locus-tag class description YPK_RS00005 PF00308 Bacterial dnaA protein YPK_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix YPK_RS00005 PF11638 DnaA N-terminal domain YPK_RS00010 PF02767 DNA polymerase III beta subunit, central domain YPK_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain YPK_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain YPK_RS00020 PF02463 RecF/RecN/SMC N terminal domain YPK_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus YPK_RS00025 PF18053 DNA gyrase B subunit insert domain YPK_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS00025 PF01751 Toprim domain YPK_RS00025 PF00204 DNA gyrase B YPK_RS00035 PF02423 Ornithine cyclodeaminase/mu-crystallin family YPK_RS00040 PF13291 ACT domain YPK_RS00040 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS00045 PF12566 Protein of unknown function (DUF3748) YPK_RS00045 PF07676 WD40-like Beta Propeller Repeat YPK_RS00050 PF07119 Protein of unknown function (DUF1375) YPK_RS00055 PF00011 Hsp20/alpha crystallin family YPK_RS00060 PF00011 Hsp20/alpha crystallin family YPK_RS00065 PF02080 TrkA-C domain YPK_RS00065 PF06826 Predicted Permease Membrane Region YPK_RS00070 PF00155 Aminotransferase class I and II YPK_RS00080 PF00128 Alpha amylase, catalytic domain YPK_RS00085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_RS00085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_RS00095 PF13488 Glycine zipper YPK_RS00095 PF00691 OmpA family YPK_RS00105 PF03352 Methyladenine glycosylase YPK_RS00110 PF02091 Glycyl-tRNA synthetase alpha subunit YPK_RS00115 PF02092 Glycyl-tRNA synthetase beta subunit YPK_RS00115 PF05746 DALR anticodon binding domain YPK_RS00120 PF11254 Protein of unknown function (DUF3053) YPK_RS00125 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_RS00125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_RS00125 PF02378 Phosphotransferase system, EIIC YPK_RS00130 PF01232 Mannitol dehydrogenase Rossmann domain YPK_RS00130 PF08125 Mannitol dehydrogenase C-terminal domain YPK_RS00135 PF05068 Mannitol repressor YPK_RS00140 PF10928 Protein of unknown function (DUF2810) YPK_RS00155 PF00672 HAMP domain YPK_RS00155 PF02203 Tar ligand binding domain homologue YPK_RS00155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_RS00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPK_RS00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPK_RS00165 PF02634 FdhD/NarQ family YPK_RS00170 PF01568 Molydopterin dinucleotide binding domain YPK_RS00170 PF00384 Molybdopterin oxidoreductase YPK_RS00170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_RS00175 PF00384 Molybdopterin oxidoreductase YPK_RS00175 PF01568 Molydopterin dinucleotide binding domain YPK_RS00175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_RS00180 PF09163 Formate dehydrogenase N, transmembrane YPK_RS00180 PF13247 4Fe-4S dicluster domain YPK_RS00185 PF01292 Prokaryotic cytochrome b561 YPK_RS00190 PF04216 Protein involved in formate dehydrogenase formation YPK_RS00195 PF12390 Selenocysteine synthase N terminal YPK_RS00195 PF03841 L-seryl-tRNA selenium transferase YPK_RS00200 PF09106 Elongation factor SelB, winged helix YPK_RS00200 PF00009 Elongation factor Tu GTP binding domain YPK_RS00200 PF09107 Elongation factor SelB, winged helix YPK_RS00200 PF03144 Elongation factor Tu domain 2 YPK_RS00205 PF13700 Domain of unknown function (DUF4158) YPK_RS00205 PF01526 Tn3 transposase DDE domain YPK_RS00230 PF07690 Major Facilitator Superfamily YPK_RS00235 PF01757 Acyltransferase family YPK_RS00240 PF00419 Fimbrial protein YPK_RS00245 PF00577 Outer membrane usher protein YPK_RS00245 PF13954 PapC N-terminal domain YPK_RS00245 PF13953 PapC C-terminal domain YPK_RS00250 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS00250 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS00260 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_RS00260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS00270 PF13407 Periplasmic binding protein domain YPK_RS00275 PF00005 ABC transporter YPK_RS00280 PF02653 Branched-chain amino acid transport system / permease component YPK_RS00285 PF12833 Helix-turn-helix domain YPK_RS00290 PF13356 Arm DNA-binding domain YPK_RS00290 PF14659 Phage integrase, N-terminal SAM-like domain YPK_RS00290 PF00589 Phage integrase family YPK_RS00315 PF01527 Transposase YPK_RS00320 PF13683 Integrase core domain YPK_RS00320 PF13276 HTH-like domain YPK_RS00325 PF00005 ABC transporter YPK_RS00330 PF01032 FecCD transport family YPK_RS00335 PF01032 FecCD transport family YPK_RS00340 PF01497 Periplasmic binding protein YPK_RS00355 PF00156 Phosphoribosyl transferase domain YPK_RS00360 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS00365 PF01175 Urocanase Rossmann-like domain YPK_RS00365 PF17392 Urocanase C-terminal domain YPK_RS00365 PF17391 Urocanase N-terminal domain YPK_RS00370 PF00221 Aromatic amino acid lyase YPK_RS00375 PF00324 Amino acid permease YPK_RS00380 PF12146 Serine aminopeptidase, S33 YPK_RS00385 PF00884 Sulfatase YPK_RS00385 PF08019 Phosphoethanolamine transferase EptA/EptB YPK_RS00390 PF00072 Response regulator receiver domain YPK_RS00390 PF00196 Bacterial regulatory proteins, luxR family YPK_RS00395 PF07730 Histidine kinase YPK_RS00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS00395 PF05231 MASE1 YPK_RS00400 PF07690 Major Facilitator Superfamily YPK_RS00410 PF05594 Haemagluttinin repeat YPK_RS00410 PF05860 haemagglutination activity domain YPK_RS00410 PF13332 Hemagglutinin repeat YPK_RS00410 PF04829 Pre-toxin domain with VENN motif YPK_RS00415 PF17287 POTRA domain YPK_RS00415 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_RS00415 PF08479 POTRA domain, ShlB-type YPK_RS00425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_RS00430 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS00435 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS00435 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_RS00440 PF00005 ABC transporter YPK_RS00440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_RS00445 PF00005 ABC transporter YPK_RS00445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_RS00450 PF01270 Glycosyl hydrolases family 8 YPK_RS00455 PF00672 HAMP domain YPK_RS00455 PF00990 Diguanylate cyclase, GGDEF domain YPK_RS00455 PF00563 EAL domain YPK_RS00455 PF17154 Gammaproteobacterial periplasmic sensor domain YPK_RS00460 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPK_RS00465 PF06917 Periplasmic pectate lyase YPK_RS00475 PF00375 Sodium:dicarboxylate symporter family YPK_RS00480 PF00675 Insulinase (Peptidase family M16) YPK_RS00480 PF05193 Peptidase M16 inactive domain YPK_RS00485 PF00294 pfkB family carbohydrate kinase YPK_RS00490 PF01361 Tautomerase enzyme YPK_RS00495 PF00563 EAL domain YPK_RS00500 PF05170 AsmA family YPK_RS00505 PF02611 CDP-diacylglycerol pyrophosphatase YPK_RS00510 PF03631 Virulence factor BrkB YPK_RS00535 PF02595 Glycerate kinase family YPK_RS00540 PF02447 GntP family permease YPK_RS00545 PF05651 Putative sugar diacid recognition YPK_RS00545 PF17853 GGDEF-like domain YPK_RS00545 PF13556 PucR C-terminal helix-turn-helix domain YPK_RS00550 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS00550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_RS00555 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YPK_RS00560 PF01432 Peptidase family M3 YPK_RS00565 PF04445 Putative SAM-dependent methyltransferase YPK_RS00570 PF08548 Peptidase M10 serralysin C terminal YPK_RS00570 PF00413 Matrixin YPK_RS00570 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) YPK_RS00575 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YPK_RS00575 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YPK_RS00580 PF00582 Universal stress protein family YPK_RS00585 PF10625 Universal stress protein B (UspB) YPK_RS00590 PF01384 Phosphate transporter family YPK_RS00600 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS00600 PF13188 PAS domain YPK_RS00600 PF00072 Response regulator receiver domain YPK_RS00600 PF08448 PAS fold YPK_RS00605 PF00005 ABC transporter YPK_RS00610 PF02653 Branched-chain amino acid transport system / permease component YPK_RS00615 PF13407 Periplasmic binding protein domain YPK_RS00625 PF01116 Fructose-bisphosphate aldolase class-II YPK_RS00635 PF00486 Transcriptional regulatory protein, C terminal YPK_RS00635 PF00072 Response regulator receiver domain YPK_RS00645 PF02678 Pirin YPK_RS00645 PF17954 Quercetinase C-terminal cupin domain YPK_RS00650 PF00356 Bacterial regulatory proteins, lacI family YPK_RS00650 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_RS00655 PF02447 GntP family permease YPK_RS00660 PF01202 Shikimate kinase YPK_RS00680 PF01914 MarC family integral membrane protein YPK_RS00685 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPK_RS00685 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPK_RS00705 PF07979 Intimin C-type lectin domain YPK_RS00705 PF11924 Inverse autotransporter, beta-domain YPK_RS00705 PF02369 Bacterial Ig-like domain (group 1) YPK_RS00705 PF09134 Invasin, domain 3 YPK_RS00710 PF06580 Histidine kinase YPK_RS00710 PF07694 5TMR of 5TMR-LYT YPK_RS00715 PF00128 Alpha amylase, catalytic domain YPK_RS00715 PF02806 Alpha amylase, C-terminal all-beta domain YPK_RS00715 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPK_RS00720 PF00128 Alpha amylase, catalytic domain YPK_RS00720 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YPK_RS00720 PF18390 Glycogen debranching enzyme C-terminal domain YPK_RS00725 PF00483 Nucleotidyl transferase YPK_RS00730 PF08323 Starch synthase catalytic domain YPK_RS00730 PF00534 Glycosyl transferases group 1 YPK_RS00735 PF00343 Carbohydrate phosphorylase YPK_RS00740 PF01266 FAD dependent oxidoreductase YPK_RS00740 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YPK_RS00760 PF00455 DeoR C terminal sensor domain YPK_RS00760 PF08220 DeoR-like helix-turn-helix domain YPK_RS00765 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease YPK_RS00765 PF01694 Rhomboid family YPK_RS00770 PF00581 Rhodanese-like domain YPK_RS00775 PF00196 Bacterial regulatory proteins, luxR family YPK_RS00775 PF17874 MalT-like TPR region YPK_RS00780 PF00343 Carbohydrate phosphorylase YPK_RS00785 PF02446 4-alpha-glucanotransferase YPK_RS00790 PF01106 NifU-like domain YPK_RS00790 PF01521 Iron-sulphur cluster biosynthesis YPK_RS00795 PF00156 Phosphoribosyl transferase domain YPK_RS00800 PF00561 alpha/beta hydrolase fold YPK_RS00805 PF07338 Protein of unknown function (DUF1471) YPK_RS00810 PF09012 FeoC like transcriptional regulator YPK_RS00815 PF07670 Nucleoside recognition YPK_RS00815 PF02421 Ferrous iron transport protein B YPK_RS00815 PF07664 Ferrous iron transport protein B C terminus YPK_RS00815 PF17910 FeoB cytosolic helical domain YPK_RS00820 PF04023 FeoA domain YPK_RS00830 PF00575 S1 RNA binding domain YPK_RS00830 PF17674 HHH domain YPK_RS00830 PF16921 Tex protein YqgF-like domain YPK_RS00830 PF09371 Tex-like protein N-terminal domain YPK_RS00835 PF03449 Transcription elongation factor, N-terminal YPK_RS00835 PF01272 Transcription elongation factor, GreA/GreB, C-term YPK_RS00840 PF00486 Transcriptional regulatory protein, C terminal YPK_RS00840 PF00072 Response regulator receiver domain YPK_RS00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS00845 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS00845 PF00672 HAMP domain YPK_RS00850 PF01293 Phosphoenolpyruvate carboxykinase YPK_RS00855 PF01430 Hsp33 protein YPK_RS00860 PF01479 S4 domain YPK_RS00865 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS00870 PF07095 Intracellular growth attenuator protein IgaA YPK_RS00880 PF00293 NUDIX domain YPK_RS00890 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPK_RS00975 PF00182 Chitinase class I YPK_RS00990 PF06252 Protein of unknown function (DUF1018) YPK_RS01065 PF13693 Winged helix-turn-helix DNA-binding YPK_RS01075 PF17092 Penicillin-binding protein OB-like domain YPK_RS01075 PF00905 Penicillin binding protein transpeptidase domain YPK_RS01075 PF00912 Transglycosylase YPK_RS01105 PF03958 Bacterial type II/III secretion system short domain YPK_RS01105 PF00263 Bacterial type II and III secretion system protein YPK_RS01110 PF01202 Shikimate kinase YPK_RS01115 PF01761 3-dehydroquinate synthase YPK_RS01120 PF05036 Sporulation related domain YPK_RS01125 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPK_RS01130 PF00834 Ribulose-phosphate 3 epimerase family YPK_RS01135 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS01140 PF00579 tRNA synthetases class I (W and Y) YPK_RS01145 PF10414 Sirohaem synthase dimerisation region YPK_RS01145 PF14824 Sirohaem biosynthesis protein central YPK_RS01145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPK_RS01150 PF01226 Formate/nitrite transporter YPK_RS01155 PF13806 Rieske-like [2Fe-2S] domain YPK_RS01160 PF18267 Rubredoxin NAD+ reductase C-terminal domain YPK_RS01160 PF04324 BFD-like [2Fe-2S] binding domain YPK_RS01160 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPK_RS01160 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPK_RS01160 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS01165 PF07969 Amidohydrolase family YPK_RS01170 PF07690 Major Facilitator Superfamily YPK_RS01180 PF00356 Bacterial regulatory proteins, lacI family YPK_RS01185 PF11975 Family 4 glycosyl hydrolase C-terminal domain YPK_RS01185 PF02056 Family 4 glycosyl hydrolase YPK_RS01190 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPK_RS01195 PF05872 Bacterial protein of unknown function (DUF853) YPK_RS01200 PF00117 Glutamine amidotransferase class-I YPK_RS01205 PF00202 Aminotransferase class-III YPK_RS01210 PF12805 FUSC-like inner membrane protein yccS YPK_RS01215 PF13545 Crp-like helix-turn-helix domain YPK_RS01215 PF00027 Cyclic nucleotide-binding domain YPK_RS01220 PF02566 OsmC-like protein YPK_RS01225 PF05638 Type VI secretion system effector, Hcp YPK_RS01240 PF00485 Phosphoribulokinase / Uridine kinase family YPK_RS01245 PF06794 Uncharacterised protein family (UPF0270) YPK_RS01250 PF00561 alpha/beta hydrolase fold YPK_RS01255 PF01810 LysE type translocator YPK_RS01260 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPK_RS01265 PF00005 ABC transporter YPK_RS01270 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS01275 PF02668 Taurine catabolism dioxygenase TauD, TfdA family YPK_RS01285 PF00535 Glycosyl transferase family 2 YPK_RS01290 PF00005 ABC transporter YPK_RS01290 PF12848 ABC transporter YPK_RS01295 PF02525 Flavodoxin-like fold YPK_RS01300 PF02254 TrkA-N domain YPK_RS01300 PF00999 Sodium/hydrogen exchanger family YPK_RS01305 PF09526 Probable metal-binding protein (DUF2387) YPK_RS01310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_RS01315 PF04102 SlyX YPK_RS01320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_RS01320 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPK_RS01325 PF08348 YheO-like PAS domain YPK_RS01325 PF13309 HTH domain YPK_RS01330 PF02635 DsrE/DsrF-like family YPK_RS01335 PF02635 DsrE/DsrF-like family YPK_RS01340 PF04077 DsrH like protein YPK_RS01345 PF00164 Ribosomal protein S12/S23 YPK_RS01350 PF00177 Ribosomal protein S7p/S5e YPK_RS01355 PF14492 Elongation Factor G, domain II YPK_RS01355 PF00009 Elongation factor Tu GTP binding domain YPK_RS01355 PF00679 Elongation factor G C-terminus YPK_RS01355 PF03764 Elongation factor G, domain IV YPK_RS01355 PF03144 Elongation factor Tu domain 2 YPK_RS01360 PF00009 Elongation factor Tu GTP binding domain YPK_RS01360 PF03144 Elongation factor Tu domain 2 YPK_RS01360 PF03143 Elongation factor Tu C-terminal domain YPK_RS01365 PF01797 Transposase IS200 like YPK_RS01370 PF04324 BFD-like [2Fe-2S] binding domain YPK_RS01375 PF00210 Ferritin-like domain YPK_RS01380 PF00338 Ribosomal protein S10p/S20e YPK_RS01385 PF00297 Ribosomal protein L3 YPK_RS01390 PF00573 Ribosomal protein L4/L1 family YPK_RS01395 PF00276 Ribosomal protein L23 YPK_RS01400 PF03947 Ribosomal Proteins L2, C-terminal domain YPK_RS01400 PF00181 Ribosomal Proteins L2, RNA binding domain YPK_RS01405 PF00203 Ribosomal protein S19 YPK_RS01410 PF00237 Ribosomal protein L22p/L17e YPK_RS01415 PF07650 KH domain YPK_RS01415 PF00189 Ribosomal protein S3, C-terminal domain YPK_RS01420 PF00252 Ribosomal protein L16p/L10e YPK_RS01425 PF00831 Ribosomal L29 protein YPK_RS01430 PF00366 Ribosomal protein S17 YPK_RS01435 PF00238 Ribosomal protein L14p/L23e YPK_RS01440 PF00467 KOW motif YPK_RS01440 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YPK_RS01445 PF00281 Ribosomal protein L5 YPK_RS01445 PF00673 ribosomal L5P family C-terminus YPK_RS01450 PF00253 Ribosomal protein S14p/S29e YPK_RS01455 PF00410 Ribosomal protein S8 YPK_RS01460 PF00347 Ribosomal protein L6 YPK_RS01465 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YPK_RS01470 PF00333 Ribosomal protein S5, N-terminal domain YPK_RS01470 PF03719 Ribosomal protein S5, C-terminal domain YPK_RS01475 PF00327 Ribosomal protein L30p/L7e YPK_RS01480 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YPK_RS01485 PF00344 SecY translocase YPK_RS01490 PF00444 Ribosomal protein L36 YPK_RS01495 PF00416 Ribosomal protein S13/S18 YPK_RS01500 PF00411 Ribosomal protein S11 YPK_RS01505 PF00163 Ribosomal protein S4/S9 N-terminal domain YPK_RS01505 PF01479 S4 domain YPK_RS01510 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YPK_RS01510 PF01000 RNA polymerase Rpb3/RpoA insert domain YPK_RS01510 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YPK_RS01515 PF01196 Ribosomal protein L17 YPK_RS01520 PF13411 MerR HTH family regulatory protein YPK_RS01525 PF03889 Alternative ribosome-rescue factor A YPK_RS01530 PF01741 Large-conductance mechanosensitive channel, MscL YPK_RS01535 PF02080 TrkA-C domain YPK_RS01535 PF02254 TrkA-N domain YPK_RS01540 PF01189 16S rRNA methyltransferase RsmB/F YPK_RS01540 PF01029 NusB family YPK_RS01545 PF00551 Formyl transferase YPK_RS01545 PF02911 Formyl transferase, C-terminal domain YPK_RS01550 PF01327 Polypeptide deformylase YPK_RS01555 PF02481 DNA recombination-mediator protein A YPK_RS01555 PF17782 DprA winged helix domain YPK_RS01560 PF04361 Protein of unknown function (DUF494) YPK_RS01565 PF01396 Topoisomerase DNA binding C4 zinc finger YPK_RS01570 PF01300 Telomere recombination YPK_RS01575 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YPK_RS01575 PF08501 Shikimate dehydrogenase substrate binding domain YPK_RS01575 PF01488 Shikimate / quinate 5-dehydrogenase YPK_RS01580 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_RS01615 PF01565 FAD binding domain YPK_RS01615 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YPK_RS01620 PF02237 Biotin protein ligase C terminal domain YPK_RS01620 PF03099 Biotin/lipoate A/B protein ligase family YPK_RS01620 PF08279 HTH domain YPK_RS01625 PF00485 Phosphoribulokinase / Uridine kinase family YPK_RS01630 PF13673 Acetyltransferase (GNAT) domain YPK_RS01655 PF00009 Elongation factor Tu GTP binding domain YPK_RS01655 PF03143 Elongation factor Tu C-terminal domain YPK_RS01655 PF03144 Elongation factor Tu domain 2 YPK_RS01660 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YPK_RS01665 PF00467 KOW motif YPK_RS01665 PF02357 Transcription termination factor nusG YPK_RS01670 PF00298 Ribosomal protein L11, RNA binding domain YPK_RS01670 PF03946 Ribosomal protein L11, N-terminal domain YPK_RS01675 PF00687 Ribosomal protein L1p/L10e family YPK_RS01680 PF00466 Ribosomal protein L10 YPK_RS01685 PF16320 Ribosomal protein L7/L12 dimerisation domain YPK_RS01685 PF00542 Ribosomal protein L7/L12 C-terminal domain YPK_RS01690 PF04565 RNA polymerase Rpb2, domain 3 YPK_RS01690 PF04561 RNA polymerase Rpb2, domain 2 YPK_RS01690 PF00562 RNA polymerase Rpb2, domain 6 YPK_RS01690 PF04563 RNA polymerase beta subunit YPK_RS01690 PF04560 RNA polymerase Rpb2, domain 7 YPK_RS01690 PF10385 RNA polymerase beta subunit external 1 domain YPK_RS01695 PF04997 RNA polymerase Rpb1, domain 1 YPK_RS01695 PF05000 RNA polymerase Rpb1, domain 4 YPK_RS01695 PF04998 RNA polymerase Rpb1, domain 5 YPK_RS01695 PF00623 RNA polymerase Rpb1, domain 2 YPK_RS01695 PF04983 RNA polymerase Rpb1, domain 3 YPK_RS01705 PF04055 Radical SAM superfamily YPK_RS01705 PF06968 Biotin and Thiamin Synthesis associated domain YPK_RS01710 PF05690 Thiazole biosynthesis protein ThiG YPK_RS01720 PF00899 ThiF family YPK_RS01725 PF02581 Thiamine monophosphate synthase YPK_RS01730 PF01964 Radical SAM ThiC family YPK_RS01730 PF13667 ThiC-associated domain YPK_RS01740 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ YPK_RS01745 PF09297 NADH pyrophosphatase zinc ribbon domain YPK_RS01745 PF00293 NUDIX domain YPK_RS01755 PF01208 Uroporphyrinogen decarboxylase (URO-D) YPK_RS01760 PF04493 Endonuclease V YPK_RS01765 PF04222 Protein of unknown function (DUF416) YPK_RS01770 PF00216 Bacterial DNA-binding protein YPK_RS01775 PF07356 Protein of unknown function (DUF1481) YPK_RS01780 PF02844 Phosphoribosylglycinamide synthetase, N domain YPK_RS01780 PF02843 Phosphoribosylglycinamide synthetase, C domain YPK_RS01780 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YPK_RS01785 PF01808 AICARFT/IMPCHase bienzyme YPK_RS01785 PF02142 MGS-like domain YPK_RS01830 PF04204 Homoserine O-succinyltransferase YPK_RS01835 PF01274 Malate synthase YPK_RS01840 PF00463 Isocitrate lyase family YPK_RS01845 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YPK_RS01850 PF09339 IclR helix-turn-helix domain YPK_RS01850 PF01614 Bacterial transcriptional regulator YPK_RS01855 PF02310 B12 binding domain YPK_RS01855 PF02607 B12 binding domain YPK_RS01855 PF02574 Homocysteine S-methyltransferase YPK_RS01855 PF02965 Vitamin B12 dependent methionine synthase, activation domain YPK_RS01855 PF00809 Pterin binding enzyme YPK_RS01870 PF17287 POTRA domain YPK_RS01870 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_RS01870 PF08479 POTRA domain, ShlB-type YPK_RS01875 PF00696 Amino acid kinase family YPK_RS01875 PF01842 ACT domain YPK_RS01880 PF00342 Phosphoglucose isomerase YPK_RS01885 PF06146 Phosphate-starvation-inducible E YPK_RS01890 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS01895 PF14785 Maltose transport system permease protein MalF P2 domain YPK_RS01895 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS01900 PF01547 Bacterial extracellular solute-binding protein YPK_RS01910 PF17912 MalK OB fold domain YPK_RS01910 PF00005 ABC transporter YPK_RS01915 PF02264 LamB porin YPK_RS01920 PF07148 Maltose operon periplasmic protein precursor (MalM) YPK_RS01930 PF05638 Type VI secretion system effector, Hcp YPK_RS01940 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_RS01950 PF05947 Type VI secretion system, TssF YPK_RS01970 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPK_RS01980 PF17871 AAA lid domain YPK_RS01980 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_RS01980 PF07724 AAA domain (Cdc48 subfamily) YPK_RS01980 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS02010 PF04717 Type VI secretion system, phage-baseplate injector YPK_RS02025 PF05593 RHS Repeat YPK_RS02025 PF03527 RHS protein YPK_RS02055 PF03527 RHS protein YPK_RS02055 PF05593 RHS Repeat YPK_RS02065 PF04717 Type VI secretion system, phage-baseplate injector YPK_RS02075 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_RS02075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_RS02080 PF02311 AraC-like ligand binding domain YPK_RS02080 PF12833 Helix-turn-helix domain YPK_RS02085 PF05025 RbsD / FucU transport protein family YPK_RS02090 PF00294 pfkB family carbohydrate kinase YPK_RS02095 PF01791 DeoC/LacD family aldolase YPK_RS02105 PF09084 NMT1/THI5 like YPK_RS02110 PF00296 Luciferase-like monooxygenase YPK_RS02115 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS02120 PF00005 ABC transporter YPK_RS02125 PF04221 RelB antitoxin YPK_RS02130 PF00860 Permease family YPK_RS02135 PF00872 Transposase, Mutator family YPK_RS02140 PF00999 Sodium/hydrogen exchanger family YPK_RS02150 PF03279 Bacterial lipid A biosynthesis acyltransferase YPK_RS02160 PF00005 ABC transporter YPK_RS02165 PF02653 Branched-chain amino acid transport system / permease component YPK_RS02175 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS02175 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_RS02180 PF00571 CBS domain YPK_RS02180 PF01380 SIS domain YPK_RS02185 PF02798 Glutathione S-transferase, N-terminal domain YPK_RS02200 PF00313 'Cold-shock' DNA-binding domain YPK_RS02205 PF00313 'Cold-shock' DNA-binding domain YPK_RS02210 PF00313 'Cold-shock' DNA-binding domain YPK_RS02225 PF05433 Glycine zipper 2TM domain YPK_RS02230 PF00753 Metallo-beta-lactamase superfamily YPK_RS02235 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPK_RS02235 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YPK_RS02240 PF02627 Carboxymuconolactone decarboxylase family YPK_RS02245 PF07690 Major Facilitator Superfamily YPK_RS02265 PF02954 Bacterial regulatory protein, Fis family YPK_RS02270 PF01207 Dihydrouridine synthase (Dus) YPK_RS02280 PF00474 Sodium:solute symporter family YPK_RS02285 PF06196 Protein of unknown function (DUF997) YPK_RS02290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPK_RS02290 PF00289 Biotin carboxylase, N-terminal domain YPK_RS02290 PF02785 Biotin carboxylase C-terminal domain YPK_RS02295 PF00364 Biotin-requiring enzyme YPK_RS02300 PF01220 Dehydroquinase class II YPK_RS02305 PF01794 Ferric reductase like transmembrane component YPK_RS02310 PF00174 Oxidoreductase molybdopterin binding domain YPK_RS02315 PF08240 Alcohol dehydrogenase GroES-like domain YPK_RS02315 PF00107 Zinc-binding dehydrogenase YPK_RS02320 PF00990 Diguanylate cyclase, GGDEF domain YPK_RS02320 PF17157 Gammaproteobacterial periplasmic sensor domain YPK_RS02320 PF00563 EAL domain YPK_RS02330 PF04085 rod shape-determining protein MreC YPK_RS02335 PF04093 rod shape-determining protein MreD YPK_RS02340 PF02545 Maf-like protein YPK_RS02345 PF00575 S1 RNA binding domain YPK_RS02345 PF10150 Ribonuclease E/G family YPK_RS02350 PF13116 Protein of unknown function YPK_RS02350 PF13502 AsmA-like C-terminal region YPK_RS02355 PF00795 Carbon-nitrogen hydrolase YPK_RS02360 PF01523 Putative modulator of DNA gyrase YPK_RS02365 PF18807 Tripartite Tc toxins repeat YPK_RS02365 PF14431 YwqJ-like deaminase YPK_RS02385 PF12255 Insecticide toxin TcdB middle/C-terminal region YPK_RS02385 PF12256 Insecticide toxin TcdB middle/N-terminal region YPK_RS02385 PF03534 Salmonella virulence plasmid 65kDa B protein YPK_RS02390 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain YPK_RS02390 PF18413 Neuraminidase-like domain YPK_RS02400 PF03466 LysR substrate binding domain YPK_RS02400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS02405 PF03466 LysR substrate binding domain YPK_RS02410 PF07869 Protein of unknown function (DUF1656) YPK_RS02415 PF13533 Biotin-lipoyl like YPK_RS02420 PF04632 Fusaric acid resistance protein family YPK_RS02425 PF00171 Aldehyde dehydrogenase family YPK_RS02435 PF01337 Barstar (barnase inhibitor) YPK_RS02440 PF04751 Protein of unknown function (DUF615) YPK_RS02445 PF01523 Putative modulator of DNA gyrase YPK_RS02455 PF07361 Cytochrome b562 YPK_RS02460 PF01272 Transcription elongation factor, GreA/GreB, C-term YPK_RS02460 PF14760 Rnk N-terminus YPK_RS02465 PF11941 Domain of unknown function (DUF3459) YPK_RS02465 PF00128 Alpha amylase, catalytic domain YPK_RS02470 PF02378 Phosphotransferase system, EIIC YPK_RS02470 PF00367 phosphotransferase system, EIIB YPK_RS02475 PF00356 Bacterial regulatory proteins, lacI family YPK_RS02485 PF01042 Endoribonuclease L-PSP YPK_RS02490 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain YPK_RS02490 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain YPK_RS02495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPK_RS02495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPK_RS02500 PF00381 PTS HPr component phosphorylation site YPK_RS02505 PF03668 P-loop ATPase protein family YPK_RS02510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_RS02515 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPK_RS02520 PF00309 Sigma-54 factor, Activator interacting domain (AID) YPK_RS02520 PF04963 Sigma-54 factor, core binding domain YPK_RS02520 PF04552 Sigma-54, DNA binding domain YPK_RS02525 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPK_RS02525 PF00005 ABC transporter YPK_RS02530 PF03968 OstA-like protein YPK_RS02535 PF06835 Lipopolysaccharide-assembly, LptC-related YPK_RS02545 PF01380 SIS domain YPK_RS02545 PF00571 CBS domain YPK_RS02550 PF01699 Sodium/calcium exchanger protein YPK_RS02555 PF00005 ABC transporter YPK_RS02560 PF02405 Permease MlaE YPK_RS02565 PF02470 MlaD protein YPK_RS02570 PF05494 MlaC protein YPK_RS02575 PF13466 STAS domain YPK_RS02580 PF01722 BolA-like protein YPK_RS02585 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPK_RS02590 PF13180 PDZ domain YPK_RS02595 PF00595 PDZ domain YPK_RS02595 PF13180 PDZ domain YPK_RS02600 PF06295 Protein of unknown function (DUF1043) YPK_RS02605 PF03969 AFG1-like ATPase YPK_RS02610 PF00572 Ribosomal protein L13 YPK_RS02615 PF00380 Ribosomal protein S9/S16 YPK_RS02625 PF00043 Glutathione S-transferase, C-terminal domain YPK_RS02625 PF02798 Glutathione S-transferase, N-terminal domain YPK_RS02630 PF04386 Stringent starvation protein B YPK_RS02640 