2622569	2623729	.	-	.	ID=gene2441;Name=Y_RS12235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12235;old_locus_tag=y2375
NC_004088.1	Protein Homology	CDS	2622569	2623729	.	-	0	ID=cds2371;Parent=gene2441;Dbxref=Genbank:WP_002212060.1;Name=WP_002212060.1;gbkey=CDS;product=aminotransferase;protein_id=WP_002212060.1;transl_table=11
NC_004088.1	RefSeq	gene	2624081	2624680	.	+	.	ID=gene2442;Name=Y_RS12240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12240;old_locus_tag=y2376
NC_004088.1	Protein Homology	CDS	2624081	2624680	.	+	0	ID=cds2372;Parent=gene2442;Dbxref=Genbank:WP_002212061.1;Name=WP_002212061.1;Note=Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol.;gbkey=CDS;product=Na+-translocating NADH-quinone reductase subunit E;protein_id=WP_002212061.1;transl_table=11
NC_004088.1	RefSeq	gene	2624985	2625947	.	-	.	ID=gene2443;Name=Y_RS12245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12245;old_locus_tag=y2377
NC_004088.1	Protein Homology	CDS	2624985	2625947	.	-	0	ID=cds2373;Parent=gene2443;Dbxref=Genbank:WP_002212062.1;Name=WP_002212062.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002212062.1;transl_table=11
NC_004088.1	RefSeq	gene	2626059	2626928	.	+	.	ID=gene2444;Name=Y_RS12250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12250;old_locus_tag=y2378
NC_004088.1	Protein Homology	CDS	2626059	2626928	.	+	0	ID=cds2374;Parent=gene2444;Dbxref=Genbank:WP_002212063.1;Name=WP_002212063.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_002212063.1;transl_table=11
NC_004088.1	RefSeq	gene	2626994	2628223	.	+	.	ID=gene2445;Name=Y_RS12255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12255;old_locus_tag=y2379
NC_004088.1	Protein Homology	CDS	2626994	2628223	.	+	0	ID=cds2375;Parent=gene2445;Dbxref=Genbank:WP_002212064.1;Name=WP_002212064.1;gbkey=CDS;product=sugar transporter;protein_id=WP_002212064.1;transl_table=11
NC_004088.1	RefSeq	gene	2628443	2629003	.	+	.	ID=gene2446;Name=Y_RS12260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12260;old_locus_tag=y2380
NC_004088.1	Protein Homology	CDS	2628443	2629003	.	+	0	ID=cds2376;Parent=gene2446;Dbxref=Genbank:WP_002212065.1;Name=WP_002212065.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212065.1;transl_table=11
NC_004088.1	RefSeq	gene	2629028	2629501	.	+	.	ID=gene2447;Name=Y_RS12265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12265;old_locus_tag=y2381
NC_004088.1	Protein Homology	CDS	2629028	2629501	.	+	0	ID=cds2377;Parent=gene2447;Dbxref=Genbank:WP_002212066.1;Name=WP_002212066.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002212066.1;transl_table=11
NC_004088.1	RefSeq	gene	2629576	2630454	.	-	.	ID=gene2448;Name=Y_RS12270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12270;old_locus_tag=y2382
NC_004088.1	Protein Homology	CDS	2629576	2630454	.	-	0	ID=cds2378;Parent=gene2448;Dbxref=Genbank:WP_002212067.1;Name=WP_002212067.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002212067.1;transl_table=11
NC_004088.1	RefSeq	gene	2630549	2631391	.	+	.	ID=gene2449;Name=Y_RS12275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12275;old_locus_tag=y2383
NC_004088.1	Protein Homology	CDS	2630549	2631391	.	+	0	ID=cds2379;Parent=gene2449;Dbxref=Genbank:WP_002212068.1;Name=WP_002212068.1;gbkey=CDS;product=citrate lyase subunit beta;protein_id=WP_002212068.1;transl_table=11
NC_004088.1	RefSeq	gene	2631456	2631983	.	+	.	ID=gene2450;Name=Y_RS12280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12280;old_locus_tag=y2384
NC_004088.1	Protein Homology	CDS	2631456	2631983	.	+	0	ID=cds2380;Parent=gene2450;Dbxref=Genbank:WP_002212069.1;Name=WP_002212069.1;gbkey=CDS;product=molybdenum cofactor biosynthesis protein MoeC;protein_id=WP_002212069.1;transl_table=11
NC_004088.1	RefSeq	gene	2632006	2633328	.	+	.	ID=gene2451;Name=Y_RS12285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12285;old_locus_tag=y2385
NC_004088.1	Protein Homology	CDS	2632006	2633328	.	+	0	ID=cds2381;Parent=gene2451;Dbxref=Genbank:WP_002212070.1;Name=WP_002212070.1;gbkey=CDS;product=4-hydroxybutyrate CoA-transferase;protein_id=WP_002212070.1;transl_table=11
NC_004088.1	RefSeq	gene	2634154	2634786	.	+	.	ID=gene2452;Name=Y_RS12290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12290;old_locus_tag=y2386
NC_004088.1	Protein Homology	CDS	2634154	2634786	.	+	0	ID=cds2382;Parent=gene2452;Dbxref=Genbank:WP_002212073.1;Name=WP_002212073.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_002212073.1;transl_table=11
NC_004088.1	RefSeq	gene	2634884	2638612	.	+	.	ID=gene2453;Name=Y_RS12295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12295;old_locus_tag=y2387
NC_004088.1	Protein Homology	CDS	2634884	2638612	.	+	0	ID=cds2383;Parent=gene2453;Dbxref=Genbank:WP_002220434.1;Name=WP_002220434.1;gbkey=CDS;product=histidine protein kinase;protein_id=WP_002220434.1;transl_table=11
NC_004088.1	RefSeq	gene	2639124	2639654	.	+	.	ID=gene2454;Name=Y_RS12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12300;old_locus_tag=y2388
NC_004088.1	Protein Homology	CDS	2639124	2639654	.	+	0	ID=cds2384;Parent=gene2454;Dbxref=Genbank:WP_002213971.1;Name=WP_002213971.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002213971.1;transl_table=11
NC_004088.1	RefSeq	gene	2639747	2640391	.	+	.	ID=gene2455;Name=Y_RS12305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12305;old_locus_tag=y2389
NC_004088.1	Protein Homology	CDS	2639747	2640391	.	+	0	ID=cds2385;Parent=gene2455;Dbxref=Genbank:WP_002212747.1;Name=WP_002212747.1;gbkey=CDS;product=pilus assembly protein;protein_id=WP_002212747.1;transl_table=11
NC_004088.1	RefSeq	gene	2640467	2643031	.	+	.	ID=gene2456;Name=Y_RS12310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12310;old_locus_tag=y2390
NC_004088.1	Protein Homology	CDS	2640467	2643031	.	+	0	ID=cds2386;Parent=gene2456;Dbxref=Genbank:WP_002212750.1;Name=WP_002212750.1;gbkey=CDS;product=ferrous iron transporter B;protein_id=WP_002212750.1;transl_table=11
NC_004088.1	RefSeq	gene	2643047	2644396	.	+	.	ID=gene2457;Name=Y_RS12315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12315;old_locus_tag=y2391
NC_004088.1	Protein Homology	CDS	2643047	2644396	.	+	0	ID=cds2387;Parent=gene2457;Dbxref=Genbank:WP_002213964.1;Name=WP_002213964.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213964.1;transl_table=11
NC_004088.1	RefSeq	gene	2644393	2645133	.	+	.	ID=gene2458;Name=Y_RS12320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12320;old_locus_tag=y2392
NC_004088.1	Protein Homology	CDS	2644393	2645133	.	+	0	ID=cds2388;Parent=gene2458;Dbxref=Genbank:WP_002227954.1;Name=WP_002227954.1;gbkey=CDS;product=pilus assembly protein;protein_id=WP_002227954.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2645406	2645512	.	+	.	ID=id303;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2645436	2645511	.	+	.	ID=gene2459;Name=Y_RS12325;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS12325;old_locus_tag=yt048
NC_004088.1	tRNAscan-SE	tRNA	2645436	2645511	.	+	.	ID=rna65;Parent=gene2459;anticodon=(pos:2645469..2645471);gbkey=tRNA;product=tRNA-Asn
NC_004088.1	tRNAscan-SE	exon	2645436	2645511	.	+	.	ID=id304;Parent=rna65;anticodon=(pos:2645469..2645471);gbkey=tRNA;product=tRNA-Asn
NC_004088.1	RefSeq	gene	2645673	2646935	.	+	.	ID=gene2460;Name=Y_RS12330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12330;old_locus_tag=y2393
NC_004088.1	Protein Homology	CDS	2645673	2646935	.	+	0	ID=cds2389;Parent=gene2460;Dbxref=Genbank:WP_002212753.1;Name=WP_002212753.1;gbkey=CDS;product=integrase;protein_id=WP_002212753.1;transl_table=11
NC_004088.1	RefSeq	gene	2647129	2648433	.	-	.	ID=gene2461;Name=Y_RS12335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12335;old_locus_tag=y2394
NC_004088.1	Protein Homology	CDS	2647129	2648433	.	-	0	ID=cds2390;Parent=gene2461;Dbxref=Genbank:WP_000703040.1;Name=WP_000703040.1;Note=catalyzes the conversion of chorismate to salicylate in the biosynthesis of the siderophore yersiniabactin;gbkey=CDS;product=salicylate synthase;protein_id=WP_000703040.1;transl_table=11
NC_004088.1	RefSeq	gene	2648461	2649741	.	-	.	ID=gene2462;Name=Y_RS12340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12340;old_locus_tag=y2395
NC_004088.1	Protein Homology	CDS	2648461	2649741	.	-	0	ID=cds2391;Parent=gene2462;Dbxref=Genbank:WP_001286280.1;Name=WP_001286280.1;gbkey=CDS;product=signal transducer;protein_id=WP_001286280.1;transl_table=11
NC_004088.1	RefSeq	gene	2649734	2651536	.	-	.	ID=gene2463;Name=Y_RS12345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12345;old_locus_tag=y2396
NC_004088.1	Protein Homology	CDS	2649734	2651536	.	-	0	ID=cds2392;Parent=gene2463;Dbxref=Genbank:WP_002212761.1;Name=WP_002212761.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002212761.1;transl_table=11
NC_004088.1	RefSeq	gene	2651523	2653235	.	-	.	ID=gene2464;Name=Y_RS12350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12350;old_locus_tag=y2397
NC_004088.1	Protein Homology	CDS	2651523	2653235	.	-	0	ID=cds2393;Parent=gene2464;Dbxref=Genbank:WP_001327262.1;Name=WP_001327262.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_001327262.1;transl_table=11
NC_004088.1	RefSeq	gene	2653492	2654451	.	+	.	ID=gene2465;Name=Y_RS12355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12355;old_locus_tag=y2398
NC_004088.1	Protein Homology	CDS	2653492	2654451	.	+	0	ID=cds2394;Parent=gene2465;Dbxref=Genbank:WP_000140406.1;Name=WP_000140406.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_000140406.1;transl_table=11
NC_004088.1	RefSeq	gene	2654642	2660749	.	+	.	ID=gene2466;Name=Y_RS12360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12360;old_locus_tag=y2399
NC_004088.1	Protein Homology	CDS	2654642	2660749	.	+	0	ID=cds2395;Parent=gene2466;Dbxref=Genbank:WP_002212775.1;Name=WP_002212775.1;gbkey=CDS;product=non-ribosomal peptide synthetase;protein_id=WP_002212775.1;transl_table=11
NC_004088.1	RefSeq	gene	2660837	2670328	.	+	.	ID=gene2467;Name=Y_RS12365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12365;old_locus_tag=y2400
NC_004088.1	Protein Homology	CDS	2660837	2670328	.	+	0	ID=cds2396;Parent=gene2467;Dbxref=Genbank:WP_002212777.1;Name=WP_002212777.1;gbkey=CDS;product=polyketide synthase;protein_id=WP_002212777.1;transl_table=11
NC_004088.1	RefSeq	gene	2670325	2671425	.	+	.	ID=gene2468;Name=Y_RS12370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12370;old_locus_tag=y2401
NC_004088.1	Protein Homology	CDS	2670325	2671425	.	+	0	ID=cds2397;Parent=gene2468;Dbxref=Genbank:WP_000982866.1;Name=WP_000982866.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000982866.1;transl_table=11
NC_004088.1	RefSeq	gene	2671422	2672225	.	+	.	ID=gene2469;Name=Y_RS12375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12375;old_locus_tag=y2402
NC_004088.1	Protein Homology	CDS	2671422	2672225	.	+	0	ID=cds2398;Parent=gene2469;Dbxref=Genbank:WP_002212799.1;Name=WP_002212799.1;gbkey=CDS;product=thioesterase;protein_id=WP_002212799.1;transl_table=11
NC_004088.1	RefSeq	gene	2672229	2673806	.	+	.	ID=gene2470;Name=Y_RS12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12380;old_locus_tag=y2403
NC_004088.1	Protein Homology	CDS	2672229	2673806	.	+	0	ID=cds2399;Parent=gene2470;Dbxref=Genbank:WP_001088826.1;Name=WP_001088826.1;gbkey=CDS;product=salicyl-AMP ligase;protein_id=WP_001088826.1;transl_table=11
NC_004088.1	RefSeq	gene	2673937	2675958	.	+	.	ID=gene2471;Name=Y_RS12385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12385;old_locus_tag=y2404
NC_004088.1	Protein Homology	CDS	2673937	2675958	.	+	0	ID=cds2400;Parent=gene2471;Dbxref=Genbank:WP_002212885.1;Name=WP_002212885.1;gbkey=CDS;product=pesticin receptor;protein_id=WP_002212885.1;transl_table=11
NC_004088.1	RefSeq	gene	2676831	2677181	.	+	.	ID=gene2472;Name=Y_RS12390;end_range=2677181,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS12390;partial=true;pseudo=true
NC_004088.1	Protein Homology	CDS	2676831	2677181	.	+	0	ID=cds2401;Parent=gene2472;end_range=2677181,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2677324	2677758	.	+	.	ID=gene2473;Name=Y_RS12395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12395
NC_004088.1	Protein Homology	CDS	2677324	2677758	.	+	0	ID=cds2402;Parent=gene2473;Dbxref=Genbank:WP_002212886.1;Name=WP_002212886.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212886.1;transl_table=11
NC_004088.1	RefSeq	gene	2677898	2678083	.	+	.	ID=gene2474;Name=Y_RS12400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12400
NC_004088.1	Protein Homology	CDS	2677898	2678083	.	+	0	ID=cds2403;Parent=gene2474;Dbxref=Genbank:WP_000205185.1;Name=WP_000205185.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000205185.1;transl_table=11
NC_004088.1	RefSeq	gene	2678105	2678266	.	+	.	ID=gene2475;Name=Y_RS12405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12405
NC_004088.1	Protein Homology	CDS	2678105	2678266	.	+	0	ID=cds2404;Parent=gene2475;Dbxref=Genbank:WP_002214391.1;Name=WP_002214391.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214391.1;transl_table=11
NC_004088.1	RefSeq	gene	2678272	2678853	.	+	.	ID=gene2476;Name=Y_RS12410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12410;old_locus_tag=y2407
NC_004088.1	Protein Homology	CDS	2678272	2678853	.	+	0	ID=cds2405;Parent=gene2476;Dbxref=Genbank:WP_000937857.1;Name=WP_000937857.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000937857.1;transl_table=11
NC_004088.1	RefSeq	gene	2679295	2679408	.	+	.	ID=gene2477;Name=Y_RS12420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12420;old_locus_tag=y2409
NC_004088.1	Protein Homology	CDS	2679295	2679408	.	+	0	ID=cds2406;Parent=gene2477;Dbxref=Genbank:WP_002212894.1;Name=WP_002212894.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212894.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2679383	2681342	.	+	.	ID=id305;gbkey=repeat_region
NC_004088.1	RefSeq	region	2679386	2681339	.	-	.	ID=id306;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2679452	2680231	.	-	.	ID=gene2478;Name=Y_RS12425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12425;old_locus_tag=y2410
NC_004088.1	Protein Homology	CDS	2679452	2680231	.	-	0	ID=cds2407;Parent=gene2478;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	2680231	2681253	.	-	.	ID=gene2479;Name=Y_RS12430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12430;old_locus_tag=y2411
NC_004088.1	Protein Homology	CDS	2680231	2681253	.	-	0	ID=cds2408;Parent=gene2479;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	2681310	2681537	.	+	.	ID=gene2480;Name=Y_RS12435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12435
NC_004088.1	Protein Homology	CDS	2681310	2681537	.	+	0	ID=cds2409;Parent=gene2480;Dbxref=Genbank:WP_002215429.1;Name=WP_002215429.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215429.1;transl_table=11
NC_004088.1	RefSeq	gene	2681521	2681643	.	-	.	ID=gene2481;Name=Y_RS12440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12440
NC_004088.1	Protein Homology	CDS	2681521	2681643	.	-	0	ID=cds2410;Parent=gene2481;Dbxref=Genbank:WP_002213181.1;Name=WP_002213181.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213181.1;transl_table=11
NC_004088.1	RefSeq	gene	2681731	2681916	.	+	.	ID=gene2482;Name=Y_RS12445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12445
NC_004088.1	Protein Homology	CDS	2681731	2681916	.	+	0	ID=cds2411;Parent=gene2482;Dbxref=Genbank:WP_002215428.1;Name=WP_002215428.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215428.1;transl_table=11
NC_004088.1	RefSeq	gene	2681932	2682156	.	+	.	ID=gene2483;Name=Y_RS12450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12450;old_locus_tag=y2412
NC_004088.1	Protein Homology	CDS	2681932	2682156	.	+	0	ID=cds2412;Parent=gene2483;Dbxref=Genbank:WP_002213183.1;Name=WP_002213183.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213183.1;transl_table=11
NC_004088.1	RefSeq	gene	2682166	2682318	.	-	.	ID=gene2484;Name=Y_RS12455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12455
NC_004088.1	Protein Homology	CDS	2682166	2682318	.	-	0	ID=cds2413;Parent=gene2484;Dbxref=Genbank:WP_002231175.1;Name=WP_002231175.1;gbkey=CDS;product=sugar ABC transporter ATPase;protein_id=WP_002231175.1;transl_table=11
NC_004088.1	RefSeq	gene	2682393	2683283	.	-	.	ID=gene2485;Name=Y_RS12460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12460;old_locus_tag=y2414
NC_004088.1	Protein Homology	CDS	2682393	2683283	.	-	0	ID=cds2414;Parent=gene2485;Dbxref=Genbank:WP_002215425.1;Name=WP_002215425.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002215425.1;transl_table=11
NC_004088.1	RefSeq	gene	2683308	2684135	.	-	.	ID=gene2486;Name=Y_RS12465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12465;old_locus_tag=y2415
NC_004088.1	Protein Homology	CDS	2683308	2684135	.	-	0	ID=cds2415;Parent=gene2486;Dbxref=Genbank:WP_002213186.1;Name=WP_002213186.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002213186.1;transl_table=11
NC_004088.1	RefSeq	gene	2684128	2684988	.	-	.	ID=gene2487;Name=Y_RS12470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12470;old_locus_tag=y2416
NC_004088.1	Protein Homology	CDS	2684128	2684988	.	-	0	ID=cds2416;Parent=gene2487;Dbxref=Genbank:WP_002213188.1;Name=WP_002213188.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002213188.1;transl_table=11
NC_004088.1	RefSeq	gene	2685055	2686323	.	-	.	ID=gene2488;Name=Y_RS12475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12475;old_locus_tag=y2417
NC_004088.1	Protein Homology	CDS	2685055	2686323	.	-	0	ID=cds2417;Parent=gene2488;Dbxref=Genbank:WP_002213190.1;Name=WP_002213190.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002213190.1;transl_table=11
NC_004088.1	RefSeq	gene	2686353	2687366	.	-	.	ID=gene2489;Name=Y_RS12480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12480;old_locus_tag=y2418
NC_004088.1	Protein Homology	CDS	2686353	2687366	.	-	0	ID=cds2418;Parent=gene2489;Dbxref=Genbank:WP_002213192.1;Name=WP_002213192.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002213192.1;transl_table=11
NC_004088.1	RefSeq	gene	2687774	2688058	.	+	.	ID=gene2490;Name=Y_RS12485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12485
NC_004088.1	Protein Homology	CDS	2687774	2688058	.	+	0	ID=cds2419;Parent=gene2490;Dbxref=Genbank:WP_002228532.1;Name=WP_002228532.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002228532.1;transl_table=11
NC_004088.1	RefSeq	gene	2688028	2688825	.	-	.	ID=gene2491;Name=Y_RS12490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12490;old_locus_tag=y2419
NC_004088.1	Protein Homology	CDS	2688028	2688825	.	-	0	ID=cds2420;Parent=gene2491;Dbxref=Genbank:WP_002213201.1;Name=WP_002213201.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_002213201.1;transl_table=11
NC_004088.1	RefSeq	gene	2689012	2689116	.	-	.	ID=gene2492;Name=Y_RS12495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12495
NC_004088.1	Protein Homology	CDS	2689012	2689116	.	-	0	ID=cds2421;Parent=gene2492;Dbxref=Genbank:WP_002215419.1;Name=WP_002215419.1;gbkey=CDS;product=transposase;protein_id=WP_002215419.1;transl_table=11
NC_004088.1	RefSeq	gene	2689794	2690228	.	+	.	ID=gene2493;Name=Y_RS12505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12505;old_locus_tag=y2422
NC_004088.1	Protein Homology	CDS	2689794	2690228	.	+	0	ID=cds2422;Parent=gene2493;Dbxref=Genbank:WP_002215417.1;Name=WP_002215417.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215417.1;transl_table=11
NC_004088.1	RefSeq	gene	2690240	2690809	.	+	.	ID=gene2494;Name=Y_RS12510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12510;old_locus_tag=y2423
NC_004088.1	Protein Homology	CDS	2690240	2690809	.	+	0	ID=cds2423;Parent=gene2494;Dbxref=Genbank:WP_002213205.1;Name=WP_002213205.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213205.1;transl_table=11
NC_004088.1	RefSeq	region	2691196	2692496	.	-	.	ID=id307;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2691227	2692425	.	-	.	ID=gene2495;Name=Y_RS12515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS12515;pseudo=true
NC_004088.1	Protein Homology	CDS	2691227	2692425	.	-	0	ID=cds2424;Parent=gene2495;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2692473	2693549	.	-	.	ID=gene2496;Name=Y_RS12520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12520;old_locus_tag=y2426
NC_004088.1	Protein Homology	CDS	2692473	2693549	.	-	0	ID=cds2425;Parent=gene2496;Dbxref=Genbank:WP_002213208.1;Name=WP_002213208.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213208.1;transl_table=11
NC_004088.1	RefSeq	gene	2693615	2693905	.	-	.	ID=gene2497;Name=Y_RS12525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12525;old_locus_tag=y2427
NC_004088.1	Protein Homology	CDS	2693615	2693905	.	-	0	ID=cds2426;Parent=gene2497;Dbxref=Genbank:WP_002213209.1;Name=WP_002213209.1;gbkey=CDS;product=antitoxin;protein_id=WP_002213209.1;transl_table=11
NC_004088.1	RefSeq	gene	2693886	2694158	.	-	.	ID=gene2498;Name=Y_RS12530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12530;old_locus_tag=y2428
NC_004088.1	Protein Homology	CDS	2693886	2694158	.	-	0	ID=cds2427;Parent=gene2498;Dbxref=Genbank:WP_002213210.1;Name=WP_002213210.1;gbkey=CDS;product=toxin;protein_id=WP_002213210.1;transl_table=11
NC_004088.1	RefSeq	gene	2694294	2694548	.	+	.	ID=gene2499;Name=Y_RS12535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12535
NC_004088.1	Protein Homology	CDS	2694294	2694548	.	+	0	ID=cds2428;Parent=gene2499;Dbxref=Genbank:WP_002213211.1;Name=WP_002213211.1;gbkey=CDS;product=phage baseplate protein;protein_id=WP_002213211.1;transl_table=11
NC_004088.1	RefSeq	gene	2694545	2694844	.	+	.	ID=gene2500;Name=Y_RS12540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12540;old_locus_tag=y2431
NC_004088.1	Protein Homology	CDS	2694545	2694844	.	+	0	ID=cds2429;Parent=gene2500;Dbxref=Genbank:WP_002213212.1;Name=WP_002213212.1;gbkey=CDS;product=lysozyme;protein_id=WP_002213212.1;transl_table=11
NC_004088.1	RefSeq	gene	2694861	2695148	.	+	.	ID=gene2501;Name=Y_RS12545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12545;old_locus_tag=y2432
NC_004088.1	Protein Homology	CDS	2694861	2695148	.	+	0	ID=cds2430;Parent=gene2501;Dbxref=Genbank:WP_002215413.1;Name=WP_002215413.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215413.1;transl_table=11
NC_004088.1	RefSeq	gene	2695583	2695798	.	+	.	ID=gene2502;Name=Y_RS12550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12550
NC_004088.1	Protein Homology	CDS	2695583	2695798	.	+	0	ID=cds2431;Parent=gene2502;Dbxref=Genbank:WP_002215412.1;Name=WP_002215412.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215412.1;transl_table=11
NC_004088.1	RefSeq	gene	2695795	2696100	.	+	.	ID=gene2503;Name=Y_RS12555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12555;old_locus_tag=y2433
NC_004088.1	Protein Homology	CDS	2695795	2696100	.	+	0	ID=cds2432;Parent=gene2503;Dbxref=Genbank:WP_002215411.1;Name=WP_002215411.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215411.1;transl_table=11
NC_004088.1	RefSeq	gene	2696081	2696359	.	+	.	ID=gene2504;Name=Y_RS12560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12560
NC_004088.1	Protein Homology	CDS	2696081	2696359	.	+	0	ID=cds2433;Parent=gene2504;Dbxref=Genbank:WP_002215410.1;Name=WP_002215410.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215410.1;transl_table=11
NC_004088.1	RefSeq	gene	2696524	2696664	.	+	.	ID=gene2505;Name=Y_RS12565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12565;old_locus_tag=y2434
NC_004088.1	Protein Homology	CDS	2696524	2696664	.	+	0	ID=cds2434;Parent=gene2505;Dbxref=Genbank:WP_002213214.1;Name=WP_002213214.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213214.1;transl_table=11
NC_004088.1	RefSeq	gene	2696712	2697194	.	+	.	ID=gene2506;Name=Y_RS12570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12570;old_locus_tag=y2435
NC_004088.1	Protein Homology	CDS	2696712	2697194	.	+	0	ID=cds2435;Parent=gene2506;Dbxref=Genbank:WP_032465626.1;Name=WP_032465626.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_032465626.1;transl_table=11
NC_004088.1	RefSeq	gene	2697266	2698225	.	+	.	ID=gene2507;Name=Y_RS12575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12575;old_locus_tag=y2436
NC_004088.1	Protein Homology	CDS	2697266	2698225	.	+	0	ID=cds2436;Parent=gene2507;Dbxref=Genbank:WP_002213218.1;Name=WP_002213218.1;gbkey=CDS;product=transposase;protein_id=WP_002213218.1;transl_table=11
NC_004088.1	RefSeq	gene	2698445	2698789	.	+	.	ID=gene2508;Name=Y_RS12580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12580
NC_004088.1	Protein Homology	CDS	2698445	2698789	.	+	0	ID=cds2437;Parent=gene2508;Dbxref=Genbank:WP_002215406.1;Name=WP_002215406.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215406.1;transl_table=11
NC_004088.1	RefSeq	gene	2698815	2699012	.	+	.	ID=gene2509;Name=Y_RS12585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12585;old_locus_tag=y2437
NC_004088.1	Protein Homology	CDS	2698815	2699012	.	+	0	ID=cds2438;Parent=gene2509;Dbxref=Genbank:WP_002231182.1;Name=WP_002231182.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002231182.1;transl_table=11
NC_004088.1	RefSeq	gene	2699042	2699224	.	-	.	ID=gene2510;Name=Y_RS12590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12590
NC_004088.1	Protein Homology	CDS	2699042	2699224	.	-	0	ID=cds2439;Parent=gene2510;Dbxref=Genbank:WP_002213223.1;Name=WP_002213223.1;gbkey=CDS;product=membrane protein;protein_id=WP_002213223.1;transl_table=11
NC_004088.1	RefSeq	gene	2699834	2699956	.	-	.	ID=gene2511;Name=Y_RS12595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12595
NC_004088.1	Protein Homology	CDS	2699834	2699956	.	-	0	ID=cds2440;Parent=gene2511;Dbxref=Genbank:WP_002213228.1;Name=WP_002213228.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213228.1;transl_table=11
NC_004088.1	RefSeq	gene	2700349	2700576	.	-	.	ID=gene2512;Name=Y_RS12600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12600;old_locus_tag=y2439
NC_004088.1	Protein Homology	CDS	2700349	2700576	.	-	0	ID=cds2441;Parent=gene2512;Dbxref=Genbank:WP_002215401.1;Name=WP_002215401.1;gbkey=CDS;product=replicative DNA helicase;protein_id=WP_002215401.1;transl_table=11
NC_004088.1	RefSeq	gene	2700687	2701202	.	+	.	ID=gene2513;Name=Y_RS12605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12605
NC_004088.1	Protein Homology	CDS	2700687	2701202	.	+	0	ID=cds2442;Parent=gene2513;Dbxref=Genbank:WP_002215399.1;Name=WP_002215399.1;gbkey=CDS;product=integrase;protein_id=WP_002215399.1;transl_table=11
NC_004088.1	RefSeq	gene	2701500	2701585	.	-	.	ID=gene2514;Name=Y_RS12610;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS12610;old_locus_tag=yt049
NC_004088.1	tRNAscan-SE	tRNA	2701500	2701585	.	-	.	ID=rna66;Parent=gene2514;anticodon=(pos:complement(2701549..2701551));gbkey=tRNA;product=tRNA-Leu
NC_004088.1	tRNAscan-SE	exon	2701500	2701585	.	-	.	ID=id308;Parent=rna66;anticodon=(pos:complement(2701549..2701551));gbkey=tRNA;product=tRNA-Leu
NC_004088.1	RefSeq	gene	2701596	2701669	.	-	.	ID=gene2515;Name=Y_RS12615;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS12615;old_locus_tag=yt050
NC_004088.1	tRNAscan-SE	tRNA	2701596	2701669	.	-	.	ID=rna67;Parent=gene2515;anticodon=(pos:complement(2701635..2701637));gbkey=tRNA;product=tRNA-Cys
NC_004088.1	tRNAscan-SE	exon	2701596	2701669	.	-	.	ID=id309;Parent=rna67;anticodon=(pos:complement(2701635..2701637));gbkey=tRNA;product=tRNA-Cys
NC_004088.1	RefSeq	gene	2701722	2701797	.	-	.	ID=gene2516;Name=Y_RS12620;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS12620;old_locus_tag=yt051
NC_004088.1	tRNAscan-SE	tRNA	2701722	2701797	.	-	.	ID=rna68;Parent=gene2516;anticodon=(pos:complement(2701762..2701764));gbkey=tRNA;product=tRNA-Gly
NC_004088.1	tRNAscan-SE	exon	2701722	2701797	.	-	.	ID=id310;Parent=rna68;anticodon=(pos:complement(2701762..2701764));gbkey=tRNA;product=tRNA-Gly
NC_004088.1	RefSeq	gene	2701942	2702490	.	-	.	ID=gene2517;Name=Y_RS12625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12625;old_locus_tag=y2441
NC_004088.1	Protein Homology	CDS	2701942	2702490	.	-	0	ID=cds2443;Parent=gene2517;Dbxref=Genbank:WP_002220475.1;Name=WP_002220475.1;gbkey=CDS;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_002220475.1;transl_table=11
NC_004088.1	RefSeq	gene	2702549	2704381	.	-	.	ID=gene2518;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=Y_RS12630;old_locus_tag=y2442
NC_004088.1	Protein Homology	CDS	2702549	2704381	.	-	0	ID=cds2444;Parent=gene2518;Dbxref=Genbank:WP_002220477.1;Name=WP_002220477.1;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision;gbkey=CDS;gene=uvrC;product=UvrABC system protein C;protein_id=WP_002220477.1;transl_table=11
NC_004088.1	RefSeq	gene	2704374	2705030	.	-	.	ID=gene2519;Name=sirA;gbkey=Gene;gene=sirA;gene_biotype=protein_coding;gene_synonym=uvrY;locus_tag=Y_RS12635;old_locus_tag=y2443
NC_004088.1	Protein Homology	CDS	2704374	2705030	.	-	0	ID=cds2445;Parent=gene2519;Dbxref=Genbank:WP_002211176.1;Name=WP_002211176.1;Note=in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system%3B in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system;gbkey=CDS;gene=sirA;product=transcriptional regulator;protein_id=WP_002211176.1;transl_table=11
NC_004088.1	RefSeq	gene	2705693	2705917	.	+	.	ID=gene2520;Name=Y_RS12640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12640
NC_004088.1	Protein Homology	CDS	2705693	2705917	.	+	0	ID=cds2446;Parent=gene2520;Dbxref=Genbank:WP_002211175.1;Name=WP_002211175.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211175.1;transl_table=11
NC_004088.1	RefSeq	gene	2706045	2706386	.	+	.	ID=gene2521;Name=Y_RS12645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12645;old_locus_tag=y2444
NC_004088.1	Protein Homology	CDS	2706045	2706386	.	+	0	ID=cds2447;Parent=gene2521;Dbxref=Genbank:WP_002218408.1;Name=WP_002218408.1;gbkey=CDS;product=membrane protein;protein_id=WP_002218408.1;transl_table=11
NC_004088.1	RefSeq	gene	2706414	2706668	.	-	.	ID=gene2522;Name=Y_RS12650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12650;old_locus_tag=y2445
NC_004088.1	Protein Homology	CDS	2706414	2706668	.	-	0	ID=cds2448;Parent=gene2522;Dbxref=Genbank:WP_002211173.1;Name=WP_002211173.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211173.1;transl_table=11
NC_004088.1	RefSeq	gene	2707008	2707559	.	-	.	ID=gene2523;Name=Y_RS12655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12655;old_locus_tag=y2446
NC_004088.1	Protein Homology	CDS	2707008	2707559	.	-	0	ID=cds2449;Parent=gene2523;Dbxref=Genbank:WP_002211172.1;Name=WP_002211172.1;gbkey=CDS;product=attachment invasion locus protein;protein_id=WP_002211172.1;transl_table=11
NC_004088.1	RefSeq	gene	2708246	2708321	.	-	.	ID=gene2524;Name=Y_RS12660;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS12660;old_locus_tag=yt052
NC_004088.1	tRNAscan-SE	tRNA	2708246	2708321	.	-	.	ID=rna69;Parent=gene2524;anticodon=(pos:complement(2708286..2708288));gbkey=tRNA;product=tRNA-Lys
NC_004088.1	tRNAscan-SE	exon	2708246	2708321	.	-	.	ID=id311;Parent=rna69;anticodon=(pos:complement(2708286..2708288));gbkey=tRNA;product=tRNA-Lys
NC_004088.1	RefSeq	gene	2708674	2710098	.	+	.	ID=gene2525;Name=Y_RS12665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12665;old_locus_tag=y2447
NC_004088.1	Protein Homology	CDS	2708674	2710098	.	+	0	ID=cds2450;Parent=gene2525;Dbxref=Genbank:WP_002220481.1;Name=WP_002220481.1;gbkey=CDS;product=alanine glycine permease;protein_id=WP_002220481.1;transl_table=11
NC_004088.1	RefSeq	gene	2710224	2711402	.	-	.	ID=gene2526;Name=Y_RS12670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12670;old_locus_tag=y2448
NC_004088.1	Protein Homology	CDS	2710224	2711402	.	-	0	ID=cds2451;Parent=gene2526;Dbxref=Genbank:WP_002211169.1;Name=WP_002211169.1;gbkey=CDS;product=N-acetylneuraminate epimerase;protein_id=WP_002211169.1;transl_table=11
NC_004088.1	RefSeq	gene	2711796	2712395	.	+	.	ID=gene2527;Name=Y_RS12675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12675;old_locus_tag=y2449
NC_004088.1	Protein Homology	CDS	2711796	2712395	.	+	0	ID=cds2452;Parent=gene2527;Dbxref=Genbank:WP_002211168.1;Name=WP_002211168.1;Note=catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=NAD(P)H dehydrogenase (quinone);protein_id=WP_002211168.1;transl_table=11
NC_004088.1	RefSeq	gene	2712481	2713785	.	-	.	ID=gene2528;Name=Y_RS12680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12680;old_locus_tag=y2450
NC_004088.1	Protein Homology	CDS	2712481	2713785	.	-	0	ID=cds2453;Parent=gene2528;Dbxref=Genbank:WP_002211167.1;Name=WP_002211167.1;gbkey=CDS;product=deferrochelatase/peroxidase EfeB;protein_id=WP_002211167.1;transl_table=11
NC_004088.1	RefSeq	gene	2713796	2714926	.	-	.	ID=gene2529;Name=Y_RS12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12685;old_locus_tag=y2451
NC_004088.1	Protein Homology	CDS	2713796	2714926	.	-	0	ID=cds2454;Parent=gene2529;Dbxref=Genbank:WP_002211166.1;Name=WP_002211166.1;Note=with EfeUB forms an iron transport system which is silent in E. coli K-12 due to a mutation in EfeU;gbkey=CDS;product=iron uptake system component EfeO;protein_id=WP_002211166.1;transl_table=11
NC_004088.1	RefSeq	gene	2714956	2715804	.	-	.	ID=gene2530;Name=Y_RS12690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12690;old_locus_tag=y2452
NC_004088.1	Protein Homology	CDS	2714956	2715804	.	-	0	ID=cds2455;Parent=gene2530;Dbxref=Genbank:WP_002211165.1;Name=WP_002211165.1;gbkey=CDS;product=ferrous iron permease EfeU;protein_id=WP_002211165.1;transl_table=11
NC_004088.1	RefSeq	gene	2716137	2717621	.	-	.	ID=gene2531;Name=Y_RS12695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12695;old_locus_tag=y2453
NC_004088.1	Protein Homology	CDS	2716137	2717621	.	-	0	ID=cds2456;Parent=gene2531;Dbxref=Genbank:WP_002211164.1;Name=WP_002211164.1;Note=involved in the sodium dependent uptake of proline;gbkey=CDS;product=proline:sodium symporter;protein_id=WP_002211164.1;transl_table=11
NC_004088.1	RefSeq	gene	2717651	2717848	.	-	.	ID=gene2532;Name=Y_RS12700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12700;old_locus_tag=y2454
NC_004088.1	Protein Homology	CDS	2717651	2717848	.	-	0	ID=cds2457;Parent=gene2532;Dbxref=Genbank:WP_002211163.1;Name=WP_002211163.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211163.1;transl_table=11
NC_004088.1	RefSeq	gene	2718193	2722164	.	+	.	ID=gene2533;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=Y_RS12705;old_locus_tag=y2455
NC_004088.1	Protein Homology	CDS	2718193	2722164	.	+	0	ID=cds2458;Parent=gene2533;Dbxref=Genbank:WP_002224448.1;Name=WP_002224448.1;Note=proline utilization protein A%3B multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate%3B in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus%3B forms dimers and is a peripherally membrane-associated protein;gbkey=CDS;gene=putA;product=bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase;protein_id=WP_002224448.1;transl_table=11
NC_004088.1	RefSeq	gene	2722670	2722963	.	+	.	ID=gene2534;Name=Y_RS12710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12710;old_locus_tag=y2456
NC_004088.1	Protein Homology	CDS	2722670	2722963	.	+	0	ID=cds2459;Parent=gene2534;Dbxref=Genbank:WP_002211161.1;Name=WP_002211161.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211161.1;transl_table=11
NC_004088.1	RefSeq	gene	2722963	2723334	.	+	.	ID=gene2535;Name=Y_RS12715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12715;old_locus_tag=y2457
NC_004088.1	Protein Homology	CDS	2722963	2723334	.	+	0	ID=cds2460;Parent=gene2535;Dbxref=Genbank:WP_002223875.1;Name=WP_002223875.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002223875.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2723470	2723638	.	+	.	ID=id312;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2723626	2724387	.	-	.	ID=gene2536;Name=Y_RS12720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12720;old_locus_tag=y2458
NC_004088.1	Protein Homology	CDS	2723626	2724387	.	-	0	ID=cds2461;Parent=gene2536;Dbxref=Genbank:WP_002211159.1;Name=WP_002211159.1;gbkey=CDS;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_002211159.1;transl_table=11
NC_004088.1	RefSeq	gene	2724390	2725052	.	-	.	ID=gene2537;Name=Y_RS12725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12725;old_locus_tag=y2459
NC_004088.1	Protein Homology	CDS	2724390	2725052	.	-	0	ID=cds2462;Parent=gene2537;Dbxref=Genbank:WP_002211158.1;Name=WP_002211158.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_002211158.1;transl_table=11
NC_004088.1	RefSeq	gene	2725052	2725852	.	-	.	ID=gene2538;Name=Y_RS12730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12730;old_locus_tag=y2460
NC_004088.1	Protein Homology	CDS	2725052	2725852	.	-	0	ID=cds2463;Parent=gene2538;Dbxref=Genbank:WP_002211157.1;Name=WP_002211157.1;gbkey=CDS;product=cystine transporter subunit;protein_id=WP_002211157.1;transl_table=11
NC_004088.1	RefSeq	gene	2725976	2726968	.	-	.	ID=gene2539;Name=Y_RS12735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12735;old_locus_tag=y2462
NC_004088.1	Protein Homology	CDS	2725976	2726968	.	-	0	ID=cds2464;Parent=gene2539;Dbxref=Genbank:WP_002227959.1;Name=WP_002227959.1;gbkey=CDS;product=D-cysteine desulfhydrase;protein_id=WP_002227959.1;transl_table=11
NC_004088.1	RefSeq	gene	2727257	2727766	.	-	.	ID=gene2540;Name=Y_RS12740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12740;old_locus_tag=y2463
NC_004088.1	Protein Homology	CDS	2727257	2727766	.	-	0	ID=cds2465;Parent=gene2540;Dbxref=Genbank:WP_002211154.1;Name=WP_002211154.1;gbkey=CDS;product=flagellar biosynthesis protein FliZ;protein_id=WP_002211154.1;transl_table=11
NC_004088.1	RefSeq	gene	2727988	2728710	.	-	.	ID=gene2541;Name=fliA;gbkey=Gene;gene=fliA;gene_biotype=protein_coding;locus_tag=Y_RS12745;old_locus_tag=y2464
NC_004088.1	Protein Homology	CDS	2727988	2728710	.	-	0	ID=cds2466;Parent=gene2541;Dbxref=Genbank:WP_002211153.1;Name=WP_002211153.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes;gbkey=CDS;gene=fliA;product=flagellar biosynthesis sigma factor;protein_id=WP_002211153.1;transl_table=11
NC_004088.1	RefSeq	gene	2729057	2730166	.	-	.	ID=gene2542;Name=Y_RS12750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12750;old_locus_tag=y2465
NC_004088.1	Protein Homology	CDS	2729057	2730166	.	-	0	ID=cds2467;Parent=gene2542;Dbxref=Genbank:WP_002211152.1;Name=WP_002211152.1;Note=structural flagella protein;gbkey=CDS;product=flagellin;protein_id=WP_002211152.1;transl_table=11
NC_004088.1	RefSeq	gene	2730463	2731863	.	+	.	ID=gene2543;Name=Y_RS12755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12755;old_locus_tag=y2466
NC_004088.1	Protein Homology	CDS	2730463	2731863	.	+	0	ID=cds2468;Parent=gene2543;Dbxref=Genbank:WP_002211150.1;Name=WP_002211150.1;gbkey=CDS;product=flagellar cap protein FliD;protein_id=WP_002211150.1;transl_table=11
NC_004088.1	RefSeq	gene	2731874	2732272	.	+	.	ID=gene2544;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=Y_RS12760;old_locus_tag=y2467
NC_004088.1	Protein Homology	CDS	2731874	2732272	.	+	0	ID=cds2469;Parent=gene2544;Dbxref=Genbank:WP_002211149.1;Name=WP_002211149.1;Note=flagellin specific chaperone;gbkey=CDS;gene=fliS;product=flagellar export chaperone FliS;protein_id=WP_002211149.1;transl_table=11
NC_004088.1	RefSeq	gene	2732283	2732645	.	+	.	ID=gene2545;Name=Y_RS12765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12765;old_locus_tag=y2468
NC_004088.1	Protein Homology	CDS	2732283	2732645	.	+	0	ID=cds2470;Parent=gene2545;Dbxref=Genbank:WP_002211148.1;Name=WP_002211148.1;gbkey=CDS;product=flagellar protein FliT;protein_id=WP_002211148.1;transl_table=11
NC_004088.1	RefSeq	gene	2732700	2732939	.	+	.	ID=gene2546;Name=Y_RS12770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12770
NC_004088.1	Protein Homology	CDS	2732700	2732939	.	+	0	ID=cds2471;Parent=gene2546;Dbxref=Genbank:WP_002215994.1;Name=WP_002215994.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215994.1;transl_table=11
NC_004088.1	RefSeq	gene	2732946	2733821	.	+	.	ID=gene2547;Name=Y_RS12775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12775;old_locus_tag=y2469
NC_004088.1	Protein Homology	CDS	2732946	2733821	.	+	0	ID=cds2472;Parent=gene2547;Dbxref=Genbank:WP_002211147.1;Name=WP_002211147.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002211147.1;transl_table=11
NC_004088.1	RefSeq	gene	2734175	2736088	.	+	.	ID=gene2548;Name=Y_RS12780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12780;old_locus_tag=y2471
NC_004088.1	Protein Homology	CDS	2734175	2736088	.	+	0	ID=cds2473;Parent=gene2548;Dbxref=Genbank:WP_002228541.1;Name=WP_002228541.1;gbkey=CDS;product=histidine kinase;protein_id=WP_002228541.1;transl_table=11
NC_004088.1	RefSeq	gene	2736225	2737130	.	+	.	ID=gene2549;Name=Y_RS12785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12785;old_locus_tag=y2472
NC_004088.1	Protein Homology	CDS	2736225	2737130	.	+	0	ID=cds2474;Parent=gene2549;Dbxref=Genbank:WP_002228542.1;Name=WP_002228542.1;gbkey=CDS;product=chemotaxis protein;protein_id=WP_002228542.1;transl_table=11
NC_004088.1	RefSeq	gene	2737291	2737902	.	+	.	ID=gene2550;Name=Y_RS12790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12790;old_locus_tag=y2473
NC_004088.1	Protein Homology	CDS	2737291	2737902	.	+	0	ID=cds2475;Parent=gene2550;Dbxref=Genbank:WP_002211145.1;Name=WP_002211145.1;gbkey=CDS;product=DNA-3-methyladenine glycosidase;protein_id=WP_002211145.1;transl_table=11
NC_004088.1	RefSeq	gene	2738088	2738564	.	-	.	ID=gene2551;Name=Y_RS12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12795;old_locus_tag=y2474
NC_004088.1	Protein Homology	CDS	2738088	2738564	.	-	0	ID=cds2476;Parent=gene2551;Dbxref=Genbank:WP_002215992.1;Name=WP_002215992.1;gbkey=CDS;product=death-on-curing family protein;protein_id=WP_002215992.1;transl_table=11
NC_004088.1	RefSeq	gene	2738575	2738754	.	-	.	ID=gene2552;Name=Y_RS12800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12800
NC_004088.1	Protein Homology	CDS	2738575	2738754	.	-	0	ID=cds2477;Parent=gene2552;Dbxref=Genbank:WP_002215991.1;Name=WP_002215991.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215991.1;transl_table=11
NC_004088.1	RefSeq	gene	2739174	2739485	.	-	.	ID=gene2553;Name=Y_RS12805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12805;old_locus_tag=y2475
NC_004088.1	Protein Homology	CDS	2739174	2739485	.	-	0	ID=cds2478;Parent=gene2553;Dbxref=Genbank:WP_002211144.1;Name=WP_002211144.1;gbkey=CDS;product=flagellar hook-basal body complex protein FliE;protein_id=WP_002211144.1;transl_table=11
NC_004088.1	RefSeq	gene	2739838	2741550	.	+	.	ID=gene2554;Name=Y_RS12810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12810;old_locus_tag=y2476
NC_004088.1	Protein Homology	CDS	2739838	2741550	.	+	0	ID=cds2479;Parent=gene2554;Dbxref=Genbank:WP_002211143.1;Name=WP_002211143.1;gbkey=CDS;product=flagellar M-ring protein FliF;protein_id=WP_002211143.1;transl_table=11
NC_004088.1	RefSeq	gene	2741547	2742539	.	+	.	ID=gene2555;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=Y_RS12815;old_locus_tag=y2477
NC_004088.1	Protein Homology	CDS	2741547	2742539	.	+	0	ID=cds2480;Parent=gene2555;Dbxref=Genbank:WP_002211142.1;Name=WP_002211142.1;Note=One of three proteins involved in switching the direction of the flagellar rotation;gbkey=CDS;gene=fliG;product=flagellar motor switch protein FliG;protein_id=WP_002211142.1;transl_table=11
NC_004088.1	RefSeq	gene	2742532	2743248	.	+	.	ID=gene2556;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=Y_RS12820;old_locus_tag=y2478
NC_004088.1	Protein Homology	CDS	2742532	2743248	.	+	0	ID=cds2481;Parent=gene2556;Dbxref=Genbank:WP_002211141.1;Name=WP_002211141.1;Note=binds to and inhibits the function of flagella specific ATPase FliI;gbkey=CDS;gene=fliH;product=flagellar assembly protein H;protein_id=WP_002211141.1;transl_table=11
NC_004088.1	RefSeq	gene	2743211	2744665	.	+	.	ID=gene2557;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=Y_RS12825;old_locus_tag=y2479
NC_004088.1	Protein Homology	CDS	2743211	2744665	.	+	0	ID=cds2482;Parent=gene2557;Dbxref=Genbank:WP_002211140.1;Name=WP_002211140.1;Note=involved in type III protein export during flagellum assembly;gbkey=CDS;gene=fliI;product=flagellum-specific ATP synthase;protein_id=WP_002211140.1;transl_table=11
NC_004088.1	RefSeq	gene	2744765	2745211	.	+	.	ID=gene2558;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=Y_RS12830;old_locus_tag=y2480
NC_004088.1	Protein Homology	CDS	2744765	2745211	.	+	0	ID=cds2483;Parent=gene2558;Dbxref=Genbank:WP_002211139.1;Name=WP_002211139.1;Note=rod/hook and filament chaperone;gbkey=CDS;gene=fliJ;product=flagellar biosynthesis chaperone;protein_id=WP_002211139.1;transl_table=11
NC_004088.1	RefSeq	gene	2745208	2746560	.	+	.	ID=gene2559;Name=Y_RS12835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12835;old_locus_tag=y2481
NC_004088.1	Protein Homology	CDS	2745208	2746560	.	+	0	ID=cds2484;Parent=gene2559;Dbxref=Genbank:WP_002211138.1;Name=WP_002211138.1;gbkey=CDS;product=flagellar hook-length control protein FliK;protein_id=WP_002211138.1;transl_table=11
NC_004088.1	RefSeq	gene	2746827	2747297	.	+	.	ID=gene2560;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=Y_RS12840;old_locus_tag=y2482
NC_004088.1	Protein Homology	CDS	2746827	2747297	.	+	0	ID=cds2485;Parent=gene2560;Dbxref=Genbank:WP_002227961.1;Name=WP_002227961.1;Note=interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring;gbkey=CDS;gene=fliL;product=flagellar basal body protein FliL;protein_id=WP_002227961.1;transl_table=11
NC_004088.1	RefSeq	gene	2747303	2748304	.	+	.	ID=gene2561;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=Y_RS12845;old_locus_tag=y2483
NC_004088.1	Protein Homology	CDS	2747303	2748304	.	+	0	ID=cds2486;Parent=gene2561;Dbxref=Genbank:WP_002211135.1;Name=WP_002211135.1;Note=with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation;gbkey=CDS;gene=fliM;product=flagellar motor switch protein FliM;protein_id=WP_002211135.1;transl_table=11
NC_004088.1	RefSeq	gene	2748301	2748717	.	+	.	ID=gene2562;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=Y_RS12850;old_locus_tag=y2484
NC_004088.1	Protein Homology	CDS	2748301	2748717	.	+	0	ID=cds2487;Parent=gene2562;Dbxref=Genbank:WP_002211134.1;Name=WP_002211134.1;Note=One of three proteins involved in switching the direction of the flagellar rotation;gbkey=CDS;gene=fliN;product=flagellar motor switch protein FliN;protein_id=WP_002211134.1;transl_table=11
NC_004088.1	RefSeq	gene	2748717	2749253	.	+	.	ID=gene2563;Name=Y_RS12855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12855;old_locus_tag=y2485
NC_004088.1	Protein Homology	CDS	2748717	2749253	.	+	0	ID=cds2488;Parent=gene2563;Dbxref=Genbank:WP_002211133.1;Name=WP_002211133.1;gbkey=CDS;product=flagellar biosynthesis protein;protein_id=WP_002211133.1;transl_table=11
NC_004088.1	RefSeq	gene	2749334	2750074	.	+	.	ID=gene2564;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=Y_RS12860;old_locus_tag=y2486
NC_004088.1	Protein Homology	CDS	2749334	2750074	.	+	0	ID=cds2489;Parent=gene2564;Dbxref=Genbank:WP_002220494.1;Name=WP_002220494.1;Note=FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliP;product=flagellar biosynthesis protein FliP;protein_id=WP_002220494.1;transl_table=11
NC_004088.1	RefSeq	gene	2750180	2750449	.	+	.	ID=gene2565;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=Y_RS12865;old_locus_tag=y2487
NC_004088.1	Protein Homology	CDS	2750180	2750449	.	+	0	ID=cds2490;Parent=gene2565;Dbxref=Genbank:WP_002211131.1;Name=WP_002211131.1;Note=with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliQ;product=flagellar biosynthesis protein FliQ;protein_id=WP_002211131.1;transl_table=11
NC_004088.1	RefSeq	gene	2750452	2751234	.	+	.	ID=gene2566;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=Y_RS12870;old_locus_tag=y2488
NC_004088.1	Protein Homology	CDS	2750452	2751234	.	+	0	ID=cds2491;Parent=gene2566;Dbxref=Genbank:WP_002211130.1;Name=WP_002211130.1;Note=FliR%2C with proteins FliP and FliQ%2C forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliR;product=flagellar biosynthesis protein FliR;protein_id=WP_002211130.1;transl_table=11
NC_004088.1	RefSeq	gene	2751441	2751623	.	+	.	ID=gene2567;Name=Y_RS12875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12875
NC_004088.1	Protein Homology	CDS	2751441	2751623	.	+	0	ID=cds2492;Parent=gene2567;Dbxref=Genbank:WP_002214976.1;Name=WP_002214976.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214976.1;transl_table=11
NC_004088.1	RefSeq	gene	2751668	2752087	.	+	.	ID=gene2568;Name=Y_RS12880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12880;old_locus_tag=y2490
NC_004088.1	Protein Homology	CDS	2751668	2752087	.	+	0	ID=cds2493;Parent=gene2568;Dbxref=Genbank:WP_002211129.1;Name=WP_002211129.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211129.1;transl_table=11
NC_004088.1	RefSeq	gene	2752345	2753304	.	-	.	ID=gene2569;Name=Y_RS12885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12885;old_locus_tag=y2491
NC_004088.1	Protein Homology	CDS	2752345	2753304	.	-	0	ID=cds2494;Parent=gene2569;Dbxref=Genbank:WP_002223882.1;Name=WP_002223882.1;gbkey=CDS;product=kinase pfkB family;protein_id=WP_002223882.1;transl_table=11
NC_004088.1	RefSeq	gene	2753353	2754375	.	-	.	ID=gene2570;Name=Y_RS12890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12890;old_locus_tag=y2492
NC_004088.1	Protein Homology	CDS	2753353	2754375	.	-	0	ID=cds2495;Parent=gene2570;Dbxref=Genbank:WP_002214974.1;Name=WP_002214974.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002214974.1;transl_table=11
NC_004088.1	RefSeq	gene	2754378	2755955	.	-	.	ID=gene2571;Name=Y_RS12895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12895;old_locus_tag=y2493
NC_004088.1	Protein Homology	CDS	2754378	2755955	.	-	0	ID=cds2496;Parent=gene2571;Dbxref=Genbank:WP_002211126.1;Name=WP_002211126.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002211126.1;transl_table=11
NC_004088.1	RefSeq	gene	2756021	2757016	.	-	.	ID=gene2572;Name=Y_RS12900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12900;old_locus_tag=y2494
NC_004088.1	Protein Homology	CDS	2756021	2757016	.	-	0	ID=cds2497;Parent=gene2572;Dbxref=Genbank:WP_002211125.1;Name=WP_002211125.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002211125.1;transl_table=11
NC_004088.1	RefSeq	gene	2757059	2758138	.	-	.	ID=gene2573;Name=Y_RS12905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12905;old_locus_tag=y2495
NC_004088.1	Protein Homology	CDS	2757059	2758138	.	-	0	ID=cds2498;Parent=gene2573;Dbxref=Genbank:WP_002211124.1;Name=WP_002211124.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002211124.1;transl_table=11
NC_004088.1	RefSeq	gene	2758268	2760334	.	-	.	ID=gene2574;Name=Y_RS12910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12910;old_locus_tag=y2497
NC_004088.1	Protein Homology	CDS	2758268	2760334	.	-	0	ID=cds2499;Parent=gene2574;Dbxref=Genbank:WP_002211122.1;Name=WP_002211122.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_002211122.1;transl_table=11
NC_004088.1	RefSeq	gene	2760552	2761553	.	+	.	ID=gene2575;Name=Y_RS12915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12915;old_locus_tag=y2498
NC_004088.1	Protein Homology	CDS	2760552	2761553	.	+	0	ID=cds2500;Parent=gene2575;Dbxref=Genbank:WP_002211121.1;Name=WP_002211121.1;gbkey=CDS;product=DNA-binding transcriptional regulator;protein_id=WP_002211121.1;transl_table=11
NC_004088.1	RefSeq	gene	2761582	2762562	.	-	.	ID=gene2576;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=Y_RS12920;old_locus_tag=y2499
NC_004088.1	Protein Homology	CDS	2761582	2762562	.	-	0	ID=cds2501;Parent=gene2576;Dbxref=Genbank:WP_002211120.1;Name=WP_002211120.1;Note=with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes;gbkey=CDS;gene=flgL;product=flagellar hook-associated protein FlgL;protein_id=WP_002211120.1;transl_table=11
NC_004088.1	RefSeq	gene	2762701	2764365	.	-	.	ID=gene2577;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=Y_RS12925;old_locus_tag=y2501
NC_004088.1	Protein Homology	CDS	2762701	2764365	.	-	0	ID=cds2502;Parent=gene2577;Dbxref=Genbank:WP_002211119.1;Name=WP_002211119.1;Note=with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook;gbkey=CDS;gene=flgK;product=flagellar hook protein FlgK;protein_id=WP_002211119.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2764533	2765084	.	+	.	ID=id313;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2765093	2766037	.	-	.	ID=gene2578;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=Y_RS12930;old_locus_tag=y2502
NC_004088.1	Protein Homology	CDS	2765093	2766037	.	-	0	ID=cds2503;Parent=gene2578;Dbxref=Genbank:WP_002211118.1;Name=WP_002211118.1;Note=Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space;gbkey=CDS;gene=flgJ;product=flagellar rod assembly protein FlgJ;protein_id=WP_002211118.1;transl_table=11
NC_004088.1	RefSeq	gene	2766037	2767146	.	-	.	ID=gene2579;Name=flgI;gbkey=Gene;gene=flgI;gene_biotype=protein_coding;locus_tag=Y_RS12935;old_locus_tag=y2503
NC_004088.1	Protein Homology	CDS	2766037	2767146	.	-	0	ID=cds2504;Parent=gene2579;Dbxref=Genbank:WP_002211117.1;Name=WP_002211117.1;Note=part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum;gbkey=CDS;gene=flgI;product=flagellar basal body P-ring protein;protein_id=WP_002211117.1;transl_table=11
NC_004088.1	RefSeq	gene	2767161	2767892	.	-	.	ID=gene2580;Name=Y_RS12940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12940;old_locus_tag=y2504
NC_004088.1	Protein Homology	CDS	2767161	2767892	.	-	0	ID=cds2505;Parent=gene2580;Dbxref=Genbank:WP_002220498.1;Name=WP_002220498.1;gbkey=CDS;product=flagellar basal body L-ring protein;protein_id=WP_002220498.1;transl_table=11
NC_004088.1	RefSeq	gene	2767994	2768719	.	-	.	ID=gene2581;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=pseudogene;locus_tag=Y_RS12945;old_locus_tag=y2505;pseudo=true
NC_004088.1	Protein Homology	CDS	2767994	2768719	.	-	0	ID=cds2506;Parent=gene2581;Note=makes up the distal portion of the flagellar basal body rod;gbkey=CDS;gene=flgG;product=flagellar biosynthesis protein FlgG;pseudo=true;transl_except=(pos:complement(2768705..2768707)%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	2768673	2769302	.	-	.	ID=gene2582;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=protein_coding;locus_tag=Y_RS12950;old_locus_tag=y2506
NC_004088.1	Protein Homology	CDS	2768673	2769302	.	-	0	ID=cds2507;Parent=gene2582;Dbxref=Genbank:WP_002211114.1;Name=WP_002211114.1;Note=FlgF%2C with FlgB and C%2C makes up the proximal portion of the flagellar basal body rod;gbkey=CDS;gene=flgF;product=flagellar basal body rod protein FlgF;protein_id=WP_002211114.1;transl_table=11
NC_004088.1	RefSeq	gene	2769324	2770610	.	-	.	ID=gene2583;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=Y_RS12955;old_locus_tag=y2507
NC_004088.1	Protein Homology	CDS	2769324	2770610	.	-	0	ID=cds2508;Parent=gene2583;Dbxref=Genbank:WP_002211113.1;Name=WP_002211113.1;Note=the hook connects flagellar basal body to the flagellar filament;gbkey=CDS;gene=flgE;product=flagellar hook protein FlgE;protein_id=WP_002211113.1;transl_table=11
NC_004088.1	RefSeq	gene	2770812	2771489	.	-	.	ID=gene2584;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=Y_RS12960;old_locus_tag=y2508
NC_004088.1	Protein Homology	CDS	2770812	2771489	.	-	0	ID=cds2509;Parent=gene2584;Dbxref=Genbank:WP_002211112.1;Name=WP_002211112.1;Note=acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production;gbkey=CDS;gene=flgD;product=flagellar basal body rod modification protein;protein_id=WP_002211112.1;transl_table=11
NC_004088.1	RefSeq	gene	2771504	2771908	.	-	.	ID=gene2585;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=Y_RS12965;old_locus_tag=y2509
NC_004088.1	Protein Homology	CDS	2771504	2771908	.	-	0	ID=cds2510;Parent=gene2585;Dbxref=Genbank:WP_002211111.1;Name=WP_002211111.1;Note=with FlgF and B makes up the proximal portion of the flagellar basal body rod;gbkey=CDS;gene=flgC;product=flagellar basal body rod protein FlgC;protein_id=WP_002211111.1;transl_table=11
NC_004088.1	RefSeq	gene	2771914	2772327	.	-	.	ID=gene2586;Name=Y_RS12970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12970;old_locus_tag=y2510
NC_004088.1	Protein Homology	CDS	2771914	2772327	.	-	0	ID=cds2511;Parent=gene2586;Dbxref=Genbank:WP_002211110.1;Name=WP_002211110.1;gbkey=CDS;product=flagellar biosynthesis protein FlgB;protein_id=WP_002211110.1;transl_table=11
NC_004088.1	RefSeq	gene	2772566	2773264	.	+	.	ID=gene2587;Name=Y_RS12975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12975;old_locus_tag=y2511
NC_004088.1	Protein Homology	CDS	2772566	2773264	.	+	0	ID=cds2512;Parent=gene2587;Dbxref=Genbank:WP_002227966.1;Name=WP_002227966.1;gbkey=CDS;product=flagellar basal body P-ring biosynthesis protein FlgA;protein_id=WP_002227966.1;transl_table=11
NC_004088.1	RefSeq	gene	2773415	2773717	.	+	.	ID=gene2588;Name=Y_RS12980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12980;old_locus_tag=y2513
NC_004088.1	Protein Homology	CDS	2773415	2773717	.	+	0	ID=cds2513;Parent=gene2588;Dbxref=Genbank:WP_002211108.1;Name=WP_002211108.1;Note=regulates the flagellar specific sigma28 transcription factor;gbkey=CDS;product=flagellar biosynthesis protein FlgM;protein_id=WP_002211108.1;transl_table=11
NC_004088.1	RefSeq	gene	2773736	2774176	.	+	.	ID=gene2589;Name=Y_RS12985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12985;old_locus_tag=y2514
NC_004088.1	Protein Homology	CDS	2773736	2774176	.	+	0	ID=cds2514;Parent=gene2589;Dbxref=Genbank:WP_002211107.1;Name=WP_002211107.1;Note=export chaperone for FlgK and FlgL;gbkey=CDS;product=flagellar synthesis protein FlgN;protein_id=WP_002211107.1;transl_table=11
NC_004088.1	RefSeq	gene	2774366	2776438	.	-	.	ID=gene2590;Name=Y_RS12990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12990
NC_004088.1	Protein Homology	CDS	2774366	2776438	.	-	0	ID=cds2515;Parent=gene2590;Dbxref=Genbank:WP_002211106.1;Name=WP_002211106.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211106.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2776415	2777136	.	+	.	ID=id314;gbkey=repeat_region
NC_004088.1	RefSeq	region	2776422	2777131	.	-	.	ID=id315;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2776528	2776986	.	-	.	ID=gene2591;Name=Y_RS12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS12995
NC_004088.1	Protein Homology	CDS	2776528	2776986	.	-	0	ID=cds2516;Parent=gene2591;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	2776976	2777980	.	-	.	ID=gene2592;Name=Y_RS13000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13000
NC_004088.1	Protein Homology	CDS	2776976	2777980	.	-	0	ID=cds2517;Parent=gene2592;Dbxref=Genbank:WP_011566188.1;Name=WP_011566188.1;gbkey=CDS;product=invasin;protein_id=WP_011566188.1;transl_table=11
NC_004088.1	RefSeq	gene	2778644	2779066	.	-	.	ID=gene2593;Name=Y_RS13005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13005;old_locus_tag=y2517
NC_004088.1	Protein Homology	CDS	2778644	2779066	.	-	0	ID=cds2518;Parent=gene2593;Dbxref=Genbank:WP_002211101.1;Name=WP_002211101.1;gbkey=CDS;product=flagellar biosynthesis protein FlhE;protein_id=WP_002211101.1;transl_table=11
NC_004088.1	RefSeq	gene	2779066	2781144	.	-	.	ID=gene2594;Name=Y_RS13010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13010;old_locus_tag=y2518
NC_004088.1	Protein Homology	CDS	2779066	2781144	.	-	0	ID=cds2519;Parent=gene2594;Dbxref=Genbank:WP_002211100.1;Name=WP_002211100.1;gbkey=CDS;product=flagellar biosynthesis protein FlhA;protein_id=WP_002211100.1;transl_table=11
NC_004088.1	RefSeq	gene	2781144	2782304	.	-	.	ID=gene2595;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=Y_RS13015;old_locus_tag=y2519
NC_004088.1	Protein Homology	CDS	2781144	2782304	.	-	0	ID=cds2520;Parent=gene2595;Dbxref=Genbank:WP_002211099.1;Name=WP_002211099.1;Note=membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export;gbkey=CDS;gene=flhB;product=flagellar biosynthesis protein FlhB;protein_id=WP_002211099.1;transl_table=11
NC_004088.1	RefSeq	gene	2782836	2783294	.	+	.	ID=gene2596;Name=Y_RS13020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13020;old_locus_tag=y2520
NC_004088.1	Protein Homology	CDS	2782836	2783294	.	+	0	ID=cds2521;Parent=gene2596;Dbxref=Genbank:WP_002211098.1;Name=WP_002211098.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211098.1;transl_table=11
NC_004088.1	RefSeq	gene	2783288	2783614	.	+	.	ID=gene2597;Name=Y_RS13025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13025
NC_004088.1	Protein Homology	CDS	2783288	2783614	.	+	0	ID=cds2522;Parent=gene2597;Dbxref=Genbank:WP_002211097.1;Name=WP_002211097.1;gbkey=CDS;product=acyl carrier protein;protein_id=WP_002211097.1;transl_table=11
NC_004088.1	RefSeq	gene	2783627	2783857	.	-	.	ID=gene2598;Name=Y_RS13030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13030
NC_004088.1	Protein Homology	CDS	2783627	2783857	.	-	0	ID=cds2523;Parent=gene2598;Dbxref=Genbank:WP_002218131.1;Name=WP_002218131.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002218131.1;transl_table=11
NC_004088.1	RefSeq	gene	2784137	2784478	.	-	.	ID=gene2599;Name=Y_RS13035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13035;old_locus_tag=y2521
NC_004088.1	Protein Homology	CDS	2784137	2784478	.	-	0	ID=cds2524;Parent=gene2599;Dbxref=Genbank:WP_002211095.1;Name=WP_002211095.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211095.1;transl_table=11
NC_004088.1	RefSeq	gene	2784575	2785459	.	-	.	ID=gene2600;Name=Y_RS13040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13040;old_locus_tag=y2522
NC_004088.1	Protein Homology	CDS	2784575	2785459	.	-	0	ID=cds2525;Parent=gene2600;Dbxref=Genbank:WP_002211094.1;Name=WP_002211094.1;gbkey=CDS;product=copper resistance protein D;protein_id=WP_002211094.1;transl_table=11
NC_004088.1	RefSeq	gene	2785462	2785848	.	-	.	ID=gene2601;Name=Y_RS13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13045
NC_004088.1	Protein Homology	CDS	2785462	2785848	.	-	0	ID=cds2526;Parent=gene2601;Dbxref=Genbank:WP_002211093.1;Name=WP_002211093.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211093.1;transl_table=11
NC_004088.1	RefSeq	gene	2786245	2786754	.	-	.	ID=gene2602;Name=Y_RS13050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13050;old_locus_tag=y2524
NC_004088.1	Protein Homology	CDS	2786245	2786754	.	-	0	ID=cds2527;Parent=gene2602;Dbxref=Genbank:WP_002211092.1;Name=WP_002211092.1;Note=cytoplasmic iron storage protein;gbkey=CDS;product=ferritin;protein_id=WP_002211092.1;transl_table=11
NC_004088.1	RefSeq	gene	2787155	2787385	.	+	.	ID=gene2603;Name=Y_RS13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13055;old_locus_tag=y2525
NC_004088.1	Protein Homology	CDS	2787155	2787385	.	+	0	ID=cds2528;Parent=gene2603;Dbxref=Genbank:WP_002211091.1;Name=WP_002211091.1;gbkey=CDS;product=DNA polymerase III subunit theta;protein_id=WP_002211091.1;transl_table=11
NC_004088.1	RefSeq	gene	2787445	2788395	.	-	.	ID=gene2604;Name=Y_RS13060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13060;old_locus_tag=y2526
NC_004088.1	Protein Homology	CDS	2787445	2788395	.	-	0	ID=cds2529;Parent=gene2604;Dbxref=Genbank:WP_002211090.1;Name=WP_002211090.1;gbkey=CDS;product=proline iminopeptidase;protein_id=WP_002211090.1;transl_table=11
NC_004088.1	RefSeq	gene	2789117	2791168	.	-	.	ID=gene2605;Name=Y_RS13065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13065;old_locus_tag=y2527
NC_004088.1	Protein Homology	CDS	2789117	2791168	.	-	0	ID=cds2530;Parent=gene2605;Dbxref=Genbank:WP_002231190.1;Name=WP_002231190.1;Note=PtrB%3B oligopeptidase that cleaves peptide bonds following arginine and lysine residues;gbkey=CDS;product=protease;protein_id=WP_002231190.1;transl_table=11
NC_004088.1	RefSeq	gene	2791478	2791903	.	-	.	ID=gene2606;Name=Y_RS13070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13070;old_locus_tag=y2528
NC_004088.1	Protein Homology	CDS	2791478	2791903	.	-	0	ID=cds2531;Parent=gene2606;Dbxref=Genbank:WP_002211087.1;Name=WP_002211087.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211087.1;transl_table=11
NC_004088.1	RefSeq	gene	2791995	2792303	.	-	.	ID=gene2607;Name=Y_RS13075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13075;old_locus_tag=y2529
NC_004088.1	Protein Homology	CDS	2791995	2792303	.	-	0	ID=cds2532;Parent=gene2607;Dbxref=Genbank:WP_002211086.1;Name=WP_002211086.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211086.1;transl_table=11
NC_004088.1	RefSeq	gene	2792343	2792663	.	-	.	ID=gene2608;Name=Y_RS13080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13080;old_locus_tag=y2530
NC_004088.1	Protein Homology	CDS	2792343	2792663	.	-	0	ID=cds2533;Parent=gene2608;Dbxref=Genbank:WP_002211085.1;Name=WP_002211085.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211085.1;transl_table=11
NC_004088.1	RefSeq	gene	2792757	2794139	.	-	.	ID=gene2609;Name=Y_RS13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13085;old_locus_tag=y2531
NC_004088.1	Protein Homology	CDS	2792757	2794139	.	-	0	ID=cds2534;Parent=gene2609;Dbxref=Genbank:WP_002211084.1;Name=WP_002211084.1;Note=exhibits an RNA-dependent ATPase activity%2C specifically stimulated by bacterial 23S rRNA;gbkey=CDS;product=RNA helicase;protein_id=WP_002211084.1;transl_table=11
NC_004088.1	RefSeq	gene	2794452	2795633	.	+	.	ID=gene2610;Name=Y_RS13090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13090;old_locus_tag=y2533
NC_004088.1	Protein Homology	CDS	2794452	2795633	.	+	0	ID=cds2535;Parent=gene2610;Dbxref=Genbank:WP_002211083.1;Name=WP_002211083.1;gbkey=CDS;product=phosphoribosylglycinamide formyltransferase 2;protein_id=WP_002211083.1;transl_table=11
NC_004088.1	RefSeq	gene	2795759	2796016	.	-	.	ID=gene2611;Name=Y_RS13095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13095;old_locus_tag=y2534
NC_004088.1	Protein Homology	CDS	2795759	2796016	.	-	0	ID=cds2536;Parent=gene2611;Dbxref=Genbank:WP_002211082.1;Name=WP_002211082.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211082.1;transl_table=11
NC_004088.1	RefSeq	gene	2796181	2797557	.	+	.	ID=gene2612;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=Y_RS13100;old_locus_tag=y2535
NC_004088.1	Protein Homology	CDS	2796181	2797557	.	+	0	ID=cds2537;Parent=gene2612;Dbxref=Genbank:WP_002211081.1;Name=WP_002211081.1;Note=para-aminobenzoate synthase component 1%3B catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine;gbkey=CDS;gene=pabB;product=aminodeoxychorismate synthase component I;protein_id=WP_002211081.1;transl_table=11
NC_004088.1	RefSeq	gene	2797554	2798153	.	+	.	ID=gene2613;Name=Y_RS13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13105;old_locus_tag=y2536
NC_004088.1	Protein Homology	CDS	2797554	2798153	.	+	0	ID=cds2538;Parent=gene2613;Dbxref=Genbank:WP_002211080.1;Name=WP_002211080.1;gbkey=CDS;product=NUDIX hydrolase;protein_id=WP_002211080.1;transl_table=11
NC_004088.1	RefSeq	gene	2798861	2800225	.	+	.	ID=gene2614;Name=Y_RS13110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13110;old_locus_tag=y2537
NC_004088.1	Protein Homology	CDS	2798861	2800225	.	+	0	ID=cds2539;Parent=gene2614;Dbxref=Genbank:WP_002211079.1;Name=WP_002211079.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=L-serine dehydratase;protein_id=WP_002211079.1;transl_table=11
NC_004088.1	RefSeq	gene	2800505	2801002	.	-	.	ID=gene2615;Name=hpaC;gbkey=Gene;gene=hpaC;gene_biotype=protein_coding;locus_tag=Y_RS13115;old_locus_tag=y2538
NC_004088.1	Protein Homology	CDS	2800505	2801002	.	-	0	ID=cds2540;Parent=gene2615;Dbxref=Genbank:WP_002211078.1;Name=WP_002211078.1;Note=catalyzes the reduction of MN%2C FAD and riboflavin by NADH;gbkey=CDS;gene=hpaC;product=4-hydroxyphenylacetate 3-monooxygenase;protein_id=WP_002211078.1;transl_table=11
NC_004088.1	RefSeq	gene	2801023	2802585	.	-	.	ID=gene2616;Name=Y_RS13120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13120;old_locus_tag=y2539
NC_004088.1	Protein Homology	CDS	2801023	2802585	.	-	0	ID=cds2541;Parent=gene2616;Dbxref=Genbank:WP_002211077.1;Name=WP_002211077.1;gbkey=CDS;product=4-hydroxyphenylacetate 3-monooxygenase;protein_id=WP_002211077.1;transl_table=11
NC_004088.1	RefSeq	gene	2802653	2804020	.	-	.	ID=gene2617;Name=Y_RS13125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13125;old_locus_tag=y2540
NC_004088.1	Protein Homology	CDS	2802653	2804020	.	-	0	ID=cds2542;Parent=gene2617;Dbxref=Genbank:WP_002211076.1;Name=WP_002211076.1;gbkey=CDS;product=4-hydroxyphenylacetate permease;protein_id=WP_002211076.1;transl_table=11
NC_004088.1	RefSeq	gene	2804046	2804852	.	-	.	ID=gene2618;Name=Y_RS13130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13130;old_locus_tag=y2541
NC_004088.1	Protein Homology	CDS	2804046	2804852	.	-	0	ID=cds2543;Parent=gene2618;Dbxref=Genbank:WP_002211075.1;Name=WP_002211075.1;gbkey=CDS;product=alpha-dehydro-beta-deoxy-D-glucarate aldolase;protein_id=WP_002211075.1;transl_table=11
NC_004088.1	RefSeq	gene	2804863	2805666	.	-	.	ID=gene2619;Name=Y_RS13135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13135;old_locus_tag=y2542
NC_004088.1	Protein Homology	CDS	2804863	2805666	.	-	0	ID=cds2544;Parent=gene2619;Dbxref=Genbank:WP_002211074.1;Name=WP_002211074.1;gbkey=CDS;product=2-oxo-hept-3-ene-1%2C7-dioate hydratase;protein_id=WP_002211074.1;transl_table=11
NC_004088.1	RefSeq	gene	2805660	2806058	.	-	.	ID=gene2620;Name=Y_RS13140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13140;old_locus_tag=y2544
NC_004088.1	Protein Homology	CDS	2805660	2806058	.	-	0	ID=cds2545;Parent=gene2620;Dbxref=Genbank:WP_002211073.1;Name=WP_002211073.1;Note=catalyzes the formation of 5-oxo-pent-3-ene-1%2C2%2C5-tricarboxylic acid from 5-carboxymethyl-2-hydroxy-muconic acid;gbkey=CDS;product=5-carboxymethyl-2-hydroxymuconate isomerase;protein_id=WP_002211073.1;transl_table=11
NC_004088.1	RefSeq	gene	2806083	2806940	.	-	.	ID=gene2621;Name=Y_RS13145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13145;old_locus_tag=y2545
NC_004088.1	Protein Homology	CDS	2806083	2806940	.	-	0	ID=cds2546;Parent=gene2621;Dbxref=Genbank:WP_002211072.1;Name=WP_002211072.1;gbkey=CDS;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase;protein_id=WP_002211072.1;transl_table=11
NC_004088.1	RefSeq	gene	2807059	2808456	.	-	.	ID=gene2622;Name=Y_RS13150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13150;old_locus_tag=y2546
NC_004088.1	Protein Homology	CDS	2807059	2808456	.	-	0	ID=cds2547;Parent=gene2622;Dbxref=Genbank:WP_002211071.1;Name=WP_002211071.1;Note=catalyzes the formation of betaine from betaine aldehyde;gbkey=CDS;product=betaine-aldehyde dehydrogenase;protein_id=WP_002211071.1;transl_table=11
NC_004088.1	RefSeq	gene	2808453	2809217	.	-	.	ID=gene2623;Name=Y_RS13155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13155
NC_004088.1	Protein Homology	CDS	2808453	2809217	.	-	0	ID=cds2548;Parent=gene2623;Dbxref=Genbank:WP_002214882.1;Name=WP_002214882.1;gbkey=CDS;product=2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase;protein_id=WP_002214882.1;transl_table=11
NC_004088.1	RefSeq	gene	2809214	2809846	.	-	.	ID=gene2624;Name=Y_RS13160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13160
NC_004088.1	Protein Homology	CDS	2809214	2809846	.	-	0	ID=cds2549;Parent=gene2624;Dbxref=Genbank:WP_002214880.1;Name=WP_002214880.1;gbkey=CDS;product=2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase;protein_id=WP_002214880.1;transl_table=11
NC_004088.1	RefSeq	gene	2810230	2810697	.	+	.	ID=gene2625;Name=Y_RS13165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13165;old_locus_tag=y2548
NC_004088.1	Protein Homology	CDS	2810230	2810697	.	+	0	ID=cds2550;Parent=gene2625;Dbxref=Genbank:WP_002211070.1;Name=WP_002211070.1;gbkey=CDS;product=homoprotocatechuate degradative operon repressor;protein_id=WP_002211070.1;transl_table=11
NC_004088.1	RefSeq	gene	2810799	2812175	.	-	.	ID=gene2626;Name=Y_RS13170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13170;old_locus_tag=y2549
NC_004088.1	Protein Homology	CDS	2810799	2812175	.	-	0	ID=cds2551;Parent=gene2626;Dbxref=Genbank:WP_002358805.1;Name=WP_002358805.1;gbkey=CDS;product=membrane protein;protein_id=WP_002358805.1;transl_table=11
NC_004088.1	RefSeq	gene	2812963	2813937	.	+	.	ID=gene2627;Name=Y_RS13175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13175;old_locus_tag=y2551
NC_004088.1	Protein Homology	CDS	2812963	2813937	.	+	0	ID=cds2552;Parent=gene2627;Dbxref=Genbank:WP_002211069.1;Name=WP_002211069.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIA transfers a phosphoryl group to subunit IIB%3B subunit IIB transfers the phosphoryl group to the substrate;gbkey=CDS;product=PTS mannose transporter subunit IIAB;protein_id=WP_002211069.1;transl_table=11
NC_004088.1	RefSeq	gene	2814029	2814826	.	+	.	ID=gene2628;Name=Y_RS13180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13180;old_locus_tag=y2552
NC_004088.1	Protein Homology	CDS	2814029	2814826	.	+	0	ID=cds2553;Parent=gene2628;Dbxref=Genbank:WP_002211068.1;Name=WP_002211068.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site;gbkey=CDS;product=PTS mannose transporter subunit IIC;protein_id=WP_002211068.1;transl_table=11
NC_004088.1	RefSeq	gene	2814842	2815720	.	+	.	ID=gene2629;Name=Y_RS13185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13185;old_locus_tag=y2553
NC_004088.1	Protein Homology	CDS	2814842	2815720	.	+	0	ID=cds2554;Parent=gene2629;Dbxref=Genbank:WP_002211067.1;Name=WP_002211067.1;Note=hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IID with IIC forms the translocation channel;gbkey=CDS;product=PTS mannose transporter subunit IID;protein_id=WP_002211067.1;transl_table=11
NC_004088.1	RefSeq	gene	2815920	2816381	.	+	.	ID=gene2630;Name=Y_RS13190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13190;old_locus_tag=y2554
NC_004088.1	Protein Homology	CDS	2815920	2816381	.	+	0	ID=cds2555;Parent=gene2630;Dbxref=Genbank:WP_002211066.1;Name=WP_002211066.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211066.1;transl_table=11
NC_004088.1	RefSeq	gene	2816810	2817379	.	+	.	ID=gene2631;Name=Y_RS13195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13195;old_locus_tag=y2555
NC_004088.1	Protein Homology	CDS	2816810	2817379	.	+	0	ID=cds2556;Parent=gene2631;Dbxref=Genbank:WP_002211065.1;Name=WP_002211065.1;Note=membrane protein YebN;gbkey=CDS;product=membrane protein;protein_id=WP_002211065.1;transl_table=11
NC_004088.1	RefSeq	gene	2817540	2819753	.	-	.	ID=gene2632;Name=Y_RS13200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13200;old_locus_tag=y2556
NC_004088.1	Protein Homology	CDS	2817540	2819753	.	-	0	ID=cds2557;Parent=gene2632;Dbxref=Genbank:WP_002211064.1;Name=WP_002211064.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_002211064.1;transl_table=11
NC_004088.1	RefSeq	gene	2820175	2822257	.	+	.	ID=gene2633;Name=Y_RS13205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS13205;pseudo=true
NC_004088.1	Protein Homology	CDS	2820175	2822257	.	+	0	ID=cds2558;Parent=gene2633;exception=annotated by transcript or proteomic data;gbkey=CDS;product=diguanylate cyclase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2822479	2822757	.	+	.	ID=gene2634;Name=Y_RS13210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13210;old_locus_tag=y2560
NC_004088.1	Protein Homology	CDS	2822479	2822757	.	+	0	ID=cds2559;Parent=gene2634;Dbxref=Genbank:WP_002211062.1;Name=WP_002211062.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211062.1;transl_table=11
NC_004088.1	RefSeq	gene	2822979	2823818	.	-	.	ID=gene2635;Name=Y_RS13215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13215;old_locus_tag=y2561
NC_004088.1	Protein Homology	CDS	2822979	2823818	.	-	0	ID=cds2560;Parent=gene2635;Dbxref=Genbank:WP_002211061.1;Name=WP_002211061.1;gbkey=CDS;product=23S rRNA methyltransferase;protein_id=WP_002211061.1;transl_table=11
NC_004088.1	RefSeq	gene	2824213	2824950	.	+	.	ID=gene2636;Name=Y_RS13220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13220;old_locus_tag=y2562
NC_004088.1	Protein Homology	CDS	2824213	2824950	.	+	0	ID=cds2561;Parent=gene2636;Dbxref=Genbank:WP_002231199.1;Name=WP_002231199.1;gbkey=CDS;product=polyphenol oxidoreductase;protein_id=WP_002231199.1;transl_table=11
NC_004088.1	cmsearch	region	2824998	2825426	.	-	.	ID=id316;Note=cspA;gbkey=misc_feature
NC_004088.1	RefSeq	gene	2825041	2825250	.	-	.	ID=gene2637;Name=Y_RS13225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13225;old_locus_tag=y5003
NC_004088.1	Protein Homology	CDS	2825041	2825250	.	-	0	ID=cds2562;Parent=gene2637;Dbxref=Genbank:WP_002221949.1;Name=WP_002221949.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_002221949.1;transl_table=11
NC_004088.1	RefSeq	gene	2825293	2825409	.	-	.	ID=gene2638;Name=Y_RS13230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13230
NC_004088.1	Protein Homology	CDS	2825293	2825409	.	-	0	ID=cds2563;Parent=gene2638;Dbxref=Genbank:WP_002211058.1;Name=WP_002211058.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211058.1;transl_table=11
NC_004088.1	RefSeq	gene	2826175	2826396	.	-	.	ID=gene2639;Name=Y_RS13235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13235
NC_004088.1	Protein Homology	CDS	2826175	2826396	.	-	0	ID=cds2564;Parent=gene2639;Dbxref=Genbank:WP_002430102.1;Name=WP_002430102.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002430102.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	2826267	2826285	.	+	.	ID=id317;Dbxref=CollecTF:EXPSITE_00000c40;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y2563;gbkey=protein_bind
NC_004088.1	RefSeq	gene	2826411	2827010	.	+	.	ID=gene2640;Name=Y_RS13240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13240;old_locus_tag=y2563
NC_004088.1	Protein Homology	CDS	2826411	2827010	.	+	0	ID=cds2565;Parent=gene2640;Dbxref=Genbank:WP_002221007.1;Name=WP_002221007.1;gbkey=CDS;product=lipid A palmitoyltransferase PagP;protein_id=WP_002221007.1;transl_table=11
NC_004088.1	RefSeq	gene	2827315	2828688	.	-	.	ID=gene2641;Name=Y_RS13245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13245;old_locus_tag=y2564
NC_004088.1	Protein Homology	CDS	2827315	2828688	.	-	0	ID=cds2566;Parent=gene2641;Dbxref=Genbank:WP_002211055.1;Name=WP_002211055.1;gbkey=CDS;product=aromatic amino acid transporter;protein_id=WP_002211055.1;transl_table=11
NC_004088.1	RefSeq	gene	2828925	2829170	.	-	.	ID=gene2642;Name=Y_RS13250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13250
NC_004088.1	Protein Homology	CDS	2828925	2829170	.	-	0	ID=cds2567;Parent=gene2642;Dbxref=Genbank:WP_002211054.1;Name=WP_002211054.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211054.1;transl_table=11
NC_004088.1	RefSeq	gene	2829279	2829578	.	-	.	ID=gene2643;Name=Y_RS13255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13255;old_locus_tag=y2566
NC_004088.1	Protein Homology	CDS	2829279	2829578	.	-	0	ID=cds2568;Parent=gene2643;Dbxref=Genbank:WP_002211053.1;Name=WP_002211053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211053.1;transl_table=11
NC_004088.1	RefSeq	gene	2829841	2830116	.	-	.	ID=gene2644;Name=Y_RS13260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13260;old_locus_tag=y2567
NC_004088.1	Protein Homology	CDS	2829841	2830116	.	-	0	ID=cds2569;Parent=gene2644;Dbxref=Genbank:WP_002216495.1;Name=WP_002216495.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216495.1;transl_table=11
NC_004088.1	RefSeq	gene	2830699	2830932	.	+	.	ID=gene2645;Name=Y_RS13265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13265;old_locus_tag=y2568
NC_004088.1	Protein Homology	CDS	2830699	2830932	.	+	0	ID=cds2570;Parent=gene2645;Dbxref=Genbank:WP_002216493.1;Name=WP_002216493.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216493.1;transl_table=11
NC_004088.1	RefSeq	gene	2831023	2831262	.	-	.	ID=gene2646;Name=Y_RS13270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13270;old_locus_tag=y2569
NC_004088.1	Protein Homology	CDS	2831023	2831262	.	-	0	ID=cds2571;Parent=gene2646;Dbxref=Genbank:WP_002211050.1;Name=WP_002211050.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211050.1;transl_table=11
NC_004088.1	RefSeq	gene	2831474	2831587	.	-	.	ID=gene2647;Name=Y_RS13275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13275
NC_004088.1	Protein Homology	CDS	2831474	2831587	.	-	0	ID=cds2572;Parent=gene2647;Dbxref=Genbank:WP_002211049.1;Name=WP_002211049.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211049.1;transl_table=11
NC_004088.1	RefSeq	gene	2831818	2832204	.	+	.	ID=gene2648;Name=Y_RS13280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13280;old_locus_tag=y2570
NC_004088.1	Protein Homology	CDS	2831818	2832204	.	+	0	ID=cds2573;Parent=gene2648;Dbxref=Genbank:WP_002211048.1;Name=WP_002211048.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002211048.1;transl_table=11
NC_004088.1	RefSeq	gene	2832286	2832450	.	-	.	ID=gene2649;Name=Y_RS13285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13285;old_locus_tag=y2571
NC_004088.1	Protein Homology	CDS	2832286	2832450	.	-	0	ID=cds2574;Parent=gene2649;Dbxref=Genbank:WP_002211047.1;Name=WP_002211047.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211047.1;transl_table=11
NC_004088.1	RefSeq	gene	2833106	2834824	.	+	.	ID=gene2650;Name=Y_RS13290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13290;old_locus_tag=y2573
NC_004088.1	Protein Homology	CDS	2833106	2834824	.	+	0	ID=cds2575;Parent=gene2650;Dbxref=Genbank:WP_002211045.1;Name=WP_002211045.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002211045.1;transl_table=11
NC_004088.1	RefSeq	gene	2834927	2835778	.	+	.	ID=gene2651;Name=Y_RS13295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13295;old_locus_tag=y2574
NC_004088.1	Protein Homology	CDS	2834927	2835778	.	+	0	ID=cds2576;Parent=gene2651;Dbxref=Genbank:WP_002211044.1;Name=WP_002211044.1;gbkey=CDS;product=RIO1 family protein kinase;protein_id=WP_002211044.1;transl_table=11
NC_004088.1	RefSeq	gene	2836015	2836299	.	+	.	ID=gene2652;Name=Y_RS13300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13300;old_locus_tag=y2575
NC_004088.1	Protein Homology	CDS	2836015	2836299	.	+	0	ID=cds2577;Parent=gene2652;Dbxref=Genbank:WP_002211043.1;Name=WP_002211043.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211043.1;transl_table=11
NC_004088.1	RefSeq	gene	2836689	2837501	.	+	.	ID=gene2653;Name=Y_RS13305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13305;old_locus_tag=y2576
NC_004088.1	Protein Homology	CDS	2836689	2837501	.	+	0	ID=cds2578;Parent=gene2653;Dbxref=Genbank:WP_002211042.1;Name=WP_002211042.1;Note=Mlc anti-repressor%3B regulates ptsG by binding and inactivating Mlc;gbkey=CDS;product=protein MtfA;protein_id=WP_002211042.1;transl_table=11
NC_004088.1	RefSeq	gene	2837679	2837754	.	+	.	ID=gene2654;Name=Y_RS13310;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS13310;old_locus_tag=yt053
NC_004088.1	tRNAscan-SE	tRNA	2837679	2837754	.	+	.	ID=rna70;Parent=gene2654;anticodon=(pos:2837712..2837714);gbkey=tRNA;product=tRNA-Asn
NC_004088.1	tRNAscan-SE	exon	2837679	2837754	.	+	.	ID=id318;Parent=rna70;anticodon=(pos:2837712..2837714);gbkey=tRNA;product=tRNA-Asn
NC_004088.1	RefSeq	gene	2837902	2838159	.	-	.	ID=gene2655;Name=Y_RS13315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13315
NC_004088.1	Protein Homology	CDS	2837902	2838159	.	-	0	ID=cds2579;Parent=gene2655;Dbxref=Genbank:WP_002224323.1;Name=WP_002224323.1;gbkey=CDS;product=ThuR%2C regulatory protein for trehalosemaltose transport;protein_id=WP_002224323.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2838106	2840065	.	+	.	ID=id319;gbkey=repeat_region
NC_004088.1	RefSeq	region	2838109	2840062	.	-	.	ID=id320;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2838175	2838954	.	-	.	ID=gene2656;Name=Y_RS13320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13320;old_locus_tag=y2577
NC_004088.1	Protein Homology	CDS	2838175	2838954	.	-	0	ID=cds2580;Parent=gene2656;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	2838954	2839976	.	-	.	ID=gene2657;Name=Y_RS13325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13325;old_locus_tag=y2578
NC_004088.1	Protein Homology	CDS	2838954	2839976	.	-	0	ID=cds2581;Parent=gene2657;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	2839990	2840877	.	-	.	ID=gene2658;Name=Y_RS13330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13330;old_locus_tag=y2579
NC_004088.1	Protein Homology	CDS	2839990	2840877	.	-	0	ID=cds2582;Parent=gene2658;Dbxref=Genbank:WP_002216469.1;Name=WP_002216469.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002216469.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2841310	2842638	.	+	.	ID=id321;gbkey=repeat_region
NC_004088.1	RefSeq	region	2841317	2842631	.	-	.	ID=id322;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2841352	2842560	.	-	.	ID=gene2659;Name=Y_RS13335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13335;old_locus_tag=y2580
NC_004088.1	Protein Homology	CDS	2841352	2842560	.	-	0	ID=cds2583;Parent=gene2659;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2842585	2843862	.	+	.	ID=gene2660;Name=lacY;gbkey=Gene;gene=lacY;gene_biotype=protein_coding;locus_tag=Y_RS13340;old_locus_tag=y2581
NC_004088.1	Protein Homology	CDS	2842585	2843862	.	+	0	ID=cds2584;Parent=gene2660;Dbxref=Genbank:WP_042468818.1;Name=WP_042468818.1;Note=lactose/proton symporter%3B mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides%3B member of major facilitator superfamily%3B functions as a monomer with 12 transmembrane segments;gbkey=CDS;gene=lacY;product=galactoside permease;protein_id=WP_042468818.1;transl_table=11
NC_004088.1	RefSeq	gene	2843940	2846066	.	+	.	ID=gene2661;Name=Y_RS13345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13345;old_locus_tag=y2582
NC_004088.1	Protein Homology	CDS	2843940	2846066	.	+	0	ID=cds2585;Parent=gene2661;Dbxref=Genbank:WP_002213113.1;Name=WP_002213113.1;gbkey=CDS;product=alpha-galactosidase;protein_id=WP_002213113.1;transl_table=11
NC_004088.1	RefSeq	gene	2846083	2846247	.	+	.	ID=gene2662;Name=Y_RS13350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13350
NC_004088.1	Protein Homology	CDS	2846083	2846247	.	+	0	ID=cds2586;Parent=gene2662;Dbxref=Genbank:WP_002216586.1;Name=WP_002216586.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216586.1;transl_table=11
NC_004088.1	RefSeq	gene	2846453	2847193	.	-	.	ID=gene2663;Name=Y_RS13355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13355;old_locus_tag=y2584
NC_004088.1	Protein Homology	CDS	2846453	2847193	.	-	0	ID=cds2587;Parent=gene2663;Dbxref=Genbank:WP_002213120.1;Name=WP_002213120.1;gbkey=CDS;product=4'-phosphopantetheinyl transferase;protein_id=WP_002213120.1;transl_table=11
NC_004088.1	RefSeq	gene	2847689	2848681	.	+	.	ID=gene2664;Name=Y_RS13360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13360;old_locus_tag=y2585
NC_004088.1	Protein Homology	CDS	2847689	2848681	.	+	0	ID=cds2588;Parent=gene2664;Dbxref=Genbank:WP_002213121.1;Name=WP_002213121.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_002213121.1;transl_table=11
NC_004088.1	RefSeq	gene	2848805	2849311	.	+	.	ID=gene2665;Name=Y_RS13365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13365;old_locus_tag=y2586
NC_004088.1	Protein Homology	CDS	2848805	2849311	.	+	0	ID=cds2589;Parent=gene2665;Dbxref=Genbank:WP_002213122.1;Name=WP_002213122.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_002213122.1;transl_table=11
NC_004088.1	RefSeq	gene	2849331	2850623	.	+	.	ID=gene2666;Name=Y_RS13370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13370;old_locus_tag=y2587
NC_004088.1	Protein Homology	CDS	2849331	2850623	.	+	0	ID=cds2590;Parent=gene2666;Dbxref=Genbank:WP_002213124.1;Name=WP_002213124.1;gbkey=CDS;product=membrane protein;protein_id=WP_002213124.1;transl_table=11
NC_004088.1	RefSeq	gene	2850881	2851510	.	+	.	ID=gene2667;Name=Y_RS13375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13375;old_locus_tag=y2588
NC_004088.1	Protein Homology	CDS	2850881	2851510	.	+	0	ID=cds2591;Parent=gene2667;Dbxref=Genbank:WP_002213125.1;Name=WP_002213125.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002213125.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2851926	2852032	.	+	.	ID=id323;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2851956	2852031	.	+	.	ID=gene2668;Name=Y_RS13380;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS13380;old_locus_tag=yt054
NC_004088.1	tRNAscan-SE	tRNA	2851956	2852031	.	+	.	ID=rna71;Parent=gene2668;anticodon=(pos:2851989..2851991);gbkey=tRNA;product=tRNA-Asn
NC_004088.1	tRNAscan-SE	exon	2851956	2852031	.	+	.	ID=id324;Parent=rna71;anticodon=(pos:2851989..2851991);gbkey=tRNA;product=tRNA-Asn
NC_004088.1	RefSeq	gene	2852377	2852916	.	-	.	ID=gene2669;Name=Y_RS13385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13385;old_locus_tag=y2589
NC_004088.1	Protein Homology	CDS	2852377	2852916	.	-	0	ID=cds2592;Parent=gene2669;Dbxref=Genbank:WP_002211926.1;Name=WP_002211926.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211926.1;transl_table=11
NC_004088.1	RefSeq	gene	2853006	2853701	.	-	.	ID=gene2670;Name=Y_RS13390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13390;old_locus_tag=y2590
NC_004088.1	Protein Homology	CDS	2853006	2853701	.	-	0	ID=cds2593;Parent=gene2670;Dbxref=Genbank:WP_002217591.1;Name=WP_002217591.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217591.1;transl_table=11
NC_004088.1	RefSeq	gene	2854278	2855159	.	+	.	ID=gene2671;Name=Y_RS13395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13395;old_locus_tag=y2591
NC_004088.1	Protein Homology	CDS	2854278	2855159	.	+	0	ID=cds2594;Parent=gene2671;Dbxref=Genbank:WP_002211923.1;Name=WP_002211923.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211923.1;transl_table=11
NC_004088.1	RefSeq	gene	2855195	2856535	.	+	.	ID=gene2672;Name=Y_RS13400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13400;old_locus_tag=y2592
NC_004088.1	Protein Homology	CDS	2855195	2856535	.	+	0	ID=cds2595;Parent=gene2672;Dbxref=Genbank:WP_002211922.1;Name=WP_002211922.1;gbkey=CDS;product=sugar transporter;protein_id=WP_002211922.1;transl_table=11
NC_004088.1	RefSeq	gene	2856563	2857960	.	-	.	ID=gene2673;Name=Y_RS13405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13405;old_locus_tag=y2593
NC_004088.1	Protein Homology	CDS	2856563	2857960	.	-	0	ID=cds2596;Parent=gene2673;Dbxref=Genbank:WP_002354070.1;Name=WP_002354070.1;gbkey=CDS;product=MATE family multidrug exporter;protein_id=WP_002354070.1;transl_table=11
NC_004088.1	RefSeq	gene	2858287	2859654	.	+	.	ID=gene2674;Name=Y_RS13410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13410;old_locus_tag=y2595
NC_004088.1	Protein Homology	CDS	2858287	2859654	.	+	0	ID=cds2597;Parent=gene2674;Dbxref=Genbank:WP_002211920.1;Name=WP_002211920.1;Note=catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis;gbkey=CDS;product=argininosuccinate synthase;protein_id=WP_002211920.1;transl_table=11
NC_004088.1	RefSeq	gene	2859859	2861004	.	-	.	ID=gene2675;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=Y_RS13415;old_locus_tag=y2596
NC_004088.1	Protein Homology	CDS	2859859	2861004	.	-	0	ID=cds2598;Parent=gene2675;Dbxref=Genbank:WP_002211919.1;Name=WP_002211919.1;Note=flavin mononucleotide-dependent dehydrogenase%3B functions in aerobic respiration and also has a role in anaerobic nitrate respiration;gbkey=CDS;gene=lldD;product=lactate dehydrogenase;protein_id=WP_002211919.1;transl_table=11
NC_004088.1	RefSeq	gene	2861301	2862578	.	-	.	ID=gene2676;Name=Y_RS13420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13420;old_locus_tag=y2598
NC_004088.1	Protein Homology	CDS	2861301	2862578	.	-	0	ID=cds2599;Parent=gene2676;Dbxref=Genbank:WP_002211917.1;Name=WP_002211917.1;gbkey=CDS;product=fuconate dehydratase;protein_id=WP_002211917.1;transl_table=11
NC_004088.1	RefSeq	gene	2862610	2863452	.	-	.	ID=gene2677;Name=Y_RS13425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13425;old_locus_tag=y2599
NC_004088.1	Protein Homology	CDS	2862610	2863452	.	-	0	ID=cds2600;Parent=gene2677;Dbxref=Genbank:WP_002211916.1;Name=WP_002211916.1;gbkey=CDS;product=hydrolase;protein_id=WP_002211916.1;transl_table=11
NC_004088.1	RefSeq	gene	2863500	2864240	.	-	.	ID=gene2678;Name=Y_RS13430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13430;old_locus_tag=y2600
NC_004088.1	Protein Homology	CDS	2863500	2864240	.	-	0	ID=cds2601;Parent=gene2678;Dbxref=Genbank:WP_002216393.1;Name=WP_002216393.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002216393.1;transl_table=11
NC_004088.1	RefSeq	gene	2864649	2865071	.	+	.	ID=gene2679;Name=Y_RS13435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13435;old_locus_tag=y2601
NC_004088.1	Protein Homology	CDS	2864649	2865071	.	+	0	ID=cds2602;Parent=gene2679;Dbxref=Genbank:WP_002211912.1;Name=WP_002211912.1;gbkey=CDS;product=thiol-disulfide oxidoreductase;protein_id=WP_002211912.1;transl_table=11
NC_004088.1	RefSeq	gene	2865080	2866384	.	-	.	ID=gene2680;Name=Y_RS13440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13440;old_locus_tag=y2602
NC_004088.1	Protein Homology	CDS	2865080	2866384	.	-	0	ID=cds2603;Parent=gene2680;Dbxref=Genbank:WP_002211911.1;Name=WP_002211911.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002211911.1;transl_table=11
NC_004088.1	RefSeq	gene	2867409	2870561	.	+	.	ID=gene2681;Name=Y_RS13445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13445;old_locus_tag=y2605
NC_004088.1	Protein Homology	CDS	2867409	2870561	.	+	0	ID=cds2604;Parent=gene2681;Dbxref=Genbank:WP_002216388.1;Name=WP_002216388.1;gbkey=CDS;product=adhesin;protein_id=WP_002216388.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2870486	2871805	.	+	.	ID=id325;gbkey=repeat_region
NC_004088.1	RefSeq	region	2870489	2871803	.	-	.	ID=id326;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2870524	2871732	.	-	.	ID=gene2682;Name=Y_RS13450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13450;old_locus_tag=y2606
NC_004088.1	Protein Homology	CDS	2870524	2871732	.	-	0	ID=cds2605;Parent=gene2682;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2872103	2872420	.	-	.	ID=gene2683;Name=Y_RS13455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13455;old_locus_tag=y2607
NC_004088.1	Protein Homology	CDS	2872103	2872420	.	-	0	ID=cds2606;Parent=gene2683;Dbxref=Genbank:WP_002217522.1;Name=WP_002217522.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217522.1;transl_table=11
NC_004088.1	RefSeq	gene	2872854	2873963	.	-	.	ID=gene2684;Name=Y_RS13460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13460;old_locus_tag=y2608
NC_004088.1	Protein Homology	CDS	2872854	2873963	.	-	0	ID=cds2607;Parent=gene2684;Dbxref=Genbank:WP_002211905.1;Name=WP_002211905.1;gbkey=CDS;product=thiamine biosynthesis protein ThiF;protein_id=WP_002211905.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	2873948	2873966	.	-	.	ID=id327;Dbxref=CollecTF:EXPSITE_00000d30;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y2608;gbkey=protein_bind
