locus-tag class description YPN_RS00005 PF00258 Flavodoxin YPN_RS00010 PF01037 Lrp/AsnC ligand binding domain YPN_RS00015 PF03590 Aspartate-ammonia ligase YPN_RS00020 PF05762 VWA domain containing CoxE-like protein YPN_RS00025 PF07728 AAA domain (dynein-related subfamily) YPN_RS00025 PF17868 AAA lid domain YPN_RS00025 PF12592 Protein of unknown function (DUF3763) YPN_RS00030 PF02705 K+ potassium transporter YPN_RS00035 PF05025 RbsD / FucU transport protein family YPN_RS00040 PF00294 pfkB family carbohydrate kinase YPN_RS00050 PF07690 Major Facilitator Superfamily YPN_RS00055 PF00392 Bacterial regulatory proteins, gntR family YPN_RS00055 PF07729 FCD domain YPN_RS00095 PF04204 Homoserine O-succinyltransferase YPN_RS00100 PF01274 Malate synthase YPN_RS00105 PF00463 Isocitrate lyase family YPN_RS00110 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPN_RS00115 PF01614 Bacterial transcriptional regulator YPN_RS00115 PF09339 IclR helix-turn-helix domain YPN_RS00120 PF01614 Bacterial transcriptional regulator YPN_RS00120 PF09339 IclR helix-turn-helix domain YPN_RS00125 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPN_RS00125 PF00809 Pterin binding enzyme YPN_RS00125 PF02574 Homocysteine S-methyltransferase YPN_RS00125 PF02310 B12 binding domain YPN_RS00125 PF02607 B12 binding domain YPN_RS00130 PF13332 Hemagglutinin repeat YPN_RS00130 PF05860 haemagglutination activity domain YPN_RS00135 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_RS00135 PF17287 POTRA domain YPN_RS00135 PF08479 POTRA domain, ShlB-type YPN_RS00140 PF00696 Amino acid kinase family YPN_RS00140 PF01842 ACT domain YPN_RS00145 PF00342 Phosphoglucose isomerase YPN_RS00150 PF06146 Phosphate-starvation-inducible E YPN_RS00155 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS00160 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS00160 PF14785 Maltose transport system permease protein MalF P2 domain YPN_RS00165 PF01547 Bacterial extracellular solute-binding protein YPN_RS00175 PF17912 MalK OB fold domain YPN_RS00175 PF00005 ABC transporter YPN_RS00180 PF02264 LamB porin YPN_RS00185 PF07148 Maltose operon periplasmic protein precursor (MalM) YPN_RS00195 PF05638 Type VI secretion system effector, Hcp YPN_RS00205 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPN_RS00215 PF05947 Type VI secretion system, TssF YPN_RS00220 PF13276 HTH-like domain YPN_RS00220 PF00665 Integrase core domain YPN_RS00220 PF13333 Integrase core domain YPN_RS00230 PF00311 Phosphoenolpyruvate carboxylase YPN_RS00235 PF07687 Peptidase dimerisation domain YPN_RS00235 PF01546 Peptidase family M20/M25/M40 YPN_RS00240 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPN_RS00240 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPN_RS00245 PF00696 Amino acid kinase family YPN_RS00250 PF00206 Lyase YPN_RS00250 PF14698 Argininosuccinate lyase C-terminal YPN_RS00260 PF07715 TonB-dependent Receptor Plug Domain YPN_RS00260 PF00593 TonB dependent receptor YPN_RS00270 PF00664 ABC transporter transmembrane region YPN_RS00270 PF00005 ABC transporter YPN_RS00275 PF00529 HlyD membrane-fusion protein of T1SS YPN_RS00280 PF03544 Gram-negative bacterial TonB protein C-terminal YPN_RS00285 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS00285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_RS00290 PF08534 Redoxin YPN_RS00290 PF00462 Glutaredoxin YPN_RS00295 PF03466 LysR substrate binding domain YPN_RS00295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS00300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_RS00300 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS00305 PF00440 Bacterial regulatory proteins, tetR family YPN_RS00310 PF07226 Protein of unknown function (DUF1422) YPN_RS00315 PF05958 tRNA (Uracil-5-)-methyltransferase YPN_RS00325 PF00593 TonB dependent receptor YPN_RS00325 PF07715 TonB-dependent Receptor Plug Domain YPN_RS00330 PF01177 Asp/Glu/Hydantoin racemase YPN_RS00370 PF13407 Periplasmic binding protein domain YPN_RS00375 PF00005 ABC transporter YPN_RS00380 PF02653 Branched-chain amino acid transport system / permease component YPN_RS00385 PF02653 Branched-chain amino acid transport system / permease component YPN_RS00390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS00390 PF03466 LysR substrate binding domain YPN_RS00395 PF04219 Protein of unknown function, DUF YPN_RS00400 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPN_RS00400 PF01078 Magnesium chelatase, subunit ChlI YPN_RS00405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_RS00405 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_RS00405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_RS00415 PF01063 Amino-transferase class IV YPN_RS00420 PF00920 Dehydratase family YPN_RS00425 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS00425 PF00585 C-terminal regulatory domain of Threonine dehydratase YPN_RS00455 PF03466 LysR substrate binding domain YPN_RS00455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS00460 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPN_RS00460 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPN_RS00485 PF01320 Colicin immunity protein / pyocin immunity protein YPN_RS00495 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS00495 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS00505 PF00577 Outer membrane usher protein YPN_RS00505 PF13953 PapC C-terminal domain YPN_RS00505 PF13954 PapC N-terminal domain YPN_RS00510 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS00510 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS00525 PF00872 Transposase, Mutator family YPN_RS00545 PF00580 UvrD/REP helicase N-terminal domain YPN_RS00545 PF13361 UvrD-like helicase C-terminal domain YPN_RS00550 PF02541 Ppx/GppA phosphatase family YPN_RS00555 PF02541 Ppx/GppA phosphatase family YPN_RS00560 PF00271 Helicase conserved C-terminal domain YPN_RS00560 PF00270 DEAD/DEAH box helicase YPN_RS00565 PF00085 Thioredoxin YPN_RS00570 PF07498 Rho termination factor, N-terminal domain YPN_RS00570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_RS00570 PF07497 Rho termination factor, RNA-binding domain YPN_RS00575 PF00953 Glycosyl transferase family 4 YPN_RS00580 PF02706 Chain length determinant protein YPN_RS00585 PF02350 UDP-N-acetylglucosamine 2-epimerase YPN_RS00590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPN_RS00590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPN_RS00590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPN_RS00595 PF16363 GDP-mannose 4,6 dehydratase YPN_RS00600 PF00483 Nucleotidyl transferase YPN_RS00610 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPN_RS00615 PF01943 Polysaccharide biosynthesis protein YPN_RS00620 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPN_RS00625 PF06899 WzyE protein, O-antigen assembly polymerase YPN_RS00630 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPN_RS00635 PF00324 Amino acid permease YPN_RS00665 PF07219 HemY protein N-terminus YPN_RS00665 PF07719 Tetratricopeptide repeat YPN_RS00670 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPN_RS00675 PF02602 Uroporphyrinogen-III synthase HemD YPN_RS00680 PF03900 Porphobilinogen deaminase, C-terminal domain YPN_RS00680 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPN_RS00685 PF12633 Adenylate cyclase NT domain YPN_RS00685 PF01295 Adenylate cyclase, class-I YPN_RS00690 PF01491 Frataxin-like domain YPN_RS00695 PF13627 Prokaryotic lipoprotein-attachment site YPN_RS00700 PF01678 Diaminopimelate epimerase YPN_RS00705 PF04340 Protein of unknown function, DUF484 YPN_RS00710 PF02899 Phage integrase, N-terminal SAM-like domain YPN_RS00710 PF00589 Phage integrase family YPN_RS00715 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS00720 PF13361 UvrD-like helicase C-terminal domain YPN_RS00720 PF00580 UvrD/REP helicase N-terminal domain YPN_RS00735 PF09370 Phosphoenolpyruvate hydrolase-like YPN_RS00740 PF01544 CorA-like Mg2+ transporter protein YPN_RS00745 PF00892 EamA-like transporter family YPN_RS00750 PF03061 Thioesterase superfamily YPN_RS00755 PF02253 Phospholipase A1 YPN_RS00760 PF09382 RQC domain YPN_RS00760 PF00570 HRDC domain YPN_RS00760 PF16124 RecQ zinc-binding YPN_RS00760 PF00270 DEAD/DEAH box helicase YPN_RS00760 PF00271 Helicase conserved C-terminal domain YPN_RS00765 PF01810 LysE type translocator YPN_RS00770 PF01810 LysE type translocator YPN_RS00775 PF12146 Serine aminopeptidase, S33 YPN_RS00790 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_RS00800 PF04324 BFD-like [2Fe-2S] binding domain YPN_RS00800 PF01266 FAD dependent oxidoreductase YPN_RS00805 PF00890 FAD binding domain YPN_RS00810 PF02754 Cysteine-rich domain YPN_RS00810 PF13183 4Fe-4S dicluster domain YPN_RS00815 PF08786 DcrB YPN_RS00820 PF02592 Putative vitamin uptake transporter YPN_RS00825 PF01206 Sulfurtransferase TusA YPN_RS00830 PF00403 Heavy-metal-associated domain YPN_RS00835 PF07947 YhhN family YPN_RS00850 PF06611 Protein of unknown function (DUF1145) YPN_RS00865 PF02881 SRP54-type protein, helical bundle domain YPN_RS00865 PF00448 SRP54-type protein, GTPase domain YPN_RS00865 PF02881 SRP54-type protein, helical bundle domain YPN_RS00865 PF00448 SRP54-type protein, GTPase domain YPN_RS00870 PF00005 ABC transporter YPN_RS00875 PF18075 FtsX extracellular domain YPN_RS00875 PF02687 FtsX-like permease family YPN_RS00880 PF04545 Sigma-70, region 4 YPN_RS00880 PF04542 Sigma-70 region 2 YPN_RS00880 PF00140 Sigma-70 factor, region 1.2 YPN_RS00890 PF01797 Transposase IS200 like YPN_RS00895 PF12568 Acetyltransferase (GNAT) domain, PanZ YPN_RS00900 PF13458 Periplasmic binding protein YPN_RS00905 PF02653 Branched-chain amino acid transport system / permease component YPN_RS00910 PF11862 Domain of unknown function (DUF3382) YPN_RS00910 PF02653 Branched-chain amino acid transport system / permease component YPN_RS00915 PF00005 ABC transporter YPN_RS00915 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPN_RS00920 PF00005 ABC transporter YPN_RS00960 PF13416 Bacterial extracellular solute-binding protein YPN_RS00965 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS00970 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS00975 PF00005 ABC transporter YPN_RS00975 PF17912 MalK OB fold domain YPN_RS00980 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_RS00985 PF03547 Membrane transport protein YPN_RS00990 PF00892 EamA-like transporter family YPN_RS00995 PF03466 LysR substrate binding domain YPN_RS00995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS01000 PF08267 Cobalamin-independent synthase, N-terminal domain YPN_RS01000 PF01717 Cobalamin-independent synthase, Catalytic domain YPN_RS01005 PF01738 Dienelactone hydrolase family YPN_RS01010 PF01048 Phosphorylase superfamily YPN_RS01020 PF02554 Carbon starvation protein CstA YPN_RS01020 PF13722 5TM C-terminal transporter carbon starvation CstA YPN_RS01025 PF09335 SNARE associated Golgi protein YPN_RS01030 PF02646 RmuC family YPN_RS01035 PF01209 ubiE/COQ5 methyltransferase family YPN_RS01040 PF02036 SCP-2 sterol transfer family YPN_RS01045 PF03109 ABC1 family YPN_RS01050 PF02416 mttA/Hcf106 family YPN_RS01060 PF00902 Sec-independent protein translocase protein (TatC) YPN_RS01065 PF01026 TatD related DNase YPN_RS01070 PF02796 Helix-turn-helix domain of resolvase YPN_RS01070 PF00665 Integrase core domain YPN_RS01075 PF01695 IstB-like ATP binding protein YPN_RS01080 PF01026 TatD related DNase YPN_RS01085 PF00490 Delta-aminolevulinic acid dehydratase YPN_RS01090 PF02357 Transcription termination factor nusG YPN_RS01095 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPN_RS01100 PF00175 Oxidoreductase NAD-binding domain YPN_RS01100 PF00970 Oxidoreductase FAD-binding domain YPN_RS01105 PF02803 Thiolase, C-terminal domain YPN_RS01105 PF00108 Thiolase, N-terminal domain YPN_RS01110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPN_RS01110 PF00378 Enoyl-CoA hydratase/isomerase YPN_RS01110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPN_RS01115 PF00557 Metallopeptidase family M24 YPN_RS01120 PF01205 Uncharacterized protein family UPF0029 YPN_RS01120 PF09186 Domain of unknown function (DUF1949) YPN_RS01130 PF01205 Uncharacterized protein family UPF0029 YPN_RS01130 PF09186 Domain of unknown function (DUF1949) YPN_RS01135 PF02386 Cation transport protein YPN_RS01140 PF12724 Flavodoxin domain YPN_RS01170 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPN_RS01170 PF01565 FAD binding domain YPN_RS01175 PF02237 Biotin protein ligase C terminal domain YPN_RS01175 PF08279 HTH domain YPN_RS01175 PF03099 Biotin/lipoate A/B protein ligase family YPN_RS01180 PF00485 Phosphoribulokinase / Uridine kinase family YPN_RS01185 PF13673 Acetyltransferase (GNAT) domain YPN_RS01190 PF02796 Helix-turn-helix domain of resolvase YPN_RS01190 PF00665 Integrase core domain YPN_RS01195 PF01695 IstB-like ATP binding protein YPN_RS01225 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPN_RS01230 PF00467 KOW motif YPN_RS01230 PF02357 Transcription termination factor nusG YPN_RS01235 PF00298 Ribosomal protein L11, RNA binding domain YPN_RS01235 PF03946 Ribosomal protein L11, N-terminal domain YPN_RS01240 PF00687 Ribosomal protein L1p/L10e family YPN_RS01245 PF00466 Ribosomal protein L10 YPN_RS01250 PF16320 Ribosomal protein L7/L12 dimerisation domain YPN_RS01250 PF00542 Ribosomal protein L7/L12 C-terminal domain YPN_RS01255 PF04563 RNA polymerase beta subunit YPN_RS01255 PF04561 RNA polymerase Rpb2, domain 2 YPN_RS01255 PF04560 RNA polymerase Rpb2, domain 7 YPN_RS01255 PF00562 RNA polymerase Rpb2, domain 6 YPN_RS01255 PF04565 RNA polymerase Rpb2, domain 3 YPN_RS01255 PF10385 RNA polymerase beta subunit external 1 domain YPN_RS01260 PF04983 RNA polymerase Rpb1, domain 3 YPN_RS01260 PF05000 RNA polymerase Rpb1, domain 4 YPN_RS01260 PF00623 RNA polymerase Rpb1, domain 2 YPN_RS01260 PF04997 RNA polymerase Rpb1, domain 1 YPN_RS01260 PF04998 RNA polymerase Rpb1, domain 5 YPN_RS01265 PF01797 Transposase IS200 like YPN_RS01280 PF04055 Radical SAM superfamily YPN_RS01280 PF06968 Biotin and Thiamin Synthesis associated domain YPN_RS01285 PF05690 Thiazole biosynthesis protein ThiG YPN_RS01295 PF00899 ThiF family YPN_RS01300 PF02581 Thiamine monophosphate synthase YPN_RS01305 PF13667 ThiC-associated domain YPN_RS01305 PF01964 Radical SAM ThiC family YPN_RS01315 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPN_RS01320 PF09297 NADH pyrophosphatase zinc ribbon domain YPN_RS01320 PF00293 NUDIX domain YPN_RS01330 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPN_RS01335 PF04493 Endonuclease V YPN_RS01340 PF04222 Protein of unknown function (DUF416) YPN_RS01345 PF00216 Bacterial DNA-binding protein YPN_RS01350 PF07356 Protein of unknown function (DUF1481) YPN_RS01355 PF02844 Phosphoribosylglycinamide synthetase, N domain YPN_RS01355 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPN_RS01355 PF02843 Phosphoribosylglycinamide synthetase, C domain YPN_RS01360 PF01808 AICARFT/IMPCHase bienzyme YPN_RS01360 PF02142 MGS-like domain YPN_RS01395 PF00872 Transposase, Mutator family YPN_RS01400 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPN_RS01405 PF12804 MobA-like NTP transferase domain YPN_RS01410 PF06288 Protein of unknown function (DUF1040) YPN_RS01415 PF01636 Phosphotransferase enzyme family YPN_RS01420 PF01323 DSBA-like thioredoxin domain YPN_RS01425 PF01612 3'-5' exonuclease YPN_RS01425 PF00476 DNA polymerase family A YPN_RS01425 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPN_RS01425 PF01367 5'-3' exonuclease, C-terminal SAM fold YPN_RS01435 PF01797 Transposase IS200 like YPN_RS01440 PF01926 50S ribosome-binding GTPase YPN_RS01445 PF04220 Der GTPase activator (YihI) YPN_RS01450 PF04055 Radical SAM superfamily YPN_RS01450 PF06969 HemN C-terminal domain YPN_RS01455 PF00158 Sigma-54 interaction domain YPN_RS01455 PF00072 Response regulator receiver domain YPN_RS01455 PF02954 Bacterial regulatory protein, Fis family YPN_RS01460 PF00989 PAS fold YPN_RS01460 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS01460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS01465 PF03951 Glutamine synthetase, beta-Grasp domain YPN_RS01465 PF00120 Glutamine synthetase, catalytic domain YPN_RS01475 PF00679 Elongation factor G C-terminus YPN_RS01475 PF00009 Elongation factor Tu GTP binding domain YPN_RS01475 PF03144 Elongation factor Tu domain 2 YPN_RS01480 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS01485 PF03631 Virulence factor BrkB YPN_RS01490 PF02580 D-Tyr-tRNA(Tyr) deacylase YPN_RS01495 PF01695 IstB-like ATP binding protein YPN_RS01500 PF00665 Integrase core domain YPN_RS01500 PF02796 Helix-turn-helix domain of resolvase YPN_RS01505 PF12102 Domain of unknown function (DUF3578) YPN_RS01505 PF07728 AAA domain (dynein-related subfamily) YPN_RS01520 PF01527 Transposase YPN_RS01525 PF01555 DNA methylase YPN_RS01550 PF00665 Integrase core domain YPN_RS01575 PF05987 Bacterial protein of unknown function (DUF898) YPN_RS01585 PF12833 Helix-turn-helix domain YPN_RS01590 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_RS01595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_RS01605 PF05524 PEP-utilising enzyme, N-terminal YPN_RS01605 PF02896 PEP-utilising enzyme, TIM barrel domain YPN_RS01605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_RS01605 PF00381 PTS HPr component phosphorylation site YPN_RS01605 PF00391 PEP-utilising enzyme, mobile domain YPN_RS01610 PF10696 Protein of unknown function (DUF2501) YPN_RS01615 PF03992 Antibiotic biosynthesis monooxygenase YPN_RS01620 PF01791 DeoC/LacD family aldolase YPN_RS01625 PF13407 Periplasmic binding protein domain YPN_RS01630 PF02653 Branched-chain amino acid transport system / permease component YPN_RS01635 PF02653 Branched-chain amino acid transport system / permease component YPN_RS01640 PF00005 ABC transporter YPN_RS01655 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS01655 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_RS01660 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPN_RS01680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS01685 PF00873 AcrB/AcrD/AcrF family YPN_RS01705 PF01095 Pectinesterase YPN_RS01710 PF00990 Diguanylate cyclase, GGDEF domain YPN_RS01715 PF07256 Protein of unknown function (DUF1435) YPN_RS01725 PF05175 Methyltransferase small domain YPN_RS01725 PF08468 Methyltransferase small domain N-terminal YPN_RS01730 PF03603 DNA polymerase III psi subunit YPN_RS01735 PF00583 Acetyltransferase (GNAT) family YPN_RS01740 PF16658 Class II release factor RF3, C-terminal domain YPN_RS01740 PF00009 Elongation factor Tu GTP binding domain YPN_RS01740 PF03144 Elongation factor Tu domain 2 YPN_RS01745 PF04972 BON domain YPN_RS01750 PF07043 Protein of unknown function (DUF1328) YPN_RS01755 PF01734 Patatin-like phospholipase YPN_RS01760 PF01026 TatD related DNase YPN_RS01765 PF07670 Nucleoside recognition YPN_RS01765 PF07662 Na+ dependent nucleoside transporter C-terminus YPN_RS01765 PF01773 Na+ dependent nucleoside transporter N-terminus YPN_RS01770 PF01791 DeoC/LacD family aldolase YPN_RS01775 PF02885 Glycosyl transferase family, helical bundle domain YPN_RS01775 PF00591 Glycosyl transferase family, a/b domain YPN_RS01775 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPN_RS01780 PF02885 Glycosyl transferase family, helical bundle domain YPN_RS01780 PF00591 Glycosyl transferase family, a/b domain YPN_RS01780 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPN_RS01785 PF01676 Metalloenzyme superfamily YPN_RS01790 PF01048 Phosphorylase superfamily YPN_RS01795 PF10144 Bacterial virulence factor haemolysin YPN_RS01800 PF18429 Domain of unknown function (DUF5609) YPN_RS01805 PF18073 Rubredoxin metal binding domain YPN_RS01810 PF13521 AAA domain YPN_RS01810 PF01381 Helix-turn-helix YPN_RS01815 PF02661 Fic/DOC family YPN_RS01825 PF00691 OmpA family YPN_RS01830 PF00990 Diguanylate cyclase, GGDEF domain YPN_RS01830 PF17152 Periplasmic sensor domain YPN_RS01840 PF00689 Cation transporting ATPase, C-terminus YPN_RS01840 PF00690 Cation transporter/ATPase, N-terminus YPN_RS01845 PF14718 Soluble lytic murein transglycosylase L domain YPN_RS01845 PF01464 Transglycosylase SLT domain YPN_RS01850 PF01371 Trp repressor protein YPN_RS01855 PF01931 Protein of unknown function DUF84 YPN_RS01860 PF00300 Histidine phosphatase superfamily (branch 1) YPN_RS01865 PF12833 Helix-turn-helix domain YPN_RS01865 PF06445 GyrI-like small molecule binding domain YPN_RS01870 PF05981 CreA protein YPN_RS01875 PF00486 Transcriptional regulatory protein, C terminal YPN_RS01875 PF00072 Response regulator receiver domain YPN_RS01880 PF00696 Amino acid kinase family YPN_RS01880 PF01842 ACT domain YPN_RS01880 PF00742 Homoserine dehydrogenase YPN_RS01880 PF13840 ACT domain YPN_RS01880 PF03447 Homoserine dehydrogenase, NAD binding domain YPN_RS01885 PF00288 GHMP kinases N terminal domain YPN_RS01885 PF08544 GHMP kinases C terminal YPN_RS01890 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS01890 PF14821 Threonine synthase N terminus YPN_RS01895 PF03883 Peroxide stress protein YaaA YPN_RS01900 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPN_RS01905 PF00994 Probable molybdopterin binding domain YPN_RS01910 PF07690 Major Facilitator Superfamily YPN_RS01920 PF01184 GPR1/FUN34/yaaH family YPN_RS01925 PF00012 Hsp70 protein YPN_RS01930 PF00684 DnaJ central domain YPN_RS01930 PF01556 DnaJ C terminal domain YPN_RS01930 PF00226 DnaJ domain YPN_RS01935 PF06965 Na+/H+ antiporter 1 YPN_RS01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS01940 PF03466 LysR substrate binding domain YPN_RS01945 PF01649 Ribosomal protein S20 YPN_RS01955 PF06574 FAD synthetase YPN_RS01955 PF01687 Riboflavin kinase YPN_RS01960 PF06827 Zinc finger found in FPG and IleRS YPN_RS01960 PF08264 Anticodon-binding domain of tRNA YPN_RS01960 PF00133 tRNA synthetases class I (I, L, M and V) YPN_RS01965 PF01252 Signal peptidase (SPase) II YPN_RS01970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_RS01975 PF02401 LytB protein YPN_RS01990 PF01797 Transposase IS200 like YPN_RS01995 PF01113 Dihydrodipicolinate reductase, N-terminus YPN_RS01995 PF05173 Dihydrodipicolinate reductase, C-terminus YPN_RS02000 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPN_RS02000 PF00117 Glutamine amidotransferase class-I YPN_RS02005 PF02142 MGS-like domain YPN_RS02005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPN_RS02005 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPN_RS02010 PF01810 LysE type translocator YPN_RS02015 PF06738 Putative threonine/serine exporter YPN_RS02020 PF12821 Threonine/Serine exporter, ThrE YPN_RS02025 PF00186 Dihydrofolate reductase YPN_RS02030 PF01797 Transposase IS200 like YPN_RS02045 PF00149 Calcineurin-like phosphoesterase YPN_RS02050 PF04379 ApaG domain YPN_RS02055 PF00398 Ribosomal RNA adenine dimethylase YPN_RS02060 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPN_RS02065 PF09312 SurA N-terminal domain YPN_RS02065 PF00639 PPIC-type PPIASE domain YPN_RS02070 PF03968 OstA-like protein YPN_RS02070 PF04453 LPS transport system D YPN_RS02075 PF05099 Tellurite resistance protein TerB YPN_RS02075 PF00226 DnaJ domain YPN_RS02080 PF00849 RNA pseudouridylate synthase YPN_RS02095 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPN_RS02100 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPN_RS02115 PF05947 Type VI secretion system, TssF YPN_RS02125 PF07724 AAA domain (Cdc48 subfamily) YPN_RS02125 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS02125 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS02125 PF17871 AAA lid domain YPN_RS02130 PF04717 Type VI secretion system, phage-baseplate injector YPN_RS02130 PF06715 Gp5 C-terminal repeat (3 copies) YPN_RS02160 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPN_RS02165 PF05736 OprF membrane domain YPN_RS02165 PF00691 OmpA family YPN_RS02170 PF06761 Intracellular multiplication and human macrophage-killing YPN_RS02170 PF14331 ImcF-related N-terminal domain YPN_RS02170 PF06744 Type VI secretion protein IcmF C-terminal YPN_RS02180 PF00271 Helicase conserved C-terminal domain YPN_RS02180 PF12137 RNA polymerase recycling family C-terminal YPN_RS02180 PF00176 SNF2 family N-terminal domain YPN_RS02180 PF18339 RapA N-terminal Tudor like domain 1 YPN_RS02180 PF18337 RapA N-terminal Tudor like domain YPN_RS02185 PF03104 DNA polymerase family B, exonuclease domain YPN_RS02185 PF00136 DNA polymerase family B YPN_RS02190 PF09335 SNARE associated Golgi protein YPN_RS02195 PF00005 ABC transporter YPN_RS02200 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS02215 PF12793 Sugar transport-related sRNA regulator N-term YPN_RS02215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_RS02225 PF07690 Major Facilitator Superfamily YPN_RS02230 PF00694 Aconitase C-terminal domain YPN_RS02235 PF00330 Aconitase family (aconitate hydratase) YPN_RS02240 PF00180 Isocitrate/isopropylmalate dehydrogenase YPN_RS02245 PF08502 LeuA allosteric (dimerisation) domain YPN_RS02245 PF00682 HMGL-like YPN_RS02250 PF01797 Transposase IS200 like YPN_RS02260 PF03466 LysR substrate binding domain YPN_RS02260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS02270 PF00501 AMP-binding enzyme YPN_RS02280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_RS02280 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_RS02280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_RS02285 PF10369 Small subunit of acetolactate synthase YPN_RS02290 PF01797 Transposase IS200 like YPN_RS02300 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_RS02300 PF00356 Bacterial regulatory proteins, lacI family YPN_RS02305 PF06610 L-alanine exporter YPN_RS02310 PF02381 MraZ protein, putative antitoxin-like YPN_RS02315 PF01795 MraW methylase family YPN_RS02320 PF04999 Cell division protein FtsL YPN_RS02325 PF03717 Penicillin-binding Protein dimerisation domain YPN_RS02325 PF00905 Penicillin binding protein transpeptidase domain YPN_RS02330 PF02875 Mur ligase family, glutamate ligase domain YPN_RS02330 PF08245 Mur ligase middle domain YPN_RS02330 PF01225 Mur ligase family, catalytic domain YPN_RS02335 PF02875 Mur ligase family, glutamate ligase domain YPN_RS02335 PF01225 Mur ligase family, catalytic domain YPN_RS02335 PF08245 Mur ligase middle domain YPN_RS02340 PF00953 Glycosyl transferase family 4 YPN_RS02340 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPN_RS02345 PF08245 Mur ligase middle domain YPN_RS02345 PF02875 Mur ligase family, glutamate ligase domain YPN_RS02350 PF01098 Cell cycle protein YPN_RS02355 PF03033 Glycosyltransferase family 28 N-terminal domain YPN_RS02355 PF04101 Glycosyltransferase family 28 C-terminal domain YPN_RS02360 PF01225 Mur ligase family, catalytic domain YPN_RS02360 PF02875 Mur ligase family, glutamate ligase domain YPN_RS02360 PF08245 Mur ligase middle domain YPN_RS02365 PF07478 D-ala D-ala ligase C-terminus YPN_RS02365 PF01820 D-ala D-ala ligase N-terminus YPN_RS02370 PF03799 Cell division protein FtsQ YPN_RS02370 PF08478 POTRA domain, FtsQ-type YPN_RS02375 PF02491 SHS2 domain inserted in FTSA YPN_RS02380 PF00091 Tubulin/FtsZ family, GTPase domain YPN_RS02380 PF12327 FtsZ family, C-terminal domain YPN_RS02385 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPN_RS02395 PF06558 Secretion monitor precursor protein (SecM) YPN_RS02400 PF07516 SecA Wing and Scaffold domain YPN_RS02400 PF07517 SecA DEAD-like domain YPN_RS02400 PF01043 SecA preprotein cross-linking domain YPN_RS02400 PF02810 SEC-C motif YPN_RS02405 PF00293 NUDIX domain YPN_RS02410 PF01695 IstB-like ATP binding protein YPN_RS02415 PF00665 Integrase core domain YPN_RS02415 PF02796 Helix-turn-helix domain of resolvase YPN_RS02420 PF13409 Glutathione S-transferase, N-terminal domain YPN_RS02425 PF07681 DoxX YPN_RS02435 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPN_RS02440 PF05957 Bacterial protein of unknown function (DUF883) YPN_RS02455 PF13721 SecD export protein N-terminal TM region YPN_RS02460 PF09335 SNARE associated Golgi protein YPN_RS02470 PF00392 Bacterial regulatory proteins, gntR family YPN_RS02470 PF07729 FCD domain YPN_RS02475 PF07690 Major Facilitator Superfamily YPN_RS02485 PF02614 Glucuronate isomerase YPN_RS02490 PF02614 Glucuronate isomerase YPN_RS02495 PF01232 Mannitol dehydrogenase Rossmann domain YPN_RS02495 PF08125 Mannitol dehydrogenase C-terminal domain YPN_RS02500 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPN_RS02500 PF08666 SAF domain YPN_RS02505 PF10688 Bacterial inner membrane protein YPN_RS02510 PF01797 Transposase IS200 like YPN_RS02515 PF00375 Sodium:dicarboxylate symporter family YPN_RS02520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_RS02525 PF01863 Protein of unknown function DUF45 YPN_RS02530 PF03797 Autotransporter beta-domain YPN_RS02535 PF05175 Methyltransferase small domain YPN_RS02540 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS02540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPN_RS02545 PF03729 Short repeat of unknown function (DUF308) YPN_RS02565 PF00092 von Willebrand factor type A domain YPN_RS02575 PF02342 TerD domain YPN_RS02580 PF00092 von Willebrand factor type A domain YPN_RS02585 PF17287 POTRA domain YPN_RS02585 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_RS02585 PF08479 POTRA domain, ShlB-type YPN_RS02590 PF05860 haemagglutination activity domain YPN_RS02590 PF13332 Hemagglutinin repeat YPN_RS02590 PF04829 Pre-toxin domain with VENN motif YPN_RS02590 