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS02640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPK_RS02645 PF01493 GXGXG motif YPK_RS02645 PF04898 Glutamate synthase central domain YPK_RS02645 PF00310 Glutamine amidotransferases class-II YPK_RS02645 PF01645 Conserved region in glutamate synthase YPK_RS02650 PF04055 Radical SAM superfamily YPK_RS02650 PF16199 Radical_SAM C-terminal domain YPK_RS02660 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS02660 PF01627 Hpt domain YPK_RS02660 PF00989 PAS fold YPK_RS02660 PF00072 Response regulator receiver domain YPK_RS02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS02660 PF18415 Histidine kinase receptor ArcB trans-membrane domain YPK_RS02675 PF00912 Transglycosylase YPK_RS02680 PF04972 BON domain YPK_RS02685 PF13580 SIS domain YPK_RS02690 PF02021 Uncharacterised protein family UPF0102 YPK_RS02695 PF04348 LppC putative lipoprotein YPK_RS02700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPK_RS02705 PF17954 Quercetinase C-terminal cupin domain YPK_RS02705 PF02678 Pirin YPK_RS02710 PF03466 LysR substrate binding domain YPK_RS02710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS02715 PF13409 Glutathione S-transferase, N-terminal domain YPK_RS02720 PF07681 DoxX YPK_RS02730 PF07332 Putative Actinobacterial Holin-X, holin superfamily III YPK_RS02735 PF05957 Bacterial protein of unknown function (DUF883) YPK_RS02750 PF13721 SecD export protein N-terminal TM region YPK_RS02755 PF09335 SNARE associated Golgi protein YPK_RS02765 PF00392 Bacterial regulatory proteins, gntR family YPK_RS02765 PF07729 FCD domain YPK_RS02770 PF07690 Major Facilitator Superfamily YPK_RS02780 PF02614 Glucuronate isomerase YPK_RS02785 PF01232 Mannitol dehydrogenase Rossmann domain YPK_RS02785 PF08125 Mannitol dehydrogenase C-terminal domain YPK_RS02790 PF08666 SAF domain YPK_RS02790 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus YPK_RS02795 PF10688 Bacterial inner membrane protein YPK_RS02800 PF00375 Sodium:dicarboxylate symporter family YPK_RS02805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_RS02810 PF01863 Protein of unknown function DUF45 YPK_RS02815 PF03797 Autotransporter beta-domain YPK_RS02820 PF05175 Methyltransferase small domain YPK_RS02825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPK_RS02825 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS02830 PF03729 Short repeat of unknown function (DUF308) YPK_RS02850 PF00092 von Willebrand factor type A domain YPK_RS02860 PF02342 TerD domain YPK_RS02865 PF00092 von Willebrand factor type A domain YPK_RS02870 PF08479 POTRA domain, ShlB-type YPK_RS02870 PF17287 POTRA domain YPK_RS02870 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_RS02875 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS02875 PF13332 Hemagglutinin repeat YPK_RS02875 PF04829 Pre-toxin domain with VENN motif YPK_RS02875 PF05860 haemagglutination activity domain YPK_RS02880 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain YPK_RS02880 PF13332 Hemagglutinin repeat YPK_RS02880 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS02880 PF05860 haemagglutination activity domain YPK_RS02880 PF05594 Haemagluttinin repeat YPK_RS02890 PF13332 Hemagglutinin repeat YPK_RS02890 PF04829 Pre-toxin domain with VENN motif YPK_RS02895 PF07262 CDI immunity protein YPK_RS02900 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS02900 PF13332 Hemagglutinin repeat YPK_RS02900 PF05860 haemagglutination activity domain YPK_RS02900 PF04829 Pre-toxin domain with VENN motif YPK_RS02910 PF13332 Hemagglutinin repeat YPK_RS02910 PF04829 Pre-toxin domain with VENN motif YPK_RS02915 PF04829 Pre-toxin domain with VENN motif YPK_RS02915 PF13332 Hemagglutinin repeat YPK_RS02925 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS02925 PF04829 Pre-toxin domain with VENN motif YPK_RS02925 PF13332 Hemagglutinin repeat YPK_RS02925 PF05860 haemagglutination activity domain YPK_RS02930 PF04829 Pre-toxin domain with VENN motif YPK_RS02930 PF05860 haemagglutination activity domain YPK_RS02930 PF13332 Hemagglutinin repeat YPK_RS02930 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS02950 PF03459 TOBE domain YPK_RS02950 PF00005 ABC transporter YPK_RS02950 PF17912 MalK OB fold domain YPK_RS02955 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain YPK_RS02960 PF00356 Bacterial regulatory proteins, lacI family YPK_RS02965 PF01547 Bacterial extracellular solute-binding protein YPK_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS02985 PF14310 Fibronectin type III-like domain YPK_RS02985 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPK_RS02985 PF00933 Glycosyl hydrolase family 3 N terminal domain YPK_RS02995 PF04632 Fusaric acid resistance protein family YPK_RS03000 PF00529 HlyD membrane-fusion protein of T1SS YPK_RS03000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS03020 PF00155 Aminotransferase class I and II YPK_RS03040 PF01042 Endoribonuclease L-PSP YPK_RS03060 PF03466 LysR substrate binding domain YPK_RS03060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS03065 PF02661 Fic/DOC family YPK_RS03080 PF05638 Type VI secretion system effector, Hcp YPK_RS03120 PF08346 AntA/AntB antirepressor YPK_RS03120 PF10548 P22AR C-terminal domain YPK_RS03205 PF03979 Sigma-70 factor, region 1.1 YPK_RS03205 PF00140 Sigma-70 factor, region 1.2 YPK_RS03205 PF04542 Sigma-70 region 2 YPK_RS03205 PF04545 Sigma-70, region 4 YPK_RS03205 PF04539 Sigma-70 region 3 YPK_RS03205 PF04546 Sigma-70, non-essential region YPK_RS03210 PF10410 DnaB-helicase binding domain of primase YPK_RS03210 PF08278 DNA primase DnaG DnaB-binding YPK_RS03210 PF08275 DNA primase catalytic core, N-terminal domain YPK_RS03210 PF01807 CHC2 zinc finger YPK_RS03215 PF01165 Ribosomal protein S21 YPK_RS03220 PF00814 Glycoprotease family YPK_RS03225 PF02660 Glycerol-3-phosphate acyltransferase YPK_RS03230 PF02152 Dihydroneopterin aldolase YPK_RS03235 PF02673 Bacitracin resistance protein BacA YPK_RS03240 PF12627 Probable RNA and SrmB- binding site of polymerase A YPK_RS03240 PF01743 Poly A polymerase head domain YPK_RS03240 PF01966 HD domain YPK_RS03245 PF08239 Bacterial SH3 domain YPK_RS03250 PF01928 CYTH domain YPK_RS03255 PF08335 GlnD PII-uridylyltransferase YPK_RS03255 PF03710 Glutamate-ammonia ligase adenylyltransferase YPK_RS03260 PF01467 Cytidylyltransferase-like YPK_RS03260 PF00294 pfkB family carbohydrate kinase YPK_RS03265 PF13520 Amino acid permease YPK_RS03270 PF04380 Membrane fusogenic activity YPK_RS03280 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YPK_RS03285 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPK_RS03290 PF03738 Glutathionylspermidine synthase preATP-grasp YPK_RS03295 PF06693 Protein of unknown function (DUF1190) YPK_RS03305 PF02321 Outer membrane efflux protein YPK_RS03310 PF00293 NUDIX domain YPK_RS03315 PF06853 Protein of unknown function (DUF1249) YPK_RS03320 PF00149 Calcineurin-like phosphoesterase YPK_RS03325 PF05728 Uncharacterised protein family (UPF0227) YPK_RS03330 PF00204 DNA gyrase B YPK_RS03330 PF01751 Toprim domain YPK_RS03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS03330 PF00986 DNA gyrase B subunit, carboxyl terminus YPK_RS03335 PF03466 LysR substrate binding domain YPK_RS03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS03340 PF02525 Flavodoxin-like fold YPK_RS03345 PF00521 DNA gyrase/topoisomerase IV, subunit A YPK_RS03345 PF03989 DNA gyrase C-terminal domain, beta-propeller YPK_RS03350 PF01553 Acyltransferase YPK_RS03355 PF07731 Multicopper oxidase YPK_RS03355 PF07732 Multicopper oxidase YPK_RS03360 PF11842 Domain of unknown function (DUF3362) YPK_RS03360 PF08497 Radical SAM N-terminal YPK_RS03360 PF04055 Radical SAM superfamily YPK_RS03365 PF00248 Aldo/keto reductase family YPK_RS03375 PF00465 Iron-containing alcohol dehydrogenase YPK_RS03380 PF06719 AraC-type transcriptional regulator N-terminus YPK_RS03380 PF12833 Helix-turn-helix domain YPK_RS03385 PF09335 SNARE associated Golgi protein YPK_RS03390 PF01053 Cys/Met metabolism PLP-dependent enzyme YPK_RS03395 PF01618 MotA/TolQ/ExbB proton channel family YPK_RS03400 PF02472 Biopolymer transport protein ExbD/TolR YPK_RS03435 PF00437 Type II/IV secretion system protein YPK_RS03450 PF04972 BON domain YPK_RS03450 PF00263 Bacterial type II and III secretion system protein YPK_RS03450 PF13629 Pilus formation protein N terminal region YPK_RS03485 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading YPK_RS03485 PF18416 N-acetylglucosamine binding protein domain 2 YPK_RS03490 PF00704 Glycosyl hydrolases family 18 YPK_RS03495 PF00419 Fimbrial protein YPK_RS03500 PF00577 Outer membrane usher protein YPK_RS03500 PF13954 PapC N-terminal domain YPK_RS03500 PF13953 PapC C-terminal domain YPK_RS03505 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS03505 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS03510 PF09222 Fimbrial adhesin F17-AG, lectin domain YPK_RS03510 PF00419 Fimbrial protein YPK_RS03515 PF01497 Periplasmic binding protein YPK_RS03530 PF00771 FHIPEP family YPK_RS03535 PF01312 FlhB HrpN YscU SpaS Family YPK_RS03540 PF01311 Bacterial export proteins, family 1 YPK_RS03545 PF01313 Bacterial export proteins, family 3 YPK_RS03550 PF00813 FliP family YPK_RS03555 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPK_RS03565 PF00158 Sigma-54 interaction domain YPK_RS03565 PF00072 Response regulator receiver domain YPK_RS03565 PF02954 Bacterial regulatory protein, Fis family YPK_RS03570 PF02049 Flagellar hook-basal body complex protein FliE YPK_RS03575 PF01514 Secretory protein of YscJ/FliF family YPK_RS03575 PF08345 Flagellar M-ring protein C-terminal YPK_RS03590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_RS03590 PF18269 T3SS EscN ATPase C-terminal domain YPK_RS03610 PF13144 Chaperone for flagella basal body P-ring formation YPK_RS03615 PF00460 Flagella basal body rod protein YPK_RS03620 PF00460 Flagella basal body rod protein YPK_RS03620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_RS03625 PF03963 Flagellar hook capping protein - N-terminal region YPK_RS03625 PF13860 FlgD Ig-like domain YPK_RS03625 PF13861 FlgD Tudor-like domain YPK_RS03630 PF07559 Flagellar basal body protein FlaE YPK_RS03630 PF00460 Flagella basal body rod protein YPK_RS03630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_RS03645 PF18500 CadC C-terminal domain 1 YPK_RS03645 PF00486 Transcriptional regulatory protein, C terminal YPK_RS03650 PF00669 Bacterial flagellin N-terminal helical region YPK_RS03650 PF00700 Bacterial flagellin C-terminal helical region YPK_RS03655 PF00669 Bacterial flagellin N-terminal helical region YPK_RS03655 PF00700 Bacterial flagellin C-terminal helical region YPK_RS03665 PF01618 MotA/TolQ/ExbB proton channel family YPK_RS03670 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPK_RS03670 PF00691 OmpA family YPK_RS03695 PF05433 Glycine zipper 2TM domain YPK_RS03705 PF08448 PAS fold YPK_RS03705 PF08447 PAS fold YPK_RS03705 PF00990 Diguanylate cyclase, GGDEF domain YPK_RS03705 PF00563 EAL domain YPK_RS03710 PF00529 HlyD membrane-fusion protein of T1SS YPK_RS03710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS03720 PF07906 ShET2 enterotoxin, N-terminal region YPK_RS03730 PF03797 Autotransporter beta-domain YPK_RS03735 PF12468 Type III secretion system leucine rich repeat protein YPK_RS03735 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_RS03740 PF12468 Type III secretion system leucine rich repeat protein YPK_RS03740 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_RS03740 PF12468 Type III secretion system leucine rich repeat protein YPK_RS03740 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_RS03745 PF12468 Type III secretion system leucine rich repeat protein YPK_RS03745 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_RS03750 PF03806 AbgT putative transporter family YPK_RS03755 PF01546 Peptidase family M20/M25/M40 YPK_RS03755 PF07687 Peptidase dimerisation domain YPK_RS03760 PF00593 TonB dependent receptor YPK_RS03760 PF07715 TonB-dependent Receptor Plug Domain YPK_RS03770 PF00550 Phosphopantetheine attachment site YPK_RS03770 PF08242 Methyltransferase domain YPK_RS03770 PF00668 Condensation domain YPK_RS03770 PF00501 AMP-binding enzyme YPK_RS03775 PF00501 AMP-binding enzyme YPK_RS03775 PF13193 AMP-binding enzyme C-terminal domain YPK_RS03775 PF00668 Condensation domain YPK_RS03780 PF00501 AMP-binding enzyme YPK_RS03780 PF00550 Phosphopantetheine attachment site YPK_RS03780 PF08242 Methyltransferase domain YPK_RS03780 PF00668 Condensation domain YPK_RS03795 PF00975 Thioesterase domain YPK_RS03805 PF00005 ABC transporter YPK_RS03805 PF08021 Siderophore-interacting FAD-binding domain YPK_RS03805 PF00664 ABC transporter transmembrane region YPK_RS03805 PF04954 Siderophore-interacting protein YPK_RS03810 PF00664 ABC transporter transmembrane region YPK_RS03810 PF00005 ABC transporter YPK_RS03825 PF02447 GntP family permease YPK_RS03830 PF12951 Passenger-associated-transport-repeat YPK_RS03835 PF04717 Type VI secretion system, phage-baseplate injector YPK_RS03845 PF05593 RHS Repeat YPK_RS03845 PF03527 RHS protein YPK_RS03855 PF14220 Domain of unknown function (DUF4329) YPK_RS03855 PF03527 RHS protein YPK_RS03855 PF05593 RHS Repeat YPK_RS03865 PF05593 RHS Repeat YPK_RS03865 PF03527 RHS protein YPK_RS03875 PF03527 RHS protein YPK_RS03875 PF05593 RHS Repeat YPK_RS03905 PF00939 Sodium:sulfate symporter transmembrane region YPK_RS03910 PF00356 Bacterial regulatory proteins, lacI family YPK_RS03925 PF00593 TonB dependent receptor YPK_RS03925 PF07715 TonB-dependent Receptor Plug Domain YPK_RS03930 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPK_RS03935 PF06276 Ferric iron reductase FhuF-like transporter YPK_RS03935 PF04183 IucA / IucC family YPK_RS03945 PF04183 IucA / IucC family YPK_RS03945 PF06276 Ferric iron reductase FhuF-like transporter YPK_RS03965 PF03472 Autoinducer binding domain YPK_RS03965 PF00196 Bacterial regulatory proteins, luxR family YPK_RS03970 PF00765 Autoinducer synthase YPK_RS03975 PF02517 CPBP intramembrane metalloprotease YPK_RS03985 PF12759 InsA C-terminal domain YPK_RS03985 PF03811 InsA N-terminal domain YPK_RS04005 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_RS04020 PF05736 OprF membrane domain YPK_RS04020 PF00691 OmpA family YPK_RS04030 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS04030 PF17871 AAA lid domain YPK_RS04030 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_RS04030 PF07724 AAA domain (Cdc48 subfamily) YPK_RS04035 PF13296 Putative type VI secretion system Rhs element Vgr YPK_RS04035 PF04717 Type VI secretion system, phage-baseplate injector YPK_RS04035 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) YPK_RS04050 PF12759 InsA C-terminal domain YPK_RS04050 PF03811 InsA N-terminal domain YPK_RS04065 PF02899 Phage integrase, N-terminal SAM-like domain YPK_RS04065 PF00589 Phage integrase family YPK_RS04075 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPK_RS04075 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPK_RS04075 PF01276 Orn/Lys/Arg decarboxylase, major domain YPK_RS04080 PF13407 Periplasmic binding protein domain YPK_RS04085 PF00005 ABC transporter YPK_RS04090 PF02653 Branched-chain amino acid transport system / permease component YPK_RS04095 PF07715 TonB-dependent Receptor Plug Domain YPK_RS04105 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YPK_RS04105 PF01464 Transglycosylase SLT domain YPK_RS04110 PF04362 Bacterial Fe(2+) trafficking YPK_RS04115 PF14815 NUDIX domain YPK_RS04115 PF10576 Iron-sulfur binding domain of endonuclease III YPK_RS04115 PF00730 HhH-GPD superfamily base excision DNA repair protein YPK_RS04115 PF00633 Helix-hairpin-helix motif YPK_RS04120 PF02390 Putative methyltransferase YPK_RS04125 PF04320 Protein with unknown function (DUF469) YPK_RS04130 PF04960 Glutaminase YPK_RS04135 PF11101 Protein of unknown function (DUF2884) YPK_RS04140 PF16671 Actin cross-linking domain YPK_RS04140 PF11713 Peptidase C80 family YPK_RS04140 PF11647 Membrane Localization Domain YPK_RS04140 PF07634 RtxA repeat YPK_RS04140 PF12146 Serine aminopeptidase, S33 YPK_RS04145 PF04055 Radical SAM superfamily YPK_RS04145 PF06969 HemN C-terminal domain YPK_RS04150 PF01725 Ham1 family YPK_RS04155 PF02594 Uncharacterised ACR, YggU family COG1872 YPK_RS04160 PF02325 YGGT family YPK_RS04165 PF03807 NADP oxidoreductase coenzyme F420-dependent YPK_RS04165 PF14748 Pyrroline-5-carboxylate reductase dimerisation YPK_RS04170 PF01168 Alanine racemase, N-terminal domain YPK_RS04175 PF00437 Type II/IV secretion system protein YPK_RS04180 PF04371 Porphyromonas-type peptidyl-arginine deiminase YPK_RS04185 PF00795 Carbon-nitrogen hydrolase YPK_RS04190 PF03652 Holliday junction resolvase YPK_RS04195 PF02622 Uncharacterized ACR, COG1678 YPK_RS04200 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YPK_RS04200 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YPK_RS04205 PF04452 RNA methyltransferase YPK_RS04215 PF04231 Endonuclease I YPK_RS04220 PF10263 SprT-like family YPK_RS04220 PF17283 SprT-like zinc ribbon domain YPK_RS04225 PF02772 S-adenosylmethionine synthetase, central domain YPK_RS04225 PF00438 S-adenosylmethionine synthetase, N-terminal domain YPK_RS04225 PF02773 S-adenosylmethionine synthetase, C-terminal domain YPK_RS04230 PF17810 Arginine decarboxylase helical bundle domain YPK_RS04230 PF17944 Arginine decarboxylase C-terminal helical extension YPK_RS04230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPK_RS04235 PF01797 Transposase IS200 like YPK_RS04245 PF01797 Transposase IS200 like YPK_RS04250 PF01435 Peptidase family M48 YPK_RS04255 PF02779 Transketolase, pyrimidine binding domain YPK_RS04255 PF02780 Transketolase, C-terminal domain YPK_RS04255 PF00456 Transketolase, thiamine diphosphate binding domain YPK_RS04260 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPK_RS04260 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPK_RS04265 PF00162 Phosphoglycerate kinase YPK_RS04270 PF01116 Fructose-bisphosphate aldolase class-II YPK_RS04280 PF05552 Conserved TM helix YPK_RS04280 PF00924 Mechanosensitive ion channel YPK_RS04285 PF01810 LysE type translocator YPK_RS04290 PF04402 Protein of unknown function (DUF541) YPK_RS04295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS04295 PF03466 LysR substrate binding domain YPK_RS04300 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPK_RS04305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_RS04305 PF01842 ACT domain YPK_RS04305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_RS04310 PF01812 5-formyltetrahydrofolate cyclo-ligase family YPK_RS04315 PF05164 Cell division protein ZapA YPK_RS04320 PF03695 Uncharacterised protein family (UPF0149) YPK_RS04325 PF05195 Aminopeptidase P, N-terminal domain YPK_RS04325 PF00557 Metallopeptidase family M24 YPK_RS04330 PF01494 FAD binding domain YPK_RS04335 PF01494 FAD binding domain YPK_RS04340 PF08669 Glycine cleavage T-protein C-terminal barrel domain YPK_RS04340 PF01571 Aminomethyltransferase folate-binding domain YPK_RS04345 PF01597 Glycine cleavage H-protein YPK_RS04350 PF02347 Glycine cleavage system P-protein YPK_RS04365 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS04365 PF03895 YadA-like membrane anchor domain YPK_RS04365 PF05662 Coiled stalk of trimeric autotransporter adhesin YPK_RS04365 PF05658 Head domain of trimeric autotransporter adhesin YPK_RS04375 PF03006 Haemolysin-III related YPK_RS04385 PF01571 Aminomethyltransferase folate-binding domain YPK_RS04390 PF03937 Flavinator of succinate dehydrogenase YPK_RS04395 PF07254 Membrane-bound toxin component of toxin-antitoxin system YPK_RS04400 PF00486 Transcriptional regulatory protein, C terminal YPK_RS04400 PF00072 Response regulator receiver domain YPK_RS04405 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS04405 PF00672 HAMP domain YPK_RS04410 PF06123 Inner membrane protein CreD YPK_RS04415 PF00258 Flavodoxin YPK_RS04425 PF16452 Bacteriophage CI repressor C-terminal domain YPK_RS04425 PF07022 Bacteriophage CI repressor helix-turn-helix domain YPK_RS04430 PF06892 Phage regulatory protein CII (CP76) YPK_RS04445 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPK_RS04465 PF05840 Bacteriophage replication gene A protein (GPA) YPK_RS04580 PF03406 Phage tail fibre repeat YPK_RS04610 PF00589 Phage integrase family YPK_RS04610 PF02899 Phage integrase, N-terminal SAM-like domain YPK_RS04615 PF13098 Thioredoxin-like domain YPK_RS04615 PF10411 Disulfide bond isomerase protein N-terminus YPK_RS04620 PF17768 RecJ OB domain YPK_RS04620 PF02272 DHHA1 domain YPK_RS04620 PF01368 DHH family YPK_RS04625 PF03462 PCRF domain YPK_RS04625 PF00472 RF-1 domain YPK_RS04630 PF01336 OB-fold nucleic acid binding domain YPK_RS04630 PF00152 tRNA synthetases class II (D, K and N) YPK_RS04640 PF00589 Phage integrase family YPK_RS04640 PF13356 Arm DNA-binding domain YPK_RS04640 PF14659 Phage integrase, N-terminal SAM-like domain YPK_RS04830 PF03551 Transcriptional regulator PadR-like family YPK_RS04835 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family YPK_RS04845 PF13407 Periplasmic binding protein domain YPK_RS04850 PF02653 Branched-chain amino acid transport system / permease component YPK_RS04855 PF00005 ABC transporter YPK_RS04860 PF17912 MalK OB fold domain YPK_RS04860 PF00005 ABC transporter YPK_RS04865 PF13416 Bacterial extracellular solute-binding protein YPK_RS04870 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS04875 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS04880 PF07745 Glycosyl hydrolase family 53 YPK_RS04885 PF08532 Beta-galactosidase trimerisation domain YPK_RS04885 PF02449 Beta-galactosidase YPK_RS04885 PF08533 Beta-galactosidase C-terminal domain YPK_RS04890 PF02378 Phosphotransferase system, EIIC YPK_RS04890 PF00367 phosphotransferase system, EIIB YPK_RS04895 PF02264 LamB porin YPK_RS04900 PF00356 Bacterial regulatory proteins, lacI family YPK_RS04905 PF13802 Galactose mutarotase-like YPK_RS04905 PF16338 Domain of unknown function (DUF4968) YPK_RS04905 PF01055 Glycosyl hydrolases family 31 YPK_RS04905 PF17137 Domain of unknown function (DUF5110) YPK_RS04910 PF07690 Major Facilitator Superfamily YPK_RS04915 PF00356 Bacterial regulatory proteins, lacI family YPK_RS04930 PF01116 Fructose-bisphosphate aldolase class-II YPK_RS04940 PF00884 Sulfatase YPK_RS04945 PF04055 Radical SAM superfamily YPK_RS04945 PF13186 Iron-sulfur cluster-binding domain YPK_RS04950 PF07470 Glycosyl Hydrolase Family 88 YPK_RS04960 PF01979 Amidohydrolase family YPK_RS04965 PF03610 PTS system fructose IIA component YPK_RS04970 PF03613 PTS system mannose/fructose/sorbose family IID component YPK_RS04975 PF03609 PTS system sorbose-specific iic component YPK_RS04980 PF03830 PTS system sorbose subfamily IIB component YPK_RS04985 PF01380 SIS domain YPK_RS04990 PF08013 Tagatose 6 phosphate kinase YPK_RS04995 PF08220 DeoR-like helix-turn-helix domain YPK_RS04995 PF00455 DeoR C terminal sensor domain YPK_RS05000 PF00884 Sulfatase YPK_RS05005 PF09092 Lyase, N terminal YPK_RS05005 PF09093 Lyase, catalytic YPK_RS05005 PF02278 Polysaccharide lyase family 8, super-sandwich domain YPK_RS05005 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YPK_RS05030 PF00484 Carbonic anhydrase YPK_RS05045 PF00263 Bacterial type II and III secretion system protein YPK_RS05045 PF03958 Bacterial type II/III secretion system short domain YPK_RS05050 PF00437 Type II/IV secretion system protein YPK_RS05055 PF00482 Type II secretion system (T2SS), protein F YPK_RS05060 PF08334 Type II secretion system (T2SS), protein G YPK_RS05060 PF07963 Prokaryotic N-terminal methylation motif YPK_RS05075 PF11612 Type II secretion system (T2SS), protein J YPK_RS05075 PF07963 Prokaryotic N-terminal methylation motif YPK_RS05095 PF01478 Type IV leader peptidase family YPK_RS05095 PF06750 Bacterial Peptidase A24 N-terminal domain YPK_RS05115 PF00672 HAMP domain YPK_RS05115 PF02203 Tar ligand binding domain homologue YPK_RS05115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_RS05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS05130 PF03466 LysR substrate binding domain YPK_RS05135 PF07690 Major Facilitator Superfamily YPK_RS05140 PF03466 LysR substrate binding domain YPK_RS05140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS05145 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YPK_RS05145 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YPK_RS05150 PF00356 Bacterial regulatory proteins, lacI family YPK_RS05155 PF01568 Molydopterin dinucleotide binding domain YPK_RS05155 PF00384 Molybdopterin oxidoreductase YPK_RS05160 PF01553 Acyltransferase YPK_RS05160 PF00501 AMP-binding enzyme YPK_RS05160 PF13193 AMP-binding enzyme C-terminal domain YPK_RS05165 PF07690 Major Facilitator Superfamily YPK_RS05180 PF00248 Aldo/keto reductase family YPK_RS05185 PF02976 DNA mismatch repair enzyme MutH YPK_RS05200 PF00293 NUDIX domain YPK_RS05205 PF05524 PEP-utilising enzyme, N-terminal YPK_RS05205 PF02896 PEP-utilising enzyme, TIM barrel domain YPK_RS05205 PF00391 PEP-utilising enzyme, mobile domain YPK_RS05205 PF01590 GAF domain YPK_RS05210 PF01790 Prolipoprotein diacylglyceryl transferase YPK_RS05215 PF00303 Thymidylate synthase YPK_RS05245 PF17946 RecC C-terminal domain YPK_RS05250 PF05193 Peptidase M16 inactive domain YPK_RS05250 PF00675 Insulinase (Peptidase family M16) YPK_RS05250 PF16187 Middle or third domain of peptidase_M16 YPK_RS05255 PF00580 UvrD/REP helicase N-terminal domain YPK_RS05255 PF13361 UvrD-like helicase C-terminal domain YPK_RS05255 PF12705 PD-(D/E)XK nuclease superfamily YPK_RS05260 PF13538 UvrD-like helicase C-terminal domain YPK_RS05265 PF00696 Amino acid kinase family YPK_RS05265 PF00583 Acetyltransferase (GNAT) family YPK_RS05270 PF11741 AMIN domain YPK_RS05270 PF01520 N-acetylmuramoyl-L-alanine amidase YPK_RS05290 PF03562 MltA specific insert domain YPK_RS05290 PF06725 3D domain YPK_RS05295 PF00899 ThiF family YPK_RS05300 PF02657 Fe-S metabolism associated domain YPK_RS05305 PF00266 Aminotransferase class-V YPK_RS05310 PF03466 LysR substrate binding domain YPK_RS05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS05315 PF04241 Protein of unknown function (DUF423) YPK_RS05320 PF01728 FtsJ-like methyltransferase YPK_RS05320 PF18125 RlmM ferredoxin-like domain YPK_RS05325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPK_RS05325 PF01367 5'-3' exonuclease, C-terminal SAM fold YPK_RS05330 PF03641 Possible lysine decarboxylase YPK_RS05330 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases YPK_RS05330 PF11892 Domain of unknown function (DUF3412) YPK_RS05335 PF14489 QueF-like protein YPK_RS05335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YPK_RS05340 PF07348 Syd protein (SUKH-2) YPK_RS05345 PF04287 tRNA pseudouridine synthase C YPK_RS05350 PF00849 RNA pseudouridylate synthase YPK_RS05355 PF00258 Flavodoxin YPK_RS05360 PF11944 Protein of unknown function (DUF3461) YPK_RS05365 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_RS05365 PF14602 Hexapeptide repeat of succinyl-transferase YPK_RS05365 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YPK_RS05370 PF01842 ACT domain YPK_RS05370 PF01909 Nucleotidyltransferase domain YPK_RS05370 PF01966 HD domain YPK_RS05370 PF08335 GlnD PII-uridylyltransferase YPK_RS05375 PF00557 Metallopeptidase family M24 YPK_RS05380 PF00318 Ribosomal protein S2 YPK_RS05385 PF00889 Elongation factor TS YPK_RS05390 PF00696 Amino acid kinase family YPK_RS05395 PF01765 Ribosome recycling factor YPK_RS05400 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YPK_RS05400 PF13288 DXP reductoisomerase C-terminal domain YPK_RS05400 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YPK_RS05405 PF01255 Putative undecaprenyl diphosphate synthase YPK_RS05415 PF02163 Peptidase family M50 YPK_RS05415 PF17820 PDZ domain YPK_RS05420 PF01103 Surface antigen YPK_RS05420 PF07244 Surface antigen variable number repeat YPK_RS05425 PF03938 Outer membrane protein (OmpH-like) YPK_RS05430 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YPK_RS05430 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_RS05435 PF07977 FabA-like domain YPK_RS05440 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YPK_RS05440 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_RS05445 PF02684 Lipid-A-disaccharide synthetase YPK_RS05450 PF01351 Ribonuclease HII YPK_RS05455 PF07733 Bacterial DNA polymerase III alpha NTPase domain YPK_RS05455 PF01336 OB-fold nucleic acid binding domain YPK_RS05455 PF02811 PHP domain YPK_RS05455 PF14579 Helix-hairpin-helix motif YPK_RS05455 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YPK_RS05460 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YPK_RS05465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPK_RS05470 PF11734 TilS substrate C-terminal domain YPK_RS05470 PF09179 TilS substrate binding domain YPK_RS05470 PF01171 PP-loop family YPK_RS05475 PF00034 Cytochrome c YPK_RS05480 PF07073 Modulator of Rho-dependent transcription termination (ROF) YPK_RS05485 PF06786 Uncharacterised protein family (UPF0253) YPK_RS05490 PF07152 YaeQ protein YPK_RS05495 PF00472 RF-1 domain YPK_RS05500 PF17185 NlpE C-terminal OB domain YPK_RS05500 PF04170 NlpE N-terminal domain YPK_RS05505 PF03129 Anticodon binding domain YPK_RS05505 PF04073 Aminoacyl-tRNA editing domain