NC_004088.1	RefSeq	protein_binding_site	2874014	2874032	.	-	.	ID=id328;Dbxref=CollecTF:EXPSITE_00000d20;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y2608;gbkey=protein_bind
NC_004088.1	RefSeq	gene	2874256	2875686	.	+	.	ID=gene2685;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=Y_RS13465;old_locus_tag=y2610
NC_004088.1	Protein Homology	CDS	2874256	2875686	.	+	0	ID=cds2608;Parent=gene2685;Dbxref=Genbank:WP_002211904.1;Name=WP_002211904.1;Note=Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates;gbkey=CDS;gene=sbcB;product=exonuclease I;protein_id=WP_002211904.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2875721	2875930	.	+	.	ID=id329;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2876423	2877814	.	-	.	ID=gene2686;Name=Y_RS13470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13470;old_locus_tag=y2612
NC_004088.1	Protein Homology	CDS	2876423	2877814	.	-	0	ID=cds2609;Parent=gene2686;Dbxref=Genbank:WP_002211902.1;Name=WP_002211902.1;gbkey=CDS;product=putrescine/spermidine ABC transporter;protein_id=WP_002211902.1;transl_table=11
NC_004088.1	RefSeq	gene	2877804	2878019	.	-	.	ID=gene2687;Name=Y_RS13475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13475
NC_004088.1	Protein Homology	CDS	2877804	2878019	.	-	0	ID=cds2610;Parent=gene2687;Dbxref=Genbank:WP_002216313.1;Name=WP_002216313.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216313.1;transl_table=11
NC_004088.1	RefSeq	gene	2878273	2879364	.	-	.	ID=gene2688;Name=Y_RS13480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13480;old_locus_tag=y2613
NC_004088.1	Protein Homology	CDS	2878273	2879364	.	-	0	ID=cds2611;Parent=gene2688;Dbxref=Genbank:WP_002216312.1;Name=WP_002216312.1;Note=member of the iron-containing alcohol dehydrogenase family;gbkey=CDS;product=oxidoreductase;protein_id=WP_002216312.1;transl_table=11
NC_004088.1	RefSeq	gene	2879650	2880543	.	+	.	ID=gene2689;Name=Y_RS13485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13485
NC_004088.1	Protein Homology	CDS	2879650	2880543	.	+	0	ID=cds2612;Parent=gene2689;Dbxref=Genbank:WP_002216311.1;Name=WP_002216311.1;gbkey=CDS;product=sugar ABC transporter;protein_id=WP_002216311.1;transl_table=11
NC_004088.1	RefSeq	gene	2880501	2881190	.	+	.	ID=gene2690;Name=Y_RS13490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13490
NC_004088.1	Protein Homology	CDS	2880501	2881190	.	+	0	ID=cds2613;Parent=gene2690;Dbxref=Genbank:WP_002216310.1;Name=WP_002216310.1;gbkey=CDS;product=sugar ABC transporter;protein_id=WP_002216310.1;transl_table=11
NC_004088.1	RefSeq	gene	2881187	2882182	.	+	.	ID=gene2691;Name=Y_RS13495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13495;old_locus_tag=y2615
NC_004088.1	Protein Homology	CDS	2881187	2882182	.	+	0	ID=cds2614;Parent=gene2691;Dbxref=Genbank:WP_002211900.1;Name=WP_002211900.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002211900.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2882412	2882518	.	+	.	ID=id330;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2882427	2882861	.	+	.	ID=gene2692;Name=Y_RS13500;gbkey=Gene;gene_biotype=other;locus_tag=Y_RS13500;old_locus_tag=y2616
NC_004088.1	RefSeq	gene	2883016	2883843	.	-	.	ID=gene2693;Name=Y_RS13505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13505;old_locus_tag=y2617
NC_004088.1	Protein Homology	CDS	2883016	2883843	.	-	0	ID=cds2615;Parent=gene2693;Dbxref=Genbank:WP_002211898.1;Name=WP_002211898.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211898.1;transl_table=11
NC_004088.1	RefSeq	gene	2884549	2885448	.	+	.	ID=gene2694;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=Y_RS13510;old_locus_tag=y2620
NC_004088.1	Protein Homology	CDS	2884549	2885448	.	+	0	ID=cds2616;Parent=gene2694;Dbxref=Genbank:WP_002211896.1;Name=WP_002211896.1;Note=long form of enzyme%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors;gbkey=CDS;gene=hisG;product=ATP phosphoribosyltransferase;protein_id=WP_002211896.1;transl_table=11
NC_004088.1	RefSeq	gene	2885452	2886783	.	+	.	ID=gene2695;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=Y_RS13515;old_locus_tag=y2621
NC_004088.1	Protein Homology	CDS	2885452	2886783	.	+	0	ID=cds2617;Parent=gene2695;Dbxref=Genbank:WP_002211895.1;Name=WP_002211895.1;Note=catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer;gbkey=CDS;gene=hisD;product=histidinol dehydrogenase;protein_id=WP_002211895.1;transl_table=11
NC_004088.1	RefSeq	gene	2886786	2887934	.	+	.	ID=gene2696;Name=Y_RS13520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13520;old_locus_tag=y2622
NC_004088.1	Protein Homology	CDS	2886786	2887934	.	+	0	ID=cds2618;Parent=gene2696;Dbxref=Genbank:WP_002211894.1;Name=WP_002211894.1;Note=catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis;gbkey=CDS;product=histidinol-phosphate aminotransferase;protein_id=WP_002211894.1;transl_table=11
NC_004088.1	RefSeq	gene	2887931	2888998	.	+	.	ID=gene2697;Name=Y_RS13525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13525;old_locus_tag=y2623
NC_004088.1	Protein Homology	CDS	2887931	2888998	.	+	0	ID=cds2619;Parent=gene2697;Dbxref=Genbank:WP_002211893.1;Name=WP_002211893.1;Note=catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate;gbkey=CDS;product=histidine biosynthesis bifunctional protein HisB;protein_id=WP_002211893.1;transl_table=11
NC_004088.1	RefSeq	gene	2888998	2889588	.	+	.	ID=gene2698;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=Y_RS13530;old_locus_tag=y2625
NC_004088.1	Protein Homology	CDS	2888998	2889588	.	+	0	ID=cds2620;Parent=gene2698;Dbxref=Genbank:WP_002211892.1;Name=WP_002211892.1;Note=with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide;gbkey=CDS;gene=hisH;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_002211892.1;transl_table=11
NC_004088.1	RefSeq	gene	2889594	2890331	.	+	.	ID=gene2699;Name=Y_RS13535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13535;old_locus_tag=y2626
NC_004088.1	Protein Homology	CDS	2889594	2890331	.	+	0	ID=cds2621;Parent=gene2699;Dbxref=Genbank:WP_002211891.1;Name=WP_002211891.1;gbkey=CDS;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase;protein_id=WP_002211891.1;transl_table=11
NC_004088.1	RefSeq	gene	2890313	2891089	.	+	.	ID=gene2700;Name=Y_RS13540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13540;old_locus_tag=y2627
NC_004088.1	Protein Homology	CDS	2890313	2891089	.	+	0	ID=cds2622;Parent=gene2700;Dbxref=Genbank:WP_002211890.1;Name=WP_002211890.1;gbkey=CDS;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_002211890.1;transl_table=11
NC_004088.1	RefSeq	gene	2891083	2891697	.	+	.	ID=gene2701;Name=Y_RS13545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13545;old_locus_tag=y2628
NC_004088.1	Protein Homology	CDS	2891083	2891697	.	+	0	ID=cds2623;Parent=gene2701;Dbxref=Genbank:WP_002211889.1;Name=WP_002211889.1;Note=catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis;gbkey=CDS;product=histidine biosynthesis bifunctional protein HisIE;protein_id=WP_002211889.1;transl_table=11
NC_004088.1	RefSeq	gene	2891897	2893306	.	-	.	ID=gene2702;Name=Y_RS13550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13550;old_locus_tag=y2629
NC_004088.1	Protein Homology	CDS	2891897	2893306	.	-	0	ID=cds2624;Parent=gene2702;Dbxref=Genbank:WP_002211888.1;Name=WP_002211888.1;Note=catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate;gbkey=CDS;product=6-phosphogluconate dehydrogenase;protein_id=WP_002211888.1;transl_table=11
NC_004088.1	RefSeq	gene	2893692	2894585	.	-	.	ID=gene2703;Name=Y_RS13555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13555;old_locus_tag=y2630
NC_004088.1	Protein Homology	CDS	2893692	2894585	.	-	0	ID=cds2625;Parent=gene2703;Dbxref=Genbank:WP_002211887.1;Name=WP_002211887.1;gbkey=CDS;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=WP_002211887.1;transl_table=11
NC_004088.1	RefSeq	gene	2894669	2895559	.	-	.	ID=gene2704;Name=Y_RS13560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13560;old_locus_tag=y2631
NC_004088.1	Protein Homology	CDS	2894669	2895559	.	-	0	ID=cds2626;Parent=gene2704;Dbxref=Genbank:WP_002211886.1;Name=WP_002211886.1;Note=together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase%2C an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate%3B regulates cellular levels of UDP-glucose;gbkey=CDS;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=WP_002211886.1;transl_table=11
NC_004088.1	RefSeq	gene	2896505	2898318	.	+	.	ID=gene2705;Name=Y_RS13565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS13565;pseudo=true
NC_004088.1	Protein Homology	CDS	2896505	2898318	.	+	0	ID=cds2627;Parent=gene2705;exception=annotated by transcript or proteomic data;gbkey=CDS;product=IucA/IucC family protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2898531	2900792	.	+	.	ID=gene2706;Name=Y_RS13570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13570;old_locus_tag=y2633
NC_004088.1	Protein Homology	CDS	2898531	2900792	.	+	0	ID=cds2628;Parent=gene2706;Dbxref=Genbank:WP_002211883.1;Name=WP_002211883.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_002211883.1;transl_table=11
NC_004088.1	RefSeq	gene	2900882	2901961	.	+	.	ID=gene2707;Name=Y_RS13575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13575;old_locus_tag=y2634
NC_004088.1	Protein Homology	CDS	2900882	2901961	.	+	0	ID=cds2629;Parent=gene2707;Dbxref=Genbank:WP_002211882.1;Name=WP_002211882.1;gbkey=CDS;product=iron-siderophore ABC transporter substrate-binding protein;protein_id=WP_002211882.1;transl_table=11
NC_004088.1	RefSeq	gene	2901958	2902998	.	+	.	ID=gene2708;Name=Y_RS13580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13580;old_locus_tag=y2635
NC_004088.1	Protein Homology	CDS	2901958	2902998	.	+	0	ID=cds2630;Parent=gene2708;Dbxref=Genbank:WP_002211881.1;Name=WP_002211881.1;gbkey=CDS;product=iron ABC transporter permease;protein_id=WP_002211881.1;transl_table=11
NC_004088.1	RefSeq	gene	2902985	2904025	.	+	.	ID=gene2709;Name=Y_RS13585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13585;old_locus_tag=y2636
NC_004088.1	Protein Homology	CDS	2902985	2904025	.	+	0	ID=cds2631;Parent=gene2709;Dbxref=Genbank:WP_002211880.1;Name=WP_002211880.1;gbkey=CDS;product=iron ABC transporter permease;protein_id=WP_002211880.1;transl_table=11
NC_004088.1	RefSeq	gene	2904052	2904870	.	+	.	ID=gene2710;Name=Y_RS13590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13590;old_locus_tag=y2637
NC_004088.1	Protein Homology	CDS	2904052	2904870	.	+	0	ID=cds2632;Parent=gene2710;Dbxref=Genbank:WP_002211879.1;Name=WP_002211879.1;Note=with FepBDE is involved in the transport of ferric enterobactin;gbkey=CDS;product=ABC transporter;protein_id=WP_002211879.1;transl_table=11
NC_004088.1	RefSeq	gene	2904979	2906823	.	-	.	ID=gene2711;Name=Y_RS13595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13595;old_locus_tag=y2638
NC_004088.1	Protein Homology	CDS	2904979	2906823	.	-	0	ID=cds2633;Parent=gene2711;Dbxref=Genbank:WP_002215001.1;Name=WP_002215001.1;gbkey=CDS;product=siderophore biosynthetic enzyme;protein_id=WP_002215001.1;transl_table=11
NC_004088.1	RefSeq	gene	2906820	2907398	.	-	.	ID=gene2712;Name=Y_RS13600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13600;old_locus_tag=y2639
NC_004088.1	Protein Homology	CDS	2906820	2907398	.	-	0	ID=cds2634;Parent=gene2712;Dbxref=Genbank:WP_002214999.1;Name=WP_002214999.1;gbkey=CDS;product=siderophore biosynthesis protein;protein_id=WP_002214999.1;transl_table=11
NC_004088.1	RefSeq	gene	2907398	2908696	.	-	.	ID=gene2713;Name=Y_RS13605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13605;old_locus_tag=y2640
NC_004088.1	Protein Homology	CDS	2907398	2908696	.	-	0	ID=cds2635;Parent=gene2713;Dbxref=Genbank:WP_002211878.1;Name=WP_002211878.1;gbkey=CDS;product=lysine N6-hydroxylase/L-ornithine N5-oxygenase family;protein_id=WP_002211878.1;transl_table=11
NC_004088.1	RefSeq	gene	2908731	2910278	.	-	.	ID=gene2714;Name=Y_RS13610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13610;old_locus_tag=y2641
NC_004088.1	Protein Homology	CDS	2908731	2910278	.	-	0	ID=cds2636;Parent=gene2714;Dbxref=Genbank:WP_002211877.1;Name=WP_002211877.1;gbkey=CDS;product=cytochrome C biogenesis protein CcmH;protein_id=WP_002211877.1;transl_table=11
NC_004088.1	RefSeq	gene	2910430	2911209	.	-	.	ID=gene2715;Name=Y_RS13615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13615;old_locus_tag=y2642
NC_004088.1	Protein Homology	CDS	2910430	2911209	.	-	0	ID=cds2637;Parent=gene2715;Dbxref=Genbank:WP_002211876.1;Name=WP_002211876.1;gbkey=CDS;product=iron reductase;protein_id=WP_002211876.1;transl_table=11
NC_004088.1	RefSeq	gene	2911651	2913264	.	+	.	ID=gene2716;Name=Y_RS13620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13620;old_locus_tag=y2643
NC_004088.1	Protein Homology	CDS	2911651	2913264	.	+	0	ID=cds2638;Parent=gene2716;Dbxref=Genbank:WP_002223436.1;Name=WP_002223436.1;gbkey=CDS;product=membrane protein;protein_id=WP_002223436.1;transl_table=11
NC_004088.1	RefSeq	gene	2913409	2915265	.	-	.	ID=gene2717;Name=Y_RS13625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13625;old_locus_tag=y2644
NC_004088.1	Protein Homology	CDS	2913409	2915265	.	-	0	ID=cds2639;Parent=gene2717;Dbxref=Genbank:WP_002211874.1;Name=WP_002211874.1;gbkey=CDS;product=membrane assembly protein AsmA;protein_id=WP_002211874.1;transl_table=11
NC_004088.1	RefSeq	gene	2915452	2916033	.	-	.	ID=gene2718;Name=Y_RS13630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13630;old_locus_tag=y2645
NC_004088.1	Protein Homology	CDS	2915452	2916033	.	-	0	ID=cds2640;Parent=gene2718;Dbxref=Genbank:WP_002211873.1;Name=WP_002211873.1;gbkey=CDS;product=deoxycytidine triphosphate deaminase;protein_id=WP_002211873.1;transl_table=11
NC_004088.1	RefSeq	gene	2916138	2916779	.	-	.	ID=gene2719;Name=Y_RS13635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13635;old_locus_tag=y2646
NC_004088.1	Protein Homology	CDS	2916138	2916779	.	-	0	ID=cds2641;Parent=gene2719;Dbxref=Genbank:WP_002211872.1;Name=WP_002211872.1;gbkey=CDS;product=uridine kinase;protein_id=WP_002211872.1;transl_table=11
NC_004088.1	RefSeq	gene	2917024	2918136	.	-	.	ID=gene2720;Name=Y_RS13640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13640;old_locus_tag=y2647
NC_004088.1	Protein Homology	CDS	2917024	2918136	.	-	0	ID=cds2642;Parent=gene2720;Dbxref=Genbank:WP_002211871.1;Name=WP_002211871.1;gbkey=CDS;product=ATPase;protein_id=WP_002211871.1;transl_table=11
NC_004088.1	RefSeq	gene	2918401	2920428	.	+	.	ID=gene2721;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=Y_RS13645;old_locus_tag=y2648
NC_004088.1	Protein Homology	CDS	2918401	2920428	.	+	0	ID=cds2643;Parent=gene2721;Dbxref=Genbank:WP_002211870.1;Name=WP_002211870.1;Note=methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content;gbkey=CDS;gene=metG;product=methionine--tRNA ligase;protein_id=WP_002211870.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2920481	2921204	.	+	.	ID=id331;gbkey=repeat_region
NC_004088.1	RefSeq	region	2920486	2921195	.	-	.	ID=id332;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2920592	2921050	.	-	.	ID=gene2722;Name=Y_RS13650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13650;old_locus_tag=y2649
NC_004088.1	Protein Homology	CDS	2920592	2921050	.	-	0	ID=cds2644;Parent=gene2722;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	2921040	2921228	.	-	.	ID=gene2723;Name=Y_RS13655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13655
NC_004088.1	Protein Homology	CDS	2921040	2921228	.	-	0	ID=cds2645;Parent=gene2723;Dbxref=Genbank:WP_011171814.1;Name=WP_011171814.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011171814.1;transl_table=11
NC_004088.1	RefSeq	gene	2921268	2921930	.	-	.	ID=gene2724;Name=Y_RS13660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13660;old_locus_tag=y2650
NC_004088.1	Protein Homology	CDS	2921268	2921930	.	-	0	ID=cds2646;Parent=gene2724;Dbxref=Genbank:WP_002228565.1;Name=WP_002228565.1;gbkey=CDS;product=membrane protein;protein_id=WP_002228565.1;transl_table=11
NC_004088.1	RefSeq	gene	2922628	2923704	.	+	.	ID=gene2725;Name=Y_RS13665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13665;old_locus_tag=y2651
NC_004088.1	Protein Homology	CDS	2922628	2923704	.	+	0	ID=cds2647;Parent=gene2725;Dbxref=Genbank:WP_002211975.1;Name=WP_002211975.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002211975.1;transl_table=11
NC_004088.1	RefSeq	gene	2923722	2924975	.	+	.	ID=gene2726;Name=Y_RS13670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13670;old_locus_tag=y2652
NC_004088.1	Protein Homology	CDS	2923722	2924975	.	+	0	ID=cds2648;Parent=gene2726;Dbxref=Genbank:WP_002211974.1;Name=WP_002211974.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211974.1;transl_table=11
NC_004088.1	RefSeq	gene	2925308	2926489	.	+	.	ID=gene2727;Name=Y_RS13675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13675;old_locus_tag=y2653
NC_004088.1	Protein Homology	CDS	2925308	2926489	.	+	0	ID=cds2649;Parent=gene2727;Dbxref=Genbank:WP_002211973.1;Name=WP_002211973.1;gbkey=CDS;product=multidrug resistance protein;protein_id=WP_002211973.1;transl_table=11
NC_004088.1	RefSeq	gene	2926731	2927138	.	+	.	ID=gene2728;Name=Y_RS13680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13680;old_locus_tag=y2654
NC_004088.1	Protein Homology	CDS	2926731	2927138	.	+	0	ID=cds2650;Parent=gene2728;Dbxref=Genbank:WP_002211971.1;Name=WP_002211971.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211971.1;transl_table=11
NC_004088.1	RefSeq	gene	2927135	2927830	.	+	.	ID=gene2729;Name=Y_RS13685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13685;old_locus_tag=y2655
NC_004088.1	Protein Homology	CDS	2927135	2927830	.	+	0	ID=cds2651;Parent=gene2729;Dbxref=Genbank:WP_002211970.1;Name=WP_002211970.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211970.1;transl_table=11
NC_004088.1	RefSeq	gene	2928156	2929040	.	+	.	ID=gene2730;Name=Y_RS13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13690;old_locus_tag=y2657
NC_004088.1	Protein Homology	CDS	2928156	2929040	.	+	0	ID=cds2652;Parent=gene2730;Dbxref=Genbank:WP_002211969.1;Name=WP_002211969.1;Note=Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis;gbkey=CDS;product=cytidine deaminase;protein_id=WP_002211969.1;transl_table=11
NC_004088.1	RefSeq	gene	2929396	2931093	.	+	.	ID=gene2731;Name=Y_RS13695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13695;old_locus_tag=y2658
NC_004088.1	Protein Homology	CDS	2929396	2931093	.	+	0	ID=cds2653;Parent=gene2731;Dbxref=Genbank:WP_002211968.1;Name=WP_002211968.1;Note=malic enzyme%3B oxaloacetate-decarboxylating%3B NAD-dependent%3B catalyzes the formation of pyruvate form malate;gbkey=CDS;product=NAD-dependent malic enzyme;protein_id=WP_002211968.1;transl_table=11
NC_004088.1	RefSeq	gene	2931374	2932111	.	+	.	ID=gene2732;Name=Y_RS13700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13700;old_locus_tag=y2659
NC_004088.1	Protein Homology	CDS	2931374	2932111	.	+	0	ID=cds2654;Parent=gene2732;Dbxref=Genbank:WP_002211966.1;Name=WP_002211966.1;Note=involved in vancomycin sensitivity and other barrier functions of the cell envelope;gbkey=CDS;product=vancomycin high temperature exclusion protein;protein_id=WP_002211966.1;transl_table=11
NC_004088.1	RefSeq	gene	2932556	2933566	.	-	.	ID=gene2733;Name=mglC;gbkey=Gene;gene=mglC;gene_biotype=protein_coding;locus_tag=Y_RS13705;old_locus_tag=y2660
NC_004088.1	Protein Homology	CDS	2932556	2933566	.	-	0	ID=cds2655;Parent=gene2733;Dbxref=Genbank:WP_002211965.1;Name=WP_002211965.1;Note=ABC transporter%3B functions in galactose transport%3B part of MglA2C2B transporter complex;gbkey=CDS;gene=mglC;product=beta-methylgalactoside transporter;protein_id=WP_002211965.1;transl_table=11
NC_004088.1	RefSeq	gene	2933587	2935107	.	-	.	ID=gene2734;Name=Y_RS13710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13710;old_locus_tag=y2661
NC_004088.1	Protein Homology	CDS	2933587	2935107	.	-	0	ID=cds2656;Parent=gene2734;Dbxref=Genbank:WP_002211964.1;Name=WP_002211964.1;gbkey=CDS;product=galactose/methyl galactoside import ATP-binding protein MglA;protein_id=WP_002211964.1;transl_table=11
NC_004088.1	RefSeq	gene	2935337	2936329	.	-	.	ID=gene2735;Name=Y_RS13715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13715;old_locus_tag=y2662
NC_004088.1	Protein Homology	CDS	2935337	2936329	.	-	0	ID=cds2657;Parent=gene2735;Dbxref=Genbank:WP_002211963.1;Name=WP_002211963.1;Note=wtih MglAC is involved in the transport of beta-methylgalactoside;gbkey=CDS;product=methyl-galactoside ABC transporter substrate-binding protein;protein_id=WP_002211963.1;transl_table=11
NC_004088.1	RefSeq	gene	2937077	2938243	.	-	.	ID=gene2736;Name=Y_RS13720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13720;old_locus_tag=y2663
NC_004088.1	Protein Homology	CDS	2937077	2938243	.	-	0	ID=cds2658;Parent=gene2736;Dbxref=Genbank:WP_002211961.1;Name=WP_002211961.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211961.1;transl_table=11
NC_004088.1	RefSeq	gene	2938298	2938960	.	-	.	ID=gene2737;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=Y_RS13725;old_locus_tag=y2664
NC_004088.1	Protein Homology	CDS	2938298	2938960	.	-	0	ID=cds2659;Parent=gene2737;Dbxref=Genbank:WP_002211960.1;Name=WP_002211960.1;Note=involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer;gbkey=CDS;gene=folE;product=GTP cyclohydrolase 1;protein_id=WP_002211960.1;transl_table=11
NC_004088.1	RefSeq	gene	2939144	2940295	.	-	.	ID=gene2738;Name=Y_RS13730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13730;old_locus_tag=y2665
NC_004088.1	Protein Homology	CDS	2939144	2940295	.	-	0	ID=cds2660;Parent=gene2738;Dbxref=Genbank:WP_002211959.1;Name=WP_002211959.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002211959.1;transl_table=11
NC_004088.1	RefSeq	gene	2940431	2941300	.	+	.	ID=gene2739;Name=Y_RS13735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13735;old_locus_tag=y2666
NC_004088.1	Protein Homology	CDS	2940431	2941300	.	+	0	ID=cds2661;Parent=gene2739;Dbxref=Genbank:WP_002211958.1;Name=WP_002211958.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002211958.1;transl_table=11
NC_004088.1	RefSeq	gene	2941574	2942713	.	+	.	ID=gene2740;Name=Y_RS13740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13740;old_locus_tag=y2667
NC_004088.1	Protein Homology	CDS	2941574	2942713	.	+	0	ID=cds2662;Parent=gene2740;Dbxref=Genbank:WP_002211957.1;Name=WP_002211957.1;Note=catalyzes the formation of S-formylglutathione from S-(hydroxymethyl)glutathione%3B also catalyzes the formation of aldehyde or ketone from alcohols;gbkey=CDS;product=S-(hydroxymethyl)glutathione dehydrogenase;protein_id=WP_002211957.1;transl_table=11
NC_004088.1	RefSeq	gene	2942734	2943576	.	+	.	ID=gene2741;Name=Y_RS13745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13745;old_locus_tag=y2668
NC_004088.1	Protein Homology	CDS	2942734	2943576	.	+	0	ID=cds2663;Parent=gene2741;Dbxref=Genbank:WP_002211956.1;Name=WP_002211956.1;gbkey=CDS;product=S-formylglutathione hydrolase;protein_id=WP_002211956.1;transl_table=11
NC_004088.1	RefSeq	gene	2943845	2944045	.	+	.	ID=gene2742;Name=Y_RS13755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13755
NC_004088.1	Protein Homology	CDS	2943845	2944045	.	+	0	ID=cds2664;Parent=gene2742;Dbxref=Genbank:WP_002211954.1;Name=WP_002211954.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211954.1;transl_table=11
NC_004088.1	RefSeq	gene	2944129	2946489	.	+	.	ID=gene2743;Name=Y_RS13760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13760;old_locus_tag=y2669
NC_004088.1	Protein Homology	CDS	2944129	2946489	.	+	0	ID=cds2665;Parent=gene2743;Dbxref=Genbank:WP_002215886.1;Name=WP_002215886.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215886.1;transl_table=11
NC_004088.1	RefSeq	gene	2946491	2947753	.	+	.	ID=gene2744;Name=Y_RS13765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13765;old_locus_tag=y2670
NC_004088.1	Protein Homology	CDS	2946491	2947753	.	+	0	ID=cds2666;Parent=gene2744;Dbxref=Genbank:WP_002211952.1;Name=WP_002211952.1;gbkey=CDS;product=RND transporter;protein_id=WP_002211952.1;transl_table=11
NC_004088.1	RefSeq	gene	2947755	2948423	.	+	.	ID=gene2745;Name=Y_RS13770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13770;old_locus_tag=y2671
NC_004088.1	Protein Homology	CDS	2947755	2948423	.	+	0	ID=cds2667;Parent=gene2745;Dbxref=Genbank:WP_002211951.1;Name=WP_002211951.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002211951.1;transl_table=11
NC_004088.1	RefSeq	gene	2948433	2949743	.	+	.	ID=gene2746;Name=Y_RS13775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13775;old_locus_tag=y2672
NC_004088.1	Protein Homology	CDS	2948433	2949743	.	+	0	ID=cds2668;Parent=gene2746;Dbxref=Genbank:WP_002211950.1;Name=WP_002211950.1;gbkey=CDS;product=radical SAM/SPASM domain-containing protein;protein_id=WP_002211950.1;transl_table=11
NC_004088.1	RefSeq	gene	2950278	2951552	.	+	.	ID=gene2747;Name=Y_RS13780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13780;old_locus_tag=y2673
NC_004088.1	Protein Homology	CDS	2950278	2951552	.	+	0	ID=cds2669;Parent=gene2747;Dbxref=Genbank:WP_002211949.1;Name=WP_002211949.1;Note=is involved in the formation of active molybdenum cofactor and the chelation of molybdenum;gbkey=CDS;product=molybdopterin biosynthesis protein MoeA;protein_id=WP_002211949.1;transl_table=11
NC_004088.1	RefSeq	gene	2951554	2952324	.	+	.	ID=gene2748;Name=Y_RS13785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13785;old_locus_tag=y2674
NC_004088.1	Protein Homology	CDS	2951554	2952324	.	+	0	ID=cds2670;Parent=gene2748;Dbxref=Genbank:WP_002211948.1;Name=WP_002211948.1;gbkey=CDS;product=molybdopterin-synthase adenylyltransferase;protein_id=WP_002211948.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2952385	2953705	.	+	.	ID=id333;gbkey=repeat_region
NC_004088.1	RefSeq	region	2952389	2953703	.	+	.	ID=id334;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	2952460	2953668	.	+	.	ID=gene2749;Name=Y_RS13790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13790;old_locus_tag=y2675
NC_004088.1	Protein Homology	CDS	2952460	2953668	.	+	0	ID=cds2671;Parent=gene2749;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004088.1	RefSeq	gene	2953712	2954365	.	-	.	ID=gene2750;Name=Y_RS13795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13795;old_locus_tag=y2676
NC_004088.1	Protein Homology	CDS	2953712	2954365	.	-	0	ID=cds2672;Parent=gene2750;Dbxref=Genbank:WP_002211947.1;Name=WP_002211947.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211947.1;transl_table=11
NC_004088.1	RefSeq	gene	2954593	2956164	.	-	.	ID=gene2751;Name=Y_RS13800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13800;old_locus_tag=y2677
NC_004088.1	Protein Homology	CDS	2954593	2956164	.	-	0	ID=cds2673;Parent=gene2751;Dbxref=Genbank:WP_002354043.1;Name=WP_002354043.1;gbkey=CDS;product=heme ABC transporter ATP-binding protein;protein_id=WP_002354043.1;transl_table=11
NC_004088.1	RefSeq	gene	2956871	2957494	.	+	.	ID=gene2752;Name=Y_RS13805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13805;old_locus_tag=y2678
NC_004088.1	Protein Homology	CDS	2956871	2957494	.	+	0	ID=cds2674;Parent=gene2752;Dbxref=Genbank:WP_002211945.1;Name=WP_002211945.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211945.1;transl_table=11
NC_004088.1	RefSeq	gene	2957706	2959073	.	-	.	ID=gene2753;Name=Y_RS13810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13810;old_locus_tag=y2679
NC_004088.1	Protein Homology	CDS	2957706	2959073	.	-	0	ID=cds2675;Parent=gene2753;Dbxref=Genbank:WP_002211944.1;Name=WP_002211944.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211944.1;transl_table=11
NC_004088.1	RefSeq	gene	2959098	2959551	.	-	.	ID=gene2754;Name=Y_RS13815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS13815;pseudo=true
NC_004088.1	Protein Homology	CDS	2959098	2959551	.	-	0	ID=cds2676;Parent=gene2754;exception=annotated by transcript or proteomic data;gbkey=CDS;product=type VI secretion system lysozyme-like protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	2959551	2960132	.	-	.	ID=gene2755;Name=Y_RS13820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13820;old_locus_tag=y2682
NC_004088.1	Protein Homology	CDS	2959551	2960132	.	-	0	ID=cds2677;Parent=gene2755;Dbxref=Genbank:WP_002214552.1;Name=WP_002214552.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002214552.1;transl_table=11
NC_004088.1	RefSeq	gene	2960107	2961192	.	-	.	ID=gene2756;Name=Y_RS13825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13825;old_locus_tag=y2683
NC_004088.1	Protein Homology	CDS	2960107	2961192	.	-	0	ID=cds2678;Parent=gene2756;Dbxref=Genbank:WP_002211941.1;Name=WP_002211941.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211941.1;transl_table=11
NC_004088.1	RefSeq	gene	2961156	2962919	.	-	.	ID=gene2757;Name=Y_RS13830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13830;old_locus_tag=y2684
NC_004088.1	Protein Homology	CDS	2961156	2962919	.	-	0	ID=cds2679;Parent=gene2757;Dbxref=Genbank:WP_002211940.1;Name=WP_002211940.1;gbkey=CDS;product=type VI secretion protein ImpG;protein_id=WP_002211940.1;transl_table=11
NC_004088.1	RefSeq	gene	2963140	2963595	.	-	.	ID=gene2758;Name=Y_RS13835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13835;old_locus_tag=y2685
NC_004088.1	Protein Homology	CDS	2963140	2963595	.	-	0	ID=cds2680;Parent=gene2758;Dbxref=Genbank:WP_002211939.1;Name=WP_002211939.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211939.1;transl_table=11
NC_004088.1	RefSeq	gene	2963610	2964668	.	-	.	ID=gene2759;Name=Y_RS13840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13840;old_locus_tag=y2686
NC_004088.1	Protein Homology	CDS	2963610	2964668	.	-	0	ID=cds2681;Parent=gene2759;Dbxref=Genbank:WP_002211938.1;Name=WP_002211938.1;gbkey=CDS;product=PAAR domain protein;protein_id=WP_002211938.1;transl_table=11
NC_004088.1	RefSeq	gene	2964686	2966287	.	-	.	ID=gene2760;Name=Y_RS13845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13845;old_locus_tag=y2687
NC_004088.1	Protein Homology	CDS	2964686	2966287	.	-	0	ID=cds2682;Parent=gene2760;Dbxref=Genbank:WP_002211937.1;Name=WP_002211937.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211937.1;transl_table=11
NC_004088.1	RefSeq	gene	2966331	2969753	.	-	.	ID=gene2761;Name=Y_RS13850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13850;old_locus_tag=y2688
NC_004088.1	Protein Homology	CDS	2966331	2969753	.	-	0	ID=cds2683;Parent=gene2761;Dbxref=Genbank:WP_002211936.1;Name=WP_002211936.1;gbkey=CDS;product=type VI secretion protein VasK;protein_id=WP_002211936.1;transl_table=11
NC_004088.1	RefSeq	gene	2969750	2970982	.	-	.	ID=gene2762;Name=Y_RS13855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13855;old_locus_tag=y2689
NC_004088.1	Protein Homology	CDS	2969750	2970982	.	-	0	ID=cds2684;Parent=gene2762;Dbxref=Genbank:WP_002211935.1;Name=WP_002211935.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211935.1;transl_table=11
NC_004088.1	RefSeq	gene	2972094	2972414	.	+	.	ID=gene2763;Name=Y_RS13860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13860;old_locus_tag=y2690
NC_004088.1	Protein Homology	CDS	2972094	2972414	.	+	0	ID=cds2685;Parent=gene2763;Dbxref=Genbank:WP_002214561.1;Name=WP_002214561.1;gbkey=CDS;product=transposase;protein_id=WP_002214561.1;transl_table=11
NC_004088.1	RefSeq	gene	2973147	2973617	.	-	.	ID=gene2764;Name=Y_RS13865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13865;old_locus_tag=y2692
NC_004088.1	Protein Homology	CDS	2973147	2973617	.	-	0	ID=cds2686;Parent=gene2764;Dbxref=Genbank:WP_002214564.1;Name=WP_002214564.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214564.1;transl_table=11
NC_004088.1	RefSeq	gene	2973790	2975973	.	-	.	ID=gene2765;Name=Y_RS13870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13870;old_locus_tag=y2694
NC_004088.1	Protein Homology	CDS	2973790	2975973	.	-	0	ID=cds2687;Parent=gene2765;Dbxref=Genbank:WP_041175909.1;Name=WP_041175909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041175909.1;transl_table=11
NC_004088.1	RefSeq	gene	2975989	2976249	.	-	.	ID=gene2766;Name=Y_RS13875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13875;old_locus_tag=y2695
NC_004088.1	Protein Homology	CDS	2975989	2976249	.	-	0	ID=cds2688;Parent=gene2766;Dbxref=Genbank:WP_002211931.1;Name=WP_002211931.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211931.1;transl_table=11
NC_004088.1	RefSeq	gene	2976403	2977176	.	-	.	ID=gene2767;Name=Y_RS13880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13880;old_locus_tag=y2696
NC_004088.1	Protein Homology	CDS	2976403	2977176	.	-	0	ID=cds2689;Parent=gene2767;Dbxref=Genbank:WP_002211930.1;Name=WP_002211930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211930.1;transl_table=11
NC_004088.1	RefSeq	gene	2977173	2979473	.	-	.	ID=gene2768;Name=Y_RS13885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13885;old_locus_tag=y2697
NC_004088.1	Protein Homology	CDS	2977173	2979473	.	-	0	ID=cds2690;Parent=gene2768;Dbxref=Genbank:WP_011055627.1;Name=WP_011055627.1;gbkey=CDS;product=membrane protein;protein_id=WP_011055627.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2978007	2980130	.	+	.	ID=id335;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2979489	2981837	.	-	.	ID=gene2769;Name=Y_RS13890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13890;old_locus_tag=y2698
NC_004088.1	Protein Homology	CDS	2979489	2981837	.	-	0	ID=cds2691;Parent=gene2769;Dbxref=Genbank:WP_002231240.1;Name=WP_002231240.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_002231240.1;transl_table=11
NC_004088.1	RefSeq	gene	2981840	2984479	.	-	.	ID=gene2770;Name=Y_RS13895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13895;old_locus_tag=y2699
NC_004088.1	Protein Homology	CDS	2981840	2984479	.	-	0	ID=cds2692;Parent=gene2770;Dbxref=Genbank:WP_002223447.1;Name=WP_002223447.1;gbkey=CDS;product=ATPase;protein_id=WP_002223447.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	2982797	2984498	.	+	.	ID=id336;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	2984791	2991659	.	+	.	ID=id337;gbkey=repeat_region
NC_004088.1	RefSeq	gene	2984867	2985358	.	-	.	ID=gene2771;Name=Y_RS13900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13900;old_locus_tag=y2700
NC_004088.1	Protein Homology	CDS	2984867	2985358	.	-	0	ID=cds2693;Parent=gene2771;Dbxref=Genbank:WP_002210014.1;Name=WP_002210014.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210014.1;transl_table=11
NC_004088.1	RefSeq	gene	2985362	2987098	.	-	.	ID=gene2772;Name=Y_RS13905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13905;old_locus_tag=y2702
NC_004088.1	Protein Homology	CDS	2985362	2987098	.	-	0	ID=cds2694;Parent=gene2772;Dbxref=Genbank:WP_002228049.1;Name=WP_002228049.1;gbkey=CDS;product=membrane protein;protein_id=WP_002228049.1;transl_table=11
NC_004088.1	RefSeq	gene	2987098	2987784	.	-	.	ID=gene2773;Name=Y_RS13910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13910;old_locus_tag=y2703
NC_004088.1	Protein Homology	CDS	2987098	2987784	.	-	0	ID=cds2695;Parent=gene2773;Dbxref=Genbank:WP_002210015.1;Name=WP_002210015.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210015.1;transl_table=11
NC_004088.1	RefSeq	gene	2987781	2989133	.	-	.	ID=gene2774;Name=Y_RS13915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13915;old_locus_tag=y2704
NC_004088.1	Protein Homology	CDS	2987781	2989133	.	-	0	ID=cds2696;Parent=gene2774;Dbxref=Genbank:WP_002211664.1;Name=WP_002211664.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211664.1;transl_table=11
NC_004088.1	RefSeq	gene	2989145	2990689	.	-	.	ID=gene2775;Name=Y_RS13920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13920;old_locus_tag=y2705
NC_004088.1	Protein Homology	CDS	2989145	2990689	.	-	0	ID=cds2697;Parent=gene2775;Dbxref=Genbank:WP_002215896.1;Name=WP_002215896.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215896.1;transl_table=11
NC_004088.1	RefSeq	gene	2990732	2991232	.	-	.	ID=gene2776;Name=Y_RS13925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13925;old_locus_tag=y2706
NC_004088.1	Protein Homology	CDS	2990732	2991232	.	-	0	ID=cds2698;Parent=gene2776;Dbxref=Genbank:WP_002211662.1;Name=WP_002211662.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211662.1;transl_table=11
NC_004088.1	RefSeq	gene	2991897	2992064	.	-	.	ID=gene2777;Name=Y_RS13930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13930
NC_004088.1	Protein Homology	CDS	2991897	2992064	.	-	0	ID=cds2699;Parent=gene2777;Dbxref=Genbank:WP_002214708.1;Name=WP_002214708.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214708.1;transl_table=11
NC_004088.1	RefSeq	gene	2992221	2993069	.	-	.	ID=gene2778;Name=Y_RS13935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13935;old_locus_tag=y2707
NC_004088.1	Protein Homology	CDS	2992221	2993069	.	-	0	ID=cds2700;Parent=gene2778;Dbxref=Genbank:WP_002213016.1;Name=WP_002213016.1;gbkey=CDS;product=acyltransferase;protein_id=WP_002213016.1;transl_table=11
NC_004088.1	RefSeq	gene	2993168	2993416	.	-	.	ID=gene2779;Name=Y_RS13940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13940
NC_004088.1	Protein Homology	CDS	2993168	2993416	.	-	0	ID=cds2701;Parent=gene2779;Dbxref=Genbank:WP_002213017.1;Name=WP_002213017.1;gbkey=CDS;product=acyl carrier protein;protein_id=WP_002213017.1;transl_table=11
NC_004088.1	RefSeq	gene	2993454	2993786	.	-	.	ID=gene2780;Name=Y_RS13945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13945
NC_004088.1	Protein Homology	CDS	2993454	2993786	.	-	0	ID=cds2702;Parent=gene2780;Dbxref=Genbank:WP_002213021.1;Name=WP_002213021.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213021.1;transl_table=11
NC_004088.1	RefSeq	gene	2993981	2994769	.	-	.	ID=gene2781;Name=Y_RS13950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13950;old_locus_tag=y2709
NC_004088.1	Protein Homology	CDS	2993981	2994769	.	-	0	ID=cds2703;Parent=gene2781;Dbxref=Genbank:WP_002213024.1;Name=WP_002213024.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_002213024.1;transl_table=11
NC_004088.1	RefSeq	gene	2994772	2995524	.	-	.	ID=gene2782;Name=Y_RS13955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13955;old_locus_tag=y2710
NC_004088.1	Protein Homology	CDS	2994772	2995524	.	-	0	ID=cds2704;Parent=gene2782;Dbxref=Genbank:WP_002213025.1;Name=WP_002213025.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_002213025.1;transl_table=11
NC_004088.1	RefSeq	gene	2995526	2996245	.	-	.	ID=gene2783;Name=Y_RS13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13960;old_locus_tag=y2711
NC_004088.1	Protein Homology	CDS	2995526	2996245	.	-	0	ID=cds2705;Parent=gene2783;Dbxref=Genbank:WP_002213026.1;Name=WP_002213026.1;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=WP_002213026.1;transl_table=11
NC_004088.1	RefSeq	gene	2996238	2997476	.	-	.	ID=gene2784;Name=Y_RS13965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13965;old_locus_tag=y2712
NC_004088.1	Protein Homology	CDS	2996238	2997476	.	-	0	ID=cds2706;Parent=gene2784;Dbxref=Genbank:WP_002213028.1;Name=WP_002213028.1;gbkey=CDS;product=hydroxymethylglutaryl-CoA synthase;protein_id=WP_002213028.1;transl_table=11
NC_004088.1	RefSeq	gene	2997492	2998229	.	-	.	ID=gene2785;Name=Y_RS13970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13970;old_locus_tag=y2713
NC_004088.1	Protein Homology	CDS	2997492	2998229	.	-	0	ID=cds2707;Parent=gene2785;Dbxref=Genbank:WP_002213030.1;Name=WP_002213030.1;gbkey=CDS;product=3-ketoacyl-ACP reductase;protein_id=WP_002213030.1;transl_table=11
NC_004088.1	RefSeq	gene	2998231	2999514	.	-	.	ID=gene2786;Name=Y_RS13975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13975;old_locus_tag=y2714
NC_004088.1	Protein Homology	CDS	2998231	2999514	.	-	0	ID=cds2708;Parent=gene2786;Dbxref=Genbank:WP_002213032.1;Name=WP_002213032.1;gbkey=CDS;product=beta-ketoacyl-ACP synthase;protein_id=WP_002213032.1;transl_table=11
NC_004088.1	RefSeq	gene	2999504	3000028	.	-	.	ID=gene2787;Name=Y_RS13980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13980;old_locus_tag=y2715
NC_004088.1	Protein Homology	CDS	2999504	3000028	.	-	0	ID=cds2709;Parent=gene2787;Dbxref=Genbank:WP_002213034.1;Name=WP_002213034.1;gbkey=CDS;product=3-hydroxyacyl-ACP dehydratase;protein_id=WP_002213034.1;transl_table=11
NC_004088.1	RefSeq	gene	3000292	3000510	.	-	.	ID=gene2788;Name=Y_RS13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13985
NC_004088.1	Protein Homology	CDS	3000292	3000510	.	-	0	ID=cds2710;Parent=gene2788;Dbxref=Genbank:WP_002213036.1;Name=WP_002213036.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213036.1;transl_table=11
NC_004088.1	RefSeq	gene	3001241	3001987	.	+	.	ID=gene2789;Name=Y_RS13990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13990;old_locus_tag=y2717
NC_004088.1	Protein Homology	CDS	3001241	3001987	.	+	0	ID=cds2711;Parent=gene2789;Dbxref=Genbank:WP_002213038.1;Name=WP_002213038.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002213038.1;transl_table=11
NC_004088.1	RefSeq	gene	3002141	3004558	.	+	.	ID=gene2790;Name=Y_RS13995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS13995;old_locus_tag=y2718
NC_004088.1	Protein Homology	CDS	3002141	3004558	.	+	0	ID=cds2712;Parent=gene2790;Dbxref=Genbank:WP_002213039.1;Name=WP_002213039.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002213039.1;transl_table=11
NC_004088.1	RefSeq	gene	3004992	3006143	.	-	.	ID=gene2791;Name=Y_RS14000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14000
NC_004088.1	Protein Homology	CDS	3004992	3006143	.	-	0	ID=cds2713;Parent=gene2791;Dbxref=Genbank:WP_002358281.1;Name=WP_002358281.1;gbkey=CDS;product=cytotoxic necrotizing factor 1 domain protein;protein_id=WP_002358281.1;transl_table=11
NC_004088.1	RefSeq	gene	3006158	3006409	.	-	.	ID=gene2792;Name=Y_RS14005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14005
NC_004088.1	Protein Homology	CDS	3006158	3006409	.	-	0	ID=cds2714;Parent=gene2792;Dbxref=Genbank:WP_002354019.1;Name=WP_002354019.1;gbkey=CDS;product=cytotoxic necrotizing factor 1 domain protein;protein_id=WP_002354019.1;transl_table=11
NC_004088.1	RefSeq	gene	3006443	3006799	.	-	.	ID=gene2793;Name=Y_RS14010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14010
NC_004088.1	Protein Homology	CDS	3006443	3006799	.	-	0	ID=cds2715;Parent=gene2793;Dbxref=Genbank:WP_002214713.1;Name=WP_002214713.1;gbkey=CDS;product=cytotoxic necrotizing factor 1 domain protein;protein_id=WP_002214713.1;transl_table=11
NC_004088.1	RefSeq	gene	3007169	3007456	.	-	.	ID=gene2794;Name=Y_RS14015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14015;old_locus_tag=y2720
NC_004088.1	Protein Homology	CDS	3007169	3007456	.	-	0	ID=cds2716;Parent=gene2794;Dbxref=Genbank:WP_002228572.1;Name=WP_002228572.1;gbkey=CDS;product=integrase;protein_id=WP_002228572.1;transl_table=11
NC_004088.1	RefSeq	gene	3007875	3007962	.	-	.	ID=gene2795;Name=Y_RS14020;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS14020;old_locus_tag=yt055
NC_004088.1	tRNAscan-SE	tRNA	3007875	3007962	.	-	.	ID=rna72;Parent=gene2795;anticodon=(pos:complement(3007926..3007928));gbkey=tRNA;product=tRNA-Ser
NC_004088.1	tRNAscan-SE	exon	3007875	3007962	.	-	.	ID=id338;Parent=rna72;anticodon=(pos:complement(3007926..3007928));gbkey=tRNA;product=tRNA-Ser
NC_004088.1	RefSeq	gene	3008203	3008532	.	+	.	ID=gene2796;Name=Y_RS14025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14025;old_locus_tag=y2723
NC_004088.1	Protein Homology	CDS	3008203	3008532	.	+	0	ID=cds2717;Parent=gene2796;Dbxref=Genbank:WP_002213046.1;Name=WP_002213046.1;Note=transfers sulfur from TusBCD complex to MnmA%3B involved in thiouridation of U34 position of some tRNAs;gbkey=CDS;product=sulfurtransferase TusE;protein_id=WP_002213046.1;transl_table=11
NC_004088.1	RefSeq	gene	3008584	3008862	.	-	.	ID=gene2797;Name=Y_RS14030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14030;old_locus_tag=y2724
NC_004088.1	Protein Homology	CDS	3008584	3008862	.	-	0	ID=cds2718;Parent=gene2797;Dbxref=Genbank:WP_002213049.1;Name=WP_002213049.1;Note=catalyzes the hydrolysis of acylphosphate;gbkey=CDS;product=acylphosphatase;protein_id=WP_002213049.1;transl_table=11
NC_004088.1	RefSeq	gene	3008956	3010146	.	+	.	ID=gene2798;Name=Y_RS14035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14035;old_locus_tag=y2725
NC_004088.1	Protein Homology	CDS	3008956	3010146	.	+	0	ID=cds2719;Parent=gene2798;Dbxref=Genbank:WP_002213052.1;Name=WP_002213052.1;Note=SAM-dependent%3Bcatalyzes the methylation of cytosine at position 1962 of the 23S rRNA;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase I;protein_id=WP_002213052.1;transl_table=11
NC_004088.1	RefSeq	gene	3010207	3010524	.	+	.	ID=gene2799;Name=Y_RS14040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14040;old_locus_tag=y2726
NC_004088.1	Protein Homology	CDS	3010207	3010524	.	+	0	ID=cds2720;Parent=gene2799;Dbxref=Genbank:WP_002213054.1;Name=WP_002213054.1;gbkey=CDS;product=heat-shock protein HspQ;protein_id=WP_002213054.1;transl_table=11
NC_004088.1	RefSeq	gene	3010633	3011049	.	-	.	ID=gene2800;Name=Y_RS14045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14045;old_locus_tag=y2727
NC_004088.1	Protein Homology	CDS	3010633	3011049	.	-	0	ID=cds2721;Parent=gene2800;Dbxref=Genbank:WP_002213056.1;Name=WP_002213056.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213056.1;transl_table=11
NC_004088.1	RefSeq	gene	3011365	3012045	.	+	.	ID=gene2801;Name=Y_RS14050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14050;old_locus_tag=y2728
NC_004088.1	Protein Homology	CDS	3011365	3012045	.	+	0	ID=cds2722;Parent=gene2801;Dbxref=Genbank:WP_002213058.1;Name=WP_002213058.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213058.1;transl_table=11
NC_004088.1	RefSeq	gene	3012224	3012688	.	+	.	ID=gene2802;Name=Y_RS14055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14055;old_locus_tag=y2729
NC_004088.1	Protein Homology	CDS	3012224	3012688	.	+	0	ID=cds2723;Parent=gene2802;Dbxref=Genbank:WP_002213060.1;Name=WP_002213060.1;gbkey=CDS;product=methylglyoxal synthase;protein_id=WP_002213060.1;transl_table=11
NC_004088.1	RefSeq	gene	3012749	3014803	.	-	.	ID=gene2803;Name=helD;gbkey=Gene;gene=helD;gene_biotype=protein_coding;locus_tag=Y_RS14060;old_locus_tag=y2730
NC_004088.1	Protein Homology	CDS	3012749	3014803	.	-	0	ID=cds2724;Parent=gene2803;Dbxref=Genbank:WP_002221095.1;Name=WP_002221095.1;Note=catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand;gbkey=CDS;gene=helD;product=DNA helicase IV;protein_id=WP_002221095.1;transl_table=11
NC_004088.1	RefSeq	gene	3014997	3015443	.	+	.	ID=gene2804;Name=Y_RS14065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14065;old_locus_tag=y2731
NC_004088.1	Protein Homology	CDS	3014997	3015443	.	+	0	ID=cds2725;Parent=gene2804;Dbxref=Genbank:WP_002213062.1;Name=WP_002213062.1;gbkey=CDS;product=membrane protein;protein_id=WP_002213062.1;transl_table=11
NC_004088.1	RefSeq	gene	3015473	3017611	.	+	.	ID=gene2805;Name=Y_RS14070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14070;old_locus_tag=y2732
NC_004088.1	Protein Homology	CDS	3015473	3017611	.	+	0	ID=cds2726;Parent=gene2805;Dbxref=Genbank:WP_002213063.1;Name=WP_002213063.1;gbkey=CDS;product=membrane protein;protein_id=WP_002213063.1;transl_table=11
NC_004088.1	RefSeq	gene	3017713	3018348	.	-	.	ID=gene2806;Name=Y_RS14075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14075;old_locus_tag=y2733
NC_004088.1	Protein Homology	CDS	3017713	3018348	.	-	0	ID=cds2727;Parent=gene2806;Dbxref=Genbank:WP_002213064.1;Name=WP_002213064.1;gbkey=CDS;product=DNA transformation protein tfoX;protein_id=WP_002213064.1;transl_table=11
NC_004088.1	RefSeq	gene	3018577	3019083	.	+	.	ID=gene2807;Name=Y_RS14080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14080;old_locus_tag=y2734
NC_004088.1	Protein Homology	CDS	3018577	3019083	.	+	0	ID=cds2728;Parent=gene2807;Dbxref=Genbank:WP_002213065.1;Name=WP_002213065.1;gbkey=CDS;product=cell division inhibitor SulA;protein_id=WP_002213065.1;transl_table=11
NC_004088.1	RefSeq	gene	3019441	3020502	.	+	.	ID=gene2808;Name=Y_RS14085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14085;old_locus_tag=y2735
NC_004088.1	Protein Homology	CDS	3019441	3020502	.	+	0	ID=cds2729;Parent=gene2808;Dbxref=Genbank:WP_002213066.1;Name=WP_002213066.1;Note=OmpA is believed to be a porin%2C involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli%2C and it is known to play a role as a phage receptor%2C a mediator of F-factor dependent conjugation%2C and in maintaining the structural shape of the outer membrane%3B 3a%3B II*%3B G%3B d;gbkey=CDS;product=outer membrane protein A;protein_id=WP_002213066.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3020540	3021262	.	+	.	ID=id339;gbkey=repeat_region
NC_004088.1	RefSeq	region	3020547	3021256	.	+	.	ID=id340;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3020547	3020702	.	+	.	ID=gene2809;Name=Y_RS14090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14090
NC_004088.1	Protein Homology	CDS	3020547	3020702	.	+	0	ID=cds2730;Parent=gene2809;Dbxref=Genbank:WP_002213757.1;Name=WP_002213757.1;gbkey=CDS;product=invasin;protein_id=WP_002213757.1;transl_table=11
NC_004088.1	RefSeq	gene	3020692	3021150	.	+	.	ID=gene2810;Name=Y_RS14095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14095;old_locus_tag=y2736
NC_004088.1	Protein Homology	CDS	3020692	3021150	.	+	0	ID=cds2731;Parent=gene2810;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	3021319	3021774	.	-	.	ID=gene2811;Name=Y_RS14100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14100;old_locus_tag=y2737
NC_004088.1	Protein Homology	CDS	3021319	3021774	.	-	0	ID=cds2732;Parent=gene2811;Dbxref=Genbank:WP_002226586.1;Name=WP_002226586.1;gbkey=CDS;product=macrodomain Ter protein;protein_id=WP_002226586.1;transl_table=11
NC_004088.1	RefSeq	gene	3021985	3023736	.	+	.	ID=gene2812;Name=Y_RS14105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14105;old_locus_tag=y2739
NC_004088.1	Protein Homology	CDS	3021985	3023736	.	+	0	ID=cds2733;Parent=gene2812;Dbxref=Genbank:WP_002224683.1;Name=WP_002224683.1;gbkey=CDS;product=ATP-dependent protease;protein_id=WP_002224683.1;transl_table=11
NC_004088.1	RefSeq	gene	3023805	3024323	.	+	.	ID=gene2813;Name=Y_RS14110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14110;old_locus_tag=y2740
NC_004088.1	Protein Homology	CDS	3023805	3024323	.	+	0	ID=cds2734;Parent=gene2813;Dbxref=Genbank:WP_002220006.1;Name=WP_002220006.1;Note=catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2%2C3-decenoyl-ACP or 3%2C4-decenoyl-ACP;gbkey=CDS;product=3-hydroxydecanoyl-ACP dehydratase;protein_id=WP_002220006.1;transl_table=11
NC_004088.1	RefSeq	gene	3024589	3024777	.	-	.	ID=gene2814;Name=Y_RS14115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14115
NC_004088.1	Protein Homology	CDS	3024589	3024777	.	-	0	ID=cds2735;Parent=gene2814;Dbxref=Genbank:WP_002211286.1;Name=WP_002211286.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211286.1;transl_table=11
NC_004088.1	RefSeq	gene	3025023	3025397	.	+	.	ID=gene2815;Name=Y_RS14120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14120;old_locus_tag=y2741
NC_004088.1	Protein Homology	CDS	3025023	3025397	.	+	0	ID=cds2736;Parent=gene2815;Dbxref=Genbank:WP_002211287.1;Name=WP_002211287.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211287.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3025321	3027287	.	+	.	ID=id341;gbkey=repeat_region
NC_004088.1	RefSeq	region	3025325	3027278	.	+	.	ID=id342;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3025411	3026433	.	+	.	ID=gene2816;Name=Y_RS14125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14125;old_locus_tag=y2742
NC_004088.1	Protein Homology	CDS	3025411	3026433	.	+	0	ID=cds2737;Parent=gene2816;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	3026433	3027212	.	+	.	ID=gene2817;Name=Y_RS14130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14130;old_locus_tag=y2743
NC_004088.1	Protein Homology	CDS	3026433	3027212	.	+	0	ID=cds2738;Parent=gene2817;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	3027282	3028256	.	+	.	ID=gene2818;Name=Y_RS14135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS14135;old_locus_tag=y2744;partial=true;pseudo=true;start_range=.,3027282
NC_004088.1	Protein Homology	CDS	3027282	3028256	.	+	0	ID=cds2739;Parent=gene2818;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=3-oxoacyl-ACP synthase;pseudo=true;start_range=.,3027282;transl_table=11
NC_004088.1	RefSeq	repeat_region	3028261	3028981	.	+	.	ID=id343;gbkey=repeat_region
NC_004088.1	RefSeq	region	3028267	3028976	.	-	.	ID=id344;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3028373	3028831	.	-	.	ID=gene2819;Name=Y_RS14140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14140;old_locus_tag=y2745
NC_004088.1	Protein Homology	CDS	3028373	3028831	.	-	0	ID=cds2740;Parent=gene2819;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	3028821	3028976	.	-	.	ID=gene2820;Name=Y_RS14145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14145
NC_004088.1	Protein Homology	CDS	3028821	3028976	.	-	0	ID=cds2741;Parent=gene2820;Dbxref=Genbank:WP_002213757.1;Name=WP_002213757.1;gbkey=CDS;product=invasin;protein_id=WP_002213757.1;transl_table=11
NC_004088.1	RefSeq	gene	3029029	3029196	.	-	.	ID=gene2821;Name=Y_RS14150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14150
NC_004088.1	Protein Homology	CDS	3029029	3029196	.	-	0	ID=cds2742;Parent=gene2821;Dbxref=Genbank:WP_002228015.1;Name=WP_002228015.1;gbkey=CDS;product=ribosome modulation factor;protein_id=WP_002228015.1;transl_table=11
NC_004088.1	RefSeq	gene	3029277	3029417	.	-	.	ID=gene2822;Name=Y_RS14155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14155
NC_004088.1	Protein Homology	CDS	3029277	3029417	.	-	0	ID=cds2743;Parent=gene2822;Dbxref=Genbank:WP_002217596.1;Name=WP_002217596.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217596.1;transl_table=11
NC_004088.1	RefSeq	gene	3029466	3030044	.	-	.	ID=gene2823;Name=Y_RS14160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14160;old_locus_tag=y2746
NC_004088.1	Protein Homology	CDS	3029466	3030044	.	-	0	ID=cds2744;Parent=gene2823;Dbxref=Genbank:WP_002211289.1;Name=WP_002211289.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002211289.1;transl_table=11
NC_004088.1	RefSeq	gene	3030041	3031693	.	-	.	ID=gene2824;Name=Y_RS14165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14165;old_locus_tag=y2747
NC_004088.1	Protein Homology	CDS	3030041	3031693	.	-	0	ID=cds2745;Parent=gene2824;Dbxref=Genbank:WP_002211290.1;Name=WP_002211290.1;gbkey=CDS;product=paraquat-inducible protein B;protein_id=WP_002211290.1;transl_table=11
NC_004088.1	RefSeq	gene	3031680	3032897	.	-	.	ID=gene2825;Name=Y_RS14170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14170;old_locus_tag=y2749
NC_004088.1	Protein Homology	CDS	3031680	3032897	.	-	0	ID=cds2746;Parent=gene2825;Dbxref=Genbank:WP_002354008.1;Name=WP_002354008.1;gbkey=CDS;product=paraquat-inducible protein A;protein_id=WP_002354008.1;transl_table=11
NC_004088.1	RefSeq	gene	3033095	3035008	.	-	.	ID=gene2826;Name=Y_RS14175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14175;old_locus_tag=y2750
NC_004088.1	Protein Homology	CDS	3033095	3035008	.	-	0	ID=cds2747;Parent=gene2826;Dbxref=Genbank:WP_002211292.1;Name=WP_002211292.1;Note=Uup%3B in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity%3B mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002211292.1;transl_table=11
NC_004088.1	RefSeq	gene	3035014	3037134	.	-	.	ID=gene2827;Name=rlmL;gbkey=Gene;gene=rlmL;gene_biotype=protein_coding;locus_tag=Y_RS14180;old_locus_tag=y2751
NC_004088.1	Protein Homology	CDS	3035014	3037134	.	-	0	ID=cds2748;Parent=gene2827;Dbxref=Genbank:WP_002211293.1;Name=WP_002211293.1;Note=catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA;gbkey=CDS;gene=rlmL;product=ribosomal RNA large subunit methyltransferase K/L;protein_id=WP_002211293.1;transl_table=11
NC_004088.1	RefSeq	gene	3037237	3038346	.	+	.	ID=gene2828;Name=Y_RS14185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14185;old_locus_tag=y2752
NC_004088.1	Protein Homology	CDS	3037237	3038346	.	+	0	ID=cds2749;Parent=gene2828;Dbxref=Genbank:WP_002363919.1;Name=WP_002363919.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002363919.1;transl_table=11
NC_004088.1	RefSeq	gene	3038372	3038923	.	-	.	ID=gene2829;Name=Y_RS14190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14190;old_locus_tag=y2753
NC_004088.1	Protein Homology	CDS	3038372	3038923	.	-	0	ID=cds2750;Parent=gene2829;Dbxref=Genbank:WP_002211295.1;Name=WP_002211295.1;gbkey=CDS;product=cell division protein ZapC;protein_id=WP_002211295.1;transl_table=11
NC_004088.1	RefSeq	gene	3039106	3040116	.	-	.	ID=gene2830;Name=Y_RS14195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14195;old_locus_tag=y2755
NC_004088.1	Protein Homology	CDS	3039106	3040116	.	-	0	ID=cds2751;Parent=gene2830;Dbxref=Genbank:WP_002211296.1;Name=WP_002211296.1;Note=catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors;gbkey=CDS;product=dihydroorotate dehydrogenase;protein_id=WP_002211296.1;transl_table=11
NC_004088.1	RefSeq	gene	3040770	3043385	.	-	.	ID=gene2831;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=Y_RS14200;old_locus_tag=y2756
NC_004088.1	Protein Homology	CDS	3040770	3043385	.	-	0	ID=cds2752;Parent=gene2831;Dbxref=Genbank:WP_002220013.1;Name=WP_002220013.1;gbkey=CDS;gene=pepN;product=aminopeptidase;protein_id=WP_002220013.1;transl_table=11
NC_004088.1	RefSeq	gene	3044101	3045306	.	+	.	ID=gene2832;Name=Y_RS14205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14205;old_locus_tag=y2757
NC_004088.1	Protein Homology	CDS	3044101	3045306	.	+	0	ID=cds2753;Parent=gene2832;Dbxref=Genbank:WP_002228013.1;Name=WP_002228013.1;Note=catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate;gbkey=CDS;product=nicotinate phosphoribosyltransferase;protein_id=WP_002228013.1;transl_table=11
NC_004088.1	RefSeq	gene	3045805	3047205	.	+	.	ID=gene2833;Name=Y_RS14210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14210;old_locus_tag=y2758
NC_004088.1	Protein Homology	CDS	3045805	3047205	.	+	0	ID=cds2754;Parent=gene2833;Dbxref=Genbank:WP_002211301.1;Name=WP_002211301.1;gbkey=CDS;product=asparagine--tRNA ligase;protein_id=WP_002211301.1;transl_table=11
NC_004088.1	RefSeq	gene	3047503	3048585	.	+	.	ID=gene2834;Name=Y_RS14215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14215;old_locus_tag=y2759
NC_004088.1	Protein Homology	CDS	3047503	3048585	.	+	0	ID=cds2755;Parent=gene2834;Dbxref=Genbank:WP_002211302.1;Name=WP_002211302.1;Note=allows for ions and hydrophilic solutes to cross the outer membrane;gbkey=CDS;product=porin;protein_id=WP_002211302.1;transl_table=11
NC_004088.1	RefSeq	gene	3048842	3050032	.	+	.	ID=gene2835;Name=Y_RS14220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14220;old_locus_tag=y2760
NC_004088.1	Protein Homology	CDS	3048842	3050032	.	+	0	ID=cds2756;Parent=gene2835;Dbxref=Genbank:WP_002211303.1;Name=WP_002211303.1;gbkey=CDS;product=aromatic amino acid aminotransferase;protein_id=WP_002211303.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3050086	3050257	.	+	.	ID=id345;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3050456	3051103	.	-	.	ID=gene2836;Name=Y_RS14225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14225;old_locus_tag=y2761
NC_004088.1	Protein Homology	CDS	3050456	3051103	.	-	0	ID=cds2757;Parent=gene2836;Dbxref=Genbank:WP_002211304.1;Name=WP_002211304.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211304.1;transl_table=11
NC_004088.1	RefSeq	gene	3051164	3051712	.	-	.	ID=gene2837;Name=Y_RS14230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14230;old_locus_tag=y2762
NC_004088.1	Protein Homology	CDS	3051164	3051712	.	-	0	ID=cds2758;Parent=gene2837;Dbxref=Genbank:WP_002211305.1;Name=WP_002211305.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211305.1;transl_table=11
NC_004088.1	RefSeq	gene	3051936	3053792	.	-	.	ID=gene2838;Name=Y_RS14235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14235;old_locus_tag=y2763
NC_004088.1	Protein Homology	CDS	3051936	3053792	.	-	0	ID=cds2759;Parent=gene2838;Dbxref=Genbank:WP_002217987.1;Name=WP_002217987.1;gbkey=CDS;product=murein transpeptidase;protein_id=WP_002217987.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3053964	3054685	.	+	.	ID=id346;gbkey=repeat_region
NC_004088.1	RefSeq	region	3053970	3054679	.	-	.	ID=id347;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3054076	3054534	.	-	.	ID=gene2839;Name=Y_RS14240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14240;old_locus_tag=y2764
NC_004088.1	Protein Homology	CDS	3054076	3054534	.	-	0	ID=cds2760;Parent=gene2839;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	3054524	3054706	.	-	.	ID=gene2840;Name=Y_RS14245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14245
NC_004088.1	Protein Homology	CDS	3054524	3054706	.	-	0	ID=cds2761;Parent=gene2840;Dbxref=Genbank:WP_002217988.1;Name=WP_002217988.1;gbkey=CDS;product=invasin;protein_id=WP_002217988.1;transl_table=11
NC_004088.1	RefSeq	gene	3054750	3059207	.	-	.	ID=gene2841;Name=mukB;gbkey=Gene;gene=mukB;gene_biotype=protein_coding;locus_tag=Y_RS14250;old_locus_tag=y2765
NC_004088.1	Protein Homology	CDS	3054750	3059207	.	-	0	ID=cds2762;Parent=gene2841;Dbxref=Genbank:WP_002211308.1;Name=WP_002211308.1;Note=SMC (structural maintenance of chromosomes) family of proteins%3B involved in chromosome condensatin and partitioning%3B forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ%3B mutations result in cell division defects;gbkey=CDS;gene=mukB;product=chromosome partition protein MukB;protein_id=WP_002211308.1;transl_table=11
NC_004088.1	RefSeq	gene	3059204	3059932	.	-	.	ID=gene2842;Name=Y_RS14255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14255;old_locus_tag=y2766
NC_004088.1	Protein Homology	CDS	3059204	3059932	.	-	0	ID=cds2763;Parent=gene2842;Dbxref=Genbank:WP_002211309.1;Name=WP_002211309.1;Note=acts with MukB and MukF to condense the chromosome and allow for segregation during cell division;gbkey=CDS;product=condesin subunit E;protein_id=WP_002211309.1;transl_table=11
NC_004088.1	RefSeq	gene	3059913	3061235	.	-	.	ID=gene2843;Name=Y_RS14260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14260;old_locus_tag=y2767
NC_004088.1	Protein Homology	CDS	3059913	3061235	.	-	0	ID=cds2764;Parent=gene2843;Dbxref=Genbank:WP_002211310.1;Name=WP_002211310.1;Note=acts with MukB and MukE to condense the chromosome and allow for segregation during cell division;gbkey=CDS;product=chromosome partition protein MukF;protein_id=WP_002211310.1;transl_table=11
NC_004088.1	RefSeq	gene	3061232	3062017	.	-	.	ID=gene2844;Name=Y_RS14265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14265;old_locus_tag=y2768
NC_004088.1	Protein Homology	CDS	3061232	3062017	.	-	0	ID=cds2765;Parent=gene2844;Dbxref=Genbank:WP_002211311.1;Name=WP_002211311.1;gbkey=CDS;product=S-adenosyl-L-methionine-dependent methyltransferase;protein_id=WP_002211311.1;transl_table=11
NC_004088.1	RefSeq	gene	3062262	3062414	.	+	.	ID=gene2845;Name=Y_RS14270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14270;old_locus_tag=y2769
NC_004088.1	Protein Homology	CDS	3062262	3062414	.	+	0	ID=cds2766;Parent=gene2845;Dbxref=Genbank:WP_002216252.1;Name=WP_002216252.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216252.1;transl_table=11
NC_004088.1	RefSeq	gene	3062790	3063683	.	-	.	ID=gene2846;Name=Y_RS14275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14275;old_locus_tag=y2770
NC_004088.1	Protein Homology	CDS	3062790	3063683	.	-	0	ID=cds2767;Parent=gene2846;Dbxref=Genbank:WP_002211313.1;Name=WP_002211313.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211313.1;transl_table=11
NC_004088.1	RefSeq	gene	3064046	3064798	.	-	.	ID=gene2847;Name=Y_RS14280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14280;old_locus_tag=y2772
NC_004088.1	Protein Homology	CDS	3064046	3064798	.	-	0	ID=cds2768;Parent=gene2847;Dbxref=Genbank:WP_002211314.1;Name=WP_002211314.1;Note=CMP-2-keto-3-deoxyoctulosonic acid synthetase%3B catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS;gbkey=CDS;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_002211314.1;transl_table=11
NC_004088.1	RefSeq	gene	3064795	3064977	.	-	.	ID=gene2848;Name=Y_RS14285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14285
NC_004088.1	Protein Homology	CDS	3064795	3064977	.	-	0	ID=cds2769;Parent=gene2848;Dbxref=Genbank:WP_002211315.1;Name=WP_002211315.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211315.1;transl_table=11
NC_004088.1	RefSeq	gene	3065525	3065734	.	-	.	ID=gene2849;Name=Y_RS14290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14290;old_locus_tag=y2774
NC_004088.1	Protein Homology	CDS	3065525	3065734	.	-	0	ID=cds2770;Parent=gene2849;Dbxref=Genbank:WP_002211317.1;Name=WP_002211317.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_002211317.1;transl_table=11
NC_004088.1	RefSeq	gene	3066461	3067897	.	+	.	ID=gene2850;Name=Y_RS14295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14295;old_locus_tag=y2775
NC_004088.1	Protein Homology	CDS	3066461	3067897	.	+	0	ID=cds2771;Parent=gene2850;Dbxref=Genbank:WP_002216263.1;Name=WP_002216263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216263.1;transl_table=11
NC_004088.1	RefSeq	gene	3067905	3068891	.	-	.	ID=gene2851;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=Y_RS14300;old_locus_tag=y2776
NC_004088.1	Protein Homology	CDS	3067905	3068891	.	-	0	ID=cds2772;Parent=gene2851;Dbxref=Genbank:WP_002211319.1;Name=WP_002211319.1;Note=transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1%2C4'-bis-phosphate;gbkey=CDS;gene=lpxK;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_002211319.1;transl_table=11
NC_004088.1	RefSeq	gene	3068888	3070636	.	-	.	ID=gene2852;Name=Y_RS14305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14305;old_locus_tag=y2777
NC_004088.1	Protein Homology	CDS	3068888	3070636	.	-	0	ID=cds2773;Parent=gene2852;Dbxref=Genbank:WP_002211320.1;Name=WP_002211320.1;Note=involved in the transport of lipid A across the inner membrane;gbkey=CDS;product=lipid A export ATP-binding/permease MsbA;protein_id=WP_002211320.1;transl_table=11
NC_004088.1	RefSeq	gene	3070672	3072963	.	-	.	ID=gene2853;Name=Y_RS14310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14310;old_locus_tag=y2778
NC_004088.1	Protein Homology	CDS	3070672	3072963	.	-	0	ID=cds2774;Parent=gene2853;Dbxref=Genbank:WP_002211321.1;Name=WP_002211321.1;gbkey=CDS;product=competence protein ComEC;protein_id=WP_002211321.1;transl_table=11
NC_004088.1	RefSeq	gene	3073510	3073794	.	-	.	ID=gene2854;Name=ihfB;gbkey=Gene;gene=ihfB;gene_biotype=protein_coding;locus_tag=Y_RS14315;old_locus_tag=y2779
NC_004088.1	Protein Homology	CDS	3073510	3073794	.	-	0	ID=cds2775;Parent=gene2854;Dbxref=Genbank:WP_002211322.1;Name=WP_002211322.1;Note=This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control;gbkey=CDS;gene=ihfB;product=integration host factor subunit beta;protein_id=WP_002211322.1;transl_table=11
NC_004088.1	RefSeq	gene	3073855	3075528	.	-	.	ID=gene2855;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=Y_RS14320;old_locus_tag=y2781
NC_004088.1	Protein Homology	CDS	3073855	3075528	.	-	0	ID=cds2776;Parent=gene2855;Dbxref=Genbank:WP_002211323.1;Name=WP_002211323.1;Note=in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins;gbkey=CDS;gene=rpsA;product=30S ribosomal protein S1;protein_id=WP_002211323.1;transl_table=11
NC_004088.1	RefSeq	gene	3075702	3076394	.	-	.	ID=gene2856;Name=Y_RS14325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14325;old_locus_tag=y2782
NC_004088.1	Protein Homology	CDS	3075702	3076394	.	-	0	ID=cds2777;Parent=gene2856;Dbxref=Genbank:WP_002211324.1;Name=WP_002211324.1;gbkey=CDS;product=cytidylate kinase;protein_id=WP_002211324.1;transl_table=11
NC_004088.1	RefSeq	gene	3076707	3077993	.	-	.	ID=gene2857;Name=Y_RS14330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14330;old_locus_tag=y2783
NC_004088.1	Protein Homology	CDS	3076707	3077993	.	-	0	ID=cds2778;Parent=gene2857;Dbxref=Genbank:WP_002211325.1;Name=WP_002211325.1;gbkey=CDS;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_002211325.1;transl_table=11
NC_004088.1	RefSeq	gene	3078156	3079241	.	-	.	ID=gene2858;Name=Y_RS14335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14335;old_locus_tag=y2784
NC_004088.1	Protein Homology	CDS	3078156	3079241	.	-	0	ID=cds2779;Parent=gene2858;Dbxref=Genbank:WP_002211326.1;Name=WP_002211326.1;Note=catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine;gbkey=CDS;product=phosphoserine aminotransferase;protein_id=WP_002211326.1;transl_table=11
NC_004088.1	RefSeq	gene	3079608	3081455	.	-	.	ID=gene2859;Name=Y_RS14340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14340;old_locus_tag=y2785
NC_004088.1	Protein Homology	CDS	3079608	3081455	.	-	0	ID=cds2780;Parent=gene2859;Dbxref=Genbank:WP_002211327.1;Name=WP_002211327.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211327.1;transl_table=11
NC_004088.1	RefSeq	gene	3081476	3082570	.	-	.	ID=gene2860;Name=Y_RS14345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14345;old_locus_tag=y2786
NC_004088.1	Protein Homology	CDS	3081476	3082570	.	-	0	ID=cds2781;Parent=gene2860;Dbxref=Genbank:WP_002211328.1;Name=WP_002211328.1;gbkey=CDS;product=hemagglutinin;protein_id=WP_002211328.1;transl_table=11
NC_004088.1	RefSeq	gene	3082839	3083876	.	-	.	ID=gene2861;Name=ansB;gbkey=Gene;gene=ansB;gene_biotype=protein_coding;locus_tag=Y_RS14350;old_locus_tag=y2787
NC_004088.1	Protein Homology	CDS	3082839	3083876	.	-	0	ID=cds2782;Parent=gene2861;Dbxref=Genbank:WP_002211329.1;Name=WP_002211329.1;Note=catalyzes the formation of aspartate from asparagine%2C periplasmic%3B regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis;gbkey=CDS;gene=ansB;product=L-asparaginase;protein_id=WP_002211329.1;transl_table=11
NC_004088.1	RefSeq	gene	3084025	3085791	.	+	.	ID=gene2862;Name=Y_RS14355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14355;old_locus_tag=y2788
NC_004088.1	Protein Homology	CDS	3084025	3085791	.	+	0	ID=cds2783;Parent=gene2862;Dbxref=Genbank:WP_002211330.1;Name=WP_002211330.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211330.1;transl_table=11
NC_004088.1	RefSeq	gene	3086489	3087346	.	+	.	ID=gene2863;Name=Y_RS14360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14360;old_locus_tag=y2789
NC_004088.1	Protein Homology	CDS	3086489	3087346	.	+	0	ID=cds2784;Parent=gene2863;Dbxref=Genbank:WP_002211331.1;Name=WP_002211331.1;gbkey=CDS;product=formate transporter FocA;protein_id=WP_002211331.1;transl_table=11
NC_004088.1	RefSeq	gene	3087402	3089684	.	+	.	ID=gene2864;Name=Y_RS14365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14365;old_locus_tag=y2790
NC_004088.1	Protein Homology	CDS	3087402	3089684	.	+	0	ID=cds2785;Parent=gene2864;Dbxref=Genbank:WP_002211332.1;Name=WP_002211332.1;Note=formate acetyltransferase%3B catalyzes the formation of formate and acetyl-CoA from pyruvate;gbkey=CDS;product=keto-acid formate acetyltransferase;protein_id=WP_002211332.1;transl_table=11
NC_004088.1	RefSeq	gene	3089802	3090476	.	-	.	ID=gene2865;Name=Y_RS14370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14370;old_locus_tag=y2791
NC_004088.1	Protein Homology	CDS	3089802	3090476	.	-	0	ID=cds2786;Parent=gene2865;Dbxref=Genbank:WP_002211333.1;Name=WP_002211333.1;gbkey=CDS;product=LPS glycosyltransferase;protein_id=WP_002211333.1;transl_table=11
NC_004088.1	RefSeq	gene	3091463	3092197	.	+	.	ID=gene2866;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=Y_RS14375;old_locus_tag=y2792
NC_004088.1	Protein Homology	CDS	3091463	3092197	.	+	0	ID=cds2787;Parent=gene2866;Dbxref=Genbank:WP_002211334.1;Name=WP_002211334.1;Note=activates pyruvate formate-lyase 1 under anaerobic conditions;gbkey=CDS;gene=pflA;product=pyruvate formate lyase-activating protein;protein_id=WP_002211334.1;transl_table=11
NC_004088.1	RefSeq	gene	3092351	3092959	.	-	.	ID=gene2867;Name=Y_RS14380;end_range=3092959,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS14380;partial=true;pseudo=true
NC_004088.1	Protein Homology	CDS	3092351	3092959	.	-	0	ID=cds2788;Parent=gene2867;end_range=3092959,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=MFS transporter;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	3092954	3094911	.	+	.	ID=id348;gbkey=repeat_region
NC_004088.1	RefSeq	region	3092957	3094910	.	+	.	ID=id349;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3093043	3094065	.	+	.	ID=gene2868;Name=Y_RS14385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14385;old_locus_tag=y2793
NC_004088.1	Protein Homology	CDS	3093043	3094065	.	+	0	ID=cds2789;Parent=gene2868;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	3094065	3094844	.	+	.	ID=gene2869;Name=Y_RS14390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14390;old_locus_tag=y2794
NC_004088.1	Protein Homology	CDS	3094065	3094844	.	+	0	ID=cds2790;Parent=gene2869;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	3094895	3095458	.	-	.	ID=gene2870;Name=Y_RS14395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14395
NC_004088.1	Protein Homology	CDS	3094895	3095458	.	-	0	ID=cds2791;Parent=gene2870;Dbxref=Genbank:WP_002223476.1;Name=WP_002223476.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002223476.1;transl_table=11
NC_004088.1	RefSeq	gene	3095713	3097005	.	-	.	ID=gene2871;Name=Y_RS14400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14400;old_locus_tag=y2796
NC_004088.1	Protein Homology	CDS	3095713	3097005	.	-	0	ID=cds2792;Parent=gene2871;Dbxref=Genbank:WP_002211336.1;Name=WP_002211336.1;gbkey=CDS;product=serine--tRNA ligase;protein_id=WP_002211336.1;transl_table=11
NC_004088.1	RefSeq	gene	3097247	3098590	.	-	.	ID=gene2872;Name=Y_RS14405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14405;old_locus_tag=y2797
NC_004088.1	Protein Homology	CDS	3097247	3098590	.	-	0	ID=cds2793;Parent=gene2872;Dbxref=Genbank:WP_002228009.1;Name=WP_002228009.1;gbkey=CDS;product=recombinase RarA;protein_id=WP_002228009.1;transl_table=11
NC_004088.1	RefSeq	gene	3098601	3099209	.	-	.	ID=gene2873;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=Y_RS14410;old_locus_tag=y2798
NC_004088.1	Protein Homology	CDS	3098601	3099209	.	-	0	ID=cds2794;Parent=gene2873;Dbxref=Genbank:WP_002211338.1;Name=WP_002211338.1;Note=participates with LolB in the incorporation of lipoprotein into the outer membrane;gbkey=CDS;gene=lolA;product=outer membrane lipoprotein carrier protein LolA;protein_id=WP_002211338.1;transl_table=11
NC_004088.1	RefSeq	gene	3099402	3103319	.	-	.	ID=gene2874;Name=Y_RS14415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14415;old_locus_tag=y2800
NC_004088.1	Protein Homology	CDS	3099402	3103319	.	-	0	ID=cds2795;Parent=gene2874;Dbxref=Genbank:WP_002211339.1;Name=WP_002211339.1;gbkey=CDS;product=cell division protein FtsK;protein_id=WP_002211339.1;transl_table=11
NC_004088.1	RefSeq	gene	3103442	3103936	.	-	.	ID=gene2875;Name=Y_RS14420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14420;old_locus_tag=y2801
NC_004088.1	Protein Homology	CDS	3103442	3103936	.	-	0	ID=cds2796;Parent=gene2875;Dbxref=Genbank:WP_002211340.1;Name=WP_002211340.1;Note=mediates a global response to leucine%3B acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_002211340.1;transl_table=11
NC_004088.1	RefSeq	gene	3104703	3105665	.	+	.	ID=gene2876;Name=Y_RS14425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14425;old_locus_tag=y2802
NC_004088.1	Protein Homology	CDS	3104703	3105665	.	+	0	ID=cds2797;Parent=gene2876;Dbxref=Genbank:WP_002211341.1;Name=WP_002211341.1;Note=catalyzes the transfer of electrons from NADPH to thioredoxin%3B FAD/NAD(P) binding;gbkey=CDS;product=thioredoxin reductase;protein_id=WP_002211341.1;transl_table=11
NC_004088.1	RefSeq	gene	3105770	3105907	.	-	.	ID=gene2877;Name=Y_RS14430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14430
NC_004088.1	Protein Homology	CDS	3105770	3105907	.	-	0	ID=cds2798;Parent=gene2877;Dbxref=Genbank:WP_002211342.1;Name=WP_002211342.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211342.1;transl_table=11
NC_004088.1	RefSeq	gene	3106124	3107890	.	+	.	ID=gene2878;Name=Y_RS14435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14435;old_locus_tag=y2803
NC_004088.1	Protein Homology	CDS	3106124	3107890	.	+	0	ID=cds2799;Parent=gene2878;Dbxref=Genbank:WP_002217690.1;Name=WP_002217690.1;Note=in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c;gbkey=CDS;product=glutathione ABC transporter ATP-binding protein;protein_id=WP_002217690.1;transl_table=11
NC_004088.1	RefSeq	gene	3107893	3109617	.	+	.	ID=gene2879;Name=Y_RS14440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14440;old_locus_tag=y2805
NC_004088.1	Protein Homology	CDS	3107893	3109617	.	+	0	ID=cds2800;Parent=gene2879;Dbxref=Genbank:WP_002211344.1;Name=WP_002211344.1;Note=in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c;gbkey=CDS;product=glutathione ABC transporter ATP-binding protein;protein_id=WP_002211344.1;transl_table=11
NC_004088.1	RefSeq	gene	3109836	3110546	.	+	.	ID=gene2880;Name=Y_RS14445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14445;old_locus_tag=y2806
NC_004088.1	Protein Homology	CDS	3109836	3110546	.	+	0	ID=cds2801;Parent=gene2880;Dbxref=Genbank:WP_002211346.1;Name=WP_002211346.1;gbkey=CDS;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_002211346.1;transl_table=11
NC_004088.1	RefSeq	gene	3110712	3110930	.	+	.	ID=gene2881;Name=Y_RS14450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14450;old_locus_tag=y2807
NC_004088.1	Protein Homology	CDS	3110712	3110930	.	+	0	ID=cds2802;Parent=gene2881;Dbxref=Genbank:WP_002211347.1;Name=WP_002211347.1;gbkey=CDS;product=translation initiation factor IF-1;protein_id=WP_002211347.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3111191	3111913	.	+	.	ID=id350;gbkey=repeat_region
NC_004088.1	RefSeq	region	3111196	3111905	.	-	.	ID=id351;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3111302	3111760	.	-	.	ID=gene2882;Name=Y_RS14455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14455;old_locus_tag=y2808
NC_004088.1	Protein Homology	CDS	3111302	3111760	.	-	0	ID=cds2803;Parent=gene2882;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	3112053	3114329	.	-	.	ID=gene2883;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=Y_RS14460;old_locus_tag=y2809
NC_004088.1	Protein Homology	CDS	3112053	3114329	.	-	0	ID=cds2804;Parent=gene2883;Dbxref=Genbank:WP_002211348.1;Name=WP_002211348.1;Note=ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease%3B directs protease to specific substrates;gbkey=CDS;gene=clpA;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_002211348.1;transl_table=11
NC_004088.1	RefSeq	gene	3114355	3114675	.	-	.	ID=gene2884;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=Y_RS14465;old_locus_tag=y2810
NC_004088.1	Protein Homology	CDS	3114355	3114675	.	-	0	ID=cds2805;Parent=gene2884;Dbxref=Genbank:WP_002211349.1;Name=WP_002211349.1;Note=involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation%3B binds to the N-terminal domain of the chaperone ClpA;gbkey=CDS;gene=clpS;product=ATP-dependent Clp protease adapter protein ClpS;protein_id=WP_002211349.1;transl_table=11
NC_004088.1	RefSeq	gene	3115036	3115299	.	+	.	ID=gene2885;Name=Y_RS14470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14470
NC_004088.1	Protein Homology	CDS	3115036	3115299	.	+	0	ID=cds2806;Parent=gene2885;Dbxref=Genbank:WP_002211350.1;Name=WP_002211350.1;Note=inhibits DNA replication at both initiation and elongation steps%3B stationary phase and starvation inducible;gbkey=CDS;product=cold-shock protein;protein_id=WP_002211350.1;transl_table=11
NC_004088.1	RefSeq	gene	3115580	3117529	.	-	.	ID=gene2886;Name=Y_RS14475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14475;old_locus_tag=y2813
NC_004088.1	Protein Homology	CDS	3115580	3117529	.	-	0	ID=cds2807;Parent=gene2886;Dbxref=Genbank:WP_002211351.1;Name=WP_002211351.1;Note=with MacA is involved in the export of macrolide;gbkey=CDS;product=MacB family efflux pump subunit;protein_id=WP_002211351.1;transl_table=11
NC_004088.1	RefSeq	gene	3117529	3118641	.	-	.	ID=gene2887;Name=Y_RS14480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14480;old_locus_tag=y2814
NC_004088.1	Protein Homology	CDS	3117529	3118641	.	-	0	ID=cds2808;Parent=gene2887;Dbxref=Genbank:WP_002216705.1;Name=WP_002216705.1;Note=confers macrolide resistance via active drug efflux;gbkey=CDS;product=macrolide transporter subunit MacA;protein_id=WP_002216705.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	3118807	3118825	.	+	.	ID=id352;Dbxref=CollecTF:EXPSITE_00000d40;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y2816;gbkey=protein_bind
NC_004088.1	RefSeq	gene	3118878	3119825	.	+	.	ID=gene2888;Name=Y_RS14490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14490;old_locus_tag=y2816
NC_004088.1	Protein Homology	CDS	3118878	3119825	.	+	0	ID=cds2809;Parent=gene2888;Dbxref=Genbank:WP_002211355.1;Name=WP_002211355.1;gbkey=CDS;product=virulence factor;protein_id=WP_002211355.1;transl_table=11
NC_004088.1	RefSeq	gene	3119962	3121629	.	-	.	ID=gene2889;Name=Y_RS14495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14495;old_locus_tag=y2817
NC_004088.1	Protein Homology	CDS	3119962	3121629	.	-	0	ID=cds2810;Parent=gene2889;Dbxref=Genbank:WP_002211356.1;Name=WP_002211356.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211356.1;transl_table=11
NC_004088.1	RefSeq	gene	3121982	3122878	.	+	.	ID=gene2890;Name=Y_RS14500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14500;old_locus_tag=y2818
NC_004088.1	Protein Homology	CDS	3121982	3122878	.	+	0	ID=cds2811;Parent=gene2890;Dbxref=Genbank:WP_002211358.1;Name=WP_002211358.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211358.1;transl_table=11
NC_004088.1	RefSeq	gene	3123080	3124732	.	+	.	ID=gene2891;Name=Y_RS14505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14505;old_locus_tag=y2819
NC_004088.1	Protein Homology	CDS	3123080	3124732	.	+	0	ID=cds2812;Parent=gene2891;Dbxref=Genbank:WP_002211359.1;Name=WP_002211359.1;gbkey=CDS;product=hydroxylamine reductase;protein_id=WP_002211359.1;transl_table=11
NC_004088.1	RefSeq	gene	3124846	3125868	.	+	.	ID=gene2892;Name=Y_RS14510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14510;old_locus_tag=y2820
NC_004088.1	Protein Homology	CDS	3124846	3125868	.	+	0	ID=cds2813;Parent=gene2892;Dbxref=Genbank:WP_002211360.1;Name=WP_002211360.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002211360.1;transl_table=11
NC_004088.1	RefSeq	gene	3126012	3127733	.	+	.	ID=gene2893;Name=Y_RS14515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14515;old_locus_tag=y2821
NC_004088.1	Protein Homology	CDS	3126012	3127733	.	+	0	ID=cds2814;Parent=gene2893;Dbxref=Genbank:WP_002211361.1;Name=WP_002211361.1;Note=catalyzes the formation of acetate from pyruvate;gbkey=CDS;product=pyruvate dehydrogenase;protein_id=WP_002211361.1;transl_table=11
NC_004088.1	RefSeq	gene	3128082	3129101	.	+	.	ID=gene2894;Name=Y_RS14520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14520;old_locus_tag=y2823
NC_004088.1	Protein Homology	CDS	3128082	3129101	.	+	0	ID=cds2815;Parent=gene2894;Dbxref=Genbank:WP_002211362.1;Name=WP_002211362.1;Note=low- specificity%3B catalyzes the formation of acetaldehyde and glycine from L-threonine%3B acts on L-threonine%2C L-allo-threonine%2C L-threo-phenylserine%2C and L-erythro-phenylserine;gbkey=CDS;product=threonine aldolase;protein_id=WP_002211362.1;transl_table=11
NC_004088.1	RefSeq	gene	3129098	3130588	.	+	.	ID=gene2895;Name=Y_RS14525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14525;old_locus_tag=y2824
NC_004088.1	Protein Homology	CDS	3129098	3130588	.	+	0	ID=cds2816;Parent=gene2895;Dbxref=Genbank:WP_002211363.1;Name=WP_002211363.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211363.1;transl_table=11
NC_004088.1	RefSeq	gene	3130688	3131695	.	+	.	ID=gene2896;Name=Y_RS14530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14530;old_locus_tag=y2825
NC_004088.1	Protein Homology	CDS	3130688	3131695	.	+	0	ID=cds2817;Parent=gene2896;Dbxref=Genbank:WP_002211364.1;Name=WP_002211364.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211364.1;transl_table=11
NC_004088.1	RefSeq	gene	3131792	3132367	.	+	.	ID=gene2897;Name=Y_RS14535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14535;old_locus_tag=y2826
NC_004088.1	Protein Homology	CDS	3131792	3132367	.	+	0	ID=cds2818;Parent=gene2897;Dbxref=Genbank:WP_002211365.1;Name=WP_002211365.1;Note=induced during stationary phase and by acivicin (a glutamine analog)%3B regulated by Lrp and RpoS;gbkey=CDS;product=lipoprotein;protein_id=WP_002211365.1;transl_table=11
NC_004088.1	RefSeq	gene	3132537	3133097	.	+	.	ID=gene2898;Name=Y_RS14540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14540;old_locus_tag=y2828
NC_004088.1	Protein Homology	CDS	3132537	3133097	.	+	0	ID=cds2819;Parent=gene2898;Dbxref=Genbank:WP_002211366.1;Name=WP_002211366.1;Note=catalyzes the interconversion of chorismate to prephenate;gbkey=CDS;product=chorismate mutase;protein_id=WP_002211366.1;transl_table=11
NC_004088.1	RefSeq	gene	3133392	3134120	.	+	.	ID=gene2899;Name=Y_RS14545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14545;old_locus_tag=y2829
NC_004088.1	Protein Homology	CDS	3133392	3134120	.	+	0	ID=cds2820;Parent=gene2899;Dbxref=Genbank:WP_002228008.1;Name=WP_002228008.1;gbkey=CDS;product=arginine ABC transporter ATP-binding protein;protein_id=WP_002228008.1;transl_table=11
NC_004088.1	RefSeq	gene	3134141	3134872	.	+	.	ID=gene2900;Name=Y_RS14550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14550;old_locus_tag=y2830
NC_004088.1	Protein Homology	CDS	3134141	3134872	.	+	0	ID=cds2821;Parent=gene2900;Dbxref=Genbank:WP_002211368.1;Name=WP_002211368.1;Note=with ArtPMQI is involved in arginine transport;gbkey=CDS;product=arginine ABC transporter substrate-binding protein;protein_id=WP_002211368.1;transl_table=11
NC_004088.1	RefSeq	gene	3134884	3135600	.	+	.	ID=gene2901;Name=Y_RS14555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14555;old_locus_tag=y2831
NC_004088.1	Protein Homology	CDS	3134884	3135600	.	+	0	ID=cds2822;Parent=gene2901;Dbxref=Genbank:WP_002211369.1;Name=WP_002211369.1;Note=with ArtPMJI transports arginine across the inner membrane;gbkey=CDS;product=arginine transporter permease subunit ArtQ;protein_id=WP_002211369.1;transl_table=11
NC_004088.1	RefSeq	gene	3135600	3136268	.	+	.	ID=gene2902;Name=artM;gbkey=Gene;gene=artM;gene_biotype=protein_coding;locus_tag=Y_RS14560;old_locus_tag=y2832
NC_004088.1	Protein Homology	CDS	3135600	3136268	.	+	0	ID=cds2823;Parent=gene2902;Dbxref=Genbank:WP_002211370.1;Name=WP_002211370.1;Note=with ArtPQJI acts to transport arginine across the inner membrane;gbkey=CDS;gene=artM;product=arginine transporter permease subunit ArtM;protein_id=WP_002211370.1;transl_table=11
NC_004088.1	RefSeq	gene	3136458	3137303	.	-	.	ID=gene2903;Name=Y_RS14570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14570;old_locus_tag=y2834
NC_004088.1	Protein Homology	CDS	3136458	3137303	.	-	0	ID=cds2824;Parent=gene2903;Dbxref=Genbank:WP_002223483.1;Name=WP_002223483.1;gbkey=CDS;product=membrane protein;protein_id=WP_002223483.1;transl_table=11
NC_004088.1	RefSeq	gene	3137300	3138670	.	-	.	ID=gene2904;Name=Y_RS14575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14575;old_locus_tag=y2835
NC_004088.1	Protein Homology	CDS	3137300	3138670	.	-	0	ID=cds2825;Parent=gene2904;Dbxref=Genbank:WP_002211373.1;Name=WP_002211373.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211373.1;transl_table=11
NC_004088.1	RefSeq	gene	3138663	3139460	.	-	.	ID=gene2905;Name=Y_RS14580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14580;old_locus_tag=y2836
NC_004088.1	Protein Homology	CDS	3138663	3139460	.	-	0	ID=cds2826;Parent=gene2905;Dbxref=Genbank:WP_002211374.1;Name=WP_002211374.1;gbkey=CDS;product=nicotianamine synthase;protein_id=WP_002211374.1;transl_table=11
NC_004088.1	RefSeq	gene	3139448	3140233	.	-	.	ID=gene2906;Name=Y_RS14585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14585;old_locus_tag=y2837
NC_004088.1	Protein Homology	CDS	3139448	3140233	.	-	0	ID=cds2827;Parent=gene2906;Dbxref=Genbank:WP_002211375.1;Name=WP_002211375.1;gbkey=CDS;product=iron ABC transporter ATP-binding protein;protein_id=WP_002211375.1;transl_table=11
NC_004088.1	RefSeq	gene	3140230	3141286	.	-	.	ID=gene2907;Name=Y_RS14590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS14590;pseudo=true
NC_004088.1	Protein Homology	CDS	3140230	3141286	.	-	0	ID=cds2828;Parent=gene2907;exception=annotated by transcript or proteomic data;gbkey=CDS;product=iron-siderophore ABC transporter permease;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3141286	3142377	.	-	.	ID=gene2908;Name=Y_RS14595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14595;old_locus_tag=y2842
NC_004088.1	Protein Homology	CDS	3141286	3142377	.	-	0	ID=cds2829;Parent=gene2908;Dbxref=Genbank:WP_002211377.1;Name=WP_002211377.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_002211377.1;transl_table=11
NC_004088.1	RefSeq	gene	3142789	3143715	.	-	.	ID=gene2909;Name=Y_RS14600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14600;old_locus_tag=y2843
NC_004088.1	Protein Homology	CDS	3142789	3143715	.	-	0	ID=cds2830;Parent=gene2909;Dbxref=Genbank:WP_002211378.1;Name=WP_002211378.1;gbkey=CDS;product=SPFH/band 7 family protein;protein_id=WP_002211378.1;transl_table=11
NC_004088.1	RefSeq	gene	3144056	3144286	.	-	.	ID=gene2910;Name=Y_RS14605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14605
NC_004088.1	Protein Homology	CDS	3144056	3144286	.	-	0	ID=cds2831;Parent=gene2910;Dbxref=Genbank:WP_002228004.1;Name=WP_002228004.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228004.1;transl_table=11
NC_004088.1	RefSeq	gene	3144298	3144414	.	-	.	ID=gene2911;Name=Y_RS14610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14610
NC_004088.1	Protein Homology	CDS	3144298	3144414	.	-	0	ID=cds2832;Parent=gene2911;Dbxref=Genbank:WP_002211379.1;Name=WP_002211379.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211379.1;transl_table=11
NC_004088.1	RefSeq	gene	3144534	3145265	.	+	.	ID=gene2912;Name=Y_RS14615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14615;old_locus_tag=y2844
NC_004088.1	Protein Homology	CDS	3144534	3145265	.	+	0	ID=cds2833;Parent=gene2912;Dbxref=Genbank:WP_002220045.1;Name=WP_002220045.1;Note=with ArtPMQI is involved in arginine transport;gbkey=CDS;product=arginine ABC transporter substrate-binding protein;protein_id=WP_002220045.1;transl_table=11
NC_004088.1	RefSeq	gene	3145392	3146522	.	-	.	ID=gene2913;Name=rumB;gbkey=Gene;gene=rumB;gene_biotype=protein_coding;locus_tag=Y_RS14620;old_locus_tag=y2845
NC_004088.1	Protein Homology	CDS	3145392	3146522	.	-	0	ID=cds2834;Parent=gene2913;Dbxref=Genbank:WP_002208756.1;Name=WP_002208756.1;Note=RNA uridine methyltransferase B%3B catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA;gbkey=CDS;gene=rumB;product=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;protein_id=WP_002208756.1;transl_table=11
NC_004088.1	RefSeq	gene	3146606	3147070	.	-	.	ID=gene2914;Name=Y_RS14625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14625;old_locus_tag=y2846
NC_004088.1	Protein Homology	CDS	3146606	3147070	.	-	0	ID=cds2835;Parent=gene2914;Dbxref=Genbank:WP_002208757.1;Name=WP_002208757.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208757.1;transl_table=11
NC_004088.1	RefSeq	gene	3147195	3148040	.	-	.	ID=gene2915;Name=Y_RS14630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14630;old_locus_tag=y2847
NC_004088.1	Protein Homology	CDS	3147195	3148040	.	-	0	ID=cds2836;Parent=gene2915;Dbxref=Genbank:WP_002208758.1;Name=WP_002208758.1;gbkey=CDS;product=putrescine/spermidine ABC transporter permease;protein_id=WP_002208758.1;transl_table=11
NC_004088.1	RefSeq	gene	3148037	3149002	.	-	.	ID=gene2916;Name=Y_RS14635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14635;old_locus_tag=y2848
NC_004088.1	Protein Homology	CDS	3148037	3149002	.	-	0	ID=cds2837;Parent=gene2916;Dbxref=Genbank:WP_002208759.1;Name=WP_002208759.1;gbkey=CDS;product=putrescine/spermidine ABC transporter permease;protein_id=WP_002208759.1;transl_table=11
NC_004088.1	RefSeq	gene	3149027	3150160	.	-	.	ID=gene2917;Name=potG;gbkey=Gene;gene=potG;gene_biotype=protein_coding;locus_tag=Y_RS14640;old_locus_tag=y2849
NC_004088.1	Protein Homology	CDS	3149027	3150160	.	-	0	ID=cds2838;Parent=gene2917;Dbxref=Genbank:WP_002208760.1;Name=WP_002208760.1;Note=part of the PotFGHI ATP-dependent putrescine transporter;gbkey=CDS;gene=potG;product=putrescine ABC transporter ATP-binding protein;protein_id=WP_002208760.1;transl_table=11
NC_004088.1	RefSeq	gene	3150331	3151440	.	-	.	ID=gene2918;Name=Y_RS14645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14645;old_locus_tag=y2851
NC_004088.1	Protein Homology	CDS	3150331	3151440	.	-	0	ID=cds2839;Parent=gene2918;Dbxref=Genbank:WP_002208762.1;Name=WP_002208762.1;gbkey=CDS;product=putrescine ABC transporter substrate-binding protein;protein_id=WP_002208762.1;transl_table=11
NC_004088.1	RefSeq	gene	3151958	3152443	.	-	.	ID=gene2919;Name=Y_RS14650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14650;old_locus_tag=y2853
NC_004088.1	Protein Homology	CDS	3151958	3152443	.	-	0	ID=cds2840;Parent=gene2919;Dbxref=Genbank:WP_002208763.1;Name=WP_002208763.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208763.1;transl_table=11
NC_004088.1	RefSeq	gene	3152450	3152569	.	-	.	ID=gene2920;Name=Y_RS14655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14655
NC_004088.1	Protein Homology	CDS	3152450	3152569	.	-	0	ID=cds2841;Parent=gene2920;Dbxref=Genbank:WP_002216035.1;Name=WP_002216035.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216035.1;transl_table=11
NC_004088.1	RefSeq	gene	3152585	3152899	.	-	.	ID=gene2921;Name=Y_RS14660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14660;old_locus_tag=y2854
NC_004088.1	Protein Homology	CDS	3152585	3152899	.	-	0	ID=cds2842;Parent=gene2921;Dbxref=Genbank:WP_002216036.1;Name=WP_002216036.1;gbkey=CDS;product=membrane protein;protein_id=WP_002216036.1;transl_table=11
NC_004088.1	RefSeq	gene	3153362	3153625	.	+	.	ID=gene2922;Name=Y_RS14665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14665;old_locus_tag=y2855
NC_004088.1	Protein Homology	CDS	3153362	3153625	.	+	0	ID=cds2843;Parent=gene2922;Dbxref=Genbank:WP_002208765.1;Name=WP_002208765.1;Note=functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase%3B also involved in reducing some disulfides in a coupled system with glutathione reductase;gbkey=CDS;product=glutaredoxin;protein_id=WP_002208765.1;transl_table=11
