YPTB_RS00080	SM00344	helix_turn_helix ASNC type
YPTB_RS00090	SM00327	von Willebrand factor (vWF) type A domain
YPTB_RS00095	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS00125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS00125	SM00895	YPTB_RS00125
YPTB_RS00185	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
YPTB_RS00185	SM00474	3'-5' exonuclease
YPTB_RS00185	SM00475	5'-3' exonuclease
YPTB_RS00185	SM00482	DNA polymerase A domain
YPTB_RS00200	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS00205	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS00205	SM00448	cheY-homologous receiver domain
YPTB_RS00210	SM00091	PAS domain
YPTB_RS00210	SM00387	Histidine kinase-like ATPases
YPTB_RS00210	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS00215	SM01230	YPTB_RS00215
YPTB_RS00265	SM00487	DEAD-like helicases superfamily
YPTB_RS00265	SM00490	helicase superfamily c-terminal domain
YPTB_RS00275	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YPTB_RS00275	SM00954	Region found in RelA / SpoT proteins
YPTB_RS00280	SM01409	YPTB_RS00280
YPTB_RS00285	SM00072	Guanylate kinase homologues.
YPTB_RS00290	SM00532	Ligase N family
YPTB_RS00345	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
YPTB_RS00345	SM01232	YPTB_RS00345
YPTB_RS00385	SM00829	Enoylreductase
YPTB_RS00405	SM00450	Rhodanese Homology Domain
YPTB_RS00430	SM00971	Serine acetyltransferase, N-terminal
YPTB_RS00440	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS00445	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS00445	SM00387	Histidine kinase-like ATPases
YPTB_RS00445	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS00450	SM00448	cheY-homologous receiver domain
YPTB_RS00450	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS00550	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS00585	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS00585	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS00600	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS00610	SM00487	DEAD-like helicases superfamily
YPTB_RS00610	SM00490	helicase superfamily c-terminal domain
YPTB_RS00665	SM00859	Semialdehyde dehydrogenase, NAD binding domain
YPTB_RS00695	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS00800	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS00825	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01005	SM00487	DEAD-like helicases superfamily
YPTB_RS01005	SM00490	helicase superfamily c-terminal domain
YPTB_RS01015	SM00357	Cold shock protein domain
YPTB_RS01015	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01015	SM00959	Rho termination factor, N-terminal domain
YPTB_RS01035	SM00984	UDP binding domain
YPTB_RS01145	SM01219	YPTB_RS01145
YPTB_RS01215	SM00341	Helicase and RNase D C-terminal
YPTB_RS01215	SM00487	DEAD-like helicases superfamily
YPTB_RS01215	SM00490	helicase superfamily c-terminal domain
YPTB_RS01215	SM00956	YPTB_RS01215
YPTB_RS01320	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01320	SM00962	SRP54-type protein, GTPase domain
YPTB_RS01320	SM00963	SRP54-type protein, helical bundle domain
YPTB_RS01325	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01360	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01365	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01420	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01440	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS01525	SM01004	Delta-aminolevulinic acid dehydratase
YPTB_RS01530	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
YPTB_RS01530	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
YPTB_RS01655	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
YPTB_RS01655	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
YPTB_RS01660	SM00649	Ribosomal protein L11/L12
YPTB_RS01685	SM00663	RNA polymerase I subunit A N-terminus
YPTB_RS01695	SM00876	Biotin and Thiamin Synthesis associated domain
YPTB_RS01760	SM00411	bacterial (prokaryotic) histone like domain
YPTB_RS01770	SM01209	YPTB_RS01770
YPTB_RS01770	SM01210	YPTB_RS01770
YPTB_RS01775	SM00798	AICARFT/IMPCHase bienzyme
YPTB_RS01775	SM00851	MGS-like domain
YPTB_RS01815	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01850	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS01850	SM00448	cheY-homologous receiver domain
YPTB_RS01855	SM00387	Histidine kinase-like ATPases
YPTB_RS01855	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS01855	SM00448	cheY-homologous receiver domain
YPTB_RS01875	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS01915	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS01980	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS02020	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS02120	SM00060	Fibronectin type 3 domain
YPTB_RS02125	SM00869	Autotransporter beta-domain
YPTB_RS02140	SM00563	Phosphate acyltransferases
YPTB_RS02170	SM00829	Enoylreductase
YPTB_RS02175	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS02180	SM01005	Alanine racemase, C-terminal domain
YPTB_RS02215	SM01007	Class II Aldolase and Adducin N-terminal domain
YPTB_RS02240	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS02245	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS02270	SM01276	YPTB_RS02270
YPTB_RS02295	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YPTB_RS02325	SM00883	Chaperonin 10 Kd subunit
YPTB_RS02345	SM00841	Elongation factor P, C-terminal
YPTB_RS02345	SM01185	YPTB_RS02345
YPTB_RS02405	SM00479	YPTB_RS02405
YPTB_RS02445	SM00257	Lysin motif
YPTB_RS02445	SM00646	YPTB_RS02445
YPTB_RS02450	SM00853	MutL C terminal dimerisation domain
YPTB_RS02450	SM01340	YPTB_RS02450
YPTB_RS02470	SM00244	prohibitin homologues
YPTB_RS02475	SM00244	prohibitin homologues
YPTB_RS02485	SM00788	Adenylosuccinate synthetase
YPTB_RS02495	SM00316	Ribosomal protein S1-like RNA-binding domain
YPTB_RS02495	SM00357	Cold shock protein domain
YPTB_RS02495	SM00955	YPTB_RS02495
YPTB_RS02500	SM00967	RNA 2'-O ribose methyltransferase substrate binding
YPTB_RS02585	SM00116	Domain in cystathionine beta-synthase and other proteins.
