locus-tag class description YPZ3_RS00005 PF00258 Flavodoxin YPZ3_RS00010 PF01037 Lrp/AsnC ligand binding domain YPZ3_RS00015 PF03590 Aspartate-ammonia ligase YPZ3_RS00020 PF05762 VWA domain containing CoxE-like protein YPZ3_RS00025 PF12592 Protein of unknown function (DUF3763) YPZ3_RS00025 PF07728 AAA domain (dynein-related subfamily) YPZ3_RS00025 PF17868 AAA lid domain YPZ3_RS00030 PF02705 K+ potassium transporter YPZ3_RS00035 PF05025 RbsD / FucU transport protein family YPZ3_RS00040 PF00294 pfkB family carbohydrate kinase YPZ3_RS00050 PF07690 Major Facilitator Superfamily YPZ3_RS00055 PF07729 FCD domain YPZ3_RS00055 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS00085 PF00872 Transposase, Mutator family YPZ3_RS00090 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPZ3_RS00095 PF12804 MobA-like NTP transferase domain YPZ3_RS00100 PF06288 Protein of unknown function (DUF1040) YPZ3_RS00105 PF01636 Phosphotransferase enzyme family YPZ3_RS00110 PF01323 DSBA-like thioredoxin domain YPZ3_RS00115 PF01612 3'-5' exonuclease YPZ3_RS00115 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPZ3_RS00115 PF01367 5'-3' exonuclease, C-terminal SAM fold YPZ3_RS00115 PF00476 DNA polymerase family A YPZ3_RS00125 PF01797 Transposase IS200 like YPZ3_RS00130 PF01926 50S ribosome-binding GTPase YPZ3_RS00135 PF04220 Der GTPase activator (YihI) YPZ3_RS00140 PF06969 HemN C-terminal domain YPZ3_RS00140 PF04055 Radical SAM superfamily YPZ3_RS00145 PF00158 Sigma-54 interaction domain YPZ3_RS00145 PF00072 Response regulator receiver domain YPZ3_RS00145 PF02954 Bacterial regulatory protein, Fis family YPZ3_RS00150 PF00989 PAS fold YPZ3_RS00150 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS00150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS00155 PF00120 Glutamine synthetase, catalytic domain YPZ3_RS00155 PF03951 Glutamine synthetase, beta-Grasp domain YPZ3_RS00165 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS00165 PF00679 Elongation factor G C-terminus YPZ3_RS00165 PF03144 Elongation factor Tu domain 2 YPZ3_RS00170 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS00175 PF03631 Virulence factor BrkB YPZ3_RS00180 PF02580 D-Tyr-tRNA(Tyr) deacylase YPZ3_RS00185 PF01695 IstB-like ATP binding protein YPZ3_RS00190 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS00190 PF00665 Integrase core domain YPZ3_RS00195 PF09500 Putative thioesterase (yiiD_Cterm) YPZ3_RS00195 PF00583 Acetyltransferase (GNAT) family YPZ3_RS00200 PF05170 AsmA family YPZ3_RS00205 PF00860 Permease family YPZ3_RS00210 PF03616 Sodium/glutamate symporter YPZ3_RS00215 PF17191 RecG wedge domain YPZ3_RS00215 PF00271 Helicase conserved C-terminal domain YPZ3_RS00215 PF00270 DEAD/DEAH box helicase YPZ3_RS00220 PF00588 SpoU rRNA Methylase family YPZ3_RS00220 PF12105 SpoU, rRNA methylase, C-terminal YPZ3_RS00225 PF04607 Region found in RelA / SpoT proteins YPZ3_RS00225 PF13291 ACT domain YPZ3_RS00225 PF02824 TGS domain YPZ3_RS00230 PF01192 RNA polymerase Rpb6 YPZ3_RS00235 PF00625 Guanylate kinase YPZ3_RS00240 PF03120 NAD-dependent DNA ligase OB-fold domain YPZ3_RS00240 PF01653 NAD-dependent DNA ligase adenylation domain YPZ3_RS00245 PF03458 UPF0126 domain YPZ3_RS00250 PF03755 YicC-like family, N-terminal region YPZ3_RS00250 PF08340 Domain of unknown function (DUF1732) YPZ3_RS00255 PF03725 3' exoribonuclease family, domain 2 YPZ3_RS00255 PF01138 3' exoribonuclease family, domain 1 YPZ3_RS00260 PF00156 Phosphoribosyl transferase domain YPZ3_RS00265 PF00440 Bacterial regulatory proteins, tetR family YPZ3_RS00270 PF00692 dUTPase YPZ3_RS00275 PF04127 DNA / pantothenate metabolism flavoprotein YPZ3_RS00275 PF02441 Flavoprotein YPZ3_RS00280 PF04002 RadC-like JAB domain YPZ3_RS00285 PF00830 Ribosomal L28 family YPZ3_RS00290 PF00471 Ribosomal protein L33 YPZ3_RS00295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPZ3_RS00295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPZ3_RS00295 PF06827 Zinc finger found in FPG and IleRS YPZ3_RS00300 PF01467 Cytidylyltransferase-like YPZ3_RS00305 PF00535 Glycosyl transferase family 2 YPZ3_RS00310 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPZ3_RS00315 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPZ3_RS00320 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPZ3_RS00325 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS00330 PF00155 Aminotransferase class I and II YPZ3_RS00335 PF00107 Zinc-binding dehydrogenase YPZ3_RS00335 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_RS00345 PF01551 Peptidase family M23 YPZ3_RS00350 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPZ3_RS00350 PF01676 Metalloenzyme superfamily YPZ3_RS00355 PF00581 Rhodanese-like domain YPZ3_RS00360 PF00462 Glutaredoxin YPZ3_RS00365 PF02556 Preprotein translocase subunit SecB YPZ3_RS00370 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPZ3_RS00370 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPZ3_RS00380 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_RS00380 PF06426 Serine acetyltransferase, N-terminal YPZ3_RS00385 PF00588 SpoU rRNA Methylase family YPZ3_RS00390 PF12833 Helix-turn-helix domain YPZ3_RS00390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPZ3_RS00390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPZ3_RS00390 PF02805 Metal binding domain of Ada YPZ3_RS00395 PF16527 Two-component sensor protein CpxA, periplasmic domain YPZ3_RS00395 PF00672 HAMP domain YPZ3_RS00395 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS00400 PF00072 Response regulator receiver domain YPZ3_RS00400 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS00405 PF07813 LTXXQ motif family protein YPZ3_RS00410 PF04754 Putative transposase, YhgA-like YPZ3_RS00415 PF16916 Dimerisation domain of Zinc Transporter YPZ3_RS00415 PF01545 Cation efflux family YPZ3_RS00420 PF00365 Phosphofructokinase YPZ3_RS00435 PF00939 Sodium:sulfate symporter transmembrane region YPZ3_RS00440 PF03737 Aldolase/RraA YPZ3_RS00445 PF02585 GlcNAc-PI de-N-acetylase YPZ3_RS00450 PF03466 LysR substrate binding domain YPZ3_RS00450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS00455 PF00121 Triosephosphate isomerase YPZ3_RS00460 PF07305 Protein of unknown function (DUF1454) YPZ3_RS00465 PF05656 Protein of unknown function (DUF805) YPZ3_RS00470 PF00970 Oxidoreductase FAD-binding domain YPZ3_RS00470 PF00175 Oxidoreductase NAD-binding domain YPZ3_RS00475 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPZ3_RS00480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_RS00480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_RS00485 PF00230 Major intrinsic protein YPZ3_RS00495 PF06005 Cell division protein ZapB YPZ3_RS00505 PF00664 ABC transporter transmembrane region YPZ3_RS00505 PF00005 ABC transporter YPZ3_RS00505 PF03412 Peptidase C39 family YPZ3_RS00510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS00510 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_RS00530 PF03737 Aldolase/RraA YPZ3_RS00535 PF01040 UbiA prenyltransferase family YPZ3_RS00540 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS00540 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS00540 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS00545 PF00227 Proteasome subunit YPZ3_RS00550 PF05036 Sporulation related domain YPZ3_RS00555 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS00565 PF17764 3′ DNA-binding domain (3′BD) YPZ3_RS00565 PF00271 Helicase conserved C-terminal domain YPZ3_RS00565 PF18074 Primosomal protein N C-terminal domain YPZ3_RS00565 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPZ3_RS00565 PF00270 DEAD/DEAH box helicase YPZ3_RS00570 PF01197 Ribosomal protein L31 YPZ3_RS00575 PF05360 yiaA/B two helix domain YPZ3_RS00585 PF01340 Met Apo-repressor, MetJ YPZ3_RS00595 PF00742 Homoserine dehydrogenase YPZ3_RS00595 PF00696 Amino acid kinase family YPZ3_RS00595 PF03447 Homoserine dehydrogenase, NAD binding domain YPZ3_RS00600 PF02219 Methylenetetrahydrofolate reductase YPZ3_RS00605 PF13333 Integrase core domain YPZ3_RS00605 PF00665 Integrase core domain YPZ3_RS00605 PF13276 HTH-like domain YPZ3_RS00615 PF00455 DeoR C terminal sensor domain YPZ3_RS00615 PF08220 DeoR-like helix-turn-helix domain YPZ3_RS00620 PF01694 Rhomboid family YPZ3_RS00620 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPZ3_RS00625 PF00581 Rhodanese-like domain YPZ3_RS00630 PF17874 MalT-like TPR region YPZ3_RS00630 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS00635 PF00343 Carbohydrate phosphorylase YPZ3_RS00640 PF00343 Carbohydrate phosphorylase YPZ3_RS00645 PF02446 4-alpha-glucanotransferase YPZ3_RS00650 PF01521 Iron-sulphur cluster biosynthesis YPZ3_RS00650 PF01106 NifU-like domain YPZ3_RS00655 PF00156 Phosphoribosyl transferase domain YPZ3_RS00660 PF00561 alpha/beta hydrolase fold YPZ3_RS00665 PF07338 Protein of unknown function (DUF1471) YPZ3_RS00670 PF09012 FeoC like transcriptional regulator YPZ3_RS00675 PF07664 Ferrous iron transport protein B C terminus YPZ3_RS00675 PF17910 FeoB cytosolic helical domain YPZ3_RS00675 PF02421 Ferrous iron transport protein B YPZ3_RS00675 PF07670 Nucleoside recognition YPZ3_RS00680 PF04023 FeoA domain YPZ3_RS00690 PF00575 S1 RNA binding domain YPZ3_RS00690 PF09371 Tex-like protein N-terminal domain YPZ3_RS00690 PF16921 Tex protein YqgF-like domain YPZ3_RS00690 PF17674 HHH domain YPZ3_RS00695 PF03449 Transcription elongation factor, N-terminal YPZ3_RS00695 PF01272 Transcription elongation factor, GreA/GreB, C-term YPZ3_RS00700 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS00700 PF00072 Response regulator receiver domain YPZ3_RS00705 PF00672 HAMP domain YPZ3_RS00705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS00705 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS00710 PF01293 Phosphoenolpyruvate carboxykinase YPZ3_RS00715 PF01430 Hsp33 protein YPZ3_RS00720 PF01479 S4 domain YPZ3_RS00725 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS00730 PF07095 Intracellular growth attenuator protein IgaA YPZ3_RS00740 PF00293 NUDIX domain YPZ3_RS00745 PF00905 Penicillin binding protein transpeptidase domain YPZ3_RS00745 PF00912 Transglycosylase YPZ3_RS00745 PF17092 Penicillin-binding protein OB-like domain YPZ3_RS00775 PF03958 Bacterial type II/III secretion system short domain YPZ3_RS00775 PF00263 Bacterial type II and III secretion system protein YPZ3_RS00780 PF01202 Shikimate kinase YPZ3_RS00785 PF01761 3-dehydroquinate synthase YPZ3_RS00790 PF05036 Sporulation related domain YPZ3_RS00795 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPZ3_RS00800 PF00834 Ribulose-phosphate 3 epimerase family YPZ3_RS00805 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS00810 PF00579 tRNA synthetases class I (W and Y) YPZ3_RS00815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPZ3_RS00815 PF10414 Sirohaem synthase dimerisation region YPZ3_RS00815 PF14824 Sirohaem biosynthesis protein central YPZ3_RS00820 PF01226 Formate/nitrite transporter YPZ3_RS00825 PF13806 Rieske-like [2Fe-2S] domain YPZ3_RS00830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPZ3_RS00830 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS00830 PF04324 BFD-like [2Fe-2S] binding domain YPZ3_RS00830 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPZ3_RS00830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPZ3_RS00835 PF07969 Amidohydrolase family YPZ3_RS00840 PF07690 Major Facilitator Superfamily YPZ3_RS00850 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS00855 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPZ3_RS00855 PF02056 Family 4 glycosyl hydrolase YPZ3_RS00860 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPZ3_RS00865 PF05872 Bacterial protein of unknown function (DUF853) YPZ3_RS00870 PF00117 Glutamine amidotransferase class-I YPZ3_RS00875 PF00202 Aminotransferase class-III YPZ3_RS00880 PF12805 FUSC-like inner membrane protein yccS YPZ3_RS00885 PF00027 Cyclic nucleotide-binding domain YPZ3_RS00885 PF13545 Crp-like helix-turn-helix domain YPZ3_RS00890 PF02566 OsmC-like protein YPZ3_RS00900 PF00485 Phosphoribulokinase / Uridine kinase family YPZ3_RS00905 PF06794 Uncharacterised protein family (UPF0270) YPZ3_RS00910 PF00561 alpha/beta hydrolase fold YPZ3_RS00915 PF01810 LysE type translocator YPZ3_RS00920 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPZ3_RS00925 PF00005 ABC transporter YPZ3_RS00930 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS00935 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPZ3_RS00945 PF00535 Glycosyl transferase family 2 YPZ3_RS00955 PF02525 Flavodoxin-like fold YPZ3_RS00960 PF02254 TrkA-N domain YPZ3_RS00960 PF00999 Sodium/hydrogen exchanger family YPZ3_RS00965 PF09526 Probable metal-binding protein (DUF2387) YPZ3_RS00970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_RS00975 PF04102 SlyX YPZ3_RS00980 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPZ3_RS00980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_RS00985 PF08348 YheO-like PAS domain YPZ3_RS00985 PF13309 HTH domain YPZ3_RS00990 PF02635 DsrE/DsrF-like family YPZ3_RS00995 PF02635 DsrE/DsrF-like family YPZ3_RS01000 PF04077 DsrH like protein YPZ3_RS01005 PF00164 Ribosomal protein S12/S23 YPZ3_RS01010 PF00177 Ribosomal protein S7p/S5e YPZ3_RS01015 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS01015 PF14492 Elongation Factor G, domain II YPZ3_RS01015 PF00679 Elongation factor G C-terminus YPZ3_RS01015 PF03764 Elongation factor G, domain IV YPZ3_RS01015 PF03144 Elongation factor Tu domain 2 YPZ3_RS01020 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS01020 PF03143 Elongation factor Tu C-terminal domain YPZ3_RS01020 PF03144 Elongation factor Tu domain 2 YPZ3_RS01025 PF01797 Transposase IS200 like YPZ3_RS01030 PF04324 BFD-like [2Fe-2S] binding domain YPZ3_RS01035 PF00210 Ferritin-like domain YPZ3_RS01040 PF00338 Ribosomal protein S10p/S20e YPZ3_RS01045 PF00297 Ribosomal protein L3 YPZ3_RS01050 PF00573 Ribosomal protein L4/L1 family YPZ3_RS01055 PF00276 Ribosomal protein L23 YPZ3_RS01060 PF03947 Ribosomal Proteins L2, C-terminal domain YPZ3_RS01060 PF00181 Ribosomal Proteins L2, RNA binding domain YPZ3_RS01065 PF00203 Ribosomal protein S19 YPZ3_RS01070 PF00237 Ribosomal protein L22p/L17e YPZ3_RS01075 PF07650 KH domain YPZ3_RS01075 PF00189 Ribosomal protein S3, C-terminal domain YPZ3_RS01080 PF00252 Ribosomal protein L16p/L10e YPZ3_RS01085 PF00831 Ribosomal L29 protein YPZ3_RS01090 PF00366 Ribosomal protein S17 YPZ3_RS01095 PF00238 Ribosomal protein L14p/L23e YPZ3_RS01100 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPZ3_RS01100 PF00467 KOW motif YPZ3_RS01105 PF00673 ribosomal L5P family C-terminus YPZ3_RS01105 PF00281 Ribosomal protein L5 YPZ3_RS01110 PF00253 Ribosomal protein S14p/S29e YPZ3_RS01115 PF00410 Ribosomal protein S8 YPZ3_RS01120 PF00347 Ribosomal protein L6 YPZ3_RS01125 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPZ3_RS01130 PF00333 Ribosomal protein S5, N-terminal domain YPZ3_RS01130 PF03719 Ribosomal protein S5, C-terminal domain YPZ3_RS01135 PF00327 Ribosomal protein L30p/L7e YPZ3_RS01140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPZ3_RS01145 PF00344 SecY translocase YPZ3_RS01150 PF00444 Ribosomal protein L36 YPZ3_RS01155 PF00416 Ribosomal protein S13/S18 YPZ3_RS01160 PF00411 Ribosomal protein S11 YPZ3_RS01165 PF00163 Ribosomal protein S4/S9 N-terminal domain YPZ3_RS01165 PF01479 S4 domain YPZ3_RS01170 PF01000 RNA polymerase Rpb3/RpoA insert domain YPZ3_RS01170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPZ3_RS01170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPZ3_RS01175 PF01196 Ribosomal protein L17 YPZ3_RS01180 PF13411 MerR HTH family regulatory protein YPZ3_RS01185 PF03889 Alternative ribosome-rescue factor A YPZ3_RS01190 PF01741 Large-conductance mechanosensitive channel, MscL YPZ3_RS01195 PF02254 TrkA-N domain YPZ3_RS01195 PF02080 TrkA-C domain YPZ3_RS01200 PF01029 NusB family YPZ3_RS01200 PF01189 16S rRNA methyltransferase RsmB/F YPZ3_RS01205 PF02911 Formyl transferase, C-terminal domain YPZ3_RS01205 PF00551 Formyl transferase YPZ3_RS01210 PF01327 Polypeptide deformylase YPZ3_RS01215 PF17782 DprA winged helix domain YPZ3_RS01215 PF02481 DNA recombination-mediator protein A YPZ3_RS01220 PF04361 Protein of unknown function (DUF494) YPZ3_RS01225 PF01396 Topoisomerase DNA binding C4 zinc finger YPZ3_RS01230 PF01300 Telomere recombination YPZ3_RS01235 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPZ3_RS01235 PF08501 Shikimate dehydrogenase substrate binding domain YPZ3_RS01235 PF01488 Shikimate / quinate 5-dehydrogenase YPZ3_RS01240 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_RS01245 PF01695 IstB-like ATP binding protein YPZ3_RS01250 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS01250 PF00665 Integrase core domain YPZ3_RS01260 PF00474 Sodium:solute symporter family YPZ3_RS01265 PF04341 Protein of unknown function, DUF485 YPZ3_RS01270 PF16177 Acetyl-coenzyme A synthetase N-terminus YPZ3_RS01270 PF00501 AMP-binding enzyme YPZ3_RS01270 PF13193 AMP-binding enzyme C-terminal domain YPZ3_RS01275 PF00375 Sodium:dicarboxylate symporter family YPZ3_RS01280 PF00072 Response regulator receiver domain YPZ3_RS01280 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS01285 PF00072 Response regulator receiver domain YPZ3_RS01285 PF00672 HAMP domain YPZ3_RS01285 PF01627 Hpt domain YPZ3_RS01285 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS01285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPZ3_RS01285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS01290 PF03958 Bacterial type II/III secretion system short domain YPZ3_RS01290 PF00263 Bacterial type II and III secretion system protein YPZ3_RS01305 PF14525 AraC-binding-like domain YPZ3_RS01305 PF12833 Helix-turn-helix domain YPZ3_RS01325 PF01514 Secretory protein of YscJ/FliF family YPZ3_RS01340 PF00771 FHIPEP family YPZ3_RS01345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_RS01345 PF18269 T3SS EscN ATPase C-terminal domain YPZ3_RS01360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_RS01365 PF00813 FliP family YPZ3_RS01370 PF01313 Bacterial export proteins, family 3 YPZ3_RS01375 PF01311 Bacterial export proteins, family 1 YPZ3_RS01380 PF01312 FlhB HrpN YscU SpaS Family YPZ3_RS01385 PF04143 Sulphur transport YPZ3_RS01390 PF01206 Sulfurtransferase TusA YPZ3_RS01395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS01395 PF03466 LysR substrate binding domain YPZ3_RS01400 PF03222 Tryptophan/tyrosine permease family YPZ3_RS01405 PF01053 Cys/Met metabolism PLP-dependent enzyme YPZ3_RS01410 PF00005 ABC transporter YPZ3_RS01415 PF01032 FecCD transport family YPZ3_RS01420 PF01497 Periplasmic binding protein YPZ3_RS01425 PF05171 Haemin-degrading HemS.ChuX domain YPZ3_RS01430 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS01430 PF00593 TonB dependent receptor YPZ3_RS01435 PF13460 NAD(P)H-binding YPZ3_RS01440 PF06228 Haem utilisation ChuX/HutX YPZ3_RS01445 PF04055 Radical SAM superfamily YPZ3_RS01465 PF15608 PELOTA RNA binding domain YPZ3_RS01465 PF11202 Phosphoribosyl transferase (PRTase) YPZ3_RS01485 PF02342 TerD domain YPZ3_RS01490 PF02342 TerD domain YPZ3_RS01495 PF05099 Tellurite resistance protein TerB YPZ3_RS01500 PF03741 Integral membrane protein TerC family YPZ3_RS01505 PF02342 TerD domain YPZ3_RS01510 PF02342 TerD domain YPZ3_RS01520 PF13953 PapC C-terminal domain YPZ3_RS01520 PF13954 PapC N-terminal domain YPZ3_RS01520 PF00577 Outer membrane usher protein YPZ3_RS01525 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS01545 PF01565 FAD binding domain YPZ3_RS01545 PF08031 Berberine and berberine like YPZ3_RS01550 PF12951 Passenger-associated-transport-repeat YPZ3_RS01555 PF04345 Chorismate lyase YPZ3_RS01560 PF01040 UbiA prenyltransferase family YPZ3_RS01565 PF01553 Acyltransferase YPZ3_RS01570 PF01219 Prokaryotic diacylglycerol kinase YPZ3_RS01575 PF01726 LexA DNA binding domain YPZ3_RS01575 PF00717 Peptidase S24-like YPZ3_RS01580 PF01475 Ferric uptake regulator family YPZ3_RS01585 PF01207 Dihydrouridine synthase (Dus) YPZ3_RS01590 PF09583 Phage shock protein G (Phageshock_PspG) YPZ3_RS01595 PF00107 Zinc-binding dehydrogenase YPZ3_RS01595 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_RS01600 PF03796 DnaB-like helicase C terminal domain YPZ3_RS01600 PF00772 DnaB-like helicase N terminal domain YPZ3_RS01605 PF00842 Alanine racemase, C-terminal domain YPZ3_RS01605 PF01168 Alanine racemase, N-terminal domain YPZ3_RS01610 PF00155 Aminotransferase class I and II YPZ3_RS01615 PF04237 YjbR YPZ3_RS01620 PF17760 UvrA interaction domain YPZ3_RS01620 PF17755 UvrA DNA-binding domain YPZ3_RS01620 PF00005 ABC transporter YPZ3_RS01625 PF00436 Single-strand binding protein family YPZ3_RS01630 PF05336 L-rhamnose mutarotase YPZ3_RS01635 PF00465 Iron-containing alcohol dehydrogenase YPZ3_RS01640 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_RS01645 PF06134 L-rhamnose isomerase (RhaA) YPZ3_RS01650 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_RS01650 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_RS01665 PF12833 Helix-turn-helix domain YPZ3_RS01665 PF02311 AraC-like ligand binding domain YPZ3_RS01670 PF12833 Helix-turn-helix domain YPZ3_RS01670 PF02311 AraC-like ligand binding domain YPZ3_RS01675 PF06379 L-rhamnose-proton symport protein (RhaT) YPZ3_RS01700 PF13614 AAA domain YPZ3_RS01705 PF03796 DnaB-like helicase C terminal domain YPZ3_RS01705 PF00772 DnaB-like helicase N terminal domain YPZ3_RS01745 PF01131 DNA topoisomerase YPZ3_RS01745 PF01751 Toprim domain YPZ3_RS01755 PF00436 Single-strand binding protein family YPZ3_RS01940 PF13362 Toprim domain YPZ3_RS01940 PF08401 Domain of unknown function (DUF1738) YPZ3_RS01940 PF18818 Metallopeptidase superfamily domain YPZ3_RS01970 PF05717 IS66 Orf2 like protein YPZ3_RS01975 PF13817 IS66 C-terminal element YPZ3_RS01975 PF03050 Transposase IS66 family YPZ3_RS01975 PF13005 zinc-finger binding domain of transposase IS66 YPZ3_RS01975 PF13007 Transposase C of IS166 homeodomain YPZ3_RS01980 PF02384 N-6 DNA Methylase YPZ3_RS01980 PF12161 HsdM N-terminal domain YPZ3_RS02000 PF13361 UvrD-like helicase C-terminal domain YPZ3_RS02000 PF00580 UvrD/REP helicase N-terminal domain YPZ3_RS02000 PF12705 PD-(D/E)XK nuclease superfamily YPZ3_RS02010 PF00589 Phage integrase family YPZ3_RS02010 PF02899 Phage integrase, N-terminal SAM-like domain YPZ3_RS02025 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS02025 PF13247 4Fe-4S dicluster domain YPZ3_RS02025 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPZ3_RS02030 PF13247 4Fe-4S dicluster domain YPZ3_RS02030 PF12800 4Fe-4S binding domain YPZ3_RS02035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_RS02035 PF01568 Molydopterin dinucleotide binding domain YPZ3_RS02035 PF00384 Molybdopterin oxidoreductase YPZ3_RS02040 PF02683 Cytochrome C biogenesis protein transmembrane region YPZ3_RS02040 PF11412 Disulphide bond corrector protein DsbC YPZ3_RS02045 PF03091 CutA1 divalent ion tolerance protein YPZ3_RS02050 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPZ3_RS02055 PF10415 Fumarase C C-terminus YPZ3_RS02055 PF00206 Lyase YPZ3_RS02060 PF04186 FxsA cytoplasmic membrane protein YPZ3_RS02065 PF00166 Chaperonin 10 Kd subunit YPZ3_RS02070 PF00118 TCP-1/cpn60 chaperonin family YPZ3_RS02075 PF13698 Domain of unknown function (DUF4156) YPZ3_RS02080 PF04055 Radical SAM superfamily YPZ3_RS02085 PF01132 Elongation factor P (EF-P) OB domain YPZ3_RS02085 PF08207 Elongation factor P (EF-P) KOW-like domain YPZ3_RS02085 PF09285 Elongation factor P, C-terminal YPZ3_RS02090 PF00893 Small Multidrug Resistance protein YPZ3_RS02095 PF02313 Fumarate reductase subunit D YPZ3_RS02100 PF02300 Fumarate reductase subunit C YPZ3_RS02105 PF13183 4Fe-4S dicluster domain YPZ3_RS02105 PF13085 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS02110 PF00890 FAD binding domain YPZ3_RS02110 PF02910 Fumarate reductase flavoprotein C-term YPZ3_RS02120 PF00152 tRNA synthetases class II (D, K and N) YPZ3_RS02125 PF00924 Mechanosensitive ion channel YPZ3_RS02125 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPZ3_RS02125 PF12795 Mechanosensitive ion channel porin domain YPZ3_RS02130 PF02666 Phosphatidylserine decarboxylase YPZ3_RS02135 PF03193 RsgA GTPase YPZ3_RS02145 PF00929 Exonuclease YPZ3_RS02160 PF08331 Domain of unknown function (DUF1730) YPZ3_RS02165 PF01256 Carbohydrate kinase YPZ3_RS02165 PF03853 YjeF-related protein N-terminus YPZ3_RS02170 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPZ3_RS02175 PF01520 N-acetylmuramoyl-L-alanine amidase YPZ3_RS02180 PF08676 MutL C terminal dimerisation domain YPZ3_RS02180 PF01119 DNA mismatch repair protein, C-terminal domain YPZ3_RS02190 PF17209 Hfq protein YPZ3_RS02195 PF01926 50S ribosome-binding GTPase YPZ3_RS02195 PF16360 GTP-binding GTPase Middle Region YPZ3_RS02195 PF13167 GTP-binding GTPase N-terminal YPZ3_RS02200 PF01145 SPFH domain / Band 7 family YPZ3_RS02200 PF12221 Bacterial membrane protein N terminal YPZ3_RS02205 PF01145 SPFH domain / Band 7 family YPZ3_RS02210 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPZ3_RS02215 PF00709 Adenylosuccinate synthetase YPZ3_RS02220 PF02082 Transcriptional regulator YPZ3_RS02225 PF00575 S1 RNA binding domain YPZ3_RS02225 PF17876 Cold shock domain YPZ3_RS02225 PF08461 Ribonuclease R winged-helix domain YPZ3_RS02225 PF00773 RNB domain YPZ3_RS02225 PF08206 Ribonuclease B OB domain YPZ3_RS02230 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPZ3_RS02230 PF00588 SpoU rRNA Methylase family YPZ3_RS02235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPZ3_RS02235 PF18158 Adaptive response protein AidB N-terminal domain YPZ3_RS02235 PF02770 Acyl-CoA dehydrogenase, middle domain YPZ3_RS02240 PF07338 Protein of unknown function (DUF1471) YPZ3_RS02250 PF01695 IstB-like ATP binding protein YPZ3_RS02255 PF00665 Integrase core domain YPZ3_RS02255 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS02260 PF07728 AAA domain (dynein-related subfamily) YPZ3_RS02260 PF12102 Domain of unknown function (DUF3578) YPZ3_RS02275 PF01527 Transposase YPZ3_RS02280 PF01555 DNA methylase YPZ3_RS02305 PF00665 Integrase core domain YPZ3_RS02330 PF05987 Bacterial protein of unknown function (DUF898) YPZ3_RS02340 PF12833 Helix-turn-helix domain YPZ3_RS02345 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_RS02350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_RS02360 PF05524 PEP-utilising enzyme, N-terminal YPZ3_RS02360 PF00391 PEP-utilising enzyme, mobile domain YPZ3_RS02360 PF02896 PEP-utilising enzyme, TIM barrel domain YPZ3_RS02360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_RS02360 PF00381 PTS HPr component phosphorylation site YPZ3_RS02365 PF10696 Protein of unknown function (DUF2501) YPZ3_RS02370 PF03992 Antibiotic biosynthesis monooxygenase YPZ3_RS02375 PF01791 DeoC/LacD family aldolase YPZ3_RS02380 PF13407 Periplasmic binding protein domain YPZ3_RS02385 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS02390 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS02395 PF00005 ABC transporter YPZ3_RS02410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_RS02410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_RS02415 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPZ3_RS02435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS02440 PF00873 AcrB/AcrD/AcrF family YPZ3_RS02460 PF01095 Pectinesterase YPZ3_RS02465 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_RS02470 PF07256 Protein of unknown function (DUF1435) YPZ3_RS02480 PF05175 Methyltransferase small domain YPZ3_RS02480 PF08468 Methyltransferase small domain N-terminal YPZ3_RS02485 PF03603 DNA polymerase III psi subunit YPZ3_RS02490 PF00583 Acetyltransferase (GNAT) family YPZ3_RS02495 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS02495 PF03144 Elongation factor Tu domain 2 YPZ3_RS02495 PF16658 Class II release factor RF3, C-terminal domain YPZ3_RS02500 PF04972 BON domain YPZ3_RS02505 PF07043 Protein of unknown function (DUF1328) YPZ3_RS02510 PF01734 Patatin-like phospholipase YPZ3_RS02515 PF01026 TatD related DNase YPZ3_RS02520 PF01773 Na+ dependent nucleoside transporter N-terminus YPZ3_RS02520 PF07662 Na+ dependent nucleoside transporter C-terminus YPZ3_RS02520 PF07670 Nucleoside recognition YPZ3_RS02525 PF01791 DeoC/LacD family aldolase YPZ3_RS02530 PF02885 Glycosyl transferase family, helical bundle domain YPZ3_RS02530 PF00591 Glycosyl transferase family, a/b domain YPZ3_RS02530 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPZ3_RS02535 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPZ3_RS02535 PF00591 Glycosyl transferase family, a/b domain YPZ3_RS02535 PF02885 Glycosyl transferase family, helical bundle domain YPZ3_RS02540 PF01676 Metalloenzyme superfamily YPZ3_RS02545 PF01048 Phosphorylase superfamily YPZ3_RS02550 PF10144 Bacterial virulence factor haemolysin YPZ3_RS02555 PF18429 Domain of unknown function (DUF5609) YPZ3_RS02560 PF18073 Rubredoxin metal binding domain YPZ3_RS02565 PF01381 Helix-turn-helix YPZ3_RS02565 PF13521 AAA domain YPZ3_RS02570 PF02661 Fic/DOC family YPZ3_RS02580 PF00691 OmpA family YPZ3_RS02585 PF17152 Periplasmic sensor domain YPZ3_RS02585 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_RS02595 PF00690 Cation transporter/ATPase, N-terminus YPZ3_RS02595 PF00689 Cation transporting ATPase, C-terminus YPZ3_RS02600 PF14718 Soluble lytic murein transglycosylase L domain YPZ3_RS02600 PF01464 Transglycosylase SLT domain YPZ3_RS02605 PF01371 Trp repressor protein YPZ3_RS02610 PF01931 Protein of unknown function DUF84 YPZ3_RS02615 PF00300 Histidine phosphatase superfamily (branch 1) YPZ3_RS02620 PF12833 Helix-turn-helix domain YPZ3_RS02620 PF06445 GyrI-like small molecule binding domain YPZ3_RS02625 PF05981 CreA protein YPZ3_RS02630 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS02630 PF00072 Response regulator receiver domain YPZ3_RS02635 PF03447 Homoserine dehydrogenase, NAD