NC_004088.1	RefSeq	gene	3154035	3155723	.	+	.	ID=gene2923;Name=Y_RS14670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14670;old_locus_tag=y2857
NC_004088.1	Protein Homology	CDS	3154035	3155723	.	+	0	ID=cds2844;Parent=gene2923;Dbxref=Genbank:WP_002208766.1;Name=WP_002208766.1;gbkey=CDS;product=transporter;protein_id=WP_002208766.1;transl_table=11
NC_004088.1	RefSeq	gene	3156200	3156871	.	+	.	ID=gene2924;Name=Y_RS14675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14675;old_locus_tag=y2858
NC_004088.1	Protein Homology	CDS	3156200	3156871	.	+	0	ID=cds2845;Parent=gene2924;Dbxref=Genbank:WP_002208767.1;Name=WP_002208767.1;gbkey=CDS;product=phosphoesterase;protein_id=WP_002208767.1;transl_table=11
NC_004088.1	RefSeq	gene	3156871	3157476	.	+	.	ID=gene2925;Name=Y_RS14680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14680;old_locus_tag=y2859
NC_004088.1	Protein Homology	CDS	3156871	3157476	.	+	0	ID=cds2846;Parent=gene2925;Dbxref=Genbank:WP_002208768.1;Name=WP_002208768.1;gbkey=CDS;product=UDP-diphosphatase;protein_id=WP_002208768.1;transl_table=11
NC_004088.1	RefSeq	gene	3157734	3158405	.	+	.	ID=gene2926;Name=Y_RS14685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14685;old_locus_tag=y2860
NC_004088.1	Protein Homology	CDS	3157734	3158405	.	+	0	ID=cds2847;Parent=gene2926;Dbxref=Genbank:WP_002208769.1;Name=WP_002208769.1;gbkey=CDS;product=deoxyribose-phosphate aldolase;protein_id=WP_002208769.1;transl_table=11
NC_004088.1	RefSeq	gene	3158635	3159399	.	+	.	ID=gene2927;Name=Y_RS14690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14690;old_locus_tag=y2861
NC_004088.1	Protein Homology	CDS	3158635	3159399	.	+	0	ID=cds2848;Parent=gene2927;Dbxref=Genbank:WP_002208770.1;Name=WP_002208770.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208770.1;transl_table=11
NC_004088.1	RefSeq	gene	3160499	3161800	.	+	.	ID=gene2928;Name=Y_RS14695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14695;old_locus_tag=y2862
NC_004088.1	Protein Homology	CDS	3160499	3161800	.	+	0	ID=cds2849;Parent=gene2928;Dbxref=Genbank:WP_002215443.1;Name=WP_002215443.1;gbkey=CDS;product=serine transporter;protein_id=WP_002215443.1;transl_table=11
NC_004088.1	RefSeq	gene	3161797	3161949	.	-	.	ID=gene2929;Name=Y_RS14700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14700;old_locus_tag=y2863
NC_004088.1	Protein Homology	CDS	3161797	3161949	.	-	0	ID=cds2850;Parent=gene2929;Dbxref=Genbank:WP_002215444.1;Name=WP_002215444.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215444.1;transl_table=11
NC_004088.1	RefSeq	gene	3162240	3163445	.	-	.	ID=gene2930;Name=Y_RS14705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14705;old_locus_tag=y2864
NC_004088.1	Protein Homology	CDS	3162240	3163445	.	-	0	ID=cds2851;Parent=gene2930;Dbxref=Genbank:WP_002208774.1;Name=WP_002208774.1;Note=penicillin-binding protein 5%3B removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_002208774.1;transl_table=11
NC_004088.1	RefSeq	gene	3163780	3164451	.	-	.	ID=gene2931;Name=Y_RS14710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14710;old_locus_tag=y2865
NC_004088.1	Protein Homology	CDS	3163780	3164451	.	-	0	ID=cds2852;Parent=gene2931;Dbxref=Genbank:WP_002208775.1;Name=WP_002208775.1;gbkey=CDS;product=metal ABC transporter permease;protein_id=WP_002208775.1;transl_table=11
NC_004088.1	RefSeq	gene	3164448	3165434	.	-	.	ID=gene2932;Name=Y_RS14715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14715;old_locus_tag=y2866
NC_004088.1	Protein Homology	CDS	3164448	3165434	.	-	0	ID=cds2853;Parent=gene2932;Dbxref=Genbank:WP_002208776.1;Name=WP_002208776.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002208776.1;transl_table=11
NC_004088.1	RefSeq	gene	3165431	3166255	.	-	.	ID=gene2933;Name=Y_RS14720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14720;old_locus_tag=y2867
NC_004088.1	Protein Homology	CDS	3165431	3166255	.	-	0	ID=cds2854;Parent=gene2933;Dbxref=Genbank:WP_002208777.1;Name=WP_002208777.1;gbkey=CDS;product=metal ABC transporter substrate-binding protein;protein_id=WP_002208777.1;transl_table=11
NC_004088.1	RefSeq	gene	3166483	3167550	.	-	.	ID=gene2934;Name=Y_RS14725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14725;old_locus_tag=y2868
NC_004088.1	Protein Homology	CDS	3166483	3167550	.	-	0	ID=cds2855;Parent=gene2934;Dbxref=Genbank:WP_002208778.1;Name=WP_002208778.1;gbkey=CDS;product=2-oxobutyrate oxidase;protein_id=WP_002208778.1;transl_table=11
NC_004088.1	RefSeq	gene	3168037	3168687	.	+	.	ID=gene2935;Name=Y_RS14730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14730;old_locus_tag=y2870
NC_004088.1	Protein Homology	CDS	3168037	3168687	.	+	0	ID=cds2856;Parent=gene2935;Dbxref=Genbank:WP_002215448.1;Name=WP_002215448.1;gbkey=CDS;product=hydrolase;protein_id=WP_002215448.1;transl_table=11
NC_004088.1	RefSeq	gene	3168841	3169461	.	+	.	ID=gene2936;Name=Y_RS14735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14735;old_locus_tag=y2871
NC_004088.1	Protein Homology	CDS	3168841	3169461	.	+	0	ID=cds2857;Parent=gene2936;Dbxref=Genbank:WP_002208781.1;Name=WP_002208781.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_002208781.1;transl_table=11
NC_004088.1	RefSeq	gene	3169731	3171728	.	-	.	ID=gene2937;Name=Y_RS14740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14740;old_locus_tag=y2872
NC_004088.1	Protein Homology	CDS	3169731	3171728	.	-	0	ID=cds2858;Parent=gene2937;Dbxref=Genbank:WP_002208782.1;Name=WP_002208782.1;Note=YiuR%3B outer membrane siderophore receptor;gbkey=CDS;product=ligand-gated channel protein;protein_id=WP_002208782.1;transl_table=11
NC_004088.1	RefSeq	gene	3171988	3172776	.	-	.	ID=gene2938;Name=Y_RS14745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14745;old_locus_tag=y2873
NC_004088.1	Protein Homology	CDS	3171988	3172776	.	-	0	ID=cds2859;Parent=gene2938;Dbxref=Genbank:WP_002208783.1;Name=WP_002208783.1;gbkey=CDS;product=iron ABC transporter ATP-binding protein;protein_id=WP_002208783.1;transl_table=11
NC_004088.1	RefSeq	gene	3172773	3173855	.	-	.	ID=gene2939;Name=Y_RS14750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14750;old_locus_tag=y2874
NC_004088.1	Protein Homology	CDS	3172773	3173855	.	-	0	ID=cds2860;Parent=gene2939;Dbxref=Genbank:WP_002215451.1;Name=WP_002215451.1;gbkey=CDS;product=iron-siderophore ABC transporter permease;protein_id=WP_002215451.1;transl_table=11
NC_004088.1	RefSeq	gene	3174050	3175195	.	-	.	ID=gene2940;Name=Y_RS14755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14755;old_locus_tag=y2875
NC_004088.1	Protein Homology	CDS	3174050	3175195	.	-	0	ID=cds2861;Parent=gene2940;Dbxref=Genbank:WP_002208785.1;Name=WP_002208785.1;gbkey=CDS;product=iron ABC transporter substrate-binding protein;protein_id=WP_002208785.1;transl_table=11
NC_004088.1	RefSeq	gene	3175481	3176992	.	-	.	ID=gene2941;Name=Y_RS14760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14760;old_locus_tag=y2876
NC_004088.1	Protein Homology	CDS	3175481	3176992	.	-	0	ID=cds2862;Parent=gene2941;Dbxref=Genbank:WP_002208786.1;Name=WP_002208786.1;gbkey=CDS;product=lysine transporter;protein_id=WP_002208786.1;transl_table=11
NC_004088.1	RefSeq	gene	3177250	3178122	.	-	.	ID=gene2942;Name=Y_RS14765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14765;old_locus_tag=y2877
NC_004088.1	Protein Homology	CDS	3177250	3178122	.	-	0	ID=cds2863;Parent=gene2942;Dbxref=Genbank:WP_002208788.1;Name=WP_002208788.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208788.1;transl_table=11
NC_004088.1	RefSeq	gene	3178780	3179868	.	+	.	ID=gene2943;Name=Y_RS14770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14770;old_locus_tag=y2878
NC_004088.1	Protein Homology	CDS	3178780	3179868	.	+	0	ID=cds2864;Parent=gene2943;Dbxref=Genbank:WP_002208790.1;Name=WP_002208790.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208790.1;transl_table=11
NC_004088.1	RefSeq	gene	3180032	3180889	.	+	.	ID=gene2944;Name=Y_RS14775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14775;old_locus_tag=y2879
NC_004088.1	Protein Homology	CDS	3180032	3180889	.	+	0	ID=cds2865;Parent=gene2944;Dbxref=Genbank:WP_002208791.1;Name=WP_002208791.1;Note=Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues;gbkey=CDS;product=endonuclease;protein_id=WP_002208791.1;transl_table=11
NC_004088.1	RefSeq	gene	3180976	3183447	.	-	.	ID=gene2945;Name=Y_RS14780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14780;old_locus_tag=y2880
NC_004088.1	Protein Homology	CDS	3180976	3183447	.	-	0	ID=cds2866;Parent=gene2945;Dbxref=Genbank:WP_002208792.1;Name=WP_002208792.1;gbkey=CDS;product=usher protein;protein_id=WP_002208792.1;transl_table=11
NC_004088.1	RefSeq	gene	3183531	3184352	.	-	.	ID=gene2946;Name=Y_RS14785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14785;old_locus_tag=y2881
NC_004088.1	Protein Homology	CDS	3183531	3184352	.	-	0	ID=cds2867;Parent=gene2946;Dbxref=Genbank:WP_002208793.1;Name=WP_002208793.1;gbkey=CDS;product=chaperone protein PsaB;protein_id=WP_002208793.1;transl_table=11
NC_004088.1	RefSeq	gene	3184479	3184955	.	-	.	ID=gene2947;Name=Y_RS14790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14790;old_locus_tag=y2882
NC_004088.1	Protein Homology	CDS	3184479	3184955	.	-	0	ID=cds2868;Parent=gene2947;Dbxref=Genbank:WP_002208794.1;Name=WP_002208794.1;gbkey=CDS;product=pH 6 antigen;protein_id=WP_002208794.1;transl_table=11
NC_004088.1	RefSeq	gene	3185500	3185988	.	-	.	ID=gene2948;Name=Y_RS14795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14795;old_locus_tag=y2883
NC_004088.1	Protein Homology	CDS	3185500	3185988	.	-	0	ID=cds2869;Parent=gene2948;Dbxref=Genbank:WP_002216523.1;Name=WP_002216523.1;gbkey=CDS;product=protein PsaF;protein_id=WP_002216523.1;transl_table=11
NC_004088.1	RefSeq	gene	3185985	3186629	.	-	.	ID=gene2949;Name=Y_RS14800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14800;old_locus_tag=y2884
NC_004088.1	Protein Homology	CDS	3185985	3186629	.	-	0	ID=cds2870;Parent=gene2949;Dbxref=Genbank:WP_002208796.1;Name=WP_002208796.1;gbkey=CDS;product=protein PsaE;protein_id=WP_002208796.1;transl_table=11
NC_004088.1	RefSeq	gene	3186954	3188654	.	-	.	ID=gene2950;Name=Y_RS14805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14805;old_locus_tag=y2885
NC_004088.1	Protein Homology	CDS	3186954	3188654	.	-	0	ID=cds2871;Parent=gene2950;Dbxref=Genbank:WP_002208797.1;Name=WP_002208797.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS fructose transporter subunit IIBC;protein_id=WP_002208797.1;transl_table=11
NC_004088.1	RefSeq	gene	3188669	3189607	.	-	.	ID=gene2951;Name=fruK;gbkey=Gene;gene=fruK;gene_biotype=protein_coding;locus_tag=Y_RS14810;old_locus_tag=y2886
NC_004088.1	Protein Homology	CDS	3188669	3189607	.	-	0	ID=cds2872;Parent=gene2951;Dbxref=Genbank:WP_002208798.1;Name=WP_002208798.1;Note=converts fructose-1-phosphate and ATP to fructose-1%2C6-bisphosphate and ADP%3B highly specific for fructose-1-phopshate%3B similar to PfkB%3B forms homodimers;gbkey=CDS;gene=fruK;product=1-phosphofructokinase;protein_id=WP_002208798.1;transl_table=11
NC_004088.1	RefSeq	gene	3189604	3190737	.	-	.	ID=gene2952;Name=Y_RS14815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14815;old_locus_tag=y2887
NC_004088.1	Protein Homology	CDS	3189604	3190737	.	-	0	ID=cds2873;Parent=gene2952;Dbxref=Genbank:WP_002208799.1;Name=WP_002208799.1;Note=phosphoenolpyruvate (PEP)-dependent%2C sugar transporting phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIA is phosphorylated by phospho-HPr which then transfers the phosphoryl group to the IIB component;gbkey=CDS;product=PTS fructose transporter subunit IIA;protein_id=WP_002208799.1;transl_table=11
NC_004088.1	RefSeq	gene	3190999	3191454	.	+	.	ID=gene2953;Name=Y_RS14820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14820;old_locus_tag=y2888
NC_004088.1	Protein Homology	CDS	3190999	3191454	.	+	0	ID=cds2874;Parent=gene2953;Dbxref=Genbank:WP_002208801.1;Name=WP_002208801.1;gbkey=CDS;product=ADP-ribose pyrophosphatase;protein_id=WP_002208801.1;transl_table=11
NC_004088.1	RefSeq	gene	3191567	3192565	.	-	.	ID=gene2954;Name=Y_RS14825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14825;old_locus_tag=y2889
NC_004088.1	Protein Homology	CDS	3191567	3192565	.	-	0	ID=cds2875;Parent=gene2954;Dbxref=Genbank:WP_002208802.1;Name=WP_002208802.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002208802.1;transl_table=11
NC_004088.1	RefSeq	gene	3192601	3194115	.	-	.	ID=gene2955;Name=Y_RS14830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14830;old_locus_tag=y2890
NC_004088.1	Protein Homology	CDS	3192601	3194115	.	-	0	ID=cds2876;Parent=gene2955;Dbxref=Genbank:WP_002363696.1;Name=WP_002363696.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002363696.1;transl_table=11
NC_004088.1	RefSeq	gene	3194284	3195372	.	-	.	ID=gene2956;Name=Y_RS14835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14835;old_locus_tag=y2891
NC_004088.1	Protein Homology	CDS	3194284	3195372	.	-	0	ID=cds2877;Parent=gene2956;Dbxref=Genbank:WP_002208804.1;Name=WP_002208804.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002208804.1;transl_table=11
NC_004088.1	RefSeq	gene	3195496	3196206	.	-	.	ID=gene2957;Name=Y_RS14840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14840;old_locus_tag=y2892
NC_004088.1	Protein Homology	CDS	3195496	3196206	.	-	0	ID=cds2878;Parent=gene2957;Dbxref=Genbank:WP_002208805.1;Name=WP_002208805.1;gbkey=CDS;product=ribose-5-phosphate isomerase A 2;protein_id=WP_002208805.1;transl_table=11
NC_004088.1	RefSeq	gene	3196226	3197779	.	-	.	ID=gene2958;Name=Y_RS14845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14845;old_locus_tag=y2893
NC_004088.1	Protein Homology	CDS	3196226	3197779	.	-	0	ID=cds2879;Parent=gene2958;Dbxref=Genbank:WP_002208806.1;Name=WP_002208806.1;gbkey=CDS;product=carbohydrate kinase;protein_id=WP_002208806.1;transl_table=11
NC_004088.1	RefSeq	gene	3197783	3199279	.	-	.	ID=gene2959;Name=Y_RS14850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14850;old_locus_tag=y2894
NC_004088.1	Protein Homology	CDS	3197783	3199279	.	-	0	ID=cds2880;Parent=gene2959;Dbxref=Genbank:WP_002208807.1;Name=WP_002208807.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_002208807.1;transl_table=11
NC_004088.1	RefSeq	gene	3199631	3200773	.	+	.	ID=gene2960;Name=Y_RS14855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14855;old_locus_tag=y2895
NC_004088.1	Protein Homology	CDS	3199631	3200773	.	+	0	ID=cds2881;Parent=gene2960;Dbxref=Genbank:WP_002208808.1;Name=WP_002208808.1;gbkey=CDS;product=fumarylacetoacetate hydrolase;protein_id=WP_002208808.1;transl_table=11
NC_004088.1	RefSeq	gene	3200785	3201735	.	+	.	ID=gene2961;Name=Y_RS14860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14860;old_locus_tag=y2896
NC_004088.1	Protein Homology	CDS	3200785	3201735	.	+	0	ID=cds2882;Parent=gene2961;Dbxref=Genbank:WP_002264752.1;Name=WP_002264752.1;gbkey=CDS;product=dihydrofolate reductase;protein_id=WP_002264752.1;transl_table=11
NC_004088.1	RefSeq	gene	3201746	3202561	.	+	.	ID=gene2962;Name=Y_RS14865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14865;old_locus_tag=y2897
NC_004088.1	Protein Homology	CDS	3201746	3202561	.	+	0	ID=cds2883;Parent=gene2962;Dbxref=Genbank:WP_002208810.1;Name=WP_002208810.1;gbkey=CDS;product=3-oxoacyl-ACP reductase;protein_id=WP_002208810.1;transl_table=11
NC_004088.1	RefSeq	gene	3202630	3202884	.	-	.	ID=gene2963;Name=Y_RS14870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14870;old_locus_tag=y2898
NC_004088.1	Protein Homology	CDS	3202630	3202884	.	-	0	ID=cds2884;Parent=gene2963;Dbxref=Genbank:WP_002208811.1;Name=WP_002208811.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208811.1;transl_table=11
NC_004088.1	RefSeq	gene	3203259	3204503	.	+	.	ID=gene2964;Name=Y_RS14875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14875;old_locus_tag=y2900
NC_004088.1	Protein Homology	CDS	3203259	3204503	.	+	0	ID=cds2885;Parent=gene2964;Dbxref=Genbank:WP_002208812.1;Name=WP_002208812.1;Note=tryptophan transporter of high affinity;gbkey=CDS;product=tryptophan permease;protein_id=WP_002208812.1;transl_table=11
NC_004088.1	RefSeq	gene	3204607	3205179	.	+	.	ID=gene2965;Name=Y_RS14880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14880;old_locus_tag=y2901
NC_004088.1	Protein Homology	CDS	3204607	3205179	.	+	0	ID=cds2886;Parent=gene2965;Dbxref=Genbank:WP_002228019.1;Name=WP_002228019.1;Note=Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro%2C suggesting its involvement in the formation of the first peptide bond of a protein;gbkey=CDS;product=elongation factor P-like protein;protein_id=WP_002228019.1;transl_table=11
NC_004088.1	RefSeq	gene	3205319	3206512	.	-	.	ID=gene2966;Name=Y_RS14885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14885;old_locus_tag=y2902
NC_004088.1	Protein Homology	CDS	3205319	3206512	.	-	0	ID=cds2887;Parent=gene2966;Dbxref=Genbank:WP_002208813.1;Name=WP_002208813.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate;gbkey=CDS;product=mannonate dehydratase;protein_id=WP_002208813.1;transl_table=11
NC_004088.1	RefSeq	gene	3207097	3208569	.	+	.	ID=gene2967;Name=Y_RS14890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14890;old_locus_tag=y2903
NC_004088.1	Protein Homology	CDS	3207097	3208569	.	+	0	ID=cds2888;Parent=gene2967;Dbxref=Genbank:WP_002208815.1;Name=WP_002208815.1;gbkey=CDS;product=D-mannonate oxidoreductase;protein_id=WP_002208815.1;transl_table=11
NC_004088.1	RefSeq	gene	3208713	3209456	.	-	.	ID=gene2968;Name=Y_RS14895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14895;old_locus_tag=y2904
NC_004088.1	Protein Homology	CDS	3208713	3209456	.	-	0	ID=cds2889;Parent=gene2968;Dbxref=Genbank:WP_002208816.1;Name=WP_002208816.1;Note=regulates the expression of uxuBA;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208816.1;transl_table=11
NC_004088.1	RefSeq	gene	3209827	3209940	.	+	.	ID=gene2969;Name=Y_RS14900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14900
NC_004088.1	Protein Homology	CDS	3209827	3209940	.	+	0	ID=cds2890;Parent=gene2969;Dbxref=Genbank:WP_002208817.1;Name=WP_002208817.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208817.1;transl_table=11
NC_004088.1	RefSeq	gene	3210264	3211247	.	+	.	ID=gene2970;Name=Y_RS14905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14905;old_locus_tag=y2906
NC_004088.1	Protein Homology	CDS	3210264	3211247	.	+	0	ID=cds2891;Parent=gene2970;Dbxref=Genbank:WP_002208819.1;Name=WP_002208819.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208819.1;transl_table=11
NC_004088.1	RefSeq	gene	3211306	3212007	.	+	.	ID=gene2971;Name=Y_RS14910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14910;old_locus_tag=y2907
NC_004088.1	Protein Homology	CDS	3211306	3212007	.	+	0	ID=cds2892;Parent=gene2971;Dbxref=Genbank:WP_002208820.1;Name=WP_002208820.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208820.1;transl_table=11
NC_004088.1	RefSeq	gene	3212449	3213033	.	+	.	ID=gene2972;Name=spr;gbkey=Gene;gene=spr;gene_biotype=protein_coding;gene_synonym=yeiV;locus_tag=Y_RS14915;old_locus_tag=y2908
NC_004088.1	Protein Homology	CDS	3212449	3213033	.	+	0	ID=cds2893;Parent=gene2972;Dbxref=Genbank:WP_002208822.1;Name=WP_002208822.1;Note=mutational suppressor of prc thermosensitivity;gbkey=CDS;gene=spr;product=hypothetical protein;protein_id=WP_002208822.1;transl_table=11
NC_004088.1	RefSeq	gene	3213729	3215201	.	+	.	ID=gene2973;Name=Y_RS14920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14920;old_locus_tag=y2909
NC_004088.1	Protein Homology	CDS	3213729	3215201	.	+	0	ID=cds2894;Parent=gene2973;Dbxref=Genbank:WP_002231279.1;Name=WP_002231279.1;Note=involved in resistance to the phages N4 and lambda;gbkey=CDS;product=phage resistance protein;protein_id=WP_002231279.1;transl_table=11
NC_004088.1	RefSeq	gene	3215283	3217091	.	+	.	ID=gene2974;Name=Y_RS14925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14925;old_locus_tag=y2910
NC_004088.1	Protein Homology	CDS	3215283	3217091	.	+	0	ID=cds2895;Parent=gene2974;Dbxref=Genbank:WP_002208825.1;Name=WP_002208825.1;Note=with YejBEF is involved in resistance to microcin C;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_002208825.1;transl_table=11
NC_004088.1	RefSeq	gene	3217101	3218201	.	+	.	ID=gene2975;Name=Y_RS14930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14930;old_locus_tag=y2911
NC_004088.1	Protein Homology	CDS	3217101	3218201	.	+	0	ID=cds2896;Parent=gene2975;Dbxref=Genbank:WP_002208826.1;Name=WP_002208826.1;Note=with YejAEF is involved in resistance to microcin C;gbkey=CDS;product=microcin C ABC transporter permease YejB;protein_id=WP_002208826.1;transl_table=11
NC_004088.1	RefSeq	gene	3218204	3219229	.	+	.	ID=gene2976;Name=Y_RS14935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14935;old_locus_tag=y2912
NC_004088.1	Protein Homology	CDS	3218204	3219229	.	+	0	ID=cds2897;Parent=gene2976;Dbxref=Genbank:WP_002353954.1;Name=WP_002353954.1;Note=part of the microcin C transport system;gbkey=CDS;product=microcin C ABC transporter permease;protein_id=WP_002353954.1;transl_table=11
NC_004088.1	RefSeq	gene	3219231	3220823	.	+	.	ID=gene2977;Name=Y_RS14940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14940;old_locus_tag=y2913
NC_004088.1	Protein Homology	CDS	3219231	3220823	.	+	0	ID=cds2898;Parent=gene2977;Dbxref=Genbank:WP_002208828.1;Name=WP_002208828.1;Note=with YejAEF is involved in resistance to microcin C;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002208828.1;transl_table=11
NC_004088.1	RefSeq	gene	3220884	3221228	.	-	.	ID=gene2978;Name=Y_RS14945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14945;old_locus_tag=y2914
NC_004088.1	Protein Homology	CDS	3220884	3221228	.	-	0	ID=cds2899;Parent=gene2978;Dbxref=Genbank:WP_002208829.1;Name=WP_002208829.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208829.1;transl_table=11
NC_004088.1	RefSeq	gene	3222179	3223378	.	-	.	ID=gene2979;Name=Y_RS14950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14950;old_locus_tag=y2916
NC_004088.1	Protein Homology	CDS	3222179	3223378	.	-	0	ID=cds2900;Parent=gene2979;Dbxref=Genbank:WP_002208831.1;Name=WP_002208831.1;Note=Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance;gbkey=CDS;product=Bcr/CflA family drug resistance efflux transporter;protein_id=WP_002208831.1;transl_table=11
NC_004088.1	RefSeq	gene	3223497	3224204	.	-	.	ID=gene2980;Name=Y_RS14955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14955;old_locus_tag=y2917
NC_004088.1	Protein Homology	CDS	3223497	3224204	.	-	0	ID=cds2901;Parent=gene2980;Dbxref=Genbank:WP_002208832.1;Name=WP_002208832.1;Note=catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA;gbkey=CDS;product=ribosomal small subunit pseudouridine synthase A;protein_id=WP_002208832.1;transl_table=11
NC_004088.1	RefSeq	gene	3224718	3226475	.	+	.	ID=gene2981;Name=Y_RS14960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14960;old_locus_tag=y2919
NC_004088.1	Protein Homology	CDS	3224718	3226475	.	+	0	ID=cds2902;Parent=gene2981;Dbxref=Genbank:WP_002208833.1;Name=WP_002208833.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208833.1;transl_table=11
NC_004088.1	RefSeq	gene	3226637	3226921	.	+	.	ID=gene2982;Name=Y_RS14965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14965;old_locus_tag=y2920
NC_004088.1	Protein Homology	CDS	3226637	3226921	.	+	0	ID=cds2903;Parent=gene2982;Dbxref=Genbank:WP_002208834.1;Name=WP_002208834.1;Note=the Ctc family of proteins consists of two types%2C one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response;gbkey=CDS;product=50S ribosomal protein L25;protein_id=WP_002208834.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3226950	3227673	.	+	.	ID=id353;gbkey=repeat_region
NC_004088.1	RefSeq	region	3226954	3227663	.	-	.	ID=id354;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3227060	3227518	.	-	.	ID=gene2983;Name=Y_RS14970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14970;old_locus_tag=y2921
NC_004088.1	Protein Homology	CDS	3227060	3227518	.	-	0	ID=cds2904;Parent=gene2983;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	3227719	3228723	.	-	.	ID=gene2984;Name=Y_RS14975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14975;old_locus_tag=y2922
NC_004088.1	Protein Homology	CDS	3227719	3228723	.	-	0	ID=cds2905;Parent=gene2984;Dbxref=Genbank:WP_002208835.1;Name=WP_002208835.1;gbkey=CDS;product=nucleoid-associated protein;protein_id=WP_002208835.1;transl_table=11
NC_004088.1	RefSeq	gene	3228901	3229128	.	+	.	ID=gene2985;Name=Y_RS14980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14980;old_locus_tag=y2923
NC_004088.1	Protein Homology	CDS	3228901	3229128	.	+	0	ID=cds2906;Parent=gene2985;Dbxref=Genbank:WP_002208836.1;Name=WP_002208836.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208836.1;transl_table=11
NC_004088.1	RefSeq	gene	3229156	3230952	.	+	.	ID=gene2986;Name=Y_RS14985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS14985;old_locus_tag=y2924
NC_004088.1	Protein Homology	CDS	3229156	3230952	.	+	0	ID=cds2907;Parent=gene2986;Dbxref=Genbank:WP_002208837.1;Name=WP_002208837.1;gbkey=CDS;product=membrane protein;protein_id=WP_002208837.1;transl_table=11
NC_004088.1	RefSeq	gene	3231057	3231133	.	+	.	ID=gene2987;Name=Y_RS14990;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS14990;old_locus_tag=yt056
NC_004088.1	tRNAscan-SE	tRNA	3231057	3231133	.	+	.	ID=rna73;Parent=gene2987;anticodon=(pos:3231091..3231093);gbkey=tRNA;product=tRNA-Pro
NC_004088.1	tRNAscan-SE	exon	3231057	3231133	.	+	.	ID=id355;Parent=rna73;anticodon=(pos:3231091..3231093);gbkey=tRNA;product=tRNA-Pro
NC_004088.1	RefSeq	gene	3231525	3231737	.	+	.	ID=gene2988;Name=Y_RS15000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15000;old_locus_tag=y2927
NC_004088.1	Protein Homology	CDS	3231525	3231737	.	+	0	ID=cds2908;Parent=gene2988;Dbxref=Genbank:WP_002217815.1;Name=WP_002217815.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217815.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3231803	3232355	.	+	.	ID=id356;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3231922	3233070	.	+	.	ID=gene2989;Name=Y_RS15005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15005;old_locus_tag=y2928
NC_004088.1	Protein Homology	CDS	3231922	3233070	.	+	0	ID=cds2909;Parent=gene2989;Dbxref=Genbank:WP_002208839.1;Name=WP_002208839.1;gbkey=CDS;product=HNH endonuclease;protein_id=WP_002208839.1;transl_table=11
NC_004088.1	RefSeq	gene	3233083	3233571	.	+	.	ID=gene2990;Name=Y_RS15010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15010;old_locus_tag=y2929
NC_004088.1	Protein Homology	CDS	3233083	3233571	.	+	0	ID=cds2910;Parent=gene2990;Dbxref=Genbank:WP_002208840.1;Name=WP_002208840.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208840.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3233830	3233950	.	+	.	ID=id357;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3234271	3234633	.	+	.	ID=gene2991;Name=Y_RS15020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15020;old_locus_tag=y2931
NC_004088.1	Protein Homology	CDS	3234271	3234633	.	+	0	ID=cds2911;Parent=gene2991;Dbxref=Genbank:WP_002208841.1;Name=WP_002208841.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208841.1;transl_table=11
NC_004088.1	RefSeq	gene	3234759	3236195	.	-	.	ID=gene2992;Name=Y_RS15025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15025;old_locus_tag=y2932
NC_004088.1	Protein Homology	CDS	3234759	3236195	.	-	0	ID=cds2912;Parent=gene2992;Dbxref=Genbank:WP_002208842.1;Name=WP_002208842.1;gbkey=CDS;product=6-phospho-beta-glucosidase;protein_id=WP_002208842.1;transl_table=11
NC_004088.1	RefSeq	gene	3236486	3237226	.	-	.	ID=gene2993;Name=Y_RS15030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15030;old_locus_tag=y2933
NC_004088.1	Protein Homology	CDS	3236486	3237226	.	-	0	ID=cds2913;Parent=gene2993;Dbxref=Genbank:WP_002208843.1;Name=WP_002208843.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208843.1;transl_table=11
NC_004088.1	RefSeq	gene	3237524	3238303	.	-	.	ID=gene2994;Name=Y_RS15035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15035;old_locus_tag=y2934
NC_004088.1	Protein Homology	CDS	3237524	3238303	.	-	0	ID=cds2914;Parent=gene2994;Dbxref=Genbank:WP_002208845.1;Name=WP_002208845.1;gbkey=CDS;product=tail protein;protein_id=WP_002208845.1;transl_table=11
NC_004088.1	RefSeq	gene	3238400	3238747	.	-	.	ID=gene2995;Name=Y_RS15040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15040;old_locus_tag=y2935
NC_004088.1	Protein Homology	CDS	3238400	3238747	.	-	0	ID=cds2915;Parent=gene2995;Dbxref=Genbank:WP_002208846.1;Name=WP_002208846.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208846.1;transl_table=11
NC_004088.1	RefSeq	gene	3238744	3239004	.	-	.	ID=gene2996;Name=Y_RS15045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15045;old_locus_tag=y2936
NC_004088.1	Protein Homology	CDS	3238744	3239004	.	-	0	ID=cds2916;Parent=gene2996;Dbxref=Genbank:WP_002215458.1;Name=WP_002215458.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215458.1;transl_table=11
NC_004088.1	RefSeq	gene	3239001	3240137	.	-	.	ID=gene2997;Name=Y_RS15050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15050;old_locus_tag=y2937
NC_004088.1	Protein Homology	CDS	3239001	3240137	.	-	0	ID=cds2917;Parent=gene2997;Dbxref=Genbank:WP_002208847.1;Name=WP_002208847.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208847.1;transl_table=11
NC_004088.1	RefSeq	gene	3240141	3240596	.	-	.	ID=gene2998;Name=Y_RS15055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15055;old_locus_tag=y2938
NC_004088.1	Protein Homology	CDS	3240141	3240596	.	-	0	ID=cds2918;Parent=gene2998;Dbxref=Genbank:WP_002208848.1;Name=WP_002208848.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208848.1;transl_table=11
NC_004088.1	RefSeq	gene	3240593	3241189	.	-	.	ID=gene2999;Name=Y_RS15060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15060;old_locus_tag=y2939
NC_004088.1	Protein Homology	CDS	3240593	3241189	.	-	0	ID=cds2919;Parent=gene2999;Dbxref=Genbank:WP_002215460.1;Name=WP_002215460.1;gbkey=CDS;product=baseplate assembly protein;protein_id=WP_002215460.1;transl_table=11
NC_004088.1	RefSeq	gene	3241205	3242260	.	-	.	ID=gene3000;Name=Y_RS15065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15065;old_locus_tag=y2940
NC_004088.1	Protein Homology	CDS	3241205	3242260	.	-	0	ID=cds2920;Parent=gene3000;Dbxref=Genbank:WP_002208850.1;Name=WP_002208850.1;gbkey=CDS;product=tail protein;protein_id=WP_002208850.1;transl_table=11
NC_004088.1	RefSeq	gene	3242257	3243663	.	-	.	ID=gene3001;Name=Y_RS15070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15070;old_locus_tag=y2941
NC_004088.1	Protein Homology	CDS	3242257	3243663	.	-	0	ID=cds2921;Parent=gene3001;Dbxref=Genbank:WP_002208852.1;Name=WP_002208852.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208852.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3243721	3243890	.	+	.	ID=id358;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3243930	3245423	.	-	.	ID=gene3002;Name=Y_RS15075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15075;old_locus_tag=y2942
NC_004088.1	Protein Homology	CDS	3243930	3245423	.	-	0	ID=cds2922;Parent=gene3002;Dbxref=Genbank:WP_002208853.1;Name=WP_002208853.1;gbkey=CDS;product=coat protein;protein_id=WP_002208853.1;transl_table=11
NC_004088.1	RefSeq	gene	3245544	3245843	.	-	.	ID=gene3003;Name=Y_RS15080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15080;old_locus_tag=y2943
NC_004088.1	Protein Homology	CDS	3245544	3245843	.	-	0	ID=cds2923;Parent=gene3003;Dbxref=Genbank:WP_002208854.1;Name=WP_002208854.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208854.1;transl_table=11
NC_004088.1	RefSeq	gene	3245845	3246213	.	-	.	ID=gene3004;Name=Y_RS15085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15085;old_locus_tag=y2945
NC_004088.1	Protein Homology	CDS	3245845	3246213	.	-	0	ID=cds2924;Parent=gene3004;Dbxref=Genbank:WP_002208855.1;Name=WP_002208855.1;gbkey=CDS;product=phage tail protein;protein_id=WP_002208855.1;transl_table=11
NC_004088.1	RefSeq	gene	3246235	3247743	.	-	.	ID=gene3005;Name=Y_RS15090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15090;old_locus_tag=y2946
NC_004088.1	Protein Homology	CDS	3246235	3247743	.	-	0	ID=cds2925;Parent=gene3005;Dbxref=Genbank:WP_002208856.1;Name=WP_002208856.1;gbkey=CDS;product=tail protein;protein_id=WP_002208856.1;transl_table=11
NC_004088.1	RefSeq	gene	3247740	3247934	.	-	.	ID=gene3006;Name=Y_RS15095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15095
NC_004088.1	Protein Homology	CDS	3247740	3247934	.	-	0	ID=cds2926;Parent=gene3006;Dbxref=Genbank:WP_002208857.1;Name=WP_002208857.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208857.1;transl_table=11
NC_004088.1	RefSeq	gene	3247939	3248508	.	-	.	ID=gene3007;Name=Y_RS15100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15100;old_locus_tag=y2947
NC_004088.1	Protein Homology	CDS	3247939	3248508	.	-	0	ID=cds2927;Parent=gene3007;Dbxref=Genbank:WP_002363609.1;Name=WP_002363609.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_002363609.1;transl_table=11
NC_004088.1	RefSeq	gene	3248602	3248892	.	-	.	ID=gene3008;Name=Y_RS15105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15105;old_locus_tag=y2948
NC_004088.1	Protein Homology	CDS	3248602	3248892	.	-	0	ID=cds2928;Parent=gene3008;Dbxref=Genbank:WP_002208859.1;Name=WP_002208859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208859.1;transl_table=11
NC_004088.1	RefSeq	gene	3249523	3250317	.	-	.	ID=gene3009;Name=Y_RS15110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15110;old_locus_tag=y2949
NC_004088.1	Protein Homology	CDS	3249523	3250317	.	-	0	ID=cds2929;Parent=gene3009;Dbxref=Genbank:WP_002208860.1;Name=WP_002208860.1;gbkey=CDS;product=hydroxypyruvate isomerase;protein_id=WP_002208860.1;transl_table=11
NC_004088.1	RefSeq	gene	3250293	3251102	.	-	.	ID=gene3010;Name=Y_RS15115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15115;old_locus_tag=y2950
NC_004088.1	Protein Homology	CDS	3250293	3251102	.	-	0	ID=cds2930;Parent=gene3010;Dbxref=Genbank:WP_002215467.1;Name=WP_002215467.1;gbkey=CDS;product=alkaline phosphatase;protein_id=WP_002215467.1;transl_table=11
NC_004088.1	RefSeq	gene	3251108	3251757	.	-	.	ID=gene3011;Name=Y_RS15120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS15120;old_locus_tag=y2951;pseudo=true
NC_004088.1	Protein Homology	CDS	3251108	3251757	.	-	0	ID=cds2931;Parent=gene3011;exception=annotated by transcript or proteomic data;gbkey=CDS;product=aldolase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3251814	3253118	.	-	.	ID=gene3012;Name=Y_RS15125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15125;old_locus_tag=y2952
NC_004088.1	Protein Homology	CDS	3251814	3253118	.	-	0	ID=cds2932;Parent=gene3012;Dbxref=Genbank:WP_002208862.1;Name=WP_002208862.1;gbkey=CDS;product=tRNA synthetase;protein_id=WP_002208862.1;transl_table=11
NC_004088.1	RefSeq	gene	3253329	3253808	.	-	.	ID=gene3013;Name=Y_RS15130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15130;old_locus_tag=y2953
NC_004088.1	Protein Homology	CDS	3253329	3253808	.	-	0	ID=cds2933;Parent=gene3013;Dbxref=Genbank:WP_002215470.1;Name=WP_002215470.1;gbkey=CDS;product=antitermination protein Q;protein_id=WP_002215470.1;transl_table=11
NC_004088.1	RefSeq	gene	3254082	3254804	.	+	.	ID=gene3014;Name=Y_RS15135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15135;old_locus_tag=y2954
NC_004088.1	Protein Homology	CDS	3254082	3254804	.	+	0	ID=cds2934;Parent=gene3014;Dbxref=Genbank:WP_002208864.1;Name=WP_002208864.1;gbkey=CDS;product=peptidase S24;protein_id=WP_002208864.1;transl_table=11
NC_004088.1	RefSeq	gene	3255010	3255252	.	+	.	ID=gene3015;Name=Y_RS15140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15140;old_locus_tag=y2956
NC_004088.1	Protein Homology	CDS	3255010	3255252	.	+	0	ID=cds2935;Parent=gene3015;Dbxref=Genbank:WP_002208866.1;Name=WP_002208866.1;gbkey=CDS;product=virulence protein MsgA;protein_id=WP_002208866.1;transl_table=11
NC_004088.1	RefSeq	gene	3255424	3256359	.	+	.	ID=gene3016;Name=Y_RS15145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15145;old_locus_tag=y2957
NC_004088.1	Protein Homology	CDS	3255424	3256359	.	+	0	ID=cds2936;Parent=gene3016;Dbxref=Genbank:WP_002208867.1;Name=WP_002208867.1;gbkey=CDS;product=outer membrane protease;protein_id=WP_002208867.1;transl_table=11
NC_004088.1	RefSeq	gene	3256781	3258568	.	+	.	ID=gene3017;Name=Y_RS15150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15150;old_locus_tag=y2958
NC_004088.1	Protein Homology	CDS	3256781	3258568	.	+	0	ID=cds2937;Parent=gene3017;Dbxref=Genbank:WP_002208868.1;Name=WP_002208868.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_002208868.1;transl_table=11
NC_004088.1	RefSeq	gene	3258642	3259631	.	-	.	ID=gene3018;Name=Y_RS15155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15155;old_locus_tag=y2960
NC_004088.1	Protein Homology	CDS	3258642	3259631	.	-	0	ID=cds2938;Parent=gene3018;Dbxref=Genbank:WP_002363585.1;Name=WP_002363585.1;gbkey=CDS;product=MBL fold metallo-hydrolase;protein_id=WP_002363585.1;transl_table=11
NC_004088.1	RefSeq	gene	3260047	3261573	.	+	.	ID=gene3019;Name=Y_RS15160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15160;old_locus_tag=y2961
NC_004088.1	Protein Homology	CDS	3260047	3261573	.	+	0	ID=cds2939;Parent=gene3019;Dbxref=Genbank:WP_002208870.1;Name=WP_002208870.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002208870.1;transl_table=11
NC_004088.1	RefSeq	gene	3261560	3261730	.	-	.	ID=gene3020;Name=Y_RS15165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15165;old_locus_tag=y2963
NC_004088.1	Protein Homology	CDS	3261560	3261730	.	-	0	ID=cds2940;Parent=gene3020;Dbxref=Genbank:WP_002208871.1;Name=WP_002208871.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208871.1;transl_table=11
NC_004088.1	RefSeq	gene	3261848	3263014	.	+	.	ID=gene3021;Name=Y_RS15170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15170;old_locus_tag=y2964
NC_004088.1	Protein Homology	CDS	3261848	3263014	.	+	0	ID=cds2941;Parent=gene3021;Dbxref=Genbank:WP_002228026.1;Name=WP_002228026.1;Note=this protein has no known enzymatic function;gbkey=CDS;product=beta-lactam-binding protein AmpH;protein_id=WP_002228026.1;transl_table=11
NC_004088.1	RefSeq	gene	3263202	3263277	.	-	.	ID=gene3022;Name=Y_RS15175;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS15175;old_locus_tag=yt057
NC_004088.1	tRNAscan-SE	tRNA	3263202	3263277	.	-	.	ID=rna74;Parent=gene3022;anticodon=(pos:complement(3263242..3263244));gbkey=tRNA;product=tRNA-Thr
NC_004088.1	tRNAscan-SE	exon	3263202	3263277	.	-	.	ID=id359;Parent=rna74;anticodon=(pos:complement(3263242..3263244));gbkey=tRNA;product=tRNA-Thr
NC_004088.1	RefSeq	gene	3263283	3263370	.	-	.	ID=gene3023;Name=Y_RS15180;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS15180;old_locus_tag=yt058
NC_004088.1	tRNAscan-SE	tRNA	3263283	3263370	.	-	.	ID=rna75;Parent=gene3023;anticodon=(pos:complement(3263334..3263336));gbkey=tRNA;product=tRNA-Ser
NC_004088.1	tRNAscan-SE	exon	3263283	3263370	.	-	.	ID=id360;Parent=rna75;anticodon=(pos:complement(3263334..3263336));gbkey=tRNA;product=tRNA-Ser
NC_004088.1	RefSeq	repeat_region	3263694	3264417	.	+	.	ID=id361;gbkey=repeat_region
NC_004088.1	RefSeq	region	3263698	3264407	.	-	.	ID=id362;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3263804	3264262	.	-	.	ID=gene3024;Name=Y_RS15185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15185;old_locus_tag=y2965
NC_004088.1	Protein Homology	CDS	3263804	3264262	.	-	0	ID=cds2942;Parent=gene3024;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	3264464	3265579	.	-	.	ID=gene3025;Name=Y_RS15190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15190;old_locus_tag=y2966
NC_004088.1	Protein Homology	CDS	3264464	3265579	.	-	0	ID=cds2943;Parent=gene3025;Dbxref=Genbank:WP_002210826.1;Name=WP_002210826.1;gbkey=CDS;product=porin;protein_id=WP_002210826.1;transl_table=11
NC_004088.1	RefSeq	gene	3266683	3267837	.	+	.	ID=gene3026;Name=Y_RS15200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15200;old_locus_tag=y2967
NC_004088.1	Protein Homology	CDS	3266683	3267837	.	+	0	ID=cds2944;Parent=gene3026;Dbxref=Genbank:WP_002210825.1;Name=WP_002210825.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002210825.1;transl_table=11
NC_004088.1	RefSeq	gene	3267936	3269813	.	+	.	ID=gene3027;Name=Y_RS15205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15205;old_locus_tag=y2968
NC_004088.1	Protein Homology	CDS	3267936	3269813	.	+	0	ID=cds2945;Parent=gene3027;Dbxref=Genbank:WP_002231290.1;Name=WP_002231290.1;gbkey=CDS;product=ATPase;protein_id=WP_002231290.1;transl_table=11
NC_004088.1	RefSeq	gene	3269981	3270553	.	+	.	ID=gene3028;Name=Y_RS15210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15210;old_locus_tag=y2969
NC_004088.1	Protein Homology	CDS	3269981	3270553	.	+	0	ID=cds2946;Parent=gene3028;Dbxref=Genbank:WP_002216094.1;Name=WP_002216094.1;gbkey=CDS;product=histidine phosphotransferase;protein_id=WP_002216094.1;transl_table=11
NC_004088.1	RefSeq	gene	3270556	3271209	.	+	.	ID=gene3029;Name=Y_RS15215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15215;old_locus_tag=y2970
NC_004088.1	Protein Homology	CDS	3270556	3271209	.	+	0	ID=cds2947;Parent=gene3029;Dbxref=Genbank:WP_002210824.1;Name=WP_002210824.1;Note=two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division%3B probably phosphorylated by RcsC or RcsF;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210824.1;transl_table=11
NC_004088.1	RefSeq	gene	3271277	3274057	.	-	.	ID=gene3030;Name=Y_RS15220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15220;old_locus_tag=y2971
NC_004088.1	Protein Homology	CDS	3271277	3274057	.	-	0	ID=cds2948;Parent=gene3030;Dbxref=Genbank:WP_002210823.1;Name=WP_002210823.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_002210823.1;transl_table=11
NC_004088.1	RefSeq	gene	3274210	3274335	.	-	.	ID=gene3031;Name=Y_RS15225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15225
NC_004088.1	Protein Homology	CDS	3274210	3274335	.	-	0	ID=cds2949;Parent=gene3031;Dbxref=Genbank:WP_002210822.1;Name=WP_002210822.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210822.1;transl_table=11
NC_004088.1	RefSeq	gene	3274338	3277013	.	-	.	ID=gene3032;Name=Y_RS15230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15230;old_locus_tag=y2972
NC_004088.1	Protein Homology	CDS	3274338	3277013	.	-	0	ID=cds2950;Parent=gene3032;Dbxref=Genbank:WP_002210821.1;Name=WP_002210821.1;gbkey=CDS;product=DNA gyrase subunit A;protein_id=WP_002210821.1;transl_table=11
NC_004088.1	RefSeq	gene	3277275	3278003	.	+	.	ID=gene3033;Name=Y_RS15235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15235;old_locus_tag=y2973
NC_004088.1	Protein Homology	CDS	3277275	3278003	.	+	0	ID=cds2951;Parent=gene3033;Dbxref=Genbank:WP_002210820.1;Name=WP_002210820.1;Note=Involved in ubiquinone biosynthesis;gbkey=CDS;product=ubiquinone biosynthesis O-methyltransferase;protein_id=WP_002210820.1;transl_table=11
NC_004088.1	RefSeq	gene	3278497	3280785	.	+	.	ID=gene3034;Name=Y_RS15240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15240;old_locus_tag=y2974
NC_004088.1	Protein Homology	CDS	3278497	3280785	.	+	0	ID=cds2952;Parent=gene3034;Dbxref=Genbank:WP_002210818.1;Name=WP_002210818.1;Note=Catalyzes the rate-limiting step in dNTP synthesis;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=WP_002210818.1;transl_table=11
NC_004088.1	RefSeq	gene	3280948	3282078	.	+	.	ID=gene3035;Name=Y_RS15245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15245;old_locus_tag=y2975
NC_004088.1	Protein Homology	CDS	3280948	3282078	.	+	0	ID=cds2953;Parent=gene3035;Dbxref=Genbank:WP_002210817.1;Name=WP_002210817.1;Note=B2 or R2 protein%3B type 1a enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdA;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_002210817.1;transl_table=11
NC_004088.1	RefSeq	gene	3282082	3282339	.	+	.	ID=gene3036;Name=Y_RS15250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15250;old_locus_tag=y2976
NC_004088.1	Protein Homology	CDS	3282082	3282339	.	+	0	ID=cds2954;Parent=gene3036;Dbxref=Genbank:WP_002210816.1;Name=WP_002210816.1;gbkey=CDS;product=(2Fe-2S) ferredoxin;protein_id=WP_002210816.1;transl_table=11
NC_004088.1	RefSeq	gene	3282374	3282883	.	+	.	ID=gene3037;Name=Y_RS15255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15255;old_locus_tag=y2977
NC_004088.1	Protein Homology	CDS	3282374	3282883	.	+	0	ID=cds2955;Parent=gene3037;Dbxref=Genbank:WP_002210815.1;Name=WP_002210815.1;Note=serine protease inhibitor%2C inhibits trypsin and other proteases;gbkey=CDS;product=ecotin;protein_id=WP_002210815.1;transl_table=11
NC_004088.1	RefSeq	gene	3282941	3284134	.	-	.	ID=gene3038;Name=Y_RS15260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15260;old_locus_tag=y2978
NC_004088.1	Protein Homology	CDS	3282941	3284134	.	-	0	ID=cds2956;Parent=gene3038;Dbxref=Genbank:WP_002210814.1;Name=WP_002210814.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210814.1;transl_table=11
NC_004088.1	RefSeq	gene	3284753	3285961	.	+	.	ID=gene3039;Name=Y_RS15265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15265;old_locus_tag=y2979
NC_004088.1	Protein Homology	CDS	3284753	3285961	.	+	0	ID=cds2957;Parent=gene3039;Dbxref=Genbank:WP_002221775.1;Name=WP_002221775.1;Note=tyrosine specific permease;gbkey=CDS;product=tyrosine transporter TyrP;protein_id=WP_002221775.1;transl_table=11
NC_004088.1	RefSeq	gene	3286218	3286760	.	-	.	ID=gene3040;Name=Y_RS15270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15270;old_locus_tag=y2980
NC_004088.1	Protein Homology	CDS	3286218	3286760	.	-	0	ID=cds2958;Parent=gene3040;Dbxref=Genbank:WP_002210812.1;Name=WP_002210812.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210812.1;transl_table=11
NC_004088.1	RefSeq	gene	3287118	3288560	.	+	.	ID=gene3041;Name=Y_RS15275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15275;old_locus_tag=y2981
NC_004088.1	Protein Homology	CDS	3287118	3288560	.	+	0	ID=cds2959;Parent=gene3041;Dbxref=Genbank:WP_002228030.1;Name=WP_002228030.1;gbkey=CDS;product=catalase;protein_id=WP_002228030.1;transl_table=11
NC_004088.1	RefSeq	gene	3288628	3290808	.	-	.	ID=gene3042;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=Y_RS15280;old_locus_tag=y2982
NC_004088.1	Protein Homology	CDS	3288628	3290808	.	-	0	ID=cds2960;Parent=gene3042;Dbxref=Genbank:WP_002210810.1;Name=WP_002210810.1;Note=helicase involved in DNA repair and perhaps also replication;gbkey=CDS;gene=dinG;product=ATP-dependent DNA helicase DinG;protein_id=WP_002210810.1;transl_table=11
NC_004088.1	RefSeq	gene	3291078	3292193	.	+	.	ID=gene3043;Name=Y_RS15285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15285;old_locus_tag=y2983
NC_004088.1	Protein Homology	CDS	3291078	3292193	.	+	0	ID=cds2961;Parent=gene3043;Dbxref=Genbank:WP_002231293.1;Name=WP_002231293.1;gbkey=CDS;product=phosphoporin protein E;protein_id=WP_002231293.1;transl_table=11
NC_004088.1	RefSeq	gene	3292605	3293495	.	+	.	ID=gene3044;Name=Y_RS15290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15290;old_locus_tag=y2985
NC_004088.1	Protein Homology	CDS	3292605	3293495	.	+	0	ID=cds2962;Parent=gene3044;Dbxref=Genbank:WP_002210807.1;Name=WP_002210807.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_002210807.1;transl_table=11
NC_004088.1	RefSeq	gene	3293620	3293823	.	+	.	ID=gene3045;Name=Y_RS15295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15295;old_locus_tag=y2986
NC_004088.1	Protein Homology	CDS	3293620	3293823	.	+	0	ID=cds2963;Parent=gene3045;Dbxref=Genbank:WP_002210806.1;Name=WP_002210806.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210806.1;transl_table=11
NC_004088.1	RefSeq	gene	3293941	3296247	.	-	.	ID=gene3046;Name=Y_RS15300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15300;old_locus_tag=y2987
NC_004088.1	Protein Homology	CDS	3293941	3296247	.	-	0	ID=cds2964;Parent=gene3046;Dbxref=Genbank:WP_002210805.1;Name=WP_002210805.1;Note=biodegradative%3B catalyzes the formation of agmatine from arginine;gbkey=CDS;product=arginine decarboxylase;protein_id=WP_002210805.1;transl_table=11
NC_004088.1	RefSeq	gene	3296317	3297651	.	-	.	ID=gene3047;Name=Y_RS15305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15305;old_locus_tag=y2988
NC_004088.1	Protein Homology	CDS	3296317	3297651	.	-	0	ID=cds2965;Parent=gene3047;Dbxref=Genbank:WP_002210804.1;Name=WP_002210804.1;gbkey=CDS;product=arginine/agmatine antiporter;protein_id=WP_002210804.1;transl_table=11
NC_004088.1	RefSeq	gene	3298135	3298971	.	-	.	ID=gene3048;Name=Y_RS15310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15310;old_locus_tag=y2990
NC_004088.1	Protein Homology	CDS	3298135	3298971	.	-	0	ID=cds2966;Parent=gene3048;Dbxref=Genbank:WP_002210803.1;Name=WP_002210803.1;gbkey=CDS;product=osmoprotectant uptake system permease;protein_id=WP_002210803.1;transl_table=11
NC_004088.1	RefSeq	gene	3298968	3299906	.	-	.	ID=gene3049;Name=Y_RS15315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15315;old_locus_tag=y2991
NC_004088.1	Protein Homology	CDS	3298968	3299906	.	-	0	ID=cds2967;Parent=gene3049;Dbxref=Genbank:WP_002210802.1;Name=WP_002210802.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002210802.1;transl_table=11
NC_004088.1	RefSeq	gene	3299903	3301057	.	-	.	ID=gene3050;Name=Y_RS15320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15320;old_locus_tag=y2992
NC_004088.1	Protein Homology	CDS	3299903	3301057	.	-	0	ID=cds2968;Parent=gene3050;Dbxref=Genbank:WP_002210801.1;Name=WP_002210801.1;gbkey=CDS;product=osmoprotectant uptake system permease;protein_id=WP_002210801.1;transl_table=11
NC_004088.1	RefSeq	gene	3301318	3301638	.	-	.	ID=gene3051;Name=Y_RS15325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15325
NC_004088.1	Protein Homology	CDS	3301318	3301638	.	-	0	ID=cds2969;Parent=gene3051;Dbxref=Genbank:WP_002214181.1;Name=WP_002214181.1;gbkey=CDS;product=glycine/betaine ABC transporter substrate-binding protein;protein_id=WP_002214181.1;transl_table=11
NC_004088.1	RefSeq	gene	3301783	3302250	.	-	.	ID=gene3052;Name=Y_RS15330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15330;old_locus_tag=y2994
NC_004088.1	Protein Homology	CDS	3301783	3302250	.	-	0	ID=cds2970;Parent=gene3052;Dbxref=Genbank:WP_002214183.1;Name=WP_002214183.1;gbkey=CDS;product=glycine/betaine ABC transporter substrate-binding protein;protein_id=WP_002214183.1;transl_table=11
NC_004088.1	RefSeq	gene	3302986	3303840	.	+	.	ID=gene3053;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=Y_RS15335;old_locus_tag=y2995
NC_004088.1	Protein Homology	CDS	3302986	3303840	.	+	0	ID=cds2971;Parent=gene3053;Dbxref=Genbank:WP_002210799.1;Name=WP_002210799.1;Note=catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds;gbkey=CDS;gene=sseA;product=3-mercaptopyruvate sulfurtransferase;protein_id=WP_002210799.1;transl_table=11
NC_004088.1	RefSeq	gene	3304002	3305417	.	-	.	ID=gene3054;Name=Y_RS15340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15340;old_locus_tag=y2996
NC_004088.1	Protein Homology	CDS	3304002	3305417	.	-	0	ID=cds2972;Parent=gene3054;Dbxref=Genbank:WP_002210798.1;Name=WP_002210798.1;gbkey=CDS;product=amino acid decarboxylase;protein_id=WP_002210798.1;transl_table=11
NC_004088.1	RefSeq	gene	3305441	3306298	.	-	.	ID=gene3055;Name=Y_RS15345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15345;old_locus_tag=y2997
NC_004088.1	Protein Homology	CDS	3305441	3306298	.	-	0	ID=cds2973;Parent=gene3055;Dbxref=Genbank:WP_002210797.1;Name=WP_002210797.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210797.1;transl_table=11
NC_004088.1	RefSeq	gene	3306413	3307111	.	-	.	ID=gene3056;Name=Y_RS15350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15350;old_locus_tag=y2998
NC_004088.1	Protein Homology	CDS	3306413	3307111	.	-	0	ID=cds2974;Parent=gene3056;Dbxref=Genbank:WP_002223523.1;Name=WP_002223523.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002223523.1;transl_table=11
NC_004088.1	RefSeq	gene	3307205	3308041	.	-	.	ID=gene3057;Name=Y_RS15355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15355;old_locus_tag=y2999
NC_004088.1	Protein Homology	CDS	3307205	3308041	.	-	0	ID=cds2975;Parent=gene3057;Dbxref=Genbank:WP_002210795.1;Name=WP_002210795.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_002210795.1;transl_table=11
NC_004088.1	RefSeq	gene	3308038	3309114	.	-	.	ID=gene3058;Name=Y_RS15360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15360;old_locus_tag=y3000
NC_004088.1	Protein Homology	CDS	3308038	3309114	.	-	0	ID=cds2976;Parent=gene3058;Dbxref=Genbank:WP_002210794.1;Name=WP_002210794.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_002210794.1;transl_table=11
NC_004088.1	RefSeq	gene	3309114	3310715	.	-	.	ID=gene3059;Name=Y_RS15365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15365;old_locus_tag=y3001
NC_004088.1	Protein Homology	CDS	3309114	3310715	.	-	0	ID=cds2977;Parent=gene3059;Dbxref=Genbank:WP_002210793.1;Name=WP_002210793.1;gbkey=CDS;product=urea ABC transporter permease;protein_id=WP_002210793.1;transl_table=11
NC_004088.1	RefSeq	gene	3310839	3312107	.	-	.	ID=gene3060;Name=Y_RS15370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15370;old_locus_tag=y3002
NC_004088.1	Protein Homology	CDS	3310839	3312107	.	-	0	ID=cds2978;Parent=gene3060;Dbxref=Genbank:WP_002210792.1;Name=WP_002210792.1;gbkey=CDS;product=branched-chain amino acid ABC transporter substrate-binding protein;protein_id=WP_002210792.1;transl_table=11
NC_004088.1	RefSeq	gene	3312668	3313141	.	-	.	ID=gene3061;Name=Y_RS15375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15375;old_locus_tag=y3003
NC_004088.1	Protein Homology	CDS	3312668	3313141	.	-	0	ID=cds2979;Parent=gene3061;Dbxref=Genbank:WP_002210791.1;Name=WP_002210791.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210791.1;transl_table=11
NC_004088.1	RefSeq	gene	3313387	3314268	.	-	.	ID=gene3062;Name=Y_RS15380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15380;old_locus_tag=y3004
NC_004088.1	Protein Homology	CDS	3313387	3314268	.	-	0	ID=cds2980;Parent=gene3062;Dbxref=Genbank:WP_002210790.1;Name=WP_002210790.1;gbkey=CDS;product=phosphonate ABC transporter permease;protein_id=WP_002210790.1;transl_table=11
NC_004088.1	RefSeq	gene	3314271	3315131	.	-	.	ID=gene3063;Name=Y_RS15385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15385;old_locus_tag=y3005
NC_004088.1	Protein Homology	CDS	3314271	3315131	.	-	0	ID=cds2981;Parent=gene3063;Dbxref=Genbank:WP_002210789.1;Name=WP_002210789.1;gbkey=CDS;product=phosphonate ABC transporter permease;protein_id=WP_002210789.1;transl_table=11
NC_004088.1	RefSeq	gene	3315234	3316163	.	-	.	ID=gene3064;Name=Y_RS15390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15390;old_locus_tag=y3006
NC_004088.1	Protein Homology	CDS	3315234	3316163	.	-	0	ID=cds2982;Parent=gene3064;Dbxref=Genbank:WP_002210788.1;Name=WP_002210788.1;gbkey=CDS;product=phosphonate ABC transporter substrate-binding protein;protein_id=WP_002210788.1;transl_table=11
NC_004088.1	RefSeq	gene	3316200	3317036	.	-	.	ID=gene3065;Name=Y_RS15395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15395;old_locus_tag=y3007
NC_004088.1	Protein Homology	CDS	3316200	3317036	.	-	0	ID=cds2983;Parent=gene3065;Dbxref=Genbank:WP_002210787.1;Name=WP_002210787.1;gbkey=CDS;product=phosphonates import ATP-binding protein PhnC;protein_id=WP_002210787.1;transl_table=11
NC_004088.1	RefSeq	gene	3317244	3317492	.	-	.	ID=gene3066;Name=Y_RS15400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15400
NC_004088.1	Protein Homology	CDS	3317244	3317492	.	-	0	ID=cds2984;Parent=gene3066;Dbxref=Genbank:WP_002210786.1;Name=WP_002210786.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210786.1;transl_table=11
NC_004088.1	RefSeq	gene	3317677	3318780	.	-	.	ID=gene3067;Name=Y_RS15405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15405;old_locus_tag=y3008
NC_004088.1	Protein Homology	CDS	3317677	3318780	.	-	0	ID=cds2985;Parent=gene3067;Dbxref=Genbank:WP_002210785.1;Name=WP_002210785.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210785.1;transl_table=11
NC_004088.1	RefSeq	gene	3319093	3319434	.	+	.	ID=gene3068;Name=Y_RS15410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15410;old_locus_tag=y3010
NC_004088.1	Protein Homology	CDS	3319093	3319434	.	+	0	ID=cds2986;Parent=gene3068;Dbxref=Genbank:WP_002214185.1;Name=WP_002214185.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214185.1;transl_table=11
NC_004088.1	RefSeq	gene	3319460	3319999	.	-	.	ID=gene3069;Name=Y_RS15415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15415;old_locus_tag=y3011
NC_004088.1	Protein Homology	CDS	3319460	3319999	.	-	0	ID=cds2987;Parent=gene3069;Dbxref=Genbank:WP_002210782.1;Name=WP_002210782.1;gbkey=CDS;product=adenylate cyclase;protein_id=WP_002210782.1;transl_table=11
NC_004088.1	RefSeq	gene	3320209	3321921	.	+	.	ID=gene3070;Name=Y_RS15420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15420;old_locus_tag=y3012
NC_004088.1	Protein Homology	CDS	3320209	3321921	.	+	0	ID=cds2988;Parent=gene3070;Dbxref=Genbank:WP_002210781.1;Name=WP_002210781.1;Note=component of the membrane-bound D-lactate oxidase%2C FAD-binding%2C NADH independent;gbkey=CDS;product=lactate dehydrogenase;protein_id=WP_002210781.1;transl_table=11
NC_004088.1	RefSeq	gene	3322042	3322977	.	-	.	ID=gene3071;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=Y_RS15425;old_locus_tag=y3013
NC_004088.1	Protein Homology	CDS	3322042	3322977	.	-	0	ID=cds2989;Parent=gene3071;Dbxref=Genbank:WP_002210780.1;Name=WP_002210780.1;Note=specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi%3B Penicillin-binding protein 7;gbkey=CDS;gene=pbpG;product=D-alanyl-D-alanine endopeptidase;protein_id=WP_002210780.1;transl_table=11
NC_004088.1	RefSeq	gene	3323316	3323495	.	+	.	ID=gene3072;Name=Y_RS15430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15430;old_locus_tag=y3014
NC_004088.1	Protein Homology	CDS	3323316	3323495	.	+	0	ID=cds2990;Parent=gene3072;Dbxref=Genbank:WP_002210778.1;Name=WP_002210778.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210778.1;transl_table=11
NC_004088.1	RefSeq	gene	3323569	3324507	.	-	.	ID=gene3073;Name=Y_RS15435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15435;old_locus_tag=y3015
NC_004088.1	Protein Homology	CDS	3323569	3324507	.	-	0	ID=cds2991;Parent=gene3073;Dbxref=Genbank:WP_002228612.1;Name=WP_002228612.1;gbkey=CDS;product=tRNA-dihydrouridine synthase C;protein_id=WP_002228612.1;transl_table=11
NC_004088.1	RefSeq	gene	3324807	3325736	.	-	.	ID=gene3074;Name=Y_RS15440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15440;old_locus_tag=y3016
NC_004088.1	Protein Homology	CDS	3324807	3325736	.	-	0	ID=cds2992;Parent=gene3074;Dbxref=Genbank:WP_002210776.1;Name=WP_002210776.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210776.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3326039	3326762	.	+	.	ID=id363;gbkey=repeat_region
NC_004088.1	RefSeq	region	3326045	3326754	.	-	.	ID=id364;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3326151	3326609	.	-	.	ID=gene3075;Name=Y_RS15445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15445;old_locus_tag=y3017
NC_004088.1	Protein Homology	CDS	3326151	3326609	.	-	0	ID=cds2993;Parent=gene3075;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	3326599	3326769	.	-	.	ID=gene3076;Name=Y_RS15450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15450
NC_004088.1	Protein Homology	CDS	3326599	3326769	.	-	0	ID=cds2994;Parent=gene3076;Dbxref=Genbank:WP_025470755.1;Name=WP_025470755.1;gbkey=CDS;product=transposase;protein_id=WP_025470755.1;transl_table=11
NC_004088.1	RefSeq	gene	3326844	3327554	.	-	.	ID=gene3077;Name=Y_RS15455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15455;old_locus_tag=y3018
NC_004088.1	Protein Homology	CDS	3326844	3327554	.	-	0	ID=cds2995;Parent=gene3077;Dbxref=Genbank:WP_002210775.1;Name=WP_002210775.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210775.1;transl_table=11
NC_004088.1	RefSeq	gene	3327697	3328149	.	-	.	ID=gene3078;Name=Y_RS15460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15460;old_locus_tag=y3019
NC_004088.1	Protein Homology	CDS	3327697	3328149	.	-	0	ID=cds2996;Parent=gene3078;Dbxref=Genbank:WP_002210774.1;Name=WP_002210774.1;gbkey=CDS;product=molybdopterin guanine dinucleotide biosynthesis protein MoaE;protein_id=WP_002210774.1;transl_table=11
NC_004088.1	RefSeq	gene	3328152	3328397	.	-	.	ID=gene3079;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=Y_RS15465;old_locus_tag=y3020
NC_004088.1	Protein Homology	CDS	3328152	3328397	.	-	0	ID=cds2997;Parent=gene3079;Dbxref=Genbank:WP_002210773.1;Name=WP_002210773.1;Note=catalyzes the conversion of molybdopterin precursor Z into molybdopterin;gbkey=CDS;gene=moaD;product=molybdopterin synthase small subunit;protein_id=WP_002210773.1;transl_table=11
NC_004088.1	RefSeq	gene	3328394	3328873	.	-	.	ID=gene3080;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=Y_RS15470;old_locus_tag=y3021
NC_004088.1	Protein Homology	CDS	3328394	3328873	.	-	0	ID=cds2998;Parent=gene3080;Dbxref=Genbank:WP_002210772.1;Name=WP_002210772.1;Note=MoaC%3B along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z%3B involved in molybdenum cofactor biosynthesis;gbkey=CDS;gene=moaC;product=cyclic pyranopterin monophosphate synthase accessory protein;protein_id=WP_002210772.1;transl_table=11
NC_004088.1	RefSeq	gene	3328974	3329954	.	-	.	ID=gene3081;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=Y_RS15475;old_locus_tag=y3023
NC_004088.1	Protein Homology	CDS	3328974	3329954	.	-	0	ID=cds2999;Parent=gene3081;Dbxref=Genbank:WP_002210771.1;Name=WP_002210771.1;Note=together with moaC%2C is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z;gbkey=CDS;gene=moaA;product=cyclic pyranopterin monophosphate synthase;protein_id=WP_002210771.1;transl_table=11
NC_004088.1	RefSeq	gene	3330206	3330352	.	+	.	ID=gene3082;Name=Y_RS15480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15480
NC_004088.1	Protein Homology	CDS	3330206	3330352	.	+	0	ID=cds3000;Parent=gene3082;Dbxref=Genbank:WP_002210770.1;Name=WP_002210770.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210770.1;transl_table=11
NC_004088.1	RefSeq	gene	3330486	3331409	.	+	.	ID=gene3083;Name=Y_RS15485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15485;old_locus_tag=y3024
NC_004088.1	Protein Homology	CDS	3330486	3331409	.	+	0	ID=cds3001;Parent=gene3083;Dbxref=Genbank:WP_002210769.1;Name=WP_002210769.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210769.1;transl_table=11
NC_004088.1	RefSeq	gene	3331540	3331785	.	-	.	ID=gene3084;Name=Y_RS15490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15490;old_locus_tag=y3025
NC_004088.1	Protein Homology	CDS	3331540	3331785	.	-	0	ID=cds3002;Parent=gene3084;Dbxref=Genbank:WP_002210768.1;Name=WP_002210768.1;gbkey=CDS;product=transporter;protein_id=WP_002210768.1;transl_table=11
NC_004088.1	RefSeq	gene	3332077	3334092	.	-	.	ID=gene3085;Name=Y_RS15495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15495;old_locus_tag=y3026
NC_004088.1	Protein Homology	CDS	3332077	3334092	.	-	0	ID=cds3003;Parent=gene3085;Dbxref=Genbank:WP_002210767.1;Name=WP_002210767.1;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion;gbkey=CDS;product=UvrABC system protein B;protein_id=WP_002210767.1;transl_table=11
NC_004088.1	RefSeq	gene	3335182	3335892	.	+	.	ID=gene3086;Name=Y_RS15500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15500;old_locus_tag=y3027
NC_004088.1	Protein Homology	CDS	3335182	3335892	.	+	0	ID=cds3004;Parent=gene3086;Dbxref=Genbank:WP_002210766.1;Name=WP_002210766.1;gbkey=CDS;product=amino acid transporter;protein_id=WP_002210766.1;transl_table=11
NC_004088.1	RefSeq	gene	3336044	3336766	.	-	.	ID=gene3087;Name=Y_RS15505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15505;old_locus_tag=y3028
NC_004088.1	Protein Homology	CDS	3336044	3336766	.	-	0	ID=cds3005;Parent=gene3087;Dbxref=Genbank:WP_002216554.1;Name=WP_002216554.1;gbkey=CDS;product=dithiobiotin synthetase;protein_id=WP_002216554.1;transl_table=11
NC_004088.1	RefSeq	gene	3336759	3337562	.	-	.	ID=gene3088;Name=Y_RS15510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15510;old_locus_tag=y3029
NC_004088.1	Protein Homology	CDS	3336759	3337562	.	-	0	ID=cds3006;Parent=gene3088;Dbxref=Genbank:WP_002210764.1;Name=WP_002210764.1;Note=methyltransferase%3B acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA%2C a biotin precursor%3B member of the bio operon (bioABFCD)%3B in Escherichia coli%2C bioC-null mutants require biotin for growth;gbkey=CDS;product=malonyl-[acyl-carrier protein] O-methyltransferase BioC;protein_id=WP_002210764.1;transl_table=11
NC_004088.1	RefSeq	gene	3337546	3338697	.	-	.	ID=gene3089;Name=Y_RS15515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15515;old_locus_tag=y3030
NC_004088.1	Protein Homology	CDS	3337546	3338697	.	-	0	ID=cds3007;Parent=gene3089;Dbxref=Genbank:WP_002210763.1;Name=WP_002210763.1;Note=catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine;gbkey=CDS;product=8-amino-7-oxononanoate synthase;protein_id=WP_002210763.1;transl_table=11
NC_004088.1	RefSeq	gene	3338697	3339734	.	-	.	ID=gene3090;Name=Y_RS15520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15520;old_locus_tag=y3031
NC_004088.1	Protein Homology	CDS	3338697	3339734	.	-	0	ID=cds3008;Parent=gene3090;Dbxref=Genbank:WP_002210762.1;Name=WP_002210762.1;Note=catalyzes the formation of biotin from dethiobiotin;gbkey=CDS;product=biotin synthase;protein_id=WP_002210762.1;transl_table=11
NC_004088.1	RefSeq	gene	3339833	3341113	.	+	.	ID=gene3091;Name=Y_RS15525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15525;old_locus_tag=y3032
NC_004088.1	Protein Homology	CDS	3339833	3341113	.	+	0	ID=cds3009;Parent=gene3091;Dbxref=Genbank:WP_002220188.1;Name=WP_002220188.1;gbkey=CDS;product=adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA;protein_id=WP_002220188.1;transl_table=11
NC_004088.1	RefSeq	gene	3341298	3342302	.	-	.	ID=gene3092;Name=Y_RS15530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15530;old_locus_tag=y3033
NC_004088.1	Protein Homology	CDS	3341298	3342302	.	-	0	ID=cds3010;Parent=gene3092;Dbxref=Genbank:WP_002210760.1;Name=WP_002210760.1;Note=catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate;gbkey=CDS;product=6-phosphogluconolactonase;protein_id=WP_002210760.1;transl_table=11
NC_004088.1	RefSeq	gene	3342593	3343414	.	+	.	ID=gene3093;Name=Y_RS15535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15535;old_locus_tag=y3034
NC_004088.1	Protein Homology	CDS	3342593	3343414	.	+	0	ID=cds3011;Parent=gene3093;Dbxref=Genbank:WP_002210759.1;Name=WP_002210759.1;gbkey=CDS;product=pyridoxal phosphate phosphatase;protein_id=WP_002210759.1;transl_table=11
NC_004088.1	RefSeq	gene	3343470	3344549	.	-	.	ID=gene3094;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=Y_RS15540;old_locus_tag=y3035
NC_004088.1	Protein Homology	CDS	3343470	3344549	.	-	0	ID=cds3012;Parent=gene3094;Dbxref=Genbank:WP_002210758.1;Name=WP_002210758.1;Note=Part of the ABC transporter complex modABC involved in molybdenum import;gbkey=CDS;gene=modC;product=molybdenum import ATP-binding protein ModC;protein_id=WP_002210758.1;transl_table=11
NC_004088.1	RefSeq	gene	3344543	3345238	.	-	.	ID=gene3095;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;gene_synonym=chlJ;locus_tag=Y_RS15545;old_locus_tag=y3036
NC_004088.1	Protein Homology	CDS	3344543	3345238	.	-	0	ID=cds3013;Parent=gene3095;Dbxref=Genbank:WP_002210757.1;Name=WP_002210757.1;Note=part of ModCBA molybdate transporter%3B member of ABC superfamily%3B inner membrane component%3B regulated by repressor protein ModE;gbkey=CDS;gene=modB;product=molybdate ABC transporter permease;protein_id=WP_002210757.1;transl_table=11
NC_004088.1	RefSeq	gene	3345238	3346017	.	-	.	ID=gene3096;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=Y_RS15550;old_locus_tag=y3037
NC_004088.1	Protein Homology	CDS	3345238	3346017	.	-	0	ID=cds3014;Parent=gene3096;Dbxref=Genbank:WP_002210756.1;Name=WP_002210756.1;Note=with ModCB is involved in the high-affinity transport of molybdate;gbkey=CDS;gene=modA;product=molybdenum ABC transporter substrate-binding protein;protein_id=WP_002210756.1;transl_table=11
NC_004088.1	RefSeq	gene	3346252	3346404	.	-	.	ID=gene3097;Name=Y_RS15555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15555;old_locus_tag=y3038
NC_004088.1	Protein Homology	CDS	3346252	3346404	.	-	0	ID=cds3015;Parent=gene3097;Dbxref=Genbank:WP_002217291.1;Name=WP_002217291.1;gbkey=CDS;product=membrane protein;protein_id=WP_002217291.1;transl_table=11
NC_004088.1	RefSeq	gene	3346687	3347478	.	+	.	ID=gene3098;Name=Y_RS15560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15560;old_locus_tag=y3040
NC_004088.1	Protein Homology	CDS	3346687	3347478	.	+	0	ID=cds3016;Parent=gene3098;Dbxref=Genbank:WP_002210754.1;Name=WP_002210754.1;Note=represses the modABCD operon and activates the moaABCD and napFDAGHBC operons;gbkey=CDS;product=transcriptional regulator ModE;protein_id=WP_002210754.1;transl_table=11
NC_004088.1	RefSeq	gene	3347588	3349078	.	+	.	ID=gene3099;Name=Y_RS15565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15565;old_locus_tag=y3041
NC_004088.1	Protein Homology	CDS	3347588	3349078	.	+	0	ID=cds3017;Parent=gene3099;Dbxref=Genbank:WP_002210753.1;Name=WP_002210753.1;Note=contains 2 ATP-binding cassettes%3B involved in the transport of molybdenum;gbkey=CDS;product=molybdenum ABC transporter ATP-binding protein;protein_id=WP_002210753.1;transl_table=11
NC_004088.1	RefSeq	gene	3349112	3349240	.	+	.	ID=gene3100;Name=Y_RS15570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15570
NC_004088.1	Protein Homology	CDS	3349112	3349240	.	+	0	ID=cds3018;Parent=gene3100;Dbxref=Genbank:WP_002210752.1;Name=WP_002210752.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210752.1;transl_table=11
NC_004088.1	RefSeq	gene	3349295	3350113	.	+	.	ID=gene3101;Name=Y_RS15575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15575;old_locus_tag=y3042
NC_004088.1	Protein Homology	CDS	3349295	3350113	.	+	0	ID=cds3019;Parent=gene3101;Dbxref=Genbank:WP_002210751.1;Name=WP_002210751.1;gbkey=CDS;product=CAAX amino protease;protein_id=WP_002210751.1;transl_table=11
NC_004088.1	RefSeq	gene	3350473	3351489	.	+	.	ID=gene3102;Name=Y_RS15580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15580;old_locus_tag=y3043
NC_004088.1	Protein Homology	CDS	3350473	3351489	.	+	0	ID=cds3020;Parent=gene3102;Dbxref=Genbank:WP_002210750.1;Name=WP_002210750.1;gbkey=CDS;product=UDP-glucose 4-epimerase;protein_id=WP_002210750.1;transl_table=11
NC_004088.1	RefSeq	gene	3351499	3352551	.	+	.	ID=gene3103;Name=Y_RS15585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15585;old_locus_tag=y3044
NC_004088.1	Protein Homology	CDS	3351499	3352551	.	+	0	ID=cds3021;Parent=gene3103;Dbxref=Genbank:WP_002210749.1;Name=WP_002210749.1;Note=catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P;gbkey=CDS;product=galactose-1-phosphate uridylyltransferase;protein_id=WP_002210749.1;transl_table=11
NC_004088.1	RefSeq	gene	3352548	3353699	.	+	.	ID=gene3104;Name=Y_RS15590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15590;old_locus_tag=y3045
NC_004088.1	Protein Homology	CDS	3352548	3353699	.	+	0	ID=cds3022;Parent=gene3104;Dbxref=Genbank:WP_002210748.1;Name=WP_002210748.1;Note=catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism;gbkey=CDS;product=galactokinase;protein_id=WP_002210748.1;transl_table=11
NC_004088.1	RefSeq	gene	3353693	3353845	.	+	.	ID=gene3105;Name=Y_RS15595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15595
NC_004088.1	Protein Homology	CDS	3353693	3353845	.	+	0	ID=cds3023;Parent=gene3105;Dbxref=Genbank:WP_002216814.1;Name=WP_002216814.1;gbkey=CDS;product=aldose 1-epimerase;protein_id=WP_002216814.1;transl_table=11
NC_004088.1	RefSeq	gene	3353866	3354762	.	+	.	ID=gene3106;Name=galM;gbkey=Gene;gene=galM;gene_biotype=protein_coding;locus_tag=Y_RS15600
NC_004088.1	Protein Homology	CDS	3353866	3354762	.	+	0	ID=cds3024;Parent=gene3106;Dbxref=Genbank:WP_002216812.1;Name=WP_002216812.1;Note=mutarotase%3B catalyzes the conversion of beta-galactose to the alpha-anomer%3B links the metabolism of lactose and galactose;gbkey=CDS;gene=galM;product=galactose-1-epimerase;protein_id=WP_002216812.1;transl_table=11
NC_004088.1	RefSeq	gene	3355055	3355390	.	+	.	ID=gene3107;Name=Y_RS15605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15605;old_locus_tag=y3047
NC_004088.1	Protein Homology	CDS	3355055	3355390	.	+	0	ID=cds3025;Parent=gene3107;Dbxref=Genbank:WP_002210747.1;Name=WP_002210747.1;gbkey=CDS;product=phosphate-starvation-inducible protein PsiF;protein_id=WP_002210747.1;transl_table=11
NC_004088.1	RefSeq	gene	3355737	3356489	.	+	.	ID=gene3108;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=Y_RS15610;old_locus_tag=y3048
NC_004088.1	Protein Homology	CDS	3355737	3356489	.	+	0	ID=cds3026;Parent=gene3108;Dbxref=Genbank:WP_002210746.1;Name=WP_002210746.1;Note=2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate;gbkey=CDS;gene=gpmA;product=2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_002210746.1;transl_table=11
NC_004088.1	RefSeq	gene	3356671	3357723	.	-	.	ID=gene3109;Name=Y_RS15615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15615;old_locus_tag=y3049
NC_004088.1	Protein Homology	CDS	3356671	3357723	.	-	0	ID=cds3027;Parent=gene3109;Dbxref=Genbank:WP_002223549.1;Name=WP_002223549.1;Note=catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=WP_002223549.1;transl_table=11
NC_004088.1	RefSeq	gene	3358172	3359110	.	+	.	ID=gene3110;Name=Y_RS15620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15620;old_locus_tag=y3050
NC_004088.1	Protein Homology	CDS	3358172	3359110	.	+	0	ID=cds3028;Parent=gene3110;Dbxref=Genbank:WP_002210743.1;Name=WP_002210743.1;Note=involved in zinc efflux across the cytoplasmic membrane;gbkey=CDS;product=zinc transporter ZitB;protein_id=WP_002210743.1;transl_table=11
NC_004088.1	RefSeq	gene	3359225	3359950	.	-	.	ID=gene3111;Name=Y_RS15625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15625;old_locus_tag=y3051
NC_004088.1	Protein Homology	CDS	3359225	3359950	.	-	0	ID=cds3029;Parent=gene3111;Dbxref=Genbank:WP_002210742.1;Name=WP_002210742.1;Note=involved in nicotinamide riboside transport;gbkey=CDS;product=nicotinamide riboside transporter PnuC;protein_id=WP_002210742.1;transl_table=11
NC_004088.1	RefSeq	gene	3360072	3361133	.	-	.	ID=gene3112;Name=Y_RS15630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15630;old_locus_tag=y3052
NC_004088.1	Protein Homology	CDS	3360072	3361133	.	-	0	ID=cds3030;Parent=gene3112;Dbxref=Genbank:WP_002210741.1;Name=WP_002210741.1;Note=3 different subfamilies%3B catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate;gbkey=CDS;product=quinolinate synthase A;protein_id=WP_002210741.1;transl_table=11
NC_004088.1	RefSeq	gene	3361210	3361452	.	+	.	ID=gene3113;Name=Y_RS15635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15635
NC_004088.1	Protein Homology	CDS	3361210	3361452	.	+	0	ID=cds3031;Parent=gene3113;Dbxref=Genbank:WP_002217022.1;Name=WP_002217022.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217022.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3361515	3361778	.	+	.	ID=id365;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3361600	3361675	.	-	.	ID=gene3114;Name=Y_RS15640;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS15640;old_locus_tag=yt060
NC_004088.1	tRNAscan-SE	tRNA	3361600	3361675	.	-	.	ID=rna76;Parent=gene3114;anticodon=(pos:complement(3361640..3361642));gbkey=tRNA;product=tRNA-Lys
NC_004088.1	tRNAscan-SE	exon	3361600	3361675	.	-	.	ID=id366;Parent=rna76;anticodon=(pos:complement(3361640..3361642));gbkey=tRNA;product=tRNA-Lys
NC_004088.1	RefSeq	gene	3361703	3361778	.	-	.	ID=gene3115;Name=Y_RS15645;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS15645;old_locus_tag=yt061
NC_004088.1	tRNAscan-SE	tRNA	3361703	3361778	.	-	.	ID=rna77;Parent=gene3115;anticodon=(pos:complement(3361743..3361745));gbkey=tRNA;product=tRNA-Lys
NC_004088.1	tRNAscan-SE	exon	3361703	3361778	.	-	.	ID=id367;Parent=rna77;anticodon=(pos:complement(3361743..3361745));gbkey=tRNA;product=tRNA-Lys
NC_004088.1	RefSeq	gene	3361969	3362778	.	-	.	ID=gene3116;Name=Y_RS15650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15650;old_locus_tag=y3053
NC_004088.1	Protein Homology	CDS	3361969	3362778	.	-	0	ID=cds3032;Parent=gene3116;Dbxref=Genbank:WP_002220051.1;Name=WP_002220051.1;Note=periplasmic protein that interacts with TolA%3B the tol-pal system is probably involved in maintaining cell envelope integrity;gbkey=CDS;product=tol-pal system protein YbgF;protein_id=WP_002220051.1;transl_table=11
NC_004088.1	RefSeq	gene	3362788	3363294	.	-	.	ID=gene3117;Name=Y_RS15655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15655;old_locus_tag=y3054
NC_004088.1	Protein Homology	CDS	3362788	3363294	.	-	0	ID=cds3033;Parent=gene3117;Dbxref=Genbank:WP_002210739.1;Name=WP_002210739.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210739.1;transl_table=11
NC_004088.1	RefSeq	gene	3363345	3364637	.	-	.	ID=gene3118;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=Y_RS15660;old_locus_tag=y3055
NC_004088.1	Protein Homology	CDS	3363345	3364637	.	-	0	ID=cds3034;Parent=gene3118;Dbxref=Genbank:WP_002210738.1;Name=WP_002210738.1;Note=forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA;gbkey=CDS;gene=tolB;product=protein TolB;protein_id=WP_002210738.1;transl_table=11
NC_004088.1	RefSeq	gene	3364757	3365923	.	-	.	ID=gene3119;Name=Y_RS15665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15665;old_locus_tag=y3056
NC_004088.1	Protein Homology	CDS	3364757	3365923	.	-	0	ID=cds3035;Parent=gene3119;Dbxref=Genbank:WP_002210737.1;Name=WP_002210737.1;gbkey=CDS;product=cell envelope integrity/translocation protein TolA;protein_id=WP_002210737.1;transl_table=11
NC_004088.1	RefSeq	gene	3366035	3366463	.	-	.	ID=gene3120;Name=Y_RS15670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15670;old_locus_tag=y3057
NC_004088.1	Protein Homology	CDS	3366035	3366463	.	-	0	ID=cds3036;Parent=gene3120;Dbxref=Genbank:WP_002210736.1;Name=WP_002210736.1;Note=membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins;gbkey=CDS;product=colicin transporter;protein_id=WP_002210736.1;transl_table=11
NC_004088.1	RefSeq	gene	3366476	3367162	.	-	.	ID=gene3121;Name=Y_RS15675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15675;old_locus_tag=y3058
NC_004088.1	Protein Homology	CDS	3366476	3367162	.	-	0	ID=cds3037;Parent=gene3121;Dbxref=Genbank:WP_002210735.1;Name=WP_002210735.1;Note=membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins;gbkey=CDS;product=colicin transporter;protein_id=WP_002210735.1;transl_table=11
NC_004088.1	RefSeq	gene	3367162	3367563	.	-	.	ID=gene3122;Name=Y_RS15680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15680;old_locus_tag=y3059
NC_004088.1	Protein Homology	CDS	3367162	3367563	.	-	0	ID=cds3038;Parent=gene3122;Dbxref=Genbank:WP_002210734.1;Name=WP_002210734.1;Note=catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters%3B physiological role remains unknown%3B involved in phospholipid metabolism%3B part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components;gbkey=CDS;product=acyl-CoA thioester hydrolase;protein_id=WP_002210734.1;transl_table=11
NC_004088.1	RefSeq	gene	3367695	3367982	.	-	.	ID=gene3123;Name=Y_RS15685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15685;old_locus_tag=y3060
NC_004088.1	Protein Homology	CDS	3367695	3367982	.	-	0	ID=cds3039;Parent=gene3123;Dbxref=Genbank:WP_011191945.1;Name=WP_011191945.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011191945.1;transl_table=11
NC_004088.1	RefSeq	gene	3367972	3368106	.	-	.	ID=gene3124;Name=Y_RS15690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15690;old_locus_tag=y3061
NC_004088.1	Protein Homology	CDS	3367972	3368106	.	-	0	ID=cds3040;Parent=gene3124;Dbxref=Genbank:WP_002210732.1;Name=WP_002210732.1;gbkey=CDS;product=cyd operon protein YbgT;protein_id=WP_002210732.1;transl_table=11
NC_004088.1	RefSeq	gene	3368119	3369258	.	-	.	ID=gene3125;Name=Y_RS15695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15695;old_locus_tag=y3062
NC_004088.1	Protein Homology	CDS	3368119	3369258	.	-	0	ID=cds3041;Parent=gene3125;Dbxref=Genbank:WP_002210731.1;Name=WP_002210731.1;gbkey=CDS;product=cytochrome D ubiquinol oxidase subunit II;protein_id=WP_002210731.1;transl_table=11
NC_004088.1	RefSeq	gene	3369273	3370841	.	-	.	ID=gene3126;Name=Y_RS15700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15700;old_locus_tag=y3063
NC_004088.1	Protein Homology	CDS	3369273	3370841	.	-	0	ID=cds3042;Parent=gene3126;Dbxref=Genbank:WP_002210730.1;Name=WP_002210730.1;Note=part of the aerobic respiratory chain%3B catalyzes the ubiquinol to ubiquinone;gbkey=CDS;product=cytochrome D ubiquinol oxidase subunit I;protein_id=WP_002210730.1;transl_table=11
NC_004088.1	RefSeq	gene	3371608	3372480	.	-	.	ID=gene3127;Name=Y_RS15705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15705;old_locus_tag=y3064
NC_004088.1	Protein Homology	CDS	3371608	3372480	.	-	0	ID=cds3043;Parent=gene3127;Dbxref=Genbank:WP_002210729.1;Name=WP_002210729.1;Note=Catalyzes the only substrate-level phosphorylation in the TCA cycle;gbkey=CDS;product=succinyl-CoA synthetase subunit alpha;protein_id=WP_002210729.1;transl_table=11
NC_004088.1	RefSeq	gene	3372480	3373646	.	-	.	ID=gene3128;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=Y_RS15710;old_locus_tag=y3065
NC_004088.1	Protein Homology	CDS	3372480	3373646	.	-	0	ID=cds3044;Parent=gene3128;Dbxref=Genbank:WP_002210728.1;Name=WP_002210728.1;Note=catalyzes the interconversion of succinyl-CoA and succinate;gbkey=CDS;gene=sucC;product=succinyl-CoA ligase subunit beta;protein_id=WP_002210728.1;transl_table=11
NC_004088.1	RefSeq	gene	3373759	3374982	.	-	.	ID=gene3129;Name=Y_RS15715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15715;old_locus_tag=y3066
NC_004088.1	Protein Homology	CDS	3373759	3374982	.	-	0	ID=cds3045;Parent=gene3129;Dbxref=Genbank:WP_002210727.1;Name=WP_002210727.1;Note=component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA;gbkey=CDS;product=dihydrolipoamide succinyltransferase;protein_id=WP_002210727.1;transl_table=11
NC_004088.1	RefSeq	gene	3375012	3377819	.	-	.	ID=gene3130;Name=Y_RS15720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15720;old_locus_tag=y3067
NC_004088.1	Protein Homology	CDS	3375012	3377819	.	-	0	ID=cds3046;Parent=gene3130;Dbxref=Genbank:WP_002210726.1;Name=WP_002210726.1;gbkey=CDS;product=2-oxoglutarate dehydrogenase E1;protein_id=WP_002210726.1;transl_table=11
NC_004088.1	RefSeq	gene	3378175	3378891	.	-	.	ID=gene3131;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=Y_RS15725;old_locus_tag=y3068
NC_004088.1	Protein Homology	CDS	3378175	3378891	.	-	0	ID=cds3047;Parent=gene3131;Dbxref=Genbank:WP_002210725.1;Name=WP_002210725.1;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase;gbkey=CDS;gene=sdhB;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_002210725.1;transl_table=11
NC_004088.1	RefSeq	gene	3378941	3380707	.	-	.	ID=gene3132;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=Y_RS15730;old_locus_tag=y3069
NC_004088.1	Protein Homology	CDS	3378941	3380707	.	-	0	ID=cds3048;Parent=gene3132;Dbxref=Genbank:WP_002210724.1;Name=WP_002210724.1;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol;gbkey=CDS;gene=sdhA;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_002210724.1;transl_table=11
NC_004088.1	RefSeq	gene	3380708	3381055	.	-	.	ID=gene3133;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=Y_RS15735;old_locus_tag=y3070
NC_004088.1	Protein Homology	CDS	3380708	3381055	.	-	0	ID=cds3049;Parent=gene3133;Dbxref=Genbank:WP_002210723.1;Name=WP_002210723.1;gbkey=CDS;gene=sdhD;product=succinate dehydrogenase cytochrome b556 small membrane subunit;protein_id=WP_002210723.1;transl_table=11
NC_004088.1	RefSeq	gene	3381049	3381438	.	-	.	ID=gene3134;Name=Y_RS15740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15740;old_locus_tag=y3071
NC_004088.1	Protein Homology	CDS	3381049	3381438	.	-	0	ID=cds3050;Parent=gene3134;Dbxref=Genbank:WP_002210722.1;Name=WP_002210722.1;gbkey=CDS;product=succinate dehydrogenase cytochrome b556 large membrane subunit;protein_id=WP_002210722.1;transl_table=11
NC_004088.1	RefSeq	gene	3382148	3383428	.	+	.	ID=gene3135;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;locus_tag=Y_RS15745;old_locus_tag=y3072
NC_004088.1	Protein Homology	CDS	3382148	3383428	.	+	0	ID=cds3051;Parent=gene3135;Dbxref=Genbank:WP_002210721.1;Name=WP_002210721.1;Note=type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH;gbkey=CDS;gene=gltA;product=type II citrate synthase;protein_id=WP_002210721.1;transl_table=11
NC_004088.1	RefSeq	gene	3383536	3384114	.	-	.	ID=gene3136;Name=Y_RS15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15750;old_locus_tag=y3073
NC_004088.1	Protein Homology	CDS	3383536	3384114	.	-	0	ID=cds3052;Parent=gene3136;Dbxref=Genbank:WP_002210720.1;Name=WP_002210720.1;Note=with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor;gbkey=CDS;product=protein GrpE;protein_id=WP_002210720.1;transl_table=11
NC_004088.1	RefSeq	gene	3384238	3385119	.	+	.	ID=gene3137;Name=ppnK;gbkey=Gene;gene=ppnK;gene_biotype=protein_coding;locus_tag=Y_RS15755;old_locus_tag=y3074
NC_004088.1	Protein Homology	CDS	3384238	3385119	.	+	0	ID=cds3053;Parent=gene3137;Dbxref=Genbank:WP_002210719.1;Name=WP_002210719.1;Note=catalyzes the phosphorylation of NAD to NADP;gbkey=CDS;gene=ppnK;product=NAD kinase;protein_id=WP_002210719.1;transl_table=11
NC_004088.1	RefSeq	gene	3385206	3386867	.	+	.	ID=gene3138;Name=Y_RS15760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15760;old_locus_tag=y3075
NC_004088.1	Protein Homology	CDS	3385206	3386867	.	+	0	ID=cds3054;Parent=gene3138;Dbxref=Genbank:WP_002210718.1;Name=WP_002210718.1;gbkey=CDS;product=DNA repair protein RecN;protein_id=WP_002210718.1;transl_table=11
NC_004088.1	RefSeq	gene	3386981	3387322	.	+	.	ID=gene3139;Name=Y_RS15765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15765;old_locus_tag=y3076
NC_004088.1	Protein Homology	CDS	3386981	3387322	.	+	0	ID=cds3055;Parent=gene3139;Dbxref=Genbank:WP_002210717.1;Name=WP_002210717.1;gbkey=CDS;product=outer membrane biogenesis protein BamE;protein_id=WP_002210717.1;transl_table=11
NC_004088.1	RefSeq	gene	3387472	3387756	.	-	.	ID=gene3140;Name=Y_RS15770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15770;old_locus_tag=y3077
NC_004088.1	Protein Homology	CDS	3387472	3387756	.	-	0	ID=cds3056;Parent=gene3140;Dbxref=Genbank:WP_002210716.1;Name=WP_002210716.1;gbkey=CDS;product=protein RnfH;protein_id=WP_002210716.1;transl_table=11
NC_004088.1	RefSeq	gene	3387749	3388183	.	-	.	ID=gene3141;Name=Y_RS15775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15775;old_locus_tag=y3078
NC_004088.1	Protein Homology	CDS	3387749	3388183	.	-	0	ID=cds3057;Parent=gene3141;Dbxref=Genbank:WP_002210715.1;Name=WP_002210715.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210715.1;transl_table=11
NC_004088.1	RefSeq	gene	3388344	3388826	.	+	.	ID=gene3142;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=Y_RS15780;old_locus_tag=y3079
NC_004088.1	Protein Homology	CDS	3388344	3388826	.	+	0	ID=cds3058;Parent=gene3142;Dbxref=Genbank:WP_002210714.1;Name=WP_002210714.1;Note=binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation;gbkey=CDS;gene=smpB;product=SsrA-binding protein;protein_id=WP_002210714.1;transl_table=11
NC_004088.1	RefSeq	gene	3388875	3389238	.	+	.	ID=gene3143;Name=Y_RS21790;gbkey=Gene;gene_biotype=misc_RNA;locus_tag=Y_RS21790
NC_004088.1	RefSeq	transcript	3388875	3389238	.	+	.	ID=rna78;Parent=gene3143;Note=tags incomplete translation products for degradation;gbkey=misc_RNA;product=10Sa RNA (tmRNA)
NC_004088.1	RefSeq	exon	3388875	3389238	.	+	.	ID=id368;Parent=rna78;Note=tags incomplete translation products for degradation;gbkey=misc_RNA;product=10Sa RNA (tmRNA)
NC_004088.1	RefSeq	gene	3389271	3389471	.	+	.	ID=gene3144;Name=Y_RS15785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15785
NC_004088.1	Protein Homology	CDS	3389271	3389471	.	+	0	ID=cds3059;Parent=gene3144;Dbxref=Genbank:WP_002215944.1;Name=WP_002215944.1;gbkey=CDS;product=invasin;protein_id=WP_002215944.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3389309	3390031	.	+	.	ID=id369;gbkey=repeat_region
NC_004088.1	RefSeq	region	3389316	3390025	.	+	.	ID=id370;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3389461	3389919	.	+	.	ID=gene3145;Name=Y_RS15790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15790;old_locus_tag=y3080
NC_004088.1	Protein Homology	CDS	3389461	3389919	.	+	0	ID=cds3060;Parent=gene3145;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	3390143	3391342	.	+	.	ID=gene3146;Name=Y_RS15795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15795;old_locus_tag=y3081
NC_004088.1	Protein Homology	CDS	3390143	3391342	.	+	0	ID=cds3061;Parent=gene3146;Dbxref=Genbank:WP_002210713.1;Name=WP_002210713.1;gbkey=CDS;product=integrase;protein_id=WP_002210713.1;transl_table=11
NC_004088.1	RefSeq	gene	3391421	3392509	.	+	.	ID=gene3147;Name=Y_RS15800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15800;old_locus_tag=y3082
NC_004088.1	Protein Homology	CDS	3391421	3392509	.	+	0	ID=cds3062;Parent=gene3147;Dbxref=Genbank:WP_002210712.1;Name=WP_002210712.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210712.1;transl_table=11
NC_004088.1	RefSeq	gene	3392560	3394229	.	+	.	ID=gene3148;Name=Y_RS15805;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS15805;old_locus_tag=y3083;pseudo=true
NC_004088.1	Protein Homology	CDS	3392560	3394229	.	+	0	ID=cds3063;Parent=gene3148;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3394391	3394618	.	-	.	ID=gene3149;Name=Y_RS15810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15810
NC_004088.1	Protein Homology	CDS	3394391	3394618	.	-	0	ID=cds3064;Parent=gene3149;Dbxref=Genbank:WP_002215946.1;Name=WP_002215946.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215946.1;transl_table=11
NC_004088.1	RefSeq	gene	3394849	3395022	.	+	.	ID=gene3150;Name=Y_RS15815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15815
NC_004088.1	Protein Homology	CDS	3394849	3395022	.	+	0	ID=cds3065;Parent=gene3150;Dbxref=Genbank:WP_002215947.1;Name=WP_002215947.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215947.1;transl_table=11
NC_004088.1	RefSeq	gene	3395081	3395404	.	+	.	ID=gene3151;Name=Y_RS15820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15820;old_locus_tag=y3084
NC_004088.1	Protein Homology	CDS	3395081	3395404	.	+	0	ID=cds3066;Parent=gene3151;Dbxref=Genbank:WP_011566205.1;Name=WP_011566205.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011566205.1;transl_table=11
NC_004088.1	RefSeq	gene	3395426	3396313	.	+	.	ID=gene3152;Name=Y_RS15825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15825;old_locus_tag=y3085
NC_004088.1	Protein Homology	CDS	3395426	3396313	.	+	0	ID=cds3067;Parent=gene3152;Dbxref=Genbank:WP_002210710.1;Name=WP_002210710.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002210710.1;transl_table=11
NC_004088.1	RefSeq	gene	3396306	3396506	.	+	.	ID=gene3153;Name=Y_RS15830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15830
NC_004088.1	Protein Homology	CDS	3396306	3396506	.	+	0	ID=cds3068;Parent=gene3153;Dbxref=Genbank:WP_002210709.1;Name=WP_002210709.1;gbkey=CDS;product=dipicolinate synthase;protein_id=WP_002210709.1;transl_table=11
NC_004088.1	RefSeq	gene	3396506	3397048	.	+	.	ID=gene3154;Name=Y_RS15835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15835;old_locus_tag=y3086
NC_004088.1	Protein Homology	CDS	3396506	3397048	.	+	0	ID=cds3069;Parent=gene3154;Dbxref=Genbank:WP_002215949.1;Name=WP_002215949.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215949.1;transl_table=11
NC_004088.1	RefSeq	gene	3397041	3398000	.	+	.	ID=gene3155;Name=Y_RS15840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15840;old_locus_tag=y3087
NC_004088.1	Protein Homology	CDS	3397041	3398000	.	+	0	ID=cds3070;Parent=gene3155;Dbxref=Genbank:WP_002215950.1;Name=WP_002215950.1;gbkey=CDS;product=DNA primase;protein_id=WP_002215950.1;transl_table=11
NC_004088.1	RefSeq	gene	3397997	3399085	.	+	.	ID=gene3156;Name=Y_RS15845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15845;old_locus_tag=y3088
NC_004088.1	Protein Homology	CDS	3397997	3399085	.	+	0	ID=cds3071;Parent=gene3156;Dbxref=Genbank:WP_002210707.1;Name=WP_002210707.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210707.1;transl_table=11
NC_004088.1	RefSeq	gene	3399434	3399748	.	-	.	ID=gene3157;Name=Y_RS15850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15850;old_locus_tag=y3089
NC_004088.1	Protein Homology	CDS	3399434	3399748	.	-	0	ID=cds3072;Parent=gene3157;Dbxref=Genbank:WP_002210705.1;Name=WP_002210705.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002210705.1;transl_table=11
NC_004088.1	RefSeq	gene	3399754	3400071	.	-	.	ID=gene3158;Name=Y_RS15855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15855
NC_004088.1	Protein Homology	CDS	3399754	3400071	.	-	0	ID=cds3073;Parent=gene3158;Dbxref=Genbank:WP_002215951.1;Name=WP_002215951.1;gbkey=CDS;product=addiction module protein;protein_id=WP_002215951.1;transl_table=11
NC_004088.1	RefSeq	gene	3400486	3400662	.	+	.	ID=gene3159;Name=Y_RS15860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15860
NC_004088.1	Protein Homology	CDS	3400486	3400662	.	+	0	ID=cds3074;Parent=gene3159;Dbxref=Genbank:WP_002210704.1;Name=WP_002210704.1;gbkey=CDS;product=integrase;protein_id=WP_002210704.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3400588	3402546	.	+	.	ID=id371;gbkey=repeat_region
NC_004088.1	RefSeq	region	3400590	3402543	.	+	.	ID=id372;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3400676	3401698	.	+	.	ID=gene3160;Name=Y_RS15865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15865;old_locus_tag=y3090
NC_004088.1	Protein Homology	CDS	3400676	3401698	.	+	0	ID=cds3075;Parent=gene3160;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	3401698	3402477	.	+	.	ID=gene3161;Name=Y_RS15870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15870;old_locus_tag=y3091
NC_004088.1	Protein Homology	CDS	3401698	3402477	.	+	0	ID=cds3076;Parent=gene3161;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	3402528	3402761	.	-	.	ID=gene3162;Name=Y_RS15875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15875;old_locus_tag=y3092
NC_004088.1	Protein Homology	CDS	3402528	3402761	.	-	0	ID=cds3077;Parent=gene3162;Dbxref=Genbank:WP_002210703.1;Name=WP_002210703.1;gbkey=CDS;product=polysaccharide deacetylase;protein_id=WP_002210703.1;transl_table=11