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS02595 PF04829 Pre-toxin domain with VENN motif YPN_RS02595 PF05860 haemagglutination activity domain YPN_RS02595 PF13332 Hemagglutinin repeat YPN_RS02595 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS02615 PF00005 ABC transporter YPN_RS02615 PF03459 TOBE domain YPN_RS02615 PF17912 MalK OB fold domain YPN_RS02620 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPN_RS02625 PF00356 Bacterial regulatory proteins, lacI family YPN_RS02630 PF01547 Bacterial extracellular solute-binding protein YPN_RS02635 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS02640 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS02650 PF14310 Fibronectin type III-like domain YPN_RS02650 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPN_RS02650 PF00933 Glycosyl hydrolase family 3 N terminal domain YPN_RS02660 PF04632 Fusaric acid resistance protein family YPN_RS02665 PF00529 HlyD membrane-fusion protein of T1SS YPN_RS02665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS02685 PF00155 Aminotransferase class I and II YPN_RS02705 PF01042 Endoribonuclease L-PSP YPN_RS02725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS02725 PF03466 LysR substrate binding domain YPN_RS02785 PF04539 Sigma-70 region 3 YPN_RS02785 PF03979 Sigma-70 factor, region 1.1 YPN_RS02785 PF00140 Sigma-70 factor, region 1.2 YPN_RS02785 PF04545 Sigma-70, region 4 YPN_RS02785 PF04546 Sigma-70, non-essential region YPN_RS02785 PF04542 Sigma-70 region 2 YPN_RS02790 PF08278 DNA primase DnaG DnaB-binding YPN_RS02790 PF08275 DNA primase catalytic core, N-terminal domain YPN_RS02790 PF10410 DnaB-helicase binding domain of primase YPN_RS02790 PF01807 CHC2 zinc finger YPN_RS02795 PF01165 Ribosomal protein S21 YPN_RS02800 PF00814 Glycoprotease family YPN_RS02805 PF02660 Glycerol-3-phosphate acyltransferase YPN_RS02810 PF02152 Dihydroneopterin aldolase YPN_RS02815 PF02673 Bacitracin resistance protein BacA YPN_RS02820 PF01966 HD domain YPN_RS02820 PF01743 Poly A polymerase head domain YPN_RS02820 PF12627 Probable RNA and SrmB- binding site of polymerase A YPN_RS02825 PF08239 Bacterial SH3 domain YPN_RS02830 PF01928 CYTH domain YPN_RS02835 PF08335 GlnD PII-uridylyltransferase YPN_RS02835 PF03710 Glutamate-ammonia ligase adenylyltransferase YPN_RS02840 PF00294 pfkB family carbohydrate kinase YPN_RS02840 PF01467 Cytidylyltransferase-like YPN_RS02845 PF13520 Amino acid permease YPN_RS02850 PF04380 Membrane fusogenic activity YPN_RS02860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPN_RS02865 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPN_RS02870 PF03738 Glutathionylspermidine synthase preATP-grasp YPN_RS02875 PF06693 Protein of unknown function (DUF1190) YPN_RS02885 PF02321 Outer membrane efflux protein YPN_RS02890 PF00293 NUDIX domain YPN_RS02895 PF06853 Protein of unknown function (DUF1249) YPN_RS02900 PF00149 Calcineurin-like phosphoesterase YPN_RS02905 PF05728 Uncharacterised protein family (UPF0227) YPN_RS02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS02910 PF00204 DNA gyrase B YPN_RS02910 PF01751 Toprim domain YPN_RS02910 PF00986 DNA gyrase B subunit, carboxyl terminus YPN_RS02915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS02915 PF03466 LysR substrate binding domain YPN_RS02920 PF02525 Flavodoxin-like fold YPN_RS02925 PF03989 DNA gyrase C-terminal domain, beta-propeller YPN_RS02925 PF00521 DNA gyrase/topoisomerase IV, subunit A YPN_RS02930 PF01553 Acyltransferase YPN_RS02935 PF07732 Multicopper oxidase YPN_RS02935 PF07731 Multicopper oxidase YPN_RS02945 PF00248 Aldo/keto reductase family YPN_RS02955 PF00465 Iron-containing alcohol dehydrogenase YPN_RS02960 PF06719 AraC-type transcriptional regulator N-terminus YPN_RS02960 PF12833 Helix-turn-helix domain YPN_RS02965 PF09335 SNARE associated Golgi protein YPN_RS02970 PF01053 Cys/Met metabolism PLP-dependent enzyme YPN_RS02975 PF01618 MotA/TolQ/ExbB proton channel family YPN_RS02980 PF02472 Biopolymer transport protein ExbD/TolR YPN_RS03015 PF00437 Type II/IV secretion system protein YPN_RS03030 PF13629 Pilus formation protein N terminal region YPN_RS03030 PF00263 Bacterial type II and III secretion system protein YPN_RS03030 PF04972 BON domain YPN_RS03035 PF13629 Pilus formation protein N terminal region YPN_RS03035 PF00263 Bacterial type II and III secretion system protein YPN_RS03035 PF04972 BON domain YPN_RS03055 PF00577 Outer membrane usher protein YPN_RS03055 PF13954 PapC N-terminal domain YPN_RS03055 PF13953 PapC C-terminal domain YPN_RS03060 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS03060 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS03065 PF00419 Fimbrial protein YPN_RS03065 PF09222 Fimbrial adhesin F17-AG, lectin domain YPN_RS03070 PF01497 Periplasmic binding protein YPN_RS03090 PF01312 FlhB HrpN YscU SpaS Family YPN_RS03095 PF01311 Bacterial export proteins, family 1 YPN_RS03100 PF01313 Bacterial export proteins, family 3 YPN_RS03105 PF00813 FliP family YPN_RS03110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPN_RS03120 PF00072 Response regulator receiver domain YPN_RS03120 PF02954 Bacterial regulatory protein, Fis family YPN_RS03120 PF00158 Sigma-54 interaction domain YPN_RS03125 PF02049 Flagellar hook-basal body complex protein FliE YPN_RS03130 PF01514 Secretory protein of YscJ/FliF family YPN_RS03130 PF08345 Flagellar M-ring protein C-terminal YPN_RS03145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_RS03145 PF18269 T3SS EscN ATPase C-terminal domain YPN_RS03165 PF13144 Chaperone for flagella basal body P-ring formation YPN_RS03170 PF00460 Flagella basal body rod protein YPN_RS03175 PF00460 Flagella basal body rod protein YPN_RS03175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS03180 PF03963 Flagellar hook capping protein - N-terminal region YPN_RS03180 PF13861 FlgD Tudor-like domain YPN_RS03180 PF13860 FlgD Ig-like domain YPN_RS03185 PF07559 Flagellar basal body protein FlaE YPN_RS03185 PF00460 Flagella basal body rod protein YPN_RS03185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS03190 PF00460 Flagella basal body rod protein YPN_RS03190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS03195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS03195 PF00460 Flagella basal body rod protein YPN_RS03200 PF02107 Flagellar L-ring protein YPN_RS03205 PF02119 Flagellar P-ring protein YPN_RS03215 PF00460 Flagella basal body rod protein YPN_RS03215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS03235 PF18500 CadC C-terminal domain 1 YPN_RS03235 PF00486 Transcriptional regulatory protein, C terminal YPN_RS03240 PF00669 Bacterial flagellin N-terminal helical region YPN_RS03240 PF00700 Bacterial flagellin C-terminal helical region YPN_RS03250 PF00665 Integrase core domain YPN_RS03250 PF13333 Integrase core domain YPN_RS03250 PF13276 HTH-like domain YPN_RS03255 PF00575 S1 RNA binding domain YPN_RS03255 PF03725 3' exoribonuclease family, domain 2 YPN_RS03255 PF01138 3' exoribonuclease family, domain 1 YPN_RS03255 PF00013 KH domain YPN_RS03255 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPN_RS03260 PF13181 Tetratricopeptide repeat YPN_RS03260 PF07719 Tetratricopeptide repeat YPN_RS03265 PF03880 DbpA RNA binding domain YPN_RS03265 PF00270 DEAD/DEAH box helicase YPN_RS03265 PF12343 Cold shock protein DEAD box A YPN_RS03265 PF00271 Helicase conserved C-terminal domain YPN_RS03280 PF01381 Helix-turn-helix YPN_RS03285 PF00296 Luciferase-like monooxygenase YPN_RS03290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS03290 PF00529 HlyD membrane-fusion protein of T1SS YPN_RS03295 PF00873 AcrB/AcrD/AcrF family YPN_RS03300 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPN_RS03300 PF02321 Outer membrane efflux protein YPN_RS03305 PF01136 Peptidase family U32 YPN_RS03310 PF01136 Peptidase family U32 YPN_RS03320 PF02036 SCP-2 sterol transfer family YPN_RS03325 PF13508 Acetyltransferase (GNAT) domain YPN_RS03330 PF01541 GIY-YIG catalytic domain YPN_RS03345 PF13416 Bacterial extracellular solute-binding protein YPN_RS03350 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS03355 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS03360 PF00005 ABC transporter YPN_RS03360 PF03459 TOBE domain YPN_RS03360 PF17912 MalK OB fold domain YPN_RS03375 PF13460 NAD(P)H-binding YPN_RS03380 PF12706 Beta-lactamase superfamily domain YPN_RS03390 PF07969 Amidohydrolase family YPN_RS03395 PF00005 ABC transporter YPN_RS03400 PF00005 ABC transporter YPN_RS03405 PF06007 Phosphonate metabolism protein PhnJ YPN_RS03410 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPN_RS03415 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPN_RS03420 PF06754 Phosphonate metabolism protein PhnG YPN_RS03425 PF07702 UTRA domain YPN_RS03425 PF00392 Bacterial regulatory proteins, gntR family YPN_RS03435 PF03477 ATP cone domain YPN_RS03435 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPN_RS03440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_RS03440 PF00005 ABC transporter YPN_RS03445 PF00005 ABC transporter YPN_RS03445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_RS03450 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS03450 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_RS03455 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS03465 PF04074 YhcH/YjgK/YiaL YPN_RS03470 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPN_RS03470 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPN_RS03475 PF06877 Regulator of ribonuclease activity B YPN_RS03480 PF00583 Acetyltransferase (GNAT) family YPN_RS03485 PF08264 Anticodon-binding domain of tRNA YPN_RS03485 PF10458 Valyl tRNA synthetase tRNA binding arm YPN_RS03485 PF00133 tRNA synthetases class I (I, L, M and V) YPN_RS03490 PF04364 DNA polymerase III chi subunit, HolC YPN_RS03495 PF02789 Cytosol aminopeptidase family, N-terminal domain YPN_RS03495 PF00883 Cytosol aminopeptidase family, catalytic domain YPN_RS03500 PF03739 Lipopolysaccharide export system permease LptF/LptG YPN_RS03505 PF03739 Lipopolysaccharide export system permease LptF/LptG YPN_RS03525 PF00589 Phage integrase family YPN_RS03525 PF13356 Arm DNA-binding domain YPN_RS03535 PF01119 DNA mismatch repair protein, C-terminal domain YPN_RS03535 PF08676 MutL C terminal dimerisation domain YPN_RS03540 PF01695 IstB-like ATP binding protein YPN_RS03545 PF02796 Helix-turn-helix domain of resolvase YPN_RS03545 PF00665 Integrase core domain YPN_RS03555 PF03884 DNA gyrase inhibitor YacG YPN_RS03560 PF07072 Cell division protein YPN_RS03565 PF01121 Dephospho-CoA kinase YPN_RS03575 PF00478 IMP dehydrogenase / GMP reductase domain YPN_RS03580 PF00482 Type II secretion system (T2SS), protein F YPN_RS03585 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPN_RS03585 PF00437 Type II/IV secretion system protein YPN_RS03590 PF07963 Prokaryotic N-terminal methylation motif YPN_RS03595 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPN_RS03595 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPN_RS03600 PF01510 N-acetylmuramoyl-L-alanine amidase YPN_RS03605 PF17113 Regulatory signalling modulator protein AmpE YPN_RS03610 PF00324 Amino acid permease YPN_RS03615 PF07729 FCD domain YPN_RS03615 PF00392 Bacterial regulatory proteins, gntR family YPN_RS03620 PF00456 Transketolase, thiamine diphosphate binding domain YPN_RS03620 PF17831 Pyruvate dehydrogenase E1 component middle domain YPN_RS03625 PF00364 Biotin-requiring enzyme YPN_RS03625 PF02817 e3 binding domain YPN_RS03625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPN_RS03630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_RS03630 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS03640 PF01797 Transposase IS200 like YPN_RS03645 PF00330 Aconitase family (aconitate hydratase) YPN_RS03645 PF06434 Aconitate hydratase 2 N-terminus YPN_RS03645 PF11791 Aconitate B N-terminal domain YPN_RS03650 PF06062 Uncharacterised protein family (UPF0231) YPN_RS03655 PF00892 EamA-like transporter family YPN_RS03660 PF02675 S-adenosylmethionine decarboxylase YPN_RS03665 PF17284 Spermidine synthase tetramerisation domain YPN_RS03670 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPN_RS03675 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPN_RS03675 PF07732 Multicopper oxidase YPN_RS03675 PF07731 Multicopper oxidase YPN_RS03675 PF00394 Multicopper oxidase YPN_RS03680 PF00156 Phosphoribosyl transferase domain YPN_RS03685 PF00484 Carbonic anhydrase YPN_RS03690 PF00005 ABC transporter YPN_RS03695 PF01061 ABC-2 type transporter YPN_RS03705 PF02261 Aspartate decarboxylase YPN_RS03710 PF02569 Pantoate-beta-alanine ligase YPN_RS03715 PF02548 Ketopantoate hydroxymethyltransferase YPN_RS03720 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPN_RS03725 PF12627 Probable RNA and SrmB- binding site of polymerase A YPN_RS03725 PF01743 Poly A polymerase head domain YPN_RS03725 PF12626 Polymerase A arginine-rich C-terminus YPN_RS03730 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPN_RS03735 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPN_RS03740 PF17746 SfsA N-terminal OB domain YPN_RS03740 PF03749 Sugar fermentation stimulation protein RE domain YPN_RS03745 PF02834 LigT like Phosphoesterase YPN_RS03750 PF08482 ATP-dependent helicase C-terminal YPN_RS03750 PF00270 DEAD/DEAH box helicase YPN_RS03750 PF00271 Helicase conserved C-terminal domain YPN_RS03750 PF04408 Helicase associated domain (HA2) YPN_RS03755 PF00905 Penicillin binding protein transpeptidase domain YPN_RS03755 PF14814 Bifunctional transglycosylase second domain YPN_RS03755 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPN_RS03755 PF00912 Transglycosylase YPN_RS03760 PF00005 ABC transporter YPN_RS03765 PF01497 Periplasmic binding protein YPN_RS03770 PF01032 FecCD transport family YPN_RS03775 PF00202 Aminotransferase class-III YPN_RS03780 PF00654 Voltage gated chloride channel YPN_RS03785 PF01521 Iron-sulphur cluster biosynthesis YPN_RS03790 PF03458 UPF0126 domain YPN_RS03795 PF01497 Periplasmic binding protein YPN_RS03800 PF01048 Phosphorylase superfamily YPN_RS03805 PF01966 HD domain YPN_RS03805 PF13286 Phosphohydrolase-associated domain YPN_RS03810 PF00595 PDZ domain YPN_RS03815 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS03815 PF01627 Hpt domain YPN_RS03815 PF00072 Response regulator receiver domain YPN_RS03815 PF00672 HAMP domain YPN_RS03815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPN_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS03820 PF02824 TGS domain YPN_RS03820 PF04607 Region found in RelA / SpoT proteins YPN_RS03820 PF13291 ACT domain YPN_RS03830 PF03819 MazG nucleotide pyrophosphohydrolase domain YPN_RS03835 PF00117 Glutamine amidotransferase class-I YPN_RS03835 PF06418 CTP synthase N-terminus YPN_RS03840 PF03952 Enolase, N-terminal domain YPN_RS03840 PF00113 Enolase, C-terminal TIM barrel domain YPN_RS03845 PF00080 Copper/zinc superoxide dismutase (SODC) YPN_RS03850 PF04055 Radical SAM superfamily YPN_RS03855 PF01242 6-pyruvoyl tetrahydropterin synthase YPN_RS03860 PF00667 FAD binding domain YPN_RS03860 PF00175 Oxidoreductase NAD-binding domain YPN_RS03860 PF00258 Flavodoxin YPN_RS03865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPN_RS03865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPN_RS03890 PF14824 Sirohaem biosynthesis protein central YPN_RS03890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPN_RS03890 PF10414 Sirohaem synthase dimerisation region YPN_RS03895 PF01507 Phosphoadenosine phosphosulfate reductase family YPN_RS03900 PF00009 Elongation factor Tu GTP binding domain YPN_RS03910 PF12084 Protein of unknown function (DUF3561) YPN_RS03915 PF04977 Septum formation initiator YPN_RS03920 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPN_RS03925 PF02542 YgbB family YPN_RS03930 PF01142 tRNA pseudouridine synthase D (TruD) YPN_RS03935 PF01975 Survival protein SurE YPN_RS03945 PF01551 Peptidase family M23 YPN_RS03945 PF01476 LysM domain YPN_RS03950 PF04545 Sigma-70, region 4 YPN_RS03950 PF04542 Sigma-70 region 2 YPN_RS03950 PF04539 Sigma-70 region 3 YPN_RS03950 PF00140 Sigma-70 factor, region 1.2 YPN_RS03955 PF05188 MutS domain II YPN_RS03955 PF05190 MutS family domain IV YPN_RS03955 PF05192 MutS domain III YPN_RS03955 PF01624 MutS domain I YPN_RS03955 PF00488 MutS domain V YPN_RS03965 PF02502 Ribose/Galactose Isomerase YPN_RS03970 PF00107 Zinc-binding dehydrogenase YPN_RS03970 PF08240 Alcohol dehydrogenase GroES-like domain YPN_RS03980 PF02733 Dak1 domain YPN_RS03985 PF02734 DAK2 domain YPN_RS03990 PF04198 Putative sugar-binding domain YPN_RS03990 PF13936 Helix-turn-helix domain YPN_RS03995 PF02040 Arsenical pump membrane protein YPN_RS04000 PF01022 Bacterial regulatory protein, arsR family YPN_RS04015 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS04020 PF14376 Haem-binding domain YPN_RS04020 PF00034 Cytochrome c YPN_RS04020 PF03150 Di-haem cytochrome c peroxidase YPN_RS04030 PF07715 TonB-dependent Receptor Plug Domain YPN_RS04030 PF00593 TonB dependent receptor YPN_RS04045 PF00557 Metallopeptidase family M24 YPN_RS04055 PF05681 Fumarate hydratase (Fumerase) YPN_RS04055 PF05683 Fumarase C-terminus YPN_RS04060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_RS04060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS04065 PF01261 Xylose isomerase-like TIM barrel YPN_RS04070 PF02653 Branched-chain amino acid transport system / permease component YPN_RS04075 PF02653 Branched-chain amino acid transport system / permease component YPN_RS04080 PF00005 ABC transporter YPN_RS04085 PF01797 Transposase IS200 like YPN_RS04095 PF00455 DeoR C terminal sensor domain YPN_RS04095 PF08220 DeoR-like helix-turn-helix domain YPN_RS04100 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_RS04105 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_RS04105 PF01568 Molydopterin dinucleotide binding domain YPN_RS04105 PF00384 Molybdopterin oxidoreductase YPN_RS04110 PF13247 4Fe-4S dicluster domain YPN_RS04110 PF12800 4Fe-4S binding domain YPN_RS04115 PF04976 DMSO reductase anchor subunit (DmsC) YPN_RS04120 PF02613 Nitrate reductase delta subunit YPN_RS04125 PF01292 Prokaryotic cytochrome b561 YPN_RS04130 PF07361 Cytochrome b562 YPN_RS04135 PF00141 Peroxidase YPN_RS04140 PF13407 Periplasmic binding protein domain YPN_RS04150 PF00005 ABC transporter YPN_RS04155 PF02653 Branched-chain amino acid transport system / permease component YPN_RS04160 PF00456 Transketolase, thiamine diphosphate binding domain YPN_RS04165 PF02780 Transketolase, C-terminal domain YPN_RS04165 PF02779 Transketolase, pyrimidine binding domain YPN_RS04170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_RS04170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS04185 PF07690 Major Facilitator Superfamily YPN_RS04190 PF02464 Competence-damaged protein YPN_RS04195 PF00154 recA bacterial DNA recombination protein YPN_RS04200 PF02631 RecX family YPN_RS04205 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPN_RS04205 PF02272 DHHA1 domain YPN_RS04205 PF01411 tRNA synthetases class II (A) YPN_RS04210 PF02599 Global regulator protein family YPN_RS04235 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS04240 PF09335 SNARE associated Golgi protein YPN_RS04245 PF04262 Glutamate-cysteine ligase YPN_RS04250 PF02664 S-Ribosylhomocysteinase (LuxS) YPN_RS04255 PF00665 Integrase core domain YPN_RS04255 PF02796 Helix-turn-helix domain of resolvase YPN_RS04260 PF01695 IstB-like ATP binding protein YPN_RS04270 PF00571 CBS domain YPN_RS04270 PF03471 Transporter associated domain YPN_RS04270 PF01595 Cyclin M transmembrane N-terminal domain YPN_RS04275 PF01578 Cytochrome C assembly protein YPN_RS04280 PF00448 SRP54-type protein, GTPase domain YPN_RS04280 PF02881 SRP54-type protein, helical bundle domain YPN_RS04280 PF02978 Signal peptide binding domain YPN_RS04285 PF00886 Ribosomal protein S16 YPN_RS04290 PF01782 RimM N-terminal domain YPN_RS04290 PF05239 PRC-barrel domain YPN_RS04295 PF01746 tRNA (Guanine-1)-methyltransferase YPN_RS04300 PF01245 Ribosomal protein L19 YPN_RS04310 PF01797 Transposase IS200 like YPN_RS04315 PF04338 Protein of unknown function, DUF481 YPN_RS04320 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPN_RS04325 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPN_RS04330 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPN_RS04335 PF00072 Response regulator receiver domain YPN_RS04335 PF04397 LytTr DNA-binding domain YPN_RS04340 PF00793 DAHP synthetase I family YPN_RS04345 PF01817 Chorismate mutase type II YPN_RS04345 PF02153 Prephenate dehydrogenase YPN_RS04350 PF01817 Chorismate mutase type II YPN_RS04350 PF00800 Prephenate dehydratase YPN_RS04360 PF01797 Transposase IS200 like YPN_RS04365 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPN_RS04370 PF13525 Outer membrane lipoprotein YPN_RS04375 PF00849 RNA pseudouridylate synthase YPN_RS04375 PF01479 S4 domain YPN_RS04380 PF02578 Multi-copper polyphenol oxidoreductase laccase YPN_RS04385 PF02861 Clp amino terminal domain, pathogenicity island component YPN_RS04385 PF17871 AAA lid domain YPN_RS04385 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS04385 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS04385 PF07724 AAA domain (Cdc48 subfamily) YPN_RS04420 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPN_RS04425 PF13091 PLD-like domain YPN_RS04430 PF00583 Acetyltransferase (GNAT) family YPN_RS04430 PF13380 CoA binding domain YPN_RS04430 PF13607 Succinyl-CoA ligase like flavodoxin domain YPN_RS04435 PF03942 DTW domain YPN_RS04440 PF00085 Thioredoxin YPN_RS04445 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPN_RS04445 PF00588 SpoU rRNA Methylase family YPN_RS04450 PF07690 Major Facilitator Superfamily YPN_RS04455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS04455 PF00529 HlyD membrane-fusion protein of T1SS YPN_RS04460 PF01047 MarR family YPN_RS04465 PF05437 Branched-chain amino acid transport protein (AzlD) YPN_RS04470 PF03591 AzlC protein YPN_RS04475 PF07690 Major Facilitator Superfamily YPN_RS04485 PF01425 Amidase YPN_RS04505 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS04510 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS04515 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS04520 PF00005 ABC transporter YPN_RS04525 PF00266 Aminotransferase class-V YPN_RS04530 PF01546 Peptidase family M20/M25/M40 YPN_RS04530 PF07687 Peptidase dimerisation domain YPN_RS04535 PF08479 POTRA domain, ShlB-type YPN_RS04535 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_RS04540 PF05860 haemagglutination activity domain YPN_RS04550 PF18254 HMW1 domain 2 YPN_RS04550 PF18071 HMW1C N-terminal YPN_RS04560 PF09317 Domain of unknown function (DUF1974) YPN_RS04560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPN_RS04560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPN_RS04565 PF13580 SIS domain YPN_RS04570 PF13230 Glutamine amidotransferases class-II YPN_RS04575 PF03734 L,D-transpeptidase catalytic domain YPN_RS04580 PF11973 NQRA C-terminal domain YPN_RS04580 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPN_RS04585 PF03116 NQR2, RnfD, RnfE family YPN_RS04590 PF04205 FMN-binding domain YPN_RS04595 PF02508 Rnf-Nqr subunit, membrane protein YPN_RS04600 PF02508 Rnf-Nqr subunit, membrane protein YPN_RS04605 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_RS04605 PF00970 Oxidoreductase FAD-binding domain YPN_RS04605 PF00175 Oxidoreductase NAD-binding domain YPN_RS04610 PF02424 ApbE family YPN_RS04620 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_RS04625 PF11798 IMS family HHH motif YPN_RS04625 PF11799 impB/mucB/samB family C-terminal domain YPN_RS04625 PF00817 impB/mucB/samB family YPN_RS04630 PF07687 Peptidase dimerisation domain YPN_RS04630 PF01546 Peptidase family M20/M25/M40 YPN_RS04655 PF00156 Phosphoribosyl transferase domain YPN_RS04660 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) YPN_RS04665 PF07417 Sigma factor-binding transcriptional regulator Crl YPN_RS04670 PF01472 PUA domain YPN_RS04670 PF00696 Amino acid kinase family YPN_RS04675 PF00171 Aldehyde dehydrogenase family YPN_RS04680 PF07317 Flagellar regulator YcgR YPN_RS04680 PF07238 PilZ domain YPN_RS04690 PF08241 Methyltransferase domain YPN_RS04705 PF01202 Shikimate kinase YPN_RS04715 PF06865 Pyrimidine/purine nucleoside phosphorylase YPN_RS04720 PF04381 Putative exonuclease, RdgC YPN_RS04725 PF00480 ROK family YPN_RS04730 PF13476 AAA domain YPN_RS04735 PF12320 Type 5 capsule protein repressor C-terminal domain YPN_RS04735 PF00149 Calcineurin-like phosphoesterase YPN_RS04745 PF00486 Transcriptional regulatory protein, C terminal YPN_RS04745 PF00072 Response regulator receiver domain YPN_RS04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS04750 PF00989 PAS fold YPN_RS04750 PF11808 Phosphate regulon sensor protein PhoR YPN_RS04750 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS04755 PF12849 PBP superfamily domain YPN_RS04760 PF05525 Branched-chain amino acid transport protein YPN_RS04765 PF00324 Amino acid permease YPN_RS04770 PF00128 Alpha amylase, catalytic domain YPN_RS04770 PF02903 Alpha amylase, N-terminal ig-like domain YPN_RS04795 PF00578 AhpC/TSA family YPN_RS04795 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPN_RS04800 PF04336 Acyl carrier protein phosphodiesterase YPN_RS04805 PF02547 Queuosine biosynthesis protein YPN_RS04810 PF01702 Queuine tRNA-ribosyltransferase YPN_RS04815 PF02699 Preprotein translocase subunit YPN_RS04820 PF07549 SecD/SecF GG Motif YPN_RS04820 PF13721 SecD export protein N-terminal TM region YPN_RS04820 PF02355 Protein export membrane protein YPN_RS04825 PF07549 SecD/SecF GG Motif YPN_RS04825 PF02355 Protein export membrane protein YPN_RS04840 PF01797 Transposase IS200 like YPN_RS04855 PF03477 ATP cone domain YPN_RS04860 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPN_RS04860 PF01872 RibD C-terminal domain YPN_RS04865 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPN_RS04870 PF01029 NusB family YPN_RS04875 PF02769 AIR synthase related protein, C-terminal domain YPN_RS04875 PF00586 AIR synthase related protein, N-terminal domain YPN_RS04880 PF04608 Phosphatidylglycerophosphatase A YPN_RS04895 PF02779 Transketolase, pyrimidine binding domain YPN_RS04895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPN_RS04895 PF02780 Transketolase, C-terminal domain YPN_RS04900 PF00348 Polyprenyl synthetase YPN_RS04905 PF02609 Exonuclease VII small subunit YPN_RS04915 PF02926 THUMP domain YPN_RS04915 PF02568 Thiamine biosynthesis protein (ThiI) YPN_RS04920 PF01965 DJ-1/PfpI family YPN_RS04925 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPN_RS04925 PF02558 Ketopantoate reductase PanE/ApbA YPN_RS04930 PF04461 Protein of unknown function (DUF520) YPN_RS04935 PF01695 IstB-like ATP binding protein YPN_RS04940 PF02796 Helix-turn-helix domain of resolvase YPN_RS04940 PF00665 Integrase core domain YPN_RS04945 PF04461 Protein of unknown function (DUF520) YPN_RS04950 PF07690 Major Facilitator Superfamily YPN_RS04955 PF01040 UbiA prenyltransferase family YPN_RS04960 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPN_RS04965 PF00510 Cytochrome c oxidase subunit III YPN_RS04970 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPN_RS04975 PF06481 COX Aromatic Rich Motif YPN_RS04975 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPN_RS04980 PF03502 Nucleoside-specific channel-forming protein, Tsx YPN_RS04985 PF07690 Major Facilitator Superfamily YPN_RS04990 PF03923 Uncharacterized lipoprotein YPN_RS04990 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPN_RS04995 PF01722 BolA-like protein YPN_RS05005 PF05698 Bacterial trigger factor protein (TF) C-terminus YPN_RS05005 PF05697 Bacterial trigger factor protein (TF) YPN_RS05005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_RS05010 PF00574 Clp protease YPN_RS05015 PF07724 AAA domain (Cdc48 subfamily) YPN_RS05015 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS05015 PF06689 ClpX C4-type zinc finger YPN_RS05020 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPN_RS05020 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS05020 PF05362 Lon protease (S16) C-terminal proteolytic domain YPN_RS05025 PF00216 Bacterial DNA-binding protein YPN_RS05030 PF13145 PPIC-type PPIASE domain YPN_RS05045 PF06508 Queuosine biosynthesis protein QueC YPN_RS05050 PF12793 Sugar transport-related sRNA regulator N-term YPN_RS05050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_RS05060 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS05065 PF01037 Lrp/AsnC ligand binding domain YPN_RS05065 PF13404 AsnC-type helix-turn-helix domain YPN_RS05070 PF00664 ABC transporter transmembrane region YPN_RS05070 PF00005 ABC transporter YPN_RS05075 PF00005 ABC transporter YPN_RS05075 PF00664 ABC transporter transmembrane region YPN_RS05080 PF00543 Nitrogen regulatory protein P-II YPN_RS05085 PF00909 Ammonium Transporter Family YPN_RS05095 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPN_RS05100 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPN_RS05105 PF05321 Haemolysin expression modulating protein YPN_RS05110 PF10757 Biofilm formation regulator YbaJ YPN_RS05120 PF00444 Ribosomal protein L36 YPN_RS05125 PF01197 Ribosomal protein L31 YPN_RS05130 PF00873 AcrB/AcrD/AcrF family YPN_RS05135 PF00529 HlyD membrane-fusion protein of T1SS YPN_RS05135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS05140 PF00440 Bacterial regulatory proteins, tetR family YPN_RS05140 