YP_RS00010 SM00344 helix_turn_helix ASNC type YP_RS00020 SM00327 von Willebrand factor (vWF) type A domain YP_RS00025 SM00382 ATPases associated with a variety of cellular activities YP_RS00055 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS00055 SM00895 YP_RS00055 YP_RS00115 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YP_RS00115 SM00474 3'-5' exonuclease YP_RS00115 SM00475 5'-3' exonuclease YP_RS00115 SM00482 DNA polymerase A domain YP_RS00125 SM01321 YP_RS00125 YP_RS00140 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_RS00145 SM00382 ATPases associated with a variety of cellular activities YP_RS00145 SM00448 cheY-homologous receiver domain YP_RS00150 SM00091 PAS domain YP_RS00150 SM00387 Histidine kinase-like ATPases YP_RS00150 SM00388 His Kinase A (phosphoacceptor) domain YP_RS00155 SM01230 YP_RS00155 YP_RS00185 SM00382 ATPases associated with a variety of cellular activities YP_RS00215 SM00487 DEAD-like helicases superfamily YP_RS00215 SM00490 helicase superfamily c-terminal domain YP_RS00225 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_RS00225 SM00954 Region found in RelA / SpoT proteins YP_RS00230 SM01409 YP_RS00230 YP_RS00235 SM00072 Guanylate kinase homologues. YP_RS00240 SM00532 Ligase N family YP_RS00295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain YP_RS00295 SM01232 YP_RS00295 YP_RS00335 SM00829 Enoylreductase YP_RS00355 SM00450 Rhodanese Homology Domain YP_RS00380 SM00971 Serine acetyltransferase, N-terminal YP_RS00390 SM00342 helix_turn_helix, arabinose operon control protein YP_RS00395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS00395 SM00387 Histidine kinase-like ATPases YP_RS00395 SM00388 His Kinase A (phosphoacceptor) domain YP_RS00400 SM00448 cheY-homologous receiver domain YP_RS00400 SM00862 Transcriptional regulatory protein, C terminal YP_RS00445 SM00382 ATPases associated with a variety of cellular activities YP_RS00520 SM01321 YP_RS00520 YP_RS00525 SM00382 ATPases associated with a variety of cellular activities YP_RS00560 SM00382 ATPases associated with a variety of cellular activities YP_RS00560 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS00575 SM00354 helix_turn _helix lactose operon repressor YP_RS00585 SM00487 DEAD-like helicases superfamily YP_RS00585 SM00490 helicase superfamily c-terminal domain YP_RS00635 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_RS00635 SM01134 YP_RS00635 YP_RS00645 SM00450 Rhodanese Homology Domain YP_RS00650 SM00421 helix_turn_helix, Lux Regulon YP_RS00700 SM00899 YP_RS00700 YP_RS00710 SM00316 Ribosomal protein S1-like RNA-binding domain YP_RS00710 SM00732 Likely ribonuclease with RNase H fold. YP_RS00720 SM00448 cheY-homologous receiver domain YP_RS00720 SM00862 Transcriptional regulatory protein, C terminal YP_RS00725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS00725 SM00387 Histidine kinase-like ATPases YP_RS00725 SM00388 His Kinase A (phosphoacceptor) domain YP_RS00740 SM00363 S4 RNA-binding domain YP_RS00870 SM00354 helix_turn _helix lactose operon repressor YP_RS00905 SM00100 Cyclic nucleotide-monophosphate binding domain YP_RS00905 SM00419 helix_turn_helix, cAMP Regulatory protein YP_RS00940 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS00945 SM00382 ATPases associated with a variety of cellular activities YP_RS00970 SM00382 ATPases associated with a variety of cellular activities YP_RS01035 SM00838 Elongation factor G C-terminus YP_RS01035 SM00889 Elongation factor G, domain IV YP_RS01045 SM01321 YP_RS01045 YP_RS01060 SM01403 YP_RS01060 YP_RS01080 SM01382 YP_RS01080 YP_RS01080 SM01383 YP_RS01080 YP_RS01095 SM00322 K homology RNA-binding domain YP_RS01115 SM01374 YP_RS01115 YP_RS01120 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YP_RS01185 SM00363 S4 RNA-binding domain YP_RS01185 SM01390 YP_RS01185 YP_RS01190 SM00662 RNA polymerases D YP_RS01200 SM00422 helix_turn_helix, mercury resistance YP_RS01310 SM00382 ATPases associated with a variety of cellular activities YP_RS01320 SM01321 YP_RS01320 YP_RS01345 SM01240 YP_RS01345 YP_RS01370 SM00644 YP_RS01370 YP_RS01385 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS01385 SM00895 YP_RS01385 YP_RS01410 SM01321 YP_RS01410 YP_RS01455 SM00947 Carbonic anhydrase YP_RS01460 SM00382 ATPases associated with a variety of cellular activities YP_RS01520 SM00487 DEAD-like helicases superfamily YP_RS01520 SM00490 helicase superfamily c-terminal domain YP_RS01520 SM00847 Helicase associated domain (HA2) Add an annotation YP_RS01530 SM00382 ATPases associated with a variety of cellular activities YP_RS01575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_RS01580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_RS01585 SM00073 Histidine Phosphotransfer domain YP_RS01585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS01585 SM00387 Histidine kinase-like ATPases YP_RS01585 SM00388 His Kinase A (phosphoacceptor) domain YP_RS01585 SM00448 cheY-homologous receiver domain YP_RS01590 SM00954 Region found in RelA / SpoT proteins YP_RS01610 SM01192 YP_RS01610 YP_RS01610 SM01193 YP_RS01610 YP_RS01715 SM00257 Lysin motif YP_RS01725 SM00533 DNA-binding domain of DNA mismatch repair MUTS family YP_RS01725 SM00534 ATPase domain of DNA mismatch repair MUTS family YP_RS01740 SM00829 Enoylreductase YP_RS01755 SM01120 YP_RS01755 YP_RS01770 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor YP_RS01785 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS01790 SM01235 YP_RS01790 YP_RS01850 SM00382 ATPases associated with a variety of cellular activities YP_RS01860 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_RS01860 SM01134 YP_RS01860 YP_RS01865 SM01007 Class II Aldolase and Adducin N-terminal domain YP_RS01870 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_RS01915 SM00382 ATPases associated with a variety of cellular activities YP_RS01930 SM00861 Transketolase, pyrimidine binding domain YP_RS01960 SM00382 ATPases associated with a variety of cellular activities YP_RS01970 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YP_RS02015 SM01091 Transporter associated domain YP_RS02025 SM00382 ATPases associated with a variety of cellular activities YP_RS02025 SM00962 SRP54-type protein, GTPase domain YP_RS02025 SM00963 SRP54-type protein, helical bundle domain YP_RS02060 SM00448 cheY-homologous receiver domain YP_RS02060 SM00850 LytTr DNA-binding domain YP_RS02070 SM00830 Chorismate mutase type II YP_RS02075 SM00830 Chorismate mutase type II YP_RS02080 SM00382 ATPases associated with a variety of cellular activities YP_RS02115 SM00421 helix_turn_helix, Lux Regulon YP_RS02115 SM00448 cheY-homologous receiver domain YP_RS02120 SM00387 Histidine kinase-like ATPases YP_RS02120 SM00388 His Kinase A (phosphoacceptor) domain YP_RS02120 SM00448 cheY-homologous