locus-tag class description YPTB_RS00075 PF00258 Flavodoxin YPTB_RS00080 PF01037 Lrp/AsnC ligand binding domain YPTB_RS00085 PF03590 Aspartate-ammonia ligase YPTB_RS00090 PF05762 VWA domain containing CoxE-like protein YPTB_RS00095 PF12592 Protein of unknown function (DUF3763) YPTB_RS00095 PF17868 AAA lid domain YPTB_RS00095 PF07728 AAA domain (dynein-related subfamily) YPTB_RS00100 PF02705 K+ potassium transporter YPTB_RS00105 PF05025 RbsD / FucU transport protein family YPTB_RS00110 PF00294 pfkB family carbohydrate kinase YPTB_RS00120 PF07690 Major Facilitator Superfamily YPTB_RS00125 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS00125 PF07729 FCD domain YPTB_RS00155 PF00872 Transposase, Mutator family YPTB_RS00160 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPTB_RS00170 PF06288 Protein of unknown function (DUF1040) YPTB_RS00175 PF01636 Phosphotransferase enzyme family YPTB_RS00180 PF01323 DSBA-like thioredoxin domain YPTB_RS00185 PF01367 5'-3' exonuclease, C-terminal SAM fold YPTB_RS00185 PF00476 DNA polymerase family A YPTB_RS00185 PF01612 3'-5' exonuclease YPTB_RS00185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPTB_RS00190 PF01926 50S ribosome-binding GTPase YPTB_RS00195 PF04220 Der GTPase activator (YihI) YPTB_RS00200 PF06969 HemN C-terminal domain YPTB_RS00200 PF04055 Radical SAM superfamily YPTB_RS00205 PF02954 Bacterial regulatory protein, Fis family YPTB_RS00205 PF00072 Response regulator receiver domain YPTB_RS00205 PF00158 Sigma-54 interaction domain YPTB_RS00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS00210 PF00989 PAS fold YPTB_RS00210 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS00215 PF03951 Glutamine synthetase, beta-Grasp domain YPTB_RS00215 PF00120 Glutamine synthetase, catalytic domain YPTB_RS00225 PF00009 Elongation factor Tu GTP binding domain YPTB_RS00225 PF00679 Elongation factor G C-terminus YPTB_RS00225 PF03144 Elongation factor Tu domain 2 YPTB_RS00230 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS00235 PF03631 Virulence factor BrkB YPTB_RS00240 PF02580 D-Tyr-tRNA(Tyr) deacylase YPTB_RS00245 PF09500 Putative thioesterase (yiiD_Cterm) YPTB_RS00245 PF00583 Acetyltransferase (GNAT) family YPTB_RS00250 PF05170 AsmA family YPTB_RS00255 PF00860 Permease family YPTB_RS00260 PF03616 Sodium/glutamate symporter YPTB_RS00265 PF17191 RecG wedge domain YPTB_RS00265 PF00270 DEAD/DEAH box helicase YPTB_RS00265 PF00271 Helicase conserved C-terminal domain YPTB_RS00270 PF12105 SpoU, rRNA methylase, C-terminal YPTB_RS00270 PF00588 SpoU rRNA Methylase family YPTB_RS00275 PF04607 Region found in RelA / SpoT proteins YPTB_RS00275 PF13291 ACT domain YPTB_RS00275 PF02824 TGS domain YPTB_RS00280 PF01192 RNA polymerase Rpb6 YPTB_RS00285 PF00625 Guanylate kinase YPTB_RS00290 PF01653 NAD-dependent DNA ligase adenylation domain YPTB_RS00290 PF03120 NAD-dependent DNA ligase OB-fold domain YPTB_RS00295 PF03458 UPF0126 domain YPTB_RS00300 PF08340 Domain of unknown function (DUF1732) YPTB_RS00300 PF03755 YicC-like family, N-terminal region YPTB_RS00305 PF01138 3' exoribonuclease family, domain 1 YPTB_RS00305 PF03725 3' exoribonuclease family, domain 2 YPTB_RS00310 PF00156 Phosphoribosyl transferase domain YPTB_RS00315 PF00440 Bacterial regulatory proteins, tetR family YPTB_RS00320 PF00692 dUTPase YPTB_RS00325 PF02441 Flavoprotein YPTB_RS00325 PF04127 DNA / pantothenate metabolism flavoprotein YPTB_RS00330 PF04002 RadC-like JAB domain YPTB_RS00335 PF00830 Ribosomal L28 family YPTB_RS00340 PF00471 Ribosomal protein L33 YPTB_RS00345 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPTB_RS00345 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPTB_RS00345 PF06827 Zinc finger found in FPG and IleRS YPTB_RS00350 PF01467 Cytidylyltransferase-like YPTB_RS00355 PF00535 Glycosyl transferase family 2 YPTB_RS00360 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPTB_RS00365 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTB_RS00370 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTB_RS00375 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS00380 PF00155 Aminotransferase class I and II YPTB_RS00385 PF08240 Alcohol dehydrogenase GroES-like domain YPTB_RS00385 PF00107 Zinc-binding dehydrogenase YPTB_RS00390 PF04748 Divergent polysaccharide deacetylase YPTB_RS00395 PF01551 Peptidase family M23 YPTB_RS00400 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPTB_RS00400 PF01676 Metalloenzyme superfamily YPTB_RS00405 PF00581 Rhodanese-like domain YPTB_RS00410 PF00462 Glutaredoxin YPTB_RS00415 PF02556 Preprotein translocase subunit SecB YPTB_RS00420 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPTB_RS00420 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPTB_RS00430 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB_RS00430 PF06426 Serine acetyltransferase, N-terminal YPTB_RS00435 PF00588 SpoU rRNA Methylase family YPTB_RS00440 PF02805 Metal binding domain of Ada YPTB_RS00440 PF12833 Helix-turn-helix domain YPTB_RS00440 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPTB_RS00440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTB_RS00445 PF00672 HAMP domain YPTB_RS00445 PF16527 Two-component sensor protein CpxA, periplasmic domain YPTB_RS00445 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS00445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS00450 PF00072 Response regulator receiver domain YPTB_RS00450 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS00455 PF07813 LTXXQ motif family protein YPTB_RS00460 PF04754 Putative transposase, YhgA-like YPTB_RS00465 PF16916 Dimerisation domain of Zinc Transporter YPTB_RS00465 PF01545 Cation efflux family YPTB_RS00470 PF00365 Phosphofructokinase YPTB_RS00485 PF00939 Sodium:sulfate symporter transmembrane region YPTB_RS00490 PF03737 Aldolase/RraA YPTB_RS00495 PF02585 GlcNAc-PI de-N-acetylase YPTB_RS00500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS00500 PF03466 LysR substrate binding domain YPTB_RS00505 PF00121 Triosephosphate isomerase YPTB_RS00510 PF07305 Protein of unknown function (DUF1454) YPTB_RS00515 PF05656 Protein of unknown function (DUF805) YPTB_RS00520 PF00970 Oxidoreductase FAD-binding domain YPTB_RS00520 PF00175 Oxidoreductase NAD-binding domain YPTB_RS00525 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPTB_RS00530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS00530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB_RS00535 PF00230 Major intrinsic protein YPTB_RS00545 PF06005 Cell division protein ZapB YPTB_RS00550 PF00664 ABC transporter transmembrane region YPTB_RS00550 PF00005 ABC transporter YPTB_RS00550 PF03412 Peptidase C39 family YPTB_RS00555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS00555 PF00529 HlyD membrane-fusion protein of T1SS YPTB_RS00575 PF03737 Aldolase/RraA YPTB_RS00580 PF01040 UbiA prenyltransferase family YPTB_RS00585 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS00585 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS00585 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS00590 PF00227 Proteasome subunit YPTB_RS00595 PF05036 Sporulation related domain YPTB_RS00600 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS00610 PF00270 DEAD/DEAH box helicase YPTB_RS00610 PF18074 Primosomal protein N C-terminal domain YPTB_RS00610 PF17764 3′ DNA-binding domain (3′BD) YPTB_RS00610 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPTB_RS00610 PF00271 Helicase conserved C-terminal domain YPTB_RS00615 PF01197 Ribosomal protein L31 YPTB_RS00620 PF05360 yiaA/B two helix domain YPTB_RS00630 PF01340 Met Apo-repressor, MetJ YPTB_RS00635 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTB_RS00640 PF03447 Homoserine dehydrogenase, NAD binding domain YPTB_RS00640 PF00742 Homoserine dehydrogenase YPTB_RS00640 PF00696 Amino acid kinase family YPTB_RS00645 PF02219 Methylenetetrahydrofolate reductase YPTB_RS00655 PF00311 Phosphoenolpyruvate carboxylase YPTB_RS00660 PF07687 Peptidase dimerisation domain YPTB_RS00660 PF01546 Peptidase family M20/M25/M40 YPTB_RS00665 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTB_RS00665 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTB_RS00670 PF00696 Amino acid kinase family YPTB_RS00675 PF14698 Argininosuccinate lyase C-terminal YPTB_RS00675 PF00206 Lyase YPTB_RS00685 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS00685 PF00593 TonB dependent receptor YPTB_RS00695 PF00664 ABC transporter transmembrane region YPTB_RS00695 PF00005 ABC transporter YPTB_RS00700 PF00529 HlyD membrane-fusion protein of T1SS YPTB_RS00705 PF03544 Gram-negative bacterial TonB protein C-terminal YPTB_RS00710 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS00710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB_RS00715 PF08534 Redoxin YPTB_RS00715 PF00462 Glutaredoxin YPTB_RS00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS00720 PF03466 LysR substrate binding domain YPTB_RS00725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB_RS00725 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS00730 PF00440 Bacterial regulatory proteins, tetR family YPTB_RS00735 PF07226 Protein of unknown function (DUF1422) YPTB_RS00740 PF05958 tRNA (Uracil-5-)-methyltransferase YPTB_RS00750 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS00750 PF00593 TonB dependent receptor YPTB_RS00755 PF01177 Asp/Glu/Hydantoin racemase YPTB_RS00795 PF13407 Periplasmic binding protein domain YPTB_RS00800 PF00005 ABC transporter YPTB_RS00805 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS00810 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS00815 PF03466 LysR substrate binding domain YPTB_RS00815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS00820 PF04219 Protein of unknown function, DUF YPTB_RS00825 PF01078 Magnesium chelatase, subunit ChlI YPTB_RS00825 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPTB_RS00830 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB_RS00830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB_RS00830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB_RS00840 PF01063 Amino-transferase class IV YPTB_RS00845 PF00920 Dehydratase family YPTB_RS00850 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS00850 PF00585 C-terminal regulatory domain of Threonine dehydratase YPTB_RS00880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS00880 PF03466 LysR substrate binding domain YPTB_RS00885 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPTB_RS00885 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPTB_RS00905 PF03515 Colicin-like bacteriocin tRNase domain YPTB_RS00905 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 YPTB_RS00910 PF01320 Colicin immunity protein / pyocin immunity protein YPTB_RS00915 PF06958 S-type Pyocin YPTB_RS00920 PF01320 Colicin immunity protein / pyocin immunity protein YPTB_RS00925 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 YPTB_RS00925 PF03515 Colicin-like bacteriocin tRNase domain YPTB_RS00930 PF01320 Colicin immunity protein / pyocin immunity protein YPTB_RS00950 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS00950 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS00960 PF13953 PapC C-terminal domain YPTB_RS00960 PF13954 PapC N-terminal domain YPTB_RS00960 PF00577 Outer membrane usher protein YPTB_RS00965 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS00965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS00995 PF00580 UvrD/REP helicase N-terminal domain YPTB_RS00995 PF13361 UvrD-like helicase C-terminal domain YPTB_RS01000 PF02541 Ppx/GppA phosphatase family YPTB_RS01005 PF00270 DEAD/DEAH box helicase YPTB_RS01005 PF00271 Helicase conserved C-terminal domain YPTB_RS01010 PF00085 Thioredoxin YPTB_RS01015 PF07497 Rho termination factor, RNA-binding domain YPTB_RS01015 PF07498 Rho termination factor, N-terminal domain YPTB_RS01015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB_RS01020 PF00953 Glycosyl transferase family 4 YPTB_RS01025 PF02706 Chain length determinant protein YPTB_RS01030 PF02350 UDP-N-acetylglucosamine 2-epimerase YPTB_RS01035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPTB_RS01035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPTB_RS01035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPTB_RS01040 PF16363 GDP-mannose 4,6 dehydratase YPTB_RS01045 PF00483 Nucleotidyl transferase YPTB_RS01055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTB_RS01060 PF01943 Polysaccharide biosynthesis protein YPTB_RS01065 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPTB_RS01070 PF06899 WzyE protein, O-antigen assembly polymerase YPTB_RS01075 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPTB_RS01080 PF00324 Amino acid permease YPTB_RS01105 PF07719 Tetratricopeptide repeat YPTB_RS01105 PF07219 HemY protein N-terminus YPTB_RS01110 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPTB_RS01115 PF02602 Uroporphyrinogen-III synthase HemD YPTB_RS01120 PF03900 Porphobilinogen deaminase, C-terminal domain YPTB_RS01120 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPTB_RS01125 PF12633 Adenylate cyclase NT domain YPTB_RS01125 PF01295 Adenylate cyclase, class-I YPTB_RS01135 PF00872 Transposase, Mutator family YPTB_RS01145 PF01491 Frataxin-like domain YPTB_RS01150 PF13627 Prokaryotic lipoprotein-attachment site YPTB_RS01155 PF01678 Diaminopimelate epimerase YPTB_RS01160 PF04340 Protein of unknown function, DUF484 YPTB_RS01165 PF00589 Phage integrase family YPTB_RS01165 PF02899 Phage integrase, N-terminal SAM-like domain YPTB_RS01170 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS01175 PF00580 UvrD/REP helicase N-terminal domain YPTB_RS01175 PF13361 UvrD-like helicase C-terminal domain YPTB_RS01190 PF09370 Phosphoenolpyruvate hydrolase-like YPTB_RS01195 PF01544 CorA-like Mg2+ transporter protein YPTB_RS01200 PF00892 EamA-like transporter family YPTB_RS01205 PF03061 Thioesterase superfamily YPTB_RS01210 PF02253 Phospholipase A1 YPTB_RS01215 PF16124 RecQ zinc-binding YPTB_RS01215 PF00570 HRDC domain YPTB_RS01215 PF00271 Helicase conserved C-terminal domain YPTB_RS01215 PF00270 DEAD/DEAH box helicase YPTB_RS01215 PF09382 RQC domain YPTB_RS01220 PF01810 LysE type translocator YPTB_RS01225 PF01810 LysE type translocator YPTB_RS01230 PF12146 Serine aminopeptidase, S33 YPTB_RS01245 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB_RS01255 PF04324 BFD-like [2Fe-2S] binding domain YPTB_RS01255 PF01266 FAD dependent oxidoreductase YPTB_RS01260 PF00890 FAD binding domain YPTB_RS01265 PF02754 Cysteine-rich domain YPTB_RS01265 PF13183 4Fe-4S dicluster domain YPTB_RS01270 PF08786 DcrB YPTB_RS01275 PF02592 Putative vitamin uptake transporter YPTB_RS01280 PF01206 Sulfurtransferase TusA YPTB_RS01285 PF00403 Heavy-metal-associated domain YPTB_RS01290 PF07947 YhhN family YPTB_RS01305 PF06611 Protein of unknown function (DUF1145) YPTB_RS01320 PF00448 SRP54-type protein, GTPase domain YPTB_RS01320 PF02881 SRP54-type protein, helical bundle domain YPTB_RS01320 PF00448 SRP54-type protein, GTPase domain YPTB_RS01320 PF02881 SRP54-type protein, helical bundle domain YPTB_RS01325 PF00005 ABC transporter YPTB_RS01330 PF02687 FtsX-like permease family YPTB_RS01330 PF18075 FtsX extracellular domain YPTB_RS01335 PF04545 Sigma-70, region 4 YPTB_RS01335 PF00140 Sigma-70 factor, region 1.2 YPTB_RS01335 PF04542 Sigma-70 region 2 YPTB_RS01340 PF12568 Acetyltransferase (GNAT) domain, PanZ YPTB_RS01345 PF13458 Periplasmic binding protein YPTB_RS01350 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS01355 PF11862 Domain of unknown function (DUF3382) YPTB_RS01355 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS01360 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPTB_RS01360 PF00005 ABC transporter YPTB_RS01365 PF00005 ABC transporter YPTB_RS01405 PF13416 Bacterial extracellular solute-binding protein YPTB_RS01410 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS01415 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS01420 PF17912 MalK OB fold domain YPTB_RS01420 PF00005 ABC transporter YPTB_RS01425 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB_RS01430 PF03547 Membrane transport protein YPTB_RS01445 PF00892 EamA-like transporter family YPTB_RS01450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS01450 PF03466 LysR substrate binding domain YPTB_RS01455 PF08267 Cobalamin-independent synthase, N-terminal domain YPTB_RS01455 PF01717 Cobalamin-independent synthase, Catalytic domain YPTB_RS01460 PF01738 Dienelactone hydrolase family YPTB_RS01465 PF01048 Phosphorylase superfamily YPTB_RS01475 PF02554 Carbon starvation protein CstA YPTB_RS01475 PF13722 5TM C-terminal transporter carbon starvation CstA YPTB_RS01480 PF09335 SNARE associated Golgi protein YPTB_RS01485 PF02646 RmuC family YPTB_RS01490 PF01209 ubiE/COQ5 methyltransferase family YPTB_RS01495 PF02036 SCP-2 sterol transfer family YPTB_RS01500 PF03109 ABC1 family YPTB_RS01505 PF02416 mttA/Hcf106 family YPTB_RS01515 PF00902 Sec-independent protein translocase protein (TatC) YPTB_RS01520 PF01026 TatD related DNase YPTB_RS01525 PF00490 Delta-aminolevulinic acid dehydratase YPTB_RS01530 PF02357 Transcription termination factor nusG YPTB_RS01535 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPTB_RS01540 PF00175 Oxidoreductase NAD-binding domain YPTB_RS01540 PF00970 Oxidoreductase FAD-binding domain YPTB_RS01545 PF02803 Thiolase, C-terminal domain YPTB_RS01545 PF00108 Thiolase, N-terminal domain YPTB_RS01550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPTB_RS01550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPTB_RS01550 PF00378 Enoyl-CoA hydratase/isomerase YPTB_RS01555 PF00557 Metallopeptidase family M24 YPTB_RS01560 PF09186 Domain of unknown function (DUF1949) YPTB_RS01560 PF01205 Uncharacterized protein family UPF0029 YPTB_RS01565 PF02386 Cation transport protein YPTB_RS01570 PF12724 Flavodoxin domain YPTB_RS01605 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPTB_RS01605 PF01565 FAD binding domain YPTB_RS01610 PF03099 Biotin/lipoate A/B protein ligase family YPTB_RS01610 PF02237 Biotin protein ligase C terminal domain YPTB_RS01610 PF08279 HTH domain YPTB_RS01615 PF00485 Phosphoribulokinase / Uridine kinase family YPTB_RS01620 PF13673 Acetyltransferase (GNAT) domain YPTB_RS01645 PF00009 Elongation factor Tu GTP binding domain YPTB_RS01645 PF03144 Elongation factor Tu domain 2 YPTB_RS01645 PF03143 Elongation factor Tu C-terminal domain YPTB_RS01650 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPTB_RS01655 PF00467 KOW motif YPTB_RS01655 PF02357 Transcription termination factor nusG YPTB_RS01660 PF00298 Ribosomal protein L11, RNA binding domain YPTB_RS01660 PF03946 Ribosomal protein L11, N-terminal domain YPTB_RS01665 PF00687 Ribosomal protein L1p/L10e family YPTB_RS01670 PF00466 Ribosomal protein L10 YPTB_RS01675 PF00542 Ribosomal protein L7/L12 C-terminal domain YPTB_RS01675 PF16320 Ribosomal protein L7/L12 dimerisation domain YPTB_RS01680 PF04565 RNA polymerase Rpb2, domain 3 YPTB_RS01680 PF04560 RNA polymerase Rpb2, domain 7 YPTB_RS01680 PF04561 RNA polymerase Rpb2, domain 2 YPTB_RS01680 PF04563 RNA polymerase beta subunit YPTB_RS01680 PF10385 RNA polymerase beta subunit external 1 domain YPTB_RS01680 PF00562 RNA polymerase Rpb2, domain 6 YPTB_RS01685 PF04998 RNA polymerase Rpb1, domain 5 YPTB_RS01685 PF05000 RNA polymerase Rpb1, domain 4 YPTB_RS01685 PF04997 RNA polymerase Rpb1, domain 1 YPTB_RS01685 PF00623 RNA polymerase Rpb1, domain 2 YPTB_RS01685 PF04983 RNA polymerase Rpb1, domain 3 YPTB_RS01695 PF04055 Radical SAM superfamily YPTB_RS01695 PF06968 Biotin and Thiamin Synthesis associated domain YPTB_RS01700 PF05690 Thiazole biosynthesis protein ThiG YPTB_RS01710 PF00899 ThiF family YPTB_RS01715 PF02581 Thiamine monophosphate synthase YPTB_RS01720 PF13667 ThiC-associated domain YPTB_RS01720 PF01964 Radical SAM ThiC family YPTB_RS01730 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPTB_RS01735 PF00293 NUDIX domain YPTB_RS01735 PF09297 NADH pyrophosphatase zinc ribbon domain YPTB_RS01745 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPTB_RS01750 PF04493 Endonuclease V YPTB_RS01755 PF04222 Protein of unknown function (DUF416) YPTB_RS01760 PF00216 Bacterial DNA-binding protein YPTB_RS01765 PF07356 Protein of unknown function (DUF1481) YPTB_RS01770 PF02844 Phosphoribosylglycinamide synthetase, N domain YPTB_RS01770 PF02843 Phosphoribosylglycinamide synthetase, C domain YPTB_RS01770 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPTB_RS01775 PF01808 AICARFT/IMPCHase bienzyme YPTB_RS01775 PF02142 MGS-like domain YPTB_RS01805 PF01527 Transposase YPTB_RS01810 PF13276 HTH-like domain YPTB_RS01810 PF13683 Integrase core domain YPTB_RS01815 PF01695 IstB-like ATP binding protein YPTB_RS01820 PF00665 Integrase core domain YPTB_RS01820 PF02796 Helix-turn-helix domain of resolvase YPTB_RS01830 PF00474 Sodium:solute symporter family YPTB_RS01835 PF04341 Protein of unknown function, DUF485 YPTB_RS01840 PF13193 AMP-binding enzyme C-terminal domain YPTB_RS01840 PF16177 Acetyl-coenzyme A synthetase N-terminus YPTB_RS01840 PF00501 AMP-binding enzyme YPTB_RS01845 PF00375 Sodium:dicarboxylate symporter family YPTB_RS01850 PF00072 Response regulator receiver domain YPTB_RS01850 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS01855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS01855 PF00072 Response regulator receiver domain YPTB_RS01855 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS01855 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPTB_RS01855 PF00672 HAMP domain YPTB_RS01855 PF01627 Hpt domain YPTB_RS01860 PF03958 Bacterial type II/III secretion system short domain YPTB_RS01860 PF00263 Bacterial type II and III secretion system protein YPTB_RS01875 PF12833 Helix-turn-helix domain YPTB_RS01875 PF14525 AraC-binding-like domain YPTB_RS01895 PF01514 Secretory protein of YscJ/FliF family YPTB_RS01910 PF00771 FHIPEP family YPTB_RS01915 PF18269 T3SS EscN ATPase C-terminal domain YPTB_RS01915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB_RS01930 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTB_RS01935 PF00813 FliP family YPTB_RS01940 PF01313 Bacterial export proteins, family 3 YPTB_RS01945 PF01311 Bacterial export proteins, family 1 YPTB_RS01950 PF01312 FlhB HrpN YscU SpaS Family YPTB_RS01955 PF04143 Sulphur transport YPTB_RS01960 PF01206 Sulfurtransferase TusA YPTB_RS01965 PF03466 LysR substrate binding domain YPTB_RS01965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS01970 PF03222 Tryptophan/tyrosine permease family YPTB_RS01975 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTB_RS01980 PF00005 ABC transporter YPTB_RS01985 PF01032 FecCD transport family YPTB_RS01990 PF01497 Periplasmic binding protein YPTB_RS01995 PF05171 Haemin-degrading HemS.ChuX domain YPTB_RS02000 PF00593 TonB dependent receptor YPTB_RS02000 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS02010 PF13460 NAD(P)H-binding YPTB_RS02015 PF06228 Haem utilisation ChuX/HutX YPTB_RS02020 PF04055 Radical SAM superfamily YPTB_RS02040 PF15608 PELOTA RNA binding domain YPTB_RS02040 PF11202 Phosphoribosyl transferase (PRTase) YPTB_RS02060 PF02342 TerD domain YPTB_RS02065 PF02342 TerD domain YPTB_RS02070 PF05099 Tellurite resistance protein TerB YPTB_RS02075 PF03741 Integral membrane protein TerC family YPTB_RS02080 PF02342 TerD domain YPTB_RS02085 PF02342 TerD domain YPTB_RS02095 PF00577 Outer membrane usher protein YPTB_RS02095 PF13954 PapC N-terminal domain YPTB_RS02095 PF13953 PapC C-terminal domain YPTB_RS02100 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS02120 PF08031 Berberine and berberine like YPTB_RS02120 PF01565 FAD binding domain YPTB_RS02125 PF12951 Passenger-associated-transport-repeat YPTB_RS02130 PF04345 Chorismate lyase YPTB_RS02135 PF01040 UbiA prenyltransferase family YPTB_RS02140 PF01553 Acyltransferase YPTB_RS02145 PF01219 Prokaryotic diacylglycerol kinase YPTB_RS02150 PF01726 LexA DNA binding domain YPTB_RS02150 PF00717 Peptidase S24-like YPTB_RS02155 PF01475 Ferric uptake regulator family YPTB_RS02160 PF01207 Dihydrouridine synthase (Dus) YPTB_RS02165 PF09583 Phage shock protein G (Phageshock_PspG) YPTB_RS02170 PF00107 Zinc-binding dehydrogenase YPTB_RS02170 PF08240 Alcohol dehydrogenase GroES-like domain YPTB_RS02175 PF03796 DnaB-like helicase C terminal domain YPTB_RS02175 PF00772 DnaB-like helicase N terminal domain YPTB_RS02180 PF01168 Alanine racemase, N-terminal domain YPTB_RS02180 PF00842 Alanine racemase, C-terminal domain YPTB_RS02185 PF00155 Aminotransferase class I and II YPTB_RS02190 PF04237 YjbR YPTB_RS02195 PF00005 ABC transporter YPTB_RS02195 PF17755 UvrA DNA-binding domain YPTB_RS02195 PF17760 UvrA interaction domain YPTB_RS02200 PF00436 Single-strand binding protein family YPTB_RS02205 PF05336 L-rhamnose mutarotase YPTB_RS02210 PF00465 Iron-containing alcohol dehydrogenase YPTB_RS02215 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB_RS02220 PF06134 L-rhamnose isomerase (RhaA) YPTB_RS02225 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS02225 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB_RS02240 PF02311 AraC-like ligand binding domain YPTB_RS02240 PF12833 Helix-turn-helix domain YPTB_RS02245 PF02311 AraC-like ligand binding domain YPTB_RS02245 PF12833 Helix-turn-helix domain YPTB_RS02250 PF06379 L-rhamnose-proton symport protein (RhaT) YPTB_RS02285 PF13247 4Fe-4S dicluster domain YPTB_RS02285 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS02285 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPTB_RS02290 PF12800 4Fe-4S binding domain YPTB_RS02290 PF13247 4Fe-4S dicluster domain YPTB_RS02295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB_RS02295 PF00384 Molybdopterin oxidoreductase YPTB_RS02295 PF01568 Molydopterin dinucleotide binding domain YPTB_RS02300 PF11412 Disulphide bond corrector protein DsbC YPTB_RS02300 PF02683 Cytochrome C biogenesis protein transmembrane region YPTB_RS02305 PF03091 CutA1 divalent ion tolerance protein YPTB_RS02310 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPTB_RS02315 PF00206 Lyase YPTB_RS02315 PF10415 Fumarase C C-terminus YPTB_RS02320 PF04186 FxsA cytoplasmic membrane protein YPTB_RS02325 PF00166 Chaperonin 10 Kd subunit YPTB_RS02330 PF00118 TCP-1/cpn60 chaperonin family YPTB_RS02335 PF13698 Domain of unknown function (DUF4156) YPTB_RS02340 PF04055 Radical SAM superfamily YPTB_RS02345 PF08207 Elongation factor P (EF-P) KOW-like domain YPTB_RS02345 PF09285 Elongation factor P, C-terminal YPTB_RS02345 PF01132 Elongation factor P (EF-P) OB domain YPTB_RS02350 PF00893 Small Multidrug Resistance protein YPTB_RS02355 PF02313 Fumarate reductase subunit D YPTB_RS02360 PF02300 Fumarate reductase subunit C YPTB_RS02365 PF13085 2Fe-2S iron-sulfur cluster binding domain YPTB_RS02365 PF13183 4Fe-4S dicluster domain YPTB_RS02370 PF00890 FAD binding domain YPTB_RS02370 PF02910 Fumarate reductase flavoprotein C-term YPTB_RS02380 PF00152 tRNA synthetases class II (D, K and N) YPTB_RS02385 PF00924 Mechanosensitive ion channel YPTB_RS02385 PF12795 Mechanosensitive ion channel porin domain YPTB_RS02385 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPTB_RS02390 PF02666 Phosphatidylserine decarboxylase YPTB_RS02395 PF03193 RsgA GTPase YPTB_RS02405 PF00929 Exonuclease YPTB_RS02430 PF08331 Domain of unknown function (DUF1730) YPTB_RS02435 PF03853 YjeF-related protein N-terminus YPTB_RS02435 PF01256 Carbohydrate kinase YPTB_RS02440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPTB_RS02445 PF01520 N-acetylmuramoyl-L-alanine amidase YPTB_RS02450 PF01119 DNA mismatch repair protein, C-terminal domain YPTB_RS02450 PF08676 MutL C terminal dimerisation domain YPTB_RS02460 PF17209 Hfq protein YPTB_RS02465 PF13167 GTP-binding GTPase N-terminal YPTB_RS02465 PF01926 50S ribosome-binding GTPase YPTB_RS02465 PF16360 GTP-binding GTPase Middle Region YPTB_RS02470 PF12221 Bacterial membrane protein N terminal YPTB_RS02470 PF01145 SPFH domain / Band 7 family YPTB_RS02475 PF01145 SPFH domain / Band 7 family YPTB_RS02480 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPTB_RS02485 PF00709 Adenylosuccinate synthetase YPTB_RS02490 PF02082 Transcriptional regulator YPTB_RS02495 PF08461 Ribonuclease R winged-helix domain YPTB_RS02495 PF08206 Ribonuclease B OB domain YPTB_RS02495 PF00773 RNB domain YPTB_RS02495 PF00575 S1 RNA binding domain YPTB_RS02495 PF17876 Cold shock domain YPTB_RS02500 PF00588 SpoU rRNA Methylase family YPTB_RS02500 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPTB_RS02505 PF18158 Adaptive response protein AidB N-terminal domain YPTB_RS02505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTB_RS02505 PF02770 Acyl-CoA dehydrogenase, middle domain YPTB_RS02510 PF07338 Protein of unknown function (DUF1471) YPTB_RS02515 PF00326 Prolyl oligopeptidase family YPTB_RS02525 PF01250 Ribosomal protein S6 YPTB_RS02530 PF00436 Single-strand binding protein family YPTB_RS02535 PF01084 Ribosomal protein S18 YPTB_RS02540 PF01281 Ribosomal protein L9, N-terminal domain YPTB_RS02540 PF03948 Ribosomal protein L9, C-terminal domain YPTB_RS02550 PF04225 Opacity-associated protein A LysM-like domain YPTB_RS02550 PF08525 Opacity-associated protein A N-terminal motif YPTB_RS02555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPTB_RS02555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB_RS02560 PF01814 Hemerythrin HHE cation binding domain YPTB_RS02560 PF04405 Domain of Unknown function (DUF542) YPTB_RS02565 PF00149 Calcineurin-like phosphoesterase YPTB_RS02565 PF02872 5'-nucleotidase, C-terminal domain YPTB_RS02570 PF00459 Inositol monophosphatase family YPTB_RS02575 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPTB_RS02580 PF06526 Protein of unknown function (DUF1107) YPTB_RS02585 PF03471 Transporter associated domain YPTB_RS02585 PF00571 CBS domain YPTB_RS02585 PF01595 Cyclin M transmembrane N-terminal domain YPTB_RS02590 PF01625 Peptide methionine sulfoxide reductase YPTB_RS02595 PF17243 POTRA