YPTB_RS02585	SM01091	Transporter associated domain
YPTB_RS02680	SM00387	Histidine kinase-like ATPases
YPTB_RS02680	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS02685	SM00448	cheY-homologous receiver domain
YPTB_RS02685	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS02700	SM01103	YPTB_RS02700
YPTB_RS02710	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS02745	SM00316	Ribosomal protein S1-like RNA-binding domain
YPTB_RS02745	SM00322	K homology RNA-binding domain
YPTB_RS02765	SM01387	YPTB_RS02765
YPTB_RS02770	SM00316	Ribosomal protein S1-like RNA-binding domain
YPTB_RS02770	SM00322	K homology RNA-binding domain
YPTB_RS02775	SM00028	Tetratricopeptide repeats
YPTB_RS02780	SM00487	DEAD-like helicases superfamily
YPTB_RS02780	SM00490	helicase superfamily c-terminal domain
YPTB_RS02795	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS02880	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS02895	SM00859	Semialdehyde dehydrogenase, NAD binding domain
YPTB_RS02900	SM00849	Metallo-beta-lactamase superfamily
YPTB_RS02905	SM00072	Guanylate kinase homologues.
YPTB_RS02915	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS02920	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS02945	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS02945	SM00866	YPTB_RS02945
YPTB_RS02960	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS02965	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS03040	SM00487	DEAD-like helicases superfamily
YPTB_RS03070	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS03105	SM01133	YPTB_RS03105
YPTB_RS03125	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS03175	SM00450	Rhodanese Homology Domain
YPTB_RS03220	SM00267	diguanylate cyclase
YPTB_RS03265	SM00749	bacterial OsmY and nodulation domain
YPTB_RS03290	SM01133	YPTB_RS03290
YPTB_RS03295	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
YPTB_RS03320	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS03325	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS03335	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS03345	SM00267	diguanylate cyclase
YPTB_RS03355	SM00831	Cation transporter/ATPase, N-terminus
YPTB_RS03375	SM00855	Phosphoglycerate mutase family
YPTB_RS03380	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS03380	SM00871	Bacterial transcription activator, effector binding domain
YPTB_RS03390	SM00448	cheY-homologous receiver domain
YPTB_RS03390	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS03420	SM00852	Probable molybdopterin binding domain
YPTB_RS03445	SM00271	DnaJ molecular chaperone homology domain
YPTB_RS03470	SM00904	Riboflavin kinase
YPTB_RS03495	SM01321	YPTB_RS03495
YPTB_RS03505	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
YPTB_RS03510	SM00851	MGS-like domain
YPTB_RS03510	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
YPTB_RS03555	SM00650	Ribosomal RNA adenine dimethylases
YPTB_RS03575	SM00271	DnaJ molecular chaperone homology domain
YPTB_RS03625	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS03625	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS03680	SM00487	DEAD-like helicases superfamily
YPTB_RS03680	SM00490	helicase superfamily c-terminal domain
YPTB_RS03685	SM00486	DNA polymerase type-B family
YPTB_RS03695	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS03750	SM01329	YPTB_RS03750
YPTB_RS03755	SM00917	LeuA allosteric (dimerisation) domain
YPTB_RS03800	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS03875	SM00842	Cell division protein FtsA
YPTB_RS03880	SM00864	Tubulin/FtsZ family, GTPase domain
YPTB_RS03880	SM00865	Tubulin/FtsZ family, C-terminal domain
YPTB_RS03900	SM00957	SecA DEAD-like domain
YPTB_RS03900	SM00958	SecA preprotein cross-linking domain
YPTB_RS03915	SM01321	YPTB_RS03915
YPTB_RS03940	SM01240	YPTB_RS03940
YPTB_RS03970	SM00644	YPTB_RS03970
YPTB_RS03985	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS03985	SM00895	YPTB_RS03985
YPTB_RS04045	SM00947	Carbonic anhydrase
YPTB_RS04050	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS04110	SM00487	DEAD-like helicases superfamily
YPTB_RS04110	SM00490	helicase superfamily c-terminal domain
YPTB_RS04110	SM00847	Helicase associated domain (HA2)  Add an annotation
YPTB_RS04120	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS04165	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YPTB_RS04170	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
YPTB_RS04175	SM00073	Histidine Phosphotransfer domain
YPTB_RS04175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS04175	SM00387	Histidine kinase-like ATPases
YPTB_RS04175	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS04175	SM00448	cheY-homologous receiver domain
YPTB_RS04180	SM00954	Region found in RelA / SpoT proteins
YPTB_RS04200	SM01192	YPTB_RS04200
YPTB_RS04200	SM01193	YPTB_RS04200
YPTB_RS04305	SM00257	Lysin motif
YPTB_RS04320	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
YPTB_RS04320	SM00534	ATPase domain of DNA mismatch repair MUTS family
YPTB_RS04335	SM00829	Enoylreductase
YPTB_RS04350	SM01120	YPTB_RS04350
YPTB_RS04365	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
YPTB_RS04380	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS04385	SM01235	YPTB_RS04385
YPTB_RS04445	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS04455	SM00420	helix_turn_helix, Deoxyribose operon repressor
YPTB_RS04455	SM01134	YPTB_RS04455
YPTB_RS04460	SM01007	Class II Aldolase and Adducin N-terminal domain
YPTB_RS04465	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YPTB_RS04510	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS04525	SM00861	Transketolase, pyrimidine binding domain
YPTB_RS04555	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS04565	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
YPTB_RS04615	SM01091	Transporter associated domain
YPTB_RS04625	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS04625	SM00962	SRP54-type protein, GTPase domain
YPTB_RS04625	SM00963	SRP54-type protein, helical bundle domain
YPTB_RS04660	SM00448	cheY-homologous receiver domain
YPTB_RS04660	SM00850	LytTr DNA-binding domain
YPTB_RS04670	SM00830	Chorismate mutase type II
YPTB_RS04675	SM00830	Chorismate mutase type II
YPTB_RS04690	SM00363	S4 RNA-binding domain
YPTB_RS04700	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS04700	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS04745	SM00155	Phospholipase D. Active site motifs.