NC_004088.1	RefSeq	gene	3402754	3402858	.	-	.	ID=gene3163;Name=Y_RS15880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15880
NC_004088.1	Protein Homology	CDS	3402754	3402858	.	-	0	ID=cds3078;Parent=gene3163;Dbxref=Genbank:WP_016257724.1;Name=WP_016257724.1;gbkey=CDS;product=type IV collagen alpha 1 chain;protein_id=WP_016257724.1;transl_table=11
NC_004088.1	RefSeq	gene	3403082	3404566	.	+	.	ID=gene3164;Name=Y_RS15885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15885;old_locus_tag=y3093
NC_004088.1	Protein Homology	CDS	3403082	3404566	.	+	0	ID=cds3079;Parent=gene3164;Dbxref=Genbank:WP_002210701.1;Name=WP_002210701.1;gbkey=CDS;product=permease;protein_id=WP_002210701.1;transl_table=11
NC_004088.1	RefSeq	gene	3404623	3404699	.	-	.	ID=gene3165;Name=Y_RS15890;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS15890;old_locus_tag=yt062
NC_004088.1	tRNAscan-SE	tRNA	3404623	3404699	.	-	.	ID=rna79;Parent=gene3165;anticodon=(pos:complement(3404663..3404665));gbkey=tRNA;product=tRNA-Asp
NC_004088.1	tRNAscan-SE	exon	3404623	3404699	.	-	.	ID=id373;Parent=rna79;anticodon=(pos:complement(3404663..3404665));gbkey=tRNA;product=tRNA-Asp
NC_004088.1	RefSeq	gene	3404812	3405576	.	-	.	ID=gene3166;Name=Y_RS15895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15895;old_locus_tag=y3094
NC_004088.1	Protein Homology	CDS	3404812	3405576	.	-	0	ID=cds3080;Parent=gene3166;Dbxref=Genbank:WP_002210700.1;Name=WP_002210700.1;Note=3'-5' exonuclease of DNA polymerase III;gbkey=CDS;product=DNA polymerase III subunit epsilon;protein_id=WP_002210700.1;transl_table=11
NC_004088.1	RefSeq	gene	3405646	3406110	.	+	.	ID=gene3167;Name=Y_RS15900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15900;old_locus_tag=y3095
NC_004088.1	Protein Homology	CDS	3405646	3406110	.	+	0	ID=cds3081;Parent=gene3167;Dbxref=Genbank:WP_002210699.1;Name=WP_002210699.1;gbkey=CDS;product=ribonuclease HI;protein_id=WP_002210699.1;transl_table=11
NC_004088.1	RefSeq	gene	3406165	3406884	.	-	.	ID=gene3168;Name=Y_RS15905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15905;old_locus_tag=y3096
NC_004088.1	Protein Homology	CDS	3406165	3406884	.	-	0	ID=cds3082;Parent=gene3168;Dbxref=Genbank:WP_002210698.1;Name=WP_002210698.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210698.1;transl_table=11
NC_004088.1	RefSeq	gene	3406929	3407684	.	+	.	ID=gene3169;Name=Y_RS15910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15910;old_locus_tag=y3097
NC_004088.1	Protein Homology	CDS	3406929	3407684	.	+	0	ID=cds3083;Parent=gene3169;Dbxref=Genbank:WP_002210697.1;Name=WP_002210697.1;gbkey=CDS;product=hydroxyacylglutathione hydrolase;protein_id=WP_002210697.1;transl_table=11
NC_004088.1	RefSeq	gene	3407756	3409144	.	+	.	ID=gene3170;Name=mltD;gbkey=Gene;gene=mltD;gene_biotype=protein_coding;gene_synonym=dniR,yafG;locus_tag=Y_RS15915;old_locus_tag=y3098
NC_004088.1	Protein Homology	CDS	3407756	3409144	.	+	0	ID=cds3084;Parent=gene3170;Dbxref=Genbank:WP_002228041.1;Name=WP_002228041.1;Note=catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues%3B may play a role in recycling muropeptides during cell division and/or cell elongation%3B in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall;gbkey=CDS;gene=mltD;product=murein transglycosylase;protein_id=WP_002228041.1;transl_table=11
NC_004088.1	RefSeq	gene	3409186	3409947	.	-	.	ID=gene3171;Name=Y_RS15920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15920;old_locus_tag=y3099
NC_004088.1	Protein Homology	CDS	3409186	3409947	.	-	0	ID=cds3085;Parent=gene3171;Dbxref=Genbank:WP_002210695.1;Name=WP_002210695.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210695.1;transl_table=11
NC_004088.1	RefSeq	gene	3410329	3410775	.	-	.	ID=gene3172;Name=Y_RS15925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15925;old_locus_tag=y3100
NC_004088.1	Protein Homology	CDS	3410329	3410775	.	-	0	ID=cds3086;Parent=gene3172;Dbxref=Genbank:WP_002210694.1;Name=WP_002210694.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210694.1;transl_table=11
NC_004088.1	RefSeq	gene	3410828	3411631	.	-	.	ID=gene3173;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=Y_RS15930;old_locus_tag=y3101
NC_004088.1	Protein Homology	CDS	3410828	3411631	.	-	0	ID=cds3087;Parent=gene3173;Dbxref=Genbank:WP_002210693.1;Name=WP_002210693.1;Note=catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid;gbkey=CDS;gene=dkgB;product=2%2C5-diketo-D-gluconic acid reductase B;protein_id=WP_002210693.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3411989	3417606	.	+	.	ID=id374;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3411990	3412066	.	-	.	ID=gene3174;Name=Y_RS15935;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS15935;old_locus_tag=yt063
NC_004088.1	tRNAscan-SE	tRNA	3411990	3412066	.	-	.	ID=rna80;Parent=gene3174;anticodon=(pos:complement(3412030..3412032));gbkey=tRNA;product=tRNA-Asp
NC_004088.1	tRNAscan-SE	exon	3411990	3412066	.	-	.	ID=id375;Parent=rna80;anticodon=(pos:complement(3412030..3412032));gbkey=tRNA;product=tRNA-Asp
NC_004088.1	RefSeq	gene	3412192	3412307	.	-	.	ID=gene3175;Name=Y_RS15940;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS15940;old_locus_tag=yr018
NC_004088.1	cmsearch	rRNA	3412192	3412307	.	-	.	ID=rna81;Parent=gene3175;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	cmsearch	exon	3412192	3412307	.	-	.	ID=id376;Parent=rna81;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	RefSeq	gene	3412399	3415332	.	-	.	ID=gene3176;Name=Y_RS15945;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS15945;old_locus_tag=yr019
NC_004088.1	RefSeq	rRNA	3412399	3415332	.	-	.	ID=rna82;Parent=gene3176;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	exon	3412399	3415332	.	-	.	ID=id377;Parent=rna82;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	gene	3415576	3415651	.	-	.	ID=gene3177;Name=Y_RS15950;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS15950;old_locus_tag=yt064
NC_004088.1	tRNAscan-SE	tRNA	3415576	3415651	.	-	.	ID=rna83;Parent=gene3177;anticodon=(pos:complement(3415615..3415617));gbkey=tRNA;product=tRNA-Glu
NC_004088.1	tRNAscan-SE	exon	3415576	3415651	.	-	.	ID=id378;Parent=rna83;anticodon=(pos:complement(3415615..3415617));gbkey=tRNA;product=tRNA-Glu
NC_004088.1	RefSeq	gene	3415785	3417333	.	-	.	ID=gene3178;Name=Y_RS15955;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS15955;old_locus_tag=yr020
NC_004088.1	RefSeq	rRNA	3415785	3417333	.	-	.	ID=rna84;Parent=gene3178;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	exon	3415785	3417333	.	-	.	ID=id379;Parent=rna84;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	gene	3417772	3418338	.	-	.	ID=gene3179;Name=Y_RS15965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15965;old_locus_tag=y3103
NC_004088.1	Protein Homology	CDS	3417772	3418338	.	-	0	ID=cds3088;Parent=gene3179;Dbxref=Genbank:WP_002220062.1;Name=WP_002220062.1;Note=Converts the D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate;gbkey=CDS;product=D-glycero-beta-D-manno-heptose-1%2C7-bisphosphate 7-phosphatase;protein_id=WP_002220062.1;transl_table=11
NC_004088.1	RefSeq	gene	3418525	3419556	.	+	.	ID=gene3180;Name=metN;gbkey=Gene;gene=metN;gene_biotype=protein_coding;locus_tag=Y_RS15970;old_locus_tag=y3104
NC_004088.1	Protein Homology	CDS	3418525	3419556	.	+	0	ID=cds3089;Parent=gene3180;Dbxref=Genbank:WP_002212161.1;Name=WP_002212161.1;Note=part of the metNIQ transport system for methionine;gbkey=CDS;gene=metN;product=methionine ABC transporter ATP-binding protein;protein_id=WP_002212161.1;transl_table=11
NC_004088.1	RefSeq	gene	3419549	3420202	.	+	.	ID=gene3181;Name=Y_RS15975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15975;old_locus_tag=y3105
NC_004088.1	Protein Homology	CDS	3419549	3420202	.	+	0	ID=cds3090;Parent=gene3181;Dbxref=Genbank:WP_002212160.1;Name=WP_002212160.1;Note=part of the MetNIQ methionine uptake system;gbkey=CDS;product=methionine ABC transporter;protein_id=WP_002212160.1;transl_table=11
NC_004088.1	RefSeq	gene	3420266	3421081	.	+	.	ID=gene3182;Name=metQ;gbkey=Gene;gene=metQ;gene_biotype=protein_coding;locus_tag=Y_RS15980;old_locus_tag=y3106
NC_004088.1	Protein Homology	CDS	3420266	3421081	.	+	0	ID=cds3091;Parent=gene3182;Dbxref=Genbank:WP_002212159.1;Name=WP_002212159.1;gbkey=CDS;gene=metQ;product=D-methionine-binding lipoprotein MetQ;protein_id=WP_002212159.1;transl_table=11
NC_004088.1	RefSeq	gene	3421199	3421606	.	+	.	ID=gene3183;Name=rcsF;gbkey=Gene;gene=rcsF;gene_biotype=protein_coding;locus_tag=Y_RS15985;old_locus_tag=y3107
NC_004088.1	Protein Homology	CDS	3421199	3421606	.	+	0	ID=cds3092;Parent=gene3183;Dbxref=Genbank:WP_002212158.1;Name=WP_002212158.1;gbkey=CDS;gene=rcsF;product=hypothetical protein;protein_id=WP_002212158.1;transl_table=11
NC_004088.1	RefSeq	gene	3421603	3422310	.	+	.	ID=gene3184;Name=Y_RS15990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15990;old_locus_tag=y3108
NC_004088.1	Protein Homology	CDS	3421603	3422310	.	+	0	ID=cds3093;Parent=gene3184;Dbxref=Genbank:WP_002212157.1;Name=WP_002212157.1;gbkey=CDS;product=tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA;protein_id=WP_002212157.1;transl_table=11
NC_004088.1	RefSeq	gene	3422414	3424132	.	+	.	ID=gene3185;Name=Y_RS15995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS15995;old_locus_tag=y3109
NC_004088.1	Protein Homology	CDS	3422414	3424132	.	+	0	ID=cds3094;Parent=gene3185;Dbxref=Genbank:WP_002212156.1;Name=WP_002212156.1;Note=catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro);gbkey=CDS;product=proline--tRNA ligase;protein_id=WP_002212156.1;transl_table=11
NC_004088.1	RefSeq	gene	3424266	3424949	.	-	.	ID=gene3186;Name=Y_RS16000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16000;old_locus_tag=y3110
NC_004088.1	Protein Homology	CDS	3424266	3424949	.	-	0	ID=cds3095;Parent=gene3186;Dbxref=Genbank:WP_002212155.1;Name=WP_002212155.1;gbkey=CDS;product=lipoprotein involved with copper homeostasis and adhesion;protein_id=WP_002212155.1;transl_table=11
NC_004088.1	RefSeq	gene	3425034	3425450	.	-	.	ID=gene3187;Name=Y_RS16005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16005;old_locus_tag=y3111
NC_004088.1	Protein Homology	CDS	3425034	3425450	.	-	0	ID=cds3096;Parent=gene3187;Dbxref=Genbank:WP_002212154.1;Name=WP_002212154.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212154.1;transl_table=11
NC_004088.1	RefSeq	gene	3425453	3426001	.	-	.	ID=gene3188;Name=Y_RS16010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16010;old_locus_tag=y3112
NC_004088.1	Protein Homology	CDS	3425453	3426001	.	-	0	ID=cds3097;Parent=gene3188;Dbxref=Genbank:WP_002212153.1;Name=WP_002212153.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212153.1;transl_table=11
NC_004088.1	RefSeq	gene	3426243	3426443	.	+	.	ID=gene3189;Name=Y_RS16015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16015;old_locus_tag=y3113
NC_004088.1	Protein Homology	CDS	3426243	3426443	.	+	0	ID=cds3098;Parent=gene3189;Dbxref=Genbank:WP_002212152.1;Name=WP_002212152.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212152.1;transl_table=11
NC_004088.1	RefSeq	gene	3426430	3426690	.	+	.	ID=gene3190;Name=Y_RS16020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16020;old_locus_tag=y3115
NC_004088.1	Protein Homology	CDS	3426430	3426690	.	+	0	ID=cds3099;Parent=gene3190;Dbxref=Genbank:WP_002218374.1;Name=WP_002218374.1;Note=Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination;gbkey=CDS;product=Rho-binding antiterminator;protein_id=WP_002218374.1;transl_table=11
NC_004088.1	RefSeq	gene	3426955	3427272	.	-	.	ID=gene3191;Name=Y_RS16025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16025;old_locus_tag=y3116
NC_004088.1	Protein Homology	CDS	3426955	3427272	.	-	0	ID=cds3100;Parent=gene3191;Dbxref=Genbank:WP_002212150.1;Name=WP_002212150.1;gbkey=CDS;product=cytochrome C554;protein_id=WP_002212150.1;transl_table=11
NC_004088.1	RefSeq	gene	3427509	3428891	.	-	.	ID=gene3192;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=Y_RS16030;old_locus_tag=y3117
NC_004088.1	Protein Homology	CDS	3427509	3428891	.	-	0	ID=cds3101;Parent=gene3192;Dbxref=Genbank:WP_002212149.1;Name=WP_002212149.1;Note=Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU%3B ATP-dependent%3B responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase;gbkey=CDS;gene=tilS;product=tRNA(Ile)-lysidine synthase;protein_id=WP_002212149.1;transl_table=11
NC_004088.1	RefSeq	gene	3428893	3429291	.	-	.	ID=gene3193;Name=Y_RS16035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16035;old_locus_tag=y3118
NC_004088.1	Protein Homology	CDS	3428893	3429291	.	-	0	ID=cds3102;Parent=gene3193;Dbxref=Genbank:WP_002212148.1;Name=WP_002212148.1;gbkey=CDS;product=lyase;protein_id=WP_002212148.1;transl_table=11
NC_004088.1	RefSeq	gene	3429475	3430434	.	-	.	ID=gene3194;Name=Y_RS16040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16040;old_locus_tag=y3119
NC_004088.1	Protein Homology	CDS	3429475	3430434	.	-	0	ID=cds3103;Parent=gene3194;Dbxref=Genbank:WP_002212147.1;Name=WP_002212147.1;Note=catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits%3B one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein;gbkey=CDS;product=acetyl-CoA carboxylase carboxyltransferase subunit alpha;protein_id=WP_002212147.1;transl_table=11
NC_004088.1	RefSeq	gene	3430447	3433929	.	-	.	ID=gene3195;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=Y_RS16045;old_locus_tag=y3120
NC_004088.1	Protein Homology	CDS	3430447	3433929	.	-	0	ID=cds3104;Parent=gene3195;Dbxref=Genbank:WP_002228634.1;Name=WP_002228634.1;Note=catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase;gbkey=CDS;gene=dnaE;product=DNA polymerase III subunit alpha;protein_id=WP_002228634.1;transl_table=11
NC_004088.1	RefSeq	gene	3434092	3434688	.	-	.	ID=gene3196;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=Y_RS16050;old_locus_tag=y3121
NC_004088.1	Protein Homology	CDS	3434092	3434688	.	-	0	ID=cds3105;Parent=gene3196;Dbxref=Genbank:WP_002212145.1;Name=WP_002212145.1;Note=RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids;gbkey=CDS;gene=rnhB;product=ribonuclease HII;protein_id=WP_002212145.1;transl_table=11
NC_004088.1	RefSeq	gene	3434685	3435869	.	-	.	ID=gene3197;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=Y_RS16055;old_locus_tag=y3122
NC_004088.1	Protein Homology	CDS	3434685	3435869	.	-	0	ID=cds3106;Parent=gene3197;Dbxref=Genbank:WP_002212144.1;Name=WP_002212144.1;Note=catalyzes the formation of lipid A disaccharide from UDP-2%2C3-diacylglucosamine and 2%2C3-diacylglucosamine-1-phosphate%2C lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM;gbkey=CDS;gene=lpxB;product=lipid-A-disaccharide synthase;protein_id=WP_002212144.1;transl_table=11
NC_004088.1	RefSeq	gene	3435873	3436661	.	-	.	ID=gene3198;Name=Y_RS16060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16060;old_locus_tag=y3123
NC_004088.1	Protein Homology	CDS	3435873	3436661	.	-	0	ID=cds3107;Parent=gene3198;Dbxref=Genbank:WP_002212143.1;Name=WP_002212143.1;Note=catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis;gbkey=CDS;product=acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_002212143.1;transl_table=11
NC_004088.1	RefSeq	gene	3436665	3437195	.	-	.	ID=gene3199;Name=Y_RS16065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16065;old_locus_tag=y3124
NC_004088.1	Protein Homology	CDS	3436665	3437195	.	-	0	ID=cds3108;Parent=gene3199;Dbxref=Genbank:WP_002217656.1;Name=WP_002217656.1;gbkey=CDS;product=3-hydroxyacyl-ACP dehydratase;protein_id=WP_002217656.1;transl_table=11
NC_004088.1	RefSeq	gene	3437353	3438375	.	-	.	ID=gene3200;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=Y_RS16070;old_locus_tag=y3125
NC_004088.1	Protein Homology	CDS	3437353	3438375	.	-	0	ID=cds3109;Parent=gene3200;Dbxref=Genbank:WP_002212141.1;Name=WP_002212141.1;Note=adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis;gbkey=CDS;gene=lpxD;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_002212141.1;transl_table=11
NC_004088.1	RefSeq	gene	3438379	3438876	.	-	.	ID=gene3201;Name=Y_RS16075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16075;old_locus_tag=y3126
NC_004088.1	Protein Homology	CDS	3438379	3438876	.	-	0	ID=cds3110;Parent=gene3201;Dbxref=Genbank:WP_002212140.1;Name=WP_002212140.1;gbkey=CDS;product=chaperone protein Skp;protein_id=WP_002212140.1;transl_table=11
NC_004088.1	RefSeq	gene	3439034	3441421	.	-	.	ID=gene3202;Name=Y_RS16080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16080;old_locus_tag=y3127
NC_004088.1	Protein Homology	CDS	3439034	3441421	.	-	0	ID=cds3111;Parent=gene3202;Dbxref=Genbank:WP_002212139.1;Name=WP_002212139.1;Note=part of a complex with YfgL%2C YfiO%2C and NlpB involved in outer membrane protein biosynthesis%3B involved in the assembly of outer membrane proteins;gbkey=CDS;product=outer membrane protein assembly factor BamA;protein_id=WP_002212139.1;transl_table=11
NC_004088.1	RefSeq	gene	3441458	3442813	.	-	.	ID=gene3203;Name=Y_RS16085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16085;old_locus_tag=y3128
NC_004088.1	Protein Homology	CDS	3441458	3442813	.	-	0	ID=cds3112;Parent=gene3203;Dbxref=Genbank:WP_002212138.1;Name=WP_002212138.1;Note=catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response;gbkey=CDS;product=protease RseP;protein_id=WP_002212138.1;transl_table=11
NC_004088.1	RefSeq	gene	3442842	3443690	.	-	.	ID=gene3204;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=Y_RS16090;old_locus_tag=y3129
NC_004088.1	Protein Homology	CDS	3442842	3443690	.	-	0	ID=cds3113;Parent=gene3204;Dbxref=Genbank:WP_002212137.1;Name=WP_002212137.1;Note=catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate;gbkey=CDS;gene=cdsA;product=CDP-diglyceride synthase;protein_id=WP_002212137.1;transl_table=11
NC_004088.1	RefSeq	gene	3443700	3444458	.	-	.	ID=gene3205;Name=Y_RS16095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16095;old_locus_tag=y3130
NC_004088.1	Protein Homology	CDS	3443700	3444458	.	-	0	ID=cds3114;Parent=gene3205;Dbxref=Genbank:WP_002212136.1;Name=WP_002212136.1;Note=catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate;gbkey=CDS;product=ditrans%2Cpolycis-undecaprenyl-diphosphate synthase ((2E%2C6E)-farnesyl-diphosphate specific);protein_id=WP_002212136.1;transl_table=11
NC_004088.1	RefSeq	gene	3444682	3445878	.	-	.	ID=gene3206;Name=Y_RS16100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16100;old_locus_tag=y3131
NC_004088.1	Protein Homology	CDS	3444682	3445878	.	-	0	ID=cds3115;Parent=gene3206;Dbxref=Genbank:WP_002212135.1;Name=WP_002212135.1;Note=catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate;gbkey=CDS;product=1-deoxy-D-xylulose 5-phosphate reductoisomerase;protein_id=WP_002212135.1;transl_table=11
NC_004088.1	RefSeq	gene	3446092	3446649	.	-	.	ID=gene3207;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=Y_RS16105;old_locus_tag=y3133
NC_004088.1	Protein Homology	CDS	3446092	3446649	.	-	0	ID=cds3116;Parent=gene3207;Dbxref=Genbank:WP_002212134.1;Name=WP_002212134.1;Note=Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs;gbkey=CDS;gene=frr;product=ribosome-recycling factor;protein_id=WP_002212134.1;transl_table=11
NC_004088.1	RefSeq	gene	3446785	3447510	.	-	.	ID=gene3208;Name=Y_RS16110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16110;old_locus_tag=y3134
NC_004088.1	Protein Homology	CDS	3446785	3447510	.	-	0	ID=cds3117;Parent=gene3208;Dbxref=Genbank:WP_002212133.1;Name=WP_002212133.1;gbkey=CDS;product=uridylate kinase;protein_id=WP_002212133.1;transl_table=11
NC_004088.1	RefSeq	gene	3447719	3448576	.	-	.	ID=gene3209;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=Y_RS16115;old_locus_tag=y3135
NC_004088.1	Protein Homology	CDS	3447719	3448576	.	-	0	ID=cds3118;Parent=gene3209;Dbxref=Genbank:WP_002212132.1;Name=WP_002212132.1;Note=EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu;gbkey=CDS;gene=tsf;product=elongation factor Ts;protein_id=WP_002212132.1;transl_table=11
NC_004088.1	RefSeq	gene	3448704	3449429	.	-	.	ID=gene3210;Name=Y_RS16120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16120;old_locus_tag=y3137
NC_004088.1	Protein Homology	CDS	3448704	3449429	.	-	0	ID=cds3119;Parent=gene3210;Dbxref=Genbank:WP_002221800.1;Name=WP_002221800.1;gbkey=CDS;product=30S ribosomal protein S2;protein_id=WP_002221800.1;transl_table=11
NC_004088.1	RefSeq	gene	3449864	3450655	.	+	.	ID=gene3211;Name=Y_RS16125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16125;old_locus_tag=y3138
NC_004088.1	Protein Homology	CDS	3449864	3450655	.	+	0	ID=cds3120;Parent=gene3211;Dbxref=Genbank:WP_002212130.1;Name=WP_002212130.1;Note=catalyzes the removal of N-terminal amino acids from peptides and arylamides%3B generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn%2C Fe%2C or Mn;gbkey=CDS;product=methionine aminopeptidase;protein_id=WP_002212130.1;transl_table=11
NC_004088.1	RefSeq	gene	3450715	3453396	.	+	.	ID=gene3212;Name=Y_RS16130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16130;old_locus_tag=y3139
NC_004088.1	Protein Homology	CDS	3450715	3453396	.	+	0	ID=cds3121;Parent=gene3212;Dbxref=Genbank:WP_002212129.1;Name=WP_002212129.1;Note=catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein;gbkey=CDS;product=uridylyltransferase;protein_id=WP_002212129.1;transl_table=11
NC_004088.1	RefSeq	gene	3453571	3454395	.	+	.	ID=gene3213;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=Y_RS16135;old_locus_tag=y3140
NC_004088.1	Protein Homology	CDS	3453571	3454395	.	+	0	ID=cds3122;Parent=gene3213;Dbxref=Genbank:WP_002212128.1;Name=WP_002212128.1;Note=catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway;gbkey=CDS;gene=dapD;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_002212128.1;transl_table=11
NC_004088.1	RefSeq	gene	3454519	3454908	.	+	.	ID=gene3214;Name=Y_RS16140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16140;old_locus_tag=y3141
NC_004088.1	Protein Homology	CDS	3454519	3454908	.	+	0	ID=cds3123;Parent=gene3214;Dbxref=Genbank:WP_002212127.1;Name=WP_002212127.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212127.1;transl_table=11
NC_004088.1	RefSeq	gene	3454998	3455447	.	-	.	ID=gene3215;Name=Y_RS16145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16145;old_locus_tag=y3142
NC_004088.1	Protein Homology	CDS	3454998	3455447	.	-	0	ID=cds3124;Parent=gene3215;Dbxref=Genbank:WP_002212126.1;Name=WP_002212126.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=flavodoxin;protein_id=WP_002212126.1;transl_table=11
NC_004088.1	RefSeq	gene	3455475	3456248	.	-	.	ID=gene3216;Name=Y_RS16150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16150;old_locus_tag=y3143
NC_004088.1	Protein Homology	CDS	3455475	3456248	.	-	0	ID=cds3125;Parent=gene3216;Dbxref=Genbank:WP_002212125.1;Name=WP_002212125.1;Note=catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp;gbkey=CDS;product=tRNA pseudouridine synthase C;protein_id=WP_002212125.1;transl_table=11
NC_004088.1	RefSeq	gene	3456248	3456580	.	-	.	ID=gene3217;Name=Y_RS16155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16155;old_locus_tag=y3144
NC_004088.1	Protein Homology	CDS	3456248	3456580	.	-	0	ID=cds3126;Parent=gene3217;Dbxref=Genbank:WP_002212124.1;Name=WP_002212124.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212124.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3456723	3457444	.	+	.	ID=id380;gbkey=repeat_region
NC_004088.1	RefSeq	region	3456728	3457437	.	-	.	ID=id381;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3456834	3457292	.	-	.	ID=gene3218;Name=Y_RS16160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16160;old_locus_tag=y3145
NC_004088.1	Protein Homology	CDS	3456834	3457292	.	-	0	ID=cds3127;Parent=gene3218;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	3457982	3458533	.	-	.	ID=gene3219;Name=Y_RS16165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16165;old_locus_tag=y3146
NC_004088.1	Protein Homology	CDS	3457982	3458533	.	-	0	ID=cds3128;Parent=gene3219;Dbxref=Genbank:WP_002212123.1;Name=WP_002212123.1;gbkey=CDS;product=protein Syd;protein_id=WP_002212123.1;transl_table=11
NC_004088.1	RefSeq	gene	3458665	3459510	.	+	.	ID=gene3220;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=Y_RS16170;old_locus_tag=y3147
NC_004088.1	Protein Homology	CDS	3458665	3459510	.	+	0	ID=cds3129;Parent=gene3220;Dbxref=Genbank:WP_002212122.1;Name=WP_002212122.1;Note=catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;gbkey=CDS;gene=queF;product=NADPH-dependent 7-cyano-7-deazaguanine reductase;protein_id=WP_002212122.1;transl_table=11
NC_004088.1	RefSeq	gene	3459663	3461027	.	+	.	ID=gene3221;Name=Y_RS16175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16175;old_locus_tag=y3148
NC_004088.1	Protein Homology	CDS	3459663	3461027	.	+	0	ID=cds3130;Parent=gene3221;Dbxref=Genbank:WP_002212121.1;Name=WP_002212121.1;gbkey=CDS;product=LOG family protein;protein_id=WP_002212121.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3461138	3463097	.	+	.	ID=id382;gbkey=repeat_region
NC_004088.1	RefSeq	region	3461141	3463094	.	+	.	ID=id383;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3461227	3462249	.	+	.	ID=gene3222;Name=Y_RS16180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16180;old_locus_tag=y3149
NC_004088.1	Protein Homology	CDS	3461227	3462249	.	+	0	ID=cds3131;Parent=gene3222;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	3462249	3463028	.	+	.	ID=gene3223;Name=Y_RS16185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16185;old_locus_tag=y3150
NC_004088.1	Protein Homology	CDS	3462249	3463028	.	+	0	ID=cds3132;Parent=gene3223;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	3463246	3464001	.	+	.	ID=gene3224;Name=Y_RS16190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16190;old_locus_tag=y3151
NC_004088.1	Protein Homology	CDS	3463246	3464001	.	+	0	ID=cds3133;Parent=gene3224;Dbxref=Genbank:WP_002215970.1;Name=WP_002215970.1;Note=similar to flap endonuclease%3B FEN family%3B protein from E. coli does not have exonuclease activity;gbkey=CDS;product=flap endonuclease Xni;protein_id=WP_002215970.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3464033	3464211	.	+	.	ID=id384;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3464252	3465358	.	-	.	ID=gene3225;Name=Y_RS16195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16195;old_locus_tag=y3152
NC_004088.1	Protein Homology	CDS	3464252	3465358	.	-	0	ID=cds3134;Parent=gene3225;Dbxref=Genbank:WP_002212119.1;Name=WP_002212119.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase M;protein_id=WP_002212119.1;transl_table=11
NC_004088.1	RefSeq	gene	3465351	3465731	.	-	.	ID=gene3226;Name=Y_RS16200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16200;old_locus_tag=y3153
NC_004088.1	Protein Homology	CDS	3465351	3465731	.	-	0	ID=cds3135;Parent=gene3226;Dbxref=Genbank:WP_002353892.1;Name=WP_002353892.1;gbkey=CDS;product=membrane protein;protein_id=WP_002353892.1;transl_table=11
NC_004088.1	RefSeq	gene	3465912	3466829	.	-	.	ID=gene3227;Name=Y_RS16205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16205;old_locus_tag=y3154
NC_004088.1	Protein Homology	CDS	3465912	3466829	.	-	0	ID=cds3136;Parent=gene3227;Dbxref=Genbank:WP_002212117.1;Name=WP_002212117.1;Note=Glycine cleavage system transcriptional activator%3B activates the gcvTHP operon in the presence of glycine and represses the operon in its absence;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002212117.1;transl_table=11
NC_004088.1	RefSeq	gene	3467489	3468694	.	+	.	ID=gene3228;Name=Y_RS16210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16210;old_locus_tag=y3156
NC_004088.1	Protein Homology	CDS	3467489	3468694	.	+	0	ID=cds3137;Parent=gene3228;Dbxref=Genbank:WP_002212116.1;Name=WP_002212116.1;gbkey=CDS;product=cysteine sulfinate desulfinase;protein_id=WP_002212116.1;transl_table=11
NC_004088.1	RefSeq	gene	3468829	3469272	.	+	.	ID=gene3229;Name=Y_RS16215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16215;old_locus_tag=y3157
NC_004088.1	Protein Homology	CDS	3468829	3469272	.	+	0	ID=cds3138;Parent=gene3229;Dbxref=Genbank:WP_002212115.1;Name=WP_002212115.1;gbkey=CDS;product=Fe-S metabolism protein SufE;protein_id=WP_002212115.1;transl_table=11
NC_004088.1	RefSeq	gene	3469308	3470135	.	-	.	ID=gene3230;Name=Y_RS16220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16220;old_locus_tag=y3158
NC_004088.1	Protein Homology	CDS	3469308	3470135	.	-	0	ID=cds3139;Parent=gene3230;Dbxref=Genbank:WP_002212114.1;Name=WP_002212114.1;Note=accepts sulfur from CsdA;gbkey=CDS;product=sulfur acceptor protein CsdL;protein_id=WP_002212114.1;transl_table=11
NC_004088.1	RefSeq	gene	3470278	3471450	.	-	.	ID=gene3231;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=Y_RS16225;old_locus_tag=y3159
NC_004088.1	Protein Homology	CDS	3470278	3471450	.	-	0	ID=cds3140;Parent=gene3231;Dbxref=Genbank:WP_002228046.1;Name=WP_002228046.1;Note=membrane-bound%2C lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues;gbkey=CDS;gene=mltA;product=murein transglycosylase;protein_id=WP_002228046.1;transl_table=11
NC_004088.1	RefSeq	gene	3471666	3471742	.	+	.	ID=gene3232;Name=Y_RS16230;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS16230;old_locus_tag=yt065
NC_004088.1	tRNAscan-SE	tRNA	3471666	3471742	.	+	.	ID=rna85;Parent=gene3232;anticodon=(pos:3471700..3471702);gbkey=tRNA;product=tRNA-Met
NC_004088.1	tRNAscan-SE	exon	3471666	3471742	.	+	.	ID=id385;Parent=rna85;anticodon=(pos:3471700..3471702);gbkey=tRNA;product=tRNA-Met
NC_004088.1	RefSeq	gene	3471866	3471942	.	+	.	ID=gene3233;Name=Y_RS16235;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS16235;old_locus_tag=yt066
NC_004088.1	tRNAscan-SE	tRNA	3471866	3471942	.	+	.	ID=rna86;Parent=gene3233;anticodon=(pos:3471900..3471902);gbkey=tRNA;product=tRNA-Met
NC_004088.1	tRNAscan-SE	exon	3471866	3471942	.	+	.	ID=id386;Parent=rna86;anticodon=(pos:3471900..3471902);gbkey=tRNA;product=tRNA-Met
NC_004088.1	RefSeq	gene	3472172	3473422	.	-	.	ID=gene3234;Name=amiC;gbkey=Gene;gene=amiC;gene_biotype=protein_coding;locus_tag=Y_RS16240;old_locus_tag=y3161
NC_004088.1	Protein Homology	CDS	3472172	3473422	.	-	0	ID=cds3141;Parent=gene3234;Dbxref=Genbank:WP_002211623.1;Name=WP_002211623.1;Note=hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan;gbkey=CDS;gene=amiC;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_002211623.1;transl_table=11
NC_004088.1	RefSeq	gene	3473658	3474983	.	+	.	ID=gene3235;Name=Y_RS16245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16245;old_locus_tag=y3162
NC_004088.1	Protein Homology	CDS	3473658	3474983	.	+	0	ID=cds3142;Parent=gene3235;Dbxref=Genbank:WP_002211624.1;Name=WP_002211624.1;Note=catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis;gbkey=CDS;product=amino-acid acetyltransferase;protein_id=WP_002211624.1;transl_table=11
NC_004088.1	RefSeq	gene	3475138	3477096	.	-	.	ID=gene3236;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=Y_RS16250;old_locus_tag=y3163
NC_004088.1	Protein Homology	CDS	3475138	3477096	.	-	0	ID=cds3143;Parent=gene3236;Dbxref=Genbank:WP_002215834.1;Name=WP_002215834.1;Note=helicase/nuclease%3B with RecBC catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity;gbkey=CDS;gene=recD;product=exonuclease V subunit alpha;protein_id=WP_002215834.1;transl_table=11
NC_004088.1	RefSeq	gene	3477093	3480755	.	-	.	ID=gene3237;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=Y_RS16255;old_locus_tag=y3164
NC_004088.1	Protein Homology	CDS	3477093	3480755	.	-	0	ID=cds3144;Parent=gene3237;Dbxref=Genbank:WP_002215833.1;Name=WP_002215833.1;Note=helicase/nuclease%3B with RecCD catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity;gbkey=CDS;gene=recB;product=exonuclease V subunit beta;protein_id=WP_002215833.1;transl_table=11
NC_004088.1	RefSeq	gene	3480752	3483640	.	-	.	ID=gene3238;Name=Y_RS16260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16260;old_locus_tag=y3165
NC_004088.1	Protein Homology	CDS	3480752	3483640	.	-	0	ID=cds3145;Parent=gene3238;Dbxref=Genbank:WP_002211626.1;Name=WP_002211626.1;Note=degrades small peptides;gbkey=CDS;product=protease III;protein_id=WP_002211626.1;transl_table=11
NC_004088.1	RefSeq	gene	3483722	3487093	.	-	.	ID=gene3239;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=Y_RS16265;old_locus_tag=y3166
NC_004088.1	Protein Homology	CDS	3483722	3487093	.	-	0	ID=cds3146;Parent=gene3239;Dbxref=Genbank:WP_002231332.1;Name=WP_002231332.1;Note=catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides%3B component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination;gbkey=CDS;gene=recC;product=exonuclease V subunit gamma;protein_id=WP_002231332.1;transl_table=11
NC_004088.1	RefSeq	gene	3487228	3487593	.	-	.	ID=gene3240;Name=Y_RS16270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16270;old_locus_tag=y3167
NC_004088.1	Protein Homology	CDS	3487228	3487593	.	-	0	ID=cds3147;Parent=gene3240;Dbxref=Genbank:WP_002211628.1;Name=WP_002211628.1;gbkey=CDS;product=peptidase;protein_id=WP_002211628.1;transl_table=11
NC_004088.1	RefSeq	gene	3487626	3488096	.	-	.	ID=gene3241;Name=Y_RS16275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16275;old_locus_tag=y3168
NC_004088.1	Protein Homology	CDS	3487626	3488096	.	-	0	ID=cds3148;Parent=gene3241;Dbxref=Genbank:WP_002211629.1;Name=WP_002211629.1;gbkey=CDS;product=membrane protein;protein_id=WP_002211629.1;transl_table=11
NC_004088.1	RefSeq	gene	3488093	3488701	.	-	.	ID=gene3242;Name=Y_RS16280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16280;old_locus_tag=y3169
NC_004088.1	Protein Homology	CDS	3488093	3488701	.	-	0	ID=cds3149;Parent=gene3242;Dbxref=Genbank:WP_002211630.1;Name=WP_002211630.1;gbkey=CDS;product=cleavage protein;protein_id=WP_002211630.1;transl_table=11
NC_004088.1	RefSeq	gene	3488692	3489261	.	-	.	ID=gene3243;Name=Y_RS16285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16285;old_locus_tag=y3170
NC_004088.1	Protein Homology	CDS	3488692	3489261	.	-	0	ID=cds3150;Parent=gene3243;Dbxref=Genbank:WP_002228638.1;Name=WP_002228638.1;gbkey=CDS;product=cleavage protein;protein_id=WP_002228638.1;transl_table=11
NC_004088.1	RefSeq	gene	3489248	3489466	.	-	.	ID=gene3244;Name=Y_RS16290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16290
NC_004088.1	Protein Homology	CDS	3489248	3489466	.	-	0	ID=cds3151;Parent=gene3244;Dbxref=Genbank:WP_002217548.1;Name=WP_002217548.1;gbkey=CDS;product=membrane protein;protein_id=WP_002217548.1;transl_table=11
NC_004088.1	RefSeq	gene	3489497	3490291	.	-	.	ID=gene3245;Name=Y_RS16295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16295;old_locus_tag=y3171
NC_004088.1	Protein Homology	CDS	3489497	3490291	.	-	0	ID=cds3152;Parent=gene3245;Dbxref=Genbank:WP_002211384.1;Name=WP_002211384.1;gbkey=CDS;product=thymidylate synthase;protein_id=WP_002211384.1;transl_table=11
NC_004088.1	RefSeq	gene	3490298	3491170	.	-	.	ID=gene3246;Name=Y_RS16300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16300;old_locus_tag=y3172
NC_004088.1	Protein Homology	CDS	3490298	3491170	.	-	0	ID=cds3153;Parent=gene3246;Dbxref=Genbank:WP_002211383.1;Name=WP_002211383.1;gbkey=CDS;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_002211383.1;transl_table=11
NC_004088.1	RefSeq	gene	3491421	3493667	.	-	.	ID=gene3247;Name=Y_RS16305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16305;old_locus_tag=y3173
NC_004088.1	Protein Homology	CDS	3491421	3493667	.	-	0	ID=cds3154;Parent=gene3247;Dbxref=Genbank:WP_002228076.1;Name=WP_002228076.1;Note=member of a second PTS chain involved in nitrogen metabolism%3B PtsP phosphorylates NPr;gbkey=CDS;product=phosphoenolpyruvate-protein phosphotransferase;protein_id=WP_002228076.1;transl_table=11
NC_004088.1	RefSeq	gene	3493680	3494207	.	-	.	ID=gene3248;Name=Y_RS16310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16310;old_locus_tag=y3174
NC_004088.1	Protein Homology	CDS	3493680	3494207	.	-	0	ID=cds3155;Parent=gene3248;Dbxref=Genbank:WP_002211381.1;Name=WP_002211381.1;Note=hydrolyzes diadenosine polyphosphate;gbkey=CDS;product=RNA pyrophosphohydrolase;protein_id=WP_002211381.1;transl_table=11
NC_004088.1	RefSeq	gene	3494233	3494484	.	-	.	ID=gene3249;Name=Y_RS16315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16315
NC_004088.1	Protein Homology	CDS	3494233	3494484	.	-	0	ID=cds3156;Parent=gene3249;Dbxref=Genbank:WP_002228075.1;Name=WP_002228075.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228075.1;transl_table=11
NC_004088.1	RefSeq	gene	3494481	3494672	.	-	.	ID=gene3250;Name=Y_RS16320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16320
NC_004088.1	Protein Homology	CDS	3494481	3494672	.	-	0	ID=cds3157;Parent=gene3250;Dbxref=Genbank:WP_002228074.1;Name=WP_002228074.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228074.1;transl_table=11
NC_004088.1	RefSeq	gene	3494905	3495591	.	+	.	ID=gene3251;Name=Y_RS16325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16325;old_locus_tag=y3175
NC_004088.1	Protein Homology	CDS	3494905	3495591	.	+	0	ID=cds3158;Parent=gene3251;Dbxref=Genbank:WP_002209838.1;Name=WP_002209838.1;gbkey=CDS;product=DNA mismatch repair protein MutH;protein_id=WP_002209838.1;transl_table=11
NC_004088.1	RefSeq	gene	3495962	3497002	.	+	.	ID=gene3252;Name=tas;gbkey=Gene;gene=tas;gene_biotype=protein_coding;locus_tag=Y_RS16330;old_locus_tag=y3177
NC_004088.1	Protein Homology	CDS	3495962	3497002	.	+	0	ID=cds3159;Parent=gene3252;Dbxref=Genbank:WP_002209839.1;Name=WP_002209839.1;Note=complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain%3B member of the aldo/keto reductase 2 family%3B crystal structure of purified Escherichia coli protein shows bound NADPH;gbkey=CDS;gene=tas;product=aldo-keto reductase;protein_id=WP_002209839.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3497058	3497226	.	+	.	ID=id387;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3497379	3497630	.	-	.	ID=gene3253;Name=Y_RS16335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16335
NC_004088.1	Protein Homology	CDS	3497379	3497630	.	-	0	ID=cds3160;Parent=gene3253;Dbxref=Genbank:WP_002209840.1;Name=WP_002209840.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209840.1;transl_table=11
NC_004088.1	RefSeq	gene	3497709	3497942	.	+	.	ID=gene3254;Name=Y_RS16340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16340;old_locus_tag=y3179
NC_004088.1	Protein Homology	CDS	3497709	3497942	.	+	0	ID=cds3161;Parent=gene3254;Dbxref=Genbank:WP_002228641.1;Name=WP_002228641.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228641.1;transl_table=11
NC_004088.1	RefSeq	gene	3497971	3499191	.	-	.	ID=gene3255;Name=Y_RS16345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16345;old_locus_tag=y3180
NC_004088.1	Protein Homology	CDS	3497971	3499191	.	-	0	ID=cds3162;Parent=gene3255;Dbxref=Genbank:WP_002209842.1;Name=WP_002209842.1;gbkey=CDS;product=lysophospholipid transporter LplT;protein_id=WP_002209842.1;transl_table=11
NC_004088.1	RefSeq	gene	3499188	3501344	.	-	.	ID=gene3256;Name=Y_RS16350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16350;old_locus_tag=y3181
NC_004088.1	Protein Homology	CDS	3499188	3501344	.	-	0	ID=cds3163;Parent=gene3256;Dbxref=Genbank:WP_002209843.1;Name=WP_002209843.1;Note=Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1;gbkey=CDS;product=bifunctional protein Aas;protein_id=WP_002209843.1;transl_table=11
NC_004088.1	RefSeq	gene	3501793	3504054	.	-	.	ID=gene3257;Name=Y_RS16355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16355;old_locus_tag=y3182
NC_004088.1	Protein Homology	CDS	3501793	3504054	.	-	0	ID=cds3164;Parent=gene3257;Dbxref=Genbank:WP_002209844.1;Name=WP_002209844.1;gbkey=CDS;product=biotin transporter BioY;protein_id=WP_002209844.1;transl_table=11
NC_004088.1	RefSeq	gene	3504364	3505386	.	+	.	ID=gene3258;Name=Y_RS16360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16360;old_locus_tag=y3183
NC_004088.1	Protein Homology	CDS	3504364	3505386	.	+	0	ID=cds3165;Parent=gene3258;Dbxref=Genbank:WP_002209845.1;Name=WP_002209845.1;Note=controls transcription of galETKM;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209845.1;transl_table=11
NC_004088.1	RefSeq	gene	3505383	3506645	.	-	.	ID=gene3259;Name=Y_RS16365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16365;old_locus_tag=y3184
NC_004088.1	Protein Homology	CDS	3505383	3506645	.	-	0	ID=cds3166;Parent=gene3259;Dbxref=Genbank:WP_002209846.1;Name=WP_002209846.1;Note=catalyzes the decarboxylation of diaminopimelate into lysine%3B pyridoxal phosphate(PLP)-binding;gbkey=CDS;product=diaminopimelate decarboxylase;protein_id=WP_002209846.1;transl_table=11
NC_004088.1	RefSeq	gene	3506860	3507801	.	+	.	ID=gene3260;Name=Y_RS16370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16370;old_locus_tag=y3185
NC_004088.1	Protein Homology	CDS	3506860	3507801	.	+	0	ID=cds3167;Parent=gene3260;Dbxref=Genbank:WP_002209847.1;Name=WP_002209847.1;Note=activates the transcription of the lysA gene encoding diaminopimelate decarboxylase;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209847.1;transl_table=11
NC_004088.1	RefSeq	gene	3507798	3508958	.	-	.	ID=gene3261;Name=Y_RS16375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16375;old_locus_tag=y3186
NC_004088.1	Protein Homology	CDS	3507798	3508958	.	-	0	ID=cds3168;Parent=gene3261;Dbxref=Genbank:WP_002209848.1;Name=WP_002209848.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002209848.1;transl_table=11
NC_004088.1	RefSeq	gene	3509327	3510235	.	-	.	ID=gene3262;Name=Y_RS16380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16380;old_locus_tag=y3187
NC_004088.1	Protein Homology	CDS	3509327	3510235	.	-	0	ID=cds3169;Parent=gene3262;Dbxref=Genbank:WP_002209849.1;Name=WP_002209849.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002209849.1;transl_table=11
NC_004088.1	RefSeq	gene	3510342	3511229	.	+	.	ID=gene3263;Name=Y_RS16385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16385;old_locus_tag=y3188
NC_004088.1	Protein Homology	CDS	3510342	3511229	.	+	0	ID=cds3170;Parent=gene3263;Dbxref=Genbank:WP_002209850.1;Name=WP_002209850.1;gbkey=CDS;product=MBL fold metallo-hydrolase;protein_id=WP_002209850.1;transl_table=11
NC_004088.1	RefSeq	gene	3511342	3511977	.	+	.	ID=gene3264;Name=Y_RS16390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16390;old_locus_tag=y3189
NC_004088.1	Protein Homology	CDS	3511342	3511977	.	+	0	ID=cds3171;Parent=gene3264;Dbxref=Genbank:WP_002209852.1;Name=WP_002209852.1;gbkey=CDS;product=protein-disulfide isomerase;protein_id=WP_002209852.1;transl_table=11
NC_004088.1	RefSeq	gene	3511963	3513654	.	-	.	ID=gene3265;Name=Y_RS16395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16395;old_locus_tag=y3190
NC_004088.1	Protein Homology	CDS	3511963	3513654	.	-	0	ID=cds3172;Parent=gene3265;Dbxref=Genbank:WP_002209853.1;Name=WP_002209853.1;gbkey=CDS;product=chemotaxis protein;protein_id=WP_002209853.1;transl_table=11
NC_004088.1	RefSeq	gene	3513809	3514210	.	-	.	ID=gene3266;Name=Y_RS16400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16400;old_locus_tag=y3191
NC_004088.1	Protein Homology	CDS	3513809	3514210	.	-	0	ID=cds3173;Parent=gene3266;Dbxref=Genbank:WP_002214100.1;Name=WP_002214100.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214100.1;transl_table=11
NC_004088.1	RefSeq	gene	3514207	3514923	.	-	.	ID=gene3267;Name=Y_RS16405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16405;old_locus_tag=y3192
NC_004088.1	Protein Homology	CDS	3514207	3514923	.	-	0	ID=cds3174;Parent=gene3267;Dbxref=Genbank:WP_002214099.1;Name=WP_002214099.1;gbkey=CDS;product=regulatory membrane protein;protein_id=WP_002214099.1;transl_table=11
NC_004088.1	RefSeq	gene	3515207	3515527	.	+	.	ID=gene3268;Name=Y_RS16410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16410;old_locus_tag=y3194
NC_004088.1	Protein Homology	CDS	3515207	3515527	.	+	0	ID=cds3175;Parent=gene3268;Dbxref=Genbank:WP_002425664.1;Name=WP_002425664.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002425664.1;transl_table=11
NC_004088.1	RefSeq	gene	3515572	3516411	.	-	.	ID=gene3269;Name=Y_RS16415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16415;old_locus_tag=y3195
NC_004088.1	Protein Homology	CDS	3515572	3516411	.	-	0	ID=cds3176;Parent=gene3269;Dbxref=Genbank:WP_002209856.1;Name=WP_002209856.1;gbkey=CDS;product=prepilin peptidase;protein_id=WP_002209856.1;transl_table=11
NC_004088.1	RefSeq	gene	3516440	3516889	.	-	.	ID=gene3270;Name=Y_RS16420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16420;old_locus_tag=y3196
NC_004088.1	Protein Homology	CDS	3516440	3516889	.	-	0	ID=cds3177;Parent=gene3270;Dbxref=Genbank:WP_002226092.1;Name=WP_002226092.1;gbkey=CDS;product=membrane protein;protein_id=WP_002226092.1;transl_table=11
NC_004088.1	RefSeq	gene	3516898	3518088	.	-	.	ID=gene3271;Name=Y_RS16425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16425;old_locus_tag=y3197
NC_004088.1	Protein Homology	CDS	3516898	3518088	.	-	0	ID=cds3178;Parent=gene3271;Dbxref=Genbank:WP_002209858.1;Name=WP_002209858.1;gbkey=CDS;product=type II secretion system protein GspL;protein_id=WP_002209858.1;transl_table=11
NC_004088.1	RefSeq	gene	3518072	3518968	.	-	.	ID=gene3272;Name=Y_RS16430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16430;old_locus_tag=y3198
NC_004088.1	Protein Homology	CDS	3518072	3518968	.	-	0	ID=cds3179;Parent=gene3272;Dbxref=Genbank:WP_002209859.1;Name=WP_002209859.1;gbkey=CDS;product=general secretion pathway protein GspK;protein_id=WP_002209859.1;transl_table=11
NC_004088.1	RefSeq	gene	3519037	3519633	.	-	.	ID=gene3273;Name=Y_RS16435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16435;old_locus_tag=y3199
NC_004088.1	Protein Homology	CDS	3519037	3519633	.	-	0	ID=cds3180;Parent=gene3273;Dbxref=Genbank:WP_002223730.1;Name=WP_002223730.1;gbkey=CDS;product=type II secretion system protein GspJ;protein_id=WP_002223730.1;transl_table=11
NC_004088.1	RefSeq	gene	3519626	3519916	.	-	.	ID=gene3274;Name=Y_RS16440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16440
NC_004088.1	Protein Homology	CDS	3519626	3519916	.	-	0	ID=cds3181;Parent=gene3274;Dbxref=Genbank:WP_002214093.1;Name=WP_002214093.1;gbkey=CDS;product=general secretion pathway protein GspI;protein_id=WP_002214093.1;transl_table=11
NC_004088.1	RefSeq	gene	3520008	3520550	.	-	.	ID=gene3275;Name=Y_RS16445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16445;old_locus_tag=y3200
NC_004088.1	Protein Homology	CDS	3520008	3520550	.	-	0	ID=cds3182;Parent=gene3275;Dbxref=Genbank:WP_002214092.1;Name=WP_002214092.1;gbkey=CDS;product=general secretion pathway protein GspH;protein_id=WP_002214092.1;transl_table=11
NC_004088.1	RefSeq	gene	3520555	3520992	.	-	.	ID=gene3276;Name=Y_RS16450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16450;old_locus_tag=y3201
NC_004088.1	Protein Homology	CDS	3520555	3520992	.	-	0	ID=cds3183;Parent=gene3276;Dbxref=Genbank:WP_002209862.1;Name=WP_002209862.1;gbkey=CDS;product=type II secretion system protein GspG;protein_id=WP_002209862.1;transl_table=11
NC_004088.1	RefSeq	gene	3521012	3522058	.	-	.	ID=gene3277;Name=Y_RS16455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16455;old_locus_tag=y3202
NC_004088.1	Protein Homology	CDS	3521012	3522058	.	-	0	ID=cds3184;Parent=gene3277;Dbxref=Genbank:WP_002229014.1;Name=WP_002229014.1;gbkey=CDS;product=type II secretion system protein F;protein_id=WP_002229014.1;transl_table=11
NC_004088.1	RefSeq	gene	3522019	3522213	.	-	.	ID=gene3278;Name=Y_RS16460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16460
NC_004088.1	Protein Homology	CDS	3522019	3522213	.	-	0	ID=cds3185;Parent=gene3278;Dbxref=Genbank:WP_002214090.1;Name=WP_002214090.1;gbkey=CDS;product=general secretion pathway protein GspF;protein_id=WP_002214090.1;transl_table=11
NC_004088.1	RefSeq	gene	3522200	3523711	.	-	.	ID=gene3279;Name=Y_RS16465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16465;old_locus_tag=y3203
NC_004088.1	Protein Homology	CDS	3522200	3523711	.	-	0	ID=cds3186;Parent=gene3279;Dbxref=Genbank:WP_002209863.1;Name=WP_002209863.1;gbkey=CDS;product=type II secretion system protein GspE;protein_id=WP_002209863.1;transl_table=11
NC_004088.1	RefSeq	gene	3523708	3525630	.	-	.	ID=gene3280;Name=Y_RS16470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16470;old_locus_tag=y3204
NC_004088.1	Protein Homology	CDS	3523708	3525630	.	-	0	ID=cds3187;Parent=gene3280;Dbxref=Genbank:WP_002220086.1;Name=WP_002220086.1;gbkey=CDS;product=type II secretion system protein GspD;protein_id=WP_002220086.1;transl_table=11
NC_004088.1	RefSeq	gene	3525711	3526112	.	-	.	ID=gene3281;Name=Y_RS16475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16475
NC_004088.1	Protein Homology	CDS	3525711	3526112	.	-	0	ID=cds3188;Parent=gene3281;Dbxref=Genbank:WP_002209865.1;Name=WP_002209865.1;gbkey=CDS;product=general secretion pathway protein GspC;protein_id=WP_002209865.1;transl_table=11
NC_004088.1	RefSeq	gene	3526282	3526698	.	-	.	ID=gene3282;Name=Y_RS16480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16480;old_locus_tag=y3206
NC_004088.1	Protein Homology	CDS	3526282	3526698	.	-	0	ID=cds3189;Parent=gene3282;Dbxref=Genbank:WP_002209866.1;Name=WP_002209866.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209866.1;transl_table=11
NC_004088.1	RefSeq	gene	3527441	3528196	.	-	.	ID=gene3283;Name=Y_RS16485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16485;old_locus_tag=y3207
NC_004088.1	Protein Homology	CDS	3527441	3528196	.	-	0	ID=cds3190;Parent=gene3283;Dbxref=Genbank:WP_002220090.1;Name=WP_002220090.1;gbkey=CDS;product=carbonic anhydrase;protein_id=WP_002220090.1;transl_table=11
NC_004088.1	RefSeq	gene	3528692	3528880	.	+	.	ID=gene3284;Name=Y_RS16490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16490
NC_004088.1	Protein Homology	CDS	3528692	3528880	.	+	0	ID=cds3191;Parent=gene3284;Dbxref=Genbank:WP_002214085.1;Name=WP_002214085.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214085.1;transl_table=11
NC_004088.1	RefSeq	gene	3529267	3529461	.	+	.	ID=gene3285;Name=Y_RS16495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16495
NC_004088.1	Protein Homology	CDS	3529267	3529461	.	+	0	ID=cds3192;Parent=gene3285;Dbxref=Genbank:WP_002214083.1;Name=WP_002214083.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214083.1;transl_table=11
NC_004088.1	RefSeq	gene	3529483	3530433	.	+	.	ID=gene3286;Name=Y_RS16500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16500;old_locus_tag=y3209
NC_004088.1	Protein Homology	CDS	3529483	3530433	.	+	0	ID=cds3193;Parent=gene3286;Dbxref=Genbank:WP_002209868.1;Name=WP_002209868.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209868.1;transl_table=11
NC_004088.1	RefSeq	gene	3530548	3532734	.	+	.	ID=gene3287;Name=Y_RS16505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16505;old_locus_tag=y3210
NC_004088.1	Protein Homology	CDS	3530548	3532734	.	+	0	ID=cds3194;Parent=gene3287;Dbxref=Genbank:WP_002209869.1;Name=WP_002209869.1;gbkey=CDS;product=autotransporter;protein_id=WP_002209869.1;transl_table=11
NC_004088.1	RefSeq	gene	3532804	3535917	.	+	.	ID=gene3288;Name=Y_RS16510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16510;old_locus_tag=y3211
NC_004088.1	Protein Homology	CDS	3532804	3535917	.	+	0	ID=cds3195;Parent=gene3288;Dbxref=Genbank:WP_011055718.1;Name=WP_011055718.1;gbkey=CDS;product=chondroitin ABC lyase;protein_id=WP_011055718.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3535988	3538826	.	+	.	ID=id388;gbkey=repeat_region
NC_004088.1	RefSeq	region	3535992	3536197	.	+	.	ID=id389;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	region	3536196	3538149	.	-	.	ID=id390;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3536262	3537041	.	-	.	ID=gene3289;Name=Y_RS16515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16515;old_locus_tag=y3212
NC_004088.1	Protein Homology	CDS	3536262	3537041	.	-	0	ID=cds3196;Parent=gene3289;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	3537041	3538063	.	-	.	ID=gene3290;Name=Y_RS16520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16520;old_locus_tag=y3213
NC_004088.1	Protein Homology	CDS	3537041	3538063	.	-	0	ID=cds3197;Parent=gene3290;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	3538120	3538554	.	+	.	ID=gene3291;Name=Y_RS16525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16525;old_locus_tag=y3214
NC_004088.1	Protein Homology	CDS	3538120	3538554	.	+	0	ID=cds3198;Parent=gene3291;Dbxref=Genbank:WP_002209872.1;Name=WP_002209872.1;gbkey=CDS;product=transposase;protein_id=WP_002209872.1;transl_table=11
NC_004088.1	RefSeq	region	3538149	3538660	.	+	.	ID=id391;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3539006	3540559	.	-	.	ID=gene3292;Name=Y_RS16530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16530;old_locus_tag=y3215
NC_004088.1	Protein Homology	CDS	3539006	3540559	.	-	0	ID=cds3199;Parent=gene3292;Dbxref=Genbank:WP_002209873.1;Name=WP_002209873.1;gbkey=CDS;product=sulfatase;protein_id=WP_002209873.1;transl_table=11
NC_004088.1	RefSeq	gene	3541399	3542175	.	+	.	ID=gene3293;Name=Y_RS16535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16535;old_locus_tag=y3216
NC_004088.1	Protein Homology	CDS	3541399	3542175	.	+	0	ID=cds3200;Parent=gene3293;Dbxref=Genbank:WP_002209875.1;Name=WP_002209875.1;Note=transcriptional repressor for the agaZVWA and agaSYBCDI operons;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_002209875.1;transl_table=11
NC_004088.1	RefSeq	gene	3542225	3543523	.	+	.	ID=gene3294;Name=Y_RS16540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16540;old_locus_tag=y3217
NC_004088.1	Protein Homology	CDS	3542225	3543523	.	+	0	ID=cds3201;Parent=gene3294;Dbxref=Genbank:WP_002209876.1;Name=WP_002209876.1;Note=with KbaY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1%2C6-bisphosphate%3B subunit Z may act as a chaperone for the Y subunit;gbkey=CDS;product=tagatose 6-phosphate kinase;protein_id=WP_002209876.1;transl_table=11
NC_004088.1	RefSeq	gene	3543520	3544686	.	+	.	ID=gene3295;Name=Y_RS16545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16545;old_locus_tag=y3218
NC_004088.1	Protein Homology	CDS	3543520	3544686	.	+	0	ID=cds3202;Parent=gene3295;Dbxref=Genbank:WP_002209877.1;Name=WP_002209877.1;gbkey=CDS;product=aldose isomerase;protein_id=WP_002209877.1;transl_table=11
NC_004088.1	RefSeq	gene	3544704	3545201	.	+	.	ID=gene3296;Name=Y_RS16550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16550;old_locus_tag=y3219
NC_004088.1	Protein Homology	CDS	3544704	3545201	.	+	0	ID=cds3203;Parent=gene3296;Dbxref=Genbank:WP_002209878.1;Name=WP_002209878.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake%3B involved in N-acetylgalactosamine transport;gbkey=CDS;product=PTS N-acetylgalactosamine transporter subunit IIB;protein_id=WP_002209878.1;transl_table=11
NC_004088.1	RefSeq	gene	3545248	3546036	.	+	.	ID=gene3297;Name=Y_RS16555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16555;old_locus_tag=y3220
NC_004088.1	Protein Homology	CDS	3545248	3546036	.	+	0	ID=cds3204;Parent=gene3297;Dbxref=Genbank:WP_002209879.1;Name=WP_002209879.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake%3Binvolved in N-acetylgalactosamine transport;gbkey=CDS;product=PTS acetylgalactosamine transporter subunit IIC;protein_id=WP_002209879.1;transl_table=11
NC_004088.1	RefSeq	gene	3546026	3546915	.	+	.	ID=gene3298;Name=Y_RS16560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS16560;old_locus_tag=y3221;pseudo=true
NC_004088.1	Protein Homology	CDS	3546026	3546915	.	+	0	ID=cds3205;Parent=gene3298;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IID with IIC forms the translocation channel%3B involved in N-acetylgalactosamine transport;exception=annotated by transcript or proteomic data;gbkey=CDS;product=PTS N-acetylgalactosamine transporter subunit IID;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3547001	3547441	.	+	.	ID=gene3299;Name=Y_RS16565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16565;old_locus_tag=y3222
NC_004088.1	Protein Homology	CDS	3547001	3547441	.	+	0	ID=cds3206;Parent=gene3299;Dbxref=Genbank:WP_002209881.1;Name=WP_002209881.1;gbkey=CDS;product=PTS mannose transporter subunit IIA;protein_id=WP_002209881.1;transl_table=11
NC_004088.1	RefSeq	gene	3547444	3548610	.	+	.	ID=gene3300;Name=Y_RS16570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16570;old_locus_tag=y3223
NC_004088.1	Protein Homology	CDS	3547444	3548610	.	+	0	ID=cds3207;Parent=gene3300;Dbxref=Genbank:WP_002209882.1;Name=WP_002209882.1;gbkey=CDS;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_002209882.1;transl_table=11
NC_004088.1	RefSeq	gene	3548806	3549561	.	+	.	ID=gene3301;Name=Y_RS16575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16575;old_locus_tag=y3224
NC_004088.1	Protein Homology	CDS	3548806	3549561	.	+	0	ID=cds3208;Parent=gene3301;Dbxref=Genbank:WP_002209883.1;Name=WP_002209883.1;Note=catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate;gbkey=CDS;product=2-deoxy-D-gluconate 3-dehydrogenase;protein_id=WP_002209883.1;transl_table=11
NC_004088.1	RefSeq	gene	3549577	3550635	.	+	.	ID=gene3302;Name=Y_RS16580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16580;old_locus_tag=y3225
NC_004088.1	Protein Homology	CDS	3549577	3550635	.	+	0	ID=cds3209;Parent=gene3302;Dbxref=Genbank:WP_002209884.1;Name=WP_002209884.1;gbkey=CDS;product=glycosyl hydrolase family 88;protein_id=WP_002209884.1;transl_table=11
NC_004088.1	RefSeq	gene	3550879	3552105	.	+	.	ID=gene3303;Name=Y_RS16585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16585;old_locus_tag=y3226
NC_004088.1	Protein Homology	CDS	3550879	3552105	.	+	0	ID=cds3210;Parent=gene3303;Dbxref=Genbank:WP_002209885.1;Name=WP_002209885.1;gbkey=CDS;product=anaerobic sulfatase maturase;protein_id=WP_002209885.1;transl_table=11
NC_004088.1	RefSeq	gene	3552126	3553733	.	+	.	ID=gene3304;Name=Y_RS16590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16590;old_locus_tag=y3227
NC_004088.1	Protein Homology	CDS	3552126	3553733	.	+	0	ID=cds3211;Parent=gene3304;Dbxref=Genbank:WP_002209886.1;Name=WP_002209886.1;gbkey=CDS;product=sulfatase;protein_id=WP_002209886.1;transl_table=11
NC_004088.1	RefSeq	gene	3553856	3555343	.	+	.	ID=gene3305;Name=Y_RS16595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16595;old_locus_tag=y3228
NC_004088.1	Protein Homology	CDS	3553856	3555343	.	+	0	ID=cds3212;Parent=gene3305;Dbxref=Genbank:WP_002209887.1;Name=WP_002209887.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209887.1;transl_table=11
NC_004088.1	RefSeq	gene	3555452	3556306	.	+	.	ID=gene3306;Name=gatY;gbkey=Gene;gene=gatY;gene_biotype=protein_coding;locus_tag=Y_RS16600;old_locus_tag=y3229
NC_004088.1	Protein Homology	CDS	3555452	3556306	.	+	0	ID=cds3213;Parent=gene3306;Dbxref=Genbank:WP_002209888.1;Name=WP_002209888.1;Note=catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1%2C6-bisphosphate%3B in enteric bacteria there are two D-tagatose 1%2C6-bisphosphate-specific aldolases: KbaY (also called AgaY)%2C involved in catabolism of N-acetyl-galactosamine and D-galactosamine%2C and GatY which is part of the galactitol catabolism pathway;gbkey=CDS;gene=gatY;product=fructose-bisphosphate aldolase;protein_id=WP_002209888.1;transl_table=11
NC_004088.1	RefSeq	gene	3556330	3556908	.	+	.	ID=gene3307;Name=Y_RS16605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16605;old_locus_tag=y3230
NC_004088.1	Protein Homology	CDS	3556330	3556908	.	+	0	ID=cds3214;Parent=gene3307;Dbxref=Genbank:WP_002209889.1;Name=WP_002209889.1;gbkey=CDS;product=thiamine biogenesis protein ThiJ;protein_id=WP_002209889.1;transl_table=11
NC_004088.1	RefSeq	gene	3556878	3557159	.	-	.	ID=gene3308;Name=Y_RS16610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16610
NC_004088.1	Protein Homology	CDS	3556878	3557159	.	-	0	ID=cds3215;Parent=gene3308;Dbxref=Genbank:WP_002215765.1;Name=WP_002215765.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215765.1;transl_table=11
NC_004088.1	RefSeq	gene	3557149	3558231	.	-	.	ID=gene3309;Name=Y_RS16615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16615;old_locus_tag=y3231
NC_004088.1	Protein Homology	CDS	3557149	3558231	.	-	0	ID=cds3216;Parent=gene3309;Dbxref=Genbank:WP_002209890.1;Name=WP_002209890.1;gbkey=CDS;product=cytochrome C peroxidase;protein_id=WP_002209890.1;transl_table=11
NC_004088.1	RefSeq	gene	3558625	3559932	.	+	.	ID=gene3310;Name=Y_RS16620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16620;old_locus_tag=y3232
NC_004088.1	Protein Homology	CDS	3558625	3559932	.	+	0	ID=cds3217;Parent=gene3310;Dbxref=Genbank:WP_002209891.1;Name=WP_002209891.1;Note=involved in the transport of aldohexuronates;gbkey=CDS;product=sugar transporter;protein_id=WP_002209891.1;transl_table=11
NC_004088.1	RefSeq	gene	3560083	3562458	.	+	.	ID=gene3311;Name=Y_RS16625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16625;old_locus_tag=y3233
NC_004088.1	Protein Homology	CDS	3560083	3562458	.	+	0	ID=cds3218;Parent=gene3311;Dbxref=Genbank:WP_002209892.1;Name=WP_002209892.1;gbkey=CDS;product=alpha-glucosidase;protein_id=WP_002209892.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3562501	3562672	.	+	.	ID=id392;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3562787	3563860	.	-	.	ID=gene3312;Name=lacI;gbkey=Gene;gene=lacI;gene_biotype=protein_coding;locus_tag=Y_RS16630;old_locus_tag=y3234
NC_004088.1	Protein Homology	CDS	3562787	3563860	.	-	0	ID=cds3219;Parent=gene3312;Dbxref=Genbank:WP_002209894.1;Name=WP_002209894.1;Note=transcriptional repressor of lac operon%3B forms a homotetramer as a dimer of dimers%3B binds specific sites in lac operon resulting in DNA looping between the operators%3B binds allolactose as inducer;gbkey=CDS;gene=lacI;product=lac repressor;protein_id=WP_002209894.1;transl_table=11
NC_004088.1	RefSeq	gene	3564132	3565391	.	+	.	ID=gene3313;Name=Y_RS16635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16635;old_locus_tag=y3235
NC_004088.1	Protein Homology	CDS	3564132	3565391	.	+	0	ID=cds3220;Parent=gene3313;Dbxref=Genbank:WP_002215759.1;Name=WP_002215759.1;Note=porin involved in the transport of maltose and maltodextrins;gbkey=CDS;product=maltoporin;protein_id=WP_002215759.1;transl_table=11
NC_004088.1	RefSeq	gene	3565764	3566075	.	-	.	ID=gene3314;Name=Y_RS16640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16640;old_locus_tag=y3236
NC_004088.1	Protein Homology	CDS	3565764	3566075	.	-	0	ID=cds3221;Parent=gene3314;Dbxref=Genbank:WP_002209896.1;Name=WP_002209896.1;gbkey=CDS;product=PTS sugar transporter;protein_id=WP_002209896.1;transl_table=11
NC_004088.1	RefSeq	gene	3566187	3568247	.	-	.	ID=gene3315;Name=Y_RS16645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16645;old_locus_tag=y3237
NC_004088.1	Protein Homology	CDS	3566187	3568247	.	-	0	ID=cds3222;Parent=gene3315;Dbxref=Genbank:WP_002209897.1;Name=WP_002209897.1;gbkey=CDS;product=beta-galactosidase;protein_id=WP_002209897.1;transl_table=11
NC_004088.1	RefSeq	gene	3568298	3569500	.	-	.	ID=gene3316;Name=Y_RS16650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16650;old_locus_tag=y3238
NC_004088.1	Protein Homology	CDS	3568298	3569500	.	-	0	ID=cds3223;Parent=gene3316;Dbxref=Genbank:WP_002209898.1;Name=WP_002209898.1;gbkey=CDS;product=galactosidase;protein_id=WP_002209898.1;transl_table=11
NC_004088.1	RefSeq	gene	3569505	3570356	.	-	.	ID=gene3317;Name=Y_RS16655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16655;old_locus_tag=y3239
NC_004088.1	Protein Homology	CDS	3569505	3570356	.	-	0	ID=cds3224;Parent=gene3317;Dbxref=Genbank:WP_002209899.1;Name=WP_002209899.1;gbkey=CDS;product=arabinogalactan ABC transporter permease;protein_id=WP_002209899.1;transl_table=11
NC_004088.1	RefSeq	gene	3570368	3571675	.	-	.	ID=gene3318;Name=Y_RS16660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16660;old_locus_tag=y3240
NC_004088.1	Protein Homology	CDS	3570368	3571675	.	-	0	ID=cds3225;Parent=gene3318;Dbxref=Genbank:WP_002209900.1;Name=WP_002209900.1;gbkey=CDS;product=arabinogalactan ABC transporter permease;protein_id=WP_002209900.1;transl_table=11
NC_004088.1	RefSeq	gene	3571835	3573070	.	-	.	ID=gene3319;Name=Y_RS16665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16665;old_locus_tag=y3241
NC_004088.1	Protein Homology	CDS	3571835	3573070	.	-	0	ID=cds3226;Parent=gene3319;Dbxref=Genbank:WP_002209901.1;Name=WP_002209901.1;gbkey=CDS;product=cyclodextrin-binding protein;protein_id=WP_002209901.1;transl_table=11
NC_004088.1	RefSeq	gene	3573433	3574539	.	+	.	ID=gene3320;Name=Y_RS16670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16670;old_locus_tag=y3242
NC_004088.1	Protein Homology	CDS	3573433	3574539	.	+	0	ID=cds3227;Parent=gene3320;Dbxref=Genbank:WP_002223743.1;Name=WP_002223743.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002223743.1;transl_table=11
NC_004088.1	RefSeq	gene	3575088	3576596	.	+	.	ID=gene3321;Name=Y_RS16675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16675;old_locus_tag=y3243
NC_004088.1	Protein Homology	CDS	3575088	3576596	.	+	0	ID=cds3228;Parent=gene3321;Dbxref=Genbank:WP_002209903.1;Name=WP_002209903.1;Note=with RbsBCD acts to import ribose into the cell%3B RbsA contains 2 ATP-binding domain;gbkey=CDS;product=enolase;protein_id=WP_002209903.1;transl_table=11
NC_004088.1	RefSeq	gene	3576668	3577672	.	+	.	ID=gene3322;Name=Y_RS16680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16680;old_locus_tag=y3244
NC_004088.1	Protein Homology	CDS	3576668	3577672	.	+	0	ID=cds3229;Parent=gene3322;Dbxref=Genbank:WP_002209904.1;Name=WP_002209904.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002209904.1;transl_table=11
NC_004088.1	RefSeq	gene	3578107	3579108	.	+	.	ID=gene3323;Name=Y_RS16685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16685;old_locus_tag=y3245
NC_004088.1	Protein Homology	CDS	3578107	3579108	.	+	0	ID=cds3230;Parent=gene3323;Dbxref=Genbank:WP_002209906.1;Name=WP_002209906.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002209906.1;transl_table=11
NC_004088.1	RefSeq	gene	3579887	3580405	.	+	.	ID=gene3324;Name=Y_RS16690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16690;old_locus_tag=y3246
NC_004088.1	Protein Homology	CDS	3579887	3580405	.	+	0	ID=cds3231;Parent=gene3324;Dbxref=Genbank:WP_002209907.1;Name=WP_002209907.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209907.1;transl_table=11
NC_004088.1	RefSeq	gene	3580781	3581638	.	+	.	ID=gene3325;Name=Y_RS16695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16695;old_locus_tag=y3247
NC_004088.1	Protein Homology	CDS	3580781	3581638	.	+	0	ID=cds3232;Parent=gene3325;Dbxref=Genbank:WP_002209908.1;Name=WP_002209908.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209908.1;transl_table=11
NC_004088.1	RefSeq	gene	3582062	3582742	.	+	.	ID=gene3326;Name=Y_RS16700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16700;old_locus_tag=y3249
NC_004088.1	Protein Homology	CDS	3582062	3582742	.	+	0	ID=cds3233;Parent=gene3326;Dbxref=Genbank:WP_002209909.1;Name=WP_002209909.1;gbkey=CDS;product=PadR family transcriptional regulator;protein_id=WP_002209909.1;transl_table=11
NC_004088.1	RefSeq	gene	3582742	3583062	.	+	.	ID=gene3327;Name=Y_RS16705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16705;old_locus_tag=y3250
NC_004088.1	Protein Homology	CDS	3582742	3583062	.	+	0	ID=cds3234;Parent=gene3327;Dbxref=Genbank:WP_002209910.1;Name=WP_002209910.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209910.1;transl_table=11
NC_004088.1	RefSeq	gene	3583145	3583411	.	-	.	ID=gene3328;Name=Y_RS16710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16710;old_locus_tag=y3251
NC_004088.1	Protein Homology	CDS	3583145	3583411	.	-	0	ID=cds3235;Parent=gene3328;Dbxref=Genbank:WP_002209911.1;Name=WP_002209911.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209911.1;transl_table=11
NC_004088.1	RefSeq	gene	3583667	3584446	.	-	.	ID=gene3329;Name=Y_RS16715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16715;old_locus_tag=y3252
NC_004088.1	Protein Homology	CDS	3583667	3584446	.	-	0	ID=cds3236;Parent=gene3329;Dbxref=Genbank:WP_002209912.1;Name=WP_002209912.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209912.1;transl_table=11
NC_004088.1	RefSeq	gene	3584527	3584739	.	-	.	ID=gene3330;Name=Y_RS16720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16720
NC_004088.1	Protein Homology	CDS	3584527	3584739	.	-	0	ID=cds3237;Parent=gene3330;Dbxref=Genbank:WP_002214799.1;Name=WP_002214799.1;gbkey=CDS;product=membrane protein;protein_id=WP_002214799.1;transl_table=11
NC_004088.1	RefSeq	gene	3585051	3585818	.	-	.	ID=gene3331;Name=Y_RS16725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16725;old_locus_tag=y3253
NC_004088.1	Protein Homology	CDS	3585051	3585818	.	-	0	ID=cds3238;Parent=gene3331;Dbxref=Genbank:WP_002209913.1;Name=WP_002209913.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209913.1;transl_table=11
NC_004088.1	RefSeq	gene	3585788	3587947	.	-	.	ID=gene3332;Name=Y_RS16730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16730;old_locus_tag=y3254
NC_004088.1	Protein Homology	CDS	3585788	3587947	.	-	0	ID=cds3239;Parent=gene3332;Dbxref=Genbank:WP_002209914.1;Name=WP_002209914.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209914.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3588184	3588547	.	+	.	ID=id393;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3588357	3588641	.	-	.	ID=gene3333;Name=Y_RS16735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16735
NC_004088.1	Protein Homology	CDS	3588357	3588641	.	-	0	ID=cds3240;Parent=gene3333;Dbxref=Genbank:WP_002214798.1;Name=WP_002214798.1;gbkey=CDS;product=colicin immunity protein;protein_id=WP_002214798.1;transl_table=11
NC_004088.1	RefSeq	gene	3588688	3588891	.	-	.	ID=gene3334;Name=Y_RS16740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16740
NC_004088.1	Protein Homology	CDS	3588688	3588891	.	-	0	ID=cds3241;Parent=gene3334;Dbxref=Genbank:WP_002209915.1;Name=WP_002209915.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209915.1;transl_table=11
NC_004088.1	RefSeq	gene	3589264	3589458	.	-	.	ID=gene3335;Name=Y_RS16745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16745
NC_004088.1	Protein Homology	CDS	3589264	3589458	.	-	0	ID=cds3242;Parent=gene3335;Dbxref=Genbank:WP_002214795.1;Name=WP_002214795.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214795.1;transl_table=11
NC_004088.1	RefSeq	gene	3589455	3590993	.	-	.	ID=gene3336;Name=Y_RS16750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16750;old_locus_tag=y3255
NC_004088.1	Protein Homology	CDS	3589455	3590993	.	-	0	ID=cds3243;Parent=gene3336;Dbxref=Genbank:WP_002214794.1;Name=WP_002214794.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214794.1;transl_table=11
NC_004088.1	RefSeq	gene	3591500	3592642	.	-	.	ID=gene3337;Name=Y_RS16755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16755;old_locus_tag=y3256
NC_004088.1	Protein Homology	CDS	3591500	3592642	.	-	0	ID=cds3244;Parent=gene3337;Dbxref=Genbank:WP_002209918.1;Name=WP_002209918.1;gbkey=CDS;product=Fic family protein;protein_id=WP_002209918.1;transl_table=11
NC_004088.1	RefSeq	gene	3592911	3593276	.	+	.	ID=gene3338;Name=Y_RS16760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16760;old_locus_tag=y3257
NC_004088.1	Protein Homology	CDS	3592911	3593276	.	+	0	ID=cds3245;Parent=gene3338;Dbxref=Genbank:WP_002209919.1;Name=WP_002209919.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209919.1;transl_table=11
NC_004088.1	RefSeq	gene	3593289	3593525	.	+	.	ID=gene3339;Name=Y_RS16765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16765;old_locus_tag=y3258
NC_004088.1	Protein Homology	CDS	3593289	3593525	.	+	0	ID=cds3246;Parent=gene3339;Dbxref=Genbank:WP_002214792.1;Name=WP_002214792.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214792.1;transl_table=11
NC_004088.1	RefSeq	gene	3593531	3593863	.	+	.	ID=gene3340;Name=Y_RS16770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16770;old_locus_tag=y3259
NC_004088.1	Protein Homology	CDS	3593531	3593863	.	+	0	ID=cds3247;Parent=gene3340;Dbxref=Genbank:WP_002214791.1;Name=WP_002214791.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214791.1;transl_table=11
NC_004088.1	RefSeq	gene	3594045	3594245	.	+	.	ID=gene3341;Name=Y_RS16775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16775;old_locus_tag=y3260
NC_004088.1	Protein Homology	CDS	3594045	3594245	.	+	0	ID=cds3248;Parent=gene3341;Dbxref=Genbank:WP_002209920.1;Name=WP_002209920.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209920.1;transl_table=11
NC_004088.1	RefSeq	gene	3594259	3594411	.	-	.	ID=gene3342;Name=Y_RS16780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16780
NC_004088.1	Protein Homology	CDS	3594259	3594411	.	-	0	ID=cds3249;Parent=gene3342;Dbxref=Genbank:WP_002209921.1;Name=WP_002209921.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209921.1;transl_table=11
NC_004088.1	RefSeq	gene	3594404	3594730	.	-	.	ID=gene3343;Name=Y_RS16785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16785
NC_004088.1	Protein Homology	CDS	3594404	3594730	.	-	0	ID=cds3250;Parent=gene3343;Dbxref=Genbank:WP_002209922.1;Name=WP_002209922.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209922.1;transl_table=11
NC_004088.1	RefSeq	gene	3595030	3597321	.	+	.	ID=gene3344;Name=Y_RS16790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16790;old_locus_tag=y3265
NC_004088.1	Protein Homology	CDS	3595030	3597321	.	+	0	ID=cds3251;Parent=gene3344;Dbxref=Genbank:WP_002209923.1;Name=WP_002209923.1;gbkey=CDS;product=DNA primase;protein_id=WP_002209923.1;transl_table=11
NC_004088.1	RefSeq	gene	3597721	3598119	.	-	.	ID=gene3345;Name=Y_RS16795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16795;old_locus_tag=y3266
NC_004088.1	Protein Homology	CDS	3597721	3598119	.	-	0	ID=cds3252;Parent=gene3345;Dbxref=Genbank:WP_002209924.1;Name=WP_002209924.1;gbkey=CDS;product=antitoxin;protein_id=WP_002209924.1;transl_table=11
NC_004088.1	RefSeq	gene	3598119	3598415	.	-	.	ID=gene3346;Name=Y_RS16800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16800
NC_004088.1	Protein Homology	CDS	3598119	3598415	.	-	0	ID=cds3253;Parent=gene3346;Dbxref=Genbank:WP_002214787.1;Name=WP_002214787.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214787.1;transl_table=11
NC_004088.1	RefSeq	gene	3598579	3598941	.	-	.	ID=gene3347;Name=Y_RS16805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16805;old_locus_tag=y3267
NC_004088.1	Protein Homology	CDS	3598579	3598941	.	-	0	ID=cds3254;Parent=gene3347;Dbxref=Genbank:WP_002209925.1;Name=WP_002209925.1;gbkey=CDS;product=2-hydroxyacid dehydrogenase;protein_id=WP_002209925.1;transl_table=11
NC_004088.1	RefSeq	gene	3599004	3599264	.	-	.	ID=gene3348;Name=Y_RS16810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16810
NC_004088.1	Protein Homology	CDS	3599004	3599264	.	-	0	ID=cds3255;Parent=gene3348;Dbxref=Genbank:WP_002214785.1;Name=WP_002214785.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214785.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3599223	3599478	.	+	.	ID=id394;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3599636	3599761	.	+	.	ID=gene3349;Name=Y_RS16815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16815;old_locus_tag=y3269
NC_004088.1	Protein Homology	CDS	3599636	3599761	.	+	0	ID=cds3256;Parent=gene3349;Dbxref=Genbank:WP_002214784.1;Name=WP_002214784.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214784.1;transl_table=11
NC_004088.1	RefSeq	gene	3599862	3600047	.	+	.	ID=gene3350;Name=Y_RS16820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16820
NC_004088.1	Protein Homology	CDS	3599862	3600047	.	+	0	ID=cds3257;Parent=gene3350;Dbxref=Genbank:WP_002209928.1;Name=WP_002209928.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209928.1;transl_table=11
NC_004088.1	RefSeq	gene	3600129	3601343	.	-	.	ID=gene3351;Name=Y_RS16825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16825;old_locus_tag=y3271
NC_004088.1	Protein Homology	CDS	3600129	3601343	.	-	0	ID=cds3258;Parent=gene3351;Dbxref=Genbank:WP_002209929.1;Name=WP_002209929.1;gbkey=CDS;product=integrase;protein_id=WP_002209929.1;transl_table=11
NC_004088.1	RefSeq	gene	3601509	3601582	.	-	.	ID=gene3352;Name=Y_RS16830;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS16830;old_locus_tag=yt067
NC_004088.1	tRNAscan-SE	tRNA	3601509	3601582	.	-	.	ID=rna87;Parent=gene3352;anticodon=(pos:complement(3601548..3601550));gbkey=tRNA;product=tRNA-Gly
NC_004088.1	tRNAscan-SE	exon	3601509	3601582	.	-	.	ID=id395;Parent=rna87;anticodon=(pos:complement(3601548..3601550));gbkey=tRNA;product=tRNA-Gly
NC_004088.1	RefSeq	gene	3601776	3603293	.	-	.	ID=gene3353;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=Y_RS16835;old_locus_tag=y3272
NC_004088.1	Protein Homology	CDS	3601776	3603293	.	-	0	ID=cds3259;Parent=gene3353;Dbxref=Genbank:WP_002209930.1;Name=WP_002209930.1;Note=class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1;gbkey=CDS;gene=lysS;product=lysine--tRNA ligase;protein_id=WP_002209930.1;transl_table=11
NC_004088.1	RefSeq	gene	3603303	3604235	.	-	.	ID=gene3354;Name=Y_RS16840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16840;old_locus_tag=y3273
NC_004088.1	Protein Homology	CDS	3603303	3604235	.	-	0	ID=cds3260;Parent=gene3354;Dbxref=Genbank:WP_002231350.1;Name=WP_002231350.1;Note=catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA;gbkey=CDS;product=peptide chain release factor 2;protein_id=WP_002231350.1;transl_table=11
NC_004088.1	RefSeq	gene	3604580	3606313	.	-	.	ID=gene3355;Name=Y_RS16845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16845;old_locus_tag=y3274
NC_004088.1	Protein Homology	CDS	3604580	3606313	.	-	0	ID=cds3261;Parent=gene3355;Dbxref=Genbank:WP_002209931.1;Name=WP_002209931.1;Note=5'-3' single-stranded-DNA-specific exonuclease;gbkey=CDS;product=ssDNA exonuclease RecJ;protein_id=WP_002209931.1;transl_table=11
NC_004088.1	RefSeq	gene	3606320	3607036	.	-	.	ID=gene3356;Name=Y_RS16850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16850;old_locus_tag=y3275
NC_004088.1	Protein Homology	CDS	3606320	3607036	.	-	0	ID=cds3262;Parent=gene3356;Dbxref=Genbank:WP_002209932.1;Name=WP_002209932.1;Note=DsbC%3B periplasmic protein with protein disulfide isomerase activity%3B this protein also shows disulfide oxidoreductase activity;gbkey=CDS;product=thiol:disulfide interchange protein DsbC;protein_id=WP_002209932.1;transl_table=11
NC_004088.1	RefSeq	gene	3607067	3607966	.	-	.	ID=gene3357;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=Y_RS16855;old_locus_tag=y3276
NC_004088.1	Protein Homology	CDS	3607067	3607966	.	-	0	ID=cds3263;Parent=gene3357;Dbxref=Genbank:WP_002209933.1;Name=WP_002209933.1;Note=site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B XerD specifically exchanges the bottom strands%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs;gbkey=CDS;gene=xerD;product=tyrosine recombinase XerD;protein_id=WP_002209933.1;transl_table=11
NC_004088.1	RefSeq	gene	3608073	3608591	.	+	.	ID=gene3358;Name=Y_RS16860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16860;old_locus_tag=y3277
NC_004088.1	Protein Homology	CDS	3608073	3608591	.	+	0	ID=cds3264;Parent=gene3358;Dbxref=Genbank:WP_002209934.1;Name=WP_002209934.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic;gbkey=CDS;product=flavodoxin;protein_id=WP_002209934.1;transl_table=11
NC_004088.1	RefSeq	gene	3608681	3610138	.	-	.	ID=gene3359;Name=Y_RS16865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16865;old_locus_tag=y3278
NC_004088.1	Protein Homology	CDS	3608681	3610138	.	-	0	ID=cds3265;Parent=gene3359;Dbxref=Genbank:WP_002220113.1;Name=WP_002220113.1;gbkey=CDS;product=membrane protein;protein_id=WP_002220113.1;transl_table=11
NC_004088.1	RefSeq	gene	3610259	3611677	.	-	.	ID=gene3360;Name=Y_RS16870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16870;old_locus_tag=y3279
NC_004088.1	Protein Homology	CDS	3610259	3611677	.	-	0	ID=cds3266;Parent=gene3360;Dbxref=Genbank:WP_002209936.1;Name=WP_002209936.1;Note=part of a two-component regulatory system with CreB or PhoB%3B involved in catabolic regulation;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_002209936.1;transl_table=11
NC_004088.1	RefSeq	gene	3611702	3612400	.	-	.	ID=gene3361;Name=Y_RS16875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16875;old_locus_tag=y3280
NC_004088.1	Protein Homology	CDS	3611702	3612400	.	-	0	ID=cds3267;Parent=gene3361;Dbxref=Genbank:WP_002209937.1;Name=WP_002209937.1;Note=response regulator in two-component regulatory system with CreC%3B CreB protein is phosphorylated by sensor protein phospho-CreC%3B involved in catabolic regulation;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002209937.1;transl_table=11
NC_004088.1	RefSeq	gene	3612400	3612825	.	-	.	ID=gene3362;Name=Y_RS16880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16880;old_locus_tag=y3281
NC_004088.1	Protein Homology	CDS	3612400	3612825	.	-	0	ID=cds3268;Parent=gene3362;Dbxref=Genbank:WP_002215144.1;Name=WP_002215144.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215144.1;transl_table=11
NC_004088.1	RefSeq	gene	3612806	3613072	.	-	.	ID=gene3363;Name=Y_RS16885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16885;old_locus_tag=y3282
NC_004088.1	Protein Homology	CDS	3612806	3613072	.	-	0	ID=cds3269;Parent=gene3363;Dbxref=Genbank:WP_002209939.1;Name=WP_002209939.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209939.1;transl_table=11
NC_004088.1	RefSeq	gene	3613389	3614381	.	+	.	ID=gene3364;Name=ygfZ;gbkey=Gene;gene=ygfZ;gene_biotype=protein_coding;locus_tag=Y_RS16890;old_locus_tag=y3283
NC_004088.1	Protein Homology	CDS	3613389	3614381	.	+	0	ID=cds3270;Parent=gene3364;Dbxref=Genbank:WP_002209940.1;Name=WP_002209940.1;Note=physiological role is not clear%3B not essential for growth but mutants grow poorly%3B mutations suppress hda null mutations%3B may be involved in regulation of ATP-DnaA levels%3B may also be involved in regulation of tRNA modifications%3B can bind folic acid and tetrahydrofolate%3B forms a three domain ring-like structure with a central channel%3B structurally similar to DMGO protein from A. globiformis%3B shows sequence similarity to yeast CAF17 transcriptional regulato%3B Hda supressor;gbkey=CDS;gene=ygfZ;product=tRNA-modifying protein YgfZ;protein_id=WP_002209940.1;transl_table=11
NC_004088.1	RefSeq	gene	3614454	3614951	.	-	.	ID=gene3365;Name=Y_RS16895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16895;old_locus_tag=y3284
NC_004088.1	Protein Homology	CDS	3614454	3614951	.	-	0	ID=cds3271;Parent=gene3365;Dbxref=Genbank:WP_002209941.1;Name=WP_002209941.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209941.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	3615070	3615088	.	-	.	ID=id396;Dbxref=CollecTF:EXPSITE_00000d50;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y3284;gbkey=protein_bind
NC_004088.1	RefSeq	gene	3615209	3615910	.	-	.	ID=gene3366;Name=Y_RS16900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16900;old_locus_tag=y3285
NC_004088.1	Protein Homology	CDS	3615209	3615910	.	-	0	ID=cds3272;Parent=gene3366;Dbxref=Genbank:WP_002209942.1;Name=WP_002209942.1;gbkey=CDS;product=hemolysin III;protein_id=WP_002209942.1;transl_table=11
NC_004088.1	RefSeq	gene	3616112	3617215	.	-	.	ID=gene3367;Name=Y_RS16905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16905;old_locus_tag=y3286
NC_004088.1	Protein Homology	CDS	3616112	3617215	.	-	0	ID=cds3273;Parent=gene3367;Dbxref=Genbank:WP_002209943.1;Name=WP_002209943.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209943.1;transl_table=11
NC_004088.1	RefSeq	gene	3617319	3619295	.	-	.	ID=gene3368;Name=Y_RS16910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16910;old_locus_tag=y3288
NC_004088.1	Protein Homology	CDS	3617319	3619295	.	-	0	ID=cds3274;Parent=gene3368;Dbxref=Genbank:WP_002215142.1;Name=WP_002215142.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215142.1;transl_table=11
NC_004088.1	RefSeq	gene	3619292	3619444	.	-	.	ID=gene3369;Name=Y_RS16915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16915;old_locus_tag=y3289
NC_004088.1	Protein Homology	CDS	3619292	3619444	.	-	0	ID=cds3275;Parent=gene3369;Dbxref=Genbank:WP_002209944.1;Name=WP_002209944.1;gbkey=CDS;product=hemagglutinin;protein_id=WP_002209944.1;transl_table=11
NC_004088.1	RefSeq	gene	3620505	3620942	.	-	.	ID=gene3370;Name=Y_RS16920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16920;old_locus_tag=y3291
NC_004088.1	Protein Homology	CDS	3620505	3620942	.	-	0	ID=cds3276;Parent=gene3370;Dbxref=Genbank:WP_002209946.1;Name=WP_002209946.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209946.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3621113	3621286	.	+	.	ID=id397;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3621320	3624199	.	-	.	ID=gene3371;Name=Y_RS16925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16925;old_locus_tag=y3292
NC_004088.1	Protein Homology	CDS	3621320	3624199	.	-	0	ID=cds3277;Parent=gene3371;Dbxref=Genbank:WP_002209947.1;Name=WP_002209947.1;Note=acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine;gbkey=CDS;product=glycine dehydrogenase (decarboxylating);protein_id=WP_002209947.1;transl_table=11
NC_004088.1	RefSeq	gene	3624411	3624797	.	-	.	ID=gene3372;Name=Y_RS16930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16930;old_locus_tag=y3293
NC_004088.1	Protein Homology	CDS	3624411	3624797	.	-	0	ID=cds3278;Parent=gene3372;Dbxref=Genbank:WP_002209948.1;Name=WP_002209948.1;Note=part of multienzyme complex composed of H%2C L%2C P%2C and T proteins which catalyzes oxidation of glycine to yield carbon dioxide%2C ammonia%2C 5%2C10-CH2-H4folate and a reduced pyridine nucleotide%3B protein H is involved in transfer of methylamine group from the P to T protein%3B covalently bound to a lipoyl cofactor;gbkey=CDS;product=glycine cleavage system protein H;protein_id=WP_002209948.1;transl_table=11
NC_004088.1	RefSeq	gene	3624866	3625963	.	-	.	ID=gene3373;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=Y_RS16935;old_locus_tag=y3294
NC_004088.1	Protein Homology	CDS	3624866	3625963	.	-	0	ID=cds3279;Parent=gene3373;Dbxref=Genbank:WP_002209949.1;Name=WP_002209949.1;Note=catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate%2C causing the release of ammonia and the generation of reduced GcvH protein;gbkey=CDS;gene=gcvT;product=aminomethyltransferase;protein_id=WP_002209949.1;transl_table=11
NC_004088.1	RefSeq	gene	3626660	3627880	.	-	.	ID=gene3374;Name=Y_RS16940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16940;old_locus_tag=y3295
NC_004088.1	Protein Homology	CDS	3626660	3627880	.	-	0	ID=cds3280;Parent=gene3374;Dbxref=Genbank:WP_002209950.1;Name=WP_002209950.1;gbkey=CDS;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_002209950.1;transl_table=11
NC_004088.1	RefSeq	gene	3628053	3629231	.	-	.	ID=gene3375;Name=Y_RS16945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16945;old_locus_tag=y3296
NC_004088.1	Protein Homology	CDS	3628053	3629231	.	-	0	ID=cds3281;Parent=gene3375;Dbxref=Genbank:WP_002209951.1;Name=WP_002209951.1;Note=Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone;gbkey=CDS;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_002209951.1;transl_table=11
NC_004088.1	RefSeq	gene	3629300	3630613	.	-	.	ID=gene3376;Name=Y_RS16950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16950;old_locus_tag=y3297
NC_004088.1	Protein Homology	CDS	3629300	3630613	.	-	0	ID=cds3282;Parent=gene3376;Dbxref=Genbank:WP_002209952.1;Name=WP_002209952.1;Note=exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue%3B substrate can be as short as a dipeptide;gbkey=CDS;product=proline aminopeptidase P II;protein_id=WP_002209952.1;transl_table=11
NC_004088.1	RefSeq	gene	3630701	3631279	.	-	.	ID=gene3377;Name=Y_RS16955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16955;old_locus_tag=y3298
NC_004088.1	Protein Homology	CDS	3630701	3631279	.	-	0	ID=cds3283;Parent=gene3377;Dbxref=Genbank:WP_002209953.1;Name=WP_002209953.1;Note=the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers%3B function unknown;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209953.1;transl_table=11
NC_004088.1	RefSeq	gene	3631616	3631945	.	+	.	ID=gene3378;Name=Y_RS16960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16960;old_locus_tag=y3299
NC_004088.1	Protein Homology	CDS	3631616	3631945	.	+	0	ID=cds3284;Parent=gene3378;Dbxref=Genbank:WP_002209954.1;Name=WP_002209954.1;gbkey=CDS;product=cell division protein ZapA;protein_id=WP_002209954.1;transl_table=11
NC_004088.1	RefSeq	gene	3632309	3632905	.	+	.	ID=gene3379;Name=Y_RS16965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16965;old_locus_tag=y3300
NC_004088.1	Protein Homology	CDS	3632309	3632905	.	+	0	ID=cds3285;Parent=gene3379;Dbxref=Genbank:WP_002209955.1;Name=WP_002209955.1;Note=ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms%3B unknown function;gbkey=CDS;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_002209955.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3632956	3633128	.	+	.	ID=id398;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3633170	3634411	.	-	.	ID=gene3380;Name=Y_RS16970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16970;old_locus_tag=y3301
NC_004088.1	Protein Homology	CDS	3633170	3634411	.	-	0	ID=cds3286;Parent=gene3380;Dbxref=Genbank:WP_002209956.1;Name=WP_002209956.1;Note=catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate;gbkey=CDS;product=D-3-phosphoglycerate dehydrogenase;protein_id=WP_002209956.1;transl_table=11
NC_004088.1	RefSeq	gene	3634718	3635374	.	-	.	ID=gene3381;Name=Y_RS16975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16975;old_locus_tag=y3302
NC_004088.1	Protein Homology	CDS	3634718	3635374	.	-	0	ID=cds3287;Parent=gene3381;Dbxref=Genbank:WP_002209957.1;Name=WP_002209957.1;Note=catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway;gbkey=CDS;product=ribose-5-phosphate isomerase A 1;protein_id=WP_002209957.1;transl_table=11
NC_004088.1	RefSeq	gene	3635716	3636624	.	+	.	ID=gene3382;Name=Y_RS16980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16980;old_locus_tag=y3303
NC_004088.1	Protein Homology	CDS	3635716	3636624	.	+	0	ID=cds3288;Parent=gene3382;Dbxref=Genbank:WP_002209958.1;Name=WP_002209958.1;Note=specific inhibitor of chromosomal initiation of replication in vitro%3B binds the three 13-mers in the origin (oriC) to block initiation of replication%3B also controls genes involved in arginine transport;gbkey=CDS;product=chromosome initiation inhibitor;protein_id=WP_002209958.1;transl_table=11
NC_004088.1	RefSeq	gene	3636635	3637414	.	-	.	ID=gene3383;Name=Y_RS16985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16985;old_locus_tag=y3304
NC_004088.1	Protein Homology	CDS	3636635	3637414	.	-	0	ID=cds3289;Parent=gene3383;Dbxref=Genbank:WP_002209959.1;Name=WP_002209959.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209959.1;transl_table=11
NC_004088.1	RefSeq	gene	3637604	3638221	.	-	.	ID=gene3384;Name=Y_RS16990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16990;old_locus_tag=y3305
NC_004088.1	Protein Homology	CDS	3637604	3638221	.	-	0	ID=cds3290;Parent=gene3384;Dbxref=Genbank:WP_002209960.1;Name=WP_002209960.1;Note=Involved in the export of arginine;gbkey=CDS;product=arginine exporter protein ArgO;protein_id=WP_002209960.1;transl_table=11
NC_004088.1	RefSeq	gene	3638484	3639353	.	-	.	ID=gene3385;Name=Y_RS16995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS16995;old_locus_tag=y3306
NC_004088.1	Protein Homology	CDS	3638484	3639353	.	-	0	ID=cds3291;Parent=gene3385;Dbxref=Genbank:WP_002209961.1;Name=WP_002209961.1;Note=participates in the regulation of osmotic pressure changes within the cel;gbkey=CDS;product=mechanosensitive ion channel protein MscS;protein_id=WP_002209961.1;transl_table=11
NC_004088.1	RefSeq	gene	3639469	3639759	.	+	.	ID=gene3386;Name=Y_RS17000;gbkey=Gene;gene_biotype=other;locus_tag=Y_RS17000
NC_004088.1	RefSeq	repeat_region	3639579	3639749	.	+	.	ID=id399;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3639791	3640870	.	-	.	ID=gene3387;Name=Y_RS17005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17005;old_locus_tag=y3307
NC_004088.1	Protein Homology	CDS	3639791	3640870	.	-	0	ID=cds3292;Parent=gene3387;Dbxref=Genbank:WP_002209962.1;Name=WP_002209962.1;Note=catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate;gbkey=CDS;product=fructose-bisphosphate aldolase;protein_id=WP_002209962.1;transl_table=11
NC_004088.1	RefSeq	gene	3640990	3642153	.	-	.	ID=gene3388;Name=Y_RS17010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17010;old_locus_tag=y3308
NC_004088.1	Protein Homology	CDS	3640990	3642153	.	-	0	ID=cds3293;Parent=gene3388;Dbxref=Genbank:WP_002209963.1;Name=WP_002209963.1;gbkey=CDS;product=phosphoglycerate kinase;protein_id=WP_002209963.1;transl_table=11
NC_004088.1	RefSeq	gene	3642256	3643272	.	-	.	ID=gene3389;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=Y_RS17015;old_locus_tag=y3309
NC_004088.1	Protein Homology	CDS	3642256	3643272	.	-	0	ID=cds3294;Parent=gene3389;Dbxref=Genbank:WP_002209964.1;Name=WP_002209964.1;Note=required for glycolysis%3B catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate;gbkey=CDS;gene=gapA;product=D-erythrose-4-phosphate dehydrogenase;protein_id=WP_002209964.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3643502	3644222	.	+	.	ID=id400;gbkey=repeat_region
NC_004088.1	RefSeq	region	3643507	3644215	.	-	.	ID=id401;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3643613	3644070	.	-	.	ID=gene3390;Name=Y_RS17020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS17020;pseudo=true
NC_004088.1	Protein Homology	CDS	3643613	3644070	.	-	0	ID=cds3295;Parent=gene3390;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3644378	3646372	.	-	.	ID=gene3391;Name=Y_RS17025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17025;old_locus_tag=y3310
NC_004088.1	Protein Homology	CDS	3644378	3646372	.	-	0	ID=cds3296;Parent=gene3391;Dbxref=Genbank:WP_002209965.1;Name=WP_002209965.1;Note=catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase;gbkey=CDS;product=transketolase;protein_id=WP_002209965.1;transl_table=11
NC_004088.1	RefSeq	gene	3646884	3647636	.	+	.	ID=gene3392;Name=Y_RS17030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17030;old_locus_tag=y3311
NC_004088.1	Protein Homology	CDS	3646884	3647636	.	+	0	ID=cds3297;Parent=gene3392;Dbxref=Genbank:WP_002209967.1;Name=WP_002209967.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002209967.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3647683	3647853	.	+	.	ID=id402;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3647926	3648246	.	-	.	ID=gene3393;Name=Y_RS17035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17035;old_locus_tag=y3312