PF08361 MAATS-type transcriptional repressor, C-terminal region YPN_RS05145 PF02635 DsrE/DsrF-like family YPN_RS05150 PF00924 Mechanosensitive ion channel YPN_RS05150 PF12795 Mechanosensitive ion channel porin domain YPN_RS05150 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPN_RS05155 PF10689 Protein of unknown function (DUF2496) YPN_RS05170 PF00156 Phosphoribosyl transferase domain YPN_RS05175 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPN_RS05175 PF12170 DNA polymerase III tau subunit V interacting with alpha YPN_RS05175 PF12169 DNA polymerase III subunits gamma and tau domain III YPN_RS05180 PF02575 YbaB/EbfC DNA-binding family YPN_RS05185 PF02132 RecR protein YPN_RS05185 PF13662 Toprim domain YPN_RS05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS05190 PF00183 Hsp90 protein YPN_RS05195 PF05191 Adenylate kinase, active site lid YPN_RS05200 PF00762 Ferrochelatase YPN_RS05205 PF00175 Oxidoreductase NAD-binding domain YPN_RS05205 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_RS05205 PF00970 Oxidoreductase FAD-binding domain YPN_RS05210 PF00483 Nucleotidyl transferase YPN_RS05215 PF16363 GDP-mannose 4,6 dehydratase YPN_RS05220 PF16363 GDP-mannose 4,6 dehydratase YPN_RS05225 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPN_RS05230 PF01370 NAD dependent epimerase/dehydratase family YPN_RS05260 PF13439 Glycosyltransferase Family 4 YPN_RS05260 PF00534 Glycosyl transferases group 1 YPN_RS05270 PF01370 NAD dependent epimerase/dehydratase family YPN_RS05275 PF01050 Mannose-6-phosphate isomerase YPN_RS05275 PF00483 Nucleotidyl transferase YPN_RS05280 PF00535 Glycosyl transferase family 2 YPN_RS05285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPN_RS05285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPN_RS05285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPN_RS05285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPN_RS05295 PF02706 Chain length determinant protein YPN_RS05300 PF00294 pfkB family carbohydrate kinase YPN_RS05305 PF00999 Sodium/hydrogen exchanger family YPN_RS05305 PF02254 TrkA-N domain YPN_RS05310 PF07690 Major Facilitator Superfamily YPN_RS05315 PF00149 Calcineurin-like phosphoesterase YPN_RS05315 PF02872 5'-nucleotidase, C-terminal domain YPN_RS05320 PF00149 Calcineurin-like phosphoesterase YPN_RS05320 PF02872 5'-nucleotidase, C-terminal domain YPN_RS05325 PF02872 5'-nucleotidase, C-terminal domain YPN_RS05325 PF00149 Calcineurin-like phosphoesterase YPN_RS05340 PF04073 Aminoacyl-tRNA editing domain YPN_RS05345 PF01963 TraB family YPN_RS05350 PF00403 Heavy-metal-associated domain YPN_RS05355 PF13411 MerR HTH family regulatory protein YPN_RS05360 PF01957 NfeD-like C-terminal, partner-binding YPN_RS05365 PF01145 SPFH domain / Band 7 family YPN_RS05365 PF16200 C-terminal region of band_7 YPN_RS05370 PF00085 Thioredoxin YPN_RS05375 PF00106 short chain dehydrogenase YPN_RS05380 PF13472 GDSL-like Lipase/Acylhydrolase family YPN_RS05385 PF00005 ABC transporter YPN_RS05395 PF01797 Transposase IS200 like YPN_RS05400 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPN_RS05400 PF02222 ATP-grasp domain YPN_RS05405 PF00731 AIR carboxylase YPN_RS05410 PF00149 Calcineurin-like phosphoesterase YPN_RS05415 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPN_RS05420 PF01406 tRNA synthetases class I (C) catalytic domain YPN_RS05420 PF09190 DALR domain YPN_RS05430 PF01797 Transposase IS200 like YPN_RS05440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPN_RS05440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPN_RS05485 PF01066 CDP-alcohol phosphatidyltransferase YPN_RS05495 PF01553 Acyltransferase YPN_RS05500 PF12147 Putative methyltransferase YPN_RS05500 PF12146 Serine aminopeptidase, S33 YPN_RS05505 PF00782 Dual specificity phosphatase, catalytic domain YPN_RS05520 PF01695 IstB-like ATP binding protein YPN_RS05525 PF00665 Integrase core domain YPN_RS05525 PF02796 Helix-turn-helix domain of resolvase YPN_RS05530 PF03466 LysR substrate binding domain YPN_RS05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS05535 PF00248 Aldo/keto reductase family YPN_RS05540 PF00248 Aldo/keto reductase family YPN_RS05560 PF14310 Fibronectin type III-like domain YPN_RS05560 PF00933 Glycosyl hydrolase family 3 N terminal domain YPN_RS05560 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPN_RS05575 PF00872 Transposase, Mutator family YPN_RS05580 PF08007 Cupin superfamily protein YPN_RS05590 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPN_RS05590 PF03797 Autotransporter beta-domain YPN_RS05590 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS05590 PF03212 Pertactin YPN_RS05605 PF05638 Type VI secretion system effector, Hcp YPN_RS05630 PF13693 Winged helix-turn-helix DNA-binding YPN_RS05635 PF00905 Penicillin binding protein transpeptidase domain YPN_RS05635 PF06832 Penicillin-Binding Protein C-terminus Family YPN_RS05635 PF00912 Transglycosylase YPN_RS05645 PF01797 Transposase IS200 like YPN_RS05650 PF07703 Alpha-2-macroglobulin bait region domain YPN_RS05650 PF00207 Alpha-2-macroglobulin family YPN_RS05650 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPN_RS05650 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPN_RS05650 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPN_RS05650 PF17962 Bacterial macroglobulin domain 6 YPN_RS05650 PF01835 MG2 domain YPN_RS05665 PF00171 Aldehyde dehydrogenase family YPN_RS05670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_RS05670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_RS05670 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_RS05680 PF13407 Periplasmic binding protein domain YPN_RS05685 PF00005 ABC transporter YPN_RS05690 PF02653 Branched-chain amino acid transport system / permease component YPN_RS05695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_RS05695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_RS05700 PF00294 pfkB family carbohydrate kinase YPN_RS05705 PF01261 Xylose isomerase-like TIM barrel YPN_RS05710 PF04962 KduI/IolB family YPN_RS05720 PF00005 ABC transporter YPN_RS05720 PF00664 ABC transporter transmembrane region YPN_RS05745 PF00196 Bacterial regulatory proteins, luxR family YPN_RS05750 PF00313 'Cold-shock' DNA-binding domain YPN_RS05755 PF00313 'Cold-shock' DNA-binding domain YPN_RS05760 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPN_RS05770 PF02416 mttA/Hcf106 family YPN_RS05775 PF04055 Radical SAM superfamily YPN_RS05775 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPN_RS05780 PF03099 Biotin/lipoate A/B protein ligase family YPN_RS05785 PF04359 Protein of unknown function (DUF493) YPN_RS05790 PF00768 D-alanyl-D-alanine carboxypeptidase YPN_RS05790 PF07943 Penicillin-binding protein 5, C-terminal domain YPN_RS05795 PF05036 Sporulation related domain YPN_RS05795 PF03330 Lytic transglycolase YPN_RS05800 PF01098 Cell cycle protein YPN_RS05805 PF00905 Penicillin binding protein transpeptidase domain YPN_RS05805 PF03717 Penicillin-binding Protein dimerisation domain YPN_RS05810 PF02590 Predicted SPOUT methyltransferase YPN_RS05820 PF01467 Cytidylyltransferase-like YPN_RS05825 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPN_RS05825 PF06144 DNA polymerase III, delta subunit YPN_RS05830 PF04390 Lipopolysaccharide-assembly YPN_RS05835 PF13603 Leucyl-tRNA synthetase, Domain 2 YPN_RS05835 PF00133 tRNA synthetases class I (I, L, M and V) YPN_RS05835 PF08264 Anticodon-binding domain of tRNA YPN_RS05840 PF07295 Zinc-ribbon containing domain YPN_RS05845 PF00005 ABC transporter YPN_RS05850 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS05855 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS05860 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS05865 PF00795 Carbon-nitrogen hydrolase YPN_RS05870 PF03471 Transporter associated domain YPN_RS05870 PF00571 CBS domain YPN_RS05875 PF02130 Uncharacterized protein family UPF0054 YPN_RS05880 PF02562 PhoH-like protein YPN_RS05885 PF00919 Uncharacterized protein family UPF0004 YPN_RS05885 PF04055 Radical SAM superfamily YPN_RS05885 PF01938 TRAM domain YPN_RS05890 PF01494 FAD binding domain YPN_RS05930 PF13537 Glutamine amidotransferase domain YPN_RS05930 PF00733 Asparagine synthase YPN_RS05935 PF13344 Haloacid dehalogenase-like hydrolase YPN_RS05940 PF01047 MarR family YPN_RS05940 PF00480 ROK family YPN_RS05945 PF01979 Amidohydrolase family YPN_RS05950 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPN_RS05955 PF00367 phosphotransferase system, EIIB YPN_RS05955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPN_RS05955 PF02378 Phosphotransferase system, EIIC YPN_RS05960 PF01797 Transposase IS200 like YPN_RS05965 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPN_RS05965 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPN_RS05970 PF03573 outer membrane porin, OprD family YPN_RS05980 PF01475 Ferric uptake regulator family YPN_RS05985 PF00258 Flavodoxin YPN_RS05990 PF01402 Ribbon-helix-helix protein, copG family YPN_RS06000 PF12697 Alpha/beta hydrolase family YPN_RS06010 PF13356 Arm DNA-binding domain YPN_RS06010 PF00589 Phage integrase family YPN_RS06015 PF01527 Transposase YPN_RS06020 PF13356 Arm DNA-binding domain YPN_RS06020 PF00589 Phage integrase family YPN_RS06025 PF01695 IstB-like ATP binding protein YPN_RS06030 PF01695 IstB-like ATP binding protein YPN_RS06035 PF00665 Integrase core domain YPN_RS06035 PF02796 Helix-turn-helix domain of resolvase YPN_RS06045 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPN_RS06050 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS06055 PF00005 ABC transporter YPN_RS06055 PF00571 CBS domain YPN_RS06060 PF00268 Ribonucleotide reductase, small chain YPN_RS06065 PF00317 Ribonucleotide reductase, all-alpha domain YPN_RS06065 PF02867 Ribonucleotide reductase, barrel domain YPN_RS06065 PF08343 Ribonucleotide reductase N-terminal YPN_RS06070 PF07972 NrdI Flavodoxin like YPN_RS06080 PF06392 Acid shock protein repeat YPN_RS06085 PF09400 Protein of unknown function (DUF2002) YPN_RS06090 PF06711 Protein of unknown function (DUF1198) YPN_RS06100 PF00313 'Cold-shock' DNA-binding domain YPN_RS06105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_RS06110 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS06115 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS06115 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_RS06120 PF00005 ABC transporter YPN_RS06125 PF00005 ABC transporter YPN_RS06130 PF00547 Urease, gamma subunit YPN_RS06135 PF00699 Urease beta subunit YPN_RS06140 PF00449 Urease alpha-subunit, N-terminal domain YPN_RS06140 PF01979 Amidohydrolase family YPN_RS06145 PF02814 UreE urease accessory protein, N-terminal domain YPN_RS06145 PF05194 UreE urease accessory protein, C-terminal domain YPN_RS06150 PF01730 UreF YPN_RS06155 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPN_RS06160 PF01774 UreD urease accessory protein YPN_RS06165 PF03253 Urea transporter YPN_RS06170 PF03824 High-affinity nickel-transport protein YPN_RS06175 PF06411 HdeA/HdeB family YPN_RS06185 PF07885 Ion channel YPN_RS06185 PF02254 TrkA-N domain YPN_RS06190 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPN_RS06195 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPN_RS06205 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_RS06210 PF02378 Phosphotransferase system, EIIC YPN_RS06215 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPN_RS06220 PF07883 Cupin domain YPN_RS06220 PF12833 Helix-turn-helix domain YPN_RS06225 PF04794 YdjC-like protein YPN_RS06240 PF03925 SeqA protein C-terminal domain YPN_RS06240 PF17206 SeqA protein N-terminal domain YPN_RS06245 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPN_RS06245 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPN_RS06245 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPN_RS06245 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPN_RS06265 PF00486 Transcriptional regulatory protein, C terminal YPN_RS06265 PF00072 Response regulator receiver domain YPN_RS06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS06270 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS06270 PF13492 GAF domain YPN_RS06270 PF13493 Domain of unknown function (DUF4118) YPN_RS06270 PF02702 Osmosensitive K+ channel His kinase sensor domain YPN_RS06275 PF02669 K+-transporting ATPase, c chain YPN_RS06285 PF03814 Potassium-transporting ATPase A subunit YPN_RS06300 PF10725 Protein of unknown function (DUF2517) YPN_RS06305 PF08349 Protein of unknown function (DUF1722) YPN_RS06310 PF03441 FAD binding domain of DNA photolyase YPN_RS06310 PF00875 DNA photolyase YPN_RS06315 PF02112 cAMP phosphodiesterases class-II YPN_RS06320 PF01784 NIF3 (NGG1p interacting factor 3) YPN_RS06330 PF02626 Carboxyltransferase domain, subdomain A and B YPN_RS06335 PF03746 LamB/YcsF family YPN_RS06350 PF01470 Pyroglutamyl peptidase YPN_RS06355 PF03167 Uracil DNA glycosylase superfamily YPN_RS06360 PF01228 Glycine radical YPN_RS06375 PF12796 Ankyrin repeats (3 copies) YPN_RS06380 PF00271 Helicase conserved C-terminal domain YPN_RS06380 PF00270 DEAD/DEAH box helicase YPN_RS06385 PF05175 Methyltransferase small domain YPN_RS06390 PF00890 FAD binding domain YPN_RS06390 PF02910 Fumarate reductase flavoprotein C-term YPN_RS06395 PF08281 Sigma-70, region 4 YPN_RS06395 PF04542 Sigma-70 region 2 YPN_RS06400 PF03873 Anti sigma-E protein RseA, C-terminal domain YPN_RS06400 PF03872 Anti sigma-E protein RseA, N-terminal domain YPN_RS06405 PF03888 MucB/RseB N-terminal domain YPN_RS06405 PF17188 MucB/RseB C-terminal domain YPN_RS06420 PF00679 Elongation factor G C-terminus YPN_RS06420 PF00009 Elongation factor Tu GTP binding domain YPN_RS06420 PF03144 Elongation factor Tu domain 2 YPN_RS06420 PF06421 GTP-binding protein LepA C-terminus YPN_RS06425 PF10502 Signal peptidase, peptidase S26 YPN_RS06430 PF14622 Ribonuclease-III-like YPN_RS06430 PF00035 Double-stranded RNA binding motif YPN_RS06435 PF01926 50S ribosome-binding GTPase YPN_RS06435 PF07650 KH domain YPN_RS06440 PF02565 Recombination protein O C terminal YPN_RS06440 PF11967 Recombination protein O N terminal YPN_RS06445 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPN_RS06450 PF01648 4'-phosphopantetheinyl transferase superfamily YPN_RS06460 PF01797 Transposase IS200 like YPN_RS06465 PF12838 4Fe-4S dicluster domain YPN_RS06470 PF01380 SIS domain YPN_RS06470 PF01418 Helix-turn-helix domain, rpiR family YPN_RS06475 PF01380 SIS domain YPN_RS06485 PF14437 MafB19-like deaminase YPN_RS06490 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS06490 PF01464 Transglycosylase SLT domain YPN_RS06495 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPN_RS06495 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPN_RS06495 PF02769 AIR synthase related protein, C-terminal domain YPN_RS06520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS06520 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS06525 PF13942 YfhG lipoprotein YPN_RS06530 PF00158 Sigma-54 interaction domain YPN_RS06530 PF00072 Response regulator receiver domain YPN_RS06535 PF00795 Carbon-nitrogen hydrolase YPN_RS06535 PF02540 NAD synthase YPN_RS06540 PF00543 Nitrogen regulatory protein P-II YPN_RS06545 PF14503 YhfZ C-terminal domain YPN_RS06545 PF14502 Helix-turn-helix domain YPN_RS06550 PF01695 IstB-like ATP binding protein YPN_RS06555 PF02796 Helix-turn-helix domain of resolvase YPN_RS06555 PF00665 Integrase core domain YPN_RS06560 PF14503 YhfZ C-terminal domain YPN_RS06560 PF14502 Helix-turn-helix domain YPN_RS06565 PF00970 Oxidoreductase FAD-binding domain YPN_RS06565 PF00175 Oxidoreductase NAD-binding domain YPN_RS06565 PF00042 Globin YPN_RS06570 PF00464 Serine hydroxymethyltransferase YPN_RS06580 PF13505 Outer membrane protein beta-barrel domain YPN_RS06585 PF12832 MFS_1 like family YPN_RS06590 PF00874 PRD domain YPN_RS06595 PF06226 Protein of unknown function (DUF1007) YPN_RS06600 PF03824 High-affinity nickel-transport protein YPN_RS06605 PF00459 Inositol monophosphatase family YPN_RS06610 PF00588 SpoU rRNA Methylase family YPN_RS06615 PF02082 Transcriptional regulator YPN_RS06620 PF00266 Aminotransferase class-V YPN_RS06625 PF01592 NifU-like N terminal domain YPN_RS06630 PF01521 Iron-sulphur cluster biosynthesis YPN_RS06635 PF00226 DnaJ domain YPN_RS06635 PF07743 HSCB C-terminal oligomerisation domain YPN_RS06640 PF00012 Hsp70 protein YPN_RS06645 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_RS06650 PF04384 Iron-sulphur cluster assembly YPN_RS06655 PF12404 Peptidase YPN_RS06655 PF00883 Cytosol aminopeptidase family, catalytic domain YPN_RS06660 PF07179 SseB protein N-terminal domain YPN_RS06660 PF14581 SseB protein C-terminal domain YPN_RS06670 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPN_RS06670 PF03212 Pertactin YPN_RS06670 PF03797 Autotransporter beta-domain YPN_RS06675 PF03212 Pertactin YPN_RS06675 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPN_RS06675 PF03797 Autotransporter beta-domain YPN_RS06690 PF00334 Nucleoside diphosphate kinase YPN_RS06695 PF04055 Radical SAM superfamily YPN_RS06705 PF13464 Domain of unknown function (DUF4115) YPN_RS06710 PF04551 GcpE protein YPN_RS06715 PF13393 Histidyl-tRNA synthetase YPN_RS06715 PF03129 Anticodon binding domain YPN_RS06720 PF09976 Tetratricopeptide repeat-like domain YPN_RS06725 PF13360 PQQ-like domain YPN_RS06730 PF01926 50S ribosome-binding GTPase YPN_RS06730 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPN_RS06740 PF07191 zinc-ribbons YPN_RS06745 PF13742 OB-fold nucleic acid binding domain YPN_RS06745 PF02601 Exonuclease VII, large subunit YPN_RS06750 PF00478 IMP dehydrogenase / GMP reductase domain YPN_RS06750 PF00571 CBS domain YPN_RS06760 PF02540 NAD synthase YPN_RS06760 PF00958 GMP synthase C terminal domain YPN_RS06760 PF00117 Glutamine amidotransferase class-I YPN_RS06770 PF01797 Transposase IS200 like YPN_RS06775 PF05638 Type VI secretion system effector, Hcp YPN_RS06805 PF00872 Transposase, Mutator family YPN_RS06820 PF08543 Phosphomethylpyrimidine kinase YPN_RS06835 PF00781 Diacylglycerol kinase catalytic domain YPN_RS06840 PF01136 Peptidase family U32 YPN_RS06840 PF16325 Peptidase family U32 C-terminal domain YPN_RS06845 PF07411 Domain of unknown function (DUF1508) YPN_RS06850 PF00072 Response regulator receiver domain YPN_RS06850 PF00486 Transcriptional regulatory protein, C terminal YPN_RS06855 PF00672 HAMP domain YPN_RS06855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS06855 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS06860 PF00672 HAMP domain YPN_RS06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS06860 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS06865 PF07690 Major Facilitator Superfamily YPN_RS06870 PF00873 AcrB/AcrD/AcrF family YPN_RS06875 PF00873 AcrB/AcrD/AcrF family YPN_RS06880 PF13533 Biotin-lipoyl like YPN_RS06885 PF08402 TOBE domain YPN_RS06885 PF00005 ABC transporter YPN_RS06890 PF00392 Bacterial regulatory proteins, gntR family YPN_RS06890 PF00155 Aminotransferase class I and II YPN_RS06895 PF00202 Aminotransferase class-III YPN_RS06905 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS06910 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS06915 PF00012 Hsp70 protein YPN_RS06920 PF00571 CBS domain YPN_RS06920 PF01769 Divalent cation transporter YPN_RS06920 PF03448 MgtE intracellular N domain YPN_RS06930 PF02541 Ppx/GppA phosphatase family YPN_RS06935 PF17941 Polyphosphate kinase C-terminal domain 1 YPN_RS06935 PF02503 Polyphosphate kinase middle domain YPN_RS06935 PF13090 Polyphosphate kinase C-terminal domain 2 YPN_RS06935 PF13089 Polyphosphate kinase N-terminal domain YPN_RS06945 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS06950 PF00005 ABC transporter YPN_RS06965 PF13302 Acetyltransferase (GNAT) domain YPN_RS06970 PF00551 Formyl transferase YPN_RS06975 PF02769 AIR synthase related protein, C-terminal domain YPN_RS06975 PF00586 AIR synthase related protein, N-terminal domain YPN_RS06985 PF01797 Transposase IS200 like YPN_RS06990 PF00308 Bacterial dnaA protein YPN_RS06995 PF03960 ArsC family YPN_RS07000 PF07720 Tetratricopeptide repeat YPN_RS07000 PF01435 Peptidase family M48 YPN_RS07005 PF01594 AI-2E family transporter YPN_RS07025 PF00578 AhpC/TSA family YPN_RS07030 PF01842 ACT domain YPN_RS07035 PF00701 Dihydrodipicolinate synthetase family YPN_RS07040 PF06804 NlpB/DapX lipoprotein YPN_RS07050 PF01797 Transposase IS200 like YPN_RS07055 PF01259 SAICAR synthetase YPN_RS07060 PF04228 Putative neutral zinc metallopeptidase YPN_RS07065 PF04284 Protein of unknown function (DUF441) YPN_RS07070 PF13718 GNAT acetyltransferase 2 YPN_RS07070 PF08351 Domain of unknown function (DUF1726) YPN_RS07070 PF17176 tRNA-binding domain YPN_RS07070 PF05127 Helicase YPN_RS07075 PF13980 Uncharacterised protein family (UPF0370) YPN_RS07080 PF02557 D-alanyl-D-alanine carboxypeptidase YPN_RS07085 PF07687 Peptidase dimerisation domain YPN_RS07085 PF01546 Peptidase family M20/M25/M40 YPN_RS07090 PF03960 ArsC family YPN_RS07105 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS07110 PF00005 ABC transporter YPN_RS07110 PF08402 TOBE domain YPN_RS07115 PF00884 Sulfatase YPN_RS07120 PF04055 Radical SAM superfamily YPN_RS07120 PF13186 Iron-sulfur cluster-binding domain YPN_RS07125 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPN_RS07135 PF00873 AcrB/AcrD/AcrF family YPN_RS07145 PF00196 Bacterial regulatory proteins, luxR family YPN_RS07145 PF00072 Response regulator receiver domain YPN_RS07150 PF13187 4Fe-4S dicluster domain YPN_RS07150 PF12800 4Fe-4S binding domain YPN_RS07150 PF00037 4Fe-4S binding domain YPN_RS07155 PF03927 NapD protein YPN_RS07160 PF01568 Molydopterin dinucleotide binding domain YPN_RS07160 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPN_RS07160 PF00384 Molybdopterin oxidoreductase YPN_RS07160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_RS07165 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPN_RS07170 PF03264 NapC/NirT cytochrome c family, N-terminal region YPN_RS07175 PF00293 NUDIX domain YPN_RS07180 PF03949 Malic enzyme, NAD binding domain YPN_RS07180 PF01515 Phosphate acetyl/butaryl transferase YPN_RS07180 PF00390 Malic enzyme, N-terminal domain YPN_RS07185 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPN_RS07190 PF01218 Coproporphyrinogen III oxidase YPN_RS07195 PF00583 Acetyltransferase (GNAT) family YPN_RS07210 PF03797 Autotransporter beta-domain YPN_RS07210 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS07210 PF03212 Pertactin YPN_RS07210 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPN_RS07215 PF04076 Bacterial OB fold (BOF) protein YPN_RS07220 PF06572 Protein of unknown function (DUF1131) YPN_RS07225 PF04261 Dyp-type peroxidase family YPN_RS07230 PF00701 Dihydrodipicolinate synthetase family YPN_RS07235 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPN_RS07240 PF12468 Type III secretion system leucine rich repeat protein YPN_RS07245 PF00480 ROK family YPN_RS07250 PF04074 YhcH/YjgK/YiaL YPN_RS07260 PF01418 Helix-turn-helix domain, rpiR family YPN_RS07260 PF01380 SIS domain YPN_RS07265 PF07690 Major Facilitator Superfamily YPN_RS07275 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS07280 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS07285 PF00005 ABC transporter YPN_RS07290 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS07300 PF00486 Transcriptional regulatory protein, C terminal YPN_RS07300 PF00072 Response regulator receiver domain YPN_RS07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS07305 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS07305 PF00672 HAMP domain YPN_RS07315 PF00155 Aminotransferase class I and II YPN_RS07325 PF00557 Metallopeptidase family M24 YPN_RS07335 PF00474 Sodium:solute symporter family YPN_RS07340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_RS07340 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS07345 PF12704 MacB-like periplasmic core domain YPN_RS07345 PF00005 ABC transporter YPN_RS07345 PF02687 FtsX-like permease family YPN_RS07350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS07355 PF00072 Response regulator receiver domain YPN_RS07355 PF00486 Transcriptional regulatory protein, C terminal YPN_RS07360 PF00672 HAMP domain YPN_RS07360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS07360 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS07360 PF16527 Two-component sensor protein CpxA, periplasmic domain YPN_RS07375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPN_RS07380 PF05524 PEP-utilising enzyme, N-terminal YPN_RS07380 PF00391 PEP-utilising enzyme, mobile domain YPN_RS07380 PF02896 PEP-utilising enzyme, TIM barrel domain YPN_RS07385 PF00381 PTS HPr component phosphorylation site YPN_RS07390 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS07400 PF04354 ZipA, C-terminal FtsZ-binding domain YPN_RS07405 PF00533 BRCA1 C Terminus (BRCT) domain YPN_RS07405 PF01653 NAD-dependent DNA ligase adenylation domain YPN_RS07405 PF03120 NAD-dependent DNA ligase OB-fold domain YPN_RS07405 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPN_RS07405 PF12826 Helix-hairpin-helix motif YPN_RS07410 PF12843 Putative quorum-sensing-regulated virulence factor YPN_RS07435 PF01797 Transposase IS200 like YPN_RS07440 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPN_RS07465 PF07662 Na+ dependent nucleoside transporter C-terminus YPN_RS07465 PF07670 Nucleoside recognition YPN_RS07465 PF01773 Na+ dependent nucleoside transporter N-terminus YPN_RS07470 PF01566 Natural resistance-associated macrophage protein YPN_RS07480 PF00248 Aldo/keto reductase family YPN_RS07485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS07485 PF03466 LysR substrate binding domain YPN_RS07495 PF02685 Glucokinase YPN_RS07500 PF07350 Protein of unknown function (DUF1479) YPN_RS07505 PF00155 Aminotransferase class I and II YPN_RS07510 PF01292 Prokaryotic cytochrome b561 YPN_RS07520 PF03783 Curli production assembly/transport component CsgG YPN_RS07530 PF05643 Putative bacterial lipoprotein (DUF799) YPN_RS07540 PF02613 Nitrate reductase delta subunit YPN_RS07545 PF04976 DMSO reductase anchor subunit (DmsC) YPN_RS07550 PF12800 4Fe-4S binding domain YPN_RS07550 PF13247 4Fe-4S dicluster domain YPN_RS07555 PF01568 Molydopterin dinucleotide binding domain YPN_RS07555 PF00384 Molybdopterin oxidoreductase YPN_RS07555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_RS07565 PF05638 Type VI secretion system effector, Hcp YPN_RS07575 PF00005 ABC transporter YPN_RS07580 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS07590 PF13406 Transglycosylase SLT domain YPN_RS07635 PF05947 Type VI secretion system, TssF YPN_RS07640 PF17871 AAA lid domain YPN_RS07640 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS07640 PF07724 AAA domain (Cdc48 subfamily) YPN_RS07640 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS07645 PF16970 Type-1 fimbrial protein, A YPN_RS07650 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS07650 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS07655 PF13954 PapC N-terminal domain YPN_RS07655 PF00577 Outer membrane usher protein YPN_RS07655 PF13953 PapC C-terminal domain YPN_RS07665 PF13954 PapC N-terminal domain YPN_RS07665 PF13953 PapC C-terminal domain YPN_RS07665 PF00577 Outer membrane usher protein YPN_RS07675 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPN_RS07680 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPN_RS07695 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPN_RS07705 PF02796 Helix-turn-helix domain of resolvase YPN_RS07705 PF00665 Integrase core domain YPN_RS07710 PF01695 IstB-like ATP binding protein YPN_RS07720 PF01979 Amidohydrolase family YPN_RS07725 PF00392 Bacterial regulatory proteins, gntR family YPN_RS07725 PF07702 UTRA domain YPN_RS07730 PF01979 Amidohydrolase family YPN_RS07735 PF05962 HutD YPN_RS07745 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPN_RS07745 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_RS07750 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPN_RS07750 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_RS07755 PF01370 NAD dependent epimerase/dehydratase family YPN_RS07800 PF00872 Transposase, Mutator family YPN_RS07825 PF08242 Methyltransferase domain YPN_RS07865 PF00672 HAMP domain YPN_RS07865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS07865 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS07870 PF00486 Transcriptional regulatory protein, C terminal YPN_RS07870 PF00072 Response regulator receiver domain YPN_RS07875 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPN_RS07920 PF06071 Protein of unknown function (DUF933) YPN_RS07920 PF01926 50S ribosome-binding GTPase YPN_RS07925 PF01195 Peptidyl-tRNA hydrolase YPN_RS07930 PF10762 Protein of unknown function (DUF2583) YPN_RS07940 PF14572 Phosphoribosyl synthetase-associated domain YPN_RS07940 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPN_RS07950 PF08544 GHMP kinases C terminal YPN_RS07950 PF00288 GHMP kinases N terminal domain YPN_RS07955 PF03550 Outer membrane lipoprotein LolB YPN_RS07960 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPN_RS07960 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPN_RS07960 PF01488 Shikimate / quinate 5-dehydrogenase YPN_RS07965 PF00472 RF-1 domain YPN_RS07965 PF03462 PCRF domain YPN_RS07970 PF13847 Methyltransferase domain YPN_RS07970 PF17827 PrmC N-terminal domain YPN_RS07975 PF04247 Invasion gene expression up-regulator, SirB YPN_RS07980 PF13369 