domain TamA domain 1 YPTB_RS02595 PF07244 Surface antigen variable number repeat YPTB_RS02595 PF01103 Surface antigen YPTB_RS02600 PF04357 TamB, inner membrane protein subunit of TAM complex YPTB_RS02605 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPTB_RS02610 PF00719 Inorganic pyrophosphatase YPTB_RS02615 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPTB_RS02620 PF01225 Mur ligase family, catalytic domain YPTB_RS02620 PF08245 Mur ligase middle domain YPTB_RS02620 PF02875 Mur ligase family, glutamate ligase domain YPTB_RS02635 PF01316 Arginine repressor, DNA binding domain YPTB_RS02635 PF02863 Arginine repressor, C-terminal domain YPTB_RS02640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPTB_RS02640 PF00056 lactate/malate dehydrogenase, NAD binding domain YPTB_RS02645 PF13693 Winged helix-turn-helix DNA-binding YPTB_RS02655 PF00348 Polyprenyl synthetase YPTB_RS02660 PF00829 Ribosomal prokaryotic L21 protein YPTB_RS02665 PF01016 Ribosomal L27 protein YPTB_RS02670 PF00892 EamA-like transporter family YPTB_RS02675 PF01018 GTP1/OBG YPTB_RS02675 PF01926 50S ribosome-binding GTPase YPTB_RS02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS02680 PF00672 HAMP domain YPTB_RS02680 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS02685 PF00072 Response regulator receiver domain YPTB_RS02685 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS02690 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPTB_RS02695 PF03449 Transcription elongation factor, N-terminal YPTB_RS02695 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTB_RS02700 PF01985 CRS1 / YhbY (CRM) domain YPTB_RS02705 PF01728 FtsJ-like methyltransferase YPTB_RS02710 PF01434 Peptidase family M41 YPTB_RS02710 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS02710 PF06480 FtsH Extracellular YPTB_RS02710 PF17862 AAA+ lid domain YPTB_RS02715 PF00809 Pterin binding enzyme YPTB_RS02720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTB_RS02720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTB_RS02720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTB_RS02720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTB_RS02725 PF03840 Preprotein translocase SecG subunit YPTB_RS02740 PF02576 RimP N-terminal domain YPTB_RS02740 PF17384 RimP C-terminal SH3 domain YPTB_RS02745 PF00575 S1 RNA binding domain YPTB_RS02745 PF08529 NusA N-terminal domain YPTB_RS02745 PF13184 NusA-like KH domain YPTB_RS02750 PF00009 Elongation factor Tu GTP binding domain YPTB_RS02750 PF03144 Elongation factor Tu domain 2 YPTB_RS02750 PF11987 Translation-initiation factor 2 YPTB_RS02750 PF04760 Translation initiation factor IF-2, N-terminal region YPTB_RS02750 PF08364 Bacterial translation initiation factor IF-2 associated region YPTB_RS02755 PF02033 Ribosome-binding factor A YPTB_RS02760 PF09157 Pseudouridine synthase II TruB, C-terminal YPTB_RS02760 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPTB_RS02760 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPTB_RS02765 PF00312 Ribosomal protein S15 YPTB_RS02770 PF01138 3' exoribonuclease family, domain 1 YPTB_RS02770 PF00013 KH domain YPTB_RS02770 PF03725 3' exoribonuclease family, domain 2 YPTB_RS02770 PF00575 S1 RNA binding domain YPTB_RS02770 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPTB_RS02775 PF07719 Tetratricopeptide repeat YPTB_RS02775 PF13181 Tetratricopeptide repeat YPTB_RS02780 PF00270 DEAD/DEAH box helicase YPTB_RS02780 PF12343 Cold shock protein DEAD box A YPTB_RS02780 PF00271 Helicase conserved C-terminal domain YPTB_RS02780 PF03880 DbpA RNA binding domain YPTB_RS02795 PF01381 Helix-turn-helix YPTB_RS02800 PF00296 Luciferase-like monooxygenase YPTB_RS02805 PF00529 HlyD membrane-fusion protein of T1SS YPTB_RS02805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS02810 PF00873 AcrB/AcrD/AcrF family YPTB_RS02815 PF02321 Outer membrane efflux protein YPTB_RS02815 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTB_RS02820 PF01136 Peptidase family U32 YPTB_RS02825 PF01136 Peptidase family U32 YPTB_RS02835 PF02036 SCP-2 sterol transfer family YPTB_RS02840 PF13508 Acetyltransferase (GNAT) domain YPTB_RS02850 PF01541 GIY-YIG catalytic domain YPTB_RS02865 PF13416 Bacterial extracellular solute-binding protein YPTB_RS02870 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS02875 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS02880 PF00005 ABC transporter YPTB_RS02880 PF17912 MalK OB fold domain YPTB_RS02880 PF03459 TOBE domain YPTB_RS02895 PF13460 NAD(P)H-binding YPTB_RS02900 PF12706 Beta-lactamase superfamily domain YPTB_RS02910 PF07969 Amidohydrolase family YPTB_RS02915 PF00005 ABC transporter YPTB_RS02920 PF00005 ABC transporter YPTB_RS02925 PF06007 Phosphonate metabolism protein PhnJ YPTB_RS02930 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPTB_RS02935 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPTB_RS02940 PF06754 Phosphonate metabolism protein PhnG YPTB_RS02945 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS02945 PF07702 UTRA domain YPTB_RS02955 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPTB_RS02955 PF03477 ATP cone domain YPTB_RS02960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB_RS02960 PF00005 ABC transporter YPTB_RS02965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB_RS02965 PF00005 ABC transporter YPTB_RS02970 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS02985 PF04074 YhcH/YjgK/YiaL YPTB_RS02990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPTB_RS02990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPTB_RS02995 PF06877 Regulator of ribonuclease activity B YPTB_RS03000 PF00583 Acetyltransferase (GNAT) family YPTB_RS03005 PF00133 tRNA synthetases class I (I, L, M and V) YPTB_RS03005 PF10458 Valyl tRNA synthetase tRNA binding arm YPTB_RS03005 PF08264 Anticodon-binding domain of tRNA YPTB_RS03010 PF04364 DNA polymerase III chi subunit, HolC YPTB_RS03015 PF02789 Cytosol aminopeptidase family, N-terminal domain YPTB_RS03015 PF00883 Cytosol aminopeptidase family, catalytic domain YPTB_RS03020 PF03739 Lipopolysaccharide export system permease LptF/LptG YPTB_RS03025 PF03739 Lipopolysaccharide export system permease LptF/LptG YPTB_RS03040 PF12008 Type I restriction and modification enzyme - subunit R C terminal YPTB_RS03040 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPTB_RS03040 PF18766 SWI2/SNF2 ATPase YPTB_RS03050 PF12161 HsdM N-terminal domain YPTB_RS03050 PF02384 N-6 DNA Methylase YPTB_RS03060 PF05987 Bacterial protein of unknown function (DUF898) YPTB_RS03070 PF12833 Helix-turn-helix domain YPTB_RS03075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB_RS03080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB_RS03090 PF00381 PTS HPr component phosphorylation site YPTB_RS03090 PF02896 PEP-utilising enzyme, TIM barrel domain YPTB_RS03090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB_RS03090 PF05524 PEP-utilising enzyme, N-terminal YPTB_RS03090 PF00391 PEP-utilising enzyme, mobile domain YPTB_RS03095 PF10696 Protein of unknown function (DUF2501) YPTB_RS03100 PF03992 Antibiotic biosynthesis monooxygenase YPTB_RS03105 PF01791 DeoC/LacD family aldolase YPTB_RS03110 PF13407 Periplasmic binding protein domain YPTB_RS03115 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS03120 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS03125 PF00005 ABC transporter YPTB_RS03135 PF00325 Bacterial regulatory proteins, crp family YPTB_RS03135 PF04198 Putative sugar-binding domain YPTB_RS03140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB_RS03140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS03145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPTB_RS03155 PF00266 Aminotransferase class-V YPTB_RS03160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPTB_RS03160 PF02770 Acyl-CoA dehydrogenase, middle domain YPTB_RS03160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTB_RS03175 PF00899 ThiF family YPTB_RS03175 PF00581 Rhodanese-like domain YPTB_RS03190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS03195 PF00873 AcrB/AcrD/AcrF family YPTB_RS03215 PF01095 Pectinesterase YPTB_RS03220 PF00990 Diguanylate cyclase, GGDEF domain YPTB_RS03225 PF07256 Protein of unknown function (DUF1435) YPTB_RS03245 PF08468 Methyltransferase small domain N-terminal YPTB_RS03245 PF05175 Methyltransferase small domain YPTB_RS03250 PF03603 DNA polymerase III psi subunit YPTB_RS03255 PF00583 Acetyltransferase (GNAT) family YPTB_RS03260 PF00009 Elongation factor Tu GTP binding domain YPTB_RS03260 PF03144 Elongation factor Tu domain 2 YPTB_RS03260 PF16658 Class II release factor RF3, C-terminal domain YPTB_RS03265 PF04972 BON domain YPTB_RS03270 PF07043 Protein of unknown function (DUF1328) YPTB_RS03275 PF01734 Patatin-like phospholipase YPTB_RS03280 PF01026 TatD related DNase YPTB_RS03285 PF01773 Na+ dependent nucleoside transporter N-terminus YPTB_RS03285 PF07662 Na+ dependent nucleoside transporter C-terminus YPTB_RS03285 PF07670 Nucleoside recognition YPTB_RS03290 PF01791 DeoC/LacD family aldolase YPTB_RS03295 PF00591 Glycosyl transferase family, a/b domain YPTB_RS03295 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPTB_RS03295 PF02885 Glycosyl transferase family, helical bundle domain YPTB_RS03300 PF01676 Metalloenzyme superfamily YPTB_RS03305 PF01048 Phosphorylase superfamily YPTB_RS03310 PF10144 Bacterial virulence factor haemolysin YPTB_RS03315 PF18429 Domain of unknown function (DUF5609) YPTB_RS03320 PF18073 Rubredoxin metal binding domain YPTB_RS03325 PF01381 Helix-turn-helix YPTB_RS03325 PF13521 AAA domain YPTB_RS03330 PF02661 Fic/DOC family YPTB_RS03335 PF00005 ABC transporter YPTB_RS03335 PF12848 ABC transporter YPTB_RS03340 PF00691 OmpA family YPTB_RS03345 PF00990 Diguanylate cyclase, GGDEF domain YPTB_RS03345 PF17152 Periplasmic sensor domain YPTB_RS03355 PF00689 Cation transporting ATPase, C-terminus YPTB_RS03355 PF00690 Cation transporter/ATPase, N-terminus YPTB_RS03360 PF01464 Transglycosylase SLT domain YPTB_RS03360 PF14718 Soluble lytic murein transglycosylase L domain YPTB_RS03365 PF01371 Trp repressor protein YPTB_RS03370 PF01931 Protein of unknown function DUF84 YPTB_RS03375 PF00300 Histidine phosphatase superfamily (branch 1) YPTB_RS03380 PF06445 GyrI-like small molecule binding domain YPTB_RS03380 PF12833 Helix-turn-helix domain YPTB_RS03385 PF05981 CreA protein YPTB_RS03390 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS03390 PF00072 Response regulator receiver domain YPTB_RS03395 PF13840 ACT domain YPTB_RS03395 PF00696 Amino acid kinase family YPTB_RS03395 PF01842 ACT domain YPTB_RS03395 PF03447 Homoserine dehydrogenase, NAD binding domain YPTB_RS03395 PF00742 Homoserine dehydrogenase YPTB_RS03400 PF00288 GHMP kinases N terminal domain YPTB_RS03400 PF08544 GHMP kinases C terminal YPTB_RS03405 PF14821 Threonine synthase N terminus YPTB_RS03405 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS03410 PF03883 Peroxide stress protein YaaA YPTB_RS03415 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPTB_RS03420 PF00994 Probable molybdopterin binding domain YPTB_RS03425 PF07690 Major Facilitator Superfamily YPTB_RS03435 PF01184 GPR1/FUN34/yaaH family YPTB_RS03440 PF00012 Hsp70 protein YPTB_RS03445 PF01556 DnaJ C terminal domain YPTB_RS03445 PF00684 DnaJ central domain YPTB_RS03445 PF00226 DnaJ domain YPTB_RS03450 PF06965 Na+/H+ antiporter 1 YPTB_RS03455 PF03466 LysR substrate binding domain YPTB_RS03455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS03460 PF01649 Ribosomal protein S20 YPTB_RS03470 PF06574 FAD synthetase YPTB_RS03470 PF01687 Riboflavin kinase YPTB_RS03475 PF08264 Anticodon-binding domain of tRNA YPTB_RS03475 PF06827 Zinc finger found in FPG and IleRS YPTB_RS03475 PF00133 tRNA synthetases class I (I, L, M and V) YPTB_RS03480 PF01252 Signal peptidase (SPase) II YPTB_RS03485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB_RS03490 PF02401 LytB protein YPTB_RS03495 PF01797 Transposase IS200 like YPTB_RS03500 PF01113 Dihydrodipicolinate reductase, N-terminus YPTB_RS03500 PF05173 Dihydrodipicolinate reductase, C-terminus YPTB_RS03505 PF00117 Glutamine amidotransferase class-I YPTB_RS03505 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPTB_RS03510 PF02142 MGS-like domain YPTB_RS03510 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPTB_RS03510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPTB_RS03515 PF01810 LysE type translocator YPTB_RS03520 PF06738 Putative threonine/serine exporter YPTB_RS03525 PF12821 Threonine/Serine exporter, ThrE YPTB_RS03530 PF00186 Dihydrofolate reductase YPTB_RS03545 PF00149 Calcineurin-like phosphoesterase YPTB_RS03550 PF04379 ApaG domain YPTB_RS03555 PF00398 Ribosomal RNA adenine dimethylase YPTB_RS03560 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPTB_RS03565 PF00639 PPIC-type PPIASE domain YPTB_RS03565 PF09312 SurA N-terminal domain YPTB_RS03570 PF03968 OstA-like protein YPTB_RS03570 PF04453 LPS transport system D YPTB_RS03575 PF05099 Tellurite resistance protein TerB YPTB_RS03575 PF00226 DnaJ domain YPTB_RS03580 PF00849 RNA pseudouridylate synthase YPTB_RS03595 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPTB_RS03600 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPTB_RS03615 PF05947 Type VI secretion system, TssF YPTB_RS03625 PF17871 AAA lid domain YPTB_RS03625 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS03625 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS03625 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS03630 PF06715 Gp5 C-terminal repeat (3 copies) YPTB_RS03630 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS03660 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPTB_RS03665 PF00691 OmpA family YPTB_RS03665 PF05736 OprF membrane domain YPTB_RS03670 PF14331 ImcF-related N-terminal domain YPTB_RS03670 PF06761 Intracellular multiplication and human macrophage-killing YPTB_RS03670 PF06744 Type VI secretion protein IcmF C-terminal YPTB_RS03680 PF00176 SNF2 family N-terminal domain YPTB_RS03680 PF00271 Helicase conserved C-terminal domain YPTB_RS03680 PF12137 RNA polymerase recycling family C-terminal YPTB_RS03680 PF18339 RapA N-terminal Tudor like domain 1 YPTB_RS03680 PF18337 RapA N-terminal Tudor like domain YPTB_RS03685 PF03104 DNA polymerase family B, exonuclease domain YPTB_RS03685 PF00136 DNA polymerase family B YPTB_RS03690 PF09335 SNARE associated Golgi protein YPTB_RS03695 PF00005 ABC transporter YPTB_RS03700 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS03715 PF04754 Putative transposase, YhgA-like YPTB_RS03725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB_RS03725 PF12793 Sugar transport-related sRNA regulator N-term YPTB_RS03735 PF07690 Major Facilitator Superfamily YPTB_RS03740 PF00694 Aconitase C-terminal domain YPTB_RS03745 PF00330 Aconitase family (aconitate hydratase) YPTB_RS03750 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTB_RS03755 PF08502 LeuA allosteric (dimerisation) domain YPTB_RS03755 PF00682 HMGL-like YPTB_RS03765 PF03466 LysR substrate binding domain YPTB_RS03765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS03775 PF00501 AMP-binding enzyme YPTB_RS03785 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB_RS03785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB_RS03785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB_RS03790 PF10369 Small subunit of acetolactate synthase YPTB_RS03800 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB_RS03800 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS03805 PF06610 L-alanine exporter YPTB_RS03810 PF02381 MraZ protein, putative antitoxin-like YPTB_RS03815 PF01795 MraW methylase family YPTB_RS03820 PF04999 Cell division protein FtsL YPTB_RS03825 PF00905 Penicillin binding protein transpeptidase domain YPTB_RS03825 PF03717 Penicillin-binding Protein dimerisation domain YPTB_RS03830 PF01225 Mur ligase family, catalytic domain YPTB_RS03830 PF08245 Mur ligase middle domain YPTB_RS03830 PF02875 Mur ligase family, glutamate ligase domain YPTB_RS03835 PF01225 Mur ligase family, catalytic domain YPTB_RS03835 PF02875 Mur ligase family, glutamate ligase domain YPTB_RS03835 PF08245 Mur ligase middle domain YPTB_RS03840 PF00953 Glycosyl transferase family 4 YPTB_RS03840 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPTB_RS03845 PF08245 Mur ligase middle domain YPTB_RS03845 PF02875 Mur ligase family, glutamate ligase domain YPTB_RS03850 PF01098 Cell cycle protein YPTB_RS03855 PF04101 Glycosyltransferase family 28 C-terminal domain YPTB_RS03855 PF03033 Glycosyltransferase family 28 N-terminal domain YPTB_RS03860 PF01225 Mur ligase family, catalytic domain YPTB_RS03860 PF02875 Mur ligase family, glutamate ligase domain YPTB_RS03860 PF08245 Mur ligase middle domain YPTB_RS03865 PF07478 D-ala D-ala ligase C-terminus YPTB_RS03865 PF01820 D-ala D-ala ligase N-terminus YPTB_RS03870 PF08478 POTRA domain, FtsQ-type YPTB_RS03870 PF03799 Cell division protein FtsQ YPTB_RS03875 PF02491 SHS2 domain inserted in FTSA YPTB_RS03880 PF00091 Tubulin/FtsZ family, GTPase domain YPTB_RS03880 PF12327 FtsZ family, C-terminal domain YPTB_RS03885 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPTB_RS03895 PF06558 Secretion monitor precursor protein (SecM) YPTB_RS03900 PF07516 SecA Wing and Scaffold domain YPTB_RS03900 PF01043 SecA preprotein cross-linking domain YPTB_RS03900 PF07517 SecA DEAD-like domain YPTB_RS03900 PF02810 SEC-C motif YPTB_RS03905 PF00293 NUDIX domain YPTB_RS03915 PF01797 Transposase IS200 like YPTB_RS03920 PF03884 DNA gyrase inhibitor YacG YPTB_RS03925 PF07072 Cell division protein YPTB_RS03930 PF01121 Dephospho-CoA kinase YPTB_RS03940 PF00478 IMP dehydrogenase / GMP reductase domain YPTB_RS03945 PF00872 Transposase, Mutator family YPTB_RS03950 PF00482 Type II secretion system (T2SS), protein F YPTB_RS03955 PF00437 Type II/IV secretion system protein YPTB_RS03955 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPTB_RS03960 PF07963 Prokaryotic N-terminal methylation motif YPTB_RS03965 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPTB_RS03965 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPTB_RS03970 PF01510 N-acetylmuramoyl-L-alanine amidase YPTB_RS03975 PF17113 Regulatory signalling modulator protein AmpE YPTB_RS03980 PF00324 Amino acid permease YPTB_RS03985 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS03985 PF07729 FCD domain YPTB_RS03990 PF17831 Pyruvate dehydrogenase E1 component middle domain YPTB_RS03990 PF00456 Transketolase, thiamine diphosphate binding domain YPTB_RS03995 PF02817 e3 binding domain YPTB_RS03995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPTB_RS03995 PF00364 Biotin-requiring enzyme YPTB_RS04000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB_RS04000 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS04005 PF11791 Aconitate B N-terminal domain YPTB_RS04005 PF06434 Aconitate hydratase 2 N-terminus YPTB_RS04005 PF00330 Aconitase family (aconitate hydratase) YPTB_RS04010 PF06062 Uncharacterised protein family (UPF0231) YPTB_RS04015 PF00892 EamA-like transporter family YPTB_RS04020 PF02675 S-adenosylmethionine decarboxylase YPTB_RS04025 PF17284 Spermidine synthase tetramerisation domain YPTB_RS04030 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPTB_RS04035 PF07731 Multicopper oxidase YPTB_RS04035 PF00394 Multicopper oxidase YPTB_RS04035 PF07732 Multicopper oxidase YPTB_RS04035 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPTB_RS04040 PF00156 Phosphoribosyl transferase domain YPTB_RS04045 PF00484 Carbonic anhydrase YPTB_RS04050 PF00005 ABC transporter YPTB_RS04055 PF01061 ABC-2 type transporter YPTB_RS04060 PF01522 Polysaccharide deacetylase YPTB_RS04065 PF02261 Aspartate decarboxylase YPTB_RS04070 PF02569 Pantoate-beta-alanine ligase YPTB_RS04075 PF02548 Ketopantoate hydroxymethyltransferase YPTB_RS04080 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPTB_RS04085 PF12627 Probable RNA and SrmB- binding site of polymerase A YPTB_RS04085 PF01743 Poly A polymerase head domain YPTB_RS04085 PF12626 Polymerase A arginine-rich C-terminus YPTB_RS04090 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTB_RS04095 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPTB_RS04100 PF03749 Sugar fermentation stimulation protein RE domain YPTB_RS04100 PF17746 SfsA N-terminal OB domain YPTB_RS04105 PF02834 LigT like Phosphoesterase YPTB_RS04110 PF00271 Helicase conserved C-terminal domain YPTB_RS04110 PF08482 ATP-dependent helicase C-terminal YPTB_RS04110 PF00270 DEAD/DEAH box helicase YPTB_RS04110 PF04408 Helicase associated domain (HA2) YPTB_RS04115 PF00905 Penicillin binding protein transpeptidase domain YPTB_RS04115 PF14814 Bifunctional transglycosylase second domain YPTB_RS04115 PF00912 Transglycosylase YPTB_RS04115 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPTB_RS04120 PF00005 ABC transporter YPTB_RS04125 PF01497 Periplasmic binding protein YPTB_RS04130 PF01032 FecCD transport family YPTB_RS04135 PF00202 Aminotransferase class-III YPTB_RS04140 PF00654 Voltage gated chloride channel YPTB_RS04145 PF01521 Iron-sulphur cluster biosynthesis YPTB_RS04150 PF03458 UPF0126 domain YPTB_RS04155 PF01497 Periplasmic binding protein YPTB_RS04160 PF01048 Phosphorylase superfamily YPTB_RS04165 PF13286 Phosphohydrolase-associated domain YPTB_RS04165 PF01966 HD domain YPTB_RS04170 PF00595 PDZ domain YPTB_RS04175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPTB_RS04175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS04175 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS04175 PF01627 Hpt domain YPTB_RS04175 PF00672 HAMP domain YPTB_RS04175 PF00072 Response regulator receiver domain YPTB_RS04180 PF02824 TGS domain YPTB_RS04180 PF04607 Region found in RelA / SpoT proteins YPTB_RS04180 PF13291 ACT domain YPTB_RS04190 PF03819 MazG nucleotide pyrophosphohydrolase domain YPTB_RS04195 PF00117 Glutamine amidotransferase class-I YPTB_RS04195 PF06418 CTP synthase N-terminus YPTB_RS04200 PF03952 Enolase, N-terminal domain YPTB_RS04200 PF00113 Enolase, C-terminal TIM barrel domain YPTB_RS04205 PF00080 Copper/zinc superoxide dismutase (SODC) YPTB_RS04210 PF04055 Radical SAM superfamily YPTB_RS04215 PF01242 6-pyruvoyl tetrahydropterin synthase YPTB_RS04220 PF00667 FAD binding domain YPTB_RS04220 PF00258 Flavodoxin YPTB_RS04220 PF00175 Oxidoreductase NAD-binding domain YPTB_RS04225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPTB_RS04225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPTB_RS04230 PF01507 Phosphoadenosine phosphosulfate reductase family YPTB_RS04250 PF10414 Sirohaem synthase dimerisation region YPTB_RS04250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTB_RS04250 PF14824 Sirohaem biosynthesis protein central YPTB_RS04255 PF01507 Phosphoadenosine phosphosulfate reductase family YPTB_RS04260 PF00009 Elongation factor Tu GTP binding domain YPTB_RS04270 PF12084 Protein of unknown function (DUF3561) YPTB_RS04275 PF04977 Septum formation initiator YPTB_RS04280 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPTB_RS04285 PF02542 YgbB family YPTB_RS04290 PF01142 tRNA pseudouridine synthase D (TruD) YPTB_RS04295 PF01975 Survival protein SurE YPTB_RS04305 PF01476 LysM domain YPTB_RS04305 PF01551 Peptidase family M23 YPTB_RS04310 PF04542 Sigma-70 region 2 YPTB_RS04310 PF00140 Sigma-70 factor, region 1.2 YPTB_RS04310 PF04545 Sigma-70, region 4 YPTB_RS04310 PF04539 Sigma-70 region 3 YPTB_RS04315 PF00872 Transposase, Mutator family YPTB_RS04320 PF05190 MutS family domain IV YPTB_RS04320 PF05192 MutS domain III YPTB_RS04320 PF00488 MutS domain V YPTB_RS04320 PF05188 MutS domain II YPTB_RS04320 PF01624 MutS domain I YPTB_RS04330 PF02502 Ribose/Galactose Isomerase YPTB_RS04335 PF00107 Zinc-binding dehydrogenase YPTB_RS04335 PF08240 Alcohol dehydrogenase GroES-like domain YPTB_RS04345 PF02733 Dak1 domain YPTB_RS04350 PF02734 DAK2 domain YPTB_RS04355 PF13936 Helix-turn-helix domain YPTB_RS04355 PF04198 Putative sugar-binding domain YPTB_RS04360 PF02040 Arsenical pump membrane protein YPTB_RS04365 PF01022 Bacterial regulatory protein, arsR family YPTB_RS04380 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS04385 PF03150 Di-haem cytochrome c peroxidase YPTB_RS04385 PF00034 Cytochrome c YPTB_RS04385 PF14376 Haem-binding domain YPTB_RS04395 PF00593 TonB dependent receptor YPTB_RS04395 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS04410 PF00557 Metallopeptidase family M24 YPTB_RS04420 PF05683 Fumarase C-terminus YPTB_RS04420 PF05681 Fumarate hydratase (Fumerase) YPTB_RS04425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB_RS04425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS04430 PF01261 Xylose isomerase-like TIM barrel YPTB_RS04435 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS04440 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS04445 PF00005 ABC transporter YPTB_RS04455 PF08220 DeoR-like helix-turn-helix domain YPTB_RS04455 PF00455 DeoR C terminal sensor domain YPTB_RS04460 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB_RS04465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB_RS04465 PF00384 Molybdopterin oxidoreductase YPTB_RS04465 PF01568 Molydopterin dinucleotide binding domain YPTB_RS04470 PF13247 4Fe-4S dicluster domain YPTB_RS04470 PF12800 4Fe-4S binding domain YPTB_RS04475 PF04976 DMSO reductase anchor subunit (DmsC) YPTB_RS04480 PF02613 Nitrate reductase delta subunit YPTB_RS04485 PF01292 Prokaryotic cytochrome b561 YPTB_RS04490 PF07361 Cytochrome b562 YPTB_RS04495 PF00141 Peroxidase YPTB_RS04500 PF13407 Periplasmic binding protein domain YPTB_RS04510 PF00005 ABC transporter YPTB_RS04515 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS04520 PF00456 Transketolase, thiamine diphosphate binding domain YPTB_RS04525 PF02780 Transketolase, C-terminal domain YPTB_RS04525 PF02779 Transketolase, pyrimidine binding domain YPTB_RS04530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS04530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB_RS04545 PF07690 Major Facilitator Superfamily YPTB_RS04550 PF02464 Competence-damaged protein YPTB_RS04555 PF00154 recA bacterial DNA recombination protein YPTB_RS04560 PF02631 RecX family YPTB_RS04565 PF02272 DHHA1 domain YPTB_RS04565 PF01411 tRNA synthetases class II (A) YPTB_RS04565 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPTB_RS04570 PF02599 Global regulator protein family YPTB_RS04595 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS04600 PF09335 SNARE associated Golgi protein YPTB_RS04605 PF04262 Glutamate-cysteine ligase YPTB_RS04610 PF02664 S-Ribosylhomocysteinase (LuxS) YPTB_RS04615 PF03471 Transporter associated domain YPTB_RS04615 PF01595 Cyclin M transmembrane N-terminal domain YPTB_RS04615 PF00571 CBS domain YPTB_RS04620 PF01578 Cytochrome C assembly protein YPTB_RS04625 PF02881 SRP54-type protein, helical bundle domain YPTB_RS04625 PF02978 Signal peptide binding domain YPTB_RS04625 PF00448 SRP54-type protein, GTPase domain YPTB_RS04630 PF00886 Ribosomal protein S16 YPTB_RS04635 PF05239 PRC-barrel domain YPTB_RS04635 PF01782 RimM N-terminal domain YPTB_RS04640 PF01746 tRNA (Guanine-1)-methyltransferase YPTB_RS04645 PF01245 Ribosomal protein L19 YPTB_RS04650 PF04338 Protein of unknown function, DUF481 YPTB_RS04655 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPTB_RS04660 PF00072 Response regulator receiver domain YPTB_RS04660 PF04397 LytTr DNA-binding domain YPTB_RS04665 PF00793 DAHP synthetase I family YPTB_RS04670 PF01817 Chorismate mutase type II YPTB_RS04670 PF02153 Prephenate dehydrogenase YPTB_RS04675 PF00800 Prephenate dehydratase YPTB_RS04675 PF01817 Chorismate mutase type II YPTB_RS04680 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPTB_RS04685 PF13525 Outer membrane lipoprotein YPTB_RS04690 PF01479 S4 domain YPTB_RS04690 PF00849 RNA pseudouridylate synthase YPTB_RS04695 PF02578 Multi-copper polyphenol oxidoreductase laccase YPTB_RS04700 PF02861 Clp amino terminal domain, pathogenicity island component YPTB_RS04700 PF17871 AAA lid domain YPTB_RS04700 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS04700 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS04700 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS04740 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPTB_RS04745 PF13091 PLD-like domain YPTB_RS04750 PF13607 Succinyl-CoA ligase like flavodoxin domain YPTB_RS04750 PF00583 Acetyltransferase (GNAT) family YPTB_RS04750 PF13380 CoA binding domain YPTB_RS04755 PF03942 DTW domain YPTB_RS04760 PF00085 Thioredoxin YPTB_RS04765 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPTB_RS04765 PF00588 SpoU rRNA Methylase family YPTB_RS04770 PF07690 Major Facilitator Superfamily YPTB_RS04775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS04775 PF00529 HlyD membrane-fusion protein of T1SS YPTB_RS04780 PF01047 MarR family YPTB_RS04785 PF05437 Branched-chain amino acid transport protein (AzlD) YPTB_RS04790 PF03591 AzlC protein YPTB_RS04795 PF07690 Major Facilitator Superfamily YPTB_RS04805 PF01425 Amidase YPTB_RS04825 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS04830 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS04835 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS04840 PF00005 ABC transporter YPTB_RS04845 PF00266 Aminotransferase class-V YPTB_RS04850 PF01546 Peptidase family M20/M25/M40 YPTB_RS04850 PF07687 Peptidase dimerisation domain YPTB_RS04855 PF00795 Carbon-nitrogen hydrolase YPTB_RS04860 PF00155 Aminotransferase class I and II YPTB_RS04865 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB_RS04875 PF03079 ARD/ARD' family YPTB_RS04880 PF01008 Initiation factor 2 subunit family YPTB_RS04885 PF01636 Phosphotransferase enzyme family YPTB_RS04890 PF08479 POTRA domain, ShlB-type YPTB_RS04890 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB_RS04895 PF05860 haemagglutination activity domain YPTB_RS04900 PF18254 HMW1 domain 2 YPTB_RS04900 PF18071 HMW1C N-terminal