receiver domain YP_RS02140 SM00342 helix_turn_helix, arabinose operon control protein YP_RS02180 SM00382 ATPases associated with a variety of cellular activities YP_RS02245 SM00382 ATPases associated with a variety of cellular activities YP_RS02285 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_RS02290 SM00382 ATPases associated with a variety of cellular activities YP_RS02400 SM00060 Fibronectin type 3 domain YP_RS02405 SM00869 Autotransporter beta-domain YP_RS02420 SM00563 Phosphate acyltransferases YP_RS02450 SM00829 Enoylreductase YP_RS02455 SM00382 ATPases associated with a variety of cellular activities YP_RS02460 SM01005 Alanine racemase, C-terminal domain YP_RS02495 SM01007 Class II Aldolase and Adducin N-terminal domain YP_RS02520 SM00342 helix_turn_helix, arabinose operon control protein YP_RS02525 SM00342 helix_turn_helix, arabinose operon control protein YP_RS02550 SM01276 YP_RS02550 YP_RS02575 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_RS02605 SM00883 Chaperonin 10 Kd subunit YP_RS02625 SM00841 Elongation factor P, C-terminal YP_RS02625 SM01185 YP_RS02625 YP_RS02685 SM00479 YP_RS02685 YP_RS02715 SM00257 Lysin motif YP_RS02715 SM00646 YP_RS02715 YP_RS02720 SM00853 MutL C terminal dimerisation domain YP_RS02720 SM01340 YP_RS02720 YP_RS02740 SM00244 prohibitin homologues YP_RS02745 SM00244 prohibitin homologues YP_RS02755 SM00788 Adenylosuccinate synthetase YP_RS02765 SM00316 Ribosomal protein S1-like RNA-binding domain YP_RS02765 SM00357 Cold shock protein domain YP_RS02765 SM00955 YP_RS02765 YP_RS02770 SM00967 RNA 2'-O ribose methyltransferase substrate binding YP_RS02825 SM00382 ATPases associated with a variety of cellular activities YP_RS02830 SM01321 YP_RS02830 YP_RS02875 SM00116 Domain in cystathionine beta-synthase and other proteins. YP_RS02875 SM01091 Transporter associated domain YP_RS02970 SM00387 Histidine kinase-like ATPases YP_RS02970 SM00388 His Kinase A (phosphoacceptor) domain YP_RS02975 SM00448 cheY-homologous receiver domain YP_RS02975 SM00862 Transcriptional regulatory protein, C terminal YP_RS02990 SM01103 YP_RS02990 YP_RS03000 SM00382 ATPases associated with a variety of cellular activities YP_RS03035 SM00316 Ribosomal protein S1-like RNA-binding domain YP_RS03035 SM00322 K homology RNA-binding domain YP_RS03055 SM01387 YP_RS03055 YP_RS03070 SM00316 Ribosomal protein S1-like RNA-binding domain YP_RS03070 SM00322 K homology RNA-binding domain YP_RS03075 SM00028 Tetratricopeptide repeats YP_RS03080 SM00487 DEAD-like helicases superfamily YP_RS03080 SM00490 helicase superfamily c-terminal domain YP_RS03095 SM00530 Helix-turn-helix XRE-family like proteins YP_RS03190 SM00859 Semialdehyde dehydrogenase, NAD binding domain YP_RS03195 SM00849 Metallo-beta-lactamase superfamily YP_RS03200 SM00072 Guanylate kinase homologues. YP_RS03210 SM00382 ATPases associated with a variety of cellular activities YP_RS03215 SM00382 ATPases associated with a variety of cellular activities YP_RS03240 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS03240 SM00866 YP_RS03240 YP_RS03255 SM00382 ATPases associated with a variety of cellular activities YP_RS03260 SM00382 ATPases associated with a variety of cellular activities YP_RS03345 SM00382 ATPases associated with a variety of cellular activities YP_RS03355 SM01321 YP_RS03355 YP_RS03370 SM00363 S4 RNA-binding domain YP_RS03380 SM00382 ATPases associated with a variety of cellular activities YP_RS03380 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS03425 SM00155 Phospholipase D. Active site motifs. YP_RS03430 SM00881 CoA binding domain YP_RS03435 SM01144 YP_RS03435 YP_RS03445 SM00967 RNA 2'-O ribose methyltransferase substrate binding YP_RS03460 SM00347 helix_turn_helix multiple antibiotic resistance protein YP_RS03505 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS03520 SM00382 ATPases associated with a variety of cellular activities YP_RS03530 SM00382 ATPases associated with a variety of cellular activities YP_RS03555 SM00710 Parallel beta-helix repeats YP_RS03555 SM00912 haemagglutination activity domain YP_RS03600 SM00900 YP_RS03600 YP_RS03655 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins YP_RS03680 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YP_RS03755 SM00448 cheY-homologous receiver domain YP_RS03755 SM00862 Transcriptional regulatory protein, C terminal YP_RS03760 SM00091 PAS domain YP_RS03760 SM00387 Histidine kinase-like ATPases YP_RS03760 SM00388 His Kinase A (phosphoacceptor) domain YP_RS03780 SM00642 Alpha-amylase domain YP_RS03825 SM01323 YP_RS03825 YP_RS03840 SM01321 YP_RS03840 YP_RS03890 SM01321 YP_RS03890 YP_RS03895 SM00861 Transketolase, pyrimidine binding domain YP_RS03915 SM00981 YP_RS03915 YP_RS04000 SM00382 ATPases associated with a variety of cellular activities YP_RS04000 SM00994 ClpX C4-type zinc finger YP_RS04000 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS04005 SM00382 ATPases associated with a variety of cellular activities YP_RS04005 SM00464 Found in ATP-dependent protease La (LON) YP_RS04010 SM00411 bacterial (prokaryotic) histone like domain YP_RS04050 SM00344 helix_turn_helix ASNC type YP_RS04055 SM00382 ATPases associated with a variety of cellular activities YP_RS04060 SM00382 ATPases associated with a variety of cellular activities YP_RS04065 SM00938 Nitrogen regulatory protein P-II YP_RS04160 SM00382 ATPases associated with a variety of cellular activities YP_RS04170 SM00493 YP_RS04170 YP_RS04175 SM00387 Histidine kinase-like ATPases YP_RS04330 SM00422 helix_turn_helix, mercury resistance YP_RS04340 SM00244 prohibitin homologues YP_RS04350 SM00822 YP_RS04350 YP_RS04360 SM00382 ATPases associated with a variety of cellular activities YP_RS04375 SM01001 AIR carboxylase YP_RS04390 SM00840 YP_RS04390 YP_RS04400 SM01321 YP_RS04400 YP_RS04460 SM00563 Phosphate acyltransferases YP_RS04470 SM00195 Dual specificity phosphatase, catalytic domain YP_RS04470 SM00404 Protein tyrosine phosphatase, catalytic domain motif YP_RS04485 SM00382 ATPases associated with a variety of cellular activities YP_RS04520 SM01321 YP_RS04520 YP_RS04660 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_RS04660 SM01134 YP_RS04660 YP_RS04680 SM00530 Helix-turn-helix XRE-family like proteins YP_RS04695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_RS04695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS04755 SM00421 helix_turn_helix, Lux Regulon YP_RS04755 SM00448 cheY-homologous receiver domain YP_RS04760 SM00387 Histidine kinase-like ATPases YP_RS04760 SM00388 His Kinase A (phosphoacceptor) domain YP_RS04760 SM00448 cheY-homologous receiver domain YP_RS04770 SM00434 DNA Topoisomerase IV YP_RS04800 SM00852 Probable molybdopterin binding domain YP_RS04815 SM01060 YP_RS04815 YP_RS04820 SM00487 DEAD-like