YPK_RS05505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPK_RS05510 PF18389 TrmO C-terminal domain YPK_RS05510 PF01980 tRNA-methyltransferase O YPK_RS05515 PF16358 RcsF lipoprotein YPK_RS05520 PF03180 NLPA lipoprotein YPK_RS05525 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS05530 PF09383 NIL domain YPK_RS05530 PF00005 ABC transporter YPK_RS05570 PF00248 Aldo/keto reductase family YPK_RS05580 PF03372 Endonuclease/Exonuclease/phosphatase family YPK_RS05585 PF01464 Transglycosylase SLT domain YPK_RS05585 PF01476 LysM domain YPK_RS05590 PF00753 Metallo-beta-lactamase superfamily YPK_RS05590 PF16123 Hydroxyacylglutathione hydrolase C-terminus YPK_RS05595 PF08241 Methyltransferase domain YPK_RS05600 PF00075 RNase H YPK_RS05605 PF00929 Exonuclease YPK_RS05615 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin YPK_RS05625 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPK_RS05630 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS05635 PF00571 CBS domain YPK_RS05635 PF00005 ABC transporter YPK_RS05640 PF00268 Ribonucleotide reductase, small chain YPK_RS05645 PF02867 Ribonucleotide reductase, barrel domain YPK_RS05645 PF00317 Ribonucleotide reductase, all-alpha domain YPK_RS05645 PF08343 Ribonucleotide reductase N-terminal YPK_RS05650 PF07972 NrdI Flavodoxin like YPK_RS05660 PF06392 Acid shock protein repeat YPK_RS05665 PF09400 Protein of unknown function (DUF2002) YPK_RS05670 PF06711 Protein of unknown function (DUF1198) YPK_RS05680 PF00313 'Cold-shock' DNA-binding domain YPK_RS05685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_RS05690 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS05695 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_RS05695 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS05700 PF00005 ABC transporter YPK_RS05705 PF00005 ABC transporter YPK_RS05710 PF00547 Urease, gamma subunit YPK_RS05715 PF00699 Urease beta subunit YPK_RS05720 PF01979 Amidohydrolase family YPK_RS05720 PF00449 Urease alpha-subunit, N-terminal domain YPK_RS05725 PF05194 UreE urease accessory protein, C-terminal domain YPK_RS05725 PF02814 UreE urease accessory protein, N-terminal domain YPK_RS05730 PF01730 UreF YPK_RS05735 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPK_RS05740 PF01774 UreD urease accessory protein YPK_RS05745 PF03253 Urea transporter YPK_RS05750 PF03824 High-affinity nickel-transport protein YPK_RS05755 PF06411 HdeA/HdeB family YPK_RS05765 PF07885 Ion channel YPK_RS05765 PF02254 TrkA-N domain YPK_RS05770 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPK_RS05775 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPK_RS05785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_RS05790 PF02378 Phosphotransferase system, EIIC YPK_RS05795 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YPK_RS05800 PF07883 Cupin domain YPK_RS05800 PF12833 Helix-turn-helix domain YPK_RS05805 PF04794 YdjC-like protein YPK_RS05825 PF03925 SeqA protein C-terminal domain YPK_RS05825 PF17206 SeqA protein N-terminal domain YPK_RS05830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPK_RS05830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPK_RS05830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPK_RS05830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPK_RS05850 PF00072 Response regulator receiver domain YPK_RS05850 PF00486 Transcriptional regulatory protein, C terminal YPK_RS05855 PF13492 GAF domain YPK_RS05855 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS05855 PF02702 Osmosensitive K+ channel His kinase sensor domain YPK_RS05855 PF13493 Domain of unknown function (DUF4118) YPK_RS05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS05860 PF02669 K+-transporting ATPase, c chain YPK_RS05870 PF03814 Potassium-transporting ATPase A subunit YPK_RS05885 PF10725 Protein of unknown function (DUF2517) YPK_RS05890 PF08349 Protein of unknown function (DUF1722) YPK_RS05895 PF03441 FAD binding domain of DNA photolyase YPK_RS05895 PF00875 DNA photolyase YPK_RS05900 PF02112 cAMP phosphodiesterases class-II YPK_RS05905 PF01784 NIF3 (NGG1p interacting factor 3) YPK_RS05910 PF02682 Carboxyltransferase domain, subdomain C and D YPK_RS05915 PF02626 Carboxyltransferase domain, subdomain A and B YPK_RS05920 PF03746 LamB/YcsF family YPK_RS05935 PF01470 Pyroglutamyl peptidase YPK_RS05940 PF03167 Uracil DNA glycosylase superfamily YPK_RS05945 PF01228 Glycine radical YPK_RS05960 PF12796 Ankyrin repeats (3 copies) YPK_RS05965 PF00270 DEAD/DEAH box helicase YPK_RS05965 PF00271 Helicase conserved C-terminal domain YPK_RS05970 PF05175 Methyltransferase small domain YPK_RS05975 PF00890 FAD binding domain YPK_RS05975 PF02910 Fumarate reductase flavoprotein C-term YPK_RS05980 PF04542 Sigma-70 region 2 YPK_RS05980 PF08281 Sigma-70, region 4 YPK_RS05985 PF03872 Anti sigma-E protein RseA, N-terminal domain YPK_RS05985 PF03873 Anti sigma-E protein RseA, C-terminal domain YPK_RS05990 PF03888 MucB/RseB N-terminal domain YPK_RS05990 PF17188 MucB/RseB C-terminal domain YPK_RS06005 PF06421 GTP-binding protein LepA C-terminus YPK_RS06005 PF00009 Elongation factor Tu GTP binding domain YPK_RS06005 PF00679 Elongation factor G C-terminus YPK_RS06005 PF03144 Elongation factor Tu domain 2 YPK_RS06010 PF10502 Signal peptidase, peptidase S26 YPK_RS06015 PF00035 Double-stranded RNA binding motif YPK_RS06015 PF14622 Ribonuclease-III-like YPK_RS06020 PF07650 KH domain YPK_RS06020 PF01926 50S ribosome-binding GTPase YPK_RS06025 PF11967 Recombination protein O N terminal YPK_RS06025 PF02565 Recombination protein O C terminal YPK_RS06030 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YPK_RS06035 PF01648 4'-phosphopantetheinyl transferase superfamily YPK_RS06040 PF12838 4Fe-4S dicluster domain YPK_RS06135 PF06530 Phage antitermination protein Q YPK_RS06315 PF01380 SIS domain YPK_RS06315 PF01418 Helix-turn-helix domain, rpiR family YPK_RS06320 PF01380 SIS domain YPK_RS06330 PF14437 MafB19-like deaminase YPK_RS06335 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS06335 PF01464 Transglycosylase SLT domain YPK_RS06340 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YPK_RS06340 PF02769 AIR synthase related protein, C-terminal domain YPK_RS06340 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YPK_RS06355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS06355 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS06360 PF13942 YfhG lipoprotein YPK_RS06365 PF00158 Sigma-54 interaction domain YPK_RS06365 PF00072 Response regulator receiver domain YPK_RS06370 PF00795 Carbon-nitrogen hydrolase YPK_RS06370 PF02540 NAD synthase YPK_RS06375 PF00543 Nitrogen regulatory protein P-II YPK_RS06380 PF14502 Helix-turn-helix domain YPK_RS06380 PF14503 YhfZ C-terminal domain YPK_RS06385 PF00175 Oxidoreductase NAD-binding domain YPK_RS06385 PF00970 Oxidoreductase FAD-binding domain YPK_RS06385 PF00042 Globin YPK_RS06390 PF00464 Serine hydroxymethyltransferase YPK_RS06400 PF13505 Outer membrane protein beta-barrel domain YPK_RS06410 PF12832 MFS_1 like family YPK_RS06415 PF00874 PRD domain YPK_RS06420 PF06226 Protein of unknown function (DUF1007) YPK_RS06425 PF03824 High-affinity nickel-transport protein YPK_RS06430 PF00459 Inositol monophosphatase family YPK_RS06435 PF00588 SpoU rRNA Methylase family YPK_RS06440 PF02082 Transcriptional regulator YPK_RS06445 PF00266 Aminotransferase class-V YPK_RS06450 PF01592 NifU-like N terminal domain YPK_RS06455 PF01521 Iron-sulphur cluster biosynthesis YPK_RS06460 PF00226 DnaJ domain YPK_RS06460 PF07743 HSCB C-terminal oligomerisation domain YPK_RS06465 PF00012 Hsp70 protein YPK_RS06470 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_RS06475 PF04384 Iron-sulphur cluster assembly YPK_RS06480 PF12404 Peptidase YPK_RS06480 PF00883 Cytosol aminopeptidase family, catalytic domain YPK_RS06485 PF14581 SseB protein C-terminal domain YPK_RS06485 PF07179 SseB protein N-terminal domain YPK_RS06490 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPK_RS06490 PF03797 Autotransporter beta-domain YPK_RS06490 PF03212 Pertactin YPK_RS06510 PF00334 Nucleoside diphosphate kinase YPK_RS06515 PF04055 Radical SAM superfamily YPK_RS06525 PF13464 Domain of unknown function (DUF4115) YPK_RS06530 PF04551 GcpE protein YPK_RS06535 PF03129 Anticodon binding domain YPK_RS06535 PF13393 Histidyl-tRNA synthetase YPK_RS06540 PF09976 Tetratricopeptide repeat-like domain YPK_RS06545 PF13360 PQQ-like domain YPK_RS06550 PF01926 50S ribosome-binding GTPase YPK_RS06550 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YPK_RS06560 PF07191 zinc-ribbons YPK_RS06565 PF02601 Exonuclease VII, large subunit YPK_RS06565 PF13742 OB-fold nucleic acid binding domain YPK_RS06570 PF00571 CBS domain YPK_RS06570 PF00478 IMP dehydrogenase / GMP reductase domain YPK_RS06580 PF02540 NAD synthase YPK_RS06580 PF00958 GMP synthase C terminal domain YPK_RS06580 PF00117 Glutamine amidotransferase class-I YPK_RS06585 PF05638 Type VI secretion system effector, Hcp YPK_RS06625 PF13610 DDE domain YPK_RS06630 PF13610 DDE domain YPK_RS06635 PF07979 Intimin C-type lectin domain YPK_RS06635 PF09134 Invasin, domain 3 YPK_RS06635 PF11924 Inverse autotransporter, beta-domain YPK_RS06635 PF02369 Bacterial Ig-like domain (group 1) YPK_RS06655 PF08543 Phosphomethylpyrimidine kinase YPK_RS06670 PF00781 Diacylglycerol kinase catalytic domain YPK_RS06675 PF16325 Peptidase family U32 C-terminal domain YPK_RS06675 PF01136 Peptidase family U32 YPK_RS06680 PF07411 Domain of unknown function (DUF1508) YPK_RS06685 PF00072 Response regulator receiver domain YPK_RS06685 PF00486 Transcriptional regulatory protein, C terminal YPK_RS06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS06690 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS06690 PF00672 HAMP domain YPK_RS06695 PF07690 Major Facilitator Superfamily YPK_RS06700 PF00873 AcrB/AcrD/AcrF family YPK_RS06705 PF00873 AcrB/AcrD/AcrF family YPK_RS06710 PF13533 Biotin-lipoyl like YPK_RS06715 PF00005 ABC transporter YPK_RS06715 PF08402 TOBE domain YPK_RS06720 PF00392 Bacterial regulatory proteins, gntR family YPK_RS06720 PF00155 Aminotransferase class I and II YPK_RS06725 PF00202 Aminotransferase class-III YPK_RS06735 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS06740 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS06745 PF00012 Hsp70 protein YPK_RS06750 PF00571 CBS domain YPK_RS06750 PF01769 Divalent cation transporter YPK_RS06750 PF03448 MgtE intracellular N domain YPK_RS06760 PF02541 Ppx/GppA phosphatase family YPK_RS06765 PF02503 Polyphosphate kinase middle domain YPK_RS06765 PF13090 Polyphosphate kinase C-terminal domain 2 YPK_RS06765 PF17941 Polyphosphate kinase C-terminal domain 1 YPK_RS06765 PF13089 Polyphosphate kinase N-terminal domain YPK_RS06770 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS06775 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS06780 PF00005 ABC transporter YPK_RS06790 PF13302 Acetyltransferase (GNAT) domain YPK_RS06795 PF00551 Formyl transferase YPK_RS06800 PF02769 AIR synthase related protein, C-terminal domain YPK_RS06800 PF00586 AIR synthase related protein, N-terminal domain YPK_RS06810 PF00860 Permease family YPK_RS06815 PF00308 Bacterial dnaA protein YPK_RS06820 PF03960 ArsC family YPK_RS06825 PF07720 Tetratricopeptide repeat YPK_RS06825 PF01435 Peptidase family M48 YPK_RS06830 PF01594 AI-2E family transporter YPK_RS06850 PF00578 AhpC/TSA family YPK_RS06855 PF01842 ACT domain YPK_RS06860 PF00701 Dihydrodipicolinate synthetase family YPK_RS06865 PF06804 NlpB/DapX lipoprotein YPK_RS06870 PF01259 SAICAR synthetase YPK_RS06875 PF04228 Putative neutral zinc metallopeptidase YPK_RS06880 PF04284 Protein of unknown function (DUF441) YPK_RS06885 PF05127 Helicase YPK_RS06885 PF17176 tRNA-binding domain YPK_RS06885 PF13718 GNAT acetyltransferase 2 YPK_RS06885 PF08351 Domain of unknown function (DUF1726) YPK_RS06890 PF13980 Uncharacterised protein family (UPF0370) YPK_RS06895 PF02557 D-alanyl-D-alanine carboxypeptidase YPK_RS06900 PF01546 Peptidase family M20/M25/M40 YPK_RS06900 PF07687 Peptidase dimerisation domain YPK_RS06905 PF03960 ArsC family YPK_RS06920 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS06925 PF08402 TOBE domain YPK_RS06925 PF00005 ABC transporter YPK_RS06930 PF00884 Sulfatase YPK_RS06935 PF13186 Iron-sulfur cluster-binding domain YPK_RS06935 PF04055 Radical SAM superfamily YPK_RS06940 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPK_RS06950 PF00873 AcrB/AcrD/AcrF family YPK_RS06960 PF00072 Response regulator receiver domain YPK_RS06960 PF00196 Bacterial regulatory proteins, luxR family YPK_RS06965 PF13187 4Fe-4S dicluster domain YPK_RS06965 PF12800 4Fe-4S binding domain YPK_RS06965 PF00037 4Fe-4S binding domain YPK_RS06970 PF03927 NapD protein YPK_RS06975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_RS06975 PF00384 Molybdopterin oxidoreductase YPK_RS06975 PF01568 Molydopterin dinucleotide binding domain YPK_RS06975 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPK_RS06980 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) YPK_RS06985 PF03264 NapC/NirT cytochrome c family, N-terminal region YPK_RS06990 PF00293 NUDIX domain YPK_RS06995 PF01515 Phosphate acetyl/butaryl transferase YPK_RS06995 PF03949 Malic enzyme, NAD binding domain YPK_RS06995 PF00390 Malic enzyme, N-terminal domain YPK_RS07000 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 YPK_RS07005 PF01218 Coproporphyrinogen III oxidase YPK_RS07010 PF00583 Acetyltransferase (GNAT) family YPK_RS07025 PF03797 Autotransporter beta-domain YPK_RS07025 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS07025 PF03212 Pertactin YPK_RS07025 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPK_RS07030 PF04076 Bacterial OB fold (BOF) protein YPK_RS07035 PF06572 Protein of unknown function (DUF1131) YPK_RS07040 PF04261 Dyp-type peroxidase family YPK_RS07045 PF00701 Dihydrodipicolinate synthetase family YPK_RS07050 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YPK_RS07055 PF12468 Type III secretion system leucine rich repeat protein YPK_RS07060 PF00480 ROK family YPK_RS07065 PF04074 YhcH/YjgK/YiaL YPK_RS07075 PF01418 Helix-turn-helix domain, rpiR family YPK_RS07075 PF01380 SIS domain YPK_RS07080 PF07690 Major Facilitator Superfamily YPK_RS07090 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS07095 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS07100 PF00005 ABC transporter YPK_RS07105 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS07110 PF12468 Type III secretion system leucine rich repeat protein YPK_RS07110 PF14496 C-terminal novel E3 ligase, LRR-interacting YPK_RS07115 PF00486 Transcriptional regulatory protein, C terminal YPK_RS07115 PF00072 Response regulator receiver domain YPK_RS07120 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS07120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS07120 PF00672 HAMP domain YPK_RS07130 PF00155 Aminotransferase class I and II YPK_RS07135 PF00557 Metallopeptidase family M24 YPK_RS07145 PF00474 Sodium:solute symporter family YPK_RS07150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_RS07150 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS07155 PF12704 MacB-like periplasmic core domain YPK_RS07155 PF02687 FtsX-like permease family YPK_RS07155 PF00005 ABC transporter YPK_RS07160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS07165 PF00486 Transcriptional regulatory protein, C terminal YPK_RS07165 PF00072 Response regulator receiver domain YPK_RS07170 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS07170 PF16527 Two-component sensor protein CpxA, periplasmic domain YPK_RS07170 PF00672 HAMP domain YPK_RS07170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS07175 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPK_RS07180 PF02896 PEP-utilising enzyme, TIM barrel domain YPK_RS07180 PF00391 PEP-utilising enzyme, mobile domain YPK_RS07180 PF05524 PEP-utilising enzyme, N-terminal YPK_RS07185 PF00381 PTS HPr component phosphorylation site YPK_RS07190 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS07200 PF04354 ZipA, C-terminal FtsZ-binding domain YPK_RS07205 PF01653 NAD-dependent DNA ligase adenylation domain YPK_RS07205 PF03120 NAD-dependent DNA ligase OB-fold domain YPK_RS07205 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YPK_RS07205 PF00533 BRCA1 C Terminus (BRCT) domain YPK_RS07205 PF12826 Helix-hairpin-helix motif YPK_RS07210 PF12843 Putative quorum-sensing-regulated virulence factor YPK_RS07235 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPK_RS07260 PF01773 Na+ dependent nucleoside transporter N-terminus YPK_RS07260 PF07662 Na+ dependent nucleoside transporter C-terminus YPK_RS07260 PF07670 Nucleoside recognition YPK_RS07265 PF01566 Natural resistance-associated macrophage protein YPK_RS07275 PF00248 Aldo/keto reductase family YPK_RS07280 PF03466 LysR substrate binding domain YPK_RS07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS07290 PF02685 Glucokinase YPK_RS07295 PF07350 Protein of unknown function (DUF1479) YPK_RS07300 PF00155 Aminotransferase class I and II YPK_RS07305 PF01292 Prokaryotic cytochrome b561 YPK_RS07315 PF03783 Curli production assembly/transport component CsgG YPK_RS07325 PF05643 Putative bacterial lipoprotein (DUF799) YPK_RS07335 PF02613 Nitrate reductase delta subunit YPK_RS07340 PF04976 DMSO reductase anchor subunit (DmsC) YPK_RS07345 PF13247 4Fe-4S dicluster domain YPK_RS07345 PF12800 4Fe-4S binding domain YPK_RS07350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_RS07350 PF00384 Molybdopterin oxidoreductase YPK_RS07350 PF01568 Molydopterin dinucleotide binding domain YPK_RS07360 PF05638 Type VI secretion system effector, Hcp YPK_RS07370 PF00005 ABC transporter YPK_RS07375 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS07385 PF13406 Transglycosylase SLT domain YPK_RS07430 PF05947 Type VI secretion system, TssF YPK_RS07435 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS07435 PF07724 AAA domain (Cdc48 subfamily) YPK_RS07435 PF17871 AAA lid domain YPK_RS07435 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_RS07440 PF16970 Type-1 fimbrial protein, A YPK_RS07445 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS07445 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS07450 PF13953 PapC C-terminal domain YPK_RS07450 PF13954 PapC N-terminal domain YPK_RS07450 PF00577 Outer membrane usher protein YPK_RS07455 PF13954 PapC N-terminal domain YPK_RS07455 PF00577 Outer membrane usher protein YPK_RS07455 PF13953 PapC C-terminal domain YPK_RS07465 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_RS07470 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_RS07485 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPK_RS07495 PF06761 Intracellular multiplication and human macrophage-killing YPK_RS07495 PF06744 Type VI secretion protein IcmF C-terminal YPK_RS07495 PF14331 ImcF-related N-terminal domain YPK_RS07500 PF04717 Type VI secretion system, phage-baseplate injector YPK_RS07515 PF07024 ImpE protein YPK_RS07530 PF08274 PhnA Zinc-Ribbon YPK_RS07530 PF03831 PhnA domain YPK_RS07540 PF04011 LemA family YPK_RS07555 PF00005 ABC transporter YPK_RS07560 PF03379 CcmB protein YPK_RS07565 PF01578 Cytochrome C assembly protein YPK_RS07570 PF04995 Heme exporter protein D (CcmD) YPK_RS07575 PF03100 CcmE YPK_RS07580 PF01578 Cytochrome C assembly protein YPK_RS07580 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YPK_RS07585 PF08534 Redoxin YPK_RS07590 PF03918 Cytochrome C biogenesis protein YPK_RS07595 PF03918 Cytochrome C biogenesis protein YPK_RS07600 PF04333 MlaA lipoprotein YPK_RS07605 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) YPK_RS07610 PF04175 Protein of unknown function (DUF406) YPK_RS07615 PF00108 Thiolase, N-terminal domain YPK_RS07615 PF02803 Thiolase, C-terminal domain YPK_RS07620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPK_RS07620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPK_RS07620 PF00378 Enoyl-CoA hydratase/isomerase YPK_RS07625 PF00300 Histidine phosphatase superfamily (branch 1) YPK_RS07630 PF01713 Smr domain YPK_RS07635 PF05175 Methyltransferase small domain YPK_RS07640 PF01264 Chorismate synthase YPK_RS07645 PF03411 Penicillin-insensitive murein endopeptidase YPK_RS07650 PF01925 Sulfite exporter TauE/SafE YPK_RS07655 PF04315 Elongation factor P hydroxylase YPK_RS07660 PF08891 YfcL protein YPK_RS07665 PF01266 FAD dependent oxidoreductase YPK_RS07665 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YPK_RS07670 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_RS07670 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_RS07675 PF01177 Asp/Glu/Hydantoin racemase YPK_RS07680 PF00419 Fimbrial protein YPK_RS07690 PF00892 EamA-like transporter family YPK_RS07705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_RS07705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_RS07705 PF11890 Domain of unknown function (DUF3410) YPK_RS07710 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPK_RS07710 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPK_RS07715 PF01416 tRNA pseudouridine synthase YPK_RS07720 PF09335 SNARE associated Golgi protein YPK_RS07725 PF01039 Carboxyl transferase domain YPK_RS07725 PF17848 Acetyl-coA carboxylase zinc finger domain YPK_RS07730 PF08245 Mur ligase middle domain YPK_RS07730 PF02875 Mur ligase family, glutamate ligase domain YPK_RS07735 PF05036 Sporulation related domain YPK_RS07740 PF02674 Colicin V production protein YPK_RS07745 PF00156 Phosphoribosyl transferase domain YPK_RS07750 PF02441 Flavoprotein YPK_RS07755 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS07760 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS07765 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS07770 PF00005 ABC transporter YPK_RS07775 PF01370 NAD dependent epimerase/dehydratase family YPK_RS07775 PF08338 Domain of unknown function (DUF1731) YPK_RS07785 PF12850 Calcineurin-like phosphoesterase superfamily domain YPK_RS07790 PF00293 NUDIX domain YPK_RS07795 PF03611 PTS system sugar-specific permease component YPK_RS07805 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_RS07810 PF00356 Bacterial regulatory proteins, lacI family YPK_RS07810 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_RS07815 PF01515 Phosphate acetyl/butaryl transferase YPK_RS07815 PF07085 DRTGG domain YPK_RS07820 PF00871 Acetokinase family YPK_RS07830 PF04217 Protein of unknown function, DUF412 YPK_RS07835 PF03887 YfbU domain YPK_RS07840 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS07845 PF03600 Citrate transporter YPK_RS07845 PF02080 TrkA-C domain YPK_RS07860 PF00155 Aminotransferase class I and II YPK_RS07870 PF03466 LysR substrate binding domain YPK_RS07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS07875 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YPK_RS07880 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YPK_RS07885 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YPK_RS07885 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YPK_RS07895 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YPK_RS07895 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPK_RS07895 PF10531 SLBB domain YPK_RS07900 PF00384 Molybdopterin oxidoreductase YPK_RS07900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_RS07900 PF01568 Molydopterin dinucleotide binding domain YPK_RS07900 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YPK_RS07905 PF00146 NADH dehydrogenase YPK_RS07910 PF12838 4Fe-4S dicluster domain YPK_RS07915 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPK_RS07920 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YPK_RS07925 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YPK_RS07925 PF00361 Proton-conducting membrane transporter YPK_RS07930 PF00361 Proton-conducting membrane transporter YPK_RS07935 PF00361 Proton-conducting membrane transporter YPK_RS07945 PF04074 YhcH/YjgK/YiaL YPK_RS07950 PF01202 Shikimate kinase YPK_RS07955 PF00106 short chain dehydrogenase YPK_RS07960 PF02638 Glycosyl hydrolase-like 10 YPK_RS07965 PF00356 Bacterial regulatory proteins, lacI family YPK_RS07975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_RS07975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_RS07980 PF07690 Major Facilitator Superfamily YPK_RS07985 PF03928 Haem-degrading YPK_RS07990 PF00920 Dehydratase family YPK_RS08005 PF05957 Bacterial protein of unknown function (DUF883) YPK_RS08015 PF00425 chorismate binding enzyme YPK_RS08020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_RS08020 PF16582 Middle domain of thiamine pyrophosphate YPK_RS08020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_RS08025 PF12697 Alpha/beta hydrolase family YPK_RS08030 PF00378 Enoyl-CoA hydratase/isomerase YPK_RS08035 PF13378 Enolase C-terminal domain-like YPK_RS08040 PF13193 AMP-binding enzyme C-terminal domain YPK_RS08040 PF00501 AMP-binding enzyme YPK_RS08045 PF02885 Glycosyl transferase family, helical bundle domain YPK_RS08050 PF07338 Protein of unknown function (DUF1471) YPK_RS08055 PF05971 RNA methyltransferase YPK_RS08065 PF13426 PAS domain YPK_RS08065 PF08447 PAS fold YPK_RS08065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_RS08070 PF00005 ABC transporter YPK_RS08075 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS08080 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS08095 PF00210 Ferritin-like domain YPK_RS08100 PF13649 Methyltransferase domain YPK_RS08110 PF00892 EamA-like transporter family YPK_RS08115 PF13505 Outer membrane protein beta-barrel domain YPK_RS08135 PF00107 Zinc-binding dehydrogenase YPK_RS08135 PF08240 Alcohol dehydrogenase GroES-like domain YPK_RS08140 PF13407 Periplasmic binding protein domain YPK_RS08145 PF00005 ABC transporter YPK_RS08150 PF02653 Branched-chain amino acid transport system / permease component YPK_RS08155 PF00356 Bacterial regulatory proteins, lacI family YPK_RS08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS08160 PF03466 LysR substrate binding domain YPK_RS08165 PF00180 Isocitrate/isopropylmalate dehydrogenase YPK_RS08175 PF02028 BCCT, betaine/carnitine/choline family transporter YPK_RS08180 PF00355 Rieske [2Fe-2S] domain YPK_RS08180 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YPK_RS08185 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_RS08185 PF00970 Oxidoreductase FAD-binding domain YPK_RS08185 PF00175 Oxidoreductase NAD-binding domain YPK_RS08190 PF08479 POTRA domain, ShlB-type YPK_RS08190 PF17287 POTRA domain YPK_RS08190 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_RS08195 PF04829 Pre-toxin domain with VENN motif YPK_RS08195 PF05860 haemagglutination activity domain YPK_RS08195 PF13332 Hemagglutinin repeat YPK_RS08195 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS08205 PF01527 Transposase YPK_RS08225 PF13332 Hemagglutinin repeat YPK_RS08225 PF04829 Pre-toxin domain with VENN motif YPK_RS08225 PF05860 haemagglutination activity domain YPK_RS08225 PF05594 Haemagluttinin repeat YPK_RS08225 PF15526 Novel toxin 21 YPK_RS08235 PF00005 ABC transporter YPK_RS08235 PF17912 MalK OB fold domain YPK_RS08240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPK_RS08240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPK_RS08240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPK_RS08240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPK_RS08245 PF00356 Bacterial regulatory proteins, lacI family YPK_RS08255 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS08260 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS08265 PF04041 beta-1,4-mannooligosaccharide phosphorylase YPK_RS08285 PF00924 Mechanosensitive ion channel YPK_RS08290 PF01867 CRISPR associated protein Cas1 YPK_RS08300 PF09611 CRISPR-associated protein (Cas_Csy1) YPK_RS08305 PF09614 CRISPR-associated protein (Cas_Csy2) YPK_RS08310 PF09615 CRISPR-associated protein (Cas_Csy3) YPK_RS08315 PF09618 CRISPR-associated protein (Cas_Csy4) YPK_RS08320 PF00248 Aldo/keto reductase family YPK_RS08330 PF00083 Sugar (and other) transporter YPK_RS08340 PF03466 LysR substrate binding domain YPK_RS08340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS08345 PF03472 Autoinducer binding domain YPK_RS08345 PF00196 Bacterial regulatory proteins, luxR family YPK_RS08350 PF00765 Autoinducer synthase YPK_RS08360 PF02080 TrkA-C domain YPK_RS08360 PF03471 Transporter associated domain YPK_RS08360 PF00999 Sodium/hydrogen exchanger family YPK_RS08370 PF01757 Acyltransferase family YPK_RS08375 PF04349 Periplasmic glucan biosynthesis protein, MdoG YPK_RS08380 PF00535 Glycosyl transferase family 2 YPK_RS08385 PF07119 Protein of unknown function (DUF1375) YPK_RS08390 PF00854 POT family YPK_RS08395 PF03279 Bacterial lipid A biosynthesis acyltransferase YPK_RS08415 PF17773 UPF0176 acylphosphatase like domain YPK_RS08415 PF12368 Rhodanase C-terminal YPK_RS08415 PF00581 Rhodanese-like domain YPK_RS08420 PF01594 AI-2E family transporter YPK_RS08425 PF00196 Bacterial regulatory proteins, luxR family YPK_RS08430 PF01266 FAD dependent oxidoreductase YPK_RS08435 PF13991 BssS protein family YPK_RS08445 PF06183 DinI-like family YPK_RS08450 PF01979 Amidohydrolase family YPK_RS08455 PF03992 Antibiotic biosynthesis monooxygenase YPK_RS08460 PF10150 Ribonuclease E/G family YPK_RS08460 PF12111 Polyribonucleotide phosphorylase C terminal YPK_RS08460 PF00575 S1 RNA binding domain YPK_RS08465 PF00849 RNA