YPTB_RS04750	SM00881	CoA binding domain
YPTB_RS04755	SM01144	YPTB_RS04755
YPTB_RS04765	SM00967	RNA 2'-O ribose methyltransferase substrate binding
YPTB_RS04780	SM00347	helix_turn_helix multiple antibiotic resistance protein
YPTB_RS04825	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS04840	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS04865	SM01007	Class II Aldolase and Adducin N-terminal domain
YPTB_RS04895	SM00710	Parallel beta-helix repeats
YPTB_RS04895	SM00912	haemagglutination activity domain
YPTB_RS04940	SM00900	YPTB_RS04940
YPTB_RS04995	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
YPTB_RS05020	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
YPTB_RS05095	SM00448	cheY-homologous receiver domain
YPTB_RS05095	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS05100	SM00091	PAS domain
YPTB_RS05100	SM00387	Histidine kinase-like ATPases
YPTB_RS05100	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS05120	SM00642	Alpha-amylase domain
YPTB_RS05160	SM01323	YPTB_RS05160
YPTB_RS05215	SM00861	Transketolase, pyrimidine binding domain
YPTB_RS05235	SM00981	YPTB_RS05235
YPTB_RS05320	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS05320	SM00994	ClpX C4-type zinc finger
YPTB_RS05320	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS05325	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS05325	SM00464	Found in ATP-dependent protease La (LON)
YPTB_RS05330	SM00411	bacterial (prokaryotic) histone like domain
YPTB_RS05370	SM00344	helix_turn_helix ASNC type
YPTB_RS05375	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS05380	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS05385	SM00938	Nitrogen regulatory protein P-II
YPTB_RS05480	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS05490	SM00493	YPTB_RS05490
YPTB_RS05495	SM00387	Histidine kinase-like ATPases
YPTB_RS05645	SM00422	helix_turn_helix, mercury resistance
YPTB_RS05655	SM00244	prohibitin homologues
YPTB_RS05665	SM00822	YPTB_RS05665
YPTB_RS05675	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS05690	SM01001	AIR carboxylase
YPTB_RS05705	SM00840	YPTB_RS05705
YPTB_RS05765	SM00563	Phosphate acyltransferases
YPTB_RS05775	SM00195	Dual specificity phosphatase, catalytic domain
YPTB_RS05775	SM00404	Protein tyrosine phosphatase, catalytic domain motif
YPTB_RS05820	SM01217	YPTB_RS05820
YPTB_RS05835	SM00363	S4 RNA-binding domain
YPTB_RS05840	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
YPTB_RS05850	SM00869	Autotransporter beta-domain
YPTB_RS05895	SM01359	YPTB_RS05895
YPTB_RS05895	SM01360	YPTB_RS05895
YPTB_RS05925	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS05960	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS05985	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS05995	SM00357	Cold shock protein domain
YPTB_RS06015	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS06030	SM00936	Penicillin-binding protein 5, C-terminal domain 
YPTB_RS06085	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06100	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS06110	SM00116	Domain in cystathionine beta-synthase and other proteins.
YPTB_RS06110	SM01091	Transporter associated domain
YPTB_RS06125	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS06215	SM01081	Putative carbohydrate binding domain
YPTB_RS06270	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06340	SM00861	Transketolase, pyrimidine binding domain
YPTB_RS06355	SM00881	CoA binding domain
YPTB_RS06470	SM00855	Phosphoglycerate mutase family
YPTB_RS06510	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06535	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06555	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS06555	SM00876	Biotin and Thiamin Synthesis associated domain
YPTB_RS06575	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06580	SM00487	DEAD-like helicases superfamily
YPTB_RS06580	SM00490	helicase superfamily c-terminal domain
YPTB_RS06600	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS06670	SM00091	PAS domain
YPTB_RS06670	SM00387	Histidine kinase-like ATPases
YPTB_RS06670	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS06675	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06675	SM00448	cheY-homologous receiver domain
YPTB_RS06710	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06725	SM00487	DEAD-like helicases superfamily
YPTB_RS06725	SM00490	helicase superfamily c-terminal domain
YPTB_RS06755	SM01118	YPTB_RS06755
YPTB_RS06760	SM00507	HNH nucleases
YPTB_RS06775	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06820	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06835	SM00450	Rhodanese Homology Domain
YPTB_RS06850	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS06885	SM00487	DEAD-like helicases superfamily
YPTB_RS06885	SM00488	YPTB_RS06885
YPTB_RS06885	SM00491	YPTB_RS06885
YPTB_RS06890	SM01060	YPTB_RS06890
YPTB_RS06905	SM00852	Probable molybdopterin binding domain
YPTB_RS06935	SM00434	DNA Topoisomerase IV
YPTB_RS06945	SM00387	Histidine kinase-like ATPases
YPTB_RS06945	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS06945	SM00448	cheY-homologous receiver domain
YPTB_RS06950	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS06950	SM00448	cheY-homologous receiver domain
YPTB_RS06955	SM00387	Histidine kinase-like ATPases
YPTB_RS07005	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
YPTB_RS07005	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS07020	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS07040	SM00420	helix_turn_helix, Deoxyribose operon repressor
YPTB_RS07040	SM01134	YPTB_RS07040
YPTB_RS07205	SM00487	DEAD-like helicases superfamily
YPTB_RS07205	SM00490	helicase superfamily c-terminal domain
YPTB_RS07210	SM00363	S4 RNA-binding domain
YPTB_RS07225	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07245	SM00052	Putative diguanylate phosphodiesterase
YPTB_RS07255	SM00014	Acid phosphatase homologues
YPTB_RS07260	SM00833	Cobalamin synthesis protein cobW C-terminal domain
YPTB_RS07270	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS07270	SM00895	YPTB_RS07270
YPTB_RS07285	SM00841	Elongation factor P, C-terminal
YPTB_RS07285	SM01185	YPTB_RS07285
YPTB_RS07335	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07365	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS07390	SM00518	AP endonuclease family 2
YPTB_RS07420	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07455	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07455	SM00930	YPTB_RS07455
YPTB_RS07465	SM00936	Penicillin-binding protein 5, C-terminal domain 
YPTB_RS07480	SM00420	helix_turn_helix, Deoxyribose operon repressor
