        pqiB NONE
        pqiC    6458 ..    6498 + -17.2  -5.64421   CTTAAATAAATCTAA CCCTCTTTCGGTAGTCATA CTTA TATGA-TACCGGAAGAGGG  TTTTTTATTTAAAAT 100 49
         rmf    6896 ..    6929 +  -8.9  -4.54753   TGTCAGACTAAGGGA     TAACCTCCGCTTTAT GCGT ATATTGCGGAGGTTG      TTGTTTTTACTCTTT  88 50
        matP   12185 ..   12199 + -12.8  -5.00616   GCATGATAAAAAAAA               CCCCGC AAT GCGGGG               TTTTTTACGAAAGGA 100 122
CH54_RS00065   15288 ..   15298 +  -6.8  -3.16689   ATCGTTGAGCAACCT                 CAGC GTA GCTG                 TATTGGTCAGCTTTT  57 287
        helD   20076 ..   20097 + -13.1  -3.14132   ATGCTGCCCATAGGG           TGAGCCTCA GGGA TGAGGCTCA            TTAGTCCCCAGGAGC  91 179
CH54_RS00095   22563 ..   22581 + -11.7    -4.431   ATTGGGTATAAAAAA             CCCGGCA ACCAA TGCCGGG             TTTTATCAATCAGTG  95 163
CH54_RS00110 NONE
        yccX   25456 ..   25470 +  -7.2  -3.43151   CGGTTGTACAGTGAA               TCATCA TCA TGATGA               TTAATTCATCATTCG  65 516
CH54_RS00125   25921 ..   25934 +  -3.9  -3.89587   TATAAAAACCCCCAA               GATTT TAAA AAATC                ATTTTTTATTACTAC  57 289
       cas1f NONE
       cas3f   31272 ..   31286 +  -7.1  -4.13995   CGATTGAGTGCGCCG               CTGCC TGTAC GGCAG               TTTAGTTTGTAAAAC  76 34
CH54_RS21855 NONE
        csy1 NONE
        csy2 NONE
        csy3   35009 ..   35025 +  -5.1  -3.26471   AGGCGAATAAGGAGG              GGGAATG GAT CATTACC              TTAATATACGCGTGC  53 31
       cas6f   35629 ..   35645 +  -5.3   -3.1462   GTTGGCCGAGAAGAT              TAAAAAA GCC TTTTTTA              TGATTTTGGTGGGTT  53 84
        nrfA   40977 ..   41006 +  -9.3  -3.01712   GAGCCAGTAAAAGGC       GTTCCGGTGGG-GT AAA ACACCTGCCGGAGC       TATTCCAGAGACAAA  69 31
        nrfB NONE
        nrfC NONE
        nrfD   43227 ..   43240 +  -2.3  -2.66316   TTTCATTCTTTATGC               CGGTC AGAT GACCC                TGGTGTGATAGGGAA  40 4
CH54_RS00180 NONE
CH54_RS00185 NONE
        nrfF NONE
CH54_RS00195   47006 ..   47022 +  -3.8  -4.38876   AGTTTATCAAAATTA              CATTAA TATGT TTAATG              TTTATATGTTTTTGA  64 203
CH54_RS00200   48351 ..   48403 +  -7.2   -3.0976   TGTGACCAAAAAGTA ATCCTATAATGTATTCGCTGTAAT AGATG ATTACAGCGAATACAAAGTACGAC TCTTGCCGTCTTGAC  63 57
CH54_RS00225 NONE
        mdoH   59667 ..   59685 +  -7.4   -5.4492   AAGTAAAATAAAAAA             CGGGCA TATAAAT TGCCCG             TTTTTTGTGTATATA  93 46
CH54_RS00235   60303 ..   60324 +  -4.3  -3.26545   TCGCCTCCAGCATGG           CATCGACCA CCGG TGGGCGAGG            TTGCTGATGTGTGCG  48 330
CH54_RS00245   61066 ..   61082 + -10.8  -3.29739   TTTGAACATAAAAAA              CCCGCC ATTAA GGCGGG              TTGGTGTAGCTTAAC  80 47
CH54_RS21860   66999 ..   67009 +  -2.4  -2.80474   AGCCGCTAAAGATGT                 GCCG TGG CGGG                 GTTTCAGGTATTATA  41 32
CH54_RS00275   68256 ..   68286 +  -4.6  -5.82388   GTGCTATTAAAATAA       GGCGTTGTCGGTTA TTT TATCCGCTAGCGTC       TTTTTTTTGCCATTT  95 47
CH54_RS00280   69401 ..   69419 +  -5.2  -2.87206   CATATTGTAACTTAA             CATCTGAG GGC CGCAGGTG             ATTTGATGCCTGTTG  50 31
CH54_RS00315   74777 ..   74792 + -11.8   -4.1964   CGGCGAAATAAAAAA              CCCGCC AGAT GGCGGG               TTTTGCAATATTAGG  95 47
        rluC   79806 ..   79828 + -13.6  -3.68366   AGTATTACGCAAGAA           TAGCGCTATT TAA AATAGCGCTA           TTAGTTTTACAGTCA  95 13
        yceD NONE
        rpmF   81312 ..   81329 +    -2  -3.49475   ACTTGCTAATCTTTA             G-CAAGG CGATA CCTTGAC             TTGTCTAACCCTAGC  47 46
        plsX NONE