NC_004088.1	Protein Homology	CDS	3647926	3648246	.	-	0	ID=cds3298;Parent=gene3393;Dbxref=Genbank:WP_002209968.1;Name=WP_002209968.1;gbkey=CDS;product=(2Fe-2S)-binding protein;protein_id=WP_002209968.1;transl_table=11
NC_004088.1	RefSeq	gene	3648406	3650385	.	-	.	ID=gene3394;Name=Y_RS17040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17040;old_locus_tag=y3313
NC_004088.1	Protein Homology	CDS	3648406	3650385	.	-	0	ID=cds3299;Parent=gene3394;Dbxref=Genbank:WP_002209969.1;Name=WP_002209969.1;Note=catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis;gbkey=CDS;product=biosynthetic arginine decarboxylase;protein_id=WP_002209969.1;transl_table=11
NC_004088.1	RefSeq	gene	3651592	3652746	.	+	.	ID=gene3395;Name=Y_RS17045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17045;old_locus_tag=y3314
NC_004088.1	Protein Homology	CDS	3651592	3652746	.	+	0	ID=cds3300;Parent=gene3395;Dbxref=Genbank:WP_002209971.1;Name=WP_002209971.1;Note=catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase;gbkey=CDS;product=S-adenosylmethionine synthase;protein_id=WP_002209971.1;transl_table=11
NC_004088.1	RefSeq	gene	3652939	3653451	.	+	.	ID=gene3396;Name=Y_RS17050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17050;old_locus_tag=y3315
NC_004088.1	Protein Homology	CDS	3652939	3653451	.	+	0	ID=cds3301;Parent=gene3396;Dbxref=Genbank:WP_002228653.1;Name=WP_002228653.1;gbkey=CDS;product=Zn-dependent metalloprotease;protein_id=WP_002228653.1;transl_table=11
NC_004088.1	RefSeq	gene	3653549	3654256	.	+	.	ID=gene3397;Name=Y_RS17055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17055;old_locus_tag=y3316
NC_004088.1	Protein Homology	CDS	3653549	3654256	.	+	0	ID=cds3302;Parent=gene3397;Dbxref=Genbank:WP_002209973.1;Name=WP_002209973.1;gbkey=CDS;product=endonuclease;protein_id=WP_002209973.1;transl_table=11
NC_004088.1	RefSeq	gene	3654517	3655248	.	+	.	ID=gene3398;Name=Y_RS17060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17060;old_locus_tag=y3320
NC_004088.1	Protein Homology	CDS	3654517	3655248	.	+	0	ID=cds3303;Parent=gene3398;Dbxref=Genbank:WP_002209975.1;Name=WP_002209975.1;gbkey=CDS;product=16S rRNA methyltransferase;protein_id=WP_002209975.1;transl_table=11
NC_004088.1	RefSeq	gene	3655274	3656233	.	+	.	ID=gene3399;Name=Y_RS17065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17065;old_locus_tag=y3321
NC_004088.1	Protein Homology	CDS	3655274	3656233	.	+	0	ID=cds3304;Parent=gene3399;Dbxref=Genbank:WP_002209976.1;Name=WP_002209976.1;Note=catalyzes the second step in the glutathione biosynthesis pathway%2C where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine %3D ADP + phosphate + glutathione;gbkey=CDS;product=glutathione synthetase;protein_id=WP_002209976.1;transl_table=11
NC_004088.1	RefSeq	gene	3656349	3656912	.	+	.	ID=gene3400;Name=Y_RS17070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17070;old_locus_tag=y3322
NC_004088.1	Protein Homology	CDS	3656349	3656912	.	+	0	ID=cds3305;Parent=gene3400;Dbxref=Genbank:WP_002209977.1;Name=WP_002209977.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209977.1;transl_table=11
NC_004088.1	RefSeq	gene	3656912	3657334	.	+	.	ID=gene3401;Name=Y_RS17075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17075;old_locus_tag=y3323
NC_004088.1	Protein Homology	CDS	3656912	3657334	.	+	0	ID=cds3306;Parent=gene3401;Dbxref=Genbank:WP_002209978.1;Name=WP_002209978.1;Note=similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function;gbkey=CDS;product=Holliday junction DNA helicase;protein_id=WP_002209978.1;transl_table=11
NC_004088.1	RefSeq	gene	3657514	3658398	.	+	.	ID=gene3402;Name=Y_RS17080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17080;old_locus_tag=y3324
NC_004088.1	Protein Homology	CDS	3657514	3658398	.	+	0	ID=cds3307;Parent=gene3402;Dbxref=Genbank:WP_002209979.1;Name=WP_002209979.1;gbkey=CDS;product=N-carbamoylputrescine amidase;protein_id=WP_002209979.1;transl_table=11
NC_004088.1	RefSeq	gene	3658402	3659517	.	+	.	ID=gene3403;Name=Y_RS17085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17085;old_locus_tag=y3325
NC_004088.1	Protein Homology	CDS	3658402	3659517	.	+	0	ID=cds3308;Parent=gene3403;Dbxref=Genbank:WP_002209980.1;Name=WP_002209980.1;Note=catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis;gbkey=CDS;product=agmatine deiminase;protein_id=WP_002209980.1;transl_table=11
NC_004088.1	RefSeq	gene	3659626	3660750	.	-	.	ID=gene3404;Name=Y_RS17090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17090;old_locus_tag=y3326
NC_004088.1	Protein Homology	CDS	3659626	3660750	.	-	0	ID=cds3309;Parent=gene3404;Dbxref=Genbank:WP_002209981.1;Name=WP_002209981.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209981.1;transl_table=11
NC_004088.1	RefSeq	gene	3660770	3661468	.	+	.	ID=gene3405;Name=Y_RS17095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17095;old_locus_tag=y3327
NC_004088.1	Protein Homology	CDS	3660770	3661468	.	+	0	ID=cds3310;Parent=gene3405;Dbxref=Genbank:WP_002215609.1;Name=WP_002215609.1;gbkey=CDS;product=YggS family pyridoxal phosphate enzyme;protein_id=WP_002215609.1;transl_table=11
NC_004088.1	RefSeq	gene	3661601	3662422	.	+	.	ID=gene3406;Name=Y_RS17100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17100;old_locus_tag=y3328
NC_004088.1	Protein Homology	CDS	3661601	3662422	.	+	0	ID=cds3311;Parent=gene3406;Dbxref=Genbank:WP_002209983.1;Name=WP_002209983.1;gbkey=CDS;product=pyrroline-5-carboxylate reductase;protein_id=WP_002209983.1;transl_table=11
NC_004088.1	RefSeq	gene	3662710	3663264	.	+	.	ID=gene3407;Name=Y_RS17105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17105;old_locus_tag=y3329
NC_004088.1	Protein Homology	CDS	3662710	3663264	.	+	0	ID=cds3312;Parent=gene3407;Dbxref=Genbank:WP_002209984.1;Name=WP_002209984.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209984.1;transl_table=11
NC_004088.1	RefSeq	gene	3663261	3663551	.	+	.	ID=gene3408;Name=Y_RS17110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17110;old_locus_tag=y3330
NC_004088.1	Protein Homology	CDS	3663261	3663551	.	+	0	ID=cds3313;Parent=gene3408;Dbxref=Genbank:WP_002215612.1;Name=WP_002215612.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215612.1;transl_table=11
NC_004088.1	RefSeq	gene	3663651	3664244	.	+	.	ID=gene3409;Name=Y_RS17115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17115;old_locus_tag=y3331
NC_004088.1	Protein Homology	CDS	3663651	3664244	.	+	0	ID=cds3314;Parent=gene3409;Dbxref=Genbank:WP_002215614.1;Name=WP_002215614.1;Note=HAM1-like protein%3B Rec-dependent growth%3B RgdB%3B yggV%3B it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine;gbkey=CDS;product=non-canonical purine NTP pyrophosphatase;protein_id=WP_002215614.1;transl_table=11
NC_004088.1	RefSeq	gene	3664237	3665367	.	+	.	ID=gene3410;Name=Y_RS17120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17120;old_locus_tag=y3332
NC_004088.1	Protein Homology	CDS	3664237	3665367	.	+	0	ID=cds3315;Parent=gene3410;Dbxref=Genbank:WP_002209987.1;Name=WP_002209987.1;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_002209987.1;transl_table=11
NC_004088.1	RefSeq	gene	3665557	3674889	.	-	.	ID=gene3411;Name=Y_RS17125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17125;old_locus_tag=y3333
NC_004088.1	Protein Homology	CDS	3665557	3674889	.	-	0	ID=cds3316;Parent=gene3411;Dbxref=Genbank:WP_002224905.1;Name=WP_002224905.1;gbkey=CDS;product=phage minor structural protein;protein_id=WP_002224905.1;transl_table=11
NC_004088.1	RefSeq	gene	3675388	3675618	.	-	.	ID=gene3412;Name=Y_RS17130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17130;old_locus_tag=y3334
NC_004088.1	Protein Homology	CDS	3675388	3675618	.	-	0	ID=cds3317;Parent=gene3412;Dbxref=Genbank:WP_002228655.1;Name=WP_002228655.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228655.1;transl_table=11
NC_004088.1	RefSeq	gene	3675591	3676121	.	-	.	ID=gene3413;Name=Y_RS17135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17135;old_locus_tag=y3335
NC_004088.1	Protein Homology	CDS	3675591	3676121	.	-	0	ID=cds3318;Parent=gene3413;Dbxref=Genbank:WP_002228656.1;Name=WP_002228656.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228656.1;transl_table=11
NC_004088.1	RefSeq	gene	3676233	3677159	.	-	.	ID=gene3414;Name=Y_RS17140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17140;old_locus_tag=y3336
NC_004088.1	Protein Homology	CDS	3676233	3677159	.	-	0	ID=cds3319;Parent=gene3414;Dbxref=Genbank:WP_002209989.1;Name=WP_002209989.1;Note=catalyzes the formation of glutamate from glutamine;gbkey=CDS;product=glutaminase;protein_id=WP_002209989.1;transl_table=11
NC_004088.1	RefSeq	gene	3677270	3677596	.	-	.	ID=gene3415;Name=Y_RS17145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17145;old_locus_tag=y3337
NC_004088.1	Protein Homology	CDS	3677270	3677596	.	-	0	ID=cds3320;Parent=gene3415;Dbxref=Genbank:WP_002209990.1;Name=WP_002209990.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209990.1;transl_table=11
NC_004088.1	RefSeq	gene	3677596	3678315	.	-	.	ID=gene3416;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;gene_synonym=yggH;locus_tag=Y_RS17150;old_locus_tag=y3338
NC_004088.1	Protein Homology	CDS	3677596	3678315	.	-	0	ID=cds3321;Parent=gene3416;Dbxref=Genbank:WP_002209991.1;Name=WP_002209991.1;Note=tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine;gbkey=CDS;gene=trmB;product=tRNA (guanine-N(7)-)-methyltransferase;protein_id=WP_002209991.1;transl_table=11
NC_004088.1	RefSeq	gene	3678653	3679768	.	+	.	ID=gene3417;Name=Y_RS17155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17155;old_locus_tag=y3339
NC_004088.1	Protein Homology	CDS	3678653	3679768	.	+	0	ID=cds3322;Parent=gene3417;Dbxref=Genbank:WP_002228057.1;Name=WP_002228057.1;gbkey=CDS;product=A/G-specific adenine glycosylase;protein_id=WP_002228057.1;transl_table=11
NC_004088.1	RefSeq	gene	3679946	3680218	.	+	.	ID=gene3418;Name=Y_RS17160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17160;old_locus_tag=y3340
NC_004088.1	Protein Homology	CDS	3679946	3680218	.	+	0	ID=cds3323;Parent=gene3418;Dbxref=Genbank:WP_002209994.1;Name=WP_002209994.1;Note=protects iron-sulfur proteins against oxidative damage;gbkey=CDS;product=Fe(2+)-trafficking protein;protein_id=WP_002209994.1;transl_table=11
NC_004088.1	RefSeq	gene	3680401	3681477	.	+	.	ID=gene3419;Name=mltC;gbkey=Gene;gene=mltC;gene_biotype=protein_coding;locus_tag=Y_RS17165;old_locus_tag=y3341
NC_004088.1	Protein Homology	CDS	3680401	3681477	.	+	0	ID=cds3324;Parent=gene3419;Dbxref=Genbank:WP_002209995.1;Name=WP_002209995.1;Note=Murein hydrolase C%3B membrane-bound%3B lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues;gbkey=CDS;gene=mltC;product=murein transglycosylase;protein_id=WP_002209995.1;transl_table=11
NC_004088.1	RefSeq	gene	3681777	3682877	.	+	.	ID=gene3420;Name=Y_RS17170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17170;old_locus_tag=y3342
NC_004088.1	Protein Homology	CDS	3681777	3682877	.	+	0	ID=cds3325;Parent=gene3420;Dbxref=Genbank:WP_002209997.1;Name=WP_002209997.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_002209997.1;transl_table=11
NC_004088.1	RefSeq	gene	3682981	3685014	.	+	.	ID=gene3421;Name=Y_RS17175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17175;old_locus_tag=y3343
NC_004088.1	Protein Homology	CDS	3682981	3685014	.	+	0	ID=cds3326;Parent=gene3421;Dbxref=Genbank:WP_002209998.1;Name=WP_002209998.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_002209998.1;transl_table=11
NC_004088.1	RefSeq	gene	3685097	3686032	.	-	.	ID=gene3422;Name=Y_RS17180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17180;old_locus_tag=y3344
NC_004088.1	Protein Homology	CDS	3685097	3686032	.	-	0	ID=cds3327;Parent=gene3422;Dbxref=Genbank:WP_002371953.1;Name=WP_002371953.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_002371953.1;transl_table=11
NC_004088.1	RefSeq	gene	3686113	3687612	.	-	.	ID=gene3423;Name=Y_RS17185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17185;old_locus_tag=y3345
NC_004088.1	Protein Homology	CDS	3686113	3687612	.	-	0	ID=cds3328;Parent=gene3423;Dbxref=Genbank:WP_002210000.1;Name=WP_002210000.1;gbkey=CDS;product=lantibiotic ABC transporter permease;protein_id=WP_002210000.1;transl_table=11
NC_004088.1	RefSeq	gene	3687658	3688617	.	-	.	ID=gene3424;Name=Y_RS17190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17190;old_locus_tag=y3346
NC_004088.1	Protein Homology	CDS	3687658	3688617	.	-	0	ID=cds3329;Parent=gene3424;Dbxref=Genbank:WP_002210001.1;Name=WP_002210001.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_002210001.1;transl_table=11
NC_004088.1	RefSeq	gene	3689173	3691335	.	-	.	ID=gene3425;Name=Y_RS17195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17195;old_locus_tag=y3347
NC_004088.1	Protein Homology	CDS	3689173	3691335	.	-	0	ID=cds3330;Parent=gene3425;Dbxref=Genbank:WP_002210002.1;Name=WP_002210002.1;gbkey=CDS;product=ornithine decarboxylase;protein_id=WP_002210002.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3691981	3692084	.	+	.	ID=id403;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3692004	3692079	.	+	.	ID=gene3426;Name=Y_RS17200;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS17200;old_locus_tag=yt068
NC_004088.1	tRNAscan-SE	tRNA	3692004	3692079	.	+	.	ID=rna88;Parent=gene3426;anticodon=(pos:3692037..3692039);gbkey=tRNA;product=tRNA-Phe
NC_004088.1	tRNAscan-SE	exon	3692004	3692079	.	+	.	ID=id404;Parent=rna88;anticodon=(pos:3692037..3692039);gbkey=tRNA;product=tRNA-Phe
NC_004088.1	RefSeq	gene	3692332	3692640	.	-	.	ID=gene3427;Name=Y_RS17205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17205
NC_004088.1	Protein Homology	CDS	3692332	3692640	.	-	0	ID=cds3331;Parent=gene3427;Dbxref=Genbank:WP_002228972.1;Name=WP_002228972.1;gbkey=CDS;product=integrase;protein_id=WP_002228972.1;transl_table=11
NC_004088.1	RefSeq	gene	3692664	3693299	.	-	.	ID=gene3428;Name=Y_RS17210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17210;old_locus_tag=y3349
NC_004088.1	Protein Homology	CDS	3692664	3693299	.	-	0	ID=cds3332;Parent=gene3428;Dbxref=Genbank:WP_002210005.1;Name=WP_002210005.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_002210005.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3692700	3693909	.	+	.	ID=id405;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3693907	3694275	.	-	.	ID=gene3429;Name=Y_RS17215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17215;old_locus_tag=y3350
NC_004088.1	Protein Homology	CDS	3693907	3694275	.	-	0	ID=cds3333;Parent=gene3429;Dbxref=Genbank:WP_002263919.1;Name=WP_002263919.1;gbkey=CDS;product=transposase;protein_id=WP_002263919.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3694031	3694665	.	+	.	ID=id406;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3694329	3694451	.	-	.	ID=gene3430;Name=Y_RS17220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17220
NC_004088.1	Protein Homology	CDS	3694329	3694451	.	-	0	ID=cds3334;Parent=gene3430;Dbxref=Genbank:WP_002210007.1;Name=WP_002210007.1;gbkey=CDS;product=transposase;protein_id=WP_002210007.1;transl_table=11
NC_004088.1	RefSeq	gene	3694700	3695467	.	-	.	ID=gene3431;Name=Y_RS17225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17225;old_locus_tag=y3352
NC_004088.1	Protein Homology	CDS	3694700	3695467	.	-	0	ID=cds3335;Parent=gene3431;Dbxref=Genbank:WP_002210008.1;Name=WP_002210008.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210008.1;transl_table=11
NC_004088.1	RefSeq	gene	3695454	3697751	.	-	.	ID=gene3432;Name=Y_RS17230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17230;old_locus_tag=y3353
NC_004088.1	Protein Homology	CDS	3695454	3697751	.	-	0	ID=cds3336;Parent=gene3432;Dbxref=Genbank:WP_002210009.1;Name=WP_002210009.1;gbkey=CDS;product=kinase;protein_id=WP_002210009.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3696285	3699012	.	+	.	ID=id407;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3697767	3698402	.	-	.	ID=gene3433;Name=Y_RS17235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17235;old_locus_tag=y3354
NC_004088.1	Protein Homology	CDS	3697767	3698402	.	-	0	ID=cds3337;Parent=gene3433;Dbxref=Genbank:WP_002210010.1;Name=WP_002210010.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_002210010.1;transl_table=11
NC_004088.1	RefSeq	gene	3698934	3699269	.	-	.	ID=gene3434;Name=Y_RS17240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17240;old_locus_tag=y3356
NC_004088.1	Protein Homology	CDS	3698934	3699269	.	-	0	ID=cds3338;Parent=gene3434;Dbxref=Genbank:WP_002216107.1;Name=WP_002216107.1;gbkey=CDS;product=transposase;protein_id=WP_002216107.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3699026	3699659	.	+	.	ID=id408;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3699323	3699598	.	-	.	ID=gene3435;Name=Y_RS17245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17245
NC_004088.1	Protein Homology	CDS	3699323	3699598	.	-	0	ID=cds3339;Parent=gene3435;Dbxref=Genbank:WP_002216108.1;Name=WP_002216108.1;gbkey=CDS;product=transposase;protein_id=WP_002216108.1;transl_table=11
NC_004088.1	RefSeq	gene	3699627	3699821	.	-	.	ID=gene3436;Name=Y_RS17250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17250
NC_004088.1	Protein Homology	CDS	3699627	3699821	.	-	0	ID=cds3340;Parent=gene3436;Dbxref=Genbank:WP_002216110.1;Name=WP_002216110.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216110.1;transl_table=11
NC_004088.1	RefSeq	gene	3700005	3700361	.	-	.	ID=gene3437;Name=Y_RS17255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17255;old_locus_tag=y3359
NC_004088.1	Protein Homology	CDS	3700005	3700361	.	-	0	ID=cds3341;Parent=gene3437;Dbxref=Genbank:WP_016257642.1;Name=WP_016257642.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016257642.1;transl_table=11
NC_004088.1	RefSeq	gene	3700505	3702727	.	-	.	ID=gene3438;Name=Y_RS17260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17260;old_locus_tag=y3360
NC_004088.1	Protein Homology	CDS	3700505	3702727	.	-	0	ID=cds3342;Parent=gene3438;Dbxref=Genbank:WP_002210011.1;Name=WP_002210011.1;gbkey=CDS;product=hydroxyethylthiazole kinase;protein_id=WP_002210011.1;transl_table=11
NC_004088.1	RefSeq	gene	3702742	3705090	.	-	.	ID=gene3439;Name=Y_RS17265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17265;old_locus_tag=y3361
NC_004088.1	Protein Homology	CDS	3702742	3705090	.	-	0	ID=cds3343;Parent=gene3439;Dbxref=Genbank:WP_002210012.1;Name=WP_002210012.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_002210012.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3702827	3703383	.	+	.	ID=id409;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3705087	3707735	.	-	.	ID=gene3440;Name=Y_RS17270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17270;old_locus_tag=y3362
NC_004088.1	Protein Homology	CDS	3705087	3707735	.	-	0	ID=cds3344;Parent=gene3440;Dbxref=Genbank:WP_002210013.1;Name=WP_002210013.1;gbkey=CDS;product=ATPase;protein_id=WP_002210013.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3706050	3707754	.	+	.	ID=id410;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	3708077	3714945	.	+	.	ID=id411;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3708153	3708644	.	-	.	ID=gene3441;Name=Y_RS17275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17275;old_locus_tag=y3363
NC_004088.1	Protein Homology	CDS	3708153	3708644	.	-	0	ID=cds3345;Parent=gene3441;Dbxref=Genbank:WP_002210014.1;Name=WP_002210014.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210014.1;transl_table=11
NC_004088.1	RefSeq	gene	3708648	3710384	.	-	.	ID=gene3442;Name=Y_RS17280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17280;old_locus_tag=y3365
NC_004088.1	Protein Homology	CDS	3708648	3710384	.	-	0	ID=cds3346;Parent=gene3442;Dbxref=Genbank:WP_002228049.1;Name=WP_002228049.1;gbkey=CDS;product=membrane protein;protein_id=WP_002228049.1;transl_table=11
NC_004088.1	RefSeq	gene	3710384	3711070	.	-	.	ID=gene3443;Name=Y_RS17285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17285;old_locus_tag=y3366
NC_004088.1	Protein Homology	CDS	3710384	3711070	.	-	0	ID=cds3347;Parent=gene3443;Dbxref=Genbank:WP_002210015.1;Name=WP_002210015.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210015.1;transl_table=11
NC_004088.1	RefSeq	gene	3711067	3712419	.	-	.	ID=gene3444;Name=Y_RS17290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17290;old_locus_tag=y3367
NC_004088.1	Protein Homology	CDS	3711067	3712419	.	-	0	ID=cds3348;Parent=gene3444;Dbxref=Genbank:WP_011055741.1;Name=WP_011055741.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011055741.1;transl_table=11
NC_004088.1	RefSeq	gene	3712431	3713975	.	-	.	ID=gene3445;Name=Y_RS17295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17295;old_locus_tag=y3368
NC_004088.1	Protein Homology	CDS	3712431	3713975	.	-	0	ID=cds3349;Parent=gene3445;Dbxref=Genbank:WP_002215896.1;Name=WP_002215896.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215896.1;transl_table=11
NC_004088.1	RefSeq	gene	3714018	3714518	.	-	.	ID=gene3446;Name=Y_RS17300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17300;old_locus_tag=y3369
NC_004088.1	Protein Homology	CDS	3714018	3714518	.	-	0	ID=cds3350;Parent=gene3446;Dbxref=Genbank:WP_002211662.1;Name=WP_002211662.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211662.1;transl_table=11
NC_004088.1	RefSeq	gene	3715720	3715875	.	-	.	ID=gene3447;Name=Y_RS17305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17305
NC_004088.1	Protein Homology	CDS	3715720	3715875	.	-	0	ID=cds3351;Parent=gene3447;Dbxref=Genbank:WP_002211661.1;Name=WP_002211661.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211661.1;transl_table=11
NC_004088.1	RefSeq	gene	3715918	3716289	.	-	.	ID=gene3448;Name=Y_RS17310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17310;old_locus_tag=y3370
NC_004088.1	Protein Homology	CDS	3715918	3716289	.	-	0	ID=cds3352;Parent=gene3448;Dbxref=Genbank:WP_002215898.1;Name=WP_002215898.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215898.1;transl_table=11
NC_004088.1	RefSeq	gene	3716463	3716726	.	-	.	ID=gene3449;Name=Y_RS17315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17315
NC_004088.1	Protein Homology	CDS	3716463	3716726	.	-	0	ID=cds3353;Parent=gene3449;Dbxref=Genbank:WP_002215899.1;Name=WP_002215899.1;gbkey=CDS;product=transposase;protein_id=WP_002215899.1;transl_table=11
NC_004088.1	RefSeq	gene	3716794	3717189	.	-	.	ID=gene3450;Name=Y_RS17320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17320;old_locus_tag=y3371
NC_004088.1	Protein Homology	CDS	3716794	3717189	.	-	0	ID=cds3354;Parent=gene3450;Dbxref=Genbank:WP_002215900.1;Name=WP_002215900.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002215900.1;transl_table=11
NC_004088.1	RefSeq	gene	3717640	3718290	.	-	.	ID=gene3451;Name=Y_RS17325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17325;old_locus_tag=y3373
NC_004088.1	Protein Homology	CDS	3717640	3718290	.	-	0	ID=cds3355;Parent=gene3451;Dbxref=Genbank:WP_002215902.1;Name=WP_002215902.1;gbkey=CDS;product=CAAX amino protease;protein_id=WP_002215902.1;transl_table=11
NC_004088.1	RefSeq	gene	3719465	3720115	.	+	.	ID=gene3452;Name=Y_RS17330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17330;old_locus_tag=y3374
NC_004088.1	Protein Homology	CDS	3719465	3720115	.	+	0	ID=cds3356;Parent=gene3452;Dbxref=Genbank:WP_002215903.1;Name=WP_002215903.1;gbkey=CDS;product=acyl-homoserine-lactone synthase;protein_id=WP_002215903.1;transl_table=11
NC_004088.1	RefSeq	gene	3720096	3720839	.	-	.	ID=gene3453;Name=Y_RS17335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17335;old_locus_tag=y3375
NC_004088.1	Protein Homology	CDS	3720096	3720839	.	-	0	ID=cds3357;Parent=gene3453;Dbxref=Genbank:WP_002211655.1;Name=WP_002211655.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_002211655.1;transl_table=11
NC_004088.1	RefSeq	gene	3721401	3722777	.	+	.	ID=gene3454;Name=Y_RS17340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17340;old_locus_tag=y3376
NC_004088.1	Protein Homology	CDS	3721401	3722777	.	+	0	ID=cds3358;Parent=gene3454;Dbxref=Genbank:WP_002211654.1;Name=WP_002211654.1;gbkey=CDS;product=peptidase;protein_id=WP_002211654.1;transl_table=11
NC_004088.1	RefSeq	gene	3723154	3723987	.	+	.	ID=gene3455;Name=Y_RS17345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17345;old_locus_tag=y3377
NC_004088.1	Protein Homology	CDS	3723154	3723987	.	+	0	ID=cds3359;Parent=gene3455;Dbxref=Genbank:WP_002211652.1;Name=WP_002211652.1;gbkey=CDS;product=dioxygenase;protein_id=WP_002211652.1;transl_table=11
NC_004088.1	RefSeq	gene	3724277	3725500	.	-	.	ID=gene3456;Name=Y_RS17350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17350;old_locus_tag=y3378
NC_004088.1	Protein Homology	CDS	3724277	3725500	.	-	0	ID=cds3360;Parent=gene3456;Dbxref=Genbank:WP_002211651.1;Name=WP_002211651.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002211651.1;transl_table=11
NC_004088.1	RefSeq	gene	3725640	3726248	.	+	.	ID=gene3457;Name=Y_RS17355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17355;old_locus_tag=y3380
NC_004088.1	Protein Homology	CDS	3725640	3726248	.	+	0	ID=cds3361;Parent=gene3457;Dbxref=Genbank:WP_002214005.1;Name=WP_002214005.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214005.1;transl_table=11
NC_004088.1	RefSeq	gene	3726341	3727411	.	+	.	ID=gene3458;Name=Y_RS17360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17360;old_locus_tag=y3381
NC_004088.1	Protein Homology	CDS	3726341	3727411	.	+	0	ID=cds3362;Parent=gene3458;Dbxref=Genbank:WP_002228662.1;Name=WP_002228662.1;gbkey=CDS;product=aerobactin siderophore biosynthesis proteiniucA;protein_id=WP_002228662.1;transl_table=11
NC_004088.1	RefSeq	gene	3727395	3728345	.	+	.	ID=gene3459;Name=Y_RS17365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17365;old_locus_tag=y3382
NC_004088.1	Protein Homology	CDS	3727395	3728345	.	+	0	ID=cds3363;Parent=gene3459;Dbxref=Genbank:WP_002211649.1;Name=WP_002211649.1;gbkey=CDS;product=N(6)-hydroxylysine O-acetyltransferase;protein_id=WP_002211649.1;transl_table=11
NC_004088.1	RefSeq	gene	3728342	3730090	.	+	.	ID=gene3460;Name=Y_RS17370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17370;old_locus_tag=y3383
NC_004088.1	Protein Homology	CDS	3728342	3730090	.	+	0	ID=cds3364;Parent=gene3460;Dbxref=Genbank:WP_002211648.1;Name=WP_002211648.1;gbkey=CDS;product=aerobactin synthase IucC;protein_id=WP_002211648.1;transl_table=11
NC_004088.1	RefSeq	gene	3730087	3731415	.	+	.	ID=gene3461;Name=Y_RS17375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17375;old_locus_tag=y3384
NC_004088.1	Protein Homology	CDS	3730087	3731415	.	+	0	ID=cds3365;Parent=gene3461;Dbxref=Genbank:WP_002211647.1;Name=WP_002211647.1;gbkey=CDS;product=lysine 6-monooxygenase;protein_id=WP_002211647.1;transl_table=11
NC_004088.1	RefSeq	gene	3731487	3733667	.	+	.	ID=gene3462;Name=Y_RS17380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17380;old_locus_tag=y3385
NC_004088.1	Protein Homology	CDS	3731487	3733667	.	+	0	ID=cds3366;Parent=gene3462;Dbxref=Genbank:WP_002211646.1;Name=WP_002211646.1;gbkey=CDS;product=ligand-gated channel protein;protein_id=WP_002211646.1;transl_table=11
NC_004088.1	RefSeq	gene	3733926	3735350	.	-	.	ID=gene3463;Name=Y_RS17385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17385;old_locus_tag=y3386
NC_004088.1	Protein Homology	CDS	3733926	3735350	.	-	0	ID=cds3367;Parent=gene3463;Dbxref=Genbank:WP_002211645.1;Name=WP_002211645.1;gbkey=CDS;product=sodium:galactoside symporter;protein_id=WP_002211645.1;transl_table=11
NC_004088.1	RefSeq	gene	3735514	3736137	.	+	.	ID=gene3464;Name=Y_RS17390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17390;old_locus_tag=y3387
NC_004088.1	Protein Homology	CDS	3735514	3736137	.	+	0	ID=cds3368;Parent=gene3464;Dbxref=Genbank:WP_042468771.1;Name=WP_042468771.1;gbkey=CDS;product=transposase;protein_id=WP_042468771.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3735567	3737009	.	+	.	ID=id412;gbkey=repeat_region
NC_004088.1	RefSeq	region	3735567	3737008	.	+	.	ID=id413;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3736191	3736976	.	+	.	ID=gene3465;Name=Y_RS17395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17395;old_locus_tag=y3388
NC_004088.1	Protein Homology	CDS	3736191	3736976	.	+	0	ID=cds3369;Parent=gene3465;Dbxref=Genbank:WP_002208932.1;Name=WP_002208932.1;gbkey=CDS;product=integrase;protein_id=WP_002208932.1;transl_table=11
NC_004088.1	RefSeq	gene	3737160	3739526	.	-	.	ID=gene3466;Name=Y_RS17400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17400;old_locus_tag=y3389
NC_004088.1	Protein Homology	CDS	3737160	3739526	.	-	0	ID=cds3370;Parent=gene3466;Dbxref=Genbank:WP_002214014.1;Name=WP_002214014.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_002214014.1;transl_table=11
NC_004088.1	RefSeq	gene	3739530	3739727	.	-	.	ID=gene3467;Name=Y_RS17405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17405
NC_004088.1	Protein Homology	CDS	3739530	3739727	.	-	0	ID=cds3371;Parent=gene3467;Dbxref=Genbank:WP_002214016.1;Name=WP_002214016.1;gbkey=CDS;product=membrane protein;protein_id=WP_002214016.1;transl_table=11
NC_004088.1	RefSeq	gene	3740166	3741443	.	+	.	ID=gene3468;Name=Y_RS17410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17410;old_locus_tag=y3392
NC_004088.1	Protein Homology	CDS	3740166	3741443	.	+	0	ID=cds3372;Parent=gene3468;Dbxref=Genbank:WP_002211643.1;Name=WP_002211643.1;gbkey=CDS;product=hemolysin secretion protein D;protein_id=WP_002211643.1;transl_table=11
NC_004088.1	RefSeq	gene	3741456	3744575	.	+	.	ID=gene3469;Name=Y_RS17415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17415;old_locus_tag=y3393
NC_004088.1	Protein Homology	CDS	3741456	3744575	.	+	0	ID=cds3373;Parent=gene3469;Dbxref=Genbank:WP_002211642.1;Name=WP_002211642.1;gbkey=CDS;product=multidrug RND transporter;protein_id=WP_002211642.1;transl_table=11
NC_004088.1	RefSeq	gene	3744710	3746200	.	-	.	ID=gene3470;Name=Y_RS17420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17420;old_locus_tag=y3394
NC_004088.1	Protein Homology	CDS	3744710	3746200	.	-	0	ID=cds3374;Parent=gene3470;Dbxref=Genbank:WP_002211641.1;Name=WP_002211641.1;gbkey=CDS;product=enterotoxin;protein_id=WP_002211641.1;transl_table=11
NC_004088.1	RefSeq	gene	3746478	3747065	.	+	.	ID=gene3471;Name=Y_RS17425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17425;old_locus_tag=y3395
NC_004088.1	Protein Homology	CDS	3746478	3747065	.	+	0	ID=cds3375;Parent=gene3471;Dbxref=Genbank:WP_002211640.1;Name=WP_002211640.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211640.1;transl_table=11
NC_004088.1	RefSeq	gene	3747903	3759020	.	+	.	ID=gene3472;Name=Y_RS17430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17430;old_locus_tag=y3396
NC_004088.1	Protein Homology	CDS	3747903	3759020	.	+	0	ID=cds3376;Parent=gene3472;Dbxref=Genbank:WP_002211638.1;Name=WP_002211638.1;gbkey=CDS;product=autotransporter;protein_id=WP_002211638.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3751134	3751462	.	+	.	ID=id414;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	3751792	3752420	.	+	.	ID=id415;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	3752941	3753326	.	+	.	ID=id416;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	3753651	3754106	.	+	.	ID=id417;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	3754750	3755135	.	+	.	ID=id418;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	3755440	3756068	.	+	.	ID=id419;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3759123	3761003	.	-	.	ID=gene3473;Name=Y_RS17435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17435;old_locus_tag=y3397
NC_004088.1	Protein Homology	CDS	3759123	3761003	.	-	0	ID=cds3377;Parent=gene3473;Dbxref=Genbank:WP_002211637.1;Name=WP_002211637.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211637.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3760871	3761095	.	+	.	ID=id420;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3761566	3762441	.	-	.	ID=gene3474;Name=Y_RS17440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17440;old_locus_tag=y3399
NC_004088.1	Protein Homology	CDS	3761566	3762441	.	-	0	ID=cds3378;Parent=gene3474;Dbxref=Genbank:WP_002214025.1;Name=WP_002214025.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214025.1;transl_table=11
NC_004088.1	RefSeq	gene	3762650	3764467	.	-	.	ID=gene3475;Name=Y_RS17445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17445;old_locus_tag=y3400
NC_004088.1	Protein Homology	CDS	3762650	3764467	.	-	0	ID=cds3379;Parent=gene3475;Dbxref=Genbank:WP_002211636.1;Name=WP_002211636.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211636.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3764335	3764559	.	+	.	ID=id421;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3765186	3766742	.	+	.	ID=gene3476;Name=Y_RS17450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17450;old_locus_tag=y3402
NC_004088.1	Protein Homology	CDS	3765186	3766742	.	+	0	ID=cds3380;Parent=gene3476;Dbxref=Genbank:WP_002211634.1;Name=WP_002211634.1;gbkey=CDS;product=aminobenzoyl-glutamate transporter;protein_id=WP_002211634.1;transl_table=11
NC_004088.1	RefSeq	gene	3766820	3768052	.	+	.	ID=gene3477;Name=Y_RS17455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17455;old_locus_tag=y3403
NC_004088.1	Protein Homology	CDS	3766820	3768052	.	+	0	ID=cds3381;Parent=gene3477;Dbxref=Genbank:WP_002211633.1;Name=WP_002211633.1;Note=catalyzes the release of the N-terminal amino acid from a tripeptide;gbkey=CDS;product=peptidase T;protein_id=WP_002211633.1;transl_table=11
NC_004088.1	RefSeq	gene	3768440	3770512	.	+	.	ID=gene3478;Name=Y_RS17460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17460;old_locus_tag=y3404
NC_004088.1	Protein Homology	CDS	3768440	3770512	.	+	0	ID=cds3382;Parent=gene3478;Dbxref=Genbank:WP_002223671.1;Name=WP_002223671.1;gbkey=CDS;product=ligand-gated channel;protein_id=WP_002223671.1;transl_table=11
NC_004088.1	RefSeq	gene	3770663	3774076	.	+	.	ID=gene3479;Name=Y_RS17465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17465;old_locus_tag=y3406
NC_004088.1	Protein Homology	CDS	3770663	3774076	.	+	0	ID=cds3383;Parent=gene3479;Dbxref=Genbank:WP_002211631.1;Name=WP_002211631.1;gbkey=CDS;product=peptide synthetase;protein_id=WP_002211631.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3774002	3775961	.	+	.	ID=id422;gbkey=repeat_region
NC_004088.1	RefSeq	region	3774004	3775957	.	+	.	ID=id423;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3774090	3775112	.	+	.	ID=gene3480;Name=Y_RS17470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17470;old_locus_tag=y3407
NC_004088.1	Protein Homology	CDS	3774090	3775112	.	+	0	ID=cds3384;Parent=gene3480;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	3775112	3775891	.	+	.	ID=gene3481;Name=Y_RS17475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17475;old_locus_tag=y3408
NC_004088.1	Protein Homology	CDS	3775112	3775891	.	+	0	ID=cds3385;Parent=gene3481;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	3776099	3782556	.	+	.	ID=gene3482;Name=Y_RS17480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS17480;old_locus_tag=y3410;pseudo=true
NC_004088.1	Protein Homology	CDS	3776099	3782556	.	+	0	ID=cds3386;Parent=gene3482;exception=annotated by transcript or proteomic data;gbkey=CDS;product=peptide synthetase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3782564	3784252	.	+	.	ID=gene3483;Name=Y_RS17485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17485;old_locus_tag=y3412
NC_004088.1	Protein Homology	CDS	3782564	3784252	.	+	0	ID=cds3387;Parent=gene3483;Dbxref=Genbank:WP_002214915.1;Name=WP_002214915.1;gbkey=CDS;product=high molecular weight siderophore biosynthesis protein;protein_id=WP_002214915.1;transl_table=11
NC_004088.1	RefSeq	gene	3784265	3790066	.	+	.	ID=gene3484;Name=Y_RS17490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17490
NC_004088.1	Protein Homology	CDS	3784265	3790066	.	+	0	ID=cds3388;Parent=gene3484;Dbxref=Genbank:WP_002231390.1;Name=WP_002231390.1;gbkey=CDS;product=non-ribosomal peptide synthetase;protein_id=WP_002231390.1;transl_table=11
NC_004088.1	RefSeq	gene	3790857	3791126	.	+	.	ID=gene3485;Name=Y_RS17495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17495
NC_004088.1	Protein Homology	CDS	3790857	3791126	.	+	0	ID=cds3389;Parent=gene3485;Dbxref=Genbank:WP_002231392.1;Name=WP_002231392.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002231392.1;transl_table=11
NC_004088.1	RefSeq	gene	3791123	3792250	.	+	.	ID=gene3486;Name=Y_RS17500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17500;old_locus_tag=y3419
NC_004088.1	Protein Homology	CDS	3791123	3792250	.	+	0	ID=cds3390;Parent=gene3486;Dbxref=Genbank:WP_002211390.1;Name=WP_002211390.1;gbkey=CDS;product=thiazolinyl imide reductase;protein_id=WP_002211390.1;transl_table=11
NC_004088.1	RefSeq	gene	3792243	3793007	.	+	.	ID=gene3487;Name=Y_RS17505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17505;old_locus_tag=y3420
NC_004088.1	Protein Homology	CDS	3792243	3793007	.	+	0	ID=cds3391;Parent=gene3487;Dbxref=Genbank:WP_002214925.1;Name=WP_002214925.1;gbkey=CDS;product=thioesterase;protein_id=WP_002214925.1;transl_table=11
NC_004088.1	RefSeq	gene	3792997	3794301	.	+	.	ID=gene3488;Name=Y_RS17510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17510;old_locus_tag=y3421
NC_004088.1	Protein Homology	CDS	3792997	3794301	.	+	0	ID=cds3392;Parent=gene3488;Dbxref=Genbank:WP_002211392.1;Name=WP_002211392.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002211392.1;transl_table=11
NC_004088.1	RefSeq	gene	3794301	3796073	.	+	.	ID=gene3489;Name=Y_RS17515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17515;old_locus_tag=y3422
NC_004088.1	Protein Homology	CDS	3794301	3796073	.	+	0	ID=cds3393;Parent=gene3489;Dbxref=Genbank:WP_002214927.1;Name=WP_002214927.1;gbkey=CDS;product=multidrug ABC transporter permease;protein_id=WP_002214927.1;transl_table=11
NC_004088.1	RefSeq	gene	3796066	3797823	.	+	.	ID=gene3490;Name=Y_RS17520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17520;old_locus_tag=y3423
NC_004088.1	Protein Homology	CDS	3796066	3797823	.	+	0	ID=cds3394;Parent=gene3490;Dbxref=Genbank:WP_002211394.1;Name=WP_002211394.1;gbkey=CDS;product=sulfate ABC transporter permease;protein_id=WP_002211394.1;transl_table=11
NC_004088.1	RefSeq	gene	3798146	3799021	.	-	.	ID=gene3491;Name=Y_RS17525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17525;old_locus_tag=y3424
NC_004088.1	Protein Homology	CDS	3798146	3799021	.	-	0	ID=cds3395;Parent=gene3491;Dbxref=Genbank:WP_002211395.1;Name=WP_002211395.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211395.1;transl_table=11
NC_004088.1	RefSeq	gene	3799457	3799855	.	-	.	ID=gene3492;Name=Y_RS17530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17530;old_locus_tag=y3425
NC_004088.1	Protein Homology	CDS	3799457	3799855	.	-	0	ID=cds3396;Parent=gene3492;Dbxref=Genbank:WP_002228079.1;Name=WP_002228079.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228079.1;transl_table=11
NC_004088.1	RefSeq	gene	3801394	3802737	.	+	.	ID=gene3493;Name=Y_RS17535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17535;old_locus_tag=y3426
NC_004088.1	Protein Homology	CDS	3801394	3802737	.	+	0	ID=cds3397;Parent=gene3493;Dbxref=Genbank:WP_002223676.1;Name=WP_002223676.1;gbkey=CDS;product=idonate transporter;protein_id=WP_002223676.1;transl_table=11
NC_004088.1	RefSeq	gene	3803738	3805396	.	+	.	ID=gene3494;Name=Y_RS17540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17540;old_locus_tag=y3427
NC_004088.1	Protein Homology	CDS	3803738	3805396	.	+	0	ID=cds3398;Parent=gene3494;Dbxref=Genbank:WP_002213742.1;Name=WP_002213742.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213742.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3805390	3807551	.	+	.	ID=id424;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3805501	3807501	.	+	.	ID=gene3495;Name=Y_RS17545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17545;old_locus_tag=y3428
NC_004088.1	Protein Homology	CDS	3805501	3807501	.	+	0	ID=cds3399;Parent=gene3495;Dbxref=Genbank:WP_011055753.1;Name=WP_011055753.1;gbkey=CDS;product=adhesin;protein_id=WP_011055753.1;transl_table=11
NC_004088.1	RefSeq	gene	3808157	3811927	.	+	.	ID=gene3496;Name=Y_RS17550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17550;old_locus_tag=y3429
NC_004088.1	Protein Homology	CDS	3808157	3811927	.	+	0	ID=cds3400;Parent=gene3496;Dbxref=Genbank:WP_002211399.1;Name=WP_002211399.1;gbkey=CDS;product=autotransporter;protein_id=WP_002211399.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3809816	3811977	.	+	.	ID=id425;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3812513	3814738	.	+	.	ID=gene3497;Name=Y_RS17555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17555;old_locus_tag=y3430
NC_004088.1	Protein Homology	CDS	3812513	3814738	.	+	0	ID=cds3401;Parent=gene3497;Dbxref=Genbank:WP_002211400.1;Name=WP_002211400.1;gbkey=CDS;product=type VI secretion protein Vgr;protein_id=WP_002211400.1;transl_table=11
NC_004088.1	RefSeq	gene	3814764	3816083	.	+	.	ID=gene3498;Name=Y_RS17560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17560;old_locus_tag=y3431
NC_004088.1	Protein Homology	CDS	3814764	3816083	.	+	0	ID=cds3402;Parent=gene3498;Dbxref=Genbank:WP_002211401.1;Name=WP_002211401.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211401.1;transl_table=11
NC_004088.1	RefSeq	gene	3816097	3820149	.	+	.	ID=gene3499;Name=Y_RS17565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17565;old_locus_tag=y3432
NC_004088.1	Protein Homology	CDS	3816097	3820149	.	+	0	ID=cds3403;Parent=gene3499;Dbxref=Genbank:WP_002223678.1;Name=WP_002223678.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_002223678.1;transl_table=11
NC_004088.1	RefSeq	gene	3820440	3820682	.	+	.	ID=gene3500;Name=Y_RS17570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17570;old_locus_tag=y3433
NC_004088.1	Protein Homology	CDS	3820440	3820682	.	+	0	ID=cds3404;Parent=gene3500;Dbxref=Genbank:WP_002211403.1;Name=WP_002211403.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211403.1;transl_table=11
NC_004088.1	RefSeq	gene	3821226	3821639	.	+	.	ID=gene3501;Name=Y_RS17575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17575;old_locus_tag=y3434
NC_004088.1	Protein Homology	CDS	3821226	3821639	.	+	0	ID=cds3405;Parent=gene3501;Dbxref=Genbank:WP_002211404.1;Name=WP_002211404.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211404.1;transl_table=11
NC_004088.1	RefSeq	gene	3821819	3823198	.	-	.	ID=gene3502;Name=Y_RS17580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17580;old_locus_tag=y3435
NC_004088.1	Protein Homology	CDS	3821819	3823198	.	-	0	ID=cds3406;Parent=gene3502;Dbxref=Genbank:WP_002223680.1;Name=WP_002223680.1;gbkey=CDS;product=transporter divalent anion:Na+ symporter (DASS) family;protein_id=WP_002223680.1;transl_table=11
NC_004088.1	RefSeq	gene	3823480	3824499	.	-	.	ID=gene3503;Name=Y_RS17585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17585;old_locus_tag=y3436
NC_004088.1	Protein Homology	CDS	3823480	3824499	.	-	0	ID=cds3407;Parent=gene3503;Dbxref=Genbank:WP_002211406.1;Name=WP_002211406.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002211406.1;transl_table=11
NC_004088.1	RefSeq	gene	3824793	3825957	.	+	.	ID=gene3504;Name=Y_RS17590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS17590;old_locus_tag=y3438;pseudo=true
NC_004088.1	Protein Homology	CDS	3824793	3825957	.	+	0	ID=cds3408;Parent=gene3504;exception=annotated by transcript or proteomic data;gbkey=CDS;product=1%2C4-beta-xylanase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	3825810	3827258	.	+	.	ID=id426;gbkey=repeat_region
NC_004088.1	RefSeq	region	3825816	3827258	.	-	.	ID=id427;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3826034	3826632	.	-	.	ID=gene3505;Name=Y_RS17595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS17595;pseudo=true
NC_004088.1	Protein Homology	CDS	3826034	3826632	.	-	0	ID=cds3409;Parent=gene3505;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3826686	3827201	.	-	.	ID=gene3506;Name=Y_RS17600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17600;old_locus_tag=y3440
NC_004088.1	Protein Homology	CDS	3826686	3827201	.	-	0	ID=cds3410;Parent=gene3506;Dbxref=Genbank:WP_002209258.1;Name=WP_002209258.1;gbkey=CDS;product=transposase;protein_id=WP_002209258.1;transl_table=11
NC_004088.1	RefSeq	gene	3827295	3828500	.	-	.	ID=gene3507;Name=Y_RS17605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17605;old_locus_tag=y3441
NC_004088.1	Protein Homology	CDS	3827295	3828500	.	-	0	ID=cds3411;Parent=gene3507;Dbxref=Genbank:WP_002223682.1;Name=WP_002223682.1;gbkey=CDS;product=flagellin;protein_id=WP_002223682.1;transl_table=11
NC_004088.1	RefSeq	gene	3829126	3830172	.	+	.	ID=gene3508;Name=Y_RS17610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17610;old_locus_tag=y3442
NC_004088.1	Protein Homology	CDS	3829126	3830172	.	+	0	ID=cds3412;Parent=gene3508;Dbxref=Genbank:WP_002211422.1;Name=WP_002211422.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211422.1;transl_table=11
NC_004088.1	RefSeq	gene	3830153	3830599	.	+	.	ID=gene3509;Name=Y_RS17615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17615;old_locus_tag=y3443
NC_004088.1	Protein Homology	CDS	3830153	3830599	.	+	0	ID=cds3413;Parent=gene3509;Dbxref=Genbank:WP_002211423.1;Name=WP_002211423.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211423.1;transl_table=11
NC_004088.1	RefSeq	gene	3830763	3831776	.	-	.	ID=gene3510;Name=Y_RS17620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17620;old_locus_tag=y3444
NC_004088.1	Protein Homology	CDS	3830763	3831776	.	-	0	ID=cds3414;Parent=gene3510;Dbxref=Genbank:WP_002211424.1;Name=WP_002211424.1;gbkey=CDS;product=flagellar hook associated protein lafW;protein_id=WP_002211424.1;transl_table=11
NC_004088.1	RefSeq	gene	3831788	3832711	.	-	.	ID=gene3511;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=Y_RS17625;old_locus_tag=y3445
NC_004088.1	Protein Homology	CDS	3831788	3832711	.	-	0	ID=cds3415;Parent=gene3511;Dbxref=Genbank:WP_002211425.1;Name=WP_002211425.1;Note=with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella;gbkey=CDS;gene=flgL;product=flagellar hook-associated protein FlgL;protein_id=WP_002211425.1;transl_table=11
NC_004088.1	RefSeq	gene	3832740	3834101	.	-	.	ID=gene3512;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=Y_RS17630;old_locus_tag=y3446
NC_004088.1	Protein Homology	CDS	3832740	3834101	.	-	0	ID=cds3416;Parent=gene3512;Dbxref=Genbank:WP_002211426.1;Name=WP_002211426.1;Note=with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook;gbkey=CDS;gene=flgK;product=flagellar hook protein FlgK;protein_id=WP_002211426.1;transl_table=11
NC_004088.1	RefSeq	gene	3834214	3834507	.	-	.	ID=gene3513;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=Y_RS17635;old_locus_tag=y3447
NC_004088.1	Protein Homology	CDS	3834214	3834507	.	-	0	ID=cds3417;Parent=gene3513;Dbxref=Genbank:WP_002211427.1;Name=WP_002211427.1;Note=FlgJ%3B flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space%3B like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain;gbkey=CDS;gene=flgJ;product=peptidoglycan hydrolase;protein_id=WP_002211427.1;transl_table=11
NC_004088.1	RefSeq	gene	3834517	3835659	.	-	.	ID=gene3514;Name=Y_RS17640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17640;old_locus_tag=y3448
NC_004088.1	Protein Homology	CDS	3834517	3835659	.	-	0	ID=cds3418;Parent=gene3514;Dbxref=Genbank:WP_042468851.1;Name=WP_042468851.1;gbkey=CDS;product=flagellar P-ring protein FlgI;protein_id=WP_042468851.1;transl_table=11
NC_004088.1	RefSeq	gene	3835706	3836371	.	-	.	ID=gene3515;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=Y_RS17645;old_locus_tag=y3449
NC_004088.1	Protein Homology	CDS	3835706	3836371	.	-	0	ID=cds3419;Parent=gene3515;Dbxref=Genbank:WP_002211429.1;Name=WP_002211429.1;Note=part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B the Yersinia have 2 copies of flgH;gbkey=CDS;gene=flgH;product=flagellar L-ring protein FlgH;protein_id=WP_002211429.1;transl_table=11
NC_004088.1	RefSeq	gene	3836406	3837191	.	-	.	ID=gene3516;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=Y_RS17650;old_locus_tag=y3450
NC_004088.1	Protein Homology	CDS	3836406	3837191	.	-	0	ID=cds3420;Parent=gene3516;Dbxref=Genbank:WP_002211430.1;Name=WP_002211430.1;Note=makes up the distal portion of the flagellar basal body rod%3B Bradyrhizobium has one thick flagellum and several thin flagella%3B the Bradyrhizobium protein in this cluster is associated with the thick flagella;gbkey=CDS;gene=flgG;product=flagellar basal body rod protein FlgG;protein_id=WP_002211430.1;transl_table=11
NC_004088.1	RefSeq	gene	3837259	3837990	.	-	.	ID=gene3517;Name=Y_RS17655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17655;old_locus_tag=y3451
NC_004088.1	Protein Homology	CDS	3837259	3837990	.	-	0	ID=cds3421;Parent=gene3517;Dbxref=Genbank:WP_002223685.1;Name=WP_002223685.1;gbkey=CDS;product=flagellar basal body rod protein FlgF;protein_id=WP_002223685.1;transl_table=11
NC_004088.1	RefSeq	gene	3837990	3839231	.	-	.	ID=gene3518;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=Y_RS17660;old_locus_tag=y3452
NC_004088.1	Protein Homology	CDS	3837990	3839231	.	-	0	ID=cds3422;Parent=gene3518;Dbxref=Genbank:WP_002211432.1;Name=WP_002211432.1;Note=the hook connects flagellar basal body to the flagellar filament%3B Vibrio parahaemolyticus protein is associated with the lateral flagella;gbkey=CDS;gene=flgE;product=flagellar hook protein FlgE;protein_id=WP_002211432.1;transl_table=11
NC_004088.1	RefSeq	gene	3839286	3839942	.	-	.	ID=gene3519;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=Y_RS17665;old_locus_tag=y3453
NC_004088.1	Protein Homology	CDS	3839286	3839942	.	-	0	ID=cds3423;Parent=gene3519;Dbxref=Genbank:WP_002211433.1;Name=WP_002211433.1;Note=acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B Vibrio parahaemolyticus protein in this cluster is associated with lateral flagella production;gbkey=CDS;gene=flgD;product=flagellar basal body rod modification protein FlgD;protein_id=WP_002211433.1;transl_table=11
NC_004088.1	RefSeq	gene	3839945	3840370	.	-	.	ID=gene3520;Name=Y_RS17670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17670;old_locus_tag=y3455
NC_004088.1	Protein Homology	CDS	3839945	3840370	.	-	0	ID=cds3424;Parent=gene3520;Dbxref=Genbank:WP_002211434.1;Name=WP_002211434.1;gbkey=CDS;product=flagellar basal body rod protein FlgC;protein_id=WP_002211434.1;transl_table=11
NC_004088.1	RefSeq	gene	3840373	3840819	.	-	.	ID=gene3521;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=Y_RS17675;old_locus_tag=y3456
NC_004088.1	Protein Homology	CDS	3840373	3840819	.	-	0	ID=cds3425;Parent=gene3521;Dbxref=Genbank:WP_002211435.1;Name=WP_002211435.1;Note=with FlgF and C makes up the proximal portion of the flagellar basal body rod%3B Yersinia has 2 copies of flgB and other flagellar genes;gbkey=CDS;gene=flgB;product=flagellar biosynthesis protein FlgB;protein_id=WP_002211435.1;transl_table=11
NC_004088.1	RefSeq	gene	3840877	3841725	.	+	.	ID=gene3522;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=Y_RS17680;old_locus_tag=y3457
NC_004088.1	Protein Homology	CDS	3840877	3841725	.	+	0	ID=cds3426;Parent=gene3522;Dbxref=Genbank:WP_002211436.1;Name=WP_002211436.1;Note=required for the assembly of the flagellar basal body P-ring%3B the Vibrio parahaemolyticus protein involved with the synthesis of the lateral flagella;gbkey=CDS;gene=flgA;product=flagellar basal body P-ring biosynthesis protein FlgA;protein_id=WP_002211436.1;transl_table=11
NC_004088.1	RefSeq	gene	3841954	3842220	.	+	.	ID=gene3523;Name=Y_RS17685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17685;old_locus_tag=y3458
NC_004088.1	Protein Homology	CDS	3841954	3842220	.	+	0	ID=cds3427;Parent=gene3523;Dbxref=Genbank:WP_002211437.1;Name=WP_002211437.1;gbkey=CDS;product=flagellar biosynthesis protein FlgM;protein_id=WP_002211437.1;transl_table=11
NC_004088.1	RefSeq	gene	3842227	3842652	.	+	.	ID=gene3524;Name=Y_RS17690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17690;old_locus_tag=y3459
NC_004088.1	Protein Homology	CDS	3842227	3842652	.	+	0	ID=cds3428;Parent=gene3524;Dbxref=Genbank:WP_002211438.1;Name=WP_002211438.1;gbkey=CDS;product=flagellar protein FlgN;protein_id=WP_002211438.1;transl_table=11
NC_004088.1	RefSeq	gene	3842980	3843417	.	-	.	ID=gene3525;Name=Y_RS17695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17695;old_locus_tag=y3460
NC_004088.1	Protein Homology	CDS	3842980	3843417	.	-	0	ID=cds3429;Parent=gene3525;Dbxref=Genbank:WP_002223686.1;Name=WP_002223686.1;gbkey=CDS;product=flagellar export protein FliJ;protein_id=WP_002223686.1;transl_table=11
NC_004088.1	RefSeq	gene	3843421	3844761	.	-	.	ID=gene3526;Name=Y_RS17700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17700;old_locus_tag=y3461
NC_004088.1	Protein Homology	CDS	3843421	3844761	.	-	0	ID=cds3430;Parent=gene3526;Dbxref=Genbank:WP_002211440.1;Name=WP_002211440.1;gbkey=CDS;product=flagellum-specific ATP synthase;protein_id=WP_002211440.1;transl_table=11
NC_004088.1	RefSeq	gene	3844754	3845470	.	-	.	ID=gene3527;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=Y_RS17705;old_locus_tag=y3462
NC_004088.1	Protein Homology	CDS	3844754	3845470	.	-	0	ID=cds3431;Parent=gene3527;Dbxref=Genbank:WP_002213763.1;Name=WP_002213763.1;Note=binds to and inhibits the function of flagella specific ATPase FliI;gbkey=CDS;gene=fliH;product=flagellar assembly protein FliH;protein_id=WP_002213763.1;transl_table=11
NC_004088.1	RefSeq	gene	3845475	3846518	.	-	.	ID=gene3528;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=Y_RS17710;old_locus_tag=y3463
NC_004088.1	Protein Homology	CDS	3845475	3846518	.	-	0	ID=cds3432;Parent=gene3528;Dbxref=Genbank:WP_002211442.1;Name=WP_002211442.1;Note=One of three proteins involved in switching the direction of the flagellar rotation;gbkey=CDS;gene=fliG;product=flagellar motor switch protein FliG;protein_id=WP_002211442.1;transl_table=11
NC_004088.1	RefSeq	gene	3846490	3848130	.	-	.	ID=gene3529;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=Y_RS17715;old_locus_tag=y3464
NC_004088.1	Protein Homology	CDS	3846490	3848130	.	-	0	ID=cds3433;Parent=gene3529;Dbxref=Genbank:WP_002211443.1;Name=WP_002211443.1;Note=the MS-ring anchors the flagellum to the cytoplasmic membrane%3B part of the flagellar basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B the Vibrio parahaemolyticus protein is associated with the lateral flagella;gbkey=CDS;gene=fliF;product=flagellar M-ring protein FliF;protein_id=WP_002211443.1;transl_table=11
NC_004088.1	RefSeq	gene	3848140	3848520	.	-	.	ID=gene3530;Name=Y_RS17720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17720;old_locus_tag=y3465
NC_004088.1	Protein Homology	CDS	3848140	3848520	.	-	0	ID=cds3434;Parent=gene3530;Dbxref=Genbank:WP_002211444.1;Name=WP_002211444.1;gbkey=CDS;product=flagellar hook-basal body protein FliE;protein_id=WP_002211444.1;transl_table=11
NC_004088.1	RefSeq	gene	3848537	3849565	.	-	.	ID=gene3531;Name=Y_RS17725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17725;old_locus_tag=y3466
NC_004088.1	Protein Homology	CDS	3848537	3849565	.	-	0	ID=cds3435;Parent=gene3531;Dbxref=Genbank:WP_002211445.1;Name=WP_002211445.1;gbkey=CDS;product=Fis family transcriptional regulator;protein_id=WP_002211445.1;transl_table=11
NC_004088.1	RefSeq	gene	3850088	3850987	.	+	.	ID=gene3532;Name=Y_RS17730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17730;old_locus_tag=y3467
NC_004088.1	Protein Homology	CDS	3850088	3850987	.	+	0	ID=cds3436;Parent=gene3532;Dbxref=Genbank:WP_002211446.1;Name=WP_002211446.1;gbkey=CDS;product=flagellar motor switch protein FliM;protein_id=WP_002211446.1;transl_table=11
NC_004088.1	RefSeq	gene	3850980	3851393	.	+	.	ID=gene3533;Name=Y_RS17735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17735;old_locus_tag=y3468
NC_004088.1	Protein Homology	CDS	3850980	3851393	.	+	0	ID=cds3437;Parent=gene3533;Dbxref=Genbank:WP_002211447.1;Name=WP_002211447.1;gbkey=CDS;product=flagellar motor switch protein FliN;protein_id=WP_002211447.1;transl_table=11
NC_004088.1	RefSeq	gene	3851390	3852160	.	+	.	ID=gene3534;Name=Y_RS17740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17740;old_locus_tag=y3469
NC_004088.1	Protein Homology	CDS	3851390	3852160	.	+	0	ID=cds3438;Parent=gene3534;Dbxref=Genbank:WP_002211448.1;Name=WP_002211448.1;gbkey=CDS;product=flagellar biosynthesis protein FliP;protein_id=WP_002211448.1;transl_table=11
NC_004088.1	RefSeq	gene	3852162	3852434	.	+	.	ID=gene3535;Name=Y_RS17745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17745;old_locus_tag=y3470
NC_004088.1	Protein Homology	CDS	3852162	3852434	.	+	0	ID=cds3439;Parent=gene3535;Dbxref=Genbank:WP_002211449.1;Name=WP_002211449.1;gbkey=CDS;product=flagellar biosynthesis protein FliQ;protein_id=WP_002211449.1;transl_table=11
NC_004088.1	RefSeq	gene	3852441	3853214	.	+	.	ID=gene3536;Name=Y_RS17750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17750;old_locus_tag=y3471
NC_004088.1	Protein Homology	CDS	3852441	3853214	.	+	0	ID=cds3440;Parent=gene3536;Dbxref=Genbank:WP_002213766.1;Name=WP_002213766.1;gbkey=CDS;product=flagellar biosynthesis protein FliR;protein_id=WP_002213766.1;transl_table=11
NC_004088.1	RefSeq	gene	3853214	3854347	.	+	.	ID=gene3537;Name=Y_RS17755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17755;old_locus_tag=y3472
NC_004088.1	Protein Homology	CDS	3853214	3854347	.	+	0	ID=cds3441;Parent=gene3537;Dbxref=Genbank:WP_002211451.1;Name=WP_002211451.1;gbkey=CDS;product=flagellar biosynthesis protein FlhB;protein_id=WP_002211451.1;transl_table=11
NC_004088.1	RefSeq	gene	3854334	3856431	.	+	.	ID=gene3538;Name=Y_RS17760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS17760;pseudo=true
NC_004088.1	Protein Homology	CDS	3854334	3856431	.	+	0	ID=cds3442;Parent=gene3538;exception=annotated by transcript or proteomic data;gbkey=CDS;product=flagellar biosynthesis protein FlhA;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3856661	3857230	.	+	.	ID=gene3539;Name=Y_RS17765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17765;old_locus_tag=y3475
NC_004088.1	Protein Homology	CDS	3856661	3857230	.	+	0	ID=cds3443;Parent=gene3539;Dbxref=Genbank:WP_002228082.1;Name=WP_002228082.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002228082.1;transl_table=11
NC_004088.1	RefSeq	gene	3857322	3858317	.	-	.	ID=gene3540;Name=Y_RS17770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17770;old_locus_tag=y3476
NC_004088.1	Protein Homology	CDS	3857322	3858317	.	-	0	ID=cds3444;Parent=gene3540;Dbxref=Genbank:WP_002211454.1;Name=WP_002211454.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211454.1;transl_table=11
NC_004088.1	RefSeq	gene	3859173	3860252	.	+	.	ID=gene3541;Name=Y_RS17775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17775;old_locus_tag=y3477
NC_004088.1	Protein Homology	CDS	3859173	3860252	.	+	0	ID=cds3445;Parent=gene3541;Dbxref=Genbank:WP_002211455.1;Name=WP_002211455.1;gbkey=CDS;product=iron ABC transporter substrate-binding protein;protein_id=WP_002211455.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3860280	3860417	.	+	.	ID=id428;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3860464	3861570	.	-	.	ID=gene3542;Name=Y_RS17780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17780;old_locus_tag=y3478
NC_004088.1	Protein Homology	CDS	3860464	3861570	.	-	0	ID=cds3446;Parent=gene3542;Dbxref=Genbank:WP_002211456.1;Name=WP_002211456.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002211456.1;transl_table=11
NC_004088.1	RefSeq	gene	3861595	3862314	.	-	.	ID=gene3543;Name=Y_RS17785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17785;old_locus_tag=y3479
NC_004088.1	Protein Homology	CDS	3861595	3862314	.	-	0	ID=cds3447;Parent=gene3543;Dbxref=Genbank:WP_002211457.1;Name=WP_002211457.1;gbkey=CDS;product=fimbrial chaperone protein;protein_id=WP_002211457.1;transl_table=11
NC_004088.1	RefSeq	gene	3862332	3864812	.	-	.	ID=gene3544;Name=Y_RS17790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17790;old_locus_tag=y3480
NC_004088.1	Protein Homology	CDS	3862332	3864812	.	-	0	ID=cds3448;Parent=gene3544;Dbxref=Genbank:WP_002211458.1;Name=WP_002211458.1;gbkey=CDS;product=outer membrane usher protein;protein_id=WP_002211458.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3865055	3865772	.	+	.	ID=id429;gbkey=repeat_region
NC_004088.1	RefSeq	region	3865059	3865768	.	-	.	ID=id430;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3865165	3865623	.	-	.	ID=gene3545;Name=Y_RS17795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17795;old_locus_tag=y3481
NC_004088.1	Protein Homology	CDS	3865165	3865623	.	-	0	ID=cds3449;Parent=gene3545;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	3865823	3866245	.	+	.	ID=gene3546;Name=Y_RS17800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17800;old_locus_tag=y3482
NC_004088.1	Protein Homology	CDS	3865823	3866245	.	+	0	ID=cds3450;Parent=gene3546;Dbxref=Genbank:WP_002211459.1;Name=WP_002211459.1;gbkey=CDS;product=tight adherance operon protein;protein_id=WP_002211459.1;transl_table=11
NC_004088.1	RefSeq	gene	3866297	3867163	.	+	.	ID=gene3547;Name=Y_RS17805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17805;old_locus_tag=y3483
NC_004088.1	Protein Homology	CDS	3866297	3867163	.	+	0	ID=cds3451;Parent=gene3547;Dbxref=Genbank:WP_002211460.1;Name=WP_002211460.1;gbkey=CDS;product=tight adherance operon protein;protein_id=WP_002211460.1;transl_table=11
NC_004088.1	RefSeq	gene	3867160	3868014	.	+	.	ID=gene3548;Name=Y_RS17810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17810;old_locus_tag=y3484
NC_004088.1	Protein Homology	CDS	3867160	3868014	.	+	0	ID=cds3452;Parent=gene3548;Dbxref=Genbank:WP_002213778.1;Name=WP_002213778.1;gbkey=CDS;product=pilus assembly protein CpaC;protein_id=WP_002213778.1;transl_table=11
NC_004088.1	RefSeq	gene	3868029	3868478	.	+	.	ID=gene3549;Name=Y_RS17815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17815;old_locus_tag=y3485
NC_004088.1	Protein Homology	CDS	3868029	3868478	.	+	0	ID=cds3453;Parent=gene3549;Dbxref=Genbank:WP_002228297.1;Name=WP_002228297.1;gbkey=CDS;product=secretion protein;protein_id=WP_002228297.1;transl_table=11
NC_004088.1	RefSeq	gene	3868475	3868765	.	+	.	ID=gene3550;Name=Y_RS17820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17820
NC_004088.1	Protein Homology	CDS	3868475	3868765	.	+	0	ID=cds3454;Parent=gene3550;Dbxref=Genbank:WP_002213782.1;Name=WP_002213782.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213782.1;transl_table=11
NC_004088.1	RefSeq	gene	3868776	3869903	.	+	.	ID=gene3551;Name=Y_RS17825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17825;old_locus_tag=y3486
NC_004088.1	Protein Homology	CDS	3868776	3869903	.	+	0	ID=cds3455;Parent=gene3551;Dbxref=Genbank:WP_002213784.1;Name=WP_002213784.1;gbkey=CDS;product=pilus assembly protein CpaE;protein_id=WP_002213784.1;transl_table=11
NC_004088.1	RefSeq	gene	3869915	3871201	.	+	.	ID=gene3552;Name=Y_RS17830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17830;old_locus_tag=y3487
NC_004088.1	Protein Homology	CDS	3869915	3871201	.	+	0	ID=cds3456;Parent=gene3552;Dbxref=Genbank:WP_002213785.1;Name=WP_002213785.1;gbkey=CDS;product=tight adherance operon protein;protein_id=WP_002213785.1;transl_table=11
NC_004088.1	RefSeq	gene	3871198	3872073	.	+	.	ID=gene3553;Name=Y_RS17835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17835;old_locus_tag=y3488
NC_004088.1	Protein Homology	CDS	3871198	3872073	.	+	0	ID=cds3457;Parent=gene3553;Dbxref=Genbank:WP_002212164.1;Name=WP_002212164.1;gbkey=CDS;product=tight adherance operon protein;protein_id=WP_002212164.1;transl_table=11
NC_004088.1	RefSeq	gene	3872070	3872903	.	+	.	ID=gene3554;Name=Y_RS17840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17840;old_locus_tag=y3489
NC_004088.1	Protein Homology	CDS	3872070	3872903	.	+	0	ID=cds3458;Parent=gene3554;Dbxref=Genbank:WP_002212165.1;Name=WP_002212165.1;gbkey=CDS;product=tight adherance operon protein;protein_id=WP_002212165.1;transl_table=11
NC_004088.1	RefSeq	gene	3872887	3873657	.	+	.	ID=gene3555;Name=Y_RS17845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17845;old_locus_tag=y3490
NC_004088.1	Protein Homology	CDS	3872887	3873657	.	+	0	ID=cds3459;Parent=gene3555;Dbxref=Genbank:WP_002212166.1;Name=WP_002212166.1;gbkey=CDS;product=tight adherance operon protein;protein_id=WP_002212166.1;transl_table=11
NC_004088.1	RefSeq	gene	3873654	3874127	.	+	.	ID=gene3556;Name=Y_RS17850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17850;old_locus_tag=y3491
NC_004088.1	Protein Homology	CDS	3873654	3874127	.	+	0	ID=cds3460;Parent=gene3556;Dbxref=Genbank:WP_002357277.1;Name=WP_002357277.1;gbkey=CDS;product=pilus biosynthesis protein TadE;protein_id=WP_002357277.1;transl_table=11
NC_004088.1	RefSeq	gene	3874111	3874683	.	+	.	ID=gene3557;Name=Y_RS17855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17855;old_locus_tag=y3492
NC_004088.1	Protein Homology	CDS	3874111	3874683	.	+	0	ID=cds3461;Parent=gene3557;Dbxref=Genbank:WP_002212168.1;Name=WP_002212168.1;gbkey=CDS;product=pseudopilin;protein_id=WP_002212168.1;transl_table=11
NC_004088.1	RefSeq	gene	3874708	3876264	.	+	.	ID=gene3558;Name=Y_RS17860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17860;old_locus_tag=y3493
NC_004088.1	Protein Homology	CDS	3874708	3876264	.	+	0	ID=cds3462;Parent=gene3558;Dbxref=Genbank:WP_002212169.1;Name=WP_002212169.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212169.1;transl_table=11
NC_004088.1	RefSeq	gene	3876361	3876792	.	-	.	ID=gene3559;Name=Y_RS17865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17865;old_locus_tag=y3494
NC_004088.1	Protein Homology	CDS	3876361	3876792	.	-	0	ID=cds3463;Parent=gene3559;Dbxref=Genbank:WP_002212170.1;Name=WP_002212170.1;Note=membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell;gbkey=CDS;product=biopolymer transporter ExbD;protein_id=WP_002212170.1;transl_table=11
NC_004088.1	RefSeq	gene	3876796	3877509	.	-	.	ID=gene3560;Name=Y_RS17870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17870
NC_004088.1	Protein Homology	CDS	3876796	3877509	.	-	0	ID=cds3464;Parent=gene3560;Dbxref=Genbank:WP_002353766.1;Name=WP_002353766.1;Note=membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell;gbkey=CDS;product=biopolymer transporter ExbB;protein_id=WP_002353766.1;transl_table=11
NC_004088.1	RefSeq	gene	3878312	3879523	.	+	.	ID=gene3561;Name=Y_RS17875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17875;old_locus_tag=y3496
NC_004088.1	Protein Homology	CDS	3878312	3879523	.	+	0	ID=cds3465;Parent=gene3561;Dbxref=Genbank:WP_002212172.1;Name=WP_002212172.1;Note=catalyzes the formation of L-homocysteine from cystathionine;gbkey=CDS;product=cystathionine beta-lyase;protein_id=WP_002212172.1;transl_table=11
NC_004088.1	RefSeq	gene	3879716	3880378	.	+	.	ID=gene3562;Name=Y_RS17880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17880;old_locus_tag=y3497
NC_004088.1	Protein Homology	CDS	3879716	3880378	.	+	0	ID=cds3466;Parent=gene3562;Dbxref=Genbank:WP_002212173.1;Name=WP_002212173.1;gbkey=CDS;product=membrane protein;protein_id=WP_002212173.1;transl_table=11
NC_004088.1	RefSeq	gene	3880470	3881363	.	-	.	ID=gene3563;Name=Y_RS17885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17885;old_locus_tag=y3498
NC_004088.1	Protein Homology	CDS	3880470	3881363	.	-	0	ID=cds3467;Parent=gene3563;Dbxref=Genbank:WP_002213786.1;Name=WP_002213786.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002213786.1;transl_table=11
NC_004088.1	RefSeq	gene	3881761	3882918	.	+	.	ID=gene3564;Name=Y_RS17890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17890;old_locus_tag=y3499
NC_004088.1	Protein Homology	CDS	3881761	3882918	.	+	0	ID=cds3468;Parent=gene3564;Dbxref=Genbank:WP_002212174.1;Name=WP_002212174.1;gbkey=CDS;product=aldehyde oxidoreductase;protein_id=WP_002212174.1;transl_table=11
NC_004088.1	RefSeq	gene	3882981	3883190	.	-	.	ID=gene3565;Name=Y_RS17895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17895;old_locus_tag=y3500
NC_004088.1	Protein Homology	CDS	3882981	3883190	.	-	0	ID=cds3469;Parent=gene3565;Dbxref=Genbank:WP_002216186.1;Name=WP_002216186.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216186.1;transl_table=11
NC_004088.1	RefSeq	gene	3883337	3884170	.	+	.	ID=gene3566;Name=dkgA;gbkey=Gene;gene=dkgA;gene_biotype=protein_coding;locus_tag=Y_RS17900;old_locus_tag=y3501
NC_004088.1	Protein Homology	CDS	3883337	3884170	.	+	0	ID=cds3470;Parent=gene3566;Dbxref=Genbank:WP_002212175.1;Name=WP_002212175.1;Note=methylglyoxal reductase/beta-keto ester reductase%3B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid%3B also catalyzes the reduction of methylglyoxal%2C ethyl-2-methylacetoacetate and ethyl-acetoacetate;gbkey=CDS;gene=dkgA;product=2%2C5-diketo-D-gluconic acid reductase A;protein_id=WP_002212175.1;transl_table=11
NC_004088.1	RefSeq	gene	3884192	3886536	.	-	.	ID=gene3567;Name=Y_RS17905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS17905;pseudo=true
NC_004088.1	Protein Homology	CDS	3884192	3886536	.	-	0	ID=cds3471;Parent=gene3567;exception=annotated by transcript or proteomic data;gbkey=CDS;product=YgiQ family radical SAM protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	3886844	3888268	.	-	.	ID=gene3568;Name=Y_RS17910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17910;old_locus_tag=y3504
NC_004088.1	Protein Homology	CDS	3886844	3888268	.	-	0	ID=cds3472;Parent=gene3568;Dbxref=Genbank:WP_002212176.1;Name=WP_002212176.1;Note=septal ring component that protects the divisome from stress;gbkey=CDS;product=cell division protein FtsP;protein_id=WP_002212176.1;transl_table=11
NC_004088.1	RefSeq	gene	3888447	3889178	.	-	.	ID=gene3569;Name=Y_RS17915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17915;old_locus_tag=y3506
NC_004088.1	Protein Homology	CDS	3888447	3889178	.	-	0	ID=cds3473;Parent=gene3569;Dbxref=Genbank:WP_002223690.1;Name=WP_002223690.1;gbkey=CDS;product=1-acyl-sn-glycerol-3-phosphate acyltransferase;protein_id=WP_002223690.1;transl_table=11
NC_004088.1	RefSeq	gene	3889467	3891740	.	-	.	ID=gene3570;Name=Y_RS17920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17920;old_locus_tag=y3507
NC_004088.1	Protein Homology	CDS	3889467	3891740	.	-	0	ID=cds3474;Parent=gene3570;Dbxref=Genbank:WP_002212178.1;Name=WP_002212178.1;Note=decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling;gbkey=CDS;product=DNA topoisomerase IV subunit A;protein_id=WP_002212178.1;transl_table=11
NC_004088.1	RefSeq	gene	3891723	3891971	.	+	.	ID=gene3571;Name=Y_RS17925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17925;old_locus_tag=y3508
NC_004088.1	Protein Homology	CDS	3891723	3891971	.	+	0	ID=cds3475;Parent=gene3571;Dbxref=Genbank:WP_002216196.1;Name=WP_002216196.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216196.1;transl_table=11
NC_004088.1	RefSeq	gene	3892044	3892628	.	+	.	ID=gene3572;Name=Y_RS17930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17930;old_locus_tag=y3509
NC_004088.1	Protein Homology	CDS	3892044	3892628	.	+	0	ID=cds3476;Parent=gene3572;Dbxref=Genbank:WP_002212179.1;Name=WP_002212179.1;Note=involved in drug resistance;gbkey=CDS;product=NADPH quinone reductase MdaB;protein_id=WP_002212179.1;transl_table=11
NC_004088.1	RefSeq	gene	3892686	3893597	.	-	.	ID=gene3573;Name=Y_RS17935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17935;old_locus_tag=y3510
NC_004088.1	Protein Homology	CDS	3892686	3893597	.	-	0	ID=cds3477;Parent=gene3573;Dbxref=Genbank:WP_002212180.1;Name=WP_002212180.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002212180.1;transl_table=11
NC_004088.1	RefSeq	gene	3893601	3895496	.	-	.	ID=gene3574;Name=Y_RS17940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17940;old_locus_tag=y3511
NC_004088.1	Protein Homology	CDS	3893601	3895496	.	-	0	ID=cds3478;Parent=gene3574;Dbxref=Genbank:WP_002212181.1;Name=WP_002212181.1;Note=decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling;gbkey=CDS;product=DNA topoisomerase IV subunit B;protein_id=WP_002212181.1;transl_table=11
NC_004088.1	RefSeq	gene	3895598	3896179	.	-	.	ID=gene3575;Name=Y_RS17945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17945;old_locus_tag=y3512
NC_004088.1	Protein Homology	CDS	3895598	3896179	.	-	0	ID=cds3479;Parent=gene3575;Dbxref=Genbank:WP_002212182.1;Name=WP_002212182.1;Note=Displays esterase activity toward palmitoyl-CoA and pNP-butyrate;gbkey=CDS;product=esterase;protein_id=WP_002212182.1;transl_table=11
NC_004088.1	RefSeq	gene	3896179	3897006	.	-	.	ID=gene3576;Name=Y_RS17950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17950;old_locus_tag=y3513
NC_004088.1	Protein Homology	CDS	3896179	3897006	.	-	0	ID=cds3480;Parent=gene3576;Dbxref=Genbank:WP_002217438.1;Name=WP_002217438.1;gbkey=CDS;product=3'%2C5'-cyclic-nucleotide phosphodiesterase;protein_id=WP_002217438.1;transl_table=11
NC_004088.1	RefSeq	gene	3897088	3897513	.	-	.	ID=gene3577;Name=Y_RS17955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17955;old_locus_tag=y3514
NC_004088.1	Protein Homology	CDS	3897088	3897513	.	-	0	ID=cds3481;Parent=gene3577;Dbxref=Genbank:WP_002212183.1;Name=WP_002212183.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_002212183.1;transl_table=11
NC_004088.1	RefSeq	gene	3897547	3898179	.	-	.	ID=gene3578;Name=nudF;gbkey=Gene;gene=nudF;gene_biotype=protein_coding;locus_tag=Y_RS17960;old_locus_tag=y3515
NC_004088.1	Protein Homology	CDS	3897547	3898179	.	-	0	ID=cds3482;Parent=gene3578;Dbxref=Genbank:WP_002212184.1;Name=WP_002212184.1;Note=ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose;gbkey=CDS;gene=nudF;product=ADP-ribose pyrophosphatase;protein_id=WP_002212184.1;transl_table=11
NC_004088.1	RefSeq	gene	3898575	3899972	.	+	.	ID=gene3579;Name=Y_RS17965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17965;old_locus_tag=y3516
NC_004088.1	Protein Homology	CDS	3898575	3899972	.	+	0	ID=cds3483;Parent=gene3579;Dbxref=Genbank:WP_002212186.1;Name=WP_002212186.1;gbkey=CDS;product=outer membrane channel protein;protein_id=WP_002212186.1;transl_table=11
NC_004088.1	RefSeq	gene	3900037	3900207	.	-	.	ID=gene3580;Name=Y_RS17970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17970
NC_004088.1	Protein Homology	CDS	3900037	3900207	.	-	0	ID=cds3484;Parent=gene3580;Dbxref=Genbank:WP_002223694.1;Name=WP_002223694.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002223694.1;transl_table=11
NC_004088.1	RefSeq	gene	3900276	3900959	.	+	.	ID=gene3581;Name=Y_RS17975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17975;old_locus_tag=y3517
NC_004088.1	Protein Homology	CDS	3900276	3900959	.	+	0	ID=cds3485;Parent=gene3581;Dbxref=Genbank:WP_002357252.1;Name=WP_002357252.1;gbkey=CDS;product=membrane protein;protein_id=WP_002357252.1;transl_table=11
NC_004088.1	RefSeq	gene	3900969	3902129	.	+	.	ID=gene3582;Name=Y_RS17980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17980;old_locus_tag=y3518
NC_004088.1	Protein Homology	CDS	3900969	3902129	.	+	0	ID=cds3486;Parent=gene3582;Dbxref=Genbank:WP_002212188.1;Name=WP_002212188.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212188.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3902165	3902535	.	+	.	ID=id431;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3902536	3903318	.	-	.	ID=gene3583;Name=Y_RS17985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17985;old_locus_tag=y3519
NC_004088.1	Protein Homology	CDS	3902536	3903318	.	-	0	ID=cds3487;Parent=gene3583;Dbxref=Genbank:WP_002212189.1;Name=WP_002212189.1;Note=seems to be involved in biofilm formation%3B in asymptomatic bacteriuria E. coli strains 83972 and VR50%2C the ygiD gene is upregulated during biofilm formation in urine;gbkey=CDS;product=LigB family dioxygenase;protein_id=WP_002212189.1;transl_table=11
NC_004088.1	RefSeq	gene	3903743	3904396	.	-	.	ID=gene3584;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=Y_RS17990;old_locus_tag=y3520
NC_004088.1	Protein Homology	CDS	3903743	3904396	.	-	0	ID=cds3488;Parent=gene3584;Dbxref=Genbank:WP_002212190.1;Name=WP_002212190.1;Note=DHBP synthase%3B functions during riboflavin biosynthesis;gbkey=CDS;gene=ribB;product=3%2C4-dihydroxy-2-butanone 4-phosphate synthase;protein_id=WP_002212190.1;transl_table=11
NC_004088.1	RefSeq	gene	3904585	3904929	.	+	.	ID=gene3585;Name=Y_RS17995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS17995
NC_004088.1	Protein Homology	CDS	3904585	3904929	.	+	0	ID=cds3489;Parent=gene3585;Dbxref=Genbank:WP_014465988.1;Name=WP_014465988.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014465988.1;transl_table=11
NC_004088.1	RefSeq	gene	3904965	3905246	.	+	.	ID=gene3586;Name=Y_RS18000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18000;old_locus_tag=y3522
NC_004088.1	Protein Homology	CDS	3904965	3905246	.	+	0	ID=cds3490;Parent=gene3586;Dbxref=Genbank:WP_002212191.1;Name=WP_002212191.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212191.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3905360	3905534	.	+	.	ID=id432;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3905571	3906821	.	-	.	ID=gene3587;Name=Y_RS18005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18005;old_locus_tag=y3523
NC_004088.1	Protein Homology	CDS	3905571	3906821	.	-	0	ID=cds3491;Parent=gene3587;Dbxref=Genbank:WP_002212192.1;Name=WP_002212192.1;Note=uncharacterized member of the APC superfamily of amino acid transporters%3B unknown function;gbkey=CDS;product=transporter;protein_id=WP_002212192.1;transl_table=11
NC_004088.1	RefSeq	gene	3906858	3908288	.	-	.	ID=gene3588;Name=Y_RS18010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18010;old_locus_tag=y3524
NC_004088.1	Protein Homology	CDS	3906858	3908288	.	-	0	ID=cds3492;Parent=gene3588;Dbxref=Genbank:WP_002212193.1;Name=WP_002212193.1;Note=catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D%2CD-heptose-1%2C7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D%2CD-heptose;gbkey=CDS;product=bifunctional protein HldE;protein_id=WP_002212193.1;transl_table=11
NC_004088.1	RefSeq	gene	3908423	3911278	.	-	.	ID=gene3589;Name=Y_RS18015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18015;old_locus_tag=y3525
NC_004088.1	Protein Homology	CDS	3908423	3911278	.	-	0	ID=cds3493;Parent=gene3589;Dbxref=Genbank:WP_002212194.1;Name=WP_002212194.1;Note=catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase%3B also catalyzes the reverse reaction - deadenylation%3B adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme;gbkey=CDS;product=glutamate--ammonia-ligase adenylyltransferase;protein_id=WP_002212194.1;transl_table=11
NC_004088.1	RefSeq	gene	3911587	3912756	.	-	.	ID=gene3590;Name=Y_RS18020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18020;old_locus_tag=y3527
NC_004088.1	Protein Homology	CDS	3911587	3912756	.	-	0	ID=cds3494;Parent=gene3590;Dbxref=Genbank:WP_002231433.1;Name=WP_002231433.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002231433.1;transl_table=11
NC_004088.1	RefSeq	gene	3913060	3913683	.	+	.	ID=gene3591;Name=Y_RS18025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18025;old_locus_tag=y3528
NC_004088.1	Protein Homology	CDS	3913060	3913683	.	+	0	ID=cds3495;Parent=gene3591;Dbxref=Genbank:WP_002212196.1;Name=WP_002212196.1;gbkey=CDS;product=signal transduction protein;protein_id=WP_002212196.1;transl_table=11
NC_004088.1	RefSeq	gene	3913843	3915081	.	+	.	ID=gene3592;Name=Y_RS18030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18030;old_locus_tag=y3529
NC_004088.1	Protein Homology	CDS	3913843	3915081	.	+	0	ID=cds3496;Parent=gene3592;Dbxref=Genbank:WP_002212197.1;Name=WP_002212197.1;gbkey=CDS;product=multifunctional CCA protein;protein_id=WP_002212197.1;transl_table=11
NC_004088.1	RefSeq	gene	3915317	3916135	.	-	.	ID=gene3593;Name=Y_RS18035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18035;old_locus_tag=y3530
NC_004088.1	Protein Homology	CDS	3915317	3916135	.	-	0	ID=cds3497;Parent=gene3593;Dbxref=Genbank:WP_002212198.1;Name=WP_002212198.1;Note=BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell;gbkey=CDS;product=undecaprenyl-diphosphatase;protein_id=WP_002212198.1;transl_table=11
NC_004088.1	RefSeq	gene	3916409	3916768	.	-	.	ID=gene3594;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=Y_RS18040;old_locus_tag=y3531
NC_004088.1	Protein Homology	CDS	3916409	3916768	.	-	0	ID=cds3498;Parent=gene3594;Dbxref=Genbank:WP_002212199.1;Name=WP_002212199.1;Note=catalyzes the conversion of 7%2C8-dihydroneopterin to 6-hydroxymethyl-7%2C8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin;gbkey=CDS;gene=folB;product=dihydroneopterin triphosphate 2'-epimerase;protein_id=WP_002212199.1;transl_table=11
NC_004088.1	RefSeq	gene	3916876	3917526	.	+	.	ID=gene3595;Name=Y_RS18045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18045;old_locus_tag=y3532
NC_004088.1	Protein Homology	CDS	3916876	3917526	.	+	0	ID=cds3499;Parent=gene3595;Dbxref=Genbank:WP_002217581.1;Name=WP_002217581.1;Note=involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsX;gbkey=CDS;product=glycerol-3-phosphate acyltransferase;protein_id=WP_002217581.1;transl_table=11
NC_004088.1	RefSeq	gene	3917772	3918785	.	-	.	ID=gene3596;Name=Y_RS18050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18050;old_locus_tag=y3534
NC_004088.1	Protein Homology	CDS	3917772	3918785	.	-	0	ID=cds3500;Parent=gene3596;Dbxref=Genbank:WP_002212201.1;Name=WP_002212201.1;Note=universal genome maintenance protein%3B Kae1/Qri7/OSGEP/YgjD family protein%3B in Archaea%2C some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex%3B kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32)%3B in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32%3B the protein is essential in Escherichia coli and Bacillus subtilis;gbkey=CDS;product=tRNA N6-adenosine threonylcarbamoyltransferase;protein_id=WP_002212201.1;transl_table=11
NC_004088.1	RefSeq	gene	3919191	3919406	.	+	.	ID=gene3597;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=Y_RS18055;old_locus_tag=y3535
NC_004088.1	Protein Homology	CDS	3919191	3919406	.	+	0	ID=cds3501;Parent=gene3597;Dbxref=Genbank:WP_001144069.1;Name=WP_001144069.1;Note=a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA;gbkey=CDS;gene=rpsU;product=30S ribosomal protein S21;protein_id=WP_001144069.1;transl_table=11
NC_004088.1	RefSeq	gene	3919542	3921290	.	+	.	ID=gene3598;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=Y_RS18060;old_locus_tag=y3536
NC_004088.1	Protein Homology	CDS	3919542	3921290	.	+	0	ID=cds3502;Parent=gene3598;Dbxref=Genbank:WP_002210358.1;Name=WP_002210358.1;Note=synthesizes RNA primers at the replication forks;gbkey=CDS;gene=dnaG;product=DNA primase;protein_id=WP_002210358.1;transl_table=11
NC_004088.1	RefSeq	gene	3921448	3923286	.	+	.	ID=gene3599;Name=Y_RS18065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18065;old_locus_tag=y3537
NC_004088.1	Protein Homology	CDS	3921448	3923286	.	+	0	ID=cds3503;Parent=gene3599;Dbxref=Genbank:WP_002210359.1;Name=WP_002210359.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this is the primary sigma factor of bacteria;gbkey=CDS;product=RNA polymerase sigma factor RpoD;protein_id=WP_002210359.1;transl_table=11
NC_004088.1	RefSeq	gene	3923482	3923558	.	+	.	ID=gene3600;Name=Y_RS18070;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS18070;old_locus_tag=yt069
NC_004088.1	tRNAscan-SE	tRNA	3923482	3923558	.	+	.	ID=rna89;Parent=gene3600;anticodon=(pos:3923516..3923518);gbkey=tRNA;product=tRNA-Met
NC_004088.1	tRNAscan-SE	exon	3923482	3923558	.	+	.	ID=id433;Parent=rna89;anticodon=(pos:3923516..3923518);gbkey=tRNA;product=tRNA-Met
NC_004088.1	RefSeq	gene	3923804	3924142	.	-	.	ID=gene3601;Name=Y_RS18075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18075;old_locus_tag=y3539
NC_004088.1	Protein Homology	CDS	3923804	3924142	.	-	0	ID=cds3504;Parent=gene3601;Dbxref=Genbank:WP_002217368.1;Name=WP_002217368.1;gbkey=CDS;product=terminase;protein_id=WP_002217368.1;transl_table=11
NC_004088.1	RefSeq	gene	3924120	3924410	.	-	.	ID=gene3602;Name=Y_RS18080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18080;old_locus_tag=y3540
NC_004088.1	Protein Homology	CDS	3924120	3924410	.	-	0	ID=cds3505;Parent=gene3602;Dbxref=Genbank:WP_002217366.1;Name=WP_002217366.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217366.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3924202	3924422	.	+	.	ID=id434;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3924427	3924882	.	-	.	ID=gene3603;Name=Y_RS18085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18085;old_locus_tag=y3541
NC_004088.1	Protein Homology	CDS	3924427	3924882	.	-	0	ID=cds3506;Parent=gene3603;Dbxref=Genbank:WP_002210360.1;Name=WP_002210360.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210360.1;transl_table=11
NC_004088.1	RefSeq	gene	3924909	3925379	.	-	.	ID=gene3604;Name=Y_RS18090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18090;old_locus_tag=y3542
NC_004088.1	Protein Homology	CDS	3924909	3925379	.	-	0	ID=cds3507;Parent=gene3604;Dbxref=Genbank:WP_002210361.1;Name=WP_002210361.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210361.1;transl_table=11
NC_004088.1	RefSeq	gene	3925388	3926770	.	-	.	ID=gene3605;Name=Y_RS18095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18095;old_locus_tag=y3543
NC_004088.1	Protein Homology	CDS	3925388	3926770	.	-	0	ID=cds3508;Parent=gene3605;Dbxref=Genbank:WP_002210362.1;Name=WP_002210362.1;gbkey=CDS;product=HNH endonuclease;protein_id=WP_002210362.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3926337	3926889	.	+	.	ID=id435;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3926903	3927133	.	-	.	ID=gene3606;Name=Y_RS18100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18100
NC_004088.1	Protein Homology	CDS	3926903	3927133	.	-	0	ID=cds3509;Parent=gene3606;Dbxref=Genbank:WP_002214241.1;Name=WP_002214241.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214241.1;transl_table=11
NC_004088.1	RefSeq	gene	3927291	3927491	.	+	.	ID=gene3607;Name=Y_RS18105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18105
NC_004088.1	Protein Homology	CDS	3927291	3927491	.	+	0	ID=cds3510;Parent=gene3607;Dbxref=Genbank:WP_002214239.1;Name=WP_002214239.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214239.1;transl_table=11
NC_004088.1	RefSeq	gene	3927689	3927847	.	+	.	ID=gene3608;Name=Y_RS18110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18110;old_locus_tag=y3544
NC_004088.1	Protein Homology	CDS	3927689	3927847	.	+	0	ID=cds3511;Parent=gene3608;Dbxref=Genbank:WP_002210363.1;Name=WP_002210363.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210363.1;transl_table=11
NC_004088.1	RefSeq	gene	3927844	3928056	.	-	.	ID=gene3609;Name=Y_RS18115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18115
NC_004088.1	Protein Homology	CDS	3927844	3928056	.	-	0	ID=cds3512;Parent=gene3609;Dbxref=Genbank:WP_002218980.1;Name=WP_002218980.1;gbkey=CDS;product=cell filamentation protein Fic;protein_id=WP_002218980.1;transl_table=11
NC_004088.1	RefSeq	gene	3928152	3928355	.	-	.	ID=gene3610;Name=Y_RS18120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18120
NC_004088.1	Protein Homology	CDS	3928152	3928355	.	-	0	ID=cds3513;Parent=gene3610;Dbxref=Genbank:WP_002210365.1;Name=WP_002210365.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210365.1;transl_table=11
NC_004088.1	RefSeq	gene	3928806	3929738	.	-	.	ID=gene3611;Name=Y_RS18125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18125;old_locus_tag=y3547
NC_004088.1	Protein Homology	CDS	3928806	3929738	.	-	0	ID=cds3514;Parent=gene3611;Dbxref=Genbank:WP_002210366.1;Name=WP_002210366.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_002210366.1;transl_table=11
NC_004088.1	RefSeq	gene	3929900	3930616	.	+	.	ID=gene3612;Name=Y_RS18130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18130;old_locus_tag=y3548
NC_004088.1	Protein Homology	CDS	3929900	3930616	.	+	0	ID=cds3515;Parent=gene3612;Dbxref=Genbank:WP_002210367.1;Name=WP_002210367.1;gbkey=CDS;product=protein-disulfide isomerase;protein_id=WP_002210367.1;transl_table=11
NC_004088.1	RefSeq	gene	3930876	3931178	.	+	.	ID=gene3613;Name=Y_RS18135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18135;old_locus_tag=y3549
NC_004088.1	Protein Homology	CDS	3930876	3931178	.	+	0	ID=cds3516;Parent=gene3613;Dbxref=Genbank:WP_002210368.1;Name=WP_002210368.1;gbkey=CDS;product=monooxygenase;protein_id=WP_002210368.1;transl_table=11
NC_004088.1	RefSeq	gene	3931393	3931797	.	-	.	ID=gene3614;Name=Y_RS18140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18140;old_locus_tag=y3550
NC_004088.1	Protein Homology	CDS	3931393	3931797	.	-	0	ID=cds3517;Parent=gene3614;Dbxref=Genbank:WP_002210369.1;Name=WP_002210369.1;gbkey=CDS;product=enamine deaminase RidA;protein_id=WP_002210369.1;transl_table=11
NC_004088.1	RefSeq	gene	3932082	3932462	.	-	.	ID=gene3615;Name=Y_RS18145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18145;old_locus_tag=y3551
NC_004088.1	Protein Homology	CDS	3932082	3932462	.	-	0	ID=cds3518;Parent=gene3615;Dbxref=Genbank:WP_002210370.1;Name=WP_002210370.1;gbkey=CDS;product=reactive intermediate/imine deaminase;protein_id=WP_002210370.1;transl_table=11
NC_004088.1	RefSeq	gene	3932478	3933104	.	-	.	ID=gene3616;Name=Y_RS18150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18150
NC_004088.1	Protein Homology	CDS	3932478	3933104	.	-	0	ID=cds3519;Parent=gene3616;Dbxref=Genbank:WP_002214230.1;Name=WP_002214230.1;gbkey=CDS;product=histidine kinase;protein_id=WP_002214230.1;transl_table=11
NC_004088.1	RefSeq	gene	3933238	3933675	.	-	.	ID=gene3617;Name=Y_RS18155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18155;old_locus_tag=y3553
NC_004088.1	Protein Homology	CDS	3933238	3933675	.	-	0	ID=cds3520;Parent=gene3617;Dbxref=Genbank:WP_002210371.1;Name=WP_002210371.1;gbkey=CDS;product=polyketide cyclase;protein_id=WP_002210371.1;transl_table=11
NC_004088.1	RefSeq	gene	3933688	3935139	.	-	.	ID=gene3618;Name=Y_RS18160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18160;old_locus_tag=y3554
NC_004088.1	Protein Homology	CDS	3933688	3935139	.	-	0	ID=cds3521;Parent=gene3618;Dbxref=Genbank:WP_002214229.1;Name=WP_002214229.1;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_002214229.1;transl_table=11
NC_004088.1	RefSeq	gene	3935132	3936364	.	-	.	ID=gene3619;Name=Y_RS18165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18165;old_locus_tag=y3555
NC_004088.1	Protein Homology	CDS	3935132	3936364	.	-	0	ID=cds3522;Parent=gene3619;Dbxref=Genbank:WP_002210373.1;Name=WP_002210373.1;gbkey=CDS;product=aminotransferase;protein_id=WP_002210373.1;transl_table=11
NC_004088.1	RefSeq	gene	3936850	3936957	.	+	.	ID=gene3620;Name=Y_RS18170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18170
NC_004088.1	Protein Homology	CDS	3936850	3936957	.	+	0	ID=cds3523;Parent=gene3620;Dbxref=Genbank:WP_002214227.1;Name=WP_002214227.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214227.1;transl_table=11
NC_004088.1	RefSeq	gene	3937130	3937330	.	+	.	ID=gene3621;Name=Y_RS18175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18175;old_locus_tag=y3556
NC_004088.1	Protein Homology	CDS	3937130	3937330	.	+	0	ID=cds3524;Parent=gene3621;Dbxref=Genbank:WP_002210374.1;Name=WP_002210374.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210374.1;transl_table=11
NC_004088.1	RefSeq	gene	3937327	3937662	.	+	.	ID=gene3622;Name=Y_RS18180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18180
NC_004088.1	Protein Homology	CDS	3937327	3937662	.	+	0	ID=cds3525;Parent=gene3622;Dbxref=Genbank:WP_002214224.1;Name=WP_002214224.1;gbkey=CDS;product=membrane protein;protein_id=WP_002214224.1;transl_table=11
NC_004088.1	RefSeq	gene	3937672	3938721	.	+	.	ID=gene3623;Name=Y_RS18185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18185;old_locus_tag=y3558
NC_004088.1	Protein Homology	CDS	3937672	3938721	.	+	0	ID=cds3526;Parent=gene3623;Dbxref=Genbank:WP_002210376.1;Name=WP_002210376.1;gbkey=CDS;product=multidrug resistance protein MdtN;protein_id=WP_002210376.1;transl_table=11
NC_004088.1	RefSeq	gene	3938705	3940606	.	+	.	ID=gene3624;Name=Y_RS18190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18190;old_locus_tag=y3559
NC_004088.1	Protein Homology	CDS	3938705	3940606	.	+	0	ID=cds3527;Parent=gene3624;Dbxref=Genbank:WP_002210377.1;Name=WP_002210377.1;gbkey=CDS;product=fusaric acid resistance protein;protein_id=WP_002210377.1;transl_table=11
NC_004088.1	RefSeq	gene	3940611	3942137	.	+	.	ID=gene3625;Name=Y_RS18195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18195;old_locus_tag=y3560
NC_004088.1	Protein Homology	CDS	3940611	3942137	.	+	0	ID=cds3528;Parent=gene3625;Dbxref=Genbank:WP_002214220.1;Name=WP_002214220.1;gbkey=CDS;product=transporter;protein_id=WP_002214220.1;transl_table=11
NC_004088.1	RefSeq	gene	3942201	3944384	.	-	.	ID=gene3626;Name=Y_RS18200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18200;old_locus_tag=y3562
NC_004088.1	Protein Homology	CDS	3942201	3944384	.	-	0	ID=cds3529;Parent=gene3626;Dbxref=Genbank:WP_002210379.1;Name=WP_002210379.1;gbkey=CDS;product=glycosyl hydrolase;protein_id=WP_002210379.1;transl_table=11
NC_004088.1	RefSeq	gene	3944435	3944950	.	-	.	ID=gene3627;Name=Y_RS18205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18205;old_locus_tag=y3563
NC_004088.1	Protein Homology	CDS	3944435	3944950	.	-	0	ID=cds3530;Parent=gene3627;Dbxref=Genbank:WP_002210380.1;Name=WP_002210380.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210380.1;transl_table=11
NC_004088.1	RefSeq	gene	3944947	3945765	.	-	.	ID=gene3628;Name=Y_RS18210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18210;old_locus_tag=y3564
NC_004088.1	Protein Homology	CDS	3944947	3945765	.	-	0	ID=cds3531;Parent=gene3628;Dbxref=Genbank:WP_002210381.1;Name=WP_002210381.1;gbkey=CDS;product=permease;protein_id=WP_002210381.1;transl_table=11
NC_004088.1	RefSeq	gene	3945765	3946646	.	-	.	ID=gene3629;Name=Y_RS18215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18215;old_locus_tag=y3565
NC_004088.1	Protein Homology	CDS	3945765	3946646	.	-	0	ID=cds3532;Parent=gene3629;Dbxref=Genbank:WP_002210382.1;Name=WP_002210382.1;gbkey=CDS;product=permease;protein_id=WP_002210382.1;transl_table=11
NC_004088.1	RefSeq	gene	3946700	3947944	.	-	.	ID=gene3630;Name=Y_RS18220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18220;old_locus_tag=y3566
NC_004088.1	Protein Homology	CDS	3946700	3947944	.	-	0	ID=cds3533;Parent=gene3630;Dbxref=Genbank:WP_002214214.1;Name=WP_002214214.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_002214214.1;transl_table=11
NC_004088.1	RefSeq	gene	3948021	3949007	.	-	.	ID=gene3631;Name=Y_RS18225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18225;old_locus_tag=y3567