YPTB_RS07480	SM01134	YPTB_RS07480
YPTB_RS07485	SM01133	YPTB_RS07485
YPTB_RS07490	SM00014	Acid phosphatase homologues
YPTB_RS07530	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07555	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS07555	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
YPTB_RS07565	SM00244	prohibitin homologues
YPTB_RS07580	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07615	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS07615	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
YPTB_RS07620	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07625	SM00830	Chorismate mutase type II
YPTB_RS07685	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07690	SM00357	Cold shock protein domain
YPTB_RS07700	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07700	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS07705	SM00316	Ribosomal protein S1-like RNA-binding domain
YPTB_RS07715	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07720	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07735	SM00344	helix_turn_helix ASNC type
YPTB_RS07740	SM00843	YPTB_RS07740
YPTB_RS07750	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07790	SM00870	YPTB_RS07790
YPTB_RS07820	SM00316	Ribosomal protein S1-like RNA-binding domain
YPTB_RS07825	SM00411	bacterial (prokaryotic) histone like domain
YPTB_RS07830	SM00849	Metallo-beta-lactamase superfamily
YPTB_RS07835	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07845	SM01150	YPTB_RS07845
YPTB_RS07855	SM00357	Cold shock protein domain
YPTB_RS07910	SM00849	Metallo-beta-lactamase superfamily
YPTB_RS07955	SM00981	YPTB_RS07955
YPTB_RS07960	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS07990	SM00825	Beta-ketoacyl synthase
YPTB_RS08045	SM00851	MGS-like domain
YPTB_RS08055	SM00881	CoA binding domain
YPTB_RS08060	SM00992	Hemimethylated DNA-binding protein YccV like
YPTB_RS08065	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
YPTB_RS08125	SM00825	Beta-ketoacyl synthase
YPTB_RS08165	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
YPTB_RS08205	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08205	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS08235	SM00257	Lysin motif
YPTB_RS08300	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08315	SM00852	Probable molybdopterin binding domain
YPTB_RS08325	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08355	SM00829	Enoylreductase
YPTB_RS08385	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08400	SM00919	Malic enzyme, NAD binding domain
YPTB_RS08400	SM01274	YPTB_RS08400
YPTB_RS08465	SM01091	Transporter associated domain
YPTB_RS08485	SM01006	Siderophore biosynthesis protein domain
YPTB_RS08495	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08535	SM01350	YPTB_RS08535
YPTB_RS08545	SM01321	YPTB_RS08545
YPTB_RS08615	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08650	SM00634	Bacterial Ig-like domain (group 1)
YPTB_RS08675	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
YPTB_RS08725	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08780	SM00822	YPTB_RS08780
YPTB_RS08780	SM00823	Phosphopantetheine attachment site
YPTB_RS08780	SM00824	Thioesterase
YPTB_RS08780	SM00825	Beta-ketoacyl synthase
YPTB_RS08780	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
YPTB_RS08785	SM00823	Phosphopantetheine attachment site
YPTB_RS08790	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS08795	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08800	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08825	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS08825	SM00448	cheY-homologous receiver domain
YPTB_RS08865	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS08890	SM00090	RIO-like kinase
YPTB_RS08895	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS08905	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS08960	SM00357	Cold shock protein domain
YPTB_RS08980	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YPTB_RS08980	SM00091	PAS domain
YPTB_RS08980	SM00267	diguanylate cyclase
YPTB_RS09015	SM01091	Transporter associated domain
YPTB_RS09020	SM00347	helix_turn_helix multiple antibiotic resistance protein
YPTB_RS09070	SM00903	Flavin reductase like domain
YPTB_RS09100	SM00487	DEAD-like helicases superfamily
YPTB_RS09100	SM00490	helicase superfamily c-terminal domain
YPTB_RS09110	SM01022	YPTB_RS09110
YPTB_RS09190	SM00634	Bacterial Ig-like domain (group 1)
YPTB_RS09205	SM00858	YPTB_RS09205
YPTB_RS09250	SM00047	Lysozyme subfamily 2
YPTB_RS09270	SM01007	Class II Aldolase and Adducin N-terminal domain
YPTB_RS09285	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS09350	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS09390	SM00478	endonuclease III
YPTB_RS09395	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YPTB_RS09400	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS09445	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS09445	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
YPTB_RS09455	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS09540	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS09540	SM00448	cheY-homologous receiver domain
YPTB_RS09545	SM00278	Helix-hairpin-helix DNA-binding motif class 1
YPTB_RS09545	SM00465	GIY-YIG type nucleases (URI domain)
YPTB_RS09855	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS09925	SM00990	YPTB_RS09925
YPTB_RS09970	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS10260	SM00479	YPTB_RS10260
YPTB_RS10300	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS10305	SM00974	YPTB_RS10305
YPTB_RS10485	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS10485	SM00866	YPTB_RS10485
YPTB_RS10515	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS10555	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS10555	SM00387	Histidine kinase-like ATPases
YPTB_RS10555	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS10555	SM00448	cheY-homologous receiver domain
YPTB_RS10560	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS10560	SM00448	cheY-homologous receiver domain
YPTB_RS10625	SM00420	helix_turn_helix, Deoxyribose operon repressor
YPTB_RS10625	SM01134	YPTB_RS10625
YPTB_RS10670	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS10735	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS10735	SM00387	Histidine kinase-like ATPases
YPTB_RS10740	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS10790	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS10790	SM00866	YPTB_RS10790
YPTB_RS10860	SM00671	Sel1-like repeats.
YPTB_RS10865	SM00671	Sel1-like repeats.