binding domain YPZ3_RS02635 PF01842 ACT domain YPZ3_RS02635 PF13840 ACT domain YPZ3_RS02635 PF00696 Amino acid kinase family YPZ3_RS02635 PF00742 Homoserine dehydrogenase YPZ3_RS02640 PF08544 GHMP kinases C terminal YPZ3_RS02640 PF00288 GHMP kinases N terminal domain YPZ3_RS02645 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_RS02645 PF14821 Threonine synthase N terminus YPZ3_RS02650 PF03883 Peroxide stress protein YaaA YPZ3_RS02655 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPZ3_RS02660 PF00994 Probable molybdopterin binding domain YPZ3_RS02665 PF07690 Major Facilitator Superfamily YPZ3_RS02675 PF01184 GPR1/FUN34/yaaH family YPZ3_RS02680 PF00012 Hsp70 protein YPZ3_RS02685 PF01556 DnaJ C terminal domain YPZ3_RS02685 PF00226 DnaJ domain YPZ3_RS02685 PF00684 DnaJ central domain YPZ3_RS02690 PF06965 Na+/H+ antiporter 1 YPZ3_RS02695 PF03466 LysR substrate binding domain YPZ3_RS02695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS02700 PF01649 Ribosomal protein S20 YPZ3_RS02715 PF06827 Zinc finger found in FPG and IleRS YPZ3_RS02715 PF08264 Anticodon-binding domain of tRNA YPZ3_RS02715 PF00133 tRNA synthetases class I (I, L, M and V) YPZ3_RS02720 PF01252 Signal peptidase (SPase) II YPZ3_RS02725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_RS02730 PF02401 LytB protein YPZ3_RS02745 PF01797 Transposase IS200 like YPZ3_RS02750 PF05173 Dihydrodipicolinate reductase, C-terminus YPZ3_RS02750 PF01113 Dihydrodipicolinate reductase, N-terminus YPZ3_RS02755 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPZ3_RS02755 PF00117 Glutamine amidotransferase class-I YPZ3_RS02760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPZ3_RS02760 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPZ3_RS02760 PF02142 MGS-like domain YPZ3_RS02765 PF01810 LysE type translocator YPZ3_RS02770 PF06738 Putative threonine/serine exporter YPZ3_RS02775 PF12821 Threonine/Serine exporter, ThrE YPZ3_RS02780 PF00186 Dihydrofolate reductase YPZ3_RS02800 PF00149 Calcineurin-like phosphoesterase YPZ3_RS02805 PF04379 ApaG domain YPZ3_RS02810 PF00398 Ribosomal RNA adenine dimethylase YPZ3_RS02815 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPZ3_RS02820 PF09312 SurA N-terminal domain YPZ3_RS02820 PF00639 PPIC-type PPIASE domain YPZ3_RS02825 PF03968 OstA-like protein YPZ3_RS02825 PF04453 LPS transport system D YPZ3_RS02830 PF00226 DnaJ domain YPZ3_RS02830 PF05099 Tellurite resistance protein TerB YPZ3_RS02835 PF00849 RNA pseudouridylate synthase YPZ3_RS02850 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPZ3_RS02855 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPZ3_RS02870 PF05947 Type VI secretion system, TssF YPZ3_RS02880 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS02880 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS02880 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS02880 PF17871 AAA lid domain YPZ3_RS02885 PF06715 Gp5 C-terminal repeat (3 copies) YPZ3_RS02885 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_RS02920 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPZ3_RS02925 PF05736 OprF membrane domain YPZ3_RS02925 PF00691 OmpA family YPZ3_RS02930 PF06761 Intracellular multiplication and human macrophage-killing YPZ3_RS02930 PF14331 ImcF-related N-terminal domain YPZ3_RS02930 PF06744 Type VI secretion protein IcmF C-terminal YPZ3_RS02940 PF00271 Helicase conserved C-terminal domain YPZ3_RS02940 PF12137 RNA polymerase recycling family C-terminal YPZ3_RS02940 PF00176 SNF2 family N-terminal domain YPZ3_RS02940 PF18339 RapA N-terminal Tudor like domain 1 YPZ3_RS02940 PF18337 RapA N-terminal Tudor like domain YPZ3_RS02945 PF03104 DNA polymerase family B, exonuclease domain YPZ3_RS02945 PF00136 DNA polymerase family B YPZ3_RS02950 PF09335 SNARE associated Golgi protein YPZ3_RS02955 PF00005 ABC transporter YPZ3_RS02960 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS02975 PF12793 Sugar transport-related sRNA regulator N-term YPZ3_RS02975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_RS02985 PF07690 Major Facilitator Superfamily YPZ3_RS02990 PF01695 IstB-like ATP binding protein YPZ3_RS02995 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS02995 PF00665 Integrase core domain YPZ3_RS03000 PF07690 Major Facilitator Superfamily YPZ3_RS03005 PF00694 Aconitase C-terminal domain YPZ3_RS03010 PF00330 Aconitase family (aconitate hydratase) YPZ3_RS03015 PF00180 Isocitrate/isopropylmalate dehydrogenase YPZ3_RS03020 PF08502 LeuA allosteric (dimerisation) domain YPZ3_RS03020 PF00682 HMGL-like YPZ3_RS03025 PF01797 Transposase IS200 like YPZ3_RS03035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS03035 PF03466 LysR substrate binding domain YPZ3_RS03045 PF00501 AMP-binding enzyme YPZ3_RS03055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_RS03055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_RS03055 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_RS03060 PF10369 Small subunit of acetolactate synthase YPZ3_RS03075 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_RS03075 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS03080 PF06610 L-alanine exporter YPZ3_RS03085 PF02381 MraZ protein, putative antitoxin-like YPZ3_RS03090 PF01795 MraW methylase family YPZ3_RS03095 PF04999 Cell division protein FtsL YPZ3_RS03100 PF03717 Penicillin-binding Protein dimerisation domain YPZ3_RS03100 PF00905 Penicillin binding protein transpeptidase domain YPZ3_RS03105 PF02875 Mur ligase family, glutamate ligase domain YPZ3_RS03105 PF01225 Mur ligase family, catalytic domain YPZ3_RS03105 PF08245 Mur ligase middle domain YPZ3_RS03110 PF01225 Mur ligase family, catalytic domain YPZ3_RS03110 PF02875 Mur ligase family, glutamate ligase domain YPZ3_RS03110 PF08245 Mur ligase middle domain YPZ3_RS03115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPZ3_RS03115 PF00953 Glycosyl transferase family 4 YPZ3_RS03120 PF08245 Mur ligase middle domain YPZ3_RS03120 PF02875 Mur ligase family, glutamate ligase domain YPZ3_RS03125 PF01098 Cell cycle protein YPZ3_RS03130 PF03033 Glycosyltransferase family 28 N-terminal domain YPZ3_RS03130 PF04101 Glycosyltransferase family 28 C-terminal domain YPZ3_RS03135 PF08245 Mur ligase middle domain YPZ3_RS03135 PF02875 Mur ligase family, glutamate ligase domain YPZ3_RS03135 PF01225 Mur ligase family, catalytic domain YPZ3_RS03140 PF01820 D-ala D-ala ligase N-terminus YPZ3_RS03140 PF07478 D-ala D-ala ligase C-terminus YPZ3_RS03145 PF03799 Cell division protein FtsQ YPZ3_RS03145 PF08478 POTRA domain, FtsQ-type YPZ3_RS03150 PF02491 SHS2 domain inserted in FTSA YPZ3_RS03155 PF00091 Tubulin/FtsZ family, GTPase domain YPZ3_RS03155 PF12327 FtsZ family, C-terminal domain YPZ3_RS03160 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPZ3_RS03170 PF06558 Secretion monitor precursor protein (SecM) YPZ3_RS03175 PF07516 SecA Wing and Scaffold domain YPZ3_RS03175 PF01043 SecA preprotein cross-linking domain YPZ3_RS03175 PF07517 SecA DEAD-like domain YPZ3_RS03175 PF02810 SEC-C motif YPZ3_RS03180 PF00293 NUDIX domain YPZ3_RS03185 PF01695 IstB-like ATP binding protein YPZ3_RS03190 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS03190 PF00665 Integrase core domain YPZ3_RS03195 PF13409 Glutathione S-transferase, N-terminal domain YPZ3_RS03200 PF07681 DoxX YPZ3_RS03210 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPZ3_RS03215 PF05957 Bacterial protein of unknown function (DUF883) YPZ3_RS03230 PF13721 SecD export protein N-terminal TM region YPZ3_RS03235 PF09335 SNARE associated Golgi protein YPZ3_RS03245 PF07729 FCD domain YPZ3_RS03245 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS03250 PF07690 Major Facilitator Superfamily YPZ3_RS03260 PF02614 Glucuronate isomerase YPZ3_RS03265 PF08125 Mannitol dehydrogenase C-terminal domain YPZ3_RS03265 PF01232 Mannitol dehydrogenase Rossmann domain YPZ3_RS03270 PF08666 SAF domain YPZ3_RS03270 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPZ3_RS03275 PF10688 Bacterial inner membrane protein YPZ3_RS03285 PF00375 Sodium:dicarboxylate symporter family YPZ3_RS03290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_RS03295 PF01863 Protein of unknown function DUF45 YPZ3_RS03300 PF03797 Autotransporter beta-domain YPZ3_RS03305 PF05175 Methyltransferase small domain YPZ3_RS03310 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS03310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPZ3_RS03315 PF03729 Short repeat of unknown function (DUF308) YPZ3_RS03335 PF00092 von Willebrand factor type A domain YPZ3_RS03345 PF02342 TerD domain YPZ3_RS03350 PF00092 von Willebrand factor type A domain YPZ3_RS03355 PF08479 POTRA domain, ShlB-type YPZ3_RS03355 PF17287 POTRA domain YPZ3_RS03355 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_RS03360 PF04829 Pre-toxin domain with VENN motif YPZ3_RS03360 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS03360 PF05860 haemagglutination activity domain YPZ3_RS03360 PF13332 Hemagglutinin repeat YPZ3_RS03370 PF04829 Pre-toxin domain with VENN motif YPZ3_RS03370 PF13332 Hemagglutinin repeat YPZ3_RS03375 PF13332 Hemagglutinin repeat YPZ3_RS03375 PF04829 Pre-toxin domain with VENN motif YPZ3_RS03385 PF13332 Hemagglutinin repeat YPZ3_RS03385 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS03385 PF04829 Pre-toxin domain with VENN motif YPZ3_RS03385 PF05860 haemagglutination activity domain YPZ3_RS03390 PF04829 Pre-toxin domain with VENN motif YPZ3_RS03390 PF05860 haemagglutination activity domain YPZ3_RS03390 PF13332 Hemagglutinin repeat YPZ3_RS03390 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS03410 PF03459 TOBE domain YPZ3_RS03410 PF17912 MalK OB fold domain YPZ3_RS03410 PF00005 ABC transporter YPZ3_RS03415 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPZ3_RS03420 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS03425 PF01547 Bacterial extracellular solute-binding protein YPZ3_RS03430 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS03435 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS03445 PF14310 Fibronectin type III-like domain YPZ3_RS03445 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPZ3_RS03445 PF00933 Glycosyl hydrolase family 3 N terminal domain YPZ3_RS03455 PF04632 Fusaric acid resistance protein family YPZ3_RS03460 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_RS03460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS03500 PF01042 Endoribonuclease L-PSP YPZ3_RS03520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS03520 PF03466 LysR substrate binding domain YPZ3_RS03580 PF04545 Sigma-70, region 4 YPZ3_RS03580 PF04539 Sigma-70 region 3 YPZ3_RS03580 PF04542 Sigma-70 region 2 YPZ3_RS03580 PF00140 Sigma-70 factor, region 1.2 YPZ3_RS03580 PF03979 Sigma-70 factor, region 1.1 YPZ3_RS03580 PF04546 Sigma-70, non-essential region YPZ3_RS03585 PF08278 DNA primase DnaG DnaB-binding YPZ3_RS03585 PF08275 DNA primase catalytic core, N-terminal domain YPZ3_RS03585 PF01807 CHC2 zinc finger YPZ3_RS03585 PF10410 DnaB-helicase binding domain of primase YPZ3_RS03590 PF01165 Ribosomal protein S21 YPZ3_RS03595 PF00814 Glycoprotease family YPZ3_RS03600 PF02660 Glycerol-3-phosphate acyltransferase YPZ3_RS03605 PF02152 Dihydroneopterin aldolase YPZ3_RS03610 PF02673 Bacitracin resistance protein BacA YPZ3_RS03615 PF01743 Poly A polymerase head domain YPZ3_RS03615 PF12627 Probable RNA and SrmB- binding site of polymerase A YPZ3_RS03615 PF01966 HD domain YPZ3_RS03620 PF08239 Bacterial SH3 domain YPZ3_RS03625 PF01928 CYTH domain YPZ3_RS03630 PF03710 Glutamate-ammonia ligase adenylyltransferase YPZ3_RS03630 PF08335 GlnD PII-uridylyltransferase YPZ3_RS03635 PF01467 Cytidylyltransferase-like YPZ3_RS03635 PF00294 pfkB family carbohydrate kinase YPZ3_RS03640 PF13520 Amino acid permease YPZ3_RS03645 PF04380 Membrane fusogenic activity YPZ3_RS03655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPZ3_RS03660 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPZ3_RS03665 PF03738 Glutathionylspermidine synthase preATP-grasp YPZ3_RS03670 PF06693 Protein of unknown function (DUF1190) YPZ3_RS03680 PF02321 Outer membrane efflux protein YPZ3_RS03685 PF00293 NUDIX domain YPZ3_RS03690 PF06853 Protein of unknown function (DUF1249) YPZ3_RS03695 PF00149 Calcineurin-like phosphoesterase YPZ3_RS03700 PF05728 Uncharacterised protein family (UPF0227) YPZ3_RS03705 PF00986 DNA gyrase B subunit, carboxyl terminus YPZ3_RS03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS03705 PF01751 Toprim domain YPZ3_RS03705 PF00204 DNA gyrase B YPZ3_RS03710 PF03466 LysR substrate binding domain YPZ3_RS03710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS03715 PF02525 Flavodoxin-like fold YPZ3_RS03720 PF03989 DNA gyrase C-terminal domain, beta-propeller YPZ3_RS03720 PF00521 DNA gyrase/topoisomerase IV, subunit A YPZ3_RS03725 PF01553 Acyltransferase YPZ3_RS03730 PF07732 Multicopper oxidase YPZ3_RS03730 PF07731 Multicopper oxidase YPZ3_RS03740 PF00248 Aldo/keto reductase family YPZ3_RS03750 PF00465 Iron-containing alcohol dehydrogenase YPZ3_RS03755 PF12833 Helix-turn-helix domain YPZ3_RS03755 PF06719 AraC-type transcriptional regulator N-terminus YPZ3_RS03760 PF09335 SNARE associated Golgi protein YPZ3_RS03765 PF01053 Cys/Met metabolism PLP-dependent enzyme YPZ3_RS03770 PF01618 MotA/TolQ/ExbB proton channel family YPZ3_RS03775 PF02472 Biopolymer transport protein ExbD/TolR YPZ3_RS03810 PF00437 Type II/IV secretion system protein YPZ3_RS03825 PF13629 Pilus formation protein N terminal region YPZ3_RS03825 PF04972 BON domain YPZ3_RS03825 PF00263 Bacterial type II and III secretion system protein YPZ3_RS03830 PF13629 Pilus formation protein N terminal region YPZ3_RS03830 PF00263 Bacterial type II and III secretion system protein YPZ3_RS03830 PF04972 BON domain YPZ3_RS03845 PF01797 Transposase IS200 like YPZ3_RS03855 PF01797 Transposase IS200 like YPZ3_RS03860 PF13954 PapC N-terminal domain YPZ3_RS03860 PF13953 PapC C-terminal domain YPZ3_RS03860 PF00577 Outer membrane usher protein YPZ3_RS03865 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_RS03865 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS03870 PF00419 Fimbrial protein YPZ3_RS03870 PF09222 Fimbrial adhesin F17-AG, lectin domain YPZ3_RS03875 PF01497 Periplasmic binding protein YPZ3_RS03895 PF01312 FlhB HrpN YscU SpaS Family YPZ3_RS03900 PF01311 Bacterial export proteins, family 1 YPZ3_RS03905 PF01313 Bacterial export proteins, family 3 YPZ3_RS03910 PF00813 FliP family YPZ3_RS03915 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_RS03925 PF02954 Bacterial regulatory protein, Fis family YPZ3_RS03925 PF00072 Response regulator receiver domain YPZ3_RS03925 PF00158 Sigma-54 interaction domain YPZ3_RS03930 PF02049 Flagellar hook-basal body complex protein FliE YPZ3_RS03935 PF08345 Flagellar M-ring protein C-terminal YPZ3_RS03935 PF01514 Secretory protein of YscJ/FliF family YPZ3_RS03950 PF18269 T3SS EscN ATPase C-terminal domain YPZ3_RS03950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_RS03970 PF13144 Chaperone for flagella basal body P-ring formation YPZ3_RS03975 PF00460 Flagella basal body rod protein YPZ3_RS03980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS03980 PF00460 Flagella basal body rod protein YPZ3_RS03985 PF13860 FlgD Ig-like domain YPZ3_RS03985 PF03963 Flagellar hook capping protein - N-terminal region YPZ3_RS03985 PF13861 FlgD Tudor-like domain YPZ3_RS03990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS03990 PF07559 Flagellar basal body protein FlaE YPZ3_RS03990 PF00460 Flagella basal body rod protein YPZ3_RS04010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS04010 PF00460 Flagella basal body rod protein YPZ3_RS04015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS04015 PF00460 Flagella basal body rod protein YPZ3_RS04020 PF02107 Flagellar L-ring protein YPZ3_RS04035 PF00460 Flagella basal body rod protein YPZ3_RS04035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS04055 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS04055 PF18500 CadC C-terminal domain 1 YPZ3_RS04060 PF00700 Bacterial flagellin C-terminal helical region YPZ3_RS04060 PF00669 Bacterial flagellin N-terminal helical region YPZ3_RS04065 PF00700 Bacterial flagellin C-terminal helical region YPZ3_RS04065 PF00669 Bacterial flagellin N-terminal helical region YPZ3_RS04070 PF00700 Bacterial flagellin C-terminal helical region YPZ3_RS04070 PF00669 Bacterial flagellin N-terminal helical region YPZ3_RS04075 PF07196 Flagellin hook IN motif YPZ3_RS04075 PF07195 Flagellar hook-associated protein 2 C-terminus YPZ3_RS04075 PF02465 Flagellar hook-associated protein 2 N-terminus YPZ3_RS04100 PF04542 Sigma-70 region 2 YPZ3_RS04100 PF04545 Sigma-70, region 4 YPZ3_RS04105 PF01618 MotA/TolQ/ExbB proton channel family YPZ3_RS04110 PF00691 OmpA family YPZ3_RS04110 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPZ3_RS04150 PF13276 HTH-like domain YPZ3_RS04150 PF00665 Integrase core domain YPZ3_RS04150 PF13333 Integrase core domain YPZ3_RS04155 PF00563 EAL domain YPZ3_RS04155 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_RS04155 PF08447 PAS fold YPZ3_RS04155 PF08448 PAS fold YPZ3_RS04165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS04165 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_RS04170 PF00873 AcrB/AcrD/AcrF family YPZ3_RS04175 PF07906 ShET2 enterotoxin, N-terminal region YPZ3_RS04185 PF03797 Autotransporter beta-domain YPZ3_RS04190 PF14496 C-terminal novel E3 ligase, LRR-interacting YPZ3_RS04190 PF12468 Type III secretion system leucine rich repeat protein YPZ3_RS04195 PF14496 C-terminal novel E3 ligase, LRR-interacting YPZ3_RS04195 PF12468 Type III secretion system leucine rich repeat protein YPZ3_RS04195 PF14496 C-terminal novel E3 ligase, LRR-interacting YPZ3_RS04195 PF12468 Type III secretion system leucine rich repeat protein YPZ3_RS04200 PF14496 C-terminal novel E3 ligase, LRR-interacting YPZ3_RS04200 PF12468 Type III secretion system leucine rich repeat protein YPZ3_RS04205 PF03806 AbgT putative transporter family YPZ3_RS04210 PF07687 Peptidase dimerisation domain YPZ3_RS04210 PF01546 Peptidase family M20/M25/M40 YPZ3_RS04215 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS04215 PF00593 TonB dependent receptor YPZ3_RS04225 PF00665 Integrase core domain YPZ3_RS04225 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS04230 PF01695 IstB-like ATP binding protein YPZ3_RS04235 PF00668 Condensation domain YPZ3_RS04235 PF08242 Methyltransferase domain YPZ3_RS04235 PF00550 Phosphopantetheine attachment site YPZ3_RS04235 PF00501 AMP-binding enzyme YPZ3_RS04240 PF00501 AMP-binding enzyme YPZ3_RS04240 PF13193 AMP-binding enzyme C-terminal domain YPZ3_RS04240 PF00668 Condensation domain YPZ3_RS04245 PF00550 Phosphopantetheine attachment site YPZ3_RS04245 PF08242 Methyltransferase domain YPZ3_RS04245 PF00668 Condensation domain YPZ3_RS04245 PF00501 AMP-binding enzyme YPZ3_RS04260 PF00975 Thioesterase domain YPZ3_RS04270 PF00005 ABC transporter YPZ3_RS04270 PF04954 Siderophore-interacting protein YPZ3_RS04270 PF08021 Siderophore-interacting FAD-binding domain YPZ3_RS04270 PF00664 ABC transporter transmembrane region YPZ3_RS04275 PF00005 ABC transporter YPZ3_RS04275 PF00664 ABC transporter transmembrane region YPZ3_RS04290 PF02447 GntP family permease YPZ3_RS04300 PF12951 Passenger-associated-transport-repeat YPZ3_RS04305 PF12951 Passenger-associated-transport-repeat YPZ3_RS04310 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_RS04320 PF03527 RHS protein YPZ3_RS04320 PF05593 RHS Repeat YPZ3_RS04335 PF00939 Sodium:sulfate symporter transmembrane region YPZ3_RS04340 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS04350 PF13276 HTH-like domain YPZ3_RS04350 PF00665 Integrase core domain YPZ3_RS04350 PF13333 Integrase core domain YPZ3_RS04365 PF00593 TonB dependent receptor YPZ3_RS04365 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS04370 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPZ3_RS04375 PF04183 IucA / IucC family YPZ3_RS04375 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_RS04385 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_RS04385 PF04183 IucA / IucC family YPZ3_RS04390 PF04183 IucA / IucC family YPZ3_RS04390 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_RS04410 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS04410 PF03472 Autoinducer binding domain YPZ3_RS04415 PF00765 Autoinducer synthase YPZ3_RS04420 PF02517 CPBP intramembrane metalloprotease YPZ3_RS04430 PF03811 InsA N-terminal domain YPZ3_RS04430 PF12759 InsA C-terminal domain YPZ3_RS04450 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPZ3_RS04465 PF00691 OmpA family YPZ3_RS04465 PF05736 OprF membrane domain YPZ3_RS04475 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS04475 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS04475 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS04475 PF17871 AAA lid domain YPZ3_RS04480 PF13296 Putative type VI secretion system Rhs element Vgr YPZ3_RS04480 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPZ3_RS04480 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_RS04495 PF12759 InsA C-terminal domain YPZ3_RS04495 PF03811 InsA N-terminal domain YPZ3_RS04500 PF03400 IS1 transposase YPZ3_RS04520 PF01276 Orn/Lys/Arg decarboxylase, major domain YPZ3_RS04520 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPZ3_RS04520 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPZ3_RS04525 PF13407 Periplasmic binding protein domain YPZ3_RS04530 PF00005 ABC transporter YPZ3_RS04535 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS04540 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS04550 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPZ3_RS04550 PF01464 Transglycosylase SLT domain YPZ3_RS04555 PF04362 Bacterial Fe(2+) trafficking YPZ3_RS04560 PF14815 NUDIX domain YPZ3_RS04560 PF00730 HhH-GPD superfamily base excision DNA repair protein YPZ3_RS04560 PF00633 Helix-hairpin-helix motif YPZ3_RS04560 PF10576 Iron-sulfur binding domain of endonuclease III YPZ3_RS04565 PF02390 Putative methyltransferase YPZ3_RS04570 PF04320 Protein with unknown function (DUF469) YPZ3_RS04575 PF04960 Glutaminase YPZ3_RS04580 PF11101 Protein of unknown function (DUF2884) YPZ3_RS04585 PF11101 Protein of unknown function (DUF2884) YPZ3_RS04590 PF11713 Peptidase C80 family YPZ3_RS04590 PF07634 RtxA repeat YPZ3_RS04590 PF16671 Actin cross-linking domain YPZ3_RS04590 PF12146 Serine aminopeptidase, S33 YPZ3_RS04590 PF11647 Membrane Localization Domain YPZ3_RS04595 PF06969 HemN C-terminal domain YPZ3_RS04595 PF04055 Radical SAM superfamily YPZ3_RS04600 PF01725 Ham1 family YPZ3_RS04605 PF02594 Uncharacterised ACR, YggU family COG1872 YPZ3_RS04610 PF02325 YGGT family YPZ3_RS04615 PF03807 NADP oxidoreductase coenzyme F420-dependent YPZ3_RS04615 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPZ3_RS04620 PF01168 Alanine racemase, N-terminal domain YPZ3_RS04625 PF00437 Type II/IV secretion system protein YPZ3_RS04630 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPZ3_RS04635 PF00795 Carbon-nitrogen hydrolase YPZ3_RS04640 PF03652 Holliday junction resolvase YPZ3_RS04645 PF02622 Uncharacterized ACR, COG1678 YPZ3_RS04650 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPZ3_RS04650 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPZ3_RS04655 PF04452 RNA methyltransferase YPZ3_RS04660 PF04231 Endonuclease I YPZ3_RS04665 PF10263 SprT-like family YPZ3_RS04665 PF17283 SprT-like zinc ribbon domain YPZ3_RS04670 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPZ3_RS04670 PF02772 S-adenosylmethionine synthetase, central domain YPZ3_RS04670 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPZ3_RS04675 PF17810 Arginine decarboxylase helical bundle domain YPZ3_RS04675 PF17944 Arginine decarboxylase C-terminal helical extension YPZ3_RS04675 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPZ3_RS04680 PF00355 Rieske [2Fe-2S] domain YPZ3_RS04685 PF01435 Peptidase family M48 YPZ3_RS04690 PF02780 Transketolase, C-terminal domain YPZ3_RS04690 PF00456 Transketolase, thiamine diphosphate binding domain YPZ3_RS04690 PF02779 Transketolase, pyrimidine binding domain YPZ3_RS04700 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPZ3_RS04700 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPZ3_RS04705 PF00162 Phosphoglycerate kinase YPZ3_RS04710 PF01116 Fructose-bisphosphate aldolase class-II YPZ3_RS04720 PF00924 Mechanosensitive ion channel YPZ3_RS04720 PF05552 Conserved TM helix YPZ3_RS04725 PF01810 LysE type translocator YPZ3_RS04730 PF04402 Protein of unknown function (DUF541) YPZ3_RS04735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS04735 PF03466 LysR substrate binding domain YPZ3_RS04740 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPZ3_RS04745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_RS04745 PF01842 ACT domain YPZ3_RS04745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_RS04750 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPZ3_RS04755 PF05164 Cell division protein ZapA YPZ3_RS04760 PF03695 Uncharacterised protein family (UPF0149) YPZ3_RS04765 PF05195 Aminopeptidase P, N-terminal domain YPZ3_RS04765 PF00557 Metallopeptidase family M24 YPZ3_RS04770 PF01494 FAD binding domain YPZ3_RS04775 PF01494 FAD binding domain YPZ3_RS04780 PF01571 Aminomethyltransferase folate-binding domain YPZ3_RS04780 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPZ3_RS04785 PF01597 Glycine cleavage H-protein YPZ3_RS04790 PF02347 Glycine cleavage system P-protein YPZ3_RS04805 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS04805 PF03895 YadA-like membrane anchor domain YPZ3_RS04805 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_RS04805 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_RS04815 PF03006 Haemolysin-III related YPZ3_RS04825 PF01571 Aminomethyltransferase folate-binding domain YPZ3_RS04830 PF03937 Flavinator of succinate dehydrogenase YPZ3_RS04835 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPZ3_RS04840 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS04840 PF00072 Response regulator receiver domain YPZ3_RS04845 PF00672 HAMP domain YPZ3_RS04845 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS04850 PF06123 Inner membrane protein CreD YPZ3_RS04855 PF00258 Flavodoxin YPZ3_RS04860 PF00589 Phage integrase family YPZ3_RS04860 PF02899 Phage integrase, N-terminal SAM-like domain YPZ3_RS04865 PF13098 Thioredoxin-like domain YPZ3_RS04865 PF10411 Disulfide bond isomerase protein N-terminus YPZ3_RS04870 PF02272 DHHA1 domain YPZ3_RS04870 PF01368 DHH family YPZ3_RS04870 PF17768 RecJ OB domain YPZ3_RS04875 PF03462 PCRF domain YPZ3_RS04875 PF00472 RF-1 domain YPZ3_RS04880 PF01336 OB-fold nucleic acid binding domain YPZ3_RS04880 PF00152 tRNA synthetases class II (D, K and N) YPZ3_RS04890 PF00589 Phage integrase family YPZ3_RS04890 PF13356 Arm DNA-binding domain YPZ3_RS04890 PF14659 Phage integrase, N-terminal SAM-like domain YPZ3_RS04915 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPZ3_RS04920 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPZ3_RS05015 PF03551 Transcriptional regulator PadR-like family YPZ3_RS05020 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPZ3_RS05030 PF13407 Periplasmic binding protein domain YPZ3_RS05035 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS05040 PF00005 ABC transporter YPZ3_RS05045 PF00005 ABC transporter YPZ3_RS05045 PF17912 MalK OB fold domain YPZ3_RS05050 PF13416 Bacterial extracellular solute-binding protein YPZ3_RS05055 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS05060 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS05065 PF07745 Glycosyl hydrolase family 53 YPZ3_RS05070 PF02449 Beta-galactosidase YPZ3_RS05070 PF08532 Beta-galactosidase trimerisation domain YPZ3_RS05070 PF08533 Beta-galactosidase C-terminal domain YPZ3_RS05075 PF02378 Phosphotransferase system, EIIC YPZ3_RS05075 PF00367 phosphotransferase system, EIIB YPZ3_RS05080 PF02264 LamB porin YPZ3_RS05085 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS05090 PF17137 Domain of unknown function (DUF5110) YPZ3_RS05090 PF13802 Galactose mutarotase-like YPZ3_RS05090 PF01055 Glycosyl hydrolases family 31 YPZ3_RS05090 PF16338 Domain of unknown function (DUF4968) YPZ3_RS05095 PF07690 Major Facilitator Superfamily YPZ3_RS05100 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS05115 PF01116 Fructose-bisphosphate aldolase class-II YPZ3_RS05125 PF00884 Sulfatase YPZ3_RS05130 PF13186 Iron-sulfur cluster-binding domain YPZ3_RS05130 PF04055 Radical SAM superfamily YPZ3_RS05135 PF07470 Glycosyl Hydrolase Family 88 YPZ3_RS05145 PF01979 Amidohydrolase family YPZ3_RS05150 PF03610 PTS system fructose IIA component YPZ3_RS05155 PF03613 PTS system mannose/fructose/sorbose family IID component YPZ3_RS05160 PF03609 PTS system sorbose-specific iic component YPZ3_RS05165 PF03830 PTS system sorbose subfamily IIB component YPZ3_RS05170 PF01380 SIS domain YPZ3_RS05175 PF08013 Tagatose 6 phosphate kinase YPZ3_RS05180 PF08220 DeoR-like helix-turn-helix domain YPZ3_RS05180 PF00455 DeoR C terminal sensor domain YPZ3_RS05185 PF00884 Sulfatase YPZ3_RS05190 PF01797 Transposase IS200 like YPZ3_RS05195 PF00665 Integrase core domain YPZ3_RS05195 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS05200 PF01695 IstB-like ATP binding protein YPZ3_RS05205 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPZ3_RS05205 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPZ3_RS05205 PF09093 Lyase, catalytic YPZ3_RS05205 PF09092 Lyase, N terminal YPZ3_RS05230 PF00484 Carbonic anhydrase YPZ3_RS05245 PF00263 Bacterial type II and III secretion system protein YPZ3_RS05245 PF03958 Bacterial type II/III secretion system short domain YPZ3_RS05250 PF00437 Type II/IV secretion system protein YPZ3_RS05260 PF00482 Type II secretion system (T2SS), protein F YPZ3_RS05265 PF08334 Type II secretion system (T2SS), protein G YPZ3_RS05265 PF07963 Prokaryotic