helicases superfamily YP_RS04820 SM00488 YP_RS04820 YP_RS04820 SM00491 YP_RS04820 YP_RS04855 SM00382 ATPases associated with a variety of cellular activities YP_RS04875 SM00450 Rhodanese Homology Domain YP_RS04890 SM00382 ATPases associated with a variety of cellular activities YP_RS04935 SM00382 ATPases associated with a variety of cellular activities YP_RS04950 SM00507 HNH nucleases YP_RS04955 SM01118 YP_RS04955 YP_RS04985 SM01321 YP_RS04985 YP_RS04995 SM00490 helicase superfamily c-terminal domain YP_RS05030 SM00487 DEAD-like helicases superfamily YP_RS05030 SM00490 helicase superfamily c-terminal domain YP_RS05045 SM00382 ATPases associated with a variety of cellular activities YP_RS05080 SM00382 ATPases associated with a variety of cellular activities YP_RS05080 SM00448 cheY-homologous receiver domain YP_RS05085 SM00091 PAS domain YP_RS05085 SM00387 Histidine kinase-like ATPases YP_RS05085 SM00388 His Kinase A (phosphoacceptor) domain YP_RS05100 SM01321 YP_RS05100 YP_RS05145 SM01321 YP_RS05145 YP_RS05175 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_RS05195 SM00487 DEAD-like helicases superfamily YP_RS05195 SM00490 helicase superfamily c-terminal domain YP_RS05200 SM00382 ATPases associated with a variety of cellular activities YP_RS05220 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_RS05220 SM00876 Biotin and Thiamin Synthesis associated domain YP_RS05240 SM00382 ATPases associated with a variety of cellular activities YP_RS05265 SM00382 ATPases associated with a variety of cellular activities YP_RS05310 SM00855 Phosphoglycerate mutase family YP_RS05410 SM00881 CoA binding domain YP_RS05425 SM00861 Transketolase, pyrimidine binding domain YP_RS05495 SM01321 YP_RS05495 YP_RS05545 SM00778 Zinc-binding domain of primase-helicase YP_RS05575 SM00382 ATPases associated with a variety of cellular activities YP_RS05710 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_RS05725 SM00116 Domain in cystathionine beta-synthase and other proteins. YP_RS05725 SM01091 Transporter associated domain YP_RS05735 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS05750 SM00382 ATPases associated with a variety of cellular activities YP_RS05805 SM00936 Penicillin-binding protein 5, C-terminal domain YP_RS05820 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_RS05840 SM00357 Cold shock protein domain YP_RS05850 SM00421 helix_turn_helix, Lux Regulon YP_RS05875 SM00382 ATPases associated with a variety of cellular activities YP_RS05910 SM00382 ATPases associated with a variety of cellular activities YP_RS05945 SM01359 YP_RS05945 YP_RS05945 SM01360 YP_RS05945 YP_RS05995 SM00869 Autotransporter beta-domain YP_RS06025 SM01217 YP_RS06025 YP_RS06065 SM00382 ATPases associated with a variety of cellular activities YP_RS06070 SM00825 Beta-ketoacyl synthase YP_RS06075 SM01321 YP_RS06075 YP_RS06110 SM00382 ATPases associated with a variety of cellular activities YP_RS06115 SM00981 YP_RS06115 YP_RS06160 SM00849 Metallo-beta-lactamase superfamily YP_RS06175 SM01321 YP_RS06175 YP_RS06225 SM00357 Cold shock protein domain YP_RS06235 SM01150 YP_RS06235 YP_RS06245 SM00382 ATPases associated with a variety of cellular activities YP_RS06250 SM00849 Metallo-beta-lactamase superfamily YP_RS06260 SM00411 bacterial (prokaryotic) histone like domain YP_RS06265 SM00316 Ribosomal protein S1-like RNA-binding domain YP_RS06295 SM00870 YP_RS06295 YP_RS06335 SM00382 ATPases associated with a variety of cellular activities YP_RS06345 SM00843 YP_RS06345 YP_RS06350 SM00344 helix_turn_helix ASNC type YP_RS06365 SM00382 ATPases associated with a variety of cellular activities YP_RS06370 SM00382 ATPases associated with a variety of cellular activities YP_RS06380 SM00316 Ribosomal protein S1-like RNA-binding domain YP_RS06385 SM01321 YP_RS06385 YP_RS06390 SM00382 ATPases associated with a variety of cellular activities YP_RS06390 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS06400 SM00357 Cold shock protein domain YP_RS06405 SM00382 ATPases associated with a variety of cellular activities YP_RS06465 SM00830 Chorismate mutase type II YP_RS06470 SM00382 ATPases associated with a variety of cellular activities YP_RS06475 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS06475 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YP_RS06510 SM00382 ATPases associated with a variety of cellular activities YP_RS06525 SM00244 prohibitin homologues YP_RS06540 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS06540 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YP_RS06565 SM00382 ATPases associated with a variety of cellular activities YP_RS06605 SM00014 Acid phosphatase homologues YP_RS06610 SM01133 YP_RS06610 YP_RS06615 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_RS06615 SM01134 YP_RS06615 YP_RS06630 SM00936 Penicillin-binding protein 5, C-terminal domain YP_RS06640 SM00382 ATPases associated with a variety of cellular activities YP_RS06640 SM00930 YP_RS06640 YP_RS06670 SM00382 ATPases associated with a variety of cellular activities YP_RS06700 SM00518 AP endonuclease family 2 YP_RS06725 SM00862 Transcriptional regulatory protein, C terminal YP_RS06755 SM00382 ATPases associated with a variety of cellular activities YP_RS06805 SM00841 Elongation factor P, C-terminal YP_RS06805 SM01185 YP_RS06805 YP_RS06820 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS06820 SM00895 YP_RS06820 YP_RS06830 SM00833 Cobalamin synthesis protein cobW C-terminal domain YP_RS06835 SM00014 Acid phosphatase homologues YP_RS06845 SM00052 Putative diguanylate phosphodiesterase YP_RS06865 SM00382 ATPases associated with a variety of cellular activities YP_RS06880 SM00363 S4 RNA-binding domain YP_RS06885 SM00487 DEAD-like helicases superfamily YP_RS06885 SM00490 helicase superfamily c-terminal domain YP_RS06895 SM01321 YP_RS06895 YP_RS06935 SM00851 MGS-like domain YP_RS06945 SM00881 CoA binding domain YP_RS06950 SM00992 Hemimethylated DNA-binding protein YccV like YP_RS06955 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase YP_RS07000 SM00382 ATPases associated with a variety of cellular activities YP_RS07030 SM00825 Beta-ketoacyl synthase YP_RS07070 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YP_RS07110 SM00382 ATPases associated with a variety of cellular activities YP_RS07110 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS07205 SM00382 ATPases associated with a variety of cellular activities YP_RS07225 SM00852 Probable molybdopterin binding domain YP_RS07235 SM00382 ATPases associated with a variety of cellular activities YP_RS07265 SM00829 Enoylreductase YP_RS07295 SM00382 ATPases associated with a variety of cellular activities YP_RS07310 SM00919 Malic enzyme, NAD binding domain YP_RS07310 SM01274 YP_RS07310 YP_RS07355 SM01321 YP_RS07355 YP_RS07385 SM01091 