pseudouridylate synthase YPK_RS08465 PF01479 S4 domain YPK_RS08470 PF01797 Transposase IS200 like YPK_RS08475 PF02545 Maf-like protein YPK_RS08480 PF02620 Large ribosomal RNA subunit accumulation protein YceD YPK_RS08485 PF01783 Ribosomal L32p protein family YPK_RS08490 PF02504 Fatty acid synthesis protein YPK_RS08495 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPK_RS08495 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPK_RS08500 PF00698 Acyl transferase domain YPK_RS08510 PF00550 Phosphopantetheine attachment site YPK_RS08515 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_RS08515 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_RS08520 PF01063 Amino-transferase class IV YPK_RS08525 PF02618 YceG-like family YPK_RS08530 PF02223 Thymidylate kinase YPK_RS08535 PF09115 DNA polymerase III, delta subunit, C terminal YPK_RS08540 PF01026 TatD related DNase YPK_RS08545 PF00367 phosphotransferase system, EIIB YPK_RS08545 PF02378 Phosphotransferase system, EIIC YPK_RS08550 PF08501 Shikimate dehydrogenase substrate binding domain YPK_RS08555 PF01230 HIT domain YPK_RS08560 PF07233 Protein of unknown function (DUF1425) YPK_RS08565 PF13036 Peptidoglycan-synthase activator LpoB YPK_RS08565 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPK_RS08570 PF01636 Phosphotransferase enzyme family YPK_RS08575 PF00933 Glycosyl hydrolase family 3 N terminal domain YPK_RS08580 PF05728 Uncharacterised protein family (UPF0227) YPK_RS08585 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS08600 PF05433 Glycine zipper 2TM domain YPK_RS08605 PF00270 DEAD/DEAH box helicase YPK_RS08605 PF02559 CarD-like/TRCF domain YPK_RS08605 PF17757 UvrB interaction domain YPK_RS08605 PF03461 TRCF domain YPK_RS08605 PF00271 Helicase conserved C-terminal domain YPK_RS08610 PF12704 MacB-like periplasmic core domain YPK_RS08610 PF02687 FtsX-like permease family YPK_RS08615 PF00005 ABC transporter YPK_RS08620 PF02687 FtsX-like permease family YPK_RS08620 PF12704 MacB-like periplasmic core domain YPK_RS08625 PF00480 ROK family YPK_RS08630 PF02146 Sir2 family YPK_RS08635 PF07687 Peptidase dimerisation domain YPK_RS08635 PF01546 Peptidase family M20/M25/M40 YPK_RS08640 PF08007 Cupin superfamily protein YPK_RS08645 PF08918 PhoQ Sensor YPK_RS08645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS08650 PF00486 Transcriptional regulatory protein, C terminal YPK_RS08650 PF00072 Response regulator receiver domain YPK_RS08660 PF00206 Lyase YPK_RS08660 PF08328 Adenylosuccinate lyase C-terminal YPK_RS08665 PF04356 Protein of unknown function (DUF489) YPK_RS08675 PF00293 NUDIX domain YPK_RS08680 PF00849 RNA pseudouridylate synthase YPK_RS08685 PF00180 Isocitrate/isopropylmalate dehydrogenase YPK_RS08690 PF00356 Bacterial regulatory proteins, lacI family YPK_RS08690 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_RS08700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_RS08700 PF08447 PAS fold YPK_RS08705 PF05368 NmrA-like family YPK_RS08710 PF01638 HxlR-like helix-turn-helix YPK_RS08720 PF00328 Histidine phosphatase superfamily (branch 2) YPK_RS08725 PF14001 YdfZ protein YPK_RS08735 PF01037 Lrp/AsnC ligand binding domain YPK_RS08735 PF13404 AsnC-type helix-turn-helix domain YPK_RS08740 PF10777 Inner membrane protein YlaC YPK_RS08745 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_RS08745 PF14765 Polyketide synthase dehydratase YPK_RS08745 PF00107 Zinc-binding dehydrogenase YPK_RS08745 PF08240 Alcohol dehydrogenase GroES-like domain YPK_RS08745 PF08659 KR domain YPK_RS08745 PF00550 Phosphopantetheine attachment site YPK_RS08745 PF00698 Acyl transferase domain YPK_RS08745 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_RS08745 PF16197 Ketoacyl-synthetase C-terminal extension YPK_RS08750 PF02929 Beta galactosidase small chain YPK_RS08750 PF16353 Domain of unknown function(DUF4981) YPK_RS08750 PF00703 Glycosyl hydrolases family 2 YPK_RS08750 PF02837 Glycosyl hydrolases family 2, sugar binding domain YPK_RS08750 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YPK_RS08755 PF00313 'Cold-shock' DNA-binding domain YPK_RS08760 PF10781 Dextransucrase DSRB YPK_RS08765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_RS08765 PF00672 HAMP domain YPK_RS08765 PF02203 Tar ligand binding domain homologue YPK_RS08775 PF02308 MgtC family YPK_RS08780 PF00689 Cation transporting ATPase, C-terminus YPK_RS08780 PF00690 Cation transporter/ATPase, N-terminus YPK_RS08785 PF05247 Flagellar transcriptional activator (FlhD) YPK_RS08790 PF05280 Flagellar transcriptional activator (FlhC) YPK_RS08795 PF01618 MotA/TolQ/ExbB proton channel family YPK_RS08800 PF00691 OmpA family YPK_RS08800 PF13677 Membrane MotB of proton-channel complex MotA/MotB YPK_RS08805 PF09078 CheY binding YPK_RS08805 PF01584 CheW-like domain YPK_RS08805 PF02895 Signal transducing histidine kinase, homodimeric domain YPK_RS08805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS08805 PF01627 Hpt domain YPK_RS08810 PF01584 CheW-like domain YPK_RS08825 PF02203 Tar ligand binding domain homologue YPK_RS08825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_RS08825 PF00672 HAMP domain YPK_RS08835 PF03705 CheR methyltransferase, all-alpha domain YPK_RS08835 PF01739 CheR methyltransferase, SAM binding domain YPK_RS08840 PF01339 CheB methylesterase YPK_RS08840 PF00072 Response regulator receiver domain YPK_RS08845 PF00072 Response regulator receiver domain YPK_RS08850 PF04344 Chemotaxis phosphatase, CheZ YPK_RS08860 PF01510 N-acetylmuramoyl-L-alanine amidase YPK_RS08865 PF03895 YadA-like membrane anchor domain YPK_RS08865 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS08865 PF03895 YadA-like membrane anchor domain YPK_RS08865 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS08865 PF05658 Head domain of trimeric autotransporter adhesin YPK_RS08865 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS08865 PF03895 YadA-like membrane anchor domain YPK_RS08865 PF05662 Coiled stalk of trimeric autotransporter adhesin YPK_RS08865 PF05662 Coiled stalk of trimeric autotransporter adhesin YPK_RS08865 PF05658 Head domain of trimeric autotransporter adhesin YPK_RS08865 PF05662 Coiled stalk of trimeric autotransporter adhesin YPK_RS08865 PF05658 Head domain of trimeric autotransporter adhesin YPK_RS08875 PF00842 Alanine racemase, C-terminal domain YPK_RS08875 PF01168 Alanine racemase, N-terminal domain YPK_RS08905 PF07351 Protein of unknown function (DUF1480) YPK_RS08920 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS08920 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS08940 PF02470 MlaD protein YPK_RS08945 PF04403 Paraquat-inducible protein A YPK_RS08950 PF13185 GAF domain YPK_RS08955 PF17516 ProQ C-terminal domain YPK_RS08955 PF04352 ProQ/FINO family YPK_RS08960 PF11818 C-terminal domain of tail specific protease (DUF3340) YPK_RS08960 PF17804 Tail specific protease N-terminal domain YPK_RS08960 PF03572 Peptidase family S41 YPK_RS08960 PF00595 PDZ domain YPK_RS08965 PF01435 Peptidase family M48 YPK_RS08970 PF00419 Fimbrial protein YPK_RS08975 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS08975 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS08980 PF13954 PapC N-terminal domain YPK_RS08980 PF00577 Outer membrane usher protein YPK_RS08980 PF13953 PapC C-terminal domain YPK_RS08990 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS08990 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS08995 PF07690 Major Facilitator Superfamily YPK_RS09000 PF14583 Oligogalacturonate lyase YPK_RS09005 PF01614 Bacterial transcriptional regulator YPK_RS09005 PF09339 IclR helix-turn-helix domain YPK_RS09010 PF01510 N-acetylmuramoyl-L-alanine amidase YPK_RS09015 PF00375 Sodium:dicarboxylate symporter family YPK_RS09020 PF04307 LexA-binding, inner membrane-associated putative hydrolase YPK_RS09025 PF06178 Oligogalacturonate-specific porin protein (KdgM) YPK_RS09030 PF01547 Bacterial extracellular solute-binding protein YPK_RS09035 PF03459 TOBE domain YPK_RS09035 PF17912 MalK OB fold domain YPK_RS09035 PF00005 ABC transporter YPK_RS09040 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS09045 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS09050 PF06917 Periplasmic pectate lyase YPK_RS09060 PF04962 KduI/IolB family YPK_RS09065 PF07883 Cupin domain YPK_RS09070 PF00872 Transposase, Mutator family YPK_RS09080 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS09085 PF14002 YniB-like protein YPK_RS09090 PF03881 Fructosamine kinase YPK_RS09100 PF00950 ABC 3 transport family YPK_RS09105 PF00950 ABC 3 transport family YPK_RS09110 PF00005 ABC transporter YPK_RS09115 PF01297 Zinc-uptake complex component A periplasmic YPK_RS09120 PF01464 Transglycosylase SLT domain YPK_RS09125 PF01914 MarC family integral membrane protein YPK_RS09140 PF13619 KTSC domain YPK_RS09145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPK_RS09145 PF03129 Anticodon binding domain YPK_RS09145 PF02824 TGS domain YPK_RS09145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPK_RS09150 PF05198 Translation initiation factor IF-3, N-terminal domain YPK_RS09150 PF00707 Translation initiation factor IF-3, C-terminal domain YPK_RS09155 PF01632 Ribosomal protein L35 YPK_RS09160 PF00453 Ribosomal protein L20 YPK_RS09165 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YPK_RS09165 PF01409 tRNA synthetases class II core domain (F) YPK_RS09170 PF03483 B3/4 domain YPK_RS09170 PF03484 tRNA synthetase B5 domain YPK_RS09170 PF03147 Ferredoxin-fold anticodon binding domain YPK_RS09170 PF01588 Putative tRNA binding domain YPK_RS09170 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YPK_RS09175 PF00216 Bacterial DNA-binding protein YPK_RS09185 PF01032 FecCD transport family YPK_RS09190 PF00255 Glutathione peroxidase YPK_RS09195 PF00005 ABC transporter YPK_RS09200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPK_RS09205 PF00535 Glycosyl transferase family 2 YPK_RS09210 PF00551 Formyl transferase YPK_RS09210 PF02911 Formyl transferase, C-terminal domain YPK_RS09210 PF01370 NAD dependent epimerase/dehydratase family YPK_RS09215 PF01522 Polysaccharide deacetylase YPK_RS09220 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YPK_RS09225 PF00892 EamA-like transporter family YPK_RS09235 PF00877 NlpC/P60 family YPK_RS09240 PF10437 Bacterial lipoate protein ligase C-terminus YPK_RS09240 PF03099 Biotin/lipoate A/B protein ligase family YPK_RS09245 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YPK_RS09250 PF00793 DAHP synthetase I family YPK_RS09255 PF03618 Kinase/pyrophosphorylase YPK_RS09260 PF02896 PEP-utilising enzyme, TIM barrel domain YPK_RS09260 PF00391 PEP-utilising enzyme, mobile domain YPK_RS09260 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YPK_RS09265 PF01594 AI-2E family transporter YPK_RS09270 PF01565 FAD binding domain YPK_RS09270 PF02913 FAD linked oxidases, C-terminal domain YPK_RS09270 PF13183 4Fe-4S dicluster domain YPK_RS09275 PF03061 Thioesterase superfamily YPK_RS09285 PF01521 Iron-sulphur cluster biosynthesis YPK_RS09290 PF01458 Uncharacterized protein family (UPF0051) YPK_RS09295 PF00005 ABC transporter YPK_RS09300 PF01458 Uncharacterized protein family (UPF0051) YPK_RS09305 PF00266 Aminotransferase class-V YPK_RS09310 PF02657 Fe-S metabolism associated domain YPK_RS09315 PF17969 L,D-transpeptidase C-terminal domain YPK_RS09315 PF01476 LysM domain YPK_RS09315 PF03734 L,D-transpeptidase catalytic domain YPK_RS09320 PF04728 Lipoprotein leucine-zipper YPK_RS09325 PF00224 Pyruvate kinase, barrel domain YPK_RS09325 PF02887 Pyruvate kinase, alpha/beta domain YPK_RS09345 PF01554 MatE YPK_RS09350 PF00677 Lumazine binding domain YPK_RS09360 PF07690 Major Facilitator Superfamily YPK_RS09365 PF03466 LysR substrate binding domain YPK_RS09365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS09370 PF00356 Bacterial regulatory proteins, lacI family YPK_RS09375 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YPK_RS09375 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YPK_RS09380 PF00877 NlpC/P60 family YPK_RS09390 PF00462 Glutaredoxin YPK_RS09395 PF00929 Exonuclease YPK_RS09400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YPK_RS09405 PF14431 YwqJ-like deaminase YPK_RS09405 PF18807 Tripartite Tc toxins repeat YPK_RS09410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPK_RS09415 PF16925 Tetracyclin repressor-like, C-terminal domain YPK_RS09415 PF00440 Bacterial regulatory proteins, tetR family YPK_RS09420 PF00884 Sulfatase YPK_RS09420 PF08019 Phosphoethanolamine transferase EptA/EptB YPK_RS09425 PF06945 Protein of unknown function (DUF1289) YPK_RS09430 PF00248 Aldo/keto reductase family YPK_RS09435 PF01047 MarR family YPK_RS09440 PF05433 Glycine zipper 2TM domain YPK_RS09445 PF03702 Anhydro-N-acetylmuramic acid kinase YPK_RS09450 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme YPK_RS09455 PF01243 Pyridoxamine 5'-phosphate oxidase YPK_RS09455 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YPK_RS09460 PF01479 S4 domain YPK_RS09460 PF00579 tRNA synthetases class I (W and Y) YPK_RS09465 PF08543 Phosphomethylpyrimidine kinase YPK_RS09470 PF00043 Glutathione S-transferase, C-terminal domain YPK_RS09470 PF02798 Glutathione S-transferase, N-terminal domain YPK_RS09475 PF11656 YjbD family (DUF3811) YPK_RS09480 PF04893 Yip1 domain YPK_RS09485 PF00854 POT family YPK_RS09495 PF00005 ABC transporter YPK_RS09500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_RS09500 PF00005 ABC transporter YPK_RS09505 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS09505 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_RS09510 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS09515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_RS09525 PF02954 Bacterial regulatory protein, Fis family YPK_RS09525 PF00158 Sigma-54 interaction domain YPK_RS09530 PF04012 PspA/IM30 family YPK_RS09535 PF06667 Phage shock protein B YPK_RS09540 PF04024 PspC domain YPK_RS09550 PF04317 YcjX-like family, DUF463 YPK_RS09555 PF05128 Domain of unknown function (DUF697) YPK_RS09560 PF08808 RES domain YPK_RS09565 PF09722 Protein of unknown function (DUF2384) YPK_RS09570 PF00158 Sigma-54 interaction domain YPK_RS09570 PF18024 Helix-turn-helix domain YPK_RS09575 PF08534 Redoxin YPK_RS09580 PF13378 Enolase C-terminal domain-like YPK_RS09580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPK_RS09585 PF00246 Zinc carboxypeptidase YPK_RS09590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_RS09595 PF01544 CorA-like Mg2+ transporter protein YPK_RS09605 PF07859 alpha/beta hydrolase fold YPK_RS09610 PF01171 PP-loop family YPK_RS09615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_RS09615 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase YPK_RS09615 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II YPK_RS09615 PF10371 Domain of unknown function YPK_RS09615 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg YPK_RS09620 PF00893 Small Multidrug Resistance protein YPK_RS09625 PF02308 MgtC family YPK_RS09630 PF03891 Domain of unknown function (DUF333) YPK_RS09635 PF03724 META domain YPK_RS09640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_RS09640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_RS09645 PF11739 Dicarboxylate transport YPK_RS09650 PF13617 YnbE-like lipoprotein YPK_RS09655 PF07027 Protein of unknown function (DUF1318) YPK_RS09660 PF01232 Mannitol dehydrogenase Rossmann domain YPK_RS09660 PF08125 Mannitol dehydrogenase C-terminal domain YPK_RS09665 PF04198 Putative sugar-binding domain YPK_RS09665 PF00325 Bacterial regulatory proteins, crp family YPK_RS09670 PF02525 Flavodoxin-like fold YPK_RS09675 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YPK_RS09675 PF11898 Domain of unknown function (DUF3418) YPK_RS09675 PF04408 Helicase associated domain (HA2) YPK_RS09675 PF00270 DEAD/DEAH box helicase YPK_RS09675 PF00271 Helicase conserved C-terminal domain YPK_RS09690 PF00089 Trypsin YPK_RS09705 PF01292 Prokaryotic cytochrome b561 YPK_RS09710 PF04264 YceI-like domain YPK_RS09730 PF02074 Carboxypeptidase Taq (M32) metallopeptidase YPK_RS09735 PF00672 HAMP domain YPK_RS09735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS09735 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS09740 PF00072 Response regulator receiver domain YPK_RS09740 PF00486 Transcriptional regulatory protein, C terminal YPK_RS09750 PF13520 Amino acid permease YPK_RS09755 PF07338 Protein of unknown function (DUF1471) YPK_RS09765 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YPK_RS09765 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YPK_RS09765 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YPK_RS09770 PF02233 NAD(P) transhydrogenase beta subunit YPK_RS09775 PF00582 Universal stress protein family YPK_RS09780 PF13545 Crp-like helix-turn-helix domain YPK_RS09780 PF00027 Cyclic nucleotide-binding domain YPK_RS09785 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPK_RS09785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPK_RS09790 PF00245 Alkaline phosphatase YPK_RS09805 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS09810 PF01842 ACT domain YPK_RS09815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_RS09815 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_RS09815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_RS09840 PF01048 Phosphorylase superfamily YPK_RS09840 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YPK_RS09845 PF00005 ABC transporter YPK_RS09850 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS09855 PF09084 NMT1/THI5 like YPK_RS09865 PF00005 ABC transporter YPK_RS09870 PF02653 Branched-chain amino acid transport system / permease component YPK_RS09875 PF13407 Periplasmic binding protein domain YPK_RS09885 PF00356 Bacterial regulatory proteins, lacI family YPK_RS09890 PF03553 Na+/H+ antiporter family YPK_RS09895 PF00155 Aminotransferase class I and II YPK_RS09905 PF13700 Domain of unknown function (DUF4158) YPK_RS09905 PF01526 Tn3 transposase DDE domain YPK_RS09915 PF00892 EamA-like transporter family YPK_RS09925 PF00171 Aldehyde dehydrogenase family YPK_RS09930 PF00158 Sigma-54 interaction domain YPK_RS09930 PF02954 Bacterial regulatory protein, Fis family YPK_RS09930 PF01590 GAF domain YPK_RS09935 PF00106 short chain dehydrogenase YPK_RS09940 PF06932 Protein of unknown function (DUF1283) YPK_RS09945 PF06649 Protein of unknown function (DUF1161) YPK_RS09950 PF00654 Voltage gated chloride channel YPK_RS09960 PF00480 ROK family YPK_RS09965 PF03466 LysR substrate binding domain YPK_RS09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS09970 PF07690 Major Facilitator Superfamily YPK_RS09975 PF05472 DNA replication terminus site-binding protein (Ter protein) YPK_RS09980 PF00206 Lyase YPK_RS09980 PF10415 Fumarase C C-terminus YPK_RS09985 PF01238 Phosphomannose isomerase type I YPK_RS09990 PF06097 Bacterial protein of unknown function (DUF945) YPK_RS09995 PF07702 UTRA domain YPK_RS09995 PF00392 Bacterial regulatory proteins, gntR family YPK_RS10000 PF00367 phosphotransferase system, EIIB YPK_RS10000 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPK_RS10000 PF02378 Phosphotransferase system, EIIC YPK_RS10015 PF00962 Adenosine/AMP deaminase YPK_RS10020 PF13593 SBF-like CPA transporter family (DUF4137) YPK_RS10025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_RS10025 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_RS10030 PF12833 Helix-turn-helix domain YPK_RS10030 PF02311 AraC-like ligand binding domain YPK_RS10035 PF02653 Branched-chain amino acid transport system / permease component YPK_RS10040 PF00005 ABC transporter YPK_RS10045 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_RS10050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS10055 PF02610 L-arabinose isomerase YPK_RS10055 PF11762 L-arabinose isomerase C-terminal domain YPK_RS10060 PF00664 ABC transporter transmembrane region YPK_RS10060 PF00005 ABC transporter YPK_RS10060 PF03412 Peptidase C39 family YPK_RS10065 PF13533 Biotin-lipoyl like YPK_RS10070 PF00664 ABC transporter transmembrane region YPK_RS10070 PF00005 ABC transporter YPK_RS10070 PF03412 Peptidase C39 family YPK_RS10075 PF10754 Protein of unknown function (DUF2569) YPK_RS10080 PF02508 Rnf-Nqr subunit, membrane protein YPK_RS10085 PF04060 Putative Fe-S cluster YPK_RS10090 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YPK_RS10090 PF10531 SLBB domain YPK_RS10090 PF13375 RnfC Barrel sandwich hybrid domain YPK_RS10090 PF13237 4Fe-4S dicluster domain YPK_RS10095 PF06445 GyrI-like small molecule binding domain YPK_RS10095 PF12833 Helix-turn-helix domain YPK_RS10100 PF03116 NQR2, RnfD, RnfE family YPK_RS10105 PF04205 FMN-binding domain YPK_RS10110 PF02508 Rnf-Nqr subunit, membrane protein YPK_RS10115 PF10576 Iron-sulfur binding domain of endonuclease III YPK_RS10115 PF00633 Helix-hairpin-helix motif YPK_RS10115 PF00730 HhH-GPD superfamily base excision DNA repair protein YPK_RS10120 PF01370 NAD dependent epimerase/dehydratase family YPK_RS10125 PF07690 Major Facilitator Superfamily YPK_RS10130 PF00575 S1 RNA binding domain YPK_RS10130 PF00773 RNB domain YPK_RS10130 PF08206 Ribonuclease B OB domain YPK_RS10130 PF17876 Cold shock domain YPK_RS10135 PF02554 Carbon starvation protein CstA YPK_RS10135 PF13722 5TM C-terminal transporter carbon starvation CstA YPK_RS10140 PF04328 Selenoprotein, putative YPK_RS10145 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPK_RS10155 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_RS10160 PF05433 Glycine zipper 2TM domain YPK_RS10165 PF01253 Translation initiation factor SUI1 YPK_RS10170 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YPK_RS10180 PF18073 Rubredoxin metal binding domain YPK_RS10185 PF06305 Lipopolysaccharide assembly protein A domain YPK_RS10190 PF01569 PAP2 superfamily YPK_RS10195 PF00925 GTP cyclohydrolase II YPK_RS10200 PF00694 Aconitase C-terminal domain YPK_RS10200 PF00330 Aconitase family (aconitate hydratase) YPK_RS10210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS10210 PF03466 LysR substrate binding domain YPK_RS10215 PF01751 Toprim domain YPK_RS10215 PF01396 Topoisomerase DNA binding C4 zinc finger YPK_RS10215 PF08272 Topoisomerase I zinc-ribbon-like YPK_RS10215 PF01131 DNA topoisomerase YPK_RS10225 PF10692 Protein of unknown function (DUF2498) YPK_RS10230 PF08496 Peptidase family S49 N-terminal YPK_RS10230 PF01343 Peptidase family S49 YPK_RS10235 PF00106 short chain dehydrogenase YPK_RS10240 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YPK_RS10245 PF00849 RNA pseudouridylate synthase YPK_RS10245 PF01479 S4 domain YPK_RS10250 PF01300 Telomere recombination YPK_RS10255 PF02811 PHP domain YPK_RS10270 PF00425 chorismate binding enzyme YPK_RS10270 PF04715 Anthranilate synthase component I, N terminal region YPK_RS10275 PF00117 Glutamine amidotransferase class-I YPK_RS10280 PF00591 Glycosyl transferase family, a/b domain YPK_RS10280 PF02885 Glycosyl transferase family, helical bundle domain YPK_RS10285 PF00218 Indole-3-glycerol phosphate synthase YPK_RS10285 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YPK_RS10290 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS10295 PF00290 Tryptophan synthase alpha chain YPK_RS10305 PF03922 OmpW family YPK_RS10325 PF04279 Intracellular septation protein A YPK_RS10330 PF03061 Thioesterase superfamily YPK_RS10335 PF03544 Gram-negative bacterial TonB protein C-terminal YPK_RS10340 PF03795 YCII-related domain YPK_RS10355 PF13505 Outer membrane protein beta-barrel domain YPK_RS10360 PF13396 Phospholipase_D-nuclease N-terminal YPK_RS10360 PF13091 PLD-like domain YPK_RS10365 PF04269 Protein of unknown function, DUF440 YPK_RS10375 PF00005 ABC transporter YPK_RS10375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_RS10380 PF00005 ABC transporter YPK_RS10380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_RS10385 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_RS10385 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS10390 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS10395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_RS10400 PF01914 MarC family integral membrane protein YPK_RS10405 PF00465 Iron-containing alcohol dehydrogenase YPK_RS10405 PF00171 Aldehyde dehydrogenase family YPK_RS10410 PF00265 Thymidine kinase YPK_RS10415 PF00816 H-NS histone family YPK_RS10420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPK_RS10420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPK_RS10420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPK_RS10425 PF00072 Response regulator receiver domain YPK_RS10430 PF02810 SEC-C motif YPK_RS10435 PF01842 ACT domain YPK_RS10435 PF00551 Formyl transferase YPK_RS10450 PF03466 LysR substrate binding domain YPK_RS10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS10455 PF03372 Endonuclease/Exonuclease/phosphatase family YPK_RS10460 PF00293 NUDIX domain YPK_RS10465 PF07383 Protein of unknown function (DUF1496) YPK_RS10470 PF01751 Toprim domain YPK_RS10470 PF01131 DNA topoisomerase YPK_RS10475 PF02769 AIR synthase related protein, C-terminal domain YPK_RS10475 PF00586 AIR synthase related protein, N-terminal domain YPK_RS10480 PF00881 Nitroreductase family YPK_RS10485 PF01343 Peptidase family S49 YPK_RS10490 PF00710 Asparaginase, N-terminal YPK_RS10490 PF17763 Glutaminase/Asparaginase C-terminal domain YPK_RS10495 PF00857 Isochorismatase family YPK_RS10500 PF07023 Protein of unknown function (DUF1315) YPK_RS10505 PF01641 SelR domain YPK_RS10510 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YPK_RS10510 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YPK_RS10515 PF01263 Aldose 1-epimerase YPK_RS10520 PF06629 MltA-interacting protein MipA YPK_RS10525 PF08298 PrkA AAA domain YPK_RS10525 PF06798 PrkA serine protein kinase C-terminal domain YPK_RS10530 PF04285 Protein of unknown function (DUF444) YPK_RS10540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS10540 PF03466 LysR substrate binding domain YPK_RS10545 PF02678 Pirin YPK_RS10545 PF05726 Pirin C-terminal cupin domain YPK_RS10550 PF07690 Major Facilitator Superfamily YPK_RS10555 PF01266 FAD dependent oxidoreductase YPK_RS10560 PF04293 SpoVR like protein YPK_RS10565 PF00392 Bacterial regulatory proteins, gntR family YPK_RS10565 PF07840 FadR C-terminal domain YPK_RS10570 PF06450 Bacterial Na+/H+ antiporter B (NhaB) YPK_RS10575 PF02600 Disulfide bond formation protein DsbB YPK_RS10590 PF00266 Aminotransferase class-V YPK_RS10600 PF03692 Putative zinc- or iron-chelating domain YPK_RS10605 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_RS10610 PF13406 Transglycosylase SLT domain YPK_RS10615 PF05166 YcgL domain YPK_RS10620 PF03775 Septum formation inhibitor MinC, C-terminal domain YPK_RS10620 PF05209 Septum formation inhibitor MinC, N-terminal domain YPK_RS10625 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YPK_RS10630 PF03776 Septum formation topological specificity factor MinE YPK_RS10635 PF01612 3'-5' exonuclease YPK_RS10635 PF00570 HRDC domain YPK_RS10640 PF13193 AMP-binding enzyme C-terminal domain YPK_RS10640 PF00501 AMP-binding enzyme YPK_RS10645 PF03843 Outer membrane lipoprotein Slp family YPK_RS10650 PF00814 Glycoprotease family YPK_RS10655 PF13307 Helicase C-terminal domain YPK_RS10655 PF04851 Type III restriction enzyme, res subunit YPK_RS10660 PF01042 Endoribonuclease L-PSP YPK_RS10665 PF00893 Small Multidrug Resistance protein YPK_RS10670 PF00893 Small Multidrug Resistance protein YPK_RS10675 PF01081 KDPG and KHG aldolase YPK_RS10680 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YPK_RS10680 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YPK_RS10685 PF01380 SIS domain YPK_RS10685 PF01418 Helix-turn-helix domain, rpiR family YPK_RS10690 PF00224 Pyruvate kinase, barrel domain YPK_RS10690 PF02887 Pyruvate kinase, alpha/beta domain YPK_RS10695 PF03279 Bacterial lipid A biosynthesis acyltransferase YPK_RS10700 PF01476 LysM domain YPK_RS10700 PF08525 Opacity-associated protein A N-terminal motif YPK_RS10700 PF01551 Peptidase family M23 YPK_RS10705 PF01297 Zinc-uptake complex component A periplasmic YPK_RS10710 PF00005 ABC transporter YPK_RS10715 PF00950 ABC 3 transport family YPK_RS10720 PF17864 RuvB AAA lid domain YPK_RS10720 PF05491 RuvB C-terminal winged helix domain YPK_RS10720 PF05496 Holliday junction DNA helicase RuvB P-loop domain YPK_RS10725 PF01330 RuvA N terminal domain YPK_RS10725 PF07499 RuvA, C-terminal domain YPK_RS10730 PF02075 Crossover junction endodeoxyribonuclease RuvC YPK_RS10735 PF01709 Transcriptional regulator YPK_RS10740 PF00293 NUDIX domain YPK_RS10745 PF00152 tRNA synthetases class II (D, K and N) YPK_RS10745 PF02938 GAD domain YPK_RS10745 PF01336 OB-fold nucleic acid binding domain YPK_RS10750 PF01904 Protein of unknown function DUF72 YPK_RS10755 PF01124 MAPEG family YPK_RS10760 PF13649 Methyltransferase domain YPK_RS10765 PF08003 Protein of unknown function (DUF1698) YPK_RS10770 PF03932 CutC family YPK_RS10775 PF06185 YecM protein YPK_RS10780 PF05746 DALR anticodon binding domain YPK_RS10780 PF00750 tRNA synthetases class I (R) YPK_RS10780 PF03485 Arginyl tRNA synthetase N terminal domain YPK_RS10785 PF13332 Hemagglutinin repeat YPK_RS10785 PF05860 haemagglutination activity domain YPK_RS10790 PF08479 POTRA domain, ShlB-type YPK_RS10790 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_RS10790 