YPTB_RS04910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPTB_RS04910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPTB_RS04910 PF09317 Domain of unknown function (DUF1974) YPTB_RS04915 PF13580 SIS domain YPTB_RS04920 PF13230 Glutamine amidotransferases class-II YPTB_RS04925 PF03734 L,D-transpeptidase catalytic domain YPTB_RS04930 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPTB_RS04930 PF11973 NQRA C-terminal domain YPTB_RS04935 PF03116 NQR2, RnfD, RnfE family YPTB_RS04940 PF04205 FMN-binding domain YPTB_RS04945 PF02508 Rnf-Nqr subunit, membrane protein YPTB_RS04950 PF02508 Rnf-Nqr subunit, membrane protein YPTB_RS04955 PF00175 Oxidoreductase NAD-binding domain YPTB_RS04955 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB_RS04955 PF00970 Oxidoreductase FAD-binding domain YPTB_RS04960 PF02424 ApbE family YPTB_RS04970 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB_RS04975 PF11799 impB/mucB/samB family C-terminal domain YPTB_RS04975 PF00817 impB/mucB/samB family YPTB_RS04975 PF11798 IMS family HHH motif YPTB_RS04980 PF07687 Peptidase dimerisation domain YPTB_RS04980 PF01546 Peptidase family M20/M25/M40 YPTB_RS05005 PF00156 Phosphoribosyl transferase domain YPTB_RS05010 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) YPTB_RS05015 PF07417 Sigma factor-binding transcriptional regulator Crl YPTB_RS05020 PF00696 Amino acid kinase family YPTB_RS05020 PF01472 PUA domain YPTB_RS05025 PF00171 Aldehyde dehydrogenase family YPTB_RS05030 PF07317 Flagellar regulator YcgR YPTB_RS05030 PF07238 PilZ domain YPTB_RS05040 PF08241 Methyltransferase domain YPTB_RS05055 PF01202 Shikimate kinase YPTB_RS05065 PF06865 Pyrimidine/purine nucleoside phosphorylase YPTB_RS05070 PF04381 Putative exonuclease, RdgC YPTB_RS05075 PF00480 ROK family YPTB_RS05080 PF13476 AAA domain YPTB_RS05085 PF00149 Calcineurin-like phosphoesterase YPTB_RS05085 PF12320 Type 5 capsule protein repressor C-terminal domain YPTB_RS05095 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS05095 PF00072 Response regulator receiver domain YPTB_RS05100 PF11808 Phosphate regulon sensor protein PhoR YPTB_RS05100 PF00989 PAS fold YPTB_RS05100 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS05100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS05105 PF12849 PBP superfamily domain YPTB_RS05110 PF05525 Branched-chain amino acid transport protein YPTB_RS05115 PF00324 Amino acid permease YPTB_RS05120 PF00128 Alpha amylase, catalytic domain YPTB_RS05120 PF02903 Alpha amylase, N-terminal ig-like domain YPTB_RS05140 PF00578 AhpC/TSA family YPTB_RS05140 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPTB_RS05145 PF04336 Acyl carrier protein phosphodiesterase YPTB_RS05150 PF02547 Queuosine biosynthesis protein YPTB_RS05155 PF01702 Queuine tRNA-ribosyltransferase YPTB_RS05160 PF02699 Preprotein translocase subunit YPTB_RS05165 PF13721 SecD export protein N-terminal TM region YPTB_RS05165 PF07549 SecD/SecF GG Motif YPTB_RS05165 PF02355 Protein export membrane protein YPTB_RS05170 PF02355 Protein export membrane protein YPTB_RS05170 PF07549 SecD/SecF GG Motif YPTB_RS05185 PF03477 ATP cone domain YPTB_RS05190 PF01872 RibD C-terminal domain YPTB_RS05190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPTB_RS05195 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPTB_RS05200 PF01029 NusB family YPTB_RS05205 PF02769 AIR synthase related protein, C-terminal domain YPTB_RS05205 PF00586 AIR synthase related protein, N-terminal domain YPTB_RS05210 PF04608 Phosphatidylglycerophosphatase A YPTB_RS05215 PF02779 Transketolase, pyrimidine binding domain YPTB_RS05215 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPTB_RS05215 PF02780 Transketolase, C-terminal domain YPTB_RS05220 PF00348 Polyprenyl synthetase YPTB_RS05225 PF02609 Exonuclease VII small subunit YPTB_RS05235 PF02568 Thiamine biosynthesis protein (ThiI) YPTB_RS05235 PF02926 THUMP domain YPTB_RS05240 PF01965 DJ-1/PfpI family YPTB_RS05245 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPTB_RS05245 PF02558 Ketopantoate reductase PanE/ApbA YPTB_RS05250 PF04461 Protein of unknown function (DUF520) YPTB_RS05255 PF07690 Major Facilitator Superfamily YPTB_RS05260 PF01040 UbiA prenyltransferase family YPTB_RS05265 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPTB_RS05270 PF00510 Cytochrome c oxidase subunit III YPTB_RS05275 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPTB_RS05280 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPTB_RS05280 PF06481 COX Aromatic Rich Motif YPTB_RS05285 PF03502 Nucleoside-specific channel-forming protein, Tsx YPTB_RS05290 PF07690 Major Facilitator Superfamily YPTB_RS05295 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTB_RS05295 PF03923 Uncharacterized lipoprotein YPTB_RS05300 PF01722 BolA-like protein YPTB_RS05310 PF05698 Bacterial trigger factor protein (TF) C-terminus YPTB_RS05310 PF05697 Bacterial trigger factor protein (TF) YPTB_RS05310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB_RS05315 PF00574 Clp protease YPTB_RS05320 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS05320 PF06689 ClpX C4-type zinc finger YPTB_RS05320 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS05325 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPTB_RS05325 PF05362 Lon protease (S16) C-terminal proteolytic domain YPTB_RS05325 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS05330 PF00216 Bacterial DNA-binding protein YPTB_RS05335 PF13145 PPIC-type PPIASE domain YPTB_RS05350 PF06508 Queuosine biosynthesis protein QueC YPTB_RS05355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB_RS05355 PF12793 Sugar transport-related sRNA regulator N-term YPTB_RS05365 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS05370 PF13404 AsnC-type helix-turn-helix domain YPTB_RS05370 PF01037 Lrp/AsnC ligand binding domain YPTB_RS05375 PF00664 ABC transporter transmembrane region YPTB_RS05375 PF00005 ABC transporter YPTB_RS05380 PF00664 ABC transporter transmembrane region YPTB_RS05380 PF00005 ABC transporter YPTB_RS05385 PF00543 Nitrogen regulatory protein P-II YPTB_RS05390 PF00909 Ammonium Transporter Family YPTB_RS05400 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPTB_RS05405 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTB_RS05410 PF05321 Haemolysin expression modulating protein YPTB_RS05415 PF10757 Biofilm formation regulator YbaJ YPTB_RS05425 PF00444 Ribosomal protein L36 YPTB_RS05430 PF01197 Ribosomal protein L31 YPTB_RS05435 PF00873 AcrB/AcrD/AcrF family YPTB_RS05440 PF00529 HlyD membrane-fusion protein of T1SS YPTB_RS05440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS05445 PF00440 Bacterial regulatory proteins, tetR family YPTB_RS05445 PF08361 MAATS-type transcriptional repressor, C-terminal region YPTB_RS05450 PF02635 DsrE/DsrF-like family YPTB_RS05455 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPTB_RS05455 PF00924 Mechanosensitive ion channel YPTB_RS05455 PF12795 Mechanosensitive ion channel porin domain YPTB_RS05460 PF10689 Protein of unknown function (DUF2496) YPTB_RS05475 PF00156 Phosphoribosyl transferase domain YPTB_RS05480 PF12169 DNA polymerase III subunits gamma and tau domain III YPTB_RS05480 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPTB_RS05480 PF12170 DNA polymerase III tau subunit V interacting with alpha YPTB_RS05485 PF02575 YbaB/EbfC DNA-binding family YPTB_RS05490 PF02132 RecR protein YPTB_RS05490 PF13662 Toprim domain YPTB_RS05495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS05495 PF00183 Hsp90 protein YPTB_RS05500 PF05191 Adenylate kinase, active site lid YPTB_RS05505 PF00762 Ferrochelatase YPTB_RS05510 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB_RS05510 PF00175 Oxidoreductase NAD-binding domain YPTB_RS05510 PF00970 Oxidoreductase FAD-binding domain YPTB_RS05515 PF00483 Nucleotidyl transferase YPTB_RS05520 PF16363 GDP-mannose 4,6 dehydratase YPTB_RS05525 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTB_RS05530 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS05565 PF13439 Glycosyltransferase Family 4 YPTB_RS05565 PF00534 Glycosyl transferases group 1 YPTB_RS05570 PF16363 GDP-mannose 4,6 dehydratase YPTB_RS05575 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS05580 PF01050 Mannose-6-phosphate isomerase YPTB_RS05580 PF00483 Nucleotidyl transferase YPTB_RS05585 PF00535 Glycosyl transferase family 2 YPTB_RS05590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTB_RS05590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTB_RS05590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTB_RS05590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTB_RS05595 PF02706 Chain length determinant protein YPTB_RS05600 PF00294 pfkB family carbohydrate kinase YPTB_RS05605 PF02254 TrkA-N domain YPTB_RS05605 PF00999 Sodium/hydrogen exchanger family YPTB_RS05610 PF07690 Major Facilitator Superfamily YPTB_RS05630 PF04073 Aminoacyl-tRNA editing domain YPTB_RS05635 PF01963 TraB family YPTB_RS05640 PF00403 Heavy-metal-associated domain YPTB_RS05645 PF13411 MerR HTH family regulatory protein YPTB_RS05650 PF01957 NfeD-like C-terminal, partner-binding YPTB_RS05655 PF16200 C-terminal region of band_7 YPTB_RS05655 PF01145 SPFH domain / Band 7 family YPTB_RS05660 PF00085 Thioredoxin YPTB_RS05665 PF00106 short chain dehydrogenase YPTB_RS05670 PF13472 GDSL-like Lipase/Acylhydrolase family YPTB_RS05675 PF00005 ABC transporter YPTB_RS05685 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPTB_RS05685 PF02222 ATP-grasp domain YPTB_RS05690 PF00731 AIR carboxylase YPTB_RS05695 PF00149 Calcineurin-like phosphoesterase YPTB_RS05700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPTB_RS05705 PF01406 tRNA synthetases class I (C) catalytic domain YPTB_RS05705 PF09190 DALR domain YPTB_RS05715 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPTB_RS05715 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPTB_RS05755 PF01066 CDP-alcohol phosphatidyltransferase YPTB_RS05765 PF01553 Acyltransferase YPTB_RS05770 PF12146 Serine aminopeptidase, S33 YPTB_RS05770 PF12147 Putative methyltransferase YPTB_RS05775 PF00782 Dual specificity phosphatase, catalytic domain YPTB_RS05790 PF03466 LysR substrate binding domain YPTB_RS05790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS05795 PF00248 Aldo/keto reductase family YPTB_RS05800 PF00248 Aldo/keto reductase family YPTB_RS05820 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPTB_RS05820 PF00933 Glycosyl hydrolase family 3 N terminal domain YPTB_RS05820 PF14310 Fibronectin type III-like domain YPTB_RS05835 PF01479 S4 domain YPTB_RS05835 PF00849 RNA pseudouridylate synthase YPTB_RS05840 PF08007 Cupin superfamily protein YPTB_RS05850 PF03212 Pertactin YPTB_RS05850 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS05850 PF03797 Autotransporter beta-domain YPTB_RS05850 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB_RS05865 PF05638 Type VI secretion system effector, Hcp YPTB_RS05885 PF13693 Winged helix-turn-helix DNA-binding YPTB_RS05890 PF06832 Penicillin-Binding Protein C-terminus Family YPTB_RS05890 PF00912 Transglycosylase YPTB_RS05890 PF00905 Penicillin binding protein transpeptidase domain YPTB_RS05895 PF00207 Alpha-2-macroglobulin family YPTB_RS05895 PF07703 Alpha-2-macroglobulin bait region domain YPTB_RS05895 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPTB_RS05895 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPTB_RS05895 PF01835 MG2 domain YPTB_RS05895 PF17962 Bacterial macroglobulin domain 6 YPTB_RS05895 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPTB_RS05905 PF00171 Aldehyde dehydrogenase family YPTB_RS05910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB_RS05910 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB_RS05910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB_RS05915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB_RS05915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB_RS05920 PF13407 Periplasmic binding protein domain YPTB_RS05925 PF00005 ABC transporter YPTB_RS05930 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS05935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB_RS05935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB_RS05940 PF00294 pfkB family carbohydrate kinase YPTB_RS05945 PF01261 Xylose isomerase-like TIM barrel YPTB_RS05950 PF04962 KduI/IolB family YPTB_RS05960 PF00664 ABC transporter transmembrane region YPTB_RS05960 PF00005 ABC transporter YPTB_RS05985 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS05990 PF00313 'Cold-shock' DNA-binding domain YPTB_RS05995 PF00313 'Cold-shock' DNA-binding domain YPTB_RS06000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTB_RS06010 PF02416 mttA/Hcf106 family YPTB_RS06015 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPTB_RS06015 PF04055 Radical SAM superfamily YPTB_RS06020 PF03099 Biotin/lipoate A/B protein ligase family YPTB_RS06025 PF04359 Protein of unknown function (DUF493) YPTB_RS06030 PF00768 D-alanyl-D-alanine carboxypeptidase YPTB_RS06030 PF07943 Penicillin-binding protein 5, C-terminal domain YPTB_RS06035 PF03330 Lytic transglycolase YPTB_RS06035 PF05036 Sporulation related domain YPTB_RS06040 PF01098 Cell cycle protein YPTB_RS06045 PF03717 Penicillin-binding Protein dimerisation domain YPTB_RS06045 PF00905 Penicillin binding protein transpeptidase domain YPTB_RS06050 PF02590 Predicted SPOUT methyltransferase YPTB_RS06060 PF01467 Cytidylyltransferase-like YPTB_RS06065 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPTB_RS06065 PF06144 DNA polymerase III, delta subunit YPTB_RS06070 PF04390 Lipopolysaccharide-assembly YPTB_RS06075 PF08264 Anticodon-binding domain of tRNA YPTB_RS06075 PF00133 tRNA synthetases class I (I, L, M and V) YPTB_RS06075 PF13603 Leucyl-tRNA synthetase, Domain 2 YPTB_RS06080 PF07295 Zinc-ribbon containing domain YPTB_RS06085 PF00005 ABC transporter YPTB_RS06090 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS06095 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS06100 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS06105 PF00795 Carbon-nitrogen hydrolase YPTB_RS06110 PF00571 CBS domain YPTB_RS06110 PF03471 Transporter associated domain YPTB_RS06115 PF02130 Uncharacterized protein family UPF0054 YPTB_RS06120 PF02562 PhoH-like protein YPTB_RS06125 PF00919 Uncharacterized protein family UPF0004 YPTB_RS06125 PF01938 TRAM domain YPTB_RS06125 PF04055 Radical SAM superfamily YPTB_RS06130 PF01494 FAD binding domain YPTB_RS06175 PF00733 Asparagine synthase YPTB_RS06175 PF13537 Glutamine amidotransferase domain YPTB_RS06180 PF13344 Haloacid dehalogenase-like hydrolase YPTB_RS06185 PF00480 ROK family YPTB_RS06185 PF01047 MarR family YPTB_RS06190 PF01979 Amidohydrolase family YPTB_RS06195 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPTB_RS06200 PF00367 phosphotransferase system, EIIB YPTB_RS06200 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPTB_RS06200 PF02378 Phosphotransferase system, EIIC YPTB_RS06205 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPTB_RS06205 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTB_RS06210 PF03573 outer membrane porin, OprD family YPTB_RS06215 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPTB_RS06215 PF00728 Glycosyl hydrolase family 20, catalytic domain YPTB_RS06215 PF03173 Putative carbohydrate binding domain YPTB_RS06215 PF02838 Glycosyl hydrolase family 20, domain 2 YPTB_RS06220 PF01475 Ferric uptake regulator family YPTB_RS06225 PF00258 Flavodoxin YPTB_RS06230 PF01402 Ribbon-helix-helix protein, copG family YPTB_RS06240 PF12697 Alpha/beta hydrolase family YPTB_RS06250 PF00589 Phage integrase family YPTB_RS06250 PF13356 Arm DNA-binding domain YPTB_RS06255 PF01527 Transposase YPTB_RS06260 PF00589 Phage integrase family YPTB_RS06260 PF13356 Arm DNA-binding domain YPTB_RS06265 PF00665 Integrase core domain YPTB_RS06265 PF02796 Helix-turn-helix domain of resolvase YPTB_RS06270 PF01695 IstB-like ATP binding protein YPTB_RS06275 PF00589 Phage integrase family YPTB_RS06275 PF13356 Arm DNA-binding domain YPTB_RS06280 PF01668 SmpB protein YPTB_RS06285 PF03364 Polyketide cyclase / dehydrase and lipid transport YPTB_RS06290 PF03658 RnfH family Ubiquitin YPTB_RS06295 PF04355 SmpA / OmlA family YPTB_RS06300 PF02463 RecF/RecN/SMC N terminal domain YPTB_RS06305 PF01513 ATP-NAD kinase YPTB_RS06310 PF01025 GrpE YPTB_RS06315 PF00285 Citrate synthase, C-terminal domain YPTB_RS06320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPTB_RS06325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPTB_RS06330 PF02910 Fumarate reductase flavoprotein C-term YPTB_RS06330 PF00890 FAD binding domain YPTB_RS06335 PF13085 2Fe-2S iron-sulfur cluster binding domain YPTB_RS06340 PF02779 Transketolase, pyrimidine binding domain YPTB_RS06340 PF16078 2-oxoglutarate dehydrogenase N-terminus YPTB_RS06340 PF16870 2-oxoglutarate dehydrogenase C-terminal YPTB_RS06340 PF00676 Dehydrogenase E1 component YPTB_RS06345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPTB_RS06345 PF00364 Biotin-requiring enzyme YPTB_RS06345 PF02817 e3 binding domain YPTB_RS06350 PF08442 ATP-grasp domain YPTB_RS06350 PF00549 CoA-ligase YPTB_RS06355 PF02629 CoA binding domain YPTB_RS06355 PF00549 CoA-ligase YPTB_RS06360 PF01654 Cytochrome bd terminal oxidase subunit I YPTB_RS06365 PF02322 Cytochrome bd terminal oxidase subunit II YPTB_RS06370 PF08173 Membrane bound YbgT-like protein YPTB_RS06375 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPTB_RS06380 PF03061 Thioesterase superfamily YPTB_RS06385 PF01618 MotA/TolQ/ExbB proton channel family YPTB_RS06390 PF02472 Biopolymer transport protein ExbD/TolR YPTB_RS06395 PF06519 TolA C-terminal YPTB_RS06395 PF06519 TolA C-terminal YPTB_RS06400 PF07676 WD40-like Beta Propeller Repeat YPTB_RS06400 PF04052 TolB amino-terminal domain YPTB_RS06405 PF00691 OmpA family YPTB_RS06410 PF16331 TolA binding protein trimerisation YPTB_RS06410 PF13174 Tetratricopeptide repeat YPTB_RS06450 PF02445 Quinolinate synthetase A protein YPTB_RS06455 PF04973 Nicotinamide mononucleotide transporter YPTB_RS06460 PF01545 Cation efflux family YPTB_RS06465 PF00793 DAHP synthetase I family YPTB_RS06470 PF00300 Histidine phosphatase superfamily (branch 1) YPTB_RS06480 PF01263 Aldose 1-epimerase YPTB_RS06485 PF00288 GHMP kinases N terminal domain YPTB_RS06485 PF10509 Galactokinase galactose-binding signature YPTB_RS06485 PF08544 GHMP kinases C terminal YPTB_RS06490 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPTB_RS06490 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPTB_RS06495 PF16363 GDP-mannose 4,6 dehydratase YPTB_RS06510 PF00005 ABC transporter YPTB_RS06515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS06515 PF03459 TOBE domain YPTB_RS06520 PF10766 Multidrug efflux pump-associated protein AcrZ YPTB_RS06530 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS06535 PF03459 TOBE domain YPTB_RS06535 PF00005 ABC transporter YPTB_RS06545 PF10282 Lactonase, 7-bladed beta-propeller YPTB_RS06550 PF00202 Aminotransferase class-III YPTB_RS06555 PF06968 Biotin and Thiamin Synthesis associated domain YPTB_RS06555 PF04055 Radical SAM superfamily YPTB_RS06560 PF00155 Aminotransferase class I and II YPTB_RS06565 PF08241 Methyltransferase domain YPTB_RS06575 PF00005 ABC transporter YPTB_RS06575 PF09383 NIL domain YPTB_RS06580 PF04851 Type III restriction enzyme, res subunit YPTB_RS06580 PF02151 UvrB/uvrC motif YPTB_RS06580 PF00271 Helicase conserved C-terminal domain YPTB_RS06580 PF12344 Ultra-violet resistance protein B YPTB_RS06580 PF17757 UvrB interaction domain YPTB_RS06585 PF09905 DNA-binding protein VF530 YPTB_RS06590 PF01933 Uncharacterised protein family UPF0052 YPTB_RS06600 PF04055 Radical SAM superfamily YPTB_RS06600 PF06463 Molybdenum Cofactor Synthesis C YPTB_RS06605 PF01967 MoaC family YPTB_RS06610 PF02597 ThiS family YPTB_RS06615 PF02391 MoaE protein YPTB_RS06620 PF01027 Inhibitor of apoptosis-promoting Bax1 YPTB_RS06625 PF05199 GMC oxidoreductase YPTB_RS06625 PF00732 GMC oxidoreductase YPTB_RS06630 PF00171 Aldehyde dehydrogenase family YPTB_RS06635 PF00440 Bacterial regulatory proteins, tetR family YPTB_RS06635 PF13977 BetI-type transcriptional repressor, C-terminal YPTB_RS06640 PF02028 BCCT, betaine/carnitine/choline family transporter YPTB_RS06645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS06645 PF03466 LysR substrate binding domain YPTB_RS06655 PF01048 Phosphorylase superfamily YPTB_RS06660 PF03825 Nucleoside H+ symporter YPTB_RS06665 PF13801 Heavy-metal resistance YPTB_RS06670 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS06675 PF02954 Bacterial regulatory protein, Fis family YPTB_RS06675 PF00158 Sigma-54 interaction domain YPTB_RS06675 PF00072 Response regulator receiver domain YPTB_RS06680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTB_RS06685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS06685 PF03466 LysR substrate binding domain YPTB_RS06710 PF00005 ABC transporter YPTB_RS06715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS06720 PF00440 Bacterial regulatory proteins, tetR family YPTB_RS06720 PF09209 Tetracyclin repressor-like, C-terminal domain YPTB_RS06725 PF00270 DEAD/DEAH box helicase YPTB_RS06725 PF00271 Helicase conserved C-terminal domain YPTB_RS06735 PF01207 Dihydrouridine synthase (Dus) YPTB_RS06745 PF00768 D-alanyl-D-alanine carboxypeptidase YPTB_RS06750 PF09330 D-lactate dehydrogenase, membrane binding YPTB_RS06750 PF01565 FAD binding domain YPTB_RS06755 PF01928 CYTH domain YPTB_RS06760 PF01844 HNH endonuclease YPTB_RS06770 PF04226 Transglycosylase associated protein YPTB_RS06775 PF00005 ABC transporter YPTB_RS06785 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS06790 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS06795 PF07308 Protein of unknown function (DUF1456) YPTB_RS06800 PF00158 Sigma-54 interaction domain YPTB_RS06800 PF13188 PAS domain YPTB_RS06800 PF02954 Bacterial regulatory protein, Fis family YPTB_RS06805 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS06810 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS06815 PF00005 ABC transporter YPTB_RS06820 PF00005 ABC transporter YPTB_RS06835 PF00581 Rhodanese-like domain YPTB_RS06840 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTB_RS06845 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS06850 PF00005 ABC transporter YPTB_RS06855 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS06860 PF13520 Amino acid permease YPTB_RS06865 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPTB_RS06865 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPTB_RS06865 PF01276 Orn/Lys/Arg decarboxylase, major domain YPTB_RS06875 PF00892 EamA-like transporter family YPTB_RS06880 PF00267 Gram-negative porin YPTB_RS06885 PF13307 Helicase C-terminal domain YPTB_RS06885 PF06733 DEAD_2 YPTB_RS06890 PF06628 Catalase-related immune-responsive YPTB_RS06890 PF00199 Catalase YPTB_RS06895 PF07437 YfaZ precursor YPTB_RS06900 PF03222 Tryptophan/tyrosine permease family YPTB_RS06905 PF00994 Probable molybdopterin binding domain YPTB_RS06910 PF03974 Ecotin YPTB_RS06915 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB_RS06920 PF00268 Ribonucleotide reductase, small chain YPTB_RS06925 PF00317 Ribonucleotide reductase, all-alpha domain YPTB_RS06925 PF02867 Ribonucleotide reductase, barrel domain YPTB_RS06925 PF03477 ATP cone domain YPTB_RS06935 PF00521 DNA gyrase/topoisomerase IV, subunit A YPTB_RS06935 PF03989 DNA gyrase C-terminal domain, beta-propeller YPTB_RS06945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS06945 PF09456 RcsC Alpha-Beta-Loop (ABL) YPTB_RS06945 PF00072 Response regulator receiver domain YPTB_RS06945 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS06950 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS06950 PF00072 Response regulator receiver domain YPTB_RS06955 PF16359 RcsD-ABL domain YPTB_RS06955 PF01627 Hpt domain YPTB_RS06955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS06960 PF07690 Major Facilitator Superfamily YPTB_RS06970 PF00267 Gram-negative porin YPTB_RS06985 PF00144 Beta-lactamase YPTB_RS07000 PF12706 Beta-lactamase superfamily domain YPTB_RS07005 PF00672 HAMP domain YPTB_RS07005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB_RS07005 PF02743 Cache domain YPTB_RS07010 PF01278 Omptin family YPTB_RS07015 PF06183 DinI-like family YPTB_RS07020 PF00717 Peptidase S24-like YPTB_RS07020 PF01381 Helix-turn-helix YPTB_RS07025 PF06530 Phage antitermination protein Q YPTB_RS07030 PF17042 Nucleotide-binding C-terminal domain YPTB_RS07030 PF07005 Sugar-binding N-terminal domain YPTB_RS07040 PF08220 DeoR-like helix-turn-helix domain YPTB_RS07040 PF00455 DeoR C terminal sensor domain YPTB_RS07045 PF01261 Xylose isomerase-like TIM barrel YPTB_RS07065 PF17482 Phage tail sheath C-terminal domain YPTB_RS07065 PF04984 Phage tail sheath protein subtilisin-like domain YPTB_RS07110 PF04865 Baseplate J-like protein YPTB_RS07135 PF01418 Helix-turn-helix domain, rpiR family YPTB_RS07135 PF01380 SIS domain YPTB_RS07140 PF00232 Glycosyl hydrolase family 1 YPTB_RS07165 PF05638 Type VI secretion system effector, Hcp YPTB_RS07185 PF00884 Sulfatase YPTB_RS07185 PF11893 Domain of unknown function (DUF3413) YPTB_RS07190 PF07208 Protein of unknown function (DUF1414) YPTB_RS07195 PF04245 37-kD nucleoid-associated bacterial protein YPTB_RS07200 PF01386 Ribosomal L25p family YPTB_RS07205 PF04851 Type III restriction enzyme, res subunit YPTB_RS07205 PF00271 Helicase conserved C-terminal domain YPTB_RS07210 PF00849 RNA pseudouridylate synthase YPTB_RS07210 PF01479 S4 domain YPTB_RS07215 PF07690 Major Facilitator Superfamily YPTB_RS07220 PF13989 YejG-like protein YPTB_RS07225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB_RS07225 PF00005 ABC transporter YPTB_RS07230 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB_RS07230 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS07235 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS07240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB_RS07245 PF00563 EAL domain YPTB_RS07245 PF12792 CSS motif domain associated with EAL YPTB_RS07250 PF00877 NlpC/P60 family YPTB_RS07255 PF01569 PAP2 superfamily YPTB_RS07260 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPTB_RS07260 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPTB_RS07270 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS07270 PF07729 FCD domain YPTB_RS07275 PF01232 Mannitol dehydrogenase Rossmann domain YPTB_RS07275 PF08125 Mannitol dehydrogenase C-terminal domain YPTB_RS07280 PF03786 D-mannonate dehydratase (UxuA) YPTB_RS07285 PF08207 Elongation factor P (EF-P) KOW-like domain YPTB_RS07285 PF09285 Elongation factor P, C-terminal YPTB_RS07285 PF01132 Elongation factor P (EF-P) OB domain YPTB_RS07290 PF03222 Tryptophan/tyrosine permease family YPTB_RS07295 PF03692 Putative zinc- or iron-chelating domain YPTB_RS07305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB_RS07305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB_RS07305 PF01842 ACT domain YPTB_RS07315 PF00171 Aldehyde dehydrogenase family YPTB_RS07320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB_RS07320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS07325 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPTB_RS07335 PF00005 ABC transporter YPTB_RS07340 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS07345 PF00293 NUDIX domain YPTB_RS07350 PF00381 PTS HPr component phosphorylation site YPTB_RS07350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB_RS07355 PF00294 pfkB family carbohydrate kinase YPTB_RS07360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB_RS07360 PF02378 Phosphotransferase system, EIIC YPTB_RS07365 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS07370 PF17550 Family of unknown function YPTB_RS07380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS07380 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS07385 PF00577 Outer membrane usher protein YPTB_RS07385 PF13953 PapC C-terminal domain YPTB_RS07385 PF13954 PapC N-terminal domain YPTB_RS07390 PF01261 Xylose isomerase-like TIM barrel YPTB_RS07395 PF03601 Conserved hypothetical protein 698 YPTB_RS07400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS07400 PF03466 LysR substrate binding domain YPTB_RS07405 PF00324 Amino acid permease YPTB_RS07415 PF01032 FecCD transport family YPTB_RS07420 PF00005 ABC transporter YPTB_RS07425 PF00593 TonB dependent receptor YPTB_RS07425 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS07430 PF00043 Glutathione S-transferase, C-terminal domain YPTB_RS07430 PF13417 Glutathione S-transferase, N-terminal domain YPTB_RS07450 PF03180 NLPA lipoprotein YPTB_RS07455 PF00005 ABC transporter YPTB_RS07455 PF09383 NIL domain YPTB_RS07460 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS07465 PF07943 Penicillin-binding protein 5, C-terminal domain YPTB_RS07465 PF00768 D-alanyl-D-alanine carboxypeptidase YPTB_RS07480 PF08220 DeoR-like helix-turn-helix domain YPTB_RS07480 PF00455 DeoR C terminal sensor domain YPTB_RS07485 PF01791 DeoC/LacD family aldolase YPTB_RS07490 PF01569 PAP2 superfamily YPTB_RS07500 PF06826 Predicted Permease Membrane Region YPTB_RS07500 PF02080 TrkA-C domain YPTB_RS07505 PF00462 Glutaredoxin YPTB_RS07510 PF07214 Protein of unknown function (DUF1418) YPTB_RS07520 PF10722 Putative bacterial sensory transduction regulator YPTB_RS07525 PF13416 Bacterial extracellular solute-binding protein YPTB_RS07530 PF00005 ABC transporter YPTB_RS07530 PF08402 TOBE domain YPTB_RS07535 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS07540 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS07545 PF10767 Protein of unknown function (DUF2593) YPTB_RS07550 PF05958 tRNA (Uracil-5-)-methyltransferase YPTB_RS07555 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS07575 PF01032 FecCD transport family YPTB_RS07580 PF00005 ABC transporter YPTB_RS07585 PF03059 Nicotianamine synthase protein YPTB_RS07590 PF10100 Staphylopine dehydrogenase YPTB_RS07595 PF00892 EamA-like transporter