N-terminal methylation motif YPZ3_RS05280 PF11612 Type II secretion system (T2SS), protein J YPZ3_RS05280 PF07963 Prokaryotic N-terminal methylation motif YPZ3_RS05300 PF06750 Bacterial Peptidase A24 N-terminal domain YPZ3_RS05300 PF01478 Type IV leader peptidase family YPZ3_RS05320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_RS05320 PF00672 HAMP domain YPZ3_RS05320 PF02203 Tar ligand binding domain homologue YPZ3_RS05335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS05335 PF03466 LysR substrate binding domain YPZ3_RS05340 PF07690 Major Facilitator Superfamily YPZ3_RS05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS05345 PF03466 LysR substrate binding domain YPZ3_RS05350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPZ3_RS05350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPZ3_RS05355 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS05360 PF01568 Molydopterin dinucleotide binding domain YPZ3_RS05360 PF00384 Molybdopterin oxidoreductase YPZ3_RS05365 PF01553 Acyltransferase YPZ3_RS05365 PF13193 AMP-binding enzyme C-terminal domain YPZ3_RS05365 PF00501 AMP-binding enzyme YPZ3_RS05370 PF07690 Major Facilitator Superfamily YPZ3_RS05385 PF00248 Aldo/keto reductase family YPZ3_RS05390 PF02976 DNA mismatch repair enzyme MutH YPZ3_RS05405 PF00293 NUDIX domain YPZ3_RS05410 PF02896 PEP-utilising enzyme, TIM barrel domain YPZ3_RS05410 PF00391 PEP-utilising enzyme, mobile domain YPZ3_RS05410 PF05524 PEP-utilising enzyme, N-terminal YPZ3_RS05410 PF01590 GAF domain YPZ3_RS05415 PF01790 Prolipoprotein diacylglyceryl transferase YPZ3_RS05420 PF00303 Thymidylate synthase YPZ3_RS05435 PF00665 Integrase core domain YPZ3_RS05435 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS05440 PF00665 Integrase core domain YPZ3_RS05440 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS05445 PF01695 IstB-like ATP binding protein YPZ3_RS05465 PF17946 RecC C-terminal domain YPZ3_RS05470 PF05193 Peptidase M16 inactive domain YPZ3_RS05470 PF16187 Middle or third domain of peptidase_M16 YPZ3_RS05470 PF00675 Insulinase (Peptidase family M16) YPZ3_RS05475 PF00580 UvrD/REP helicase N-terminal domain YPZ3_RS05475 PF13361 UvrD-like helicase C-terminal domain YPZ3_RS05475 PF12705 PD-(D/E)XK nuclease superfamily YPZ3_RS05480 PF13538 UvrD-like helicase C-terminal domain YPZ3_RS05485 PF00696 Amino acid kinase family YPZ3_RS05485 PF00583 Acetyltransferase (GNAT) family YPZ3_RS05490 PF01520 N-acetylmuramoyl-L-alanine amidase YPZ3_RS05490 PF11741 AMIN domain YPZ3_RS05505 PF06725 3D domain YPZ3_RS05505 PF03562 MltA specific insert domain YPZ3_RS05510 PF00899 ThiF family YPZ3_RS05515 PF02657 Fe-S metabolism associated domain YPZ3_RS05520 PF00266 Aminotransferase class-V YPZ3_RS05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS05525 PF03466 LysR substrate binding domain YPZ3_RS05530 PF04241 Protein of unknown function (DUF423) YPZ3_RS05535 PF01728 FtsJ-like methyltransferase YPZ3_RS05535 PF18125 RlmM ferredoxin-like domain YPZ3_RS05540 PF01367 5'-3' exonuclease, C-terminal SAM fold YPZ3_RS05540 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPZ3_RS05545 PF11892 Domain of unknown function (DUF3412) YPZ3_RS05545 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPZ3_RS05545 PF03641 Possible lysine decarboxylase YPZ3_RS05550 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPZ3_RS05550 PF14489 QueF-like protein YPZ3_RS05555 PF07348 Syd protein (SUKH-2) YPZ3_RS05560 PF01797 Transposase IS200 like YPZ3_RS05565 PF04287 tRNA pseudouridine synthase C YPZ3_RS05570 PF00849 RNA pseudouridylate synthase YPZ3_RS05575 PF00258 Flavodoxin YPZ3_RS05580 PF11944 Protein of unknown function (DUF3461) YPZ3_RS05585 PF14602 Hexapeptide repeat of succinyl-transferase YPZ3_RS05585 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPZ3_RS05585 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_RS05590 PF01842 ACT domain YPZ3_RS05590 PF01966 HD domain YPZ3_RS05590 PF01909 Nucleotidyltransferase domain YPZ3_RS05590 PF08335 GlnD PII-uridylyltransferase YPZ3_RS05595 PF00557 Metallopeptidase family M24 YPZ3_RS05600 PF00318 Ribosomal protein S2 YPZ3_RS05605 PF00889 Elongation factor TS YPZ3_RS05610 PF00696 Amino acid kinase family YPZ3_RS05615 PF01765 Ribosome recycling factor YPZ3_RS05620 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPZ3_RS05620 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPZ3_RS05620 PF13288 DXP reductoisomerase C-terminal domain YPZ3_RS05625 PF01255 Putative undecaprenyl diphosphate synthase YPZ3_RS05635 PF02163 Peptidase family M50 YPZ3_RS05635 PF17820 PDZ domain YPZ3_RS05640 PF07244 Surface antigen variable number repeat YPZ3_RS05640 PF01103 Surface antigen YPZ3_RS05645 PF03938 Outer membrane protein (OmpH-like) YPZ3_RS05650 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_RS05650 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPZ3_RS05655 PF07977 FabA-like domain YPZ3_RS05660 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_RS05660 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPZ3_RS05665 PF02684 Lipid-A-disaccharide synthetase YPZ3_RS05670 PF01351 Ribonuclease HII YPZ3_RS05675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPZ3_RS05675 PF14579 Helix-hairpin-helix motif YPZ3_RS05675 PF02811 PHP domain YPZ3_RS05675 PF01336 OB-fold nucleic acid binding domain YPZ3_RS05675 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPZ3_RS05680 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPZ3_RS05685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPZ3_RS05690 PF11734 TilS substrate C-terminal domain YPZ3_RS05690 PF01171 PP-loop family YPZ3_RS05690 PF09179 TilS substrate binding domain YPZ3_RS05695 PF00034 Cytochrome c YPZ3_RS05700 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPZ3_RS05705 PF06786 Uncharacterised protein family (UPF0253) YPZ3_RS05710 PF07152 YaeQ protein YPZ3_RS05715 PF00472 RF-1 domain YPZ3_RS05720 PF17185 NlpE C-terminal OB domain YPZ3_RS05720 PF04170 NlpE N-terminal domain YPZ3_RS05725 PF04073 Aminoacyl-tRNA editing domain YPZ3_RS05725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPZ3_RS05725 PF03129 Anticodon binding domain YPZ3_RS05730 PF18389 TrmO C-terminal domain YPZ3_RS05730 PF01980 tRNA-methyltransferase O YPZ3_RS05735 PF16358 RcsF lipoprotein YPZ3_RS05740 PF03180 NLPA lipoprotein YPZ3_RS05745 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS05750 PF00005 ABC transporter YPZ3_RS05750 PF09383 NIL domain YPZ3_RS05790 PF00248 Aldo/keto reductase family YPZ3_RS05800 PF03372 Endonuclease/Exonuclease/phosphatase family YPZ3_RS05805 PF01476 LysM domain YPZ3_RS05805 PF01464 Transglycosylase SLT domain YPZ3_RS05810 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPZ3_RS05810 PF00753 Metallo-beta-lactamase superfamily YPZ3_RS05820 PF00075 RNase H YPZ3_RS05825 PF00929 Exonuclease YPZ3_RS05835 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPZ3_RS05850 PF01695 IstB-like ATP binding protein YPZ3_RS05855 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS05855 PF00665 Integrase core domain YPZ3_RS05865 PF05973 Phage derived protein Gp49-like (DUF891) YPZ3_RS05925 PF00589 Phage integrase family YPZ3_RS05925 PF13356 Arm DNA-binding domain YPZ3_RS05940 PF01668 SmpB protein YPZ3_RS05945 PF03364 Polyketide cyclase / dehydrase and lipid transport YPZ3_RS05950 PF03658 RnfH family Ubiquitin YPZ3_RS05955 PF04355 SmpA / OmlA family YPZ3_RS05960 PF02463 RecF/RecN/SMC N terminal domain YPZ3_RS05965 PF01513 ATP-NAD kinase YPZ3_RS05970 PF01025 GrpE YPZ3_RS05975 PF00285 Citrate synthase, C-terminal domain YPZ3_RS05980 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPZ3_RS05985 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPZ3_RS05990 PF02910 Fumarate reductase flavoprotein C-term YPZ3_RS05990 PF00890 FAD binding domain YPZ3_RS05995 PF13085 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS06000 PF16870 2-oxoglutarate dehydrogenase C-terminal YPZ3_RS06000 PF02779 Transketolase, pyrimidine binding domain YPZ3_RS06000 PF00676 Dehydrogenase E1 component YPZ3_RS06000 PF16078 2-oxoglutarate dehydrogenase N-terminus YPZ3_RS06005 PF02817 e3 binding domain YPZ3_RS06005 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPZ3_RS06005 PF00364 Biotin-requiring enzyme YPZ3_RS06010 PF08442 ATP-grasp domain YPZ3_RS06010 PF00549 CoA-ligase YPZ3_RS06015 PF02629 CoA binding domain YPZ3_RS06015 PF00549 CoA-ligase YPZ3_RS06020 PF01654 Cytochrome bd terminal oxidase subunit I YPZ3_RS06025 PF02322 Cytochrome bd terminal oxidase subunit II YPZ3_RS06030 PF08173 Membrane bound YbgT-like protein YPZ3_RS06035 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPZ3_RS06040 PF03061 Thioesterase superfamily YPZ3_RS06045 PF01618 MotA/TolQ/ExbB proton channel family YPZ3_RS06050 PF02472 Biopolymer transport protein ExbD/TolR YPZ3_RS06055 PF06519 TolA C-terminal YPZ3_RS06055 PF06519 TolA C-terminal YPZ3_RS06060 PF04052 TolB amino-terminal domain YPZ3_RS06060 PF07676 WD40-like Beta Propeller Repeat YPZ3_RS06065 PF00691 OmpA family YPZ3_RS06070 PF13174 Tetratricopeptide repeat YPZ3_RS06070 PF16331 TolA binding protein trimerisation YPZ3_RS06090 PF02445 Quinolinate synthetase A protein YPZ3_RS06095 PF04973 Nicotinamide mononucleotide transporter YPZ3_RS06100 PF01545 Cation efflux family YPZ3_RS06105 PF00793 DAHP synthetase I family YPZ3_RS06110 PF01695 IstB-like ATP binding protein YPZ3_RS06115 PF00665 Integrase core domain YPZ3_RS06115 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS06120 PF00793 DAHP synthetase I family YPZ3_RS06125 PF00300 Histidine phosphatase superfamily (branch 1) YPZ3_RS06135 PF01263 Aldose 1-epimerase YPZ3_RS06145 PF00288 GHMP kinases N terminal domain YPZ3_RS06145 PF08544 GHMP kinases C terminal YPZ3_RS06145 PF10509 Galactokinase galactose-binding signature YPZ3_RS06150 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPZ3_RS06150 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPZ3_RS06155 PF16363 GDP-mannose 4,6 dehydratase YPZ3_RS06170 PF00005 ABC transporter YPZ3_RS06175 PF03459 TOBE domain YPZ3_RS06175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS06180 PF10766 Multidrug efflux pump-associated protein AcrZ YPZ3_RS06190 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS06195 PF03459 TOBE domain YPZ3_RS06195 PF00005 ABC transporter YPZ3_RS06205 PF10282 Lactonase, 7-bladed beta-propeller YPZ3_RS06210 PF00202 Aminotransferase class-III YPZ3_RS06215 PF04055 Radical SAM superfamily YPZ3_RS06215 PF06968 Biotin and Thiamin Synthesis associated domain YPZ3_RS06220 PF00155 Aminotransferase class I and II YPZ3_RS06225 PF08241 Methyltransferase domain YPZ3_RS06235 PF09383 NIL domain YPZ3_RS06235 PF00005 ABC transporter YPZ3_RS06240 PF00271 Helicase conserved C-terminal domain YPZ3_RS06240 PF12344 Ultra-violet resistance protein B YPZ3_RS06240 PF17757 UvrB interaction domain YPZ3_RS06240 PF02151 UvrB/uvrC motif YPZ3_RS06240 PF04851 Type III restriction enzyme, res subunit YPZ3_RS06245 PF09905 DNA-binding protein VF530 YPZ3_RS06250 PF01933 Uncharacterised protein family UPF0052 YPZ3_RS06260 PF06463 Molybdenum Cofactor Synthesis C YPZ3_RS06260 PF04055 Radical SAM superfamily YPZ3_RS06265 PF01967 MoaC family YPZ3_RS06270 PF02597 ThiS family YPZ3_RS06275 PF02391 MoaE protein YPZ3_RS06280 PF01027 Inhibitor of apoptosis-promoting Bax1 YPZ3_RS06290 PF01797 Transposase IS200 like YPZ3_RS06295 PF05199 GMC oxidoreductase YPZ3_RS06295 PF00732 GMC oxidoreductase YPZ3_RS06300 PF00171 Aldehyde dehydrogenase family YPZ3_RS06305 PF13977 BetI-type transcriptional repressor, C-terminal YPZ3_RS06305 PF00440 Bacterial regulatory proteins, tetR family YPZ3_RS06310 PF02028 BCCT, betaine/carnitine/choline family transporter YPZ3_RS06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS06315 PF03466 LysR substrate binding domain YPZ3_RS06325 PF01048 Phosphorylase superfamily YPZ3_RS06330 PF03825 Nucleoside H+ symporter YPZ3_RS06340 PF03825 Nucleoside H+ symporter YPZ3_RS06345 PF13801 Heavy-metal resistance YPZ3_RS06350 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS06355 PF00072 Response regulator receiver domain YPZ3_RS06355 PF00158 Sigma-54 interaction domain YPZ3_RS06355 PF02954 Bacterial regulatory protein, Fis family YPZ3_RS06360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPZ3_RS06365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS06365 PF03466 LysR substrate binding domain YPZ3_RS06390 PF00005 ABC transporter YPZ3_RS06395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS06400 PF09209 Tetracyclin repressor-like, C-terminal domain YPZ3_RS06400 PF00440 Bacterial regulatory proteins, tetR family YPZ3_RS06405 PF00270 DEAD/DEAH box helicase YPZ3_RS06405 PF00271 Helicase conserved C-terminal domain YPZ3_RS06410 PF13358 DDE superfamily endonuclease YPZ3_RS06410 PF13592 Winged helix-turn helix YPZ3_RS06415 PF13592 Winged helix-turn helix YPZ3_RS06415 PF13358 DDE superfamily endonuclease YPZ3_RS06430 PF00872 Transposase, Mutator family YPZ3_RS06435 PF02371 Transposase IS116/IS110/IS902 family YPZ3_RS06435 PF01548 Transposase YPZ3_RS06440 PF00271 Helicase conserved C-terminal domain YPZ3_RS06440 PF00270 DEAD/DEAH box helicase YPZ3_RS06460 PF01207 Dihydrouridine synthase (Dus) YPZ3_RS06470 PF00768 D-alanyl-D-alanine carboxypeptidase YPZ3_RS06475 PF01565 FAD binding domain YPZ3_RS06475 PF09330 D-lactate dehydrogenase, membrane binding YPZ3_RS06480 PF01928 CYTH domain YPZ3_RS06485 PF01844 HNH endonuclease YPZ3_RS06495 PF04226 Transglycosylase associated protein YPZ3_RS06500 PF00005 ABC transporter YPZ3_RS06510 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS06515 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS06520 PF07308 Protein of unknown function (DUF1456) YPZ3_RS06525 PF13188 PAS domain YPZ3_RS06525 PF00158 Sigma-54 interaction domain YPZ3_RS06525 PF02954 Bacterial regulatory protein, Fis family YPZ3_RS06530 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS06535 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS06540 PF00005 ABC transporter YPZ3_RS06545 PF00005 ABC transporter YPZ3_RS06560 PF00581 Rhodanese-like domain YPZ3_RS06565 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPZ3_RS06570 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPZ3_RS06575 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS06580 PF00005 ABC transporter YPZ3_RS06585 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS06590 PF13520 Amino acid permease YPZ3_RS06595 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPZ3_RS06595 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPZ3_RS06595 PF01276 Orn/Lys/Arg decarboxylase, major domain YPZ3_RS06605 PF00892 EamA-like transporter family YPZ3_RS06610 PF00267 Gram-negative porin YPZ3_RS06615 PF13307 Helicase C-terminal domain YPZ3_RS06615 PF06733 DEAD_2 YPZ3_RS06620 PF06628 Catalase-related immune-responsive YPZ3_RS06620 PF00199 Catalase YPZ3_RS06625 PF07437 YfaZ precursor YPZ3_RS06630 PF03222 Tryptophan/tyrosine permease family YPZ3_RS06635 PF00994 Probable molybdopterin binding domain YPZ3_RS06640 PF03974 Ecotin YPZ3_RS06645 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS06650 PF00268 Ribonucleotide reductase, small chain YPZ3_RS06655 PF03477 ATP cone domain YPZ3_RS06655 PF02867 Ribonucleotide reductase, barrel domain YPZ3_RS06655 PF00317 Ribonucleotide reductase, all-alpha domain YPZ3_RS06665 PF03989 DNA gyrase C-terminal domain, beta-propeller YPZ3_RS06665 PF00521 DNA gyrase/topoisomerase IV, subunit A YPZ3_RS06675 PF00072 Response regulator receiver domain YPZ3_RS06675 PF09456 RcsC Alpha-Beta-Loop (ABL) YPZ3_RS06675 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS06680 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS06680 PF00072 Response regulator receiver domain YPZ3_RS06685 PF01627 Hpt domain YPZ3_RS06685 PF16359 RcsD-ABL domain YPZ3_RS06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS06690 PF16359 RcsD-ABL domain YPZ3_RS06690 PF01627 Hpt domain YPZ3_RS06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS06695 PF07690 Major Facilitator Superfamily YPZ3_RS06705 PF00267 Gram-negative porin YPZ3_RS06725 PF00144 Beta-lactamase YPZ3_RS06740 PF12706 Beta-lactamase superfamily domain YPZ3_RS06745 PF02743 Cache domain YPZ3_RS06745 PF00672 HAMP domain YPZ3_RS06745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_RS06750 PF01278 Omptin family YPZ3_RS06755 PF06183 DinI-like family YPZ3_RS06760 PF00717 Peptidase S24-like YPZ3_RS06760 PF01381 Helix-turn-helix YPZ3_RS06765 PF06530 Phage antitermination protein Q YPZ3_RS06770 PF17042 Nucleotide-binding C-terminal domain YPZ3_RS06770 PF07005 Sugar-binding N-terminal domain YPZ3_RS06780 PF08220 DeoR-like helix-turn-helix domain YPZ3_RS06780 PF00455 DeoR C terminal sensor domain YPZ3_RS06785 PF01261 Xylose isomerase-like TIM barrel YPZ3_RS06805 PF17482 Phage tail sheath C-terminal domain YPZ3_RS06805 PF04984 Phage tail sheath protein subtilisin-like domain YPZ3_RS06845 PF04865 Baseplate J-like protein YPZ3_RS06860 PF07484 Phage Tail Collar Domain YPZ3_RS06865 PF01380 SIS domain YPZ3_RS06865 PF01418 Helix-turn-helix domain, rpiR family YPZ3_RS06870 PF00232 Glycosyl hydrolase family 1 YPZ3_RS06890 PF05638 Type VI secretion system effector, Hcp YPZ3_RS06905 PF11893 Domain of unknown function (DUF3413) YPZ3_RS06905 PF00884 Sulfatase YPZ3_RS06910 PF07208 Protein of unknown function (DUF1414) YPZ3_RS06915 PF04245 37-kD nucleoid-associated bacterial protein YPZ3_RS06925 PF01797 Transposase IS200 like YPZ3_RS06930 PF01386 Ribosomal L25p family YPZ3_RS06935 PF04851 Type III restriction enzyme, res subunit YPZ3_RS06935 PF00271 Helicase conserved C-terminal domain YPZ3_RS06940 PF01479 S4 domain YPZ3_RS06940 PF00849 RNA pseudouridylate synthase YPZ3_RS06945 PF07690 Major Facilitator Superfamily YPZ3_RS06950 PF13989 YejG-like protein YPZ3_RS06955 PF00005 ABC transporter YPZ3_RS06955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_RS06960 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS06960 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_RS06965 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS06970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_RS06975 PF00563 EAL domain YPZ3_RS06975 PF12792 CSS motif domain associated with EAL YPZ3_RS06980 PF00877 NlpC/P60 family YPZ3_RS06985 PF01569 PAP2 superfamily YPZ3_RS06990 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPZ3_RS06990 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPZ3_RS07000 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS07000 PF07729 FCD domain YPZ3_RS07005 PF08125 Mannitol dehydrogenase C-terminal domain YPZ3_RS07005 PF01232 Mannitol dehydrogenase Rossmann domain YPZ3_RS07010 PF03786 D-mannonate dehydratase (UxuA) YPZ3_RS07015 PF01132 Elongation factor P (EF-P) OB domain YPZ3_RS07015 PF09285 Elongation factor P, C-terminal YPZ3_RS07015 PF08207 Elongation factor P (EF-P) KOW-like domain YPZ3_RS07020 PF03222 Tryptophan/tyrosine permease family YPZ3_RS07025 PF03692 Putative zinc- or iron-chelating domain YPZ3_RS07035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_RS07035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_RS07035 PF01842 ACT domain YPZ3_RS07045 PF00171 Aldehyde dehydrogenase family YPZ3_RS07050 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_RS07050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_RS07055 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPZ3_RS07065 PF00005 ABC transporter YPZ3_RS07070 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS07075 PF00293 NUDIX domain YPZ3_RS07080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_RS07080 PF00381 PTS HPr component phosphorylation site YPZ3_RS07085 PF00294 pfkB family carbohydrate kinase YPZ3_RS07090 PF02378 Phosphotransferase system, EIIC YPZ3_RS07090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_RS07095 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS07100 PF17550 Family of unknown function YPZ3_RS07110 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_RS07110 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS07115 PF13953 PapC C-terminal domain YPZ3_RS07115 PF13954 PapC N-terminal domain YPZ3_RS07115 PF00577 Outer membrane usher protein YPZ3_RS07120 PF01261 Xylose isomerase-like TIM barrel YPZ3_RS07125 PF03601 Conserved hypothetical protein 698 YPZ3_RS07130 PF03466 LysR substrate binding domain YPZ3_RS07130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS07135 PF00324 Amino acid permease YPZ3_RS07145 PF01032 FecCD transport family YPZ3_RS07150 PF00005 ABC transporter YPZ3_RS07155 PF00593 TonB dependent receptor YPZ3_RS07155 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS07160 PF13417 Glutathione S-transferase, N-terminal domain YPZ3_RS07160 PF00043 Glutathione S-transferase, C-terminal domain YPZ3_RS07175 PF03180 NLPA lipoprotein YPZ3_RS07180 PF09383 NIL domain YPZ3_RS07180 PF00005 ABC transporter YPZ3_RS07185 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS07190 PF07943 Penicillin-binding protein 5, C-terminal domain YPZ3_RS07190 PF00768 D-alanyl-D-alanine carboxypeptidase YPZ3_RS07205 PF08220 DeoR-like helix-turn-helix domain YPZ3_RS07205 PF00455 DeoR C terminal sensor domain YPZ3_RS07210 PF01791 DeoC/LacD family aldolase YPZ3_RS07215 PF01569 PAP2 superfamily YPZ3_RS07225 PF06826 Predicted Permease Membrane Region YPZ3_RS07225 PF02080 TrkA-C domain YPZ3_RS07230 PF00462 Glutaredoxin YPZ3_RS07235 PF07214 Protein of unknown function (DUF1418) YPZ3_RS07245 PF10722 Putative bacterial sensory transduction regulator YPZ3_RS07250 PF13416 Bacterial extracellular solute-binding protein YPZ3_RS07255 PF00005 ABC transporter YPZ3_RS07255 PF08402 TOBE domain YPZ3_RS07260 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS07265 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS07270 PF10767 Protein of unknown function (DUF2593) YPZ3_RS07275 PF05958 tRNA (Uracil-5-)-methyltransferase YPZ3_RS07280 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS07310 PF00005 ABC transporter YPZ3_RS07315 PF03059 Nicotianamine synthase protein YPZ3_RS07320 PF10100 Staphylopine dehydrogenase YPZ3_RS07325 PF00892 EamA-like transporter family YPZ3_RS07335 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS07340 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS07345 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS07350 PF00005 ABC transporter YPZ3_RS07355 PF01817 Chorismate mutase type II YPZ3_RS07360 PF12883 Protein of unknown function (DUF3828) YPZ3_RS07365 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS07370 PF13460 NAD(P)H-binding YPZ3_RS07370 PF11066 Protein of unknown function (DUF2867) YPZ3_RS07375 PF01212 Beta-eliminating lyase YPZ3_RS07380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_RS07380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_RS07380 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_RS07385 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS07385 PF00175 Oxidoreductase NAD-binding domain YPZ3_RS07385 PF00970 Oxidoreductase FAD-binding domain YPZ3_RS07390 PF03063 Prismane/CO dehydrogenase family YPZ3_RS07395 PF03956 Lysine exporter LysO YPZ3_RS07400 PF11398 Protein of unknown function (DUF2813) YPZ3_RS07405 PF04393 Protein of unknown function (DUF535) YPZ3_RS07410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS07415 PF12704 MacB-like periplasmic core domain YPZ3_RS07415 PF02687 FtsX-like permease family YPZ3_RS07415 PF00005 ABC transporter YPZ3_RS07420 PF00313 'Cold-shock' DNA-binding domain YPZ3_RS07425 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPZ3_RS07430 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS07430 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS07430 PF17871 AAA lid domain YPZ3_RS07430 PF02861 Clp amino terminal domain, pathogenicity island component YPZ3_RS07430 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS07435 PF01797 Transposase IS200 like YPZ3_RS07440 PF01176 Translation initiation factor 1A / IF-1 YPZ3_RS07445 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPZ3_RS07450 PF00005 ABC transporter YPZ3_RS07450 PF00664 ABC transporter transmembrane region YPZ3_RS07455 PF00005 ABC transporter YPZ3_RS07455 PF00664 ABC transporter transmembrane region YPZ3_RS07465 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS07470 PF01037 Lrp/AsnC ligand binding domain YPZ3_RS07475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPZ3_RS07475 PF17854 FtsK alpha domain YPZ3_RS07475 PF09397 Ftsk gamma domain YPZ3_RS07475 PF01580 FtsK/SpoIIIE family YPZ3_RS07480 PF03548 Outer membrane lipoprotein carrier protein LolA YPZ3_RS07485 PF12002 MgsA AAA+ ATPase C terminal YPZ3_RS07485 PF16193 AAA C-terminal domain YPZ3_RS07485 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS07490 PF02403 Seryl-tRNA synthetase N-terminal domain YPZ3_RS07490 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPZ3_RS07495 PF07690 Major Facilitator Superfamily YPZ3_RS07500 PF04055 Radical SAM superfamily YPZ3_RS07510 PF02901 Pyruvate formate lyase-like YPZ3_RS07510 PF01228 Glycine radical YPZ3_RS07515 PF01226 Formate/nitrite transporter YPZ3_RS07520 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPZ3_RS07520 PF18381 YcaO cyclodehydratase C-terminal domain YPZ3_RS07525 PF00710 Asparaginase, N-terminal YPZ3_RS07525 PF17763 Glutaminase/Asparaginase C-terminal domain YPZ3_RS07530 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS07530 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_RS07530 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_RS07530 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_RS07530 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_RS07530 PF03895 YadA-like membrane anchor domain YPZ3_RS07530 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS07530 PF03895 YadA-like membrane anchor domain YPZ3_RS07540 PF00266 Aminotransferase class-V YPZ3_RS07545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPZ3_RS07550 PF02224 Cytidylate kinase YPZ3_RS07555 PF00575 S1 RNA binding domain YPZ3_RS07560 PF00216 Bacterial DNA-binding protein YPZ3_RS07570 PF03772 Competence protein YPZ3_RS07570 PF00753 Metallo-beta-lactamase superfamily YPZ3_RS07575 PF00664 ABC transporter transmembrane region YPZ3_RS07575 PF00005 ABC transporter YPZ3_RS07580 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPZ3_RS07585 PF07063 Domain of unknown function (DUF1338) YPZ3_RS07595 PF00313 'Cold-shock' DNA-binding domain YPZ3_RS07600 PF03966 Trm112p-like protein YPZ3_RS07605 PF02348 Cytidylyltransferase YPZ3_RS07610 PF01636 Phosphotransferase enzyme family YPZ3_RS07620 PF13847 Methyltransferase domain YPZ3_RS07625 PF03882 MukF winged-helix domain YPZ3_RS07625 PF17192 MukF middle domain YPZ3_RS07625 PF17193 MukF C-terminal domain YPZ3_RS07630 PF04288 MukE-like family YPZ3_RS07635 PF16330 MukB hinge domain YPZ3_RS07635 PF04310 MukB N-terminal YPZ3_RS07650 PF03734 L,D-transpeptidase catalytic domain YPZ3_RS07650 PF01471 Putative peptidoglycan binding domain YPZ3_RS07655 PF05951 Bacterial protein of unknown function (DUF882) YPZ3_RS07660 PF00753 Metallo-beta-lactamase superfamily YPZ3_RS07665 PF00155 Aminotransferase class I and II YPZ3_RS07670 PF00267 Gram-negative porin YPZ3_RS07675 PF00152 tRNA synthetases class II (D, K and N) YPZ3_RS07675 PF01336 OB-fold nucleic acid binding domain YPZ3_RS07680 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPZ3_RS07680 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPZ3_RS07685 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPZ3_RS07685 PF01433 Peptidase family M1 domain YPZ3_RS07685 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPZ3_RS07690 PF01180 Dihydroorotate dehydrogenase YPZ3_RS07695 PF07126 Cell-division protein ZapC YPZ3_RS07700 PF03473 MOSC domain YPZ3_RS07700 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS07700 PF03476 MOSC N-terminal beta barrel domain YPZ3_RS07705 PF02926 THUMP domain YPZ3_RS07705 PF01170 Putative RNA methylase family UPF0020 YPZ3_RS07705 PF10672 S-adenosylmethionine-dependent methyltransferase YPZ3_RS07710 PF00005 ABC transporter YPZ3_RS07710 PF16326 ABC transporter C-terminal domain YPZ3_RS07710 PF12848 ABC transporter YPZ3_RS07715 PF04403 Paraquat-inducible protein A YPZ3_RS07720 PF02470 MlaD protein YPZ3_RS07725 PF03886 ABC-type transport auxiliary lipoprotein component YPZ3_RS07735 PF04957 Ribosome modulation factor YPZ3_RS07745 PF01797 Transposase IS200 like YPZ3_RS07750 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_RS07750 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_RS07755 PF01695 IstB-like ATP binding protein YPZ3_RS07760 PF00665 Integrase core domain YPZ3_RS07760 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS07765 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_RS07765 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_RS07775 PF07977 FabA-like domain YPZ3_RS07780 PF05362 Lon protease (S16) C-terminal proteolytic domain YPZ3_RS07780 PF13654 AAA domain YPZ3_RS07785 PF06303 MatP N-terminal domain YPZ3_RS07785 PF17414 MatP C-terminal ribbon-helix-helix domain YPZ3_RS07790 PF01797 Transposase IS200 like YPZ3_RS07800 PF01389 OmpA-like transmembrane domain YPZ3_RS07800 PF00691 OmpA family YPZ3_RS07805 PF03846 Cell division inhibitor SulA YPZ3_RS07810 PF04993 TfoX N-terminal domain YPZ3_RS07810 PF04994 TfoX C-terminal domain YPZ3_RS07815 PF12805 FUSC-like inner membrane protein yccS YPZ3_RS07820 PF03733 Inner membrane component domain YPZ3_RS07825 PF00580 UvrD/REP helicase N-terminal domain YPZ3_RS07825 PF13361 UvrD-like helicase C-terminal domain YPZ3_RS07825 PF12462 DNA helicase IV / RNA helicase N terminal YPZ3_RS07830 PF02142 MGS-like domain YPZ3_RS07835 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPZ3_RS07840 PF13380 CoA binding domain YPZ3_RS07845 PF08755 Hemimethylated DNA-binding protein YccV like YPZ3_RS07850 PF17785 PUA-like domain YPZ3_RS07850 PF10672 S-adenosylmethionine-dependent methyltransferase YPZ3_RS07855 PF00708 Acylphosphatase YPZ3_RS07860 