PF17287 POTRA domain YPK_RS10795 PF03023 Lipid II flippase MurJ YPK_RS10800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_RS10805 PF04337 Protein of unknown function, DUF480 YPK_RS10810 PF13302 Acetyltransferase (GNAT) domain YPK_RS10815 PF07690 Major Facilitator Superfamily YPK_RS10820 PF07273 Protein of unknown function (DUF1439) YPK_RS10825 PF02613 Nitrate reductase delta subunit YPK_RS10830 PF02811 PHP domain YPK_RS10840 PF00480 ROK family YPK_RS10840 PF01325 Iron dependent repressor, N-terminal DNA binding domain YPK_RS10845 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_RS10850 PF08402 TOBE domain YPK_RS10850 PF00005 ABC transporter YPK_RS10855 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS10860 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS10870 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_RS10885 PF01740 STAS domain YPK_RS10885 PF00916 Sulfate permease family YPK_RS10890 PF00793 DAHP synthetase I family YPK_RS10895 PF13369 Transglutaminase-like superfamily YPK_RS10900 PF04247 Invasion gene expression up-regulator, SirB YPK_RS10905 PF17827 PrmC N-terminal domain YPK_RS10905 PF13847 Methyltransferase domain YPK_RS10910 PF03462 PCRF domain YPK_RS10910 PF00472 RF-1 domain YPK_RS10915 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YPK_RS10915 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YPK_RS10915 PF01488 Shikimate / quinate 5-dehydrogenase YPK_RS10920 PF03550 Outer membrane lipoprotein LolB YPK_RS10925 PF00288 GHMP kinases N terminal domain YPK_RS10925 PF08544 GHMP kinases C terminal YPK_RS10935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YPK_RS10935 PF14572 Phosphoribosyl synthetase-associated domain YPK_RS10945 PF10762 Protein of unknown function (DUF2583) YPK_RS10950 PF01195 Peptidyl-tRNA hydrolase YPK_RS10955 PF06071 Protein of unknown function (DUF933) YPK_RS10955 PF01926 50S ribosome-binding GTPase YPK_RS10975 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YPK_RS10980 PF00486 Transcriptional regulatory protein, C terminal YPK_RS10980 PF00072 Response regulator receiver domain YPK_RS10985 PF00672 HAMP domain YPK_RS10985 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS10985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS11025 PF08242 Methyltransferase domain YPK_RS11090 PF01370 NAD dependent epimerase/dehydratase family YPK_RS11095 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YPK_RS11095 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YPK_RS11105 PF05962 HutD YPK_RS11110 PF01979 Amidohydrolase family YPK_RS11115 PF00392 Bacterial regulatory proteins, gntR family YPK_RS11115 PF07702 UTRA domain YPK_RS11120 PF01979 Amidohydrolase family YPK_RS11130 PF00267 Gram-negative porin YPK_RS11135 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family YPK_RS11140 PF04996 Succinylarginine dihydrolase YPK_RS11145 PF00171 Aldehyde dehydrogenase family YPK_RS11150 PF04958 Arginine N-succinyltransferase beta subunit YPK_RS11155 PF00202 Aminotransferase class-III YPK_RS11165 PF00155 Aminotransferase class I and II YPK_RS11165 PF00392 Bacterial regulatory proteins, gntR family YPK_RS11170 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YPK_RS11170 PF00672 HAMP domain YPK_RS11170 PF07730 Histidine kinase YPK_RS11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS11175 PF01699 Sodium/calcium exchanger protein YPK_RS11180 PF01797 Transposase IS200 like YPK_RS11185 PF02562 PhoH-like protein YPK_RS11200 PF13994 PgaD-like protein YPK_RS11205 PF00535 Glycosyl transferase family 2 YPK_RS11210 PF01522 Polysaccharide deacetylase YPK_RS11210 PF14883 Hypothetical glycosyl hydrolase family 13 YPK_RS11220 PF00557 Metallopeptidase family M24 YPK_RS11225 PF09313 Domain of unknown function (DUF1971) YPK_RS11225 PF03848 Tellurite resistance protein TehB YPK_RS11235 PF00578 AhpC/TSA family YPK_RS11240 PF12704 MacB-like periplasmic core domain YPK_RS11240 PF00005 ABC transporter YPK_RS11240 PF02687 FtsX-like permease family YPK_RS11250 PF00005 ABC transporter YPK_RS11250 PF02687 FtsX-like permease family YPK_RS11250 PF12704 MacB-like periplasmic core domain YPK_RS11260 PF10634 Fe2+ transport protein YPK_RS11265 PF03239 Iron permease FTR1 family YPK_RS11275 PF04960 Glutaminase YPK_RS11280 PF00455 DeoR C terminal sensor domain YPK_RS11280 PF08220 DeoR-like helix-turn-helix domain YPK_RS11285 PF00324 Amino acid permease YPK_RS11290 PF00155 Aminotransferase class I and II YPK_RS11295 PF02508 Rnf-Nqr subunit, membrane protein YPK_RS11305 PF04909 Amidohydrolase YPK_RS11325 PF03466 LysR substrate binding domain YPK_RS11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS11330 PF03328 HpcH/HpaI aldolase/citrate lyase family YPK_RS11335 PF01575 MaoC like domain YPK_RS11340 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YPK_RS11340 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YPK_RS11345 PF00072 Response regulator receiver domain YPK_RS11345 PF00196 Bacterial regulatory proteins, luxR family YPK_RS11365 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS11365 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS11370 PF00577 Outer membrane usher protein YPK_RS11370 PF13954 PapC N-terminal domain YPK_RS11370 PF13953 PapC C-terminal domain YPK_RS11380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS11380 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS11395 PF08402 TOBE domain YPK_RS11395 PF00005 ABC transporter YPK_RS11400 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS11405 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS11415 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_RS11415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_RS11425 PF00392 Bacterial regulatory proteins, gntR family YPK_RS11425 PF07702 UTRA domain YPK_RS11500 PF17482 Phage tail sheath C-terminal domain YPK_RS11500 PF04984 Phage tail sheath protein subtilisin-like domain YPK_RS11535 PF02899 Phage integrase, N-terminal SAM-like domain YPK_RS11535 PF00589 Phage integrase family YPK_RS11590 PF00929 Exonuclease YPK_RS11595 PF02086 D12 class N6 adenine-specific DNA methyltransferase YPK_RS11600 PF00145 C-5 cytosine-specific DNA methylase YPK_RS11605 PF05840 Bacteriophage replication gene A protein (GPA) YPK_RS11730 PF04984 Phage tail sheath protein subtilisin-like domain YPK_RS11730 PF17482 Phage tail sheath C-terminal domain YPK_RS11760 PF04606 Ogr/Delta-like zinc finger YPK_RS11780 PF01066 CDP-alcohol phosphatidyltransferase YPK_RS11785 PF08459 UvrC Helix-hairpin-helix N-terminal YPK_RS11785 PF02151 UvrB/uvrC motif YPK_RS11785 PF01541 GIY-YIG catalytic domain YPK_RS11790 PF00072 Response regulator receiver domain YPK_RS11790 PF00196 Bacterial regulatory proteins, luxR family YPK_RS11795 PF10769 Protein of unknown function (DUF2594) YPK_RS11800 PF06942 GlpM protein YPK_RS11810 PF13505 Outer membrane protein beta-barrel domain YPK_RS11820 PF00324 Amino acid permease YPK_RS11825 PF01344 Kelch motif YPK_RS11830 PF03358 NADPH-dependent FMN reductase YPK_RS11835 PF04261 Dyp-type peroxidase family YPK_RS11840 PF09375 Imelysin YPK_RS11840 PF13473 Cupredoxin-like domain YPK_RS11845 PF03239 Iron permease FTR1 family YPK_RS11850 PF00474 Sodium:solute symporter family YPK_RS11860 PF00171 Aldehyde dehydrogenase family YPK_RS11860 PF01619 Proline dehydrogenase YPK_RS11860 PF14850 DNA-binding domain of Proline dehydrogenase YPK_RS11860 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YPK_RS11875 PF00005 ABC transporter YPK_RS11880 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS11885 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS11890 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS11895 PF02899 Phage integrase, N-terminal SAM-like domain YPK_RS11900 PF04545 Sigma-70, region 4 YPK_RS11900 PF04539 Sigma-70 region 3 YPK_RS11900 PF04542 Sigma-70 region 2 YPK_RS11905 PF00669 Bacterial flagellin N-terminal helical region YPK_RS11905 PF08884 Flagellin D3 domain YPK_RS11905 PF00700 Bacterial flagellin C-terminal helical region YPK_RS11910 PF07196 Flagellin hook IN motif YPK_RS11910 PF07195 Flagellar hook-associated protein 2 C-terminus YPK_RS11910 PF02465 Flagellar hook-associated protein 2 N-terminus YPK_RS11915 PF02561 Flagellar protein FliS YPK_RS11920 PF05400 Flagellar protein FliT YPK_RS11930 PF12833 Helix-turn-helix domain YPK_RS11935 PF01966 HD domain YPK_RS11940 PF00730 HhH-GPD superfamily base excision DNA repair protein YPK_RS11955 PF02049 Flagellar hook-basal body complex protein FliE YPK_RS11960 PF08345 Flagellar M-ring protein C-terminal YPK_RS11960 PF01514 Secretory protein of YscJ/FliF family YPK_RS11965 PF01706 FliG C-terminal domain YPK_RS11965 PF14841 FliG middle domain YPK_RS11965 PF14842 FliG N-terminal domain YPK_RS11970 PF02108 Flagellar assembly protein FliH YPK_RS11975 PF18269 T3SS EscN ATPase C-terminal domain YPK_RS11975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_RS11980 PF02050 Flagellar FliJ protein YPK_RS11985 PF02120 Flagellar hook-length control protein FliK YPK_RS11990 PF03748 Flagellar basal body-associated protein FliL YPK_RS11995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPK_RS11995 PF02154 Flagellar motor switch protein FliM YPK_RS12000 PF16973 Flagellar motor switch protein FliN N-terminal YPK_RS12000 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YPK_RS12005 PF04347 Flagellar biosynthesis protein, FliO YPK_RS12010 PF00813 FliP family YPK_RS12015 PF01313 Bacterial export proteins, family 3 YPK_RS12020 PF01311 Bacterial export proteins, family 1 YPK_RS12030 PF00294 pfkB family carbohydrate kinase YPK_RS12035 PF02653 Branched-chain amino acid transport system / permease component YPK_RS12040 PF00005 ABC transporter YPK_RS12045 PF13407 Periplasmic binding protein domain YPK_RS12050 PF02653 Branched-chain amino acid transport system / permease component YPK_RS12055 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_RS12060 PF04198 Putative sugar-binding domain YPK_RS12065 PF00669 Bacterial flagellin N-terminal helical region YPK_RS12070 PF00460 Flagella basal body rod protein YPK_RS12070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_RS12075 PF10135 Rod binding protein YPK_RS12075 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YPK_RS12080 PF02119 Flagellar P-ring protein YPK_RS12085 PF02107 Flagellar L-ring protein YPK_RS12090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_RS12090 PF00460 Flagella basal body rod protein YPK_RS12095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_RS12095 PF00460 Flagella basal body rod protein YPK_RS12100 PF07559 Flagellar basal body protein FlaE YPK_RS12100 PF00460 Flagella basal body rod protein YPK_RS12100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_RS12105 PF13861 FlgD Tudor-like domain YPK_RS12105 PF13860 FlgD Ig-like domain YPK_RS12105 PF03963 Flagellar hook capping protein - N-terminal region YPK_RS12110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YPK_RS12110 PF00460 Flagella basal body rod protein YPK_RS12115 PF00460 Flagella basal body rod protein YPK_RS12120 PF17656 FlgA N-terminal domain YPK_RS12120 PF13144 Chaperone for flagella basal body P-ring formation YPK_RS12125 PF04316 Anti-sigma-28 factor, FlgM YPK_RS12130 PF05130 FlgN protein YPK_RS12135 PF07979 Intimin C-type lectin domain YPK_RS12135 PF02369 Bacterial Ig-like domain (group 1) YPK_RS12135 PF09134 Invasin, domain 3 YPK_RS12135 PF11924 Inverse autotransporter, beta-domain YPK_RS12140 PF11924 Inverse autotransporter, beta-domain YPK_RS12140 PF07979 Intimin C-type lectin domain YPK_RS12140 PF09134 Invasin, domain 3 YPK_RS12140 PF02369 Bacterial Ig-like domain (group 1) YPK_RS12145 PF06366 Flagellar protein FlhE YPK_RS12150 PF00771 FHIPEP family YPK_RS12155 PF01312 FlhB HrpN YscU SpaS Family YPK_RS12175 PF10709 Protein of unknown function (DUF2511) YPK_RS12185 PF04234 CopC domain YPK_RS12190 PF00210 Ferritin-like domain YPK_RS12195 PF06440 DNA polymerase III, theta subunit YPK_RS12200 PF00561 alpha/beta hydrolase fold YPK_RS12205 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain YPK_RS12205 PF00326 Prolyl oligopeptidase family YPK_RS12210 PF13995 YebF-like protein YPK_RS12215 PF04266 ASCH domain YPK_RS12220 PF07130 YebG protein YPK_RS12225 PF03880 DbpA RNA binding domain YPK_RS12225 PF00270 DEAD/DEAH box helicase YPK_RS12225 PF00271 Helicase conserved C-terminal domain YPK_RS12230 PF02222 ATP-grasp domain YPK_RS12235 PF03701 Uncharacterised protein family (UPF0181) YPK_RS12240 PF00425 chorismate binding enzyme YPK_RS12240 PF04715 Anthranilate synthase component I, N terminal region YPK_RS12245 PF00293 NUDIX domain YPK_RS12250 PF03315 Serine dehydratase beta chain YPK_RS12250 PF03313 Serine dehydratase alpha chain YPK_RS12255 PF01613 Flavin reductase like domain YPK_RS12260 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal YPK_RS12260 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal YPK_RS12265 PF07690 Major Facilitator Superfamily YPK_RS12270 PF03328 HpcH/HpaI aldolase/citrate lyase family YPK_RS12275 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_RS12280 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase YPK_RS12285 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YPK_RS12290 PF00171 Aldehyde dehydrogenase family YPK_RS12295 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_RS12300 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_RS12305 PF01047 MarR family YPK_RS12310 PF03471 Transporter associated domain YPK_RS12310 PF03741 Integral membrane protein TerC family YPK_RS12315 PF03610 PTS system fructose IIA component YPK_RS12315 PF03830 PTS system sorbose subfamily IIB component YPK_RS12320 PF03609 PTS system sorbose-specific iic component YPK_RS12325 PF03613 PTS system mannose/fructose/sorbose family IID component YPK_RS12330 PF06173 Protein of unknown function (DUF986) YPK_RS12335 PF02659 Putative manganese efflux pump YPK_RS12340 PF07715 TonB-dependent Receptor Plug Domain YPK_RS12340 PF00593 TonB dependent receptor YPK_RS12345 PF13426 PAS domain YPK_RS12345 PF08447 PAS fold YPK_RS12345 PF05231 MASE1 YPK_RS12345 PF08448 PAS fold YPK_RS12345 PF00990 Diguanylate cyclase, GGDEF domain YPK_RS12345 PF00563 EAL domain YPK_RS12355 PF13847 Methyltransferase domain YPK_RS12360 PF02578 Multi-copper polyphenol oxidoreductase laccase YPK_RS12365 PF00313 'Cold-shock' DNA-binding domain YPK_RS12370 PF10736 Protein of unknown function (DUF2627) YPK_RS12380 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP YPK_RS12385 PF00324 Amino acid permease YPK_RS12400 PF13974 YebO-like protein YPK_RS12405 PF13996 YobH-like protein YPK_RS12410 PF10964 Protein of unknown function (DUF2766) YPK_RS12420 PF12833 Helix-turn-helix domain YPK_RS12430 PF00005 ABC transporter YPK_RS12430 PF00664 ABC transporter transmembrane region YPK_RS12445 PF06167 Glucose-regulated metallo-peptidase M90 YPK_RS12455 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_RS12455 PF00356 Bacterial regulatory proteins, lacI family YPK_RS12460 PF01306 LacY proton/sugar symporter YPK_RS12465 PF16874 Glycosyl hydrolase family 36 C-terminal domain YPK_RS12465 PF16875 Glycosyl hydrolase family 36 N-terminal domain YPK_RS12475 PF17837 4'-phosphopantetheinyl transferase N-terminal domain YPK_RS12475 PF01648 4'-phosphopantetheinyl transferase superfamily YPK_RS12480 PF03480 Bacterial extracellular solute-binding protein, family 7 YPK_RS12490 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YPK_RS12495 PF00196 Bacterial regulatory proteins, luxR family YPK_RS12495 PF00072 Response regulator receiver domain YPK_RS12505 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) YPK_RS12515 PF01522 Polysaccharide deacetylase YPK_RS12525 PF01554 MatE YPK_RS12530 PF00764 Arginosuccinate synthase YPK_RS12535 PF01070 FMN-dependent dehydrogenase YPK_RS12540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YPK_RS12540 PF13378 Enolase C-terminal domain-like YPK_RS12545 PF01557 Fumarylacetoacetate (FAA) hydrolase family YPK_RS12555 PF04134 Protein of unknown function, DUF393 YPK_RS12560 PF07690 Major Facilitator Superfamily YPK_RS12565 PF02369 Bacterial Ig-like domain (group 1) YPK_RS12565 PF09134 Invasin, domain 3 YPK_RS12565 PF11924 Inverse autotransporter, beta-domain YPK_RS12570 PF04363 Protein of unknown function (DUF496) YPK_RS12580 PF00929 Exonuclease YPK_RS12580 PF08411 Exonuclease C-terminal YPK_RS12585 PF13520 Amino acid permease YPK_RS12595 PF00465 Iron-containing alcohol dehydrogenase YPK_RS12600 PF00005 ABC transporter YPK_RS12605 PF02653 Branched-chain amino acid transport system / permease component YPK_RS12620 PF01370 NAD dependent epimerase/dehydratase family YPK_RS12625 PF01634 ATP phosphoribosyltransferase YPK_RS12625 PF08029 HisG, C-terminal domain YPK_RS12630 PF00815 Histidinol dehydrogenase YPK_RS12635 PF00155 Aminotransferase class I and II YPK_RS12640 PF00475 Imidazoleglycerol-phosphate dehydratase YPK_RS12645 PF00117 Glutamine amidotransferase class-I YPK_RS12650 PF00977 Histidine biosynthesis protein YPK_RS12655 PF00977 Histidine biosynthesis protein YPK_RS12660 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YPK_RS12660 PF01502 Phosphoribosyl-AMP cyclohydrolase YPK_RS12665 PF01797 Transposase IS200 like YPK_RS12675 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YPK_RS12675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YPK_RS12680 PF00483 Nucleotidyl transferase YPK_RS12685 PF00483 Nucleotidyl transferase YPK_RS12690 PF06276 Ferric iron reductase FhuF-like transporter YPK_RS12690 PF04183 IucA / IucC family YPK_RS12695 PF07660 Secretin and TonB N terminus short domain YPK_RS12695 PF00593 TonB dependent receptor YPK_RS12695 PF07715 TonB-dependent Receptor Plug Domain YPK_RS12700 PF01497 Periplasmic binding protein YPK_RS12705 PF01032 FecCD transport family YPK_RS12710 PF01032 FecCD transport family YPK_RS12715 PF00005 ABC transporter YPK_RS12720 PF04183 IucA / IucC family YPK_RS12720 PF06276 Ferric iron reductase FhuF-like transporter YPK_RS12730 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) YPK_RS12735 PF00282 Pyridoxal-dependent decarboxylase conserved domain YPK_RS12740 PF06276 Ferric iron reductase FhuF-like transporter YPK_RS12740 PF11575 FhuF 2Fe-2S C-terminal domain YPK_RS12745 PF00571 CBS domain YPK_RS12745 PF03741 Integral membrane protein TerC family YPK_RS12745 PF03471 Transporter associated domain YPK_RS12750 PF05170 AsmA family YPK_RS12755 PF00692 dUTPase YPK_RS12760 PF00485 Phosphoribulokinase / Uridine kinase family YPK_RS12765 PF10609 NUBPL iron-transfer P-loop NTPase YPK_RS12770 PF01588 Putative tRNA binding domain YPK_RS12770 PF09334 tRNA synthetases class I (M) YPK_RS12790 PF07690 Major Facilitator Superfamily YPK_RS12795 PF03788 LrgA family YPK_RS12800 PF04172 LrgB-like family YPK_RS12805 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPK_RS12805 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region YPK_RS12810 PF00390 Malic enzyme, N-terminal domain YPK_RS12810 PF03949 Malic enzyme, NAD binding domain YPK_RS12815 PF02698 DUF218 domain YPK_RS12820 PF02653 Branched-chain amino acid transport system / permease component YPK_RS12825 PF00005 ABC transporter YPK_RS12830 PF13407 Periplasmic binding protein domain YPK_RS12835 PF04235 Protein of unknown function (DUF418) YPK_RS12840 PF01227 GTP cyclohydrolase I YPK_RS12845 PF06779 Uncharacterised MFS-type transporter YbfB YPK_RS12850 PF03466 LysR substrate binding domain YPK_RS12850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS12855 PF00107 Zinc-binding dehydrogenase YPK_RS12855 PF08240 Alcohol dehydrogenase GroES-like domain YPK_RS12860 PF00756 Putative esterase YPK_RS12880 PF13533 Biotin-lipoyl like YPK_RS12885 PF00005 ABC transporter YPK_RS12895 PF00994 Probable molybdopterin binding domain YPK_RS12895 PF03454 MoeA C-terminal region (domain IV) YPK_RS12895 PF03453 MoeA N-terminal region (domain I and II) YPK_RS12900 PF00899 ThiF family YPK_RS12910 PF12848 ABC transporter YPK_RS12910 PF00005 ABC transporter YPK_RS13010 PF00698 Acyl transferase domain YPK_RS13015 PF00550 Phosphopantetheine attachment site YPK_RS13030 PF00378 Enoyl-CoA hydratase/isomerase YPK_RS13040 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YPK_RS13040 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YPK_RS13050 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_RS13050 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_RS13055 PF07977 FabA-like domain YPK_RS13070 PF01565 FAD binding domain YPK_RS13070 PF08031 Berberine and berberine like YPK_RS13075 PF11647 Membrane Localization Domain YPK_RS13080 PF13610 DDE domain YPK_RS13090 PF04358 DsrC like protein YPK_RS13095 PF00708 Acylphosphatase YPK_RS13100 PF17785 PUA-like domain YPK_RS13100 PF10672 S-adenosylmethionine-dependent methyltransferase YPK_RS13105 PF08755 Hemimethylated DNA-binding protein YccV like YPK_RS13110 PF13380 CoA binding domain YPK_RS13115 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) YPK_RS13120 PF02142 MGS-like domain YPK_RS13125 PF13361 UvrD-like helicase C-terminal domain YPK_RS13125 PF00580 UvrD/REP helicase N-terminal domain YPK_RS13125 PF12462 DNA helicase IV / RNA helicase N terminal YPK_RS13130 PF03733 Inner membrane component domain YPK_RS13135 PF12805 FUSC-like inner membrane protein yccS YPK_RS13140 PF04993 TfoX N-terminal domain YPK_RS13140 PF04994 TfoX C-terminal domain YPK_RS13145 PF03846 Cell division inhibitor SulA YPK_RS13150 PF01389 OmpA-like transmembrane domain YPK_RS13150 PF00691 OmpA family YPK_RS13160 PF01797 Transposase IS200 like YPK_RS13165 PF17414 MatP C-terminal ribbon-helix-helix domain YPK_RS13165 PF06303 MatP N-terminal domain YPK_RS13170 PF13654 AAA domain YPK_RS13170 PF05362 Lon protease (S16) C-terminal proteolytic domain YPK_RS13175 PF07977 FabA-like domain YPK_RS13185 PF00109 Beta-ketoacyl synthase, N-terminal domain YPK_RS13185 PF02801 Beta-ketoacyl synthase, C-terminal domain YPK_RS13190 PF04957 Ribosome modulation factor YPK_RS13200 PF03886 ABC-type transport auxiliary lipoprotein component YPK_RS13205 PF02470 MlaD protein YPK_RS13210 PF04403 Paraquat-inducible protein A YPK_RS13215 PF00005 ABC transporter YPK_RS13215 PF16326 ABC transporter C-terminal domain YPK_RS13215 PF12848 ABC transporter YPK_RS13220 PF01170 Putative RNA methylase family UPF0020 YPK_RS13220 PF02926 THUMP domain YPK_RS13220 PF10672 S-adenosylmethionine-dependent methyltransferase YPK_RS13225 PF03476 MOSC N-terminal beta barrel domain YPK_RS13225 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_RS13225 PF03473 MOSC domain YPK_RS13230 PF07126 Cell-division protein ZapC YPK_RS13235 PF01180 Dihydroorotate dehydrogenase YPK_RS13240 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YPK_RS13240 PF11940 Domain of unknown function (DUF3458) Ig-like fold YPK_RS13240 PF01433 Peptidase family M1 domain YPK_RS13245 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YPK_RS13245 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YPK_RS13250 PF01336 OB-fold nucleic acid binding domain YPK_RS13250 PF00152 tRNA synthetases class II (D, K and N) YPK_RS13255 PF00267 Gram-negative porin YPK_RS13260 PF00155 Aminotransferase class I and II YPK_RS13265 PF00753 Metallo-beta-lactamase superfamily YPK_RS13270 PF05951 Bacterial protein of unknown function (DUF882) YPK_RS13275 PF01471 Putative peptidoglycan binding domain YPK_RS13275 PF03734 L,D-transpeptidase catalytic domain YPK_RS13280 PF04310 MukB N-terminal YPK_RS13280 PF16330 MukB hinge domain YPK_RS13285 PF04288 MukE-like family YPK_RS13290 PF03882 MukF winged-helix domain YPK_RS13290 PF17193 MukF C-terminal domain YPK_RS13290 PF17192 MukF middle domain YPK_RS13295 PF13847 Methyltransferase domain YPK_RS13305 PF01636 Phosphotransferase enzyme family YPK_RS13310 PF02348 Cytidylyltransferase YPK_RS13315 PF03966 Trm112p-like protein YPK_RS13320 PF00313 'Cold-shock' DNA-binding domain YPK_RS13330 PF07063 Domain of unknown function (DUF1338) YPK_RS13335 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YPK_RS13340 PF00664 ABC transporter transmembrane region YPK_RS13340 PF00005 ABC transporter YPK_RS13345 PF03772 Competence protein YPK_RS13345 PF00753 Metallo-beta-lactamase superfamily YPK_RS13350 PF00216 Bacterial DNA-binding protein YPK_RS13355 PF00575 S1 RNA binding domain YPK_RS13360 PF02224 Cytidylate kinase YPK_RS13365 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YPK_RS13370 PF00266 Aminotransferase class-V YPK_RS13385 PF17763 Glutaminase/Asparaginase C-terminal domain YPK_RS13385 PF00710 Asparaginase, N-terminal YPK_RS13390 PF18381 YcaO cyclodehydratase C-terminal domain YPK_RS13390 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding YPK_RS13395 PF01226 Formate/nitrite transporter YPK_RS13400 PF01228 Glycine radical YPK_RS13400 PF02901 Pyruvate formate lyase-like YPK_RS13410 PF04055 Radical SAM superfamily YPK_RS13415 PF07690 Major Facilitator Superfamily YPK_RS13420 PF02403 Seryl-tRNA synthetase N-terminal domain YPK_RS13420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YPK_RS13425 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS13425 PF16193 AAA C-terminal domain YPK_RS13425 PF12002 MgsA AAA+ ATPase C terminal YPK_RS13430 PF03548 Outer membrane lipoprotein carrier protein LolA YPK_RS13435 PF09397 Ftsk gamma domain YPK_RS13435 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YPK_RS13435 PF17854 FtsK alpha domain YPK_RS13435 PF01580 FtsK/SpoIIIE family YPK_RS13440 PF01037 Lrp/AsnC ligand binding domain YPK_RS13445 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS13455 PF00664 ABC transporter transmembrane region YPK_RS13455 PF00005 ABC transporter YPK_RS13460 PF00005 ABC transporter YPK_RS13460 PF00664 ABC transporter transmembrane region YPK_RS13465 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YPK_RS13470 PF01176 Translation initiation factor 1A / IF-1 YPK_RS13475 PF07724 AAA domain (Cdc48 subfamily) YPK_RS13475 PF17871 AAA lid domain YPK_RS13475 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_RS13475 PF02861 Clp amino terminal domain, pathogenicity island component YPK_RS13475 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS13480 PF02617 ATP-dependent Clp protease adaptor protein ClpS YPK_RS13485 PF00313 'Cold-shock' DNA-binding domain YPK_RS13490 PF00005 ABC transporter YPK_RS13490 PF12704 MacB-like periplasmic core domain YPK_RS13490 PF02687 FtsX-like permease family YPK_RS13495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS13500 PF04393 Protein of unknown function (DUF535) YPK_RS13505 PF11398 Protein of unknown function (DUF2813) YPK_RS13510 PF03956 Lysine exporter LysO YPK_RS13515 PF03063 Prismane/CO dehydrogenase family YPK_RS13520 PF00970 Oxidoreductase FAD-binding domain YPK_RS13520 PF00175 Oxidoreductase NAD-binding domain YPK_RS13520 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_RS13525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_RS13525 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_RS13525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_RS13530 PF01212 Beta-eliminating lyase YPK_RS13535 PF13460 NAD(P)H-binding YPK_RS13535 PF11066 Protein of unknown function (DUF2867) YPK_RS13540 PF01370 NAD dependent epimerase/dehydratase family YPK_RS13545 PF12883 Protein of unknown function (DUF3828) YPK_RS13550 PF01817 Chorismate mutase type II YPK_RS13555 PF00005 ABC transporter YPK_RS13560 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS13565 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS13570 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS13580 PF00892 EamA-like transporter family YPK_RS13585 PF10100 Staphylopine dehydrogenase YPK_RS13590 PF03059 Nicotianamine synthase protein YPK_RS13595 PF00005 ABC transporter YPK_RS13600 PF01032 FecCD transport family YPK_RS13625 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS13630 PF05958 tRNA (Uracil-5-)-methyltransferase YPK_RS13635 PF10767 Protein of unknown function (DUF2593) YPK_RS13640 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS13645 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS13650 PF08402 TOBE domain YPK_RS13650 PF00005 ABC transporter YPK_RS13655 PF13416 Bacterial extracellular solute-binding protein YPK_RS13660 PF10722 Putative bacterial sensory transduction regulator YPK_RS13670 PF07214 Protein of unknown function (DUF1418) YPK_RS13675 PF00462 Glutaredoxin YPK_RS13680 PF06826 Predicted Permease Membrane Region YPK_RS13680 PF02080 TrkA-C domain YPK_RS13690 PF01569 PAP2 superfamily YPK_RS13695 PF01791 DeoC/LacD family aldolase YPK_RS13700 PF00455 DeoR C terminal sensor domain YPK_RS13700 PF08220 DeoR-like helix-turn-helix domain YPK_RS13715 PF00768 D-alanyl-D-alanine carboxypeptidase YPK_RS13715 PF07943 Penicillin-binding protein 5, C-terminal domain YPK_RS13720 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS13725 PF09383 NIL domain YPK_RS13725 PF00005 ABC transporter YPK_RS13730 PF03180 NLPA lipoprotein YPK_RS13745 PF00043 Glutathione S-transferase, C-terminal domain YPK_RS13745 PF13417 Glutathione S-transferase, N-terminal domain YPK_RS13750 PF00593 TonB dependent receptor YPK_RS13750 PF07715 TonB-dependent Receptor Plug Domain YPK_RS13755 PF00005 ABC transporter YPK_RS13760 PF01032 FecCD transport family YPK_RS13770 PF00324 Amino acid permease YPK_RS13775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS13775 PF03466 LysR substrate binding