Transglutaminase-like superfamily YPN_RS07985 PF00793 DAHP synthetase I family YPN_RS07990 PF00916 Sulfate permease family YPN_RS07990 PF01740 STAS domain YPN_RS08005 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_RS08015 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS08020 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS08025 PF00005 ABC transporter YPN_RS08025 PF08402 TOBE domain YPN_RS08035 PF08402 TOBE domain YPN_RS08035 PF00005 ABC transporter YPN_RS08040 PF03009 Glycerophosphoryl diester phosphodiesterase family YPN_RS08045 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPN_RS08045 PF00480 ROK family YPN_RS08055 PF02811 PHP domain YPN_RS08060 PF02613 Nitrate reductase delta subunit YPN_RS08065 PF07273 Protein of unknown function (DUF1439) YPN_RS08070 PF07690 Major Facilitator Superfamily YPN_RS08075 PF13302 Acetyltransferase (GNAT) domain YPN_RS08080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_RS08085 PF03023 Lipid II flippase MurJ YPN_RS08090 PF08479 POTRA domain, ShlB-type YPN_RS08090 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_RS08090 PF17287 POTRA domain YPN_RS08095 PF13332 Hemagglutinin repeat YPN_RS08095 PF05860 haemagglutination activity domain YPN_RS08100 PF05746 DALR anticodon binding domain YPN_RS08100 PF03485 Arginyl tRNA synthetase N terminal domain YPN_RS08100 PF00750 tRNA synthetases class I (R) YPN_RS08105 PF06185 YecM protein YPN_RS08110 PF03932 CutC family YPN_RS08115 PF08003 Protein of unknown function (DUF1698) YPN_RS08120 PF13649 Methyltransferase domain YPN_RS08125 PF01124 MAPEG family YPN_RS08130 PF01904 Protein of unknown function DUF72 YPN_RS08135 PF02938 GAD domain YPN_RS08135 PF00152 tRNA synthetases class II (D, K and N) YPN_RS08135 PF01336 OB-fold nucleic acid binding domain YPN_RS08140 PF00293 NUDIX domain YPN_RS08145 PF01709 Transcriptional regulator YPN_RS08150 PF02075 Crossover junction endodeoxyribonuclease RuvC YPN_RS08155 PF07499 RuvA, C-terminal domain YPN_RS08155 PF01330 RuvA N terminal domain YPN_RS08160 PF05491 RuvB C-terminal winged helix domain YPN_RS08160 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPN_RS08160 PF17864 RuvB AAA lid domain YPN_RS08165 PF00950 ABC 3 transport family YPN_RS08170 PF00005 ABC transporter YPN_RS08175 PF01297 Zinc-uptake complex component A periplasmic YPN_RS08180 PF01476 LysM domain YPN_RS08180 PF08525 Opacity-associated protein A N-terminal motif YPN_RS08180 PF01551 Peptidase family M23 YPN_RS08185 PF03279 Bacterial lipid A biosynthesis acyltransferase YPN_RS08190 PF00224 Pyruvate kinase, barrel domain YPN_RS08190 PF02887 Pyruvate kinase, alpha/beta domain YPN_RS08195 PF01380 SIS domain YPN_RS08195 PF01418 Helix-turn-helix domain, rpiR family YPN_RS08200 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPN_RS08200 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPN_RS08205 PF01081 KDPG and KHG aldolase YPN_RS08210 PF00893 Small Multidrug Resistance protein YPN_RS08215 PF00893 Small Multidrug Resistance protein YPN_RS08220 PF01042 Endoribonuclease L-PSP YPN_RS08225 PF04851 Type III restriction enzyme, res subunit YPN_RS08225 PF13307 Helicase C-terminal domain YPN_RS08230 PF00814 Glycoprotease family YPN_RS08235 PF03843 Outer membrane lipoprotein Slp family YPN_RS08240 PF00501 AMP-binding enzyme YPN_RS08240 PF13193 AMP-binding enzyme C-terminal domain YPN_RS08245 PF00570 HRDC domain YPN_RS08245 PF01612 3'-5' exonuclease YPN_RS08250 PF03776 Septum formation topological specificity factor MinE YPN_RS08255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPN_RS08260 PF03775 Septum formation inhibitor MinC, C-terminal domain YPN_RS08260 PF05209 Septum formation inhibitor MinC, N-terminal domain YPN_RS08265 PF05166 YcgL domain YPN_RS08270 PF13406 Transglycosylase SLT domain YPN_RS08275 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_RS08280 PF03692 Putative zinc- or iron-chelating domain YPN_RS08285 PF12167 Arm DNA-binding domain YPN_RS08285 PF00589 Phage integrase family YPN_RS08290 PF02796 Helix-turn-helix domain of resolvase YPN_RS08290 PF00665 Integrase core domain YPN_RS08295 PF01695 IstB-like ATP binding protein YPN_RS08310 PF05772 NinB protein YPN_RS08320 PF06530 Phage antitermination protein Q YPN_RS08385 PF00872 Transposase, Mutator family YPN_RS08475 PF01797 Transposase IS200 like YPN_RS08550 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPN_RS08560 PF00872 Transposase, Mutator family YPN_RS08570 PF00266 Aminotransferase class-V YPN_RS08585 PF02600 Disulfide bond formation protein DsbB YPN_RS08590 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPN_RS08595 PF07840 FadR C-terminal domain YPN_RS08595 PF00392 Bacterial regulatory proteins, gntR family YPN_RS08600 PF04293 SpoVR like protein YPN_RS08605 PF01266 FAD dependent oxidoreductase YPN_RS08610 PF07690 Major Facilitator Superfamily YPN_RS08615 PF02678 Pirin YPN_RS08615 PF05726 Pirin C-terminal cupin domain YPN_RS08620 PF03466 LysR substrate binding domain YPN_RS08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS08630 PF04285 Protein of unknown function (DUF444) YPN_RS08635 PF08298 PrkA AAA domain YPN_RS08635 PF06798 PrkA serine protein kinase C-terminal domain YPN_RS08640 PF06629 MltA-interacting protein MipA YPN_RS08645 PF01263 Aldose 1-epimerase YPN_RS08650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPN_RS08650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPN_RS08655 PF01641 SelR domain YPN_RS08660 PF07023 Protein of unknown function (DUF1315) YPN_RS08665 PF00857 Isochorismatase family YPN_RS08670 PF17763 Glutaminase/Asparaginase C-terminal domain YPN_RS08670 PF00710 Asparaginase, N-terminal YPN_RS08675 PF01343 Peptidase family S49 YPN_RS08680 PF00881 Nitroreductase family YPN_RS08685 PF02769 AIR synthase related protein, C-terminal domain YPN_RS08685 PF00586 AIR synthase related protein, N-terminal domain YPN_RS08690 PF01751 Toprim domain YPN_RS08690 PF01131 DNA topoisomerase YPN_RS08695 PF07383 Protein of unknown function (DUF1496) YPN_RS08700 PF00293 NUDIX domain YPN_RS08705 PF03372 Endonuclease/Exonuclease/phosphatase family YPN_RS08710 PF03466 LysR substrate binding domain YPN_RS08710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS08720 PF00872 Transposase, Mutator family YPN_RS08725 PF00551 Formyl transferase YPN_RS08725 PF01842 ACT domain YPN_RS08730 PF02810 SEC-C motif YPN_RS08735 PF00072 Response regulator receiver domain YPN_RS08740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPN_RS08740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPN_RS08740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPN_RS08745 PF00816 H-NS histone family YPN_RS08750 PF00265 Thymidine kinase YPN_RS08755 PF01695 IstB-like ATP binding protein YPN_RS08760 PF02796 Helix-turn-helix domain of resolvase YPN_RS08760 PF00665 Integrase core domain YPN_RS08765 PF00171 Aldehyde dehydrogenase family YPN_RS08765 PF00465 Iron-containing alcohol dehydrogenase YPN_RS08770 PF01914 MarC family integral membrane protein YPN_RS08775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_RS08780 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS08785 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_RS08785 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS08790 PF00005 ABC transporter YPN_RS08790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_RS08795 PF00005 ABC transporter YPN_RS08795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_RS08810 PF04269 Protein of unknown function, DUF440 YPN_RS08815 PF13091 PLD-like domain YPN_RS08815 PF13396 Phospholipase_D-nuclease N-terminal YPN_RS08820 PF13505 Outer membrane protein beta-barrel domain YPN_RS08835 PF03795 YCII-related domain YPN_RS08840 PF03544 Gram-negative bacterial TonB protein C-terminal YPN_RS08845 PF00872 Transposase, Mutator family YPN_RS08850 PF03061 Thioesterase superfamily YPN_RS08855 PF04279 Intracellular septation protein A YPN_RS08880 PF03922 OmpW family YPN_RS08890 PF00290 Tryptophan synthase alpha chain YPN_RS08895 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS08900 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPN_RS08900 PF00218 Indole-3-glycerol phosphate synthase YPN_RS08905 PF02885 Glycosyl transferase family, helical bundle domain YPN_RS08905 PF00591 Glycosyl transferase family, a/b domain YPN_RS08910 PF00117 Glutamine amidotransferase class-I YPN_RS08915 PF00425 chorismate binding enzyme YPN_RS08915 PF04715 Anthranilate synthase component I, N terminal region YPN_RS08930 PF02811 PHP domain YPN_RS08935 PF01300 Telomere recombination YPN_RS08940 PF00849 RNA pseudouridylate synthase YPN_RS08940 PF01479 S4 domain YPN_RS08945 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPN_RS08950 PF00106 short chain dehydrogenase YPN_RS08955 PF08496 Peptidase family S49 N-terminal YPN_RS08955 PF01343 Peptidase family S49 YPN_RS08960 PF10692 Protein of unknown function (DUF2498) YPN_RS08970 PF01396 Topoisomerase DNA binding C4 zinc finger YPN_RS08970 PF01131 DNA topoisomerase YPN_RS08970 PF01751 Toprim domain YPN_RS08970 PF08272 Topoisomerase I zinc-ribbon-like YPN_RS08975 PF03466 LysR substrate binding domain YPN_RS08975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS08985 PF00694 Aconitase C-terminal domain YPN_RS08985 PF00330 Aconitase family (aconitate hydratase) YPN_RS08990 PF00925 GTP cyclohydrolase II YPN_RS08995 PF01569 PAP2 superfamily YPN_RS09000 PF06305 Lipopolysaccharide assembly protein A domain YPN_RS09005 PF18073 Rubredoxin metal binding domain YPN_RS09015 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPN_RS09020 PF01253 Translation initiation factor SUI1 YPN_RS09025 PF05433 Glycine zipper 2TM domain YPN_RS09030 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_RS09040 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPN_RS09045 PF04328 Selenoprotein, putative YPN_RS09050 PF13722 5TM C-terminal transporter carbon starvation CstA YPN_RS09050 PF02554 Carbon starvation protein CstA YPN_RS09055 PF17876 Cold shock domain YPN_RS09055 PF08206 Ribonuclease B OB domain YPN_RS09055 PF00773 RNB domain YPN_RS09055 PF00575 S1 RNA binding domain YPN_RS09060 PF07690 Major Facilitator Superfamily YPN_RS09065 PF01370 NAD dependent epimerase/dehydratase family YPN_RS09070 PF10576 Iron-sulfur binding domain of endonuclease III YPN_RS09070 PF00633 Helix-hairpin-helix motif YPN_RS09070 PF00730 HhH-GPD superfamily base excision DNA repair protein YPN_RS09075 PF02508 Rnf-Nqr subunit, membrane protein YPN_RS09080 PF04205 FMN-binding domain YPN_RS09085 PF03116 NQR2, RnfD, RnfE family YPN_RS09090 PF06445 GyrI-like small molecule binding domain YPN_RS09090 PF12833 Helix-turn-helix domain YPN_RS09095 PF13237 4Fe-4S dicluster domain YPN_RS09095 PF13375 RnfC Barrel sandwich hybrid domain YPN_RS09095 PF10531 SLBB domain YPN_RS09095 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPN_RS09100 PF04060 Putative Fe-S cluster YPN_RS09105 PF02508 Rnf-Nqr subunit, membrane protein YPN_RS09110 PF10754 Protein of unknown function (DUF2569) YPN_RS09115 PF00005 ABC transporter YPN_RS09115 PF00664 ABC transporter transmembrane region YPN_RS09115 PF03412 Peptidase C39 family YPN_RS09120 PF00005 ABC transporter YPN_RS09120 PF00664 ABC transporter transmembrane region YPN_RS09125 PF13533 Biotin-lipoyl like YPN_RS09135 PF03412 Peptidase C39 family YPN_RS09135 PF00005 ABC transporter YPN_RS09135 PF00664 ABC transporter transmembrane region YPN_RS09140 PF02610 L-arabinose isomerase YPN_RS09140 PF11762 L-arabinose isomerase C-terminal domain YPN_RS09145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS09150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_RS09155 PF00005 ABC transporter YPN_RS09160 PF02653 Branched-chain amino acid transport system / permease component YPN_RS09170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_RS09170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_RS09175 PF13593 SBF-like CPA transporter family (DUF4137) YPN_RS09185 PF00872 Transposase, Mutator family YPN_RS09190 PF06097 Bacterial protein of unknown function (DUF945) YPN_RS09195 PF01238 Phosphomannose isomerase type I YPN_RS09200 PF00206 Lyase YPN_RS09200 PF10415 Fumarase C C-terminus YPN_RS09205 PF05472 DNA replication terminus site-binding protein (Ter protein) YPN_RS09215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS09215 PF03466 LysR substrate binding domain YPN_RS09220 PF00480 ROK family YPN_RS09230 PF00654 Voltage gated chloride channel YPN_RS09240 PF00356 Bacterial regulatory proteins, lacI family YPN_RS09250 PF13407 Periplasmic binding protein domain YPN_RS09255 PF09084 NMT1/THI5 like YPN_RS09260 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS09265 PF00005 ABC transporter YPN_RS09270 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPN_RS09270 PF01048 Phosphorylase superfamily YPN_RS09295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_RS09295 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_RS09295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_RS09300 PF01842 ACT domain YPN_RS09305 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS09320 PF00245 Alkaline phosphatase YPN_RS09325 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPN_RS09325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPN_RS09330 PF00027 Cyclic nucleotide-binding domain YPN_RS09330 PF13545 Crp-like helix-turn-helix domain YPN_RS09335 PF00582 Universal stress protein family YPN_RS09340 PF02233 NAD(P) transhydrogenase beta subunit YPN_RS09345 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPN_RS09345 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPN_RS09345 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPN_RS09355 PF07338 Protein of unknown function (DUF1471) YPN_RS09360 PF13520 Amino acid permease YPN_RS09370 PF00072 Response regulator receiver domain YPN_RS09370 PF00486 Transcriptional regulatory protein, C terminal YPN_RS09375 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS09375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS09375 PF00672 HAMP domain YPN_RS09385 PF00872 Transposase, Mutator family YPN_RS09390 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPN_RS09405 PF14431 YwqJ-like deaminase YPN_RS09405 PF18807 Tripartite Tc toxins repeat YPN_RS09435 PF00089 Trypsin YPN_RS09450 PF04408 Helicase associated domain (HA2) YPN_RS09450 PF11898 Domain of unknown function (DUF3418) YPN_RS09450 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPN_RS09450 PF00270 DEAD/DEAH box helicase YPN_RS09450 PF00271 Helicase conserved C-terminal domain YPN_RS09455 PF02525 Flavodoxin-like fold YPN_RS09460 PF00325 Bacterial regulatory proteins, crp family YPN_RS09460 PF04198 Putative sugar-binding domain YPN_RS09465 PF01232 Mannitol dehydrogenase Rossmann domain YPN_RS09465 PF08125 Mannitol dehydrogenase C-terminal domain YPN_RS09470 PF07027 Protein of unknown function (DUF1318) YPN_RS09475 PF13617 YnbE-like lipoprotein YPN_RS09480 PF11739 Dicarboxylate transport YPN_RS09485 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_RS09485 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_RS09490 PF03724 META domain YPN_RS09495 PF03891 Domain of unknown function (DUF333) YPN_RS09500 PF02308 MgtC family YPN_RS09505 PF00893 Small Multidrug Resistance protein YPN_RS09510 PF10371 Domain of unknown function YPN_RS09510 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPN_RS09510 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPN_RS09510 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPN_RS09510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_RS09515 PF01171 PP-loop family YPN_RS09520 PF07859 alpha/beta hydrolase fold YPN_RS09530 PF01544 CorA-like Mg2+ transporter protein YPN_RS09535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_RS09540 PF00246 Zinc carboxypeptidase YPN_RS09545 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPN_RS09545 PF13378 Enolase C-terminal domain-like YPN_RS09550 PF08534 Redoxin YPN_RS09555 PF01797 Transposase IS200 like YPN_RS09560 PF18024 Helix-turn-helix domain YPN_RS09560 PF00158 Sigma-54 interaction domain YPN_RS09565 PF09722 Protein of unknown function (DUF2384) YPN_RS09570 PF08808 RES domain YPN_RS09575 PF05128 Domain of unknown function (DUF697) YPN_RS09580 PF04317 YcjX-like family, DUF463 YPN_RS09590 PF04024 PspC domain YPN_RS09595 PF06667 Phage shock protein B YPN_RS09600 PF04012 PspA/IM30 family YPN_RS09605 PF00158 Sigma-54 interaction domain YPN_RS09605 PF02954 Bacterial regulatory protein, Fis family YPN_RS09625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_RS09630 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS09635 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS09635 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_RS09640 PF00005 ABC transporter YPN_RS09640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_RS09645 PF00005 ABC transporter YPN_RS09655 PF00854 POT family YPN_RS09660 PF04893 Yip1 domain YPN_RS09665 PF11656 YjbD family (DUF3811) YPN_RS09670 PF00043 Glutathione S-transferase, C-terminal domain YPN_RS09670 PF02798 Glutathione S-transferase, N-terminal domain YPN_RS09675 PF08543 Phosphomethylpyrimidine kinase YPN_RS09680 PF00579 tRNA synthetases class I (W and Y) YPN_RS09680 PF01479 S4 domain YPN_RS09685 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPN_RS09685 PF01243 Pyridoxamine 5'-phosphate oxidase YPN_RS09690 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPN_RS09695 PF03702 Anhydro-N-acetylmuramic acid kinase YPN_RS09700 PF05433 Glycine zipper 2TM domain YPN_RS09705 PF01047 MarR family YPN_RS09710 PF08019 Phosphoethanolamine transferase EptA/EptB YPN_RS09710 PF00884 Sulfatase YPN_RS09715 PF00440 Bacterial regulatory proteins, tetR family YPN_RS09715 PF16925 Tetracyclin repressor-like, C-terminal domain YPN_RS09720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPN_RS09725 PF14431 YwqJ-like deaminase YPN_RS09725 PF18807 Tripartite Tc toxins repeat YPN_RS09730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPN_RS09735 PF00929 Exonuclease YPN_RS09740 PF00462 Glutaredoxin YPN_RS09750 PF00877 NlpC/P60 family YPN_RS09755 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPN_RS09755 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPN_RS09760 PF00356 Bacterial regulatory proteins, lacI family YPN_RS09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS09765 PF03466 LysR substrate binding domain YPN_RS09770 PF07690 Major Facilitator Superfamily YPN_RS09780 PF00677 Lumazine binding domain YPN_RS09785 PF01554 MatE YPN_RS09800 PF02887 Pyruvate kinase, alpha/beta domain YPN_RS09800 PF00224 Pyruvate kinase, barrel domain YPN_RS09805 PF04728 Lipoprotein leucine-zipper YPN_RS09815 PF01367 5'-3' exonuclease, C-terminal SAM fold YPN_RS09815 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPN_RS09820 PF00665 Integrase core domain YPN_RS09820 PF02796 Helix-turn-helix domain of resolvase YPN_RS09825 PF01695 IstB-like ATP binding protein YPN_RS09830 PF17969 L,D-transpeptidase C-terminal domain YPN_RS09830 PF01476 LysM domain YPN_RS09830 PF03734 L,D-transpeptidase catalytic domain YPN_RS09835 PF02657 Fe-S metabolism associated domain YPN_RS09840 PF00266 Aminotransferase class-V YPN_RS09845 PF01458 Uncharacterized protein family (UPF0051) YPN_RS09850 PF00005 ABC transporter YPN_RS09855 PF01458 Uncharacterized protein family (UPF0051) YPN_RS09860 PF01521 Iron-sulphur cluster biosynthesis YPN_RS09870 PF03061 Thioesterase superfamily YPN_RS09875 PF02913 FAD linked oxidases, C-terminal domain YPN_RS09875 PF01565 FAD binding domain YPN_RS09875 PF13183 4Fe-4S dicluster domain YPN_RS09880 PF01594 AI-2E family transporter YPN_RS09885 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPN_RS09885 PF02896 PEP-utilising enzyme, TIM barrel domain YPN_RS09885 PF00391 PEP-utilising enzyme, mobile domain YPN_RS09890 PF03618 Kinase/pyrophosphorylase YPN_RS09895 PF00793 DAHP synthetase I family YPN_RS09905 PF10437 Bacterial lipoate protein ligase C-terminus YPN_RS09905 PF03099 Biotin/lipoate A/B protein ligase family YPN_RS09910 PF00877 NlpC/P60 family YPN_RS09920 PF00892 EamA-like transporter family YPN_RS09925 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPN_RS09930 PF01522 Polysaccharide deacetylase YPN_RS09935 PF00551 Formyl transferase YPN_RS09935 PF02911 Formyl transferase, C-terminal domain YPN_RS09935 PF01370 NAD dependent epimerase/dehydratase family YPN_RS09940 PF00535 Glycosyl transferase family 2 YPN_RS09945 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPN_RS09950 PF00005 ABC transporter YPN_RS09955 PF00255 Glutathione peroxidase YPN_RS09960 PF01032 FecCD transport family YPN_RS09970 PF00216 Bacterial DNA-binding protein YPN_RS09975 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPN_RS09975 PF01588 Putative tRNA binding domain YPN_RS09975 PF03147 Ferredoxin-fold anticodon binding domain YPN_RS09975 PF03483 B3/4 domain YPN_RS09975 PF03484 tRNA synthetase B5 domain YPN_RS09980 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPN_RS09980 PF01409 tRNA synthetases class II core domain (F) YPN_RS09985 PF00453 Ribosomal protein L20 YPN_RS09990 PF01632 Ribosomal protein L35 YPN_RS09995 PF00707 Translation initiation factor IF-3, C-terminal domain YPN_RS09995 PF05198 Translation initiation factor IF-3, N-terminal domain YPN_RS10000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPN_RS10000 PF03129 Anticodon binding domain YPN_RS10000 PF02824 TGS domain YPN_RS10000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPN_RS10005 PF13619 KTSC domain YPN_RS10020 PF01914 MarC family integral membrane protein YPN_RS10025 PF01464 Transglycosylase SLT domain YPN_RS10030 PF01297 Zinc-uptake complex component A periplasmic YPN_RS10035 PF00005 ABC transporter YPN_RS10040 PF00950 ABC 3 transport family YPN_RS10045 PF00950 ABC 3 transport family YPN_RS10055 PF03881 Fructosamine kinase YPN_RS10060 PF14002 YniB-like protein YPN_RS10065 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS10070 PF00872 Transposase, Mutator family YPN_RS10075 PF00872 Transposase, Mutator family YPN_RS10085 PF07883 Cupin domain YPN_RS10090 PF04962 KduI/IolB family YPN_RS10100 PF06917 Periplasmic pectate lyase YPN_RS10105 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS10110 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS10115 PF17912 MalK OB fold domain YPN_RS10115 PF03459 TOBE domain YPN_RS10115 PF00005 ABC transporter YPN_RS10120 PF01547 Bacterial extracellular solute-binding protein YPN_RS10125 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPN_RS10130 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPN_RS10135 PF00375 Sodium:dicarboxylate symporter family YPN_RS10140 PF01510 N-acetylmuramoyl-L-alanine amidase YPN_RS10145 PF09339 IclR helix-turn-helix domain YPN_RS10145 PF01614 Bacterial transcriptional regulator YPN_RS10150 PF14583 Oligogalacturonate lyase YPN_RS10155 PF07690 Major Facilitator Superfamily YPN_RS10160 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS10160 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS10170 PF13953 PapC C-terminal domain YPN_RS10170 PF00577 Outer membrane usher protein YPN_RS10170 PF13954 PapC N-terminal domain YPN_RS10175 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS10175 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS10180 PF00419 Fimbrial protein YPN_RS10185 PF01435 Peptidase family M48 YPN_RS10190 PF00595 PDZ domain YPN_RS10190 PF11818 C-terminal domain of tail specific protease (DUF3340) YPN_RS10190 PF03572 Peptidase family S41 YPN_RS10190 PF17804 Tail specific protease N-terminal domain YPN_RS10195 PF04352 ProQ/FINO family YPN_RS10195 PF17516 ProQ C-terminal domain YPN_RS10200 PF13185 GAF domain YPN_RS10205 PF04403 Paraquat-inducible protein A YPN_RS10210 PF02470 MlaD protein YPN_RS10230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS10230 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS10245 PF07351 Protein of unknown function (DUF1480) YPN_RS10255 PF00665 Integrase core domain YPN_RS10255 PF02796 Helix-turn-helix domain of resolvase YPN_RS10260 PF01695 IstB-like ATP binding protein YPN_RS10285 PF01168 Alanine racemase, N-terminal domain YPN_RS10285 PF00842 Alanine racemase, C-terminal domain YPN_RS10295 PF05658 Head domain of trimeric autotransporter adhesin YPN_RS10295 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS10295 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_RS10295 PF03895 YadA-like membrane anchor domain YPN_RS10300 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS10300 PF05658 Head domain of trimeric autotransporter adhesin YPN_RS10300 PF03895 YadA-like membrane anchor domain YPN_RS10300 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_RS10305 PF01510 N-acetylmuramoyl-L-alanine amidase YPN_RS10315 PF04344 Chemotaxis phosphatase, CheZ YPN_RS10320 PF00072 Response regulator receiver domain YPN_RS10325 PF01339 CheB methylesterase YPN_RS10325 PF00072 Response regulator receiver domain YPN_RS10330 PF01739 CheR methyltransferase, SAM binding domain YPN_RS10330 PF03705 CheR methyltransferase, all-alpha domain YPN_RS10335 PF02203 Tar ligand binding domain homologue YPN_RS10335 PF00672 HAMP domain YPN_RS10335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_RS10340 PF02203 Tar ligand binding domain homologue YPN_RS10340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_RS10340 PF00672 HAMP domain YPN_RS10355 PF12951 Passenger-associated-transport-repeat YPN_RS10360 PF08348 YheO-like PAS domain YPN_RS10360 PF13309 HTH domain YPN_RS10370 PF01042 Endoribonuclease L-PSP YPN_RS10375 PF07690 Major Facilitator Superfamily YPN_RS10380 PF01584 CheW-like domain YPN_RS10385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS10385 PF02895 Signal transducing histidine kinase, homodimeric domain YPN_RS10385 PF09078 CheY binding YPN_RS10385 PF01584 CheW-like domain YPN_RS10385 PF01627 Hpt domain YPN_RS10390 PF00691 OmpA family YPN_RS10390 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPN_RS10395 PF01618 MotA/TolQ/ExbB proton channel family YPN_RS10400 PF05280 Flagellar transcriptional activator (FlhC) YPN_RS10410 PF00689 Cation transporting ATPase, C-terminus YPN_RS10410 PF00690 Cation transporter/ATPase, N-terminus YPN_RS10415 PF02308 MgtC family YPN_RS10430 PF10781 Dextransucrase DSRB YPN_RS10435 PF00313 'Cold-shock' DNA-binding domain YPN_RS10440 PF02929 Beta galactosidase small chain YPN_RS10440 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPN_RS10440 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPN_RS10440 PF16353 Domain of unknown function(DUF4981) YPN_RS10440 PF00703 Glycosyl hydrolases family 2 YPN_RS10445 PF08659 KR domain YPN_RS10445 PF16197 Ketoacyl-synthetase C-terminal extension YPN_RS10445 PF00107 Zinc-binding dehydrogenase YPN_RS10445 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_RS10445 PF14765 Polyketide synthase dehydratase YPN_RS10445 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_RS10445 PF08240 Alcohol dehydrogenase GroES-like domain YPN_RS10445 PF00698 Acyl transferase domain YPN_RS10445 PF00550 Phosphopantetheine attachment site YPN_RS10450 PF10777 Inner membrane protein YlaC YPN_RS10455 PF01037 Lrp/AsnC ligand binding domain YPN_RS10455 PF13404 AsnC-type helix-turn-helix domain YPN_RS10465 PF14001 YdfZ protein YPN_RS10470 PF00328 Histidine phosphatase superfamily (branch 2) YPN_RS10480 PF01638 HxlR-like helix-turn-helix YPN_RS10485 PF05368 NmrA-like family YPN_RS10490 PF08447 PAS fold YPN_RS10490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_RS10500 PF00356 Bacterial regulatory proteins, lacI family YPN_RS10500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_RS10505 PF00180 Isocitrate/isopropylmalate dehydrogenase YPN_RS10510 PF00849 RNA pseudouridylate synthase YPN_RS10515 PF00293 NUDIX domain YPN_RS10525 PF04356 Protein of unknown function (DUF489) YPN_RS10530 PF08328 Adenylosuccinate lyase C-terminal YPN_RS10530 PF00206 Lyase YPN_RS10540 PF00072 Response regulator receiver domain YPN_RS10540 PF00486 Transcriptional regulatory protein, C terminal YPN_RS10545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS10545 PF08918 PhoQ Sensor YPN_RS10550 PF08007 Cupin superfamily protein YPN_RS10555 PF07687 Peptidase dimerisation domain YPN_RS10555 PF01546 Peptidase family M20/M25/M40 YPN_RS10560 PF02146 Sir2 family YPN_RS10565 PF00480 ROK family YPN_RS10570 PF12704 MacB-like periplasmic core domain YPN_RS10570 PF02687 FtsX-like permease family YPN_RS10575 PF00005 ABC transporter YPN_RS10580 PF02687 FtsX-like permease family YPN_RS10580 PF12704 MacB-like periplasmic core domain YPN_RS10585 PF17757 UvrB interaction domain YPN_RS10585 PF02559 CarD-like/TRCF domain YPN_RS10585 PF03461 TRCF domain YPN_RS10585 PF00271 Helicase conserved C-terminal domain YPN_RS10585 PF00270 DEAD/DEAH box helicase YPN_RS10590 PF05433 Glycine zipper 2TM domain YPN_RS10595 PF00872 Transposase, Mutator family YPN_RS10610 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS10615 PF05728 Uncharacterised protein family (UPF0227) YPN_RS10620 PF00933 Glycosyl hydrolase family 3 N terminal domain YPN_RS10625 PF01636 Phosphotransferase enzyme family YPN_RS10630 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPN_RS10630 PF13036 Peptidoglycan-synthase activator LpoB YPN_RS10635 PF07233 Protein of unknown function (DUF1425) YPN_RS10640 PF01230 HIT domain YPN_RS10645 PF08501 Shikimate dehydrogenase substrate binding domain YPN_RS10655 PF02378 Phosphotransferase system, EIIC YPN_RS10655 PF00367 phosphotransferase