PF04358 DsrC like protein YPZ3_RS07870 PF13610 DDE domain YPZ3_RS07890 PF08031 Berberine and berberine like YPZ3_RS07890 PF01565 FAD binding domain YPZ3_RS07905 PF07977 FabA-like domain YPZ3_RS07910 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_RS07910 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_RS07920 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPZ3_RS07920 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPZ3_RS07930 PF00378 Enoyl-CoA hydratase/isomerase YPZ3_RS07945 PF00550 Phosphopantetheine attachment site YPZ3_RS07950 PF00698 Acyl transferase domain YPZ3_RS07965 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPZ3_RS07980 PF00691 OmpA family YPZ3_RS07980 PF05736 OprF membrane domain YPZ3_RS07990 PF17871 AAA lid domain YPZ3_RS07990 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS07990 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS07990 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS07995 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_RS07995 PF13296 Putative type VI secretion system Rhs element Vgr YPZ3_RS07995 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPZ3_RS08015 PF03811 InsA N-terminal domain YPZ3_RS08015 PF12759 InsA C-terminal domain YPZ3_RS08055 PF13592 Winged helix-turn helix YPZ3_RS08055 PF13358 DDE superfamily endonuclease YPZ3_RS08115 PF00005 ABC transporter YPZ3_RS08115 PF12848 ABC transporter YPZ3_RS08125 PF00872 Transposase, Mutator family YPZ3_RS08130 PF00899 ThiF family YPZ3_RS08135 PF03454 MoeA C-terminal region (domain IV) YPZ3_RS08135 PF00994 Probable molybdopterin binding domain YPZ3_RS08135 PF03453 MoeA N-terminal region (domain I and II) YPZ3_RS08145 PF00005 ABC transporter YPZ3_RS08150 PF13533 Biotin-lipoyl like YPZ3_RS08170 PF00756 Putative esterase YPZ3_RS08175 PF00107 Zinc-binding dehydrogenase YPZ3_RS08175 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_RS08180 PF03466 LysR substrate binding domain YPZ3_RS08180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS08185 PF06779 Uncharacterised MFS-type transporter YbfB YPZ3_RS08190 PF01227 GTP cyclohydrolase I YPZ3_RS08195 PF04235 Protein of unknown function (DUF418) YPZ3_RS08200 PF13407 Periplasmic binding protein domain YPZ3_RS08205 PF00005 ABC transporter YPZ3_RS08210 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS08215 PF02698 DUF218 domain YPZ3_RS08220 PF03949 Malic enzyme, NAD binding domain YPZ3_RS08220 PF00390 Malic enzyme, N-terminal domain YPZ3_RS08225 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPZ3_RS08225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPZ3_RS08230 PF04172 LrgB-like family YPZ3_RS08235 PF03788 LrgA family YPZ3_RS08240 PF07690 Major Facilitator Superfamily YPZ3_RS08265 PF01797 Transposase IS200 like YPZ3_RS08270 PF01588 Putative tRNA binding domain YPZ3_RS08270 PF09334 tRNA synthetases class I (M) YPZ3_RS08275 PF10609 NUBPL iron-transfer P-loop NTPase YPZ3_RS08280 PF00485 Phosphoribulokinase / Uridine kinase family YPZ3_RS08285 PF00692 dUTPase YPZ3_RS08290 PF05170 AsmA family YPZ3_RS08295 PF00571 CBS domain YPZ3_RS08295 PF03741 Integral membrane protein TerC family YPZ3_RS08295 PF03471 Transporter associated domain YPZ3_RS08300 PF11575 FhuF 2Fe-2S C-terminal domain YPZ3_RS08300 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_RS08305 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPZ3_RS08310 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPZ3_RS08320 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_RS08320 PF04183 IucA / IucC family YPZ3_RS08325 PF00005 ABC transporter YPZ3_RS08330 PF01032 FecCD transport family YPZ3_RS08335 PF01032 FecCD transport family YPZ3_RS08340 PF01497 Periplasmic binding protein YPZ3_RS08345 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS08345 PF00593 TonB dependent receptor YPZ3_RS08345 PF07660 Secretin and TonB N terminus short domain YPZ3_RS08350 PF06276 Ferric iron reductase FhuF-like transporter YPZ3_RS08350 PF04183 IucA / IucC family YPZ3_RS08355 PF00483 Nucleotidyl transferase YPZ3_RS08360 PF00483 Nucleotidyl transferase YPZ3_RS08365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPZ3_RS08365 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPZ3_RS08370 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPZ3_RS08370 PF01502 Phosphoribosyl-AMP cyclohydrolase YPZ3_RS08375 PF00977 Histidine biosynthesis protein YPZ3_RS08380 PF00977 Histidine biosynthesis protein YPZ3_RS08385 PF00117 Glutamine amidotransferase class-I YPZ3_RS08390 PF00475 Imidazoleglycerol-phosphate dehydratase YPZ3_RS08395 PF00155 Aminotransferase class I and II YPZ3_RS08400 PF00815 Histidinol dehydrogenase YPZ3_RS08405 PF08029 HisG, C-terminal domain YPZ3_RS08405 PF01634 ATP phosphoribosyltransferase YPZ3_RS08410 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS08420 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS08425 PF00005 ABC transporter YPZ3_RS08430 PF00005 ABC transporter YPZ3_RS08435 PF00465 Iron-containing alcohol dehydrogenase YPZ3_RS08445 PF13520 Amino acid permease YPZ3_RS08450 PF00929 Exonuclease YPZ3_RS08450 PF08411 Exonuclease C-terminal YPZ3_RS08460 PF04363 Protein of unknown function (DUF496) YPZ3_RS08465 PF00872 Transposase, Mutator family YPZ3_RS08470 PF02369 Bacterial Ig-like domain (group 1) YPZ3_RS08470 PF11924 Inverse autotransporter, beta-domain YPZ3_RS08470 PF09134 Invasin, domain 3 YPZ3_RS08475 PF07690 Major Facilitator Superfamily YPZ3_RS08480 PF04134 Protein of unknown function, DUF393 YPZ3_RS08490 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_RS08495 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPZ3_RS08495 PF13378 Enolase C-terminal domain-like YPZ3_RS08500 PF01070 FMN-dependent dehydrogenase YPZ3_RS08505 PF00764 Arginosuccinate synthase YPZ3_RS08510 PF01554 MatE YPZ3_RS08520 PF01522 Polysaccharide deacetylase YPZ3_RS08530 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPZ3_RS08540 PF00072 Response regulator receiver domain YPZ3_RS08540 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS08545 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPZ3_RS08555 PF03480 Bacterial extracellular solute-binding protein, family 7 YPZ3_RS08560 PF01648 4'-phosphopantetheinyl transferase superfamily YPZ3_RS08560 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPZ3_RS08570 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPZ3_RS08570 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPZ3_RS08575 PF01306 LacY proton/sugar symporter YPZ3_RS08580 PF00872 Transposase, Mutator family YPZ3_RS08585 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS08590 PF14002 YniB-like protein YPZ3_RS08595 PF03881 Fructosamine kinase YPZ3_RS08605 PF00950 ABC 3 transport family YPZ3_RS08610 PF00950 ABC 3 transport family YPZ3_RS08615 PF00005 ABC transporter YPZ3_RS08620 PF01297 Zinc-uptake complex component A periplasmic YPZ3_RS08625 PF01464 Transglycosylase SLT domain YPZ3_RS08630 PF01914 MarC family integral membrane protein YPZ3_RS08645 PF13619 KTSC domain YPZ3_RS08650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPZ3_RS08650 PF02824 TGS domain YPZ3_RS08650 PF03129 Anticodon binding domain YPZ3_RS08650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPZ3_RS08655 PF05198 Translation initiation factor IF-3, N-terminal domain YPZ3_RS08655 PF00707 Translation initiation factor IF-3, C-terminal domain YPZ3_RS08660 PF01632 Ribosomal protein L35 YPZ3_RS08665 PF00453 Ribosomal protein L20 YPZ3_RS08670 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPZ3_RS08670 PF01409 tRNA synthetases class II core domain (F) YPZ3_RS08675 PF03483 B3/4 domain YPZ3_RS08675 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPZ3_RS08675 PF03147 Ferredoxin-fold anticodon binding domain YPZ3_RS08675 PF03484 tRNA synthetase B5 domain YPZ3_RS08675 PF01588 Putative tRNA binding domain YPZ3_RS08680 PF00216 Bacterial DNA-binding protein YPZ3_RS08690 PF01032 FecCD transport family YPZ3_RS08695 PF00255 Glutathione peroxidase YPZ3_RS08700 PF00005 ABC transporter YPZ3_RS08705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPZ3_RS08710 PF00535 Glycosyl transferase family 2 YPZ3_RS08715 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS08715 PF02911 Formyl transferase, C-terminal domain YPZ3_RS08715 PF00551 Formyl transferase YPZ3_RS08720 PF01522 Polysaccharide deacetylase YPZ3_RS08725 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPZ3_RS08730 PF00892 EamA-like transporter family YPZ3_RS08740 PF00877 NlpC/P60 family YPZ3_RS08745 PF10437 Bacterial lipoate protein ligase C-terminus YPZ3_RS08745 PF03099 Biotin/lipoate A/B protein ligase family YPZ3_RS08755 PF00793 DAHP synthetase I family YPZ3_RS08760 PF03618 Kinase/pyrophosphorylase YPZ3_RS08765 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPZ3_RS08765 PF02896 PEP-utilising enzyme, TIM barrel domain YPZ3_RS08765 PF00391 PEP-utilising enzyme, mobile domain YPZ3_RS08770 PF01594 AI-2E family transporter YPZ3_RS08775 PF01565 FAD binding domain YPZ3_RS08775 PF02913 FAD linked oxidases, C-terminal domain YPZ3_RS08775 PF13183 4Fe-4S dicluster domain YPZ3_RS08780 PF03061 Thioesterase superfamily YPZ3_RS08790 PF01521 Iron-sulphur cluster biosynthesis YPZ3_RS08795 PF01458 Uncharacterized protein family (UPF0051) YPZ3_RS08800 PF00005 ABC transporter YPZ3_RS08805 PF01458 Uncharacterized protein family (UPF0051) YPZ3_RS08810 PF00266 Aminotransferase class-V YPZ3_RS08815 PF02657 Fe-S metabolism associated domain YPZ3_RS08820 PF03734 L,D-transpeptidase catalytic domain YPZ3_RS08820 PF01476 LysM domain YPZ3_RS08820 PF17969 L,D-transpeptidase C-terminal domain YPZ3_RS08825 PF01695 IstB-like ATP binding protein YPZ3_RS08830 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS08830 PF00665 Integrase core domain YPZ3_RS08845 PF04728 Lipoprotein leucine-zipper YPZ3_RS08850 PF00224 Pyruvate kinase, barrel domain YPZ3_RS08850 PF02887 Pyruvate kinase, alpha/beta domain YPZ3_RS08865 PF01554 MatE YPZ3_RS08870 PF00677 Lumazine binding domain YPZ3_RS08880 PF07690 Major Facilitator Superfamily YPZ3_RS08885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS08885 PF03466 LysR substrate binding domain YPZ3_RS08890 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS08895 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPZ3_RS08895 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPZ3_RS08900 PF00877 NlpC/P60 family YPZ3_RS08910 PF00462 Glutaredoxin YPZ3_RS08915 PF00929 Exonuclease YPZ3_RS08920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPZ3_RS08925 PF14431 YwqJ-like deaminase YPZ3_RS08925 PF18807 Tripartite Tc toxins repeat YPZ3_RS08930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPZ3_RS08935 PF16925 Tetracyclin repressor-like, C-terminal domain YPZ3_RS08935 PF00440 Bacterial regulatory proteins, tetR family YPZ3_RS08940 PF08019 Phosphoethanolamine transferase EptA/EptB YPZ3_RS08940 PF00884 Sulfatase YPZ3_RS08945 PF06945 Protein of unknown function (DUF1289) YPZ3_RS08950 PF00248 Aldo/keto reductase family YPZ3_RS08955 PF01047 MarR family YPZ3_RS08960 PF05433 Glycine zipper 2TM domain YPZ3_RS08965 PF03702 Anhydro-N-acetylmuramic acid kinase YPZ3_RS08970 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPZ3_RS08975 PF01243 Pyridoxamine 5'-phosphate oxidase YPZ3_RS08975 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPZ3_RS08980 PF00579 tRNA synthetases class I (W and Y) YPZ3_RS08980 PF01479 S4 domain YPZ3_RS08985 PF08543 Phosphomethylpyrimidine kinase YPZ3_RS08990 PF02798 Glutathione S-transferase, N-terminal domain YPZ3_RS08990 PF00043 Glutathione S-transferase, C-terminal domain YPZ3_RS08995 PF11656 YjbD family (DUF3811) YPZ3_RS09000 PF04893 Yip1 domain YPZ3_RS09005 PF00854 POT family YPZ3_RS09015 PF00005 ABC transporter YPZ3_RS09020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_RS09020 PF00005 ABC transporter YPZ3_RS09025 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_RS09025 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS09030 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS09035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_RS09055 PF00158 Sigma-54 interaction domain YPZ3_RS09055 PF02954 Bacterial regulatory protein, Fis family YPZ3_RS09060 PF04012 PspA/IM30 family YPZ3_RS09065 PF06667 Phage shock protein B YPZ3_RS09070 PF04024 PspC domain YPZ3_RS09080 PF04317 YcjX-like family, DUF463 YPZ3_RS09085 PF05128 Domain of unknown function (DUF697) YPZ3_RS09090 PF08808 RES domain YPZ3_RS09095 PF09722 Protein of unknown function (DUF2384) YPZ3_RS09100 PF00158 Sigma-54 interaction domain YPZ3_RS09100 PF18024 Helix-turn-helix domain YPZ3_RS09105 PF01797 Transposase IS200 like YPZ3_RS09110 PF08534 Redoxin YPZ3_RS09115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPZ3_RS09115 PF13378 Enolase C-terminal domain-like YPZ3_RS09120 PF00246 Zinc carboxypeptidase YPZ3_RS09125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_RS09130 PF01544 CorA-like Mg2+ transporter protein YPZ3_RS09140 PF07859 alpha/beta hydrolase fold YPZ3_RS09145 PF01171 PP-loop family YPZ3_RS09150 PF10371 Domain of unknown function YPZ3_RS09150 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPZ3_RS09150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_RS09150 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPZ3_RS09150 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPZ3_RS09155 PF00893 Small Multidrug Resistance protein YPZ3_RS09160 PF02308 MgtC family YPZ3_RS09165 PF03891 Domain of unknown function (DUF333) YPZ3_RS09170 PF03724 META domain YPZ3_RS09175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_RS09175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_RS09180 PF11739 Dicarboxylate transport YPZ3_RS09185 PF13617 YnbE-like lipoprotein YPZ3_RS09190 PF07027 Protein of unknown function (DUF1318) YPZ3_RS09195 PF08125 Mannitol dehydrogenase C-terminal domain YPZ3_RS09195 PF01232 Mannitol dehydrogenase Rossmann domain YPZ3_RS09200 PF04198 Putative sugar-binding domain YPZ3_RS09200 PF00325 Bacterial regulatory proteins, crp family YPZ3_RS09205 PF02525 Flavodoxin-like fold YPZ3_RS09210 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPZ3_RS09210 PF00271 Helicase conserved C-terminal domain YPZ3_RS09210 PF04408 Helicase associated domain (HA2) YPZ3_RS09210 PF11898 Domain of unknown function (DUF3418) YPZ3_RS09210 PF00270 DEAD/DEAH box helicase YPZ3_RS09225 PF00089 Trypsin YPZ3_RS09240 PF01292 Prokaryotic cytochrome b561 YPZ3_RS09245 PF04264 YceI-like domain YPZ3_RS09260 PF14431 YwqJ-like deaminase YPZ3_RS09260 PF18807 Tripartite Tc toxins repeat YPZ3_RS09275 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPZ3_RS09280 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS09280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS09280 PF00672 HAMP domain YPZ3_RS09285 PF00072 Response regulator receiver domain YPZ3_RS09285 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS09295 PF13520 Amino acid permease YPZ3_RS09300 PF07338 Protein of unknown function (DUF1471) YPZ3_RS09310 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPZ3_RS09310 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPZ3_RS09310 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPZ3_RS09315 PF02233 NAD(P) transhydrogenase beta subunit YPZ3_RS09320 PF00582 Universal stress protein family YPZ3_RS09325 PF00027 Cyclic nucleotide-binding domain YPZ3_RS09325 PF13545 Crp-like helix-turn-helix domain YPZ3_RS09330 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPZ3_RS09330 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPZ3_RS09335 PF00245 Alkaline phosphatase YPZ3_RS09350 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS09355 PF01842 ACT domain YPZ3_RS09360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_RS09360 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_RS09360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_RS09385 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPZ3_RS09385 PF01048 Phosphorylase superfamily YPZ3_RS09390 PF13407 Periplasmic binding protein domain YPZ3_RS09400 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS09410 PF00654 Voltage gated chloride channel YPZ3_RS09420 PF00480 ROK family YPZ3_RS09425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS09425 PF03466 LysR substrate binding domain YPZ3_RS09435 PF05472 DNA replication terminus site-binding protein (Ter protein) YPZ3_RS09440 PF10415 Fumarase C C-terminus YPZ3_RS09440 PF00206 Lyase YPZ3_RS09445 PF01238 Phosphomannose isomerase type I YPZ3_RS09450 PF06097 Bacterial protein of unknown function (DUF945) YPZ3_RS09460 PF13593 SBF-like CPA transporter family (DUF4137) YPZ3_RS09465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_RS09465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_RS09470 PF02311 AraC-like ligand binding domain YPZ3_RS09470 PF12833 Helix-turn-helix domain YPZ3_RS09475 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS09480 PF00005 ABC transporter YPZ3_RS09485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_RS09490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_RS09495 PF02610 L-arabinose isomerase YPZ3_RS09495 PF11762 L-arabinose isomerase C-terminal domain YPZ3_RS09500 PF03412 Peptidase C39 family YPZ3_RS09500 PF00005 ABC transporter YPZ3_RS09500 PF00664 ABC transporter transmembrane region YPZ3_RS09510 PF13533 Biotin-lipoyl like YPZ3_RS09515 PF00005 ABC transporter YPZ3_RS09515 PF00664 ABC transporter transmembrane region YPZ3_RS09520 PF00005 ABC transporter YPZ3_RS09520 PF03412 Peptidase C39 family YPZ3_RS09520 PF00664 ABC transporter transmembrane region YPZ3_RS09525 PF10754 Protein of unknown function (DUF2569) YPZ3_RS09530 PF02508 Rnf-Nqr subunit, membrane protein YPZ3_RS09535 PF04060 Putative Fe-S cluster YPZ3_RS09540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPZ3_RS09540 PF10531 SLBB domain YPZ3_RS09540 PF13375 RnfC Barrel sandwich hybrid domain YPZ3_RS09540 PF13237 4Fe-4S dicluster domain YPZ3_RS09545 PF12833 Helix-turn-helix domain YPZ3_RS09545 PF06445 GyrI-like small molecule binding domain YPZ3_RS09550 PF03116 NQR2, RnfD, RnfE family YPZ3_RS09555 PF04205 FMN-binding domain YPZ3_RS09560 PF02508 Rnf-Nqr subunit, membrane protein YPZ3_RS09565 PF10576 Iron-sulfur binding domain of endonuclease III YPZ3_RS09565 PF00633 Helix-hairpin-helix motif YPZ3_RS09565 PF00730 HhH-GPD superfamily base excision DNA repair protein YPZ3_RS09570 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS09575 PF07690 Major Facilitator Superfamily YPZ3_RS09580 PF00575 S1 RNA binding domain YPZ3_RS09580 PF08206 Ribonuclease B OB domain YPZ3_RS09580 PF17876 Cold shock domain YPZ3_RS09580 PF00773 RNB domain YPZ3_RS09585 PF13722 5TM C-terminal transporter carbon starvation CstA YPZ3_RS09585 PF02554 Carbon starvation protein CstA YPZ3_RS09590 PF04328 Selenoprotein, putative YPZ3_RS09595 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPZ3_RS09605 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_RS09610 PF05433 Glycine zipper 2TM domain YPZ3_RS09615 PF01253 Translation initiation factor SUI1 YPZ3_RS09620 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPZ3_RS09630 PF18073 Rubredoxin metal binding domain YPZ3_RS09635 PF06305 Lipopolysaccharide assembly protein A domain YPZ3_RS09640 PF01569 PAP2 superfamily YPZ3_RS09645 PF00925 GTP cyclohydrolase II YPZ3_RS09650 PF00694 Aconitase C-terminal domain YPZ3_RS09650 PF00330 Aconitase family (aconitate hydratase) YPZ3_RS09660 PF03466 LysR substrate binding domain YPZ3_RS09660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS09665 PF01396 Topoisomerase DNA binding C4 zinc finger YPZ3_RS09665 PF01751 Toprim domain YPZ3_RS09665 PF01131 DNA topoisomerase YPZ3_RS09665 PF08272 Topoisomerase I zinc-ribbon-like YPZ3_RS09675 PF10692 Protein of unknown function (DUF2498) YPZ3_RS09680 PF08496 Peptidase family S49 N-terminal YPZ3_RS09680 PF01343 Peptidase family S49 YPZ3_RS09685 PF00106 short chain dehydrogenase YPZ3_RS09690 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPZ3_RS09695 PF00849 RNA pseudouridylate synthase YPZ3_RS09695 PF01479 S4 domain YPZ3_RS09700 PF01300 Telomere recombination YPZ3_RS09705 PF02811 PHP domain YPZ3_RS09720 PF04715 Anthranilate synthase component I, N terminal region YPZ3_RS09720 PF00425 chorismate binding enzyme YPZ3_RS09725 PF00117 Glutamine amidotransferase class-I YPZ3_RS09730 PF02885 Glycosyl transferase family, helical bundle domain YPZ3_RS09730 PF00591 Glycosyl transferase family, a/b domain YPZ3_RS09735 PF00218 Indole-3-glycerol phosphate synthase YPZ3_RS09735 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPZ3_RS09740 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_RS09745 PF00290 Tryptophan synthase alpha chain YPZ3_RS09755 PF03922 OmpW family YPZ3_RS09780 PF04279 Intracellular septation protein A YPZ3_RS09785 PF03061 Thioesterase superfamily YPZ3_RS09790 PF00872 Transposase, Mutator family YPZ3_RS09795 PF03544 Gram-negative bacterial TonB protein C-terminal YPZ3_RS09800 PF03795 YCII-related domain YPZ3_RS09815 PF13505 Outer membrane protein beta-barrel domain YPZ3_RS09820 PF13396 Phospholipase_D-nuclease N-terminal YPZ3_RS09820 PF13091 PLD-like domain YPZ3_RS09825 PF04269 Protein of unknown function, DUF440 YPZ3_RS09840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_RS09840 PF00005 ABC transporter YPZ3_RS09845 PF00005 ABC transporter YPZ3_RS09845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_RS09850 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS09850 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_RS09855 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS09860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_RS09865 PF01914 MarC family integral membrane protein YPZ3_RS09870 PF00465 Iron-containing alcohol dehydrogenase YPZ3_RS09870 PF00171 Aldehyde dehydrogenase family YPZ3_RS09875 PF00665 Integrase core domain YPZ3_RS09875 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS09880 PF01695 IstB-like ATP binding protein YPZ3_RS09885 PF00265 Thymidine kinase YPZ3_RS09890 PF00816 H-NS histone family YPZ3_RS09895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPZ3_RS09895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPZ3_RS09895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPZ3_RS09900 PF00072 Response regulator receiver domain YPZ3_RS09905 PF02810 SEC-C motif YPZ3_RS09910 PF01842 ACT domain YPZ3_RS09910 PF00551 Formyl transferase YPZ3_RS09915 PF00872 Transposase, Mutator family YPZ3_RS09925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS09925 PF03466 LysR substrate binding domain YPZ3_RS09930 PF03372 Endonuclease/Exonuclease/phosphatase family YPZ3_RS09935 PF00293 NUDIX domain YPZ3_RS09940 PF07383 Protein of unknown function (DUF1496) YPZ3_RS09945 PF01751 Toprim domain YPZ3_RS09945 PF01131 DNA topoisomerase YPZ3_RS09950 PF02769 AIR synthase related protein, C-terminal domain YPZ3_RS09950 PF00586 AIR synthase related protein, N-terminal domain YPZ3_RS09955 PF00881 Nitroreductase family YPZ3_RS09960 PF01343 Peptidase family S49 YPZ3_RS09965 PF00710 Asparaginase, N-terminal YPZ3_RS09965 PF17763 Glutaminase/Asparaginase C-terminal domain YPZ3_RS09970 PF00857 Isochorismatase family YPZ3_RS09975 PF07023 Protein of unknown function (DUF1315) YPZ3_RS09980 PF01641 SelR domain YPZ3_RS09985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPZ3_RS09985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPZ3_RS09990 PF01263 Aldose 1-epimerase YPZ3_RS09995 PF06629 MltA-interacting protein MipA YPZ3_RS10000 PF08298 PrkA AAA domain YPZ3_RS10000 PF06798 PrkA serine protein kinase C-terminal domain YPZ3_RS10005 PF04285 Protein of unknown function (DUF444) YPZ3_RS10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS10015 PF03466 LysR substrate binding domain YPZ3_RS10020 PF02678 Pirin YPZ3_RS10020 PF05726 Pirin C-terminal cupin domain YPZ3_RS10025 PF07690 Major Facilitator Superfamily YPZ3_RS10030 PF01266 FAD dependent oxidoreductase YPZ3_RS10035 PF04293 SpoVR like protein YPZ3_RS10040 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS10040 PF07840 FadR C-terminal domain YPZ3_RS10045 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPZ3_RS10050 PF02600 Disulfide bond formation protein DsbB YPZ3_RS10065 PF00266 Aminotransferase class-V YPZ3_RS10075 PF00872 Transposase, Mutator family YPZ3_RS10085 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPZ3_RS10250 PF00872 Transposase, Mutator family YPZ3_RS10315 PF06530 Phage antitermination protein Q YPZ3_RS10325 PF05772 NinB protein YPZ3_RS10340 PF01695 IstB-like ATP binding protein YPZ3_RS10345 PF00665 Integrase core domain YPZ3_RS10345 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS10350 PF12167 Arm DNA-binding domain YPZ3_RS10350 PF00589 Phage integrase family YPZ3_RS10355 PF03692 Putative zinc- or iron-chelating domain YPZ3_RS10360 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_RS10365 PF13406 Transglycosylase SLT domain YPZ3_RS10370 PF05166 YcgL domain YPZ3_RS10375 PF03775 Septum formation inhibitor MinC, C-terminal domain YPZ3_RS10375 PF05209 Septum formation inhibitor MinC, N-terminal domain YPZ3_RS10380 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPZ3_RS10385 PF03776 Septum formation topological specificity factor MinE YPZ3_RS10390 PF01612 3'-5' exonuclease YPZ3_RS10390 PF00570 HRDC domain YPZ3_RS10395 PF00501 AMP-binding enzyme YPZ3_RS10395 PF13193 AMP-binding enzyme C-terminal domain YPZ3_RS10400 PF03843 Outer membrane lipoprotein Slp family YPZ3_RS10405 PF00814 Glycoprotease family YPZ3_RS10410 PF13307 Helicase C-terminal domain YPZ3_RS10410 PF04851 Type III restriction enzyme, res subunit YPZ3_RS10415 PF01042 Endoribonuclease L-PSP YPZ3_RS10420 PF00893 Small Multidrug Resistance protein YPZ3_RS10425 PF00893 Small Multidrug Resistance protein YPZ3_RS10430 PF01081 KDPG and KHG aldolase YPZ3_RS10435 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPZ3_RS10435 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPZ3_RS10440 PF01380 SIS domain YPZ3_RS10440 PF01418 Helix-turn-helix domain, rpiR family YPZ3_RS10445 PF02887 Pyruvate kinase, alpha/beta domain YPZ3_RS10445 PF00224 Pyruvate kinase, barrel domain YPZ3_RS10450 PF03279 Bacterial lipid A biosynthesis acyltransferase YPZ3_RS10455 PF01551 Peptidase family M23 YPZ3_RS10455 PF01476 LysM domain YPZ3_RS10455 PF08525 Opacity-associated protein A N-terminal motif YPZ3_RS10460 PF01297 Zinc-uptake complex component A periplasmic YPZ3_RS10465 PF00005 ABC transporter YPZ3_RS10470 PF00950 ABC 3 transport family YPZ3_RS10475 PF17864 RuvB AAA lid domain YPZ3_RS10475 PF05491 RuvB C-terminal winged helix domain YPZ3_RS10475 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPZ3_RS10480 PF07499 RuvA, C-terminal domain YPZ3_RS10480 PF01330 RuvA N terminal domain YPZ3_RS10485 PF02075 Crossover junction endodeoxyribonuclease RuvC YPZ3_RS10490 PF01709 Transcriptional regulator YPZ3_RS10495 PF00293 NUDIX domain YPZ3_RS10500 PF01336 OB-fold nucleic acid binding domain YPZ3_RS10500 PF00152 tRNA synthetases class II (D, K and N) YPZ3_RS10500 PF02938 GAD domain YPZ3_RS10505 PF01904 Protein of unknown function DUF72 YPZ3_RS10510 PF01124 MAPEG family YPZ3_RS10515 PF13649 Methyltransferase domain YPZ3_RS10520 PF08003 Protein of unknown function (DUF1698) YPZ3_RS10525 PF03932 CutC family YPZ3_RS10530 PF06185 YecM protein YPZ3_RS10535 PF05746 DALR anticodon binding domain YPZ3_RS10535 PF03485 Arginyl tRNA synthetase N terminal domain YPZ3_RS10535 PF00750 tRNA synthetases class I (R) YPZ3_RS10540 PF05860 haemagglutination activity domain YPZ3_RS10540 PF13332 Hemagglutinin repeat YPZ3_RS10545 PF08479 POTRA domain, ShlB-type YPZ3_RS10545 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_RS10545 PF17287 POTRA domain YPZ3_RS10550 PF03023 Lipid II flippase MurJ YPZ3_RS10555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_RS10560 PF13302 Acetyltransferase (GNAT) domain YPZ3_RS10565 PF07690 Major Facilitator Superfamily YPZ3_RS10570 PF07273 Protein of unknown function (DUF1439) YPZ3_RS10575 PF02613 Nitrate reductase delta subunit YPZ3_RS10580 PF02811 PHP domain YPZ3_RS10590 PF00480 ROK family YPZ3_RS10590 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPZ3_RS10595 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_RS10600 PF08402 TOBE domain YPZ3_RS10600 PF00005 ABC transporter YPZ3_RS10610 PF00005 ABC transporter YPZ3_RS10610 PF08402 TOBE domain YPZ3_RS10615 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS10620 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS10630 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_RS10645 PF01740 STAS domain YPZ3_RS10645 PF00916 Sulfate permease family YPZ3_RS10650 PF00793 DAHP synthetase I family YPZ3_RS10655 PF13369 Transglutaminase-like superfamily YPZ3_RS10660 PF04247 Invasion gene expression up-regulator, SirB YPZ3_RS10665 PF13847 Methyltransferase domain YPZ3_RS10665 PF17827 PrmC N-terminal domain YPZ3_RS10670 PF03462 PCRF domain YPZ3_RS10670 PF00472 RF-1 domain YPZ3_RS10675 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPZ3_RS10675 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPZ3_RS10675 PF01488 Shikimate / quinate 5-dehydrogenase YPZ3_RS10680 PF03550 Outer membrane lipoprotein LolB YPZ3_RS10685 PF00288 GHMP kinases N terminal domain YPZ3_RS10685 PF08544 GHMP kinases C terminal YPZ3_RS10695 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPZ3_RS10695 PF14572 Phosphoribosyl synthetase-associated domain YPZ3_RS10705 PF10762 Protein of unknown function (DUF2583) YPZ3_RS10710 PF01195 Peptidyl-tRNA hydrolase YPZ3_RS10715 PF01926 50S ribosome-binding GTPase YPZ3_RS10715 PF06071 Protein of unknown function (DUF933) YPZ3_RS10760 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPZ3_RS10765 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS10765 PF00072 Response regulator receiver domain YPZ3_RS10770 PF00672 HAMP domain YPZ3_RS10770 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS10770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS10810 