NC_004088.1	Protein Homology	CDS	3948021	3949007	.	-	0	ID=cds3534;Parent=gene3631;Dbxref=Genbank:WP_002210384.1;Name=WP_002210384.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002210384.1;transl_table=11
NC_004088.1	RefSeq	gene	3949116	3952469	.	-	.	ID=gene3632;Name=Y_RS18230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18230;old_locus_tag=y3568
NC_004088.1	Protein Homology	CDS	3949116	3952469	.	-	0	ID=cds3535;Parent=gene3632;Dbxref=Genbank:WP_002214212.1;Name=WP_002214212.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214212.1;transl_table=11
NC_004088.1	RefSeq	gene	3952552	3953667	.	-	.	ID=gene3633;Name=Y_RS18235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18235;old_locus_tag=y3569
NC_004088.1	Protein Homology	CDS	3952552	3953667	.	-	0	ID=cds3536;Parent=gene3633;Dbxref=Genbank:WP_002353714.1;Name=WP_002353714.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_002353714.1;transl_table=11
NC_004088.1	RefSeq	gene	3953993	3955372	.	+	.	ID=gene3634;Name=Y_RS18240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18240;old_locus_tag=y3570
NC_004088.1	Protein Homology	CDS	3953993	3955372	.	+	0	ID=cds3537;Parent=gene3634;Dbxref=Genbank:WP_002210387.1;Name=WP_002210387.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210387.1;transl_table=11
NC_004088.1	RefSeq	gene	3955474	3956469	.	+	.	ID=gene3635;Name=Y_RS18245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS18245;pseudo=true
NC_004088.1	Protein Homology	CDS	3955474	3956469	.	+	0	ID=cds3538;Parent=gene3635;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:3955918..3955920%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	3956529	3958814	.	+	.	ID=gene3636;Name=Y_RS18250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18250;old_locus_tag=y3573
NC_004088.1	Protein Homology	CDS	3956529	3958814	.	+	0	ID=cds3539;Parent=gene3636;Dbxref=Genbank:WP_002210389.1;Name=WP_002210389.1;gbkey=CDS;product=autotransporter;protein_id=WP_002210389.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3959133	3959276	.	+	.	ID=id436;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3959310	3960065	.	-	.	ID=gene3637;Name=Y_RS18255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18255;old_locus_tag=y3575
NC_004088.1	Protein Homology	CDS	3959310	3960065	.	-	0	ID=cds3540;Parent=gene3637;Dbxref=Genbank:WP_002214952.1;Name=WP_002214952.1;gbkey=CDS;product=hemagglutinin;protein_id=WP_002214952.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3959313	3960060	.	+	.	ID=id437;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3960098	3960529	.	-	.	ID=gene3638;Name=Y_RS18260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18260;old_locus_tag=y3576
NC_004088.1	Protein Homology	CDS	3960098	3960529	.	-	0	ID=cds3541;Parent=gene3638;Dbxref=Genbank:WP_002228093.1;Name=WP_002228093.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228093.1;transl_table=11
NC_004088.1	RefSeq	gene	3960610	3960837	.	-	.	ID=gene3639;Name=Y_RS18265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18265;old_locus_tag=y3577
NC_004088.1	Protein Homology	CDS	3960610	3960837	.	-	0	ID=cds3542;Parent=gene3639;Dbxref=Genbank:WP_002214949.1;Name=WP_002214949.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214949.1;transl_table=11
NC_004088.1	RefSeq	gene	3960892	3961041	.	-	.	ID=gene3640;Name=Y_RS18270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18270;old_locus_tag=y3578
NC_004088.1	Protein Homology	CDS	3960892	3961041	.	-	0	ID=cds3543;Parent=gene3640;Dbxref=Genbank:WP_002214947.1;Name=WP_002214947.1;gbkey=CDS;product=adhesin;protein_id=WP_002214947.1;transl_table=11
NC_004088.1	RefSeq	gene	3961103	3961336	.	-	.	ID=gene3641;Name=Y_RS18275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18275
NC_004088.1	Protein Homology	CDS	3961103	3961336	.	-	0	ID=cds3544;Parent=gene3641;Dbxref=Genbank:WP_002214946.1;Name=WP_002214946.1;gbkey=CDS;product=immunity protein CdiI;protein_id=WP_002214946.1;transl_table=11
NC_004088.1	RefSeq	gene	3961333	3971220	.	-	.	ID=gene3642;Name=Y_RS18280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18280;old_locus_tag=y3579
NC_004088.1	Protein Homology	CDS	3961333	3971220	.	-	0	ID=cds3545;Parent=gene3642;Dbxref=Genbank:WP_002214945.1;Name=WP_002214945.1;gbkey=CDS;product=toxin CdiA;protein_id=WP_002214945.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3964600	3964743	.	+	.	ID=id438;gbkey=repeat_region
NC_004088.1	RefSeq	repeat_region	3965371	3966118	.	+	.	ID=id439;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3971265	3972953	.	-	.	ID=gene3643;Name=Y_RS18285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18285;old_locus_tag=y3580
NC_004088.1	Protein Homology	CDS	3971265	3972953	.	-	0	ID=cds3546;Parent=gene3643;Dbxref=Genbank:WP_002210394.1;Name=WP_002210394.1;gbkey=CDS;product=outer membrane transporter CdiB;protein_id=WP_002210394.1;transl_table=11
NC_004088.1	RefSeq	gene	3973668	3974306	.	+	.	ID=gene3644;Name=Y_RS18290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18290;old_locus_tag=y3581
NC_004088.1	Protein Homology	CDS	3973668	3974306	.	+	0	ID=cds3547;Parent=gene3644;Dbxref=Genbank:WP_002210395.1;Name=WP_002210395.1;gbkey=CDS;product=tellerium resistance protein TerY;protein_id=WP_002210395.1;transl_table=11
NC_004088.1	RefSeq	gene	3974339	3974980	.	+	.	ID=gene3645;Name=Y_RS18295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18295;old_locus_tag=y3583
NC_004088.1	Protein Homology	CDS	3974339	3974980	.	+	0	ID=cds3548;Parent=gene3645;Dbxref=Genbank:WP_002210396.1;Name=WP_002210396.1;gbkey=CDS;product=tellurium resistance protein TerX;protein_id=WP_002210396.1;transl_table=11
NC_004088.1	RefSeq	gene	3974982	3975620	.	+	.	ID=gene3646;Name=Y_RS18300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18300;old_locus_tag=y3584
NC_004088.1	Protein Homology	CDS	3974982	3975620	.	+	0	ID=cds3549;Parent=gene3646;Dbxref=Genbank:WP_002228094.1;Name=WP_002228094.1;gbkey=CDS;product=tellerium resistance protein TerY;protein_id=WP_002228094.1;transl_table=11
NC_004088.1	RefSeq	gene	3975722	3976705	.	+	.	ID=gene3647;Name=Y_RS18305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18305;old_locus_tag=y3585
NC_004088.1	Protein Homology	CDS	3975722	3976705	.	+	0	ID=cds3550;Parent=gene3647;Dbxref=Genbank:WP_002228095.1;Name=WP_002228095.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228095.1;transl_table=11
NC_004088.1	RefSeq	gene	3976761	3978494	.	+	.	ID=gene3648;Name=Y_RS18310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18310;old_locus_tag=y3586
NC_004088.1	Protein Homology	CDS	3976761	3978494	.	+	0	ID=cds3551;Parent=gene3648;Dbxref=Genbank:WP_002210398.1;Name=WP_002210398.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210398.1;transl_table=11
NC_004088.1	RefSeq	gene	3978526	3980025	.	+	.	ID=gene3649;Name=Y_RS18315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18315;old_locus_tag=y3587
NC_004088.1	Protein Homology	CDS	3978526	3980025	.	+	0	ID=cds3552;Parent=gene3649;Dbxref=Genbank:WP_002210399.1;Name=WP_002210399.1;gbkey=CDS;product=kinase;protein_id=WP_002210399.1;transl_table=11
NC_004088.1	RefSeq	gene	3980087	3980320	.	-	.	ID=gene3650;Name=Y_RS18320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18320
NC_004088.1	Protein Homology	CDS	3980087	3980320	.	-	0	ID=cds3553;Parent=gene3650;Dbxref=Genbank:WP_002214938.1;Name=WP_002214938.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214938.1;transl_table=11
NC_004088.1	RefSeq	gene	3980416	3980985	.	+	.	ID=gene3651;Name=Y_RS18325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18325;old_locus_tag=y3588
NC_004088.1	Protein Homology	CDS	3980416	3980985	.	+	0	ID=cds3554;Parent=gene3651;Dbxref=Genbank:WP_002210400.1;Name=WP_002210400.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210400.1;transl_table=11
NC_004088.1	RefSeq	gene	3981198	3983219	.	+	.	ID=gene3652;Name=fadH;gbkey=Gene;gene=fadH;gene_biotype=protein_coding;locus_tag=Y_RS18330;old_locus_tag=y3589
NC_004088.1	Protein Homology	CDS	3981198	3983219	.	+	0	ID=cds3555;Parent=gene3652;Dbxref=Genbank:WP_002210401.1;Name=WP_002210401.1;Note=catalyzes the formation of trans-2- enoyl-CoA from 2%2C4-dienoyl-CoA;gbkey=CDS;gene=fadH;product=2%2C4-dienoyl-CoA reductase;protein_id=WP_002210401.1;transl_table=11
NC_004088.1	RefSeq	gene	3983335	3984522	.	-	.	ID=gene3653;Name=Y_RS18335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18335;old_locus_tag=y3590
NC_004088.1	Protein Homology	CDS	3983335	3984522	.	-	0	ID=cds3556;Parent=gene3653;Dbxref=Genbank:WP_002210402.1;Name=WP_002210402.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase G;protein_id=WP_002210402.1;transl_table=11
NC_004088.1	RefSeq	gene	3985162	3987975	.	+	.	ID=gene3654;Name=Y_RS18340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18340;old_locus_tag=y3591
NC_004088.1	Protein Homology	CDS	3985162	3987975	.	+	0	ID=cds3557;Parent=gene3654;Dbxref=Genbank:WP_002353701.1;Name=WP_002353701.1;gbkey=CDS;product=autotransporter;protein_id=WP_002353701.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3986503	3986843	.	+	.	ID=id440;gbkey=repeat_region
NC_004088.1	RefSeq	gene	3988214	3988723	.	+	.	ID=gene3655;Name=Y_RS18345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18345;old_locus_tag=y3592
NC_004088.1	Protein Homology	CDS	3988214	3988723	.	+	0	ID=cds3558;Parent=gene3655;Dbxref=Genbank:WP_002210404.1;Name=WP_002210404.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210404.1;transl_table=11
NC_004088.1	RefSeq	gene	3988926	3989921	.	+	.	ID=gene3656;Name=Y_RS18350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18350;old_locus_tag=y3594
NC_004088.1	Protein Homology	CDS	3988926	3989921	.	+	0	ID=cds3559;Parent=gene3656;Dbxref=Genbank:WP_002210405.1;Name=WP_002210405.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_002210405.1;transl_table=11
NC_004088.1	RefSeq	gene	3990456	3991712	.	+	.	ID=gene3657;Name=Y_RS18355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18355;old_locus_tag=y3595
NC_004088.1	Protein Homology	CDS	3990456	3991712	.	+	0	ID=cds3560;Parent=gene3657;Dbxref=Genbank:WP_002216063.1;Name=WP_002216063.1;gbkey=CDS;product=serine/threonine transporter SstT;protein_id=WP_002216063.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	3991759	3992482	.	+	.	ID=id441;gbkey=repeat_region
NC_004088.1	RefSeq	region	3991768	3992477	.	+	.	ID=id442;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	3991913	3992371	.	+	.	ID=gene3658;Name=Y_RS18360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18360;old_locus_tag=y3596
NC_004088.1	Protein Homology	CDS	3991913	3992371	.	+	0	ID=cds3561;Parent=gene3658;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	3992489	3993019	.	-	.	ID=gene3659;Name=Y_RS18365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18365;old_locus_tag=y3597
NC_004088.1	Protein Homology	CDS	3992489	3993019	.	-	0	ID=cds3562;Parent=gene3659;Dbxref=Genbank:WP_002210407.1;Name=WP_002210407.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210407.1;transl_table=11
NC_004088.1	RefSeq	gene	3993172	3994662	.	-	.	ID=gene3660;Name=Y_RS18370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18370;old_locus_tag=y3598
NC_004088.1	Protein Homology	CDS	3993172	3994662	.	-	0	ID=cds3563;Parent=gene3660;Dbxref=Genbank:WP_002210408.1;Name=WP_002210408.1;gbkey=CDS;product=altronate hydrolase;protein_id=WP_002210408.1;transl_table=11
NC_004088.1	RefSeq	gene	3994673	3996124	.	-	.	ID=gene3661;Name=Y_RS18375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18375;old_locus_tag=y3599
NC_004088.1	Protein Homology	CDS	3994673	3996124	.	-	0	ID=cds3564;Parent=gene3661;Dbxref=Genbank:WP_002210409.1;Name=WP_002210409.1;Note=catalyzes the formation of D-tagaturonate from D-altronate;gbkey=CDS;product=altronate oxidoreductase;protein_id=WP_002210409.1;transl_table=11
NC_004088.1	RefSeq	gene	3996323	3997732	.	-	.	ID=gene3662;Name=Y_RS18380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18380;old_locus_tag=y3600
NC_004088.1	Protein Homology	CDS	3996323	3997732	.	-	0	ID=cds3565;Parent=gene3662;Dbxref=Genbank:WP_002210410.1;Name=WP_002210410.1;Note=catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate%3B functions in glucuronic and galacturonic metabolism;gbkey=CDS;product=uronate isomerase;protein_id=WP_002210410.1;transl_table=11
NC_004088.1	RefSeq	gene	3998263	3998430	.	-	.	ID=gene3663;Name=Y_RS18385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18385
NC_004088.1	Protein Homology	CDS	3998263	3998430	.	-	0	ID=cds3566;Parent=gene3663;Dbxref=Genbank:WP_002362425.1;Name=WP_002362425.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002362425.1;transl_table=11
NC_004088.1	RefSeq	gene	3998480	3999781	.	+	.	ID=gene3664;Name=Y_RS18390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18390;old_locus_tag=y3601
NC_004088.1	Protein Homology	CDS	3998480	3999781	.	+	0	ID=cds3567;Parent=gene3664;Dbxref=Genbank:WP_002353699.1;Name=WP_002353699.1;Note=involved in the transport of aldohexuronates;gbkey=CDS;product=hexuronate transporter ExuT;protein_id=WP_002353699.1;transl_table=11
NC_004088.1	RefSeq	gene	4000044	4000838	.	+	.	ID=gene3665;Name=Y_RS18395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18395;old_locus_tag=y3602
NC_004088.1	Protein Homology	CDS	4000044	4000838	.	+	0	ID=cds3568;Parent=gene3665;Dbxref=Genbank:WP_002210412.1;Name=WP_002210412.1;Note=regulates the expression of uxuBA;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_002210412.1;transl_table=11
NC_004088.1	RefSeq	gene	4001087	4001620	.	+	.	ID=gene3666;Name=Y_RS18400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18400;old_locus_tag=y3603
NC_004088.1	Protein Homology	CDS	4001087	4001620	.	+	0	ID=cds3569;Parent=gene3666;Dbxref=Genbank:WP_002218957.1;Name=WP_002218957.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002218957.1;transl_table=11
NC_004088.1	RefSeq	gene	4001898	4002596	.	+	.	ID=gene3667;Name=Y_RS18405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18405;old_locus_tag=y3605
NC_004088.1	Protein Homology	CDS	4001898	4002596	.	+	0	ID=cds3570;Parent=gene3667;Dbxref=Genbank:WP_002210414.1;Name=WP_002210414.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210414.1;transl_table=11
NC_004088.1	RefSeq	gene	4002593	4002982	.	+	.	ID=gene3668;Name=Y_RS18410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18410;old_locus_tag=y3606
NC_004088.1	Protein Homology	CDS	4002593	4002982	.	+	0	ID=cds3571;Parent=gene3668;Dbxref=Genbank:WP_002210415.1;Name=WP_002210415.1;gbkey=CDS;product=modulator protein MzrA;protein_id=WP_002210415.1;transl_table=11
NC_004088.1	RefSeq	gene	4003208	4003588	.	+	.	ID=gene3669;Name=Y_RS18415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18415
NC_004088.1	Protein Homology	CDS	4003208	4003588	.	+	0	ID=cds3572;Parent=gene3669;Dbxref=Genbank:WP_002210416.1;Name=WP_002210416.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210416.1;transl_table=11
NC_004088.1	RefSeq	gene	4003592	4003738	.	+	.	ID=gene3670;Name=Y_RS18420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18420;old_locus_tag=y3608
NC_004088.1	Protein Homology	CDS	4003592	4003738	.	+	0	ID=cds3573;Parent=gene3670;Dbxref=Genbank:WP_002210417.1;Name=WP_002210417.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210417.1;transl_table=11
NC_004088.1	RefSeq	gene	4003743	4004048	.	+	.	ID=gene3671;Name=Y_RS18425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18425;old_locus_tag=y3609
NC_004088.1	Protein Homology	CDS	4003743	4004048	.	+	0	ID=cds3574;Parent=gene3671;Dbxref=Genbank:WP_002210418.1;Name=WP_002210418.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210418.1;transl_table=11
NC_004088.1	RefSeq	gene	4004051	4004446	.	+	.	ID=gene3672;Name=Y_RS18430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18430;old_locus_tag=y3610
NC_004088.1	Protein Homology	CDS	4004051	4004446	.	+	0	ID=cds3575;Parent=gene3672;Dbxref=Genbank:WP_002210419.1;Name=WP_002210419.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210419.1;transl_table=11
NC_004088.1	RefSeq	gene	4004443	4004727	.	+	.	ID=gene3673;Name=Y_RS18435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18435;old_locus_tag=y3611
NC_004088.1	Protein Homology	CDS	4004443	4004727	.	+	0	ID=cds3576;Parent=gene3673;Dbxref=Genbank:WP_002210420.1;Name=WP_002210420.1;gbkey=CDS;product=cell division protein FtsH;protein_id=WP_002210420.1;transl_table=11
NC_004088.1	RefSeq	gene	4005031	4005426	.	+	.	ID=gene3674;Name=Y_RS18440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18440;old_locus_tag=y3612
NC_004088.1	Protein Homology	CDS	4005031	4005426	.	+	0	ID=cds3577;Parent=gene3674;Dbxref=Genbank:WP_002210421.1;Name=WP_002210421.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210421.1;transl_table=11
NC_004088.1	RefSeq	gene	4005512	4005691	.	+	.	ID=gene3675;Name=Y_RS18445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18445;old_locus_tag=y3613
NC_004088.1	Protein Homology	CDS	4005512	4005691	.	+	0	ID=cds3578;Parent=gene3675;Dbxref=Genbank:WP_002210422.1;Name=WP_002210422.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_002210422.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4005617	4007702	.	+	.	ID=id443;gbkey=repeat_region
NC_004088.1	RefSeq	region	4005619	4007572	.	+	.	ID=id444;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4005705	4006727	.	+	.	ID=gene3676;Name=Y_RS18450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18450;old_locus_tag=y3614
NC_004088.1	Protein Homology	CDS	4005705	4006727	.	+	0	ID=cds3579;Parent=gene3676;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	4006727	4007506	.	+	.	ID=gene3677;Name=Y_RS18455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18455;old_locus_tag=y3615
NC_004088.1	Protein Homology	CDS	4006727	4007506	.	+	0	ID=cds3580;Parent=gene3677;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	region	4007573	4007698	.	-	.	ID=id445;Note=insertion element%3B partial;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4007768	4008154	.	-	.	ID=gene3678;Name=Y_RS18460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18460;old_locus_tag=y3616
NC_004088.1	Protein Homology	CDS	4007768	4008154	.	-	0	ID=cds3581;Parent=gene3678;Dbxref=Genbank:WP_002210424.1;Name=WP_002210424.1;gbkey=CDS;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_002210424.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4008231	4008406	.	+	.	ID=id446;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4008449	4011163	.	-	.	ID=gene3679;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;gene_synonym=azi,div;locus_tag=Y_RS18465;old_locus_tag=y3617
NC_004088.1	Protein Homology	CDS	4008449	4011163	.	-	0	ID=cds3582;Parent=gene3679;Dbxref=Genbank:WP_002210426.1;Name=WP_002210426.1;Note=functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins;gbkey=CDS;gene=secA;product=protein translocase subunit SecA;protein_id=WP_002210426.1;transl_table=11
NC_004088.1	RefSeq	gene	4011241	4011774	.	-	.	ID=gene3680;Name=Y_RS18470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18470;old_locus_tag=y3618
NC_004088.1	Protein Homology	CDS	4011241	4011774	.	-	0	ID=cds3583;Parent=gene3680;Dbxref=Genbank:WP_002210427.1;Name=WP_002210427.1;gbkey=CDS;product=secretion monitor;protein_id=WP_002210427.1;transl_table=11
NC_004088.1	RefSeq	gene	4011803	4012327	.	+	.	ID=gene3681;Name=Y_RS18475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18475;old_locus_tag=y3619
NC_004088.1	Protein Homology	CDS	4011803	4012327	.	+	0	ID=cds3584;Parent=gene3681;Dbxref=Genbank:WP_002210428.1;Name=WP_002210428.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210428.1;transl_table=11
NC_004088.1	RefSeq	gene	4012494	4013414	.	-	.	ID=gene3682;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=Y_RS18480;old_locus_tag=y3620
NC_004088.1	Protein Homology	CDS	4012494	4013414	.	-	0	ID=cds3585;Parent=gene3682;Dbxref=Genbank:WP_002228285.1;Name=WP_002228285.1;Note=zinc-dependent%3B catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis;gbkey=CDS;gene=lpxC;product=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;protein_id=WP_002228285.1;transl_table=11
NC_004088.1	RefSeq	gene	4013514	4014665	.	-	.	ID=gene3683;Name=Y_RS18485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18485;old_locus_tag=y3621
NC_004088.1	Protein Homology	CDS	4013514	4014665	.	-	0	ID=cds3586;Parent=gene3683;Dbxref=Genbank:WP_002210430.1;Name=WP_002210430.1;Note=GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function;gbkey=CDS;product=cell division protein FtsZ;protein_id=WP_002210430.1;transl_table=11
NC_004088.1	RefSeq	gene	4014738	4015994	.	-	.	ID=gene3684;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=Y_RS18490;old_locus_tag=y3622
NC_004088.1	Protein Homology	CDS	4014738	4015994	.	-	0	ID=cds3587;Parent=gene3684;Dbxref=Genbank:WP_002210431.1;Name=WP_002210431.1;Note=ATP-binding involved in recruitment of FtsK to Z ring%3B essential cell division protein%3B colocalizes with FtsZ through direct interaction to the septal ring structure%3B structurally similar to eukaryotic actin%3B binds directly to the cell membrane;gbkey=CDS;gene=ftsA;product=cell division protein FtsA;protein_id=WP_002210431.1;transl_table=11
NC_004088.1	RefSeq	gene	4016021	4016848	.	-	.	ID=gene3685;Name=Y_RS18495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18495;old_locus_tag=y3623
NC_004088.1	Protein Homology	CDS	4016021	4016848	.	-	0	ID=cds3588;Parent=gene3685;Dbxref=Genbank:WP_002228100.1;Name=WP_002228100.1;Note=involved in septum formation;gbkey=CDS;product=cell division protein FtsQ;protein_id=WP_002228100.1;transl_table=11
NC_004088.1	RefSeq	gene	4016850	4017770	.	-	.	ID=gene3686;Name=ddl;gbkey=Gene;gene=ddl;gene_biotype=protein_coding;locus_tag=Y_RS18500;old_locus_tag=y3624
NC_004088.1	Protein Homology	CDS	4016850	4017770	.	-	0	ID=cds3589;Parent=gene3686;Dbxref=Genbank:WP_002210432.1;Name=WP_002210432.1;Note=D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli;gbkey=CDS;gene=ddl;product=D-alanine--D-alanine ligase;protein_id=WP_002210432.1;transl_table=11
NC_004088.1	RefSeq	gene	4017763	4019238	.	-	.	ID=gene3687;Name=Y_RS18505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18505;old_locus_tag=y3625
NC_004088.1	Protein Homology	CDS	4017763	4019238	.	-	0	ID=cds3590;Parent=gene3687;Dbxref=Genbank:WP_002216457.1;Name=WP_002216457.1;gbkey=CDS;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_002216457.1;transl_table=11
NC_004088.1	RefSeq	gene	4019376	4020446	.	-	.	ID=gene3688;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=Y_RS18510;old_locus_tag=y3626
NC_004088.1	Protein Homology	CDS	4019376	4020446	.	-	0	ID=cds3591;Parent=gene3688;Dbxref=Genbank:WP_002210434.1;Name=WP_002210434.1;Note=N-acetylglucosaminyl transferase%3B UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis;gbkey=CDS;gene=murG;product=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase;protein_id=WP_002210434.1;transl_table=11
NC_004088.1	RefSeq	gene	4020443	4021645	.	-	.	ID=gene3689;Name=Y_RS18515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18515;old_locus_tag=y3627
NC_004088.1	Protein Homology	CDS	4020443	4021645	.	-	0	ID=cds3592;Parent=gene3689;Dbxref=Genbank:WP_002210435.1;Name=WP_002210435.1;Note=integral membrane protein involved in stabilizing FstZ ring during cell division;gbkey=CDS;product=cell division protein FtsW;protein_id=WP_002210435.1;transl_table=11
NC_004088.1	RefSeq	gene	4021645	4022961	.	-	.	ID=gene3690;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=Y_RS18520;old_locus_tag=y3628
NC_004088.1	Protein Homology	CDS	4021645	4022961	.	-	0	ID=cds3593;Parent=gene3690;Dbxref=Genbank:WP_002210436.1;Name=WP_002210436.1;Note=UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation;gbkey=CDS;gene=murD;product=UDP-N-acetylmuramoylalanine--D-glutamate ligase;protein_id=WP_002210436.1;transl_table=11
NC_004088.1	RefSeq	gene	4022964	4024046	.	-	.	ID=gene3691;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=Y_RS18525;old_locus_tag=y3629
NC_004088.1	Protein Homology	CDS	4022964	4024046	.	-	0	ID=cds3594;Parent=gene3691;Dbxref=Genbank:WP_002210437.1;Name=WP_002210437.1;Note=First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan;gbkey=CDS;gene=mraY;product=phospho-N-acetylmuramoyl-pentapeptide transferase;protein_id=WP_002210437.1;transl_table=11
NC_004088.1	RefSeq	gene	4024040	4025416	.	-	.	ID=gene3692;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=Y_RS18530;old_locus_tag=y3630
NC_004088.1	Protein Homology	CDS	4024040	4025416	.	-	0	ID=cds3595;Parent=gene3692;Dbxref=Genbank:WP_002210438.1;Name=WP_002210438.1;gbkey=CDS;gene=murF;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_002210438.1;transl_table=11
NC_004088.1	RefSeq	gene	4025413	4026900	.	-	.	ID=gene3693;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=Y_RS18535;old_locus_tag=y3631
NC_004088.1	Protein Homology	CDS	4025413	4026900	.	-	0	ID=cds3596;Parent=gene3693;Dbxref=Genbank:WP_002210439.1;Name=WP_002210439.1;Note=involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate;gbkey=CDS;gene=murE;product=UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C 6-diaminopimelate ligase;protein_id=WP_002210439.1;transl_table=11
NC_004088.1	RefSeq	gene	4026887	4028650	.	-	.	ID=gene3694;Name=Y_RS18540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18540;old_locus_tag=y3632
NC_004088.1	Protein Homology	CDS	4026887	4028650	.	-	0	ID=cds3597;Parent=gene3694;Dbxref=Genbank:WP_002210440.1;Name=WP_002210440.1;Note=penicillin-binding protein 3%3B transpeptidase involved in septal peptidoglycan synthesis;gbkey=CDS;product=penicillin-binding protein 3;protein_id=WP_002210440.1;transl_table=11
NC_004088.1	RefSeq	gene	4028716	4029033	.	-	.	ID=gene3695;Name=Y_RS18545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18545;old_locus_tag=y3633
NC_004088.1	Protein Homology	CDS	4028716	4029033	.	-	0	ID=cds3598;Parent=gene3695;Dbxref=Genbank:WP_002210441.1;Name=WP_002210441.1;gbkey=CDS;product=cell division protein FtsL;protein_id=WP_002210441.1;transl_table=11
NC_004088.1	RefSeq	gene	4029030	4029992	.	-	.	ID=gene3696;Name=Y_RS18550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18550;old_locus_tag=y3634
NC_004088.1	Protein Homology	CDS	4029030	4029992	.	-	0	ID=cds3599;Parent=gene3696;Dbxref=Genbank:WP_002210442.1;Name=WP_002210442.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase H;protein_id=WP_002210442.1;transl_table=11
NC_004088.1	RefSeq	gene	4029995	4030453	.	-	.	ID=gene3697;Name=Y_RS18555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18555;old_locus_tag=y3635
NC_004088.1	Protein Homology	CDS	4029995	4030453	.	-	0	ID=cds3600;Parent=gene3697;Dbxref=Genbank:WP_002210443.1;Name=WP_002210443.1;gbkey=CDS;product=transcriptional regulator MraZ;protein_id=WP_002210443.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4031022	4031194	.	+	.	ID=id447;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4031555	4031995	.	+	.	ID=gene3698;Name=Y_RS18560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18560;old_locus_tag=y3636
NC_004088.1	Protein Homology	CDS	4031555	4031995	.	+	0	ID=cds3601;Parent=gene3698;Dbxref=Genbank:WP_002210446.1;Name=WP_002210446.1;gbkey=CDS;product=alanine transporter;protein_id=WP_002210446.1;transl_table=11
NC_004088.1	RefSeq	gene	4032126	4033136	.	-	.	ID=gene3699;Name=Y_RS18565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18565;old_locus_tag=y3637
NC_004088.1	Protein Homology	CDS	4032126	4033136	.	-	0	ID=cds3602;Parent=gene3699;Dbxref=Genbank:WP_002210447.1;Name=WP_002210447.1;Note=binds D-fructose as an inducer%3B involved in regulation of operons for central pathways of carbon metabolism;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002210447.1;transl_table=11
NC_004088.1	RefSeq	gene	4033203	4033319	.	+	.	ID=gene3700;Name=Y_RS18570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18570
NC_004088.1	Protein Homology	CDS	4033203	4033319	.	+	0	ID=cds3603;Parent=gene3700;Dbxref=Genbank:WP_002217242.1;Name=WP_002217242.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217242.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	4033410	4033428	.	-	.	ID=id448;Dbxref=CollecTF:EXPSITE_00000db0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y3637;gbkey=protein_bind
NC_004088.1	RefSeq	repeat_region	4033529	4034250	.	+	.	ID=id449;gbkey=repeat_region
NC_004088.1	RefSeq	region	4033535	4034244	.	-	.	ID=id450;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4033641	4034099	.	-	.	ID=gene3701;Name=Y_RS18575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18575;old_locus_tag=y3638
NC_004088.1	Protein Homology	CDS	4033641	4034099	.	-	0	ID=cds3604;Parent=gene3701;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	4034298	4034792	.	-	.	ID=gene3702;Name=ilvH;gbkey=Gene;gene=ilvH;gene_biotype=protein_coding;locus_tag=Y_RS18580;old_locus_tag=y3639
NC_004088.1	Protein Homology	CDS	4034298	4034792	.	-	0	ID=cds3605;Parent=gene3702;Dbxref=Genbank:WP_002210448.1;Name=WP_002210448.1;Note=with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit;gbkey=CDS;gene=ilvH;product=acetolactate synthase;protein_id=WP_002210448.1;transl_table=11
NC_004088.1	RefSeq	gene	4034795	4036522	.	-	.	ID=gene3703;Name=Y_RS18585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18585;old_locus_tag=y3640
NC_004088.1	Protein Homology	CDS	4034795	4036522	.	-	0	ID=cds3606;Parent=gene3703;Dbxref=Genbank:WP_002228103.1;Name=WP_002228103.1;Note=catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive;gbkey=CDS;product=acetolactate synthase;protein_id=WP_002228103.1;transl_table=11
NC_004088.1	RefSeq	gene	4036841	4036951	.	-	.	ID=gene3704;Name=Y_RS18590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18590
NC_004088.1	Protein Homology	CDS	4036841	4036951	.	-	0	ID=cds3607;Parent=gene3704;Dbxref=Genbank:WP_002228104.1;Name=WP_002228104.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228104.1;transl_table=11
NC_004088.1	RefSeq	gene	4036982	4038787	.	-	.	ID=gene3705;Name=Y_RS18595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18595;old_locus_tag=y3641
NC_004088.1	Protein Homology	CDS	4036982	4038787	.	-	0	ID=cds3608;Parent=gene3705;Dbxref=Genbank:WP_002216437.1;Name=WP_002216437.1;gbkey=CDS;product=long-chain fatty acid--CoA ligase;protein_id=WP_002216437.1;transl_table=11
NC_004088.1	RefSeq	gene	4038784	4038990	.	-	.	ID=gene3706;Name=Y_RS18600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18600
NC_004088.1	Protein Homology	CDS	4038784	4038990	.	-	0	ID=cds3609;Parent=gene3706;Dbxref=Genbank:WP_002216435.1;Name=WP_002216435.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216435.1;transl_table=11
NC_004088.1	RefSeq	gene	4039341	4040297	.	-	.	ID=gene3707;Name=leuO;gbkey=Gene;gene=leuO;gene_biotype=protein_coding;locus_tag=Y_RS18605;old_locus_tag=y3642
NC_004088.1	Protein Homology	CDS	4039341	4040297	.	-	0	ID=cds3610;Parent=gene3707;Dbxref=Genbank:WP_002216434.1;Name=WP_002216434.1;Note=activator for leuABCD operon%3B member of LysR family of transcriptional activators;gbkey=CDS;gene=leuO;product=leucine transcriptional activator;protein_id=WP_002216434.1;transl_table=11
NC_004088.1	RefSeq	gene	4040975	4041190	.	+	.	ID=gene3708;Name=Y_RS18610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18610
NC_004088.1	Protein Homology	CDS	4040975	4041190	.	+	0	ID=cds3611;Parent=gene3708;Dbxref=Genbank:WP_002210452.1;Name=WP_002210452.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210452.1;transl_table=11
NC_004088.1	RefSeq	gene	4041459	4041629	.	+	.	ID=gene3709;Name=Y_RS18615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18615
NC_004088.1	Protein Homology	CDS	4041459	4041629	.	+	0	ID=cds3612;Parent=gene3709;Dbxref=Genbank:WP_002216432.1;Name=WP_002216432.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216432.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4041463	4042190	.	+	.	ID=id451;gbkey=repeat_region
NC_004088.1	RefSeq	region	4041474	4042183	.	+	.	ID=id452;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4041619	4042077	.	+	.	ID=gene3710;Name=Y_RS18620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18620;old_locus_tag=y3644
NC_004088.1	Protein Homology	CDS	4041619	4042077	.	+	0	ID=cds3613;Parent=gene3710;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	4042224	4043786	.	+	.	ID=gene3711;Name=Y_RS18625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18625;old_locus_tag=y3645
NC_004088.1	Protein Homology	CDS	4042224	4043786	.	+	0	ID=cds3614;Parent=gene3711;Dbxref=Genbank:WP_002224085.1;Name=WP_002224085.1;gbkey=CDS;product=2-isopropylmalate synthase;protein_id=WP_002224085.1;transl_table=11
NC_004088.1	RefSeq	gene	4043789	4044880	.	+	.	ID=gene3712;Name=Y_RS18630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18630;old_locus_tag=y3646
NC_004088.1	Protein Homology	CDS	4043789	4044880	.	+	0	ID=cds3615;Parent=gene3712;Dbxref=Genbank:WP_002210454.1;Name=WP_002210454.1;gbkey=CDS;product=3-isopropylmalate dehydrogenase;protein_id=WP_002210454.1;transl_table=11
NC_004088.1	RefSeq	gene	4044882	4046312	.	+	.	ID=gene3713;Name=Y_RS18635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18635;old_locus_tag=y3647
NC_004088.1	Protein Homology	CDS	4044882	4046312	.	+	0	ID=cds3616;Parent=gene3713;Dbxref=Genbank:WP_002210455.1;Name=WP_002210455.1;Note=dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate;gbkey=CDS;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_002210455.1;transl_table=11
NC_004088.1	RefSeq	gene	4046327	4046929	.	+	.	ID=gene3714;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=Y_RS18640;old_locus_tag=y3648
NC_004088.1	Protein Homology	CDS	4046327	4046929	.	+	0	ID=cds3617;Parent=gene3714;Dbxref=Genbank:WP_002210456.1;Name=WP_002210456.1;Note=catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D;gbkey=CDS;gene=leuD;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_002210456.1;transl_table=11
NC_004088.1	RefSeq	gene	4047170	4048351	.	-	.	ID=gene3715;Name=Y_RS18645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18645;old_locus_tag=y3649
NC_004088.1	Protein Homology	CDS	4047170	4048351	.	-	0	ID=cds3618;Parent=gene3715;Dbxref=Genbank:WP_002224086.1;Name=WP_002224086.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002224086.1;transl_table=11
NC_004088.1	RefSeq	gene	4048604	4048777	.	-	.	ID=gene3716;Name=Y_RS18650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18650
NC_004088.1	Protein Homology	CDS	4048604	4048777	.	-	0	ID=cds3619;Parent=gene3716;Dbxref=Genbank:WP_002214268.1;Name=WP_002214268.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214268.1;transl_table=11
NC_004088.1	RefSeq	gene	4049015	4050676	.	+	.	ID=gene3717;Name=Y_RS18655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18655;old_locus_tag=y3650
NC_004088.1	Protein Homology	CDS	4049015	4050676	.	+	0	ID=cds3620;Parent=gene3717;Dbxref=Genbank:WP_002231469.1;Name=WP_002231469.1;Note=activates sgrS under glucose-phosphate stress conditions;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002231469.1;transl_table=11
NC_004088.1	RefSeq	gene	4050777	4051061	.	-	.	ID=gene3718;Name=Y_RS18660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18660
NC_004088.1	Protein Homology	CDS	4050777	4051061	.	-	0	ID=cds3621;Parent=gene3718;Dbxref=Genbank:WP_002214269.1;Name=WP_002214269.1;gbkey=CDS;product=membrane protein;protein_id=WP_002214269.1;transl_table=11
NC_004088.1	RefSeq	gene	4051562	4052608	.	+	.	ID=gene3719;Name=tbpA;gbkey=Gene;gene=tbpA;gene_biotype=protein_coding;locus_tag=Y_RS18665;old_locus_tag=y3651
NC_004088.1	Protein Homology	CDS	4051562	4052608	.	+	0	ID=cds3622;Parent=gene3719;Dbxref=Genbank:WP_002210462.1;Name=WP_002210462.1;Note=part of the thiamine and TPP transport system tbpA-thiPQ;gbkey=CDS;gene=tbpA;product=thiamine ABC transporter substrate-binding protein;protein_id=WP_002210462.1;transl_table=11
NC_004088.1	RefSeq	gene	4052584	4054191	.	+	.	ID=gene3720;Name=thiP;gbkey=Gene;gene=thiP;gene_biotype=protein_coding;gene_synonym=sfuB;locus_tag=Y_RS18670;old_locus_tag=y3652
NC_004088.1	Protein Homology	CDS	4052584	4054191	.	+	0	ID=cds3623;Parent=gene3720;Dbxref=Genbank:WP_002214276.1;Name=WP_002214276.1;Note=permease%3B with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell%3B repressed in presence of exogenous thiamine;gbkey=CDS;gene=thiP;product=thiamine transporter membrane protein;protein_id=WP_002214276.1;transl_table=11
NC_004088.1	RefSeq	gene	4054178	4054888	.	+	.	ID=gene3721;Name=thiQ;gbkey=Gene;gene=thiQ;gene_biotype=protein_coding;locus_tag=Y_RS18675;old_locus_tag=y3653
NC_004088.1	Protein Homology	CDS	4054178	4054888	.	+	0	ID=cds3624;Parent=gene3721;Dbxref=Genbank:WP_002210464.1;Name=WP_002210464.1;Note=with TbpA and ThiP is part of the thiamine and TPP transport system;gbkey=CDS;gene=thiQ;product=thiamine import ATP-binding protein ThiQ;protein_id=WP_002210464.1;transl_table=11
NC_004088.1	RefSeq	gene	4054957	4055724	.	-	.	ID=gene3722;Name=Y_RS18680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18680;old_locus_tag=y3654
NC_004088.1	Protein Homology	CDS	4054957	4055724	.	-	0	ID=cds3625;Parent=gene3722;Dbxref=Genbank:WP_002210465.1;Name=WP_002210465.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210465.1;transl_table=11
NC_004088.1	RefSeq	gene	4055920	4058289	.	+	.	ID=gene3723;Name=Y_RS18685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18685;old_locus_tag=y3655
NC_004088.1	Protein Homology	CDS	4055920	4058289	.	+	0	ID=cds3626;Parent=gene3723;Dbxref=Genbank:WP_002210466.1;Name=WP_002210466.1;Note=Has polymerase%2C DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C;gbkey=CDS;product=DNA polymerase II;protein_id=WP_002210466.1;transl_table=11
NC_004088.1	RefSeq	gene	4058750	4061656	.	+	.	ID=gene3724;Name=Y_RS18690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18690;old_locus_tag=y3656
NC_004088.1	Protein Homology	CDS	4058750	4061656	.	+	0	ID=cds3627;Parent=gene3724;Dbxref=Genbank:WP_002220588.1;Name=WP_002220588.1;Note=transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP%2C when it is trapped or immobilized on tightly supercoiled DNA;gbkey=CDS;product=RNA polymerase-associated protein RapA;protein_id=WP_002220588.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4061699	4061869	.	+	.	ID=id453;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4061912	4062265	.	-	.	ID=gene3725;Name=Y_RS18695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18695;old_locus_tag=y3657
NC_004088.1	Protein Homology	CDS	4061912	4062265	.	-	0	ID=cds3628;Parent=gene3725;Dbxref=Genbank:WP_002210468.1;Name=WP_002210468.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210468.1;transl_table=11
NC_004088.1	RefSeq	gene	4062287	4065781	.	-	.	ID=gene3726;Name=Y_RS18700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18700;old_locus_tag=y3658
NC_004088.1	Protein Homology	CDS	4062287	4065781	.	-	0	ID=cds3629;Parent=gene3726;Dbxref=Genbank:WP_002228281.1;Name=WP_002228281.1;gbkey=CDS;product=membrane protein;protein_id=WP_002228281.1;transl_table=11
NC_004088.1	RefSeq	gene	4065790	4067400	.	-	.	ID=gene3727;Name=Y_RS18705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18705;old_locus_tag=y3659
NC_004088.1	Protein Homology	CDS	4065790	4067400	.	-	0	ID=cds3630;Parent=gene3727;Dbxref=Genbank:WP_002210469.1;Name=WP_002210469.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210469.1;transl_table=11
NC_004088.1	RefSeq	gene	4067397	4068752	.	-	.	ID=gene3728;Name=Y_RS18710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18710;old_locus_tag=y3660
NC_004088.1	Protein Homology	CDS	4067397	4068752	.	-	0	ID=cds3631;Parent=gene3728;Dbxref=Genbank:WP_002210470.1;Name=WP_002210470.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002210470.1;transl_table=11
NC_004088.1	RefSeq	gene	4068872	4069363	.	-	.	ID=gene3729;Name=Y_RS18715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18715
NC_004088.1	Protein Homology	CDS	4068872	4069363	.	-	0	ID=cds3632;Parent=gene3729;Dbxref=Genbank:WP_002210471.1;Name=WP_002210471.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002210471.1;transl_table=11
NC_004088.1	RefSeq	gene	4069356	4069721	.	-	.	ID=gene3730;Name=Y_RS18720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18720;old_locus_tag=y3662
NC_004088.1	Protein Homology	CDS	4069356	4069721	.	-	0	ID=cds3633;Parent=gene3730;Dbxref=Genbank:WP_002214737.1;Name=WP_002214737.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002214737.1;transl_table=11
NC_004088.1	RefSeq	gene	4069727	4070344	.	-	.	ID=gene3731;Name=Y_RS18725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18725;old_locus_tag=y3663
NC_004088.1	Protein Homology	CDS	4069727	4070344	.	-	0	ID=cds3634;Parent=gene3731;Dbxref=Genbank:WP_002210473.1;Name=WP_002210473.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210473.1;transl_table=11
NC_004088.1	RefSeq	gene	4070337	4071440	.	-	.	ID=gene3732;Name=Y_RS18730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18730;old_locus_tag=y3664
NC_004088.1	Protein Homology	CDS	4070337	4071440	.	-	0	ID=cds3635;Parent=gene3732;Dbxref=Genbank:WP_002214739.1;Name=WP_002214739.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214739.1;transl_table=11
NC_004088.1	RefSeq	gene	4071466	4073685	.	-	.	ID=gene3733;Name=Y_RS18735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18735;old_locus_tag=y3665
NC_004088.1	Protein Homology	CDS	4071466	4073685	.	-	0	ID=cds3636;Parent=gene3733;Dbxref=Genbank:WP_002224087.1;Name=WP_002224087.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224087.1;transl_table=11
NC_004088.1	RefSeq	gene	4073698	4076046	.	-	.	ID=gene3734;Name=Y_RS18740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18740;old_locus_tag=y3668
NC_004088.1	Protein Homology	CDS	4073698	4076046	.	-	0	ID=cds3637;Parent=gene3734;Dbxref=Genbank:WP_002210474.1;Name=WP_002210474.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_002210474.1;transl_table=11
NC_004088.1	RefSeq	gene	4076150	4078738	.	-	.	ID=gene3735;Name=Y_RS18745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18745;old_locus_tag=y3669
NC_004088.1	Protein Homology	CDS	4076150	4078738	.	-	0	ID=cds3638;Parent=gene3735;Dbxref=Genbank:WP_002210475.1;Name=WP_002210475.1;gbkey=CDS;product=peptidase;protein_id=WP_002210475.1;transl_table=11
NC_004088.1	RefSeq	gene	4078756	4079739	.	-	.	ID=gene3736;Name=Y_RS18750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18750;old_locus_tag=y3670
NC_004088.1	Protein Homology	CDS	4078756	4079739	.	-	0	ID=cds3639;Parent=gene3736;Dbxref=Genbank:WP_002210476.1;Name=WP_002210476.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002210476.1;transl_table=11
NC_004088.1	RefSeq	gene	4079732	4081576	.	-	.	ID=gene3737;Name=Y_RS18755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18755;old_locus_tag=y3671
NC_004088.1	Protein Homology	CDS	4079732	4081576	.	-	0	ID=cds3640;Parent=gene3737;Dbxref=Genbank:WP_002210477.1;Name=WP_002210477.1;gbkey=CDS;product=type VI secretion protein TssF;protein_id=WP_002210477.1;transl_table=11
NC_004088.1	RefSeq	gene	4081609	4082052	.	-	.	ID=gene3738;Name=Y_RS18760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18760;old_locus_tag=y3672
NC_004088.1	Protein Homology	CDS	4081609	4082052	.	-	0	ID=cds3641;Parent=gene3738;Dbxref=Genbank:WP_002210478.1;Name=WP_002210478.1;gbkey=CDS;product=lysozyme;protein_id=WP_002210478.1;transl_table=11
NC_004088.1	RefSeq	gene	4082126	4082644	.	-	.	ID=gene3739;Name=Y_RS18765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18765;old_locus_tag=y3673
NC_004088.1	Protein Homology	CDS	4082126	4082644	.	-	0	ID=cds3642;Parent=gene3739;Dbxref=Genbank:WP_002210479.1;Name=WP_002210479.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_002210479.1;transl_table=11
NC_004088.1	RefSeq	gene	4082807	4084309	.	-	.	ID=gene3740;Name=Y_RS18770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18770;old_locus_tag=y3674
NC_004088.1	Protein Homology	CDS	4082807	4084309	.	-	0	ID=cds3643;Parent=gene3740;Dbxref=Genbank:WP_002210480.1;Name=WP_002210480.1;gbkey=CDS;product=type VI secretion protein EvpB;protein_id=WP_002210480.1;transl_table=11
NC_004088.1	RefSeq	gene	4084318	4084878	.	-	.	ID=gene3741;Name=Y_RS18775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18775;old_locus_tag=y3675
NC_004088.1	Protein Homology	CDS	4084318	4084878	.	-	0	ID=cds3644;Parent=gene3741;Dbxref=Genbank:WP_002210481.1;Name=WP_002210481.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210481.1;transl_table=11
NC_004088.1	RefSeq	gene	4084889	4085902	.	-	.	ID=gene3742;Name=Y_RS18780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18780;old_locus_tag=y3676
NC_004088.1	Protein Homology	CDS	4084889	4085902	.	-	0	ID=cds3645;Parent=gene3742;Dbxref=Genbank:WP_002210482.1;Name=WP_002210482.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210482.1;transl_table=11
NC_004088.1	RefSeq	gene	4086232	4086975	.	+	.	ID=gene3743;Name=Y_RS18785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18785;old_locus_tag=y3677
NC_004088.1	Protein Homology	CDS	4086232	4086975	.	+	0	ID=cds3646;Parent=gene3743;Dbxref=Genbank:WP_002214747.1;Name=WP_002214747.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214747.1;transl_table=11
NC_004088.1	RefSeq	gene	4088198	4088818	.	+	.	ID=gene3744;Name=Y_RS18790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18790;old_locus_tag=y3678
NC_004088.1	Protein Homology	CDS	4088198	4088818	.	+	0	ID=cds3647;Parent=gene3744;Dbxref=Genbank:WP_002210485.1;Name=WP_002210485.1;Note=catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase A;protein_id=WP_002210485.1;transl_table=11
NC_004088.1	RefSeq	gene	4089116	4089949	.	-	.	ID=gene3745;Name=djlA;gbkey=Gene;gene=djlA;gene_biotype=protein_coding;locus_tag=Y_RS18795;old_locus_tag=y3679
NC_004088.1	Protein Homology	CDS	4089116	4089949	.	-	0	ID=cds3648;Parent=gene3745;Dbxref=Genbank:WP_002210486.1;Name=WP_002210486.1;Note=functions as a co-chaperone with DnaK%3B involved in regulation of colanic acid capsule%3B inner membrane protein%3B dimerized via transmembrane domain%3B J-like domain is cytoplasmic and can functionally substitute for DnaJ%3B stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system;gbkey=CDS;gene=djlA;product=dnaJ-like protein DjlA;protein_id=WP_002210486.1;transl_table=11
NC_004088.1	RefSeq	gene	4090134	4092476	.	+	.	ID=gene3746;Name=Y_RS18800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18800;old_locus_tag=y3680
NC_004088.1	Protein Homology	CDS	4090134	4092476	.	+	0	ID=cds3649;Parent=gene3746;Dbxref=Genbank:WP_002228111.1;Name=WP_002228111.1;Note=is involved in outer membrane permeability;gbkey=CDS;product=LPS-assembly protein LptD;protein_id=WP_002228111.1;transl_table=11
NC_004088.1	RefSeq	gene	4092544	4093848	.	+	.	ID=gene3747;Name=Y_RS18805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18805;old_locus_tag=y3681
NC_004088.1	Protein Homology	CDS	4092544	4093848	.	+	0	ID=cds3650;Parent=gene3747;Dbxref=Genbank:WP_002210488.1;Name=WP_002210488.1;Note=Chaperone involved in the folding of extracytoplasmic proteins%2C especially OmpA%2C OmpF and LamB;gbkey=CDS;product=chaperone SurA;protein_id=WP_002210488.1;transl_table=11
NC_004088.1	RefSeq	gene	4093832	4094827	.	+	.	ID=gene3748;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=Y_RS18810;old_locus_tag=y3682
NC_004088.1	Protein Homology	CDS	4093832	4094827	.	+	0	ID=cds3651;Parent=gene3748;Dbxref=Genbank:WP_002210489.1;Name=WP_002210489.1;Note=catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate);gbkey=CDS;gene=pdxA;product=4-hydroxythreonine-4-phosphate dehydrogenase;protein_id=WP_002210489.1;transl_table=11
NC_004088.1	RefSeq	gene	4094820	4095638	.	+	.	ID=gene3749;Name=ksgA;gbkey=Gene;gene=ksgA;gene_biotype=protein_coding;locus_tag=Y_RS18815;old_locus_tag=y3683
NC_004088.1	Protein Homology	CDS	4094820	4095638	.	+	0	ID=cds3652;Parent=gene3749;Dbxref=Genbank:WP_002210490.1;Name=WP_002210490.1;Note=in Escherichia coli this enzyme catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin%3B members of this protein family have secondary functions;gbkey=CDS;gene=ksgA;product=ribosomal RNA small subunit methyltransferase A;protein_id=WP_002210490.1;transl_table=11
NC_004088.1	RefSeq	gene	4095652	4096029	.	+	.	ID=gene3750;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=Y_RS18820;old_locus_tag=y3684
NC_004088.1	Protein Homology	CDS	4095652	4096029	.	+	0	ID=cds3653;Parent=gene3750;Dbxref=Genbank:WP_002210491.1;Name=WP_002210491.1;Note=protein associated with Co2+ and Mg2+ efflux;gbkey=CDS;gene=apaG;product=protein ApaG;protein_id=WP_002210491.1;transl_table=11
NC_004088.1	RefSeq	gene	4096046	4096915	.	+	.	ID=gene3751;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;locus_tag=Y_RS18825;old_locus_tag=y3685
NC_004088.1	Protein Homology	CDS	4096046	4096915	.	+	0	ID=cds3654;Parent=gene3751;Dbxref=Genbank:WP_002210492.1;Name=WP_002210492.1;Note=hydrolyzes P(1)%2CP(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP;gbkey=CDS;gene=apaH;product=bis(5'-nucleosyl)-tetraphosphatase symmetrical;protein_id=WP_002210492.1;transl_table=11
NC_004088.1	RefSeq	gene	4097005	4097469	.	-	.	ID=gene3752;Name=Y_RS18830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18830;old_locus_tag=y3686
NC_004088.1	Protein Homology	CDS	4097005	4097469	.	-	0	ID=cds3655;Parent=gene3752;Dbxref=Genbank:WP_002210493.1;Name=WP_002210493.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210493.1;transl_table=11
NC_004088.1	RefSeq	gene	4097596	4097817	.	-	.	ID=gene3753;Name=Y_RS18835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18835
NC_004088.1	Protein Homology	CDS	4097596	4097817	.	-	0	ID=cds3656;Parent=gene3753;Dbxref=Genbank:WP_002210494.1;Name=WP_002210494.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210494.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4098240	4098960	.	+	.	ID=id454;gbkey=repeat_region
NC_004088.1	RefSeq	region	4098246	4098955	.	-	.	ID=id455;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4098352	4098810	.	-	.	ID=gene3754;Name=Y_RS18840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18840;old_locus_tag=y3687
NC_004088.1	Protein Homology	CDS	4098352	4098810	.	-	0	ID=cds3657;Parent=gene3754;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	4098800	4098955	.	-	.	ID=gene3755;Name=Y_RS18845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18845
NC_004088.1	Protein Homology	CDS	4098800	4098955	.	-	0	ID=cds3658;Parent=gene3755;Dbxref=Genbank:WP_002213757.1;Name=WP_002213757.1;gbkey=CDS;product=invasin;protein_id=WP_002213757.1;transl_table=11
NC_004088.1	RefSeq	gene	4099022	4099504	.	-	.	ID=gene3756;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;locus_tag=Y_RS18850;old_locus_tag=y3688
NC_004088.1	Protein Homology	CDS	4099022	4099504	.	-	0	ID=cds3659;Parent=gene3756;Dbxref=Genbank:WP_002210497.1;Name=WP_002210497.1;Note=catalyzes the reduction of dihydrofolate to tetrahydrofolate;gbkey=CDS;gene=folA;product=dihydrofolate reductase;protein_id=WP_002210497.1;transl_table=11
NC_004088.1	RefSeq	gene	4099654	4100109	.	-	.	ID=gene3757;Name=Y_RS18855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18855;old_locus_tag=y3689
NC_004088.1	Protein Homology	CDS	4099654	4100109	.	-	0	ID=cds3660;Parent=gene3757;Dbxref=Genbank:WP_002210498.1;Name=WP_002210498.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210498.1;transl_table=11
NC_004088.1	RefSeq	gene	4100106	4100906	.	-	.	ID=gene3758;Name=Y_RS18860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18860;old_locus_tag=y3690
NC_004088.1	Protein Homology	CDS	4100106	4100906	.	-	0	ID=cds3661;Parent=gene3758;Dbxref=Genbank:WP_002210499.1;Name=WP_002210499.1;gbkey=CDS;product=membrane protein;protein_id=WP_002210499.1;transl_table=11
NC_004088.1	RefSeq	gene	4101230	4101844	.	+	.	ID=gene3759;Name=Y_RS18865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18865;old_locus_tag=y3691
NC_004088.1	Protein Homology	CDS	4101230	4101844	.	+	0	ID=cds3662;Parent=gene3759;Dbxref=Genbank:WP_002210501.1;Name=WP_002210501.1;gbkey=CDS;product=lysine transporter LysE;protein_id=WP_002210501.1;transl_table=11
NC_004088.1	RefSeq	gene	4102072	4105305	.	-	.	ID=gene3760;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=Y_RS18870;old_locus_tag=y3692
NC_004088.1	Protein Homology	CDS	4102072	4105305	.	-	0	ID=cds3663;Parent=gene3760;Dbxref=Genbank:WP_002210502.1;Name=WP_002210502.1;Note=four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity;gbkey=CDS;gene=carB;product=carbamoyl-phosphate synthase large chain;protein_id=WP_002210502.1;transl_table=11
NC_004088.1	RefSeq	gene	4105321	4106496	.	-	.	ID=gene3761;Name=Y_RS18875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18875;old_locus_tag=y3693
NC_004088.1	Protein Homology	CDS	4105321	4106496	.	-	0	ID=cds3664;Parent=gene3761;Dbxref=Genbank:WP_002224759.1;Name=WP_002224759.1;Note=catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers;gbkey=CDS;product=carbamoyl-phosphate synthase small chain;protein_id=WP_002224759.1;transl_table=11
NC_004088.1	RefSeq	gene	4106969	4107790	.	-	.	ID=gene3762;Name=Y_RS18880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18880;old_locus_tag=y3694
NC_004088.1	Protein Homology	CDS	4106969	4107790	.	-	0	ID=cds3665;Parent=gene3762;Dbxref=Genbank:WP_002210504.1;Name=WP_002210504.1;Note=catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_002210504.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4108132	4108854	.	+	.	ID=id456;gbkey=repeat_region
NC_004088.1	RefSeq	region	4108137	4108846	.	-	.	ID=id457;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4108243	4108701	.	-	.	ID=gene3763;Name=Y_RS18885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18885;old_locus_tag=y3695
NC_004088.1	Protein Homology	CDS	4108243	4108701	.	-	0	ID=cds3666;Parent=gene3763;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	4108691	4108861	.	-	.	ID=gene3764;Name=Y_RS18890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18890
NC_004088.1	Protein Homology	CDS	4108691	4108861	.	-	0	ID=cds3667;Parent=gene3764;Dbxref=Genbank:WP_002216778.1;Name=WP_002216778.1;gbkey=CDS;product=invasin;protein_id=WP_002216778.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4108870	4109007	.	+	.	ID=id458;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4108890	4109015	.	-	.	ID=gene3765;Name=Y_RS18895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18895
NC_004088.1	Protein Homology	CDS	4108890	4109015	.	-	0	ID=cds3668;Parent=gene3765;Dbxref=Genbank:WP_002210505.1;Name=WP_002210505.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002210505.1;transl_table=11
NC_004088.1	RefSeq	gene	4109083	4110036	.	-	.	ID=gene3766;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=Y_RS18900;old_locus_tag=y3697
NC_004088.1	Protein Homology	CDS	4109083	4110036	.	-	0	ID=cds3669;Parent=gene3766;Dbxref=Genbank:WP_002210506.1;Name=WP_002210506.1;Note=catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway;gbkey=CDS;gene=ispH;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_002210506.1;transl_table=11
NC_004088.1	RefSeq	gene	4110017	4110475	.	-	.	ID=gene3767;Name=Y_RS18905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18905;old_locus_tag=y3698
NC_004088.1	Protein Homology	CDS	4110017	4110475	.	-	0	ID=cds3670;Parent=gene3767;Dbxref=Genbank:WP_002228112.1;Name=WP_002228112.1;Note=rotamase%3B accelerates isomerization of the peptidyl prolyl bond%2C involved in the folding of proteases;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_002228112.1;transl_table=11
NC_004088.1	RefSeq	gene	4110543	4111052	.	-	.	ID=gene3768;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=Y_RS18910;old_locus_tag=y3699
NC_004088.1	Protein Homology	CDS	4110543	4111052	.	-	0	ID=cds3671;Parent=gene3768;Dbxref=Genbank:WP_002210508.1;Name=WP_002210508.1;Note=lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis;gbkey=CDS;gene=lspA;product=lipoprotein signal peptidase;protein_id=WP_002210508.1;transl_table=11
NC_004088.1	RefSeq	gene	4111052	4113868	.	-	.	ID=gene3769;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=Y_RS18915;old_locus_tag=y3700
NC_004088.1	Protein Homology	CDS	4111052	4113868	.	-	0	ID=cds3672;Parent=gene3769;Dbxref=Genbank:WP_002210509.1;Name=WP_002210509.1;Note=IleRS%3B catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile)%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile)%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 1 subfamily%3B some organisms carry two different copies of this enzyme;gbkey=CDS;gene=ileS;product=isoleucine--tRNA ligase;protein_id=WP_002210509.1;transl_table=11
NC_004088.1	RefSeq	gene	4113900	4114838	.	-	.	ID=gene3770;Name=Y_RS18920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18920;old_locus_tag=y3701
NC_004088.1	Protein Homology	CDS	4113900	4114838	.	-	0	ID=cds3673;Parent=gene3770;Dbxref=Genbank:WP_002210510.1;Name=WP_002210510.1;gbkey=CDS;product=riboflavin biosynthesis protein RibF;protein_id=WP_002210510.1;transl_table=11
NC_004088.1	RefSeq	gene	4115055	4115231	.	+	.	ID=gene3771;Name=Y_RS18925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18925
NC_004088.1	Protein Homology	CDS	4115055	4115231	.	+	0	ID=cds3674;Parent=gene3771;Dbxref=Genbank:WP_002228113.1;Name=WP_002228113.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228113.1;transl_table=11
NC_004088.1	RefSeq	gene	4115253	4115516	.	+	.	ID=gene3772;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=Y_RS18930;old_locus_tag=y3702
NC_004088.1	Protein Homology	CDS	4115253	4115516	.	+	0	ID=cds3675;Parent=gene3772;Dbxref=Genbank:WP_002220715.1;Name=WP_002220715.1;Note=binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase;gbkey=CDS;gene=rpsT;product=30S ribosomal protein S20;protein_id=WP_002220715.1;transl_table=11
NC_004088.1	RefSeq	gene	4115647	4116546	.	-	.	ID=gene3773;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;locus_tag=Y_RS18935;old_locus_tag=y3703
NC_004088.1	Protein Homology	CDS	4115647	4116546	.	-	0	ID=cds3676;Parent=gene3773;Dbxref=Genbank:WP_002220713.1;Name=WP_002220713.1;Note=Na+/H+ antiporter regulatory protein%3B activates the genes nhaA and osmC;gbkey=CDS;gene=nhaR;product=transcriptional regulator;protein_id=WP_002220713.1;transl_table=11
NC_004088.1	RefSeq	gene	4116676	4117860	.	-	.	ID=gene3774;Name=nhaA;gbkey=Gene;gene=nhaA;gene_biotype=protein_coding;locus_tag=Y_RS18940;old_locus_tag=y3704
NC_004088.1	Protein Homology	CDS	4116676	4117860	.	-	0	ID=cds3677;Parent=gene3774;Dbxref=Genbank:WP_002220711.1;Name=WP_002220711.1;Note=exports sodium by using the electrochemical proton gradient to allow protons into the cell%3B functions in adaptation to high salinity and alkaline pH%3B activity increases at higher pH%3B downregulated at acidic pH;gbkey=CDS;gene=nhaA;product=Na+/H+ antiporter NhaA;protein_id=WP_002220711.1;transl_table=11
NC_004088.1	RefSeq	gene	4118103	4119242	.	-	.	ID=gene3775;Name=Y_RS18945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18945;old_locus_tag=y3705
NC_004088.1	Protein Homology	CDS	4118103	4119242	.	-	0	ID=cds3678;Parent=gene3775;Dbxref=Genbank:WP_002209249.1;Name=WP_002209249.1;Note=chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion;gbkey=CDS;product=molecular chaperone DnaJ;protein_id=WP_002209249.1;transl_table=11
NC_004088.1	RefSeq	gene	4119354	4121264	.	-	.	ID=gene3776;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=Y_RS18950;old_locus_tag=y3706
NC_004088.1	Protein Homology	CDS	4119354	4121264	.	-	0	ID=cds3679;Parent=gene3776;Dbxref=Genbank:WP_002209248.1;Name=WP_002209248.1;Note=heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria;gbkey=CDS;gene=dnaK;product=molecular chaperone DnaK;protein_id=WP_002209248.1;transl_table=11
NC_004088.1	RefSeq	gene	4121638	4122249	.	+	.	ID=gene3777;Name=Y_RS18955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18955;old_locus_tag=y3707
NC_004088.1	Protein Homology	CDS	4121638	4122249	.	+	0	ID=cds3680;Parent=gene3777;Dbxref=Genbank:WP_002209246.1;Name=WP_002209246.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209246.1;transl_table=11
NC_004088.1	RefSeq	gene	4122538	4124985	.	+	.	ID=gene3778;Name=Y_RS18960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18960;old_locus_tag=y3708
NC_004088.1	Protein Homology	CDS	4122538	4124985	.	+	0	ID=cds3681;Parent=gene3778;Dbxref=Genbank:WP_002209245.1;Name=WP_002209245.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_002209245.1;transl_table=11
NC_004088.1	RefSeq	gene	4125055	4126443	.	-	.	ID=gene3779;Name=Y_RS18965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18965;old_locus_tag=y3709
NC_004088.1	Protein Homology	CDS	4125055	4126443	.	-	0	ID=cds3682;Parent=gene3779;Dbxref=Genbank:WP_002209244.1;Name=WP_002209244.1;gbkey=CDS;product=MFS transporter;protein_id=WP_002209244.1;transl_table=11
NC_004088.1	RefSeq	gene	4126571	4127158	.	-	.	ID=gene3780;Name=mogA;gbkey=Gene;gene=mogA;gene_biotype=protein_coding;locus_tag=Y_RS18970;old_locus_tag=y3710
NC_004088.1	Protein Homology	CDS	4126571	4127158	.	-	0	ID=cds3683;Parent=gene3780;Dbxref=Genbank:WP_002209243.1;Name=WP_002209243.1;Note=forms a trimer%3B related to eukaryotic protein gephyrin%3B functions during molybdenum cofactor biosynthesis;gbkey=CDS;gene=mogA;product=molybdenum cofactor biosynthesis protein MogA;protein_id=WP_002209243.1;transl_table=11
NC_004088.1	RefSeq	gene	4127446	4128399	.	-	.	ID=gene3781;Name=Y_RS18975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18975;old_locus_tag=y3712
NC_004088.1	Protein Homology	CDS	4127446	4128399	.	-	0	ID=cds3684;Parent=gene3781;Dbxref=Genbank:WP_002209241.1;Name=WP_002209241.1;gbkey=CDS;product=transaldolase;protein_id=WP_002209241.1;transl_table=11
NC_004088.1	RefSeq	gene	4128931	4129707	.	+	.	ID=gene3782;Name=Y_RS18980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18980;old_locus_tag=y3714
NC_004088.1	Protein Homology	CDS	4128931	4129707	.	+	0	ID=cds3685;Parent=gene3782;Dbxref=Genbank:WP_002209240.1;Name=WP_002209240.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209240.1;transl_table=11
NC_004088.1	RefSeq	gene	4130524	4131813	.	-	.	ID=gene3783;Name=Y_RS18985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18985;old_locus_tag=y3715
NC_004088.1	Protein Homology	CDS	4130524	4131813	.	-	0	ID=cds3686;Parent=gene3783;Dbxref=Genbank:WP_002209239.1;Name=WP_002209239.1;gbkey=CDS;product=threonine synthase;protein_id=WP_002209239.1;transl_table=11
NC_004088.1	RefSeq	gene	4131817	4132746	.	-	.	ID=gene3784;Name=Y_RS18990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS18990;old_locus_tag=y3716
NC_004088.1	Protein Homology	CDS	4131817	4132746	.	-	0	ID=cds3687;Parent=gene3784;Dbxref=Genbank:WP_002209238.1;Name=WP_002209238.1;gbkey=CDS;product=homoserine kinase;protein_id=WP_002209238.1;transl_table=11
NC_004088.1	RefSeq	gene	4132749	4135208	.	-	.	ID=gene3785;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=Y_RS18995;old_locus_tag=y3718
NC_004088.1	Protein Homology	CDS	4132749	4135208	.	-	0	ID=cds3688;Parent=gene3785;Dbxref=Genbank:WP_002209237.1;Name=WP_002209237.1;Note=multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways;gbkey=CDS;gene=thrA;product=bifunctional aspartokinase I/homoserine dehydrogenase I;protein_id=WP_002209237.1;transl_table=11
NC_004088.1	RefSeq	gene	4136312	4137028	.	+	.	ID=gene3786;Name=Y_RS19000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19000;old_locus_tag=y3721
NC_004088.1	Protein Homology	CDS	4136312	4137028	.	+	0	ID=cds3689;Parent=gene3786;Dbxref=Genbank:WP_002209234.1;Name=WP_002209234.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002209234.1;transl_table=11
NC_004088.1	RefSeq	gene	4137202	4137669	.	-	.	ID=gene3787;Name=Y_RS19005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19005;old_locus_tag=y3722
NC_004088.1	Protein Homology	CDS	4137202	4137669	.	-	0	ID=cds3690;Parent=gene3787;Dbxref=Genbank:WP_002209232.1;Name=WP_002209232.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209232.1;transl_table=11
NC_004088.1	RefSeq	gene	4137895	4138761	.	+	.	ID=gene3788;Name=Y_RS19010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19010;old_locus_tag=y3723
NC_004088.1	Protein Homology	CDS	4137895	4138761	.	+	0	ID=cds3691;Parent=gene3788;Dbxref=Genbank:WP_002209231.1;Name=WP_002209231.1;Note=AraC family%3B binds to the right arm of the replication origin oriC;gbkey=CDS;product=RobA family efflux pump transcriptional activator;protein_id=WP_002209231.1;transl_table=11
NC_004088.1	RefSeq	gene	4138758	4139405	.	-	.	ID=gene3789;Name=Y_RS19015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19015;old_locus_tag=y3724
NC_004088.1	Protein Homology	CDS	4138758	4139405	.	-	0	ID=cds3692;Parent=gene3789;Dbxref=Genbank:WP_002209230.1;Name=WP_002209230.1;Note=catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate;gbkey=CDS;product=phosphoglycerate mutase GpmB;protein_id=WP_002209230.1;transl_table=11
NC_004088.1	RefSeq	gene	4139499	4140041	.	+	.	ID=gene3790;Name=yjjX;gbkey=Gene;gene=yjjX;gene_biotype=protein_coding;locus_tag=Y_RS19020;old_locus_tag=y3725
NC_004088.1	Protein Homology	CDS	4139499	4140041	.	+	0	ID=cds3693;Parent=gene3790;Dbxref=Genbank:WP_002209229.1;Name=WP_002209229.1;Note=pyrophosphatase%3B has activity against dUTP and dITP%3B the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226%3B in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms%3B in Escherichia coli overexpression of this gene leads to resistance to an HMP analog;gbkey=CDS;gene=yjjX;product=non-canonical purine NTP phosphatase;protein_id=WP_002209229.1;transl_table=11
NC_004088.1	RefSeq	gene	4140038	4140430	.	-	.	ID=gene3791;Name=Y_RS19025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19025;old_locus_tag=y3726
NC_004088.1	Protein Homology	CDS	4140038	4140430	.	-	0	ID=cds3694;Parent=gene3791;Dbxref=Genbank:WP_002209228.1;Name=WP_002209228.1;gbkey=CDS;product=Trp operon repressor;protein_id=WP_002209228.1;transl_table=11
NC_004088.1	RefSeq	gene	4140685	4142604	.	-	.	ID=gene3792;Name=Y_RS19030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19030;old_locus_tag=y3727
NC_004088.1	Protein Homology	CDS	4140685	4142604	.	-	0	ID=cds3695;Parent=gene3792;Dbxref=Genbank:WP_002209227.1;Name=WP_002209227.1;Note=catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan;gbkey=CDS;product=murein transglycosylase;protein_id=WP_002209227.1;transl_table=11
NC_004088.1	RefSeq	gene	4143174	4145900	.	+	.	ID=gene3793;Name=Y_RS19035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19035;old_locus_tag=y3728
NC_004088.1	Protein Homology	CDS	4143174	4145900	.	+	0	ID=cds3696;Parent=gene3793;Dbxref=Genbank:WP_002209226.1;Name=WP_002209226.1;gbkey=CDS;product=carbonate dehydratase;protein_id=WP_002209226.1;transl_table=11
NC_004088.1	RefSeq	gene	4146275	4146898	.	+	.	ID=gene3794;Name=Y_RS19040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19040;old_locus_tag=y3729
NC_004088.1	Protein Homology	CDS	4146275	4146898	.	+	0	ID=cds3697;Parent=gene3794;Dbxref=Genbank:WP_002209225.1;Name=WP_002209225.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209225.1;transl_table=11
NC_004088.1	RefSeq	gene	4146895	4148172	.	+	.	ID=gene3795;Name=Y_RS19045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19045;old_locus_tag=y3730
NC_004088.1	Protein Homology	CDS	4146895	4148172	.	+	0	ID=cds3698;Parent=gene3795;Dbxref=Genbank:WP_002223940.1;Name=WP_002223940.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_002223940.1;transl_table=11
NC_004088.1	RefSeq	gene	4148178	4148684	.	+	.	ID=gene3796;Name=Y_RS19050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19050;old_locus_tag=y3731
NC_004088.1	Protein Homology	CDS	4148178	4148684	.	+	0	ID=cds3699;Parent=gene3796;Dbxref=Genbank:WP_002215967.1;Name=WP_002215967.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002215967.1;transl_table=11
NC_004088.1	RefSeq	gene	4148888	4150035	.	+	.	ID=gene3797;Name=Y_RS19055;end_range=4150035,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS19055;partial=true;pseudo=true
NC_004088.1	Protein Homology	CDS	4148888	4150035	.	+	0	ID=cds3700;Parent=gene3797;Note=ChvD%3B in Agrobacterium tumefaciens%2C mutations in both Walker boxes were found to affect virulence;end_range=4150035,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=ABC transporter ATP-binding protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	repeat_region	4150032	4151990	.	+	.	ID=id459;gbkey=repeat_region
NC_004088.1	RefSeq	region	4150035	4151988	.	+	.	ID=id460;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4150121	4151143	.	+	.	ID=gene3798;Name=Y_RS19060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19060;old_locus_tag=y3732
NC_004088.1	Protein Homology	CDS	4150121	4151143	.	+	0	ID=cds3701;Parent=gene3798;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	4151143	4151922	.	+	.	ID=gene3799;Name=Y_RS19065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19065;old_locus_tag=y3733
NC_004088.1	Protein Homology	CDS	4151143	4151922	.	+	0	ID=cds3702;Parent=gene3799;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	4151983	4152489	.	+	.	ID=gene3800;Name=Y_RS19070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19070
NC_004088.1	Protein Homology	CDS	4151983	4152489	.	+	0	ID=cds3703;Parent=gene3800;Dbxref=Genbank:WP_025471095.1;Name=WP_025471095.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_025471095.1;transl_table=11
NC_004088.1	RefSeq	gene	4152635	4153765	.	-	.	ID=gene3801;Name=Y_RS19075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19075;old_locus_tag=y3735
NC_004088.1	Protein Homology	CDS	4152635	4153765	.	-	0	ID=cds3704;Parent=gene3801;Dbxref=Genbank:WP_002218755.1;Name=WP_002218755.1;gbkey=CDS;product=cell division protein Fic;protein_id=WP_002218755.1;transl_table=11
NC_004088.1	RefSeq	gene	4153922	4155194	.	-	.	ID=gene3802;Name=Y_RS19080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS19080;pseudo=true
NC_004088.1	Protein Homology	CDS	4153922	4155194	.	-	0	ID=cds3705;Parent=gene3802;Note=catalyzes the formation of NAD(+) from nicotinamide ribonucleotide%3B catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside%3B also has a regulatory function;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	4155353	4156735	.	-	.	ID=gene3803;Name=Y_RS19085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19085;old_locus_tag=y3737
NC_004088.1	Protein Homology	CDS	4155353	4156735	.	-	0	ID=cds3706;Parent=gene3803;Dbxref=Genbank:WP_002209220.1;Name=WP_002209220.1;Note=Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents;gbkey=CDS;product=DNA repair protein RadA;protein_id=WP_002209220.1;transl_table=11
NC_004088.1	RefSeq	gene	4156823	4157803	.	-	.	ID=gene3804;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=Y_RS19090;old_locus_tag=y3738
NC_004088.1	Protein Homology	CDS	4156823	4157803	.	-	0	ID=cds3707;Parent=gene3804;Dbxref=Genbank:WP_002209219.1;Name=WP_002209219.1;Note=catalyzes the formation of serine from O-phosphoserine;gbkey=CDS;gene=serB;product=phosphoserine phosphatase;protein_id=WP_002209219.1;transl_table=11
NC_004088.1	RefSeq	gene	4158035	4158736	.	+	.	ID=gene3805;Name=Y_RS19095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19095;old_locus_tag=y3739
NC_004088.1	Protein Homology	CDS	4158035	4158736	.	+	0	ID=cds3708;Parent=gene3805;Dbxref=Genbank:WP_002209218.1;Name=WP_002209218.1;gbkey=CDS;product=protein Smp;protein_id=WP_002209218.1;transl_table=11
NC_004088.1	RefSeq	gene	4158848	4159567	.	-	.	ID=gene3806;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;locus_tag=Y_RS19100;old_locus_tag=y3740
NC_004088.1	Protein Homology	CDS	4158848	4159567	.	-	0	ID=cds3709;Parent=gene3806;Dbxref=Genbank:WP_002209217.1;Name=WP_002209217.1;Note=catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate;gbkey=CDS;gene=deoD;product=purine nucleoside phosphorylase;protein_id=WP_002209217.1;transl_table=11
NC_004088.1	RefSeq	gene	4159692	4160915	.	-	.	ID=gene3807;Name=Y_RS19105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19105;old_locus_tag=y3741
NC_004088.1	Protein Homology	CDS	4159692	4160915	.	-	0	ID=cds3710;Parent=gene3807;Dbxref=Genbank:WP_002209216.1;Name=WP_002209216.1;gbkey=CDS;product=phosphopentomutase;protein_id=WP_002209216.1;transl_table=11
NC_004088.1	RefSeq	gene	4161047	4161826	.	-	.	ID=gene3808;Name=Y_RS19110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19110
NC_004088.1	Protein Homology	CDS	4161047	4161826	.	-	0	ID=cds3711;Parent=gene3808;Dbxref=Genbank:WP_002231521.1;Name=WP_002231521.1;gbkey=CDS;product=thymidine phosphorylase;protein_id=WP_002231521.1;transl_table=11
NC_004088.1	RefSeq	gene	4161823	4162365	.	-	.	ID=gene3809;Name=Y_RS19115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19115
NC_004088.1	Protein Homology	CDS	4161823	4162365	.	-	0	ID=cds3712;Parent=gene3809;Dbxref=Genbank:WP_002353659.1;Name=WP_002353659.1;gbkey=CDS;product=thymidine phosphorylase;protein_id=WP_002353659.1;transl_table=11
NC_004088.1	RefSeq	gene	4162486	4163283	.	-	.	ID=gene3810;Name=Y_RS19120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19120;old_locus_tag=y3743
NC_004088.1	Protein Homology	CDS	4162486	4163283	.	-	0	ID=cds3713;Parent=gene3810;Dbxref=Genbank:WP_002216078.1;Name=WP_002216078.1;Note=catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate;gbkey=CDS;product=deoxyribose-phosphate aldolase 2;protein_id=WP_002216078.1;transl_table=11
NC_004088.1	RefSeq	gene	4163891	4165168	.	-	.	ID=gene3811;Name=Y_RS19125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19125;old_locus_tag=y3744
NC_004088.1	Protein Homology	CDS	4163891	4165168	.	-	0	ID=cds3714;Parent=gene3811;Dbxref=Genbank:WP_032465614.1;Name=WP_032465614.1;gbkey=CDS;product=nucleoside transporter NupC;protein_id=WP_032465614.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4165334	4165505	.	+	.	ID=id461;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4165697	4166485	.	-	.	ID=gene3812;Name=Y_RS19130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19130;old_locus_tag=y3745
NC_004088.1	Protein Homology	CDS	4165697	4166485	.	-	0	ID=cds3715;Parent=gene3812;Dbxref=Genbank:WP_002228116.1;Name=WP_002228116.1;gbkey=CDS;product=DNAse;protein_id=WP_002228116.1;transl_table=11
NC_004088.1	RefSeq	gene	4166522	4167790	.	-	.	ID=gene3813;Name=Y_RS19135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19135;old_locus_tag=y3746
NC_004088.1	Protein Homology	CDS	4166522	4167790	.	-	0	ID=cds3716;Parent=gene3813;Dbxref=Genbank:WP_002209212.1;Name=WP_002209212.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_002209212.1;transl_table=11
NC_004088.1	RefSeq	gene	4167867	4168028	.	-	.	ID=gene3814;Name=Y_RS19140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19140;old_locus_tag=y3747
NC_004088.1	Protein Homology	CDS	4167867	4168028	.	-	0	ID=cds3717;Parent=gene3814;Dbxref=Genbank:WP_002209211.1;Name=WP_002209211.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209211.1;transl_table=11
NC_004088.1	RefSeq	gene	4168195	4168809	.	-	.	ID=gene3815;Name=Y_RS19145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19145;old_locus_tag=y3748
NC_004088.1	Protein Homology	CDS	4168195	4168809	.	-	0	ID=cds3718;Parent=gene3815;Dbxref=Genbank:WP_002209210.1;Name=WP_002209210.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209210.1;transl_table=11
NC_004088.1	RefSeq	gene	4169136	4170725	.	-	.	ID=gene3816;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=Y_RS19150;old_locus_tag=y3749
NC_004088.1	Protein Homology	CDS	4169136	4170725	.	-	0	ID=cds3719;Parent=gene3816;Dbxref=Genbank:WP_002209209.1;Name=WP_002209209.1;Note=stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein;gbkey=CDS;gene=prfC;product=peptide chain release factor 3;protein_id=WP_002209209.1;transl_table=11
NC_004088.1	RefSeq	gene	4170904	4171347	.	-	.	ID=gene3817;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=Y_RS19155;old_locus_tag=y3751
NC_004088.1	Protein Homology	CDS	4170904	4171347	.	-	0	ID=cds3720;Parent=gene3817;Dbxref=Genbank:WP_011055796.1;Name=WP_011055796.1;Note=alanine acetyltransferase that specifically acetylates ribosomal protein S18;gbkey=CDS;gene=rimI;product=alanine acetyltransferase;protein_id=WP_011055796.1;transl_table=11
NC_004088.1	RefSeq	gene	4171292	4171729	.	-	.	ID=gene3818;Name=Y_RS19160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19160;old_locus_tag=y3752
NC_004088.1	Protein Homology	CDS	4171292	4171729	.	-	0	ID=cds3721;Parent=gene3818;Dbxref=Genbank:WP_002209207.1;Name=WP_002209207.1;Note=with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB;gbkey=CDS;product=DNA polymerase III subunit psi;protein_id=WP_002209207.1;transl_table=11
NC_004088.1	RefSeq	gene	4171842	4172885	.	+	.	ID=gene3819;Name=Y_RS19165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19165;old_locus_tag=y3753
NC_004088.1	Protein Homology	CDS	4171842	4172885	.	+	0	ID=cds3722;Parent=gene3819;Dbxref=Genbank:WP_002209206.1;Name=WP_002209206.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase C;protein_id=WP_002209206.1;transl_table=11
NC_004088.1	RefSeq	gene	4173142	4173228	.	+	.	ID=gene3820;Name=Y_RS19170;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS19170;old_locus_tag=yt070
NC_004088.1	tRNAscan-SE	tRNA	4173142	4173228	.	+	.	ID=rna90;Parent=gene3820;anticodon=(pos:4173176..4173178);gbkey=tRNA;product=tRNA-Leu
NC_004088.1	tRNAscan-SE	exon	4173142	4173228	.	+	.	ID=id462;Parent=rna90;anticodon=(pos:4173176..4173178);gbkey=tRNA;product=tRNA-Leu
NC_004088.1	RefSeq	gene	4173398	4173730	.	-	.	ID=gene3821;Name=Y_RS19175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19175;old_locus_tag=y3754
NC_004088.1	Protein Homology	CDS	4173398	4173730	.	-	0	ID=cds3723;Parent=gene3821;Dbxref=Genbank:WP_002215232.1;Name=WP_002215232.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215232.1;transl_table=11
NC_004088.1	RefSeq	gene	4173979	4175151	.	+	.	ID=gene3822;Name=Y_RS19180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19180;old_locus_tag=y3756
NC_004088.1	Protein Homology	CDS	4173979	4175151	.	+	0	ID=cds3724;Parent=gene3822;Dbxref=Genbank:WP_002209204.1;Name=WP_002209204.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_002209204.1;transl_table=11
NC_004088.1	RefSeq	gene	4175692	4176777	.	-	.	ID=gene3823;Name=Y_RS19185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19185;old_locus_tag=y3757
NC_004088.1	Protein Homology	CDS	4175692	4176777	.	-	0	ID=cds3725;Parent=gene3823;Dbxref=Genbank:WP_002209202.1;Name=WP_002209202.1;gbkey=CDS;product=pectinesterase;protein_id=WP_002209202.1;transl_table=11
NC_004088.1	RefSeq	gene	4177110	4177433	.	+	.	ID=gene3824;Name=Y_RS19190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19190;old_locus_tag=y3758
NC_004088.1	Protein Homology	CDS	4177110	4177433	.	+	0	ID=cds3726;Parent=gene3824;Dbxref=Genbank:WP_002353658.1;Name=WP_002353658.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002353658.1;transl_table=11
NC_004088.1	RefSeq	gene	4177616	4177912	.	+	.	ID=gene3825;Name=Y_RS19195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19195
NC_004088.1	Protein Homology	CDS	4177616	4177912	.	+	0	ID=cds3727;Parent=gene3825;Dbxref=Genbank:WP_002209201.1;Name=WP_002209201.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209201.1;transl_table=11
NC_004088.1	RefSeq	gene	4178046	4178237	.	+	.	ID=gene3826;Name=Y_RS19200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19200
NC_004088.1	Protein Homology	CDS	4178046	4178237	.	+	0	ID=cds3728;Parent=gene3826;Dbxref=Genbank:WP_016256142.1;Name=WP_016256142.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016256142.1;transl_table=11
NC_004088.1	RefSeq	gene	4178273	4181359	.	-	.	ID=gene3827;Name=Y_RS19205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19205;old_locus_tag=y3759
NC_004088.1	Protein Homology	CDS	4178273	4181359	.	-	0	ID=cds3729;Parent=gene3827;Dbxref=Genbank:WP_002209200.1;Name=WP_002209200.1;gbkey=CDS;product=multidrug transporter AcrB;protein_id=WP_002209200.1;transl_table=11
NC_004088.1	RefSeq	gene	4181359	4182441	.	-	.	ID=gene3828;Name=Y_RS19210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19210;old_locus_tag=y3760
NC_004088.1	Protein Homology	CDS	4181359	4182441	.	-	0	ID=cds3730;Parent=gene3828;Dbxref=Genbank:WP_002209199.1;Name=WP_002209199.1;gbkey=CDS;product=lipoprotein;protein_id=WP_002209199.1;transl_table=11
NC_004088.1	RefSeq	gene	4182493	4182726	.	-	.	ID=gene3829;Name=Y_RS19215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19215;old_locus_tag=y3761
NC_004088.1	Protein Homology	CDS	4182493	4182726	.	-	0	ID=cds3731;Parent=gene3829;Dbxref=Genbank:WP_002209198.1;Name=WP_002209198.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209198.1;transl_table=11
NC_004088.1	RefSeq	gene	4182753	4182950	.	-	.	ID=gene3830;Name=Y_RS21775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21775
NC_004088.1	Protein Homology	CDS	4182753	4182950	.	-	0	ID=cds3732;Parent=gene3830;Dbxref=Genbank:WP_002215224.1;Name=WP_002215224.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215224.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4183348	4183516	.	+	.	ID=id463;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4183536	4184768	.	-	.	ID=gene3831;Name=Y_RS19225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19225;old_locus_tag=y3762
NC_004088.1	Protein Homology	CDS	4183536	4184768	.	-	0	ID=cds3733;Parent=gene3831;Dbxref=Genbank:WP_002209197.1;Name=WP_002209197.1;gbkey=CDS;product=O-antigen biosynthesis protein;protein_id=WP_002209197.1;transl_table=11
NC_004088.1	RefSeq	gene	4184816	4185979	.	-	.	ID=gene3832;Name=Y_RS19230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19230;old_locus_tag=y3763
NC_004088.1	Protein Homology	CDS	4184816	4185979	.	-	0	ID=cds3734;Parent=gene3832;Dbxref=Genbank:WP_002209196.1;Name=WP_002209196.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_002209196.1;transl_table=11
NC_004088.1	RefSeq	gene	4186325	4187917	.	-	.	ID=gene3833;Name=Y_RS19235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19235;old_locus_tag=y3764
NC_004088.1	Protein Homology	CDS	4186325	4187917	.	-	0	ID=cds3735;Parent=gene3833;Dbxref=Genbank:WP_002209194.1;Name=WP_002209194.1;gbkey=CDS;product=autoinducer 2 kinase LsrK;protein_id=WP_002209194.1;transl_table=11
NC_004088.1	RefSeq	gene	4188088	4189075	.	-	.	ID=gene3834;Name=Y_RS19240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS19240;pseudo=true
NC_004088.1	Protein Homology	CDS	4188088	4189075	.	-	0	ID=cds3736;Parent=gene3834;Note=regulates the transcription of lsr genes%3B involved in autoinducer 2 uptake%2C biofilm formation and stress responses;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transcriptional regulator LsrR;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	4189104	4189310	.	+	.	ID=gene3835;Name=Y_RS19245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19245
NC_004088.1	Protein Homology	CDS	4189104	4189310	.	+	0	ID=cds3737;Parent=gene3835;Dbxref=Genbank:WP_002221620.1;Name=WP_002221620.1;gbkey=CDS;product=membrane protein;protein_id=WP_002221620.1;transl_table=11
NC_004088.1	RefSeq	gene	4189420	4191003	.	+	.	ID=gene3836;Name=Y_RS19250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19250;old_locus_tag=y3769
NC_004088.1	Protein Homology	CDS	4189420	4191003	.	+	0	ID=cds3738;Parent=gene3836;Dbxref=Genbank:WP_002209192.1;Name=WP_002209192.1;Note=with LsrCDB is involved in the transport of autoindiuce 2;gbkey=CDS;product=autoinducer 2 import ATP-binding protein LsrA;protein_id=WP_002209192.1;transl_table=11
NC_004088.1	RefSeq	gene	4190997	4192052	.	+	.	ID=gene3837;Name=Y_RS19255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19255;old_locus_tag=y3770
NC_004088.1	Protein Homology	CDS	4190997	4192052	.	+	0	ID=cds3739;Parent=gene3837;Dbxref=Genbank:WP_002209191.1;Name=WP_002209191.1;Note=with LsrADB is involved in the transport of autoindiuce 2;gbkey=CDS;product=autoinducer 2 import system permease LsrC;protein_id=WP_002209191.1;transl_table=11
NC_004088.1	RefSeq	gene	4192049	4193050	.	+	.	ID=gene3838;Name=Y_RS19260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19260;old_locus_tag=y3771
NC_004088.1	Protein Homology	CDS	4192049	4193050	.	+	0	ID=cds3740;Parent=gene3838;Dbxref=Genbank:WP_002209190.1;Name=WP_002209190.1;Note=with IsrABC is involved with autoinducer 2 import;gbkey=CDS;product=autoinducer 2 import system permease LsrD;protein_id=WP_002209190.1;transl_table=11
NC_004088.1	RefSeq	gene	4193116	4194135	.	+	.	ID=gene3839;Name=Y_RS19265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19265;old_locus_tag=y3772
NC_004088.1	Protein Homology	CDS	4193116	4194135	.	+	0	ID=cds3741;Parent=gene3839;Dbxref=Genbank:WP_002209189.1;Name=WP_002209189.1;Note=with lsrACD is involved in the transport of autoinducer 2 into the cell;gbkey=CDS;product=autoinducer 2-binding protein LsrB;protein_id=WP_002209189.1;transl_table=11
NC_004088.1	RefSeq	gene	4194191	4195066	.	+	.	ID=gene3840;Name=Y_RS19270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19270;old_locus_tag=y3773
NC_004088.1	Protein Homology	CDS	4194191	4195066	.	+	0	ID=cds3742;Parent=gene3840;Dbxref=Genbank:WP_002209188.1;Name=WP_002209188.1;Note=involved in autoinducer 2 transport and processing;gbkey=CDS;product=aldolase;protein_id=WP_002209188.1;transl_table=11
NC_004088.1	RefSeq	gene	4195130	4195420	.	+	.	ID=gene3841;Name=Y_RS19275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19275;old_locus_tag=y3774
NC_004088.1	Protein Homology	CDS	4195130	4195420	.	+	0	ID=cds3743;Parent=gene3841;Dbxref=Genbank:WP_002209186.1;Name=WP_002209186.1;gbkey=CDS;product=autoinducer 2-degrading protein LsrG;protein_id=WP_002209186.1;transl_table=11
NC_004088.1	RefSeq	gene	4195721	4196212	.	+	.	ID=gene3842;Name=Y_RS19280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19280;old_locus_tag=y3775
NC_004088.1	Protein Homology	CDS	4195721	4196212	.	+	0	ID=cds3744;Parent=gene3842;Dbxref=Genbank:WP_002209184.1;Name=WP_002209184.1;gbkey=CDS;product=glycoprotein/receptor precursor;protein_id=WP_002209184.1;transl_table=11
NC_004088.1	RefSeq	gene	4196274	4198832	.	-	.	ID=gene3843;Name=Y_RS19285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19285;old_locus_tag=y3776
NC_004088.1	Protein Homology	CDS	4196274	4198832	.	-	0	ID=cds3745;Parent=gene3843;Dbxref=Genbank:WP_002228120.1;Name=WP_002228120.1;Note=Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein HPr%3B HPr transfers the phosphoryl group to subunit A%3B subunit IIA transfers a phosphoryl group to subunit IIB%3B subunit IIB transfers the phosphoryl group to the substrate%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system;gbkey=CDS;product=PTS fructose transporter subunit IIA;protein_id=WP_002228120.1;transl_table=11
NC_004088.1	RefSeq	gene	4199197	4200279	.	+	.	ID=gene3844;Name=Y_RS19290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19290;old_locus_tag=y3777
NC_004088.1	Protein Homology	CDS	4199197	4200279	.	+	0	ID=cds3746;Parent=gene3844;Dbxref=Genbank:WP_002209182.1;Name=WP_002209182.1;gbkey=CDS;product=PTS fructose transporter subunit IIC;protein_id=WP_002209182.1;transl_table=11
NC_004088.1	RefSeq	gene	4200620	4200940	.	+	.	ID=gene3845;Name=Y_RS19295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19295;old_locus_tag=y3778
NC_004088.1	Protein Homology	CDS	4200620	4200940	.	+	0	ID=cds3747;Parent=gene3845;Dbxref=Genbank:WP_002209181.1;Name=WP_002209181.1;Note=FrwB with FrwC%2C FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell%3B cytoplasmic protein that interacts with complex EIIA%3B contains the second phosphorylation site of the PTS;gbkey=CDS;product=PTS fructose transporter subunit IIB;protein_id=WP_002209181.1;transl_table=11
NC_004088.1	RefSeq	gene	4201033	4201377	.	+	.	ID=gene3846;Name=Y_RS19300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19300;old_locus_tag=y3780
NC_004088.1	Protein Homology	CDS	4201033	4201377	.	+	0	ID=cds3748;Parent=gene3846;Dbxref=Genbank:WP_002209180.1;Name=WP_002209180.1;Note=FrwD with FrwB%2C FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell%3B phosphorylated by EIIA%3B FrwB homolog;gbkey=CDS;product=PTS fructose transporter subunit IIB;protein_id=WP_002209180.1;transl_table=11
NC_004088.1	RefSeq	gene	4201370	4202245	.	-	.	ID=gene3847;Name=Y_RS19305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19305;old_locus_tag=y3781
NC_004088.1	Protein Homology	CDS	4201370	4202245	.	-	0	ID=cds3749;Parent=gene3847;Dbxref=Genbank:WP_002209179.1;Name=WP_002209179.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209179.1;transl_table=11
NC_004088.1	RefSeq	gene	4202247	4202783	.	-	.	ID=gene3848;Name=Y_RS19310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19310;old_locus_tag=y3782
NC_004088.1	Protein Homology	CDS	4202247	4202783	.	-	0	ID=cds3750;Parent=gene3848;Dbxref=Genbank:WP_002209178.1;Name=WP_002209178.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209178.1;transl_table=11
NC_004088.1	RefSeq	gene	4203489	4204685	.	+	.	ID=gene3849;Name=Y_RS19315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19315;old_locus_tag=y3783
NC_004088.1	Protein Homology	CDS	4203489	4204685	.	+	0	ID=cds3751;Parent=gene3849;Dbxref=Genbank:WP_002209177.1;Name=WP_002209177.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209177.1;transl_table=11
NC_004088.1	RefSeq	gene	4204696	4205742	.	+	.	ID=gene3850;Name=Y_RS19320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19320;old_locus_tag=y3784
NC_004088.1	Protein Homology	CDS	4204696	4205742	.	+	0	ID=cds3752;Parent=gene3850;Dbxref=Genbank:WP_002209176.1;Name=WP_002209176.1;gbkey=CDS;product=peptidase M48;protein_id=WP_002209176.1;transl_table=11
NC_004088.1	RefSeq	gene	4205751	4205876	.	+	.	ID=gene3851;Name=Y_RS19325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19325
NC_004088.1	Protein Homology	CDS	4205751	4205876	.	+	0	ID=cds3753;Parent=gene3851;Dbxref=Genbank:WP_002209175.1;Name=WP_002209175.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209175.1;transl_table=11
NC_004088.1	RefSeq	gene	4205888	4207042	.	-	.	ID=gene3852;Name=Y_RS19330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19330;old_locus_tag=y3785
NC_004088.1	Protein Homology	CDS	4205888	4207042	.	-	0	ID=cds3754;Parent=gene3852;Dbxref=Genbank:WP_002209174.1;Name=WP_002209174.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209174.1;transl_table=11
NC_004088.1	RefSeq	gene	4207039	4208427	.	-	.	ID=gene3853;Name=Y_RS19335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19335;old_locus_tag=y3786
NC_004088.1	Protein Homology	CDS	4207039	4208427	.	-	0	ID=cds3755;Parent=gene3853;Dbxref=Genbank:WP_002209173.1;Name=WP_002209173.1;gbkey=CDS;product=ATPase involved in DNA repair;protein_id=WP_002209173.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4208391	4208553	.	+	.	ID=id464;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4208533	4208628	.	-	.	ID=gene3854;Name=Y_RS19340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19340;old_locus_tag=y3787
NC_004088.1	Protein Homology	CDS	4208533	4208628	.	-	0	ID=cds3756;Parent=gene3854;Dbxref=Genbank:WP_002215302.1;Name=WP_002215302.1;gbkey=CDS;product=transposase;protein_id=WP_002215302.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4208568	4208730	.	+	.	ID=id465;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4208669	4208866	.	+	.	ID=gene3855;Name=Y_RS19345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19345;old_locus_tag=y3788
NC_004088.1	Protein Homology	CDS	4208669	4208866	.	+	0	ID=cds3757;Parent=gene3855;Dbxref=Genbank:WP_002209172.1;Name=WP_002209172.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209172.1;transl_table=11
NC_004088.1	RefSeq	gene	4209068	4209355	.	+	.	ID=gene3856;Name=Y_RS19350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19350;old_locus_tag=y3789
NC_004088.1	Protein Homology	CDS	4209068	4209355	.	+	0	ID=cds3758;Parent=gene3856;Dbxref=Genbank:WP_002215301.1;Name=WP_002215301.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215301.1;transl_table=11
NC_004088.1	RefSeq	gene	4209699	4211072	.	-	.	ID=gene3857;Name=Y_RS19355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19355;old_locus_tag=y3790
NC_004088.1	Protein Homology	CDS	4209699	4211072	.	-	0	ID=cds3759;Parent=gene3857;Dbxref=Genbank:WP_002209171.1;Name=WP_002209171.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209171.1;transl_table=11
NC_004088.1	RefSeq	gene	4211044	4211766	.	-	.	ID=gene3858;Name=Y_RS19360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19360;old_locus_tag=y3791
NC_004088.1	Protein Homology	CDS	4211044	4211766	.	-	0	ID=cds3760;Parent=gene3858;Dbxref=Genbank:WP_002209170.1;Name=WP_002209170.1;gbkey=CDS;product=histidine kinase;protein_id=WP_002209170.1;transl_table=11
NC_004088.1	RefSeq	gene	4211816	4213141	.	-	.	ID=gene3859;Name=Y_RS19365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19365;old_locus_tag=y3792
NC_004088.1	Protein Homology	CDS	4211816	4213141	.	-	0	ID=cds3761;Parent=gene3859;Dbxref=Genbank:WP_002209169.1;Name=WP_002209169.1;gbkey=CDS;product=restriction endonuclease subunit M;protein_id=WP_002209169.1;transl_table=11
NC_004088.1	RefSeq	gene	4213280	4213543	.	+	.	ID=gene3860;Name=Y_RS19370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19370;old_locus_tag=y3793
NC_004088.1	Protein Homology	CDS	4213280	4213543	.	+	0	ID=cds3762;Parent=gene3860;Dbxref=Genbank:WP_002209168.1;Name=WP_002209168.1;gbkey=CDS;product=transposase;protein_id=WP_002209168.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4213762	4213974	.	+	.	ID=id466;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4213868	4214098	.	-	.	ID=gene3861;Name=Y_RS19375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19375
NC_004088.1	Protein Homology	CDS	4213868	4214098	.	-	0	ID=cds3763;Parent=gene3861;Dbxref=Genbank:WP_002215297.1;Name=WP_002215297.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215297.1;transl_table=11
NC_004088.1	RefSeq	gene	4214165	4215481	.	-	.	ID=gene3862;Name=Y_RS19380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19380;old_locus_tag=y3796
NC_004088.1	Protein Homology	CDS	4214165	4215481	.	-	0	ID=cds3764;Parent=gene3862;Dbxref=Genbank:WP_002209167.1;Name=WP_002209167.1;gbkey=CDS;product=mcrBC 5-methylcytosine restriction system component family protein;protein_id=WP_002209167.1;transl_table=11
NC_004088.1	RefSeq	gene	4215478	4217541	.	-	.	ID=gene3863;Name=Y_RS19385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19385;old_locus_tag=y3797
NC_004088.1	Protein Homology	CDS	4215478	4217541	.	-	0	ID=cds3765;Parent=gene3863;Dbxref=Genbank:WP_002209166.1;Name=WP_002209166.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_002209166.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4217586	4219544	.	+	.	ID=id467;gbkey=repeat_region
NC_004088.1	RefSeq	region	4217589	4219542	.	+	.	ID=id468;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4217675	4218697	.	+	.	ID=gene3864;Name=Y_RS19390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19390;old_locus_tag=y3798