system, EIIB YPN_RS10660 PF01026 TatD related DNase YPN_RS10665 PF09115 DNA polymerase III, delta subunit, C terminal YPN_RS10670 PF02223 Thymidylate kinase YPN_RS10675 PF02618 YceG-like family YPN_RS10680 PF01063 Amino-transferase class IV YPN_RS10690 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_RS10690 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_RS10695 PF00550 Phosphopantetheine attachment site YPN_RS10705 PF00698 Acyl transferase domain YPN_RS10710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPN_RS10710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPN_RS10715 PF02504 Fatty acid synthesis protein YPN_RS10720 PF01783 Ribosomal L32p protein family YPN_RS10725 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPN_RS10730 PF02545 Maf-like protein YPN_RS10735 PF00849 RNA pseudouridylate synthase YPN_RS10735 PF01479 S4 domain YPN_RS10740 PF00575 S1 RNA binding domain YPN_RS10740 PF10150 Ribonuclease E/G family YPN_RS10740 PF12111 Polyribonucleotide phosphorylase C terminal YPN_RS10745 PF00872 Transposase, Mutator family YPN_RS10750 PF13991 BssS protein family YPN_RS10760 PF06183 DinI-like family YPN_RS10765 PF01979 Amidohydrolase family YPN_RS10770 PF03992 Antibiotic biosynthesis monooxygenase YPN_RS10775 PF00872 Transposase, Mutator family YPN_RS10780 PF01266 FAD dependent oxidoreductase YPN_RS10785 PF00196 Bacterial regulatory proteins, luxR family YPN_RS10790 PF01594 AI-2E family transporter YPN_RS10795 PF12368 Rhodanase C-terminal YPN_RS10795 PF00581 Rhodanese-like domain YPN_RS10795 PF17773 UPF0176 acylphosphatase like domain YPN_RS10820 PF00765 Autoinducer synthase YPN_RS10825 PF00196 Bacterial regulatory proteins, luxR family YPN_RS10825 PF03472 Autoinducer binding domain YPN_RS10830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS10830 PF03466 LysR substrate binding domain YPN_RS10840 PF00083 Sugar (and other) transporter YPN_RS10850 PF00248 Aldo/keto reductase family YPN_RS10855 PF09618 CRISPR-associated protein (Cas_Csy4) YPN_RS10860 PF09615 CRISPR-associated protein (Cas_Csy3) YPN_RS10865 PF09614 CRISPR-associated protein (Cas_Csy2) YPN_RS10870 PF09611 CRISPR-associated protein (Cas_Csy1) YPN_RS10880 PF01867 CRISPR associated protein Cas1 YPN_RS10885 PF00924 Mechanosensitive ion channel YPN_RS10905 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPN_RS10910 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS10915 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS10925 PF00356 Bacterial regulatory proteins, lacI family YPN_RS10930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPN_RS10930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPN_RS10930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPN_RS10930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPN_RS10935 PF00005 ABC transporter YPN_RS10935 PF17912 MalK OB fold domain YPN_RS10945 PF15526 Novel toxin 21 YPN_RS10945 PF05860 haemagglutination activity domain YPN_RS10945 PF13332 Hemagglutinin repeat YPN_RS10945 PF05594 Haemagluttinin repeat YPN_RS10945 PF04829 Pre-toxin domain with VENN motif YPN_RS10965 PF04829 Pre-toxin domain with VENN motif YPN_RS10965 PF13332 Hemagglutinin repeat YPN_RS10965 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS10965 PF05860 haemagglutination activity domain YPN_RS10985 PF04829 Pre-toxin domain with VENN motif YPN_RS10985 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS10985 PF05860 haemagglutination activity domain YPN_RS10985 PF13332 Hemagglutinin repeat YPN_RS10990 PF08479 POTRA domain, ShlB-type YPN_RS10990 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_RS10990 PF17287 POTRA domain YPN_RS10995 PF00970 Oxidoreductase FAD-binding domain YPN_RS10995 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_RS10995 PF00175 Oxidoreductase NAD-binding domain YPN_RS11005 PF02028 BCCT, betaine/carnitine/choline family transporter YPN_RS11015 PF00180 Isocitrate/isopropylmalate dehydrogenase YPN_RS11020 PF03466 LysR substrate binding domain YPN_RS11020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS11025 PF00356 Bacterial regulatory proteins, lacI family YPN_RS11030 PF02653 Branched-chain amino acid transport system / permease component YPN_RS11035 PF00005 ABC transporter YPN_RS11040 PF13407 Periplasmic binding protein domain YPN_RS11045 PF00107 Zinc-binding dehydrogenase YPN_RS11045 PF08240 Alcohol dehydrogenase GroES-like domain YPN_RS11065 PF13505 Outer membrane protein beta-barrel domain YPN_RS11070 PF00892 EamA-like transporter family YPN_RS11080 PF13649 Methyltransferase domain YPN_RS11085 PF00210 Ferritin-like domain YPN_RS11095 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS11100 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS11105 PF00005 ABC transporter YPN_RS11110 PF08447 PAS fold YPN_RS11110 PF13426 PAS domain YPN_RS11110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_RS11115 PF02796 Helix-turn-helix domain of resolvase YPN_RS11115 PF00665 Integrase core domain YPN_RS11120 PF01695 IstB-like ATP binding protein YPN_RS11125 PF05971 RNA methyltransferase YPN_RS11130 PF07338 Protein of unknown function (DUF1471) YPN_RS11135 PF02885 Glycosyl transferase family, helical bundle domain YPN_RS11140 PF00501 AMP-binding enzyme YPN_RS11140 PF13193 AMP-binding enzyme C-terminal domain YPN_RS11145 PF13378 Enolase C-terminal domain-like YPN_RS11150 PF00378 Enoyl-CoA hydratase/isomerase YPN_RS11155 PF12697 Alpha/beta hydrolase family YPN_RS11160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_RS11160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_RS11160 PF16582 Middle domain of thiamine pyrophosphate YPN_RS11165 PF00425 chorismate binding enzyme YPN_RS11175 PF05957 Bacterial protein of unknown function (DUF883) YPN_RS11190 PF00920 Dehydratase family YPN_RS11195 PF03928 Haem-degrading YPN_RS11200 PF07690 Major Facilitator Superfamily YPN_RS11205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_RS11205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_RS11215 PF00356 Bacterial regulatory proteins, lacI family YPN_RS11220 PF02638 Glycosyl hydrolase-like 10 YPN_RS11225 PF00106 short chain dehydrogenase YPN_RS11230 PF01202 Shikimate kinase YPN_RS11235 PF04074 YhcH/YjgK/YiaL YPN_RS11245 PF00361 Proton-conducting membrane transporter YPN_RS11250 PF00361 Proton-conducting membrane transporter YPN_RS11255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPN_RS11255 PF00361 Proton-conducting membrane transporter YPN_RS11260 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPN_RS11265 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPN_RS11270 PF12838 4Fe-4S dicluster domain YPN_RS11275 PF00146 NADH dehydrogenase YPN_RS11280 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPN_RS11280 PF01568 Molydopterin dinucleotide binding domain YPN_RS11280 PF00384 Molybdopterin oxidoreductase YPN_RS11280 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_RS11285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPN_RS11285 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPN_RS11285 PF10531 SLBB domain YPN_RS11295 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPN_RS11295 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPN_RS11300 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPN_RS11305 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPN_RS11310 PF03466 LysR substrate binding domain YPN_RS11310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS11320 PF00155 Aminotransferase class I and II YPN_RS11335 PF02080 TrkA-C domain YPN_RS11335 PF03600 Citrate transporter YPN_RS11340 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS11345 PF03887 YfbU domain YPN_RS11350 PF04217 Protein of unknown function, DUF412 YPN_RS11360 PF00871 Acetokinase family YPN_RS11365 PF01515 Phosphate acetyl/butaryl transferase YPN_RS11365 PF07085 DRTGG domain YPN_RS11370 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_RS11370 PF00356 Bacterial regulatory proteins, lacI family YPN_RS11375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_RS11390 PF03611 PTS system sugar-specific permease component YPN_RS11395 PF00293 NUDIX domain YPN_RS11400 PF12850 Calcineurin-like phosphoesterase superfamily domain YPN_RS11410 PF08338 Domain of unknown function (DUF1731) YPN_RS11410 PF01370 NAD dependent epimerase/dehydratase family YPN_RS11415 PF00005 ABC transporter YPN_RS11420 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS11425 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS11430 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS11435 PF02441 Flavoprotein YPN_RS11440 PF00156 Phosphoribosyl transferase domain YPN_RS11445 PF02674 Colicin V production protein YPN_RS11450 PF05036 Sporulation related domain YPN_RS11455 PF08245 Mur ligase middle domain YPN_RS11455 PF02875 Mur ligase family, glutamate ligase domain YPN_RS11460 PF17848 Acetyl-coA carboxylase zinc finger domain YPN_RS11460 PF01039 Carboxyl transferase domain YPN_RS11465 PF09335 SNARE associated Golgi protein YPN_RS11470 PF01416 tRNA pseudouridine synthase YPN_RS11475 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPN_RS11475 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPN_RS11480 PF11890 Domain of unknown function (DUF3410) YPN_RS11480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_RS11480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_RS11495 PF00892 EamA-like transporter family YPN_RS11505 PF00419 Fimbrial protein YPN_RS11510 PF01177 Asp/Glu/Hydantoin racemase YPN_RS11515 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_RS11515 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_RS11520 PF01266 FAD dependent oxidoreductase YPN_RS11520 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPN_RS11525 PF08891 YfcL protein YPN_RS11530 PF04315 Elongation factor P hydroxylase YPN_RS11535 PF01925 Sulfite exporter TauE/SafE YPN_RS11540 PF03411 Penicillin-insensitive murein endopeptidase YPN_RS11545 PF01264 Chorismate synthase YPN_RS11550 PF05175 Methyltransferase small domain YPN_RS11555 PF01713 Smr domain YPN_RS11565 PF00300 Histidine phosphatase superfamily (branch 1) YPN_RS11570 PF00378 Enoyl-CoA hydratase/isomerase YPN_RS11570 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPN_RS11570 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPN_RS11575 PF00108 Thiolase, N-terminal domain YPN_RS11575 PF02803 Thiolase, C-terminal domain YPN_RS11580 PF04175 Protein of unknown function (DUF406) YPN_RS11585 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPN_RS11590 PF04333 MlaA lipoprotein YPN_RS11595 PF03918 Cytochrome C biogenesis protein YPN_RS11600 PF03918 Cytochrome C biogenesis protein YPN_RS11605 PF08534 Redoxin YPN_RS11610 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPN_RS11610 PF01578 Cytochrome C assembly protein YPN_RS11615 PF03100 CcmE YPN_RS11620 PF04995 Heme exporter protein D (CcmD) YPN_RS11625 PF01578 Cytochrome C assembly protein YPN_RS11630 PF03379 CcmB protein YPN_RS11635 PF00005 ABC transporter YPN_RS11650 PF04011 LemA family YPN_RS11660 PF03831 PhnA domain YPN_RS11660 PF08274 PhnA Zinc-Ribbon YPN_RS11675 PF07024 ImpE protein YPN_RS11690 PF04717 Type VI secretion system, phage-baseplate injector YPN_RS11695 PF06761 Intracellular multiplication and human macrophage-killing YPN_RS11695 PF14331 ImcF-related N-terminal domain YPN_RS11695 PF06744 Type VI secretion protein IcmF C-terminal YPN_RS11705 PF01695 IstB-like ATP binding protein YPN_RS11710 PF00665 Integrase core domain YPN_RS11710 PF02796 Helix-turn-helix domain of resolvase YPN_RS11740 PF08402 TOBE domain YPN_RS11740 PF00005 ABC transporter YPN_RS11745 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS11750 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS11760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_RS11760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_RS11765 PF00480 ROK family YPN_RS11770 PF07702 UTRA domain YPN_RS11770 PF00392 Bacterial regulatory proteins, gntR family YPN_RS11860 PF05638 Type VI secretion system effector, Hcp YPN_RS11905 PF01066 CDP-alcohol phosphatidyltransferase YPN_RS11910 PF01541 GIY-YIG catalytic domain YPN_RS11910 PF02151 UvrB/uvrC motif YPN_RS11910 PF08459 UvrC Helix-hairpin-helix N-terminal YPN_RS11915 PF00196 Bacterial regulatory proteins, luxR family YPN_RS11915 PF00072 Response regulator receiver domain YPN_RS11920 PF10769 Protein of unknown function (DUF2594) YPN_RS11925 PF06942 GlpM protein YPN_RS11940 PF13505 Outer membrane protein beta-barrel domain YPN_RS11950 PF00324 Amino acid permease YPN_RS11955 PF01344 Kelch motif YPN_RS11960 PF03358 NADPH-dependent FMN reductase YPN_RS11965 PF04261 Dyp-type peroxidase family YPN_RS11970 PF13473 Cupredoxin-like domain YPN_RS11970 PF09375 Imelysin YPN_RS11975 PF03239 Iron permease FTR1 family YPN_RS11980 PF00474 Sodium:solute symporter family YPN_RS11990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPN_RS11990 PF14850 DNA-binding domain of Proline dehydrogenase YPN_RS11990 PF01619 Proline dehydrogenase YPN_RS11990 PF00171 Aldehyde dehydrogenase family YPN_RS12005 PF00005 ABC transporter YPN_RS12010 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS12015 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS12020 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS12025 PF02899 Phage integrase, N-terminal SAM-like domain YPN_RS12030 PF04545 Sigma-70, region 4 YPN_RS12030 PF04539 Sigma-70 region 3 YPN_RS12030 PF04542 Sigma-70 region 2 YPN_RS12035 PF00700 Bacterial flagellin C-terminal helical region YPN_RS12035 PF08884 Flagellin D3 domain YPN_RS12035 PF00669 Bacterial flagellin N-terminal helical region YPN_RS12040 PF02465 Flagellar hook-associated protein 2 N-terminus YPN_RS12040 PF07196 Flagellin hook IN motif YPN_RS12040 PF07195 Flagellar hook-associated protein 2 C-terminus YPN_RS12045 PF02561 Flagellar protein FliS YPN_RS12050 PF05400 Flagellar protein FliT YPN_RS12060 PF12833 Helix-turn-helix domain YPN_RS12065 PF00672 HAMP domain YPN_RS12065 PF00211 Adenylate and Guanylate cyclase catalytic domain YPN_RS12065 PF02743 Cache domain YPN_RS12070 PF01966 HD domain YPN_RS12075 PF00730 HhH-GPD superfamily base excision DNA repair protein YPN_RS12090 PF02049 Flagellar hook-basal body complex protein FliE YPN_RS12095 PF08345 Flagellar M-ring protein C-terminal YPN_RS12095 PF01514 Secretory protein of YscJ/FliF family YPN_RS12100 PF14841 FliG middle domain YPN_RS12100 PF01706 FliG C-terminal domain YPN_RS12100 PF14842 FliG N-terminal domain YPN_RS12105 PF02108 Flagellar assembly protein FliH YPN_RS12110 PF18269 T3SS EscN ATPase C-terminal domain YPN_RS12110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_RS12115 PF02050 Flagellar FliJ protein YPN_RS12120 PF02120 Flagellar hook-length control protein FliK YPN_RS12125 PF03748 Flagellar basal body-associated protein FliL YPN_RS12130 PF02154 Flagellar motor switch protein FliM YPN_RS12130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPN_RS12135 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPN_RS12135 PF16973 Flagellar motor switch protein FliN N-terminal YPN_RS12140 PF04347 Flagellar biosynthesis protein, FliO YPN_RS12145 PF00813 FliP family YPN_RS12150 PF01313 Bacterial export proteins, family 3 YPN_RS12155 PF01311 Bacterial export proteins, family 1 YPN_RS12170 PF00294 pfkB family carbohydrate kinase YPN_RS12175 PF02653 Branched-chain amino acid transport system / permease component YPN_RS12180 PF00005 ABC transporter YPN_RS12185 PF13407 Periplasmic binding protein domain YPN_RS12190 PF02653 Branched-chain amino acid transport system / permease component YPN_RS12195 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_RS12200 PF04198 Putative sugar-binding domain YPN_RS12205 PF00669 Bacterial flagellin N-terminal helical region YPN_RS12210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS12210 PF00460 Flagella basal body rod protein YPN_RS12215 PF10135 Rod binding protein YPN_RS12215 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPN_RS12220 PF02119 Flagellar P-ring protein YPN_RS12225 PF02107 Flagellar L-ring protein YPN_RS12235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS12235 PF00460 Flagella basal body rod protein YPN_RS12240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS12240 PF07559 Flagellar basal body protein FlaE YPN_RS12240 PF00460 Flagella basal body rod protein YPN_RS12245 PF13860 FlgD Ig-like domain YPN_RS12245 PF13861 FlgD Tudor-like domain YPN_RS12245 PF03963 Flagellar hook capping protein - N-terminal region YPN_RS12250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPN_RS12250 PF00460 Flagella basal body rod protein YPN_RS12255 PF00460 Flagella basal body rod protein YPN_RS12260 PF13144 Chaperone for flagella basal body P-ring formation YPN_RS12260 PF17656 FlgA N-terminal domain YPN_RS12265 PF04316 Anti-sigma-28 factor, FlgM YPN_RS12270 PF05130 FlgN protein YPN_RS12275 PF07979 Intimin C-type lectin domain YPN_RS12275 PF02369 Bacterial Ig-like domain (group 1) YPN_RS12275 PF11924 Inverse autotransporter, beta-domain YPN_RS12275 PF09134 Invasin, domain 3 YPN_RS12285 PF02369 Bacterial Ig-like domain (group 1) YPN_RS12285 PF07979 Intimin C-type lectin domain YPN_RS12285 PF09134 Invasin, domain 3 YPN_RS12285 PF11924 Inverse autotransporter, beta-domain YPN_RS12290 PF06366 Flagellar protein FlhE YPN_RS12295 PF00771 FHIPEP family YPN_RS12300 PF01312 FlhB HrpN YscU SpaS Family YPN_RS12320 PF10709 Protein of unknown function (DUF2511) YPN_RS12330 PF04234 CopC domain YPN_RS12335 PF00210 Ferritin-like domain YPN_RS12340 PF06440 DNA polymerase III, theta subunit YPN_RS12345 PF00561 alpha/beta hydrolase fold YPN_RS12350 PF00326 Prolyl oligopeptidase family YPN_RS12350 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPN_RS12355 PF13995 YebF-like protein YPN_RS12360 PF04266 ASCH domain YPN_RS12365 PF07130 YebG protein YPN_RS12370 PF03880 DbpA RNA binding domain YPN_RS12370 PF00270 DEAD/DEAH box helicase YPN_RS12370 PF00271 Helicase conserved C-terminal domain YPN_RS12375 PF02222 ATP-grasp domain YPN_RS12380 PF03701 Uncharacterised protein family (UPF0181) YPN_RS12385 PF04715 Anthranilate synthase component I, N terminal region YPN_RS12385 PF00425 chorismate binding enzyme YPN_RS12390 PF00293 NUDIX domain YPN_RS12395 PF03313 Serine dehydratase alpha chain YPN_RS12395 PF03315 Serine dehydratase beta chain YPN_RS12400 PF01613 Flavin reductase like domain YPN_RS12405 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPN_RS12405 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPN_RS12410 PF07690 Major Facilitator Superfamily YPN_RS12415 PF03328 HpcH/HpaI aldolase/citrate lyase family YPN_RS12420 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_RS12425 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPN_RS12430 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPN_RS12435 PF00171 Aldehyde dehydrogenase family YPN_RS12440 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_RS12445 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_RS12450 PF01047 MarR family YPN_RS12455 PF03741 Integral membrane protein TerC family YPN_RS12455 PF03471 Transporter associated domain YPN_RS12460 PF03830 PTS system sorbose subfamily IIB component YPN_RS12460 PF03610 PTS system fructose IIA component YPN_RS12465 PF03609 PTS system sorbose-specific iic component YPN_RS12470 PF03613 PTS system mannose/fructose/sorbose family IID component YPN_RS12475 PF06173 Protein of unknown function (DUF986) YPN_RS12480 PF02659 Putative manganese efflux pump YPN_RS12485 PF00593 TonB dependent receptor YPN_RS12485 PF07715 TonB-dependent Receptor Plug Domain YPN_RS12500 PF13847 Methyltransferase domain YPN_RS12505 PF02578 Multi-copper polyphenol oxidoreductase laccase YPN_RS12510 PF00313 'Cold-shock' DNA-binding domain YPN_RS12515 PF10736 Protein of unknown function (DUF2627) YPN_RS12525 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPN_RS12530 PF00324 Amino acid permease YPN_RS12545 PF13974 YebO-like protein YPN_RS12550 PF13996 YobH-like protein YPN_RS12555 PF10964 Protein of unknown function (DUF2766) YPN_RS12565 PF12833 Helix-turn-helix domain YPN_RS12575 PF00005 ABC transporter YPN_RS12575 PF00664 ABC transporter transmembrane region YPN_RS12590 PF06167 Glucose-regulated metallo-peptidase M90 YPN_RS12600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_RS12600 PF00356 Bacterial regulatory proteins, lacI family YPN_RS12605 PF01695 IstB-like ATP binding protein YPN_RS12610 PF01695 IstB-like ATP binding protein YPN_RS12615 PF02796 Helix-turn-helix domain of resolvase YPN_RS12615 PF00665 Integrase core domain YPN_RS12620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_RS12620 PF00356 Bacterial regulatory proteins, lacI family YPN_RS12625 PF00872 Transposase, Mutator family YPN_RS12630 PF01306 LacY proton/sugar symporter YPN_RS12635 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPN_RS12635 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPN_RS12645 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPN_RS12645 PF01648 4'-phosphopantetheinyl transferase superfamily YPN_RS12650 PF03480 Bacterial extracellular solute-binding protein, family 7 YPN_RS12660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPN_RS12665 PF00196 Bacterial regulatory proteins, luxR family YPN_RS12665 PF00072 Response regulator receiver domain YPN_RS12675 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPN_RS12685 PF01522 Polysaccharide deacetylase YPN_RS12695 PF01554 MatE YPN_RS12700 PF00764 Arginosuccinate synthase YPN_RS12705 PF01070 FMN-dependent dehydrogenase YPN_RS12710 PF13378 Enolase C-terminal domain-like YPN_RS12710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPN_RS12715 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPN_RS12725 PF04134 Protein of unknown function, DUF393 YPN_RS12730 PF07690 Major Facilitator Superfamily YPN_RS12735 PF02369 Bacterial Ig-like domain (group 1) YPN_RS12735 PF11924 Inverse autotransporter, beta-domain YPN_RS12735 PF09134 Invasin, domain 3 YPN_RS12740 PF00872 Transposase, Mutator family YPN_RS12745 PF04363 Protein of unknown function (DUF496) YPN_RS12755 PF08411 Exonuclease C-terminal YPN_RS12755 PF00929 Exonuclease YPN_RS12760 PF13520 Amino acid permease YPN_RS12770 PF00465 Iron-containing alcohol dehydrogenase YPN_RS12775 PF00005 ABC transporter YPN_RS12780 PF00005 ABC transporter YPN_RS12785 PF02653 Branched-chain amino acid transport system / permease component YPN_RS12795 PF01370 NAD dependent epimerase/dehydratase family YPN_RS12800 PF01634 ATP phosphoribosyltransferase YPN_RS12800 PF08029 HisG, C-terminal domain YPN_RS12805 PF00815 Histidinol dehydrogenase YPN_RS12810 PF00155 Aminotransferase class I and II YPN_RS12815 PF00475 Imidazoleglycerol-phosphate dehydratase YPN_RS12820 PF00117 Glutamine amidotransferase class-I YPN_RS12825 PF00977 Histidine biosynthesis protein YPN_RS12830 PF00977 Histidine biosynthesis protein YPN_RS12835 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPN_RS12835 PF01502 Phosphoribosyl-AMP cyclohydrolase YPN_RS12840 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPN_RS12840 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPN_RS12845 PF00483 Nucleotidyl transferase YPN_RS12850 PF00483 Nucleotidyl transferase YPN_RS12855 PF04183 IucA / IucC family YPN_RS12855 PF06276 Ferric iron reductase FhuF-like transporter YPN_RS12860 PF00593 TonB dependent receptor YPN_RS12860 PF07715 TonB-dependent Receptor Plug Domain YPN_RS12860 PF07660 Secretin and TonB N terminus short domain YPN_RS12865 PF01497 Periplasmic binding protein YPN_RS12870 PF01032 FecCD transport family YPN_RS12875 PF01032 FecCD transport family YPN_RS12880 PF00005 ABC transporter YPN_RS12885 PF06276 Ferric iron reductase FhuF-like transporter YPN_RS12885 PF04183 IucA / IucC family YPN_RS12895 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPN_RS12900 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPN_RS12905 PF11575 FhuF 2Fe-2S C-terminal domain YPN_RS12905 PF06276 Ferric iron reductase FhuF-like transporter YPN_RS12910 PF03741 Integral membrane protein TerC family YPN_RS12910 PF03471 Transporter associated domain YPN_RS12910 PF00571 CBS domain YPN_RS12915 PF05170 AsmA family YPN_RS12920 PF00692 dUTPase YPN_RS12925 PF00485 Phosphoribulokinase / Uridine kinase family YPN_RS12930 PF10609 NUBPL iron-transfer P-loop NTPase YPN_RS12935 PF09334 tRNA synthetases class I (M) YPN_RS12935 PF01588 Putative tRNA binding domain YPN_RS12940 PF01797 Transposase IS200 like YPN_RS12975 PF07690 Major Facilitator Superfamily YPN_RS12980 PF03788 LrgA family YPN_RS12985 PF04172 LrgB-like family YPN_RS12990 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPN_RS12990 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPN_RS12995 PF00390 Malic enzyme, N-terminal domain YPN_RS12995 PF03949 Malic enzyme, NAD binding domain YPN_RS13000 PF02698 DUF218 domain YPN_RS13005 PF02653 Branched-chain amino acid transport system / permease component YPN_RS13010 PF00005 ABC transporter YPN_RS13015 PF13407 Periplasmic binding protein domain YPN_RS13020 PF04235 Protein of unknown function (DUF418) YPN_RS13025 PF01227 GTP cyclohydrolase I YPN_RS13030 PF06779 Uncharacterised MFS-type transporter YbfB YPN_RS13035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS13035 PF03466 LysR substrate binding domain YPN_RS13040 PF00107 Zinc-binding dehydrogenase YPN_RS13040 PF08240 Alcohol dehydrogenase GroES-like domain YPN_RS13045 PF00756 Putative esterase YPN_RS13060 PF13533 Biotin-lipoyl like YPN_RS13065 PF00005 ABC transporter YPN_RS13075 PF03454 MoeA C-terminal region (domain IV) YPN_RS13075 PF03453 MoeA N-terminal region (domain I and II) YPN_RS13075 PF00994 Probable molybdopterin binding domain YPN_RS13080 PF00899 ThiF family YPN_RS13085 PF00872 Transposase, Mutator family YPN_RS13095 PF00005 ABC transporter YPN_RS13095 PF12848 ABC transporter YPN_RS13155 PF13592 Winged helix-turn helix YPN_RS13155 PF13358 DDE superfamily endonuclease YPN_RS13185 PF04717 Type VI secretion system, phage-baseplate injector YPN_RS13185 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPN_RS13185 PF13296 Putative type VI secretion system Rhs element Vgr YPN_RS13190 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS13190 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS13190 PF07724 AAA domain (Cdc48 subfamily) YPN_RS13190 PF17871 AAA lid domain YPN_RS13200 PF00691 OmpA family YPN_RS13200 PF05736 OprF membrane domain YPN_RS13215 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPN_RS13230 PF00698 Acyl transferase domain YPN_RS13235 PF00550 Phosphopantetheine attachment site YPN_RS13250 PF00378 Enoyl-CoA hydratase/isomerase YPN_RS13260 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPN_RS13260 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPN_RS13270 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_RS13270 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_RS13275 PF07977 FabA-like domain YPN_RS13290 PF01565 FAD binding domain YPN_RS13290 PF08031 Berberine and berberine like YPN_RS13310 PF13610 DDE domain YPN_RS13320 PF04358 DsrC like protein YPN_RS13325 PF00708 Acylphosphatase YPN_RS13330 PF17785 PUA-like domain YPN_RS13330 PF10672 S-adenosylmethionine-dependent methyltransferase YPN_RS13335 PF08755 Hemimethylated DNA-binding protein YccV like YPN_RS13340 PF13380 CoA binding domain YPN_RS13345 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPN_RS13350 PF02142 MGS-like domain YPN_RS13355 PF13361 UvrD-like helicase C-terminal domain YPN_RS13355 PF00580 UvrD/REP helicase N-terminal domain YPN_RS13355 PF12462 DNA helicase IV / RNA helicase N terminal YPN_RS13360 PF03733 Inner membrane component domain YPN_RS13365 PF12805 FUSC-like inner membrane protein yccS YPN_RS13370 PF04994 TfoX C-terminal domain YPN_RS13370 PF04993 TfoX N-terminal domain YPN_RS13375 PF03846 Cell division inhibitor SulA YPN_RS13380 PF01389 OmpA-like transmembrane domain YPN_RS13380 PF00691 OmpA family YPN_RS13390 PF01797 Transposase IS200 like YPN_RS13395 PF06303 MatP N-terminal domain YPN_RS13395 PF17414 MatP C-terminal ribbon-helix-helix domain YPN_RS13400 PF05362 Lon protease (S16) C-terminal proteolytic domain YPN_RS13400 PF13654 AAA domain YPN_RS13405 PF07977 FabA-like domain YPN_RS13415 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_RS13415 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_RS13420 PF02796 Helix-turn-helix domain of resolvase YPN_RS13420 PF00665 Integrase core domain YPN_RS13425 PF01695 IstB-like ATP binding protein YPN_RS13430 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_RS13430 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_RS13435 PF01797 Transposase IS200 like YPN_RS13445 PF04957 Ribosome modulation factor YPN_RS13455 PF03886 ABC-type transport auxiliary lipoprotein component YPN_RS13460 PF02470 MlaD protein YPN_RS13465 PF04403 Paraquat-inducible protein A YPN_RS13470 PF16326 ABC transporter C-terminal domain YPN_RS13470 PF12848 ABC transporter YPN_RS13470 PF00005 ABC transporter YPN_RS13475 PF02926 THUMP domain YPN_RS13475 PF10672 S-adenosylmethionine-dependent methyltransferase YPN_RS13475 PF01170 Putative RNA methylase family UPF0020 YPN_RS13480 PF03473 MOSC domain YPN_RS13480 PF03476 MOSC N-terminal beta barrel domain YPN_RS13480 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_RS13485 PF07126 Cell-division protein ZapC YPN_RS13490 PF01180 Dihydroorotate dehydrogenase YPN_RS13495 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPN_RS13495 PF01433 Peptidase