PF08242 Methyltransferase domain YPZ3_RS10835 PF00872 Transposase, Mutator family YPZ3_RS10880 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS10885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_RS10885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPZ3_RS10890 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPZ3_RS10890 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_RS10900 PF05962 HutD YPZ3_RS10905 PF01979 Amidohydrolase family YPZ3_RS10910 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS10910 PF07702 UTRA domain YPZ3_RS10915 PF01979 Amidohydrolase family YPZ3_RS10925 PF01695 IstB-like ATP binding protein YPZ3_RS10930 PF00665 Integrase core domain YPZ3_RS10930 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS10960 PF08402 TOBE domain YPZ3_RS10960 PF00005 ABC transporter YPZ3_RS10965 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS10970 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS10980 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_RS10980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_RS10985 PF00480 ROK family YPZ3_RS10990 PF07702 UTRA domain YPZ3_RS10990 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS11075 PF05638 Type VI secretion system effector, Hcp YPZ3_RS11120 PF01066 CDP-alcohol phosphatidyltransferase YPZ3_RS11125 PF01541 GIY-YIG catalytic domain YPZ3_RS11125 PF08459 UvrC Helix-hairpin-helix N-terminal YPZ3_RS11125 PF02151 UvrB/uvrC motif YPZ3_RS11130 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS11130 PF00072 Response regulator receiver domain YPZ3_RS11135 PF10769 Protein of unknown function (DUF2594) YPZ3_RS11140 PF06942 GlpM protein YPZ3_RS11150 PF13505 Outer membrane protein beta-barrel domain YPZ3_RS11160 PF00324 Amino acid permease YPZ3_RS11165 PF01344 Kelch motif YPZ3_RS11170 PF03358 NADPH-dependent FMN reductase YPZ3_RS11175 PF04261 Dyp-type peroxidase family YPZ3_RS11180 PF09375 Imelysin YPZ3_RS11180 PF13473 Cupredoxin-like domain YPZ3_RS11185 PF03239 Iron permease FTR1 family YPZ3_RS11190 PF00474 Sodium:solute symporter family YPZ3_RS11200 PF14850 DNA-binding domain of Proline dehydrogenase YPZ3_RS11200 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPZ3_RS11200 PF01619 Proline dehydrogenase YPZ3_RS11200 PF00171 Aldehyde dehydrogenase family YPZ3_RS11215 PF00005 ABC transporter YPZ3_RS11220 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS11225 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS11230 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_RS11235 PF02899 Phage integrase, N-terminal SAM-like domain YPZ3_RS11240 PF04542 Sigma-70 region 2 YPZ3_RS11240 PF04545 Sigma-70, region 4 YPZ3_RS11240 PF04539 Sigma-70 region 3 YPZ3_RS11245 PF00700 Bacterial flagellin C-terminal helical region YPZ3_RS11245 PF00669 Bacterial flagellin N-terminal helical region YPZ3_RS11245 PF08884 Flagellin D3 domain YPZ3_RS11250 PF07195 Flagellar hook-associated protein 2 C-terminus YPZ3_RS11250 PF02465 Flagellar hook-associated protein 2 N-terminus YPZ3_RS11250 PF07196 Flagellin hook IN motif YPZ3_RS11255 PF02561 Flagellar protein FliS YPZ3_RS11260 PF05400 Flagellar protein FliT YPZ3_RS11270 PF12833 Helix-turn-helix domain YPZ3_RS11275 PF02743 Cache domain YPZ3_RS11275 PF00211 Adenylate and Guanylate cyclase catalytic domain YPZ3_RS11275 PF00672 HAMP domain YPZ3_RS11280 PF01966 HD domain YPZ3_RS11285 PF00730 HhH-GPD superfamily base excision DNA repair protein YPZ3_RS11300 PF02049 Flagellar hook-basal body complex protein FliE YPZ3_RS11305 PF08345 Flagellar M-ring protein C-terminal YPZ3_RS11305 PF01514 Secretory protein of YscJ/FliF family YPZ3_RS11310 PF14842 FliG N-terminal domain YPZ3_RS11310 PF01706 FliG C-terminal domain YPZ3_RS11310 PF14841 FliG middle domain YPZ3_RS11315 PF02108 Flagellar assembly protein FliH YPZ3_RS11320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_RS11320 PF18269 T3SS EscN ATPase C-terminal domain YPZ3_RS11325 PF02050 Flagellar FliJ protein YPZ3_RS11330 PF02120 Flagellar hook-length control protein FliK YPZ3_RS11335 PF03748 Flagellar basal body-associated protein FliL YPZ3_RS11340 PF02154 Flagellar motor switch protein FliM YPZ3_RS11340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_RS11345 PF16973 Flagellar motor switch protein FliN N-terminal YPZ3_RS11345 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPZ3_RS11350 PF04347 Flagellar biosynthesis protein, FliO YPZ3_RS11355 PF00813 FliP family YPZ3_RS11365 PF01311 Bacterial export proteins, family 1 YPZ3_RS11380 PF00294 pfkB family carbohydrate kinase YPZ3_RS11385 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS11390 PF00005 ABC transporter YPZ3_RS11395 PF13407 Periplasmic binding protein domain YPZ3_RS11400 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS11405 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_RS11410 PF04198 Putative sugar-binding domain YPZ3_RS11415 PF00669 Bacterial flagellin N-terminal helical region YPZ3_RS11420 PF00460 Flagella basal body rod protein YPZ3_RS11420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS11425 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPZ3_RS11425 PF10135 Rod binding protein YPZ3_RS11430 PF02119 Flagellar P-ring protein YPZ3_RS11435 PF02107 Flagellar L-ring protein YPZ3_RS11445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS11445 PF00460 Flagella basal body rod protein YPZ3_RS11450 PF07559 Flagellar basal body protein FlaE YPZ3_RS11450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS11450 PF00460 Flagella basal body rod protein YPZ3_RS11455 PF13860 FlgD Ig-like domain YPZ3_RS11455 PF03963 Flagellar hook capping protein - N-terminal region YPZ3_RS11455 PF13861 FlgD Tudor-like domain YPZ3_RS11460 PF00460 Flagella basal body rod protein YPZ3_RS11460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPZ3_RS11465 PF00460 Flagella basal body rod protein YPZ3_RS11470 PF13144 Chaperone for flagella basal body P-ring formation YPZ3_RS11470 PF17656 FlgA N-terminal domain YPZ3_RS11475 PF04316 Anti-sigma-28 factor, FlgM YPZ3_RS11480 PF05130 FlgN protein YPZ3_RS11485 PF11924 Inverse autotransporter, beta-domain YPZ3_RS11485 PF02369 Bacterial Ig-like domain (group 1) YPZ3_RS11485 PF07979 Intimin C-type lectin domain YPZ3_RS11485 PF09134 Invasin, domain 3 YPZ3_RS11495 PF02369 Bacterial Ig-like domain (group 1) YPZ3_RS11495 PF07979 Intimin C-type lectin domain YPZ3_RS11495 PF11924 Inverse autotransporter, beta-domain YPZ3_RS11495 PF09134 Invasin, domain 3 YPZ3_RS11500 PF06366 Flagellar protein FlhE YPZ3_RS11505 PF00771 FHIPEP family YPZ3_RS11510 PF01312 FlhB HrpN YscU SpaS Family YPZ3_RS11530 PF10709 Protein of unknown function (DUF2511) YPZ3_RS11540 PF04234 CopC domain YPZ3_RS11545 PF00210 Ferritin-like domain YPZ3_RS11550 PF06440 DNA polymerase III, theta subunit YPZ3_RS11555 PF00561 alpha/beta hydrolase fold YPZ3_RS11560 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPZ3_RS11560 PF00326 Prolyl oligopeptidase family YPZ3_RS11565 PF13995 YebF-like protein YPZ3_RS11570 PF04266 ASCH domain YPZ3_RS11575 PF07130 YebG protein YPZ3_RS11580 PF00270 DEAD/DEAH box helicase YPZ3_RS11580 PF00271 Helicase conserved C-terminal domain YPZ3_RS11580 PF03880 DbpA RNA binding domain YPZ3_RS11585 PF02222 ATP-grasp domain YPZ3_RS11590 PF03701 Uncharacterised protein family (UPF0181) YPZ3_RS11595 PF04715 Anthranilate synthase component I, N terminal region YPZ3_RS11595 PF00425 chorismate binding enzyme YPZ3_RS11600 PF00293 NUDIX domain YPZ3_RS11605 PF03315 Serine dehydratase beta chain YPZ3_RS11605 PF03313 Serine dehydratase alpha chain YPZ3_RS11610 PF01613 Flavin reductase like domain YPZ3_RS11615 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPZ3_RS11615 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPZ3_RS11620 PF07690 Major Facilitator Superfamily YPZ3_RS11625 PF03328 HpcH/HpaI aldolase/citrate lyase family YPZ3_RS11630 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_RS11635 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPZ3_RS11640 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPZ3_RS11645 PF00171 Aldehyde dehydrogenase family YPZ3_RS11650 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_RS11655 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPZ3_RS11660 PF01047 MarR family YPZ3_RS11665 PF03471 Transporter associated domain YPZ3_RS11665 PF03741 Integral membrane protein TerC family YPZ3_RS11670 PF03830 PTS system sorbose subfamily IIB component YPZ3_RS11670 PF03610 PTS system fructose IIA component YPZ3_RS11675 PF03609 PTS system sorbose-specific iic component YPZ3_RS11680 PF03613 PTS system mannose/fructose/sorbose family IID component YPZ3_RS11685 PF06173 Protein of unknown function (DUF986) YPZ3_RS11690 PF02659 Putative manganese efflux pump YPZ3_RS11695 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS11695 PF00593 TonB dependent receptor YPZ3_RS11700 PF05231 MASE1 YPZ3_RS11700 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_RS11700 PF00563 EAL domain YPZ3_RS11700 PF08448 PAS fold YPZ3_RS11700 PF08447 PAS fold YPZ3_RS11700 PF13426 PAS domain YPZ3_RS11710 PF13847 Methyltransferase domain YPZ3_RS11715 PF02578 Multi-copper polyphenol oxidoreductase laccase YPZ3_RS11720 PF00313 'Cold-shock' DNA-binding domain YPZ3_RS11725 PF10736 Protein of unknown function (DUF2627) YPZ3_RS11735 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPZ3_RS11740 PF00324 Amino acid permease YPZ3_RS11755 PF13974 YebO-like protein YPZ3_RS11760 PF13996 YobH-like protein YPZ3_RS11765 PF10964 Protein of unknown function (DUF2766) YPZ3_RS11775 PF12833 Helix-turn-helix domain YPZ3_RS11785 PF00005 ABC transporter YPZ3_RS11785 PF00664 ABC transporter transmembrane region YPZ3_RS11800 PF06167 Glucose-regulated metallo-peptidase M90 YPZ3_RS11810 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_RS11810 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS11815 PF01695 IstB-like ATP binding protein YPZ3_RS11820 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS11820 PF00665 Integrase core domain YPZ3_RS11825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_RS11825 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS11830 PF00872 Transposase, Mutator family YPZ3_RS11835 PF07883 Cupin domain YPZ3_RS11840 PF04962 KduI/IolB family YPZ3_RS11850 PF06917 Periplasmic pectate lyase YPZ3_RS11855 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS11860 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS11865 PF17912 MalK OB fold domain YPZ3_RS11865 PF03459 TOBE domain YPZ3_RS11865 PF00005 ABC transporter YPZ3_RS11870 PF01547 Bacterial extracellular solute-binding protein YPZ3_RS11875 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPZ3_RS11880 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPZ3_RS11885 PF00375 Sodium:dicarboxylate symporter family YPZ3_RS11890 PF01510 N-acetylmuramoyl-L-alanine amidase YPZ3_RS11895 PF09339 IclR helix-turn-helix domain YPZ3_RS11895 PF01614 Bacterial transcriptional regulator YPZ3_RS11900 PF14583 Oligogalacturonate lyase YPZ3_RS11905 PF07690 Major Facilitator Superfamily YPZ3_RS11910 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS11910 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_RS11920 PF00577 Outer membrane usher protein YPZ3_RS11920 PF13954 PapC N-terminal domain YPZ3_RS11920 PF13953 PapC C-terminal domain YPZ3_RS11925 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS11925 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_RS11930 PF00419 Fimbrial protein YPZ3_RS11935 PF01435 Peptidase family M48 YPZ3_RS11940 PF00595 PDZ domain YPZ3_RS11940 PF17804 Tail specific protease N-terminal domain YPZ3_RS11940 PF03572 Peptidase family S41 YPZ3_RS11940 PF11818 C-terminal domain of tail specific protease (DUF3340) YPZ3_RS11945 PF04352 ProQ/FINO family YPZ3_RS11945 PF17516 ProQ C-terminal domain YPZ3_RS11950 PF13185 GAF domain YPZ3_RS11955 PF04403 Paraquat-inducible protein A YPZ3_RS11960 PF02470 MlaD protein YPZ3_RS11980 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_RS11980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS11995 PF07351 Protein of unknown function (DUF1480) YPZ3_RS12005 PF00665 Integrase core domain YPZ3_RS12005 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS12010 PF01695 IstB-like ATP binding protein YPZ3_RS12035 PF00842 Alanine racemase, C-terminal domain YPZ3_RS12035 PF01168 Alanine racemase, N-terminal domain YPZ3_RS12045 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_RS12045 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS12045 PF03895 YadA-like membrane anchor domain YPZ3_RS12045 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_RS12050 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS12050 PF05662 Coiled stalk of trimeric autotransporter adhesin YPZ3_RS12050 PF05658 Head domain of trimeric autotransporter adhesin YPZ3_RS12050 PF03895 YadA-like membrane anchor domain YPZ3_RS12055 PF01510 N-acetylmuramoyl-L-alanine amidase YPZ3_RS12065 PF04344 Chemotaxis phosphatase, CheZ YPZ3_RS12070 PF00072 Response regulator receiver domain YPZ3_RS12075 PF01339 CheB methylesterase YPZ3_RS12075 PF00072 Response regulator receiver domain YPZ3_RS12080 PF03705 CheR methyltransferase, all-alpha domain YPZ3_RS12080 PF01739 CheR methyltransferase, SAM binding domain YPZ3_RS12085 PF02203 Tar ligand binding domain homologue YPZ3_RS12085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_RS12085 PF00672 HAMP domain YPZ3_RS12090 PF02203 Tar ligand binding domain homologue YPZ3_RS12090 PF00672 HAMP domain YPZ3_RS12090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_RS12105 PF12951 Passenger-associated-transport-repeat YPZ3_RS12110 PF13309 HTH domain YPZ3_RS12110 PF08348 YheO-like PAS domain YPZ3_RS12120 PF01042 Endoribonuclease L-PSP YPZ3_RS12125 PF07690 Major Facilitator Superfamily YPZ3_RS12130 PF01584 CheW-like domain YPZ3_RS12135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS12135 PF02895 Signal transducing histidine kinase, homodimeric domain YPZ3_RS12135 PF09078 CheY binding YPZ3_RS12135 PF01584 CheW-like domain YPZ3_RS12135 PF01627 Hpt domain YPZ3_RS12140 PF00691 OmpA family YPZ3_RS12140 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPZ3_RS12145 PF01618 MotA/TolQ/ExbB proton channel family YPZ3_RS12150 PF05280 Flagellar transcriptional activator (FlhC) YPZ3_RS12160 PF00690 Cation transporter/ATPase, N-terminus YPZ3_RS12160 PF00689 Cation transporting ATPase, C-terminus YPZ3_RS12165 PF02308 MgtC family YPZ3_RS12180 PF10781 Dextransucrase DSRB YPZ3_RS12185 PF00313 'Cold-shock' DNA-binding domain YPZ3_RS12190 PF16353 Domain of unknown function(DUF4981) YPZ3_RS12190 PF02929 Beta galactosidase small chain YPZ3_RS12190 PF00703 Glycosyl hydrolases family 2 YPZ3_RS12190 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPZ3_RS12190 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPZ3_RS12195 PF08659 KR domain YPZ3_RS12195 PF00550 Phosphopantetheine attachment site YPZ3_RS12195 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_RS12195 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_RS12195 PF16197 Ketoacyl-synthetase C-terminal extension YPZ3_RS12195 PF00107 Zinc-binding dehydrogenase YPZ3_RS12195 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_RS12195 PF00698 Acyl transferase domain YPZ3_RS12195 PF14765 Polyketide synthase dehydratase YPZ3_RS12200 PF10777 Inner membrane protein YlaC YPZ3_RS12205 PF01037 Lrp/AsnC ligand binding domain YPZ3_RS12205 PF13404 AsnC-type helix-turn-helix domain YPZ3_RS12215 PF14001 YdfZ protein YPZ3_RS12220 PF00328 Histidine phosphatase superfamily (branch 2) YPZ3_RS12230 PF01638 HxlR-like helix-turn-helix YPZ3_RS12235 PF05368 NmrA-like family YPZ3_RS12240 PF08447 PAS fold YPZ3_RS12240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_RS12250 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS12250 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_RS12255 PF00180 Isocitrate/isopropylmalate dehydrogenase YPZ3_RS12260 PF00849 RNA pseudouridylate synthase YPZ3_RS12265 PF00293 NUDIX domain YPZ3_RS12275 PF04356 Protein of unknown function (DUF489) YPZ3_RS12280 PF00206 Lyase YPZ3_RS12280 PF08328 Adenylosuccinate lyase C-terminal YPZ3_RS12290 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS12290 PF00072 Response regulator receiver domain YPZ3_RS12295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS12295 PF08918 PhoQ Sensor YPZ3_RS12300 PF08007 Cupin superfamily protein YPZ3_RS12305 PF07687 Peptidase dimerisation domain YPZ3_RS12305 PF01546 Peptidase family M20/M25/M40 YPZ3_RS12310 PF02146 Sir2 family YPZ3_RS12315 PF00480 ROK family YPZ3_RS12320 PF02687 FtsX-like permease family YPZ3_RS12320 PF12704 MacB-like periplasmic core domain YPZ3_RS12325 PF00005 ABC transporter YPZ3_RS12330 PF02687 FtsX-like permease family YPZ3_RS12330 PF12704 MacB-like periplasmic core domain YPZ3_RS12335 PF02559 CarD-like/TRCF domain YPZ3_RS12335 PF17757 UvrB interaction domain YPZ3_RS12335 PF03461 TRCF domain YPZ3_RS12335 PF00271 Helicase conserved C-terminal domain YPZ3_RS12335 PF00270 DEAD/DEAH box helicase YPZ3_RS12340 PF05433 Glycine zipper 2TM domain YPZ3_RS12345 PF00872 Transposase, Mutator family YPZ3_RS12360 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS12365 PF05728 Uncharacterised protein family (UPF0227) YPZ3_RS12370 PF00933 Glycosyl hydrolase family 3 N terminal domain YPZ3_RS12375 PF01636 Phosphotransferase enzyme family YPZ3_RS12380 PF13036 Peptidoglycan-synthase activator LpoB YPZ3_RS12380 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPZ3_RS12385 PF07233 Protein of unknown function (DUF1425) YPZ3_RS12390 PF01230 HIT domain YPZ3_RS12395 PF08501 Shikimate dehydrogenase substrate binding domain YPZ3_RS12405 PF00367 phosphotransferase system, EIIB YPZ3_RS12405 PF02378 Phosphotransferase system, EIIC YPZ3_RS12410 PF01026 TatD related DNase YPZ3_RS12415 PF09115 DNA polymerase III, delta subunit, C terminal YPZ3_RS12420 PF02223 Thymidylate kinase YPZ3_RS12425 PF02618 YceG-like family YPZ3_RS12430 PF01063 Amino-transferase class IV YPZ3_RS12435 PF01797 Transposase IS200 like YPZ3_RS12440 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_RS12440 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_RS12445 PF00550 Phosphopantetheine attachment site YPZ3_RS12455 PF00698 Acyl transferase domain YPZ3_RS12460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPZ3_RS12460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPZ3_RS12465 PF02504 Fatty acid synthesis protein YPZ3_RS12470 PF01783 Ribosomal L32p protein family YPZ3_RS12475 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPZ3_RS12480 PF02545 Maf-like protein YPZ3_RS12495 PF01479 S4 domain YPZ3_RS12495 PF00849 RNA pseudouridylate synthase YPZ3_RS12500 PF12111 Polyribonucleotide phosphorylase C terminal YPZ3_RS12500 PF00575 S1 RNA binding domain YPZ3_RS12500 PF10150 Ribonuclease E/G family YPZ3_RS12505 PF00872 Transposase, Mutator family YPZ3_RS12510 PF03992 Antibiotic biosynthesis monooxygenase YPZ3_RS12515 PF01979 Amidohydrolase family YPZ3_RS12520 PF06183 DinI-like family YPZ3_RS12530 PF13991 BssS protein family YPZ3_RS12535 PF00872 Transposase, Mutator family YPZ3_RS12540 PF01266 FAD dependent oxidoreductase YPZ3_RS12545 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS12550 PF01594 AI-2E family transporter YPZ3_RS12555 PF00581 Rhodanese-like domain YPZ3_RS12555 PF12368 Rhodanase C-terminal YPZ3_RS12555 PF17773 UPF0176 acylphosphatase like domain YPZ3_RS12580 PF00765 Autoinducer synthase YPZ3_RS12585 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS12585 PF03472 Autoinducer binding domain YPZ3_RS12590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS12590 PF03466 LysR substrate binding domain YPZ3_RS12600 PF00083 Sugar (and other) transporter YPZ3_RS12610 PF00248 Aldo/keto reductase family YPZ3_RS12615 PF09618 CRISPR-associated protein (Cas_Csy4) YPZ3_RS12620 PF09615 CRISPR-associated protein (Cas_Csy3) YPZ3_RS12625 PF09614 CRISPR-associated protein (Cas_Csy2) YPZ3_RS12630 PF09611 CRISPR-associated protein (Cas_Csy1) YPZ3_RS12640 PF01867 CRISPR associated protein Cas1 YPZ3_RS12645 PF00924 Mechanosensitive ion channel YPZ3_RS12665 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPZ3_RS12670 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS12675 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS12685 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS12690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPZ3_RS12690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPZ3_RS12690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPZ3_RS12690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPZ3_RS12695 PF00005 ABC transporter YPZ3_RS12695 PF17912 MalK OB fold domain YPZ3_RS12705 PF05594 Haemagluttinin repeat YPZ3_RS12705 PF05860 haemagglutination activity domain YPZ3_RS12705 PF04829 Pre-toxin domain with VENN motif YPZ3_RS12705 PF13332 Hemagglutinin repeat YPZ3_RS12705 PF15526 Novel toxin 21 YPZ3_RS12725 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS12725 PF13332 Hemagglutinin repeat YPZ3_RS12725 PF05860 haemagglutination activity domain YPZ3_RS12725 PF04829 Pre-toxin domain with VENN motif YPZ3_RS12745 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS12745 PF05860 haemagglutination activity domain YPZ3_RS12745 PF04829 Pre-toxin domain with VENN motif YPZ3_RS12745 PF13332 Hemagglutinin repeat YPZ3_RS12750 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_RS12750 PF17287 POTRA domain YPZ3_RS12750 PF08479 POTRA domain, ShlB-type YPZ3_RS12755 PF00970 Oxidoreductase FAD-binding domain YPZ3_RS12755 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS12755 PF00175 Oxidoreductase NAD-binding domain YPZ3_RS12760 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPZ3_RS12760 PF00355 Rieske [2Fe-2S] domain YPZ3_RS12765 PF02028 BCCT, betaine/carnitine/choline family transporter YPZ3_RS12775 PF00180 Isocitrate/isopropylmalate dehydrogenase YPZ3_RS12780 PF03466 LysR substrate binding domain YPZ3_RS12780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS12785 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS12790 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS12795 PF00005 ABC transporter YPZ3_RS12800 PF13407 Periplasmic binding protein domain YPZ3_RS12805 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_RS12805 PF00107 Zinc-binding dehydrogenase YPZ3_RS12825 PF13505 Outer membrane protein beta-barrel domain YPZ3_RS12830 PF00892 EamA-like transporter family YPZ3_RS12840 PF13649 Methyltransferase domain YPZ3_RS12845 PF00210 Ferritin-like domain YPZ3_RS12855 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS12860 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS12865 PF00005 ABC transporter YPZ3_RS12870 PF13426 PAS domain YPZ3_RS12870 PF08447 PAS fold YPZ3_RS12870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_RS12875 PF00665 Integrase core domain YPZ3_RS12875 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS12880 PF01695 IstB-like ATP binding protein YPZ3_RS12885 PF07730 Histidine kinase YPZ3_RS12885 PF05231 MASE1 YPZ3_RS12885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS12890 PF07690 Major Facilitator Superfamily YPZ3_RS12900 PF13332 Hemagglutinin repeat YPZ3_RS12900 PF04829 Pre-toxin domain with VENN motif YPZ3_RS12900 PF05860 haemagglutination activity domain YPZ3_RS12900 PF05594 Haemagluttinin repeat YPZ3_RS12905 PF08479 POTRA domain, ShlB-type YPZ3_RS12905 PF17287 POTRA domain YPZ3_RS12905 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_RS12915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_RS12920 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS12925 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_RS12925 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS12930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_RS12930 PF00005 ABC transporter YPZ3_RS12935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_RS12935 PF00005 ABC transporter YPZ3_RS12940 PF01270 Glycosyl hydrolases family 8 YPZ3_RS12945 PF00672 HAMP domain YPZ3_RS12945 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_RS12945 PF17154 Gammaproteobacterial periplasmic sensor domain YPZ3_RS12945 PF00563 EAL domain YPZ3_RS12950 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPZ3_RS12955 PF06917 Periplasmic pectate lyase YPZ3_RS12965 PF00375 Sodium:dicarboxylate symporter family YPZ3_RS12970 PF00675 Insulinase (Peptidase family M16) YPZ3_RS12970 PF05193 Peptidase M16 inactive domain YPZ3_RS12975 PF00294 pfkB family carbohydrate kinase YPZ3_RS12980 PF01361 Tautomerase enzyme YPZ3_RS12985 PF00563 EAL domain YPZ3_RS12990 PF05170 AsmA family YPZ3_RS12995 PF02611 CDP-diacylglycerol pyrophosphatase YPZ3_RS13000 PF03631 Virulence factor BrkB YPZ3_RS13025 PF02595 Glycerate kinase family YPZ3_RS13030 PF02447 GntP family permease YPZ3_RS13035 PF05651 Putative sugar diacid recognition YPZ3_RS13035 PF17853 GGDEF-like domain YPZ3_RS13035 PF13556 PucR C-terminal helix-turn-helix domain YPZ3_RS13040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_RS13040 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS13045 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPZ3_RS13050 PF01432 Peptidase family M3 YPZ3_RS13055 PF04445 Putative SAM-dependent methyltransferase YPZ3_RS13060 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPZ3_RS13060 PF00413 Matrixin YPZ3_RS13060 PF08548 Peptidase M10 serralysin C terminal YPZ3_RS13065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPZ3_RS13065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPZ3_RS13070 PF00582 Universal stress protein family YPZ3_RS13075 PF10625 Universal stress protein B (UspB) YPZ3_RS13090 PF01384 Phosphate transporter family YPZ3_RS13100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS13100 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS13100 PF08448 PAS fold YPZ3_RS13100 PF00072 Response regulator receiver domain YPZ3_RS13100 PF13188 PAS domain YPZ3_RS13105 PF00005 ABC transporter YPZ3_RS13110 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS13115 PF13407 Periplasmic binding protein domain YPZ3_RS13125 PF01116 Fructose-bisphosphate aldolase class-II YPZ3_RS13135 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS13135 PF00072 Response regulator receiver domain YPZ3_RS13145 PF17954 Quercetinase C-terminal cupin domain YPZ3_RS13145 PF02678 Pirin YPZ3_RS13150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_RS13150 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS13155 PF02447 GntP family permease YPZ3_RS13160 PF01202 Shikimate kinase YPZ3_RS13180 PF01914 MarC family integral membrane protein YPZ3_RS13185 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPZ3_RS13185 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPZ3_RS13210 PF07979 Intimin C-type lectin domain YPZ3_RS13210 PF02369 Bacterial Ig-like domain (group 1) YPZ3_RS13210 PF11924 Inverse autotransporter, beta-domain YPZ3_RS13210 PF09134 Invasin, domain 3 YPZ3_RS13215 PF07694 5TMR of 5TMR-LYT YPZ3_RS13215 PF06580 Histidine kinase YPZ3_RS13225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPZ3_RS13225 PF00128 Alpha amylase, catalytic domain YPZ3_RS13225 PF18390 Glycogen debranching enzyme C-terminal domain YPZ3_RS13230 PF00483 Nucleotidyl transferase YPZ3_RS13235 PF08323 Starch synthase catalytic domain YPZ3_RS13235 PF00534 Glycosyl transferases group 1 YPZ3_RS13240 PF00343 Carbohydrate phosphorylase YPZ3_RS13245 PF01266 FAD dependent oxidoreductase YPZ3_RS13245 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPZ3_RS13265 PF00665 Integrase core domain YPZ3_RS13265 PF13276 HTH-like domain YPZ3_RS13265 PF13333 Integrase core domain YPZ3_RS13275 PF00665 Integrase core domain YPZ3_RS13275 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS13280 PF01695 IstB-like ATP binding protein YPZ3_RS13285 PF05971 RNA methyltransferase YPZ3_RS13290 PF07338 Protein of unknown function (DUF1471) YPZ3_RS13295 PF02885 Glycosyl transferase family, helical bundle domain YPZ3_RS13300 PF13193 AMP-binding enzyme C-terminal domain YPZ3_RS13300 PF00501 AMP-binding enzyme YPZ3_RS13305 PF13378 Enolase C-terminal domain-like YPZ3_RS13310 PF00378 Enoyl-CoA hydratase/isomerase YPZ3_RS13315 PF12697 Alpha/beta hydrolase family YPZ3_RS13320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_RS13320 PF16582 Middle domain of thiamine pyrophosphate YPZ3_RS13320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_RS13325 PF00425 chorismate binding enzyme YPZ3_RS13335 PF05957 Bacterial protein of unknown function (DUF883) YPZ3_RS13350 PF00920 Dehydratase family YPZ3_RS13355 PF03928 Haem-degrading YPZ3_RS13360 PF07690 Major Facilitator Superfamily YPZ3_RS13365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_RS13365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_RS13375 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS13380 PF02638 Glycosyl hydrolase-like 10 YPZ3_RS13385 PF00106 short chain dehydrogenase YPZ3_RS13390 PF01202 Shikimate kinase YPZ3_RS13395 PF04074 YhcH/YjgK/YiaL YPZ3_RS13405 PF00361 Proton-conducting membrane transporter YPZ3_RS13410 PF00361 Proton-conducting membrane transporter YPZ3_RS13415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPZ3_RS13415 PF00361 Proton-conducting membrane transporter YPZ3_RS13420 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPZ3_RS13425 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPZ3_RS13430 PF12838 4Fe-4S dicluster domain YPZ3_RS13435 PF00146 NADH dehydrogenase YPZ3_RS13440 PF00384 Molybdopterin oxidoreductase YPZ3_RS13440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_RS13440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPZ3_RS13440 PF01568 Molydopterin dinucleotide binding domain YPZ3_RS13445 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPZ3_RS13445 PF10531 SLBB domain YPZ3_RS13445 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPZ3_RS13455 