Transporter associated domain YP_RS07405 SM01006 Siderophore biosynthesis protein domain YP_RS07415 SM00382 ATPases associated with a variety of cellular activities YP_RS07455 SM01350 YP_RS07455 YP_RS07515 SM00382 ATPases associated with a variety of cellular activities YP_RS07520 SM00382 ATPases associated with a variety of cellular activities YP_RS07555 SM00634 Bacterial Ig-like domain (group 1) YP_RS07580 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YP_RS07625 SM00421 helix_turn_helix, Lux Regulon YP_RS07625 SM00448 cheY-homologous receiver domain YP_RS07665 SM00354 helix_turn _helix lactose operon repressor YP_RS07690 SM00090 RIO-like kinase YP_RS07695 SM00382 ATPases associated with a variety of cellular activities YP_RS07705 SM00342 helix_turn_helix, arabinose operon control protein YP_RS07760 SM00357 Cold shock protein domain YP_RS07780 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YP_RS07780 SM00091 PAS domain YP_RS07780 SM00267 diguanylate cyclase YP_RS07785 SM00382 ATPases associated with a variety of cellular activities YP_RS07820 SM00382 ATPases associated with a variety of cellular activities YP_RS07850 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS07850 SM00866 YP_RS07850 YP_RS07985 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YP_RS07985 SM00465 GIY-YIG type nucleases (URI domain) YP_RS07990 SM00421 helix_turn_helix, Lux Regulon YP_RS07990 SM00448 cheY-homologous receiver domain YP_RS08075 SM00382 ATPases associated with a variety of cellular activities YP_RS08085 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS08085 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YP_RS08130 SM00342 helix_turn_helix, arabinose operon control protein YP_RS08145 SM00478 endonuclease III YP_RS08180 SM00382 ATPases associated with a variety of cellular activities YP_RS08250 SM00382 ATPases associated with a variety of cellular activities YP_RS08265 SM01007 Class II Aldolase and Adducin N-terminal domain YP_RS08285 SM00047 Lysozyme subfamily 2 YP_RS08330 SM00858 YP_RS08330 YP_RS08345 SM00634 Bacterial Ig-like domain (group 1) YP_RS08350 SM01321 YP_RS08350 YP_RS08435 SM01022 YP_RS08435 YP_RS08445 SM00487 DEAD-like helicases superfamily YP_RS08445 SM00490 helicase superfamily c-terminal domain YP_RS08475 SM00903 Flavin reductase like domain YP_RS08525 SM00347 helix_turn_helix multiple antibiotic resistance protein YP_RS08530 SM01091 Transporter associated domain YP_RS08570 SM00382 ATPases associated with a variety of cellular activities YP_RS08630 SM00822 YP_RS08630 YP_RS08630 SM00823 Phosphopantetheine attachment site YP_RS08630 SM00824 Thioesterase YP_RS08630 SM00825 Beta-ketoacyl synthase YP_RS08630 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YP_RS08635 SM00823 Phosphopantetheine attachment site YP_RS08640 SM00342 helix_turn_helix, arabinose operon control protein YP_RS08645 SM00382 ATPases associated with a variety of cellular activities YP_RS08650 SM00382 ATPases associated with a variety of cellular activities YP_RS08700 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS08700 SM00387 Histidine kinase-like ATPases YP_RS08700 SM00388 His Kinase A (phosphoacceptor) domain YP_RS08700 SM00448 cheY-homologous receiver domain YP_RS08705 SM00421 helix_turn_helix, Lux Regulon YP_RS08705 SM00448 cheY-homologous receiver domain YP_RS08770 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_RS08770 SM01134 YP_RS08770 YP_RS08810 SM00382 ATPases associated with a variety of cellular activities YP_RS08880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS08880 SM00387 Histidine kinase-like ATPases YP_RS08885 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS08935 SM00866 YP_RS08935 YP_RS08940 SM00382 ATPases associated with a variety of cellular activities YP_RS08950 SM01022 YP_RS08950 YP_RS08960 SM00972 Spore Coat Protein U domain YP_RS08975 SM00972 Spore Coat Protein U domain YP_RS08980 SM00972 Spore Coat Protein U domain YP_RS08985 SM00972 Spore Coat Protein U domain YP_RS09005 SM00945 ProQ/FINO family YP_RS09010 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_RS09010 SM00245 tail specific protease YP_RS09055 SM00346 helix_turn_helix isocitrate lyase regulation YP_RS09060 SM00644 YP_RS09060 YP_RS09085 SM00382 ATPases associated with a variety of cellular activities YP_RS09130 SM00487 DEAD-like helicases superfamily YP_RS09130 SM00490 helicase superfamily c-terminal domain YP_RS09130 SM00982 YP_RS09130 YP_RS09130 SM01058 CarD-like/TRCF domain YP_RS09140 SM00382 ATPases associated with a variety of cellular activities YP_RS09165 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. YP_RS09170 SM00387 Histidine kinase-like ATPases YP_RS09170 SM00388 His Kinase A (phosphoacceptor) domain YP_RS09175 SM00448 cheY-homologous receiver domain YP_RS09175 SM00862 Transcriptional regulatory protein, C terminal YP_RS09210 SM01329 YP_RS09210 YP_RS09215 SM00354 helix_turn _helix lactose operon repressor YP_RS09225 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YP_RS09225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_RS09260 SM00344 helix_turn_helix ASNC type YP_RS09270 SM00829 Enoylreductase YP_RS09275 SM01038 Beta galactosidase small chain YP_RS09280 SM00357 Cold shock protein domain YP_RS09305 SM00831 Cation transporter/ATPase, N-terminus YP_RS09330 SM00073 Histidine Phosphotransfer domain YP_RS09330 SM00260 Two component signalling adaptor domain YP_RS09330 SM00387 Histidine kinase-like ATPases YP_RS09330 SM01231 YP_RS09330 YP_RS09335 SM00260 Two component signalling adaptor domain YP_RS09365 SM00869 Autotransporter beta-domain YP_RS09380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_RS09380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS09380 SM00319 Homologues of the ligand binding domain of Tar YP_RS09385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_RS09385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS09385 SM00319 Homologues of the ligand binding domain of Tar YP_RS09390 SM00138 Methyltransferase, chemotaxis proteins YP_RS09395 SM00448 cheY-homologous receiver domain YP_RS09400 SM00448 cheY-homologous receiver domain YP_RS09415 SM00644 YP_RS09415 YP_RS09465 SM00382 ATPases associated with a variety of cellular activities YP_RS09475 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS09550 SM00671 Sel1-like repeats. YP_RS09555 SM00671 Sel1-like repeats. YP_RS09610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS09610 SM00387 Histidine kinase-like ATPases YP_RS09610 SM00388 His Kinase A (phosphoacceptor) domain YP_RS09615 SM00448 cheY-homologous receiver domain YP_RS09615 SM00862 Transcriptional regulatory protein, C terminal YP_RS09650 SM00450 Rhodanese Homology Domain YP_RS09685 SM01400 YP_RS09685 YP_RS09710 SM00937 YP_RS09710 YP_RS09800 SM00481 DNA