family M1 domain YPN_RS13495 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPN_RS13500 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPN_RS13500 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPN_RS13505 PF00152 tRNA synthetases class II (D, K and N) YPN_RS13505 PF01336 OB-fold nucleic acid binding domain YPN_RS13510 PF00267 Gram-negative porin YPN_RS13515 PF00155 Aminotransferase class I and II YPN_RS13520 PF00753 Metallo-beta-lactamase superfamily YPN_RS13525 PF05951 Bacterial protein of unknown function (DUF882) YPN_RS13530 PF01471 Putative peptidoglycan binding domain YPN_RS13530 PF03734 L,D-transpeptidase catalytic domain YPN_RS13545 PF04310 MukB N-terminal YPN_RS13545 PF16330 MukB hinge domain YPN_RS13550 PF04288 MukE-like family YPN_RS13555 PF03882 MukF winged-helix domain YPN_RS13555 PF17193 MukF C-terminal domain YPN_RS13555 PF17192 MukF middle domain YPN_RS13560 PF13847 Methyltransferase domain YPN_RS13570 PF01636 Phosphotransferase enzyme family YPN_RS13575 PF02348 Cytidylyltransferase YPN_RS13580 PF03966 Trm112p-like protein YPN_RS13585 PF00313 'Cold-shock' DNA-binding domain YPN_RS13595 PF07063 Domain of unknown function (DUF1338) YPN_RS13600 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPN_RS13605 PF00664 ABC transporter transmembrane region YPN_RS13605 PF00005 ABC transporter YPN_RS13610 PF00753 Metallo-beta-lactamase superfamily YPN_RS13610 PF03772 Competence protein YPN_RS13615 PF00216 Bacterial DNA-binding protein YPN_RS13620 PF00575 S1 RNA binding domain YPN_RS13625 PF02224 Cytidylate kinase YPN_RS13630 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPN_RS13635 PF00266 Aminotransferase class-V YPN_RS13645 PF03895 YadA-like membrane anchor domain YPN_RS13645 PF05658 Head domain of trimeric autotransporter adhesin YPN_RS13645 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_RS13645 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS13645 PF03895 YadA-like membrane anchor domain YPN_RS13645 PF05658 Head domain of trimeric autotransporter adhesin YPN_RS13645 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS13645 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_RS13650 PF00710 Asparaginase, N-terminal YPN_RS13650 PF17763 Glutaminase/Asparaginase C-terminal domain YPN_RS13655 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPN_RS13655 PF18381 YcaO cyclodehydratase C-terminal domain YPN_RS13660 PF01226 Formate/nitrite transporter YPN_RS13665 PF02901 Pyruvate formate lyase-like YPN_RS13665 PF01228 Glycine radical YPN_RS13675 PF04055 Radical SAM superfamily YPN_RS13680 PF07690 Major Facilitator Superfamily YPN_RS13685 PF02796 Helix-turn-helix domain of resolvase YPN_RS13685 PF00665 Integrase core domain YPN_RS13690 PF01695 IstB-like ATP binding protein YPN_RS13695 PF07690 Major Facilitator Superfamily YPN_RS13700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPN_RS13700 PF02403 Seryl-tRNA synthetase N-terminal domain YPN_RS13705 PF12002 MgsA AAA+ ATPase C terminal YPN_RS13705 PF16193 AAA C-terminal domain YPN_RS13705 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS13710 PF03548 Outer membrane lipoprotein carrier protein LolA YPN_RS13715 PF01580 FtsK/SpoIIIE family YPN_RS13715 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPN_RS13715 PF17854 FtsK alpha domain YPN_RS13715 PF09397 Ftsk gamma domain YPN_RS13720 PF01037 Lrp/AsnC ligand binding domain YPN_RS13725 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS13735 PF00005 ABC transporter YPN_RS13735 PF00664 ABC transporter transmembrane region YPN_RS13740 PF00005 ABC transporter YPN_RS13740 PF00664 ABC transporter transmembrane region YPN_RS13745 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPN_RS13750 PF01176 Translation initiation factor 1A / IF-1 YPN_RS13760 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS13760 PF17871 AAA lid domain YPN_RS13760 PF07724 AAA domain (Cdc48 subfamily) YPN_RS13760 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS13760 PF02861 Clp amino terminal domain, pathogenicity island component YPN_RS13765 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPN_RS13770 PF00313 'Cold-shock' DNA-binding domain YPN_RS13775 PF12704 MacB-like periplasmic core domain YPN_RS13775 PF02687 FtsX-like permease family YPN_RS13775 PF00005 ABC transporter YPN_RS13780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS13785 PF04393 Protein of unknown function (DUF535) YPN_RS13790 PF11398 Protein of unknown function (DUF2813) YPN_RS13795 PF03956 Lysine exporter LysO YPN_RS13800 PF03063 Prismane/CO dehydrogenase family YPN_RS13805 PF00175 Oxidoreductase NAD-binding domain YPN_RS13805 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_RS13805 PF00970 Oxidoreductase FAD-binding domain YPN_RS13810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPN_RS13810 PF00205 Thiamine pyrophosphate enzyme, central domain YPN_RS13810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPN_RS13815 PF01212 Beta-eliminating lyase YPN_RS13820 PF11066 Protein of unknown function (DUF2867) YPN_RS13820 PF13460 NAD(P)H-binding YPN_RS13825 PF01370 NAD dependent epimerase/dehydratase family YPN_RS13830 PF12883 Protein of unknown function (DUF3828) YPN_RS13835 PF01817 Chorismate mutase type II YPN_RS13840 PF00005 ABC transporter YPN_RS13845 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS13855 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS13865 PF00892 EamA-like transporter family YPN_RS13870 PF10100 Staphylopine dehydrogenase YPN_RS13875 PF03059 Nicotianamine synthase protein YPN_RS13880 PF00005 ABC transporter YPN_RS13910 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS13915 PF05958 tRNA (Uracil-5-)-methyltransferase YPN_RS13920 PF10767 Protein of unknown function (DUF2593) YPN_RS13925 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS13930 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS13935 PF08402 TOBE domain YPN_RS13935 PF00005 ABC transporter YPN_RS13940 PF13416 Bacterial extracellular solute-binding protein YPN_RS13945 PF10722 Putative bacterial sensory transduction regulator YPN_RS13955 PF07214 Protein of unknown function (DUF1418) YPN_RS13960 PF00462 Glutaredoxin YPN_RS13965 PF06826 Predicted Permease Membrane Region YPN_RS13965 PF02080 TrkA-C domain YPN_RS13975 PF01569 PAP2 superfamily YPN_RS13980 PF01791 DeoC/LacD family aldolase YPN_RS13985 PF00455 DeoR C terminal sensor domain YPN_RS13985 PF08220 DeoR-like helix-turn-helix domain YPN_RS14000 PF00768 D-alanyl-D-alanine carboxypeptidase YPN_RS14000 PF07943 Penicillin-binding protein 5, C-terminal domain YPN_RS14005 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS14010 PF09383 NIL domain YPN_RS14010 PF00005 ABC transporter YPN_RS14015 PF03180 NLPA lipoprotein YPN_RS14030 PF13417 Glutathione S-transferase, N-terminal domain YPN_RS14030 PF00043 Glutathione S-transferase, C-terminal domain YPN_RS14035 PF00593 TonB dependent receptor YPN_RS14035 PF07715 TonB-dependent Receptor Plug Domain YPN_RS14040 PF00005 ABC transporter YPN_RS14045 PF01032 FecCD transport family YPN_RS14055 PF00324 Amino acid permease YPN_RS14060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS14060 PF03466 LysR substrate binding domain YPN_RS14065 PF03601 Conserved hypothetical protein 698 YPN_RS14070 PF01261 Xylose isomerase-like TIM barrel YPN_RS14075 PF13954 PapC N-terminal domain YPN_RS14075 PF13953 PapC C-terminal domain YPN_RS14075 PF00577 Outer membrane usher protein YPN_RS14080 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS14080 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS14090 PF17550 Family of unknown function YPN_RS14095 PF00486 Transcriptional regulatory protein, C terminal YPN_RS14100 PF02378 Phosphotransferase system, EIIC YPN_RS14100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_RS14105 PF00294 pfkB family carbohydrate kinase YPN_RS14110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_RS14110 PF00381 PTS HPr component phosphorylation site YPN_RS14115 PF00293 NUDIX domain YPN_RS14120 PF02653 Branched-chain amino acid transport system / permease component YPN_RS14125 PF00005 ABC transporter YPN_RS14135 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPN_RS14140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS14140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_RS14145 PF00171 Aldehyde dehydrogenase family YPN_RS14155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_RS14155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_RS14155 PF01842 ACT domain YPN_RS14165 PF03692 Putative zinc- or iron-chelating domain YPN_RS14170 PF03222 Tryptophan/tyrosine permease family YPN_RS14175 PF01132 Elongation factor P (EF-P) OB domain YPN_RS14175 PF08207 Elongation factor P (EF-P) KOW-like domain YPN_RS14175 PF09285 Elongation factor P, C-terminal YPN_RS14180 PF03786 D-mannonate dehydratase (UxuA) YPN_RS14185 PF01232 Mannitol dehydrogenase Rossmann domain YPN_RS14185 PF08125 Mannitol dehydrogenase C-terminal domain YPN_RS14190 PF00392 Bacterial regulatory proteins, gntR family YPN_RS14190 PF07729 FCD domain YPN_RS14200 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPN_RS14200 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPN_RS14205 PF01569 PAP2 superfamily YPN_RS14210 PF00877 NlpC/P60 family YPN_RS14215 PF12792 CSS motif domain associated with EAL YPN_RS14215 PF00563 EAL domain YPN_RS14220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_RS14225 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS14230 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS14230 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_RS14235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_RS14235 PF00005 ABC transporter YPN_RS14240 PF13989 YejG-like protein YPN_RS14245 PF07690 Major Facilitator Superfamily YPN_RS14250 PF01479 S4 domain YPN_RS14250 PF00849 RNA pseudouridylate synthase YPN_RS14255 PF00271 Helicase conserved C-terminal domain YPN_RS14255 PF04851 Type III restriction enzyme, res subunit YPN_RS14260 PF01386 Ribosomal L25p family YPN_RS14265 PF01797 Transposase IS200 like YPN_RS14270 PF04245 37-kD nucleoid-associated bacterial protein YPN_RS14275 PF07208 Protein of unknown function (DUF1414) YPN_RS14280 PF00884 Sulfatase YPN_RS14280 PF11893 Domain of unknown function (DUF3413) YPN_RS14290 PF05638 Type VI secretion system effector, Hcp YPN_RS14310 PF00232 Glycosyl hydrolase family 1 YPN_RS14315 PF01418 Helix-turn-helix domain, rpiR family YPN_RS14315 PF01380 SIS domain YPN_RS14320 PF07484 Phage Tail Collar Domain YPN_RS14335 PF04865 Baseplate J-like protein YPN_RS14375 PF17482 Phage tail sheath C-terminal domain YPN_RS14375 PF04984 Phage tail sheath protein subtilisin-like domain YPN_RS14395 PF01261 Xylose isomerase-like TIM barrel YPN_RS14400 PF00455 DeoR C terminal sensor domain YPN_RS14400 PF08220 DeoR-like helix-turn-helix domain YPN_RS14410 PF07005 Sugar-binding N-terminal domain YPN_RS14410 PF17042 Nucleotide-binding C-terminal domain YPN_RS14415 PF06530 Phage antitermination protein Q YPN_RS14420 PF01381 Helix-turn-helix YPN_RS14420 PF00717 Peptidase S24-like YPN_RS14425 PF06183 DinI-like family YPN_RS14430 PF01278 Omptin family YPN_RS14435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_RS14435 PF00672 HAMP domain YPN_RS14435 PF02743 Cache domain YPN_RS14440 PF12706 Beta-lactamase superfamily domain YPN_RS14455 PF00144 Beta-lactamase YPN_RS14475 PF00267 Gram-negative porin YPN_RS14485 PF07690 Major Facilitator Superfamily YPN_RS14490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS14490 PF01627 Hpt domain YPN_RS14490 PF16359 RcsD-ABL domain YPN_RS14495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS14495 PF16359 RcsD-ABL domain YPN_RS14495 PF01627 Hpt domain YPN_RS14500 PF00196 Bacterial regulatory proteins, luxR family YPN_RS14500 PF00072 Response regulator receiver domain YPN_RS14505 PF00072 Response regulator receiver domain YPN_RS14505 PF09456 RcsC Alpha-Beta-Loop (ABL) YPN_RS14505 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS14505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS14515 PF03989 DNA gyrase C-terminal domain, beta-propeller YPN_RS14515 PF00521 DNA gyrase/topoisomerase IV, subunit A YPN_RS14525 PF03477 ATP cone domain YPN_RS14525 PF00317 Ribonucleotide reductase, all-alpha domain YPN_RS14525 PF02867 Ribonucleotide reductase, barrel domain YPN_RS14530 PF00268 Ribonucleotide reductase, small chain YPN_RS14535 PF00111 2Fe-2S iron-sulfur cluster binding domain YPN_RS14540 PF03974 Ecotin YPN_RS14545 PF00994 Probable molybdopterin binding domain YPN_RS14550 PF03222 Tryptophan/tyrosine permease family YPN_RS14555 PF07437 YfaZ precursor YPN_RS14560 PF06628 Catalase-related immune-responsive YPN_RS14560 PF00199 Catalase YPN_RS14565 PF06733 DEAD_2 YPN_RS14565 PF13307 Helicase C-terminal domain YPN_RS14570 PF00267 Gram-negative porin YPN_RS14575 PF00892 EamA-like transporter family YPN_RS14585 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPN_RS14585 PF01276 Orn/Lys/Arg decarboxylase, major domain YPN_RS14585 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPN_RS14590 PF13520 Amino acid permease YPN_RS14595 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS14600 PF00005 ABC transporter YPN_RS14605 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS14610 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPN_RS14615 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPN_RS14620 PF00581 Rhodanese-like domain YPN_RS14635 PF00005 ABC transporter YPN_RS14640 PF00005 ABC transporter YPN_RS14645 PF02653 Branched-chain amino acid transport system / permease component YPN_RS14650 PF02653 Branched-chain amino acid transport system / permease component YPN_RS14655 PF00158 Sigma-54 interaction domain YPN_RS14655 PF02954 Bacterial regulatory protein, Fis family YPN_RS14655 PF13188 PAS domain YPN_RS14660 PF07308 Protein of unknown function (DUF1456) YPN_RS14665 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS14670 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS14680 PF00005 ABC transporter YPN_RS14685 PF04226 Transglycosylase associated protein YPN_RS14695 PF01844 HNH endonuclease YPN_RS14700 PF01928 CYTH domain YPN_RS14705 PF01565 FAD binding domain YPN_RS14705 PF09330 D-lactate dehydrogenase, membrane binding YPN_RS14710 PF00768 D-alanyl-D-alanine carboxypeptidase YPN_RS14720 PF01207 Dihydrouridine synthase (Dus) YPN_RS14740 PF00270 DEAD/DEAH box helicase YPN_RS14740 PF00271 Helicase conserved C-terminal domain YPN_RS14745 PF01548 Transposase YPN_RS14745 PF02371 Transposase IS116/IS110/IS902 family YPN_RS14750 PF00872 Transposase, Mutator family YPN_RS14775 PF13358 DDE superfamily endonuclease YPN_RS14775 PF13592 Winged helix-turn helix YPN_RS14780 PF13592 Winged helix-turn helix YPN_RS14780 PF13358 DDE superfamily endonuclease YPN_RS14785 PF00271 Helicase conserved C-terminal domain YPN_RS14785 PF00270 DEAD/DEAH box helicase YPN_RS14790 PF00440 Bacterial regulatory proteins, tetR family YPN_RS14790 PF09209 Tetracyclin repressor-like, C-terminal domain YPN_RS14795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS14800 PF00005 ABC transporter YPN_RS14825 PF03466 LysR substrate binding domain YPN_RS14825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS14830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPN_RS14835 PF00158 Sigma-54 interaction domain YPN_RS14835 PF00072 Response regulator receiver domain YPN_RS14835 PF02954 Bacterial regulatory protein, Fis family YPN_RS14840 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS14845 PF13801 Heavy-metal resistance YPN_RS14850 PF03825 Nucleoside H+ symporter YPN_RS14860 PF03825 Nucleoside H+ symporter YPN_RS14865 PF01048 Phosphorylase superfamily YPN_RS14875 PF03466 LysR substrate binding domain YPN_RS14875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS14880 PF02028 BCCT, betaine/carnitine/choline family transporter YPN_RS14885 PF00440 Bacterial regulatory proteins, tetR family YPN_RS14885 PF13977 BetI-type transcriptional repressor, C-terminal YPN_RS14890 PF00171 Aldehyde dehydrogenase family YPN_RS14895 PF05199 GMC oxidoreductase YPN_RS14895 PF00732 GMC oxidoreductase YPN_RS14900 PF01797 Transposase IS200 like YPN_RS14910 PF01027 Inhibitor of apoptosis-promoting Bax1 YPN_RS14915 PF02391 MoaE protein YPN_RS14920 PF02597 ThiS family YPN_RS14925 PF01967 MoaC family YPN_RS14930 PF06463 Molybdenum Cofactor Synthesis C YPN_RS14930 PF04055 Radical SAM superfamily YPN_RS14940 PF01933 Uncharacterised protein family UPF0052 YPN_RS14945 PF09905 DNA-binding protein VF530 YPN_RS14950 PF17757 UvrB interaction domain YPN_RS14950 PF12344 Ultra-violet resistance protein B YPN_RS14950 PF02151 UvrB/uvrC motif YPN_RS14950 PF04851 Type III restriction enzyme, res subunit YPN_RS14950 PF00271 Helicase conserved C-terminal domain YPN_RS14955 PF00005 ABC transporter YPN_RS14955 PF09383 NIL domain YPN_RS14965 PF08241 Methyltransferase domain YPN_RS14970 PF00155 Aminotransferase class I and II YPN_RS14975 PF04055 Radical SAM superfamily YPN_RS14975 PF06968 Biotin and Thiamin Synthesis associated domain YPN_RS14980 PF00202 Aminotransferase class-III YPN_RS14985 PF10282 Lactonase, 7-bladed beta-propeller YPN_RS14995 PF03459 TOBE domain YPN_RS14995 PF00005 ABC transporter YPN_RS15000 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS15010 PF10766 Multidrug efflux pump-associated protein AcrZ YPN_RS15015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS15015 PF03459 TOBE domain YPN_RS15020 PF00005 ABC transporter YPN_RS15035 PF16363 GDP-mannose 4,6 dehydratase YPN_RS15040 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPN_RS15040 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPN_RS15045 PF00288 GHMP kinases N terminal domain YPN_RS15045 PF10509 Galactokinase galactose-binding signature YPN_RS15045 PF08544 GHMP kinases C terminal YPN_RS15055 PF01263 Aldose 1-epimerase YPN_RS15065 PF00300 Histidine phosphatase superfamily (branch 1) YPN_RS15070 PF00793 DAHP synthetase I family YPN_RS15075 PF01545 Cation efflux family YPN_RS15080 PF04973 Nicotinamide mononucleotide transporter YPN_RS15085 PF02445 Quinolinate synthetase A protein YPN_RS15105 PF13174 Tetratricopeptide repeat YPN_RS15105 PF16331 TolA binding protein trimerisation YPN_RS15110 PF00691 OmpA family YPN_RS15115 PF07676 WD40-like Beta Propeller Repeat YPN_RS15115 PF04052 TolB amino-terminal domain YPN_RS15120 PF06519 TolA C-terminal YPN_RS15120 PF06519 TolA C-terminal YPN_RS15125 PF02472 Biopolymer transport protein ExbD/TolR YPN_RS15130 PF01618 MotA/TolQ/ExbB proton channel family YPN_RS15135 PF03061 Thioesterase superfamily YPN_RS15140 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPN_RS15145 PF08173 Membrane bound YbgT-like protein YPN_RS15150 PF02322 Cytochrome bd terminal oxidase subunit II YPN_RS15155 PF01654 Cytochrome bd terminal oxidase subunit I YPN_RS15160 PF02629 CoA binding domain YPN_RS15160 PF00549 CoA-ligase YPN_RS15165 PF00549 CoA-ligase YPN_RS15165 PF08442 ATP-grasp domain YPN_RS15170 PF00364 Biotin-requiring enzyme YPN_RS15170 PF02817 e3 binding domain YPN_RS15170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPN_RS15175 PF16078 2-oxoglutarate dehydrogenase N-terminus YPN_RS15175 PF00676 Dehydrogenase E1 component YPN_RS15175 PF16870 2-oxoglutarate dehydrogenase C-terminal YPN_RS15175 PF02779 Transketolase, pyrimidine binding domain YPN_RS15180 PF13085 2Fe-2S iron-sulfur cluster binding domain YPN_RS15185 PF02910 Fumarate reductase flavoprotein C-term YPN_RS15185 PF00890 FAD binding domain YPN_RS15190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPN_RS15195 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPN_RS15200 PF00285 Citrate synthase, C-terminal domain YPN_RS15205 PF01025 GrpE YPN_RS15210 PF01513 ATP-NAD kinase YPN_RS15215 PF02463 RecF/RecN/SMC N terminal domain YPN_RS15220 PF04355 SmpA / OmlA family YPN_RS15225 PF03658 RnfH family Ubiquitin YPN_RS15230 PF03364 Polyketide cyclase / dehydrase and lipid transport YPN_RS15235 PF01668 SmpB protein YPN_RS15250 PF13356 Arm DNA-binding domain YPN_RS15250 PF00589 Phage integrase family YPN_RS15310 PF05973 Phage derived protein Gp49-like (DUF891) YPN_RS15320 PF00665 Integrase core domain YPN_RS15320 PF02796 Helix-turn-helix domain of resolvase YPN_RS15325 PF01695 IstB-like ATP binding protein YPN_RS15340 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPN_RS15350 PF00929 Exonuclease YPN_RS15355 PF00075 RNase H YPN_RS15360 PF08241 Methyltransferase domain YPN_RS15365 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPN_RS15365 PF00753 Metallo-beta-lactamase superfamily YPN_RS15370 PF01464 Transglycosylase SLT domain YPN_RS15370 PF01476 LysM domain YPN_RS15375 PF03372 Endonuclease/Exonuclease/phosphatase family YPN_RS15385 PF00248 Aldo/keto reductase family YPN_RS15420 PF00005 ABC transporter YPN_RS15420 PF09383 NIL domain YPN_RS15425 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS15430 PF03180 NLPA lipoprotein YPN_RS15435 PF16358 RcsF lipoprotein YPN_RS15440 PF18389 TrmO C-terminal domain YPN_RS15440 PF01980 tRNA-methyltransferase O YPN_RS15445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPN_RS15445 PF03129 Anticodon binding domain YPN_RS15445 PF04073 Aminoacyl-tRNA editing domain YPN_RS15450 PF04170 NlpE N-terminal domain YPN_RS15450 PF17185 NlpE C-terminal OB domain YPN_RS15455 PF00472 RF-1 domain YPN_RS15460 PF07152 YaeQ protein YPN_RS15465 PF06786 Uncharacterised protein family (UPF0253) YPN_RS15470 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPN_RS15475 PF00034 Cytochrome c YPN_RS15480 PF11734 TilS substrate C-terminal domain YPN_RS15480 PF01171 PP-loop family YPN_RS15480 PF09179 TilS substrate binding domain YPN_RS15485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPN_RS15490 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPN_RS15495 PF01336 OB-fold nucleic acid binding domain YPN_RS15495 PF14579 Helix-hairpin-helix motif YPN_RS15495 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPN_RS15495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPN_RS15495 PF02811 PHP domain YPN_RS15500 PF01351 Ribonuclease HII YPN_RS15505 PF02684 Lipid-A-disaccharide synthetase YPN_RS15510 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPN_RS15510 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_RS15515 PF07977 FabA-like domain YPN_RS15520 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPN_RS15520 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_RS15525 PF03938 Outer membrane protein (OmpH-like) YPN_RS15530 PF07244 Surface antigen variable number repeat YPN_RS15530 PF01103 Surface antigen YPN_RS15535 PF02163 Peptidase family M50 YPN_RS15535 PF17820 PDZ domain YPN_RS15545 PF01255 Putative undecaprenyl diphosphate synthase YPN_RS15550 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPN_RS15550 PF13288 DXP reductoisomerase C-terminal domain YPN_RS15550 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPN_RS15555 PF01765 Ribosome recycling factor YPN_RS15560 PF00696 Amino acid kinase family YPN_RS15565 PF00889 Elongation factor TS YPN_RS15570 PF00318 Ribosomal protein S2 YPN_RS15575 PF00557 Metallopeptidase family M24 YPN_RS15580 PF01966 HD domain YPN_RS15580 PF01842 ACT domain YPN_RS15580 PF08335 GlnD PII-uridylyltransferase YPN_RS15580 PF01909 Nucleotidyltransferase domain YPN_RS15585 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_RS15585 PF14602 Hexapeptide repeat of succinyl-transferase YPN_RS15585 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPN_RS15595 PF11944 Protein of unknown function (DUF3461) YPN_RS15600 PF00258 Flavodoxin YPN_RS15605 PF00849 RNA pseudouridylate synthase YPN_RS15610 PF04287 tRNA pseudouridine synthase C YPN_RS15615 PF01797 Transposase IS200 like YPN_RS15620 PF07348 Syd protein (SUKH-2) YPN_RS15625 PF14489 QueF-like protein YPN_RS15625 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPN_RS15630 PF11892 Domain of unknown function (DUF3412) YPN_RS15630 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPN_RS15630 PF03641 Possible lysine decarboxylase YPN_RS15635 PF01367 5'-3' exonuclease, C-terminal SAM fold YPN_RS15635 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPN_RS15640 PF01728 FtsJ-like methyltransferase YPN_RS15640 PF18125 RlmM ferredoxin-like domain YPN_RS15645 PF04241 Protein of unknown function (DUF423) YPN_RS15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS15650 PF03466 LysR substrate binding domain YPN_RS15655 PF00266 Aminotransferase class-V YPN_RS15660 PF02657 Fe-S metabolism associated domain YPN_RS15665 PF00899 ThiF family YPN_RS15670 PF03562 MltA specific insert domain YPN_RS15670 PF06725 3D domain YPN_RS15685 PF11741 AMIN domain YPN_RS15685 PF01520 N-acetylmuramoyl-L-alanine amidase YPN_RS15690 PF00696 Amino acid kinase family YPN_RS15690 PF00583 Acetyltransferase (GNAT) family YPN_RS15695 PF13538 UvrD-like helicase C-terminal domain YPN_RS15700 PF12705 PD-(D/E)XK nuclease superfamily YPN_RS15700 PF00580 UvrD/REP helicase N-terminal domain YPN_RS15700 PF13361 UvrD-like helicase C-terminal domain YPN_RS15705 PF00675 Insulinase (Peptidase family M16) YPN_RS15705 PF05193 Peptidase M16 inactive domain YPN_RS15705 PF16187 Middle or third domain of peptidase_M16 YPN_RS15710 PF17946 RecC C-terminal domain YPN_RS15740 PF00303 Thymidylate synthase YPN_RS15745 PF01790 Prolipoprotein diacylglyceryl transferase YPN_RS15750 PF02896 PEP-utilising enzyme, TIM barrel domain YPN_RS15750 PF01590 GAF domain YPN_RS15750 PF00391 PEP-utilising enzyme, mobile domain YPN_RS15750 PF05524 PEP-utilising enzyme, N-terminal YPN_RS15755 PF00293 NUDIX domain YPN_RS15770 PF02976 DNA mismatch repair enzyme MutH YPN_RS15775 PF00248 Aldo/keto reductase family YPN_RS15790 PF07690 Major Facilitator Superfamily YPN_RS15795 PF00501 AMP-binding enzyme YPN_RS15795 PF13193 AMP-binding enzyme C-terminal domain YPN_RS15795 PF01553 Acyltransferase YPN_RS15800 PF13193 AMP-binding enzyme C-terminal domain YPN_RS15800 PF00501 AMP-binding enzyme YPN_RS15800 PF01553 Acyltransferase YPN_RS15805 PF01568 Molydopterin dinucleotide binding domain YPN_RS15805 PF00384 Molybdopterin oxidoreductase YPN_RS15810 PF00356 Bacterial regulatory proteins, lacI family YPN_RS15815 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPN_RS15815 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPN_RS15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS15820 PF03466 LysR substrate binding domain YPN_RS15825 PF07690 Major Facilitator Superfamily YPN_RS15830 PF03466 LysR substrate binding domain YPN_RS15830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS15845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_RS15845 PF02203 Tar ligand binding domain homologue YPN_RS15845 PF00672 HAMP domain YPN_RS15865 PF06750 Bacterial Peptidase A24 N-terminal domain YPN_RS15865 PF01478 Type IV leader peptidase family YPN_RS15885 PF07963 Prokaryotic N-terminal methylation motif YPN_RS15885 PF11612 Type II secretion system (T2SS), protein J YPN_RS15900 PF07963 Prokaryotic N-terminal methylation motif YPN_RS15900 PF08334 Type II secretion system (T2SS), protein G YPN_RS15905 PF00482 Type II secretion system (T2SS), protein F YPN_RS15915 PF00437 Type II/IV secretion system protein YPN_RS15920 PF03958 Bacterial type II/III secretion system short domain YPN_RS15920 PF00263 Bacterial type II and III secretion system protein YPN_RS15935 PF00484 Carbonic anhydrase YPN_RS15960 PF09092 Lyase, N terminal YPN_RS15960 PF09093 Lyase, catalytic YPN_RS15960 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPN_RS15960 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPN_RS15965 PF01695 IstB-like ATP binding protein YPN_RS15970 PF00665 Integrase core domain YPN_RS15970 PF02796 Helix-turn-helix domain of resolvase YPN_RS15975 PF01797 Transposase IS200 like YPN_RS15980 PF00884 Sulfatase YPN_RS15985 PF00455 DeoR C terminal sensor domain YPN_RS15985 PF08220 DeoR-like helix-turn-helix domain YPN_RS15990 PF08013 Tagatose 6 phosphate kinase YPN_RS15995 PF01380 SIS domain YPN_RS16000 PF03830 PTS system sorbose subfamily IIB component YPN_RS16005 PF03609 PTS system sorbose-specific iic component YPN_RS16010 PF03613 PTS system mannose/fructose/sorbose family IID component YPN_RS16015 PF03610 PTS system fructose IIA component YPN_RS16020 PF01979 Amidohydrolase family YPN_RS16030 PF07470 Glycosyl Hydrolase Family 88 YPN_RS16035 PF04055 Radical SAM superfamily YPN_RS16035 PF13186 Iron-sulfur cluster-binding domain YPN_RS16040 PF00884 Sulfatase YPN_RS16050 PF01116 Fructose-bisphosphate aldolase class-II YPN_RS16065 PF00356 Bacterial regulatory proteins, lacI family YPN_RS16070 PF07690 Major Facilitator Superfamily YPN_RS16075 PF16338 Domain of unknown function (DUF4968) YPN_RS16075 PF13802 Galactose mutarotase-like YPN_RS16075 PF01055 Glycosyl hydrolases family 31 YPN_RS16075 PF17137 Domain of unknown function (DUF5110) YPN_RS16080 PF00356 Bacterial regulatory proteins, lacI family YPN_RS16085 PF02264 LamB porin YPN_RS16090 PF00367 phosphotransferase system, EIIB YPN_RS16090 PF02378 Phosphotransferase system, EIIC YPN_RS16095 PF08532 Beta-galactosidase trimerisation domain YPN_RS16095 PF02449 Beta-galactosidase YPN_RS16095 PF08533 Beta-galactosidase C-terminal domain YPN_RS16100 PF07745 Glycosyl hydrolase family 53 YPN_RS16105 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS16110 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS16115 PF13416 Bacterial extracellular solute-binding protein YPN_RS16120 PF17912 MalK OB fold domain YPN_RS16120 