domain YPK_RS13780 PF03601 Conserved hypothetical protein 698 YPK_RS13785 PF01261 Xylose isomerase-like TIM barrel YPK_RS13790 PF13953 PapC C-terminal domain YPK_RS13790 PF13954 PapC N-terminal domain YPK_RS13790 PF00577 Outer membrane usher protein YPK_RS13795 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS13795 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS13805 PF17550 Family of unknown function YPK_RS13810 PF00486 Transcriptional regulatory protein, C terminal YPK_RS13815 PF02378 Phosphotransferase system, EIIC YPK_RS13815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_RS13820 PF00294 pfkB family carbohydrate kinase YPK_RS13825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_RS13825 PF00381 PTS HPr component phosphorylation site YPK_RS13830 PF00293 NUDIX domain YPK_RS13835 PF02653 Branched-chain amino acid transport system / permease component YPK_RS13840 PF00005 ABC transporter YPK_RS13850 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YPK_RS13855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS13855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_RS13860 PF00171 Aldehyde dehydrogenase family YPK_RS13870 PF01842 ACT domain YPK_RS13870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YPK_RS13870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YPK_RS13880 PF03692 Putative zinc- or iron-chelating domain YPK_RS13885 PF03222 Tryptophan/tyrosine permease family YPK_RS13890 PF01132 Elongation factor P (EF-P) OB domain YPK_RS13890 PF08207 Elongation factor P (EF-P) KOW-like domain YPK_RS13890 PF09285 Elongation factor P, C-terminal YPK_RS13895 PF03786 D-mannonate dehydratase (UxuA) YPK_RS13900 PF01232 Mannitol dehydrogenase Rossmann domain YPK_RS13900 PF08125 Mannitol dehydrogenase C-terminal domain YPK_RS13905 PF00392 Bacterial regulatory proteins, gntR family YPK_RS13905 PF07729 FCD domain YPK_RS13915 PF02492 CobW/HypB/UreG, nucleotide-binding domain YPK_RS13915 PF07683 Cobalamin synthesis protein cobW C-terminal domain YPK_RS13920 PF01569 PAP2 superfamily YPK_RS13925 PF00877 NlpC/P60 family YPK_RS13930 PF00563 EAL domain YPK_RS13930 PF12792 CSS motif domain associated with EAL YPK_RS13935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_RS13940 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS13945 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_RS13945 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS13950 PF00005 ABC transporter YPK_RS13950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_RS13955 PF13989 YejG-like protein YPK_RS13960 PF07690 Major Facilitator Superfamily YPK_RS13965 PF00849 RNA pseudouridylate synthase YPK_RS13965 PF01479 S4 domain YPK_RS13970 PF00271 Helicase conserved C-terminal domain YPK_RS13970 PF04851 Type III restriction enzyme, res subunit YPK_RS13975 PF01386 Ribosomal L25p family YPK_RS13980 PF04245 37-kD nucleoid-associated bacterial protein YPK_RS13985 PF07208 Protein of unknown function (DUF1414) YPK_RS13990 PF11893 Domain of unknown function (DUF3413) YPK_RS13990 PF00884 Sulfatase YPK_RS14005 PF05638 Type VI secretion system effector, Hcp YPK_RS14030 PF00232 Glycosyl hydrolase family 1 YPK_RS14035 PF01380 SIS domain YPK_RS14035 PF01418 Helix-turn-helix domain, rpiR family YPK_RS14060 PF04865 Baseplate J-like protein YPK_RS14100 PF04984 Phage tail sheath protein subtilisin-like domain YPK_RS14100 PF17482 Phage tail sheath C-terminal domain YPK_RS14120 PF01261 Xylose isomerase-like TIM barrel YPK_RS14125 PF08220 DeoR-like helix-turn-helix domain YPK_RS14125 PF00455 DeoR C terminal sensor domain YPK_RS14130 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_RS14135 PF07005 Sugar-binding N-terminal domain YPK_RS14135 PF17042 Nucleotide-binding C-terminal domain YPK_RS14140 PF06530 Phage antitermination protein Q YPK_RS14145 PF00717 Peptidase S24-like YPK_RS14145 PF01381 Helix-turn-helix YPK_RS14150 PF06183 DinI-like family YPK_RS14155 PF01278 Omptin family YPK_RS14160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YPK_RS14160 PF00672 HAMP domain YPK_RS14160 PF02743 Cache domain YPK_RS14165 PF12706 Beta-lactamase superfamily domain YPK_RS14180 PF00144 Beta-lactamase YPK_RS14205 PF00267 Gram-negative porin YPK_RS14215 PF07690 Major Facilitator Superfamily YPK_RS14220 PF16359 RcsD-ABL domain YPK_RS14220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS14220 PF01627 Hpt domain YPK_RS14225 PF00072 Response regulator receiver domain YPK_RS14225 PF00196 Bacterial regulatory proteins, luxR family YPK_RS14230 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS14230 PF00072 Response regulator receiver domain YPK_RS14230 PF09456 RcsC Alpha-Beta-Loop (ABL) YPK_RS14230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS14240 PF03989 DNA gyrase C-terminal domain, beta-propeller YPK_RS14240 PF00521 DNA gyrase/topoisomerase IV, subunit A YPK_RS14250 PF00317 Ribonucleotide reductase, all-alpha domain YPK_RS14250 PF02867 Ribonucleotide reductase, barrel domain YPK_RS14250 PF03477 ATP cone domain YPK_RS14255 PF00268 Ribonucleotide reductase, small chain YPK_RS14260 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_RS14265 PF03974 Ecotin YPK_RS14270 PF00994 Probable molybdopterin binding domain YPK_RS14275 PF03222 Tryptophan/tyrosine permease family YPK_RS14280 PF07437 YfaZ precursor YPK_RS14285 PF00199 Catalase YPK_RS14285 PF06628 Catalase-related immune-responsive YPK_RS14290 PF13307 Helicase C-terminal domain YPK_RS14290 PF06733 DEAD_2 YPK_RS14295 PF00267 Gram-negative porin YPK_RS14300 PF00892 EamA-like transporter family YPK_RS14310 PF01276 Orn/Lys/Arg decarboxylase, major domain YPK_RS14310 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YPK_RS14310 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YPK_RS14315 PF13520 Amino acid permease YPK_RS14320 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS14325 PF00005 ABC transporter YPK_RS14330 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS14335 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YPK_RS14340 PF00581 Rhodanese-like domain YPK_RS14355 PF00005 ABC transporter YPK_RS14360 PF00005 ABC transporter YPK_RS14365 PF02653 Branched-chain amino acid transport system / permease component YPK_RS14370 PF02653 Branched-chain amino acid transport system / permease component YPK_RS14375 PF13188 PAS domain YPK_RS14375 PF00158 Sigma-54 interaction domain YPK_RS14375 PF02954 Bacterial regulatory protein, Fis family YPK_RS14380 PF07308 Protein of unknown function (DUF1456) YPK_RS14385 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS14390 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS14400 PF00005 ABC transporter YPK_RS14405 PF04226 Transglycosylase associated protein YPK_RS14415 PF01844 HNH endonuclease YPK_RS14425 PF01565 FAD binding domain YPK_RS14425 PF09330 D-lactate dehydrogenase, membrane binding YPK_RS14430 PF00768 D-alanyl-D-alanine carboxypeptidase YPK_RS14440 PF01207 Dihydrouridine synthase (Dus) YPK_RS14450 PF01797 Transposase IS200 like YPK_RS14460 PF00271 Helicase conserved C-terminal domain YPK_RS14460 PF00270 DEAD/DEAH box helicase YPK_RS14465 PF01548 Transposase YPK_RS14465 PF02371 Transposase IS116/IS110/IS902 family YPK_RS14485 PF13358 DDE superfamily endonuclease YPK_RS14485 PF13592 Winged helix-turn helix YPK_RS14490 PF13592 Winged helix-turn helix YPK_RS14490 PF13358 DDE superfamily endonuclease YPK_RS14495 PF00270 DEAD/DEAH box helicase YPK_RS14495 PF00271 Helicase conserved C-terminal domain YPK_RS14500 PF09209 Tetracyclin repressor-like, C-terminal domain YPK_RS14500 PF00440 Bacterial regulatory proteins, tetR family YPK_RS14505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS14510 PF00005 ABC transporter YPK_RS14535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS14535 PF03466 LysR substrate binding domain YPK_RS14540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YPK_RS14545 PF00072 Response regulator receiver domain YPK_RS14545 PF00158 Sigma-54 interaction domain YPK_RS14545 PF02954 Bacterial regulatory protein, Fis family YPK_RS14550 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS14550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS14555 PF13801 Heavy-metal resistance YPK_RS14560 PF03825 Nucleoside H+ symporter YPK_RS14565 PF01048 Phosphorylase superfamily YPK_RS14575 PF03466 LysR substrate binding domain YPK_RS14575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS14580 PF02028 BCCT, betaine/carnitine/choline family transporter YPK_RS14585 PF13977 BetI-type transcriptional repressor, C-terminal YPK_RS14585 PF00440 Bacterial regulatory proteins, tetR family YPK_RS14590 PF00171 Aldehyde dehydrogenase family YPK_RS14595 PF05199 GMC oxidoreductase YPK_RS14595 PF00732 GMC oxidoreductase YPK_RS14600 PF01027 Inhibitor of apoptosis-promoting Bax1 YPK_RS14605 PF02391 MoaE protein YPK_RS14610 PF02597 ThiS family YPK_RS14615 PF01967 MoaC family YPK_RS14620 PF04055 Radical SAM superfamily YPK_RS14620 PF06463 Molybdenum Cofactor Synthesis C YPK_RS14630 PF01933 Uncharacterised protein family UPF0052 YPK_RS14635 PF09905 DNA-binding protein VF530 YPK_RS14640 PF12344 Ultra-violet resistance protein B YPK_RS14640 PF02151 UvrB/uvrC motif YPK_RS14640 PF04851 Type III restriction enzyme, res subunit YPK_RS14640 PF00271 Helicase conserved C-terminal domain YPK_RS14640 PF17757 UvrB interaction domain YPK_RS14645 PF00005 ABC transporter YPK_RS14645 PF09383 NIL domain YPK_RS14655 PF08241 Methyltransferase domain YPK_RS14660 PF00155 Aminotransferase class I and II YPK_RS14665 PF06968 Biotin and Thiamin Synthesis associated domain YPK_RS14665 PF04055 Radical SAM superfamily YPK_RS14670 PF00202 Aminotransferase class-III YPK_RS14675 PF10282 Lactonase, 7-bladed beta-propeller YPK_RS14685 PF00005 ABC transporter YPK_RS14685 PF03459 TOBE domain YPK_RS14690 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS14700 PF10766 Multidrug efflux pump-associated protein AcrZ YPK_RS14705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS14705 PF03459 TOBE domain YPK_RS14710 PF00005 ABC transporter YPK_RS14725 PF16363 GDP-mannose 4,6 dehydratase YPK_RS14730 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YPK_RS14730 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YPK_RS14735 PF08544 GHMP kinases C terminal YPK_RS14735 PF00288 GHMP kinases N terminal domain YPK_RS14735 PF10509 Galactokinase galactose-binding signature YPK_RS14740 PF01263 Aldose 1-epimerase YPK_RS14750 PF00300 Histidine phosphatase superfamily (branch 1) YPK_RS14755 PF00793 DAHP synthetase I family YPK_RS14760 PF01545 Cation efflux family YPK_RS14765 PF04973 Nicotinamide mononucleotide transporter YPK_RS14770 PF02445 Quinolinate synthetase A protein YPK_RS14800 PF13174 Tetratricopeptide repeat YPK_RS14800 PF16331 TolA binding protein trimerisation YPK_RS14805 PF00691 OmpA family YPK_RS14810 PF07676 WD40-like Beta Propeller Repeat YPK_RS14810 PF04052 TolB amino-terminal domain YPK_RS14815 PF06519 TolA C-terminal YPK_RS14815 PF06519 TolA C-terminal YPK_RS14820 PF02472 Biopolymer transport protein ExbD/TolR YPK_RS14825 PF01618 MotA/TolQ/ExbB proton channel family YPK_RS14830 PF03061 Thioesterase superfamily YPK_RS14835 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) YPK_RS14840 PF08173 Membrane bound YbgT-like protein YPK_RS14845 PF02322 Cytochrome bd terminal oxidase subunit II YPK_RS14850 PF01654 Cytochrome bd terminal oxidase subunit I YPK_RS14855 PF00549 CoA-ligase YPK_RS14855 PF02629 CoA binding domain YPK_RS14860 PF00549 CoA-ligase YPK_RS14860 PF08442 ATP-grasp domain YPK_RS14865 PF00364 Biotin-requiring enzyme YPK_RS14865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPK_RS14865 PF02817 e3 binding domain YPK_RS14870 PF00676 Dehydrogenase E1 component YPK_RS14870 PF16870 2-oxoglutarate dehydrogenase C-terminal YPK_RS14870 PF16078 2-oxoglutarate dehydrogenase N-terminus YPK_RS14870 PF02779 Transketolase, pyrimidine binding domain YPK_RS14875 PF13085 2Fe-2S iron-sulfur cluster binding domain YPK_RS14880 PF02910 Fumarate reductase flavoprotein C-term YPK_RS14880 PF00890 FAD binding domain YPK_RS14885 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPK_RS14890 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YPK_RS14895 PF00285 Citrate synthase, C-terminal domain YPK_RS14900 PF01025 GrpE YPK_RS14905 PF01513 ATP-NAD kinase YPK_RS14910 PF02463 RecF/RecN/SMC N terminal domain YPK_RS14915 PF04355 SmpA / OmlA family YPK_RS14920 PF03658 RnfH family Ubiquitin YPK_RS14925 PF03364 Polyketide cyclase / dehydrase and lipid transport YPK_RS14930 PF01668 SmpB protein YPK_RS14935 PF13356 Arm DNA-binding domain YPK_RS14935 PF00589 Phage integrase family YPK_RS14940 PF01527 Transposase YPK_RS14945 PF13356 Arm DNA-binding domain YPK_RS14945 PF00589 Phage integrase family YPK_RS14955 PF12697 Alpha/beta hydrolase family YPK_RS14965 PF01402 Ribbon-helix-helix protein, copG family YPK_RS14970 PF00258 Flavodoxin YPK_RS14975 PF01475 Ferric uptake regulator family YPK_RS14980 PF02838 Glycosyl hydrolase family 20, domain 2 YPK_RS14980 PF03173 Putative carbohydrate binding domain YPK_RS14980 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain YPK_RS14980 PF00728 Glycosyl hydrolase family 20, catalytic domain YPK_RS14985 PF03573 outer membrane porin, OprD family YPK_RS14990 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YPK_RS14990 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPK_RS14995 PF01797 Transposase IS200 like YPK_RS15000 PF00367 phosphotransferase system, EIIB YPK_RS15000 PF02378 Phosphotransferase system, EIIC YPK_RS15000 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YPK_RS15005 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YPK_RS15010 PF01979 Amidohydrolase family YPK_RS15015 PF01047 MarR family YPK_RS15015 PF00480 ROK family YPK_RS15020 PF13344 Haloacid dehalogenase-like hydrolase YPK_RS15025 PF13537 Glutamine amidotransferase domain YPK_RS15025 PF00733 Asparagine synthase YPK_RS15065 PF01494 FAD binding domain YPK_RS15070 PF00919 Uncharacterized protein family UPF0004 YPK_RS15070 PF01938 TRAM domain YPK_RS15070 PF04055 Radical SAM superfamily YPK_RS15075 PF02562 PhoH-like protein YPK_RS15080 PF02130 Uncharacterized protein family UPF0054 YPK_RS15085 PF03471 Transporter associated domain YPK_RS15085 PF00571 CBS domain YPK_RS15090 PF00795 Carbon-nitrogen hydrolase YPK_RS15095 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS15100 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS15105 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS15110 PF00005 ABC transporter YPK_RS15115 PF07295 Zinc-ribbon containing domain YPK_RS15120 PF00133 tRNA synthetases class I (I, L, M and V) YPK_RS15120 PF08264 Anticodon-binding domain of tRNA YPK_RS15120 PF13603 Leucyl-tRNA synthetase, Domain 2 YPK_RS15125 PF04390 Lipopolysaccharide-assembly YPK_RS15130 PF06144 DNA polymerase III, delta subunit YPK_RS15130 PF14840 Processivity clamp loader gamma complex DNA pol III C-term YPK_RS15135 PF01467 Cytidylyltransferase-like YPK_RS15145 PF02590 Predicted SPOUT methyltransferase YPK_RS15150 PF00905 Penicillin binding protein transpeptidase domain YPK_RS15150 PF03717 Penicillin-binding Protein dimerisation domain YPK_RS15155 PF01098 Cell cycle protein YPK_RS15160 PF05036 Sporulation related domain YPK_RS15160 PF03330 Lytic transglycolase YPK_RS15165 PF00768 D-alanyl-D-alanine carboxypeptidase YPK_RS15165 PF07943 Penicillin-binding protein 5, C-terminal domain YPK_RS15170 PF04359 Protein of unknown function (DUF493) YPK_RS15175 PF03099 Biotin/lipoate A/B protein ligase family YPK_RS15180 PF04055 Radical SAM superfamily YPK_RS15180 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YPK_RS15185 PF02416 mttA/Hcf106 family YPK_RS15195 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YPK_RS15200 PF00313 'Cold-shock' DNA-binding domain YPK_RS15205 PF00313 'Cold-shock' DNA-binding domain YPK_RS15210 PF00196 Bacterial regulatory proteins, luxR family YPK_RS15235 PF00664 ABC transporter transmembrane region YPK_RS15235 PF00005 ABC transporter YPK_RS15245 PF04962 KduI/IolB family YPK_RS15250 PF01261 Xylose isomerase-like TIM barrel YPK_RS15255 PF00294 pfkB family carbohydrate kinase YPK_RS15260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_RS15260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_RS15265 PF02653 Branched-chain amino acid transport system / permease component YPK_RS15270 PF00005 ABC transporter YPK_RS15275 PF13407 Periplasmic binding protein domain YPK_RS15280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YPK_RS15280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YPK_RS15285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_RS15285 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_RS15285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_RS15290 PF00171 Aldehyde dehydrogenase family YPK_RS15300 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain YPK_RS15300 PF17962 Bacterial macroglobulin domain 6 YPK_RS15300 PF01835 MG2 domain YPK_RS15300 PF00207 Alpha-2-macroglobulin family YPK_RS15300 PF07703 Alpha-2-macroglobulin bait region domain YPK_RS15300 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain YPK_RS15300 PF11974 Bacterial alpha-2-macroglobulin MG3 domain YPK_RS15305 PF00912 Transglycosylase YPK_RS15305 PF00905 Penicillin binding protein transpeptidase domain YPK_RS15305 PF06832 Penicillin-Binding Protein C-terminus Family YPK_RS15310 PF13693 Winged helix-turn-helix DNA-binding YPK_RS15330 PF05638 Type VI secretion system effector, Hcp YPK_RS15345 PF03212 Pertactin YPK_RS15345 PF16168 Adhesin of bacterial autotransporter system, probable stalk YPK_RS15345 PF03797 Autotransporter beta-domain YPK_RS15345 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS15355 PF08007 Cupin superfamily protein YPK_RS15365 PF00872 Transposase, Mutator family YPK_RS15370 PF01479 S4 domain YPK_RS15370 PF00849 RNA pseudouridylate synthase YPK_RS15385 PF01915 Glycosyl hydrolase family 3 C-terminal domain YPK_RS15385 PF14310 Fibronectin type III-like domain YPK_RS15385 PF00933 Glycosyl hydrolase family 3 N terminal domain YPK_RS15405 PF00248 Aldo/keto reductase family YPK_RS15410 PF00248 Aldo/keto reductase family YPK_RS15415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS15415 PF03466 LysR substrate binding domain YPK_RS15430 PF00782 Dual specificity phosphatase, catalytic domain YPK_RS15435 PF12146 Serine aminopeptidase, S33 YPK_RS15435 PF12147 Putative methyltransferase YPK_RS15440 PF01553 Acyltransferase YPK_RS15450 PF01066 CDP-alcohol phosphatidyltransferase YPK_RS15485 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPK_RS15570 PF06183 DinI-like family YPK_RS15575 PF06183 DinI-like family YPK_RS15580 PF02413 Caudovirales tail fibre assembly protein, lambda gpK YPK_RS15650 PF04984 Phage tail sheath protein subtilisin-like domain YPK_RS15650 PF17482 Phage tail sheath C-terminal domain YPK_RS15680 PF00589 Phage integrase family YPK_RS15695 PF06755 CbtA_toxin of type IV toxin-antitoxin system YPK_RS15700 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A YPK_RS15705 PF04002 RadC-like JAB domain YPK_RS15710 PF06067 Domain of unknown function (DUF932) YPK_RS15725 PF01926 50S ribosome-binding GTPase YPK_RS15750 PF13676 TIR domain YPK_RS15780 PF13356 Arm DNA-binding domain YPK_RS15780 PF14659 Phage integrase, N-terminal SAM-like domain YPK_RS15780 PF00589 Phage integrase family YPK_RS15790 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YPK_RS15790 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YPK_RS15800 PF01406 tRNA synthetases class I (C) catalytic domain YPK_RS15800 PF09190 DALR domain YPK_RS15805 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YPK_RS15810 PF00149 Calcineurin-like phosphoesterase YPK_RS15815 PF00731 AIR carboxylase YPK_RS15820 PF02222 ATP-grasp domain YPK_RS15820 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YPK_RS15830 PF00005 ABC transporter YPK_RS15835 PF13472 GDSL-like Lipase/Acylhydrolase family YPK_RS15840 PF00106 short chain dehydrogenase YPK_RS15845 PF00085 Thioredoxin YPK_RS15850 PF16200 C-terminal region of band_7 YPK_RS15850 PF01145 SPFH domain / Band 7 family YPK_RS15855 PF01957 NfeD-like C-terminal, partner-binding YPK_RS15860 PF13411 MerR HTH family regulatory protein YPK_RS15865 PF00403 Heavy-metal-associated domain YPK_RS15870 PF01963 TraB family YPK_RS15875 PF04073 Aminoacyl-tRNA editing domain YPK_RS15895 PF07690 Major Facilitator Superfamily YPK_RS15900 PF01797 Transposase IS200 like YPK_RS15905 PF07690 Major Facilitator Superfamily YPK_RS15910 PF00999 Sodium/hydrogen exchanger family YPK_RS15910 PF02254 TrkA-N domain YPK_RS15915 PF00294 pfkB family carbohydrate kinase YPK_RS15920 PF02706 Chain length determinant protein YPK_RS15925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPK_RS15925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPK_RS15925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPK_RS15925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPK_RS15930 PF01370 NAD dependent epimerase/dehydratase family YPK_RS15935 PF00535 Glycosyl transferase family 2 YPK_RS15940 PF00483 Nucleotidyl transferase YPK_RS15940 PF01050 Mannose-6-phosphate isomerase YPK_RS15945 PF01370 NAD dependent epimerase/dehydratase family YPK_RS15950 PF16363 GDP-mannose 4,6 dehydratase YPK_RS15955 PF13439 Glycosyltransferase Family 4 YPK_RS15955 PF00534 Glycosyl transferases group 1 YPK_RS15975 PF01370 NAD dependent epimerase/dehydratase family YPK_RS15980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPK_RS15985 PF16363 GDP-mannose 4,6 dehydratase YPK_RS15990 PF00483 Nucleotidyl transferase YPK_RS15995 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_RS15995 PF00175 Oxidoreductase NAD-binding domain YPK_RS15995 PF00970 Oxidoreductase FAD-binding domain YPK_RS16000 PF00762 Ferrochelatase YPK_RS16005 PF05191 Adenylate kinase, active site lid YPK_RS16010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS16010 PF00183 Hsp90 protein YPK_RS16015 PF02132 RecR protein YPK_RS16015 PF13662 Toprim domain YPK_RS16020 PF02575 YbaB/EbfC DNA-binding family YPK_RS16025 PF12170 DNA polymerase III tau subunit V interacting with alpha YPK_RS16025 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YPK_RS16025 PF12169 DNA polymerase III subunits gamma and tau domain III YPK_RS16030 PF00156 Phosphoribosyl transferase domain YPK_RS16045 PF10689 Protein of unknown function (DUF2496) YPK_RS16050 PF00924 Mechanosensitive ion channel YPK_RS16050 PF12795 Mechanosensitive ion channel porin domain YPK_RS16050 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPK_RS16055 PF02635 DsrE/DsrF-like family YPK_RS16060 PF00440 Bacterial regulatory proteins, tetR family YPK_RS16060 PF08361 MAATS-type transcriptional repressor, C-terminal region YPK_RS16065 PF00529 HlyD membrane-fusion protein of T1SS YPK_RS16065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS16070 PF00873 AcrB/AcrD/AcrF family YPK_RS16075 PF01797 Transposase IS200 like YPK_RS16080 PF01197 Ribosomal protein L31 YPK_RS16085 PF00444 Ribosomal protein L36 YPK_RS16095 PF10757 Biofilm formation regulator YbaJ YPK_RS16100 PF05321 Haemolysin expression modulating protein YPK_RS16105 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPK_RS16110 PF09619 Type III secretion system lipoprotein chaperone (YscW) YPK_RS16120 PF00909 Ammonium Transporter Family YPK_RS16125 PF00543 Nitrogen regulatory protein P-II YPK_RS16130 PF00005 ABC transporter YPK_RS16130 PF00664 ABC transporter transmembrane region YPK_RS16135 PF00664 ABC transporter transmembrane region YPK_RS16135 PF00005 ABC transporter YPK_RS16140 PF13404 AsnC-type helix-turn-helix domain YPK_RS16140 PF01037 Lrp/AsnC ligand binding domain YPK_RS16145 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS16155 PF12793 Sugar transport-related sRNA regulator N-term YPK_RS16155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_RS16160 PF06508 Queuosine biosynthesis protein QueC YPK_RS16175 PF13145 PPIC-type PPIASE domain YPK_RS16180 PF00216 Bacterial DNA-binding protein YPK_RS16185 PF02190 ATP-dependent protease La (LON) substrate-binding domain YPK_RS16185 PF05362 Lon protease (S16) C-terminal proteolytic domain YPK_RS16185 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS16190 PF06689 ClpX C4-type zinc finger YPK_RS16190 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_RS16190 PF07724 AAA domain (Cdc48 subfamily) YPK_RS16195 PF00574 Clp protease YPK_RS16200 PF05697 Bacterial trigger factor protein (TF) YPK_RS16200 PF05698 Bacterial trigger factor protein (TF) C-terminus YPK_RS16200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_RS16210 PF01722 BolA-like protein YPK_RS16215 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPK_RS16215 PF03923 Uncharacterized lipoprotein YPK_RS16220 PF07690 Major Facilitator Superfamily YPK_RS16230 PF06481 COX Aromatic Rich Motif YPK_RS16230 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YPK_RS16235 PF00115 Cytochrome C and Quinol oxidase polypeptide I YPK_RS16240 PF00510 Cytochrome c oxidase subunit III YPK_RS16245 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YPK_RS16250 PF01040 UbiA prenyltransferase family YPK_RS16255 PF07690 Major Facilitator Superfamily YPK_RS16260 PF04461 Protein of unknown function (DUF520) YPK_RS16265 PF02558 Ketopantoate reductase PanE/ApbA YPK_RS16265 PF08546 Ketopantoate reductase PanE/ApbA C terminal YPK_RS16270 PF01965 DJ-1/PfpI family YPK_RS16275 PF02926 THUMP domain YPK_RS16275 PF02568 Thiamine biosynthesis protein (ThiI) YPK_RS16285 PF02609 Exonuclease VII small subunit YPK_RS16290 PF00348 Polyprenyl synthetase YPK_RS16295 PF02779 Transketolase, pyrimidine binding domain YPK_RS16295 PF02780 Transketolase, C-terminal domain YPK_RS16295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YPK_RS16300 PF04608 Phosphatidylglycerophosphatase A YPK_RS16305 PF02769 AIR synthase related protein, C-terminal domain YPK_RS16305 PF00586 AIR synthase related protein, N-terminal domain YPK_RS16310 PF01029 NusB family YPK_RS16315 PF00885 6,7-dimethyl-8-ribityllumazine synthase YPK_RS16320 PF01872 RibD C-terminal domain YPK_RS16320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YPK_RS16325 PF03477 ATP cone domain YPK_RS16340 PF02355 Protein export membrane protein YPK_RS16340 PF07549 SecD/SecF GG Motif YPK_RS16345 PF07549 SecD/SecF GG Motif YPK_RS16345 PF02355 Protein export membrane protein YPK_RS16345 PF13721 SecD export protein N-terminal TM region YPK_RS16350 PF02699 Preprotein translocase subunit YPK_RS16355 PF01702 Queuine tRNA-ribosyltransferase YPK_RS16360 PF02547 Queuosine biosynthesis protein YPK_RS16365 PF04336 Acyl carrier protein phosphodiesterase YPK_RS16370 PF10417 C-terminal domain of 1-Cys peroxiredoxin YPK_RS16370 PF00578 AhpC/TSA family YPK_RS16385 PF00106 short chain dehydrogenase YPK_RS16390 PF00128 Alpha amylase, catalytic domain YPK_RS16390 PF02903 Alpha amylase, N-terminal ig-like domain YPK_RS16395 PF00324 Amino acid permease YPK_RS16400 PF05525 Branched-chain amino acid transport protein YPK_RS16405 PF12849 PBP superfamily domain YPK_RS16410 PF00989 PAS fold YPK_RS16410 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS16410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS16410 PF11808 Phosphate regulon sensor protein PhoR YPK_RS16415 PF00486 Transcriptional regulatory protein, C terminal YPK_RS16415 PF00072 Response regulator receiver domain YPK_RS16425 PF12320 Type 5 capsule protein repressor C-terminal domain YPK_RS16425 PF00149 Calcineurin-like phosphoesterase YPK_RS16430 PF13476 AAA domain YPK_RS16435 PF00480 ROK family YPK_RS16440 PF04381 Putative exonuclease, RdgC YPK_RS16445 PF06865 Pyrimidine/purine nucleoside phosphorylase YPK_RS16455 PF01202 Shikimate kinase YPK_RS16470 PF08241 Methyltransferase domain YPK_RS16480 PF07238 PilZ domain YPK_RS16480 PF07317 Flagellar regulator YcgR YPK_RS16485 PF00171 Aldehyde dehydrogenase family YPK_RS16490 PF00696 Amino acid kinase family YPK_RS16490 PF01472 PUA domain YPK_RS16495 PF07417 Sigma factor-binding transcriptional regulator Crl YPK_RS16500 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) YPK_RS16505 PF00156 Phosphoribosyl transferase domain YPK_RS16530 PF01546 Peptidase family M20/M25/M40 YPK_RS16530 PF07687 Peptidase dimerisation domain YPK_RS16535 PF11798 IMS family HHH motif YPK_RS16535 PF00817 impB/mucB/samB family YPK_RS16535 PF11799 impB/mucB/samB family C-terminal domain YPK_RS16540 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_RS16550 PF02424 ApbE family YPK_RS16555 PF00111 2Fe-2S iron-sulfur cluster binding domain YPK_RS16555 PF00175 Oxidoreductase NAD-binding domain YPK_RS16555 PF00970 Oxidoreductase FAD-binding domain YPK_RS16560 PF02508 Rnf-Nqr subunit, membrane protein YPK_RS16565 PF02508 Rnf-Nqr subunit, membrane protein YPK_RS16570 PF04205 FMN-binding domain YPK_RS16575 PF03116 NQR2, RnfD, RnfE family YPK_RS16580 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YPK_RS16580 PF11973 NQRA C-terminal domain YPK_RS16585 PF03734 L,D-transpeptidase catalytic domain YPK_RS16590 PF13230 Glutamine amidotransferases class-II YPK_RS16595 PF13580 SIS domain YPK_RS16600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YPK_RS16600 PF09317 Domain of unknown function (DUF1974) YPK_RS16600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPK_RS16610 PF18071 HMW1C N-terminal YPK_RS16610 