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPZ3_RS13455 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPZ3_RS13460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPZ3_RS13465 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPZ3_RS13470 PF03466 LysR substrate binding domain YPZ3_RS13470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS13480 PF00155 Aminotransferase class I and II YPZ3_RS13495 PF03600 Citrate transporter YPZ3_RS13495 PF02080 TrkA-C domain YPZ3_RS13500 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS13505 PF03887 YfbU domain YPZ3_RS13510 PF04217 Protein of unknown function, DUF412 YPZ3_RS13520 PF00871 Acetokinase family YPZ3_RS13525 PF01515 Phosphate acetyl/butaryl transferase YPZ3_RS13525 PF07085 DRTGG domain YPZ3_RS13530 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS13530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPZ3_RS13535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_RS13545 PF00872 Transposase, Mutator family YPZ3_RS13550 PF00905 Penicillin binding protein transpeptidase domain YPZ3_RS13550 PF06832 Penicillin-Binding Protein C-terminus Family YPZ3_RS13550 PF00912 Transglycosylase YPZ3_RS13555 PF01835 MG2 domain YPZ3_RS13555 PF17962 Bacterial macroglobulin domain 6 YPZ3_RS13555 PF07703 Alpha-2-macroglobulin bait region domain YPZ3_RS13555 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPZ3_RS13555 PF00207 Alpha-2-macroglobulin family YPZ3_RS13555 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPZ3_RS13555 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPZ3_RS13570 PF00171 Aldehyde dehydrogenase family YPZ3_RS13575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_RS13575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_RS13575 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_RS13585 PF13407 Periplasmic binding protein domain YPZ3_RS13590 PF00005 ABC transporter YPZ3_RS13595 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS13600 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_RS13600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_RS13605 PF00294 pfkB family carbohydrate kinase YPZ3_RS13610 PF01261 Xylose isomerase-like TIM barrel YPZ3_RS13615 PF04962 KduI/IolB family YPZ3_RS13625 PF00664 ABC transporter transmembrane region YPZ3_RS13625 PF00005 ABC transporter YPZ3_RS13650 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS13660 PF00313 'Cold-shock' DNA-binding domain YPZ3_RS13665 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPZ3_RS13675 PF02416 mttA/Hcf106 family YPZ3_RS13680 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPZ3_RS13680 PF04055 Radical SAM superfamily YPZ3_RS13685 PF03099 Biotin/lipoate A/B protein ligase family YPZ3_RS13690 PF04359 Protein of unknown function (DUF493) YPZ3_RS13695 PF07943 Penicillin-binding protein 5, C-terminal domain YPZ3_RS13695 PF00768 D-alanyl-D-alanine carboxypeptidase YPZ3_RS13705 PF01098 Cell cycle protein YPZ3_RS13710 PF03717 Penicillin-binding Protein dimerisation domain YPZ3_RS13710 PF00905 Penicillin binding protein transpeptidase domain YPZ3_RS13715 PF02590 Predicted SPOUT methyltransferase YPZ3_RS13725 PF01467 Cytidylyltransferase-like YPZ3_RS13730 PF06144 DNA polymerase III, delta subunit YPZ3_RS13730 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPZ3_RS13735 PF04390 Lipopolysaccharide-assembly YPZ3_RS13740 PF08264 Anticodon-binding domain of tRNA YPZ3_RS13740 PF00133 tRNA synthetases class I (I, L, M and V) YPZ3_RS13740 PF13603 Leucyl-tRNA synthetase, Domain 2 YPZ3_RS13745 PF07295 Zinc-ribbon containing domain YPZ3_RS13750 PF00005 ABC transporter YPZ3_RS13755 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS13760 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS13765 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS13770 PF00795 Carbon-nitrogen hydrolase YPZ3_RS13775 PF00571 CBS domain YPZ3_RS13775 PF03471 Transporter associated domain YPZ3_RS13780 PF02130 Uncharacterized protein family UPF0054 YPZ3_RS13785 PF02562 PhoH-like protein YPZ3_RS13790 PF01938 TRAM domain YPZ3_RS13790 PF04055 Radical SAM superfamily YPZ3_RS13790 PF00919 Uncharacterized protein family UPF0004 YPZ3_RS13795 PF01494 FAD binding domain YPZ3_RS13830 PF00733 Asparagine synthase YPZ3_RS13830 PF13537 Glutamine amidotransferase domain YPZ3_RS13835 PF13344 Haloacid dehalogenase-like hydrolase YPZ3_RS13840 PF00480 ROK family YPZ3_RS13840 PF01047 MarR family YPZ3_RS13845 PF01979 Amidohydrolase family YPZ3_RS13850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPZ3_RS13860 PF01797 Transposase IS200 like YPZ3_RS13865 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPZ3_RS13865 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPZ3_RS13870 PF03573 outer membrane porin, OprD family YPZ3_RS13880 PF01475 Ferric uptake regulator family YPZ3_RS13885 PF00258 Flavodoxin YPZ3_RS13890 PF01402 Ribbon-helix-helix protein, copG family YPZ3_RS13900 PF12697 Alpha/beta hydrolase family YPZ3_RS13910 PF13356 Arm DNA-binding domain YPZ3_RS13910 PF00589 Phage integrase family YPZ3_RS13915 PF01527 Transposase YPZ3_RS13920 PF13356 Arm DNA-binding domain YPZ3_RS13920 PF00589 Phage integrase family YPZ3_RS13925 PF01695 IstB-like ATP binding protein YPZ3_RS13930 PF00665 Integrase core domain YPZ3_RS13930 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS13940 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPZ3_RS13945 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS13950 PF00571 CBS domain YPZ3_RS13950 PF00005 ABC transporter YPZ3_RS13955 PF00268 Ribonucleotide reductase, small chain YPZ3_RS13960 PF00317 Ribonucleotide reductase, all-alpha domain YPZ3_RS13960 PF02867 Ribonucleotide reductase, barrel domain YPZ3_RS13960 PF08343 Ribonucleotide reductase N-terminal YPZ3_RS13965 PF07972 NrdI Flavodoxin like YPZ3_RS13975 PF06392 Acid shock protein repeat YPZ3_RS13980 PF09400 Protein of unknown function (DUF2002) YPZ3_RS13985 PF06711 Protein of unknown function (DUF1198) YPZ3_RS13995 PF00313 'Cold-shock' DNA-binding domain YPZ3_RS14000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_RS14005 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS14010 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS14010 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_RS14015 PF00005 ABC transporter YPZ3_RS14020 PF00005 ABC transporter YPZ3_RS14025 PF00547 Urease, gamma subunit YPZ3_RS14030 PF00699 Urease beta subunit YPZ3_RS14035 PF00449 Urease alpha-subunit, N-terminal domain YPZ3_RS14035 PF01979 Amidohydrolase family YPZ3_RS14040 PF02814 UreE urease accessory protein, N-terminal domain YPZ3_RS14040 PF05194 UreE urease accessory protein, C-terminal domain YPZ3_RS14045 PF01730 UreF YPZ3_RS14050 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPZ3_RS14055 PF01774 UreD urease accessory protein YPZ3_RS14060 PF03253 Urea transporter YPZ3_RS14065 PF03824 High-affinity nickel-transport protein YPZ3_RS14070 PF06411 HdeA/HdeB family YPZ3_RS14080 PF02254 TrkA-N domain YPZ3_RS14080 PF07885 Ion channel YPZ3_RS14085 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPZ3_RS14090 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPZ3_RS14100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_RS14105 PF02378 Phosphotransferase system, EIIC YPZ3_RS14110 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPZ3_RS14115 PF07883 Cupin domain YPZ3_RS14115 PF12833 Helix-turn-helix domain YPZ3_RS14120 PF04794 YdjC-like protein YPZ3_RS14135 PF17206 SeqA protein N-terminal domain YPZ3_RS14135 PF03925 SeqA protein C-terminal domain YPZ3_RS14140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPZ3_RS14140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPZ3_RS14140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPZ3_RS14140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPZ3_RS14160 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS14160 PF00072 Response regulator receiver domain YPZ3_RS14165 PF13493 Domain of unknown function (DUF4118) YPZ3_RS14165 PF13492 GAF domain YPZ3_RS14165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS14165 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS14165 PF02702 Osmosensitive K+ channel His kinase sensor domain YPZ3_RS14170 PF02669 K+-transporting ATPase, c chain YPZ3_RS14180 PF03814 Potassium-transporting ATPase A subunit YPZ3_RS14195 PF10725 Protein of unknown function (DUF2517) YPZ3_RS14200 PF08349 Protein of unknown function (DUF1722) YPZ3_RS14205 PF03441 FAD binding domain of DNA photolyase YPZ3_RS14205 PF00875 DNA photolyase YPZ3_RS14210 PF02112 cAMP phosphodiesterases class-II YPZ3_RS14215 PF01784 NIF3 (NGG1p interacting factor 3) YPZ3_RS14225 PF02626 Carboxyltransferase domain, subdomain A and B YPZ3_RS14230 PF03746 LamB/YcsF family YPZ3_RS14245 PF01470 Pyroglutamyl peptidase YPZ3_RS14250 PF03167 Uracil DNA glycosylase superfamily YPZ3_RS14255 PF01228 Glycine radical YPZ3_RS14270 PF12796 Ankyrin repeats (3 copies) YPZ3_RS14275 PF00270 DEAD/DEAH box helicase YPZ3_RS14275 PF00271 Helicase conserved C-terminal domain YPZ3_RS14280 PF05175 Methyltransferase small domain YPZ3_RS14285 PF02910 Fumarate reductase flavoprotein C-term YPZ3_RS14285 PF00890 FAD binding domain YPZ3_RS14290 PF08281 Sigma-70, region 4 YPZ3_RS14290 PF04542 Sigma-70 region 2 YPZ3_RS14295 PF03873 Anti sigma-E protein RseA, C-terminal domain YPZ3_RS14295 PF03872 Anti sigma-E protein RseA, N-terminal domain YPZ3_RS14300 PF17188 MucB/RseB C-terminal domain YPZ3_RS14300 PF03888 MucB/RseB N-terminal domain YPZ3_RS14315 PF00679 Elongation factor G C-terminus YPZ3_RS14315 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS14315 PF03144 Elongation factor Tu domain 2 YPZ3_RS14315 PF06421 GTP-binding protein LepA C-terminus YPZ3_RS14320 PF10502 Signal peptidase, peptidase S26 YPZ3_RS14325 PF00035 Double-stranded RNA binding motif YPZ3_RS14325 PF14622 Ribonuclease-III-like YPZ3_RS14330 PF07650 KH domain YPZ3_RS14330 PF01926 50S ribosome-binding GTPase YPZ3_RS14335 PF11967 Recombination protein O N terminal YPZ3_RS14335 PF02565 Recombination protein O C terminal YPZ3_RS14340 PF00665 Integrase core domain YPZ3_RS14340 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS14345 PF01695 IstB-like ATP binding protein YPZ3_RS14350 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPZ3_RS14355 PF01648 4'-phosphopantetheinyl transferase superfamily YPZ3_RS14365 PF01797 Transposase IS200 like YPZ3_RS14370 PF12838 4Fe-4S dicluster domain YPZ3_RS14375 PF01418 Helix-turn-helix domain, rpiR family YPZ3_RS14375 PF01380 SIS domain YPZ3_RS14380 PF01380 SIS domain YPZ3_RS14390 PF14437 MafB19-like deaminase YPZ3_RS14395 PF01464 Transglycosylase SLT domain YPZ3_RS14395 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS14400 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPZ3_RS14400 PF02769 AIR synthase related protein, C-terminal domain YPZ3_RS14400 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPZ3_RS14425 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS14425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS14430 PF13942 YfhG lipoprotein YPZ3_RS14435 PF00158 Sigma-54 interaction domain YPZ3_RS14435 PF00072 Response regulator receiver domain YPZ3_RS14440 PF00795 Carbon-nitrogen hydrolase YPZ3_RS14440 PF02540 NAD synthase YPZ3_RS14445 PF00543 Nitrogen regulatory protein P-II YPZ3_RS14450 PF14502 Helix-turn-helix domain YPZ3_RS14450 PF14503 YhfZ C-terminal domain YPZ3_RS14455 PF14502 Helix-turn-helix domain YPZ3_RS14455 PF14503 YhfZ C-terminal domain YPZ3_RS14460 PF00970 Oxidoreductase FAD-binding domain YPZ3_RS14460 PF00175 Oxidoreductase NAD-binding domain YPZ3_RS14460 PF00042 Globin YPZ3_RS14465 PF00464 Serine hydroxymethyltransferase YPZ3_RS14475 PF13505 Outer membrane protein beta-barrel domain YPZ3_RS14480 PF12832 MFS_1 like family YPZ3_RS14485 PF00874 PRD domain YPZ3_RS14490 PF06226 Protein of unknown function (DUF1007) YPZ3_RS14495 PF03824 High-affinity nickel-transport protein YPZ3_RS14500 PF01797 Transposase IS200 like YPZ3_RS14505 PF00459 Inositol monophosphatase family YPZ3_RS14510 PF00588 SpoU rRNA Methylase family YPZ3_RS14515 PF02082 Transcriptional regulator YPZ3_RS14520 PF00266 Aminotransferase class-V YPZ3_RS14525 PF01592 NifU-like N terminal domain YPZ3_RS14530 PF01521 Iron-sulphur cluster biosynthesis YPZ3_RS14535 PF00226 DnaJ domain YPZ3_RS14535 PF07743 HSCB C-terminal oligomerisation domain YPZ3_RS14540 PF00012 Hsp70 protein YPZ3_RS14545 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS14550 PF04384 Iron-sulphur cluster assembly YPZ3_RS14555 PF00883 Cytosol aminopeptidase family, catalytic domain YPZ3_RS14555 PF12404 Peptidase YPZ3_RS14560 PF07179 SseB protein N-terminal domain YPZ3_RS14560 PF14581 SseB protein C-terminal domain YPZ3_RS14570 PF03797 Autotransporter beta-domain YPZ3_RS14570 PF03212 Pertactin YPZ3_RS14570 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPZ3_RS14575 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPZ3_RS14575 PF03212 Pertactin YPZ3_RS14575 PF03797 Autotransporter beta-domain YPZ3_RS14590 PF00334 Nucleoside diphosphate kinase YPZ3_RS14595 PF04055 Radical SAM superfamily YPZ3_RS14605 PF13464 Domain of unknown function (DUF4115) YPZ3_RS14610 PF04551 GcpE protein YPZ3_RS14615 PF13393 Histidyl-tRNA synthetase YPZ3_RS14615 PF03129 Anticodon binding domain YPZ3_RS14620 PF09976 Tetratricopeptide repeat-like domain YPZ3_RS14625 PF13360 PQQ-like domain YPZ3_RS14630 PF01926 50S ribosome-binding GTPase YPZ3_RS14630 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPZ3_RS14640 PF07191 zinc-ribbons YPZ3_RS14645 PF13742 OB-fold nucleic acid binding domain YPZ3_RS14645 PF02601 Exonuclease VII, large subunit YPZ3_RS14650 PF00571 CBS domain YPZ3_RS14650 PF00478 IMP dehydrogenase / GMP reductase domain YPZ3_RS14660 PF02540 NAD synthase YPZ3_RS14660 PF00958 GMP synthase C terminal domain YPZ3_RS14660 PF00117 Glutamine amidotransferase class-I YPZ3_RS14670 PF01797 Transposase IS200 like YPZ3_RS14675 PF05638 Type VI secretion system effector, Hcp YPZ3_RS14705 PF00872 Transposase, Mutator family YPZ3_RS14720 PF08543 Phosphomethylpyrimidine kinase YPZ3_RS14735 PF00781 Diacylglycerol kinase catalytic domain YPZ3_RS14740 PF16325 Peptidase family U32 C-terminal domain YPZ3_RS14740 PF01136 Peptidase family U32 YPZ3_RS14745 PF07411 Domain of unknown function (DUF1508) YPZ3_RS14750 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS14750 PF00072 Response regulator receiver domain YPZ3_RS14755 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS14755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS14755 PF00672 HAMP domain YPZ3_RS14760 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS14760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS14760 PF00672 HAMP domain YPZ3_RS14765 PF07690 Major Facilitator Superfamily YPZ3_RS14770 PF00873 AcrB/AcrD/AcrF family YPZ3_RS14775 PF00873 AcrB/AcrD/AcrF family YPZ3_RS14780 PF13533 Biotin-lipoyl like YPZ3_RS14785 PF08402 TOBE domain YPZ3_RS14785 PF00005 ABC transporter YPZ3_RS14790 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS14790 PF00155 Aminotransferase class I and II YPZ3_RS14795 PF00202 Aminotransferase class-III YPZ3_RS14805 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS14810 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS14815 PF00012 Hsp70 protein YPZ3_RS14820 PF00571 CBS domain YPZ3_RS14820 PF01769 Divalent cation transporter YPZ3_RS14820 PF03448 MgtE intracellular N domain YPZ3_RS14830 PF02541 Ppx/GppA phosphatase family YPZ3_RS14835 PF02503 Polyphosphate kinase middle domain YPZ3_RS14835 PF17941 Polyphosphate kinase C-terminal domain 1 YPZ3_RS14835 PF13089 Polyphosphate kinase N-terminal domain YPZ3_RS14835 PF13090 Polyphosphate kinase C-terminal domain 2 YPZ3_RS14840 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS14845 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS14850 PF00005 ABC transporter YPZ3_RS14865 PF13302 Acetyltransferase (GNAT) domain YPZ3_RS14870 PF00551 Formyl transferase YPZ3_RS14875 PF00586 AIR synthase related protein, N-terminal domain YPZ3_RS14875 PF02769 AIR synthase related protein, C-terminal domain YPZ3_RS14885 PF01797 Transposase IS200 like YPZ3_RS14895 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPZ3_RS14895 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPZ3_RS14940 PF01066 CDP-alcohol phosphatidyltransferase YPZ3_RS14950 PF01553 Acyltransferase YPZ3_RS14955 PF12146 Serine aminopeptidase, S33 YPZ3_RS14955 PF12147 Putative methyltransferase YPZ3_RS14960 PF00782 Dual specificity phosphatase, catalytic domain YPZ3_RS14975 PF01695 IstB-like ATP binding protein YPZ3_RS14980 PF00665 Integrase core domain YPZ3_RS14980 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS14985 PF03466 LysR substrate binding domain YPZ3_RS14985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS14990 PF00248 Aldo/keto reductase family YPZ3_RS14995 PF00248 Aldo/keto reductase family YPZ3_RS15015 PF00933 Glycosyl hydrolase family 3 N terminal domain YPZ3_RS15015 PF14310 Fibronectin type III-like domain YPZ3_RS15015 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPZ3_RS15030 PF00872 Transposase, Mutator family YPZ3_RS15035 PF08007 Cupin superfamily protein YPZ3_RS15045 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPZ3_RS15045 PF03797 Autotransporter beta-domain YPZ3_RS15045 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS15045 PF03212 Pertactin YPZ3_RS15060 PF05638 Type VI secretion system effector, Hcp YPZ3_RS15080 PF13693 Winged helix-turn-helix DNA-binding YPZ3_RS15085 PF00905 Penicillin binding protein transpeptidase domain YPZ3_RS15085 PF00912 Transglycosylase YPZ3_RS15085 PF06832 Penicillin-Binding Protein C-terminus Family YPZ3_RS15090 PF00872 Transposase, Mutator family YPZ3_RS15100 PF00293 NUDIX domain YPZ3_RS15105 PF12850 Calcineurin-like phosphoesterase superfamily domain YPZ3_RS15115 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS15115 PF08338 Domain of unknown function (DUF1731) YPZ3_RS15120 PF00005 ABC transporter YPZ3_RS15125 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS15130 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS15135 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS15140 PF02441 Flavoprotein YPZ3_RS15145 PF00156 Phosphoribosyl transferase domain YPZ3_RS15150 PF02674 Colicin V production protein YPZ3_RS15155 PF05036 Sporulation related domain YPZ3_RS15160 PF02875 Mur ligase family, glutamate ligase domain YPZ3_RS15160 PF08245 Mur ligase middle domain YPZ3_RS15165 PF17848 Acetyl-coA carboxylase zinc finger domain YPZ3_RS15165 PF01039 Carboxyl transferase domain YPZ3_RS15170 PF09335 SNARE associated Golgi protein YPZ3_RS15175 PF01416 tRNA pseudouridine synthase YPZ3_RS15180 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPZ3_RS15180 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPZ3_RS15185 PF11890 Domain of unknown function (DUF3410) YPZ3_RS15185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_RS15185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_RS15200 PF00892 EamA-like transporter family YPZ3_RS15210 PF00419 Fimbrial protein YPZ3_RS15215 PF01177 Asp/Glu/Hydantoin racemase YPZ3_RS15220 PF00109 Beta-ketoacyl synthase, N-terminal domain YPZ3_RS15220 PF02801 Beta-ketoacyl synthase, C-terminal domain YPZ3_RS15225 PF01266 FAD dependent oxidoreductase YPZ3_RS15225 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPZ3_RS15230 PF08891 YfcL protein YPZ3_RS15235 PF04315 Elongation factor P hydroxylase YPZ3_RS15240 PF01925 Sulfite exporter TauE/SafE YPZ3_RS15245 PF03411 Penicillin-insensitive murein endopeptidase YPZ3_RS15250 PF01264 Chorismate synthase YPZ3_RS15255 PF05175 Methyltransferase small domain YPZ3_RS15260 PF01713 Smr domain YPZ3_RS15265 PF00300 Histidine phosphatase superfamily (branch 1) YPZ3_RS15270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPZ3_RS15270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPZ3_RS15270 PF00378 Enoyl-CoA hydratase/isomerase YPZ3_RS15275 PF00108 Thiolase, N-terminal domain YPZ3_RS15275 PF02803 Thiolase, C-terminal domain YPZ3_RS15280 PF04175 Protein of unknown function (DUF406) YPZ3_RS15285 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPZ3_RS15290 PF04333 MlaA lipoprotein YPZ3_RS15295 PF03918 Cytochrome C biogenesis protein YPZ3_RS15300 PF03918 Cytochrome C biogenesis protein YPZ3_RS15305 PF08534 Redoxin YPZ3_RS15310 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPZ3_RS15310 PF01578 Cytochrome C assembly protein YPZ3_RS15315 PF03100 CcmE YPZ3_RS15320 PF04995 Heme exporter protein D (CcmD) YPZ3_RS15325 PF01578 Cytochrome C assembly protein YPZ3_RS15330 PF03379 CcmB protein YPZ3_RS15335 PF00005 ABC transporter YPZ3_RS15350 PF04011 LemA family YPZ3_RS15360 PF08274 PhnA Zinc-Ribbon YPZ3_RS15360 PF03831 PhnA domain YPZ3_RS15375 PF07024 ImpE protein YPZ3_RS15390 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_RS15395 PF06761 Intracellular multiplication and human macrophage-killing YPZ3_RS15395 PF14331 ImcF-related N-terminal domain YPZ3_RS15395 PF06744 Type VI secretion protein IcmF C-terminal YPZ3_RS15405 PF01695 IstB-like ATP binding protein YPZ3_RS15410 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS15410 PF00665 Integrase core domain YPZ3_RS15420 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPZ3_RS15435 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPZ3_RS15440 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPZ3_RS15450 PF13953 PapC C-terminal domain YPZ3_RS15450 PF00577 Outer membrane usher protein YPZ3_RS15450 PF13954 PapC N-terminal domain YPZ3_RS15455 PF00872 Transposase, Mutator family YPZ3_RS15460 PF13953 PapC C-terminal domain YPZ3_RS15460 PF13954 PapC N-terminal domain YPZ3_RS15460 PF00577 Outer membrane usher protein YPZ3_RS15465 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_RS15465 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS15470 PF16970 Type-1 fimbrial protein, A YPZ3_RS15475 PF17871 AAA lid domain YPZ3_RS15475 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS15475 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS15475 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS15480 PF05947 Type VI secretion system, TssF YPZ3_RS15525 PF13406 Transglycosylase SLT domain YPZ3_RS15535 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS15540 PF00005 ABC transporter YPZ3_RS15550 PF05638 Type VI secretion system effector, Hcp YPZ3_RS15560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_RS15560 PF00384 Molybdopterin oxidoreductase YPZ3_RS15560 PF01568 Molydopterin dinucleotide binding domain YPZ3_RS15565 PF13247 4Fe-4S dicluster domain YPZ3_RS15565 PF12800 4Fe-4S binding domain YPZ3_RS15570 PF04976 DMSO reductase anchor subunit (DmsC) YPZ3_RS15575 PF02613 Nitrate reductase delta subunit YPZ3_RS15585 PF05643 Putative bacterial lipoprotein (DUF799) YPZ3_RS15595 PF03783 Curli production assembly/transport component CsgG YPZ3_RS15605 PF01292 Prokaryotic cytochrome b561 YPZ3_RS15610 PF00155 Aminotransferase class I and II YPZ3_RS15615 PF07350 Protein of unknown function (DUF1479) YPZ3_RS15620 PF02685 Glucokinase YPZ3_RS15630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS15630 PF03466 LysR substrate binding domain YPZ3_RS15635 PF00248 Aldo/keto reductase family YPZ3_RS15645 PF01566 Natural resistance-associated macrophage protein YPZ3_RS15650 PF07670 Nucleoside recognition YPZ3_RS15650 PF01773 Na+ dependent nucleoside transporter N-terminus YPZ3_RS15650 PF07662 Na+ dependent nucleoside transporter C-terminus YPZ3_RS15675 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPZ3_RS15705 PF12843 Putative quorum-sensing-regulated virulence factor YPZ3_RS15710 PF03120 NAD-dependent DNA ligase OB-fold domain YPZ3_RS15710 PF00533 BRCA1 C Terminus (BRCT) domain YPZ3_RS15710 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPZ3_RS15710 PF12826 Helix-hairpin-helix motif YPZ3_RS15710 PF01653 NAD-dependent DNA ligase adenylation domain YPZ3_RS15715 PF04354 ZipA, C-terminal FtsZ-binding domain YPZ3_RS15725 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_RS15730 PF00381 PTS HPr component phosphorylation site YPZ3_RS15735 PF05524 PEP-utilising enzyme, N-terminal YPZ3_RS15735 PF00391 PEP-utilising enzyme, mobile domain YPZ3_RS15735 PF02896 PEP-utilising enzyme, TIM barrel domain YPZ3_RS15740 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPZ3_RS15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS15755 PF00672 HAMP domain YPZ3_RS15755 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS15755 PF16527 Two-component sensor protein CpxA, periplasmic domain YPZ3_RS15760 PF00072 Response regulator receiver domain YPZ3_RS15760 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS15765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS15770 PF00005 ABC transporter YPZ3_RS15770 PF02687 FtsX-like permease family YPZ3_RS15770 PF12704 MacB-like periplasmic core domain YPZ3_RS15775 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS15775 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_RS15780 PF00474 Sodium:solute symporter family YPZ3_RS15790 PF00557 Metallopeptidase family M24 YPZ3_RS15800 PF00155 Aminotransferase class I and II YPZ3_RS15810 PF00672 HAMP domain YPZ3_RS15810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS15810 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS15815 PF00072 Response regulator receiver domain YPZ3_RS15815 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS15825 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_RS15830 PF00005 ABC transporter YPZ3_RS15835 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS15840 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS15850 PF07690 Major Facilitator Superfamily YPZ3_RS15855 PF01418 Helix-turn-helix domain, rpiR family YPZ3_RS15855 PF01380 SIS domain YPZ3_RS15865 PF04074 YhcH/YjgK/YiaL YPZ3_RS15870 PF00480 ROK family YPZ3_RS15875 PF12468 Type III secretion system leucine rich repeat protein YPZ3_RS15880 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPZ3_RS15885 PF00701 Dihydrodipicolinate synthetase family YPZ3_RS15890 PF04261 Dyp-type peroxidase family YPZ3_RS15895 PF06572 Protein of unknown function (DUF1131) YPZ3_RS15900 PF04076 Bacterial OB fold (BOF) protein YPZ3_RS15905 PF03797 Autotransporter beta-domain YPZ3_RS15905 PF13018 Extended Signal Peptide of Type V secretion system YPZ3_RS15905 PF03212 Pertactin YPZ3_RS15905 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPZ3_RS15920 PF00583 Acetyltransferase (GNAT) family YPZ3_RS15925 PF01218 Coproporphyrinogen III oxidase YPZ3_RS15930 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPZ3_RS15935 PF00390 Malic enzyme, N-terminal domain YPZ3_RS15935 PF03949 Malic enzyme, NAD binding domain YPZ3_RS15935 PF01515 Phosphate acetyl/butaryl transferase YPZ3_RS15940 PF00293 NUDIX domain YPZ3_RS15945 PF03264 NapC/NirT cytochrome c family, N-terminal region YPZ3_RS15950 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPZ3_RS15955 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPZ3_RS15955 PF01568 Molydopterin dinucleotide binding domain YPZ3_RS15955 PF00384 Molybdopterin oxidoreductase YPZ3_RS15955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_RS15960 PF03927 NapD protein YPZ3_RS15965 PF12800 4Fe-4S binding domain YPZ3_RS15965 PF00037 4Fe-4S binding domain YPZ3_RS15965 PF13187 4Fe-4S dicluster domain YPZ3_RS15970 PF00072 Response regulator receiver domain YPZ3_RS15970 PF00196 Bacterial regulatory proteins, luxR family YPZ3_RS15980 PF00873 AcrB/AcrD/AcrF family YPZ3_RS15990 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPZ3_RS15995 PF13186 Iron-sulfur cluster-binding domain YPZ3_RS15995 PF04055 Radical SAM superfamily YPZ3_RS16000 PF00884 Sulfatase YPZ3_RS16005 PF00005 ABC transporter YPZ3_RS16005 PF08402 TOBE domain YPZ3_RS16010 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS16025 PF03960 ArsC family YPZ3_RS16030 PF07687 Peptidase dimerisation domain YPZ3_RS16030 PF01546 Peptidase family M20/M25/M40 YPZ3_RS16035 PF02557 D-alanyl-D-alanine carboxypeptidase YPZ3_RS16040 PF13980 Uncharacterised protein family (UPF0370) YPZ3_RS16045 PF08351 Domain of unknown function (DUF1726) YPZ3_RS16045 PF17176 tRNA-binding domain YPZ3_RS16045 PF13718 GNAT acetyltransferase 2 YPZ3_RS16045 PF05127 Helicase YPZ3_RS16050 PF04284 Protein of unknown function (DUF441) YPZ3_RS16055 PF04228 Putative neutral zinc metallopeptidase YPZ3_RS16060 PF01259 SAICAR synthetase YPZ3_RS16065 PF01797 Transposase IS200 like YPZ3_RS16075 PF06804 NlpB/DapX lipoprotein YPZ3_RS16080 PF00701 Dihydrodipicolinate synthetase family YPZ3_RS16085 PF01842 ACT domain YPZ3_RS16090 PF00578 AhpC/TSA family YPZ3_RS16110 PF01594 AI-2E family transporter YPZ3_RS16115 PF01435 Peptidase family M48 YPZ3_RS16115 PF07720 Tetratricopeptide repeat YPZ3_RS16120 PF03960 ArsC family YPZ3_RS16125 PF00308 Bacterial dnaA protein YPZ3_RS16130 PF01797 Transposase IS200 like YPZ3_RS16140 PF09190 DALR domain YPZ3_RS16140 PF01406 tRNA synthetases class I (C) catalytic domain YPZ3_RS16145 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPZ3_RS16150 PF00149 Calcineurin-like phosphoesterase YPZ3_RS16155 PF00731 AIR carboxylase YPZ3_RS16160 PF02222 ATP-grasp domain YPZ3_RS16160 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPZ3_RS16170 PF00005 ABC transporter YPZ3_RS16175 PF13472 GDSL-like Lipase/Acylhydrolase family YPZ3_RS16180 PF00106 short chain dehydrogenase YPZ3_RS16185 PF00085 Thioredoxin YPZ3_RS16190 PF16200 C-terminal region of band_7 YPZ3_RS16190 PF01145 SPFH domain / Band 7 family YPZ3_RS16195 PF01957 NfeD-like C-terminal, partner-binding YPZ3_RS16200 PF13411 MerR HTH family regulatory protein YPZ3_RS16205 PF00403 Heavy-metal-associated domain YPZ3_RS16210 PF01963 TraB family YPZ3_RS16215 PF04073 Aminoacyl-tRNA editing domain YPZ3_RS16230 PF00149 Calcineurin-like phosphoesterase YPZ3_RS16230 PF02872 5'-nucleotidase, C-terminal domain YPZ3_RS16235 PF02872 5'-nucleotidase, C-terminal domain