family YPTB_RS07605 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS07610 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS07615 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS07620 PF00005 ABC transporter YPTB_RS07625 PF01817 Chorismate mutase type II YPTB_RS07630 PF12883 Protein of unknown function (DUF3828) YPTB_RS07635 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS07640 PF11066 Protein of unknown function (DUF2867) YPTB_RS07640 PF13460 NAD(P)H-binding YPTB_RS07645 PF01212 Beta-eliminating lyase YPTB_RS07650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB_RS07650 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB_RS07650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB_RS07655 PF00175 Oxidoreductase NAD-binding domain YPTB_RS07655 PF00970 Oxidoreductase FAD-binding domain YPTB_RS07655 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB_RS07660 PF03063 Prismane/CO dehydrogenase family YPTB_RS07665 PF03956 Lysine exporter LysO YPTB_RS07670 PF11398 Protein of unknown function (DUF2813) YPTB_RS07675 PF04393 Protein of unknown function (DUF535) YPTB_RS07680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS07685 PF02687 FtsX-like permease family YPTB_RS07685 PF00005 ABC transporter YPTB_RS07685 PF12704 MacB-like periplasmic core domain YPTB_RS07690 PF00313 'Cold-shock' DNA-binding domain YPTB_RS07695 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPTB_RS07700 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS07700 PF02861 Clp amino terminal domain, pathogenicity island component YPTB_RS07700 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS07700 PF17871 AAA lid domain YPTB_RS07700 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS07705 PF01176 Translation initiation factor 1A / IF-1 YPTB_RS07710 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPTB_RS07715 PF00664 ABC transporter transmembrane region YPTB_RS07715 PF00005 ABC transporter YPTB_RS07720 PF00005 ABC transporter YPTB_RS07720 PF00664 ABC transporter transmembrane region YPTB_RS07730 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS07735 PF01037 Lrp/AsnC ligand binding domain YPTB_RS07740 PF09397 Ftsk gamma domain YPTB_RS07740 PF01580 FtsK/SpoIIIE family YPTB_RS07740 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPTB_RS07740 PF17854 FtsK alpha domain YPTB_RS07745 PF03548 Outer membrane lipoprotein carrier protein LolA YPTB_RS07750 PF12002 MgsA AAA+ ATPase C terminal YPTB_RS07750 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS07750 PF16193 AAA C-terminal domain YPTB_RS07755 PF02403 Seryl-tRNA synthetase N-terminal domain YPTB_RS07755 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTB_RS07760 PF07690 Major Facilitator Superfamily YPTB_RS07765 PF04055 Radical SAM superfamily YPTB_RS07775 PF01228 Glycine radical YPTB_RS07775 PF02901 Pyruvate formate lyase-like YPTB_RS07780 PF01226 Formate/nitrite transporter YPTB_RS07785 PF18381 YcaO cyclodehydratase C-terminal domain YPTB_RS07785 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPTB_RS07790 PF17763 Glutaminase/Asparaginase C-terminal domain YPTB_RS07790 PF00710 Asparaginase, N-terminal YPTB_RS07805 PF00266 Aminotransferase class-V YPTB_RS07810 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPTB_RS07815 PF02224 Cytidylate kinase YPTB_RS07820 PF00575 S1 RNA binding domain YPTB_RS07825 PF00216 Bacterial DNA-binding protein YPTB_RS07830 PF00753 Metallo-beta-lactamase superfamily YPTB_RS07830 PF03772 Competence protein YPTB_RS07835 PF00664 ABC transporter transmembrane region YPTB_RS07835 PF00005 ABC transporter YPTB_RS07840 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPTB_RS07845 PF07063 Domain of unknown function (DUF1338) YPTB_RS07855 PF00313 'Cold-shock' DNA-binding domain YPTB_RS07860 PF03966 Trm112p-like protein YPTB_RS07865 PF02348 Cytidylyltransferase YPTB_RS07870 PF01636 Phosphotransferase enzyme family YPTB_RS07880 PF13847 Methyltransferase domain YPTB_RS07885 PF17193 MukF C-terminal domain YPTB_RS07885 PF03882 MukF winged-helix domain YPTB_RS07885 PF17192 MukF middle domain YPTB_RS07890 PF04288 MukE-like family YPTB_RS07895 PF04310 MukB N-terminal YPTB_RS07895 PF16330 MukB hinge domain YPTB_RS07900 PF03734 L,D-transpeptidase catalytic domain YPTB_RS07900 PF01471 Putative peptidoglycan binding domain YPTB_RS07905 PF05951 Bacterial protein of unknown function (DUF882) YPTB_RS07910 PF00753 Metallo-beta-lactamase superfamily YPTB_RS07915 PF00155 Aminotransferase class I and II YPTB_RS07920 PF00267 Gram-negative porin YPTB_RS07925 PF01336 OB-fold nucleic acid binding domain YPTB_RS07925 PF00152 tRNA synthetases class II (D, K and N) YPTB_RS07930 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPTB_RS07930 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPTB_RS07935 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPTB_RS07935 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPTB_RS07935 PF01433 Peptidase family M1 domain YPTB_RS07940 PF01180 Dihydroorotate dehydrogenase YPTB_RS07945 PF07126 Cell-division protein ZapC YPTB_RS07950 PF03476 MOSC N-terminal beta barrel domain YPTB_RS07950 PF03473 MOSC domain YPTB_RS07950 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB_RS07955 PF01170 Putative RNA methylase family UPF0020 YPTB_RS07955 PF10672 S-adenosylmethionine-dependent methyltransferase YPTB_RS07955 PF02926 THUMP domain YPTB_RS07960 PF16326 ABC transporter C-terminal domain YPTB_RS07960 PF00005 ABC transporter YPTB_RS07960 PF12848 ABC transporter YPTB_RS07965 PF04403 Paraquat-inducible protein A YPTB_RS07970 PF02470 MlaD protein YPTB_RS07975 PF03886 ABC-type transport auxiliary lipoprotein component YPTB_RS07985 PF04957 Ribosome modulation factor YPTB_RS07990 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB_RS07990 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB_RS08000 PF07977 FabA-like domain YPTB_RS08005 PF13654 AAA domain YPTB_RS08005 PF05362 Lon protease (S16) C-terminal proteolytic domain YPTB_RS08010 PF17414 MatP C-terminal ribbon-helix-helix domain YPTB_RS08010 PF06303 MatP N-terminal domain YPTB_RS08015 PF01389 OmpA-like transmembrane domain YPTB_RS08015 PF00691 OmpA family YPTB_RS08020 PF03846 Cell division inhibitor SulA YPTB_RS08025 PF04993 TfoX N-terminal domain YPTB_RS08025 PF04994 TfoX C-terminal domain YPTB_RS08030 PF12805 FUSC-like inner membrane protein yccS YPTB_RS08035 PF03733 Inner membrane component domain YPTB_RS08040 PF13361 UvrD-like helicase C-terminal domain YPTB_RS08040 PF00580 UvrD/REP helicase N-terminal domain YPTB_RS08040 PF12462 DNA helicase IV / RNA helicase N terminal YPTB_RS08045 PF02142 MGS-like domain YPTB_RS08050 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPTB_RS08055 PF13380 CoA binding domain YPTB_RS08060 PF08755 Hemimethylated DNA-binding protein YccV like YPTB_RS08065 PF17785 PUA-like domain YPTB_RS08065 PF10672 S-adenosylmethionine-dependent methyltransferase YPTB_RS08070 PF00708 Acylphosphatase YPTB_RS08075 PF04358 DsrC like protein YPTB_RS08085 PF13610 DDE domain YPTB_RS08105 PF01565 FAD binding domain YPTB_RS08105 PF08031 Berberine and berberine like YPTB_RS08120 PF07977 FabA-like domain YPTB_RS08125 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB_RS08125 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB_RS08135 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPTB_RS08135 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPTB_RS08145 PF00378 Enoyl-CoA hydratase/isomerase YPTB_RS08160 PF00550 Phosphopantetheine attachment site YPTB_RS08165 PF00698 Acyl transferase domain YPTB_RS08180 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPTB_RS08195 PF05736 OprF membrane domain YPTB_RS08195 PF00691 OmpA family YPTB_RS08205 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS08205 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS08205 PF17871 AAA lid domain YPTB_RS08205 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS08210 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPTB_RS08210 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS08210 PF13296 Putative type VI secretion system Rhs element Vgr YPTB_RS08225 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPTB_RS08225 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS08225 PF13296 Putative type VI secretion system Rhs element Vgr YPTB_RS08300 PF00005 ABC transporter YPTB_RS08300 PF12848 ABC transporter YPTB_RS08310 PF00899 ThiF family YPTB_RS08315 PF03454 MoeA C-terminal region (domain IV) YPTB_RS08315 PF00994 Probable molybdopterin binding domain YPTB_RS08315 PF03453 MoeA N-terminal region (domain I and II) YPTB_RS08325 PF00005 ABC transporter YPTB_RS08330 PF13533 Biotin-lipoyl like YPTB_RS08350 PF00756 Putative esterase YPTB_RS08355 PF00107 Zinc-binding dehydrogenase YPTB_RS08355 PF08240 Alcohol dehydrogenase GroES-like domain YPTB_RS08360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS08360 PF03466 LysR substrate binding domain YPTB_RS08365 PF06779 Uncharacterised MFS-type transporter YbfB YPTB_RS08370 PF01227 GTP cyclohydrolase I YPTB_RS08375 PF04235 Protein of unknown function (DUF418) YPTB_RS08380 PF13407 Periplasmic binding protein domain YPTB_RS08385 PF00005 ABC transporter YPTB_RS08390 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS08395 PF02698 DUF218 domain YPTB_RS08400 PF00390 Malic enzyme, N-terminal domain YPTB_RS08400 PF03949 Malic enzyme, NAD binding domain YPTB_RS08405 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPTB_RS08405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPTB_RS08410 PF04172 LrgB-like family YPTB_RS08415 PF03788 LrgA family YPTB_RS08420 PF07690 Major Facilitator Superfamily YPTB_RS08440 PF01588 Putative tRNA binding domain YPTB_RS08440 PF09334 tRNA synthetases class I (M) YPTB_RS08445 PF10609 NUBPL iron-transfer P-loop NTPase YPTB_RS08450 PF00485 Phosphoribulokinase / Uridine kinase family YPTB_RS08455 PF00692 dUTPase YPTB_RS08460 PF05170 AsmA family YPTB_RS08465 PF03741 Integral membrane protein TerC family YPTB_RS08465 PF03471 Transporter associated domain YPTB_RS08465 PF00571 CBS domain YPTB_RS08470 PF11575 FhuF 2Fe-2S C-terminal domain YPTB_RS08470 PF06276 Ferric iron reductase FhuF-like transporter YPTB_RS08475 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPTB_RS08480 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPTB_RS08490 PF04183 IucA / IucC family YPTB_RS08490 PF06276 Ferric iron reductase FhuF-like transporter YPTB_RS08495 PF00005 ABC transporter YPTB_RS08500 PF01032 FecCD transport family YPTB_RS08505 PF01032 FecCD transport family YPTB_RS08510 PF01497 Periplasmic binding protein YPTB_RS08515 PF00593 TonB dependent receptor YPTB_RS08515 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS08515 PF07660 Secretin and TonB N terminus short domain YPTB_RS08520 PF04183 IucA / IucC family YPTB_RS08520 PF06276 Ferric iron reductase FhuF-like transporter YPTB_RS08525 PF00483 Nucleotidyl transferase YPTB_RS08530 PF00483 Nucleotidyl transferase YPTB_RS08535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPTB_RS08535 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPTB_RS08545 PF01797 Transposase IS200 like YPTB_RS08550 PF01502 Phosphoribosyl-AMP cyclohydrolase YPTB_RS08550 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPTB_RS08555 PF00977 Histidine biosynthesis protein YPTB_RS08560 PF00977 Histidine biosynthesis protein YPTB_RS08565 PF00117 Glutamine amidotransferase class-I YPTB_RS08570 PF00475 Imidazoleglycerol-phosphate dehydratase YPTB_RS08575 PF00155 Aminotransferase class I and II YPTB_RS08580 PF00815 Histidinol dehydrogenase YPTB_RS08585 PF08029 HisG, C-terminal domain YPTB_RS08585 PF01634 ATP phosphoribosyltransferase YPTB_RS08590 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS08610 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS08615 PF00005 ABC transporter YPTB_RS08620 PF00465 Iron-containing alcohol dehydrogenase YPTB_RS08630 PF13520 Amino acid permease YPTB_RS08635 PF00929 Exonuclease YPTB_RS08635 PF08411 Exonuclease C-terminal YPTB_RS08645 PF04363 Protein of unknown function (DUF496) YPTB_RS08650 PF11924 Inverse autotransporter, beta-domain YPTB_RS08650 PF02369 Bacterial Ig-like domain (group 1) YPTB_RS08650 PF09134 Invasin, domain 3 YPTB_RS08655 PF07690 Major Facilitator Superfamily YPTB_RS08660 PF04134 Protein of unknown function, DUF393 YPTB_RS08670 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB_RS08675 PF13378 Enolase C-terminal domain-like YPTB_RS08675 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPTB_RS08680 PF01070 FMN-dependent dehydrogenase YPTB_RS08685 PF00764 Arginosuccinate synthase YPTB_RS08690 PF01554 MatE YPTB_RS08700 PF01522 Polysaccharide deacetylase YPTB_RS08710 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPTB_RS08720 PF02796 Helix-turn-helix domain of resolvase YPTB_RS08720 PF00665 Integrase core domain YPTB_RS08725 PF01695 IstB-like ATP binding protein YPTB_RS08760 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS08760 PF00593 TonB dependent receptor YPTB_RS08765 PF00501 AMP-binding enzyme YPTB_RS08765 PF13193 AMP-binding enzyme C-terminal domain YPTB_RS08770 PF00975 Thioesterase domain YPTB_RS08780 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB_RS08780 PF00550 Phosphopantetheine attachment site YPTB_RS08780 PF16197 Ketoacyl-synthetase C-terminal extension YPTB_RS08780 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB_RS08780 PF00668 Condensation domain YPTB_RS08780 PF00698 Acyl transferase domain YPTB_RS08785 PF00668 Condensation domain YPTB_RS08785 PF08242 Methyltransferase domain YPTB_RS08785 PF00550 Phosphopantetheine attachment site YPTB_RS08785 PF00501 AMP-binding enzyme YPTB_RS08795 PF00664 ABC transporter transmembrane region YPTB_RS08795 PF08021 Siderophore-interacting FAD-binding domain YPTB_RS08795 PF00005 ABC transporter YPTB_RS08795 PF04954 Siderophore-interacting protein YPTB_RS08800 PF00005 ABC transporter YPTB_RS08800 PF00664 ABC transporter transmembrane region YPTB_RS08805 PF07690 Major Facilitator Superfamily YPTB_RS08810 PF00425 chorismate binding enzyme YPTB_RS08825 PF00072 Response regulator receiver domain YPTB_RS08825 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS08830 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPTB_RS08840 PF03480 Bacterial extracellular solute-binding protein, family 7 YPTB_RS08845 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPTB_RS08845 PF01648 4'-phosphopantetheinyl transferase superfamily YPTB_RS08855 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPTB_RS08855 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPTB_RS08860 PF01306 LacY proton/sugar symporter YPTB_RS08865 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS08865 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB_RS08875 PF06167 Glucose-regulated metallo-peptidase M90 YPTB_RS08895 PF00005 ABC transporter YPTB_RS08895 PF00664 ABC transporter transmembrane region YPTB_RS08905 PF12833 Helix-turn-helix domain YPTB_RS08915 PF10964 Protein of unknown function (DUF2766) YPTB_RS08920 PF13996 YobH-like protein YPTB_RS08925 PF13974 YebO-like protein YPTB_RS08940 PF00324 Amino acid permease YPTB_RS08945 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPTB_RS08955 PF10736 Protein of unknown function (DUF2627) YPTB_RS08960 PF00313 'Cold-shock' DNA-binding domain YPTB_RS08965 PF02578 Multi-copper polyphenol oxidoreductase laccase YPTB_RS08970 PF13847 Methyltransferase domain YPTB_RS08980 PF13426 PAS domain YPTB_RS08980 PF08448 PAS fold YPTB_RS08980 PF08447 PAS fold YPTB_RS08980 PF05231 MASE1 YPTB_RS08980 PF00990 Diguanylate cyclase, GGDEF domain YPTB_RS08980 PF00563 EAL domain YPTB_RS08985 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS08985 PF00593 TonB dependent receptor YPTB_RS08990 PF02659 Putative manganese efflux pump YPTB_RS08995 PF06173 Protein of unknown function (DUF986) YPTB_RS09000 PF03613 PTS system mannose/fructose/sorbose family IID component YPTB_RS09005 PF03609 PTS system sorbose-specific iic component YPTB_RS09010 PF03830 PTS system sorbose subfamily IIB component YPTB_RS09010 PF03610 PTS system fructose IIA component YPTB_RS09015 PF03741 Integral membrane protein TerC family YPTB_RS09015 PF03471 Transporter associated domain YPTB_RS09020 PF01047 MarR family YPTB_RS09025 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB_RS09030 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB_RS09035 PF00171 Aldehyde dehydrogenase family YPTB_RS09040 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPTB_RS09045 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPTB_RS09050 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB_RS09055 PF03328 HpcH/HpaI aldolase/citrate lyase family YPTB_RS09060 PF07690 Major Facilitator Superfamily YPTB_RS09065 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPTB_RS09065 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPTB_RS09070 PF01613 Flavin reductase like domain YPTB_RS09075 PF03315 Serine dehydratase beta chain YPTB_RS09075 PF03313 Serine dehydratase alpha chain YPTB_RS09080 PF00293 NUDIX domain YPTB_RS09085 PF00425 chorismate binding enzyme YPTB_RS09085 PF04715 Anthranilate synthase component I, N terminal region YPTB_RS09090 PF03701 Uncharacterised protein family (UPF0181) YPTB_RS09095 PF02222 ATP-grasp domain YPTB_RS09100 PF00271 Helicase conserved C-terminal domain YPTB_RS09100 PF00270 DEAD/DEAH box helicase YPTB_RS09100 PF03880 DbpA RNA binding domain YPTB_RS09105 PF07130 YebG protein YPTB_RS09110 PF04266 ASCH domain YPTB_RS09115 PF13995 YebF-like protein YPTB_RS09120 PF00326 Prolyl oligopeptidase family YPTB_RS09120 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPTB_RS09125 PF00561 alpha/beta hydrolase fold YPTB_RS09130 PF06440 DNA polymerase III, theta subunit YPTB_RS09135 PF00210 Ferritin-like domain YPTB_RS09140 PF04234 CopC domain YPTB_RS09150 PF10709 Protein of unknown function (DUF2511) YPTB_RS09170 PF01312 FlhB HrpN YscU SpaS Family YPTB_RS09175 PF00771 FHIPEP family YPTB_RS09180 PF06366 Flagellar protein FlhE YPTB_RS09185 PF02369 Bacterial Ig-like domain (group 1) YPTB_RS09185 PF11924 Inverse autotransporter, beta-domain YPTB_RS09185 PF07979 Intimin C-type lectin domain YPTB_RS09185 PF09134 Invasin, domain 3 YPTB_RS09190 PF11924 Inverse autotransporter, beta-domain YPTB_RS09190 PF02369 Bacterial Ig-like domain (group 1) YPTB_RS09190 PF09134 Invasin, domain 3 YPTB_RS09190 PF07979 Intimin C-type lectin domain YPTB_RS09195 PF05130 FlgN protein YPTB_RS09200 PF04316 Anti-sigma-28 factor, FlgM YPTB_RS09205 PF17656 FlgA N-terminal domain YPTB_RS09205 PF13144 Chaperone for flagella basal body P-ring formation YPTB_RS09210 PF00460 Flagella basal body rod protein YPTB_RS09215 PF00460 Flagella basal body rod protein YPTB_RS09215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS09220 PF03963 Flagellar hook capping protein - N-terminal region YPTB_RS09220 PF13861 FlgD Tudor-like domain YPTB_RS09220 PF13860 FlgD Ig-like domain YPTB_RS09225 PF07559 Flagellar basal body protein FlaE YPTB_RS09225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS09225 PF00460 Flagella basal body rod protein YPTB_RS09230 PF00460 Flagella basal body rod protein YPTB_RS09230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS09235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS09235 PF00460 Flagella basal body rod protein YPTB_RS09240 PF02107 Flagellar L-ring protein YPTB_RS09245 PF02119 Flagellar P-ring protein YPTB_RS09250 PF10135 Rod binding protein YPTB_RS09250 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPTB_RS09255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS09255 PF00460 Flagella basal body rod protein YPTB_RS09260 PF00669 Bacterial flagellin N-terminal helical region YPTB_RS09265 PF04198 Putative sugar-binding domain YPTB_RS09270 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB_RS09275 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS09280 PF13407 Periplasmic binding protein domain YPTB_RS09285 PF00005 ABC transporter YPTB_RS09290 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS09295 PF00294 pfkB family carbohydrate kinase YPTB_RS09305 PF01311 Bacterial export proteins, family 1 YPTB_RS09310 PF01313 Bacterial export proteins, family 3 YPTB_RS09315 PF00813 FliP family YPTB_RS09320 PF04347 Flagellar biosynthesis protein, FliO YPTB_RS09325 PF16973 Flagellar motor switch protein FliN N-terminal YPTB_RS09325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTB_RS09330 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTB_RS09330 PF02154 Flagellar motor switch protein FliM YPTB_RS09335 PF03748 Flagellar basal body-associated protein FliL YPTB_RS09340 PF02120 Flagellar hook-length control protein FliK YPTB_RS09345 PF02050 Flagellar FliJ protein YPTB_RS09350 PF18269 T3SS EscN ATPase C-terminal domain YPTB_RS09350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB_RS09355 PF02108 Flagellar assembly protein FliH YPTB_RS09360 PF01706 FliG C-terminal domain YPTB_RS09360 PF14842 FliG N-terminal domain YPTB_RS09360 PF14841 FliG middle domain YPTB_RS09365 PF01514 Secretory protein of YscJ/FliF family YPTB_RS09365 PF08345 Flagellar M-ring protein C-terminal YPTB_RS09370 PF02049 Flagellar hook-basal body complex protein FliE YPTB_RS09390 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTB_RS09395 PF01966 HD domain YPTB_RS09400 PF12833 Helix-turn-helix domain YPTB_RS09410 PF05400 Flagellar protein FliT YPTB_RS09415 PF02561 Flagellar protein FliS YPTB_RS09420 PF07196 Flagellin hook IN motif YPTB_RS09420 PF02465 Flagellar hook-associated protein 2 N-terminus YPTB_RS09420 PF07195 Flagellar hook-associated protein 2 C-terminus YPTB_RS09425 PF00669 Bacterial flagellin N-terminal helical region YPTB_RS09425 PF00700 Bacterial flagellin C-terminal helical region YPTB_RS09425 PF08884 Flagellin D3 domain YPTB_RS09430 PF04539 Sigma-70 region 3 YPTB_RS09430 PF04545 Sigma-70, region 4 YPTB_RS09430 PF04542 Sigma-70 region 2 YPTB_RS09435 PF02899 Phage integrase, N-terminal SAM-like domain YPTB_RS09440 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS09445 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS09450 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS09455 PF00005 ABC transporter YPTB_RS09470 PF01619 Proline dehydrogenase YPTB_RS09470 PF14850 DNA-binding domain of Proline dehydrogenase YPTB_RS09470 PF00171 Aldehyde dehydrogenase family YPTB_RS09470 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPTB_RS09480 PF00474 Sodium:solute symporter family YPTB_RS09485 PF03239 Iron permease FTR1 family YPTB_RS09490 PF09375 Imelysin YPTB_RS09490 PF13473 Cupredoxin-like domain YPTB_RS09495 PF04261 Dyp-type peroxidase family YPTB_RS09500 PF03358 NADPH-dependent FMN reductase YPTB_RS09505 PF01344 Kelch motif YPTB_RS09510 PF00324 Amino acid permease YPTB_RS09520 PF13505 Outer membrane protein beta-barrel domain YPTB_RS09530 PF06942 GlpM protein YPTB_RS09535 PF10769 Protein of unknown function (DUF2594) YPTB_RS09540 PF00072 Response regulator receiver domain YPTB_RS09540 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS09545 PF08459 UvrC Helix-hairpin-helix N-terminal YPTB_RS09545 PF02151 UvrB/uvrC motif YPTB_RS09545 PF01541 GIY-YIG catalytic domain YPTB_RS09550 PF01066 CDP-alcohol phosphatidyltransferase YPTB_RS09570 PF04606 Ogr/Delta-like zinc finger YPTB_RS09715 PF05840 Bacteriophage replication gene A protein (GPA) YPTB_RS09735 PF06892 Phage regulatory protein CII (CP76) YPTB_RS09745 PF16452 Bacteriophage CI repressor C-terminal domain YPTB_RS09745 PF07022 Bacteriophage CI repressor helix-turn-helix domain YPTB_RS09760 PF02899 Phage integrase, N-terminal SAM-like domain YPTB_RS09760 PF00589 Phage integrase family YPTB_RS09855 PF01381 Helix-turn-helix YPTB_RS09855 PF00717 Peptidase S24-like YPTB_RS09885 PF04381 Putative exonuclease, RdgC YPTB_RS09895 PF01555 DNA methylase YPTB_RS09900 PF05869 DNA N-6-adenine-methyltransferase (Dam) YPTB_RS09915 PF07102 Protein of unknown function (DUF1364) YPTB_RS09940 PF04971 Bacteriophage P21 holin S YPTB_RS09945 PF00959 Phage lysozyme YPTB_RS09965 PF00665 Integrase core domain YPTB_RS09965 PF02796 Helix-turn-helix domain of resolvase YPTB_RS09970 PF01695 IstB-like ATP binding protein YPTB_RS10030 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPTB_RS10130 PF04984 Phage tail sheath protein subtilisin-like domain YPTB_RS10130 PF17482 Phage tail sheath C-terminal domain YPTB_RS10250 PF05840 Bacteriophage replication gene A protein (GPA) YPTB_RS10255 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPTB_RS10260 PF00929 Exonuclease YPTB_RS10355 PF05638 Type VI secretion system effector, Hcp YPTB_RS10380 PF13649 Methyltransferase domain YPTB_RS10485 PF07702 UTRA domain YPTB_RS10485 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS10490 PF00480 ROK family YPTB_RS10495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB_RS10495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB_RS10505 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS10510 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS10515 PF08402 TOBE domain YPTB_RS10515 PF00005 ABC transporter YPTB_RS10530 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS10530 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS10540 PF13953 PapC C-terminal domain YPTB_RS10540 PF13954 PapC N-terminal domain YPTB_RS10540 PF00577 Outer membrane usher protein YPTB_RS10545 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS10545 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS10555 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS10555 PF01627 Hpt domain YPTB_RS10555 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS10555 PF00989 PAS fold YPTB_RS10555 PF00072 Response regulator receiver domain YPTB_RS10560 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS10560 PF00072 Response regulator receiver domain YPTB_RS10565 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPTB_RS10565 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPTB_RS10570 PF01575 MaoC like domain YPTB_RS10575 PF03328 HpcH/HpaI aldolase/citrate lyase family YPTB_RS10580 PF03466 LysR substrate binding domain YPTB_RS10580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS10595 PF07690 Major Facilitator Superfamily YPTB_RS10600 PF04909 Amidohydrolase YPTB_RS10610 PF02508 Rnf-Nqr subunit, membrane protein YPTB_RS10615 PF00155 Aminotransferase class I and II YPTB_RS10620 PF00324 Amino acid permease YPTB_RS10625 PF00455 DeoR C terminal sensor domain YPTB_RS10625 PF08220 DeoR-like helix-turn-helix domain YPTB_RS10635 PF04960 Glutaminase YPTB_RS10645 PF03239 Iron permease FTR1 family YPTB_RS10650 PF10634 Fe2+ transport protein YPTB_RS10660 PF00005 ABC transporter YPTB_RS10660 PF02687 FtsX-like permease family YPTB_RS10660 PF12704 MacB-like periplasmic core domain YPTB_RS10670 PF00005 ABC transporter YPTB_RS10670 PF02687 FtsX-like permease family YPTB_RS10670 PF12704 MacB-like periplasmic core domain YPTB_RS10675 PF00578 AhpC/TSA family YPTB_RS10685 PF09313 Domain of unknown function (DUF1971) YPTB_RS10685 PF03848 Tellurite resistance protein TehB YPTB_RS10690 PF00557 Metallopeptidase family M24 YPTB_RS10700 PF01522 Polysaccharide deacetylase YPTB_RS10700 PF14883 Hypothetical glycosyl hydrolase family 13 YPTB_RS10705 PF00535 Glycosyl transferase family 2 YPTB_RS10710 PF13994 PgaD-like protein YPTB_RS10725 PF02562 PhoH-like protein YPTB_RS10730 PF01699 Sodium/calcium exchanger protein YPTB_RS10735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS10735 PF07730 Histidine kinase YPTB_RS10735 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPTB_RS10735 PF00672 HAMP domain YPTB_RS10740 PF00155 Aminotransferase class I and II YPTB_RS10740 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS10750 PF00202 Aminotransferase class-III YPTB_RS10755 PF04958 Arginine N-succinyltransferase beta subunit YPTB_RS10760 PF00171 Aldehyde dehydrogenase family YPTB_RS10765 PF04996 Succinylarginine dihydrolase YPTB_RS10770 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPTB_RS10775 PF00267 Gram-negative porin YPTB_RS10785 PF01979 Amidohydrolase family YPTB_RS10790 PF07702 UTRA domain YPTB_RS10790 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS10795 PF01979 Amidohydrolase family YPTB_RS10810 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPTB_RS10810 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPTB_RS10815 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS10880 PF08242 Methyltransferase domain YPTB_RS10920 PF00672 HAMP domain YPTB_RS10920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS10920 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS10925 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS10925 PF00072 Response regulator receiver domain YPTB_RS10930 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPTB_RS10950 PF06071 Protein of unknown function (DUF933) YPTB_RS10950 PF01926 50S ribosome-binding GTPase YPTB_RS10955 PF01195 Peptidyl-tRNA hydrolase YPTB_RS10960 PF10762 Protein of unknown function (DUF2583) YPTB_RS10970 PF14572 Phosphoribosyl synthetase-associated domain YPTB_RS10970 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPTB_RS10980 PF00288 GHMP kinases N terminal domain YPTB_RS10980 PF08544 GHMP kinases C terminal YPTB_RS10985 PF03550 Outer membrane lipoprotein LolB YPTB_RS10990 PF01488 Shikimate / quinate 5-dehydrogenase YPTB_RS10990 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPTB_RS10990 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPTB_RS10995 PF00472 RF-1 domain YPTB_RS10995 PF03462 PCRF domain YPTB_RS11000 PF13847 Methyltransferase domain YPTB_RS11000 PF17827 PrmC N-terminal domain YPTB_RS11005 PF04247 Invasion gene expression up-regulator, SirB YPTB_RS11010 PF13369 Transglutaminase-like superfamily YPTB_RS11015 PF00793 DAHP synthetase I family YPTB_RS11020 PF01797 Transposase IS200 like YPTB_RS11025 PF00916 Sulfate permease family YPTB_RS11025 PF01740 STAS domain YPTB_RS11040 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB_RS11055 