YPTB_RS10920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS10920	SM00387	Histidine kinase-like ATPases
YPTB_RS10920	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS10925	SM00448	cheY-homologous receiver domain
YPTB_RS10925	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS10970	SM01400	YPTB_RS10970
YPTB_RS10995	SM00937	YPTB_RS10995
YPTB_RS11020	SM01321	YPTB_RS11020
YPTB_RS11060	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS11080	SM00481	DNA polymerase alpha chain like domain
YPTB_RS11125	SM00912	haemagglutination activity domain
YPTB_RS11130	SM00836	DALR anticodon binding domain
YPTB_RS11130	SM01016	Arginyl tRNA synthetase N terminal dom
YPTB_RS11185	SM00278	Helix-hairpin-helix DNA-binding motif class 1
YPTB_RS11190	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS11200	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS11210	SM00257	Lysin motif
YPTB_RS11260	SM00487	DEAD-like helicases superfamily
YPTB_RS11260	SM00491	YPTB_RS11260
YPTB_RS11280	SM00341	Helicase and RNase D C-terminal
YPTB_RS11280	SM00474	3'-5' exonuclease
YPTB_RS11350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS11390	SM00763	PrkA AAA domain
YPTB_RS11405	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPTB_RS11425	SM00870	YPTB_RS11425
YPTB_RS11445	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
YPTB_RS11445	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
YPTB_RS11445	SM00493	YPTB_RS11445
YPTB_RS11495	SM00448	cheY-homologous receiver domain
YPTB_RS11500	SM00984	UDP binding domain
YPTB_RS11505	SM00528	Domain in histone-like proteins of HNS family
YPTB_RS11540	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS11545	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS11560	SM00155	Phospholipase D. Active site motifs.
YPTB_RS11615	SM00749	bacterial OsmY and nodulation domain
YPTB_RS11660	SM00481	DNA polymerase alpha chain like domain
YPTB_RS11670	SM00363	S4 RNA-binding domain
YPTB_RS11680	SM00822	YPTB_RS11680
YPTB_RS11700	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
YPTB_RS11700	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
YPTB_RS11700	SM00493	YPTB_RS11700
YPTB_RS11725	SM00014	Acid phosphatase homologues
YPTB_RS11735	SM00028	Tetratricopeptide repeats
YPTB_RS11745	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
YPTB_RS11760	SM01007	Class II Aldolase and Adducin N-terminal domain
YPTB_RS11785	SM00357	Cold shock protein domain
YPTB_RS11785	SM00955	YPTB_RS11785
YPTB_RS11800	SM00478	endonuclease III
YPTB_RS11800	SM00525	YPTB_RS11800
YPTB_RS11810	SM00900	YPTB_RS11810
YPTB_RS11820	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS11845	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS11855	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS11875	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS11885	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS11920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS11920	SM00866	YPTB_RS11920
YPTB_RS11985	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12020	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS12040	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12060	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12115	SM00098	Alkaline phosphatase homologues
YPTB_RS12125	SM00100	Cyclic nucleotide-monophosphate binding domain
YPTB_RS12125	SM00419	helix_turn_helix, cAMP Regulatory protein
YPTB_RS12140	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
YPTB_RS12140	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
YPTB_RS12165	SM00448	cheY-homologous receiver domain
YPTB_RS12165	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS12170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS12170	SM00387	Histidine kinase-like ATPases
YPTB_RS12170	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS12190	SM00867	YceI-like domain 
YPTB_RS12210	SM00020	Trypsin-like serine protease
YPTB_RS12215	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS12225	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12225	SM00487	DEAD-like helicases superfamily
YPTB_RS12225	SM00490	helicase superfamily c-terminal domain
YPTB_RS12225	SM00847	Helicase associated domain (HA2)  Add an annotation
YPTB_RS12285	SM00890	Domain of unknown function
YPTB_RS12300	SM00422	helix_turn_helix, mercury resistance
YPTB_RS12320	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
YPTB_RS12330	SM00091	PAS domain
YPTB_RS12330	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12340	SM00953	YPTB_RS12340
YPTB_RS12375	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12400	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12405	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12440	SM00363	S4 RNA-binding domain
YPTB_RS12465	SM00347	helix_turn_helix multiple antibiotic resistance protein
YPTB_RS12505	SM00479	YPTB_RS12505
YPTB_RS12530	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS12605	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12705	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12725	SM00411	bacterial (prokaryotic) histone like domain
YPTB_RS12730	SM00873	B3/4 domain
YPTB_RS12730	SM00874	tRNA synthetase B5 domain
YPTB_RS12730	SM00896	Ferredoxin-fold anticodon binding domain
YPTB_RS12755	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
YPTB_RS12790	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12855	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS12880	SM00644	YPTB_RS12880
YPTB_RS12885	SM00346	helix_turn_helix isocitrate lyase regulation
YPTB_RS12930	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
YPTB_RS12930	SM00245	tail specific protease
YPTB_RS12935	SM00945	ProQ/FINO family
YPTB_RS12955	SM00972	Spore Coat Protein U domain
YPTB_RS12960	SM00972	Spore Coat Protein U domain
YPTB_RS12965	SM00972	Spore Coat Protein U domain
YPTB_RS12980	SM00972	Spore Coat Protein U domain
YPTB_RS12990	SM01022	YPTB_RS12990
YPTB_RS13015	SM01005	Alanine racemase, C-terminal domain
YPTB_RS13030	SM00644	YPTB_RS13030
YPTB_RS13045	SM00448	cheY-homologous receiver domain
YPTB_RS13050	SM00448	cheY-homologous receiver domain
YPTB_RS13055	SM00138	Methyltransferase, chemotaxis proteins 
YPTB_RS13060	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
YPTB_RS13060	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS13060	SM00319	Homologues of the ligand binding domain of Tar