YPZ3_RS16235 PF00149 Calcineurin-like phosphoesterase YPZ3_RS16240 PF00149 Calcineurin-like phosphoesterase YPZ3_RS16240 PF02872 5'-nucleotidase, C-terminal domain YPZ3_RS16245 PF07690 Major Facilitator Superfamily YPZ3_RS16250 PF02254 TrkA-N domain YPZ3_RS16250 PF00999 Sodium/hydrogen exchanger family YPZ3_RS16255 PF00294 pfkB family carbohydrate kinase YPZ3_RS16260 PF02706 Chain length determinant protein YPZ3_RS16265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPZ3_RS16265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPZ3_RS16265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPZ3_RS16265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPZ3_RS16270 PF00535 Glycosyl transferase family 2 YPZ3_RS16275 PF01050 Mannose-6-phosphate isomerase YPZ3_RS16275 PF00483 Nucleotidyl transferase YPZ3_RS16280 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS16290 PF00534 Glycosyl transferases group 1 YPZ3_RS16290 PF13439 Glycosyltransferase Family 4 YPZ3_RS16320 PF01370 NAD dependent epimerase/dehydratase family YPZ3_RS16325 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPZ3_RS16330 PF16363 GDP-mannose 4,6 dehydratase YPZ3_RS16335 PF16363 GDP-mannose 4,6 dehydratase YPZ3_RS16340 PF00483 Nucleotidyl transferase YPZ3_RS16345 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS16345 PF00970 Oxidoreductase FAD-binding domain YPZ3_RS16345 PF00175 Oxidoreductase NAD-binding domain YPZ3_RS16350 PF00762 Ferrochelatase YPZ3_RS16355 PF05191 Adenylate kinase, active site lid YPZ3_RS16360 PF00183 Hsp90 protein YPZ3_RS16360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS16365 PF13662 Toprim domain YPZ3_RS16365 PF02132 RecR protein YPZ3_RS16370 PF02575 YbaB/EbfC DNA-binding family YPZ3_RS16375 PF12169 DNA polymerase III subunits gamma and tau domain III YPZ3_RS16375 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPZ3_RS16375 PF12170 DNA polymerase III tau subunit V interacting with alpha YPZ3_RS16380 PF00156 Phosphoribosyl transferase domain YPZ3_RS16395 PF10689 Protein of unknown function (DUF2496) YPZ3_RS16400 PF12795 Mechanosensitive ion channel porin domain YPZ3_RS16400 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPZ3_RS16400 PF00924 Mechanosensitive ion channel YPZ3_RS16405 PF02635 DsrE/DsrF-like family YPZ3_RS16410 PF08361 MAATS-type transcriptional repressor, C-terminal region YPZ3_RS16410 PF00440 Bacterial regulatory proteins, tetR family YPZ3_RS16415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS16415 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_RS16420 PF00873 AcrB/AcrD/AcrF family YPZ3_RS16425 PF01197 Ribosomal protein L31 YPZ3_RS16430 PF00444 Ribosomal protein L36 YPZ3_RS16440 PF10757 Biofilm formation regulator YbaJ YPZ3_RS16445 PF05321 Haemolysin expression modulating protein YPZ3_RS16450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPZ3_RS16455 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPZ3_RS16465 PF00909 Ammonium Transporter Family YPZ3_RS16470 PF00543 Nitrogen regulatory protein P-II YPZ3_RS16475 PF00664 ABC transporter transmembrane region YPZ3_RS16475 PF00005 ABC transporter YPZ3_RS16480 PF00664 ABC transporter transmembrane region YPZ3_RS16480 PF00005 ABC transporter YPZ3_RS16485 PF01037 Lrp/AsnC ligand binding domain YPZ3_RS16485 PF13404 AsnC-type helix-turn-helix domain YPZ3_RS16490 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_RS16500 PF12793 Sugar transport-related sRNA regulator N-term YPZ3_RS16500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPZ3_RS16505 PF06508 Queuosine biosynthesis protein QueC YPZ3_RS16520 PF13145 PPIC-type PPIASE domain YPZ3_RS16525 PF00216 Bacterial DNA-binding protein YPZ3_RS16530 PF05362 Lon protease (S16) C-terminal proteolytic domain YPZ3_RS16530 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPZ3_RS16530 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS16535 PF06689 ClpX C4-type zinc finger YPZ3_RS16535 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS16535 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS16540 PF00574 Clp protease YPZ3_RS16545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_RS16545 PF05698 Bacterial trigger factor protein (TF) C-terminus YPZ3_RS16545 PF05697 Bacterial trigger factor protein (TF) YPZ3_RS16555 PF01722 BolA-like protein YPZ3_RS16560 PF03923 Uncharacterized lipoprotein YPZ3_RS16560 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPZ3_RS16565 PF07690 Major Facilitator Superfamily YPZ3_RS16570 PF03502 Nucleoside-specific channel-forming protein, Tsx YPZ3_RS16575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPZ3_RS16575 PF06481 COX Aromatic Rich Motif YPZ3_RS16580 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPZ3_RS16585 PF00510 Cytochrome c oxidase subunit III YPZ3_RS16590 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPZ3_RS16595 PF01040 UbiA prenyltransferase family YPZ3_RS16600 PF07690 Major Facilitator Superfamily YPZ3_RS16605 PF04461 Protein of unknown function (DUF520) YPZ3_RS16610 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPZ3_RS16610 PF02558 Ketopantoate reductase PanE/ApbA YPZ3_RS16615 PF01965 DJ-1/PfpI family YPZ3_RS16620 PF02568 Thiamine biosynthesis protein (ThiI) YPZ3_RS16620 PF02926 THUMP domain YPZ3_RS16630 PF02609 Exonuclease VII small subunit YPZ3_RS16635 PF00348 Polyprenyl synthetase YPZ3_RS16640 PF02780 Transketolase, C-terminal domain YPZ3_RS16640 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPZ3_RS16640 PF02779 Transketolase, pyrimidine binding domain YPZ3_RS16655 PF04608 Phosphatidylglycerophosphatase A YPZ3_RS16660 PF00586 AIR synthase related protein, N-terminal domain YPZ3_RS16660 PF02769 AIR synthase related protein, C-terminal domain YPZ3_RS16665 PF01029 NusB family YPZ3_RS16670 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPZ3_RS16675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPZ3_RS16675 PF01872 RibD C-terminal domain YPZ3_RS16680 PF03477 ATP cone domain YPZ3_RS16700 PF02355 Protein export membrane protein YPZ3_RS16700 PF07549 SecD/SecF GG Motif YPZ3_RS16705 PF07549 SecD/SecF GG Motif YPZ3_RS16705 PF13721 SecD export protein N-terminal TM region YPZ3_RS16705 PF02355 Protein export membrane protein YPZ3_RS16710 PF02699 Preprotein translocase subunit YPZ3_RS16715 PF01702 Queuine tRNA-ribosyltransferase YPZ3_RS16720 PF02547 Queuosine biosynthesis protein YPZ3_RS16725 PF04336 Acyl carrier protein phosphodiesterase YPZ3_RS16730 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPZ3_RS16730 PF00578 AhpC/TSA family YPZ3_RS16735 PF01797 Transposase IS200 like YPZ3_RS16760 PF00128 Alpha amylase, catalytic domain YPZ3_RS16760 PF02903 Alpha amylase, N-terminal ig-like domain YPZ3_RS16765 PF00324 Amino acid permease YPZ3_RS16770 PF05525 Branched-chain amino acid transport protein YPZ3_RS16775 PF12849 PBP superfamily domain YPZ3_RS16780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS16780 PF11808 Phosphate regulon sensor protein PhoR YPZ3_RS16780 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS16780 PF00989 PAS fold YPZ3_RS16785 PF00072 Response regulator receiver domain YPZ3_RS16785 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS16795 PF00149 Calcineurin-like phosphoesterase YPZ3_RS16795 PF12320 Type 5 capsule protein repressor C-terminal domain YPZ3_RS16800 PF13476 AAA domain YPZ3_RS16805 PF00480 ROK family YPZ3_RS16810 PF04381 Putative exonuclease, RdgC YPZ3_RS16815 PF06865 Pyrimidine/purine nucleoside phosphorylase YPZ3_RS16825 PF01202 Shikimate kinase YPZ3_RS16840 PF08241 Methyltransferase domain YPZ3_RS16850 PF07238 PilZ domain YPZ3_RS16850 PF07317 Flagellar regulator YcgR YPZ3_RS16855 PF00171 Aldehyde dehydrogenase family YPZ3_RS16860 PF01472 PUA domain YPZ3_RS16860 PF00696 Amino acid kinase family YPZ3_RS16865 PF07417 Sigma factor-binding transcriptional regulator Crl YPZ3_RS16870 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) YPZ3_RS16875 PF00156 Phosphoribosyl transferase domain YPZ3_RS16900 PF01546 Peptidase family M20/M25/M40 YPZ3_RS16900 PF07687 Peptidase dimerisation domain YPZ3_RS16905 PF11798 IMS family HHH motif YPZ3_RS16905 PF11799 impB/mucB/samB family C-terminal domain YPZ3_RS16905 PF00817 impB/mucB/samB family YPZ3_RS16910 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_RS16920 PF02424 ApbE family YPZ3_RS16925 PF00111 2Fe-2S iron-sulfur cluster binding domain YPZ3_RS16925 PF00970 Oxidoreductase FAD-binding domain YPZ3_RS16925 PF00175 Oxidoreductase NAD-binding domain YPZ3_RS16930 PF02508 Rnf-Nqr subunit, membrane protein YPZ3_RS16935 PF02508 Rnf-Nqr subunit, membrane protein YPZ3_RS16940 PF04205 FMN-binding domain YPZ3_RS16945 PF03116 NQR2, RnfD, RnfE family YPZ3_RS16950 PF11973 NQRA C-terminal domain YPZ3_RS16950 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPZ3_RS16955 PF03734 L,D-transpeptidase catalytic domain YPZ3_RS16960 PF13230 Glutamine amidotransferases class-II YPZ3_RS16965 PF13580 SIS domain YPZ3_RS16970 PF09317 Domain of unknown function (DUF1974) YPZ3_RS16970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPZ3_RS16970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPZ3_RS16980 PF18071 HMW1C N-terminal YPZ3_RS16980 PF18254 HMW1 domain 2 YPZ3_RS16985 PF05860 haemagglutination activity domain YPZ3_RS16990 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_RS16990 PF08479 POTRA domain, ShlB-type YPZ3_RS16995 PF01546 Peptidase family M20/M25/M40 YPZ3_RS16995 PF07687 Peptidase dimerisation domain YPZ3_RS17000 PF00266 Aminotransferase class-V YPZ3_RS17005 PF00665 Integrase core domain YPZ3_RS17005 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS17010 PF01695 IstB-like ATP binding protein YPZ3_RS17015 PF00266 Aminotransferase class-V YPZ3_RS17020 PF00005 ABC transporter YPZ3_RS17025 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS17030 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS17035 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS17055 PF01425 Amidase YPZ3_RS17065 PF07690 Major Facilitator Superfamily YPZ3_RS17070 PF03591 AzlC protein YPZ3_RS17075 PF05437 Branched-chain amino acid transport protein (AzlD) YPZ3_RS17080 PF01047 MarR family YPZ3_RS17085 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_RS17085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS17090 PF07690 Major Facilitator Superfamily YPZ3_RS17095 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPZ3_RS17095 PF00588 SpoU rRNA Methylase family YPZ3_RS17100 PF00085 Thioredoxin YPZ3_RS17105 PF03942 DTW domain YPZ3_RS17110 PF13607 Succinyl-CoA ligase like flavodoxin domain YPZ3_RS17110 PF00583 Acetyltransferase (GNAT) family YPZ3_RS17110 PF13380 CoA binding domain YPZ3_RS17115 PF13091 PLD-like domain YPZ3_RS17120 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPZ3_RS17155 PF02861 Clp amino terminal domain, pathogenicity island component YPZ3_RS17155 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS17155 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS17155 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS17155 PF17871 AAA lid domain YPZ3_RS17160 PF02578 Multi-copper polyphenol oxidoreductase laccase YPZ3_RS17165 PF01479 S4 domain YPZ3_RS17165 PF00849 RNA pseudouridylate synthase YPZ3_RS17170 PF13525 Outer membrane lipoprotein YPZ3_RS17175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPZ3_RS17180 PF01797 Transposase IS200 like YPZ3_RS17190 PF00800 Prephenate dehydratase YPZ3_RS17190 PF01817 Chorismate mutase type II YPZ3_RS17195 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS17195 PF00665 Integrase core domain YPZ3_RS17200 PF01695 IstB-like ATP binding protein YPZ3_RS17205 PF00800 Prephenate dehydratase YPZ3_RS17205 PF01817 Chorismate mutase type II YPZ3_RS17210 PF01817 Chorismate mutase type II YPZ3_RS17210 PF02153 Prephenate dehydrogenase YPZ3_RS17215 PF00793 DAHP synthetase I family YPZ3_RS17220 PF00072 Response regulator receiver domain YPZ3_RS17220 PF04397 LytTr DNA-binding domain YPZ3_RS17225 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPZ3_RS17230 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPZ3_RS17235 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPZ3_RS17240 PF04338 Protein of unknown function, DUF481 YPZ3_RS17255 PF01245 Ribosomal protein L19 YPZ3_RS17260 PF01746 tRNA (Guanine-1)-methyltransferase YPZ3_RS17265 PF01782 RimM N-terminal domain YPZ3_RS17265 PF05239 PRC-barrel domain YPZ3_RS17270 PF00886 Ribosomal protein S16 YPZ3_RS17275 PF02978 Signal peptide binding domain YPZ3_RS17275 PF00448 SRP54-type protein, GTPase domain YPZ3_RS17275 PF02881 SRP54-type protein, helical bundle domain YPZ3_RS17280 PF01578 Cytochrome C assembly protein YPZ3_RS17285 PF03471 Transporter associated domain YPZ3_RS17285 PF00571 CBS domain YPZ3_RS17285 PF01595 Cyclin M transmembrane N-terminal domain YPZ3_RS17300 PF02664 S-Ribosylhomocysteinase (LuxS) YPZ3_RS17305 PF04262 Glutamate-cysteine ligase YPZ3_RS17310 PF09335 SNARE associated Golgi protein YPZ3_RS17315 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS17340 PF02599 Global regulator protein family YPZ3_RS17345 PF01411 tRNA synthetases class II (A) YPZ3_RS17345 PF02272 DHHA1 domain YPZ3_RS17345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPZ3_RS17350 PF02631 RecX family YPZ3_RS17355 PF00154 recA bacterial DNA recombination protein YPZ3_RS17360 PF02464 Competence-damaged protein YPZ3_RS17365 PF07690 Major Facilitator Superfamily YPZ3_RS17380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_RS17380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_RS17385 PF02780 Transketolase, C-terminal domain YPZ3_RS17385 PF02779 Transketolase, pyrimidine binding domain YPZ3_RS17390 PF00456 Transketolase, thiamine diphosphate binding domain YPZ3_RS17395 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS17400 PF00005 ABC transporter YPZ3_RS17410 PF13407 Periplasmic binding protein domain YPZ3_RS17415 PF00141 Peroxidase YPZ3_RS17420 PF07361 Cytochrome b562 YPZ3_RS17425 PF01292 Prokaryotic cytochrome b561 YPZ3_RS17430 PF02613 Nitrate reductase delta subunit YPZ3_RS17435 PF04976 DMSO reductase anchor subunit (DmsC) YPZ3_RS17440 PF13247 4Fe-4S dicluster domain YPZ3_RS17440 PF12800 4Fe-4S binding domain YPZ3_RS17445 PF01568 Molydopterin dinucleotide binding domain YPZ3_RS17445 PF00384 Molybdopterin oxidoreductase YPZ3_RS17445 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_RS17450 PF00596 Class II Aldolase and Adducin N-terminal domain YPZ3_RS17455 PF08220 DeoR-like helix-turn-helix domain YPZ3_RS17455 PF00455 DeoR C terminal sensor domain YPZ3_RS17465 PF01797 Transposase IS200 like YPZ3_RS17470 PF00005 ABC transporter YPZ3_RS17475 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS17480 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS17485 PF01261 Xylose isomerase-like TIM barrel YPZ3_RS17490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_RS17490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_RS17495 PF05683 Fumarase C-terminus YPZ3_RS17495 PF05681 Fumarate hydratase (Fumerase) YPZ3_RS17505 PF00557 Metallopeptidase family M24 YPZ3_RS17525 PF00593 TonB dependent receptor YPZ3_RS17525 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS17535 PF14376 Haem-binding domain YPZ3_RS17535 PF00034 Cytochrome c YPZ3_RS17535 PF03150 Di-haem cytochrome c peroxidase YPZ3_RS17540 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS17555 PF01022 Bacterial regulatory protein, arsR family YPZ3_RS17560 PF02040 Arsenical pump membrane protein YPZ3_RS17570 PF02734 DAK2 domain YPZ3_RS17575 PF02733 Dak1 domain YPZ3_RS17585 PF00107 Zinc-binding dehydrogenase YPZ3_RS17585 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_RS17590 PF02502 Ribose/Galactose Isomerase YPZ3_RS17600 PF05192 MutS domain III YPZ3_RS17600 PF05190 MutS family domain IV YPZ3_RS17600 PF00488 MutS domain V YPZ3_RS17600 PF01624 MutS domain I YPZ3_RS17600 PF05188 MutS domain II YPZ3_RS17605 PF04539 Sigma-70 region 3 YPZ3_RS17605 PF04545 Sigma-70, region 4 YPZ3_RS17605 PF00140 Sigma-70 factor, region 1.2 YPZ3_RS17605 PF04542 Sigma-70 region 2 YPZ3_RS17610 PF01551 Peptidase family M23 YPZ3_RS17610 PF01476 LysM domain YPZ3_RS17620 PF01975 Survival protein SurE YPZ3_RS17625 PF01142 tRNA pseudouridine synthase D (TruD) YPZ3_RS17630 PF02542 YgbB family YPZ3_RS17635 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPZ3_RS17640 PF04977 Septum formation initiator YPZ3_RS17645 PF12084 Protein of unknown function (DUF3561) YPZ3_RS17655 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS17660 PF01507 Phosphoadenosine phosphosulfate reductase family YPZ3_RS17665 PF10414 Sirohaem synthase dimerisation region YPZ3_RS17665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPZ3_RS17665 PF14824 Sirohaem biosynthesis protein central YPZ3_RS17690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPZ3_RS17690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPZ3_RS17695 PF00175 Oxidoreductase NAD-binding domain YPZ3_RS17695 PF00667 FAD binding domain YPZ3_RS17695 PF00258 Flavodoxin YPZ3_RS17700 PF01242 6-pyruvoyl tetrahydropterin synthase YPZ3_RS17705 PF04055 Radical SAM superfamily YPZ3_RS17710 PF00080 Copper/zinc superoxide dismutase (SODC) YPZ3_RS17715 PF03952 Enolase, N-terminal domain YPZ3_RS17715 PF00113 Enolase, C-terminal TIM barrel domain YPZ3_RS17720 PF00117 Glutamine amidotransferase class-I YPZ3_RS17720 PF06418 CTP synthase N-terminus YPZ3_RS17725 PF03819 MazG nucleotide pyrophosphohydrolase domain YPZ3_RS17735 PF02824 TGS domain YPZ3_RS17735 PF13291 ACT domain YPZ3_RS17735 PF04607 Region found in RelA / SpoT proteins YPZ3_RS17740 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS17740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS17740 PF01627 Hpt domain YPZ3_RS17740 PF00072 Response regulator receiver domain YPZ3_RS17740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPZ3_RS17740 PF00672 HAMP domain YPZ3_RS17745 PF00595 PDZ domain YPZ3_RS17750 PF13286 Phosphohydrolase-associated domain YPZ3_RS17750 PF01966 HD domain YPZ3_RS17755 PF01048 Phosphorylase superfamily YPZ3_RS17760 PF01497 Periplasmic binding protein YPZ3_RS17765 PF03458 UPF0126 domain YPZ3_RS17770 PF01521 Iron-sulphur cluster biosynthesis YPZ3_RS17775 PF00654 Voltage gated chloride channel YPZ3_RS17780 PF00202 Aminotransferase class-III YPZ3_RS17785 PF01032 FecCD transport family YPZ3_RS17790 PF01497 Periplasmic binding protein YPZ3_RS17800 PF00005 ABC transporter YPZ3_RS17805 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPZ3_RS17805 PF00912 Transglycosylase YPZ3_RS17805 PF00905 Penicillin binding protein transpeptidase domain YPZ3_RS17805 PF14814 Bifunctional transglycosylase second domain YPZ3_RS17810 PF08482 ATP-dependent helicase C-terminal YPZ3_RS17810 PF04408 Helicase associated domain (HA2) YPZ3_RS17810 PF00271 Helicase conserved C-terminal domain YPZ3_RS17810 PF00270 DEAD/DEAH box helicase YPZ3_RS17815 PF02834 LigT like Phosphoesterase YPZ3_RS17820 PF03749 Sugar fermentation stimulation protein RE domain YPZ3_RS17820 PF17746 SfsA N-terminal OB domain YPZ3_RS17825 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPZ3_RS17830 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPZ3_RS17835 PF01743 Poly A polymerase head domain YPZ3_RS17835 PF12626 Polymerase A arginine-rich C-terminus YPZ3_RS17835 PF12627 Probable RNA and SrmB- binding site of polymerase A YPZ3_RS17840 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPZ3_RS17845 PF02548 Ketopantoate hydroxymethyltransferase YPZ3_RS17850 PF02569 Pantoate-beta-alanine ligase YPZ3_RS17855 PF02261 Aspartate decarboxylase YPZ3_RS17865 PF01061 ABC-2 type transporter YPZ3_RS17870 PF00005 ABC transporter YPZ3_RS17875 PF00484 Carbonic anhydrase YPZ3_RS17880 PF00156 Phosphoribosyl transferase domain YPZ3_RS17885 PF07731 Multicopper oxidase YPZ3_RS17885 PF07732 Multicopper oxidase YPZ3_RS17885 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPZ3_RS17885 PF00394 Multicopper oxidase YPZ3_RS17890 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPZ3_RS17895 PF17284 Spermidine synthase tetramerisation domain YPZ3_RS17900 PF02675 S-adenosylmethionine decarboxylase YPZ3_RS17905 PF00892 EamA-like transporter family YPZ3_RS17910 PF06062 Uncharacterised protein family (UPF0231) YPZ3_RS17915 PF11791 Aconitate B N-terminal domain YPZ3_RS17915 PF00330 Aconitase family (aconitate hydratase) YPZ3_RS17915 PF06434 Aconitate hydratase 2 N-terminus YPZ3_RS17920 PF01797 Transposase IS200 like YPZ3_RS17930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_RS17930 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS17935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPZ3_RS17935 PF00364 Biotin-requiring enzyme YPZ3_RS17935 PF02817 e3 binding domain YPZ3_RS17940 PF17831 Pyruvate dehydrogenase E1 component middle domain YPZ3_RS17940 PF00456 Transketolase, thiamine diphosphate binding domain YPZ3_RS17945 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS17945 PF07729 FCD domain YPZ3_RS17950 PF00324 Amino acid permease YPZ3_RS17955 PF17113 Regulatory signalling modulator protein AmpE YPZ3_RS17960 PF01510 N-acetylmuramoyl-L-alanine amidase YPZ3_RS17965 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPZ3_RS17965 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPZ3_RS17970 PF07963 Prokaryotic N-terminal methylation motif YPZ3_RS17975 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPZ3_RS17975 PF00437 Type II/IV secretion system protein YPZ3_RS17980 PF00482 Type II secretion system (T2SS), protein F YPZ3_RS17985 PF00478 IMP dehydrogenase / GMP reductase domain YPZ3_RS17995 PF01121 Dephospho-CoA kinase YPZ3_RS18000 PF07072 Cell division protein YPZ3_RS18005 PF03884 DNA gyrase inhibitor YacG YPZ3_RS18010 PF01797 Transposase IS200 like YPZ3_RS18015 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS18015 PF00665 Integrase core domain YPZ3_RS18020 PF01695 IstB-like ATP binding protein YPZ3_RS18025 PF01119 DNA mismatch repair protein, C-terminal domain YPZ3_RS18025 PF08676 MutL C terminal dimerisation domain YPZ3_RS18035 PF13356 Arm DNA-binding domain YPZ3_RS18035 PF00589 Phage integrase family YPZ3_RS18045 PF03739 Lipopolysaccharide export system permease LptF/LptG YPZ3_RS18050 PF03739 Lipopolysaccharide export system permease LptF/LptG YPZ3_RS18055 PF02789 Cytosol aminopeptidase family, N-terminal domain YPZ3_RS18055 PF00883 Cytosol aminopeptidase family, catalytic domain YPZ3_RS18060 PF04364 DNA polymerase III chi subunit, HolC YPZ3_RS18065 PF00133 tRNA synthetases class I (I, L, M and V) YPZ3_RS18065 PF10458 Valyl tRNA synthetase tRNA binding arm YPZ3_RS18065 PF08264 Anticodon-binding domain of tRNA YPZ3_RS18070 PF00583 Acetyltransferase (GNAT) family YPZ3_RS18075 PF06877 Regulator of ribonuclease activity B YPZ3_RS18080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPZ3_RS18080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPZ3_RS18085 PF04074 YhcH/YjgK/YiaL YPZ3_RS18095 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS18100 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS18100 PF12911 N-terminal TM domain of oligopeptide transport permease C YPZ3_RS18105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_RS18105 PF00005 ABC transporter YPZ3_RS18110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPZ3_RS18110 PF00005 ABC transporter YPZ3_RS18115 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPZ3_RS18115 PF03477 ATP cone domain YPZ3_RS18125 PF00392 Bacterial regulatory proteins, gntR family YPZ3_RS18125 PF07702 UTRA domain YPZ3_RS18130 PF06754 Phosphonate metabolism protein PhnG YPZ3_RS18135 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPZ3_RS18140 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPZ3_RS18145 PF06007 Phosphonate metabolism protein PhnJ YPZ3_RS18150 PF00005 ABC transporter YPZ3_RS18155 PF00005 ABC transporter YPZ3_RS18160 PF07969 Amidohydrolase family YPZ3_RS18170 PF12706 Beta-lactamase superfamily domain YPZ3_RS18175 PF13460 NAD(P)H-binding YPZ3_RS18190 PF00005 ABC transporter YPZ3_RS18190 PF17912 MalK OB fold domain YPZ3_RS18190 PF03459 TOBE domain YPZ3_RS18195 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS18200 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS18205 PF13416 Bacterial extracellular solute-binding protein YPZ3_RS18220 PF01541 GIY-YIG catalytic domain YPZ3_RS18225 PF13508 Acetyltransferase (GNAT) domain YPZ3_RS18230 PF02036 SCP-2 sterol transfer family YPZ3_RS18240 PF01136 Peptidase family U32 YPZ3_RS18245 PF01136 Peptidase family U32 YPZ3_RS18250 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPZ3_RS18250 PF02321 Outer membrane efflux protein YPZ3_RS18255 PF00873 AcrB/AcrD/AcrF family YPZ3_RS18260 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_RS18260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPZ3_RS18265 PF00296 Luciferase-like monooxygenase YPZ3_RS18270 PF01381 Helix-turn-helix YPZ3_RS18285 PF00271 Helicase conserved C-terminal domain YPZ3_RS18285 PF00270 DEAD/DEAH box helicase YPZ3_RS18285 PF12343 Cold shock protein DEAD box A YPZ3_RS18285 PF03880 DbpA RNA binding domain YPZ3_RS18290 PF13181 Tetratricopeptide repeat YPZ3_RS18290 PF07719 Tetratricopeptide repeat YPZ3_RS18295 PF03725 3' exoribonuclease family, domain 2 YPZ3_RS18295 PF00575 S1 RNA binding domain YPZ3_RS18295 PF00013 KH domain YPZ3_RS18295 PF01138 3' exoribonuclease family, domain 1 YPZ3_RS18295 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPZ3_RS18300 PF13333 Integrase core domain YPZ3_RS18300 PF00665 Integrase core domain YPZ3_RS18300 PF13276 HTH-like domain YPZ3_RS18310 PF05947 Type VI secretion system, TssF YPZ3_RS18330 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPZ3_RS18340 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS18340 PF10431 C-terminal, D2-small domain, of ClpB protein YPZ3_RS18340 PF17871 AAA lid domain YPZ3_RS18340 PF07724 AAA domain (Cdc48 subfamily) YPZ3_RS18375 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_RS18390 PF03527 RHS protein YPZ3_RS18390 PF05593 RHS Repeat YPZ3_RS18420 PF04717 Type VI secretion system, phage-baseplate injector YPZ3_RS18430 PF05593 RHS Repeat YPZ3_RS18430 PF03527 RHS protein YPZ3_RS18445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPZ3_RS18445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPZ3_RS18450 PF02311 AraC-like ligand binding domain YPZ3_RS18450 PF12833 Helix-turn-helix domain YPZ3_RS18455 PF05025 RbsD / FucU transport protein family YPZ3_RS18460 PF00294 pfkB family carbohydrate kinase YPZ3_RS18465 PF01791 DeoC/LacD family aldolase YPZ3_RS18470 PF03358 NADPH-dependent FMN reductase YPZ3_RS18475 PF09084 NMT1/THI5 like YPZ3_RS18480 PF00296 Luciferase-like monooxygenase YPZ3_RS18485 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS18490 PF00005 ABC transporter YPZ3_RS18495 PF04221 RelB antitoxin YPZ3_RS18500 PF00860 Permease family YPZ3_RS18505 PF00999 Sodium/hydrogen exchanger family YPZ3_RS18515 PF03279 Bacterial lipid A biosynthesis acyltransferase YPZ3_RS18525 PF00005 ABC transporter YPZ3_RS18530 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS18540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPZ3_RS18540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPZ3_RS18545 PF00571 CBS domain YPZ3_RS18545 PF01380 SIS domain YPZ3_RS18550 PF02798 Glutathione S-transferase, N-terminal domain YPZ3_RS18575 PF00313 'Cold-shock' DNA-binding domain YPZ3_RS18580 PF00313 'Cold-shock' DNA-binding domain YPZ3_RS18590 PF05433 Glycine zipper 2TM domain YPZ3_RS18595 PF00753 Metallo-beta-lactamase superfamily YPZ3_RS18600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPZ3_RS18600 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPZ3_RS18605 PF02627 Carboxymuconolactone decarboxylase family YPZ3_RS18610 PF07690 Major Facilitator Superfamily YPZ3_RS18625 PF02954 Bacterial regulatory protein, Fis family YPZ3_RS18630 PF01207 Dihydrouridine synthase (Dus) YPZ3_RS18640 PF00474 Sodium:solute symporter family YPZ3_RS18645 PF06196 Protein of unknown function (DUF997) YPZ3_RS18650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPZ3_RS18650 PF00289 Biotin carboxylase, N-terminal domain YPZ3_RS18650 PF02785 Biotin carboxylase C-terminal domain YPZ3_RS18655 PF00364 Biotin-requiring enzyme YPZ3_RS18660 PF01220 Dehydroquinase class II YPZ3_RS18665 PF01794 Ferric reductase like transmembrane component YPZ3_RS18670 PF00174 Oxidoreductase molybdopterin binding domain YPZ3_RS18675 PF00107 Zinc-binding dehydrogenase YPZ3_RS18675 PF08240 Alcohol dehydrogenase GroES-like domain YPZ3_RS18680 PF17157 Gammaproteobacterial periplasmic sensor domain YPZ3_RS18680 PF00990 Diguanylate cyclase, GGDEF domain YPZ3_RS18680 PF00563 EAL domain YPZ3_RS18690 PF04085 rod shape-determining protein MreC YPZ3_RS18695 PF04093 rod shape-determining protein MreD YPZ3_RS18700 PF02545 Maf-like protein YPZ3_RS18705 PF10150 Ribonuclease E/G family YPZ3_RS18705 PF00575 S1 RNA binding domain YPZ3_RS18710 PF13116 Protein of unknown function YPZ3_RS18710 PF13502 AsmA-like C-terminal region YPZ3_RS18715 PF00795 Carbon-nitrogen hydrolase YPZ3_RS18720 PF01523 Putative modulator of DNA gyrase YPZ3_RS18725 PF14431 YwqJ-like deaminase YPZ3_RS18725 PF18807 Tripartite Tc toxins repeat YPZ3_RS18730 PF18807 Tripartite Tc toxins repeat YPZ3_RS18730 PF05785 Rho-activating domain of cytotoxic necrotizing factor YPZ3_RS18755 PF12255 Insecticide toxin TcdB middle/C-terminal region YPZ3_RS18755 PF03534 Salmonella virulence plasmid 65kDa B protein YPZ3_RS18755 PF12256 Insecticide toxin TcdB middle/N-terminal region YPZ3_RS18760 PF18413 Neuraminidase-like domain YPZ3_RS18760 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPZ3_RS18775 PF03466 LysR substrate binding domain YPZ3_RS18775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS18780 PF03466 LysR substrate binding domain YPZ3_RS18780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS18785 PF07869 Protein of unknown function (DUF1656) YPZ3_RS18790 PF13533 Biotin-lipoyl like YPZ3_RS18795 PF04632 Fusaric acid