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS11060 PF00005 ABC transporter YPTB_RS11060 PF08402 TOBE domain YPTB_RS11065 PF03009 Glycerophosphoryl diester phosphodiesterase family YPTB_RS11070 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPTB_RS11070 PF00480 ROK family YPTB_RS11080 PF02811 PHP domain YPTB_RS11085 PF02613 Nitrate reductase delta subunit YPTB_RS11090 PF07273 Protein of unknown function (DUF1439) YPTB_RS11095 PF07690 Major Facilitator Superfamily YPTB_RS11100 PF13302 Acetyltransferase (GNAT) domain YPTB_RS11105 PF04337 Protein of unknown function, DUF480 YPTB_RS11110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB_RS11115 PF03023 Lipid II flippase MurJ YPTB_RS11120 PF08479 POTRA domain, ShlB-type YPTB_RS11120 PF17287 POTRA domain YPTB_RS11120 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB_RS11125 PF05860 haemagglutination activity domain YPTB_RS11125 PF13332 Hemagglutinin repeat YPTB_RS11130 PF00750 tRNA synthetases class I (R) YPTB_RS11130 PF05746 DALR anticodon binding domain YPTB_RS11130 PF03485 Arginyl tRNA synthetase N terminal domain YPTB_RS11135 PF06185 YecM protein YPTB_RS11140 PF03932 CutC family YPTB_RS11145 PF08003 Protein of unknown function (DUF1698) YPTB_RS11150 PF13649 Methyltransferase domain YPTB_RS11155 PF01124 MAPEG family YPTB_RS11160 PF01904 Protein of unknown function DUF72 YPTB_RS11165 PF01336 OB-fold nucleic acid binding domain YPTB_RS11165 PF02938 GAD domain YPTB_RS11165 PF00152 tRNA synthetases class II (D, K and N) YPTB_RS11170 PF00293 NUDIX domain YPTB_RS11175 PF01709 Transcriptional regulator YPTB_RS11180 PF02075 Crossover junction endodeoxyribonuclease RuvC YPTB_RS11185 PF07499 RuvA, C-terminal domain YPTB_RS11185 PF01330 RuvA N terminal domain YPTB_RS11190 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPTB_RS11190 PF05491 RuvB C-terminal winged helix domain YPTB_RS11190 PF17864 RuvB AAA lid domain YPTB_RS11195 PF00950 ABC 3 transport family YPTB_RS11200 PF00005 ABC transporter YPTB_RS11205 PF01297 Zinc-uptake complex component A periplasmic YPTB_RS11210 PF01551 Peptidase family M23 YPTB_RS11210 PF01476 LysM domain YPTB_RS11210 PF08525 Opacity-associated protein A N-terminal motif YPTB_RS11215 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTB_RS11220 PF02887 Pyruvate kinase, alpha/beta domain YPTB_RS11220 PF00224 Pyruvate kinase, barrel domain YPTB_RS11225 PF01418 Helix-turn-helix domain, rpiR family YPTB_RS11225 PF01380 SIS domain YPTB_RS11230 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPTB_RS11230 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPTB_RS11240 PF01081 KDPG and KHG aldolase YPTB_RS11245 PF00893 Small Multidrug Resistance protein YPTB_RS11250 PF00893 Small Multidrug Resistance protein YPTB_RS11255 PF01042 Endoribonuclease L-PSP YPTB_RS11260 PF04851 Type III restriction enzyme, res subunit YPTB_RS11260 PF13307 Helicase C-terminal domain YPTB_RS11265 PF00814 Glycoprotease family YPTB_RS11270 PF03843 Outer membrane lipoprotein Slp family YPTB_RS11275 PF00501 AMP-binding enzyme YPTB_RS11275 PF13193 AMP-binding enzyme C-terminal domain YPTB_RS11280 PF01612 3'-5' exonuclease YPTB_RS11280 PF00570 HRDC domain YPTB_RS11285 PF03776 Septum formation topological specificity factor MinE YPTB_RS11290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPTB_RS11295 PF03775 Septum formation inhibitor MinC, C-terminal domain YPTB_RS11295 PF05209 Septum formation inhibitor MinC, N-terminal domain YPTB_RS11300 PF05166 YcgL domain YPTB_RS11305 PF13406 Transglycosylase SLT domain YPTB_RS11310 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPTB_RS11315 PF03692 Putative zinc- or iron-chelating domain YPTB_RS11325 PF00266 Aminotransferase class-V YPTB_RS11340 PF02600 Disulfide bond formation protein DsbB YPTB_RS11345 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPTB_RS11350 PF07840 FadR C-terminal domain YPTB_RS11350 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS11355 PF04293 SpoVR like protein YPTB_RS11360 PF01266 FAD dependent oxidoreductase YPTB_RS11365 PF07690 Major Facilitator Superfamily YPTB_RS11370 PF05726 Pirin C-terminal cupin domain YPTB_RS11370 PF02678 Pirin YPTB_RS11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS11375 PF03466 LysR substrate binding domain YPTB_RS11385 PF04285 Protein of unknown function (DUF444) YPTB_RS11390 PF08298 PrkA AAA domain YPTB_RS11390 PF06798 PrkA serine protein kinase C-terminal domain YPTB_RS11395 PF06629 MltA-interacting protein MipA YPTB_RS11400 PF01263 Aldose 1-epimerase YPTB_RS11405 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTB_RS11405 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPTB_RS11410 PF01641 SelR domain YPTB_RS11415 PF07023 Protein of unknown function (DUF1315) YPTB_RS11420 PF00857 Isochorismatase family YPTB_RS11425 PF00710 Asparaginase, N-terminal YPTB_RS11425 PF17763 Glutaminase/Asparaginase C-terminal domain YPTB_RS11430 PF01343 Peptidase family S49 YPTB_RS11435 PF00881 Nitroreductase family YPTB_RS11440 PF02769 AIR synthase related protein, C-terminal domain YPTB_RS11440 PF00586 AIR synthase related protein, N-terminal domain YPTB_RS11445 PF01131 DNA topoisomerase YPTB_RS11445 PF01751 Toprim domain YPTB_RS11450 PF07383 Protein of unknown function (DUF1496) YPTB_RS11455 PF00293 NUDIX domain YPTB_RS11460 PF03372 Endonuclease/Exonuclease/phosphatase family YPTB_RS11465 PF03466 LysR substrate binding domain YPTB_RS11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS11470 PF00872 Transposase, Mutator family YPTB_RS11485 PF00551 Formyl transferase YPTB_RS11485 PF01842 ACT domain YPTB_RS11490 PF02810 SEC-C motif YPTB_RS11495 PF00072 Response regulator receiver domain YPTB_RS11500 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPTB_RS11500 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPTB_RS11500 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPTB_RS11505 PF00816 H-NS histone family YPTB_RS11510 PF00265 Thymidine kinase YPTB_RS11515 PF00465 Iron-containing alcohol dehydrogenase YPTB_RS11515 PF00171 Aldehyde dehydrogenase family YPTB_RS11520 PF01914 MarC family integral membrane protein YPTB_RS11525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB_RS11530 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS11535 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB_RS11535 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS11540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB_RS11540 PF00005 ABC transporter YPTB_RS11545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB_RS11545 PF00005 ABC transporter YPTB_RS11555 PF04269 Protein of unknown function, DUF440 YPTB_RS11560 PF13091 PLD-like domain YPTB_RS11560 PF13396 Phospholipase_D-nuclease N-terminal YPTB_RS11565 PF13505 Outer membrane protein beta-barrel domain YPTB_RS11575 PF03795 YCII-related domain YPTB_RS11580 PF03544 Gram-negative bacterial TonB protein C-terminal YPTB_RS11585 PF03061 Thioesterase superfamily YPTB_RS11590 PF04279 Intracellular septation protein A YPTB_RS11610 PF03922 OmpW family YPTB_RS11620 PF00290 Tryptophan synthase alpha chain YPTB_RS11625 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS11630 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPTB_RS11630 PF00218 Indole-3-glycerol phosphate synthase YPTB_RS11635 PF02885 Glycosyl transferase family, helical bundle domain YPTB_RS11635 PF00591 Glycosyl transferase family, a/b domain YPTB_RS11640 PF00117 Glutamine amidotransferase class-I YPTB_RS11645 PF00425 chorismate binding enzyme YPTB_RS11645 PF04715 Anthranilate synthase component I, N terminal region YPTB_RS11660 PF02811 PHP domain YPTB_RS11665 PF01300 Telomere recombination YPTB_RS11670 PF01479 S4 domain YPTB_RS11670 PF00849 RNA pseudouridylate synthase YPTB_RS11675 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPTB_RS11680 PF00106 short chain dehydrogenase YPTB_RS11685 PF01343 Peptidase family S49 YPTB_RS11685 PF08496 Peptidase family S49 N-terminal YPTB_RS11690 PF10692 Protein of unknown function (DUF2498) YPTB_RS11700 PF01131 DNA topoisomerase YPTB_RS11700 PF01751 Toprim domain YPTB_RS11700 PF01396 Topoisomerase DNA binding C4 zinc finger YPTB_RS11700 PF08272 Topoisomerase I zinc-ribbon-like YPTB_RS11705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS11705 PF03466 LysR substrate binding domain YPTB_RS11715 PF00694 Aconitase C-terminal domain YPTB_RS11715 PF00330 Aconitase family (aconitate hydratase) YPTB_RS11720 PF00925 GTP cyclohydrolase II YPTB_RS11725 PF01569 PAP2 superfamily YPTB_RS11730 PF06305 Lipopolysaccharide assembly protein A domain YPTB_RS11735 PF18073 Rubredoxin metal binding domain YPTB_RS11745 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPTB_RS11750 PF01253 Translation initiation factor SUI1 YPTB_RS11755 PF05433 Glycine zipper 2TM domain YPTB_RS11760 PF00596 Class II Aldolase and Adducin N-terminal domain YPTB_RS11770 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPTB_RS11775 PF04328 Selenoprotein, putative YPTB_RS11780 PF13722 5TM C-terminal transporter carbon starvation CstA YPTB_RS11780 PF02554 Carbon starvation protein CstA YPTB_RS11785 PF17876 Cold shock domain YPTB_RS11785 PF08206 Ribonuclease B OB domain YPTB_RS11785 PF00773 RNB domain YPTB_RS11785 PF00575 S1 RNA binding domain YPTB_RS11790 PF07690 Major Facilitator Superfamily YPTB_RS11795 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS11800 PF10576 Iron-sulfur binding domain of endonuclease III YPTB_RS11800 PF00633 Helix-hairpin-helix motif YPTB_RS11800 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTB_RS11805 PF02508 Rnf-Nqr subunit, membrane protein YPTB_RS11810 PF04205 FMN-binding domain YPTB_RS11815 PF03116 NQR2, RnfD, RnfE family YPTB_RS11820 PF12833 Helix-turn-helix domain YPTB_RS11820 PF06445 GyrI-like small molecule binding domain YPTB_RS11825 PF13237 4Fe-4S dicluster domain YPTB_RS11825 PF13375 RnfC Barrel sandwich hybrid domain YPTB_RS11825 PF10531 SLBB domain YPTB_RS11825 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPTB_RS11830 PF04060 Putative Fe-S cluster YPTB_RS11835 PF02508 Rnf-Nqr subunit, membrane protein YPTB_RS11840 PF10754 Protein of unknown function (DUF2569) YPTB_RS11845 PF00664 ABC transporter transmembrane region YPTB_RS11845 PF00005 ABC transporter YPTB_RS11845 PF03412 Peptidase C39 family YPTB_RS11850 PF13533 Biotin-lipoyl like YPTB_RS11855 PF00005 ABC transporter YPTB_RS11855 PF03412 Peptidase C39 family YPTB_RS11855 PF00664 ABC transporter transmembrane region YPTB_RS11860 PF02610 L-arabinose isomerase YPTB_RS11860 PF11762 L-arabinose isomerase C-terminal domain YPTB_RS11865 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS11870 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB_RS11875 PF00005 ABC transporter YPTB_RS11880 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS11885 PF02311 AraC-like ligand binding domain YPTB_RS11885 PF12833 Helix-turn-helix domain YPTB_RS11890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB_RS11890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB_RS11895 PF13593 SBF-like CPA transporter family (DUF4137) YPTB_RS11900 PF00962 Adenosine/AMP deaminase YPTB_RS11915 PF00367 phosphotransferase system, EIIB YPTB_RS11915 PF02378 Phosphotransferase system, EIIC YPTB_RS11915 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPTB_RS11920 PF07702 UTRA domain YPTB_RS11920 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS11925 PF06097 Bacterial protein of unknown function (DUF945) YPTB_RS11930 PF01238 Phosphomannose isomerase type I YPTB_RS11935 PF10415 Fumarase C C-terminus YPTB_RS11935 PF00206 Lyase YPTB_RS11940 PF05472 DNA replication terminus site-binding protein (Ter protein) YPTB_RS11945 PF07690 Major Facilitator Superfamily YPTB_RS11950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS11950 PF03466 LysR substrate binding domain YPTB_RS11955 PF00480 ROK family YPTB_RS11965 PF00654 Voltage gated chloride channel YPTB_RS11970 PF06649 Protein of unknown function (DUF1161) YPTB_RS11975 PF06932 Protein of unknown function (DUF1283) YPTB_RS11980 PF00106 short chain dehydrogenase YPTB_RS11985 PF01590 GAF domain YPTB_RS11985 PF02954 Bacterial regulatory protein, Fis family YPTB_RS11985 PF00158 Sigma-54 interaction domain YPTB_RS11990 PF00171 Aldehyde dehydrogenase family YPTB_RS12000 PF00892 EamA-like transporter family YPTB_RS12010 PF00155 Aminotransferase class I and II YPTB_RS12015 PF03553 Na+/H+ antiporter family YPTB_RS12020 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS12030 PF13407 Periplasmic binding protein domain YPTB_RS12035 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS12040 PF00005 ABC transporter YPTB_RS12050 PF09084 NMT1/THI5 like YPTB_RS12055 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS12060 PF00005 ABC transporter YPTB_RS12065 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPTB_RS12065 PF01048 Phosphorylase superfamily YPTB_RS12090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB_RS12090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB_RS12090 PF00205 Thiamine pyrophosphate enzyme, central domain YPTB_RS12095 PF01842 ACT domain YPTB_RS12100 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS12115 PF00245 Alkaline phosphatase YPTB_RS12120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPTB_RS12120 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPTB_RS12125 PF13545 Crp-like helix-turn-helix domain YPTB_RS12125 PF00027 Cyclic nucleotide-binding domain YPTB_RS12130 PF00582 Universal stress protein family YPTB_RS12135 PF02233 NAD(P) transhydrogenase beta subunit YPTB_RS12140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPTB_RS12140 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPTB_RS12140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPTB_RS12150 PF07338 Protein of unknown function (DUF1471) YPTB_RS12155 PF13520 Amino acid permease YPTB_RS12165 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS12165 PF00072 Response regulator receiver domain YPTB_RS12170 PF00672 HAMP domain YPTB_RS12170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS12170 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS12175 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPTB_RS12180 PF14431 YwqJ-like deaminase YPTB_RS12180 PF18807 Tripartite Tc toxins repeat YPTB_RS12190 PF04264 YceI-like domain YPTB_RS12195 PF01292 Prokaryotic cytochrome b561 YPTB_RS12210 PF00089 Trypsin YPTB_RS12225 PF04408 Helicase associated domain (HA2) YPTB_RS12225 PF00270 DEAD/DEAH box helicase YPTB_RS12225 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPTB_RS12225 PF00271 Helicase conserved C-terminal domain YPTB_RS12225 PF11898 Domain of unknown function (DUF3418) YPTB_RS12230 PF02525 Flavodoxin-like fold YPTB_RS12235 PF00325 Bacterial regulatory proteins, crp family YPTB_RS12235 PF04198 Putative sugar-binding domain YPTB_RS12240 PF08125 Mannitol dehydrogenase C-terminal domain YPTB_RS12240 PF01232 Mannitol dehydrogenase Rossmann domain YPTB_RS12245 PF07027 Protein of unknown function (DUF1318) YPTB_RS12250 PF13617 YnbE-like lipoprotein YPTB_RS12255 PF11739 Dicarboxylate transport YPTB_RS12260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB_RS12260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB_RS12265 PF03724 META domain YPTB_RS12270 PF03891 Domain of unknown function (DUF333) YPTB_RS12275 PF02308 MgtC family YPTB_RS12280 PF00893 Small Multidrug Resistance protein YPTB_RS12285 PF10371 Domain of unknown function YPTB_RS12285 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPTB_RS12285 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPTB_RS12285 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPTB_RS12285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB_RS12290 PF01171 PP-loop family YPTB_RS12295 PF07859 alpha/beta hydrolase fold YPTB_RS12305 PF01544 CorA-like Mg2+ transporter protein YPTB_RS12310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB_RS12315 PF00246 Zinc carboxypeptidase YPTB_RS12320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPTB_RS12320 PF13378 Enolase C-terminal domain-like YPTB_RS12325 PF08534 Redoxin YPTB_RS12330 PF00158 Sigma-54 interaction domain YPTB_RS12330 PF18024 Helix-turn-helix domain YPTB_RS12335 PF09722 Protein of unknown function (DUF2384) YPTB_RS12340 PF08808 RES domain YPTB_RS12345 PF05128 Domain of unknown function (DUF697) YPTB_RS12350 PF04317 YcjX-like family, DUF463 YPTB_RS12360 PF04024 PspC domain YPTB_RS12365 PF06667 Phage shock protein B YPTB_RS12370 PF04012 PspA/IM30 family YPTB_RS12375 PF00158 Sigma-54 interaction domain YPTB_RS12375 PF02954 Bacterial regulatory protein, Fis family YPTB_RS12385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB_RS12390 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS12395 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB_RS12395 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS12400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB_RS12400 PF00005 ABC transporter YPTB_RS12405 PF00005 ABC transporter YPTB_RS12415 PF00854 POT family YPTB_RS12420 PF04893 Yip1 domain YPTB_RS12425 PF11656 YjbD family (DUF3811) YPTB_RS12430 PF02798 Glutathione S-transferase, N-terminal domain YPTB_RS12430 PF00043 Glutathione S-transferase, C-terminal domain YPTB_RS12435 PF08543 Phosphomethylpyrimidine kinase YPTB_RS12440 PF00579 tRNA synthetases class I (W and Y) YPTB_RS12440 PF01479 S4 domain YPTB_RS12445 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPTB_RS12445 PF01243 Pyridoxamine 5'-phosphate oxidase YPTB_RS12450 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPTB_RS12455 PF03702 Anhydro-N-acetylmuramic acid kinase YPTB_RS12460 PF05433 Glycine zipper 2TM domain YPTB_RS12465 PF01047 MarR family YPTB_RS12470 PF00248 Aldo/keto reductase family YPTB_RS12475 PF06945 Protein of unknown function (DUF1289) YPTB_RS12480 PF08019 Phosphoethanolamine transferase EptA/EptB YPTB_RS12480 PF00884 Sulfatase YPTB_RS12485 PF00440 Bacterial regulatory proteins, tetR family YPTB_RS12485 PF16925 Tetracyclin repressor-like, C-terminal domain YPTB_RS12490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTB_RS12495 PF14431 YwqJ-like deaminase YPTB_RS12495 PF18807 Tripartite Tc toxins repeat YPTB_RS12500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPTB_RS12505 PF00929 Exonuclease YPTB_RS12510 PF00462 Glutaredoxin YPTB_RS12520 PF00877 NlpC/P60 family YPTB_RS12525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPTB_RS12525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPTB_RS12530 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS12535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS12535 PF03466 LysR substrate binding domain YPTB_RS12540 PF07690 Major Facilitator Superfamily YPTB_RS12550 PF00677 Lumazine binding domain YPTB_RS12555 PF01554 MatE YPTB_RS12575 PF02887 Pyruvate kinase, alpha/beta domain YPTB_RS12575 PF00224 Pyruvate kinase, barrel domain YPTB_RS12580 PF04728 Lipoprotein leucine-zipper YPTB_RS12585 PF17969 L,D-transpeptidase C-terminal domain YPTB_RS12585 PF03734 L,D-transpeptidase catalytic domain YPTB_RS12585 PF01476 LysM domain YPTB_RS12590 PF02657 Fe-S metabolism associated domain YPTB_RS12595 PF00266 Aminotransferase class-V YPTB_RS12600 PF01458 Uncharacterized protein family (UPF0051) YPTB_RS12605 PF00005 ABC transporter YPTB_RS12610 PF01458 Uncharacterized protein family (UPF0051) YPTB_RS12615 PF01521 Iron-sulphur cluster biosynthesis YPTB_RS12625 PF03061 Thioesterase superfamily YPTB_RS12630 PF02913 FAD linked oxidases, C-terminal domain YPTB_RS12630 PF01565 FAD binding domain YPTB_RS12630 PF13183 4Fe-4S dicluster domain YPTB_RS12635 PF01594 AI-2E family transporter YPTB_RS12640 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPTB_RS12640 PF02896 PEP-utilising enzyme, TIM barrel domain YPTB_RS12640 PF00391 PEP-utilising enzyme, mobile domain YPTB_RS12645 PF03618 Kinase/pyrophosphorylase YPTB_RS12650 PF00793 DAHP synthetase I family YPTB_RS12655 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPTB_RS12660 PF03099 Biotin/lipoate A/B protein ligase family YPTB_RS12660 PF10437 Bacterial lipoate protein ligase C-terminus YPTB_RS12665 PF00877 NlpC/P60 family YPTB_RS12675 PF00892 EamA-like transporter family YPTB_RS12680 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPTB_RS12685 PF01522 Polysaccharide deacetylase YPTB_RS12690 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS12690 PF02911 Formyl transferase, C-terminal domain YPTB_RS12690 PF00551 Formyl transferase YPTB_RS12695 PF00535 Glycosyl transferase family 2 YPTB_RS12700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPTB_RS12705 PF00005 ABC transporter YPTB_RS12710 PF00255 Glutathione peroxidase YPTB_RS12715 PF01032 FecCD transport family YPTB_RS12725 PF00216 Bacterial DNA-binding protein YPTB_RS12730 PF01588 Putative tRNA binding domain YPTB_RS12730 PF03147 Ferredoxin-fold anticodon binding domain YPTB_RS12730 PF03483 B3/4 domain YPTB_RS12730 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPTB_RS12730 PF03484 tRNA synthetase B5 domain YPTB_RS12735 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPTB_RS12735 PF01409 tRNA synthetases class II core domain (F) YPTB_RS12740 PF00453 Ribosomal protein L20 YPTB_RS12745 PF01632 Ribosomal protein L35 YPTB_RS12750 PF00707 Translation initiation factor IF-3, C-terminal domain YPTB_RS12750 PF05198 Translation initiation factor IF-3, N-terminal domain YPTB_RS12755 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTB_RS12755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPTB_RS12755 PF02824 TGS domain YPTB_RS12755 PF03129 Anticodon binding domain YPTB_RS12760 PF13619 KTSC domain YPTB_RS12775 PF01914 MarC family integral membrane protein YPTB_RS12780 PF01464 Transglycosylase SLT domain YPTB_RS12785 PF01297 Zinc-uptake complex component A periplasmic YPTB_RS12790 PF00005 ABC transporter YPTB_RS12795 PF00950 ABC 3 transport family YPTB_RS12800 PF00950 ABC 3 transport family YPTB_RS12810 PF03881 Fructosamine kinase YPTB_RS12815 PF14002 YniB-like protein YPTB_RS12820 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS12825 PF07883 Cupin domain YPTB_RS12830 PF04962 KduI/IolB family YPTB_RS12840 PF06917 Periplasmic pectate lyase YPTB_RS12845 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS12850 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS12855 PF03459 TOBE domain YPTB_RS12855 PF17912 MalK OB fold domain YPTB_RS12855 PF00005 ABC transporter YPTB_RS12860 PF01547 Bacterial extracellular solute-binding protein YPTB_RS12865 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPTB_RS12870 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPTB_RS12875 PF00375 Sodium:dicarboxylate symporter family YPTB_RS12880 PF01510 N-acetylmuramoyl-L-alanine amidase YPTB_RS12885 PF09339 IclR helix-turn-helix domain YPTB_RS12885 PF01614 Bacterial transcriptional regulator YPTB_RS12890 PF14583 Oligogalacturonate lyase YPTB_RS12895 PF07690 Major Facilitator Superfamily YPTB_RS12900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS12900 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS12910 PF00577 Outer membrane usher protein YPTB_RS12910 PF13954 PapC N-terminal domain YPTB_RS12910 PF13953 PapC C-terminal domain YPTB_RS12915 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS12915 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS12920 PF00419 Fimbrial protein YPTB_RS12925 PF01435 Peptidase family M48 YPTB_RS12930 PF11818 C-terminal domain of tail specific protease (DUF3340) YPTB_RS12930 PF00595 PDZ domain YPTB_RS12930 PF17804 Tail specific protease N-terminal domain YPTB_RS12930 PF03572 Peptidase family S41 YPTB_RS12935 PF04352 ProQ/FINO family YPTB_RS12935 PF17516 ProQ C-terminal domain YPTB_RS12940 PF13185 GAF domain YPTB_RS12945 PF04403 Paraquat-inducible protein A YPTB_RS12950 PF02470 MlaD protein YPTB_RS12985 PF07351 Protein of unknown function (DUF1480) YPTB_RS13015 PF01168 Alanine racemase, N-terminal domain YPTB_RS13015 PF00842 Alanine racemase, C-terminal domain YPTB_RS13025 PF03895 YadA-like membrane anchor domain YPTB_RS13025 PF05658 Head domain of trimeric autotransporter adhesin YPTB_RS13025 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTB_RS13025 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS13025 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS13025 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTB_RS13025 PF05658 Head domain of trimeric autotransporter adhesin YPTB_RS13025 PF03895 YadA-like membrane anchor domain YPTB_RS13030 PF01510 N-acetylmuramoyl-L-alanine amidase YPTB_RS13040 PF04344 Chemotaxis phosphatase, CheZ YPTB_RS13045 PF00072 Response regulator receiver domain YPTB_RS13050 PF00072 Response regulator receiver domain YPTB_RS13050 PF01339 CheB methylesterase YPTB_RS13055 PF03705 CheR methyltransferase, all-alpha domain YPTB_RS13055 PF01739 CheR methyltransferase, SAM binding domain YPTB_RS13060 PF02203 Tar ligand binding domain homologue YPTB_RS13060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB_RS13060 PF00672 HAMP domain YPTB_RS13065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB_RS13065 PF00672 HAMP domain YPTB_RS13065 PF02203 Tar ligand binding domain homologue YPTB_RS13080 PF01584 CheW-like domain YPTB_RS13085 PF01584 CheW-like domain YPTB_RS13085 PF09078 CheY binding YPTB_RS13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS13085 PF02895 Signal transducing histidine kinase, homodimeric domain YPTB_RS13085 PF01627 Hpt domain YPTB_RS13090 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPTB_RS13090 PF00691 OmpA family YPTB_RS13095 PF01618 MotA/TolQ/ExbB proton channel family YPTB_RS13105 PF05247 Flagellar transcriptional activator (FlhD) YPTB_RS13110 PF00690 Cation transporter/ATPase, N-terminus YPTB_RS13110 PF00689 Cation transporting ATPase, C-terminus YPTB_RS13115 PF02308 MgtC family YPTB_RS13125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB_RS13125 PF02203 Tar ligand binding domain homologue YPTB_RS13125 PF00672 HAMP domain YPTB_RS13130 PF10781 Dextransucrase DSRB YPTB_RS13135 PF00313 'Cold-shock' DNA-binding domain YPTB_RS13140 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPTB_RS13140 PF02929 Beta galactosidase small chain YPTB_RS13140 PF16353 Domain of unknown function(DUF4981) YPTB_RS13140 PF00703 Glycosyl hydrolases family 2 YPTB_RS13140 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPTB_RS13145 PF00107 Zinc-binding dehydrogenase YPTB_RS13145 PF00698 Acyl transferase domain YPTB_RS13145 PF08240 Alcohol dehydrogenase GroES-like domain YPTB_RS13145 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB_RS13145 PF08659 KR domain YPTB_RS13145 PF16197 Ketoacyl-synthetase C-terminal extension YPTB_RS13145 PF00550 Phosphopantetheine attachment site YPTB_RS13145 PF14765 Polyketide synthase dehydratase YPTB_RS13145 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB_RS13150 PF10777 Inner membrane protein YlaC YPTB_RS13155 PF01037 Lrp/AsnC ligand binding domain YPTB_RS13155 PF13404 AsnC-type helix-turn-helix domain YPTB_RS13165 PF14001 YdfZ protein YPTB_RS13170 PF00328 Histidine phosphatase superfamily (branch 2) YPTB_RS13180 PF01638 HxlR-like helix-turn-helix YPTB_RS13185 PF05368 NmrA-like family YPTB_RS13190 PF08447 PAS fold YPTB_RS13190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB_RS13200 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS13200 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB_RS13205 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTB_RS13210 PF00849 RNA pseudouridylate synthase YPTB_RS13215 PF00293 NUDIX domain YPTB_RS13225 PF04356 Protein of unknown function (DUF489) YPTB_RS13230 PF08328 Adenylosuccinate lyase C-terminal YPTB_RS13230 PF00206 Lyase YPTB_RS13240 PF00072 Response regulator receiver domain YPTB_RS13240 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS13245 PF08918 PhoQ Sensor YPTB_RS13245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS13250 PF08007 Cupin superfamily protein YPTB_RS13255 PF01546 Peptidase family M20/M25/M40 YPTB_RS13255 PF07687 Peptidase dimerisation domain YPTB_RS13260 PF02146 Sir2 family YPTB_RS13265 PF00480 ROK family YPTB_RS13270 PF12704 MacB-like periplasmic core domain YPTB_RS13270 PF02687 FtsX-like permease family YPTB_RS13275 PF00005 ABC transporter YPTB_RS13280 PF12704 MacB-like periplasmic core domain YPTB_RS13280 PF02687 FtsX-like permease family YPTB_RS13285 PF00271 Helicase conserved C-terminal domain YPTB_RS13285 PF17757 UvrB interaction domain YPTB_RS13285 PF03461 TRCF domain YPTB_RS13285 PF02559 CarD-like/TRCF domain YPTB_RS13285 PF00270 DEAD/DEAH box helicase YPTB_RS13290 PF05433 Glycine zipper 2TM domain YPTB_RS13305 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS13310 PF05728 Uncharacterised protein family (UPF0227) YPTB_RS13315 PF00933 Glycosyl hydrolase family 3 N terminal domain YPTB_RS13320 PF01636 Phosphotransferase enzyme family YPTB_RS13325 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPTB_RS13325 PF13036 Peptidoglycan-synthase activator LpoB YPTB_RS13330 PF07233 Protein of unknown function (DUF1425) YPTB_RS13335 PF01230 HIT domain YPTB_RS13340 PF08501 Shikimate dehydrogenase substrate binding domain YPTB_RS13390 PF00367 phosphotransferase system, EIIB YPTB_RS13390 PF02378 Phosphotransferase system, EIIC YPTB_RS13395 PF01026 TatD related DNase YPTB_RS13400 PF09115 DNA polymerase III, delta subunit, C terminal YPTB_RS13405 PF02223 Thymidylate kinase YPTB_RS13410 PF02618 YceG-like family YPTB_RS13415 PF01063 Amino-transferase class IV YPTB_RS13420 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB_RS13420 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB_RS13425 PF00550 Phosphopantetheine attachment site YPTB_RS13435 PF00698 Acyl transferase domain YPTB_RS13440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPTB_RS13440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPTB_RS13445 PF02504 Fatty acid synthesis protein YPTB_RS13450 PF01783 Ribosomal L32p protein family YPTB_RS13455 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPTB_RS13460 