YPTB_RS13065	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
YPTB_RS13065	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS13065	SM00319	Homologues of the ligand binding domain of Tar
YPTB_RS13080	SM00260	Two component signalling adaptor domain
YPTB_RS13085	SM00073	Histidine Phosphotransfer domain
YPTB_RS13085	SM00260	Two component signalling adaptor domain
YPTB_RS13085	SM00387	Histidine kinase-like ATPases
YPTB_RS13085	SM01231	YPTB_RS13085
YPTB_RS13110	SM00831	Cation transporter/ATPase, N-terminus
YPTB_RS13125	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
YPTB_RS13125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS13125	SM00319	Homologues of the ligand binding domain of Tar
YPTB_RS13135	SM00357	Cold shock protein domain
YPTB_RS13140	SM01038	Beta galactosidase small chain
YPTB_RS13145	SM00829	Enoylreductase
YPTB_RS13155	SM00344	helix_turn_helix ASNC type
YPTB_RS13190	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YPTB_RS13190	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
YPTB_RS13200	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS13205	SM01329	YPTB_RS13205
YPTB_RS13240	SM00448	cheY-homologous receiver domain
YPTB_RS13240	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS13245	SM00387	Histidine kinase-like ATPases
YPTB_RS13245	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS13250	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
YPTB_RS13275	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS13285	SM00487	DEAD-like helicases superfamily
YPTB_RS13285	SM00490	helicase superfamily c-terminal domain
YPTB_RS13285	SM00982	YPTB_RS13285
YPTB_RS13285	SM01058	CarD-like/TRCF domain
YPTB_RS13420	SM00825	Beta-ketoacyl synthase
YPTB_RS13430	SM00822	YPTB_RS13430
YPTB_RS13435	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
YPTB_RS13465	SM00363	S4 RNA-binding domain
YPTB_RS13470	SM00316	Ribosomal protein S1-like RNA-binding domain
YPTB_RS13505	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS13515	SM00450	Rhodanese Homology Domain
YPTB_RS13565	SM01091	Transporter associated domain
YPTB_RS13580	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS13680	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS13690	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS13725	SM00912	haemagglutination activity domain
YPTB_RS13750	SM01329	YPTB_RS13750
YPTB_RS13760	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS13770	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS13780	SM00829	Enoylreductase
YPTB_RS13835	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS13835	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
YPTB_RS13845	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS13850	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YPTB_RS13850	SM00091	PAS domain
YPTB_RS13850	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
YPTB_RS13875	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
YPTB_RS13945	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS14010	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YPTB_RS14010	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YPTB_RS14015	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YPTB_RS14055	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YPTB_RS14100	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS14130	SM00052	Putative diguanylate phosphodiesterase
YPTB_RS14140	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS14155	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS14200	SM00859	Semialdehyde dehydrogenase, NAD binding domain
YPTB_RS14210	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS14240	SM00825	Beta-ketoacyl synthase
YPTB_RS14280	SM00463	Small MutS-related domain
YPTB_RS14285	SM00855	Phosphoglycerate mutase family
YPTB_RS14355	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS14475	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS14475	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS14520	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS14540	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS14560	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YPTB_RS14705	SM00278	Helix-hairpin-helix DNA-binding motif class 1
YPTB_RS14705	SM00292	breast cancer carboxy-terminal domain
YPTB_RS14705	SM00532	Ligase N family
YPTB_RS14710	SM00771	ZipA, C-terminal domain (FtsZ-binding)
YPTB_RS14740	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS14740	SM00387	Histidine kinase-like ATPases
YPTB_RS14740	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS14745	SM00448	cheY-homologous receiver domain
YPTB_RS14745	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS14755	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS14760	SM00450	Rhodanese Homology Domain
YPTB_RS14785	SM00327	von Willebrand factor (vWF) type A domain
YPTB_RS14790	SM00387	Histidine kinase-like ATPases
YPTB_RS14790	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS14795	SM00448	cheY-homologous receiver domain
YPTB_RS14795	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS14810	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS14855	SM00364	Leucine-rich repeats, bacterial type
YPTB_RS14855	SM00369	Leucine-rich repeats, typical (most populated) subfamily
YPTB_RS14865	SM01130	YPTB_RS14865
YPTB_RS14885	SM00869	Autotransporter beta-domain
YPTB_RS14940	SM00919	Malic enzyme, NAD binding domain
YPTB_RS14940	SM01274	YPTB_RS14940
YPTB_RS14960	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YPTB_RS14975	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS14975	SM00448	cheY-homologous receiver domain
YPTB_RS15010	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS15075	SM01130	YPTB_RS15075
YPTB_RS15155	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS15185	SM00924	MgtE intracellular N domain
YPTB_RS15215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS15220	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS15245	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS15245	SM00387	Histidine kinase-like ATPases
YPTB_RS15245	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS15250	SM00448	cheY-homologous receiver domain
YPTB_RS15250	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS15265	SM00046	Diacylglycerol kinase catalytic domain (presumed)
YPTB_RS15335	SM00116	Domain in cystathionine beta-synthase and other proteins.