polymerase alpha chain like domain YP_RS09845 SM00836 DALR anticodon binding domain YP_RS09845 SM01016 Arginyl tRNA synthetase N terminal dom YP_RS09905 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YP_RS09910 SM00382 ATPases associated with a variety of cellular activities YP_RS09920 SM00382 ATPases associated with a variety of cellular activities YP_RS09930 SM00257 Lysin motif YP_RS09975 SM00487 DEAD-like helicases superfamily YP_RS09975 SM00491 YP_RS09975 YP_RS09995 SM00341 Helicase and RNase D C-terminal YP_RS09995 SM00474 3'-5' exonuclease YP_RS10045 SM00382 ATPases associated with a variety of cellular activities YP_RS10080 SM01040 BRO family, N-terminal domain YP_RS10130 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS10170 SM00763 PrkA AAA domain YP_RS10185 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YP_RS10205 SM00870 YP_RS10205 YP_RS10225 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YP_RS10225 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YP_RS10225 SM00493 YP_RS10225 YP_RS10265 SM00448 cheY-homologous receiver domain YP_RS10270 SM00984 UDP binding domain YP_RS10275 SM00528 Domain in histone-like proteins of HNS family YP_RS10310 SM00382 ATPases associated with a variety of cellular activities YP_RS10315 SM00382 ATPases associated with a variety of cellular activities YP_RS10335 SM00155 Phospholipase D. Active site motifs. YP_RS10400 SM00749 bacterial OsmY and nodulation domain YP_RS10445 SM00481 DNA polymerase alpha chain like domain YP_RS10455 SM00363 S4 RNA-binding domain YP_RS10465 SM00822 YP_RS10465 YP_RS10485 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain YP_RS10485 SM00437 Bacterial DNA topoisomerase I DNA-binding domain YP_RS10485 SM00493 YP_RS10485 YP_RS10510 SM00014 Acid phosphatase homologues YP_RS10520 SM00028 Tetratricopeptide repeats YP_RS10530 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family YP_RS10545 SM01007 Class II Aldolase and Adducin N-terminal domain YP_RS10570 SM00357 Cold shock protein domain YP_RS10570 SM00955 YP_RS10570 YP_RS10585 SM00478 endonuclease III YP_RS10585 SM00525 YP_RS10585 YP_RS10595 SM00900 YP_RS10595 YP_RS10605 SM00342 helix_turn_helix, arabinose operon control protein YP_RS10650 SM00382 ATPases associated with a variety of cellular activities YP_RS10670 SM00382 ATPases associated with a variety of cellular activities YP_RS10745 SM00354 helix_turn _helix lactose operon repressor YP_RS10770 SM00382 ATPases associated with a variety of cellular activities YP_RS10825 SM00098 Alkaline phosphatase homologues YP_RS10835 SM00100 Cyclic nucleotide-monophosphate binding domain YP_RS10835 SM00419 helix_turn_helix, cAMP Regulatory protein YP_RS10850 SM01002 Alanine dehydrogenase/PNT, C-terminal domain YP_RS10850 SM01003 Alanine dehydrogenase/PNT, N-terminal domain YP_RS10875 SM00448 cheY-homologous receiver domain YP_RS10875 SM00862 Transcriptional regulatory protein, C terminal YP_RS10880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS10880 SM00388 His Kinase A (phosphoacceptor) domain YP_RS10890 SM00382 ATPases associated with a variety of cellular activities YP_RS10895 SM00387 Histidine kinase-like ATPases YP_RS10905 SM01321 YP_RS10905 YP_RS10930 SM00867 YceI-like domain YP_RS10950 SM00020 Trypsin-like serine protease YP_RS10955 SM00530 Helix-turn-helix XRE-family like proteins YP_RS10965 SM00382 ATPases associated with a variety of cellular activities YP_RS10965 SM00487 DEAD-like helicases superfamily YP_RS10965 SM00490 helicase superfamily c-terminal domain YP_RS10965 SM00847 Helicase associated domain (HA2) Add an annotation YP_RS11025 SM00890 Domain of unknown function YP_RS11040 SM00422 helix_turn_helix, mercury resistance YP_RS11060 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YP_RS11070 SM01321 YP_RS11070 YP_RS11075 SM00091 PAS domain YP_RS11075 SM00382 ATPases associated with a variety of cellular activities YP_RS11085 SM00953 YP_RS11085 YP_RS11120 SM00382 ATPases associated with a variety of cellular activities YP_RS11125 SM01321 YP_RS11125 YP_RS11155 SM00382 ATPases associated with a variety of cellular activities YP_RS11160 SM00382 ATPases associated with a variety of cellular activities YP_RS11195 SM00363 S4 RNA-binding domain YP_RS11220 SM00347 helix_turn_helix multiple antibiotic resistance protein YP_RS11260 SM00479 YP_RS11260 YP_RS11285 SM00354 helix_turn _helix lactose operon repressor YP_RS11340 SM01321 YP_RS11340 YP_RS11350 SM00382 ATPases associated with a variety of cellular activities YP_RS11375 SM00382 ATPases associated with a variety of cellular activities YP_RS11475 SM00382 ATPases associated with a variety of cellular activities YP_RS11495 SM00411 bacterial (prokaryotic) histone like domain YP_RS11500 SM00873 B3/4 domain YP_RS11500 SM00874 tRNA synthetase B5 domain YP_RS11500 SM00896 Ferredoxin-fold anticodon binding domain YP_RS11525 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain YP_RS11560 SM00382 ATPases associated with a variety of cellular activities YP_RS11650 SM01321 YP_RS11650 YP_RS11685 SM01321 YP_RS11685 YP_RS11690 SM00825 Beta-ketoacyl synthase YP_RS11700 SM00822 YP_RS11700 YP_RS11705 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. YP_RS11735 SM00363 S4 RNA-binding domain YP_RS11740 SM00316 Ribosomal protein S1-like RNA-binding domain YP_RS11780 SM00421 helix_turn_helix, Lux Regulon YP_RS11790 SM00450 Rhodanese Homology Domain YP_RS11820 SM00421 helix_turn_helix, Lux Regulon YP_RS11925 SM00354 helix_turn _helix lactose operon repressor YP_RS11935 SM00382 ATPases associated with a variety of cellular activities YP_RS11965 SM00912 haemagglutination activity domain YP_RS11995 SM01329 YP_RS11995 YP_RS12005 SM00354 helix_turn _helix lactose operon repressor YP_RS12015 SM00382 ATPases associated with a variety of cellular activities YP_RS12025 SM00829 Enoylreductase YP_RS12075 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS12075 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. YP_RS12085 SM00382 ATPases associated with a variety of cellular activities YP_RS12090 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) YP_RS12090 SM00091 PAS domain YP_RS12090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_RS12115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YP_RS12185 SM00354 helix_turn _helix lactose operon repressor YP_RS12250 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_RS12250 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YP_RS12255 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YP_RS12295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_RS12340 SM00354 helix_turn _helix lactose operon repressor YP_RS12370 SM00052 Putative diguanylate phosphodiesterase YP_RS12380 SM00382 ATPases associated with a variety of cellular activities YP_RS12395 