PF02545 Maf-like protein YPTB_RS13465 PF00849 RNA pseudouridylate synthase YPTB_RS13465 PF01479 S4 domain YPTB_RS13470 PF00575 S1 RNA binding domain YPTB_RS13470 PF12111 Polyribonucleotide phosphorylase C terminal YPTB_RS13470 PF10150 Ribonuclease E/G family YPTB_RS13475 PF03992 Antibiotic biosynthesis monooxygenase YPTB_RS13480 PF01979 Amidohydrolase family YPTB_RS13485 PF06183 DinI-like family YPTB_RS13495 PF13991 BssS protein family YPTB_RS13500 PF01266 FAD dependent oxidoreductase YPTB_RS13505 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS13510 PF01594 AI-2E family transporter YPTB_RS13515 PF12368 Rhodanase C-terminal YPTB_RS13515 PF17773 UPF0176 acylphosphatase like domain YPTB_RS13515 PF00581 Rhodanese-like domain YPTB_RS13535 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTB_RS13540 PF00854 POT family YPTB_RS13545 PF07119 Protein of unknown function (DUF1375) YPTB_RS13550 PF00535 Glycosyl transferase family 2 YPTB_RS13555 PF04349 Periplasmic glucan biosynthesis protein, MdoG YPTB_RS13565 PF00999 Sodium/hydrogen exchanger family YPTB_RS13565 PF02080 TrkA-C domain YPTB_RS13565 PF03471 Transporter associated domain YPTB_RS13575 PF00765 Autoinducer synthase YPTB_RS13580 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS13580 PF03472 Autoinducer binding domain YPTB_RS13585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS13585 PF03466 LysR substrate binding domain YPTB_RS13595 PF00083 Sugar (and other) transporter YPTB_RS13605 PF00248 Aldo/keto reductase family YPTB_RS13610 PF09618 CRISPR-associated protein (Cas_Csy4) YPTB_RS13615 PF09615 CRISPR-associated protein (Cas_Csy3) YPTB_RS13620 PF09614 CRISPR-associated protein (Cas_Csy2) YPTB_RS13625 PF09611 CRISPR-associated protein (Cas_Csy1) YPTB_RS13635 PF01867 CRISPR associated protein Cas1 YPTB_RS13640 PF00924 Mechanosensitive ion channel YPTB_RS13660 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPTB_RS13665 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS13670 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS13680 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS13685 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTB_RS13685 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTB_RS13685 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTB_RS13685 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTB_RS13690 PF17912 MalK OB fold domain YPTB_RS13690 PF00005 ABC transporter YPTB_RS13705 PF05594 Haemagluttinin repeat YPTB_RS13705 PF13332 Hemagglutinin repeat YPTB_RS13705 PF05860 haemagglutination activity domain YPTB_RS13705 PF15526 Novel toxin 21 YPTB_RS13705 PF04829 Pre-toxin domain with VENN motif YPTB_RS13725 PF04829 Pre-toxin domain with VENN motif YPTB_RS13725 PF05860 haemagglutination activity domain YPTB_RS13725 PF13332 Hemagglutinin repeat YPTB_RS13725 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS13730 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB_RS13730 PF17287 POTRA domain YPTB_RS13730 PF08479 POTRA domain, ShlB-type YPTB_RS13735 PF00175 Oxidoreductase NAD-binding domain YPTB_RS13735 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB_RS13735 PF00970 Oxidoreductase FAD-binding domain YPTB_RS13740 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPTB_RS13740 PF00355 Rieske [2Fe-2S] domain YPTB_RS13745 PF02028 BCCT, betaine/carnitine/choline family transporter YPTB_RS13750 PF00180 Isocitrate/isopropylmalate dehydrogenase YPTB_RS13755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS13755 PF03466 LysR substrate binding domain YPTB_RS13760 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS13765 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS13770 PF00005 ABC transporter YPTB_RS13775 PF13407 Periplasmic binding protein domain YPTB_RS13780 PF08240 Alcohol dehydrogenase GroES-like domain YPTB_RS13780 PF00107 Zinc-binding dehydrogenase YPTB_RS13800 PF13505 Outer membrane protein beta-barrel domain YPTB_RS13805 PF00892 EamA-like transporter family YPTB_RS13815 PF13649 Methyltransferase domain YPTB_RS13820 PF00210 Ferritin-like domain YPTB_RS13835 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS13840 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS13845 PF00005 ABC transporter YPTB_RS13850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB_RS13850 PF13426 PAS domain YPTB_RS13850 PF08447 PAS fold YPTB_RS13855 PF05971 RNA methyltransferase YPTB_RS13860 PF07338 Protein of unknown function (DUF1471) YPTB_RS13865 PF02885 Glycosyl transferase family, helical bundle domain YPTB_RS13870 PF13193 AMP-binding enzyme C-terminal domain YPTB_RS13870 PF00501 AMP-binding enzyme YPTB_RS13875 PF13378 Enolase C-terminal domain-like YPTB_RS13880 PF00378 Enoyl-CoA hydratase/isomerase YPTB_RS13885 PF12697 Alpha/beta hydrolase family YPTB_RS13890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPTB_RS13890 PF16582 Middle domain of thiamine pyrophosphate YPTB_RS13890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPTB_RS13895 PF00425 chorismate binding enzyme YPTB_RS13905 PF05957 Bacterial protein of unknown function (DUF883) YPTB_RS13920 PF00920 Dehydratase family YPTB_RS13925 PF03928 Haem-degrading YPTB_RS13930 PF07690 Major Facilitator Superfamily YPTB_RS13935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB_RS13935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB_RS13945 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS13950 PF02638 Glycosyl hydrolase-like 10 YPTB_RS13955 PF00106 short chain dehydrogenase YPTB_RS13960 PF01202 Shikimate kinase YPTB_RS13965 PF04074 YhcH/YjgK/YiaL YPTB_RS13975 PF00361 Proton-conducting membrane transporter YPTB_RS13980 PF00361 Proton-conducting membrane transporter YPTB_RS13985 PF00361 Proton-conducting membrane transporter YPTB_RS13985 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPTB_RS13990 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPTB_RS13995 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPTB_RS14000 PF12838 4Fe-4S dicluster domain YPTB_RS14005 PF00146 NADH dehydrogenase YPTB_RS14010 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPTB_RS14010 PF01568 Molydopterin dinucleotide binding domain YPTB_RS14010 PF00384 Molybdopterin oxidoreductase YPTB_RS14010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB_RS14015 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPTB_RS14015 PF10531 SLBB domain YPTB_RS14015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPTB_RS14025 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPTB_RS14025 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPTB_RS14030 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPTB_RS14035 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPTB_RS14040 PF03466 LysR substrate binding domain YPTB_RS14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS14050 PF00155 Aminotransferase class I and II YPTB_RS14065 PF02080 TrkA-C domain YPTB_RS14065 PF03600 Citrate transporter YPTB_RS14070 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS14075 PF03887 YfbU domain YPTB_RS14080 PF04217 Protein of unknown function, DUF412 YPTB_RS14090 PF00871 Acetokinase family YPTB_RS14095 PF01515 Phosphate acetyl/butaryl transferase YPTB_RS14095 PF07085 DRTGG domain YPTB_RS14100 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS14100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB_RS14105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB_RS14115 PF03611 PTS system sugar-specific permease component YPTB_RS14120 PF00293 NUDIX domain YPTB_RS14125 PF12850 Calcineurin-like phosphoesterase superfamily domain YPTB_RS14135 PF08338 Domain of unknown function (DUF1731) YPTB_RS14135 PF01370 NAD dependent epimerase/dehydratase family YPTB_RS14140 PF00005 ABC transporter YPTB_RS14145 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS14150 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS14155 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS14160 PF02441 Flavoprotein YPTB_RS14165 PF00156 Phosphoribosyl transferase domain YPTB_RS14170 PF02674 Colicin V production protein YPTB_RS14175 PF05036 Sporulation related domain YPTB_RS14180 PF02875 Mur ligase family, glutamate ligase domain YPTB_RS14180 PF08245 Mur ligase middle domain YPTB_RS14185 PF17848 Acetyl-coA carboxylase zinc finger domain YPTB_RS14185 PF01039 Carboxyl transferase domain YPTB_RS14190 PF09335 SNARE associated Golgi protein YPTB_RS14195 PF01416 tRNA pseudouridine synthase YPTB_RS14200 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTB_RS14200 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTB_RS14205 PF11890 Domain of unknown function (DUF3410) YPTB_RS14205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB_RS14205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB_RS14220 PF00892 EamA-like transporter family YPTB_RS14230 PF00419 Fimbrial protein YPTB_RS14235 PF01177 Asp/Glu/Hydantoin racemase YPTB_RS14240 PF02801 Beta-ketoacyl synthase, C-terminal domain YPTB_RS14240 PF00109 Beta-ketoacyl synthase, N-terminal domain YPTB_RS14245 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPTB_RS14245 PF01266 FAD dependent oxidoreductase YPTB_RS14250 PF08891 YfcL protein YPTB_RS14255 PF04315 Elongation factor P hydroxylase YPTB_RS14260 PF01925 Sulfite exporter TauE/SafE YPTB_RS14265 PF03411 Penicillin-insensitive murein endopeptidase YPTB_RS14270 PF01264 Chorismate synthase YPTB_RS14275 PF05175 Methyltransferase small domain YPTB_RS14280 PF01713 Smr domain YPTB_RS14285 PF00300 Histidine phosphatase superfamily (branch 1) YPTB_RS14290 PF00378 Enoyl-CoA hydratase/isomerase YPTB_RS14290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPTB_RS14290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPTB_RS14295 PF00108 Thiolase, N-terminal domain YPTB_RS14295 PF02803 Thiolase, C-terminal domain YPTB_RS14300 PF04175 Protein of unknown function (DUF406) YPTB_RS14305 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPTB_RS14310 PF04333 MlaA lipoprotein YPTB_RS14315 PF03918 Cytochrome C biogenesis protein YPTB_RS14320 PF03918 Cytochrome C biogenesis protein YPTB_RS14325 PF08534 Redoxin YPTB_RS14330 PF01578 Cytochrome C assembly protein YPTB_RS14330 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPTB_RS14335 PF03100 CcmE YPTB_RS14340 PF04995 Heme exporter protein D (CcmD) YPTB_RS14345 PF01578 Cytochrome C assembly protein YPTB_RS14350 PF03379 CcmB protein YPTB_RS14355 PF00005 ABC transporter YPTB_RS14370 PF04011 LemA family YPTB_RS14380 PF08274 PhnA Zinc-Ribbon YPTB_RS14380 PF03831 PhnA domain YPTB_RS14395 PF07024 ImpE protein YPTB_RS14410 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS14415 PF14331 ImcF-related N-terminal domain YPTB_RS14415 PF06744 Type VI secretion protein IcmF C-terminal YPTB_RS14415 PF06761 Intracellular multiplication and human macrophage-killing YPTB_RS14425 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPTB_RS14440 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPTB_RS14445 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPTB_RS14455 PF13954 PapC N-terminal domain YPTB_RS14455 PF00577 Outer membrane usher protein YPTB_RS14455 PF13953 PapC C-terminal domain YPTB_RS14460 PF13954 PapC N-terminal domain YPTB_RS14460 PF13953 PapC C-terminal domain YPTB_RS14460 PF00577 Outer membrane usher protein YPTB_RS14465 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS14465 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS14470 PF16970 Type-1 fimbrial protein, A YPTB_RS14475 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS14475 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS14475 PF17871 AAA lid domain YPTB_RS14475 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS14480 PF05947 Type VI secretion system, TssF YPTB_RS14525 PF13406 Transglycosylase SLT domain YPTB_RS14535 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS14540 PF00005 ABC transporter YPTB_RS14550 PF05638 Type VI secretion system effector, Hcp YPTB_RS14560 PF00384 Molybdopterin oxidoreductase YPTB_RS14560 PF01568 Molydopterin dinucleotide binding domain YPTB_RS14560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB_RS14565 PF13247 4Fe-4S dicluster domain YPTB_RS14565 PF12800 4Fe-4S binding domain YPTB_RS14570 PF04976 DMSO reductase anchor subunit (DmsC) YPTB_RS14575 PF02613 Nitrate reductase delta subunit YPTB_RS14585 PF05643 Putative bacterial lipoprotein (DUF799) YPTB_RS14595 PF03783 Curli production assembly/transport component CsgG YPTB_RS14605 PF01292 Prokaryotic cytochrome b561 YPTB_RS14610 PF00155 Aminotransferase class I and II YPTB_RS14615 PF07350 Protein of unknown function (DUF1479) YPTB_RS14620 PF02685 Glucokinase YPTB_RS14630 PF03466 LysR substrate binding domain YPTB_RS14630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS14635 PF00248 Aldo/keto reductase family YPTB_RS14645 PF01566 Natural resistance-associated macrophage protein YPTB_RS14650 PF07662 Na+ dependent nucleoside transporter C-terminus YPTB_RS14650 PF07670 Nucleoside recognition YPTB_RS14650 PF01773 Na+ dependent nucleoside transporter N-terminus YPTB_RS14675 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPTB_RS14700 PF12843 Putative quorum-sensing-regulated virulence factor YPTB_RS14705 PF00533 BRCA1 C Terminus (BRCT) domain YPTB_RS14705 PF12826 Helix-hairpin-helix motif YPTB_RS14705 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPTB_RS14705 PF03120 NAD-dependent DNA ligase OB-fold domain YPTB_RS14705 PF01653 NAD-dependent DNA ligase adenylation domain YPTB_RS14710 PF04354 ZipA, C-terminal FtsZ-binding domain YPTB_RS14720 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS14725 PF00381 PTS HPr component phosphorylation site YPTB_RS14730 PF05524 PEP-utilising enzyme, N-terminal YPTB_RS14730 PF00391 PEP-utilising enzyme, mobile domain YPTB_RS14730 PF02896 PEP-utilising enzyme, TIM barrel domain YPTB_RS14735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPTB_RS14740 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS14740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS14740 PF16527 Two-component sensor protein CpxA, periplasmic domain YPTB_RS14740 PF00672 HAMP domain YPTB_RS14745 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS14745 PF00072 Response regulator receiver domain YPTB_RS14750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS14755 PF00005 ABC transporter YPTB_RS14755 PF02687 FtsX-like permease family YPTB_RS14755 PF12704 MacB-like periplasmic core domain YPTB_RS14760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB_RS14760 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS14765 PF00474 Sodium:solute symporter family YPTB_RS14775 PF00557 Metallopeptidase family M24 YPTB_RS14780 PF00155 Aminotransferase class I and II YPTB_RS14790 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS14790 PF00672 HAMP domain YPTB_RS14790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS14795 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS14795 PF00072 Response regulator receiver domain YPTB_RS14805 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS14810 PF00005 ABC transporter YPTB_RS14815 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS14820 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS14830 PF07690 Major Facilitator Superfamily YPTB_RS14835 PF01380 SIS domain YPTB_RS14835 PF01418 Helix-turn-helix domain, rpiR family YPTB_RS14845 PF04074 YhcH/YjgK/YiaL YPTB_RS14850 PF00480 ROK family YPTB_RS14855 PF12468 Type III secretion system leucine rich repeat protein YPTB_RS14860 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPTB_RS14865 PF00701 Dihydrodipicolinate synthetase family YPTB_RS14870 PF04261 Dyp-type peroxidase family YPTB_RS14875 PF06572 Protein of unknown function (DUF1131) YPTB_RS14880 PF04076 Bacterial OB fold (BOF) protein YPTB_RS14885 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB_RS14885 PF03797 Autotransporter beta-domain YPTB_RS14885 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS14885 PF03212 Pertactin YPTB_RS14900 PF00583 Acetyltransferase (GNAT) family YPTB_RS14925 PF00583 Acetyltransferase (GNAT) family YPTB_RS14930 PF01218 Coproporphyrinogen III oxidase YPTB_RS14935 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPTB_RS14940 PF03949 Malic enzyme, NAD binding domain YPTB_RS14940 PF01515 Phosphate acetyl/butaryl transferase YPTB_RS14940 PF00390 Malic enzyme, N-terminal domain YPTB_RS14945 PF00293 NUDIX domain YPTB_RS14950 PF03264 NapC/NirT cytochrome c family, N-terminal region YPTB_RS14955 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPTB_RS14960 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPTB_RS14960 PF01568 Molydopterin dinucleotide binding domain YPTB_RS14960 PF00384 Molybdopterin oxidoreductase YPTB_RS14960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB_RS14965 PF03927 NapD protein YPTB_RS14970 PF12800 4Fe-4S binding domain YPTB_RS14970 PF13187 4Fe-4S dicluster domain YPTB_RS14970 PF00037 4Fe-4S binding domain YPTB_RS14975 PF00072 Response regulator receiver domain YPTB_RS14975 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS14985 PF00873 AcrB/AcrD/AcrF family YPTB_RS14995 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPTB_RS15000 PF04055 Radical SAM superfamily YPTB_RS15000 PF13186 Iron-sulfur cluster-binding domain YPTB_RS15005 PF00884 Sulfatase YPTB_RS15010 PF08402 TOBE domain YPTB_RS15010 PF00005 ABC transporter YPTB_RS15015 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS15030 PF03960 ArsC family YPTB_RS15035 PF07687 Peptidase dimerisation domain YPTB_RS15035 PF01546 Peptidase family M20/M25/M40 YPTB_RS15040 PF02557 D-alanyl-D-alanine carboxypeptidase YPTB_RS15045 PF13980 Uncharacterised protein family (UPF0370) YPTB_RS15050 PF13718 GNAT acetyltransferase 2 YPTB_RS15050 PF05127 Helicase YPTB_RS15050 PF17176 tRNA-binding domain YPTB_RS15050 PF08351 Domain of unknown function (DUF1726) YPTB_RS15055 PF04284 Protein of unknown function (DUF441) YPTB_RS15060 PF04228 Putative neutral zinc metallopeptidase YPTB_RS15065 PF01259 SAICAR synthetase YPTB_RS15070 PF06804 NlpB/DapX lipoprotein YPTB_RS15075 PF00701 Dihydrodipicolinate synthetase family YPTB_RS15080 PF01842 ACT domain YPTB_RS15085 PF00578 AhpC/TSA family YPTB_RS15105 PF01594 AI-2E family transporter YPTB_RS15110 PF01435 Peptidase family M48 YPTB_RS15110 PF07720 Tetratricopeptide repeat YPTB_RS15115 PF03960 ArsC family YPTB_RS15120 PF00308 Bacterial dnaA protein YPTB_RS15125 PF00860 Permease family YPTB_RS15135 PF00586 AIR synthase related protein, N-terminal domain YPTB_RS15135 PF02769 AIR synthase related protein, C-terminal domain YPTB_RS15140 PF00551 Formyl transferase YPTB_RS15145 PF13302 Acetyltransferase (GNAT) domain YPTB_RS15155 PF00005 ABC transporter YPTB_RS15160 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS15165 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS15170 PF13089 Polyphosphate kinase N-terminal domain YPTB_RS15170 PF17941 Polyphosphate kinase C-terminal domain 1 YPTB_RS15170 PF13090 Polyphosphate kinase C-terminal domain 2 YPTB_RS15170 PF02503 Polyphosphate kinase middle domain YPTB_RS15175 PF02541 Ppx/GppA phosphatase family YPTB_RS15185 PF01769 Divalent cation transporter YPTB_RS15185 PF00571 CBS domain YPTB_RS15185 PF03448 MgtE intracellular N domain YPTB_RS15190 PF00012 Hsp70 protein YPTB_RS15195 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS15200 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS15210 PF00202 Aminotransferase class-III YPTB_RS15215 PF00155 Aminotransferase class I and II YPTB_RS15215 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS15220 PF08402 TOBE domain YPTB_RS15220 PF00005 ABC transporter YPTB_RS15225 PF13533 Biotin-lipoyl like YPTB_RS15230 PF00873 AcrB/AcrD/AcrF family YPTB_RS15235 PF00873 AcrB/AcrD/AcrF family YPTB_RS15240 PF07690 Major Facilitator Superfamily YPTB_RS15245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS15245 PF00672 HAMP domain YPTB_RS15245 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS15250 PF00072 Response regulator receiver domain YPTB_RS15250 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS15255 PF07411 Domain of unknown function (DUF1508) YPTB_RS15260 PF01136 Peptidase family U32 YPTB_RS15260 PF16325 Peptidase family U32 C-terminal domain YPTB_RS15265 PF00781 Diacylglycerol kinase catalytic domain YPTB_RS15280 PF08543 Phosphomethylpyrimidine kinase YPTB_RS15320 PF05638 Type VI secretion system effector, Hcp YPTB_RS15325 PF00117 Glutamine amidotransferase class-I YPTB_RS15325 PF00958 GMP synthase C terminal domain YPTB_RS15325 PF02540 NAD synthase YPTB_RS15335 PF00478 IMP dehydrogenase / GMP reductase domain YPTB_RS15335 PF00571 CBS domain YPTB_RS15340 PF13742 OB-fold nucleic acid binding domain YPTB_RS15340 PF02601 Exonuclease VII, large subunit YPTB_RS15345 PF07191 zinc-ribbons YPTB_RS15355 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPTB_RS15355 PF01926 50S ribosome-binding GTPase YPTB_RS15360 PF13360 PQQ-like domain YPTB_RS15365 PF09976 Tetratricopeptide repeat-like domain YPTB_RS15370 PF13393 Histidyl-tRNA synthetase YPTB_RS15370 PF03129 Anticodon binding domain YPTB_RS15375 PF04551 GcpE protein YPTB_RS15380 PF13464 Domain of unknown function (DUF4115) YPTB_RS15390 PF04055 Radical SAM superfamily YPTB_RS15395 PF00334 Nucleoside diphosphate kinase YPTB_RS15410 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB_RS15410 PF03797 Autotransporter beta-domain YPTB_RS15410 PF03212 Pertactin YPTB_RS15415 PF03797 Autotransporter beta-domain YPTB_RS15415 PF03212 Pertactin YPTB_RS15415 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB_RS15420 PF03212 Pertactin YPTB_RS15420 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPTB_RS15420 PF03797 Autotransporter beta-domain YPTB_RS15425 PF14581 SseB protein C-terminal domain YPTB_RS15425 PF07179 SseB protein N-terminal domain YPTB_RS15430 PF12404 Peptidase YPTB_RS15430 PF00883 Cytosol aminopeptidase family, catalytic domain YPTB_RS15435 PF04384 Iron-sulphur cluster assembly YPTB_RS15440 PF00111 2Fe-2S iron-sulfur cluster binding domain YPTB_RS15445 PF00012 Hsp70 protein YPTB_RS15450 PF00226 DnaJ domain YPTB_RS15450 PF07743 HSCB C-terminal oligomerisation domain YPTB_RS15455 PF01521 Iron-sulphur cluster biosynthesis YPTB_RS15460 PF01592 NifU-like N terminal domain YPTB_RS15465 PF00266 Aminotransferase class-V YPTB_RS15470 PF02082 Transcriptional regulator YPTB_RS15475 PF00588 SpoU rRNA Methylase family YPTB_RS15480 PF00459 Inositol monophosphatase family YPTB_RS15485 PF03824 High-affinity nickel-transport protein YPTB_RS15490 PF06226 Protein of unknown function (DUF1007) YPTB_RS15495 PF00874 PRD domain YPTB_RS15500 PF12832 MFS_1 like family YPTB_RS15505 PF13505 Outer membrane protein beta-barrel domain YPTB_RS15515 PF00464 Serine hydroxymethyltransferase YPTB_RS15520 PF00175 Oxidoreductase NAD-binding domain YPTB_RS15520 PF00970 Oxidoreductase FAD-binding domain YPTB_RS15520 PF00042 Globin YPTB_RS15525 PF14503 YhfZ C-terminal domain YPTB_RS15525 PF14502 Helix-turn-helix domain YPTB_RS15530 PF00543 Nitrogen regulatory protein P-II YPTB_RS15535 PF00795 Carbon-nitrogen hydrolase YPTB_RS15535 PF02540 NAD synthase YPTB_RS15540 PF00158 Sigma-54 interaction domain YPTB_RS15540 PF00072 Response regulator receiver domain YPTB_RS15545 PF13942 YfhG lipoprotein YPTB_RS15550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS15550 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS15565 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPTB_RS15565 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPTB_RS15565 PF02769 AIR synthase related protein, C-terminal domain YPTB_RS15570 PF01464 Transglycosylase SLT domain YPTB_RS15570 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS15575 PF14437 MafB19-like deaminase YPTB_RS15585 PF01380 SIS domain YPTB_RS15590 PF01380 SIS domain YPTB_RS15590 PF01418 Helix-turn-helix domain, rpiR family YPTB_RS15595 PF12838 4Fe-4S dicluster domain YPTB_RS15600 PF01648 4'-phosphopantetheinyl transferase superfamily YPTB_RS15605 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPTB_RS15610 PF02565 Recombination protein O C terminal YPTB_RS15610 PF11967 Recombination protein O N terminal YPTB_RS15615 PF07650 KH domain YPTB_RS15615 PF01926 50S ribosome-binding GTPase YPTB_RS15620 PF00035 Double-stranded RNA binding motif YPTB_RS15620 PF14622 Ribonuclease-III-like YPTB_RS15625 PF10502 Signal peptidase, peptidase S26 YPTB_RS15630 PF06421 GTP-binding protein LepA C-terminus YPTB_RS15630 PF03144 Elongation factor Tu domain 2 YPTB_RS15630 PF00009 Elongation factor Tu GTP binding domain YPTB_RS15630 PF00679 Elongation factor G C-terminus YPTB_RS15645 PF03888 MucB/RseB N-terminal domain YPTB_RS15645 PF17188 MucB/RseB C-terminal domain YPTB_RS15650 PF03873 Anti sigma-E protein RseA, C-terminal domain YPTB_RS15650 PF03872 Anti sigma-E protein RseA, N-terminal domain YPTB_RS15655 PF08281 Sigma-70, region 4 YPTB_RS15655 PF04542 Sigma-70 region 2 YPTB_RS15660 PF02910 Fumarate reductase flavoprotein C-term YPTB_RS15660 PF00890 FAD binding domain YPTB_RS15665 PF05175 Methyltransferase small domain YPTB_RS15670 PF00270 DEAD/DEAH box helicase YPTB_RS15670 PF00271 Helicase conserved C-terminal domain YPTB_RS15675 PF12796 Ankyrin repeats (3 copies) YPTB_RS15690 PF01228 Glycine radical YPTB_RS15695 PF03167 Uracil DNA glycosylase superfamily YPTB_RS15700 PF01470 Pyroglutamyl peptidase YPTB_RS15715 PF03746 LamB/YcsF family YPTB_RS15720 PF02626 Carboxyltransferase domain, subdomain A and B YPTB_RS15725 PF02682 Carboxyltransferase domain, subdomain C and D YPTB_RS15730 PF01784 NIF3 (NGG1p interacting factor 3) YPTB_RS15735 PF02112 cAMP phosphodiesterases class-II YPTB_RS15740 PF00875 DNA photolyase YPTB_RS15740 PF03441 FAD binding domain of DNA photolyase YPTB_RS15745 PF08349 Protein of unknown function (DUF1722) YPTB_RS15750 PF10725 Protein of unknown function (DUF2517) YPTB_RS15765 PF03814 Potassium-transporting ATPase A subunit YPTB_RS15775 PF02669 K+-transporting ATPase, c chain YPTB_RS15780 PF13492 GAF domain YPTB_RS15780 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS15780 PF02702 Osmosensitive K+ channel His kinase sensor domain YPTB_RS15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS15780 PF13493 Domain of unknown function (DUF4118) YPTB_RS15785 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS15785 PF00072 Response regulator receiver domain YPTB_RS15805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPTB_RS15805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPTB_RS15805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPTB_RS15805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPTB_RS15810 PF03925 SeqA protein C-terminal domain YPTB_RS15810 PF17206 SeqA protein N-terminal domain YPTB_RS15830 PF04794 YdjC-like protein YPTB_RS15835 PF07883 Cupin domain YPTB_RS15835 PF12833 Helix-turn-helix domain YPTB_RS15840 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPTB_RS15850 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB_RS15860 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTB_RS15865 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPTB_RS15870 PF02254 TrkA-N domain YPTB_RS15870 PF07885 Ion channel YPTB_RS15880 PF06411 HdeA/HdeB family YPTB_RS15885 PF03824 High-affinity nickel-transport protein YPTB_RS15890 PF03253 Urea transporter YPTB_RS15895 PF01774 UreD urease accessory protein YPTB_RS15900 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPTB_RS15905 PF01730 UreF YPTB_RS15910 PF05194 UreE urease accessory protein, C-terminal domain YPTB_RS15910 PF02814 UreE urease accessory protein, N-terminal domain YPTB_RS15915 PF00449 Urease alpha-subunit, N-terminal domain YPTB_RS15915 PF01979 Amidohydrolase family YPTB_RS15920 PF00699 Urease beta subunit YPTB_RS15925 PF00547 Urease, gamma subunit YPTB_RS15930 PF00005 ABC transporter YPTB_RS15935 PF00005 ABC transporter YPTB_RS15940 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB_RS15940 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS15945 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS15950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB_RS15955 PF00313 'Cold-shock' DNA-binding domain YPTB_RS15965 PF06711 Protein of unknown function (DUF1198) YPTB_RS15970 PF09400 Protein of unknown function (DUF2002) YPTB_RS15975 PF06392 Acid shock protein repeat YPTB_RS15985 PF07972 NrdI Flavodoxin like YPTB_RS15990 PF00317 Ribonucleotide reductase, all-alpha domain YPTB_RS15990 PF08343 Ribonucleotide reductase N-terminal YPTB_RS15990 PF02867 Ribonucleotide reductase, barrel domain YPTB_RS15995 PF00268 Ribonucleotide reductase, small chain YPTB_RS16000 PF00571 CBS domain YPTB_RS16000 PF00005 ABC transporter YPTB_RS16005 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS16010 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTB_RS16020 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPTB_RS16030 PF00929 Exonuclease YPTB_RS16035 PF00075 RNase H YPTB_RS16040 PF08241 Methyltransferase domain YPTB_RS16045 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPTB_RS16045 PF00753 Metallo-beta-lactamase superfamily YPTB_RS16050 PF01476 LysM domain YPTB_RS16050 PF01464 Transglycosylase SLT domain YPTB_RS16055 PF03372 Endonuclease/Exonuclease/phosphatase family YPTB_RS16065 PF00248 Aldo/keto reductase family YPTB_RS16105 PF09383 NIL domain YPTB_RS16105 PF00005 ABC transporter YPTB_RS16110 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS16115 PF03180 NLPA lipoprotein YPTB_RS16120 PF16358 RcsF lipoprotein YPTB_RS16125 PF01980 tRNA-methyltransferase O YPTB_RS16125 PF18389 TrmO C-terminal domain YPTB_RS16130 PF03129 Anticodon binding domain YPTB_RS16130 PF04073 Aminoacyl-tRNA editing domain YPTB_RS16130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPTB_RS16135 PF04170 NlpE N-terminal domain YPTB_RS16135 PF17185 NlpE C-terminal OB domain YPTB_RS16140 PF00472 RF-1 domain YPTB_RS16145 PF07152 YaeQ protein YPTB_RS16150 PF06786 Uncharacterised protein family (UPF0253) YPTB_RS16155 