NC_004088.1	Protein Homology	CDS	4217675	4218697	.	+	0	ID=cds3766;Parent=gene3864;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	4218697	4219476	.	+	.	ID=gene3865;Name=Y_RS19395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19395;old_locus_tag=y3799
NC_004088.1	Protein Homology	CDS	4218697	4219476	.	+	0	ID=cds3767;Parent=gene3865;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	4219550	4219987	.	-	.	ID=gene3866;Name=Y_RS19400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19400;old_locus_tag=y3800
NC_004088.1	Protein Homology	CDS	4219550	4219987	.	-	0	ID=cds3768;Parent=gene3866;Dbxref=Genbank:WP_002209009.1;Name=WP_002209009.1;Note=hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr)%3B possible defense mechanism against a harmful effect of D-tyrosine;gbkey=CDS;product=D-aminoacyl-tRNA deacylase;protein_id=WP_002209009.1;transl_table=11
NC_004088.1	RefSeq	gene	4219994	4220878	.	-	.	ID=gene3867;Name=Y_RS19405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19405;old_locus_tag=y3801
NC_004088.1	Protein Homology	CDS	4219994	4220878	.	-	0	ID=cds3769;Parent=gene3867;Dbxref=Genbank:WP_002209010.1;Name=WP_002209010.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209010.1;transl_table=11
NC_004088.1	RefSeq	gene	4220975	4221565	.	-	.	ID=gene3868;Name=Y_RS19410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19410;old_locus_tag=y3802
NC_004088.1	Protein Homology	CDS	4220975	4221565	.	-	0	ID=cds3770;Parent=gene3868;Dbxref=Genbank:WP_002209011.1;Name=WP_002209011.1;gbkey=CDS;product=phosphatase;protein_id=WP_002209011.1;transl_table=11
NC_004088.1	RefSeq	gene	4221887	4223710	.	-	.	ID=gene3869;Name=Y_RS19415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19415;old_locus_tag=y3803
NC_004088.1	Protein Homology	CDS	4221887	4223710	.	-	0	ID=cds3771;Parent=gene3869;Dbxref=Genbank:WP_002217380.1;Name=WP_002217380.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_002217380.1;transl_table=11
NC_004088.1	RefSeq	gene	4223955	4224086	.	+	.	ID=gene3870;Name=Y_RS19420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19420
NC_004088.1	Protein Homology	CDS	4223955	4224086	.	+	0	ID=cds3772;Parent=gene3870;Dbxref=Genbank:WP_002422228.1;Name=WP_002422228.1;gbkey=CDS;product=membrane protein;protein_id=WP_002422228.1;transl_table=11
NC_004088.1	RefSeq	gene	4224272	4225681	.	+	.	ID=gene3871;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=Y_RS19425;old_locus_tag=y3804
NC_004088.1	Protein Homology	CDS	4224272	4225681	.	+	0	ID=cds3773;Parent=gene3871;Dbxref=Genbank:WP_002213150.1;Name=WP_002213150.1;Note=forms a homododecamer%3B forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate%3B also functions in the assimilation of ammonia%3B highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues%3B addition of adenylyl groups results in inactivation of the enzyme;gbkey=CDS;gene=glnA;product=glutamine synthetase;protein_id=WP_002213150.1;transl_table=11
NC_004088.1	RefSeq	gene	4225934	4226983	.	+	.	ID=gene3872;Name=glnL;gbkey=Gene;gene=glnL;gene_biotype=protein_coding;locus_tag=Y_RS19430;old_locus_tag=y3805
NC_004088.1	Protein Homology	CDS	4225934	4226983	.	+	0	ID=cds3774;Parent=gene3872;Dbxref=Genbank:WP_002213151.1;Name=WP_002213151.1;Note=sensory histidine kinase in two-component regulatory system with GlnG%3B acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation;gbkey=CDS;gene=glnL;product=PAS domain-containing two-component system sensor histidine kinase;protein_id=WP_002213151.1;transl_table=11
NC_004088.1	RefSeq	gene	4226991	4228403	.	+	.	ID=gene3873;Name=glnG;gbkey=Gene;gene=glnG;gene_biotype=protein_coding;locus_tag=Y_RS19435;old_locus_tag=y3806
NC_004088.1	Protein Homology	CDS	4226991	4228403	.	+	0	ID=cds3775;Parent=gene3873;Dbxref=Genbank:WP_002213152.1;Name=WP_002213152.1;Note=response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes%3B interacts with sigma-54;gbkey=CDS;gene=glnG;product=nitrogen regulation protein NR(I);protein_id=WP_002213152.1;transl_table=11
NC_004088.1	RefSeq	gene	4228457	4229830	.	-	.	ID=gene3874;Name=Y_RS19440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19440;old_locus_tag=y3807
NC_004088.1	Protein Homology	CDS	4228457	4229830	.	-	0	ID=cds3776;Parent=gene3874;Dbxref=Genbank:WP_002213155.1;Name=WP_002213155.1;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_002213155.1;transl_table=11
NC_004088.1	RefSeq	gene	4230013	4230579	.	-	.	ID=gene3875;Name=Y_RS19445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19445;old_locus_tag=y3808
NC_004088.1	Protein Homology	CDS	4230013	4230579	.	-	0	ID=cds3777;Parent=gene3875;Dbxref=Genbank:WP_002213158.1;Name=WP_002213158.1;gbkey=CDS;product=der GTPase-activating protein YihI;protein_id=WP_002213158.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	4231146	4231164	.	-	.	ID=id469;Dbxref=CollecTF:EXPSITE_00000d60;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y3808;gbkey=protein_bind
NC_004088.1	RefSeq	gene	4231324	4231974	.	+	.	ID=gene3876;Name=Y_RS19450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19450;old_locus_tag=y3809
NC_004088.1	Protein Homology	CDS	4231324	4231974	.	+	0	ID=cds3778;Parent=gene3876;Dbxref=Genbank:WP_002213160.1;Name=WP_002213160.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_002213160.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4232115	4232834	.	+	.	ID=id470;gbkey=repeat_region
NC_004088.1	RefSeq	region	4232120	4232829	.	-	.	ID=id471;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4232226	4232684	.	-	.	ID=gene3877;Name=Y_RS19455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19455;old_locus_tag=y3810
NC_004088.1	Protein Homology	CDS	4232226	4232684	.	-	0	ID=cds3779;Parent=gene3877;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	4232674	4232829	.	-	.	ID=gene3878;Name=Y_RS19460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19460
NC_004088.1	Protein Homology	CDS	4232674	4232829	.	-	0	ID=cds3780;Parent=gene3878;Dbxref=Genbank:WP_002213757.1;Name=WP_002213757.1;gbkey=CDS;product=invasin;protein_id=WP_002213757.1;transl_table=11
NC_004088.1	RefSeq	gene	4232828	4232934	.	-	.	ID=gene3879;Name=Y_RS21795;gbkey=Gene;gene_biotype=misc_RNA;locus_tag=Y_RS21795
NC_004088.1	RefSeq	transcript	4232828	4232934	.	-	.	ID=rna91;Parent=gene3879;gbkey=misc_RNA;product=spot 42 RNA%2C inhibition of DNA synthesis
NC_004088.1	RefSeq	exon	4232828	4232934	.	-	.	ID=id472;Parent=rna91;gbkey=misc_RNA;product=spot 42 RNA%2C inhibition of DNA synthesis
NC_004088.1	RefSeq	gene	4233093	4235891	.	-	.	ID=gene3880;Name=Y_RS19465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19465;old_locus_tag=y3811
NC_004088.1	Protein Homology	CDS	4233093	4235891	.	-	0	ID=cds3781;Parent=gene3880;Dbxref=Genbank:WP_002213164.1;Name=WP_002213164.1;Note=has 3'-5' exonuclease%2C 5'-3' exonuclease and 5'-3'polymerase activities%2C primarily functions to fill gaps during DNA replication and repair;gbkey=CDS;product=DNA polymerase I;protein_id=WP_002213164.1;transl_table=11
NC_004088.1	RefSeq	gene	4236383	4237006	.	-	.	ID=gene3881;Name=Y_RS19470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19470;old_locus_tag=y3812
NC_004088.1	Protein Homology	CDS	4236383	4237006	.	-	0	ID=cds3782;Parent=gene3881;Dbxref=Genbank:WP_002213168.1;Name=WP_002213168.1;gbkey=CDS;product=thiol:disulfide interchange protein DsbA;protein_id=WP_002213168.1;transl_table=11
NC_004088.1	RefSeq	gene	4237034	4238020	.	-	.	ID=gene3882;Name=Y_RS19475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19475;old_locus_tag=y3813
NC_004088.1	Protein Homology	CDS	4237034	4238020	.	-	0	ID=cds3783;Parent=gene3882;Dbxref=Genbank:WP_002213169.1;Name=WP_002213169.1;Note=catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro%3B specific substrate in vivo has not been identified yet%3B plays a role in long-term cell survival and expression of surface appendages;gbkey=CDS;product=serine/threonine protein kinase;protein_id=WP_002213169.1;transl_table=11
NC_004088.1	RefSeq	gene	4238111	4238380	.	-	.	ID=gene3883;Name=Y_RS19480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19480;old_locus_tag=y3814
NC_004088.1	Protein Homology	CDS	4238111	4238380	.	-	0	ID=cds3784;Parent=gene3883;Dbxref=Genbank:WP_002213170.1;Name=WP_002213170.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213170.1;transl_table=11
NC_004088.1	RefSeq	gene	4238534	4239121	.	+	.	ID=gene3884;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=Y_RS19485;old_locus_tag=y3815
NC_004088.1	Protein Homology	CDS	4238534	4239121	.	+	0	ID=cds3785;Parent=gene3884;Dbxref=Genbank:WP_002213171.1;Name=WP_002213171.1;Note=in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis;gbkey=CDS;gene=mobA;product=molybdenum cofactor guanylyltransferase;protein_id=WP_002213171.1;transl_table=11
NC_004088.1	RefSeq	gene	4239121	4239651	.	+	.	ID=gene3885;Name=Y_RS19490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19490;old_locus_tag=y3816
NC_004088.1	Protein Homology	CDS	4239121	4239651	.	+	0	ID=cds3786;Parent=gene3885;Dbxref=Genbank:WP_002217538.1;Name=WP_002217538.1;Note=in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway;gbkey=CDS;product=molybdopterin-guanine dinucleotide biosynthesis protein B;protein_id=WP_002217538.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4239672	4240991	.	+	.	ID=id473;gbkey=repeat_region
NC_004088.1	RefSeq	region	4239674	4240988	.	-	.	ID=id474;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4239709	4240917	.	-	.	ID=gene3886;Name=Y_RS19495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19495;old_locus_tag=y3817
NC_004088.1	Protein Homology	CDS	4239709	4240917	.	-	0	ID=cds3787;Parent=gene3886;Dbxref=Genbank:WP_002220999.1;Name=WP_002220999.1;gbkey=CDS;product=transposase;protein_id=WP_002220999.1;transl_table=11
NC_004088.1	RefSeq	gene	4241039	4241269	.	-	.	ID=gene3887;Name=Y_RS21780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21780
NC_004088.1	Protein Homology	CDS	4241039	4241269	.	-	0	ID=cds3788;Parent=gene3887;Dbxref=Genbank:WP_025473721.1;Name=WP_025473721.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_025473721.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4241168	4246927	.	+	.	ID=id475;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4241420	4241535	.	-	.	ID=gene3888;Name=Y_RS19500;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS19500;old_locus_tag=yr022
NC_004088.1	cmsearch	rRNA	4241420	4241535	.	-	.	ID=rna92;Parent=gene3888;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	cmsearch	exon	4241420	4241535	.	-	.	ID=id476;Parent=rna92;gbkey=rRNA;product=5S ribosomal RNA
NC_004088.1	RefSeq	gene	4241627	4244560	.	-	.	ID=gene3889;Name=Y_RS19505;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS19505;old_locus_tag=yr023
NC_004088.1	RefSeq	rRNA	4241627	4244560	.	-	.	ID=rna93;Parent=gene3889;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	exon	4241627	4244560	.	-	.	ID=id477;Parent=rna93;gbkey=rRNA;product=23S ribosomal RNA
NC_004088.1	RefSeq	gene	4244804	4244879	.	-	.	ID=gene3890;Name=Y_RS19510;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS19510;old_locus_tag=yt071
NC_004088.1	tRNAscan-SE	tRNA	4244804	4244879	.	-	.	ID=rna94;Parent=gene3890;anticodon=(pos:complement(4244843..4244845));gbkey=tRNA;product=tRNA-Glu
NC_004088.1	tRNAscan-SE	exon	4244804	4244879	.	-	.	ID=id478;Parent=rna94;anticodon=(pos:complement(4244843..4244845));gbkey=tRNA;product=tRNA-Glu
NC_004088.1	RefSeq	gene	4245013	4246561	.	-	.	ID=gene3891;Name=Y_RS19515;gbkey=Gene;gene_biotype=rRNA;locus_tag=Y_RS19515;old_locus_tag=yr024
NC_004088.1	RefSeq	rRNA	4245013	4246561	.	-	.	ID=rna95;Parent=gene3891;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	exon	4245013	4246561	.	-	.	ID=id479;Parent=rna95;gbkey=rRNA;product=16S ribosomal RNA
NC_004088.1	RefSeq	repeat_region	4247126	4249083	.	+	.	ID=id480;gbkey=repeat_region
NC_004088.1	RefSeq	region	4247128	4249081	.	+	.	ID=id481;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4247214	4248236	.	+	.	ID=gene3892;Name=Y_RS19525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19525;old_locus_tag=y3818
NC_004088.1	Protein Homology	CDS	4247214	4248236	.	+	0	ID=cds3789;Parent=gene3892;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	4248236	4249015	.	+	.	ID=gene3893;Name=Y_RS19530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19530;old_locus_tag=y3819
NC_004088.1	Protein Homology	CDS	4248236	4249015	.	+	0	ID=cds3790;Parent=gene3893;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	4249140	4249820	.	+	.	ID=gene3894;Name=Y_RS19535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19535;old_locus_tag=y3820
NC_004088.1	Protein Homology	CDS	4249140	4249820	.	+	0	ID=cds3791;Parent=gene3894;Dbxref=Genbank:WP_002361295.1;Name=WP_002361295.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_002361295.1;transl_table=11
NC_004088.1	RefSeq	gene	4249915	4251246	.	+	.	ID=gene3895;Name=Y_RS19540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19540;old_locus_tag=y3821
NC_004088.1	Protein Homology	CDS	4249915	4251246	.	+	0	ID=cds3792;Parent=gene3895;Dbxref=Genbank:WP_002209567.1;Name=WP_002209567.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209567.1;transl_table=11
NC_004088.1	RefSeq	gene	4251363	4251439	.	+	.	ID=gene3896;Name=Y_RS19545;gbkey=Gene;gene_biotype=tRNA;locus_tag=Y_RS19545;old_locus_tag=yt072
NC_004088.1	tRNAscan-SE	tRNA	4251363	4251439	.	+	.	ID=rna96;Parent=gene3896;anticodon=(pos:4251397..4251399);gbkey=tRNA;product=tRNA-Pro
NC_004088.1	tRNAscan-SE	exon	4251363	4251439	.	+	.	ID=id482;Parent=rna96;anticodon=(pos:4251397..4251399);gbkey=tRNA;product=tRNA-Pro
NC_004088.1	RefSeq	gene	4251752	4253143	.	+	.	ID=gene3897;Name=Y_RS19550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19550;old_locus_tag=y3823
NC_004088.1	Protein Homology	CDS	4251752	4253143	.	+	0	ID=cds3793;Parent=gene3897;Dbxref=Genbank:WP_002224153.1;Name=WP_002224153.1;gbkey=CDS;product=hemagglutinin;protein_id=WP_002224153.1;transl_table=11
NC_004088.1	RefSeq	gene	4253345	4255015	.	+	.	ID=gene3898;Name=Y_RS19555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19555;old_locus_tag=y3824
NC_004088.1	Protein Homology	CDS	4253345	4255015	.	+	0	ID=cds3794;Parent=gene3898;Dbxref=Genbank:WP_002209565.1;Name=WP_002209565.1;gbkey=CDS;product=hemolysin secretion protein ShlB;protein_id=WP_002209565.1;transl_table=11
NC_004088.1	RefSeq	gene	4255075	4255281	.	+	.	ID=gene3899;Name=Y_RS19560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19560
NC_004088.1	Protein Homology	CDS	4255075	4255281	.	+	0	ID=cds3795;Parent=gene3899;Dbxref=Genbank:WP_002217329.1;Name=WP_002217329.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217329.1;transl_table=11
NC_004088.1	RefSeq	gene	4255684	4257291	.	+	.	ID=gene3900;Name=Y_RS19565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19565;old_locus_tag=y3825
NC_004088.1	Protein Homology	CDS	4255684	4257291	.	+	0	ID=cds3796;Parent=gene3900;Dbxref=Genbank:WP_002209564.1;Name=WP_002209564.1;Note=DppABCDF is involved in the transport of dipeptides%3B also binds heme and mediates chemotaxis to dipeptides;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_002209564.1;transl_table=11
NC_004088.1	RefSeq	gene	4257574	4258521	.	+	.	ID=gene3901;Name=Y_RS19570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19570;old_locus_tag=y3826
NC_004088.1	Protein Homology	CDS	4257574	4258521	.	+	0	ID=cds3797;Parent=gene3901;Dbxref=Genbank:WP_002217330.1;Name=WP_002217330.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_002217330.1;transl_table=11
NC_004088.1	RefSeq	gene	4258603	4259505	.	+	.	ID=gene3902;Name=Y_RS19575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19575;old_locus_tag=y3828
NC_004088.1	Protein Homology	CDS	4258603	4259505	.	+	0	ID=cds3798;Parent=gene3902;Dbxref=Genbank:WP_002209563.1;Name=WP_002209563.1;gbkey=CDS;product=peptide ABC transporter;protein_id=WP_002209563.1;transl_table=11
NC_004088.1	RefSeq	gene	4259519	4260499	.	+	.	ID=gene3903;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=Y_RS19580;old_locus_tag=y3829
NC_004088.1	Protein Homology	CDS	4259519	4260499	.	+	0	ID=cds3799;Parent=gene3903;Dbxref=Genbank:WP_002209562.1;Name=WP_002209562.1;Note=DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF;gbkey=CDS;gene=dppD;product=peptide ABC transporter ATP-binding protein;protein_id=WP_002209562.1;transl_table=11
NC_004088.1	RefSeq	gene	4260565	4261572	.	+	.	ID=gene3904;Name=dppF;gbkey=Gene;gene=dppF;gene_biotype=protein_coding;locus_tag=Y_RS19585;old_locus_tag=y3830
NC_004088.1	Protein Homology	CDS	4260565	4261572	.	+	0	ID=cds3800;Parent=gene3904;Dbxref=Genbank:WP_002228160.1;Name=WP_002228160.1;Note=Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides;gbkey=CDS;gene=dppF;product=peptide ABC transporter ATP-binding protein;protein_id=WP_002228160.1;transl_table=11
NC_004088.1	RefSeq	gene	4261891	4262790	.	+	.	ID=gene3905;Name=Y_RS19590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19590;old_locus_tag=y3831
NC_004088.1	Protein Homology	CDS	4261891	4262790	.	+	0	ID=cds3801;Parent=gene3905;Dbxref=Genbank:WP_002214765.1;Name=WP_002214765.1;Note=catalyzes the hydrolysis of 1%2C4-beta-D-glucosidic linkages in cellulose%2C lichenin and cereal beta-D-glucans;gbkey=CDS;product=endonuclease III;protein_id=WP_002214765.1;transl_table=11
NC_004088.1	RefSeq	gene	4263137	4265119	.	+	.	ID=gene3906;Name=Y_RS19595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19595;old_locus_tag=y3832
NC_004088.1	Protein Homology	CDS	4263137	4265119	.	+	0	ID=cds3802;Parent=gene3906;Dbxref=Genbank:WP_002214767.1;Name=WP_002214767.1;Note=HmsP in Yersinia pestis plays a role in invasion of epithelial cells%3B the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation%3B inner membrane protein;gbkey=CDS;product=biofilm formation regulator HmsP;protein_id=WP_002214767.1;transl_table=11
NC_004088.1	RefSeq	gene	4265759	4266463	.	+	.	ID=gene3907;Name=Y_RS19600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19600;old_locus_tag=y3833
NC_004088.1	Protein Homology	CDS	4265759	4266463	.	+	0	ID=cds3803;Parent=gene3907;Dbxref=Genbank:WP_002209559.1;Name=WP_002209559.1;gbkey=CDS;product=porin;protein_id=WP_002209559.1;transl_table=11
NC_004088.1	RefSeq	gene	4266709	4268427	.	+	.	ID=gene3908;Name=Y_RS19605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19605;old_locus_tag=y3834
NC_004088.1	Protein Homology	CDS	4266709	4268427	.	+	0	ID=cds3804;Parent=gene3908;Dbxref=Genbank:WP_002209555.1;Name=WP_002209555.1;gbkey=CDS;product=pectate lyase;protein_id=WP_002209555.1;transl_table=11
NC_004088.1	RefSeq	gene	4268552	4269031	.	+	.	ID=gene3909;Name=Y_RS19610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19610;old_locus_tag=y3835
NC_004088.1	Protein Homology	CDS	4268552	4269031	.	+	0	ID=cds3805;Parent=gene3909;Dbxref=Genbank:WP_002209554.1;Name=WP_002209554.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209554.1;transl_table=11
NC_004088.1	RefSeq	gene	4269486	4270775	.	+	.	ID=gene3910;Name=Y_RS19615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19615;old_locus_tag=y3836
NC_004088.1	Protein Homology	CDS	4269486	4270775	.	+	0	ID=cds3806;Parent=gene3910;Dbxref=Genbank:WP_002209553.1;Name=WP_002209553.1;Note=involved in the transport of C4-dicarboxylates across the membrane;gbkey=CDS;product=C4-dicarboxylate transporter;protein_id=WP_002209553.1;transl_table=11
NC_004088.1	RefSeq	gene	4271140	4272639	.	+	.	ID=gene3911;Name=Y_RS19620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19620;old_locus_tag=y3837
NC_004088.1	Protein Homology	CDS	4271140	4272639	.	+	0	ID=cds3807;Parent=gene3911;Dbxref=Genbank:WP_002209550.1;Name=WP_002209550.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209550.1;transl_table=11
NC_004088.1	RefSeq	gene	4272803	4273747	.	-	.	ID=gene3912;Name=Y_RS19625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19625;old_locus_tag=y3838
NC_004088.1	Protein Homology	CDS	4272803	4273747	.	-	0	ID=cds3808;Parent=gene3912;Dbxref=Genbank:WP_002209549.1;Name=WP_002209549.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate-6-phosphate from 2-dehydro-3-deoxy-D-gluconate;gbkey=CDS;product=2-dehydro-3-deoxygluconokinase;protein_id=WP_002209549.1;transl_table=11
NC_004088.1	RefSeq	gene	4274026	4274226	.	-	.	ID=gene3913;Name=Y_RS19630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19630
NC_004088.1	Protein Homology	CDS	4274026	4274226	.	-	0	ID=cds3809;Parent=gene3913;Dbxref=Genbank:WP_002209548.1;Name=WP_002209548.1;gbkey=CDS;product=tautomerase;protein_id=WP_002209548.1;transl_table=11
NC_004088.1	RefSeq	gene	4274445	4275290	.	+	.	ID=gene3914;Name=Y_RS19635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19635;old_locus_tag=y3841
NC_004088.1	Protein Homology	CDS	4274445	4275290	.	+	0	ID=cds3810;Parent=gene3914;Dbxref=Genbank:WP_002209547.1;Name=WP_002209547.1;Note=in Escherichia coli this protein is involved in flagellar function;gbkey=CDS;product=cyclic di-GMP phosphodiesterase;protein_id=WP_002209547.1;transl_table=11
NC_004088.1	RefSeq	gene	4275595	4277811	.	+	.	ID=gene3915;Name=Y_RS19640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19640;old_locus_tag=y3842
NC_004088.1	Protein Homology	CDS	4275595	4277811	.	+	0	ID=cds3811;Parent=gene3915;Dbxref=Genbank:WP_002228712.1;Name=WP_002228712.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228712.1;transl_table=11
NC_004088.1	RefSeq	gene	4277788	4278585	.	-	.	ID=gene3916;Name=Y_RS19645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19645;old_locus_tag=y3843
NC_004088.1	Protein Homology	CDS	4277788	4278585	.	-	0	ID=cds3812;Parent=gene3916;Dbxref=Genbank:WP_002209546.1;Name=WP_002209546.1;gbkey=CDS;product=CDP-diacylglycerol pyrophosphatase;protein_id=WP_002209546.1;transl_table=11
NC_004088.1	RefSeq	gene	4278589	4279671	.	-	.	ID=gene3917;Name=Y_RS19650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19650;old_locus_tag=y3844
NC_004088.1	Protein Homology	CDS	4278589	4279671	.	-	0	ID=cds3813;Parent=gene3917;Dbxref=Genbank:WP_002209545.1;Name=WP_002209545.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209545.1;transl_table=11
NC_004088.1	RefSeq	gene	4280349	4283561	.	+	.	ID=gene3918;Name=Y_RS19655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19655;old_locus_tag=y3845
NC_004088.1	Protein Homology	CDS	4280349	4283561	.	+	0	ID=cds3814;Parent=gene3918;Dbxref=Genbank:WP_002214773.1;Name=WP_002214773.1;gbkey=CDS;product=autotransporter;protein_id=WP_002214773.1;transl_table=11
NC_004088.1	RefSeq	gene	4283739	4284518	.	+	.	ID=gene3919;Name=Y_RS19660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19660;old_locus_tag=y3846
NC_004088.1	Protein Homology	CDS	4283739	4284518	.	+	0	ID=cds3815;Parent=gene3919;Dbxref=Genbank:WP_002209540.1;Name=WP_002209540.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209540.1;transl_table=11
NC_004088.1	RefSeq	gene	4284520	4285017	.	+	.	ID=gene3920;Name=Y_RS19665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19665;old_locus_tag=y3847
NC_004088.1	Protein Homology	CDS	4284520	4285017	.	+	0	ID=cds3816;Parent=gene3920;Dbxref=Genbank:WP_002209539.1;Name=WP_002209539.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209539.1;transl_table=11
NC_004088.1	RefSeq	gene	4285085	4285591	.	+	.	ID=gene3921;Name=Y_RS19670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19670;old_locus_tag=y3848
NC_004088.1	Protein Homology	CDS	4285085	4285591	.	+	0	ID=cds3817;Parent=gene3921;Dbxref=Genbank:WP_002209538.1;Name=WP_002209538.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209538.1;transl_table=11
NC_004088.1	RefSeq	gene	4285837	4286973	.	-	.	ID=gene3922;Name=Y_RS19675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19675;old_locus_tag=y3849
NC_004088.1	Protein Homology	CDS	4285837	4286973	.	-	0	ID=cds3818;Parent=gene3922;Dbxref=Genbank:WP_002209537.1;Name=WP_002209537.1;gbkey=CDS;product=glycerate kinase;protein_id=WP_002209537.1;transl_table=11
NC_004088.1	RefSeq	gene	4286984	4288252	.	-	.	ID=gene3923;Name=Y_RS19680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19680;old_locus_tag=y3850
NC_004088.1	Protein Homology	CDS	4286984	4288252	.	-	0	ID=cds3819;Parent=gene3923;Dbxref=Genbank:WP_002209536.1;Name=WP_002209536.1;gbkey=CDS;product=gluconate:proton symporter;protein_id=WP_002209536.1;transl_table=11
NC_004088.1	RefSeq	gene	4288430	4289557	.	-	.	ID=gene3924;Name=Y_RS19685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19685;old_locus_tag=y3851
NC_004088.1	Protein Homology	CDS	4288430	4289557	.	-	0	ID=cds3820;Parent=gene3924;Dbxref=Genbank:WP_002209535.1;Name=WP_002209535.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209535.1;transl_table=11
NC_004088.1	RefSeq	gene	4289749	4291101	.	-	.	ID=gene3925;Name=Y_RS19690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19690;old_locus_tag=y3852
NC_004088.1	Protein Homology	CDS	4289749	4291101	.	-	0	ID=cds3821;Parent=gene3925;Dbxref=Genbank:WP_002209534.1;Name=WP_002209534.1;Note=catalyzes the reduction of 2 glutathione to glutathione disulfide%3B maintains high levels of reduced glutathione in the cytosol%3B involved in redox regulation and oxidative defense;gbkey=CDS;product=glutathione reductase;protein_id=WP_002209534.1;transl_table=11
NC_004088.1	RefSeq	gene	4291251	4292093	.	-	.	ID=gene3926;Name=Y_RS19695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19695;old_locus_tag=y3853
NC_004088.1	Protein Homology	CDS	4291251	4292093	.	-	0	ID=cds3822;Parent=gene3926;Dbxref=Genbank:WP_002209533.1;Name=WP_002209533.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209533.1;transl_table=11
NC_004088.1	RefSeq	gene	4292422	4294464	.	+	.	ID=gene3927;Name=Y_RS19700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19700;old_locus_tag=y3855
NC_004088.1	Protein Homology	CDS	4292422	4294464	.	+	0	ID=cds3823;Parent=gene3927;Dbxref=Genbank:WP_002209531.1;Name=WP_002209531.1;gbkey=CDS;product=oligopeptidase A;protein_id=WP_002209531.1;transl_table=11
NC_004088.1	RefSeq	gene	4294468	4295238	.	+	.	ID=gene3928;Name=Y_RS19705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19705;old_locus_tag=y3856
NC_004088.1	Protein Homology	CDS	4294468	4295238	.	+	0	ID=cds3824;Parent=gene3928;Dbxref=Genbank:WP_002215483.1;Name=WP_002215483.1;Note=predicted SAM-dependent methyltransferase;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase J;protein_id=WP_002215483.1;transl_table=11
NC_004088.1	RefSeq	gene	4295303	4296637	.	-	.	ID=gene3929;Name=Y_RS19710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19710;old_locus_tag=y3857
NC_004088.1	Protein Homology	CDS	4295303	4296637	.	-	0	ID=cds3825;Parent=gene3929;Dbxref=Genbank:WP_002209530.1;Name=WP_002209530.1;gbkey=CDS;product=peptidase M10;protein_id=WP_002209530.1;transl_table=11
NC_004088.1	RefSeq	gene	4296885	4298228	.	-	.	ID=gene3930;Name=Y_RS19715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19715;old_locus_tag=y3858
NC_004088.1	Protein Homology	CDS	4296885	4298228	.	-	0	ID=cds3826;Parent=gene3930;Dbxref=Genbank:WP_002209529.1;Name=WP_002209529.1;Note=converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer;gbkey=CDS;product=glutamate dehydrogenase;protein_id=WP_002209529.1;transl_table=11
NC_004088.1	RefSeq	gene	4298475	4298921	.	-	.	ID=gene3931;Name=Y_RS19720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19720;old_locus_tag=y3859
NC_004088.1	Protein Homology	CDS	4298475	4298921	.	-	0	ID=cds3827;Parent=gene3931;Dbxref=Genbank:WP_002209528.1;Name=WP_002209528.1;Note=involved in resistance to DNA-damaging agents;gbkey=CDS;product=universal stress protein A;protein_id=WP_002209528.1;transl_table=11
NC_004088.1	RefSeq	gene	4299629	4299964	.	+	.	ID=gene3932;Name=Y_RS19725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19725;old_locus_tag=y3860
NC_004088.1	Protein Homology	CDS	4299629	4299964	.	+	0	ID=cds3828;Parent=gene3932;Dbxref=Genbank:WP_002209527.1;Name=WP_002209527.1;Note=ppGpp-dependent%2C membrane associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress;gbkey=CDS;product=universal stress protein B;protein_id=WP_002209527.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4299987	4300711	.	+	.	ID=id483;gbkey=repeat_region
NC_004088.1	RefSeq	region	4299991	4300700	.	-	.	ID=id484;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4300097	4300555	.	-	.	ID=gene3933;Name=Y_RS19730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19730;old_locus_tag=y3861
NC_004088.1	Protein Homology	CDS	4300097	4300555	.	-	0	ID=cds3829;Parent=gene3933;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004088.1	RefSeq	gene	4300545	4300715	.	-	.	ID=gene3934;Name=Y_RS19735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19735
NC_004088.1	Protein Homology	CDS	4300545	4300715	.	-	0	ID=cds3830;Parent=gene3934;Dbxref=Genbank:WP_025470767.1;Name=WP_025470767.1;gbkey=CDS;product=transposase;protein_id=WP_025470767.1;transl_table=11
NC_004088.1	RefSeq	gene	4300821	4302317	.	-	.	ID=gene3935;Name=Y_RS19740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19740;old_locus_tag=y3862
NC_004088.1	Protein Homology	CDS	4300821	4302317	.	-	0	ID=cds3831;Parent=gene3935;Dbxref=Genbank:WP_002209526.1;Name=WP_002209526.1;Note=involved in the transport of inorganic phosphate;gbkey=CDS;product=phosphate transporter PitA;protein_id=WP_002209526.1;transl_table=11
NC_004088.1	RefSeq	gene	4302628	4303824	.	+	.	ID=gene3936;Name=Y_RS19745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19745;old_locus_tag=y3863
NC_004088.1	Protein Homology	CDS	4302628	4303824	.	+	0	ID=cds3832;Parent=gene3936;Dbxref=Genbank:WP_002215486.1;Name=WP_002215486.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215486.1;transl_table=11
NC_004088.1	RefSeq	gene	4303960	4306515	.	-	.	ID=gene3937;Name=Y_RS19750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19750;old_locus_tag=y3864
NC_004088.1	Protein Homology	CDS	4303960	4306515	.	-	0	ID=cds3833;Parent=gene3937;Dbxref=Genbank:WP_002209524.1;Name=WP_002209524.1;gbkey=CDS;product=histidine kinase;protein_id=WP_002209524.1;transl_table=11
NC_004088.1	RefSeq	gene	4306704	4308227	.	+	.	ID=gene3938;Name=Y_RS19755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19755;old_locus_tag=y3865
NC_004088.1	Protein Homology	CDS	4306704	4308227	.	+	0	ID=cds3834;Parent=gene3938;Dbxref=Genbank:WP_002209523.1;Name=WP_002209523.1;Note=with RbsBCD acts to import ribose into the cell%3B RbsA contains 2 ATP-binding domain;gbkey=CDS;product=ribose import ATP-binding protein RbsA;protein_id=WP_002209523.1;transl_table=11
NC_004088.1	RefSeq	gene	4308220	4309212	.	+	.	ID=gene3939;Name=Y_RS19760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19760;old_locus_tag=y3866
NC_004088.1	Protein Homology	CDS	4308220	4309212	.	+	0	ID=cds3835;Parent=gene3939;Dbxref=Genbank:WP_002209522.1;Name=WP_002209522.1;gbkey=CDS;product=ribose ABC transporter permease;protein_id=WP_002209522.1;transl_table=11
NC_004088.1	RefSeq	gene	4309243	4310187	.	+	.	ID=gene3940;Name=Y_RS19765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19765;old_locus_tag=y3867
NC_004088.1	Protein Homology	CDS	4309243	4310187	.	+	0	ID=cds3836;Parent=gene3940;Dbxref=Genbank:WP_002209521.1;Name=WP_002209521.1;gbkey=CDS;product=ribose ABC transporter substrate-binding protein;protein_id=WP_002209521.1;transl_table=11
NC_004088.1	RefSeq	gene	4310262	4310945	.	+	.	ID=gene3941;Name=Y_RS19770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19770;old_locus_tag=y3868
NC_004088.1	Protein Homology	CDS	4310262	4310945	.	+	0	ID=cds3837;Parent=gene3941;Dbxref=Genbank:WP_002209520.1;Name=WP_002209520.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209520.1;transl_table=11
NC_004088.1	RefSeq	gene	4310971	4311831	.	+	.	ID=gene3942;Name=Y_RS19775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19775;old_locus_tag=y3869
NC_004088.1	Protein Homology	CDS	4310971	4311831	.	+	0	ID=cds3838;Parent=gene3942;Dbxref=Genbank:WP_002209519.1;Name=WP_002209519.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209519.1;transl_table=11
NC_004088.1	RefSeq	gene	4311841	4312848	.	+	.	ID=gene3943;Name=Y_RS19780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19780;old_locus_tag=y3870
NC_004088.1	Protein Homology	CDS	4311841	4312848	.	+	0	ID=cds3839;Parent=gene3943;Dbxref=Genbank:WP_002209518.1;Name=WP_002209518.1;gbkey=CDS;product=sugar kinase;protein_id=WP_002209518.1;transl_table=11
NC_004088.1	RefSeq	gene	4313033	4313770	.	-	.	ID=gene3944;Name=Y_RS19785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19785;old_locus_tag=y3871
NC_004088.1	Protein Homology	CDS	4313033	4313770	.	-	0	ID=cds3840;Parent=gene3944;Dbxref=Genbank:WP_002209516.1;Name=WP_002209516.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_002209516.1;transl_table=11
NC_004088.1	RefSeq	gene	4313770	4314039	.	-	.	ID=gene3945;Name=Y_RS19790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19790
NC_004088.1	Protein Homology	CDS	4313770	4314039	.	-	0	ID=cds3841;Parent=gene3945;Dbxref=Genbank:WP_002215491.1;Name=WP_002215491.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215491.1;transl_table=11
NC_004088.1	RefSeq	gene	4314534	4315229	.	+	.	ID=gene3946;Name=Y_RS19795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19795;old_locus_tag=y3872
NC_004088.1	Protein Homology	CDS	4314534	4315229	.	+	0	ID=cds3842;Parent=gene3946;Dbxref=Genbank:WP_002209515.1;Name=WP_002209515.1;gbkey=CDS;product=quercetin 2%2C3-dioxygenase;protein_id=WP_002209515.1;transl_table=11
NC_004088.1	RefSeq	gene	4315358	4316353	.	+	.	ID=gene3947;Name=Y_RS19800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19800;old_locus_tag=y3873
NC_004088.1	Protein Homology	CDS	4315358	4316353	.	+	0	ID=cds3843;Parent=gene3947;Dbxref=Genbank:WP_002209514.1;Name=WP_002209514.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209514.1;transl_table=11
NC_004088.1	RefSeq	gene	4316445	4317761	.	-	.	ID=gene3948;Name=Y_RS19805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19805;old_locus_tag=y3875
NC_004088.1	Protein Homology	CDS	4316445	4317761	.	-	0	ID=cds3844;Parent=gene3948;Dbxref=Genbank:WP_002209513.1;Name=WP_002209513.1;gbkey=CDS;product=idonate transporter;protein_id=WP_002209513.1;transl_table=11
NC_004088.1	RefSeq	gene	4317978	4318481	.	+	.	ID=gene3949;Name=idnK;gbkey=Gene;gene=idnK;gene_biotype=protein_coding;locus_tag=Y_RS19810;old_locus_tag=y3876
NC_004088.1	Protein Homology	CDS	4317978	4318481	.	+	0	ID=cds3845;Parent=gene3949;Dbxref=Genbank:WP_002209512.1;Name=WP_002209512.1;gbkey=CDS;gene=idnK;product=gluconokinase;protein_id=WP_002209512.1;transl_table=11
NC_004088.1	RefSeq	gene	4318663	4318896	.	+	.	ID=gene3950;Name=Y_RS19815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19815;old_locus_tag=y3877
NC_004088.1	Protein Homology	CDS	4318663	4318896	.	+	0	ID=cds3846;Parent=gene3950;Dbxref=Genbank:WP_002209511.1;Name=WP_002209511.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_002209511.1;transl_table=11
NC_004088.1	RefSeq	gene	4319087	4319227	.	+	.	ID=gene3951;Name=Y_RS19820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19820
NC_004088.1	Protein Homology	CDS	4319087	4319227	.	+	0	ID=cds3847;Parent=gene3951;Dbxref=Genbank:WP_002209510.1;Name=WP_002209510.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209510.1;transl_table=11
NC_004088.1	RefSeq	gene	4319282	4319671	.	+	.	ID=gene3952;Name=Y_RS19825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19825;old_locus_tag=y3878
NC_004088.1	Protein Homology	CDS	4319282	4319671	.	+	0	ID=cds3848;Parent=gene3952;Dbxref=Genbank:WP_002209509.1;Name=WP_002209509.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209509.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4319718	4319820	.	+	.	ID=id485;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4319911	4320504	.	-	.	ID=gene3953;Name=Y_RS19830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19830;old_locus_tag=y3879
NC_004088.1	Protein Homology	CDS	4319911	4320504	.	-	0	ID=cds3849;Parent=gene3953;Dbxref=Genbank:WP_002209508.1;Name=WP_002209508.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209508.1;transl_table=11
NC_004088.1	RefSeq	gene	4320862	4321965	.	+	.	ID=gene3954;Name=Y_RS19835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19835;old_locus_tag=y3880
NC_004088.1	Protein Homology	CDS	4320862	4321965	.	+	0	ID=cds3850;Parent=gene3954;Dbxref=Genbank:WP_002209507.1;Name=WP_002209507.1;Note=catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde;gbkey=CDS;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_002209507.1;transl_table=11
NC_004088.1	RefSeq	gene	4322134	4322415	.	+	.	ID=gene3955;Name=Y_RS19840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19840
NC_004088.1	Protein Homology	CDS	4322134	4322415	.	+	0	ID=cds3851;Parent=gene3955;Dbxref=Genbank:WP_002214584.1;Name=WP_002214584.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214584.1;transl_table=11
NC_004088.1	RefSeq	gene	4322731	4323030	.	+	.	ID=gene3956;Name=Y_RS19845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19845
NC_004088.1	Protein Homology	CDS	4322731	4323030	.	+	0	ID=cds3852;Parent=gene3956;Dbxref=Genbank:WP_002209505.1;Name=WP_002209505.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209505.1;transl_table=11
NC_004088.1	RefSeq	gene	4323037	4323324	.	+	.	ID=gene3957;Name=Y_RS19850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19850;old_locus_tag=y3882
NC_004088.1	Protein Homology	CDS	4323037	4323324	.	+	0	ID=cds3853;Parent=gene3957;Dbxref=Genbank:WP_002209504.1;Name=WP_002209504.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209504.1;transl_table=11
NC_004088.1	RefSeq	gene	4323415	4323756	.	-	.	ID=gene3958;Name=Y_RS19855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19855;old_locus_tag=y3883
NC_004088.1	Protein Homology	CDS	4323415	4323756	.	-	0	ID=cds3854;Parent=gene3958;Dbxref=Genbank:WP_011171941.1;Name=WP_011171941.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011171941.1;transl_table=11
NC_004088.1	RefSeq	gene	4325300	4334101	.	+	.	ID=gene3959;Name=Y_RS19860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19860;old_locus_tag=y3884
NC_004088.1	Protein Homology	CDS	4325300	4334101	.	+	0	ID=cds3855;Parent=gene3959;Dbxref=Genbank:WP_002209503.1;Name=WP_002209503.1;gbkey=CDS;product=invasin;protein_id=WP_002209503.1;transl_table=11
NC_004088.1	RefSeq	gene	4334309	4336006	.	-	.	ID=gene3960;Name=Y_RS19865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19865;old_locus_tag=y3885
NC_004088.1	Protein Homology	CDS	4334309	4336006	.	-	0	ID=cds3856;Parent=gene3960;Dbxref=Genbank:WP_002209502.1;Name=WP_002209502.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_002209502.1;transl_table=11
NC_004088.1	RefSeq	gene	4336512	4338695	.	+	.	ID=gene3961;Name=Y_RS19870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19870;old_locus_tag=y3886
NC_004088.1	Protein Homology	CDS	4336512	4338695	.	+	0	ID=cds3857;Parent=gene3961;Dbxref=Genbank:WP_002209500.1;Name=WP_002209500.1;gbkey=CDS;product=1%2C4-alpha-glucan-branching protein;protein_id=WP_002209500.1;transl_table=11
NC_004088.1	RefSeq	gene	4338697	4340685	.	+	.	ID=gene3962;Name=Y_RS19875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19875;old_locus_tag=y3887
NC_004088.1	Protein Homology	CDS	4338697	4340685	.	+	0	ID=cds3858;Parent=gene3962;Dbxref=Genbank:WP_002209499.1;Name=WP_002209499.1;Note=catalyzes the hydrolysis of the alpha-1%2C6-glucosidic linkages in partially depolymerized glycogen;gbkey=CDS;product=glycogen debranching protein;protein_id=WP_002209499.1;transl_table=11
NC_004088.1	RefSeq	gene	4340695	4342125	.	+	.	ID=gene3963;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=Y_RS19880;old_locus_tag=y3888
NC_004088.1	Protein Homology	CDS	4340695	4342125	.	+	0	ID=cds3859;Parent=gene3963;Dbxref=Genbank:WP_002214589.1;Name=WP_002214589.1;Note=catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate;gbkey=CDS;gene=glgC;product=glucose-1-phosphate adenylyltransferase;protein_id=WP_002214589.1;transl_table=11
NC_004088.1	RefSeq	gene	4342193	4343623	.	+	.	ID=gene3964;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=Y_RS19885;old_locus_tag=y3889
NC_004088.1	Protein Homology	CDS	4342193	4343623	.	+	0	ID=cds3860;Parent=gene3964;Dbxref=Genbank:WP_002209498.1;Name=WP_002209498.1;Note=catalyzes the formation of alpha-1%2C4-glucan chains from ADP-glucose;gbkey=CDS;gene=glgA;product=glycogen synthase;protein_id=WP_002209498.1;transl_table=11
NC_004088.1	RefSeq	gene	4343760	4346207	.	+	.	ID=gene3965;Name=Y_RS19890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19890;old_locus_tag=y3890
NC_004088.1	Protein Homology	CDS	4343760	4346207	.	+	0	ID=cds3861;Parent=gene3965;Dbxref=Genbank:WP_002209497.1;Name=WP_002209497.1;gbkey=CDS;product=glycogen phosphorylase;protein_id=WP_002209497.1;transl_table=11
NC_004088.1	RefSeq	gene	4346370	4347884	.	-	.	ID=gene3966;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=Y_RS19895;old_locus_tag=y3891
NC_004088.1	Protein Homology	CDS	4346370	4347884	.	-	0	ID=cds3862;Parent=gene3966;Dbxref=Genbank:WP_002220236.1;Name=WP_002220236.1;Note=in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions%3B anaerobic expression is repressed by the arcAB system%3B converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8%3B associates with the cytoplasmic membrane;gbkey=CDS;gene=glpD;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_002220236.1;transl_table=11
NC_004088.1	RefSeq	gene	4348283	4348657	.	+	.	ID=gene3967;Name=Y_RS19900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19900;old_locus_tag=y3892
NC_004088.1	Protein Homology	CDS	4348283	4348657	.	+	0	ID=cds3863;Parent=gene3967;Dbxref=Genbank:WP_002217865.1;Name=WP_002217865.1;gbkey=CDS;product=membrane protein;protein_id=WP_002217865.1;transl_table=11
NC_004088.1	RefSeq	gene	4348966	4349430	.	+	.	ID=gene3968;Name=Y_RS19905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19905;old_locus_tag=y3893
NC_004088.1	Protein Homology	CDS	4348966	4349430	.	+	0	ID=cds3864;Parent=gene3968;Dbxref=Genbank:WP_002209495.1;Name=WP_002209495.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209495.1;transl_table=11
NC_004088.1	RefSeq	gene	4349595	4349864	.	+	.	ID=gene3969;Name=Y_RS19910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19910
NC_004088.1	Protein Homology	CDS	4349595	4349864	.	+	0	ID=cds3865;Parent=gene3969;Dbxref=Genbank:WP_002209494.1;Name=WP_002209494.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209494.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4349972	4351711	.	+	.	ID=id486;gbkey=repeat_region
NC_004088.1	RefSeq	region	4350188	4351638	.	-	.	ID=id487;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4350219	4351004	.	-	.	ID=gene3970;Name=Y_RS19915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19915;old_locus_tag=y3895
NC_004088.1	Protein Homology	CDS	4350219	4351004	.	-	0	ID=cds3866;Parent=gene3970;Dbxref=Genbank:WP_002208932.1;Name=WP_002208932.1;gbkey=CDS;product=integrase;protein_id=WP_002208932.1;transl_table=11
NC_004088.1	RefSeq	gene	4351058	4351573	.	-	.	ID=gene3971;Name=Y_RS19920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19920
NC_004088.1	Protein Homology	CDS	4351058	4351573	.	-	0	ID=cds3867;Parent=gene3971;Dbxref=Genbank:WP_002209258.1;Name=WP_002209258.1;gbkey=CDS;product=transposase;protein_id=WP_002209258.1;transl_table=11
NC_004088.1	RefSeq	gene	4351766	4352524	.	-	.	ID=gene3972;Name=Y_RS19925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19925;old_locus_tag=y3897
NC_004088.1	Protein Homology	CDS	4351766	4352524	.	-	0	ID=cds3868;Parent=gene3972;Dbxref=Genbank:WP_002208930.1;Name=WP_002208930.1;Note=represses the glpD%2C glpFK%2C glpTQ%2C and glpACB operons involved in glycerol-3-phosphate metabolism;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208930.1;transl_table=11
NC_004088.1	RefSeq	gene	4352559	4353395	.	-	.	ID=gene3973;Name=Y_RS19930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19930;old_locus_tag=y3898
NC_004088.1	Protein Homology	CDS	4352559	4353395	.	-	0	ID=cds3869;Parent=gene3973;Dbxref=Genbank:WP_002216348.1;Name=WP_002216348.1;Note=protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity;gbkey=CDS;product=rhomboid protease GlpG;protein_id=WP_002216348.1;transl_table=11
NC_004088.1	RefSeq	gene	4353413	4353742	.	-	.	ID=gene3974;Name=glpE;gbkey=Gene;gene=glpE;gene_biotype=protein_coding;locus_tag=Y_RS19935;old_locus_tag=y3899
NC_004088.1	Protein Homology	CDS	4353413	4353742	.	-	0	ID=cds3870;Parent=gene3974;Dbxref=Genbank:WP_002218928.1;Name=WP_002218928.1;Note=belongs to rhodanese family%3B thiosulfate thiotransferase%3B in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency%3B contains an active site cysteine;gbkey=CDS;gene=glpE;product=thiosulfate sulfurtransferase GlpE;protein_id=WP_002218928.1;transl_table=11
NC_004088.1	RefSeq	gene	4354117	4356828	.	-	.	ID=gene3975;Name=Y_RS19940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19940;old_locus_tag=y3900
NC_004088.1	Protein Homology	CDS	4354117	4356828	.	-	0	ID=cds3871;Parent=gene3975;Dbxref=Genbank:WP_002208926.1;Name=WP_002208926.1;Note=Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002208926.1;transl_table=11
NC_004088.1	RefSeq	gene	4357146	4357496	.	+	.	ID=gene3976;Name=Y_RS19945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19945
NC_004088.1	GeneMarkS+	CDS	4357146	4357496	.	+	0	ID=cds3872;Parent=gene3976;Dbxref=Genbank:WP_002215922.1;Name=WP_002215922.1;gbkey=CDS;product=glycogen/starch/alpha-glucan phosphorylase;protein_id=WP_002215922.1;transl_table=11
NC_004088.1	RefSeq	gene	4357526	4359550	.	+	.	ID=gene3977;Name=Y_RS19950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19950
NC_004088.1	Protein Homology	CDS	4357526	4359550	.	+	0	ID=cds3873;Parent=gene3977;Dbxref=Genbank:WP_002430067.1;Name=WP_002430067.1;gbkey=CDS;product=maltodextrin phosphorylase;protein_id=WP_002430067.1;transl_table=11
NC_004088.1	RefSeq	gene	4359563	4361659	.	+	.	ID=gene3978;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=Y_RS19955;old_locus_tag=y3902
NC_004088.1	Protein Homology	CDS	4359563	4361659	.	+	0	ID=cds3874;Parent=gene3978;Dbxref=Genbank:WP_002208925.1;Name=WP_002208925.1;Note=amylomaltase%3B acts to release glucose from maltodextrins;gbkey=CDS;gene=malQ;product=4-alpha-glucanotransferase;protein_id=WP_002208925.1;transl_table=11
NC_004088.1	RefSeq	gene	4361988	4362563	.	-	.	ID=gene3979;Name=Y_RS19960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19960;old_locus_tag=y3903
NC_004088.1	Protein Homology	CDS	4361988	4362563	.	-	0	ID=cds3875;Parent=gene3979;Dbxref=Genbank:WP_002208924.1;Name=WP_002208924.1;Note=cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source;gbkey=CDS;product=fe/S biogenesis protein nfuA;protein_id=WP_002208924.1;transl_table=11
NC_004088.1	RefSeq	gene	4362623	4363324	.	-	.	ID=gene3980;Name=Y_RS19965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19965;old_locus_tag=y3906
NC_004088.1	Protein Homology	CDS	4362623	4363324	.	-	0	ID=cds3876;Parent=gene3980;Dbxref=Genbank:WP_002208923.1;Name=WP_002208923.1;gbkey=CDS;product=competence protein ComF;protein_id=WP_002208923.1;transl_table=11
NC_004088.1	RefSeq	gene	4363411	4364188	.	+	.	ID=gene3981;Name=Y_RS19970;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS19970;old_locus_tag=y3908;pseudo=true
NC_004088.1	Protein Homology	CDS	4363411	4364188	.	+	0	ID=cds3877;Parent=gene3981;Note=Shows carboxylesterase activity with a preference for short chain fatty acid esters%3B involved in pimeloyl-CoA synthesis;exception=annotated by transcript or proteomic data;gbkey=CDS;product=carboxylesterase;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	4364358	4364627	.	+	.	ID=gene3982;Name=Y_RS19975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19975;old_locus_tag=y3909
NC_004088.1	Protein Homology	CDS	4364358	4364627	.	+	0	ID=cds3878;Parent=gene3982;Dbxref=Genbank:WP_002208921.1;Name=WP_002208921.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208921.1;transl_table=11
NC_004088.1	RefSeq	gene	4364765	4365022	.	-	.	ID=gene3983;Name=Y_RS19980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19980;old_locus_tag=y3910
NC_004088.1	Protein Homology	CDS	4364765	4365022	.	-	0	ID=cds3879;Parent=gene3983;Dbxref=Genbank:WP_002208920.1;Name=WP_002208920.1;Note=regulatory protein that controls transcription of feoABC genes;gbkey=CDS;product=ferrous iron transporter C;protein_id=WP_002208920.1;transl_table=11
NC_004088.1	RefSeq	gene	4365058	4367373	.	-	.	ID=gene3984;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=Y_RS19985;old_locus_tag=y3911
NC_004088.1	Protein Homology	CDS	4365058	4367373	.	-	0	ID=cds3880;Parent=gene3984;Dbxref=Genbank:WP_002208919.1;Name=WP_002208919.1;Note=cytoplasmic membrane ferrous uptake system permease%3B mutations disrupt the ability of Escherichia coli to take up ferrous iron%3B GTP-binding protein which requires GTP for efficient iron(II) uptake;gbkey=CDS;gene=feoB;product=iron transporter;protein_id=WP_002208919.1;transl_table=11
NC_004088.1	RefSeq	gene	4367465	4367692	.	-	.	ID=gene3985;Name=Y_RS19990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19990;old_locus_tag=y3912
NC_004088.1	Protein Homology	CDS	4367465	4367692	.	-	0	ID=cds3881;Parent=gene3985;Dbxref=Genbank:WP_002208918.1;Name=WP_002208918.1;gbkey=CDS;product=iron transporter;protein_id=WP_002208918.1;transl_table=11
NC_004088.1	RefSeq	gene	4367687	4367833	.	+	.	ID=gene3986;Name=Y_RS19995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS19995
NC_004088.1	Protein Homology	CDS	4367687	4367833	.	+	0	ID=cds3882;Parent=gene3986;Dbxref=Genbank:WP_002215925.1;Name=WP_002215925.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215925.1;transl_table=11
NC_004088.1	RefSeq	gene	4368216	4370591	.	-	.	ID=gene3987;Name=Y_RS20000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20000;old_locus_tag=y3913
NC_004088.1	Protein Homology	CDS	4368216	4370591	.	-	0	ID=cds3883;Parent=gene3987;Dbxref=Genbank:WP_002208916.1;Name=WP_002208916.1;gbkey=CDS;product=transcription accessory protein;protein_id=WP_002208916.1;transl_table=11
NC_004088.1	RefSeq	gene	4371125	4371640	.	+	.	ID=gene3988;Name=Y_RS20005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20005;old_locus_tag=y3915
NC_004088.1	Protein Homology	CDS	4371125	4371640	.	+	0	ID=cds3884;Parent=gene3988;Dbxref=Genbank:WP_002208915.1;Name=WP_002208915.1;gbkey=CDS;product=transcription elongation factor GreB;protein_id=WP_002208915.1;transl_table=11
NC_004088.1	RefSeq	gene	4371776	4372495	.	+	.	ID=gene3989;Name=ompR;gbkey=Gene;gene=ompR;gene_biotype=protein_coding;locus_tag=Y_RS20010;old_locus_tag=y3916
NC_004088.1	Protein Homology	CDS	4371776	4372495	.	+	0	ID=cds3885;Parent=gene3989;Dbxref=Genbank:WP_002208914.1;Name=WP_002208914.1;Note=part of two-component system EnvZ/OmpR%3B regulates transcription of outer membrane porin genes ompC/F%3B under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR%3B the result is increased expression of ompC and repression of ompF%3B also functions in regulation of other genes%3B forms dimers upon phosphorylation;gbkey=CDS;gene=ompR;product=two-component system response regulator;protein_id=WP_002208914.1;transl_table=11
NC_004088.1	RefSeq	gene	4372492	4373844	.	+	.	ID=gene3990;Name=envZ;gbkey=Gene;gene=envZ;gene_biotype=protein_coding;gene_synonym=ompB;locus_tag=Y_RS20015;old_locus_tag=y3917
NC_004088.1	Protein Homology	CDS	4372492	4373844	.	+	0	ID=cds3886;Parent=gene3990;Dbxref=Genbank:WP_002208913.1;Name=WP_002208913.1;Note=membrane-localized osmosensor%3B histidine kinase%3B in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR;gbkey=CDS;gene=envZ;product=two-component system sensor histidine kinase;protein_id=WP_002208913.1;transl_table=11
NC_004088.1	RefSeq	gene	4373979	4375598	.	-	.	ID=gene3991;Name=Y_RS20020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20020;old_locus_tag=y3918
NC_004088.1	Protein Homology	CDS	4373979	4375598	.	-	0	ID=cds3887;Parent=gene3991;Dbxref=Genbank:WP_002208912.1;Name=WP_002208912.1;Note=PEP carboxykinase%3B PEP carboxylase%3B PEPCK%3B catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP;gbkey=CDS;product=phosphoenolpyruvate carboxykinase [ATP];protein_id=WP_002208912.1;transl_table=11
NC_004088.1	RefSeq	gene	4375795	4376676	.	-	.	ID=gene3992;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=Y_RS20025;old_locus_tag=y3919
NC_004088.1	Protein Homology	CDS	4375795	4376676	.	-	0	ID=cds3888;Parent=gene3992;Dbxref=Genbank:WP_002208911.1;Name=WP_002208911.1;Note=becomes active under oxidative stress%3B four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive%3B oxidative stress results in oxidized cysteines%2C release of zinc%2C and binding of Hsp33 to aggregation-prone proteins%3B forms dimers and higher order oligomers;gbkey=CDS;gene=hslO;product=molecular chaperone Hsp33;protein_id=WP_002208911.1;transl_table=11
NC_004088.1	RefSeq	gene	4376839	4377246	.	-	.	ID=gene3993;Name=Y_RS20030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20030;old_locus_tag=y3920
NC_004088.1	Protein Homology	CDS	4376839	4377246	.	-	0	ID=cds3889;Parent=gene3993;Dbxref=Genbank:WP_002208910.1;Name=WP_002208910.1;gbkey=CDS;product=heat-shock protein Hsp15;protein_id=WP_002208910.1;transl_table=11
NC_004088.1	RefSeq	gene	4377275	4377955	.	-	.	ID=gene3994;Name=Y_RS20035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20035;old_locus_tag=y3921
NC_004088.1	Protein Homology	CDS	4377275	4377955	.	-	0	ID=cds3890;Parent=gene3994;Dbxref=Genbank:WP_002208909.1;Name=WP_002208909.1;gbkey=CDS;product=nucleotidase;protein_id=WP_002208909.1;transl_table=11
NC_004088.1	RefSeq	gene	4378099	4380246	.	-	.	ID=gene3995;Name=Y_RS20040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20040;old_locus_tag=y3922
NC_004088.1	Protein Homology	CDS	4378099	4380246	.	-	0	ID=cds3891;Parent=gene3995;Dbxref=Genbank:WP_002208908.1;Name=WP_002208908.1;gbkey=CDS;product=intracellular growth attenuator protein IgaA;protein_id=WP_002208908.1;transl_table=11
NC_004088.1	RefSeq	gene	4380526	4380720	.	+	.	ID=gene3996;Name=Y_RS20045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20045
NC_004088.1	Protein Homology	CDS	4380526	4380720	.	+	0	ID=cds3892;Parent=gene3996;Dbxref=Genbank:WP_002216768.1;Name=WP_002216768.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002216768.1;transl_table=11
NC_004088.1	RefSeq	gene	4380833	4381378	.	+	.	ID=gene3997;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=Y_RS20050;old_locus_tag=y3923
NC_004088.1	Protein Homology	CDS	4380833	4381378	.	+	0	ID=cds3893;Parent=gene3997;Dbxref=Genbank:WP_002208907.1;Name=WP_002208907.1;Note=ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose;gbkey=CDS;gene=nudE;product=ADP-ribose diphosphatase;protein_id=WP_002208907.1;transl_table=11
NC_004088.1	RefSeq	gene	4381514	4384069	.	-	.	ID=gene3998;Name=mrcA;gbkey=Gene;gene=mrcA;gene_biotype=protein_coding;locus_tag=Y_RS20055;old_locus_tag=y3924
NC_004088.1	Protein Homology	CDS	4381514	4384069	.	-	0	ID=cds3894;Parent=gene3998;Dbxref=Genbank:WP_002208906.1;Name=WP_002208906.1;Note=bifunctional murein transglycosylase/murein transpeptidase%3B penicillin-binding protein 1A%3B involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation%3B penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits;gbkey=CDS;gene=mrcA;product=penicillin-binding protein 1A;protein_id=WP_002208906.1;transl_table=11
NC_004088.1	RefSeq	gene	4384189	4385085	.	+	.	ID=gene3999;Name=Y_RS20060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20060;old_locus_tag=y3925
NC_004088.1	Protein Homology	CDS	4384189	4385085	.	+	0	ID=cds3895;Parent=gene3999;Dbxref=Genbank:WP_002208905.1;Name=WP_002208905.1;gbkey=CDS;product=pilus assembly protein HofM;protein_id=WP_002208905.1;transl_table=11
NC_004088.1	RefSeq	gene	4385085	4385690	.	+	.	ID=gene4000;Name=Y_RS20065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20065;old_locus_tag=y3927
NC_004088.1	Protein Homology	CDS	4385085	4385690	.	+	0	ID=cds3896;Parent=gene4000;Dbxref=Genbank:WP_002208904.1;Name=WP_002208904.1;gbkey=CDS;product=pilus assembly protein PilN;protein_id=WP_002208904.1;transl_table=11
NC_004088.1	RefSeq	gene	4385683	4386264	.	+	.	ID=gene4001;Name=Y_RS20070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20070;old_locus_tag=y3928
NC_004088.1	Protein Homology	CDS	4385683	4386264	.	+	0	ID=cds3897;Parent=gene4001;Dbxref=Genbank:WP_002217890.1;Name=WP_002217890.1;gbkey=CDS;product=membrane protein;protein_id=WP_002217890.1;transl_table=11
NC_004088.1	RefSeq	gene	4386299	4386658	.	+	.	ID=gene4002;Name=Y_RS20075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20075;old_locus_tag=y3929
NC_004088.1	Protein Homology	CDS	4386299	4386658	.	+	0	ID=cds3898;Parent=gene4002;Dbxref=Genbank:WP_002223837.1;Name=WP_002223837.1;gbkey=CDS;product=membrane protein;protein_id=WP_002223837.1;transl_table=11
NC_004088.1	RefSeq	gene	4386661	4387050	.	-	.	ID=gene4003;Name=Y_RS20080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20080;old_locus_tag=y3931
NC_004088.1	Protein Homology	CDS	4386661	4387050	.	-	0	ID=cds3899;Parent=gene4003;Dbxref=Genbank:WP_002208901.1;Name=WP_002208901.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002208901.1;transl_table=11
NC_004088.1	RefSeq	gene	4387085	4388209	.	+	.	ID=gene4004;Name=hofQ;gbkey=Gene;gene=hofQ;gene_biotype=protein_coding;locus_tag=Y_RS20085;old_locus_tag=y3932
NC_004088.1	Protein Homology	CDS	4387085	4388209	.	+	0	ID=cds3900;Parent=gene4004;Dbxref=Genbank:WP_002228144.1;Name=WP_002228144.1;Note=outer membrane porin probably involved in uptake of extracellular double-stranded DNA%3B similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa;gbkey=CDS;gene=hofQ;product=porin;protein_id=WP_002228144.1;transl_table=11
NC_004088.1	RefSeq	gene	4388558	4389079	.	+	.	ID=gene4005;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=Y_RS20090;old_locus_tag=y3933
NC_004088.1	Protein Homology	CDS	4388558	4389079	.	+	0	ID=cds3901;Parent=gene4005;Dbxref=Genbank:WP_002208899.1;Name=WP_002208899.1;Note=type I enzyme similar to type II but differentially regulated%3B major shikimate kinase in fully repressed cells%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis;gbkey=CDS;gene=aroK;product=shikimate kinase;protein_id=WP_002208899.1;transl_table=11
NC_004088.1	RefSeq	gene	4389136	4390224	.	+	.	ID=gene4006;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=Y_RS20095;old_locus_tag=y3934
NC_004088.1	Protein Homology	CDS	4389136	4390224	.	+	0	ID=cds3902;Parent=gene4006;Dbxref=Genbank:WP_002208898.1;Name=WP_002208898.1;Note=catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis;gbkey=CDS;gene=aroB;product=3-dehydroquinate synthase;protein_id=WP_002208898.1;transl_table=11
NC_004088.1	RefSeq	gene	4390478	4391467	.	+	.	ID=gene4007;Name=Y_RS20100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20100;old_locus_tag=y3936
NC_004088.1	Protein Homology	CDS	4390478	4391467	.	+	0	ID=cds3903;Parent=gene4007;Dbxref=Genbank:WP_002223839.1;Name=WP_002223839.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002223839.1;transl_table=11
NC_004088.1	RefSeq	gene	4391551	4392366	.	+	.	ID=gene4008;Name=Y_RS20105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20105;old_locus_tag=y3937
NC_004088.1	Protein Homology	CDS	4391551	4392366	.	+	0	ID=cds3904;Parent=gene4008;Dbxref=Genbank:WP_002208895.1;Name=WP_002208895.1;gbkey=CDS;product=DNA adenine methylase;protein_id=WP_002208895.1;transl_table=11
NC_004088.1	RefSeq	gene	4392669	4393346	.	+	.	ID=gene4009;Name=Y_RS20110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20110;old_locus_tag=y3938
NC_004088.1	Protein Homology	CDS	4392669	4393346	.	+	0	ID=cds3905;Parent=gene4009;Dbxref=Genbank:WP_002215694.1;Name=WP_002215694.1;gbkey=CDS;product=ribulose-phosphate 3-epimerase;protein_id=WP_002215694.1;transl_table=11
NC_004088.1	RefSeq	gene	4393339	4394037	.	+	.	ID=gene4010;Name=Y_RS20115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20115;old_locus_tag=y3939
NC_004088.1	Protein Homology	CDS	4393339	4394037	.	+	0	ID=cds3906;Parent=gene4010;Dbxref=Genbank:WP_002208892.1;Name=WP_002208892.1;Note=catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate;gbkey=CDS;product=phosphoglycolate phosphatase;protein_id=WP_002208892.1;transl_table=11
NC_004088.1	RefSeq	gene	4394039	4395079	.	+	.	ID=gene4011;Name=Y_RS20120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20120;old_locus_tag=y3940
NC_004088.1	Protein Homology	CDS	4394039	4395079	.	+	0	ID=cds3907;Parent=gene4011;Dbxref=Genbank:WP_002208891.1;Name=WP_002208891.1;gbkey=CDS;product=tryptophanyl-tRNA synthetase;protein_id=WP_002208891.1;transl_table=11
NC_004088.1	RefSeq	gene	4395216	4396628	.	-	.	ID=gene4012;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=Y_RS20125;old_locus_tag=y3941
NC_004088.1	Protein Homology	CDS	4395216	4396628	.	-	0	ID=cds3908;Parent=gene4012;Dbxref=Genbank:WP_002208890.1;Name=WP_002208890.1;Note=multifunction enzyme consisting of uroporphyrin-III C-methyltransferase%2C precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase%3B catalyzes the methylation of uroporphyrinogen III to form precorrin-2%2C then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin;gbkey=CDS;gene=cysG;product=siroheme synthase 2;protein_id=WP_002208890.1;transl_table=11
NC_004088.1	RefSeq	gene	4396698	4397504	.	-	.	ID=gene4013;Name=Y_RS20130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20130;old_locus_tag=y3942
NC_004088.1	Protein Homology	CDS	4396698	4397504	.	-	0	ID=cds3909;Parent=gene4013;Dbxref=Genbank:WP_002208888.1;Name=WP_002208888.1;Note=member of the FNT family of formate and nitrite transporters;gbkey=CDS;product=nitrite transporter NirC;protein_id=WP_002208888.1;transl_table=11
NC_004088.1	RefSeq	gene	4397719	4398045	.	-	.	ID=gene4014;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=Y_RS20135;old_locus_tag=y3944
NC_004088.1	Protein Homology	CDS	4397719	4398045	.	-	0	ID=cds3910;Parent=gene4014;Dbxref=Genbank:WP_002208887.1;Name=WP_002208887.1;Note=involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+%3B bounds to NirB%2C the cytoplasmic subunit%2C whose expression is induced at high nitrate concentrations;gbkey=CDS;gene=nirD;product=nitrite reductase small subunit;protein_id=WP_002208887.1;transl_table=11
NC_004088.1	RefSeq	gene	4398042	4400588	.	-	.	ID=gene4015;Name=Y_RS20140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20140;old_locus_tag=y3945
NC_004088.1	Protein Homology	CDS	4398042	4400588	.	-	0	ID=cds3911;Parent=gene4015;Dbxref=Genbank:WP_002208886.1;Name=WP_002208886.1;gbkey=CDS;product=nitrite reductase subunit NirD;protein_id=WP_002208886.1;transl_table=11
NC_004088.1	RefSeq	gene	4400910	4402208	.	+	.	ID=gene4016;Name=Y_RS20145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20145;old_locus_tag=y3946
NC_004088.1	Protein Homology	CDS	4400910	4402208	.	+	0	ID=cds3912;Parent=gene4016;Dbxref=Genbank:WP_002228747.1;Name=WP_002228747.1;Note=Catalyzes the deamination of cytosine to uracil and ammonia;gbkey=CDS;product=cytosine deaminase;protein_id=WP_002228747.1;transl_table=11
NC_004088.1	RefSeq	gene	4402293	4403477	.	-	.	ID=gene4017;Name=Y_RS20150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20150;old_locus_tag=y3947
NC_004088.1	Protein Homology	CDS	4402293	4403477	.	-	0	ID=cds3913;Parent=gene4017;Dbxref=Genbank:WP_002215690.1;Name=WP_002215690.1;gbkey=CDS;product=protein TsgA;protein_id=WP_002215690.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	4403813	4403831	.	+	.	ID=id488;Dbxref=CollecTF:EXPSITE_00000d70;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y3948;gbkey=protein_bind
NC_004088.1	RefSeq	gene	4403963	4406023	.	+	.	ID=gene4018;Name=Y_RS20155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20155;old_locus_tag=y3948
NC_004088.1	Protein Homology	CDS	4403963	4406023	.	+	0	ID=cds3914;Parent=gene4018;Dbxref=Genbank:WP_002208882.1;Name=WP_002208882.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_002208882.1;transl_table=11
NC_004088.1	RefSeq	gene	4406136	4407122	.	-	.	ID=gene4019;Name=Y_RS20160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20160;old_locus_tag=y3949
NC_004088.1	Protein Homology	CDS	4406136	4407122	.	-	0	ID=cds3915;Parent=gene4019;Dbxref=Genbank:WP_002208881.1;Name=WP_002208881.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_002208881.1;transl_table=11
NC_004088.1	RefSeq	gene	4407371	4408684	.	-	.	ID=gene4020;Name=Y_RS20165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20165;old_locus_tag=y3950
NC_004088.1	Protein Homology	CDS	4407371	4408684	.	-	0	ID=cds3916;Parent=gene4020;Dbxref=Genbank:WP_002208880.1;Name=WP_002208880.1;Note=catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate;gbkey=CDS;product=glycosyl hydrolase;protein_id=WP_002208880.1;transl_table=11
NC_004088.1	RefSeq	gene	4409200	4409769	.	+	.	ID=gene4021;Name=Y_RS20170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20170;old_locus_tag=y3951
NC_004088.1	Protein Homology	CDS	4409200	4409769	.	+	0	ID=cds3917;Parent=gene4021;Dbxref=Genbank:WP_002208878.1;Name=WP_002208878.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_002208878.1;transl_table=11
NC_004088.1	RefSeq	gene	4410089	4411630	.	+	.	ID=gene4022;Name=Y_RS20175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20175;old_locus_tag=y3952
NC_004088.1	Protein Homology	CDS	4410089	4411630	.	+	0	ID=cds3918;Parent=gene4022;Dbxref=Genbank:WP_002215686.1;Name=WP_002215686.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215686.1;transl_table=11
NC_004088.1	RefSeq	gene	4411873	4412448	.	+	.	ID=gene4023;Name=Y_RS20180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20180;old_locus_tag=y3953
NC_004088.1	Protein Homology	CDS	4411873	4412448	.	+	0	ID=cds3919;Parent=gene4023;Dbxref=Genbank:WP_002223842.1;Name=WP_002223842.1;Note=TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity;gbkey=CDS;product=anthranilate synthase subunit II;protein_id=WP_002223842.1;transl_table=11
NC_004088.1	RefSeq	gene	4412581	4413798	.	+	.	ID=gene4024;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;locus_tag=Y_RS20185;old_locus_tag=y3954
NC_004088.1	Protein Homology	CDS	4412581	4413798	.	+	0	ID=cds3920;Parent=gene4024;Dbxref=Genbank:WP_002212295.1;Name=WP_002212295.1;Note=DapATase%3B bifunctional enzyme that functions in arginine and lysine biosynthetic pathways%3B catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2%2C6-diaminoheptanedioate;gbkey=CDS;gene=argD;product=acetylornithine aminotransferase;protein_id=WP_002212295.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4413835	4414004	.	+	.	ID=id489;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4414024	4416144	.	-	.	ID=gene4025;Name=Y_RS20190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20190;old_locus_tag=y3955
NC_004088.1	Protein Homology	CDS	4414024	4416144	.	-	0	ID=cds3921;Parent=gene4025;Dbxref=Genbank:WP_002212296.1;Name=WP_002212296.1;gbkey=CDS;product=membrane protein;protein_id=WP_002212296.1;transl_table=11
NC_004088.1	RefSeq	gene	4416230	4416862	.	-	.	ID=gene4026;Name=Y_RS20195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20195;old_locus_tag=y3956
NC_004088.1	Protein Homology	CDS	4416230	4416862	.	-	0	ID=cds3922;Parent=gene4026;Dbxref=Genbank:WP_002212297.1;Name=WP_002212297.1;Note=cAMP receptor protein%3B complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002212297.1;transl_table=11
NC_004088.1	RefSeq	gene	4417198	4417605	.	+	.	ID=gene4027;Name=Y_RS20200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20200;old_locus_tag=y3957
NC_004088.1	Protein Homology	CDS	4417198	4417605	.	+	0	ID=cds3923;Parent=gene4027;Dbxref=Genbank:WP_002212298.1;Name=WP_002212298.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212298.1;transl_table=11
NC_004088.1	RefSeq	gene	4417677	4418108	.	+	.	ID=gene4028;Name=Y_RS20205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20205;old_locus_tag=y3958
NC_004088.1	Protein Homology	CDS	4417677	4418108	.	+	0	ID=cds3924;Parent=gene4028;Dbxref=Genbank:WP_002228139.1;Name=WP_002228139.1;gbkey=CDS;product=membrane protein;protein_id=WP_002228139.1;transl_table=11
NC_004088.1	RefSeq	gene	4418286	4419155	.	-	.	ID=gene4029;Name=Y_RS20210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20210;old_locus_tag=y3959
NC_004088.1	Protein Homology	CDS	4418286	4419155	.	-	0	ID=cds3925;Parent=gene4029;Dbxref=Genbank:WP_002212300.1;Name=WP_002212300.1;gbkey=CDS;product=phosphoribulokinase;protein_id=WP_002212300.1;transl_table=11
NC_004088.1	RefSeq	gene	4419304	4419540	.	-	.	ID=gene4030;Name=Y_RS20215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20215;old_locus_tag=y3960
NC_004088.1	Protein Homology	CDS	4419304	4419540	.	-	0	ID=cds3926;Parent=gene4030;Dbxref=Genbank:WP_002212301.1;Name=WP_002212301.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212301.1;transl_table=11
NC_004088.1	RefSeq	gene	4419537	4420517	.	-	.	ID=gene4031;Name=Y_RS20220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20220;old_locus_tag=y3961
NC_004088.1	Protein Homology	CDS	4419537	4420517	.	-	0	ID=cds3927;Parent=gene4031;Dbxref=Genbank:WP_002212302.1;Name=WP_002212302.1;gbkey=CDS;product=hydrolase;protein_id=WP_002212302.1;transl_table=11
NC_004088.1	RefSeq	gene	4420619	4421221	.	+	.	ID=gene4032;Name=Y_RS20225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20225;old_locus_tag=y3962
NC_004088.1	Protein Homology	CDS	4420619	4421221	.	+	0	ID=cds3928;Parent=gene4032;Dbxref=Genbank:WP_002212303.1;Name=WP_002212303.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_002212303.1;transl_table=11
NC_004088.1	RefSeq	gene	4421424	4422485	.	+	.	ID=gene4033;Name=tauA;gbkey=Gene;gene=tauA;gene_biotype=protein_coding;locus_tag=Y_RS20230;old_locus_tag=y3963
NC_004088.1	Protein Homology	CDS	4421424	4422485	.	+	0	ID=cds3929;Parent=gene4033;Dbxref=Genbank:WP_002212305.1;Name=WP_002212305.1;Note=with TauB and TauC is responsible for taurine uptake.;gbkey=CDS;gene=tauA;product=taurine ABC transporter substrate-binding protein;protein_id=WP_002212305.1;transl_table=11
NC_004088.1	RefSeq	gene	4422494	4423261	.	+	.	ID=gene4034;Name=tauB;gbkey=Gene;gene=tauB;gene_biotype=protein_coding;locus_tag=Y_RS20235;old_locus_tag=y3964
NC_004088.1	Protein Homology	CDS	4422494	4423261	.	+	0	ID=cds3930;Parent=gene4034;Dbxref=Genbank:WP_002212307.1;Name=WP_002212307.1;Note=Part of the ABC transporter complex tauABC involved in taurine import;gbkey=CDS;gene=tauB;product=taurine import ATP-binding protein TauB;protein_id=WP_002212307.1;transl_table=11
NC_004088.1	RefSeq	gene	4423258	4424112	.	+	.	ID=gene4035;Name=Y_RS20240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20240;old_locus_tag=y3965
NC_004088.1	Protein Homology	CDS	4423258	4424112	.	+	0	ID=cds3931;Parent=gene4035;Dbxref=Genbank:WP_002212309.1;Name=WP_002212309.1;gbkey=CDS;product=taurine ABC transporter permease;protein_id=WP_002212309.1;transl_table=11
NC_004088.1	RefSeq	gene	4424109	4424957	.	+	.	ID=gene4036;Name=tauD;gbkey=Gene;gene=tauD;gene_biotype=protein_coding;locus_tag=Y_RS20245;old_locus_tag=y3966
NC_004088.1	Protein Homology	CDS	4424109	4424957	.	+	0	ID=cds3932;Parent=gene4036;Dbxref=Genbank:WP_002212310.1;Name=WP_002212310.1;Note=catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide%3B non-heme iron oxidase%3B allows the use of taurine as an alternative sulfur source%3B forms homodimers;gbkey=CDS;gene=tauD;product=taurine dioxygenase;protein_id=WP_002212310.1;transl_table=11
NC_004088.1	RefSeq	gene	4424970	4425950	.	-	.	ID=gene4037;Name=Y_RS20250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20250;old_locus_tag=y3967
NC_004088.1	Protein Homology	CDS	4424970	4425950	.	-	0	ID=cds3933;Parent=gene4037;Dbxref=Genbank:WP_002212311.1;Name=WP_002212311.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_002212311.1;transl_table=11
NC_004088.1	RefSeq	gene	4426043	4427032	.	-	.	ID=gene4038;Name=Y_RS20255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20255;old_locus_tag=y3968
NC_004088.1	Protein Homology	CDS	4426043	4427032	.	-	0	ID=cds3934;Parent=gene4038;Dbxref=Genbank:WP_002212312.1;Name=WP_002212312.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_002212312.1;transl_table=11
NC_004088.1	RefSeq	gene	4427167	4429085	.	-	.	ID=gene4039;Name=Y_RS20260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS20260;pseudo=true
NC_004088.1	Protein Homology	CDS	4427167	4429085	.	-	0	ID=cds3935;Parent=gene4039;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ABC transporter ATP-binding protein;pseudo=true;transl_table=11
NC_004088.1	RefSeq	gene	4429336	4429884	.	+	.	ID=gene4040;Name=Y_RS20265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20265;old_locus_tag=y3971
NC_004088.1	Protein Homology	CDS	4429336	4429884	.	+	0	ID=cds3936;Parent=gene4040;Dbxref=Genbank:WP_002215966.1;Name=WP_002215966.1;Note=required for KefB activity;gbkey=CDS;product=glutathione-regulated potassium-efflux system ancillary protein KefG;protein_id=WP_002215966.1;transl_table=11
NC_004088.1	RefSeq	gene	4429888	4431696	.	+	.	ID=gene4041;Name=Y_RS20270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20270;old_locus_tag=y3972
NC_004088.1	Protein Homology	CDS	4429888	4431696	.	+	0	ID=cds3937;Parent=gene4041;Dbxref=Genbank:WP_002212314.1;Name=WP_002212314.1;Note=involved in potassium efflux;gbkey=CDS;product=glutathione-regulated potassium-efflux system protein KefB;protein_id=WP_002212314.1;transl_table=11
NC_004088.1	RefSeq	gene	4431712	4431933	.	+	.	ID=gene4042;Name=Y_RS20275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20275;old_locus_tag=y3973
NC_004088.1	Protein Homology	CDS	4431712	4431933	.	+	0	ID=cds3938;Parent=gene4042;Dbxref=Genbank:WP_002212315.1;Name=WP_002212315.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212315.1;transl_table=11
NC_004088.1	RefSeq	gene	4432028	4432615	.	+	.	ID=gene4043;Name=Y_RS20280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20280;old_locus_tag=y3975
NC_004088.1	Protein Homology	CDS	4432028	4432615	.	+	0	ID=cds3939;Parent=gene4043;Dbxref=Genbank:WP_002212316.1;Name=WP_002212316.1;Note=rotamase;gbkey=CDS;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_002212316.1;transl_table=11
NC_004088.1	RefSeq	gene	4432836	4433054	.	-	.	ID=gene4044;Name=Y_RS20285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20285;old_locus_tag=y3976
NC_004088.1	Protein Homology	CDS	4432836	4433054	.	-	0	ID=cds3940;Parent=gene4044;Dbxref=Genbank:WP_002212317.1;Name=WP_002212317.1;Note=required for phi X174 lysis;gbkey=CDS;product=protein SlyX;protein_id=WP_002212317.1;transl_table=11
NC_004088.1	RefSeq	gene	4433369	4434169	.	+	.	ID=gene4045;Name=Y_RS20290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20290;old_locus_tag=y3977
NC_004088.1	Protein Homology	CDS	4433369	4434169	.	+	0	ID=cds3941;Parent=gene4045;Dbxref=Genbank:WP_002212318.1;Name=WP_002212318.1;Note=rotamase;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_002212318.1;transl_table=11
NC_004088.1	RefSeq	gene	4434423	4435145	.	+	.	ID=gene4046;Name=Y_RS20295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20295;old_locus_tag=y3978
NC_004088.1	Protein Homology	CDS	4434423	4435145	.	+	0	ID=cds3942;Parent=gene4046;Dbxref=Genbank:WP_002212319.1;Name=WP_002212319.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002212319.1;transl_table=11
NC_004088.1	RefSeq	gene	4435145	4435540	.	+	.	ID=gene4047;Name=Y_RS20300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20300;old_locus_tag=y3979
NC_004088.1	Protein Homology	CDS	4435145	4435540	.	+	0	ID=cds3943;Parent=gene4047;Dbxref=Genbank:WP_002212320.1;Name=WP_002212320.1;Note=in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs;gbkey=CDS;product=sulfurtransferase TusD;protein_id=WP_002212320.1;transl_table=11
NC_004088.1	RefSeq	gene	4435540	4435905	.	+	.	ID=gene4048;Name=Y_RS20305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20305;old_locus_tag=y3980
NC_004088.1	Protein Homology	CDS	4435540	4435905	.	+	0	ID=cds3944;Parent=gene4048;Dbxref=Genbank:WP_002212321.1;Name=WP_002212321.1;gbkey=CDS;product=protein TusC;protein_id=WP_002212321.1;transl_table=11
NC_004088.1	RefSeq	gene	4435925	4436212	.	+	.	ID=gene4049;Name=Y_RS20310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20310;old_locus_tag=y3981
NC_004088.1	Protein Homology	CDS	4435925	4436212	.	+	0	ID=cds3945;Parent=gene4049;Dbxref=Genbank:WP_002212322.1;Name=WP_002212322.1;gbkey=CDS;product=protein TusB;protein_id=WP_002212322.1;transl_table=11
NC_004088.1	RefSeq	gene	4436350	4436724	.	+	.	ID=gene4050;Name=Y_RS20315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20315;old_locus_tag=y3983
NC_004088.1	Protein Homology	CDS	4436350	4436724	.	+	0	ID=cds3946;Parent=gene4050;Dbxref=Genbank:WP_002212323.1;Name=WP_002212323.1;gbkey=CDS;product=30S ribosomal protein S12;protein_id=WP_002212323.1;transl_table=11
NC_004088.1	RefSeq	gene	4436821	4437291	.	+	.	ID=gene4051;Name=Y_RS20320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20320;old_locus_tag=y3984
NC_004088.1	Protein Homology	CDS	4436821	4437291	.	+	0	ID=cds3947;Parent=gene4051;Dbxref=Genbank:WP_002212324.1;Name=WP_002212324.1;gbkey=CDS;product=30S ribosomal protein S7;protein_id=WP_002212324.1;transl_table=11
NC_004088.1	RefSeq	gene	4437385	4439493	.	+	.	ID=gene4052;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=Y_RS20325;old_locus_tag=y3985
NC_004088.1	Protein Homology	CDS	4437385	4439493	.	+	0	ID=cds3948;Parent=gene4052;Dbxref=Genbank:WP_002212325.1;Name=WP_002212325.1;Note=EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene;gbkey=CDS;gene=fusA;product=elongation factor G;protein_id=WP_002212325.1;transl_table=11
NC_004088.1	RefSeq	gene	4439566	4440750	.	+	.	ID=gene4053;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=Y_RS20330;old_locus_tag=y3986
NC_004088.1	Protein Homology	CDS	4439566	4440750	.	+	0	ID=cds3949;Parent=gene4053;Dbxref=Genbank:WP_002212326.1;Name=WP_002212326.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=elongation factor Tu;protein_id=WP_002212326.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4440800	4441528	.	+	.	ID=id490;gbkey=repeat_region
NC_004088.1	RefSeq	region	4440808	4441517	.	+	.	ID=id491;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4440953	4441411	.	+	.	ID=gene4054;Name=Y_RS20335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20335;old_locus_tag=y3987
NC_004088.1	Protein Homology	CDS	4440953	4441411	.	+	0	ID=cds3950;Parent=gene4054;Dbxref=Genbank:WP_002213775.1;Name=WP_002213775.1;gbkey=CDS;product=transposase;protein_id=WP_002213775.1;transl_table=11
NC_004088.1	RefSeq	gene	4441599	4441793	.	+	.	ID=gene4055;Name=Y_RS20340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20340
NC_004088.1	Protein Homology	CDS	4441599	4441793	.	+	0	ID=cds3951;Parent=gene4055;Dbxref=Genbank:WP_002228136.1;Name=WP_002228136.1;gbkey=CDS;product=bacterioferritin-associated ferredoxin;protein_id=WP_002228136.1;transl_table=11
NC_004088.1	RefSeq	gene	4441872	4442345	.	+	.	ID=gene4056;Name=Y_RS20345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20345;old_locus_tag=y3988
NC_004088.1	Protein Homology	CDS	4441872	4442345	.	+	0	ID=cds3952;Parent=gene4056;Dbxref=Genbank:WP_002212327.1;Name=WP_002212327.1;Note=iron storage protein;gbkey=CDS;product=bacterioferritin;protein_id=WP_002212327.1;transl_table=11
NC_004088.1	RefSeq	gene	4442759	4443070	.	+	.	ID=gene4057;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;gene_synonym=nusE;locus_tag=Y_RS20350;old_locus_tag=y3989
NC_004088.1	Protein Homology	CDS	4442759	4443070	.	+	0	ID=cds3953;Parent=gene4057;Dbxref=Genbank:WP_001181005.1;Name=WP_001181005.1;Note=NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB/S10 to boxA nucleates assembly of the antitermination complex;gbkey=CDS;gene=rpsJ;product=30S ribosomal protein S10;protein_id=WP_001181005.1;transl_table=11
NC_004088.1	RefSeq	gene	4443103	4443732	.	+	.	ID=gene4058;Name=Y_RS20355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20355;old_locus_tag=y3990
NC_004088.1	Protein Homology	CDS	4443103	4443732	.	+	0	ID=cds3954;Parent=gene4058;Dbxref=Genbank:WP_002218932.1;Name=WP_002218932.1;gbkey=CDS;product=50S ribosomal protein L3;protein_id=WP_002218932.1;transl_table=11
NC_004088.1	RefSeq	gene	4443749	4444354	.	+	.	ID=gene4059;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=Y_RS20360;old_locus_tag=y3991
NC_004088.1	Protein Homology	CDS	4443749	4444354	.	+	0	ID=cds3955;Parent=gene4059;Dbxref=Genbank:WP_002218934.1;Name=WP_002218934.1;Note=L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA;gbkey=CDS;gene=rplD;product=50S ribosomal protein L4;protein_id=WP_002218934.1;transl_table=11
NC_004088.1	RefSeq	gene	4444351	4444653	.	+	.	ID=gene4060;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=Y_RS20365;old_locus_tag=y3992
NC_004088.1	Protein Homology	CDS	4444351	4444653	.	+	0	ID=cds3956;Parent=gene4060;Dbxref=Genbank:WP_002213423.1;Name=WP_002213423.1;Note=binds third domain of 23S rRNA and protein L29%3B part of exit tunnel;gbkey=CDS;gene=rplW;product=50S ribosomal protein L23;protein_id=WP_002213423.1;transl_table=11
NC_004088.1	RefSeq	gene	4444670	4445494	.	+	.	ID=gene4061;Name=Y_RS20370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20370;old_locus_tag=y3993
NC_004088.1	Protein Homology	CDS	4444670	4445494	.	+	0	ID=cds3957;Parent=gene4061;Dbxref=Genbank:WP_002213425.1;Name=WP_002213425.1;gbkey=CDS;product=50S ribosomal protein L2;protein_id=WP_002213425.1;transl_table=11
NC_004088.1	RefSeq	gene	4445509	4445787	.	+	.	ID=gene4062;Name=Y_RS20375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20375;old_locus_tag=y5050
NC_004088.1	Protein Homology	CDS	4445509	4445787	.	+	0	ID=cds3958;Parent=gene4062;Dbxref=Genbank:WP_002213430.1;Name=WP_002213430.1;gbkey=CDS;product=30S ribosomal protein S19;protein_id=WP_002213430.1;transl_table=11
NC_004088.1	RefSeq	gene	4445802	4446134	.	+	.	ID=gene4063;Name=Y_RS20380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20380;old_locus_tag=y3994
NC_004088.1	Protein Homology	CDS	4445802	4446134	.	+	0	ID=cds3959;Parent=gene4063;Dbxref=Genbank:WP_002223844.1;Name=WP_002223844.1;gbkey=CDS;product=50S ribosomal protein L22;protein_id=WP_002223844.1;transl_table=11
NC_004088.1	RefSeq	gene	4446152	4446850	.	+	.	ID=gene4064;Name=Y_RS20385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20385;old_locus_tag=y3995
NC_004088.1	Protein Homology	CDS	4446152	4446850	.	+	0	ID=cds3960;Parent=gene4064;Dbxref=Genbank:WP_002221644.1;Name=WP_002221644.1;gbkey=CDS;product=30S ribosomal protein S3;protein_id=WP_002221644.1;transl_table=11
NC_004088.1	RefSeq	gene	4446863	4447273	.	+	.	ID=gene4065;Name=Y_RS20390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20390;old_locus_tag=y3996
NC_004088.1	Protein Homology	CDS	4446863	4447273	.	+	0	ID=cds3961;Parent=gene4065;Dbxref=Genbank:WP_002218940.1;Name=WP_002218940.1;gbkey=CDS;product=50S ribosomal protein L16;protein_id=WP_002218940.1;transl_table=11
NC_004088.1	RefSeq	gene	4447273	4447464	.	+	.	ID=gene4066;Name=Y_RS20395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20395;old_locus_tag=y3998
NC_004088.1	Protein Homology	CDS	4447273	4447464	.	+	0	ID=cds3962;Parent=gene4066;Dbxref=Genbank:WP_002218942.1;Name=WP_002218942.1;Note=one of the stabilizing components for the large ribosomal subunit;gbkey=CDS;product=50S ribosomal protein L29;protein_id=WP_002218942.1;transl_table=11
NC_004088.1	RefSeq	gene	4447464	4447718	.	+	.	ID=gene4067;Name=Y_RS20400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20400
NC_004088.1	Protein Homology	CDS	4447464	4447718	.	+	0	ID=cds3963;Parent=gene4067;Dbxref=Genbank:WP_002228135.1;Name=WP_002228135.1;gbkey=CDS;product=30S ribosomal protein S17;protein_id=WP_002228135.1;transl_table=11
NC_004088.1	RefSeq	gene	4447899	4448270	.	+	.	ID=gene4068;Name=Y_RS20405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20405;old_locus_tag=y3999
NC_004088.1	Protein Homology	CDS	4447899	4448270	.	+	0	ID=cds3964;Parent=gene4068;Dbxref=Genbank:WP_002213325.1;Name=WP_002213325.1;gbkey=CDS;product=50S ribosomal protein L14;protein_id=WP_002213325.1;transl_table=11
NC_004088.1	RefSeq	gene	4448281	4448595	.	+	.	ID=gene4069;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=Y_RS20410;old_locus_tag=y4000
NC_004088.1	Protein Homology	CDS	4448281	4448595	.	+	0	ID=cds3965;Parent=gene4069;Dbxref=Genbank:WP_002213327.1;Name=WP_002213327.1;Note=assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel;gbkey=CDS;gene=rplX;product=50S ribosomal protein L24;protein_id=WP_002213327.1;transl_table=11
NC_004088.1	RefSeq	gene	4448610	4449149	.	+	.	ID=gene4070;Name=Y_RS20415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20415;old_locus_tag=y4001
NC_004088.1	Protein Homology	CDS	4448610	4449149	.	+	0	ID=cds3966;Parent=gene4070;Dbxref=Genbank:WP_002213329.1;Name=WP_002213329.1;gbkey=CDS;product=50S ribosomal protein L5;protein_id=WP_002213329.1;transl_table=11
NC_004088.1	RefSeq	gene	4449163	4449468	.	+	.	ID=gene4071;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=Y_RS20420;old_locus_tag=y4002
NC_004088.1	Protein Homology	CDS	4449163	4449468	.	+	0	ID=cds3967;Parent=gene4071;Dbxref=Genbank:WP_002213330.1;Name=WP_002213330.1;Note=located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif;gbkey=CDS;gene=rpsN;product=30S ribosomal protein S14;protein_id=WP_002213330.1;transl_table=11
NC_004088.1	RefSeq	gene	4449502	4449894	.	+	.	ID=gene4072;Name=Y_RS20425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20425;old_locus_tag=y4003
NC_004088.1	Protein Homology	CDS	4449502	4449894	.	+	0	ID=cds3968;Parent=gene4072;Dbxref=Genbank:WP_002213332.1;Name=WP_002213332.1;gbkey=CDS;product=30S ribosomal protein S8;protein_id=WP_002213332.1;transl_table=11
NC_004088.1	RefSeq	gene	4449909	4450442	.	+	.	ID=gene4073;Name=Y_RS20430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20430;old_locus_tag=y4004
NC_004088.1	Protein Homology	CDS	4449909	4450442	.	+	0	ID=cds3969;Parent=gene4073;Dbxref=Genbank:WP_002213334.1;Name=WP_002213334.1;gbkey=CDS;product=50S ribosomal protein L6;protein_id=WP_002213334.1;transl_table=11
NC_004088.1	RefSeq	gene	4450452	4450805	.	+	.	ID=gene4074;Name=Y_RS20435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20435;old_locus_tag=y4006
NC_004088.1	Protein Homology	CDS	4450452	4450805	.	+	0	ID=cds3970;Parent=gene4074;Dbxref=Genbank:WP_002213336.1;Name=WP_002213336.1;gbkey=CDS;product=50S ribosomal protein L18;protein_id=WP_002213336.1;transl_table=11
NC_004088.1	RefSeq	gene	4450820	4451323	.	+	.	ID=gene4075;Name=Y_RS20440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20440;old_locus_tag=y4007
NC_004088.1	Protein Homology	CDS	4450820	4451323	.	+	0	ID=cds3971;Parent=gene4075;Dbxref=Genbank:WP_002213337.1;Name=WP_002213337.1;gbkey=CDS;product=30S ribosomal protein S5;protein_id=WP_002213337.1;transl_table=11
NC_004088.1	RefSeq	gene	4451326	4451505	.	+	.	ID=gene4076;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=Y_RS20445;old_locus_tag=y4008
NC_004088.1	Protein Homology	CDS	4451326	4451505	.	+	0	ID=cds3972;Parent=gene4076;Dbxref=Genbank:WP_002213339.1;Name=WP_002213339.1;Note=L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7;gbkey=CDS;gene=rpmD;product=50S ribosomal protein L30;protein_id=WP_002213339.1;transl_table=11
NC_004088.1	RefSeq	gene	4451509	4451943	.	+	.	ID=gene4077;Name=Y_RS20450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20450;old_locus_tag=y4009
NC_004088.1	Protein Homology	CDS	4451509	4451943	.	+	0	ID=cds3973;Parent=gene4077;Dbxref=Genbank:WP_002213341.1;Name=WP_002213341.1;gbkey=CDS;product=50S ribosomal protein L15;protein_id=WP_002213341.1;transl_table=11
NC_004088.1	RefSeq	gene	4451951	4453282	.	+	.	ID=gene4078;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=Y_RS20455;old_locus_tag=y4010
NC_004088.1	Protein Homology	CDS	4451951	4453282	.	+	0	ID=cds3974;Parent=gene4078;Dbxref=Genbank:WP_002213344.1;Name=WP_002213344.1;Note=forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase;gbkey=CDS;gene=secY;product=preprotein translocase subunit SecY;protein_id=WP_002213344.1;transl_table=11
NC_004088.1	RefSeq	gene	4453316	4453432	.	+	.	ID=gene4079;Name=Y_RS20460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20460
NC_004088.1	Protein Homology	CDS	4453316	4453432	.	+	0	ID=cds3975;Parent=gene4079;Dbxref=Genbank:WP_002227352.1;Name=WP_002227352.1;gbkey=CDS;product=50S ribosomal protein L36;protein_id=WP_002227352.1;transl_table=11
NC_004088.1	RefSeq	gene	4453580	4453936	.	+	.	ID=gene4080;Name=Y_RS20465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20465;old_locus_tag=y4012
NC_004088.1	Protein Homology	CDS	4453580	4453936	.	+	0	ID=cds3976;Parent=gene4080;Dbxref=Genbank:WP_002213346.1;Name=WP_002213346.1;gbkey=CDS;product=30S ribosomal protein S13;protein_id=WP_002213346.1;transl_table=11
NC_004088.1	RefSeq	gene	4453953	4454342	.	+	.	ID=gene4081;Name=Y_RS20470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20470;old_locus_tag=y4013
NC_004088.1	Protein Homology	CDS	4453953	4454342	.	+	0	ID=cds3977;Parent=gene4081;Dbxref=Genbank:WP_002218948.1;Name=WP_002218948.1;gbkey=CDS;product=30S ribosomal protein S11;protein_id=WP_002218948.1;transl_table=11
NC_004088.1	RefSeq	gene	4454373	4454993	.	+	.	ID=gene4082;Name=Y_RS20475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20475;old_locus_tag=y4014
NC_004088.1	Protein Homology	CDS	4454373	4454993	.	+	0	ID=cds3978;Parent=gene4082;Dbxref=Genbank:WP_002218949.1;Name=WP_002218949.1;gbkey=CDS;product=30S ribosomal protein S4;protein_id=WP_002218949.1;transl_table=11
NC_004088.1	RefSeq	gene	4455019	4456008	.	+	.	ID=gene4083;Name=Y_RS20480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20480;old_locus_tag=y4015
NC_004088.1	Protein Homology	CDS	4455019	4456008	.	+	0	ID=cds3979;Parent=gene4083;Dbxref=Genbank:WP_002209013.1;Name=WP_002209013.1;Note=catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme;gbkey=CDS;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_002209013.1;transl_table=11
NC_004088.1	RefSeq	gene	4456049	4456438	.	+	.	ID=gene4084;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=Y_RS20485;old_locus_tag=y4016
NC_004088.1	Protein Homology	CDS	4456049	4456438	.	+	0	ID=cds3980;Parent=gene4084;Dbxref=Genbank:WP_002209014.1;Name=WP_002209014.1;Note=is a component of the macrolide binding site in the peptidyl transferase center;gbkey=CDS;gene=rplQ;product=50S ribosomal protein L17;protein_id=WP_002209014.1;transl_table=11
NC_004088.1	RefSeq	gene	4456885	4457310	.	+	.	ID=gene4085;Name=zntR;gbkey=Gene;gene=zntR;gene_biotype=protein_coding;locus_tag=Y_RS20490;old_locus_tag=y4017
NC_004088.1	Protein Homology	CDS	4456885	4457310	.	+	0	ID=cds3981;Parent=gene4085;Dbxref=Genbank:WP_002215702.1;Name=WP_002215702.1;Note=mediates expression of the zinc export protein ZntA in response to high levels of zinc%3B member of MerR family of transcriptional regulators;gbkey=CDS;gene=zntR;product=Zn(II)-responsive transcriptional regulator;protein_id=WP_002215702.1;transl_table=11
NC_004088.1	RefSeq	gene	4457398	4457598	.	+	.	ID=gene4086;Name=Y_RS20495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20495;old_locus_tag=y4018
NC_004088.1	Protein Homology	CDS	4457398	4457598	.	+	0	ID=cds3982;Parent=gene4086;Dbxref=Genbank:WP_002209016.1;Name=WP_002209016.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209016.1;transl_table=11
NC_004088.1	RefSeq	gene	4457708	4458121	.	-	.	ID=gene4087;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=Y_RS20500;old_locus_tag=y4019
NC_004088.1	Protein Homology	CDS	4457708	4458121	.	-	0	ID=cds3983;Parent=gene4087;Dbxref=Genbank:WP_002209017.1;Name=WP_002209017.1;Note=forms homopentamer%3B channel that opens in response to pressure or hypoosmotic shock;gbkey=CDS;gene=mscL;product=large-conductance mechanosensitive channel;protein_id=WP_002209017.1;transl_table=11
NC_004088.1	RefSeq	gene	4458260	4459636	.	-	.	ID=gene4088;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;gene_synonym=sapG;locus_tag=Y_RS20505;old_locus_tag=y4020
NC_004088.1	Protein Homology	CDS	4458260	4459636	.	-	0	ID=cds3984;Parent=gene4088;Dbxref=Genbank:WP_002209018.1;Name=WP_002209018.1;Note=involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain;gbkey=CDS;gene=trkA;product=potassium transporter peripheral membrane protein;protein_id=WP_002209018.1;transl_table=11
NC_004088.1	RefSeq	gene	4459692	4460981	.	-	.	ID=gene4089;Name=Y_RS20510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20510;old_locus_tag=y4021
NC_004088.1	Protein Homology	CDS	4459692	4460981	.	-	0	ID=cds3985;Parent=gene4089;Dbxref=Genbank:WP_002215705.1;Name=WP_002215705.1;Note=catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA%3B SAM-dependent methyltransferase;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase B;protein_id=WP_002215705.1;transl_table=11
NC_004088.1	RefSeq	gene	4461075	4462022	.	-	.	ID=gene4090;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=Y_RS20515;old_locus_tag=y4022
NC_004088.1	Protein Homology	CDS	4461075	4462022	.	-	0	ID=cds3986;Parent=gene4090;Dbxref=Genbank:WP_002209020.1;Name=WP_002209020.1;Note=modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation%3B inactivation of this gene in Escherichia coli severely impairs growth;gbkey=CDS;gene=fmt;product=methionyl-tRNA formyltransferase;protein_id=WP_002209020.1;transl_table=11
NC_004088.1	RefSeq	gene	4462047	4462559	.	-	.	ID=gene4091;Name=Y_RS20520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20520;old_locus_tag=y4023
NC_004088.1	Protein Homology	CDS	4462047	4462559	.	-	0	ID=cds3987;Parent=gene4091;Dbxref=Genbank:WP_002209021.1;Name=WP_002209021.1;gbkey=CDS;product=peptide deformylase;protein_id=WP_002209021.1;transl_table=11
NC_004088.1	RefSeq	gene	4462694	4463815	.	+	.	ID=gene4092;Name=Y_RS20525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20525;old_locus_tag=y4024
NC_004088.1	Protein Homology	CDS	4462694	4463815	.	+	0	ID=cds3988;Parent=gene4092;Dbxref=Genbank:WP_002209022.1;Name=WP_002209022.1;gbkey=CDS;product=DNA processing protein DprA;protein_id=WP_002209022.1;transl_table=11
NC_004088.1	RefSeq	gene	4463787	4464260	.	+	.	ID=gene4093;Name=Y_RS20530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20530;old_locus_tag=y4025
NC_004088.1	Protein Homology	CDS	4463787	4464260	.	+	0	ID=cds3989;Parent=gene4093;Dbxref=Genbank:WP_002209023.1;Name=WP_002209023.1;gbkey=CDS;product=protein Smg;protein_id=WP_002209023.1;transl_table=11
NC_004088.1	RefSeq	gene	4464301	4464840	.	+	.	ID=gene4094;Name=Y_RS20535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20535;old_locus_tag=y4026
NC_004088.1	Protein Homology	CDS	4464301	4464840	.	+	0	ID=cds3990;Parent=gene4094;Dbxref=Genbank:WP_002228134.1;Name=WP_002228134.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002228134.1;transl_table=11
NC_004088.1	RefSeq	gene	4464842	4465414	.	+	.	ID=gene4095;Name=Y_RS20540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20540;old_locus_tag=y4027