PF00005 ABC transporter YPN_RS16125 PF00005 ABC transporter YPN_RS16130 PF02653 Branched-chain amino acid transport system / permease component YPN_RS16135 PF13407 Periplasmic binding protein domain YPN_RS16145 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPN_RS16150 PF03551 Transcriptional regulator PadR-like family YPN_RS16245 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPN_RS16250 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPN_RS16275 PF00589 Phage integrase family YPN_RS16275 PF14659 Phage integrase, N-terminal SAM-like domain YPN_RS16275 PF13356 Arm DNA-binding domain YPN_RS16285 PF01336 OB-fold nucleic acid binding domain YPN_RS16285 PF00152 tRNA synthetases class II (D, K and N) YPN_RS16290 PF00472 RF-1 domain YPN_RS16290 PF03462 PCRF domain YPN_RS16295 PF01368 DHH family YPN_RS16295 PF02272 DHHA1 domain YPN_RS16295 PF17768 RecJ OB domain YPN_RS16300 PF10411 Disulfide bond isomerase protein N-terminus YPN_RS16300 PF13098 Thioredoxin-like domain YPN_RS16305 PF00589 Phage integrase family YPN_RS16305 PF02899 Phage integrase, N-terminal SAM-like domain YPN_RS16310 PF00258 Flavodoxin YPN_RS16315 PF06123 Inner membrane protein CreD YPN_RS16320 PF00672 HAMP domain YPN_RS16320 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS16320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS16325 PF00072 Response regulator receiver domain YPN_RS16325 PF00486 Transcriptional regulatory protein, C terminal YPN_RS16330 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPN_RS16335 PF03937 Flavinator of succinate dehydrogenase YPN_RS16340 PF01571 Aminomethyltransferase folate-binding domain YPN_RS16350 PF03006 Haemolysin-III related YPN_RS16360 PF13018 Extended Signal Peptide of Type V secretion system YPN_RS16360 PF03895 YadA-like membrane anchor domain YPN_RS16360 PF05662 Coiled stalk of trimeric autotransporter adhesin YPN_RS16360 PF05658 Head domain of trimeric autotransporter adhesin YPN_RS16375 PF02347 Glycine cleavage system P-protein YPN_RS16380 PF01597 Glycine cleavage H-protein YPN_RS16385 PF01571 Aminomethyltransferase folate-binding domain YPN_RS16385 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPN_RS16390 PF01494 FAD binding domain YPN_RS16395 PF01494 FAD binding domain YPN_RS16400 PF00557 Metallopeptidase family M24 YPN_RS16400 PF05195 Aminopeptidase P, N-terminal domain YPN_RS16405 PF03695 Uncharacterised protein family (UPF0149) YPN_RS16410 PF05164 Cell division protein ZapA YPN_RS16415 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPN_RS16420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_RS16420 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_RS16420 PF01842 ACT domain YPN_RS16425 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPN_RS16430 PF03466 LysR substrate binding domain YPN_RS16430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS16435 PF04402 Protein of unknown function (DUF541) YPN_RS16440 PF01810 LysE type translocator YPN_RS16445 PF00924 Mechanosensitive ion channel YPN_RS16445 PF05552 Conserved TM helix YPN_RS16455 PF01116 Fructose-bisphosphate aldolase class-II YPN_RS16460 PF00162 Phosphoglycerate kinase YPN_RS16465 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPN_RS16465 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPN_RS16475 PF02779 Transketolase, pyrimidine binding domain YPN_RS16475 PF02780 Transketolase, C-terminal domain YPN_RS16475 PF00456 Transketolase, thiamine diphosphate binding domain YPN_RS16480 PF01435 Peptidase family M48 YPN_RS16490 PF17944 Arginine decarboxylase C-terminal helical extension YPN_RS16490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPN_RS16490 PF17810 Arginine decarboxylase helical bundle domain YPN_RS16495 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPN_RS16495 PF02772 S-adenosylmethionine synthetase, central domain YPN_RS16495 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPN_RS16500 PF17283 SprT-like zinc ribbon domain YPN_RS16500 PF10263 SprT-like family YPN_RS16505 PF04231 Endonuclease I YPN_RS16510 PF04452 RNA methyltransferase YPN_RS16515 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPN_RS16515 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPN_RS16520 PF02622 Uncharacterized ACR, COG1678 YPN_RS16525 PF03652 Holliday junction resolvase YPN_RS16530 PF00795 Carbon-nitrogen hydrolase YPN_RS16535 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPN_RS16540 PF00437 Type II/IV secretion system protein YPN_RS16545 PF01168 Alanine racemase, N-terminal domain YPN_RS16550 PF03807 NADP oxidoreductase coenzyme F420-dependent YPN_RS16550 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPN_RS16555 PF02325 YGGT family YPN_RS16560 PF02594 Uncharacterised ACR, YggU family COG1872 YPN_RS16565 PF01725 Ham1 family YPN_RS16570 PF04055 Radical SAM superfamily YPN_RS16570 PF06969 HemN C-terminal domain YPN_RS16575 PF16671 Actin cross-linking domain YPN_RS16575 PF12146 Serine aminopeptidase, S33 YPN_RS16575 PF11647 Membrane Localization Domain YPN_RS16575 PF11713 Peptidase C80 family YPN_RS16575 PF07634 RtxA repeat YPN_RS16580 PF11101 Protein of unknown function (DUF2884) YPN_RS16585 PF11101 Protein of unknown function (DUF2884) YPN_RS16590 PF04960 Glutaminase YPN_RS16595 PF04320 Protein with unknown function (DUF469) YPN_RS16600 PF02390 Putative methyltransferase YPN_RS16605 PF14815 NUDIX domain YPN_RS16605 PF00730 HhH-GPD superfamily base excision DNA repair protein YPN_RS16605 PF10576 Iron-sulfur binding domain of endonuclease III YPN_RS16605 PF00633 Helix-hairpin-helix motif YPN_RS16610 PF04362 Bacterial Fe(2+) trafficking YPN_RS16615 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPN_RS16615 PF01464 Transglycosylase SLT domain YPN_RS16625 PF07715 TonB-dependent Receptor Plug Domain YPN_RS16630 PF02653 Branched-chain amino acid transport system / permease component YPN_RS16635 PF00005 ABC transporter YPN_RS16640 PF13407 Periplasmic binding protein domain YPN_RS16645 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPN_RS16645 PF01276 Orn/Lys/Arg decarboxylase, major domain YPN_RS16645 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPN_RS16655 PF02899 Phage integrase, N-terminal SAM-like domain YPN_RS16655 PF00589 Phage integrase family YPN_RS16665 PF03400 IS1 transposase YPN_RS16670 PF12759 InsA C-terminal domain YPN_RS16670 PF03811 InsA N-terminal domain YPN_RS16695 PF03811 InsA N-terminal domain YPN_RS16695 PF12759 InsA C-terminal domain YPN_RS16715 PF13296 Putative type VI secretion system Rhs element Vgr YPN_RS16715 PF04717 Type VI secretion system, phage-baseplate injector YPN_RS16715 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPN_RS16720 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS16720 PF17871 AAA lid domain YPN_RS16720 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS16720 PF07724 AAA domain (Cdc48 subfamily) YPN_RS16745 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPN_RS16765 PF12759 InsA C-terminal domain YPN_RS16765 PF03811 InsA N-terminal domain YPN_RS16775 PF02517 CPBP intramembrane metalloprotease YPN_RS16780 PF00765 Autoinducer synthase YPN_RS16785 PF00196 Bacterial regulatory proteins, luxR family YPN_RS16785 PF03472 Autoinducer binding domain YPN_RS16805 PF06276 Ferric iron reductase FhuF-like transporter YPN_RS16805 PF04183 IucA / IucC family YPN_RS16810 PF06276 Ferric iron reductase FhuF-like transporter YPN_RS16810 PF04183 IucA / IucC family YPN_RS16820 PF04183 IucA / IucC family YPN_RS16820 PF06276 Ferric iron reductase FhuF-like transporter YPN_RS16825 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPN_RS16830 PF00593 TonB dependent receptor YPN_RS16830 PF07715 TonB-dependent Receptor Plug Domain YPN_RS16845 PF13333 Integrase core domain YPN_RS16845 PF00665 Integrase core domain YPN_RS16845 PF13276 HTH-like domain YPN_RS16855 PF00356 Bacterial regulatory proteins, lacI family YPN_RS16860 PF00939 Sodium:sulfate symporter transmembrane region YPN_RS16875 PF05593 RHS Repeat YPN_RS16875 PF03527 RHS protein YPN_RS16885 PF04717 Type VI secretion system, phage-baseplate injector YPN_RS16890 PF12951 Passenger-associated-transport-repeat YPN_RS16895 PF12951 Passenger-associated-transport-repeat YPN_RS16905 PF02447 GntP family permease YPN_RS16920 PF00005 ABC transporter YPN_RS16920 PF00664 ABC transporter transmembrane region YPN_RS16925 PF04954 Siderophore-interacting protein YPN_RS16925 PF08021 Siderophore-interacting FAD-binding domain YPN_RS16925 PF00005 ABC transporter YPN_RS16925 PF00664 ABC transporter transmembrane region YPN_RS16935 PF00975 Thioesterase domain YPN_RS16950 PF00501 AMP-binding enzyme YPN_RS16950 PF00668 Condensation domain YPN_RS16950 PF08242 Methyltransferase domain YPN_RS16950 PF00550 Phosphopantetheine attachment site YPN_RS16955 PF00501 AMP-binding enzyme YPN_RS16955 PF00668 Condensation domain YPN_RS16955 PF13193 AMP-binding enzyme C-terminal domain YPN_RS16960 PF00550 Phosphopantetheine attachment site YPN_RS16960 PF00668 Condensation domain YPN_RS16960 PF08242 Methyltransferase domain YPN_RS16960 PF00501 AMP-binding enzyme YPN_RS16965 PF01695 IstB-like ATP binding protein YPN_RS16970 PF00665 Integrase core domain YPN_RS16970 PF02796 Helix-turn-helix domain of resolvase YPN_RS16975 PF00202 Aminotransferase class-III YPN_RS16975 PF00501 AMP-binding enzyme YPN_RS16975 PF13193 AMP-binding enzyme C-terminal domain YPN_RS16975 PF00550 Phosphopantetheine attachment site YPN_RS16975 PF16197 Ketoacyl-synthetase C-terminal extension YPN_RS16975 PF00109 Beta-ketoacyl synthase, N-terminal domain YPN_RS16975 PF02801 Beta-ketoacyl synthase, C-terminal domain YPN_RS16975 PF00668 Condensation domain YPN_RS16980 PF00593 TonB dependent receptor YPN_RS16980 PF07715 TonB-dependent Receptor Plug Domain YPN_RS16985 PF07687 Peptidase dimerisation domain YPN_RS16985 PF01546 Peptidase family M20/M25/M40 YPN_RS16990 PF03806 AbgT putative transporter family YPN_RS16995 PF14496 C-terminal novel E3 ligase, LRR-interacting YPN_RS16995 PF12468 Type III secretion system leucine rich repeat protein YPN_RS17000 PF14496 C-terminal novel E3 ligase, LRR-interacting YPN_RS17000 PF12468 Type III secretion system leucine rich repeat protein YPN_RS17000 PF14496 C-terminal novel E3 ligase, LRR-interacting YPN_RS17000 PF12468 Type III secretion system leucine rich repeat protein YPN_RS17005 PF14496 C-terminal novel E3 ligase, LRR-interacting YPN_RS17005 PF12468 Type III secretion system leucine rich repeat protein YPN_RS17010 PF03797 Autotransporter beta-domain YPN_RS17020 PF07906 ShET2 enterotoxin, N-terminal region YPN_RS17025 PF00873 AcrB/AcrD/AcrF family YPN_RS17030 PF00529 HlyD membrane-fusion protein of T1SS YPN_RS17030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS17040 PF08448 PAS fold YPN_RS17040 PF08447 PAS fold YPN_RS17040 PF00990 Diguanylate cyclase, GGDEF domain YPN_RS17040 PF00563 EAL domain YPN_RS17045 PF13276 HTH-like domain YPN_RS17045 PF13333 Integrase core domain YPN_RS17045 PF00665 Integrase core domain YPN_RS17055 PF00312 Ribosomal protein S15 YPN_RS17060 PF09157 Pseudouridine synthase II TruB, C-terminal YPN_RS17060 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPN_RS17060 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPN_RS17065 PF02033 Ribosome-binding factor A YPN_RS17070 PF11987 Translation-initiation factor 2 YPN_RS17070 PF08364 Bacterial translation initiation factor IF-2 associated region YPN_RS17070 PF00009 Elongation factor Tu GTP binding domain YPN_RS17070 PF04760 Translation initiation factor IF-2, N-terminal region YPN_RS17070 PF03144 Elongation factor Tu domain 2 YPN_RS17075 PF00575 S1 RNA binding domain YPN_RS17075 PF13184 NusA-like KH domain YPN_RS17075 PF08529 NusA N-terminal domain YPN_RS17080 PF02576 RimP N-terminal domain YPN_RS17080 PF17384 RimP C-terminal SH3 domain YPN_RS17095 PF03840 Preprotein translocase SecG subunit YPN_RS17100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPN_RS17100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPN_RS17100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPN_RS17100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPN_RS17105 PF00809 Pterin binding enzyme YPN_RS17110 PF17862 AAA+ lid domain YPN_RS17110 PF06480 FtsH Extracellular YPN_RS17110 PF01434 Peptidase family M41 YPN_RS17110 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS17115 PF01728 FtsJ-like methyltransferase YPN_RS17120 PF01985 CRS1 / YhbY (CRM) domain YPN_RS17125 PF03449 Transcription elongation factor, N-terminal YPN_RS17125 PF01272 Transcription elongation factor, GreA/GreB, C-term YPN_RS17130 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPN_RS17135 PF00486 Transcriptional regulatory protein, C terminal YPN_RS17135 PF00072 Response regulator receiver domain YPN_RS17140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS17140 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS17140 PF00672 HAMP domain YPN_RS17145 PF01018 GTP1/OBG YPN_RS17145 PF01926 50S ribosome-binding GTPase YPN_RS17150 PF00892 EamA-like transporter family YPN_RS17155 PF01016 Ribosomal L27 protein YPN_RS17160 PF00829 Ribosomal prokaryotic L21 protein YPN_RS17165 PF00348 Polyprenyl synthetase YPN_RS17175 PF13693 Winged helix-turn-helix DNA-binding YPN_RS17180 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPN_RS17180 PF00056 lactate/malate dehydrogenase, NAD binding domain YPN_RS17185 PF01316 Arginine repressor, DNA binding domain YPN_RS17185 PF02863 Arginine repressor, C-terminal domain YPN_RS17200 PF01225 Mur ligase family, catalytic domain YPN_RS17200 PF02875 Mur ligase family, glutamate ligase domain YPN_RS17200 PF08245 Mur ligase middle domain YPN_RS17205 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPN_RS17210 PF00719 Inorganic pyrophosphatase YPN_RS17215 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPN_RS17220 PF04357 TamB, inner membrane protein subunit of TAM complex YPN_RS17225 PF07244 Surface antigen variable number repeat YPN_RS17225 PF17243 POTRA domain TamA domain 1 YPN_RS17225 PF01103 Surface antigen YPN_RS17230 PF01625 Peptide methionine sulfoxide reductase YPN_RS17235 PF01595 Cyclin M transmembrane N-terminal domain YPN_RS17235 PF00571 CBS domain YPN_RS17235 PF03471 Transporter associated domain YPN_RS17240 PF06526 Protein of unknown function (DUF1107) YPN_RS17245 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPN_RS17250 PF00459 Inositol monophosphatase family YPN_RS17255 PF02872 5'-nucleotidase, C-terminal domain YPN_RS17255 PF00149 Calcineurin-like phosphoesterase YPN_RS17260 PF04405 Domain of Unknown function (DUF542) YPN_RS17260 PF01814 Hemerythrin HHE cation binding domain YPN_RS17265 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPN_RS17265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_RS17270 PF04225 Opacity-associated protein A LysM-like domain YPN_RS17270 PF08525 Opacity-associated protein A N-terminal motif YPN_RS17280 PF01797 Transposase IS200 like YPN_RS17290 PF03948 Ribosomal protein L9, C-terminal domain YPN_RS17290 PF01281 Ribosomal protein L9, N-terminal domain YPN_RS17295 PF01084 Ribosomal protein S18 YPN_RS17300 PF00436 Single-strand binding protein family YPN_RS17305 PF01250 Ribosomal protein S6 YPN_RS17315 PF00326 Prolyl oligopeptidase family YPN_RS17320 PF02796 Helix-turn-helix domain of resolvase YPN_RS17320 PF00665 Integrase core domain YPN_RS17325 PF01695 IstB-like ATP binding protein YPN_RS17335 PF07338 Protein of unknown function (DUF1471) YPN_RS17340 PF18158 Adaptive response protein AidB N-terminal domain YPN_RS17340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPN_RS17340 PF02770 Acyl-CoA dehydrogenase, middle domain YPN_RS17345 PF00588 SpoU rRNA Methylase family YPN_RS17345 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPN_RS17350 PF17876 Cold shock domain YPN_RS17350 PF00575 S1 RNA binding domain YPN_RS17350 PF00773 RNB domain YPN_RS17350 PF08461 Ribonuclease R winged-helix domain YPN_RS17350 PF08206 Ribonuclease B OB domain YPN_RS17355 PF02082 Transcriptional regulator YPN_RS17360 PF00709 Adenylosuccinate synthetase YPN_RS17365 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPN_RS17370 PF01145 SPFH domain / Band 7 family YPN_RS17375 PF12221 Bacterial membrane protein N terminal YPN_RS17375 PF01145 SPFH domain / Band 7 family YPN_RS17380 PF01926 50S ribosome-binding GTPase YPN_RS17380 PF13167 GTP-binding GTPase N-terminal YPN_RS17380 PF16360 GTP-binding GTPase Middle Region YPN_RS17385 PF17209 Hfq protein YPN_RS17395 PF08676 MutL C terminal dimerisation domain YPN_RS17395 PF01119 DNA mismatch repair protein, C-terminal domain YPN_RS17400 PF01520 N-acetylmuramoyl-L-alanine amidase YPN_RS17405 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPN_RS17410 PF01256 Carbohydrate kinase YPN_RS17410 PF03853 YjeF-related protein N-terminus YPN_RS17415 PF08331 Domain of unknown function (DUF1730) YPN_RS17430 PF00929 Exonuclease YPN_RS17440 PF03193 RsgA GTPase YPN_RS17445 PF02666 Phosphatidylserine decarboxylase YPN_RS17450 PF12795 Mechanosensitive ion channel porin domain YPN_RS17450 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPN_RS17450 PF00924 Mechanosensitive ion channel YPN_RS17455 PF00152 tRNA synthetases class II (D, K and N) YPN_RS17465 PF00890 FAD binding domain YPN_RS17465 PF02910 Fumarate reductase flavoprotein C-term YPN_RS17470 PF13085 2Fe-2S iron-sulfur cluster binding domain YPN_RS17470 PF13183 4Fe-4S dicluster domain YPN_RS17475 PF02300 Fumarate reductase subunit C YPN_RS17480 PF02313 Fumarate reductase subunit D YPN_RS17485 PF00893 Small Multidrug Resistance protein YPN_RS17490 PF01132 Elongation factor P (EF-P) OB domain YPN_RS17490 PF09285 Elongation factor P, C-terminal YPN_RS17490 PF08207 Elongation factor P (EF-P) KOW-like domain YPN_RS17495 PF04055 Radical SAM superfamily YPN_RS17500 PF13698 Domain of unknown function (DUF4156) YPN_RS17505 PF00118 TCP-1/cpn60 chaperonin family YPN_RS17510 PF00166 Chaperonin 10 Kd subunit YPN_RS17515 PF04186 FxsA cytoplasmic membrane protein YPN_RS17520 PF00206 Lyase YPN_RS17520 PF10415 Fumarase C C-terminus YPN_RS17525 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPN_RS17530 PF03091 CutA1 divalent ion tolerance protein YPN_RS17535 PF02683 Cytochrome C biogenesis protein transmembrane region YPN_RS17535 PF11412 Disulphide bond corrector protein DsbC YPN_RS17540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_RS17540 PF00384 Molybdopterin oxidoreductase YPN_RS17540 PF01568 Molydopterin dinucleotide binding domain YPN_RS17545 PF13247 4Fe-4S dicluster domain YPN_RS17545 PF12800 4Fe-4S binding domain YPN_RS17550 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS17550 PF13247 4Fe-4S dicluster domain YPN_RS17550 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPN_RS17585 PF06379 L-rhamnose-proton symport protein (RhaT) YPN_RS17590 PF02311 AraC-like ligand binding domain YPN_RS17590 PF12833 Helix-turn-helix domain YPN_RS17595 PF02311 AraC-like ligand binding domain YPN_RS17595 PF12833 Helix-turn-helix domain YPN_RS17610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS17610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_RS17615 PF06134 L-rhamnose isomerase (RhaA) YPN_RS17620 PF00596 Class II Aldolase and Adducin N-terminal domain YPN_RS17625 PF00465 Iron-containing alcohol dehydrogenase YPN_RS17630 PF05336 L-rhamnose mutarotase YPN_RS17635 PF00436 Single-strand binding protein family YPN_RS17640 PF00005 ABC transporter YPN_RS17640 PF17760 UvrA interaction domain YPN_RS17640 PF17755 UvrA DNA-binding domain YPN_RS17645 PF04237 YjbR YPN_RS17650 PF00155 Aminotransferase class I and II YPN_RS17655 PF00842 Alanine racemase, C-terminal domain YPN_RS17655 PF01168 Alanine racemase, N-terminal domain YPN_RS17660 PF03796 DnaB-like helicase C terminal domain YPN_RS17660 PF00772 DnaB-like helicase N terminal domain YPN_RS17665 PF00107 Zinc-binding dehydrogenase YPN_RS17665 PF08240 Alcohol dehydrogenase GroES-like domain YPN_RS17670 PF09583 Phage shock protein G (Phageshock_PspG) YPN_RS17675 PF01207 Dihydrouridine synthase (Dus) YPN_RS17680 PF01475 Ferric uptake regulator family YPN_RS17685 PF00717 Peptidase S24-like YPN_RS17685 PF01726 LexA DNA binding domain YPN_RS17690 PF01219 Prokaryotic diacylglycerol kinase YPN_RS17695 PF01553 Acyltransferase YPN_RS17700 PF01040 UbiA prenyltransferase family YPN_RS17705 PF04345 Chorismate lyase YPN_RS17710 PF12951 Passenger-associated-transport-repeat YPN_RS17715 PF08031 Berberine and berberine like YPN_RS17715 PF01565 FAD binding domain YPN_RS17735 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS17740 PF00577 Outer membrane usher protein YPN_RS17740 PF13953 PapC C-terminal domain YPN_RS17740 PF13954 PapC N-terminal domain YPN_RS17750 PF02342 TerD domain YPN_RS17755 PF02342 TerD domain YPN_RS17760 PF03741 Integral membrane protein TerC family YPN_RS17765 PF05099 Tellurite resistance protein TerB YPN_RS17770 PF02342 TerD domain YPN_RS17775 PF02342 TerD domain YPN_RS17795 PF15608 PELOTA RNA binding domain YPN_RS17795 PF11202 Phosphoribosyl transferase (PRTase) YPN_RS17815 PF04055 Radical SAM superfamily YPN_RS17820 PF06228 Haem utilisation ChuX/HutX YPN_RS17825 PF13460 NAD(P)H-binding YPN_RS17830 PF07715 TonB-dependent Receptor Plug Domain YPN_RS17830 PF00593 TonB dependent receptor YPN_RS17835 PF05171 Haemin-degrading HemS.ChuX domain YPN_RS17840 PF01497 Periplasmic binding protein YPN_RS17845 PF01032 FecCD transport family YPN_RS17850 PF00005 ABC transporter YPN_RS17855 PF01053 Cys/Met metabolism PLP-dependent enzyme YPN_RS17860 PF03222 Tryptophan/tyrosine permease family YPN_RS17865 PF03466 LysR substrate binding domain YPN_RS17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS17870 PF01206 Sulfurtransferase TusA YPN_RS17875 PF04143 Sulphur transport YPN_RS17880 PF01312 FlhB HrpN YscU SpaS Family YPN_RS17885 PF01311 Bacterial export proteins, family 1 YPN_RS17890 PF01313 Bacterial export proteins, family 3 YPN_RS17895 PF00813 FliP family YPN_RS17900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPN_RS17915 PF18269 T3SS EscN ATPase C-terminal domain YPN_RS17915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_RS17940 PF01514 Secretory protein of YscJ/FliF family YPN_RS17960 PF14525 AraC-binding-like domain YPN_RS17960 PF12833 Helix-turn-helix domain YPN_RS17975 PF00263 Bacterial type II and III secretion system protein YPN_RS17975 PF03958 Bacterial type II/III secretion system short domain YPN_RS17980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPN_RS17980 PF00072 Response regulator receiver domain YPN_RS17980 PF01627 Hpt domain YPN_RS17980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS17980 PF00672 HAMP domain YPN_RS17980 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS17985 PF00196 Bacterial regulatory proteins, luxR family YPN_RS17985 PF00072 Response regulator receiver domain YPN_RS17990 PF00375 Sodium:dicarboxylate symporter family YPN_RS17995 PF16177 Acetyl-coenzyme A synthetase N-terminus YPN_RS17995 PF13193 AMP-binding enzyme C-terminal domain YPN_RS17995 PF00501 AMP-binding enzyme YPN_RS18000 PF04341 Protein of unknown function, DUF485 YPN_RS18005 PF00474 Sodium:solute symporter family YPN_RS18015 PF02796 Helix-turn-helix domain of resolvase YPN_RS18015 PF00665 Integrase core domain YPN_RS18020 PF01695 IstB-like ATP binding protein YPN_RS18025 PF13683 Integrase core domain YPN_RS18025 PF13276 HTH-like domain YPN_RS18030 PF01527 Transposase YPN_RS18060 PF00665 Integrase core domain YPN_RS18060 PF02796 Helix-turn-helix domain of resolvase YPN_RS18065 PF01695 IstB-like ATP binding protein YPN_RS18070 PF13409 Glutathione S-transferase, N-terminal domain YPN_RS18075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS18075 PF03466 LysR substrate binding domain YPN_RS18080 PF17954 Quercetinase C-terminal cupin domain YPN_RS18080 PF02678 Pirin YPN_RS18085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPN_RS18090 PF04348 LppC putative lipoprotein YPN_RS18095 PF02021 Uncharacterised protein family UPF0102 YPN_RS18100 PF13580 SIS domain YPN_RS18105 PF04972 BON domain YPN_RS18110 PF00912 Transglycosylase YPN_RS18125 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPN_RS18125 PF00989 PAS fold YPN_RS18125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS18125 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS18125 PF01627 Hpt domain YPN_RS18125 PF00072 Response regulator receiver domain YPN_RS18135 PF04055 Radical SAM superfamily YPN_RS18135 PF16199 Radical_SAM C-terminal domain YPN_RS18140 PF00310 Glutamine amidotransferases class-II YPN_RS18140 PF01493 GXGXG motif YPN_RS18140 PF04898 Glutamate synthase central domain YPN_RS18140 PF01645 Conserved region in glutamate synthase YPN_RS18145 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPN_RS18145 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS18155 PF04386 Stringent starvation protein B YPN_RS18160 PF02798 Glutathione S-transferase, N-terminal domain YPN_RS18160 PF00043 Glutathione S-transferase, C-terminal domain YPN_RS18170 PF00380 Ribosomal protein S9/S16 YPN_RS18175 PF00572 Ribosomal protein L13 YPN_RS18180 PF03969 AFG1-like ATPase YPN_RS18185 PF06295 Protein of unknown function (DUF1043) YPN_RS18190 PF13180 PDZ domain YPN_RS18190 PF00595 PDZ domain YPN_RS18195 PF01797 Transposase IS200 like YPN_RS18200 PF13180 PDZ domain YPN_RS18205 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPN_RS18210 PF01722 BolA-like protein YPN_RS18215 PF13466 STAS domain YPN_RS18220 PF05494 MlaC protein YPN_RS18225 PF02470 MlaD protein YPN_RS18230 PF02405 Permease MlaE YPN_RS18235 PF00005 ABC transporter YPN_RS18240 PF01699 Sodium/calcium exchanger protein YPN_RS18245 PF00571 CBS domain YPN_RS18245 PF01380 SIS domain YPN_RS18255 PF06835 Lipopolysaccharide-assembly, LptC-related YPN_RS18260 PF03968 OstA-like protein YPN_RS18265 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPN_RS18265 PF00005 ABC transporter YPN_RS18270 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPN_RS18270 PF04963 Sigma-54 factor, core binding domain YPN_RS18270 PF04552 Sigma-54, DNA binding domain YPN_RS18280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_RS18285 PF03668 P-loop ATPase protein family YPN_RS18290 PF00381 PTS HPr component phosphorylation site YPN_RS18295 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPN_RS18295 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPN_RS18300 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPN_RS18300 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPN_RS18305 PF01042 Endoribonuclease L-PSP YPN_RS18315 PF00356 Bacterial regulatory proteins, lacI family YPN_RS18320 PF00367 phosphotransferase system, EIIB YPN_RS18320 PF02378 Phosphotransferase system, EIIC YPN_RS18325 PF11941 Domain of unknown function (DUF3459) YPN_RS18325 PF00128 Alpha amylase, catalytic domain YPN_RS18330 PF01272 Transcription elongation factor, GreA/GreB, C-term YPN_RS18330 PF14760 Rnk N-terminus YPN_RS18335 PF07361 Cytochrome b562 YPN_RS18345 PF01523 Putative modulator of DNA gyrase YPN_RS18350 PF04751 Protein of unknown function (DUF615) YPN_RS18355 PF01337 Barstar (barnase inhibitor) YPN_RS18365 PF00171 Aldehyde dehydrogenase family YPN_RS18370 PF00171 Aldehyde dehydrogenase family YPN_RS18375 PF04632 Fusaric acid resistance protein family YPN_RS18380 PF13533 Biotin-lipoyl like YPN_RS18385 PF07869 Protein of unknown function (DUF1656) YPN_RS18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS18390 PF03466 LysR substrate binding domain YPN_RS18395 PF03466 LysR substrate binding domain YPN_RS18395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS18405 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPN_RS18405 PF18413 Neuraminidase-like domain YPN_RS18410 PF12255 Insecticide toxin TcdB middle/C-terminal region YPN_RS18410 PF03534 Salmonella virulence plasmid 65kDa B protein YPN_RS18410 PF12256 Insecticide toxin TcdB middle/N-terminal region YPN_RS18430 PF18807 Tripartite Tc toxins repeat YPN_RS18430 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPN_RS18435 PF18807 Tripartite Tc toxins repeat YPN_RS18435 PF14431 YwqJ-like deaminase YPN_RS18440 PF01523 Putative modulator of DNA gyrase YPN_RS18445 PF00795 Carbon-nitrogen hydrolase YPN_RS18450 PF13502 AsmA-like C-terminal region YPN_RS18450 PF13116 Protein of unknown function YPN_RS18455 PF00575 S1 RNA binding domain YPN_RS18455 PF10150 Ribonuclease E/G family YPN_RS18460 PF02545 Maf-like protein YPN_RS18465 PF04093 rod shape-determining protein MreD YPN_RS18470 PF04085 rod shape-determining protein MreC YPN_RS18480 PF00990 Diguanylate cyclase, GGDEF domain YPN_RS18480 PF17157 Gammaproteobacterial periplasmic sensor domain YPN_RS18480 PF00563 EAL domain YPN_RS18485 PF08240 Alcohol dehydrogenase GroES-like domain YPN_RS18485 PF00107 Zinc-binding dehydrogenase YPN_RS18490 PF00174 Oxidoreductase molybdopterin binding domain YPN_RS18495 PF01794 Ferric reductase like transmembrane component YPN_RS18500 PF01220 Dehydroquinase class II YPN_RS18505 PF00364 Biotin-requiring enzyme YPN_RS18510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPN_RS18510 PF02785 Biotin carboxylase C-terminal domain YPN_RS18510 PF00289 Biotin carboxylase, N-terminal domain YPN_RS18515 PF06196 Protein of unknown function (DUF997) YPN_RS18520 PF00474 Sodium:solute symporter family YPN_RS18530 PF01207 Dihydrouridine synthase (Dus) YPN_RS18535 PF02954 Bacterial regulatory protein, Fis family YPN_RS18550 PF07690 Major Facilitator Superfamily YPN_RS18555 PF02627 Carboxymuconolactone