PF18254 HMW1 domain 2 YPK_RS16615 PF05860 haemagglutination activity domain YPK_RS16620 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB YPK_RS16620 PF08479 POTRA domain, ShlB-type YPK_RS16630 PF01797 Transposase IS200 like YPK_RS16635 PF01636 Phosphotransferase enzyme family YPK_RS16640 PF01008 Initiation factor 2 subunit family YPK_RS16645 PF03079 ARD/ARD' family YPK_RS16655 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_RS16660 PF00155 Aminotransferase class I and II YPK_RS16665 PF00795 Carbon-nitrogen hydrolase YPK_RS16670 PF01546 Peptidase family M20/M25/M40 YPK_RS16670 PF07687 Peptidase dimerisation domain YPK_RS16675 PF00266 Aminotransferase class-V YPK_RS16680 PF00005 ABC transporter YPK_RS16685 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS16690 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS16695 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS16715 PF01425 Amidase YPK_RS16725 PF07690 Major Facilitator Superfamily YPK_RS16730 PF03591 AzlC protein YPK_RS16735 PF05437 Branched-chain amino acid transport protein (AzlD) YPK_RS16740 PF01047 MarR family YPK_RS16745 PF00529 HlyD membrane-fusion protein of T1SS YPK_RS16745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS16750 PF07690 Major Facilitator Superfamily YPK_RS16755 PF00588 SpoU rRNA Methylase family YPK_RS16755 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPK_RS16760 PF00085 Thioredoxin YPK_RS16770 PF00583 Acetyltransferase (GNAT) family YPK_RS16770 PF13380 CoA binding domain YPK_RS16770 PF13607 Succinyl-CoA ligase like flavodoxin domain YPK_RS16775 PF13091 PLD-like domain YPK_RS16780 PF10043 Predicted periplasmic lipoprotein (DUF2279) YPK_RS16820 PF17871 AAA lid domain YPK_RS16820 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_RS16820 PF07724 AAA domain (Cdc48 subfamily) YPK_RS16820 PF02861 Clp amino terminal domain, pathogenicity island component YPK_RS16820 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS16825 PF02578 Multi-copper polyphenol oxidoreductase laccase YPK_RS16830 PF01479 S4 domain YPK_RS16830 PF00849 RNA pseudouridylate synthase YPK_RS16835 PF13525 Outer membrane lipoprotein YPK_RS16840 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YPK_RS16845 PF00800 Prephenate dehydratase YPK_RS16845 PF01817 Chorismate mutase type II YPK_RS16850 PF02153 Prephenate dehydrogenase YPK_RS16850 PF01817 Chorismate mutase type II YPK_RS16855 PF00793 DAHP synthetase I family YPK_RS16860 PF04397 LytTr DNA-binding domain YPK_RS16860 PF00072 Response regulator receiver domain YPK_RS16865 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPK_RS16870 PF04338 Protein of unknown function, DUF481 YPK_RS16875 PF01245 Ribosomal protein L19 YPK_RS16880 PF01746 tRNA (Guanine-1)-methyltransferase YPK_RS16885 PF01782 RimM N-terminal domain YPK_RS16885 PF05239 PRC-barrel domain YPK_RS16890 PF00886 Ribosomal protein S16 YPK_RS16895 PF00448 SRP54-type protein, GTPase domain YPK_RS16895 PF02881 SRP54-type protein, helical bundle domain YPK_RS16895 PF02978 Signal peptide binding domain YPK_RS16900 PF01578 Cytochrome C assembly protein YPK_RS16905 PF03471 Transporter associated domain YPK_RS16905 PF00571 CBS domain YPK_RS16905 PF01595 Cyclin M transmembrane N-terminal domain YPK_RS16910 PF02664 S-Ribosylhomocysteinase (LuxS) YPK_RS16915 PF04262 Glutamate-cysteine ligase YPK_RS16920 PF09335 SNARE associated Golgi protein YPK_RS16925 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS16950 PF02599 Global regulator protein family YPK_RS16955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YPK_RS16955 PF01411 tRNA synthetases class II (A) YPK_RS16955 PF02272 DHHA1 domain YPK_RS16960 PF02631 RecX family YPK_RS16965 PF00154 recA bacterial DNA recombination protein YPK_RS16970 PF02464 Competence-damaged protein YPK_RS16975 PF07690 Major Facilitator Superfamily YPK_RS16990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS16990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_RS16995 PF02779 Transketolase, pyrimidine binding domain YPK_RS16995 PF02780 Transketolase, C-terminal domain YPK_RS17000 PF00456 Transketolase, thiamine diphosphate binding domain YPK_RS17005 PF02653 Branched-chain amino acid transport system / permease component YPK_RS17010 PF00005 ABC transporter YPK_RS17020 PF13407 Periplasmic binding protein domain YPK_RS17025 PF00141 Peroxidase YPK_RS17030 PF07361 Cytochrome b562 YPK_RS17035 PF01292 Prokaryotic cytochrome b561 YPK_RS17040 PF02613 Nitrate reductase delta subunit YPK_RS17045 PF04976 DMSO reductase anchor subunit (DmsC) YPK_RS17050 PF13247 4Fe-4S dicluster domain YPK_RS17050 PF12800 4Fe-4S binding domain YPK_RS17055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_RS17055 PF01568 Molydopterin dinucleotide binding domain YPK_RS17055 PF00384 Molybdopterin oxidoreductase YPK_RS17060 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_RS17065 PF00455 DeoR C terminal sensor domain YPK_RS17065 PF08220 DeoR-like helix-turn-helix domain YPK_RS17075 PF00005 ABC transporter YPK_RS17080 PF02653 Branched-chain amino acid transport system / permease component YPK_RS17085 PF02653 Branched-chain amino acid transport system / permease component YPK_RS17090 PF01261 Xylose isomerase-like TIM barrel YPK_RS17095 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_RS17095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS17100 PF05683 Fumarase C-terminus YPK_RS17100 PF05681 Fumarate hydratase (Fumerase) YPK_RS17110 PF00557 Metallopeptidase family M24 YPK_RS17125 PF07715 TonB-dependent Receptor Plug Domain YPK_RS17125 PF00593 TonB dependent receptor YPK_RS17135 PF03150 Di-haem cytochrome c peroxidase YPK_RS17135 PF00034 Cytochrome c YPK_RS17135 PF14376 Haem-binding domain YPK_RS17140 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS17155 PF01022 Bacterial regulatory protein, arsR family YPK_RS17160 PF02040 Arsenical pump membrane protein YPK_RS17165 PF04198 Putative sugar-binding domain YPK_RS17165 PF13936 Helix-turn-helix domain YPK_RS17170 PF02734 DAK2 domain YPK_RS17175 PF02733 Dak1 domain YPK_RS17185 PF00107 Zinc-binding dehydrogenase YPK_RS17185 PF08240 Alcohol dehydrogenase GroES-like domain YPK_RS17190 PF02502 Ribose/Galactose Isomerase YPK_RS17200 PF00488 MutS domain V YPK_RS17200 PF05190 MutS family domain IV YPK_RS17200 PF01624 MutS domain I YPK_RS17200 PF05188 MutS domain II YPK_RS17200 PF05192 MutS domain III YPK_RS17205 PF04545 Sigma-70, region 4 YPK_RS17205 PF04539 Sigma-70 region 3 YPK_RS17205 PF00140 Sigma-70 factor, region 1.2 YPK_RS17205 PF04542 Sigma-70 region 2 YPK_RS17210 PF01476 LysM domain YPK_RS17210 PF01551 Peptidase family M23 YPK_RS17220 PF01975 Survival protein SurE YPK_RS17225 PF01142 tRNA pseudouridine synthase D (TruD) YPK_RS17230 PF02542 YgbB family YPK_RS17235 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPK_RS17240 PF04977 Septum formation initiator YPK_RS17245 PF12084 Protein of unknown function (DUF3561) YPK_RS17255 PF00009 Elongation factor Tu GTP binding domain YPK_RS17260 PF01507 Phosphoadenosine phosphosulfate reductase family YPK_RS17265 PF10414 Sirohaem synthase dimerisation region YPK_RS17265 PF14824 Sirohaem biosynthesis protein central YPK_RS17265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YPK_RS17285 PF01507 Phosphoadenosine phosphosulfate reductase family YPK_RS17290 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YPK_RS17290 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YPK_RS17295 PF00667 FAD binding domain YPK_RS17295 PF00258 Flavodoxin YPK_RS17295 PF00175 Oxidoreductase NAD-binding domain YPK_RS17300 PF01242 6-pyruvoyl tetrahydropterin synthase YPK_RS17305 PF04055 Radical SAM superfamily YPK_RS17310 PF00080 Copper/zinc superoxide dismutase (SODC) YPK_RS17315 PF00113 Enolase, C-terminal TIM barrel domain YPK_RS17315 PF03952 Enolase, N-terminal domain YPK_RS17320 PF06418 CTP synthase N-terminus YPK_RS17320 PF00117 Glutamine amidotransferase class-I YPK_RS17325 PF03819 MazG nucleotide pyrophosphohydrolase domain YPK_RS17335 PF04607 Region found in RelA / SpoT proteins YPK_RS17335 PF02824 TGS domain YPK_RS17335 PF13291 ACT domain YPK_RS17340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS17340 PF00672 HAMP domain YPK_RS17340 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPK_RS17340 PF00072 Response regulator receiver domain YPK_RS17340 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS17340 PF01627 Hpt domain YPK_RS17345 PF00595 PDZ domain YPK_RS17350 PF01966 HD domain YPK_RS17350 PF13286 Phosphohydrolase-associated domain YPK_RS17355 PF01048 Phosphorylase superfamily YPK_RS17360 PF01497 Periplasmic binding protein YPK_RS17365 PF03458 UPF0126 domain YPK_RS17370 PF01521 Iron-sulphur cluster biosynthesis YPK_RS17375 PF00654 Voltage gated chloride channel YPK_RS17380 PF00202 Aminotransferase class-III YPK_RS17385 PF01032 FecCD transport family YPK_RS17390 PF01497 Periplasmic binding protein YPK_RS17395 PF00005 ABC transporter YPK_RS17400 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal YPK_RS17400 PF00912 Transglycosylase YPK_RS17400 PF00905 Penicillin binding protein transpeptidase domain YPK_RS17400 PF14814 Bifunctional transglycosylase second domain YPK_RS17405 PF00270 DEAD/DEAH box helicase YPK_RS17405 PF08482 ATP-dependent helicase C-terminal YPK_RS17405 PF00271 Helicase conserved C-terminal domain YPK_RS17405 PF04408 Helicase associated domain (HA2) YPK_RS17410 PF02834 LigT like Phosphoesterase YPK_RS17415 PF17746 SfsA N-terminal OB domain YPK_RS17415 PF03749 Sugar fermentation stimulation protein RE domain YPK_RS17420 PF01258 Prokaryotic dksA/traR C4-type zinc finger YPK_RS17425 PF00749 tRNA synthetases class I (E and Q), catalytic domain YPK_RS17430 PF01743 Poly A polymerase head domain YPK_RS17430 PF12626 Polymerase A arginine-rich C-terminus YPK_RS17430 PF12627 Probable RNA and SrmB- binding site of polymerase A YPK_RS17435 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YPK_RS17440 PF02548 Ketopantoate hydroxymethyltransferase YPK_RS17445 PF02569 Pantoate-beta-alanine ligase YPK_RS17450 PF02261 Aspartate decarboxylase YPK_RS17455 PF01522 Polysaccharide deacetylase YPK_RS17460 PF01061 ABC-2 type transporter YPK_RS17465 PF00005 ABC transporter YPK_RS17470 PF00484 Carbonic anhydrase YPK_RS17475 PF00156 Phosphoribosyl transferase domain YPK_RS17480 PF07732 Multicopper oxidase YPK_RS17480 PF00394 Multicopper oxidase YPK_RS17480 PF10518 TAT (twin-arginine translocation) pathway signal sequence YPK_RS17480 PF07731 Multicopper oxidase YPK_RS17485 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) YPK_RS17490 PF17284 Spermidine synthase tetramerisation domain YPK_RS17495 PF02675 S-adenosylmethionine decarboxylase YPK_RS17500 PF00892 EamA-like transporter family YPK_RS17505 PF06062 Uncharacterised protein family (UPF0231) YPK_RS17510 PF11791 Aconitate B N-terminal domain YPK_RS17510 PF00330 Aconitase family (aconitate hydratase) YPK_RS17510 PF06434 Aconitate hydratase 2 N-terminus YPK_RS17515 PF01797 Transposase IS200 like YPK_RS17525 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS17525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_RS17530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YPK_RS17530 PF00364 Biotin-requiring enzyme YPK_RS17530 PF02817 e3 binding domain YPK_RS17535 PF00456 Transketolase, thiamine diphosphate binding domain YPK_RS17535 PF17831 Pyruvate dehydrogenase E1 component middle domain YPK_RS17540 PF07729 FCD domain YPK_RS17540 PF00392 Bacterial regulatory proteins, gntR family YPK_RS17545 PF00324 Amino acid permease YPK_RS17550 PF17113 Regulatory signalling modulator protein AmpE YPK_RS17555 PF01510 N-acetylmuramoyl-L-alanine amidase YPK_RS17560 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YPK_RS17560 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YPK_RS17565 PF07963 Prokaryotic N-terminal methylation motif YPK_RS17570 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YPK_RS17570 PF00437 Type II/IV secretion system protein YPK_RS17575 PF00482 Type II secretion system (T2SS), protein F YPK_RS17580 PF00478 IMP dehydrogenase / GMP reductase domain YPK_RS17590 PF01121 Dephospho-CoA kinase YPK_RS17595 PF07072 Cell division protein YPK_RS17600 PF03884 DNA gyrase inhibitor YacG YPK_RS17605 PF01797 Transposase IS200 like YPK_RS17615 PF00293 NUDIX domain YPK_RS17620 PF01043 SecA preprotein cross-linking domain YPK_RS17620 PF07516 SecA Wing and Scaffold domain YPK_RS17620 PF07517 SecA DEAD-like domain YPK_RS17620 PF02810 SEC-C motif YPK_RS17625 PF06558 Secretion monitor precursor protein (SecM) YPK_RS17635 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YPK_RS17640 PF12327 FtsZ family, C-terminal domain YPK_RS17640 PF00091 Tubulin/FtsZ family, GTPase domain YPK_RS17645 PF02491 SHS2 domain inserted in FTSA YPK_RS17650 PF08478 POTRA domain, FtsQ-type YPK_RS17650 PF03799 Cell division protein FtsQ YPK_RS17655 PF01820 D-ala D-ala ligase N-terminus YPK_RS17655 PF07478 D-ala D-ala ligase C-terminus YPK_RS17660 PF01225 Mur ligase family, catalytic domain YPK_RS17660 PF02875 Mur ligase family, glutamate ligase domain YPK_RS17660 PF08245 Mur ligase middle domain YPK_RS17665 PF03033 Glycosyltransferase family 28 N-terminal domain YPK_RS17665 PF04101 Glycosyltransferase family 28 C-terminal domain YPK_RS17670 PF01098 Cell cycle protein YPK_RS17675 PF08245 Mur ligase middle domain YPK_RS17675 PF02875 Mur ligase family, glutamate ligase domain YPK_RS17680 PF00953 Glycosyl transferase family 4 YPK_RS17680 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YPK_RS17685 PF01225 Mur ligase family, catalytic domain YPK_RS17685 PF08245 Mur ligase middle domain YPK_RS17685 PF02875 Mur ligase family, glutamate ligase domain YPK_RS17690 PF08245 Mur ligase middle domain YPK_RS17690 PF02875 Mur ligase family, glutamate ligase domain YPK_RS17690 PF01225 Mur ligase family, catalytic domain YPK_RS17695 PF03717 Penicillin-binding Protein dimerisation domain YPK_RS17695 PF00905 Penicillin binding protein transpeptidase domain YPK_RS17700 PF04999 Cell division protein FtsL YPK_RS17705 PF01795 MraW methylase family YPK_RS17710 PF02381 MraZ protein, putative antitoxin-like YPK_RS17715 PF06610 L-alanine exporter YPK_RS17720 PF00356 Bacterial regulatory proteins, lacI family YPK_RS17720 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YPK_RS17730 PF10369 Small subunit of acetolactate synthase YPK_RS17735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_RS17735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_RS17735 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_RS17745 PF00501 AMP-binding enzyme YPK_RS17755 PF03466 LysR substrate binding domain YPK_RS17755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS17765 PF08502 LeuA allosteric (dimerisation) domain YPK_RS17765 PF00682 HMGL-like YPK_RS17770 PF00180 Isocitrate/isopropylmalate dehydrogenase YPK_RS17775 PF00330 Aconitase family (aconitate hydratase) YPK_RS17780 PF00694 Aconitase C-terminal domain YPK_RS17785 PF07690 Major Facilitator Superfamily YPK_RS17795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YPK_RS17795 PF12793 Sugar transport-related sRNA regulator N-term YPK_RS17810 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS17815 PF00005 ABC transporter YPK_RS17820 PF09335 SNARE associated Golgi protein YPK_RS17825 PF03104 DNA polymerase family B, exonuclease domain YPK_RS17825 PF00136 DNA polymerase family B YPK_RS17830 PF00176 SNF2 family N-terminal domain YPK_RS17830 PF18337 RapA N-terminal Tudor like domain YPK_RS17830 PF18339 RapA N-terminal Tudor like domain 1 YPK_RS17830 PF00271 Helicase conserved C-terminal domain YPK_RS17830 PF12137 RNA polymerase recycling family C-terminal YPK_RS17840 PF14331 ImcF-related N-terminal domain YPK_RS17840 PF06761 Intracellular multiplication and human macrophage-killing YPK_RS17840 PF06744 Type VI secretion protein IcmF C-terminal YPK_RS17845 PF00691 OmpA family YPK_RS17845 PF05736 OprF membrane domain YPK_RS17850 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YPK_RS17880 PF04717 Type VI secretion system, phage-baseplate injector YPK_RS17880 PF06715 Gp5 C-terminal repeat (3 copies) YPK_RS17885 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS17885 PF07724 AAA domain (Cdc48 subfamily) YPK_RS17885 PF17871 AAA lid domain YPK_RS17885 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_RS17895 PF05947 Type VI secretion system, TssF YPK_RS17910 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath YPK_RS17915 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 YPK_RS17930 PF00849 RNA pseudouridylate synthase YPK_RS17935 PF00226 DnaJ domain YPK_RS17935 PF05099 Tellurite resistance protein TerB YPK_RS17940 PF03968 OstA-like protein YPK_RS17940 PF04453 LPS transport system D YPK_RS17945 PF00639 PPIC-type PPIASE domain YPK_RS17945 PF09312 SurA N-terminal domain YPK_RS17950 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YPK_RS17955 PF00398 Ribosomal RNA adenine dimethylase YPK_RS17960 PF04379 ApaG domain YPK_RS17965 PF00149 Calcineurin-like phosphoesterase YPK_RS17980 PF00186 Dihydrofolate reductase YPK_RS17985 PF12821 Threonine/Serine exporter, ThrE YPK_RS17990 PF06738 Putative threonine/serine exporter YPK_RS17995 PF01810 LysE type translocator YPK_RS18000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YPK_RS18000 PF02142 MGS-like domain YPK_RS18000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YPK_RS18005 PF00117 Glutamine amidotransferase class-I YPK_RS18005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YPK_RS18010 PF05173 Dihydrodipicolinate reductase, C-terminus YPK_RS18010 PF01113 Dihydrodipicolinate reductase, N-terminus YPK_RS18015 PF02401 LytB protein YPK_RS18020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_RS18025 PF01252 Signal peptidase (SPase) II YPK_RS18030 PF06827 Zinc finger found in FPG and IleRS YPK_RS18030 PF08264 Anticodon-binding domain of tRNA YPK_RS18030 PF00133 tRNA synthetases class I (I, L, M and V) YPK_RS18035 PF01687 Riboflavin kinase YPK_RS18035 PF06574 FAD synthetase YPK_RS18045 PF01649 Ribosomal protein S20 YPK_RS18050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS18050 PF03466 LysR substrate binding domain YPK_RS18055 PF06965 Na+/H+ antiporter 1 YPK_RS18060 PF00684 DnaJ central domain YPK_RS18060 PF01556 DnaJ C terminal domain YPK_RS18060 PF00226 DnaJ domain YPK_RS18065 PF00012 Hsp70 protein YPK_RS18070 PF01184 GPR1/FUN34/yaaH family YPK_RS18080 PF07690 Major Facilitator Superfamily YPK_RS18085 PF00994 Probable molybdopterin binding domain YPK_RS18090 PF00923 Transaldolase/Fructose-6-phosphate aldolase YPK_RS18095 PF03883 Peroxide stress protein YaaA YPK_RS18100 PF14821 Threonine synthase N terminus YPK_RS18100 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS18105 PF08544 GHMP kinases C terminal YPK_RS18105 PF00288 GHMP kinases N terminal domain YPK_RS18110 PF00742 Homoserine dehydrogenase YPK_RS18110 PF03447 Homoserine dehydrogenase, NAD binding domain YPK_RS18110 PF13840 ACT domain YPK_RS18110 PF01842 ACT domain YPK_RS18110 PF00696 Amino acid kinase family YPK_RS18115 PF00486 Transcriptional regulatory protein, C terminal YPK_RS18115 PF00072 Response regulator receiver domain YPK_RS18120 PF05981 CreA protein YPK_RS18125 PF06445 GyrI-like small molecule binding domain YPK_RS18125 PF12833 Helix-turn-helix domain YPK_RS18130 PF00300 Histidine phosphatase superfamily (branch 1) YPK_RS18135 PF01931 Protein of unknown function DUF84 YPK_RS18140 PF01371 Trp repressor protein YPK_RS18145 PF01464 Transglycosylase SLT domain YPK_RS18145 PF14718 Soluble lytic murein transglycosylase L domain YPK_RS18150 PF00690 Cation transporter/ATPase, N-terminus YPK_RS18150 PF00689 Cation transporting ATPase, C-terminus YPK_RS18160 PF17152 Periplasmic sensor domain YPK_RS18160 PF00990 Diguanylate cyclase, GGDEF domain YPK_RS18165 PF00691 OmpA family YPK_RS18170 PF12848 ABC transporter YPK_RS18170 PF00005 ABC transporter YPK_RS18175 PF02661 Fic/DOC family YPK_RS18180 PF13521 AAA domain YPK_RS18180 PF01381 Helix-turn-helix YPK_RS18185 PF18073 Rubredoxin metal binding domain YPK_RS18190 PF18429 Domain of unknown function (DUF5609) YPK_RS18195 PF10144 Bacterial virulence factor haemolysin YPK_RS18200 PF01048 Phosphorylase superfamily YPK_RS18205 PF01676 Metalloenzyme superfamily YPK_RS18210 PF02885 Glycosyl transferase family, helical bundle domain YPK_RS18210 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YPK_RS18210 PF00591 Glycosyl transferase family, a/b domain YPK_RS18215 PF01791 DeoC/LacD family aldolase YPK_RS18220 PF07670 Nucleoside recognition YPK_RS18220 PF07662 Na+ dependent nucleoside transporter C-terminus YPK_RS18220 PF01773 Na+ dependent nucleoside transporter N-terminus YPK_RS18225 PF01026 TatD related DNase YPK_RS18230 PF01734 Patatin-like phospholipase YPK_RS18235 PF07043 Protein of unknown function (DUF1328) YPK_RS18240 PF04972 BON domain YPK_RS18245 PF03144 Elongation factor Tu domain 2 YPK_RS18245 PF00009 Elongation factor Tu GTP binding domain YPK_RS18245 PF16658 Class II release factor RF3, C-terminal domain YPK_RS18250 PF00583 Acetyltransferase (GNAT) family YPK_RS18255 PF03603 DNA polymerase III psi subunit YPK_RS18260 PF05175 Methyltransferase small domain YPK_RS18260 PF08468 Methyltransferase small domain N-terminal YPK_RS18280 PF07256 Protein of unknown function (DUF1435) YPK_RS18285 PF00990 Diguanylate cyclase, GGDEF domain YPK_RS18290 PF01095 Pectinesterase YPK_RS18310 PF00873 AcrB/AcrD/AcrF family YPK_RS18315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS18335 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPK_RS18340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS18340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_RS18345 PF04198 Putative sugar-binding domain YPK_RS18345 PF00325 Bacterial regulatory proteins, crp family YPK_RS18355 PF00005 ABC transporter YPK_RS18360 PF02653 Branched-chain amino acid transport system / permease component YPK_RS18365 PF02653 Branched-chain amino acid transport system / permease component YPK_RS18370 PF13407 Periplasmic binding protein domain YPK_RS18375 PF01791 DeoC/LacD family aldolase YPK_RS18380 PF03992 Antibiotic biosynthesis monooxygenase YPK_RS18385 PF10696 Protein of unknown function (DUF2501) YPK_RS18390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YPK_RS18390 PF00381 PTS HPr component phosphorylation site YPK_RS18390 PF00391 PEP-utilising enzyme, mobile domain YPK_RS18390 PF02896 PEP-utilising enzyme, TIM barrel domain YPK_RS18390 PF05524 PEP-utilising enzyme, N-terminal YPK_RS18400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_RS18405 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YPK_RS18410 PF12833 Helix-turn-helix domain YPK_RS18420 PF05987 Bacterial protein of unknown function (DUF898) YPK_RS18430 PF12161 HsdM N-terminal domain YPK_RS18430 PF02384 N-6 DNA Methylase YPK_RS18435 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPK_RS18435 PF18766 SWI2/SNF2 ATPase YPK_RS18435 PF12008 Type I restriction and modification enzyme - subunit R C terminal YPK_RS18460 PF12161 HsdM N-terminal domain YPK_RS18460 PF02384 N-6 DNA Methylase YPK_RS18470 PF12008 Type I restriction and modification enzyme - subunit R C terminal YPK_RS18470 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YPK_RS18470 PF18766 SWI2/SNF2 ATPase YPK_RS18475 PF00589 Phage integrase family YPK_RS18475 PF13356 Arm DNA-binding domain YPK_RS18485 PF03739 Lipopolysaccharide export system permease LptF/LptG YPK_RS18490 PF03739 Lipopolysaccharide export system permease LptF/LptG YPK_RS18495 PF00883 Cytosol aminopeptidase family, catalytic domain YPK_RS18495 PF02789 Cytosol aminopeptidase family, N-terminal domain YPK_RS18500 PF04364 DNA polymerase III chi subunit, HolC YPK_RS18505 PF08264 Anticodon-binding domain of tRNA YPK_RS18505 PF00133 tRNA synthetases class I (I, L, M and V) YPK_RS18505 PF10458 Valyl tRNA synthetase tRNA binding arm YPK_RS18510 PF00583 Acetyltransferase (GNAT) family YPK_RS18515 PF06877 Regulator of ribonuclease activity B YPK_RS18520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YPK_RS18520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YPK_RS18525 PF04074 YhcH/YjgK/YiaL YPK_RS18535 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS18540 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS18540 PF12911 N-terminal TM domain of oligopeptide transport permease C YPK_RS18545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_RS18545 PF00005 ABC transporter YPK_RS18550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YPK_RS18550 PF00005 ABC transporter YPK_RS18555 PF03477 ATP cone domain YPK_RS18555 PF13597 Anaerobic ribonucleoside-triphosphate reductase YPK_RS18565 PF00392 Bacterial regulatory proteins, gntR family YPK_RS18565 PF07702 UTRA domain YPK_RS18570 PF06754 Phosphonate metabolism protein PhnG YPK_RS18575 PF05845 Bacterial phosphonate metabolism protein (PhnH) YPK_RS18580 PF05861 Bacterial phosphonate metabolism protein (PhnI) YPK_RS18585 PF06007 Phosphonate metabolism protein PhnJ YPK_RS18590 PF00005 ABC transporter YPK_RS18595 PF00005 ABC transporter YPK_RS18600 PF07969 Amidohydrolase family YPK_RS18610 PF12706 Beta-lactamase superfamily domain YPK_RS18615 PF13460 NAD(P)H-binding YPK_RS18630 PF00005 ABC transporter YPK_RS18630 PF03459 TOBE domain YPK_RS18630 PF17912 MalK OB fold domain YPK_RS18635 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS18640 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS18645 PF13416 Bacterial extracellular solute-binding protein YPK_RS18660 PF01541 GIY-YIG catalytic domain YPK_RS18670 PF13508 Acetyltransferase (GNAT) domain YPK_RS18675 PF02036 SCP-2 sterol transfer family YPK_RS18685 PF01136 Peptidase family U32 YPK_RS18690 PF01136 Peptidase family U32 YPK_RS18695 PF02321 Outer membrane efflux protein YPK_RS18695 PF08139 Prokaryotic membrane lipoprotein lipid attachment site YPK_RS18700 PF00873 AcrB/AcrD/AcrF family YPK_RS18705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS18705 PF00529 HlyD membrane-fusion protein of T1SS YPK_RS18710 PF00296 Luciferase-like monooxygenase YPK_RS18715 PF01381 Helix-turn-helix YPK_RS18730 PF12343 Cold shock protein DEAD box A YPK_RS18730 PF03880 DbpA RNA binding domain YPK_RS18730 PF00270 DEAD/DEAH box helicase YPK_RS18730 PF00271 Helicase conserved C-terminal domain YPK_RS18735 PF13181 Tetratricopeptide repeat YPK_RS18735 PF07719 Tetratricopeptide repeat YPK_RS18740 PF00575 S1 RNA binding domain YPK_RS18740 PF01138 3' exoribonuclease family, domain 1 YPK_RS18740 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YPK_RS18740 PF03725 3' exoribonuclease family, domain 2 YPK_RS18740 PF00013 KH domain YPK_RS18745 PF00312 Ribosomal protein S15 YPK_RS18750 PF01509 TruB family pseudouridylate synthase (N terminal domain) YPK_RS18750 PF16198 tRNA pseudouridylate synthase B C-terminal domain YPK_RS18750 PF09157 Pseudouridine synthase II TruB, C-terminal YPK_RS18755 PF02033 Ribosome-binding factor A YPK_RS18760 PF00009 Elongation factor Tu GTP binding domain YPK_RS18760 PF04760 Translation initiation factor IF-2, N-terminal region YPK_RS18760 PF08364 Bacterial translation initiation factor IF-2 associated region YPK_RS18760 PF11987 Translation-initiation factor 2 YPK_RS18760 PF03144 Elongation factor Tu domain 2 YPK_RS18765 PF08529 NusA N-terminal domain YPK_RS18765 PF00575 S1 RNA binding domain YPK_RS18765 PF13184 NusA-like KH domain YPK_RS18770 PF02576 RimP N-terminal domain YPK_RS18770 PF17384 RimP C-terminal SH3 domain YPK_RS18785 PF03840 Preprotein translocase SecG subunit YPK_RS18790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YPK_RS18790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YPK_RS18790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YPK_RS18790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YPK_RS18795 PF00809 Pterin binding enzyme YPK_RS18800 PF01434 Peptidase family M41 YPK_RS18800 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS18800 PF17862 AAA+ lid domain YPK_RS18800 PF06480 FtsH Extracellular YPK_RS18805 PF01728 FtsJ-like methyltransferase YPK_RS18810 PF01985 CRS1 / YhbY (CRM) domain YPK_RS18815 PF03449 Transcription elongation factor, N-terminal YPK_RS18815 PF01272 Transcription elongation factor, GreA/GreB, C-term YPK_RS18820 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YPK_RS18825 PF00072 Response regulator receiver domain YPK_RS18825 PF00486 Transcriptional regulatory protein, C terminal YPK_RS18830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS18830 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS18830 PF00672 HAMP domain YPK_RS18835 PF01018 GTP1/OBG YPK_RS18835 PF01926 50S ribosome-binding GTPase YPK_RS18895 PF00892 EamA-like transporter family YPK_RS18900 PF01016 Ribosomal L27 protein YPK_RS18905 PF00829 Ribosomal prokaryotic L21 protein YPK_RS18910 PF00348 Polyprenyl synthetase YPK_RS18920 PF13693 Winged helix-turn-helix DNA-binding YPK_RS18925 PF00056 lactate/malate dehydrogenase, NAD binding domain YPK_RS18925 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YPK_RS18930 PF01316 Arginine repressor, DNA binding domain YPK_RS18930 PF02863 Arginine repressor, C-terminal domain YPK_RS18945 PF08245 Mur ligase middle domain YPK_RS18945 PF01225 Mur ligase family, catalytic domain YPK_RS18945 PF02875 Mur ligase family, glutamate ligase domain YPK_RS18950 