YPTB_RS15335	SM01240	YPTB_RS15335
YPTB_RS15360	SM00564	beta-propeller repeat
YPTB_RS15380	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS15385	SM00028	Tetratricopeptide repeats
YPTB_RS15395	SM00562	YPTB_RS15395
YPTB_RS15400	SM00247	Beta/gamma crystallins
YPTB_RS15410	SM00869	Autotransporter beta-domain
YPTB_RS15415	SM00869	Autotransporter beta-domain
YPTB_RS15420	SM00869	Autotransporter beta-domain
YPTB_RS15450	SM00271	DnaJ molecular chaperone homology domain
YPTB_RS15530	SM00938	Nitrogen regulatory protein P-II
YPTB_RS15540	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS15540	SM00448	cheY-homologous receiver domain
YPTB_RS15550	SM00387	Histidine kinase-like ATPases
YPTB_RS15550	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS15565	SM01211	YPTB_RS15565
YPTB_RS15570	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS15620	SM00358	Double-stranded RNA binding motif
YPTB_RS15620	SM00535	Ribonuclease III family
YPTB_RS15670	SM00487	DEAD-like helicases superfamily
YPTB_RS15670	SM00490	helicase superfamily c-terminal domain
YPTB_RS15675	SM00248	ankyrin repeats
YPTB_RS15695	SM00986	Uracil DNA glycosylase superfamily
YPTB_RS15695	SM00987	UreE urease accessory protein, C-terminal domain 
YPTB_RS15720	SM00797	Allophanate hydrolase subunit 2
YPTB_RS15725	SM00796	Allophanate hydrolase subunit 1
YPTB_RS15780	SM00387	Histidine kinase-like ATPases
YPTB_RS15780	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS15785	SM00448	cheY-homologous receiver domain
YPTB_RS15785	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS15835	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS15910	SM00988	UreE urease accessory protein, N-terminal domain
YPTB_RS15930	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS15935	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS15955	SM00357	Cold shock protein domain
YPTB_RS16000	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS16030	SM00479	YPTB_RS16030
YPTB_RS16045	SM00849	Metallo-beta-lactamase superfamily
YPTB_RS16050	SM00257	Lysin motif
YPTB_RS16105	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS16105	SM00930	YPTB_RS16105
YPTB_RS16145	SM01322	YPTB_RS16145
YPTB_RS16165	SM00977	TilS substrate C-terminal domain
YPTB_RS16180	SM00481	DNA polymerase alpha chain like domain
YPTB_RS16210	SM00935	Outer membrane protein (OmpH-like)
YPTB_RS16220	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
YPTB_RS16265	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YPTB_RS16315	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
YPTB_RS16315	SM00475	5'-3' exonuclease
YPTB_RS16350	SM00925	MltA specific insert domain
YPTB_RS16370	SM00646	YPTB_RS16370
YPTB_RS16435	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
YPTB_RS16455	SM00927	DNA mismatch repair enzyme MutH
YPTB_RS16480	SM00563	Phosphate acyltransferases
YPTB_RS16490	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS16515	SM00849	Metallo-beta-lactamase superfamily
YPTB_RS16525	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
YPTB_RS16525	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS16525	SM00319	Homologues of the ligand binding domain of Tar
YPTB_RS16535	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS16590	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS16610	SM00947	Carbonic anhydrase
YPTB_RS16630	SM00869	Autotransporter beta-domain
YPTB_RS16645	SM00420	helix_turn_helix, Deoxyribose operon repressor
YPTB_RS16645	SM01134	YPTB_RS16645
YPTB_RS16725	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS16740	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS16780	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS16785	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS16900	SM00778	Zinc-binding domain of primase-helicase
YPTB_RS16900	SM00885	D5 N terminal like
YPTB_RS16905	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS16915	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS16985	SM00479	YPTB_RS16985
YPTB_RS17145	SM00937	YPTB_RS17145
YPTB_RS17175	SM00387	Histidine kinase-like ATPases
YPTB_RS17175	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS17180	SM00448	cheY-homologous receiver domain
YPTB_RS17180	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS17255	SM01011	Aminopeptidase P, N-terminal domain
YPTB_RS17320	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YPTB_RS17325	SM00861	Transketolase, pyrimidine binding domain
YPTB_RS17340	SM01321	YPTB_RS17340
YPTB_RS17355	SM00731	SprT homologues.
YPTB_RS17385	SM00732	Likely ribonuclease with RNase H fold.
YPTB_RS17400	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS17420	SM01152	YPTB_RS17420
YPTB_RS17430	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS17460	SM00478	endonuclease III
YPTB_RS17460	SM00525	YPTB_RS17460
YPTB_RS17495	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS17580	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS17580	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS17645	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS17670	SM01006	Siderophore biosynthesis protein domain
YPTB_RS17700	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS17775	SM00869	Autotransporter beta-domain
YPTB_RS17780	SM00869	Autotransporter beta-domain
YPTB_RS17800	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS17805	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS17865	SM00364	Leucine-rich repeats, bacterial type
YPTB_RS17870	SM00364	Leucine-rich repeats, bacterial type
YPTB_RS17875	SM00869	Autotransporter beta-domain
YPTB_RS17900	SM00052	Putative diguanylate phosphodiesterase
YPTB_RS17900	SM00091	PAS domain
YPTB_RS17900	SM00267	diguanylate cyclase
YPTB_RS17995	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS18065	SM00858	YPTB_RS18065
YPTB_RS18085	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS18110	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS18185	SM00060	Fibronectin type 3 domain
YPTB_RS18185	SM00636	YPTB_RS18185
YPTB_RS18190	SM00060	Fibronectin type 3 domain
YPTB_RS18190	SM00495	Chitin-binding domain type 3
YPTB_RS18295	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS18315	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS18325	SM00563	Phosphate acyltransferases
YPTB_RS18330	SM00434	DNA Topoisomerase IV
YPTB_RS18350	SM00387	Histidine kinase-like ATPases
YPTB_RS18350	SM00433	TopoisomeraseII
YPTB_RS18430	SM01118	YPTB_RS18430
YPTB_RS18435	SM00287	Bacterial SH3 domain homologues
YPTB_RS18440	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YPTB_RS18450	SM00905	Dihydroneopterin aldolase
YPTB_RS18455	SM01207	YPTB_RS18455
YPTB_RS18470	SM00400	zinc finger
YPTB_RS18470	SM00493	YPTB_RS18470
YPTB_RS18470	SM00766	DNA primase DnaG DnaB-binding
YPTB_RS18610	SM01217	YPTB_RS18610
YPTB_RS18635	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS18645	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS18660	SM00869	Autotransporter beta-domain
YPTB_RS18730	SM00912	haemagglutination activity domain
YPTB_RS18740	SM00327	von Willebrand factor (vWF) type A domain
YPTB_RS18750	SM00327	von Willebrand factor (vWF) type A domain
YPTB_RS18755	SM00327	von Willebrand factor (vWF) type A domain
YPTB_RS18765	SM00220	Serine/Threonine protein kinases, catalytic domain
YPTB_RS18790	SM00869	Autotransporter beta-domain
YPTB_RS18815	SM00858	YPTB_RS18815
YPTB_RS18840	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS18840	SM00895	YPTB_RS18840
YPTB_RS18925	SM00749	bacterial OsmY and nodulation domain
YPTB_RS18945	SM00073	Histidine Phosphotransfer domain
YPTB_RS18945	SM00091	PAS domain
YPTB_RS18945	SM00387	Histidine kinase-like ATPases
YPTB_RS18945	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS18945	SM00448	cheY-homologous receiver domain
YPTB_RS18955	SM00729	Elongator protein 3, MiaB family, Radical SAM
YPTB_RS19010	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
YPTB_RS19015	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
YPTB_RS19050	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS19060	SM00116	Domain in cystathionine beta-synthase and other proteins.