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS12440 SM00859 Semialdehyde dehydrogenase, NAD binding domain YP_RS12450 SM00342 helix_turn_helix, arabinose operon control protein YP_RS12480 SM00825 Beta-ketoacyl synthase YP_RS12520 SM00463 Small MutS-related domain YP_RS12530 SM00855 Phosphoglycerate mutase family YP_RS12600 SM00382 ATPases associated with a variety of cellular activities YP_RS12675 SM00382 ATPases associated with a variety of cellular activities YP_RS12700 SM00382 ATPases associated with a variety of cellular activities YP_RS12750 SM00357 Cold shock protein domain YP_RS12770 SM00382 ATPases associated with a variety of cellular activities YP_RS12775 SM00382 ATPases associated with a variety of cellular activities YP_RS12795 SM00988 UreE urease accessory protein, N-terminal domain YP_RS12870 SM00342 helix_turn_helix, arabinose operon control protein YP_RS12915 SM00448 cheY-homologous receiver domain YP_RS12915 SM00862 Transcriptional regulatory protein, C terminal YP_RS12920 SM00387 Histidine kinase-like ATPases YP_RS12920 SM00388 His Kinase A (phosphoacceptor) domain YP_RS12980 SM00797 Allophanate hydrolase subunit 2 YP_RS13005 SM00986 Uracil DNA glycosylase superfamily YP_RS13005 SM00987 UreE urease accessory protein, C-terminal domain YP_RS13025 SM00248 ankyrin repeats YP_RS13030 SM00487 DEAD-like helicases superfamily YP_RS13030 SM00490 helicase superfamily c-terminal domain YP_RS13080 SM00358 Double-stranded RNA binding motif YP_RS13080 SM00535 Ribonuclease III family YP_RS13110 SM01321 YP_RS13110 YP_RS13130 SM00382 ATPases associated with a variety of cellular activities YP_RS13155 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS13160 SM01211 YP_RS13160 YP_RS13180 SM01321 YP_RS13180 YP_RS13185 SM00387 Histidine kinase-like ATPases YP_RS13185 SM00388 His Kinase A (phosphoacceptor) domain YP_RS13195 SM00382 ATPases associated with a variety of cellular activities YP_RS13195 SM00448 cheY-homologous receiver domain YP_RS13205 SM00938 Nitrogen regulatory protein P-II YP_RS13290 SM00271 DnaJ molecular chaperone homology domain YP_RS13350 SM00382 ATPases associated with a variety of cellular activities YP_RS13350 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS13395 SM00421 helix_turn_helix, Lux Regulon YP_RS13415 SM00382 ATPases associated with a variety of cellular activities YP_RS13435 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_RS13575 SM00278 Helix-hairpin-helix DNA-binding motif class 1 YP_RS13575 SM00292 breast cancer carboxy-terminal domain YP_RS13575 SM00532 Ligase N family YP_RS13580 SM00771 ZipA, C-terminal domain (FtsZ-binding) YP_RS13610 SM01321 YP_RS13610 YP_RS13620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS13620 SM00387 Histidine kinase-like ATPases YP_RS13620 SM00388 His Kinase A (phosphoacceptor) domain YP_RS13625 SM00448 cheY-homologous receiver domain YP_RS13625 SM00862 Transcriptional regulatory protein, C terminal YP_RS13635 SM00382 ATPases associated with a variety of cellular activities YP_RS13640 SM00450 Rhodanese Homology Domain YP_RS13670 SM00327 von Willebrand factor (vWF) type A domain YP_RS13675 SM00387 Histidine kinase-like ATPases YP_RS13675 SM00388 His Kinase A (phosphoacceptor) domain YP_RS13680 SM00448 cheY-homologous receiver domain YP_RS13680 SM00862 Transcriptional regulatory protein, C terminal YP_RS13695 SM00382 ATPases associated with a variety of cellular activities YP_RS13740 SM00364 Leucine-rich repeats, bacterial type YP_RS13740 SM00369 Leucine-rich repeats, typical (most populated) subfamily YP_RS13750 SM01130 YP_RS13750 YP_RS13770 SM00869 Autotransporter beta-domain YP_RS13800 SM00919 Malic enzyme, NAD binding domain YP_RS13800 SM01274 YP_RS13800 YP_RS13820 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_RS13835 SM00421 helix_turn_helix, Lux Regulon YP_RS13835 SM00448 cheY-homologous receiver domain YP_RS13870 SM00382 ATPases associated with a variety of cellular activities YP_RS13930 SM01321 YP_RS13930 YP_RS13945 SM01130 YP_RS13945 YP_RS13995 SM01321 YP_RS13995 YP_RS14030 SM00382 ATPases associated with a variety of cellular activities YP_RS14060 SM00924 MgtE intracellular N domain YP_RS14090 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS14095 SM00382 ATPases associated with a variety of cellular activities YP_RS14120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS14120 SM00387 Histidine kinase-like ATPases YP_RS14120 SM00388 His Kinase A (phosphoacceptor) domain YP_RS14125 SM00448 cheY-homologous receiver domain YP_RS14125 SM00862 Transcriptional regulatory protein, C terminal YP_RS14140 SM00046 Diacylglycerol kinase catalytic domain (presumed) YP_RS14205 SM01321 YP_RS14205 YP_RS14225 SM00116 Domain in cystathionine beta-synthase and other proteins. YP_RS14225 SM01240 YP_RS14225 YP_RS14250 SM00564 beta-propeller repeat YP_RS14270 SM00530 Helix-turn-helix XRE-family like proteins YP_RS14275 SM00028 Tetratricopeptide repeats YP_RS14285 SM00562 YP_RS14285 YP_RS14290 SM00247 Beta/gamma crystallins YP_RS14300 SM00869 Autotransporter beta-domain YP_RS14360 SM00382 ATPases associated with a variety of cellular activities YP_RS14385 SM00479 YP_RS14385 YP_RS14400 SM00849 Metallo-beta-lactamase superfamily YP_RS14405 SM00257 Lysin motif YP_RS14460 SM00382 ATPases associated with a variety of cellular activities YP_RS14460 SM00930 YP_RS14460 YP_RS14500 SM01322 YP_RS14500 YP_RS14520 SM00977 TilS substrate C-terminal domain YP_RS14535 SM00481 DNA polymerase alpha chain like domain YP_RS14565 SM00935 Outer membrane protein (OmpH-like) YP_RS14575 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_RS14620 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_RS14650 SM01321 YP_RS14650 YP_RS14670 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs YP_RS14670 SM00475 5'-3' exonuclease YP_RS14705 SM00925 MltA specific insert domain YP_RS14720 SM00646 YP_RS14720 YP_RS14735 SM00382 ATPases associated with a variety of cellular activities YP_RS14745 SM00869 Autotransporter beta-domain YP_RS14765 SM00947 Carbonic anhydrase YP_RS14785 SM00382 ATPases associated with a variety of cellular activities YP_RS14840 SM00862 Transcriptional regulatory protein, C terminal YP_RS14860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_RS14860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS14860 SM00319 Homologues of the ligand binding domain of Tar YP_RS14870 SM00849 Metallo-beta-lactamase superfamily YP_RS14895 SM00354 helix_turn _helix lactose operon repressor YP_RS14905 SM00563 Phosphate acyltransferases YP_RS14930 SM00927 DNA mismatch repair enzyme MutH YP_RS14950 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. YP_RS15010 SM00382 ATPases associated with a variety of cellular activities YP_RS15070 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS15070 