decarboxylase family YPN_RS18560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPN_RS18560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPN_RS18565 PF00753 Metallo-beta-lactamase superfamily YPN_RS18570 PF05433 Glycine zipper 2TM domain YPN_RS18580 PF00313 'Cold-shock' DNA-binding domain YPN_RS18585 PF00313 'Cold-shock' DNA-binding domain YPN_RS18590 PF01797 Transposase IS200 like YPN_RS18610 PF02798 Glutathione S-transferase, N-terminal domain YPN_RS18615 PF00571 CBS domain YPN_RS18615 PF01380 SIS domain YPN_RS18620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_RS18620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS18630 PF02653 Branched-chain amino acid transport system / permease component YPN_RS18635 PF00005 ABC transporter YPN_RS18645 PF03279 Bacterial lipid A biosynthesis acyltransferase YPN_RS18655 PF00999 Sodium/hydrogen exchanger family YPN_RS18660 PF00860 Permease family YPN_RS18665 PF04221 RelB antitoxin YPN_RS18670 PF00005 ABC transporter YPN_RS18675 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS18680 PF00296 Luciferase-like monooxygenase YPN_RS18685 PF09084 NMT1/THI5 like YPN_RS18690 PF03358 NADPH-dependent FMN reductase YPN_RS18695 PF01791 DeoC/LacD family aldolase YPN_RS18700 PF00294 pfkB family carbohydrate kinase YPN_RS18705 PF05025 RbsD / FucU transport protein family YPN_RS18710 PF12833 Helix-turn-helix domain YPN_RS18710 PF02311 AraC-like ligand binding domain YPN_RS18715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPN_RS18715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPN_RS18730 PF05593 RHS Repeat YPN_RS18730 PF03527 RHS protein YPN_RS18740 PF04717 Type VI secretion system, phage-baseplate injector YPN_RS18770 PF05593 RHS Repeat YPN_RS18770 PF03527 RHS protein YPN_RS18785 PF04717 Type VI secretion system, phage-baseplate injector YPN_RS18820 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS18820 PF17871 AAA lid domain YPN_RS18820 PF07724 AAA domain (Cdc48 subfamily) YPN_RS18820 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS18830 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPN_RS18850 PF05947 Type VI secretion system, TssF YPN_RS18860 PF00665 Integrase core domain YPN_RS18860 PF13276 HTH-like domain YPN_RS18860 PF13333 Integrase core domain YPN_RS18880 PF01266 FAD dependent oxidoreductase YPN_RS18880 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPN_RS18885 PF00343 Carbohydrate phosphorylase YPN_RS18890 PF08323 Starch synthase catalytic domain YPN_RS18890 PF00534 Glycosyl transferases group 1 YPN_RS18895 PF00483 Nucleotidyl transferase YPN_RS18900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPN_RS18900 PF00128 Alpha amylase, catalytic domain YPN_RS18900 PF18390 Glycogen debranching enzyme C-terminal domain YPN_RS18905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPN_RS18905 PF00128 Alpha amylase, catalytic domain YPN_RS18905 PF02806 Alpha amylase, C-terminal all-beta domain YPN_RS18910 PF06580 Histidine kinase YPN_RS18910 PF07694 5TMR of 5TMR-LYT YPN_RS18915 PF02369 Bacterial Ig-like domain (group 1) YPN_RS18915 PF11924 Inverse autotransporter, beta-domain YPN_RS18915 PF07979 Intimin C-type lectin domain YPN_RS18915 PF09134 Invasin, domain 3 YPN_RS18940 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPN_RS18940 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPN_RS18945 PF01914 MarC family integral membrane protein YPN_RS18965 PF01202 Shikimate kinase YPN_RS18970 PF02447 GntP family permease YPN_RS18975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPN_RS18975 PF00356 Bacterial regulatory proteins, lacI family YPN_RS18980 PF17954 Quercetinase C-terminal cupin domain YPN_RS18980 PF02678 Pirin YPN_RS18990 PF00072 Response regulator receiver domain YPN_RS18990 PF00486 Transcriptional regulatory protein, C terminal YPN_RS19000 PF01116 Fructose-bisphosphate aldolase class-II YPN_RS19010 PF13407 Periplasmic binding protein domain YPN_RS19015 PF02653 Branched-chain amino acid transport system / permease component YPN_RS19020 PF00005 ABC transporter YPN_RS19025 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS19025 PF08448 PAS fold YPN_RS19025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS19025 PF00072 Response regulator receiver domain YPN_RS19025 PF13188 PAS domain YPN_RS19035 PF01384 Phosphate transporter family YPN_RS19050 PF10625 Universal stress protein B (UspB) YPN_RS19055 PF00582 Universal stress protein family YPN_RS19060 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPN_RS19060 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPN_RS19065 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPN_RS19065 PF08548 Peptidase M10 serralysin C terminal YPN_RS19065 PF00413 Matrixin YPN_RS19070 PF04445 Putative SAM-dependent methyltransferase YPN_RS19075 PF01432 Peptidase family M3 YPN_RS19080 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPN_RS19085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPN_RS19085 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS19090 PF13556 PucR C-terminal helix-turn-helix domain YPN_RS19090 PF17853 GGDEF-like domain YPN_RS19090 PF05651 Putative sugar diacid recognition YPN_RS19095 PF02447 GntP family permease YPN_RS19100 PF02595 Glycerate kinase family YPN_RS19125 PF03631 Virulence factor BrkB YPN_RS19130 PF02611 CDP-diacylglycerol pyrophosphatase YPN_RS19135 PF05170 AsmA family YPN_RS19140 PF00563 EAL domain YPN_RS19145 PF01361 Tautomerase enzyme YPN_RS19150 PF00294 pfkB family carbohydrate kinase YPN_RS19155 PF05193 Peptidase M16 inactive domain YPN_RS19155 PF00675 Insulinase (Peptidase family M16) YPN_RS19160 PF00375 Sodium:dicarboxylate symporter family YPN_RS19170 PF06917 Periplasmic pectate lyase YPN_RS19175 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPN_RS19180 PF00672 HAMP domain YPN_RS19180 PF00990 Diguanylate cyclase, GGDEF domain YPN_RS19180 PF17154 Gammaproteobacterial periplasmic sensor domain YPN_RS19180 PF00563 EAL domain YPN_RS19185 PF01270 Glycosyl hydrolases family 8 YPN_RS19190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_RS19190 PF00005 ABC transporter YPN_RS19195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPN_RS19195 PF00005 ABC transporter YPN_RS19200 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS19200 PF12911 N-terminal TM domain of oligopeptide transport permease C YPN_RS19205 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS19210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPN_RS19220 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPN_RS19220 PF17287 POTRA domain YPN_RS19220 PF08479 POTRA domain, ShlB-type YPN_RS19225 PF04829 Pre-toxin domain with VENN motif YPN_RS19225 PF05860 haemagglutination activity domain YPN_RS19225 PF13332 Hemagglutinin repeat YPN_RS19225 PF05594 Haemagluttinin repeat YPN_RS19235 PF07690 Major Facilitator Superfamily YPN_RS19240 PF07730 Histidine kinase YPN_RS19240 PF05231 MASE1 YPN_RS19240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS19245 PF01695 IstB-like ATP binding protein YPN_RS19250 PF00665 Integrase core domain YPN_RS19250 PF02796 Helix-turn-helix domain of resolvase YPN_RS19255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS19255 PF07730 Histidine kinase YPN_RS19255 PF05231 MASE1 YPN_RS19260 PF00072 Response regulator receiver domain YPN_RS19260 PF00196 Bacterial regulatory proteins, luxR family YPN_RS19265 PF00884 Sulfatase YPN_RS19265 PF08019 Phosphoethanolamine transferase EptA/EptB YPN_RS19270 PF12146 Serine aminopeptidase, S33 YPN_RS19275 PF00324 Amino acid permease YPN_RS19280 PF00221 Aromatic amino acid lyase YPN_RS19285 PF17392 Urocanase C-terminal domain YPN_RS19285 PF01175 Urocanase Rossmann-like domain YPN_RS19285 PF17391 Urocanase N-terminal domain YPN_RS19290 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS19295 PF00156 Phosphoribosyl transferase domain YPN_RS19310 PF01497 Periplasmic binding protein YPN_RS19315 PF01032 FecCD transport family YPN_RS19320 PF01032 FecCD transport family YPN_RS19325 PF00005 ABC transporter YPN_RS19345 PF13737 Transposase DDE domain YPN_RS19350 PF13737 Transposase DDE domain YPN_RS19355 PF04606 Ogr/Delta-like zinc finger YPN_RS19365 PF13356 Arm DNA-binding domain YPN_RS19365 PF14659 Phage integrase, N-terminal SAM-like domain YPN_RS19365 PF00589 Phage integrase family YPN_RS19370 PF12833 Helix-turn-helix domain YPN_RS19375 PF02653 Branched-chain amino acid transport system / permease component YPN_RS19380 PF00005 ABC transporter YPN_RS19385 PF13407 Periplasmic binding protein domain YPN_RS19395 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS19395 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_RS19405 PF02753 Pili assembly chaperone PapD, C-terminal domain YPN_RS19405 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPN_RS19415 PF00419 Fimbrial protein YPN_RS19420 PF01757 Acyltransferase family YPN_RS19430 PF13276 HTH-like domain YPN_RS19430 PF00665 Integrase core domain YPN_RS19430 PF13333 Integrase core domain YPN_RS19435 PF07690 Major Facilitator Superfamily YPN_RS19460 PF01526 Tn3 transposase DDE domain YPN_RS19460 PF13700 Domain of unknown function (DUF4158) YPN_RS19465 PF03144 Elongation factor Tu domain 2 YPN_RS19465 PF09106 Elongation factor SelB, winged helix YPN_RS19465 PF00009 Elongation factor Tu GTP binding domain YPN_RS19465 PF09107 Elongation factor SelB, winged helix YPN_RS19470 PF03841 L-seryl-tRNA selenium transferase YPN_RS19470 PF12390 Selenocysteine synthase N terminal YPN_RS19475 PF04216 Protein involved in formate dehydrogenase formation YPN_RS19480 PF01292 Prokaryotic cytochrome b561 YPN_RS19485 PF09163 Formate dehydrogenase N, transmembrane YPN_RS19485 PF13247 4Fe-4S dicluster domain YPN_RS19490 PF00384 Molybdopterin oxidoreductase YPN_RS19490 PF01568 Molydopterin dinucleotide binding domain YPN_RS19490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_RS19495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPN_RS19495 PF01568 Molydopterin dinucleotide binding domain YPN_RS19495 PF00384 Molybdopterin oxidoreductase YPN_RS19500 PF02634 FdhD/NarQ family YPN_RS19505 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPN_RS19505 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPN_RS19510 PF00672 HAMP domain YPN_RS19510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPN_RS19510 PF02203 Tar ligand binding domain homologue YPN_RS19525 PF10928 Protein of unknown function (DUF2810) YPN_RS19530 PF05068 Mannitol repressor YPN_RS19535 PF08125 Mannitol dehydrogenase C-terminal domain YPN_RS19535 PF01232 Mannitol dehydrogenase Rossmann domain YPN_RS19540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPN_RS19540 PF02378 Phosphotransferase system, EIIC YPN_RS19540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPN_RS19545 PF11254 Protein of unknown function (DUF3053) YPN_RS19550 PF02092 Glycyl-tRNA synthetase beta subunit YPN_RS19550 PF05746 DALR anticodon binding domain YPN_RS19555 PF02091 Glycyl-tRNA synthetase alpha subunit YPN_RS19560 PF03352 Methyladenine glycosylase YPN_RS19570 PF13488 Glycine zipper YPN_RS19570 PF00691 OmpA family YPN_RS19580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPN_RS19580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPN_RS19585 PF00128 Alpha amylase, catalytic domain YPN_RS19595 PF00155 Aminotransferase class I and II YPN_RS19600 PF06826 Predicted Permease Membrane Region YPN_RS19600 PF02080 TrkA-C domain YPN_RS19605 PF00011 Hsp20/alpha crystallin family YPN_RS19610 PF00011 Hsp20/alpha crystallin family YPN_RS19615 PF07119 Protein of unknown function (DUF1375) YPN_RS19620 PF12566 Protein of unknown function (DUF3748) YPN_RS19620 PF07676 WD40-like Beta Propeller Repeat YPN_RS19625 PF07676 WD40-like Beta Propeller Repeat YPN_RS19625 PF12566 Protein of unknown function (DUF3748) YPN_RS19630 PF00291 Pyridoxal-phosphate dependent enzyme YPN_RS19630 PF13291 ACT domain YPN_RS19635 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPN_RS19645 PF13333 Integrase core domain YPN_RS19645 PF00665 Integrase core domain YPN_RS19645 PF13276 HTH-like domain YPN_RS19650 PF02219 Methylenetetrahydrofolate reductase YPN_RS19655 PF00742 Homoserine dehydrogenase YPN_RS19655 PF03447 Homoserine dehydrogenase, NAD binding domain YPN_RS19655 PF00696 Amino acid kinase family YPN_RS19665 PF01340 Met Apo-repressor, MetJ YPN_RS19675 PF05360 yiaA/B two helix domain YPN_RS19680 PF01197 Ribosomal protein L31 YPN_RS19685 PF17764 3′ DNA-binding domain (3′BD) YPN_RS19685 PF18074 Primosomal protein N C-terminal domain YPN_RS19685 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPN_RS19685 PF00271 Helicase conserved C-terminal domain YPN_RS19685 PF00270 DEAD/DEAH box helicase YPN_RS19695 PF00356 Bacterial regulatory proteins, lacI family YPN_RS19700 PF05036 Sporulation related domain YPN_RS19705 PF00227 Proteasome subunit YPN_RS19710 PF10431 C-terminal, D2-small domain, of ClpB protein YPN_RS19710 PF00004 ATPase family associated with various cellular activities (AAA) YPN_RS19710 PF07724 AAA domain (Cdc48 subfamily) YPN_RS19715 PF01040 UbiA prenyltransferase family YPN_RS19720 PF03737 Aldolase/RraA YPN_RS19740 PF00529 HlyD membrane-fusion protein of T1SS YPN_RS19740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPN_RS19745 PF03412 Peptidase C39 family YPN_RS19745 PF00005 ABC transporter YPN_RS19745 PF00664 ABC transporter transmembrane region YPN_RS19755 PF06005 Cell division protein ZapB YPN_RS19765 PF00230 Major intrinsic protein YPN_RS19770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPN_RS19770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPN_RS19775 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPN_RS19780 PF00970 Oxidoreductase FAD-binding domain YPN_RS19780 PF00175 Oxidoreductase NAD-binding domain YPN_RS19785 PF05656 Protein of unknown function (DUF805) YPN_RS19790 PF07305 Protein of unknown function (DUF1454) YPN_RS19795 PF00121 Triosephosphate isomerase YPN_RS19800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPN_RS19800 PF03466 LysR substrate binding domain YPN_RS19805 PF02585 GlcNAc-PI de-N-acetylase YPN_RS19810 PF03737 Aldolase/RraA YPN_RS19815 PF00939 Sodium:sulfate symporter transmembrane region YPN_RS19830 PF00365 Phosphofructokinase YPN_RS19835 PF16916 Dimerisation domain of Zinc Transporter YPN_RS19835 PF01545 Cation efflux family YPN_RS19840 PF04754 Putative transposase, YhgA-like YPN_RS19845 PF07813 LTXXQ motif family protein YPN_RS19850 PF00486 Transcriptional regulatory protein, C terminal YPN_RS19850 PF00072 Response regulator receiver domain YPN_RS19855 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS19855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS19855 PF00672 HAMP domain YPN_RS19855 PF16527 Two-component sensor protein CpxA, periplasmic domain YPN_RS19860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPN_RS19860 PF02805 Metal binding domain of Ada YPN_RS19860 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPN_RS19860 PF12833 Helix-turn-helix domain YPN_RS19865 PF00588 SpoU rRNA Methylase family YPN_RS19870 PF06426 Serine acetyltransferase, N-terminal YPN_RS19870 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_RS19880 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPN_RS19880 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPN_RS19885 PF02556 Preprotein translocase subunit SecB YPN_RS19890 PF00462 Glutaredoxin YPN_RS19895 PF00581 Rhodanese-like domain YPN_RS19900 PF01676 Metalloenzyme superfamily YPN_RS19900 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPN_RS19905 PF01551 Peptidase family M23 YPN_RS19915 PF00107 Zinc-binding dehydrogenase YPN_RS19915 PF08240 Alcohol dehydrogenase GroES-like domain YPN_RS19920 PF00155 Aminotransferase class I and II YPN_RS19925 PF01370 NAD dependent epimerase/dehydratase family YPN_RS19930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPN_RS19935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPN_RS19940 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPN_RS19945 PF00535 Glycosyl transferase family 2 YPN_RS19950 PF01467 Cytidylyltransferase-like YPN_RS19955 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPN_RS19955 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPN_RS19955 PF06827 Zinc finger found in FPG and IleRS YPN_RS19960 PF00471 Ribosomal protein L33 YPN_RS19965 PF00830 Ribosomal L28 family YPN_RS19970 PF04002 RadC-like JAB domain YPN_RS19975 PF04127 DNA / pantothenate metabolism flavoprotein YPN_RS19975 PF02441 Flavoprotein YPN_RS19980 PF00692 dUTPase YPN_RS19985 PF00440 Bacterial regulatory proteins, tetR family YPN_RS19990 PF00156 Phosphoribosyl transferase domain YPN_RS19995 PF01138 3' exoribonuclease family, domain 1 YPN_RS19995 PF03725 3' exoribonuclease family, domain 2 YPN_RS20000 PF08340 Domain of unknown function (DUF1732) YPN_RS20000 PF03755 YicC-like family, N-terminal region YPN_RS20005 PF03458 UPF0126 domain YPN_RS20010 PF01653 NAD-dependent DNA ligase adenylation domain YPN_RS20010 PF03120 NAD-dependent DNA ligase OB-fold domain YPN_RS20015 PF00625 Guanylate kinase YPN_RS20020 PF01192 RNA polymerase Rpb6 YPN_RS20025 PF13291 ACT domain YPN_RS20025 PF04607 Region found in RelA / SpoT proteins YPN_RS20025 PF02824 TGS domain YPN_RS20030 PF12105 SpoU, rRNA methylase, C-terminal YPN_RS20030 PF00588 SpoU rRNA Methylase family YPN_RS20035 PF17191 RecG wedge domain YPN_RS20035 PF00271 Helicase conserved C-terminal domain YPN_RS20035 PF00270 DEAD/DEAH box helicase YPN_RS20040 PF03616 Sodium/glutamate symporter YPN_RS20045 PF00860 Permease family YPN_RS20050 PF05170 AsmA family YPN_RS20055 PF00583 Acetyltransferase (GNAT) family YPN_RS20055 PF09500 Putative thioesterase (yiiD_Cterm) YPN_RS20060 PF00665 Integrase core domain YPN_RS20060 PF02796 Helix-turn-helix domain of resolvase YPN_RS20065 PF01695 IstB-like ATP binding protein YPN_RS20070 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_RS20075 PF08501 Shikimate dehydrogenase substrate binding domain YPN_RS20075 PF01488 Shikimate / quinate 5-dehydrogenase YPN_RS20075 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPN_RS20080 PF01300 Telomere recombination YPN_RS20085 PF01396 Topoisomerase DNA binding C4 zinc finger YPN_RS20090 PF04361 Protein of unknown function (DUF494) YPN_RS20095 PF02481 DNA recombination-mediator protein A YPN_RS20095 PF17782 DprA winged helix domain YPN_RS20100 PF01327 Polypeptide deformylase YPN_RS20105 PF00551 Formyl transferase YPN_RS20105 PF02911 Formyl transferase, C-terminal domain YPN_RS20110 PF01189 16S rRNA methyltransferase RsmB/F YPN_RS20110 PF01029 NusB family YPN_RS20115 PF02080 TrkA-C domain YPN_RS20115 PF02254 TrkA-N domain YPN_RS20120 PF01741 Large-conductance mechanosensitive channel, MscL YPN_RS20125 PF03889 Alternative ribosome-rescue factor A YPN_RS20130 PF13411 MerR HTH family regulatory protein YPN_RS20135 PF01196 Ribosomal protein L17 YPN_RS20140 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPN_RS20140 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPN_RS20140 PF01000 RNA polymerase Rpb3/RpoA insert domain YPN_RS20145 PF01479 S4 domain YPN_RS20145 PF00163 Ribosomal protein S4/S9 N-terminal domain YPN_RS20150 PF00411 Ribosomal protein S11 YPN_RS20155 PF00416 Ribosomal protein S13/S18 YPN_RS20160 PF00444 Ribosomal protein L36 YPN_RS20165 PF00344 SecY translocase YPN_RS20170 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPN_RS20175 PF00327 Ribosomal protein L30p/L7e YPN_RS20180 PF00333 Ribosomal protein S5, N-terminal domain YPN_RS20180 PF03719 Ribosomal protein S5, C-terminal domain YPN_RS20185 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPN_RS20190 PF00347 Ribosomal protein L6 YPN_RS20195 PF00410 Ribosomal protein S8 YPN_RS20200 PF00253 Ribosomal protein S14p/S29e YPN_RS20205 PF00281 Ribosomal protein L5 YPN_RS20205 PF00673 ribosomal L5P family C-terminus YPN_RS20210 PF00467 KOW motif YPN_RS20210 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPN_RS20215 PF00238 Ribosomal protein L14p/L23e YPN_RS20220 PF00366 Ribosomal protein S17 YPN_RS20225 PF00831 Ribosomal L29 protein YPN_RS20230 PF00252 Ribosomal protein L16p/L10e YPN_RS20235 PF07650 KH domain YPN_RS20235 PF00189 Ribosomal protein S3, C-terminal domain YPN_RS20240 PF00237 Ribosomal protein L22p/L17e YPN_RS20245 PF00203 Ribosomal protein S19 YPN_RS20250 PF03947 Ribosomal Proteins L2, C-terminal domain YPN_RS20250 PF00181 Ribosomal Proteins L2, RNA binding domain YPN_RS20255 PF00276 Ribosomal protein L23 YPN_RS20260 PF00573 Ribosomal protein L4/L1 family YPN_RS20265 PF00297 Ribosomal protein L3 YPN_RS20270 PF00338 Ribosomal protein S10p/S20e YPN_RS20275 PF00210 Ferritin-like domain YPN_RS20280 PF04324 BFD-like [2Fe-2S] binding domain YPN_RS20285 PF01797 Transposase IS200 like YPN_RS20290 PF03143 Elongation factor Tu C-terminal domain YPN_RS20290 PF03144 Elongation factor Tu domain 2 YPN_RS20290 PF00009 Elongation factor Tu GTP binding domain YPN_RS20295 PF03144 Elongation factor Tu domain 2 YPN_RS20295 PF14492 Elongation Factor G, domain II YPN_RS20295 PF00009 Elongation factor Tu GTP binding domain YPN_RS20295 PF00679 Elongation factor G C-terminus YPN_RS20295 PF03764 Elongation factor G, domain IV YPN_RS20300 PF00177 Ribosomal protein S7p/S5e YPN_RS20305 PF00164 Ribosomal protein S12/S23 YPN_RS20310 PF04077 DsrH like protein YPN_RS20315 PF02635 DsrE/DsrF-like family YPN_RS20320 PF02635 DsrE/DsrF-like family YPN_RS20325 PF08348 YheO-like PAS domain YPN_RS20325 PF13309 HTH domain YPN_RS20330 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPN_RS20330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_RS20335 PF04102 SlyX YPN_RS20340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPN_RS20345 PF09526 Probable metal-binding protein (DUF2387) YPN_RS20350 PF00999 Sodium/hydrogen exchanger family YPN_RS20350 PF02254 TrkA-N domain YPN_RS20355 PF02525 Flavodoxin-like fold YPN_RS20365 PF00535 Glycosyl transferase family 2 YPN_RS20375 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPN_RS20380 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS20385 PF00005 ABC transporter YPN_RS20390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPN_RS20395 PF01810 LysE type translocator YPN_RS20400 PF00561 alpha/beta hydrolase fold YPN_RS20405 PF06794 Uncharacterised protein family (UPF0270) YPN_RS20410 PF00485 Phosphoribulokinase / Uridine kinase family YPN_RS20420 PF02566 OsmC-like protein YPN_RS20425 PF00027 Cyclic nucleotide-binding domain YPN_RS20425 PF13545 Crp-like helix-turn-helix domain YPN_RS20430 PF12805 FUSC-like inner membrane protein yccS YPN_RS20435 PF00202 Aminotransferase class-III YPN_RS20440 PF00117 Glutamine amidotransferase class-I YPN_RS20445 PF05872 Bacterial protein of unknown function (DUF853) YPN_RS20450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPN_RS20455 PF02056 Family 4 glycosyl hydrolase YPN_RS20455 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPN_RS20460 PF00356 Bacterial regulatory proteins, lacI family YPN_RS20470 PF07690 Major Facilitator Superfamily YPN_RS20475 PF07969 Amidohydrolase family YPN_RS20480 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPN_RS20480 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPN_RS20480 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPN_RS20480 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPN_RS20480 PF04324 BFD-like [2Fe-2S] binding domain YPN_RS20485 PF13806 Rieske-like [2Fe-2S] domain YPN_RS20490 PF01226 Formate/nitrite transporter YPN_RS20495 PF14824 Sirohaem biosynthesis protein central YPN_RS20495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPN_RS20495 PF10414 Sirohaem synthase dimerisation region YPN_RS20500 PF00579 tRNA synthetases class I (W and Y) YPN_RS20505 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS20510 PF00834 Ribulose-phosphate 3 epimerase family YPN_RS20515 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPN_RS20520 PF05036 Sporulation related domain YPN_RS20525 PF01761 3-dehydroquinate synthase YPN_RS20530 PF01202 Shikimate kinase YPN_RS20535 PF00263 Bacterial type II and III secretion system protein YPN_RS20535 PF03958 Bacterial type II/III secretion system short domain YPN_RS20565 PF00905 Penicillin binding protein transpeptidase domain YPN_RS20565 PF17092 Penicillin-binding protein OB-like domain YPN_RS20565 PF00912 Transglycosylase YPN_RS20570 PF00293 NUDIX domain YPN_RS20580 PF07095 Intracellular growth attenuator protein IgaA YPN_RS20585 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS20590 PF01479 S4 domain YPN_RS20595 PF01430 Hsp33 protein YPN_RS20600 PF01293 Phosphoenolpyruvate carboxykinase YPN_RS20605 PF00512 His Kinase A (phospho-acceptor) domain YPN_RS20605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS20605 PF00672 HAMP domain YPN_RS20610 PF00072 Response regulator receiver domain YPN_RS20610 PF00486 Transcriptional regulatory protein, C terminal YPN_RS20615 PF03449 Transcription elongation factor, N-terminal YPN_RS20615 PF01272 Transcription elongation factor, GreA/GreB, C-term YPN_RS20620 PF00575 S1 RNA binding domain YPN_RS20620 PF09371 Tex-like protein N-terminal domain YPN_RS20620 PF16921 Tex protein YqgF-like domain YPN_RS20620 PF17674 HHH domain YPN_RS20630 PF04023 FeoA domain YPN_RS20635 PF07670 Nucleoside recognition YPN_RS20635 PF02421 Ferrous iron transport protein B YPN_RS20635 PF17910 FeoB cytosolic helical domain YPN_RS20635 PF07664 Ferrous iron transport protein B C terminus YPN_RS20640 PF09012 FeoC like transcriptional regulator YPN_RS20645 PF07338 Protein of unknown function (DUF1471) YPN_RS20650 PF00561 alpha/beta hydrolase fold YPN_RS20655 PF00156 Phosphoribosyl transferase domain YPN_RS20660 PF01106 NifU-like domain YPN_RS20660 PF01521 Iron-sulphur cluster biosynthesis YPN_RS20665 PF02446 4-alpha-glucanotransferase YPN_RS20670 PF00343 Carbohydrate phosphorylase YPN_RS20675 PF00343 Carbohydrate phosphorylase YPN_RS20680 PF00196 Bacterial regulatory proteins, luxR family YPN_RS20680 PF17874 MalT-like TPR region YPN_RS20685 PF01695 IstB-like ATP binding protein YPN_RS20690 PF02796 Helix-turn-helix domain of resolvase YPN_RS20690 PF00665 Integrase core domain YPN_RS20700 PF00581 Rhodanese-like domain YPN_RS20705 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPN_RS20705 PF01694 Rhomboid family YPN_RS20710 PF08220 DeoR-like helix-turn-helix domain YPN_RS20710 PF00455 DeoR C terminal sensor domain YPN_RS20720 PF13276 HTH-like domain YPN_RS20720 PF00665 Integrase core domain YPN_RS20720 PF13333 Integrase core domain YPN_RS20730 PF00986 DNA gyrase B subunit, carboxyl terminus YPN_RS20730 PF01751 Toprim domain YPN_RS20730 PF18053 DNA gyrase B subunit insert domain YPN_RS20730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPN_RS20730 PF00204 DNA gyrase B YPN_RS20735 PF02463 RecF/RecN/SMC N terminal domain YPN_RS20745 PF02767 DNA polymerase III beta subunit, central domain YPN_RS20745 PF00712 DNA polymerase III beta subunit, N-terminal domain YPN_RS20745 PF02768 DNA polymerase III beta subunit, C-terminal domain YPN_RS20750 PF08299 Bacterial dnaA protein helix-turn-helix YPN_RS20750 PF00308 Bacterial dnaA protein YPN_RS20750 PF11638 DnaA N-terminal domain YPN_RS20755 PF00468 Ribosomal protein L34 YPN_RS20760 PF00825 Ribonuclease P YPN_RS20765 PF14849 YidC periplasmic domain YPN_RS20765 PF02096 60Kd inner membrane protein YPN_RS20770 PF10396 GTP-binding protein TrmE N-terminus YPN_RS20770 PF01926 50S ribosome-binding GTPase YPN_RS20770 PF12631 MnmE helical domain YPN_RS20775 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPN_RS20775 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPN_RS20775 PF07055 Enoyl reductase FAD binding domain YPN_RS20790 PF00860 Permease family YPN_RS20795 PF13419 Haloacid dehalogenase-like hydrolase YPN_RS20800 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS20805 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS20810 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPN_RS20820 PF01895 PhoU domain YPN_RS20825 PF00005 ABC transporter YPN_RS20830 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS20835 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS20840 PF12849 PBP superfamily domain YPN_RS20845 PF01380 SIS domain YPN_RS20850 PF00132 Bacterial transferase hexapeptide (six repeats) YPN_RS20850 PF12804 MobA-like NTP transferase domain YPN_RS20855 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPN_RS20855 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPN_RS20860 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPN_RS20860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_RS20865 PF00231 ATP synthase YPN_RS20870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPN_RS20870 PF00306 ATP synthase alpha/beta chain, C terminal domain YPN_RS20870 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPN_RS20875 PF00213 ATP synthase delta (OSCP) subunit YPN_RS20880 PF00430 ATP synthase B/B' CF(0) YPN_RS20885 PF00137 ATP synthase subunit C YPN_RS20890 PF00119 ATP synthase A chain YPN_RS20895 PF03899 ATP synthase I chain YPN_RS20900 PF02527 rRNA small subunit methyltransferase G YPN_RS20905 PF01134 Glucose inhibited division protein A YPN_RS20905 PF13932 GidA associated domain YPN_RS20930 PF05762 VWA domain containing CoxE-like protein YPN_RS21060 PF05860 haemagglutination activity domain YPN_RS21060 PF13332 Hemagglutinin repeat YPN_RS21145 PF00528 Binding-protein-dependent transport system inner membrane component YPN_RS21145 PF14785 Maltose transport system permease protein MalF P2 domain