YPTB_RS19080	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS19130	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS19140	SM00642	Alpha-amylase domain
YPTB_RS19260	SM00316	Ribosomal protein S1-like RNA-binding domain
YPTB_RS19285	SM00052	Putative diguanylate phosphodiesterase
YPTB_RS19285	SM00267	diguanylate cyclase
YPTB_RS19290	SM00829	Enoylreductase
YPTB_RS19315	SM00878	Biotin carboxylase C-terminal domain
YPTB_RS19350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
YPTB_RS19350	SM00895	YPTB_RS19350
YPTB_RS19370	SM00849	Metallo-beta-lactamase superfamily
YPTB_RS19390	SM00357	Cold shock protein domain
YPTB_RS19395	SM00357	Cold shock protein domain
YPTB_RS19400	SM00357	Cold shock protein domain
YPTB_RS19445	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS19480	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS19495	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS19505	SM01133	YPTB_RS19505
YPTB_RS19520	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS19565	SM00530	Helix-turn-helix XRE-family like proteins 
YPTB_RS19625	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS19625	SM01086	C-terminal, D2-small domain, of ClpB protein
YPTB_RS19695	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS19745	SM00912	haemagglutination activity domain
YPTB_RS19750	SM01018	B12 binding domain
YPTB_RS19755	SM00346	helix_turn_helix isocitrate lyase regulation
YPTB_RS19880	SM00422	helix_turn_helix, mercury resistance
YPTB_RS19890	SM00662	RNA polymerases D
YPTB_RS19895	SM00363	S4 RNA-binding domain
YPTB_RS19895	SM01390	YPTB_RS19895
YPTB_RS19960	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
YPTB_RS19965	SM01374	YPTB_RS19965
YPTB_RS19985	SM00322	K homology RNA-binding domain
YPTB_RS20000	SM01382	YPTB_RS20000
YPTB_RS20000	SM01383	YPTB_RS20000
YPTB_RS20020	SM01403	YPTB_RS20020
YPTB_RS20040	SM00838	Elongation factor G C-terminus
YPTB_RS20040	SM00889	Elongation factor G, domain IV
YPTB_RS20105	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS20130	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS20135	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS20170	SM00100	Cyclic nucleotide-monophosphate binding domain
YPTB_RS20170	SM00419	helix_turn_helix, cAMP Regulatory protein
YPTB_RS20205	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS20330	SM00363	S4 RNA-binding domain
YPTB_RS20345	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS20345	SM00387	Histidine kinase-like ATPases
YPTB_RS20345	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS20350	SM00448	cheY-homologous receiver domain
YPTB_RS20350	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS20360	SM00316	Ribosomal protein S1-like RNA-binding domain
YPTB_RS20360	SM00732	Likely ribonuclease with RNase H fold.
YPTB_RS20370	SM00899	YPTB_RS20370
YPTB_RS20415	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS20420	SM00450	Rhodanese Homology Domain
YPTB_RS20430	SM00420	helix_turn_helix, Deoxyribose operon repressor
YPTB_RS20430	SM01134	YPTB_RS20430
YPTB_RS20475	SM00642	Alpha-amylase domain
YPTB_RS20480	SM00642	Alpha-amylase domain
YPTB_RS20490	SM00257	Lysin motif
YPTB_RS20490	SM00634	Bacterial Ig-like domain (group 1)
YPTB_RS20495	SM00859	Semialdehyde dehydrogenase, NAD binding domain
YPTB_RS20545	SM00354	helix_turn _helix lactose operon repressor
YPTB_RS20560	SM00448	cheY-homologous receiver domain
YPTB_RS20560	SM00862	Transcriptional regulatory protein, C terminal
YPTB_RS20590	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS20595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS20595	SM00387	Histidine kinase-like ATPases
YPTB_RS20595	SM00388	His Kinase A (phosphoacceptor) domain
YPTB_RS20595	SM00448	cheY-homologous receiver domain
YPTB_RS20620	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YPTB_RS20625	SM00235	Zinc-dependent metalloprotease
YPTB_RS20675	SM00869	Autotransporter beta-domain
YPTB_RS20695	SM00052	Putative diguanylate phosphodiesterase
YPTB_RS20735	SM00052	Putative diguanylate phosphodiesterase
YPTB_RS20735	SM00267	diguanylate cyclase
YPTB_RS20745	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS20750	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS20780	SM00912	haemagglutination activity domain
YPTB_RS20795	SM00387	Histidine kinase-like ATPases
YPTB_RS20800	SM00421	helix_turn_helix, Lux Regulon
YPTB_RS20800	SM00448	cheY-homologous receiver domain
YPTB_RS20865	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS20940	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS20955	SM00487	DEAD-like helicases superfamily
YPTB_RS21000	SM00342	helix_turn_helix, arabinose operon control protein
YPTB_RS21010	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS21110	SM00642	Alpha-amylase domain
YPTB_RS21185	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
YPTB_RS21185	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YPTB_RS21185	SM01358	YPTB_RS21185
YPTB_RS21200	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YPTB_RS21280	SM00387	Histidine kinase-like ATPases
YPTB_RS21280	SM00433	TopoisomeraseII
YPTB_RS21295	SM00480	DNA polymerase III beta subunit
YPTB_RS21300	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS21300	SM00760	Bacterial dnaA protein helix-turn-helix domain
YPTB_RS21360	SM00062	Bacterial periplasmic substrate-binding proteins
YPTB_RS21375	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS21410	SM00382	ATPases associated with a variety of cellular activities
YPTB_RS21455	SM01228	YPTB_RS21455