SM00895 YP_RS15070 YP_RS15095 SM00858 YP_RS15095 YP_RS15105 SM01321 YP_RS15105 YP_RS15125 SM00869 Autotransporter beta-domain YP_RS15160 SM00327 von Willebrand factor (vWF) type A domain YP_RS15165 SM00327 von Willebrand factor (vWF) type A domain YP_RS15175 SM00327 von Willebrand factor (vWF) type A domain YP_RS15185 SM00912 haemagglutination activity domain YP_RS15220 SM00869 Autotransporter beta-domain YP_RS15235 SM00382 ATPases associated with a variety of cellular activities YP_RS15245 SM00354 helix_turn _helix lactose operon repressor YP_RS15270 SM01217 YP_RS15270 YP_RS15420 SM00400 zinc finger YP_RS15420 SM00493 YP_RS15420 YP_RS15420 SM00766 DNA primase DnaG DnaB-binding YP_RS15435 SM01207 YP_RS15435 YP_RS15440 SM00905 Dihydroneopterin aldolase YP_RS15450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. YP_RS15455 SM00287 Bacterial SH3 domain homologues YP_RS15460 SM01118 YP_RS15460 YP_RS15540 SM00387 Histidine kinase-like ATPases YP_RS15540 SM00433 TopoisomeraseII YP_RS15555 SM00434 DNA Topoisomerase IV YP_RS15560 SM00563 Phosphate acyltransferases YP_RS15590 SM00342 helix_turn_helix, arabinose operon control protein YP_RS15680 SM01321 YP_RS15680 YP_RS15750 SM00382 ATPases associated with a variety of cellular activities YP_RS15775 SM00382 ATPases associated with a variety of cellular activities YP_RS15795 SM00858 YP_RS15795 YP_RS15865 SM00862 Transcriptional regulatory protein, C terminal YP_RS15995 SM00382 ATPases associated with a variety of cellular activities YP_RS16045 SM00912 haemagglutination activity domain YP_RS16050 SM01018 B12 binding domain YP_RS16055 SM00346 helix_turn_helix isocitrate lyase regulation YP_RS16125 SM00798 AICARFT/IMPCHase bienzyme YP_RS16125 SM00851 MGS-like domain YP_RS16130 SM01209 YP_RS16130 YP_RS16130 SM01210 YP_RS16130 YP_RS16140 SM00411 bacterial (prokaryotic) histone like domain YP_RS16205 SM00876 Biotin and Thiamin Synthesis associated domain YP_RS16215 SM00663 RNA polymerase I subunit A N-terminus YP_RS16240 SM00649 Ribosomal protein L11/L12 YP_RS16245 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YP_RS16245 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YP_RS16300 SM00859 Semialdehyde dehydrogenase, NAD binding domain YP_RS16330 SM00382 ATPases associated with a variety of cellular activities YP_RS16435 SM00382 ATPases associated with a variety of cellular activities YP_RS16460 SM00382 ATPases associated with a variety of cellular activities YP_RS16540 SM00507 HNH nucleases YP_RS16610 SM00487 DEAD-like helicases superfamily YP_RS16610 SM00490 helicase superfamily c-terminal domain YP_RS16620 SM00357 Cold shock protein domain YP_RS16620 SM00382 ATPases associated with a variety of cellular activities YP_RS16620 SM00959 Rho termination factor, N-terminal domain YP_RS16640 SM00984 UDP binding domain YP_RS16710 SM01321 YP_RS16710 YP_RS16740 SM01219 YP_RS16740 YP_RS16810 SM00341 Helicase and RNase D C-terminal YP_RS16810 SM00487 DEAD-like helicases superfamily YP_RS16810 SM00490 helicase superfamily c-terminal domain YP_RS16810 SM00956 YP_RS16810 YP_RS16915 SM00382 ATPases associated with a variety of cellular activities YP_RS16915 SM00962 SRP54-type protein, GTPase domain YP_RS16915 SM00963 SRP54-type protein, helical bundle domain YP_RS16920 SM00382 ATPases associated with a variety of cellular activities YP_RS16940 SM01321 YP_RS16940 YP_RS16965 SM00382 ATPases associated with a variety of cellular activities YP_RS16970 SM00382 ATPases associated with a variety of cellular activities YP_RS17025 SM00382 ATPases associated with a variety of cellular activities YP_RS17125 SM00382 ATPases associated with a variety of cellular activities YP_RS17135 SM01004 Delta-aminolevulinic acid dehydratase YP_RS17140 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. YP_RS17140 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. YP_RS17235 SM00382 ATPases associated with a variety of cellular activities YP_RS17280 SM00642 Alpha-amylase domain YP_RS17285 SM00642 Alpha-amylase domain YP_RS17295 SM00257 Lysin motif YP_RS17295 SM00634 Bacterial Ig-like domain (group 1) YP_RS17320 SM00859 Semialdehyde dehydrogenase, NAD binding domain YP_RS17355 SM00354 helix_turn _helix lactose operon repressor YP_RS17370 SM00448 cheY-homologous receiver domain YP_RS17370 SM00862 Transcriptional regulatory protein, C terminal YP_RS17400 SM00382 ATPases associated with a variety of cellular activities YP_RS17405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS17405 SM00387 Histidine kinase-like ATPases YP_RS17405 SM00388 His Kinase A (phosphoacceptor) domain YP_RS17405 SM00448 cheY-homologous receiver domain YP_RS17420 SM01321 YP_RS17420 YP_RS17435 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YP_RS17440 SM00235 Zinc-dependent metalloprotease YP_RS17495 SM00869 Autotransporter beta-domain YP_RS17515 SM00052 Putative diguanylate phosphodiesterase YP_RS17555 SM00052 Putative diguanylate phosphodiesterase YP_RS17555 SM00267 diguanylate cyclase YP_RS17565 SM00382 ATPases associated with a variety of cellular activities YP_RS17570 SM00382 ATPases associated with a variety of cellular activities YP_RS17600 SM00912 haemagglutination activity domain YP_RS17615 SM00387 Histidine kinase-like ATPases YP_RS17620 SM00421 helix_turn_helix, Lux Regulon YP_RS17620 SM00448 cheY-homologous receiver domain YP_RS17640 SM00382 ATPases associated with a variety of cellular activities YP_RS17695 SM00382 ATPases associated with a variety of cellular activities YP_RS17710 SM00530 Helix-turn-helix XRE-family like proteins YP_RS17740 SM00342 helix_turn_helix, arabinose operon control protein YP_RS17750 SM00382 ATPases associated with a variety of cellular activities YP_RS17815 SM00052 Putative diguanylate phosphodiesterase YP_RS17815 SM00091 PAS domain YP_RS17815 SM00267 diguanylate cyclase YP_RS17840 SM00869 Autotransporter beta-domain YP_RS17845 SM00364 Leucine-rich repeats, bacterial type YP_RS17850 SM00364 Leucine-rich repeats, bacterial type YP_RS17855 SM00364 Leucine-rich repeats, bacterial type YP_RS17855 SM00369 Leucine-rich repeats, typical (most populated) subfamily YP_RS17875 SM00823 Phosphopantetheine attachment site YP_RS17875 SM00825 Beta-ketoacyl synthase YP_RS17915 SM00382 ATPases associated with a variety of cellular activities YP_RS17920 SM00382 ATPases associated with a variety of cellular activities YP_RS17945 SM00869 Autotransporter beta-domain YP_RS17950 SM00869 Autotransporter beta-domain YP_RS17985 SM00354 helix_turn _helix lactose operon repressor YP_RS18015 SM01006 Siderophore biosynthesis protein domain YP_RS18045 SM00421 helix_turn_helix, Lux Regulon YP_RS18110 SM00382 ATPases associated with a variety of cellular activities YP_RS18110 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS18195 SM00382 