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPTB_RS16160 PF00034 Cytochrome c YPTB_RS16165 PF01171 PP-loop family YPTB_RS16165 PF09179 TilS substrate binding domain YPTB_RS16165 PF11734 TilS substrate C-terminal domain YPTB_RS16170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPTB_RS16175 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPTB_RS16180 PF02811 PHP domain YPTB_RS16180 PF01336 OB-fold nucleic acid binding domain YPTB_RS16180 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPTB_RS16180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPTB_RS16180 PF14579 Helix-hairpin-helix motif YPTB_RS16185 PF01351 Ribonuclease HII YPTB_RS16190 PF02684 Lipid-A-disaccharide synthetase YPTB_RS16195 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPTB_RS16195 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB_RS16200 PF07977 FabA-like domain YPTB_RS16205 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPTB_RS16205 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB_RS16210 PF03938 Outer membrane protein (OmpH-like) YPTB_RS16215 PF07244 Surface antigen variable number repeat YPTB_RS16215 PF01103 Surface antigen YPTB_RS16220 PF02163 Peptidase family M50 YPTB_RS16220 PF17820 PDZ domain YPTB_RS16230 PF01255 Putative undecaprenyl diphosphate synthase YPTB_RS16235 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPTB_RS16235 PF13288 DXP reductoisomerase C-terminal domain YPTB_RS16235 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPTB_RS16240 PF01765 Ribosome recycling factor YPTB_RS16245 PF00696 Amino acid kinase family YPTB_RS16250 PF00889 Elongation factor TS YPTB_RS16255 PF00318 Ribosomal protein S2 YPTB_RS16260 PF00557 Metallopeptidase family M24 YPTB_RS16265 PF08335 GlnD PII-uridylyltransferase YPTB_RS16265 PF01966 HD domain YPTB_RS16265 PF01909 Nucleotidyltransferase domain YPTB_RS16265 PF01842 ACT domain YPTB_RS16270 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB_RS16270 PF14602 Hexapeptide repeat of succinyl-transferase YPTB_RS16270 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPTB_RS16275 PF11944 Protein of unknown function (DUF3461) YPTB_RS16280 PF00258 Flavodoxin YPTB_RS16285 PF00849 RNA pseudouridylate synthase YPTB_RS16290 PF04287 tRNA pseudouridine synthase C YPTB_RS16300 PF07348 Syd protein (SUKH-2) YPTB_RS16305 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPTB_RS16305 PF14489 QueF-like protein YPTB_RS16310 PF11892 Domain of unknown function (DUF3412) YPTB_RS16310 PF03641 Possible lysine decarboxylase YPTB_RS16310 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPTB_RS16315 PF01367 5'-3' exonuclease, C-terminal SAM fold YPTB_RS16315 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPTB_RS16320 PF01728 FtsJ-like methyltransferase YPTB_RS16320 PF18125 RlmM ferredoxin-like domain YPTB_RS16325 PF04241 Protein of unknown function (DUF423) YPTB_RS16330 PF03466 LysR substrate binding domain YPTB_RS16330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS16335 PF00266 Aminotransferase class-V YPTB_RS16340 PF02657 Fe-S metabolism associated domain YPTB_RS16345 PF00899 ThiF family YPTB_RS16350 PF03562 MltA specific insert domain YPTB_RS16350 PF06725 3D domain YPTB_RS16370 PF11741 AMIN domain YPTB_RS16370 PF01520 N-acetylmuramoyl-L-alanine amidase YPTB_RS16375 PF00583 Acetyltransferase (GNAT) family YPTB_RS16375 PF00696 Amino acid kinase family YPTB_RS16380 PF13538 UvrD-like helicase C-terminal domain YPTB_RS16385 PF13361 UvrD-like helicase C-terminal domain YPTB_RS16385 PF12705 PD-(D/E)XK nuclease superfamily YPTB_RS16385 PF00580 UvrD/REP helicase N-terminal domain YPTB_RS16390 PF00675 Insulinase (Peptidase family M16) YPTB_RS16390 PF05193 Peptidase M16 inactive domain YPTB_RS16390 PF16187 Middle or third domain of peptidase_M16 YPTB_RS16395 PF17946 RecC C-terminal domain YPTB_RS16425 PF00303 Thymidylate synthase YPTB_RS16430 PF01790 Prolipoprotein diacylglyceryl transferase YPTB_RS16435 PF05524 PEP-utilising enzyme, N-terminal YPTB_RS16435 PF01590 GAF domain YPTB_RS16435 PF00391 PEP-utilising enzyme, mobile domain YPTB_RS16435 PF02896 PEP-utilising enzyme, TIM barrel domain YPTB_RS16440 PF00293 NUDIX domain YPTB_RS16455 PF02976 DNA mismatch repair enzyme MutH YPTB_RS16460 PF00248 Aldo/keto reductase family YPTB_RS16475 PF07690 Major Facilitator Superfamily YPTB_RS16480 PF01553 Acyltransferase YPTB_RS16480 PF13193 AMP-binding enzyme C-terminal domain YPTB_RS16480 PF00501 AMP-binding enzyme YPTB_RS16485 PF01568 Molydopterin dinucleotide binding domain YPTB_RS16485 PF00384 Molybdopterin oxidoreductase YPTB_RS16490 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS16495 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPTB_RS16495 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPTB_RS16500 PF03466 LysR substrate binding domain YPTB_RS16500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS16505 PF07690 Major Facilitator Superfamily YPTB_RS16510 PF03466 LysR substrate binding domain YPTB_RS16510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS16525 PF00672 HAMP domain YPTB_RS16525 PF02203 Tar ligand binding domain homologue YPTB_RS16525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB_RS16545 PF06750 Bacterial Peptidase A24 N-terminal domain YPTB_RS16545 PF01478 Type IV leader peptidase family YPTB_RS16565 PF07963 Prokaryotic N-terminal methylation motif YPTB_RS16565 PF11612 Type II secretion system (T2SS), protein J YPTB_RS16580 PF08334 Type II secretion system (T2SS), protein G YPTB_RS16580 PF07963 Prokaryotic N-terminal methylation motif YPTB_RS16585 PF00482 Type II secretion system (T2SS), protein F YPTB_RS16590 PF00437 Type II/IV secretion system protein YPTB_RS16595 PF00263 Bacterial type II and III secretion system protein YPTB_RS16595 PF03958 Bacterial type II/III secretion system short domain YPTB_RS16610 PF00484 Carbonic anhydrase YPTB_RS16635 PF09092 Lyase, N terminal YPTB_RS16635 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPTB_RS16635 PF09093 Lyase, catalytic YPTB_RS16635 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPTB_RS16640 PF00884 Sulfatase YPTB_RS16645 PF08220 DeoR-like helix-turn-helix domain YPTB_RS16645 PF00455 DeoR C terminal sensor domain YPTB_RS16650 PF08013 Tagatose 6 phosphate kinase YPTB_RS16655 PF01380 SIS domain YPTB_RS16660 PF03830 PTS system sorbose subfamily IIB component YPTB_RS16665 PF03609 PTS system sorbose-specific iic component YPTB_RS16670 PF03613 PTS system mannose/fructose/sorbose family IID component YPTB_RS16675 PF03610 PTS system fructose IIA component YPTB_RS16680 PF01979 Amidohydrolase family YPTB_RS16690 PF07470 Glycosyl Hydrolase Family 88 YPTB_RS16695 PF04055 Radical SAM superfamily YPTB_RS16695 PF13186 Iron-sulfur cluster-binding domain YPTB_RS16700 PF00884 Sulfatase YPTB_RS16710 PF01116 Fructose-bisphosphate aldolase class-II YPTB_RS16725 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS16730 PF07690 Major Facilitator Superfamily YPTB_RS16735 PF17137 Domain of unknown function (DUF5110) YPTB_RS16735 PF01055 Glycosyl hydrolases family 31 YPTB_RS16735 PF16338 Domain of unknown function (DUF4968) YPTB_RS16735 PF13802 Galactose mutarotase-like YPTB_RS16740 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS16745 PF02264 LamB porin YPTB_RS16750 PF00367 phosphotransferase system, EIIB YPTB_RS16750 PF02378 Phosphotransferase system, EIIC YPTB_RS16755 PF08533 Beta-galactosidase C-terminal domain YPTB_RS16755 PF08532 Beta-galactosidase trimerisation domain YPTB_RS16755 PF02449 Beta-galactosidase YPTB_RS16760 PF07745 Glycosyl hydrolase family 53 YPTB_RS16765 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS16770 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS16775 PF13416 Bacterial extracellular solute-binding protein YPTB_RS16780 PF17912 MalK OB fold domain YPTB_RS16780 PF00005 ABC transporter YPTB_RS16785 PF00005 ABC transporter YPTB_RS16790 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS16795 PF13407 Periplasmic binding protein domain YPTB_RS16805 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPTB_RS16810 PF03551 Transcriptional regulator PadR-like family YPTB_RS16905 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA YPTB_RS16910 PF15723 Motility quorum-sensing regulator, toxin of MqsA YPTB_RS16935 PF02899 Phage integrase, N-terminal SAM-like domain YPTB_RS16935 PF00589 Phage integrase family YPTB_RS16995 PF05840 Bacteriophage replication gene A protein (GPA) YPTB_RS17130 PF00589 Phage integrase family YPTB_RS17130 PF14659 Phage integrase, N-terminal SAM-like domain YPTB_RS17130 PF13356 Arm DNA-binding domain YPTB_RS17140 PF00152 tRNA synthetases class II (D, K and N) YPTB_RS17140 PF01336 OB-fold nucleic acid binding domain YPTB_RS17145 PF00472 RF-1 domain YPTB_RS17145 PF03462 PCRF domain YPTB_RS17150 PF02272 DHHA1 domain YPTB_RS17150 PF01368 DHH family YPTB_RS17150 PF17768 RecJ OB domain YPTB_RS17155 PF10411 Disulfide bond isomerase protein N-terminus YPTB_RS17155 PF13098 Thioredoxin-like domain YPTB_RS17160 PF02899 Phage integrase, N-terminal SAM-like domain YPTB_RS17160 PF00589 Phage integrase family YPTB_RS17165 PF00258 Flavodoxin YPTB_RS17170 PF06123 Inner membrane protein CreD YPTB_RS17175 PF00672 HAMP domain YPTB_RS17175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS17175 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS17180 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS17180 PF00072 Response regulator receiver domain YPTB_RS17185 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPTB_RS17190 PF03937 Flavinator of succinate dehydrogenase YPTB_RS17195 PF01571 Aminomethyltransferase folate-binding domain YPTB_RS17205 PF03006 Haemolysin-III related YPTB_RS17215 PF03895 YadA-like membrane anchor domain YPTB_RS17215 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS17215 PF05658 Head domain of trimeric autotransporter adhesin YPTB_RS17215 PF05662 Coiled stalk of trimeric autotransporter adhesin YPTB_RS17230 PF02347 Glycine cleavage system P-protein YPTB_RS17235 PF01597 Glycine cleavage H-protein YPTB_RS17240 PF01571 Aminomethyltransferase folate-binding domain YPTB_RS17240 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPTB_RS17245 PF01494 FAD binding domain YPTB_RS17250 PF01494 FAD binding domain YPTB_RS17255 PF00557 Metallopeptidase family M24 YPTB_RS17255 PF05195 Aminopeptidase P, N-terminal domain YPTB_RS17260 PF03695 Uncharacterised protein family (UPF0149) YPTB_RS17265 PF05164 Cell division protein ZapA YPTB_RS17270 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPTB_RS17275 PF01842 ACT domain YPTB_RS17275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB_RS17275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB_RS17280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPTB_RS17285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS17285 PF03466 LysR substrate binding domain YPTB_RS17290 PF04402 Protein of unknown function (DUF541) YPTB_RS17295 PF01810 LysE type translocator YPTB_RS17300 PF00924 Mechanosensitive ion channel YPTB_RS17300 PF05552 Conserved TM helix YPTB_RS17310 PF01116 Fructose-bisphosphate aldolase class-II YPTB_RS17315 PF00162 Phosphoglycerate kinase YPTB_RS17320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPTB_RS17320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPTB_RS17325 PF00456 Transketolase, thiamine diphosphate binding domain YPTB_RS17325 PF02779 Transketolase, pyrimidine binding domain YPTB_RS17325 PF02780 Transketolase, C-terminal domain YPTB_RS17330 PF01435 Peptidase family M48 YPTB_RS17335 PF00355 Rieske [2Fe-2S] domain YPTB_RS17340 PF01797 Transposase IS200 like YPTB_RS17345 PF17810 Arginine decarboxylase helical bundle domain YPTB_RS17345 PF17944 Arginine decarboxylase C-terminal helical extension YPTB_RS17345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPTB_RS17350 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPTB_RS17350 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPTB_RS17350 PF02772 S-adenosylmethionine synthetase, central domain YPTB_RS17355 PF17283 SprT-like zinc ribbon domain YPTB_RS17355 PF10263 SprT-like family YPTB_RS17360 PF04231 Endonuclease I YPTB_RS17370 PF04452 RNA methyltransferase YPTB_RS17375 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPTB_RS17375 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPTB_RS17380 PF02622 Uncharacterized ACR, COG1678 YPTB_RS17385 PF03652 Holliday junction resolvase YPTB_RS17390 PF00795 Carbon-nitrogen hydrolase YPTB_RS17395 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPTB_RS17400 PF00437 Type II/IV secretion system protein YPTB_RS17405 PF01168 Alanine racemase, N-terminal domain YPTB_RS17410 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPTB_RS17410 PF03807 NADP oxidoreductase coenzyme F420-dependent YPTB_RS17415 PF02325 YGGT family YPTB_RS17420 PF02594 Uncharacterised ACR, YggU family COG1872 YPTB_RS17425 PF01725 Ham1 family YPTB_RS17430 PF04055 Radical SAM superfamily YPTB_RS17430 PF06969 HemN C-terminal domain YPTB_RS17435 PF12146 Serine aminopeptidase, S33 YPTB_RS17435 PF11713 Peptidase C80 family YPTB_RS17435 PF07634 RtxA repeat YPTB_RS17435 PF16671 Actin cross-linking domain YPTB_RS17435 PF11647 Membrane Localization Domain YPTB_RS17440 PF11101 Protein of unknown function (DUF2884) YPTB_RS17445 PF04960 Glutaminase YPTB_RS17450 PF04320 Protein with unknown function (DUF469) YPTB_RS17455 PF02390 Putative methyltransferase YPTB_RS17460 PF10576 Iron-sulfur binding domain of endonuclease III YPTB_RS17460 PF00633 Helix-hairpin-helix motif YPTB_RS17460 PF00730 HhH-GPD superfamily base excision DNA repair protein YPTB_RS17460 PF14815 NUDIX domain YPTB_RS17465 PF04362 Bacterial Fe(2+) trafficking YPTB_RS17470 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPTB_RS17470 PF01464 Transglycosylase SLT domain YPTB_RS17480 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS17490 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS17495 PF00005 ABC transporter YPTB_RS17500 PF13407 Periplasmic binding protein domain YPTB_RS17505 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPTB_RS17505 PF01276 Orn/Lys/Arg decarboxylase, major domain YPTB_RS17505 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPTB_RS17515 PF02899 Phage integrase, N-terminal SAM-like domain YPTB_RS17515 PF00589 Phage integrase family YPTB_RS17525 PF03400 IS1 transposase YPTB_RS17530 PF03811 InsA N-terminal domain YPTB_RS17530 PF12759 InsA C-terminal domain YPTB_RS17555 PF03811 InsA N-terminal domain YPTB_RS17555 PF12759 InsA C-terminal domain YPTB_RS17575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPTB_RS17575 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS17575 PF13296 Putative type VI secretion system Rhs element Vgr YPTB_RS17580 PF17871 AAA lid domain YPTB_RS17580 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS17580 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS17580 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS17590 PF00691 OmpA family YPTB_RS17590 PF05736 OprF membrane domain YPTB_RS17605 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPTB_RS17625 PF03811 InsA N-terminal domain YPTB_RS17625 PF12759 InsA C-terminal domain YPTB_RS17635 PF02517 CPBP intramembrane metalloprotease YPTB_RS17640 PF00765 Autoinducer synthase YPTB_RS17645 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS17645 PF03472 Autoinducer binding domain YPTB_RS17665 PF04183 IucA / IucC family YPTB_RS17665 PF06276 Ferric iron reductase FhuF-like transporter YPTB_RS17675 PF04183 IucA / IucC family YPTB_RS17675 PF06276 Ferric iron reductase FhuF-like transporter YPTB_RS17680 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPTB_RS17685 PF00593 TonB dependent receptor YPTB_RS17685 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS17700 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS17705 PF00939 Sodium:sulfate symporter transmembrane region YPTB_RS17735 PF03527 RHS protein YPTB_RS17735 PF05593 RHS Repeat YPTB_RS17760 PF03527 RHS protein YPTB_RS17760 PF05593 RHS Repeat YPTB_RS17770 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS17775 PF12951 Passenger-associated-transport-repeat YPTB_RS17780 PF12951 Passenger-associated-transport-repeat YPTB_RS17785 PF02447 GntP family permease YPTB_RS17800 PF00005 ABC transporter YPTB_RS17800 PF00664 ABC transporter transmembrane region YPTB_RS17805 PF08021 Siderophore-interacting FAD-binding domain YPTB_RS17805 PF00664 ABC transporter transmembrane region YPTB_RS17805 PF00005 ABC transporter YPTB_RS17805 PF04954 Siderophore-interacting protein YPTB_RS17815 PF00975 Thioesterase domain YPTB_RS17830 PF00501 AMP-binding enzyme YPTB_RS17830 PF08242 Methyltransferase domain YPTB_RS17830 PF00550 Phosphopantetheine attachment site YPTB_RS17830 PF00668 Condensation domain YPTB_RS17835 PF00668 Condensation domain YPTB_RS17835 PF13193 AMP-binding enzyme C-terminal domain YPTB_RS17835 PF00501 AMP-binding enzyme YPTB_RS17840 PF00501 AMP-binding enzyme YPTB_RS17840 PF00668 Condensation domain YPTB_RS17840 PF08242 Methyltransferase domain YPTB_RS17840 PF00550 Phosphopantetheine attachment site YPTB_RS17850 PF07715 TonB-dependent Receptor Plug Domain YPTB_RS17850 PF00593 TonB dependent receptor YPTB_RS17855 PF07687 Peptidase dimerisation domain YPTB_RS17855 PF01546 Peptidase family M20/M25/M40 YPTB_RS17860 PF03806 AbgT putative transporter family YPTB_RS17865 PF14496 C-terminal novel E3 ligase, LRR-interacting YPTB_RS17865 PF12468 Type III secretion system leucine rich repeat protein YPTB_RS17870 PF14496 C-terminal novel E3 ligase, LRR-interacting YPTB_RS17870 PF12468 Type III secretion system leucine rich repeat protein YPTB_RS17875 PF03797 Autotransporter beta-domain YPTB_RS17885 PF07906 ShET2 enterotoxin, N-terminal region YPTB_RS17890 PF00873 AcrB/AcrD/AcrF family YPTB_RS17895 PF00529 HlyD membrane-fusion protein of T1SS YPTB_RS17895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS17900 PF00990 Diguanylate cyclase, GGDEF domain YPTB_RS17900 PF08448 PAS fold YPTB_RS17900 PF00563 EAL domain YPTB_RS17900 PF08447 PAS fold YPTB_RS17910 PF13276 HTH-like domain YPTB_RS17910 PF13333 Integrase core domain YPTB_RS17910 PF00665 Integrase core domain YPTB_RS17915 PF00872 Transposase, Mutator family YPTB_RS17925 PF05433 Glycine zipper 2TM domain YPTB_RS17950 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPTB_RS17950 PF00691 OmpA family YPTB_RS17955 PF01618 MotA/TolQ/ExbB proton channel family YPTB_RS17960 PF04545 Sigma-70, region 4 YPTB_RS17960 PF04542 Sigma-70 region 2 YPTB_RS17985 PF07196 Flagellin hook IN motif YPTB_RS17985 PF07195 Flagellar hook-associated protein 2 C-terminus YPTB_RS17985 PF02465 Flagellar hook-associated protein 2 N-terminus YPTB_RS17990 PF00669 Bacterial flagellin N-terminal helical region YPTB_RS17990 PF00700 Bacterial flagellin C-terminal helical region YPTB_RS17990 PF07196 Flagellin hook IN motif YPTB_RS17995 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS17995 PF18500 CadC C-terminal domain 1 YPTB_RS18015 PF00460 Flagella basal body rod protein YPTB_RS18015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS18025 PF02119 Flagellar P-ring protein YPTB_RS18030 PF02107 Flagellar L-ring protein YPTB_RS18035 PF00460 Flagella basal body rod protein YPTB_RS18035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS18040 PF00460 Flagella basal body rod protein YPTB_RS18040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS18045 PF07559 Flagellar basal body protein FlaE YPTB_RS18045 PF00460 Flagella basal body rod protein YPTB_RS18045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS18050 PF13860 FlgD Ig-like domain YPTB_RS18050 PF13861 FlgD Tudor-like domain YPTB_RS18050 PF03963 Flagellar hook capping protein - N-terminal region YPTB_RS18055 PF00460 Flagella basal body rod protein YPTB_RS18055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPTB_RS18060 PF00460 Flagella basal body rod protein YPTB_RS18065 PF13144 Chaperone for flagella basal body P-ring formation YPTB_RS18085 PF18269 T3SS EscN ATPase C-terminal domain YPTB_RS18085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB_RS18100 PF01514 Secretory protein of YscJ/FliF family YPTB_RS18100 PF08345 Flagellar M-ring protein C-terminal YPTB_RS18105 PF02049 Flagellar hook-basal body complex protein FliE YPTB_RS18110 PF00072 Response regulator receiver domain YPTB_RS18110 PF02954 Bacterial regulatory protein, Fis family YPTB_RS18110 PF00158 Sigma-54 interaction domain YPTB_RS18120 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPTB_RS18125 PF00813 FliP family YPTB_RS18130 PF01313 Bacterial export proteins, family 3 YPTB_RS18135 PF01311 Bacterial export proteins, family 1 YPTB_RS18140 PF01312 FlhB HrpN YscU SpaS Family YPTB_RS18145 PF00771 FHIPEP family YPTB_RS18160 PF01497 Periplasmic binding protein YPTB_RS18165 PF09222 Fimbrial adhesin F17-AG, lectin domain YPTB_RS18165 PF00419 Fimbrial protein YPTB_RS18170 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS18170 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS18175 PF13954 PapC N-terminal domain YPTB_RS18175 PF13953 PapC C-terminal domain YPTB_RS18175 PF00577 Outer membrane usher protein YPTB_RS18180 PF00419 Fimbrial protein YPTB_RS18185 PF00704 Glycosyl hydrolases family 18 YPTB_RS18190 PF18416 N-acetylglucosamine binding protein domain 2 YPTB_RS18190 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YPTB_RS18225 PF04972 BON domain YPTB_RS18225 PF00263 Bacterial type II and III secretion system protein YPTB_RS18225 PF13629 Pilus formation protein N terminal region YPTB_RS18240 PF00437 Type II/IV secretion system protein YPTB_RS18275 PF02472 Biopolymer transport protein ExbD/TolR YPTB_RS18280 PF01618 MotA/TolQ/ExbB proton channel family YPTB_RS18285 PF01053 Cys/Met metabolism PLP-dependent enzyme YPTB_RS18290 PF09335 SNARE associated Golgi protein YPTB_RS18295 PF12833 Helix-turn-helix domain YPTB_RS18295 PF06719 AraC-type transcriptional regulator N-terminus YPTB_RS18300 PF00465 Iron-containing alcohol dehydrogenase YPTB_RS18310 PF00248 Aldo/keto reductase family YPTB_RS18315 PF11842 Domain of unknown function (DUF3362) YPTB_RS18315 PF08497 Radical SAM N-terminal YPTB_RS18315 PF04055 Radical SAM superfamily YPTB_RS18320 PF07731 Multicopper oxidase YPTB_RS18320 PF07732 Multicopper oxidase YPTB_RS18325 PF01553 Acyltransferase YPTB_RS18330 PF00521 DNA gyrase/topoisomerase IV, subunit A YPTB_RS18330 PF03989 DNA gyrase C-terminal domain, beta-propeller YPTB_RS18340 PF02525 Flavodoxin-like fold YPTB_RS18345 PF03466 LysR substrate binding domain YPTB_RS18345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS18350 PF00986 DNA gyrase B subunit, carboxyl terminus YPTB_RS18350 PF01751 Toprim domain YPTB_RS18350 PF00204 DNA gyrase B YPTB_RS18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS18355 PF05728 Uncharacterised protein family (UPF0227) YPTB_RS18360 PF00149 Calcineurin-like phosphoesterase YPTB_RS18365 PF06853 Protein of unknown function (DUF1249) YPTB_RS18370 PF00293 NUDIX domain YPTB_RS18375 PF02321 Outer membrane efflux protein YPTB_RS18385 PF06693 Protein of unknown function (DUF1190) YPTB_RS18390 PF03738 Glutathionylspermidine synthase preATP-grasp YPTB_RS18395 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPTB_RS18400 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPTB_RS18410 PF04380 Membrane fusogenic activity YPTB_RS18415 PF13520 Amino acid permease YPTB_RS18420 PF00294 pfkB family carbohydrate kinase YPTB_RS18420 PF01467 Cytidylyltransferase-like YPTB_RS18425 PF08335 GlnD PII-uridylyltransferase YPTB_RS18425 PF03710 Glutamate-ammonia ligase adenylyltransferase YPTB_RS18430 PF01928 CYTH domain YPTB_RS18435 PF08239 Bacterial SH3 domain YPTB_RS18440 PF12627 Probable RNA and SrmB- binding site of polymerase A YPTB_RS18440 PF01743 Poly A polymerase head domain YPTB_RS18440 PF01966 HD domain YPTB_RS18445 PF02673 Bacitracin resistance protein BacA YPTB_RS18450 PF02152 Dihydroneopterin aldolase YPTB_RS18455 PF02660 Glycerol-3-phosphate acyltransferase YPTB_RS18460 PF00814 Glycoprotease family YPTB_RS18465 PF01165 Ribosomal protein S21 YPTB_RS18470 PF08278 DNA primase DnaG DnaB-binding YPTB_RS18470 PF10410 DnaB-helicase binding domain of primase YPTB_RS18470 PF01807 CHC2 zinc finger YPTB_RS18470 PF08275 DNA primase catalytic core, N-terminal domain YPTB_RS18475 PF03979 Sigma-70 factor, region 1.1 YPTB_RS18475 PF04542 Sigma-70 region 2 YPTB_RS18475 PF00140 Sigma-70 factor, region 1.2 YPTB_RS18475 PF04545 Sigma-70, region 4 YPTB_RS18475 PF04539 Sigma-70 region 3 YPTB_RS18475 PF04546 Sigma-70, non-essential region YPTB_RS18535 PF03466 LysR substrate binding domain YPTB_RS18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS18555 PF01042 Endoribonuclease L-PSP YPTB_RS18575 PF00155 Aminotransferase class I and II YPTB_RS18595 PF00529 HlyD membrane-fusion protein of T1SS YPTB_RS18595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPTB_RS18600 PF04632 Fusaric acid resistance protein family YPTB_RS18610 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPTB_RS18610 PF14310 Fibronectin type III-like domain YPTB_RS18610 PF00933 Glycosyl hydrolase family 3 N terminal domain YPTB_RS18620 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS18625 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS18630 PF01547 Bacterial extracellular solute-binding protein YPTB_RS18635 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS18640 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPTB_RS18645 PF00005 ABC transporter YPTB_RS18645 PF17912 MalK OB fold domain YPTB_RS18645 PF03459 TOBE domain YPTB_RS18665 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS18665 PF13332 Hemagglutinin repeat YPTB_RS18665 PF04829 Pre-toxin domain with VENN motif YPTB_RS18665 PF05860 haemagglutination activity domain YPTB_RS18685 PF04829 Pre-toxin domain with VENN motif YPTB_RS18685 PF13332 Hemagglutinin repeat YPTB_RS18690 PF07262 CDI immunity protein YPTB_RS18695 PF04829 Pre-toxin domain with VENN motif YPTB_RS18695 PF13332 Hemagglutinin repeat YPTB_RS18720 PF05594 Haemagluttinin repeat YPTB_RS18720 PF05860 haemagglutination activity domain YPTB_RS18720 PF15526 Novel toxin 21 YPTB_RS18720 PF04829 Pre-toxin domain with VENN motif YPTB_RS18720 PF13332 Hemagglutinin repeat YPTB_RS18730 PF05860 haemagglutination activity domain YPTB_RS18730 PF04829 Pre-toxin domain with VENN motif YPTB_RS18730 PF13332 Hemagglutinin repeat YPTB_RS18730 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS18735 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB_RS18735 PF17287 POTRA domain YPTB_RS18735 PF08479 POTRA domain, ShlB-type YPTB_RS18740 PF00092 von Willebrand factor type A domain YPTB_RS18745 PF02342 TerD domain YPTB_RS18755 PF00092 von Willebrand factor type A domain YPTB_RS18775 PF03729 Short repeat of unknown function (DUF308) YPTB_RS18780 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS18780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPTB_RS18785 PF05175 Methyltransferase small domain YPTB_RS18790 PF03797 Autotransporter beta-domain YPTB_RS18795 PF01863 Protein of unknown function DUF45 YPTB_RS18800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB_RS18805 PF00375 Sodium:dicarboxylate symporter family YPTB_RS18810 PF10688 Bacterial inner membrane protein YPTB_RS18815 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPTB_RS18815 PF08666 SAF domain YPTB_RS18820 PF01232 Mannitol dehydrogenase Rossmann domain YPTB_RS18820 PF08125 Mannitol dehydrogenase C-terminal domain YPTB_RS18825 PF02614 Glucuronate isomerase YPTB_RS18835 PF07690 Major Facilitator Superfamily YPTB_RS18840 PF07729 FCD domain YPTB_RS18840 PF00392 Bacterial regulatory proteins, gntR family YPTB_RS18850 PF09335 SNARE associated Golgi protein YPTB_RS18855 PF13721 SecD export protein N-terminal TM region YPTB_RS18870 PF05957 Bacterial protein of unknown function (DUF883) YPTB_RS18875 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPTB_RS18885 PF07681 DoxX YPTB_RS18890 PF13409 Glutathione S-transferase, N-terminal domain YPTB_RS18895 PF03466 LysR substrate binding domain YPTB_RS18895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS18900 PF17954 Quercetinase C-terminal cupin domain YPTB_RS18900 PF02678 Pirin YPTB_RS18905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTB_RS18910 PF04348 LppC putative lipoprotein YPTB_RS18915 PF02021 Uncharacterised protein family UPF0102 YPTB_RS18920 PF13580 SIS domain YPTB_RS18925 PF04972 BON domain YPTB_RS18930 PF00912 Transglycosylase YPTB_RS18945 PF00989 PAS fold YPTB_RS18945 PF01627 Hpt domain YPTB_RS18945 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS18945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS18945 PF00072 Response regulator receiver domain YPTB_RS18945 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPTB_RS18955 PF16199 Radical_SAM C-terminal domain YPTB_RS18955 PF04055 Radical SAM superfamily YPTB_RS18960 PF04898 Glutamate synthase central domain YPTB_RS18960 PF00310 Glutamine amidotransferases class-II YPTB_RS18960 PF01645 Conserved region in glutamate synthase YPTB_RS18960 PF01493 GXGXG motif YPTB_RS18965 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPTB_RS18965 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS18975 PF04386 Stringent starvation protein B YPTB_RS18980 PF02798 Glutathione S-transferase, N-terminal domain YPTB_RS18980 PF00043 Glutathione S-transferase, C-terminal domain YPTB_RS18990 PF00380 Ribosomal protein S9/S16 YPTB_RS18995 PF00572 Ribosomal protein L13 YPTB_RS19000 PF03969 AFG1-like ATPase YPTB_RS19005 PF06295 Protein of unknown function (DUF1043) YPTB_RS19010 PF13180 PDZ domain YPTB_RS19010 PF00595 PDZ domain YPTB_RS19015 PF13180 PDZ domain YPTB_RS19020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPTB_RS19025 PF01722 BolA-like protein YPTB_RS19030 PF13466 STAS domain YPTB_RS19035 PF05494 MlaC protein YPTB_RS19040 PF02470 MlaD protein YPTB_RS19045 PF02405 Permease MlaE YPTB_RS19050 PF00005 ABC transporter YPTB_RS19055 PF01699 Sodium/calcium exchanger protein YPTB_RS19060 