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YPK_RS18955 PF00719 Inorganic pyrophosphatase YPK_RS18960 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like YPK_RS18965 PF04357 TamB, inner membrane protein subunit of TAM complex YPK_RS18970 PF01103 Surface antigen YPK_RS18970 PF17243 POTRA domain TamA domain 1 YPK_RS18970 PF07244 Surface antigen variable number repeat YPK_RS18975 PF01625 Peptide methionine sulfoxide reductase YPK_RS18980 PF01595 Cyclin M transmembrane N-terminal domain YPK_RS18980 PF00571 CBS domain YPK_RS18980 PF03471 Transporter associated domain YPK_RS18985 PF06526 Protein of unknown function (DUF1107) YPK_RS18990 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) YPK_RS18995 PF00459 Inositol monophosphatase family YPK_RS19000 PF02872 5'-nucleotidase, C-terminal domain YPK_RS19000 PF00149 Calcineurin-like phosphoesterase YPK_RS19005 PF04405 Domain of Unknown function (DUF542) YPK_RS19005 PF01814 Hemerythrin HHE cation binding domain YPK_RS19010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YPK_RS19010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YPK_RS19015 PF08525 Opacity-associated protein A N-terminal motif YPK_RS19015 PF04225 Opacity-associated protein A LysM-like domain YPK_RS19025 PF03948 Ribosomal protein L9, C-terminal domain YPK_RS19025 PF01281 Ribosomal protein L9, N-terminal domain YPK_RS19030 PF01084 Ribosomal protein S18 YPK_RS19035 PF00436 Single-strand binding protein family YPK_RS19040 PF01250 Ribosomal protein S6 YPK_RS19050 PF00326 Prolyl oligopeptidase family YPK_RS19055 PF07338 Protein of unknown function (DUF1471) YPK_RS19060 PF02770 Acyl-CoA dehydrogenase, middle domain YPK_RS19060 PF18158 Adaptive response protein AidB N-terminal domain YPK_RS19060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YPK_RS19065 PF00588 SpoU rRNA Methylase family YPK_RS19065 PF08032 RNA 2'-O ribose methyltransferase substrate binding YPK_RS19070 PF08206 Ribonuclease B OB domain YPK_RS19070 PF00773 RNB domain YPK_RS19070 PF08461 Ribonuclease R winged-helix domain YPK_RS19070 PF17876 Cold shock domain YPK_RS19070 PF00575 S1 RNA binding domain YPK_RS19075 PF02082 Transcriptional regulator YPK_RS19080 PF00709 Adenylosuccinate synthetase YPK_RS19085 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) YPK_RS19090 PF01145 SPFH domain / Band 7 family YPK_RS19095 PF01145 SPFH domain / Band 7 family YPK_RS19095 PF12221 Bacterial membrane protein N terminal YPK_RS19100 PF01926 50S ribosome-binding GTPase YPK_RS19100 PF13167 GTP-binding GTPase N-terminal YPK_RS19100 PF16360 GTP-binding GTPase Middle Region YPK_RS19105 PF17209 Hfq protein YPK_RS19115 PF08676 MutL C terminal dimerisation domain YPK_RS19115 PF01119 DNA mismatch repair protein, C-terminal domain YPK_RS19120 PF01520 N-acetylmuramoyl-L-alanine amidase YPK_RS19125 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YPK_RS19130 PF01256 Carbohydrate kinase YPK_RS19130 PF03853 YjeF-related protein N-terminus YPK_RS19135 PF08331 Domain of unknown function (DUF1730) YPK_RS19160 PF00929 Exonuclease YPK_RS19170 PF03193 RsgA GTPase YPK_RS19175 PF02666 Phosphatidylserine decarboxylase YPK_RS19180 PF00924 Mechanosensitive ion channel YPK_RS19180 PF12795 Mechanosensitive ion channel porin domain YPK_RS19180 PF12794 Mechanosensitive ion channel inner membrane domain 1 YPK_RS19185 PF00152 tRNA synthetases class II (D, K and N) YPK_RS19195 PF02910 Fumarate reductase flavoprotein C-term YPK_RS19195 PF00890 FAD binding domain YPK_RS19200 PF13183 4Fe-4S dicluster domain YPK_RS19200 PF13085 2Fe-2S iron-sulfur cluster binding domain YPK_RS19205 PF02300 Fumarate reductase subunit C YPK_RS19210 PF02313 Fumarate reductase subunit D YPK_RS19215 PF00893 Small Multidrug Resistance protein YPK_RS19220 PF09285 Elongation factor P, C-terminal YPK_RS19220 PF01132 Elongation factor P (EF-P) OB domain YPK_RS19220 PF08207 Elongation factor P (EF-P) KOW-like domain YPK_RS19225 PF04055 Radical SAM superfamily YPK_RS19230 PF13698 Domain of unknown function (DUF4156) YPK_RS19235 PF00118 TCP-1/cpn60 chaperonin family YPK_RS19240 PF00166 Chaperonin 10 Kd subunit YPK_RS19245 PF04186 FxsA cytoplasmic membrane protein YPK_RS19250 PF00206 Lyase YPK_RS19250 PF10415 Fumarase C C-terminus YPK_RS19255 PF03605 Anaerobic c4-dicarboxylate membrane transporter YPK_RS19260 PF03091 CutA1 divalent ion tolerance protein YPK_RS19265 PF11412 Disulphide bond corrector protein DsbC YPK_RS19265 PF02683 Cytochrome C biogenesis protein transmembrane region YPK_RS19270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YPK_RS19270 PF01568 Molydopterin dinucleotide binding domain YPK_RS19270 PF00384 Molybdopterin oxidoreductase YPK_RS19275 PF12800 4Fe-4S binding domain YPK_RS19275 PF13247 4Fe-4S dicluster domain YPK_RS19280 PF13247 4Fe-4S dicluster domain YPK_RS19280 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS19280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YPK_RS19315 PF06379 L-rhamnose-proton symport protein (RhaT) YPK_RS19320 PF02311 AraC-like ligand binding domain YPK_RS19320 PF12833 Helix-turn-helix domain YPK_RS19325 PF02311 AraC-like ligand binding domain YPK_RS19325 PF12833 Helix-turn-helix domain YPK_RS19340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_RS19340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS19345 PF06134 L-rhamnose isomerase (RhaA) YPK_RS19350 PF00596 Class II Aldolase and Adducin N-terminal domain YPK_RS19355 PF00465 Iron-containing alcohol dehydrogenase YPK_RS19360 PF05336 L-rhamnose mutarotase YPK_RS19365 PF00436 Single-strand binding protein family YPK_RS19370 PF17755 UvrA DNA-binding domain YPK_RS19370 PF00005 ABC transporter YPK_RS19370 PF17760 UvrA interaction domain YPK_RS19375 PF04237 YjbR YPK_RS19380 PF00155 Aminotransferase class I and II YPK_RS19385 PF01168 Alanine racemase, N-terminal domain YPK_RS19385 PF00842 Alanine racemase, C-terminal domain YPK_RS19390 PF03796 DnaB-like helicase C terminal domain YPK_RS19390 PF00772 DnaB-like helicase N terminal domain YPK_RS19395 PF00107 Zinc-binding dehydrogenase YPK_RS19395 PF08240 Alcohol dehydrogenase GroES-like domain YPK_RS19400 PF09583 Phage shock protein G (Phageshock_PspG) YPK_RS19405 PF01207 Dihydrouridine synthase (Dus) YPK_RS19410 PF01475 Ferric uptake regulator family YPK_RS19415 PF01726 LexA DNA binding domain YPK_RS19415 PF00717 Peptidase S24-like YPK_RS19420 PF01219 Prokaryotic diacylglycerol kinase YPK_RS19425 PF01553 Acyltransferase YPK_RS19430 PF01040 UbiA prenyltransferase family YPK_RS19435 PF04345 Chorismate lyase YPK_RS19440 PF12951 Passenger-associated-transport-repeat YPK_RS19445 PF01565 FAD binding domain YPK_RS19445 PF08031 Berberine and berberine like YPK_RS19465 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS19470 PF00577 Outer membrane usher protein YPK_RS19470 PF13954 PapC N-terminal domain YPK_RS19470 PF13953 PapC C-terminal domain YPK_RS19480 PF02342 TerD domain YPK_RS19485 PF02342 TerD domain YPK_RS19490 PF03741 Integral membrane protein TerC family YPK_RS19495 PF05099 Tellurite resistance protein TerB YPK_RS19500 PF02342 TerD domain YPK_RS19505 PF02342 TerD domain YPK_RS19525 PF11202 Phosphoribosyl transferase (PRTase) YPK_RS19525 PF15608 PELOTA RNA binding domain YPK_RS19545 PF04055 Radical SAM superfamily YPK_RS19550 PF06228 Haem utilisation ChuX/HutX YPK_RS19555 PF13460 NAD(P)H-binding YPK_RS19565 PF00593 TonB dependent receptor YPK_RS19565 PF07715 TonB-dependent Receptor Plug Domain YPK_RS19570 PF05171 Haemin-degrading HemS.ChuX domain YPK_RS19575 PF01497 Periplasmic binding protein YPK_RS19580 PF01032 FecCD transport family YPK_RS19585 PF00005 ABC transporter YPK_RS19590 PF01053 Cys/Met metabolism PLP-dependent enzyme YPK_RS19595 PF03222 Tryptophan/tyrosine permease family YPK_RS19600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS19600 PF03466 LysR substrate binding domain YPK_RS19605 PF01206 Sulfurtransferase TusA YPK_RS19610 PF04143 Sulphur transport YPK_RS19615 PF01312 FlhB HrpN YscU SpaS Family YPK_RS19620 PF01311 Bacterial export proteins, family 1 YPK_RS19625 PF01313 Bacterial export proteins, family 3 YPK_RS19630 PF00813 FliP family YPK_RS19650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_RS19650 PF18269 T3SS EscN ATPase C-terminal domain YPK_RS19655 PF00771 FHIPEP family YPK_RS19670 PF01514 Secretory protein of YscJ/FliF family YPK_RS19690 PF14525 AraC-binding-like domain YPK_RS19690 PF12833 Helix-turn-helix domain YPK_RS19705 PF03958 Bacterial type II/III secretion system short domain YPK_RS19705 PF00263 Bacterial type II and III secretion system protein YPK_RS19710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YPK_RS19710 PF01627 Hpt domain YPK_RS19710 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS19710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS19710 PF00672 HAMP domain YPK_RS19710 PF00072 Response regulator receiver domain YPK_RS19715 PF00196 Bacterial regulatory proteins, luxR family YPK_RS19715 PF00072 Response regulator receiver domain YPK_RS19720 PF00375 Sodium:dicarboxylate symporter family YPK_RS19725 PF16177 Acetyl-coenzyme A synthetase N-terminus YPK_RS19725 PF13193 AMP-binding enzyme C-terminal domain YPK_RS19725 PF00501 AMP-binding enzyme YPK_RS19730 PF04341 Protein of unknown function, DUF485 YPK_RS19735 PF00474 Sodium:solute symporter family YPK_RS19745 PF13276 HTH-like domain YPK_RS19745 PF13683 Integrase core domain YPK_RS19750 PF01527 Transposase YPK_RS19785 PF12724 Flavodoxin domain YPK_RS19790 PF02386 Cation transport protein YPK_RS19795 PF09186 Domain of unknown function (DUF1949) YPK_RS19795 PF01205 Uncharacterized protein family UPF0029 YPK_RS19800 PF00557 Metallopeptidase family M24 YPK_RS19805 PF00378 Enoyl-CoA hydratase/isomerase YPK_RS19805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YPK_RS19805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YPK_RS19810 PF00108 Thiolase, N-terminal domain YPK_RS19810 PF02803 Thiolase, C-terminal domain YPK_RS19815 PF00970 Oxidoreductase FAD-binding domain YPK_RS19815 PF00175 Oxidoreductase NAD-binding domain YPK_RS19820 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPK_RS19825 PF02357 Transcription termination factor nusG YPK_RS19830 PF00490 Delta-aminolevulinic acid dehydratase YPK_RS19835 PF01026 TatD related DNase YPK_RS19840 PF00902 Sec-independent protein translocase protein (TatC) YPK_RS19850 PF02416 mttA/Hcf106 family YPK_RS19855 PF03109 ABC1 family YPK_RS19860 PF02036 SCP-2 sterol transfer family YPK_RS19865 PF01209 ubiE/COQ5 methyltransferase family YPK_RS19870 PF02646 RmuC family YPK_RS19875 PF09335 SNARE associated Golgi protein YPK_RS19880 PF02554 Carbon starvation protein CstA YPK_RS19880 PF13722 5TM C-terminal transporter carbon starvation CstA YPK_RS19890 PF01048 Phosphorylase superfamily YPK_RS19895 PF01738 Dienelactone hydrolase family YPK_RS19900 PF08267 Cobalamin-independent synthase, N-terminal domain YPK_RS19900 PF01717 Cobalamin-independent synthase, Catalytic domain YPK_RS19905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS19905 PF03466 LysR substrate binding domain YPK_RS19910 PF00892 EamA-like transporter family YPK_RS19925 PF03547 Membrane transport protein YPK_RS19930 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_RS19935 PF00005 ABC transporter YPK_RS19935 PF17912 MalK OB fold domain YPK_RS19940 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS19945 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS19950 PF13416 Bacterial extracellular solute-binding protein YPK_RS19990 PF00005 ABC transporter YPK_RS19995 PF00005 ABC transporter YPK_RS19995 PF12399 Branched-chain amino acid ATP-binding cassette transporter YPK_RS20000 PF11862 Domain of unknown function (DUF3382) YPK_RS20000 PF02653 Branched-chain amino acid transport system / permease component YPK_RS20005 PF02653 Branched-chain amino acid transport system / permease component YPK_RS20010 PF13458 Periplasmic binding protein YPK_RS20015 PF12568 Acetyltransferase (GNAT) domain, PanZ YPK_RS20020 PF00140 Sigma-70 factor, region 1.2 YPK_RS20020 PF04545 Sigma-70, region 4 YPK_RS20020 PF04542 Sigma-70 region 2 YPK_RS20025 PF02687 FtsX-like permease family YPK_RS20025 PF18075 FtsX extracellular domain YPK_RS20030 PF00005 ABC transporter YPK_RS20035 PF02881 SRP54-type protein, helical bundle domain YPK_RS20035 PF00448 SRP54-type protein, GTPase domain YPK_RS20035 PF02881 SRP54-type protein, helical bundle domain YPK_RS20035 PF00448 SRP54-type protein, GTPase domain YPK_RS20050 PF06611 Protein of unknown function (DUF1145) YPK_RS20065 PF07947 YhhN family YPK_RS20070 PF00403 Heavy-metal-associated domain YPK_RS20075 PF01206 Sulfurtransferase TusA YPK_RS20080 PF02592 Putative vitamin uptake transporter YPK_RS20085 PF08786 DcrB YPK_RS20090 PF02754 Cysteine-rich domain YPK_RS20090 PF13183 4Fe-4S dicluster domain YPK_RS20095 PF00890 FAD binding domain YPK_RS20100 PF01266 FAD dependent oxidoreductase YPK_RS20100 PF04324 BFD-like [2Fe-2S] binding domain YPK_RS20110 PF03009 Glycerophosphoryl diester phosphodiesterase family YPK_RS20125 PF12146 Serine aminopeptidase, S33 YPK_RS20130 PF01810 LysE type translocator YPK_RS20135 PF01810 LysE type translocator YPK_RS20140 PF16124 RecQ zinc-binding YPK_RS20140 PF00270 DEAD/DEAH box helicase YPK_RS20140 PF09382 RQC domain YPK_RS20140 PF00570 HRDC domain YPK_RS20140 PF00271 Helicase conserved C-terminal domain YPK_RS20145 PF02253 Phospholipase A1 YPK_RS20150 PF03061 Thioesterase superfamily YPK_RS20155 PF00892 EamA-like transporter family YPK_RS20160 PF01544 CorA-like Mg2+ transporter protein YPK_RS20165 PF09370 Phosphoenolpyruvate hydrolase-like YPK_RS20180 PF00580 UvrD/REP helicase N-terminal domain YPK_RS20180 PF13361 UvrD-like helicase C-terminal domain YPK_RS20185 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS20190 PF02899 Phage integrase, N-terminal SAM-like domain YPK_RS20190 PF00589 Phage integrase family YPK_RS20195 PF04340 Protein of unknown function, DUF484 YPK_RS20200 PF01678 Diaminopimelate epimerase YPK_RS20205 PF13627 Prokaryotic lipoprotein-attachment site YPK_RS20210 PF01491 Frataxin-like domain YPK_RS20215 PF12633 Adenylate cyclase NT domain YPK_RS20215 PF01295 Adenylate cyclase, class-I YPK_RS20220 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YPK_RS20220 PF03900 Porphobilinogen deaminase, C-terminal domain YPK_RS20225 PF02602 Uroporphyrinogen-III synthase HemD YPK_RS20230 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YPK_RS20235 PF07719 Tetratricopeptide repeat YPK_RS20235 PF07219 HemY protein N-terminus YPK_RS20260 PF00324 Amino acid permease YPK_RS20265 PF03808 Glycosyl transferase WecB/TagA/CpsF family YPK_RS20270 PF06899 WzyE protein, O-antigen assembly polymerase YPK_RS20275 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 YPK_RS20280 PF01943 Polysaccharide biosynthesis protein YPK_RS20285 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YPK_RS20295 PF00483 Nucleotidyl transferase YPK_RS20300 PF16363 GDP-mannose 4,6 dehydratase YPK_RS20305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YPK_RS20305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YPK_RS20305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YPK_RS20310 PF02350 UDP-N-acetylglucosamine 2-epimerase YPK_RS20315 PF02706 Chain length determinant protein YPK_RS20320 PF00953 Glycosyl transferase family 4 YPK_RS20325 PF07498 Rho termination factor, N-terminal domain YPK_RS20325 PF07497 Rho termination factor, RNA-binding domain YPK_RS20325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_RS20330 PF00085 Thioredoxin YPK_RS20335 PF00271 Helicase conserved C-terminal domain YPK_RS20335 PF00270 DEAD/DEAH box helicase YPK_RS20340 PF02541 Ppx/GppA phosphatase family YPK_RS20345 PF00580 UvrD/REP helicase N-terminal domain YPK_RS20345 PF13361 UvrD-like helicase C-terminal domain YPK_RS20375 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS20375 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS20380 PF13953 PapC C-terminal domain YPK_RS20380 PF00577 Outer membrane usher protein YPK_RS20380 PF13954 PapC N-terminal domain YPK_RS20390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain YPK_RS20390 PF02753 Pili assembly chaperone PapD, C-terminal domain YPK_RS20400 PF01320 Colicin immunity protein / pyocin immunity protein YPK_RS20425 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YPK_RS20425 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YPK_RS20430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS20430 PF03466 LysR substrate binding domain YPK_RS20450 PF00291 Pyridoxal-phosphate dependent enzyme YPK_RS20450 PF00585 C-terminal regulatory domain of Threonine dehydratase YPK_RS20455 PF00920 Dehydratase family YPK_RS20465 PF01063 Amino-transferase class IV YPK_RS20475 PF00205 Thiamine pyrophosphate enzyme, central domain YPK_RS20475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YPK_RS20475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YPK_RS20480 PF13335 Magnesium chelatase, subunit ChlI C-terminal YPK_RS20480 PF01078 Magnesium chelatase, subunit ChlI YPK_RS20485 PF04219 Protein of unknown function, DUF YPK_RS20490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS20490 PF03466 LysR substrate binding domain YPK_RS20495 PF02653 Branched-chain amino acid transport system / permease component YPK_RS20500 PF02653 Branched-chain amino acid transport system / permease component YPK_RS20505 PF00005 ABC transporter YPK_RS20510 PF13407 Periplasmic binding protein domain YPK_RS20550 PF01177 Asp/Glu/Hydantoin racemase YPK_RS20555 PF07715 TonB-dependent Receptor Plug Domain YPK_RS20555 PF00593 TonB dependent receptor YPK_RS20565 PF05958 tRNA (Uracil-5-)-methyltransferase YPK_RS20570 PF07226 Protein of unknown function (DUF1422) YPK_RS20575 PF00440 Bacterial regulatory proteins, tetR family YPK_RS20580 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS20580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_RS20585 PF03466 LysR substrate binding domain YPK_RS20585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS20590 PF08534 Redoxin YPK_RS20590 PF00462 Glutaredoxin YPK_RS20595 PF07992 Pyridine nucleotide-disulphide oxidoreductase YPK_RS20595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YPK_RS20600 PF03544 Gram-negative bacterial TonB protein C-terminal YPK_RS20605 PF00529 HlyD membrane-fusion protein of T1SS YPK_RS20610 PF00664 ABC transporter transmembrane region YPK_RS20610 PF00005 ABC transporter YPK_RS20620 PF07715 TonB-dependent Receptor Plug Domain YPK_RS20620 PF00593 TonB dependent receptor YPK_RS20630 PF00206 Lyase YPK_RS20630 PF14698 Argininosuccinate lyase C-terminal YPK_RS20635 PF00696 Amino acid kinase family YPK_RS20640 PF01118 Semialdehyde dehydrogenase, NAD binding domain YPK_RS20640 PF02774 Semialdehyde dehydrogenase, dimerisation domain YPK_RS20645 PF07687 Peptidase dimerisation domain YPK_RS20645 PF01546 Peptidase family M20/M25/M40 YPK_RS20650 PF00311 Phosphoenolpyruvate carboxylase YPK_RS20660 PF02219 Methylenetetrahydrofolate reductase YPK_RS20665 PF00742 Homoserine dehydrogenase YPK_RS20665 PF00696 Amino acid kinase family YPK_RS20665 PF03447 Homoserine dehydrogenase, NAD binding domain YPK_RS20670 PF01053 Cys/Met metabolism PLP-dependent enzyme YPK_RS20675 PF01340 Met Apo-repressor, MetJ YPK_RS20685 PF05360 yiaA/B two helix domain YPK_RS20690 PF01197 Ribosomal protein L31 YPK_RS20695 PF17764 3′ DNA-binding domain (3′BD) YPK_RS20695 PF00271 Helicase conserved C-terminal domain YPK_RS20695 PF00270 DEAD/DEAH box helicase YPK_RS20695 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YPK_RS20695 PF18074 Primosomal protein N C-terminal domain YPK_RS20705 PF00356 Bacterial regulatory proteins, lacI family YPK_RS20710 PF05036 Sporulation related domain YPK_RS20715 PF00227 Proteasome subunit YPK_RS20720 PF07724 AAA domain (Cdc48 subfamily) YPK_RS20720 PF00004 ATPase family associated with various cellular activities (AAA) YPK_RS20720 PF10431 C-terminal, D2-small domain, of ClpB protein YPK_RS20725 PF01040 UbiA prenyltransferase family YPK_RS20730 PF03737 Aldolase/RraA YPK_RS20750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YPK_RS20750 PF00529 HlyD membrane-fusion protein of T1SS YPK_RS20755 PF00664 ABC transporter transmembrane region YPK_RS20755 PF03412 Peptidase C39 family YPK_RS20755 PF00005 ABC transporter YPK_RS20760 PF06005 Cell division protein ZapB YPK_RS20770 PF00230 Major intrinsic protein YPK_RS20775 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YPK_RS20775 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YPK_RS20780 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YPK_RS20785 PF00175 Oxidoreductase NAD-binding domain YPK_RS20785 PF00970 Oxidoreductase FAD-binding domain YPK_RS20790 PF05656 Protein of unknown function (DUF805) YPK_RS20795 PF07305 Protein of unknown function (DUF1454) YPK_RS20800 PF00121 Triosephosphate isomerase YPK_RS20805 PF03466 LysR substrate binding domain YPK_RS20805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YPK_RS20810 PF02585 GlcNAc-PI de-N-acetylase YPK_RS20815 PF03737 Aldolase/RraA YPK_RS20820 PF00939 Sodium:sulfate symporter transmembrane region YPK_RS20835 PF00365 Phosphofructokinase YPK_RS20840 PF01545 Cation efflux family YPK_RS20840 PF16916 Dimerisation domain of Zinc Transporter YPK_RS20845 PF04754 Putative transposase, YhgA-like YPK_RS20850 PF07813 LTXXQ motif family protein YPK_RS20855 PF00486 Transcriptional regulatory protein, C terminal YPK_RS20855 PF00072 Response regulator receiver domain YPK_RS20860 PF00672 HAMP domain YPK_RS20860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS20860 PF16527 Two-component sensor protein CpxA, periplasmic domain YPK_RS20860 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS20865 PF02805 Metal binding domain of Ada YPK_RS20865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YPK_RS20865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YPK_RS20865 PF12833 Helix-turn-helix domain YPK_RS20870 PF00588 SpoU rRNA Methylase family YPK_RS20875 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_RS20875 PF06426 Serine acetyltransferase, N-terminal YPK_RS20885 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YPK_RS20885 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YPK_RS20890 PF02556 Preprotein translocase subunit SecB YPK_RS20895 PF00462 Glutaredoxin YPK_RS20900 PF00581 Rhodanese-like domain YPK_RS20905 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YPK_RS20905 PF01676 Metalloenzyme superfamily YPK_RS20910 PF01551 Peptidase family M23 YPK_RS20915 PF04748 Divergent polysaccharide deacetylase YPK_RS20920 PF00107 Zinc-binding dehydrogenase YPK_RS20920 PF08240 Alcohol dehydrogenase GroES-like domain YPK_RS20925 PF00155 Aminotransferase class I and II YPK_RS20930 PF01370 NAD dependent epimerase/dehydratase family YPK_RS20935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPK_RS20940 PF01075 Glycosyltransferase family 9 (heptosyltransferase) YPK_RS20945 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YPK_RS20950 PF00535 Glycosyl transferase family 2 YPK_RS20955 PF01467 Cytidylyltransferase-like YPK_RS20960 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YPK_RS20960 PF06827 Zinc finger found in FPG and IleRS YPK_RS20960 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YPK_RS20965 PF00471 Ribosomal protein L33 YPK_RS20970 PF00830 Ribosomal L28 family YPK_RS20975 PF04002 RadC-like JAB domain YPK_RS20980 PF04127 DNA / pantothenate metabolism flavoprotein YPK_RS20980 PF02441 Flavoprotein YPK_RS20985 PF00692 dUTPase YPK_RS20990 PF00440 Bacterial regulatory proteins, tetR family YPK_RS20995 PF00156 Phosphoribosyl transferase domain YPK_RS21000 PF01138 3' exoribonuclease family, domain 1 YPK_RS21000 PF03725 3' exoribonuclease family, domain 2 YPK_RS21005 PF08340 Domain of unknown function (DUF1732) YPK_RS21005 PF03755 YicC-like family, N-terminal region YPK_RS21065 PF03458 UPF0126 domain YPK_RS21070 PF03120 NAD-dependent DNA ligase OB-fold domain YPK_RS21070 PF01653 NAD-dependent DNA ligase adenylation domain YPK_RS21075 PF00625 Guanylate kinase YPK_RS21080 PF01192 RNA polymerase Rpb6 YPK_RS21085 PF04607 Region found in RelA / SpoT proteins YPK_RS21085 PF02824 TGS domain YPK_RS21085 PF13291 ACT domain YPK_RS21090 PF12105 SpoU, rRNA methylase, C-terminal YPK_RS21090 PF00588 SpoU rRNA Methylase family YPK_RS21095 PF00270 DEAD/DEAH box helicase YPK_RS21095 PF00271 Helicase conserved C-terminal domain YPK_RS21095 PF17191 RecG wedge domain YPK_RS21100 PF03616 Sodium/glutamate symporter YPK_RS21105 PF00860 Permease family YPK_RS21110 PF05170 AsmA family YPK_RS21115 PF00583 Acetyltransferase (GNAT) family YPK_RS21115 PF09500 Putative thioesterase (yiiD_Cterm) YPK_RS21120 PF02580 D-Tyr-tRNA(Tyr) deacylase YPK_RS21125 PF03631 Virulence factor BrkB YPK_RS21130 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS21135 PF00679 Elongation factor G C-terminus YPK_RS21135 PF00009 Elongation factor Tu GTP binding domain YPK_RS21135 PF03144 Elongation factor Tu domain 2 YPK_RS21145 PF00120 Glutamine synthetase, catalytic domain YPK_RS21145 PF03951 Glutamine synthetase, beta-Grasp domain YPK_RS21150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YPK_RS21150 PF00512 His Kinase A (phospho-acceptor) domain YPK_RS21150 PF00989 PAS fold YPK_RS21155 PF00072 Response regulator receiver domain YPK_RS21155 PF00158 Sigma-54 interaction domain YPK_RS21155 PF02954 Bacterial regulatory protein, Fis family YPK_RS21160 PF04055 Radical SAM superfamily YPK_RS21160 PF06969 HemN C-terminal domain YPK_RS21165 PF04220 Der GTPase activator (YihI) YPK_RS21175 PF01926 50S ribosome-binding GTPase YPK_RS21180 PF01367 5'-3' exonuclease, C-terminal SAM fold YPK_RS21180 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YPK_RS21180 PF01612 3'-5' exonuclease YPK_RS21180 PF00476 DNA polymerase family A YPK_RS21185 PF01323 DSBA-like thioredoxin domain YPK_RS21190 PF01636 Phosphotransferase enzyme family YPK_RS21195 PF06288 Protein of unknown function (DUF1040) YPK_RS21200 PF12804 MobA-like NTP transferase domain YPK_RS21205 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YPK_RS21210 PF00872 Transposase, Mutator family YPK_RS21240 PF00392 Bacterial regulatory proteins, gntR family YPK_RS21240 PF07729 FCD domain YPK_RS21245 PF07690 Major Facilitator Superfamily YPK_RS21255 PF00294 pfkB family carbohydrate kinase YPK_RS21260 PF05025 RbsD / FucU transport protein family YPK_RS21265 PF02705 K+ potassium transporter YPK_RS21270 PF17868 AAA lid domain YPK_RS21270 PF12592 Protein of unknown function (DUF3763) YPK_RS21270 PF07728 AAA domain (dynein-related subfamily) YPK_RS21275 PF05762 VWA domain containing CoxE-like protein YPK_RS21280 PF03590 Aspartate-ammonia ligase YPK_RS21285 PF01037 Lrp/AsnC ligand binding domain YPK_RS21290 PF00258 Flavodoxin YPK_RS21295 PF01134 Glucose inhibited division protein A YPK_RS21295 PF13932 GidA associated domain YPK_RS21300 PF02527 rRNA small subunit methyltransferase G YPK_RS21305 PF03899 ATP synthase I chain YPK_RS21310 PF00119 ATP synthase A chain YPK_RS21315 PF00137 ATP synthase subunit C YPK_RS21320 PF00430 ATP synthase B/B' CF(0) YPK_RS21325 PF00213 ATP synthase delta (OSCP) subunit YPK_RS21330 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPK_RS21330 PF00306 ATP synthase alpha/beta chain, C terminal domain YPK_RS21330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_RS21335 PF00231 ATP synthase YPK_RS21340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YPK_RS21340 PF02874 ATP synthase alpha/beta family, beta-barrel domain YPK_RS21345 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YPK_RS21345 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YPK_RS21350 PF00132 Bacterial transferase hexapeptide (six repeats) YPK_RS21350 PF12804 MobA-like NTP transferase domain YPK_RS21355 PF01380 SIS domain YPK_RS21360 PF12849 PBP superfamily domain YPK_RS21365 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS21370 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS21375 PF00005 ABC transporter YPK_RS21380 PF01895 PhoU domain YPK_RS21390 PF00497 Bacterial extracellular solute-binding proteins, family 3 YPK_RS21395 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS21400 PF00528 Binding-protein-dependent transport system inner membrane component YPK_RS21405 PF13419 Haloacid dehalogenase-like hydrolase YPK_RS21410 PF00860 Permease family YPK_RS21430 PF12241 Trans-2-enoyl-CoA reductase catalytic region YPK_RS21430 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase YPK_RS21430 PF07055 Enoyl reductase FAD binding domain YPK_RS21435 PF01926 50S ribosome-binding GTPase YPK_RS21435 PF12631 MnmE helical domain YPK_RS21435 PF10396 GTP-binding protein TrmE N-terminus YPK_RS21440 PF14849 YidC periplasmic domain YPK_RS21440 PF02096 60Kd inner membrane protein YPK_RS21445 PF00825 Ribonuclease P YPK_RS21450 PF00468 Ribosomal protein L34 YPK_RS21490 PF04829 Pre-toxin domain with VENN motif YPK_RS21490 PF05860 haemagglutination activity domain YPK_RS21490 PF13332 Hemagglutinin repeat YPK_RS21490 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS21495 PF05860 haemagglutination activity domain YPK_RS21495 PF13332 Hemagglutinin repeat YPK_RS21495 PF13018 Extended Signal Peptide of Type V secretion system YPK_RS21495 PF04829 Pre-toxin domain with VENN motif YPK_RS21500 PF01381 Helix-turn-helix