ATPases associated with a variety of cellular activities YP_RS18225 SM00478 endonuclease III YP_RS18225 SM00525 YP_RS18225 YP_RS18265 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_RS18275 SM01152 YP_RS18275 YP_RS18295 SM00382 ATPases associated with a variety of cellular activities YP_RS18310 SM00732 Likely ribonuclease with RNase H fold. YP_RS18335 SM00731 SprT homologues. YP_RS18360 SM00861 Transketolase, pyrimidine binding domain YP_RS18365 SM01321 YP_RS18365 YP_RS18370 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YP_RS18400 SM00382 ATPases associated with a variety of cellular activities YP_RS18410 SM01321 YP_RS18410 YP_RS18420 SM00420 helix_turn_helix, Deoxyribose operon repressor YP_RS18420 SM01134 YP_RS18420 YP_RS18500 SM00354 helix_turn _helix lactose operon repressor YP_RS18515 SM00354 helix_turn _helix lactose operon repressor YP_RS18555 SM00382 ATPases associated with a variety of cellular activities YP_RS18560 SM00382 ATPases associated with a variety of cellular activities YP_RS18675 SM00778 Zinc-binding domain of primase-helicase YP_RS18675 SM00885 D5 N terminal like YP_RS18680 SM00530 Helix-turn-helix XRE-family like proteins YP_RS18690 SM00530 Helix-turn-helix XRE-family like proteins YP_RS18725 SM00937 YP_RS18725 YP_RS18755 SM00387 Histidine kinase-like ATPases YP_RS18755 SM00388 His Kinase A (phosphoacceptor) domain YP_RS18760 SM00448 cheY-homologous receiver domain YP_RS18760 SM00862 Transcriptional regulatory protein, C terminal YP_RS18835 SM01011 Aminopeptidase P, N-terminal domain YP_RS18880 SM00382 ATPases associated with a variety of cellular activities YP_RS18895 SM00957 SecA DEAD-like domain YP_RS18895 SM00958 SecA preprotein cross-linking domain YP_RS18915 SM00864 Tubulin/FtsZ family, GTPase domain YP_RS18915 SM00865 Tubulin/FtsZ family, C-terminal domain YP_RS18920 SM00842 Cell division protein FtsA YP_RS18995 SM00354 helix_turn _helix lactose operon repressor YP_RS19005 SM01321 YP_RS19005 YP_RS19050 SM01321 YP_RS19050 YP_RS19055 SM00917 LeuA allosteric (dimerisation) domain YP_RS19060 SM01329 YP_RS19060 YP_RS19105 SM00382 ATPases associated with a variety of cellular activities YP_RS19115 SM00486 DNA polymerase type-B family YP_RS19120 SM00487 DEAD-like helicases superfamily YP_RS19120 SM00490 helicase superfamily c-terminal domain YP_RS19175 SM00382 ATPases associated with a variety of cellular activities YP_RS19175 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS19225 SM00271 DnaJ molecular chaperone homology domain YP_RS19245 SM00650 Ribosomal RNA adenine dimethylases YP_RS19295 SM00851 MGS-like domain YP_RS19295 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YP_RS19300 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain YP_RS19310 SM01321 YP_RS19310 YP_RS19345 SM00904 Riboflavin kinase YP_RS19370 SM00271 DnaJ molecular chaperone homology domain YP_RS19395 SM00852 Probable molybdopterin binding domain YP_RS19425 SM00448 cheY-homologous receiver domain YP_RS19425 SM00862 Transcriptional regulatory protein, C terminal YP_RS19435 SM00342 helix_turn_helix, arabinose operon control protein YP_RS19435 SM00871 Bacterial transcription activator, effector binding domain YP_RS19440 SM00855 Phosphoglycerate mutase family YP_RS19460 SM00831 Cation transporter/ATPase, N-terminus YP_RS19470 SM00267 diguanylate cyclase YP_RS19480 SM00382 ATPases associated with a variety of cellular activities YP_RS19490 SM00530 Helix-turn-helix XRE-family like proteins YP_RS19495 SM00382 ATPases associated with a variety of cellular activities YP_RS19520 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain YP_RS19525 SM01133 YP_RS19525 YP_RS19550 SM00749 bacterial OsmY and nodulation domain YP_RS19585 SM00267 diguanylate cyclase YP_RS19655 SM00382 ATPases associated with a variety of cellular activities YP_RS19675 SM01133 YP_RS19675 YP_RS19710 SM00342 helix_turn_helix, arabinose operon control protein YP_RS19785 SM00382 ATPases associated with a variety of cellular activities YP_RS19795 SM00382 ATPases associated with a variety of cellular activities YP_RS19835 SM00749 bacterial OsmY and nodulation domain YP_RS19855 SM00073 Histidine Phosphotransfer domain YP_RS19855 SM00091 PAS domain YP_RS19855 SM00387 Histidine kinase-like ATPases YP_RS19855 SM00388 His Kinase A (phosphoacceptor) domain YP_RS19855 SM00448 cheY-homologous receiver domain YP_RS19865 SM00729 Elongator protein 3, MiaB family, Radical SAM YP_RS19920 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_RS19925 SM01321 YP_RS19925 YP_RS19930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. YP_RS19965 SM00382 ATPases associated with a variety of cellular activities YP_RS19975 SM00116 Domain in cystathionine beta-synthase and other proteins. YP_RS19995 SM00382 ATPases associated with a variety of cellular activities YP_RS20045 SM00354 helix_turn _helix lactose operon repressor YP_RS20055 SM00642 Alpha-amylase domain YP_RS20190 SM00316 Ribosomal protein S1-like RNA-binding domain YP_RS20215 SM00052 Putative diguanylate phosphodiesterase YP_RS20215 SM00267 diguanylate cyclase YP_RS20220 SM00829 Enoylreductase YP_RS20245 SM00878 Biotin carboxylase C-terminal domain YP_RS20280 SM00345 helix_turn_helix gluconate operon transcriptional repressor YP_RS20280 SM00895 YP_RS20280 YP_RS20300 SM00849 Metallo-beta-lactamase superfamily YP_RS20315 SM00357 Cold shock protein domain YP_RS20320 SM00357 Cold shock protein domain YP_RS20325 SM01321 YP_RS20325 YP_RS20370 SM00382 ATPases associated with a variety of cellular activities YP_RS20405 SM00382 ATPases associated with a variety of cellular activities YP_RS20430 SM01133 YP_RS20430 YP_RS20445 SM00342 helix_turn_helix, arabinose operon control protein YP_RS20490 SM00530 Helix-turn-helix XRE-family like proteins YP_RS20505 SM00860 SMI1 / KNR4 family YP_RS20560 SM00382 ATPases associated with a variety of cellular activities YP_RS20560 SM01086 C-terminal, D2-small domain, of ClpB protein YP_RS20670 SM00926 Molybdopterin oxidoreductase Fe4S4 domain YP_RS20685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). YP_RS20685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain YP_RS20685 SM01358 YP_RS20685 YP_RS20760 SM00642 Alpha-amylase domain YP_RS20830 SM00387 Histidine kinase-like ATPases YP_RS20830 SM00433 TopoisomeraseII YP_RS20845 SM00480 DNA polymerase III beta subunit YP_RS20850 SM00382 ATPases associated with a variety of cellular activities YP_RS20850 SM00760 Bacterial dnaA protein helix-turn-helix domain YP_RS20910 SM00062 Bacterial periplasmic substrate-binding proteins YP_RS20925 SM00382 ATPases associated with a variety of cellular activities YP_RS20960 SM00382 ATPases associated with a variety of cellular activities YP_RS21005 SM01228 YP_RS21005 YP_RS21775 SM00448 cheY-homologous receiver domain