PF00571 CBS domain YPTB_RS19060 PF01380 SIS domain YPTB_RS19070 PF06835 Lipopolysaccharide-assembly, LptC-related YPTB_RS19075 PF03968 OstA-like protein YPTB_RS19080 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPTB_RS19080 PF00005 ABC transporter YPTB_RS19085 PF04552 Sigma-54, DNA binding domain YPTB_RS19085 PF04963 Sigma-54 factor, core binding domain YPTB_RS19085 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPTB_RS19090 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPTB_RS19095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB_RS19100 PF03668 P-loop ATPase protein family YPTB_RS19105 PF00381 PTS HPr component phosphorylation site YPTB_RS19110 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPTB_RS19110 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPTB_RS19115 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPTB_RS19115 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPTB_RS19120 PF01042 Endoribonuclease L-PSP YPTB_RS19130 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS19135 PF02378 Phosphotransferase system, EIIC YPTB_RS19135 PF00367 phosphotransferase system, EIIB YPTB_RS19140 PF00128 Alpha amylase, catalytic domain YPTB_RS19140 PF11941 Domain of unknown function (DUF3459) YPTB_RS19145 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTB_RS19145 PF14760 Rnk N-terminus YPTB_RS19150 PF07361 Cytochrome b562 YPTB_RS19160 PF01523 Putative modulator of DNA gyrase YPTB_RS19165 PF04751 Protein of unknown function (DUF615) YPTB_RS19170 PF01337 Barstar (barnase inhibitor) YPTB_RS19180 PF00171 Aldehyde dehydrogenase family YPTB_RS19185 PF04632 Fusaric acid resistance protein family YPTB_RS19190 PF13533 Biotin-lipoyl like YPTB_RS19195 PF07869 Protein of unknown function (DUF1656) YPTB_RS19200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS19200 PF03466 LysR substrate binding domain YPTB_RS19205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPTB_RS19205 PF03466 LysR substrate binding domain YPTB_RS19215 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPTB_RS19215 PF18413 Neuraminidase-like domain YPTB_RS19220 PF03534 Salmonella virulence plasmid 65kDa B protein YPTB_RS19220 PF12255 Insecticide toxin TcdB middle/C-terminal region YPTB_RS19220 PF12256 Insecticide toxin TcdB middle/N-terminal region YPTB_RS19240 PF18807 Tripartite Tc toxins repeat YPTB_RS19240 PF14431 YwqJ-like deaminase YPTB_RS19245 PF01523 Putative modulator of DNA gyrase YPTB_RS19250 PF00795 Carbon-nitrogen hydrolase YPTB_RS19255 PF13502 AsmA-like C-terminal region YPTB_RS19255 PF13116 Protein of unknown function YPTB_RS19260 PF00575 S1 RNA binding domain YPTB_RS19260 PF10150 Ribonuclease E/G family YPTB_RS19265 PF02545 Maf-like protein YPTB_RS19270 PF04093 rod shape-determining protein MreD YPTB_RS19275 PF04085 rod shape-determining protein MreC YPTB_RS19285 PF17157 Gammaproteobacterial periplasmic sensor domain YPTB_RS19285 PF00563 EAL domain YPTB_RS19285 PF00990 Diguanylate cyclase, GGDEF domain YPTB_RS19290 PF08240 Alcohol dehydrogenase GroES-like domain YPTB_RS19290 PF00107 Zinc-binding dehydrogenase YPTB_RS19295 PF00174 Oxidoreductase molybdopterin binding domain YPTB_RS19300 PF01794 Ferric reductase like transmembrane component YPTB_RS19305 PF01220 Dehydroquinase class II YPTB_RS19310 PF00364 Biotin-requiring enzyme YPTB_RS19315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPTB_RS19315 PF02785 Biotin carboxylase C-terminal domain YPTB_RS19315 PF00289 Biotin carboxylase, N-terminal domain YPTB_RS19320 PF06196 Protein of unknown function (DUF997) YPTB_RS19325 PF00474 Sodium:solute symporter family YPTB_RS19335 PF01207 Dihydrouridine synthase (Dus) YPTB_RS19340 PF02954 Bacterial regulatory protein, Fis family YPTB_RS19355 PF07690 Major Facilitator Superfamily YPTB_RS19360 PF02627 Carboxymuconolactone decarboxylase family YPTB_RS19365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPTB_RS19365 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPTB_RS19370 PF00753 Metallo-beta-lactamase superfamily YPTB_RS19375 PF05433 Glycine zipper 2TM domain YPTB_RS19390 PF00313 'Cold-shock' DNA-binding domain YPTB_RS19395 PF00313 'Cold-shock' DNA-binding domain YPTB_RS19400 PF00313 'Cold-shock' DNA-binding domain YPTB_RS19420 PF02798 Glutathione S-transferase, N-terminal domain YPTB_RS19425 PF00571 CBS domain YPTB_RS19425 PF01380 SIS domain YPTB_RS19430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS19430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB_RS19440 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS19445 PF00005 ABC transporter YPTB_RS19455 PF03279 Bacterial lipid A biosynthesis acyltransferase YPTB_RS19465 PF00999 Sodium/hydrogen exchanger family YPTB_RS19470 PF00860 Permease family YPTB_RS19475 PF04221 RelB antitoxin YPTB_RS19480 PF00005 ABC transporter YPTB_RS19485 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS19490 PF00296 Luciferase-like monooxygenase YPTB_RS19495 PF09084 NMT1/THI5 like YPTB_RS19500 PF03358 NADPH-dependent FMN reductase YPTB_RS19505 PF01791 DeoC/LacD family aldolase YPTB_RS19510 PF00294 pfkB family carbohydrate kinase YPTB_RS19515 PF05025 RbsD / FucU transport protein family YPTB_RS19520 PF02311 AraC-like ligand binding domain YPTB_RS19520 PF12833 Helix-turn-helix domain YPTB_RS19525 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPTB_RS19525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPTB_RS19535 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS19545 PF05593 RHS Repeat YPTB_RS19545 PF03527 RHS protein YPTB_RS19555 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS19595 PF04717 Type VI secretion system, phage-baseplate injector YPTB_RS19625 PF17871 AAA lid domain YPTB_RS19625 PF00004 ATPase family associated with various cellular activities (AAA) YPTB_RS19625 PF07724 AAA domain (Cdc48 subfamily) YPTB_RS19625 PF10431 C-terminal, D2-small domain, of ClpB protein YPTB_RS19635 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPTB_RS19655 PF05947 Type VI secretion system, TssF YPTB_RS19665 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPTB_RS19675 PF05638 Type VI secretion system effector, Hcp YPTB_RS19685 PF07148 Maltose operon periplasmic protein precursor (MalM) YPTB_RS19690 PF02264 LamB porin YPTB_RS19695 PF17912 MalK OB fold domain YPTB_RS19695 PF00005 ABC transporter YPTB_RS19705 PF01547 Bacterial extracellular solute-binding protein YPTB_RS19710 PF14785 Maltose transport system permease protein MalF P2 domain YPTB_RS19710 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS19715 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS19720 PF06146 Phosphate-starvation-inducible E YPTB_RS19725 PF00342 Phosphoglucose isomerase YPTB_RS19730 PF01842 ACT domain YPTB_RS19730 PF00696 Amino acid kinase family YPTB_RS19740 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB_RS19740 PF08479 POTRA domain, ShlB-type YPTB_RS19740 PF17287 POTRA domain YPTB_RS19745 PF13332 Hemagglutinin repeat YPTB_RS19745 PF05860 haemagglutination activity domain YPTB_RS19750 PF02574 Homocysteine S-methyltransferase YPTB_RS19750 PF00809 Pterin binding enzyme YPTB_RS19750 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPTB_RS19750 PF02607 B12 binding domain YPTB_RS19750 PF02310 B12 binding domain YPTB_RS19755 PF09339 IclR helix-turn-helix domain YPTB_RS19755 PF01614 Bacterial transcriptional regulator YPTB_RS19760 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPTB_RS19765 PF00463 Isocitrate lyase family YPTB_RS19770 PF01274 Malate synthase YPTB_RS19775 PF04204 Homoserine O-succinyltransferase YPTB_RS19820 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB_RS19825 PF08501 Shikimate dehydrogenase substrate binding domain YPTB_RS19825 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPTB_RS19825 PF01488 Shikimate / quinate 5-dehydrogenase YPTB_RS19830 PF01300 Telomere recombination YPTB_RS19835 PF01396 Topoisomerase DNA binding C4 zinc finger YPTB_RS19840 PF04361 Protein of unknown function (DUF494) YPTB_RS19845 PF02481 DNA recombination-mediator protein A YPTB_RS19845 PF17782 DprA winged helix domain YPTB_RS19850 PF01327 Polypeptide deformylase YPTB_RS19855 PF00551 Formyl transferase YPTB_RS19855 PF02911 Formyl transferase, C-terminal domain YPTB_RS19860 PF01029 NusB family YPTB_RS19860 PF01189 16S rRNA methyltransferase RsmB/F YPTB_RS19865 PF02080 TrkA-C domain YPTB_RS19865 PF02254 TrkA-N domain YPTB_RS19870 PF01741 Large-conductance mechanosensitive channel, MscL YPTB_RS19875 PF03889 Alternative ribosome-rescue factor A YPTB_RS19880 PF13411 MerR HTH family regulatory protein YPTB_RS19885 PF01196 Ribosomal protein L17 YPTB_RS19890 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPTB_RS19890 PF01000 RNA polymerase Rpb3/RpoA insert domain YPTB_RS19890 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPTB_RS19895 PF00163 Ribosomal protein S4/S9 N-terminal domain YPTB_RS19895 PF01479 S4 domain YPTB_RS19900 PF00411 Ribosomal protein S11 YPTB_RS19905 PF00416 Ribosomal protein S13/S18 YPTB_RS19910 PF00444 Ribosomal protein L36 YPTB_RS19915 PF00344 SecY translocase YPTB_RS19920 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPTB_RS19925 PF00327 Ribosomal protein L30p/L7e YPTB_RS19930 PF00333 Ribosomal protein S5, N-terminal domain YPTB_RS19930 PF03719 Ribosomal protein S5, C-terminal domain YPTB_RS19935 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPTB_RS19940 PF00347 Ribosomal protein L6 YPTB_RS19945 PF00410 Ribosomal protein S8 YPTB_RS19950 PF00253 Ribosomal protein S14p/S29e YPTB_RS19955 PF00673 ribosomal L5P family C-terminus YPTB_RS19955 PF00281 Ribosomal protein L5 YPTB_RS19960 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPTB_RS19960 PF00467 KOW motif YPTB_RS19965 PF00238 Ribosomal protein L14p/L23e YPTB_RS19970 PF00366 Ribosomal protein S17 YPTB_RS19975 PF00831 Ribosomal L29 protein YPTB_RS19980 PF00252 Ribosomal protein L16p/L10e YPTB_RS19985 PF00189 Ribosomal protein S3, C-terminal domain YPTB_RS19985 PF07650 KH domain YPTB_RS19990 PF00237 Ribosomal protein L22p/L17e YPTB_RS19995 PF00203 Ribosomal protein S19 YPTB_RS20000 PF03947 Ribosomal Proteins L2, C-terminal domain YPTB_RS20000 PF00181 Ribosomal Proteins L2, RNA binding domain YPTB_RS20005 PF00276 Ribosomal protein L23 YPTB_RS20010 PF00573 Ribosomal protein L4/L1 family YPTB_RS20015 PF00297 Ribosomal protein L3 YPTB_RS20020 PF00338 Ribosomal protein S10p/S20e YPTB_RS20025 PF00210 Ferritin-like domain YPTB_RS20030 PF04324 BFD-like [2Fe-2S] binding domain YPTB_RS20035 PF03143 Elongation factor Tu C-terminal domain YPTB_RS20035 PF03144 Elongation factor Tu domain 2 YPTB_RS20035 PF00009 Elongation factor Tu GTP binding domain YPTB_RS20040 PF00009 Elongation factor Tu GTP binding domain YPTB_RS20040 PF14492 Elongation Factor G, domain II YPTB_RS20040 PF00679 Elongation factor G C-terminus YPTB_RS20040 PF03144 Elongation factor Tu domain 2 YPTB_RS20040 PF03764 Elongation factor G, domain IV YPTB_RS20045 PF00177 Ribosomal protein S7p/S5e YPTB_RS20050 PF00164 Ribosomal protein S12/S23 YPTB_RS20055 PF04077 DsrH like protein YPTB_RS20060 PF02635 DsrE/DsrF-like family YPTB_RS20065 PF02635 DsrE/DsrF-like family YPTB_RS20070 PF08348 YheO-like PAS domain YPTB_RS20070 PF13309 HTH domain YPTB_RS20075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB_RS20075 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPTB_RS20080 PF04102 SlyX YPTB_RS20085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPTB_RS20090 PF09526 Probable metal-binding protein (DUF2387) YPTB_RS20095 PF02254 TrkA-N domain YPTB_RS20095 PF00999 Sodium/hydrogen exchanger family YPTB_RS20100 PF02525 Flavodoxin-like fold YPTB_RS20105 PF00005 ABC transporter YPTB_RS20105 PF12848 ABC transporter YPTB_RS20110 PF00535 Glycosyl transferase family 2 YPTB_RS20120 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPTB_RS20125 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS20130 PF00005 ABC transporter YPTB_RS20135 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPTB_RS20140 PF01810 LysE type translocator YPTB_RS20145 PF00561 alpha/beta hydrolase fold YPTB_RS20150 PF06794 Uncharacterised protein family (UPF0270) YPTB_RS20155 PF00485 Phosphoribulokinase / Uridine kinase family YPTB_RS20165 PF02566 OsmC-like protein YPTB_RS20170 PF00027 Cyclic nucleotide-binding domain YPTB_RS20170 PF13545 Crp-like helix-turn-helix domain YPTB_RS20175 PF12805 FUSC-like inner membrane protein yccS YPTB_RS20180 PF00202 Aminotransferase class-III YPTB_RS20185 PF00117 Glutamine amidotransferase class-I YPTB_RS20190 PF05872 Bacterial protein of unknown function (DUF853) YPTB_RS20195 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPTB_RS20200 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPTB_RS20200 PF02056 Family 4 glycosyl hydrolase YPTB_RS20205 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS20215 PF07690 Major Facilitator Superfamily YPTB_RS20220 PF07969 Amidohydrolase family YPTB_RS20225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPTB_RS20225 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPTB_RS20225 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS20225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPTB_RS20225 PF04324 BFD-like [2Fe-2S] binding domain YPTB_RS20230 PF13806 Rieske-like [2Fe-2S] domain YPTB_RS20235 PF01226 Formate/nitrite transporter YPTB_RS20240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPTB_RS20240 PF14824 Sirohaem biosynthesis protein central YPTB_RS20240 PF10414 Sirohaem synthase dimerisation region YPTB_RS20245 PF00579 tRNA synthetases class I (W and Y) YPTB_RS20250 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS20255 PF00834 Ribulose-phosphate 3 epimerase family YPTB_RS20260 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPTB_RS20265 PF05036 Sporulation related domain YPTB_RS20270 PF01761 3-dehydroquinate synthase YPTB_RS20275 PF01202 Shikimate kinase YPTB_RS20280 PF03958 Bacterial type II/III secretion system short domain YPTB_RS20280 PF00263 Bacterial type II and III secretion system protein YPTB_RS20305 PF00912 Transglycosylase YPTB_RS20305 PF00905 Penicillin binding protein transpeptidase domain YPTB_RS20305 PF17092 Penicillin-binding protein OB-like domain YPTB_RS20310 PF00293 NUDIX domain YPTB_RS20320 PF07095 Intracellular growth attenuator protein IgaA YPTB_RS20325 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS20330 PF01479 S4 domain YPTB_RS20335 PF01430 Hsp33 protein YPTB_RS20340 PF01293 Phosphoenolpyruvate carboxykinase YPTB_RS20345 PF00672 HAMP domain YPTB_RS20345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS20345 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS20350 PF00072 Response regulator receiver domain YPTB_RS20350 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS20355 PF01272 Transcription elongation factor, GreA/GreB, C-term YPTB_RS20355 PF03449 Transcription elongation factor, N-terminal YPTB_RS20360 PF09371 Tex-like protein N-terminal domain YPTB_RS20360 PF17674 HHH domain YPTB_RS20360 PF16921 Tex protein YqgF-like domain YPTB_RS20360 PF00575 S1 RNA binding domain YPTB_RS20370 PF04023 FeoA domain YPTB_RS20375 PF07664 Ferrous iron transport protein B C terminus YPTB_RS20375 PF02421 Ferrous iron transport protein B YPTB_RS20375 PF17910 FeoB cytosolic helical domain YPTB_RS20375 PF07670 Nucleoside recognition YPTB_RS20380 PF09012 FeoC like transcriptional regulator YPTB_RS20385 PF07338 Protein of unknown function (DUF1471) YPTB_RS20390 PF00561 alpha/beta hydrolase fold YPTB_RS20395 PF00156 Phosphoribosyl transferase domain YPTB_RS20400 PF01106 NifU-like domain YPTB_RS20400 PF01521 Iron-sulphur cluster biosynthesis YPTB_RS20405 PF02446 4-alpha-glucanotransferase YPTB_RS20410 PF00343 Carbohydrate phosphorylase YPTB_RS20415 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS20415 PF17874 MalT-like TPR region YPTB_RS20420 PF00581 Rhodanese-like domain YPTB_RS20425 PF01694 Rhomboid family YPTB_RS20425 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPTB_RS20430 PF08220 DeoR-like helix-turn-helix domain YPTB_RS20430 PF00455 DeoR C terminal sensor domain YPTB_RS20455 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPTB_RS20455 PF01266 FAD dependent oxidoreductase YPTB_RS20460 PF00343 Carbohydrate phosphorylase YPTB_RS20465 PF00534 Glycosyl transferases group 1 YPTB_RS20465 PF08323 Starch synthase catalytic domain YPTB_RS20470 PF00483 Nucleotidyl transferase YPTB_RS20475 PF00128 Alpha amylase, catalytic domain YPTB_RS20475 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPTB_RS20475 PF18390 Glycogen debranching enzyme C-terminal domain YPTB_RS20480 PF00128 Alpha amylase, catalytic domain YPTB_RS20480 PF02806 Alpha amylase, C-terminal all-beta domain YPTB_RS20480 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPTB_RS20485 PF06580 Histidine kinase YPTB_RS20485 PF07694 5TMR of 5TMR-LYT YPTB_RS20490 PF11924 Inverse autotransporter, beta-domain YPTB_RS20490 PF09134 Invasin, domain 3 YPTB_RS20490 PF02369 Bacterial Ig-like domain (group 1) YPTB_RS20490 PF07979 Intimin C-type lectin domain YPTB_RS20495 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPTB_RS20495 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPTB_RS20500 PF01914 MarC family integral membrane protein YPTB_RS20535 PF01202 Shikimate kinase YPTB_RS20540 PF02447 GntP family permease YPTB_RS20545 PF00356 Bacterial regulatory proteins, lacI family YPTB_RS20545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPTB_RS20550 PF02678 Pirin YPTB_RS20550 PF17954 Quercetinase C-terminal cupin domain YPTB_RS20560 PF00072 Response regulator receiver domain YPTB_RS20560 PF00486 Transcriptional regulatory protein, C terminal YPTB_RS20570 PF01116 Fructose-bisphosphate aldolase class-II YPTB_RS20580 PF13407 Periplasmic binding protein domain YPTB_RS20585 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS20590 PF00005 ABC transporter YPTB_RS20595 PF00072 Response regulator receiver domain YPTB_RS20595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS20595 PF13188 PAS domain YPTB_RS20595 PF08448 PAS fold YPTB_RS20595 PF00512 His Kinase A (phospho-acceptor) domain YPTB_RS20605 PF01384 Phosphate transporter family YPTB_RS20610 PF10625 Universal stress protein B (UspB) YPTB_RS20615 PF00582 Universal stress protein family YPTB_RS20620 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPTB_RS20620 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPTB_RS20625 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPTB_RS20625 PF00413 Matrixin YPTB_RS20625 PF08548 Peptidase M10 serralysin C terminal YPTB_RS20630 PF04445 Putative SAM-dependent methyltransferase YPTB_RS20635 PF01432 Peptidase family M3 YPTB_RS20640 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPTB_RS20645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPTB_RS20645 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPTB_RS20650 PF17853 GGDEF-like domain YPTB_RS20650 PF05651 Putative sugar diacid recognition YPTB_RS20650 PF13556 PucR C-terminal helix-turn-helix domain YPTB_RS20655 PF02447 GntP family permease YPTB_RS20660 PF02595 Glycerate kinase family YPTB_RS20680 PF03631 Virulence factor BrkB YPTB_RS20685 PF02611 CDP-diacylglycerol pyrophosphatase YPTB_RS20690 PF05170 AsmA family YPTB_RS20695 PF00563 EAL domain YPTB_RS20700 PF01361 Tautomerase enzyme YPTB_RS20705 PF00294 pfkB family carbohydrate kinase YPTB_RS20710 PF05193 Peptidase M16 inactive domain YPTB_RS20710 PF00675 Insulinase (Peptidase family M16) YPTB_RS20715 PF00375 Sodium:dicarboxylate symporter family YPTB_RS20725 PF06917 Periplasmic pectate lyase YPTB_RS20730 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPTB_RS20735 PF00990 Diguanylate cyclase, GGDEF domain YPTB_RS20735 PF17154 Gammaproteobacterial periplasmic sensor domain YPTB_RS20735 PF00563 EAL domain YPTB_RS20735 PF00672 HAMP domain YPTB_RS20740 PF01270 Glycosyl hydrolases family 8 YPTB_RS20745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB_RS20745 PF00005 ABC transporter YPTB_RS20750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPTB_RS20750 PF00005 ABC transporter YPTB_RS20755 PF12911 N-terminal TM domain of oligopeptide transport permease C YPTB_RS20755 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS20760 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS20765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPTB_RS20775 PF17287 POTRA domain YPTB_RS20775 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPTB_RS20775 PF08479 POTRA domain, ShlB-type YPTB_RS20780 PF13332 Hemagglutinin repeat YPTB_RS20780 PF05860 haemagglutination activity domain YPTB_RS20780 PF04829 Pre-toxin domain with VENN motif YPTB_RS20780 PF05594 Haemagluttinin repeat YPTB_RS20790 PF07690 Major Facilitator Superfamily YPTB_RS20795 PF07730 Histidine kinase YPTB_RS20795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS20795 PF05231 MASE1 YPTB_RS20800 PF00196 Bacterial regulatory proteins, luxR family YPTB_RS20800 PF00072 Response regulator receiver domain YPTB_RS20805 PF00884 Sulfatase YPTB_RS20805 PF08019 Phosphoethanolamine transferase EptA/EptB YPTB_RS20810 PF12146 Serine aminopeptidase, S33 YPTB_RS20815 PF00324 Amino acid permease YPTB_RS20820 PF00221 Aromatic amino acid lyase YPTB_RS20825 PF01175 Urocanase Rossmann-like domain YPTB_RS20825 PF17391 Urocanase N-terminal domain YPTB_RS20825 PF17392 Urocanase C-terminal domain YPTB_RS20830 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS20835 PF00156 Phosphoribosyl transferase domain YPTB_RS20850 PF01497 Periplasmic binding protein YPTB_RS20855 PF01032 FecCD transport family YPTB_RS20860 PF01032 FecCD transport family YPTB_RS20865 PF00005 ABC transporter YPTB_RS20890 PF06755 CbtA_toxin of type IV toxin-antitoxin system YPTB_RS20895 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YPTB_RS20900 PF04002 RadC-like JAB domain YPTB_RS20920 PF01695 IstB-like ATP binding protein YPTB_RS20930 PF04471 Restriction endonuclease YPTB_RS20930 PF14338 Mrr N-terminal domain YPTB_RS20935 PF00665 Integrase core domain YPTB_RS20935 PF02796 Helix-turn-helix domain of resolvase YPTB_RS20940 PF01695 IstB-like ATP binding protein YPTB_RS20945 PF14338 Mrr N-terminal domain YPTB_RS20945 PF04471 Restriction endonuclease YPTB_RS20955 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPTB_RS20955 PF18766 SWI2/SNF2 ATPase YPTB_RS20955 PF11867 Domain of unknown function (DUF3387) YPTB_RS20965 PF01420 Type I restriction modification DNA specificity domain YPTB_RS20970 PF02384 N-6 DNA Methylase YPTB_RS20970 PF12161 HsdM N-terminal domain YPTB_RS20995 PF13356 Arm DNA-binding domain YPTB_RS20995 PF00589 Phage integrase family YPTB_RS20995 PF14659 Phage integrase, N-terminal SAM-like domain YPTB_RS21000 PF12833 Helix-turn-helix domain YPTB_RS21005 PF02653 Branched-chain amino acid transport system / permease component YPTB_RS21010 PF00005 ABC transporter YPTB_RS21015 PF13407 Periplasmic binding protein domain YPTB_RS21025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPTB_RS21025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPTB_RS21035 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPTB_RS21035 PF02753 Pili assembly chaperone PapD, C-terminal domain YPTB_RS21040 PF00577 Outer membrane usher protein YPTB_RS21040 PF13954 PapC N-terminal domain YPTB_RS21040 PF13953 PapC C-terminal domain YPTB_RS21045 PF00419 Fimbrial protein YPTB_RS21050 PF01757 Acyltransferase family YPTB_RS21060 PF13333 Integrase core domain YPTB_RS21060 PF13276 HTH-like domain YPTB_RS21060 PF00665 Integrase core domain YPTB_RS21065 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPTB_RS21070 PF13291 ACT domain YPTB_RS21070 PF00291 Pyridoxal-phosphate dependent enzyme YPTB_RS21075 PF12566 Protein of unknown function (DUF3748) YPTB_RS21075 PF07676 WD40-like Beta Propeller Repeat YPTB_RS21080 PF07119 Protein of unknown function (DUF1375) YPTB_RS21085 PF00011 Hsp20/alpha crystallin family YPTB_RS21090 PF00011 Hsp20/alpha crystallin family YPTB_RS21095 PF06826 Predicted Permease Membrane Region YPTB_RS21095 PF02080 TrkA-C domain YPTB_RS21100 PF00155 Aminotransferase class I and II YPTB_RS21110 PF00128 Alpha amylase, catalytic domain YPTB_RS21115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPTB_RS21115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPTB_RS21125 PF00691 OmpA family YPTB_RS21125 PF13488 Glycine zipper YPTB_RS21135 PF03352 Methyladenine glycosylase YPTB_RS21140 PF02091 Glycyl-tRNA synthetase alpha subunit YPTB_RS21145 PF02092 Glycyl-tRNA synthetase beta subunit YPTB_RS21145 PF05746 DALR anticodon binding domain YPTB_RS21150 PF11254 Protein of unknown function (DUF3053) YPTB_RS21155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPTB_RS21155 PF02378 Phosphotransferase system, EIIC YPTB_RS21155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPTB_RS21160 PF08125 Mannitol dehydrogenase C-terminal domain YPTB_RS21160 PF01232 Mannitol dehydrogenase Rossmann domain YPTB_RS21165 PF05068 Mannitol repressor YPTB_RS21170 PF10928 Protein of unknown function (DUF2810) YPTB_RS21185 PF02203 Tar ligand binding domain homologue YPTB_RS21185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPTB_RS21185 PF00672 HAMP domain YPTB_RS21190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPTB_RS21190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPTB_RS21195 PF02634 FdhD/NarQ family YPTB_RS21200 PF01568 Molydopterin dinucleotide binding domain YPTB_RS21200 PF00384 Molybdopterin oxidoreductase YPTB_RS21200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB_RS21205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPTB_RS21205 PF01568 Molydopterin dinucleotide binding domain YPTB_RS21205 PF00384 Molybdopterin oxidoreductase YPTB_RS21210 PF13247 4Fe-4S dicluster domain YPTB_RS21210 PF09163 Formate dehydrogenase N, transmembrane YPTB_RS21215 PF01292 Prokaryotic cytochrome b561 YPTB_RS21220 PF04216 Protein involved in formate dehydrogenase formation YPTB_RS21225 PF03841 L-seryl-tRNA selenium transferase YPTB_RS21225 PF12390 Selenocysteine synthase N terminal YPTB_RS21230 PF09106 Elongation factor SelB, winged helix YPTB_RS21230 PF00009 Elongation factor Tu GTP binding domain YPTB_RS21230 PF03144 Elongation factor Tu domain 2 YPTB_RS21230 PF09107 Elongation factor SelB, winged helix YPTB_RS21235 PF01526 Tn3 transposase DDE domain YPTB_RS21235 PF13700 Domain of unknown function (DUF4158) YPTB_RS21260 PF07690 Major Facilitator Superfamily YPTB_RS21265 PF13333 Integrase core domain YPTB_RS21265 PF13276 HTH-like domain YPTB_RS21265 PF00665 Integrase core domain YPTB_RS21280 PF01751 Toprim domain YPTB_RS21280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPTB_RS21280 PF18053 DNA gyrase B subunit insert domain YPTB_RS21280 PF00986 DNA gyrase B subunit, carboxyl terminus YPTB_RS21280 PF00204 DNA gyrase B YPTB_RS21285 PF02463 RecF/RecN/SMC N terminal domain YPTB_RS21295 PF00712 DNA polymerase III beta subunit, N-terminal domain YPTB_RS21295 PF02767 DNA polymerase III beta subunit, central domain YPTB_RS21295 PF02768 DNA polymerase III beta subunit, C-terminal domain YPTB_RS21300 PF00308 Bacterial dnaA protein YPTB_RS21300 PF11638 DnaA N-terminal domain YPTB_RS21300 PF08299 Bacterial dnaA protein helix-turn-helix YPTB_RS21305 PF00468 Ribosomal protein L34 YPTB_RS21310 PF00825 Ribonuclease P YPTB_RS21315 PF14849 YidC periplasmic domain YPTB_RS21315 PF02096 60Kd inner membrane protein YPTB_RS21320 PF01926 50S ribosome-binding GTPase YPTB_RS21320 PF12631 MnmE helical domain YPTB_RS21320 PF10396 GTP-binding protein TrmE N-terminus YPTB_RS21325 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPTB_RS21325 PF07055 Enoyl reductase FAD binding domain YPTB_RS21325 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPTB_RS21340 PF00860 Permease family YPTB_RS21345 PF13419 Haloacid dehalogenase-like hydrolase YPTB_RS21350 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS21355 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS21360 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPTB_RS21370 PF01895 PhoU domain YPTB_RS21375 PF00005 ABC transporter YPTB_RS21380 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS21385 PF00528 Binding-protein-dependent transport system inner membrane component YPTB_RS21390 PF12849 PBP superfamily domain YPTB_RS21395 PF01380 SIS domain YPTB_RS21400 PF00132 Bacterial transferase hexapeptide (six repeats) YPTB_RS21400 PF12804 MobA-like NTP transferase domain YPTB_RS21405 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPTB_RS21405 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPTB_RS21410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB_RS21410 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPTB_RS21415 PF00231 ATP synthase YPTB_RS21420 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPTB_RS21420 PF00306 ATP synthase alpha/beta chain, C terminal domain YPTB_RS21420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPTB_RS21425 PF00213 ATP synthase delta (OSCP) subunit YPTB_RS21430 PF00430 ATP synthase B/B' CF(0) YPTB_RS21435 PF00137 ATP synthase subunit C YPTB_RS21440 PF00119 ATP synthase A chain YPTB_RS21445 PF03899 ATP synthase I chain YPTB_RS21450 PF02527 rRNA small subunit methyltransferase G YPTB_RS21455 PF13932 GidA associated domain YPTB_RS21455 PF01134 Glucose inhibited division protein A YPTB_RS21630 PF01926 50S ribosome-binding GTPase YPTB_RS21710 PF05170 AsmA family YPTB_RS21925 PF02705 K+ potassium transporter YPTB_RS22020 PF01367 5'-3' exonuclease, C-terminal SAM fold YPTB_RS22020 PF01612 3'-5' exonuclease YPTB_RS22020 PF00476 DNA polymerase family A YPTB_RS22020 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPTB_RS22180 PF13358 DDE superfamily endonuclease YPTB_RS22180 PF13592 Winged helix-turn helix YPTB_RS22190 PF13018 Extended Signal Peptide of Type V secretion system YPTB_RS22190 PF13332 Hemagglutinin repeat YPTB_RS22190 PF05860 haemagglutination activity domain YPTB_RS22190 PF04829 Pre-toxin domain with VENN motif YPTB_RS22195 PF05593 RHS Repeat YPTB_RS22195 PF03527 RHS protein