NC_004088.1	Protein Homology	CDS	4464842	4465414	.	+	0	ID=cds3991;Parent=gene4095;Dbxref=Genbank:WP_002209025.1;Name=WP_002209025.1;Note=involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs;gbkey=CDS;product=threonylcarbamoyl-AMP synthase;protein_id=WP_002209025.1;transl_table=11
NC_004088.1	RefSeq	gene	4465423	4466244	.	+	.	ID=gene4096;Name=Y_RS20545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20545;old_locus_tag=y4028
NC_004088.1	Protein Homology	CDS	4465423	4466244	.	+	0	ID=cds3992;Parent=gene4096;Dbxref=Genbank:WP_002209026.1;Name=WP_002209026.1;gbkey=CDS;product=shikimate dehydrogenase (NADP+);protein_id=WP_002209026.1;transl_table=11
NC_004088.1	RefSeq	gene	4466299	4466784	.	-	.	ID=gene4097;Name=Y_RS20550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20550;old_locus_tag=y4029
NC_004088.1	Protein Homology	CDS	4466299	4466784	.	-	0	ID=cds3993;Parent=gene4097;Dbxref=Genbank:WP_002215709.1;Name=WP_002215709.1;gbkey=CDS;product=carbonic anhydrase;protein_id=WP_002215709.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4466828	4468786	.	+	.	ID=id492;gbkey=repeat_region
NC_004088.1	RefSeq	region	4466830	4468783	.	-	.	ID=id493;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4466896	4467675	.	-	.	ID=gene4098;Name=Y_RS20555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20555;old_locus_tag=y4030
NC_004088.1	Protein Homology	CDS	4466896	4467675	.	-	0	ID=cds3994;Parent=gene4098;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004088.1	RefSeq	gene	4467675	4468697	.	-	.	ID=gene4099;Name=Y_RS20560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20560;old_locus_tag=y4031
NC_004088.1	Protein Homology	CDS	4467675	4468697	.	-	0	ID=cds3995;Parent=gene4099;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004088.1	RefSeq	gene	4468779	4469579	.	-	.	ID=gene4100;Name=Y_RS20565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20565;old_locus_tag=y4032
NC_004088.1	Protein Homology	CDS	4468779	4469579	.	-	0	ID=cds3996;Parent=gene4100;Dbxref=Genbank:WP_002209569.1;Name=WP_002209569.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209569.1;transl_table=11
NC_004088.1	RefSeq	gene	4469576	4470166	.	-	.	ID=gene4101;Name=Y_RS20570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20570;old_locus_tag=y4033
NC_004088.1	Protein Homology	CDS	4469576	4470166	.	-	0	ID=cds3997;Parent=gene4101;Dbxref=Genbank:WP_002209570.1;Name=WP_002209570.1;Note=response regulator in two-component regulatory system wtih UhpB%3B phosphorylated UhpA is a positive activator uhpT%2C a hexose phosphates transporter;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209570.1;transl_table=11
NC_004088.1	RefSeq	gene	4470283	4471974	.	-	.	ID=gene4102;Name=Y_RS20575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20575;old_locus_tag=y4034
NC_004088.1	Protein Homology	CDS	4470283	4471974	.	-	0	ID=cds3998;Parent=gene4102;Dbxref=Genbank:WP_002209571.1;Name=WP_002209571.1;Note=catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide;gbkey=CDS;product=phosphoethanolamine transferase;protein_id=WP_002209571.1;transl_table=11
NC_004088.1	RefSeq	gene	4472264	4472509	.	+	.	ID=gene4103;Name=Y_RS20580;gbkey=Gene;gene_biotype=other;locus_tag=Y_RS20580
NC_004088.1	RefSeq	gene	4472503	4473966	.	-	.	ID=gene4104;Name=Y_RS20585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20585;old_locus_tag=y4035
NC_004088.1	Protein Homology	CDS	4472503	4473966	.	-	0	ID=cds3999;Parent=gene4104;Dbxref=Genbank:WP_002209573.1;Name=WP_002209573.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209573.1;transl_table=11
NC_004088.1	RefSeq	gene	4474434	4475837	.	-	.	ID=gene4105;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=Y_RS20590;old_locus_tag=y4036
NC_004088.1	Protein Homology	CDS	4474434	4475837	.	-	0	ID=cds4000;Parent=gene4105;Dbxref=Genbank:WP_002214368.1;Name=WP_002214368.1;Note=cryptic permease that may be involved in the transport of proline across the inner membrane%3B in Salmonella typhimurium%2C the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation;gbkey=CDS;gene=proY;product=permease;protein_id=WP_002214368.1;transl_table=11
NC_004088.1	RefSeq	gene	4476255	4477787	.	-	.	ID=gene4106;Name=Y_RS20595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20595;old_locus_tag=y4037
NC_004088.1	Protein Homology	CDS	4476255	4477787	.	-	0	ID=cds4001;Parent=gene4106;Dbxref=Genbank:WP_002209575.1;Name=WP_002209575.1;Note=catalyzes the degradation of histidine to urocanate and ammmonia;gbkey=CDS;product=histidine ammonia-lyase;protein_id=WP_002209575.1;transl_table=11
NC_004088.1	RefSeq	gene	4477784	4479475	.	-	.	ID=gene4107;Name=Y_RS20600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20600;old_locus_tag=y4038
NC_004088.1	Protein Homology	CDS	4477784	4479475	.	-	0	ID=cds4002;Parent=gene4107;Dbxref=Genbank:WP_002209576.1;Name=WP_002209576.1;Note=catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism;gbkey=CDS;product=urocanate hydratase;protein_id=WP_002209576.1;transl_table=11
NC_004088.1	RefSeq	gene	4480202	4481146	.	+	.	ID=gene4108;Name=Y_RS20605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20605;old_locus_tag=y4039
NC_004088.1	Protein Homology	CDS	4480202	4481146	.	+	0	ID=cds4003;Parent=gene4108;Dbxref=Genbank:WP_002209577.1;Name=WP_002209577.1;gbkey=CDS;product=pyridoxal-5'-phosphate-dependent protein;protein_id=WP_002209577.1;transl_table=11
NC_004088.1	RefSeq	gene	4481143	4481709	.	+	.	ID=gene4109;Name=Y_RS20610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20610;old_locus_tag=y4040
NC_004088.1	Protein Homology	CDS	4481143	4481709	.	+	0	ID=cds4004;Parent=gene4109;Dbxref=Genbank:WP_002209578.1;Name=WP_002209578.1;Note=catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis;gbkey=CDS;product=adenine phosphoribosyltransferase;protein_id=WP_002209578.1;transl_table=11
NC_004088.1	RefSeq	gene	4481792	4482721	.	+	.	ID=gene4110;Name=Y_RS20615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20615;old_locus_tag=y4041
NC_004088.1	Protein Homology	CDS	4481792	4482721	.	+	0	ID=cds4005;Parent=gene4110;Dbxref=Genbank:WP_002209579.1;Name=WP_002209579.1;gbkey=CDS;product=transporter;protein_id=WP_002209579.1;transl_table=11
NC_004088.1	RefSeq	gene	4482723	4483967	.	+	.	ID=gene4111;Name=Y_RS20620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20620;old_locus_tag=y4042
NC_004088.1	Protein Homology	CDS	4482723	4483967	.	+	0	ID=cds4006;Parent=gene4111;Dbxref=Genbank:WP_002209580.1;Name=WP_002209580.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209580.1;transl_table=11
NC_004088.1	RefSeq	gene	4484490	4485443	.	+	.	ID=gene4112;Name=Y_RS20625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20625;old_locus_tag=y4043
NC_004088.1	Protein Homology	CDS	4484490	4485443	.	+	0	ID=cds4007;Parent=gene4112;Dbxref=Genbank:WP_002209581.1;Name=WP_002209581.1;gbkey=CDS;product=iron ABC transporter substrate-binding protein;protein_id=WP_002209581.1;transl_table=11
NC_004088.1	RefSeq	gene	4485453	4486412	.	+	.	ID=gene4113;Name=Y_RS20630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20630;old_locus_tag=y4044
NC_004088.1	Protein Homology	CDS	4485453	4486412	.	+	0	ID=cds4008;Parent=gene4113;Dbxref=Genbank:WP_002209582.1;Name=WP_002209582.1;gbkey=CDS;product=iron ABC transporter permease;protein_id=WP_002209582.1;transl_table=11
NC_004088.1	RefSeq	gene	4486402	4487409	.	+	.	ID=gene4114;Name=Y_RS20635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20635;old_locus_tag=y4045
NC_004088.1	Protein Homology	CDS	4486402	4487409	.	+	0	ID=cds4009;Parent=gene4114;Dbxref=Genbank:WP_002209583.1;Name=WP_002209583.1;gbkey=CDS;product=enterobactin ABC transporter permease;protein_id=WP_002209583.1;transl_table=11
NC_004088.1	RefSeq	gene	4487406	4488164	.	+	.	ID=gene4115;Name=Y_RS20640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20640;old_locus_tag=y4046
NC_004088.1	Protein Homology	CDS	4487406	4488164	.	+	0	ID=cds4010;Parent=gene4115;Dbxref=Genbank:WP_002209584.1;Name=WP_002209584.1;gbkey=CDS;product=iron ABC transporter ATP-binding protein;protein_id=WP_002209584.1;transl_table=11
NC_004088.1	RefSeq	gene	4488161	4488661	.	-	.	ID=gene4116;Name=Y_RS20645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20645;old_locus_tag=y4047
NC_004088.1	Protein Homology	CDS	4488161	4488661	.	-	0	ID=cds4011;Parent=gene4116;Dbxref=Genbank:WP_002214364.1;Name=WP_002214364.1;gbkey=CDS;product=toxin Fic;protein_id=WP_002214364.1;transl_table=11
NC_004088.1	RefSeq	gene	4488897	4489082	.	-	.	ID=gene4117;Name=Y_RS20650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20650;old_locus_tag=y4048
NC_004088.1	Protein Homology	CDS	4488897	4489082	.	-	0	ID=cds4012;Parent=gene4117;Dbxref=Genbank:WP_002214362.1;Name=WP_002214362.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_002214362.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4489469	4489724	.	+	.	ID=id494;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4490014	4490376	.	+	.	ID=gene4118;Name=Y_RS20655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20655;old_locus_tag=y4049
NC_004088.1	Protein Homology	CDS	4490014	4490376	.	+	0	ID=cds4013;Parent=gene4118;Dbxref=Genbank:WP_002209585.1;Name=WP_002209585.1;gbkey=CDS;product=2-hydroxyacid dehydrogenase;protein_id=WP_002209585.1;transl_table=11
NC_004088.1	RefSeq	gene	4490638	4491054	.	+	.	ID=gene4119;Name=Y_RS20660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20660;old_locus_tag=y4050
NC_004088.1	Protein Homology	CDS	4490638	4491054	.	+	0	ID=cds4014;Parent=gene4119;Dbxref=Genbank:WP_002414078.1;Name=WP_002414078.1;gbkey=CDS;product=transposase;protein_id=WP_002414078.1;transl_table=11
NC_004088.1	RefSeq	gene	4491054	4491347	.	+	.	ID=gene4120;Name=Y_RS20665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20665
NC_004088.1	Protein Homology	CDS	4491054	4491347	.	+	0	ID=cds4015;Parent=gene4120;Dbxref=Genbank:WP_002361323.1;Name=WP_002361323.1;gbkey=CDS;product=transposase;protein_id=WP_002361323.1;transl_table=11
NC_004088.1	RefSeq	gene	4491521	4491766	.	+	.	ID=gene4121;Name=Y_RS20670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20670
NC_004088.1	Protein Homology	CDS	4491521	4491766	.	+	0	ID=cds4016;Parent=gene4121;Dbxref=Genbank:WP_002214358.1;Name=WP_002214358.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214358.1;transl_table=11
NC_004088.1	RefSeq	gene	4492034	4493413	.	-	.	ID=gene4122;Name=Y_RS20675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20675;old_locus_tag=y4051
NC_004088.1	Protein Homology	CDS	4492034	4493413	.	-	0	ID=cds4017;Parent=gene4122;Dbxref=Genbank:WP_002209586.1;Name=WP_002209586.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209586.1;transl_table=11
NC_004088.1	RefSeq	gene	4493400	4494593	.	-	.	ID=gene4123;Name=Y_RS20680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20680;old_locus_tag=y4052
NC_004088.1	Protein Homology	CDS	4493400	4494593	.	-	0	ID=cds4018;Parent=gene4123;Dbxref=Genbank:WP_002209587.1;Name=WP_002209587.1;gbkey=CDS;product=integrase;protein_id=WP_002209587.1;transl_table=11
NC_004088.1	RefSeq	gene	4494979	4496172	.	-	.	ID=gene4124;Name=Y_RS20685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20685;old_locus_tag=y4053
NC_004088.1	Protein Homology	CDS	4494979	4496172	.	-	0	ID=cds4019;Parent=gene4124;Dbxref=Genbank:WP_002209588.1;Name=WP_002209588.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_002209588.1;transl_table=11
NC_004088.1	RefSeq	gene	4496262	4497446	.	-	.	ID=gene4125;Name=Y_RS20690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20690;old_locus_tag=y4054
NC_004088.1	Protein Homology	CDS	4496262	4497446	.	-	0	ID=cds4020;Parent=gene4125;Dbxref=Genbank:WP_002209589.1;Name=WP_002209589.1;gbkey=CDS;product=xylose ABC transporter permease;protein_id=WP_002209589.1;transl_table=11
NC_004088.1	RefSeq	gene	4497433	4498965	.	-	.	ID=gene4126;Name=Y_RS20695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20695;old_locus_tag=y4055
NC_004088.1	Protein Homology	CDS	4497433	4498965	.	-	0	ID=cds4021;Parent=gene4126;Dbxref=Genbank:WP_002209590.1;Name=WP_002209590.1;Note=with XylFH is part of the high affinity xylose ABC transporter;gbkey=CDS;product=xylose import ATP-binding protein XylG;protein_id=WP_002209590.1;transl_table=11
NC_004088.1	RefSeq	gene	4499173	4500168	.	-	.	ID=gene4127;Name=xylF;gbkey=Gene;gene=xylF;gene_biotype=protein_coding;locus_tag=Y_RS20700;old_locus_tag=y4056
NC_004088.1	Protein Homology	CDS	4499173	4500168	.	-	0	ID=cds4022;Parent=gene4127;Dbxref=Genbank:WP_002209591.1;Name=WP_002209591.1;Note=periplasmic substrate-binding component of the ATP-dependent xylose transport system%3B high affinity;gbkey=CDS;gene=xylF;product=xylose ABC transporter substrate-binding protein;protein_id=WP_002209591.1;transl_table=11
NC_004088.1	RefSeq	gene	4500631	4501950	.	+	.	ID=gene4128;Name=Y_RS20705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20705;old_locus_tag=y4057
NC_004088.1	Protein Homology	CDS	4500631	4501950	.	+	0	ID=cds4023;Parent=gene4128;Dbxref=Genbank:WP_002209593.1;Name=WP_002209593.1;Note=catalyzes the interconversion of D-xylose to D-xylulose;gbkey=CDS;product=xylose isomerase;protein_id=WP_002209593.1;transl_table=11
NC_004088.1	RefSeq	gene	4502074	4503528	.	+	.	ID=gene4129;Name=Y_RS20710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20710;old_locus_tag=y4058
NC_004088.1	Protein Homology	CDS	4502074	4503528	.	+	0	ID=cds4024;Parent=gene4129;Dbxref=Genbank:WP_002231670.1;Name=WP_002231670.1;Note=catalyzes the formation of D-xylulose-5-phosphate fro D-xylulose;gbkey=CDS;product=xylulokinase;protein_id=WP_002231670.1;transl_table=11
NC_004088.1	RefSeq	gene	4503646	4504632	.	-	.	ID=gene4130;Name=Y_RS20715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20715;old_locus_tag=y4059
NC_004088.1	Protein Homology	CDS	4503646	4504632	.	-	0	ID=cds4025;Parent=gene4130;Dbxref=Genbank:WP_002209595.1;Name=WP_002209595.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209595.1;transl_table=11
NC_004088.1	RefSeq	gene	4504671	4505438	.	-	.	ID=gene4131;Name=Y_RS20720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20720;old_locus_tag=y4060
NC_004088.1	Protein Homology	CDS	4504671	4505438	.	-	0	ID=cds4026;Parent=gene4131;Dbxref=Genbank:WP_002209596.1;Name=WP_002209596.1;gbkey=CDS;product=fimbrial chaperone protein StdC;protein_id=WP_002209596.1;transl_table=11
NC_004088.1	RefSeq	gene	4505531	4508021	.	-	.	ID=gene4132;Name=Y_RS20730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS20730;old_locus_tag=y4062;pseudo=true
NC_004088.1	Protein Homology	CDS	4505531	4508021	.	-	0	ID=cds4027;Parent=gene4132;exception=annotated by transcript or proteomic data;gbkey=CDS;product=fimbrial protein;pseudo=true;transl_except=(pos:complement(4506179..4506181)%2Caa:Other);transl_table=11
NC_004088.1	RefSeq	gene	4508097	4508654	.	-	.	ID=gene4133;Name=Y_RS20735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20735;old_locus_tag=y4063
NC_004088.1	Protein Homology	CDS	4508097	4508654	.	-	0	ID=cds4028;Parent=gene4133;Dbxref=Genbank:WP_002209597.1;Name=WP_002209597.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_002209597.1;transl_table=11
NC_004088.1	RefSeq	gene	4509536	4510528	.	-	.	ID=gene4134;Name=Y_RS20740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20740;old_locus_tag=y4064
NC_004088.1	Protein Homology	CDS	4509536	4510528	.	-	0	ID=cds4029;Parent=gene4134;Dbxref=Genbank:WP_002209600.1;Name=WP_002209600.1;Note=involved in enterobacterial common antigen biosynthesis%3B catalyzes the addition of O-acetyl groups to the N-acetyl-D-glucosamine residues of the trisaccharide repeat units of the enterobacterial common antigen;gbkey=CDS;product=O-acetyltransferase;protein_id=WP_002209600.1;transl_table=11
NC_004088.1	RefSeq	gene	4510525	4510725	.	-	.	ID=gene4135;Name=Y_RS20745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20745
NC_004088.1	Protein Homology	CDS	4510525	4510725	.	-	0	ID=cds4030;Parent=gene4135;Dbxref=Genbank:WP_002209601.1;Name=WP_002209601.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209601.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4510760	4512492	.	+	.	ID=id495;gbkey=repeat_region
NC_004088.1	RefSeq	region	4510826	4512276	.	+	.	ID=id496;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4510891	4511406	.	+	.	ID=gene4136;Name=Y_RS20750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20750
NC_004088.1	Protein Homology	CDS	4510891	4511406	.	+	0	ID=cds4031;Parent=gene4136;Dbxref=Genbank:WP_002209258.1;Name=WP_002209258.1;gbkey=CDS;product=transposase;protein_id=WP_002209258.1;transl_table=11
NC_004088.1	RefSeq	gene	4511460	4512245	.	+	.	ID=gene4137;Name=Y_RS20755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20755;old_locus_tag=y4066
NC_004088.1	Protein Homology	CDS	4511460	4512245	.	+	0	ID=cds4032;Parent=gene4137;Dbxref=Genbank:WP_002208932.1;Name=WP_002208932.1;gbkey=CDS;product=integrase;protein_id=WP_002208932.1;transl_table=11
NC_004088.1	RefSeq	gene	4512718	4513947	.	+	.	ID=gene4138;Name=Y_RS20760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20760;old_locus_tag=y4067
NC_004088.1	Protein Homology	CDS	4512718	4513947	.	+	0	ID=cds4033;Parent=gene4138;Dbxref=Genbank:WP_002215753.1;Name=WP_002215753.1;gbkey=CDS;product=multidrug transporter MdfA;protein_id=WP_002215753.1;transl_table=11
NC_004088.1	RefSeq	gene	4514096	4514299	.	-	.	ID=gene4139;Name=Y_RS20765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20765;old_locus_tag=y4068
NC_004088.1	Protein Homology	CDS	4514096	4514299	.	-	0	ID=cds4034;Parent=gene4139;Dbxref=Genbank:WP_002209605.1;Name=WP_002209605.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209605.1;transl_table=11
NC_004088.1	RefSeq	gene	4514420	4514578	.	+	.	ID=gene4140;Name=Y_RS20770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20770
NC_004088.1	Protein Homology	CDS	4514420	4514578	.	+	0	ID=cds4035;Parent=gene4140;Dbxref=Genbank:WP_002215752.1;Name=WP_002215752.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215752.1;transl_table=11
NC_004088.1	RefSeq	gene	4514657	4515238	.	+	.	ID=gene4141;Name=Y_RS20775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20775;old_locus_tag=y4069
NC_004088.1	Protein Homology	CDS	4514657	4515238	.	+	0	ID=cds4036;Parent=gene4141;Dbxref=Genbank:WP_002215751.1;Name=WP_002215751.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215751.1;transl_table=11
NC_004088.1	RefSeq	gene	4515252	4515584	.	-	.	ID=gene4142;Name=Y_RS20780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20780;old_locus_tag=y4070
NC_004088.1	Protein Homology	CDS	4515252	4515584	.	-	0	ID=cds4037;Parent=gene4142;Dbxref=Genbank:WP_002215750.1;Name=WP_002215750.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215750.1;transl_table=11
NC_004088.1	RefSeq	gene	4515873	4516337	.	+	.	ID=gene4143;Name=Y_RS20785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20785;old_locus_tag=y4071
NC_004088.1	Protein Homology	CDS	4515873	4516337	.	+	0	ID=cds4038;Parent=gene4143;Dbxref=Genbank:WP_002209607.1;Name=WP_002209607.1;gbkey=CDS;product=transposase;protein_id=WP_002209607.1;transl_table=11
NC_004088.1	RefSeq	gene	4516344	4518296	.	-	.	ID=gene4144;Name=Y_RS20790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20790;old_locus_tag=y4073
NC_004088.1	Protein Homology	CDS	4516344	4518296	.	-	0	ID=cds4039;Parent=gene4144;Dbxref=Genbank:WP_002223796.1;Name=WP_002223796.1;gbkey=CDS;product=selenocysteine-specific translation elongation factor;protein_id=WP_002223796.1;transl_table=11
NC_004088.1	RefSeq	gene	4518293	4519681	.	-	.	ID=gene4145;Name=Y_RS20795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20795;old_locus_tag=y4074
NC_004088.1	Protein Homology	CDS	4518293	4519681	.	-	0	ID=cds4040;Parent=gene4145;Dbxref=Genbank:WP_002209608.1;Name=WP_002209608.1;Note=catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis;gbkey=CDS;product=L-seryl-tRNA(Sec) selenium transferase;protein_id=WP_002209608.1;transl_table=11
NC_004088.1	RefSeq	gene	4519865	4520794	.	-	.	ID=gene4146;Name=Y_RS20800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20800;old_locus_tag=y4075
NC_004088.1	Protein Homology	CDS	4519865	4520794	.	-	0	ID=cds4041;Parent=gene4146;Dbxref=Genbank:WP_002209609.1;Name=WP_002209609.1;Note=required for the formation of active formate dehydrogenase;gbkey=CDS;product=protein FdhE;protein_id=WP_002209609.1;transl_table=11
NC_004088.1	RefSeq	gene	4520794	4521468	.	-	.	ID=gene4147;Name=Y_RS20805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20805;old_locus_tag=y4076
NC_004088.1	Protein Homology	CDS	4520794	4521468	.	-	0	ID=cds4042;Parent=gene4147;Dbxref=Genbank:WP_002209610.1;Name=WP_002209610.1;Note=cytochrome b556(FDO) component%3B heme containing;gbkey=CDS;product=formate dehydrogenase-N subunit gamma;protein_id=WP_002209610.1;transl_table=11
NC_004088.1	RefSeq	gene	4521465	4522436	.	-	.	ID=gene4148;Name=Y_RS20810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20810;old_locus_tag=y4077
NC_004088.1	Protein Homology	CDS	4521465	4522436	.	-	0	ID=cds4043;Parent=gene4148;Dbxref=Genbank:WP_002209611.1;Name=WP_002209611.1;Note=beta subunit%3B involved in the use of formate as an electron donor during aerobic respiration%3B acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit);gbkey=CDS;product=formate dehydrogenase-N subunit beta;protein_id=WP_002209611.1;transl_table=11
NC_004088.1	RefSeq	gene	4522449	4524860	.	-	.	ID=gene4149;Name=Y_RS20815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20815
NC_004088.1	Protein Homology	CDS	4522449	4524860	.	-	0	ID=cds4044;Parent=gene4149;Dbxref=Genbank:WP_002231683.1;Name=WP_002231683.1;gbkey=CDS;product=formate dehydrogenase subunit alpha;protein_id=WP_002231683.1;transl_table=11
NC_004088.1	RefSeq	gene	4524909	4525496	.	-	.	ID=gene4150;Name=Y_RS20820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20820
NC_004088.1	Protein Homology	CDS	4524909	4525496	.	-	0	ID=cds4045;Parent=gene4150;Dbxref=Genbank:WP_002231685.1;Name=WP_002231685.1;gbkey=CDS;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_002231685.1;transl_table=11
NC_004088.1	RefSeq	gene	4525693	4526517	.	+	.	ID=gene4151;Name=Y_RS20825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20825;old_locus_tag=y4079
NC_004088.1	Protein Homology	CDS	4525693	4526517	.	+	0	ID=cds4046;Parent=gene4151;Dbxref=Genbank:WP_002209612.1;Name=WP_002209612.1;gbkey=CDS;product=protein FdhD;protein_id=WP_002209612.1;transl_table=11
NC_004088.1	RefSeq	gene	4526953	4527576	.	+	.	ID=gene4152;Name=Y_RS20830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20830;old_locus_tag=y4080
NC_004088.1	Protein Homology	CDS	4526953	4527576	.	+	0	ID=cds4047;Parent=gene4152;Dbxref=Genbank:WP_002209614.1;Name=WP_002209614.1;Note=SodA%3B manganese binding%3B only present under aerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase;protein_id=WP_002209614.1;transl_table=11
NC_004088.1	RefSeq	gene	4527920	4529869	.	+	.	ID=gene4153;Name=Y_RS20835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20835;old_locus_tag=y4081
NC_004088.1	Protein Homology	CDS	4527920	4529869	.	+	0	ID=cds4048;Parent=gene4153;Dbxref=Genbank:WP_002209615.1;Name=WP_002209615.1;gbkey=CDS;product=chemotaxis protein;protein_id=WP_002209615.1;transl_table=11
NC_004088.1	RefSeq	gene	4530059	4530391	.	+	.	ID=gene4154;Name=Y_RS20840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20840;old_locus_tag=y4082
NC_004088.1	Protein Homology	CDS	4530059	4530391	.	+	0	ID=cds4049;Parent=gene4154;Dbxref=Genbank:WP_002217114.1;Name=WP_002217114.1;gbkey=CDS;product=membrane protein;protein_id=WP_002217114.1;transl_table=11
NC_004088.1	RefSeq	gene	4530923	4531399	.	+	.	ID=gene4155;Name=Y_RS20845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20845;old_locus_tag=y4083
NC_004088.1	Protein Homology	CDS	4530923	4531399	.	+	0	ID=cds4050;Parent=gene4155;Dbxref=Genbank:WP_002209617.1;Name=WP_002209617.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209617.1;transl_table=11
NC_004088.1	RefSeq	gene	4531568	4531924	.	-	.	ID=gene4156;Name=Y_RS20850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20850;old_locus_tag=y4084
NC_004088.1	Protein Homology	CDS	4531568	4531924	.	-	0	ID=cds4051;Parent=gene4156;Dbxref=Genbank:WP_002209618.1;Name=WP_002209618.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209618.1;transl_table=11
NC_004088.1	RefSeq	gene	4532173	4532727	.	-	.	ID=gene4157;Name=Y_RS20855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20855;old_locus_tag=y4085
NC_004088.1	Protein Homology	CDS	4532173	4532727	.	-	0	ID=cds4052;Parent=gene4157;Dbxref=Genbank:WP_002209619.1;Name=WP_002209619.1;gbkey=CDS;product=mannitol repressor protein;protein_id=WP_002209619.1;transl_table=11
NC_004088.1	RefSeq	gene	4532934	4534097	.	-	.	ID=gene4158;Name=Y_RS20860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20860;old_locus_tag=y4086
NC_004088.1	Protein Homology	CDS	4532934	4534097	.	-	0	ID=cds4053;Parent=gene4158;Dbxref=Genbank:WP_002209620.1;Name=WP_002209620.1;gbkey=CDS;product=mannitol-1-phosphate 5-dehydrogenase;protein_id=WP_002209620.1;transl_table=11
NC_004088.1	RefSeq	gene	4534234	4536165	.	-	.	ID=gene4159;Name=Y_RS20865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20865;old_locus_tag=y4087
NC_004088.1	Protein Homology	CDS	4534234	4536165	.	-	0	ID=cds4054;Parent=gene4159;Dbxref=Genbank:WP_002209621.1;Name=WP_002209621.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIC forms the translocation channel and contains the specific substrate-binding site%3B subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit%3B subunit IIB transfers the phosphoryl group to the substrate;gbkey=CDS;product=PTS mannitol transporter subunit IIABC;protein_id=WP_002209621.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4536607	4536781	.	+	.	ID=id497;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4536815	4537534	.	-	.	ID=gene4160;Name=Y_RS20870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20870;old_locus_tag=y4088
NC_004088.1	Protein Homology	CDS	4536815	4537534	.	-	0	ID=cds4055;Parent=gene4160;Dbxref=Genbank:WP_002209622.1;Name=WP_002209622.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209622.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4537786	4537960	.	+	.	ID=id498;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4538007	4540076	.	-	.	ID=gene4161;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=Y_RS20875;old_locus_tag=y4089
NC_004088.1	Protein Homology	CDS	4538007	4540076	.	-	0	ID=cds4056;Parent=gene4161;Dbxref=Genbank:WP_002209623.1;Name=WP_002209623.1;Note=glycine--tRNA ligase beta chain%3B glyS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;gene=glyS;product=glycine--tRNA ligase subunit beta;protein_id=WP_002209623.1;transl_table=11
NC_004088.1	RefSeq	gene	4540086	4541000	.	-	.	ID=gene4162;Name=Y_RS20880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20880;old_locus_tag=y4090
NC_004088.1	Protein Homology	CDS	4540086	4541000	.	-	0	ID=cds4057;Parent=gene4162;Dbxref=Genbank:WP_002209624.1;Name=WP_002209624.1;gbkey=CDS;product=glycine--tRNA ligase subunit alpha;protein_id=WP_002209624.1;transl_table=11
NC_004088.1	RefSeq	gene	4541328	4541900	.	+	.	ID=gene4163;Name=Y_RS20885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20885;old_locus_tag=y4091
NC_004088.1	Protein Homology	CDS	4541328	4541900	.	+	0	ID=cds4058;Parent=gene4163;Dbxref=Genbank:WP_002223790.1;Name=WP_002223790.1;gbkey=CDS;product=3-methyladenine DNA glycosylase;protein_id=WP_002223790.1;transl_table=11
NC_004088.1	RefSeq	gene	4541897	4542352	.	+	.	ID=gene4164;Name=Y_RS20890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20890;old_locus_tag=y4092
NC_004088.1	Protein Homology	CDS	4541897	4542352	.	+	0	ID=cds4059;Parent=gene4164;Dbxref=Genbank:WP_002209627.1;Name=WP_002209627.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_002209627.1;transl_table=11
NC_004088.1	RefSeq	gene	4542710	4543369	.	+	.	ID=gene4165;Name=Y_RS20895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20895;old_locus_tag=y4093
NC_004088.1	Protein Homology	CDS	4542710	4543369	.	+	0	ID=cds4060;Parent=gene4165;Dbxref=Genbank:WP_002209628.1;Name=WP_002209628.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209628.1;transl_table=11
NC_004088.1	RefSeq	gene	4543500	4544144	.	-	.	ID=gene4166;Name=Y_RS20900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20900;old_locus_tag=y4095
NC_004088.1	Protein Homology	CDS	4543500	4544144	.	-	0	ID=cds4061;Parent=gene4166;Dbxref=Genbank:WP_002209629.1;Name=WP_002209629.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002209629.1;transl_table=11
NC_004088.1	RefSeq	gene	4544663	4545643	.	+	.	ID=gene4167;Name=Y_RS20905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20905;old_locus_tag=y4096
NC_004088.1	Protein Homology	CDS	4544663	4545643	.	+	0	ID=cds4062;Parent=gene4167;Dbxref=Genbank:WP_002223788.1;Name=WP_002223788.1;Note=catalyzes the formation of glycolate from glyoxylate and glycerate from hydroxypyruvate;gbkey=CDS;product=glyoxylate/hydroxypyruvate reductase B;protein_id=WP_002223788.1;transl_table=11
NC_004088.1	RefSeq	gene	4545932	4547995	.	+	.	ID=gene4168;Name=malS;gbkey=Gene;gene=malS;gene_biotype=protein_coding;locus_tag=Y_RS20910;old_locus_tag=y4097
NC_004088.1	Protein Homology	CDS	4545932	4547995	.	+	0	ID=cds4063;Parent=gene4168;Dbxref=Genbank:WP_002209631.1;Name=WP_002209631.1;Note=periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB%3B hydrolyzes alpha-(1%2C4) glycosidic linkages%3B contains internal disulfide bonds;gbkey=CDS;gene=malS;product=alpha-amylase;protein_id=WP_002209631.1;transl_table=11
NC_004088.1	RefSeq	gene	4548410	4548853	.	+	.	ID=gene4169;Name=Y_RS20915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20915;old_locus_tag=y4098
NC_004088.1	Protein Homology	CDS	4548410	4548853	.	+	0	ID=cds4064;Parent=gene4169;Dbxref=Genbank:WP_002209632.1;Name=WP_002209632.1;gbkey=CDS;product=membrane protein;protein_id=WP_002209632.1;transl_table=11
NC_004088.1	RefSeq	gene	4549308	4550573	.	+	.	ID=gene4170;Name=avtA;gbkey=Gene;gene=avtA;gene_biotype=protein_coding;locus_tag=Y_RS20920;old_locus_tag=y4099
NC_004088.1	Protein Homology	CDS	4549308	4550573	.	+	0	ID=cds4065;Parent=gene4170;Dbxref=Genbank:WP_002228155.1;Name=WP_002228155.1;Note=transaminase C%3B catalyzes transamination of alanine%2C valine%2C and 2-aminobutyrate with their respective 2-keto acids%3B also catalyzes terminal step in valine biosynthesis;gbkey=CDS;gene=avtA;product=valine--pyruvate aminotransferase;protein_id=WP_002228155.1;transl_table=11
NC_004088.1	RefSeq	gene	4550686	4552344	.	-	.	ID=gene4171;Name=Y_RS20925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20925;old_locus_tag=y4100
NC_004088.1	Protein Homology	CDS	4550686	4552344	.	-	0	ID=cds4066;Parent=gene4171;Dbxref=Genbank:WP_002209634.1;Name=WP_002209634.1;gbkey=CDS;product=transporter;protein_id=WP_002209634.1;transl_table=11
NC_004088.1	RefSeq	gene	4552717	4553181	.	-	.	ID=gene4172;Name=Y_RS20930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20930;old_locus_tag=y4101
NC_004088.1	Protein Homology	CDS	4552717	4553181	.	-	0	ID=cds4067;Parent=gene4172;Dbxref=Genbank:WP_002209635.1;Name=WP_002209635.1;gbkey=CDS;product=heat-shock protein IbpB;protein_id=WP_002209635.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	4553226	4553244	.	-	.	ID=id499;Dbxref=CollecTF:EXPSITE_00000dd0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y4101;gbkey=protein_bind
NC_004088.1	RefSeq	gene	4553462	4553875	.	-	.	ID=gene4173;Name=Y_RS20935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20935;old_locus_tag=y4102
NC_004088.1	Protein Homology	CDS	4553462	4553875	.	-	0	ID=cds4068;Parent=gene4173;Dbxref=Genbank:WP_002209636.1;Name=WP_002209636.1;Note=with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress;gbkey=CDS;product=heat-shock protein IbpA;protein_id=WP_002209636.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	4553888	4553906	.	-	.	ID=id500;Dbxref=CollecTF:EXPSITE_00000dc0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y4102;gbkey=protein_bind
NC_004088.1	RefSeq	gene	4554243	4554581	.	+	.	ID=gene4174;Name=Y_RS20940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20940;old_locus_tag=y4103
NC_004088.1	Protein Homology	CDS	4554243	4554581	.	+	0	ID=cds4069;Parent=gene4174;Dbxref=Genbank:WP_002209637.1;Name=WP_002209637.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209637.1;transl_table=11
NC_004088.1	RefSeq	gene	4554621	4554935	.	-	.	ID=gene4175;Name=Y_RS20945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20945
NC_004088.1	Protein Homology	CDS	4554621	4554935	.	-	0	ID=cds4070;Parent=gene4175;Dbxref=Genbank:WP_002228733.1;Name=WP_002228733.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228733.1;transl_table=11
NC_004088.1	RefSeq	gene	4554925	4555236	.	-	.	ID=gene4176;Name=Y_RS20950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20950
NC_004088.1	Protein Homology	CDS	4554925	4555236	.	-	0	ID=cds4071;Parent=gene4176;Dbxref=Genbank:WP_002228734.1;Name=WP_002228734.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228734.1;transl_table=11
NC_004088.1	RefSeq	gene	4555444	4556406	.	+	.	ID=gene4177;Name=Y_RS20955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20955;old_locus_tag=y4105
NC_004088.1	Protein Homology	CDS	4555444	4556406	.	+	0	ID=cds4072;Parent=gene4177;Dbxref=Genbank:WP_002209638.1;Name=WP_002209638.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002209638.1;transl_table=11
NC_004088.1	RefSeq	gene	4556400	4557353	.	+	.	ID=gene4178;Name=Y_RS20960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20960;old_locus_tag=y4106
NC_004088.1	Protein Homology	CDS	4556400	4557353	.	+	0	ID=cds4073;Parent=gene4178;Dbxref=Genbank:WP_002209639.1;Name=WP_002209639.1;Note=catalyzes the formation of L-proline from L-ornithine;gbkey=CDS;product=ornithine cyclodeaminase;protein_id=WP_002209639.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4557392	4559180	.	+	.	ID=id501;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4557399	4558067	.	+	.	ID=gene4179;Name=Y_RS20965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20965;old_locus_tag=y4107
NC_004088.1	Protein Homology	CDS	4557399	4558067	.	+	0	ID=cds4074;Parent=gene4179;Dbxref=Genbank:WP_002228735.1;Name=WP_002228735.1;gbkey=CDS;product=transposase;protein_id=WP_002228735.1;transl_table=11
NC_004088.1	RefSeq	region	4557487	4558937	.	+	.	ID=id502;Note=insertion element;gbkey=mobile_element
NC_004088.1	RefSeq	gene	4558121	4558906	.	+	.	ID=gene4180;Name=Y_RS20970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20970;old_locus_tag=y4108
NC_004088.1	Protein Homology	CDS	4558121	4558906	.	+	0	ID=cds4075;Parent=gene4180;Dbxref=Genbank:WP_002208932.1;Name=WP_002208932.1;gbkey=CDS;product=integrase;protein_id=WP_002208932.1;transl_table=11
NC_004088.1	RefSeq	gene	4559297	4560106	.	-	.	ID=gene4181;Name=Y_RS20975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20975;old_locus_tag=y4109
NC_004088.1	Protein Homology	CDS	4559297	4560106	.	-	0	ID=cds4076;Parent=gene4181;Dbxref=Genbank:WP_002209641.1;Name=WP_002209641.1;Note=YidA%3B catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate)%2C mannose 1-phosphate and p-nitrophenyl phosphate%3B hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form%3B member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins;gbkey=CDS;product=sugar phosphate phosphatase;protein_id=WP_002209641.1;transl_table=11
NC_004088.1	RefSeq	gene	4560322	4562736	.	-	.	ID=gene4182;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=Y_RS20980;old_locus_tag=y4110
NC_004088.1	Protein Homology	CDS	4560322	4562736	.	-	0	ID=cds4077;Parent=gene4182;Dbxref=Genbank:WP_002209642.1;Name=WP_002209642.1;Note=negatively supercoils closed circular double-stranded DNA;gbkey=CDS;gene=gyrB;product=DNA gyrase subunit B;protein_id=WP_002209642.1;transl_table=11
NC_004088.1	RefSeq	gene	4562756	4563841	.	-	.	ID=gene4183;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=Y_RS20985;old_locus_tag=y4111
NC_004088.1	Protein Homology	CDS	4562756	4563841	.	-	0	ID=cds4078;Parent=gene4183;Dbxref=Genbank:WP_002209643.1;Name=WP_002209643.1;Note=Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA;gbkey=CDS;gene=recF;product=DNA recombination protein RecF;protein_id=WP_002209643.1;transl_table=11
NC_004088.1	RefSeq	gene	4563840	4564010	.	+	.	ID=gene4184;Name=Y_RS20990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20990
NC_004088.1	Protein Homology	CDS	4563840	4564010	.	+	0	ID=cds4079;Parent=gene4184;Dbxref=Genbank:WP_002218418.1;Name=WP_002218418.1;gbkey=CDS;product=recombinase F;protein_id=WP_002218418.1;transl_table=11
NC_004088.1	RefSeq	gene	4564014	4565114	.	-	.	ID=gene4185;Name=Y_RS20995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS20995;old_locus_tag=y4112
NC_004088.1	Protein Homology	CDS	4564014	4565114	.	-	0	ID=cds4080;Parent=gene4185;Dbxref=Genbank:WP_002209645.1;Name=WP_002209645.1;Note=binds the polymerase to DNA and acts as a sliding clamp;gbkey=CDS;product=DNA polymerase III subunit beta;protein_id=WP_002209645.1;transl_table=11
NC_004088.1	RefSeq	gene	4565119	4566507	.	-	.	ID=gene4186;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=Y_RS21000;old_locus_tag=y4113
NC_004088.1	Protein Homology	CDS	4565119	4566507	.	-	0	ID=cds4081;Parent=gene4186;Dbxref=Genbank:WP_002220732.1;Name=WP_002220732.1;Note=binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself.;gbkey=CDS;gene=dnaA;product=chromosomal replication initiator protein DnaA;protein_id=WP_002220732.1;transl_table=11
NC_004088.1	RefSeq	gene	4567217	4567357	.	+	.	ID=gene4187;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=Y_RS21005;old_locus_tag=y4114
NC_004088.1	Protein Homology	CDS	4567217	4567357	.	+	0	ID=cds4082;Parent=gene4187;Dbxref=Genbank:WP_002220736.1;Name=WP_002220736.1;Note=in Escherichia coli transcription of this gene is enhanced by polyamines;gbkey=CDS;gene=rpmH;product=50S ribosomal protein L34;protein_id=WP_002220736.1;transl_table=11
NC_004088.1	RefSeq	gene	4567376	4567735	.	+	.	ID=gene4188;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=Y_RS21010;old_locus_tag=y4115
NC_004088.1	Protein Homology	CDS	4567376	4567735	.	+	0	ID=cds4083;Parent=gene4188;Dbxref=Genbank:WP_002228153.1;Name=WP_002228153.1;Note=protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates;gbkey=CDS;gene=rnpA;product=ribonuclease P protein component;protein_id=WP_002228153.1;transl_table=11
NC_004088.1	RefSeq	gene	4567959	4569599	.	+	.	ID=gene4189;Name=Y_RS21015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21015;old_locus_tag=y4117
NC_004088.1	Protein Homology	CDS	4567959	4569599	.	+	0	ID=cds4084;Parent=gene4189;Dbxref=Genbank:WP_002220739.1;Name=WP_002220739.1;Note=functions to insert inner membrane proteins into the IM in Escherichia coli%3B interacts with transmembrane segments%3B functions in both Sec-dependent and -independent membrane insertion%3B similar to Oxa1p in mitochondria;gbkey=CDS;product=protein translocase component YidC;protein_id=WP_002220739.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	4568545	4568563	.	-	.	ID=id503;Dbxref=CollecTF:EXPSITE_00000d80;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y4116;gbkey=protein_bind
NC_004088.1	RefSeq	gene	4569742	4571106	.	+	.	ID=gene4190;Name=trmE;gbkey=Gene;gene=trmE;gene_biotype=protein_coding;gene_synonym=mnmE,thdF;locus_tag=Y_RS21020;old_locus_tag=y4118
NC_004088.1	Protein Homology	CDS	4569742	4571106	.	+	0	ID=cds4085;Parent=gene4190;Dbxref=Genbank:WP_002220740.1;Name=WP_002220740.1;Note=in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE;gbkey=CDS;gene=trmE;product=tRNA modification GTPase MnmE;protein_id=WP_002220740.1;transl_table=11
NC_004088.1	RefSeq	gene	4571292	4572491	.	+	.	ID=gene4191;Name=Y_RS21025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21025;old_locus_tag=y4119
NC_004088.1	Protein Homology	CDS	4571292	4572491	.	+	0	ID=cds4086;Parent=gene4191;Dbxref=Genbank:WP_002215588.1;Name=WP_002215588.1;Note=enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity;gbkey=CDS;product=trans-2-enoyl-CoA reductase;protein_id=WP_002215588.1;transl_table=11
NC_004088.1	RefSeq	gene	4572959	4573240	.	-	.	ID=gene4192;Name=Y_RS21030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21030
NC_004088.1	Protein Homology	CDS	4572959	4573240	.	-	0	ID=cds4087;Parent=gene4192;Dbxref=Genbank:WP_002215583.1;Name=WP_002215583.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215583.1;transl_table=11
NC_004088.1	RefSeq	gene	4573302	4573922	.	-	.	ID=gene4193;Name=Y_RS21035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21035;old_locus_tag=y4120
NC_004088.1	Protein Homology	CDS	4573302	4573922	.	-	0	ID=cds4088;Parent=gene4193;Dbxref=Genbank:WP_002215581.1;Name=WP_002215581.1;gbkey=CDS;product=membrane protein;protein_id=WP_002215581.1;transl_table=11
NC_004088.1	RefSeq	gene	4574467	4575795	.	-	.	ID=gene4194;Name=Y_RS21040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21040;old_locus_tag=y4121
NC_004088.1	Protein Homology	CDS	4574467	4575795	.	-	0	ID=cds4089;Parent=gene4194;Dbxref=Genbank:WP_002215577.1;Name=WP_002215577.1;Note=involved in the transport or adenine;gbkey=CDS;product=adenine permease;protein_id=WP_002215577.1;transl_table=11
NC_004088.1	RefSeq	repeat_region	4576014	4576186	.	+	.	ID=id504;gbkey=repeat_region
NC_004088.1	RefSeq	gene	4576288	4576956	.	+	.	ID=gene4195;Name=Y_RS21045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21045;old_locus_tag=y4122
NC_004088.1	Protein Homology	CDS	4576288	4576956	.	+	0	ID=cds4090;Parent=gene4195;Dbxref=Genbank:WP_002215575.1;Name=WP_002215575.1;gbkey=CDS;product=6-phosphogluconate phosphatase;protein_id=WP_002215575.1;transl_table=11
NC_004088.1	RefSeq	gene	4576991	4577746	.	-	.	ID=gene4196;Name=Y_RS21050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21050;old_locus_tag=y4123
NC_004088.1	Protein Homology	CDS	4576991	4577746	.	-	0	ID=cds4091;Parent=gene4196;Dbxref=Genbank:WP_002231704.1;Name=WP_002231704.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002231704.1;transl_table=11
NC_004088.1	RefSeq	gene	4577748	4578485	.	-	.	ID=gene4197;Name=Y_RS21055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21055;old_locus_tag=y4124
NC_004088.1	Protein Homology	CDS	4577748	4578485	.	-	0	ID=cds4092;Parent=gene4197;Dbxref=Genbank:WP_002215571.1;Name=WP_002215571.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_002215571.1;transl_table=11
NC_004088.1	RefSeq	gene	4578668	4579522	.	-	.	ID=gene4198;Name=Y_RS21060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21060;old_locus_tag=y4125
NC_004088.1	Protein Homology	CDS	4578668	4579522	.	-	0	ID=cds4093;Parent=gene4198;Dbxref=Genbank:WP_002215568.1;Name=WP_002215568.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_002215568.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	4579698	4579716	.	+	.	ID=id505;Dbxref=CollecTF:EXPSITE_00000d90;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y4125;gbkey=protein_bind
NC_004088.1	RefSeq	gene	4579742	4580413	.	-	.	ID=gene4199;Name=Y_RS21065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21065;old_locus_tag=y4126
NC_004088.1	Protein Homology	CDS	4579742	4580413	.	-	0	ID=cds4094;Parent=gene4199;Dbxref=Genbank:WP_002228151.1;Name=WP_002228151.1;gbkey=CDS;product=membrane protein;protein_id=WP_002228151.1;transl_table=11
NC_004088.1	RefSeq	protein_binding_site	4580599	4580617	.	-	.	ID=id506;Dbxref=CollecTF:EXPSITE_00000da0;Note=Transcription factor binding site for NP_669111.~Evidence of regulation for: y4126;gbkey=protein_bind
NC_004088.1	RefSeq	gene	4580709	4581431	.	-	.	ID=gene4200;Name=Y_RS21070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21070;old_locus_tag=y4127
NC_004088.1	Protein Homology	CDS	4580709	4581431	.	-	0	ID=cds4095;Parent=gene4200;Dbxref=Genbank:WP_002220747.1;Name=WP_002220747.1;Note=regulates several genes involved in high affinity phosphate uptake%3B under conditions of high phosphate concentrations downregulates the PHO regulon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002220747.1;transl_table=11
NC_004088.1	RefSeq	gene	4581519	4582295	.	-	.	ID=gene4201;Name=Y_RS21075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21075;old_locus_tag=y4128
NC_004088.1	Protein Homology	CDS	4581519	4582295	.	-	0	ID=cds4096;Parent=gene4201;Dbxref=Genbank:WP_002215562.1;Name=WP_002215562.1;gbkey=CDS;product=phosphate import ATP-binding protein PstB 2;protein_id=WP_002215562.1;transl_table=11
NC_004088.1	RefSeq	gene	4582376	4583263	.	-	.	ID=gene4202;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=Y_RS21080;old_locus_tag=y4129
NC_004088.1	Protein Homology	CDS	4582376	4583263	.	-	0	ID=cds4097;Parent=gene4202;Dbxref=Genbank:WP_002215560.1;Name=WP_002215560.1;Note=Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions;gbkey=CDS;gene=pstA;product=phosphate ABC transporter permease;protein_id=WP_002215560.1;transl_table=11
NC_004088.1	RefSeq	gene	4583265	4584221	.	-	.	ID=gene4203;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=Y_RS21085;old_locus_tag=y4130
NC_004088.1	Protein Homology	CDS	4583265	4584221	.	-	0	ID=cds4098;Parent=gene4203;Dbxref=Genbank:WP_002215558.1;Name=WP_002215558.1;Note=part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions;gbkey=CDS;gene=pstC;product=phosphate transporter permease subunit PstC;protein_id=WP_002215558.1;transl_table=11
NC_004088.1	RefSeq	gene	4584450	4585490	.	-	.	ID=gene4204;Name=Y_RS21090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21090;old_locus_tag=y4131
NC_004088.1	Protein Homology	CDS	4584450	4585490	.	-	0	ID=cds4099;Parent=gene4204;Dbxref=Genbank:WP_002215557.1;Name=WP_002215557.1;gbkey=CDS;product=phosphate ABC transporter substrate-binding protein;protein_id=WP_002215557.1;transl_table=11
NC_004088.1	RefSeq	gene	4585973	4587802	.	-	.	ID=gene4205;Name=Y_RS21095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21095;old_locus_tag=y4132
NC_004088.1	Protein Homology	CDS	4585973	4587802	.	-	0	ID=cds4100;Parent=gene4205;Dbxref=Genbank:WP_002215552.1;Name=WP_002215552.1;Note=Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source;gbkey=CDS;product=glutamine--fructose-6-phosphate aminotransferase [isomerizing];protein_id=WP_002215552.1;transl_table=11
NC_004088.1	RefSeq	gene	4588003	4589373	.	-	.	ID=gene4206;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=Y_RS21100;old_locus_tag=y4133
NC_004088.1	Protein Homology	CDS	4588003	4589373	.	-	0	ID=cds4101;Parent=gene4206;Dbxref=Genbank:WP_002215550.1;Name=WP_002215550.1;Note=forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis;gbkey=CDS;gene=glmU;product=bifunctional protein GlmU;protein_id=WP_002215550.1;transl_table=11
NC_004088.1	RefSeq	gene	4589994	4590416	.	-	.	ID=gene4207;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;locus_tag=Y_RS21105;old_locus_tag=y4134
NC_004088.1	Protein Homology	CDS	4589994	4590416	.	-	0	ID=cds4102;Parent=gene4207;Dbxref=Genbank:WP_002215546.1;Name=WP_002215546.1;Note=part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane;gbkey=CDS;gene=atpC;product=ATP synthase epsilon chain;protein_id=WP_002215546.1;transl_table=11
NC_004088.1	RefSeq	gene	4590438	4591820	.	-	.	ID=gene4208;Name=Y_RS21110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21110;old_locus_tag=y4135
NC_004088.1	Protein Homology	CDS	4590438	4591820	.	-	0	ID=cds4103;Parent=gene4208;Dbxref=Genbank:WP_002220753.1;Name=WP_002220753.1;gbkey=CDS;product=ATP synthase subunit beta;protein_id=WP_002220753.1;transl_table=11
NC_004088.1	RefSeq	gene	4591976	4592839	.	-	.	ID=gene4209;Name=Y_RS21115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21115;old_locus_tag=y4136
NC_004088.1	Protein Homology	CDS	4591976	4592839	.	-	0	ID=cds4104;Parent=gene4209;Dbxref=Genbank:WP_002220756.1;Name=WP_002220756.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit;gbkey=CDS;product=ATP synthase subunit gamma;protein_id=WP_002220756.1;transl_table=11
NC_004088.1	RefSeq	gene	4592901	4594442	.	-	.	ID=gene4210;Name=Y_RS21120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21120;old_locus_tag=y4137
NC_004088.1	Protein Homology	CDS	4592901	4594442	.	-	0	ID=cds4105;Parent=gene4210;Dbxref=Genbank:WP_002220758.1;Name=WP_002220758.1;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit;gbkey=CDS;product=ATP synthase subunit alpha;protein_id=WP_002220758.1;transl_table=11
NC_004088.1	RefSeq	gene	4594457	4594990	.	-	.	ID=gene4211;Name=Y_RS21125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21125;old_locus_tag=y4138
NC_004088.1	Protein Homology	CDS	4594457	4594990	.	-	0	ID=cds4106;Parent=gene4211;Dbxref=Genbank:WP_002220760.1;Name=WP_002220760.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane%3B the delta subunit is part of the catalytic core of the ATP synthase complex;gbkey=CDS;product=ATP synthase subunit delta;protein_id=WP_002220760.1;transl_table=11
NC_004088.1	RefSeq	gene	4595005	4595475	.	-	.	ID=gene4212;Name=Y_RS21130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21130;old_locus_tag=y4139
NC_004088.1	Protein Homology	CDS	4595005	4595475	.	-	0	ID=cds4107;Parent=gene4212;Dbxref=Genbank:WP_002220762.1;Name=WP_002220762.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.;gbkey=CDS;product=ATP synthase subunit b;protein_id=WP_002220762.1;transl_table=11
NC_004088.1	RefSeq	gene	4595537	4595776	.	-	.	ID=gene4213;Name=Y_RS21135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21135;old_locus_tag=y4140
NC_004088.1	Protein Homology	CDS	4595537	4595776	.	-	0	ID=cds4108;Parent=gene4213;Dbxref=Genbank:WP_000429386.1;Name=WP_000429386.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0;gbkey=CDS;product=ATP synthase subunit c;protein_id=WP_000429386.1;transl_table=11
NC_004088.1	RefSeq	gene	4595826	4596650	.	-	.	ID=gene4214;Name=Y_RS21140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21140;old_locus_tag=y4141
NC_004088.1	Protein Homology	CDS	4595826	4596650	.	-	0	ID=cds4109;Parent=gene4214;Dbxref=Genbank:WP_002228150.1;Name=WP_002228150.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0;gbkey=CDS;product=ATP synthase subunit a;protein_id=WP_002228150.1;transl_table=11
NC_004088.1	RefSeq	gene	4596690	4597073	.	-	.	ID=gene4215;Name=Y_RS21145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21145;old_locus_tag=y4142
NC_004088.1	Protein Homology	CDS	4596690	4597073	.	-	0	ID=cds4110;Parent=gene4215;Dbxref=Genbank:WP_002223773.1;Name=WP_002223773.1;gbkey=CDS;product=F0F1 ATP synthase subunit I;protein_id=WP_002223773.1;transl_table=11
NC_004088.1	RefSeq	gene	4597740	4598360	.	-	.	ID=gene4216;Name=gidB;gbkey=Gene;gene=gidB;gene_biotype=protein_coding;locus_tag=Y_RS21150;old_locus_tag=y4143
NC_004088.1	Protein Homology	CDS	4597740	4598360	.	-	0	ID=cds4111;Parent=gene4216;Dbxref=Genbank:WP_002212261.1;Name=WP_002212261.1;Note=glucose-inhibited division protein B%3B SAM-dependent methyltransferase%3B methylates the N7 position of guanosine in position 527 of 16S rRNA;gbkey=CDS;gene=gidB;product=ribosomal RNA small subunit methyltransferase G;protein_id=WP_002212261.1;transl_table=11
NC_004088.1	RefSeq	gene	4598506	4600395	.	-	.	ID=gene4217;Name=Y_RS21155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21155;old_locus_tag=y4144
NC_004088.1	Protein Homology	CDS	4598506	4600395	.	-	0	ID=cds4112;Parent=gene4217;Dbxref=Genbank:WP_002212259.1;Name=WP_002212259.1;gbkey=CDS;product=tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG;protein_id=WP_002212259.1;transl_table=11
##sequence-region NC_004838.1 1 100990
##species http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=187410
NC_004838.1	RefSeq	region	1	100990	.	+	.	ID=id507;Dbxref=taxon:187410;Is_circular=true;Name=pMT-1;gbkey=Src;genome=plasmid;mol_type=genomic DNA;plasmid-name=pMT-1;strain=KIM10+
NC_004838.1	RefSeq	gene	100925	101137	.	+	.	ID=gene4218;Name=Y_RS21180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21180;old_locus_tag=Y1119
NC_004838.1	Protein Homology	CDS	100925	101137	.	+	0	ID=cds4113;Parent=gene4218;Dbxref=Genbank:WP_002222711.1;Name=WP_002222711.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002222711.1;transl_table=11
NC_004838.1	RefSeq	region	151	2061	.	-	.	ID=id508;gbkey=rep_origin
NC_004838.1	RefSeq	repeat_region	155	173	.	+	.	ID=id509;Note=iteron 24;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	202	220	.	+	.	ID=id510;Note=iteron 23;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	242	260	.	+	.	ID=id511;Note=iteron 22;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	282	300	.	+	.	ID=id512;Note=iteron 21;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	323	341	.	+	.	ID=id513;Note=iteron 20;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	341	363	.	-	.	ID=id514;Note=iteron 19;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	410	428	.	+	.	ID=id515;Note=iteron 18;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	449	467	.	+	.	ID=id516;Note=iteron 17;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	487	505	.	+	.	ID=id517;Note=iteron 16;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	593	611	.	-	.	ID=id518;Note=iteron 15;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	617	635	.	-	.	ID=id519;Note=iteron 14;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	665	683	.	-	.	ID=id520;Note=iteron 13;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	695	713	.	-	.	ID=id521;Note=iteron 12;gbkey=repeat_region
NC_004838.1	RefSeq	gene	717	1781	.	-	.	ID=gene4219;Name=Y_RS21185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21185;old_locus_tag=Y1119.1n
NC_004838.1	Protein Homology	CDS	717	1781	.	-	0	ID=cds4114;Parent=gene4219;Dbxref=Genbank:WP_002214164.1;Name=WP_002214164.1;gbkey=CDS;product=replication protein RepA;protein_id=WP_002214164.1;transl_table=11
NC_004838.1	RefSeq	repeat_region	1819	1837	.	-	.	ID=id522;Note=iteron 11;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	1841	1859	.	-	.	ID=id523;Note=iteron 10;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	1862	1880	.	-	.	ID=id524;Note=iteron 9;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	1883	1901	.	-	.	ID=id525;Note=iteron 8;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	1904	1922	.	-	.	ID=id526;Note=iteron 7;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	1925	1945	.	-	.	ID=id527;Note=iteron 6;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	2222	2240	.	-	.	ID=id528;Note=iteron 5;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	2245	2263	.	-	.	ID=id529;Note=iteron 4;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	2265	2283	.	-	.	ID=id530;Note=iteron 3;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	2287	2305	.	-	.	ID=id531;Note=iteron 2;gbkey=repeat_region
NC_004838.1	RefSeq	repeat_region	2307	2325	.	-	.	ID=id532;Note=iteron 1;gbkey=repeat_region
NC_004838.1	RefSeq	gene	2526	3170	.	+	.	ID=gene4220;Name=Y_RS21190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21190;old_locus_tag=Y1002
NC_004838.1	Protein Homology	CDS	2526	3170	.	+	0	ID=cds4115;Parent=gene4220;Dbxref=Genbank:WP_002214160.1;Name=WP_002214160.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214160.1;transl_table=11
NC_004838.1	RefSeq	gene	3246	3392	.	+	.	ID=gene4221;Name=Y_RS21195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21195;old_locus_tag=Y1002.1N
NC_004838.1	Protein Homology	CDS	3246	3392	.	+	0	ID=cds4116;Parent=gene4221;Dbxref=Genbank:WP_002214158.1;Name=WP_002214158.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214158.1;transl_table=11
NC_004838.1	RefSeq	gene	3530	4552	.	-	.	ID=gene4222;Name=Y_RS21200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21200;old_locus_tag=Y1004
NC_004838.1	Protein Homology	CDS	3530	4552	.	-	0	ID=cds4117;Parent=gene4222;Dbxref=Genbank:WP_002213298.1;Name=WP_002213298.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213298.1;transl_table=11
NC_004838.1	RefSeq	gene	4631	4819	.	-	.	ID=gene4223;Name=Y_RS21205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21205
NC_004838.1	Protein Homology	CDS	4631	4819	.	-	0	ID=cds4118;Parent=gene4223;Dbxref=Genbank:WP_002214154.1;Name=WP_002214154.1;gbkey=CDS;product=membrane protein;protein_id=WP_002214154.1;transl_table=11
NC_004838.1	RefSeq	gene	4968	6053	.	+	.	ID=gene4224;Name=Y_RS21210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21210;old_locus_tag=Y1006
NC_004838.1	Protein Homology	CDS	4968	6053	.	+	0	ID=cds4119;Parent=gene4224;Dbxref=Genbank:WP_002213300.1;Name=WP_002213300.1;gbkey=CDS;product=exonuclease;protein_id=WP_002213300.1;transl_table=11
NC_004838.1	RefSeq	gene	6050	6274	.	+	.	ID=gene4225;Name=Y_RS21215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21215;old_locus_tag=Y1007
NC_004838.1	Protein Homology	CDS	6050	6274	.	+	0	ID=cds4120;Parent=gene4225;Dbxref=Genbank:WP_002228794.1;Name=WP_002228794.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228794.1;transl_table=11
NC_004838.1	RefSeq	gene	6283	8199	.	+	.	ID=gene4226;Name=Y_RS21220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21220;old_locus_tag=Y1008
NC_004838.1	Protein Homology	CDS	6283	8199	.	+	0	ID=cds4121;Parent=gene4226;Dbxref=Genbank:WP_002214148.1;Name=WP_002214148.1;gbkey=CDS;product=exonuclease;protein_id=WP_002214148.1;transl_table=11
NC_004838.1	RefSeq	gene	8189	8935	.	+	.	ID=gene4227;Name=Y_RS21225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21225;old_locus_tag=Y1009
NC_004838.1	Protein Homology	CDS	8189	8935	.	+	0	ID=cds4122;Parent=gene4227;Dbxref=Genbank:WP_011114035.1;Name=WP_011114035.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011114035.1;transl_table=11
NC_004838.1	RefSeq	gene	8948	9517	.	+	.	ID=gene4228;Name=Y_RS21230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21230;old_locus_tag=Y1010
NC_004838.1	Protein Homology	CDS	8948	9517	.	+	0	ID=cds4123;Parent=gene4228;Dbxref=Genbank:WP_002214145.1;Name=WP_002214145.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214145.1;transl_table=11
NC_004838.1	RefSeq	region	9576	10292	.	+	.	ID=id533;gbkey=mobile_element
NC_004838.1	RefSeq	gene	9593	9716	.	+	.	ID=gene4229;Name=Y_RS21805;gbkey=Gene;gene_biotype=ncRNA;locus_tag=Y_RS21805
NC_004838.1	cmsearch	ncRNA	9593	9716	.	+	.	ID=rna97;Parent=gene4229;gbkey=ncRNA;ncrna_class=other;product=Hfq binding sRNA
NC_004838.1	cmsearch	exon	9593	9716	.	+	.	ID=id534;Parent=rna97;gbkey=ncRNA;ncrna_class=other;product=Hfq binding sRNA
NC_004838.1	RefSeq	gene	9726	10184	.	+	.	ID=gene4230;Name=Y_RS21235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21235;old_locus_tag=Y1011
NC_004838.1	Protein Homology	CDS	9726	10184	.	+	0	ID=cds4124;Parent=gene4230;Dbxref=Genbank:WP_002213759.1;Name=WP_002213759.1;gbkey=CDS;product=transposase;protein_id=WP_002213759.1;transl_table=11
NC_004838.1	RefSeq	gene	10384	10665	.	+	.	ID=gene4231;Name=Y_RS21240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21240;old_locus_tag=Y1012.S
NC_004838.1	Protein Homology	CDS	10384	10665	.	+	0	ID=cds4125;Parent=gene4231;Dbxref=Genbank:WP_002211802.1;Name=WP_002211802.1;gbkey=CDS;product=ABC transporter;protein_id=WP_002211802.1;transl_table=11
NC_004838.1	RefSeq	gene	10682	10858	.	+	.	ID=gene4232;Name=Y_RS21245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21245
NC_004838.1	Protein Homology	CDS	10682	10858	.	+	0	ID=cds4126;Parent=gene4232;Dbxref=Genbank:WP_002233073.1;Name=WP_002233073.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002233073.1;transl_table=11
NC_004838.1	RefSeq	gene	10871	11353	.	+	.	ID=gene4233;Name=Y_RS21250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21250;old_locus_tag=Y1015
NC_004838.1	Protein Homology	CDS	10871	11353	.	+	0	ID=cds4127;Parent=gene4233;Dbxref=Genbank:WP_002211801.1;Name=WP_002211801.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211801.1;transl_table=11
NC_004838.1	RefSeq	gene	11332	11691	.	-	.	ID=gene4234;Name=Y_RS21255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21255;old_locus_tag=Y1016
NC_004838.1	Protein Homology	CDS	11332	11691	.	-	0	ID=cds4128;Parent=gene4234;Dbxref=Genbank:WP_002214139.1;Name=WP_002214139.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214139.1;transl_table=11
NC_004838.1	RefSeq	gene	11992	12219	.	-	.	ID=gene4235;Name=Y_RS21260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21260;old_locus_tag=Y1017
NC_004838.1	Protein Homology	CDS	11992	12219	.	-	0	ID=cds4129;Parent=gene4235;Dbxref=Genbank:WP_002214137.1;Name=WP_002214137.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214137.1;transl_table=11
NC_004838.1	RefSeq	gene	12304	12954	.	-	.	ID=gene4236;Name=Y_RS21265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21265;old_locus_tag=Y1018
NC_004838.1	Protein Homology	CDS	12304	12954	.	-	0	ID=cds4130;Parent=gene4236;Dbxref=Genbank:WP_002211799.1;Name=WP_002211799.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211799.1;transl_table=11
NC_004838.1	RefSeq	gene	13278	13805	.	-	.	ID=gene4237;Name=Y_RS21270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21270;old_locus_tag=Y1019.S
NC_004838.1	Protein Homology	CDS	13278	13805	.	-	0	ID=cds4131;Parent=gene4237;Dbxref=Genbank:WP_002214134.1;Name=WP_002214134.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_002214134.1;transl_table=11
NC_004838.1	RefSeq	gene	13810	14232	.	-	.	ID=gene4238;Name=Y_RS21275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21275;old_locus_tag=Y1020
NC_004838.1	Protein Homology	CDS	13810	14232	.	-	0	ID=cds4132;Parent=gene4238;Dbxref=Genbank:WP_002211796.1;Name=WP_002211796.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211796.1;transl_table=11
NC_004838.1	RefSeq	gene	14292	14570	.	-	.	ID=gene4239;Name=Y_RS21280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21280;old_locus_tag=Y1021
NC_004838.1	Protein Homology	CDS	14292	14570	.	-	0	ID=cds4133;Parent=gene4239;Dbxref=Genbank:WP_002214131.1;Name=WP_002214131.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214131.1;transl_table=11
NC_004838.1	RefSeq	gene	14573	16132	.	-	.	ID=gene4240;Name=Y_RS21285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21285;old_locus_tag=Y1022
NC_004838.1	Protein Homology	CDS	14573	16132	.	-	0	ID=cds4134;Parent=gene4240;Dbxref=Genbank:WP_002211794.1;Name=WP_002211794.1;gbkey=CDS;product=helicase;protein_id=WP_002211794.1;transl_table=11
NC_004838.1	RefSeq	gene	16197	16895	.	+	.	ID=gene4241;Name=Y_RS21290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21290;old_locus_tag=Y1023
NC_004838.1	Protein Homology	CDS	16197	16895	.	+	0	ID=cds4135;Parent=gene4241;Dbxref=Genbank:WP_002228791.1;Name=WP_002228791.1;gbkey=CDS;product=chromosome partitioning protein ParB;protein_id=WP_002228791.1;transl_table=11
NC_004838.1	RefSeq	gene	16895	17563	.	+	.	ID=gene4242;Name=Y_RS21295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21295;old_locus_tag=Y1024.S
NC_004838.1	Protein Homology	CDS	16895	17563	.	+	0	ID=cds4136;Parent=gene4242;Dbxref=Genbank:WP_002211792.1;Name=WP_002211792.1;gbkey=CDS;product=chromosome partitioning protein ParB;protein_id=WP_002211792.1;transl_table=11
NC_004838.1	RefSeq	gene	17560	18198	.	+	.	ID=gene4243;Name=Y_RS21300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21300;old_locus_tag=Y1025.S
NC_004838.1	Protein Homology	CDS	17560	18198	.	+	0	ID=cds4137;Parent=gene4243;Dbxref=Genbank:WP_002211791.1;Name=WP_002211791.1;gbkey=CDS;product=ABC transporter;protein_id=WP_002211791.1;transl_table=11
NC_004838.1	RefSeq	gene	18191	18445	.	+	.	ID=gene4244;Name=Y_RS21305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21305;old_locus_tag=Y1026
NC_004838.1	Protein Homology	CDS	18191	18445	.	+	0	ID=cds4138;Parent=gene4244;Dbxref=Genbank:WP_002211790.1;Name=WP_002211790.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211790.1;transl_table=11
NC_004838.1	RefSeq	gene	18451	19341	.	+	.	ID=gene4245;Name=Y_RS21310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21310;old_locus_tag=Y1027
NC_004838.1	Protein Homology	CDS	18451	19341	.	+	0	ID=cds4139;Parent=gene4245;Dbxref=Genbank:WP_002211789.1;Name=WP_002211789.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211789.1;transl_table=11
NC_004838.1	RefSeq	gene	19351	19617	.	+	.	ID=gene4246;Name=Y_RS21315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21315;old_locus_tag=Y1028
NC_004838.1	Protein Homology	CDS	19351	19617	.	+	0	ID=cds4140;Parent=gene4246;Dbxref=Genbank:WP_000176291.1;Name=WP_000176291.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000176291.1;transl_table=11
NC_004838.1	RefSeq	gene	19813	20454	.	+	.	ID=gene4247;Name=Y_RS21320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21320;old_locus_tag=Y1029
NC_004838.1	Protein Homology	CDS	19813	20454	.	+	0	ID=cds4141;Parent=gene4247;Dbxref=Genbank:WP_002211788.1;Name=WP_002211788.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002211788.1;transl_table=11
NC_004838.1	RefSeq	gene	20457	21713	.	+	.	ID=gene4248;Name=Y_RS21325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21325;old_locus_tag=Y1030
NC_004838.1	Protein Homology	CDS	20457	21713	.	+	0	ID=cds4142;Parent=gene4248;Dbxref=Genbank:WP_002211787.1;Name=WP_002211787.1;gbkey=CDS;product=terminase;protein_id=WP_002211787.1;transl_table=11
NC_004838.1	RefSeq	gene	21747	23321	.	+	.	ID=gene4249;Name=Y_RS21330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21330;old_locus_tag=Y1031
NC_004838.1	Protein Homology	CDS	21747	23321	.	+	0	ID=cds4143;Parent=gene4249;Dbxref=Genbank:WP_002211786.1;Name=WP_002211786.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211786.1;transl_table=11
NC_004838.1	RefSeq	gene	23344	24244	.	+	.	ID=gene4250;Name=Y_RS21335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Y_RS21335;pseudo=true
NC_004838.1	Protein Homology	CDS	23344	24244	.	+	0	ID=cds4144;Parent=gene4250;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_004838.1	RefSeq	gene	24271	25146	.	+	.	ID=gene4251;Name=Y_RS21340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21340;old_locus_tag=Y1034
NC_004838.1	Protein Homology	CDS	24271	25146	.	+	0	ID=cds4145;Parent=gene4251;Dbxref=Genbank:WP_002211784.1;Name=WP_002211784.1;gbkey=CDS;product=phage capsid protein;protein_id=WP_002211784.1;transl_table=11
NC_004838.1	RefSeq	gene	25221	25883	.	+	.	ID=gene4252;Name=Y_RS21345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21345;old_locus_tag=Y1035
NC_004838.1	Protein Homology	CDS	25221	25883	.	+	0	ID=cds4146;Parent=gene4252;Dbxref=Genbank:WP_002211783.1;Name=WP_002211783.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211783.1;transl_table=11
NC_004838.1	RefSeq	gene	25927	26361	.	+	.	ID=gene4253;Name=Y_RS21350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21350;old_locus_tag=Y1036
NC_004838.1	Protein Homology	CDS	25927	26361	.	+	0	ID=cds4147;Parent=gene4253;Dbxref=Genbank:WP_002211782.1;Name=WP_002211782.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211782.1;transl_table=11
NC_004838.1	RefSeq	gene	26361	27194	.	+	.	ID=gene4254;Name=Y_RS21355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21355;old_locus_tag=Y1037
NC_004838.1	Protein Homology	CDS	26361	27194	.	+	0	ID=cds4148;Parent=gene4254;Dbxref=Genbank:WP_002211781.1;Name=WP_002211781.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211781.1;transl_table=11
NC_004838.1	RefSeq	gene	27292	27636	.	+	.	ID=gene4255;Name=Y_RS21360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21360
NC_004838.1	Protein Homology	CDS	27292	27636	.	+	0	ID=cds4149;Parent=gene4255;Dbxref=Genbank:WP_001027662.1;Name=WP_001027662.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001027662.1;transl_table=11
NC_004838.1	RefSeq	gene	27627	28100	.	+	.	ID=gene4256;Name=Y_RS21365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21365;old_locus_tag=Y1039
NC_004838.1	Protein Homology	CDS	27627	28100	.	+	0	ID=cds4150;Parent=gene4256;Dbxref=Genbank:WP_002211780.1;Name=WP_002211780.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211780.1;transl_table=11
NC_004838.1	RefSeq	gene	28102	28485	.	+	.	ID=gene4257;Name=Y_RS21370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21370;old_locus_tag=Y1040
NC_004838.1	Protein Homology	CDS	28102	28485	.	+	0	ID=cds4151;Parent=gene4257;Dbxref=Genbank:WP_002211779.1;Name=WP_002211779.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211779.1;transl_table=11
NC_004838.1	RefSeq	gene	28560	29306	.	+	.	ID=gene4258;Name=Y_RS21375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21375;old_locus_tag=Y1041
NC_004838.1	Protein Homology	CDS	28560	29306	.	+	0	ID=cds4152;Parent=gene4258;Dbxref=Genbank:WP_002211778.1;Name=WP_002211778.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211778.1;transl_table=11
NC_004838.1	RefSeq	gene	29366	29683	.	+	.	ID=gene4259;Name=Y_RS21380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21380;old_locus_tag=Y1042
NC_004838.1	Protein Homology	CDS	29366	29683	.	+	0	ID=cds4153;Parent=gene4259;Dbxref=Genbank:WP_000163862.1;Name=WP_000163862.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000163862.1;transl_table=11
NC_004838.1	RefSeq	gene	29800	30033	.	+	.	ID=gene4260;Name=Y_RS21390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21390;old_locus_tag=Y1043
NC_004838.1	Protein Homology	CDS	29800	30033	.	+	0	ID=cds4154;Parent=gene4260;Dbxref=Genbank:WP_002211777.1;Name=WP_002211777.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211777.1;transl_table=11
NC_004838.1	RefSeq	gene	30041	34618	.	+	.	ID=gene4261;Name=Y_RS21395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21395;old_locus_tag=Y1044
NC_004838.1	Protein Homology	CDS	30041	34618	.	+	0	ID=cds4155;Parent=gene4261;Dbxref=Genbank:WP_002211776.1;Name=WP_002211776.1;gbkey=CDS;product=phage tail tape measure protein;protein_id=WP_002211776.1;transl_table=11
NC_004838.1	RefSeq	gene	34660	34995	.	+	.	ID=gene4262;Name=Y_RS21400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21400;old_locus_tag=Y1045
NC_004838.1	Protein Homology	CDS	34660	34995	.	+	0	ID=cds4156;Parent=gene4262;Dbxref=Genbank:WP_000440566.1;Name=WP_000440566.1;gbkey=CDS;product=tail protein;protein_id=WP_000440566.1;transl_table=11
NC_004838.1	RefSeq	gene	35085	35783	.	+	.	ID=gene4263;Name=Y_RS21405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21405;old_locus_tag=Y1046
NC_004838.1	Protein Homology	CDS	35085	35783	.	+	0	ID=cds4157;Parent=gene4263;Dbxref=Genbank:WP_002211775.1;Name=WP_002211775.1;gbkey=CDS;product=tail protein;protein_id=WP_002211775.1;transl_table=11
NC_004838.1	RefSeq	gene	35776	36573	.	+	.	ID=gene4264;Name=Y_RS21410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21410;old_locus_tag=Y1047.S
NC_004838.1	Protein Homology	CDS	35776	36573	.	+	0	ID=cds4158;Parent=gene4264;Dbxref=Genbank:WP_002211774.1;Name=WP_002211774.1;gbkey=CDS;product=tail protein;protein_id=WP_002211774.1;transl_table=11
NC_004838.1	RefSeq	gene	36561	37148	.	+	.	ID=gene4265;Name=Y_RS21415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21415;old_locus_tag=Y1048
NC_004838.1	Protein Homology	CDS	36561	37148	.	+	0	ID=cds4159;Parent=gene4265;Dbxref=Genbank:WP_002211773.1;Name=WP_002211773.1;gbkey=CDS;product=phage tail protein;protein_id=WP_002211773.1;transl_table=11
NC_004838.1	RefSeq	gene	37170	41801	.	+	.	ID=gene4266;Name=Y_RS21420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21420;old_locus_tag=Y1049
NC_004838.1	Protein Homology	CDS	37170	41801	.	+	0	ID=cds4160;Parent=gene4266;Dbxref=Genbank:WP_002214118.1;Name=WP_002214118.1;gbkey=CDS;product=host specificity protein J;protein_id=WP_002214118.1;transl_table=11
NC_004838.1	RefSeq	gene	41804	42436	.	+	.	ID=gene4267;Name=Y_RS21425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21425;old_locus_tag=Y1050
NC_004838.1	Protein Homology	CDS	41804	42436	.	+	0	ID=cds4161;Parent=gene4267;Dbxref=Genbank:WP_002214116.1;Name=WP_002214116.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002214116.1;transl_table=11
NC_004838.1	RefSeq	gene	42517	45405	.	+	.	ID=gene4268;Name=Y_RS21430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21430;old_locus_tag=Y1051
NC_004838.1	Protein Homology	CDS	42517	45405	.	+	0	ID=cds4162;Parent=gene4268;Dbxref=Genbank:WP_002211770.1;Name=WP_002211770.1;gbkey=CDS;product=phage tail protein;protein_id=WP_002211770.1;transl_table=11
NC_004838.1	RefSeq	gene	45402	45614	.	+	.	ID=gene4269;Name=Y_RS21435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21435;old_locus_tag=Y1052
NC_004838.1	Protein Homology	CDS	45402	45614	.	+	0	ID=cds4163;Parent=gene4269;Dbxref=Genbank:WP_002217458.1;Name=WP_002217458.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002217458.1;transl_table=11
NC_004838.1	RefSeq	gene	45707	46315	.	+	.	ID=gene4270;Name=Y_RS21440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21440;old_locus_tag=Y1053
NC_004838.1	Protein Homology	CDS	45707	46315	.	+	0	ID=cds4164;Parent=gene4270;Dbxref=Genbank:WP_002211769.1;Name=WP_002211769.1;gbkey=CDS;product=tail assembly protein;protein_id=WP_002211769.1;transl_table=11
NC_004838.1	RefSeq	repeat_region	46383	48336	.	+	.	ID=id535;gbkey=repeat_region
NC_004838.1	RefSeq	region	46383	48336	.	+	.	ID=id536;gbkey=mobile_element
NC_004838.1	RefSeq	gene	46449	47228	.	-	.	ID=gene4271;Name=Y_RS21445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21445;old_locus_tag=Y1054
NC_004838.1	Protein Homology	CDS	46449	47228	.	-	0	ID=cds4165;Parent=gene4271;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004838.1	RefSeq	gene	47228	48250	.	-	.	ID=gene4272;Name=Y_RS21450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21450;old_locus_tag=Y1055
NC_004838.1	Protein Homology	CDS	47228	48250	.	-	0	ID=cds4166;Parent=gene4272;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004838.1	RefSeq	gene	48264	48617	.	-	.	ID=gene4273;Name=Y_RS21455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21455;old_locus_tag=Y1056
NC_004838.1	Protein Homology	CDS	48264	48617	.	-	0	ID=cds4167;Parent=gene4273;Dbxref=Genbank:WP_002224269.1;Name=WP_002224269.1;gbkey=CDS;product=DNA ligase;protein_id=WP_002224269.1;transl_table=11
NC_004838.1	RefSeq	gene	48652	48909	.	-	.	ID=gene4274;Name=Y_RS21460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21460
NC_004838.1	Protein Homology	CDS	48652	48909	.	-	0	ID=cds4168;Parent=gene4274;Dbxref=Genbank:WP_002224267.1;Name=WP_002224267.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224267.1;transl_table=11
NC_004838.1	RefSeq	gene	49210	50004	.	-	.	ID=gene4275;Name=Y_RS21465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21465;old_locus_tag=Y1060
NC_004838.1	Protein Homology	CDS	49210	50004	.	-	0	ID=cds4169;Parent=gene4275;Dbxref=Genbank:WP_002224265.1;Name=WP_002224265.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224265.1;transl_table=11
NC_004838.1	RefSeq	gene	50257	50979	.	+	.	ID=gene4276;Name=Y_RS21470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21470;old_locus_tag=Y1061
NC_004838.1	Protein Homology	CDS	50257	50979	.	+	0	ID=cds4170;Parent=gene4276;Dbxref=Genbank:WP_002224263.1;Name=WP_002224263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224263.1;transl_table=11
NC_004838.1	RefSeq	region	50872	52256	.	+	.	ID=id537;gbkey=mobile_element
NC_004838.1	RefSeq	gene	51013	52221	.	+	.	ID=gene4277;Name=Y_RS21475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21475;old_locus_tag=Y1062
NC_004838.1	Protein Homology	CDS	51013	52221	.	+	0	ID=cds4171;Parent=gene4277;Dbxref=Genbank:WP_002209743.1;Name=WP_002209743.1;gbkey=CDS;product=transposase;protein_id=WP_002209743.1;transl_table=11
NC_004838.1	RefSeq	gene	52351	52530	.	+	.	ID=gene4278;Name=Y_RS21480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21480
NC_004838.1	Protein Homology	CDS	52351	52530	.	+	0	ID=cds4172;Parent=gene4278;Dbxref=Genbank:WP_002216419.1;Name=WP_002216419.1;gbkey=CDS;product=DNA helicase;protein_id=WP_002216419.1;transl_table=11
NC_004838.1	RefSeq	gene	52690	53712	.	+	.	ID=gene4279;Name=Y_RS21485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21485;old_locus_tag=Y1063.S
NC_004838.1	Protein Homology	CDS	52690	53712	.	+	0	ID=cds4173;Parent=gene4279;Dbxref=Genbank:WP_002211760.1;Name=WP_002211760.1;gbkey=CDS;product=transposase;protein_id=WP_002211760.1;transl_table=11
NC_004838.1	RefSeq	gene	53911	54228	.	-	.	ID=gene4280;Name=Y_RS21490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21490;old_locus_tag=Y1064
NC_004838.1	Protein Homology	CDS	53911	54228	.	-	0	ID=cds4174;Parent=gene4280;Dbxref=Genbank:WP_002216421.1;Name=WP_002216421.1;gbkey=CDS;product=transposase;protein_id=WP_002216421.1;transl_table=11
NC_004838.1	RefSeq	gene	54408	54779	.	-	.	ID=gene4281;Name=Y_RS21495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21495;old_locus_tag=Y1066
NC_004838.1	Protein Homology	CDS	54408	54779	.	-	0	ID=cds4175;Parent=gene4281;Dbxref=Genbank:WP_002228772.1;Name=WP_002228772.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228772.1;transl_table=11
NC_004838.1	RefSeq	gene	54694	55002	.	-	.	ID=gene4282;Name=Y_RS21500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21500;old_locus_tag=Y1067
NC_004838.1	Protein Homology	CDS	54694	55002	.	-	0	ID=cds4176;Parent=gene4282;Dbxref=Genbank:WP_002228773.1;Name=WP_002228773.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228773.1;transl_table=11
NC_004838.1	RefSeq	gene	55088	55543	.	+	.	ID=gene4283;Name=Y_RS21505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21505;old_locus_tag=Y1068.S
NC_004838.1	Protein Homology	CDS	55088	55543	.	+	0	ID=cds4177;Parent=gene4283;Dbxref=Genbank:WP_002353217.1;Name=WP_002353217.1;gbkey=CDS;product=reverse transcriptase;protein_id=WP_002353217.1;transl_table=11
NC_004838.1	RefSeq	gene	55788	57551	.	-	.	ID=gene4284;Name=Y_RS21510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21510;old_locus_tag=Y1069
NC_004838.1	Protein Homology	CDS	55788	57551	.	-	0	ID=cds4178;Parent=gene4284;Dbxref=Genbank:WP_002211758.1;Name=WP_002211758.1;gbkey=CDS;product=phospholipase D;protein_id=WP_002211758.1;transl_table=11
NC_004838.1	RefSeq	gene	57629	58117	.	-	.	ID=gene4285;Name=Y_RS21515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21515;old_locus_tag=Y1070
NC_004838.1	Protein Homology	CDS	57629	58117	.	-	0	ID=cds4179;Parent=gene4285;Dbxref=Genbank:WP_002211757.1;Name=WP_002211757.1;gbkey=CDS;product=phospholipase D;protein_id=WP_002211757.1;transl_table=11
NC_004838.1	RefSeq	gene	58856	59131	.	+	.	ID=gene4286;Name=Y_RS21520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21520;old_locus_tag=Y1071.S
NC_004838.1	Protein Homology	CDS	58856	59131	.	+	0	ID=cds4180;Parent=gene4286;Dbxref=Genbank:WP_002211756.1;Name=WP_002211756.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211756.1;transl_table=11
NC_004838.1	RefSeq	gene	59154	60095	.	-	.	ID=gene4287;Name=Y_RS21525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21525;old_locus_tag=Y1072
NC_004838.1	Protein Homology	CDS	59154	60095	.	-	0	ID=cds4181;Parent=gene4287;Dbxref=Genbank:WP_002215065.1;Name=WP_002215065.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215065.1;transl_table=11
NC_004838.1	RefSeq	gene	60161	60781	.	-	.	ID=gene4288;Name=Y_RS21530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21530;old_locus_tag=Y1073
NC_004838.1	Protein Homology	CDS	60161	60781	.	-	0	ID=cds4182;Parent=gene4288;Dbxref=Genbank:WP_002211754.1;Name=WP_002211754.1;gbkey=CDS;product=serine recombinase;protein_id=WP_002211754.1;transl_table=11
NC_004838.1	RefSeq	gene	60981	61307	.	-	.	ID=gene4289;Name=Y_RS21535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21535;old_locus_tag=Y1074
NC_004838.1	Protein Homology	CDS	60981	61307	.	-	0	ID=cds4183;Parent=gene4289;Dbxref=Genbank:WP_002215068.1;Name=WP_002215068.1;gbkey=CDS;product=plasmid stabilization protein;protein_id=WP_002215068.1;transl_table=11
NC_004838.1	RefSeq	gene	61307	61534	.	-	.	ID=gene4290;Name=Y_RS21540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21540;old_locus_tag=Y1075
NC_004838.1	Protein Homology	CDS	61307	61534	.	-	0	ID=cds4184;Parent=gene4290;Dbxref=Genbank:WP_002211753.1;Name=WP_002211753.1;gbkey=CDS;product=prevent-host-death protein;protein_id=WP_002211753.1;transl_table=11
NC_004838.1	RefSeq	region	61661	61934	.	+	.	ID=id538;Note=similar to Escherichia coli F plasmid RepF1b region found in GenBank Accession Number M26308;gbkey=rep_origin
NC_004838.1	RefSeq	gene	61836	63041	.	+	.	ID=gene4291;Name=Y_RS21545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21545;old_locus_tag=Y1076.S
NC_004838.1	Protein Homology	CDS	61836	63041	.	+	0	ID=cds4185;Parent=gene4291;Dbxref=Genbank:WP_002211752.1;Name=WP_002211752.1;gbkey=CDS;product=chromosome partitioning protein ParA;protein_id=WP_002211752.1;transl_table=11
NC_004838.1	RefSeq	gene	63038	64009	.	+	.	ID=gene4292;Name=Y_RS21550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21550;old_locus_tag=Y1077
NC_004838.1	Protein Homology	CDS	63038	64009	.	+	0	ID=cds4186;Parent=gene4292;Dbxref=Genbank:WP_002215070.1;Name=WP_002215070.1;gbkey=CDS;product=chromosome partitioning protein ParB;protein_id=WP_002215070.1;transl_table=11
NC_004838.1	RefSeq	gene	64388	65785	.	+	.	ID=gene4293;Name=Y_RS21555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21555;old_locus_tag=Y1080
NC_004838.1	Protein Homology	CDS	64388	65785	.	+	0	ID=cds4187;Parent=gene4293;Dbxref=Genbank:WP_002228775.1;Name=WP_002228775.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002228775.1;transl_table=11
NC_004838.1	RefSeq	gene	65947	66147	.	-	.	ID=gene4294;Name=Y_RS21560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21560
NC_004838.1	Protein Homology	CDS	65947	66147	.	-	0	ID=cds4188;Parent=gene4294;Dbxref=Genbank:WP_002211750.1;Name=WP_002211750.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211750.1;transl_table=11
NC_004838.1	RefSeq	gene	66648	67325	.	+	.	ID=gene4295;Name=Y_RS21565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21565;old_locus_tag=Y1085
NC_004838.1	Protein Homology	CDS	66648	67325	.	+	0	ID=cds4189;Parent=gene4295;Dbxref=Genbank:WP_002211749.1;Name=WP_002211749.1;gbkey=CDS;product=methylase;protein_id=WP_002211749.1;transl_table=11
NC_004838.1	RefSeq	gene	67325	67546	.	+	.	ID=gene4296;Name=Y_RS21570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21570;old_locus_tag=Y1086
NC_004838.1	Protein Homology	CDS	67325	67546	.	+	0	ID=cds4190;Parent=gene4296;Dbxref=Genbank:WP_002211748.1;Name=WP_002211748.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211748.1;transl_table=11
NC_004838.1	RefSeq	gene	67557	67976	.	+	.	ID=gene4297;Name=Y_RS21575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21575;old_locus_tag=Y1087.S
NC_004838.1	Protein Homology	CDS	67557	67976	.	+	0	ID=cds4191;Parent=gene4297;Dbxref=Genbank:WP_002215082.1;Name=WP_002215082.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215082.1;transl_table=11
NC_004838.1	RefSeq	gene	68030	68809	.	+	.	ID=gene4298;Name=Y_RS21580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21580;old_locus_tag=Y1088
NC_004838.1	Protein Homology	CDS	68030	68809	.	+	0	ID=cds4192;Parent=gene4298;Dbxref=Genbank:WP_002211747.1;Name=WP_002211747.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211747.1;transl_table=11
NC_004838.1	RefSeq	gene	69208	69714	.	+	.	ID=gene4299;Name=Y_RS21585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21585;old_locus_tag=Y1090
NC_004838.1	Protein Homology	CDS	69208	69714	.	+	0	ID=cds4193;Parent=gene4299;Dbxref=Genbank:WP_002211746.1;Name=WP_002211746.1;gbkey=CDS;product=antirestriction protein;protein_id=WP_002211746.1;transl_table=11
NC_004838.1	RefSeq	gene	70427	70657	.	+	.	ID=gene4300;Name=Y_RS21590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21590;old_locus_tag=Y1091
NC_004838.1	Protein Homology	CDS	70427	70657	.	+	0	ID=cds4194;Parent=gene4300;Dbxref=Genbank:WP_002211745.1;Name=WP_002211745.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211745.1;transl_table=11
NC_004838.1	RefSeq	gene	70730	72739	.	+	.	ID=gene4301;Name=Y_RS21595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21595;old_locus_tag=Y1092
NC_004838.1	Protein Homology	CDS	70730	72739	.	+	0	ID=cds4195;Parent=gene4301;Dbxref=Genbank:WP_002211744.1;Name=WP_002211744.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002211744.1;transl_table=11
NC_004838.1	RefSeq	repeat_region	72777	74730	.	+	.	ID=id539;gbkey=repeat_region
NC_004838.1	RefSeq	region	72777	74730	.	+	.	ID=id540;gbkey=mobile_element
NC_004838.1	RefSeq	gene	72863	73885	.	+	.	ID=gene4302;Name=Y_RS21600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21600;old_locus_tag=Y1093
NC_004838.1	Protein Homology	CDS	72863	73885	.	+	0	ID=cds4196;Parent=gene4302;Dbxref=Genbank:WP_000255944.1;Name=WP_000255944.1;gbkey=CDS;product=transposase;protein_id=WP_000255944.1;transl_table=11
NC_004838.1	RefSeq	gene	73885	74664	.	+	.	ID=gene4303;Name=Y_RS21605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21605;old_locus_tag=Y1094
NC_004838.1	Protein Homology	CDS	73885	74664	.	+	0	ID=cds4197;Parent=gene4303;Dbxref=Genbank:WP_001297096.1;Name=WP_001297096.1;gbkey=CDS;product=transposase;protein_id=WP_001297096.1;transl_table=11
NC_004838.1	RefSeq	gene	74740	75777	.	+	.	ID=gene4304;Name=Y_RS21610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21610;old_locus_tag=Y1095
NC_004838.1	Protein Homology	CDS	74740	75777	.	+	0	ID=cds4198;Parent=gene4304;Dbxref=Genbank:WP_002233024.1;Name=WP_002233024.1;gbkey=CDS;product=DNA ligase;protein_id=WP_002233024.1;transl_table=11
NC_004838.1	RefSeq	gene	75937	76152	.	+	.	ID=gene4305;Name=Y_RS21615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21615
NC_004838.1	Protein Homology	CDS	75937	76152	.	+	0	ID=cds4199;Parent=gene4305;Dbxref=Genbank:WP_002224361.1;Name=WP_002224361.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224361.1;transl_table=11
NC_004838.1	RefSeq	gene	76298	76603	.	+	.	ID=gene4306;Name=Y_RS21620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21620;old_locus_tag=Y1096
NC_004838.1	Protein Homology	CDS	76298	76603	.	+	0	ID=cds4200;Parent=gene4306;Dbxref=Genbank:WP_002224363.1;Name=WP_002224363.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002224363.1;transl_table=11
NC_004838.1	RefSeq	gene	77118	78023	.	-	.	ID=gene4307;Name=Y_RS21625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21625;old_locus_tag=Y1097
NC_004838.1	Protein Homology	CDS	77118	78023	.	-	0	ID=cds4201;Parent=gene4307;Dbxref=Genbank:WP_002211761.1;Name=WP_002211761.1;gbkey=CDS;product=F1 operon positive regulatory protein;protein_id=WP_002211761.1;transl_table=11
NC_004838.1	RefSeq	gene	78351	79127	.	+	.	ID=gene4308;Name=Y_RS21630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21630;old_locus_tag=Y1098
NC_004838.1	Protein Homology	CDS	78351	79127	.	+	0	ID=cds4202;Parent=gene4308;Dbxref=Genbank:WP_002211762.1;Name=WP_002211762.1;gbkey=CDS;product=chaperone protein caf1M;protein_id=WP_002211762.1;transl_table=11
NC_004838.1	RefSeq	gene	79152	81653	.	+	.	ID=gene4309;Name=Y_RS21635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21635;old_locus_tag=Y1099
NC_004838.1	Protein Homology	CDS	79152	81653	.	+	0	ID=cds4203;Parent=gene4309;Dbxref=Genbank:WP_002211763.1;Name=WP_002211763.1;gbkey=CDS;product=F1 capsule-anchoring protein;protein_id=WP_002211763.1;transl_table=11
NC_004838.1	RefSeq	gene	81734	82246	.	+	.	ID=gene4310;Name=Y_RS21640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21640;old_locus_tag=Y1100
NC_004838.1	Protein Homology	CDS	81734	82246	.	+	0	ID=cds4204;Parent=gene4310;Dbxref=Genbank:WP_002216410.1;Name=WP_002216410.1;gbkey=CDS;product=F1 capsule antigen;protein_id=WP_002216410.1;transl_table=11
NC_004838.1	RefSeq	gene	83006	84109	.	+	.	ID=gene4311;Name=Y_RS21645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21645;old_locus_tag=Y1101
NC_004838.1	Protein Homology	CDS	83006	84109	.	+	0	ID=cds4205;Parent=gene4311;Dbxref=Genbank:WP_002353208.1;Name=WP_002353208.1;gbkey=CDS;product=integrase;protein_id=WP_002353208.1;transl_table=11
NC_004838.1	RefSeq	gene	84104	84490	.	-	.	ID=gene4312;Name=Y_RS21650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21650;old_locus_tag=Y1102
NC_004838.1	Protein Homology	CDS	84104	84490	.	-	0	ID=cds4206;Parent=gene4312;Dbxref=Genbank:WP_002228802.1;Name=WP_002228802.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228802.1;transl_table=11
NC_004838.1	RefSeq	gene	84753	84965	.	+	.	ID=gene4313;Name=Y_RS21655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21655
NC_004838.1	Protein Homology	CDS	84753	84965	.	+	0	ID=cds4207;Parent=gene4313;Dbxref=Genbank:WP_002228800.1;Name=WP_002228800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228800.1;transl_table=11
NC_004838.1	RefSeq	gene	85075	87441	.	+	.	ID=gene4314;Name=Y_RS21660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21660;old_locus_tag=Y1104
NC_004838.1	Protein Homology	CDS	85075	87441	.	+	0	ID=cds4208;Parent=gene4314;Dbxref=Genbank:WP_002211766.1;Name=WP_002211766.1;gbkey=CDS;product=porphyrin biosynthesis protein;protein_id=WP_002211766.1;transl_table=11
NC_004838.1	RefSeq	gene	87539	88774	.	+	.	ID=gene4315;Name=Y_RS21665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21665;old_locus_tag=Y1105
NC_004838.1	Protein Homology	CDS	87539	88774	.	+	0	ID=cds4209;Parent=gene4315;Dbxref=Genbank:WP_002211767.1;Name=WP_002211767.1;gbkey=CDS;product=porphyrin biosynthesis protein;protein_id=WP_002211767.1;transl_table=11
NC_004838.1	RefSeq	gene	88955	92479	.	+	.	ID=gene4316;Name=Y_RS21670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21670;old_locus_tag=Y1106
NC_004838.1	Protein Homology	CDS	88955	92479	.	+	0	ID=cds4210;Parent=gene4316;Dbxref=Genbank:WP_002221186.1;Name=WP_002221186.1;gbkey=CDS;product=DNA polymerase III subunit alpha;protein_id=WP_002221186.1;transl_table=11
NC_004838.1	RefSeq	gene	92476	92919	.	+	.	ID=gene4317;Name=Y_RS21675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21675;old_locus_tag=Y1107
NC_004838.1	Protein Homology	CDS	92476	92919	.	+	0	ID=cds4211;Parent=gene4317;Dbxref=Genbank:WP_002213143.1;Name=WP_002213143.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002213143.1;transl_table=11
NC_004838.1	RefSeq	gene	92949	93512	.	-	.	ID=gene4318;Name=Y_RS21680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21680;old_locus_tag=Y1108
NC_004838.1	Protein Homology	CDS	92949	93512	.	-	0	ID=cds4212;Parent=gene4318;Dbxref=Genbank:WP_002213141.1;Name=WP_002213141.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_002213141.1;transl_table=11
NC_004838.1	RefSeq	gene	93585	93836	.	-	.	ID=gene4319;Name=Y_RS21685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21685
NC_004838.1	Protein Homology	CDS	93585	93836	.	-	0	ID=cds4213;Parent=gene4319;Dbxref=Genbank:WP_002215095.1;Name=WP_002215095.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002215095.1;transl_table=11
NC_004838.1	RefSeq	gene	94057	94488	.	+	.	ID=gene4320;Name=Y_RS21690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21690;old_locus_tag=Y1109
NC_004838.1	Protein Homology	CDS	94057	94488	.	+	0	ID=cds4214;Parent=gene4320;Dbxref=Genbank:WP_011114024.1;Name=WP_011114024.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011114024.1;transl_table=11
NC_004838.1	RefSeq	gene	94608	95636	.	+	.	ID=gene4321;Name=Y_RS21695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21695;old_locus_tag=Y1110.S
NC_004838.1	Protein Homology	CDS	94608	95636	.	+	0	ID=cds4215;Parent=gene4321;Dbxref=Genbank:WP_002213132.1;Name=WP_002213132.1;gbkey=CDS;product=regulator;protein_id=WP_002213132.1;transl_table=11
NC_004838.1	RefSeq	gene	95697	96641	.	+	.	ID=gene4322;Name=Y_RS21700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21700;old_locus_tag=Y1111
NC_004838.1	Protein Homology	CDS	95697	96641	.	+	0	ID=cds4216;Parent=gene4322;Dbxref=Genbank:WP_002225551.1;Name=WP_002225551.1;gbkey=CDS;product=exonuclease;protein_id=WP_002225551.1;transl_table=11
NC_004838.1	RefSeq	gene	96641	96907	.	+	.	ID=gene4323;Name=Y_RS21705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21705;old_locus_tag=Y1112
NC_004838.1	Protein Homology	CDS	96641	96907	.	+	0	ID=cds4217;Parent=gene4323;Dbxref=Genbank:WP_000920226.1;Name=WP_000920226.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000920226.1;transl_table=11
NC_004838.1	RefSeq	gene	96910	97986	.	+	.	ID=gene4324;Name=Y_RS21710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21710;old_locus_tag=Y1113
NC_004838.1	Protein Homology	CDS	96910	97986	.	+	0	ID=cds4218;Parent=gene4324;Dbxref=Genbank:WP_002233100.1;Name=WP_002233100.1;gbkey=CDS;product=recombinase;protein_id=WP_002233100.1;transl_table=11
NC_004838.1	RefSeq	gene	98077	98277	.	+	.	ID=gene4325;Name=Y_RS21715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21715;old_locus_tag=Y1113.1N
NC_004838.1	Protein Homology	CDS	98077	98277	.	+	0	ID=cds4219;Parent=gene4325;Dbxref=Genbank:WP_002213439.1;Name=WP_002213439.1;gbkey=CDS;product=membrane protein;protein_id=WP_002213439.1;transl_table=11
NC_004838.1	RefSeq	gene	98281	99111	.	+	.	ID=gene4326;Name=Y_RS21720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21720;old_locus_tag=Y1114
NC_004838.1	Protein Homology	CDS	98281	99111	.	+	0	ID=cds4220;Parent=gene4326;Dbxref=Genbank:WP_002222866.1;Name=WP_002222866.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002222866.1;transl_table=11
NC_004838.1	RefSeq	gene	99265	99636	.	+	.	ID=gene4327;Name=Y_RS21725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21725;old_locus_tag=Y1115
NC_004838.1	Protein Homology	CDS	99265	99636	.	+	0	ID=cds4221;Parent=gene4327;Dbxref=Genbank:WP_002222868.1;Name=WP_002222868.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002222868.1;transl_table=11
NC_004838.1	RefSeq	gene	99620	100030	.	+	.	ID=gene4328;Name=Y_RS21730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21730;old_locus_tag=Y1116
NC_004838.1	Protein Homology	CDS	99620	100030	.	+	0	ID=cds4222;Parent=gene4328;Dbxref=Genbank:WP_002222869.1;Name=WP_002222869.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002222869.1;transl_table=11
NC_004838.1	RefSeq	gene	100098	100373	.	+	.	ID=gene4329;Name=Y_RS21735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21735;old_locus_tag=Y1117
NC_004838.1	Protein Homology	CDS	100098	100373	.	+	0	ID=cds4223;Parent=gene4329;Dbxref=Genbank:WP_002228797.1;Name=WP_002228797.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002228797.1;transl_table=11
NC_004838.1	RefSeq	gene	100414	100593	.	+	.	ID=gene4330;Name=Y_RS21740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21740
NC_004838.1	Protein Homology	CDS	100414	100593	.	+	0	ID=cds4224;Parent=gene4330;Dbxref=Genbank:WP_002228796.1;Name=WP_002228796.1;gbkey=CDS;product=membrane protein;protein_id=WP_002228796.1;transl_table=11
NC_004838.1	RefSeq	gene	100590	100925	.	+	.	ID=gene4331;Name=Y_RS21745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Y_RS21745;old_locus_tag=Y1118
NC_004838.1	Protein Homology	CDS	100590	100925	.	+	0	ID=cds4225;Parent=gene4331;Dbxref=Genbank:WP_002227818.1;Name=WP_002227818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_002227818.1;transl_table=11
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