resistance protein family YPZ3_RS18800 PF00171 Aldehyde dehydrogenase family YPZ3_RS18805 PF00171 Aldehyde dehydrogenase family YPZ3_RS18815 PF01337 Barstar (barnase inhibitor) YPZ3_RS18820 PF04751 Protein of unknown function (DUF615) YPZ3_RS18825 PF01523 Putative modulator of DNA gyrase YPZ3_RS18835 PF07361 Cytochrome b562 YPZ3_RS18840 PF14760 Rnk N-terminus YPZ3_RS18840 PF01272 Transcription elongation factor, GreA/GreB, C-term YPZ3_RS18845 PF00128 Alpha amylase, catalytic domain YPZ3_RS18845 PF11941 Domain of unknown function (DUF3459) YPZ3_RS18850 PF00367 phosphotransferase system, EIIB YPZ3_RS18850 PF02378 Phosphotransferase system, EIIC YPZ3_RS18855 PF00356 Bacterial regulatory proteins, lacI family YPZ3_RS18865 PF01042 Endoribonuclease L-PSP YPZ3_RS18870 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPZ3_RS18870 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPZ3_RS18875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPZ3_RS18875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPZ3_RS18880 PF00381 PTS HPr component phosphorylation site YPZ3_RS18885 PF03668 P-loop ATPase protein family YPZ3_RS18890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_RS18900 PF04963 Sigma-54 factor, core binding domain YPZ3_RS18900 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPZ3_RS18900 PF04552 Sigma-54, DNA binding domain YPZ3_RS18905 PF00005 ABC transporter YPZ3_RS18905 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPZ3_RS18910 PF03968 OstA-like protein YPZ3_RS18915 PF06835 Lipopolysaccharide-assembly, LptC-related YPZ3_RS18925 PF01380 SIS domain YPZ3_RS18925 PF00571 CBS domain YPZ3_RS18930 PF01699 Sodium/calcium exchanger protein YPZ3_RS18935 PF00005 ABC transporter YPZ3_RS18940 PF02405 Permease MlaE YPZ3_RS18945 PF02470 MlaD protein YPZ3_RS18950 PF05494 MlaC protein YPZ3_RS18955 PF13466 STAS domain YPZ3_RS18960 PF01722 BolA-like protein YPZ3_RS18965 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPZ3_RS18970 PF13180 PDZ domain YPZ3_RS18975 PF01797 Transposase IS200 like YPZ3_RS18980 PF13180 PDZ domain YPZ3_RS18980 PF00595 PDZ domain YPZ3_RS18985 PF06295 Protein of unknown function (DUF1043) YPZ3_RS18990 PF03969 AFG1-like ATPase YPZ3_RS18995 PF00572 Ribosomal protein L13 YPZ3_RS19000 PF00380 Ribosomal protein S9/S16 YPZ3_RS19010 PF02798 Glutathione S-transferase, N-terminal domain YPZ3_RS19010 PF00043 Glutathione S-transferase, C-terminal domain YPZ3_RS19015 PF04386 Stringent starvation protein B YPZ3_RS19025 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS19025 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPZ3_RS19030 PF01645 Conserved region in glutamate synthase YPZ3_RS19030 PF00310 Glutamine amidotransferases class-II YPZ3_RS19030 PF01493 GXGXG motif YPZ3_RS19030 PF04898 Glutamate synthase central domain YPZ3_RS19035 PF16199 Radical_SAM C-terminal domain YPZ3_RS19035 PF04055 Radical SAM superfamily YPZ3_RS19045 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPZ3_RS19045 PF00989 PAS fold YPZ3_RS19045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS19045 PF00072 Response regulator receiver domain YPZ3_RS19045 PF01627 Hpt domain YPZ3_RS19045 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS19060 PF00912 Transglycosylase YPZ3_RS19065 PF04972 BON domain YPZ3_RS19070 PF13580 SIS domain YPZ3_RS19075 PF02021 Uncharacterised protein family UPF0102 YPZ3_RS19080 PF04348 LppC putative lipoprotein YPZ3_RS19085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPZ3_RS19090 PF02678 Pirin YPZ3_RS19090 PF17954 Quercetinase C-terminal cupin domain YPZ3_RS19095 PF03466 LysR substrate binding domain YPZ3_RS19095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS19100 PF13409 Glutathione S-transferase, N-terminal domain YPZ3_RS19105 PF01695 IstB-like ATP binding protein YPZ3_RS19110 PF00665 Integrase core domain YPZ3_RS19110 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS19115 PF00326 Prolyl oligopeptidase family YPZ3_RS19125 PF01250 Ribosomal protein S6 YPZ3_RS19130 PF00436 Single-strand binding protein family YPZ3_RS19135 PF01084 Ribosomal protein S18 YPZ3_RS19140 PF01281 Ribosomal protein L9, N-terminal domain YPZ3_RS19140 PF03948 Ribosomal protein L9, C-terminal domain YPZ3_RS19150 PF01797 Transposase IS200 like YPZ3_RS19160 PF08525 Opacity-associated protein A N-terminal motif YPZ3_RS19160 PF04225 Opacity-associated protein A LysM-like domain YPZ3_RS19165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPZ3_RS19165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPZ3_RS19170 PF04405 Domain of Unknown function (DUF542) YPZ3_RS19170 PF01814 Hemerythrin HHE cation binding domain YPZ3_RS19175 PF02872 5'-nucleotidase, C-terminal domain YPZ3_RS19175 PF00149 Calcineurin-like phosphoesterase YPZ3_RS19180 PF00459 Inositol monophosphatase family YPZ3_RS19185 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPZ3_RS19190 PF06526 Protein of unknown function (DUF1107) YPZ3_RS19195 PF03471 Transporter associated domain YPZ3_RS19195 PF01595 Cyclin M transmembrane N-terminal domain YPZ3_RS19195 PF00571 CBS domain YPZ3_RS19200 PF01625 Peptide methionine sulfoxide reductase YPZ3_RS19205 PF17243 POTRA domain TamA domain 1 YPZ3_RS19205 PF07244 Surface antigen variable number repeat YPZ3_RS19205 PF01103 Surface antigen YPZ3_RS19210 PF04357 TamB, inner membrane protein subunit of TAM complex YPZ3_RS19215 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPZ3_RS19220 PF00719 Inorganic pyrophosphatase YPZ3_RS19225 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPZ3_RS19230 PF08245 Mur ligase middle domain YPZ3_RS19230 PF01225 Mur ligase family, catalytic domain YPZ3_RS19230 PF02875 Mur ligase family, glutamate ligase domain YPZ3_RS19245 PF02863 Arginine repressor, C-terminal domain YPZ3_RS19245 PF01316 Arginine repressor, DNA binding domain YPZ3_RS19250 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPZ3_RS19250 PF00056 lactate/malate dehydrogenase, NAD binding domain YPZ3_RS19255 PF13693 Winged helix-turn-helix DNA-binding YPZ3_RS19265 PF00348 Polyprenyl synthetase YPZ3_RS19270 PF00829 Ribosomal prokaryotic L21 protein YPZ3_RS19275 PF01016 Ribosomal L27 protein YPZ3_RS19280 PF00892 EamA-like transporter family YPZ3_RS19285 PF01018 GTP1/OBG YPZ3_RS19285 PF01926 50S ribosome-binding GTPase YPZ3_RS19290 PF00672 HAMP domain YPZ3_RS19290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS19290 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS19295 PF00486 Transcriptional regulatory protein, C terminal YPZ3_RS19295 PF00072 Response regulator receiver domain YPZ3_RS19300 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPZ3_RS19310 PF01985 CRS1 / YhbY (CRM) domain YPZ3_RS19315 PF01728 FtsJ-like methyltransferase YPZ3_RS19320 PF17862 AAA+ lid domain YPZ3_RS19320 PF00004 ATPase family associated with various cellular activities (AAA) YPZ3_RS19320 PF06480 FtsH Extracellular YPZ3_RS19320 PF01434 Peptidase family M41 YPZ3_RS19325 PF00809 Pterin binding enzyme YPZ3_RS19330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPZ3_RS19330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPZ3_RS19330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPZ3_RS19330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPZ3_RS19335 PF03840 Preprotein translocase SecG subunit YPZ3_RS19350 PF02576 RimP N-terminal domain YPZ3_RS19350 PF17384 RimP C-terminal SH3 domain YPZ3_RS19355 PF08529 NusA N-terminal domain YPZ3_RS19355 PF00575 S1 RNA binding domain YPZ3_RS19355 PF13184 NusA-like KH domain YPZ3_RS19360 PF04760 Translation initiation factor IF-2, N-terminal region YPZ3_RS19360 PF11987 Translation-initiation factor 2 YPZ3_RS19360 PF08364 Bacterial translation initiation factor IF-2 associated region YPZ3_RS19360 PF03144 Elongation factor Tu domain 2 YPZ3_RS19360 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS19365 PF02033 Ribosome-binding factor A YPZ3_RS19370 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPZ3_RS19370 PF09157 Pseudouridine synthase II TruB, C-terminal YPZ3_RS19370 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPZ3_RS19375 PF00312 Ribosomal protein S15 YPZ3_RS19385 PF13276 HTH-like domain YPZ3_RS19385 PF00665 Integrase core domain YPZ3_RS19385 PF13333 Integrase core domain YPZ3_RS19390 PF05947 Type VI secretion system, TssF YPZ3_RS19400 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPZ3_RS19410 PF05638 Type VI secretion system effector, Hcp YPZ3_RS19420 PF07148 Maltose operon periplasmic protein precursor (MalM) YPZ3_RS19425 PF02264 LamB porin YPZ3_RS19430 PF00005 ABC transporter YPZ3_RS19430 PF17912 MalK OB fold domain YPZ3_RS19440 PF01547 Bacterial extracellular solute-binding protein YPZ3_RS19445 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS19445 PF14785 Maltose transport system permease protein MalF P2 domain YPZ3_RS19450 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS19455 PF06146 Phosphate-starvation-inducible E YPZ3_RS19460 PF00342 Phosphoglucose isomerase YPZ3_RS19465 PF00696 Amino acid kinase family YPZ3_RS19465 PF01842 ACT domain YPZ3_RS19475 PF08479 POTRA domain, ShlB-type YPZ3_RS19475 PF17287 POTRA domain YPZ3_RS19475 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPZ3_RS19480 PF05860 haemagglutination activity domain YPZ3_RS19480 PF13332 Hemagglutinin repeat YPZ3_RS19485 PF02574 Homocysteine S-methyltransferase YPZ3_RS19485 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPZ3_RS19485 PF00809 Pterin binding enzyme YPZ3_RS19485 PF02310 B12 binding domain YPZ3_RS19485 PF02607 B12 binding domain YPZ3_RS19490 PF01614 Bacterial transcriptional regulator YPZ3_RS19490 PF09339 IclR helix-turn-helix domain YPZ3_RS19495 PF09339 IclR helix-turn-helix domain YPZ3_RS19495 PF01614 Bacterial transcriptional regulator YPZ3_RS19500 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPZ3_RS19505 PF00463 Isocitrate lyase family YPZ3_RS19510 PF01274 Malate synthase YPZ3_RS19515 PF04204 Homoserine O-succinyltransferase YPZ3_RS19565 PF02142 MGS-like domain YPZ3_RS19565 PF01808 AICARFT/IMPCHase bienzyme YPZ3_RS19570 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPZ3_RS19570 PF02843 Phosphoribosylglycinamide synthetase, C domain YPZ3_RS19570 PF02844 Phosphoribosylglycinamide synthetase, N domain YPZ3_RS19575 PF07356 Protein of unknown function (DUF1481) YPZ3_RS19580 PF00216 Bacterial DNA-binding protein YPZ3_RS19585 PF04222 Protein of unknown function (DUF416) YPZ3_RS19595 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPZ3_RS19605 PF09297 NADH pyrophosphatase zinc ribbon domain YPZ3_RS19605 PF00293 NUDIX domain YPZ3_RS19610 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPZ3_RS19620 PF01964 Radical SAM ThiC family YPZ3_RS19620 PF13667 ThiC-associated domain YPZ3_RS19625 PF02581 Thiamine monophosphate synthase YPZ3_RS19630 PF00899 ThiF family YPZ3_RS19640 PF05690 Thiazole biosynthesis protein ThiG YPZ3_RS19645 PF06968 Biotin and Thiamin Synthesis associated domain YPZ3_RS19645 PF04055 Radical SAM superfamily YPZ3_RS19660 PF01797 Transposase IS200 like YPZ3_RS19665 PF04997 RNA polymerase Rpb1, domain 1 YPZ3_RS19665 PF00623 RNA polymerase Rpb1, domain 2 YPZ3_RS19665 PF04998 RNA polymerase Rpb1, domain 5 YPZ3_RS19665 PF04983 RNA polymerase Rpb1, domain 3 YPZ3_RS19665 PF05000 RNA polymerase Rpb1, domain 4 YPZ3_RS19670 PF04563 RNA polymerase beta subunit YPZ3_RS19670 PF04560 RNA polymerase Rpb2, domain 7 YPZ3_RS19670 PF00562 RNA polymerase Rpb2, domain 6 YPZ3_RS19670 PF10385 RNA polymerase beta subunit external 1 domain YPZ3_RS19670 PF04561 RNA polymerase Rpb2, domain 2 YPZ3_RS19670 PF04565 RNA polymerase Rpb2, domain 3 YPZ3_RS19675 PF16320 Ribosomal protein L7/L12 dimerisation domain YPZ3_RS19675 PF00542 Ribosomal protein L7/L12 C-terminal domain YPZ3_RS19680 PF00466 Ribosomal protein L10 YPZ3_RS19685 PF00687 Ribosomal protein L1p/L10e family YPZ3_RS19690 PF00298 Ribosomal protein L11, RNA binding domain YPZ3_RS19690 PF03946 Ribosomal protein L11, N-terminal domain YPZ3_RS19695 PF00467 KOW motif YPZ3_RS19695 PF02357 Transcription termination factor nusG YPZ3_RS19700 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPZ3_RS19705 PF03144 Elongation factor Tu domain 2 YPZ3_RS19705 PF03143 Elongation factor Tu C-terminal domain YPZ3_RS19705 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS19730 PF01695 IstB-like ATP binding protein YPZ3_RS19735 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS19735 PF00665 Integrase core domain YPZ3_RS19740 PF13673 Acetyltransferase (GNAT) domain YPZ3_RS19745 PF00485 Phosphoribulokinase / Uridine kinase family YPZ3_RS19750 PF02237 Biotin protein ligase C terminal domain YPZ3_RS19750 PF08279 HTH domain YPZ3_RS19750 PF03099 Biotin/lipoate A/B protein ligase family YPZ3_RS19755 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPZ3_RS19755 PF01565 FAD binding domain YPZ3_RS19790 PF12724 Flavodoxin domain YPZ3_RS19795 PF02386 Cation transport protein YPZ3_RS19800 PF09186 Domain of unknown function (DUF1949) YPZ3_RS19800 PF01205 Uncharacterized protein family UPF0029 YPZ3_RS19810 PF09186 Domain of unknown function (DUF1949) YPZ3_RS19810 PF01205 Uncharacterized protein family UPF0029 YPZ3_RS19815 PF00557 Metallopeptidase family M24 YPZ3_RS19820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPZ3_RS19820 PF00378 Enoyl-CoA hydratase/isomerase YPZ3_RS19820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPZ3_RS19825 PF02803 Thiolase, C-terminal domain YPZ3_RS19825 PF00108 Thiolase, N-terminal domain YPZ3_RS19830 PF00970 Oxidoreductase FAD-binding domain YPZ3_RS19830 PF00175 Oxidoreductase NAD-binding domain YPZ3_RS19835 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPZ3_RS19840 PF02357 Transcription termination factor nusG YPZ3_RS19845 PF00490 Delta-aminolevulinic acid dehydratase YPZ3_RS19850 PF01026 TatD related DNase YPZ3_RS19855 PF01695 IstB-like ATP binding protein YPZ3_RS19860 PF02796 Helix-turn-helix domain of resolvase YPZ3_RS19860 PF00665 Integrase core domain YPZ3_RS19865 PF01026 TatD related DNase YPZ3_RS19870 PF00902 Sec-independent protein translocase protein (TatC) YPZ3_RS19880 PF02416 mttA/Hcf106 family YPZ3_RS19885 PF03109 ABC1 family YPZ3_RS19890 PF02036 SCP-2 sterol transfer family YPZ3_RS19895 PF01209 ubiE/COQ5 methyltransferase family YPZ3_RS19900 PF02646 RmuC family YPZ3_RS19905 PF09335 SNARE associated Golgi protein YPZ3_RS19910 PF02554 Carbon starvation protein CstA YPZ3_RS19910 PF13722 5TM C-terminal transporter carbon starvation CstA YPZ3_RS19920 PF01048 Phosphorylase superfamily YPZ3_RS19925 PF01738 Dienelactone hydrolase family YPZ3_RS19930 PF08267 Cobalamin-independent synthase, N-terminal domain YPZ3_RS19930 PF01717 Cobalamin-independent synthase, Catalytic domain YPZ3_RS19935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS19935 PF03466 LysR substrate binding domain YPZ3_RS19940 PF00892 EamA-like transporter family YPZ3_RS19945 PF03547 Membrane transport protein YPZ3_RS19950 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_RS19955 PF17912 MalK OB fold domain YPZ3_RS19955 PF00005 ABC transporter YPZ3_RS19960 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS19965 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS19970 PF13416 Bacterial extracellular solute-binding protein YPZ3_RS20010 PF00005 ABC transporter YPZ3_RS20015 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPZ3_RS20015 PF00005 ABC transporter YPZ3_RS20020 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS20020 PF11862 Domain of unknown function (DUF3382) YPZ3_RS20025 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS20030 PF13458 Periplasmic binding protein YPZ3_RS20035 PF12568 Acetyltransferase (GNAT) domain, PanZ YPZ3_RS20040 PF01797 Transposase IS200 like YPZ3_RS20050 PF04542 Sigma-70 region 2 YPZ3_RS20050 PF04545 Sigma-70, region 4 YPZ3_RS20050 PF00140 Sigma-70 factor, region 1.2 YPZ3_RS20055 PF02687 FtsX-like permease family YPZ3_RS20055 PF18075 FtsX extracellular domain YPZ3_RS20060 PF00005 ABC transporter YPZ3_RS20065 PF00448 SRP54-type protein, GTPase domain YPZ3_RS20065 PF02881 SRP54-type protein, helical bundle domain YPZ3_RS20065 PF00448 SRP54-type protein, GTPase domain YPZ3_RS20065 PF02881 SRP54-type protein, helical bundle domain YPZ3_RS20080 PF06611 Protein of unknown function (DUF1145) YPZ3_RS20095 PF07947 YhhN family YPZ3_RS20100 PF00403 Heavy-metal-associated domain YPZ3_RS20105 PF01206 Sulfurtransferase TusA YPZ3_RS20110 PF02592 Putative vitamin uptake transporter YPZ3_RS20115 PF08786 DcrB YPZ3_RS20120 PF13183 4Fe-4S dicluster domain YPZ3_RS20120 PF02754 Cysteine-rich domain YPZ3_RS20125 PF00890 FAD binding domain YPZ3_RS20130 PF01266 FAD dependent oxidoreductase YPZ3_RS20130 PF04324 BFD-like [2Fe-2S] binding domain YPZ3_RS20140 PF03009 Glycerophosphoryl diester phosphodiesterase family YPZ3_RS20155 PF12146 Serine aminopeptidase, S33 YPZ3_RS20160 PF01810 LysE type translocator YPZ3_RS20165 PF01810 LysE type translocator YPZ3_RS20170 PF00270 DEAD/DEAH box helicase YPZ3_RS20170 PF00271 Helicase conserved C-terminal domain YPZ3_RS20170 PF00570 HRDC domain YPZ3_RS20170 PF16124 RecQ zinc-binding YPZ3_RS20170 PF09382 RQC domain YPZ3_RS20175 PF02253 Phospholipase A1 YPZ3_RS20180 PF03061 Thioesterase superfamily YPZ3_RS20185 PF00892 EamA-like transporter family YPZ3_RS20190 PF01544 CorA-like Mg2+ transporter protein YPZ3_RS20195 PF09370 Phosphoenolpyruvate hydrolase-like YPZ3_RS20210 PF13361 UvrD-like helicase C-terminal domain YPZ3_RS20210 PF00580 UvrD/REP helicase N-terminal domain YPZ3_RS20215 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS20220 PF02899 Phage integrase, N-terminal SAM-like domain YPZ3_RS20220 PF00589 Phage integrase family YPZ3_RS20225 PF04340 Protein of unknown function, DUF484 YPZ3_RS20230 PF01678 Diaminopimelate epimerase YPZ3_RS20235 PF13627 Prokaryotic lipoprotein-attachment site YPZ3_RS20240 PF01491 Frataxin-like domain YPZ3_RS20245 PF12633 Adenylate cyclase NT domain YPZ3_RS20245 PF01295 Adenylate cyclase, class-I YPZ3_RS20250 PF03900 Porphobilinogen deaminase, C-terminal domain YPZ3_RS20250 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPZ3_RS20255 PF02602 Uroporphyrinogen-III synthase HemD YPZ3_RS20260 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPZ3_RS20265 PF07719 Tetratricopeptide repeat YPZ3_RS20265 PF07219 HemY protein N-terminus YPZ3_RS20295 PF00324 Amino acid permease YPZ3_RS20300 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPZ3_RS20305 PF06899 WzyE protein, O-antigen assembly polymerase YPZ3_RS20310 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPZ3_RS20315 PF01943 Polysaccharide biosynthesis protein YPZ3_RS20320 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPZ3_RS20330 PF00483 Nucleotidyl transferase YPZ3_RS20335 PF16363 GDP-mannose 4,6 dehydratase YPZ3_RS20340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPZ3_RS20340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPZ3_RS20340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPZ3_RS20345 PF02350 UDP-N-acetylglucosamine 2-epimerase YPZ3_RS20350 PF02706 Chain length determinant protein YPZ3_RS20355 PF00953 Glycosyl transferase family 4 YPZ3_RS20360 PF07497 Rho termination factor, RNA-binding domain YPZ3_RS20360 PF07498 Rho termination factor, N-terminal domain YPZ3_RS20360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_RS20365 PF00085 Thioredoxin YPZ3_RS20370 PF00270 DEAD/DEAH box helicase YPZ3_RS20370 PF00271 Helicase conserved C-terminal domain YPZ3_RS20375 PF02541 Ppx/GppA phosphatase family YPZ3_RS20380 PF02541 Ppx/GppA phosphatase family YPZ3_RS20385 PF13361 UvrD-like helicase C-terminal domain YPZ3_RS20385 PF00580 UvrD/REP helicase N-terminal domain YPZ3_RS20405 PF00872 Transposase, Mutator family YPZ3_RS20420 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_RS20420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS20425 PF13954 PapC N-terminal domain YPZ3_RS20425 PF13953 PapC C-terminal domain YPZ3_RS20425 PF00577 Outer membrane usher protein YPZ3_RS20435 PF02753 Pili assembly chaperone PapD, C-terminal domain YPZ3_RS20435 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPZ3_RS20445 PF01320 Colicin immunity protein / pyocin immunity protein YPZ3_RS20470 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPZ3_RS20470 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPZ3_RS20475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS20475 PF03466 LysR substrate binding domain YPZ3_RS20505 PF00585 C-terminal regulatory domain of Threonine dehydratase YPZ3_RS20505 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_RS20510 PF00920 Dehydratase family YPZ3_RS20515 PF01063 Amino-transferase class IV YPZ3_RS20525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPZ3_RS20525 PF00205 Thiamine pyrophosphate enzyme, central domain YPZ3_RS20525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPZ3_RS20530 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPZ3_RS20530 PF01078 Magnesium chelatase, subunit ChlI YPZ3_RS20535 PF04219 Protein of unknown function, DUF YPZ3_RS20540 PF03466 LysR substrate binding domain YPZ3_RS20540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS20545 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS20550 PF02653 Branched-chain amino acid transport system / permease component YPZ3_RS20555 PF00005 ABC transporter YPZ3_RS20560 PF13407 Periplasmic binding protein domain YPZ3_RS20600 PF01177 Asp/Glu/Hydantoin racemase YPZ3_RS20605 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS20605 PF00593 TonB dependent receptor YPZ3_RS20615 PF05958 tRNA (Uracil-5-)-methyltransferase YPZ3_RS20620 PF07226 Protein of unknown function (DUF1422) YPZ3_RS20625 PF00440 Bacterial regulatory proteins, tetR family YPZ3_RS20630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_RS20630 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS20635 PF03466 LysR substrate binding domain YPZ3_RS20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPZ3_RS20640 PF08534 Redoxin YPZ3_RS20640 PF00462 Glutaredoxin YPZ3_RS20645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPZ3_RS20645 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPZ3_RS20650 PF03544 Gram-negative bacterial TonB protein C-terminal YPZ3_RS20655 PF00529 HlyD membrane-fusion protein of T1SS YPZ3_RS20660 PF00005 ABC transporter YPZ3_RS20660 PF00664 ABC transporter transmembrane region YPZ3_RS20670 PF00593 TonB dependent receptor YPZ3_RS20670 PF07715 TonB-dependent Receptor Plug Domain YPZ3_RS20680 PF00206 Lyase YPZ3_RS20680 PF14698 Argininosuccinate lyase C-terminal YPZ3_RS20685 PF00696 Amino acid kinase family YPZ3_RS20690 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPZ3_RS20690 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPZ3_RS20695 PF01546 Peptidase family M20/M25/M40 YPZ3_RS20695 PF07687 Peptidase dimerisation domain YPZ3_RS20700 PF00311 Phosphoenolpyruvate carboxylase YPZ3_RS20710 PF13333 Integrase core domain YPZ3_RS20710 PF00665 Integrase core domain YPZ3_RS20710 PF13276 HTH-like domain YPZ3_RS20715 PF07690 Major Facilitator Superfamily YPZ3_RS20740 PF13700 Domain of unknown function (DUF4158) YPZ3_RS20740 PF01526 Tn3 transposase DDE domain YPZ3_RS20745 PF09107 Elongation factor SelB, winged helix YPZ3_RS20745 PF09106 Elongation factor SelB, winged helix YPZ3_RS20745 PF03144 Elongation factor Tu domain 2 YPZ3_RS20745 PF00009 Elongation factor Tu GTP binding domain YPZ3_RS20750 PF03841 L-seryl-tRNA selenium transferase YPZ3_RS20750 PF12390 Selenocysteine synthase N terminal YPZ3_RS20755 PF04216 Protein involved in formate dehydrogenase formation YPZ3_RS20760 PF01292 Prokaryotic cytochrome b561 YPZ3_RS20765 PF09163 Formate dehydrogenase N, transmembrane YPZ3_RS20765 PF13247 4Fe-4S dicluster domain YPZ3_RS20770 PF01568 Molydopterin dinucleotide binding domain YPZ3_RS20770 PF00384 Molybdopterin oxidoreductase YPZ3_RS20770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_RS20775 PF01568 Molydopterin dinucleotide binding domain YPZ3_RS20775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPZ3_RS20775 PF00384 Molybdopterin oxidoreductase YPZ3_RS20780 PF02634 FdhD/NarQ family YPZ3_RS20785 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPZ3_RS20785 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPZ3_RS20790 PF02203 Tar ligand binding domain homologue YPZ3_RS20790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPZ3_RS20790 PF00672 HAMP domain YPZ3_RS20805 PF10928 Protein of unknown function (DUF2810) YPZ3_RS20810 PF05068 Mannitol repressor YPZ3_RS20815 PF01232 Mannitol dehydrogenase Rossmann domain YPZ3_RS20815 PF08125 Mannitol dehydrogenase C-terminal domain YPZ3_RS20820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPZ3_RS20820 PF02378 Phosphotransferase system, EIIC YPZ3_RS20820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPZ3_RS20825 PF11254 Protein of unknown function (DUF3053) YPZ3_RS20830 PF02092 Glycyl-tRNA synthetase beta subunit YPZ3_RS20830 PF05746 DALR anticodon binding domain YPZ3_RS20835 PF02091 Glycyl-tRNA synthetase alpha subunit YPZ3_RS20840 PF03352 Methyladenine glycosylase YPZ3_RS20850 PF13488 Glycine zipper YPZ3_RS20850 PF00691 OmpA family YPZ3_RS20860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPZ3_RS20860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPZ3_RS20865 PF00128 Alpha amylase, catalytic domain YPZ3_RS20875 PF00155 Aminotransferase class I and II YPZ3_RS20880 PF06826 Predicted Permease Membrane Region YPZ3_RS20880 PF02080 TrkA-C domain YPZ3_RS20885 PF00011 Hsp20/alpha crystallin family YPZ3_RS20890 PF00011 Hsp20/alpha crystallin family YPZ3_RS20895 PF07119 Protein of unknown function (DUF1375) YPZ3_RS20900 PF07676 WD40-like Beta Propeller Repeat YPZ3_RS20900 PF12566 Protein of unknown function (DUF3748) YPZ3_RS20905 PF12566 Protein of unknown function (DUF3748) YPZ3_RS20905 PF07676 WD40-like Beta Propeller Repeat YPZ3_RS20910 PF13291 ACT domain YPZ3_RS20910 PF00291 Pyridoxal-phosphate dependent enzyme YPZ3_RS20915 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPZ3_RS20925 PF00665 Integrase core domain YPZ3_RS20925 PF13276 HTH-like domain YPZ3_RS20925 PF13333 Integrase core domain YPZ3_RS20935 PF00204 DNA gyrase B YPZ3_RS20935 PF18053 DNA gyrase B subunit insert domain YPZ3_RS20935 PF01751 Toprim domain YPZ3_RS20935 PF00986 DNA gyrase B subunit, carboxyl terminus YPZ3_RS20935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS20940 PF02463 RecF/RecN/SMC N terminal domain YPZ3_RS20950 PF02768 DNA polymerase III beta subunit, C-terminal domain YPZ3_RS20950 PF00712 DNA polymerase III beta subunit, N-terminal domain YPZ3_RS20950 PF02767 DNA polymerase III beta subunit, central domain YPZ3_RS20955 PF00308 Bacterial dnaA protein YPZ3_RS20955 PF08299 Bacterial dnaA protein helix-turn-helix YPZ3_RS20955 PF11638 DnaA N-terminal domain YPZ3_RS20960 PF00468 Ribosomal protein L34 YPZ3_RS20965 PF00825 Ribonuclease P YPZ3_RS20970 PF14849 YidC periplasmic domain YPZ3_RS20970 PF02096 60Kd inner membrane protein YPZ3_RS20975 PF01926 50S ribosome-binding GTPase YPZ3_RS20975 PF10396 GTP-binding protein TrmE N-terminus YPZ3_RS20975 PF12631 MnmE helical domain YPZ3_RS20980 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPZ3_RS20980 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPZ3_RS20980 PF07055 Enoyl reductase FAD binding domain YPZ3_RS20995 PF00860 Permease family YPZ3_RS21000 PF13419 Haloacid dehalogenase-like hydrolase YPZ3_RS21005 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS21010 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS21015 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPZ3_RS21025 PF01895 PhoU domain YPZ3_RS21030 PF00005 ABC transporter YPZ3_RS21035 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS21040 PF00528 Binding-protein-dependent transport system inner membrane component YPZ3_RS21045 PF12849 PBP superfamily domain YPZ3_RS21050 PF01380 SIS domain YPZ3_RS21055 PF12804 MobA-like NTP transferase domain YPZ3_RS21055 PF00132 Bacterial transferase hexapeptide (six repeats) YPZ3_RS21060 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPZ3_RS21060 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPZ3_RS21065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_RS21065 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPZ3_RS21070 PF00231 ATP synthase YPZ3_RS21075 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPZ3_RS21075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPZ3_RS21075 PF00306 ATP synthase alpha/beta chain, C terminal domain YPZ3_RS21080 PF00213 ATP synthase delta (OSCP) subunit YPZ3_RS21085 PF00430 ATP synthase B/B' CF(0) YPZ3_RS21090 PF00137 ATP synthase subunit C YPZ3_RS21095 PF00119 ATP synthase A chain YPZ3_RS21100 PF03899 ATP synthase I chain YPZ3_RS21105 PF02527 rRNA small subunit methyltransferase G YPZ3_RS21110 PF13932 GidA associated domain YPZ3_RS21110 PF01134 Glucose inhibited division protein A YPZ3_RS21140 PF03590 Aspartate-ammonia ligase YPZ3_RS21150 PF05762 VWA domain containing CoxE-like protein YPZ3_RS21190 PF07690 Major Facilitator Superfamily YPZ3_RS21435 PF17191 RecG wedge domain YPZ3_RS21435 PF00271 Helicase conserved C-terminal domain YPZ3_RS21435 PF00270 DEAD/DEAH box helicase YPZ3_RS21550 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPZ3_RS21575 PF05762 VWA domain containing CoxE-like protein YPZ3_RS21830 PF00271 Helicase conserved C-terminal domain YPZ3_RS21830 PF00270 DEAD/DEAH box helicase YPZ3_RS21830 PF17191 RecG wedge domain YPZ3_RS21925 PF01467 Cytidylyltransferase-like YPZ3_RS21940 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPZ3_RS21980 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPZ3_RS21980 PF01676 Metalloenzyme superfamily YPZ3_RS22025 PF00512 His Kinase A (phospho-acceptor) domain YPZ3_RS22025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPZ3_RS22025 PF16527 Two-component sensor protein CpxA, periplasmic domain YPZ3_RS22025 PF00672 HAMP domain YPZ3_RS22115 PF02705 K+ potassium transporter