CH54_RS00350   83295 ..   83305 +  -2.4  -2.84988   CGGCGGCTTTACCTG                 GGGC TCG GCGC                 TGGTTCGCTTTTGAT  41 1
        fabD NONE
        fabG   85171 ..   85184 +  -2.3  -4.25848   TACACTACGAAAACC               ATCGC GAAA GCGAG                TTTTGATAGGAAATT  56 143
        acpP   85472 ..   85497 + -11.9  -5.78622   AAGTTTGGATAGATA         GTTAGGCGGTC ATTT GACCGCCTAAG          TTTTTTTTGCCCTAG 100 54
        fabF   86940 ..   86967 + -13.6  -3.90112   GTTTGTCAGCAACCT        TAAAAGACCCGG TTTT CCGGGTTTTTTA         TTTGCTTAGCAAGCA 100 186
        pabC NONE
        mltG NONE
         tmk NONE
        holB   90695 ..   90709 +  -2.2  -2.61106   TCACTTTAATTGAGT               TTAATA TGT TGTTAA               TAGATTCTCACTGTC  40 32
CH54_RS00395   91711 ..   91727 +  -5.1  -2.71011   TCGTAAAAATTAAAG              GGGTG CTTTAGA CACCC              TGATTCGCAAAGGCT  49 236
        ptsG   93273 ..   93290 + -14.1  -5.80817   CTGGGGAGTGCAAAA             GGGCGGC GAAA GCCGCCC              TTTTTTTGTATTCAG 100 48
CH54_RS00430  102340 ..  102350 +    -4  -2.59431   CTCCATTTTTATCAC                 TTTC AAG GAAA                 TGCGTTATGGCCGAA  45 84
        hinT  102720 ..  102740 +  -3.9  -3.63367   AAGTAATTGAGGTAA            GCCTATGCG CCC TGTAAAGGC            GTTTTTATTACCGCA  54 35
CH54_RS00440 NONE
        lpoB NONE
        thiK NONE
        nagZ NONE
        ycfP  106337 ..  106375 + -14.2  -4.87665   TGATTCTGTGCAATT  TGGCCTGAAAAAAG-AG TGTCAT CTGCTTTTTTCAGGCCA   TTTTTATGACTAAAA 100 94
CH54_RS00465  108182 ..  108207 + -14.7  -5.76949   TCCCCCCACTAAAAA         CCGCTGCCCGT TAAT ACGGGTGGCGG          TTTTTTTTGGCGCTA 100 244
CH54_RS00470  109208 ..  109243 + -17.8  -2.54568   CGAGTGGCATTAACA    TTAGCGCGGGTTTC TCACATCT GAAACCCGCGCTAA     CATTTTGATATTAAG 100 121
        lolC NONE
        lolD  114796 ..  114823 +  -7.6  -3.77831   GGTGGGGGCGCAATA        GTGGCGATGGGC ATGG GCGTTTCGCCAC         TTTCACTGTTAATCG  68 25
        lolE NONE
        nagK NONE
        cobB  117963 ..  117986 + -13.2  -3.30554   TACCCTGCTTAATTG          GTGCCGC-AGC GTT GCTAGCGGCAC          TTAATCATTAATTCA  93 42
        pepT  119519 ..  119537 + -11.7  -4.57353   TTGTCAGCAGTCTGA             TGCCCCG TTTAT CGGGGCA             TTTTGTGTAATAAGA  95 181
         icd  129618 ..  129643 + -13.3  -5.07486   CAAGTTAAGCTATAT         CTCACGGGGGC GCAA GCTTCCGTGAG          TTTTTATTCCCCCTA 100 46
CH54_RS00560  130777 ..  130804 + -13.6  -2.82933   CTAAAATATTTCTCA        TAGCCAGTCAGT GTAT ACTGATTGGCTA         TGTCATAGATTAGGG  91 51
CH54_RS00565  132158 ..  132179 + -11.6  -5.33866   GTTAAATCTAGAGAG           CAGGTGCC CACAGT GGCACCTG            TTTTTTATCCATTTA 100 60
CH54_RS00595  140978 ..  140996 +  -4.5  -4.02736   TTGTATACGACTGGT             TTGCCGG ATTGG CGGGCAA             TTTCTGCTGTGAATT  62 314
CH54_RS00605  142335 ..  142358 +   -11   -2.7614   GTTGGTATTCAACAA          CAGCCATAGC ATCG GCTCTGGCTG           CTATTATTTGATATC  77 70
CH54_RS21865  143394 ..  143409 +  -3.2  -3.53091   TGCAGTGGGCAATAC              CCAGCA TTCG TGGTGG               TTTAGCCCCGGAAGT  50 371
CH54_RS00630  146330 ..  146341 +  -5.8  -3.66365   TACTGATATTAAAAA                GCGA TATC TCGC                 TTAGTTTGTATGGTC  60 133
CH54_RS00645  149746 ..  149763 +  -2.1  -4.37544   ACGGCACCCTCTTCA             TAATG-AC TTC GTGCATTA             TTTATCTTGTTATAC  59 138
CH54_RS00650  151433 ..  151450 +  -2.7  -3.14522   TATTGAGTGATAATA             GTC-TGGG AAC CCTAAGAC             TTGACTATGACTTGC  44 52
CH54_RS00655  151797 ..  151811 +  -4.2  -3.75665   CAATAACGTTGATTG               TGATCC TAT GGCTCA               TTTAATGCGCTATAG  54 6
CH54_RS21870  152103 ..  152122 +  -9.4  -2.78032   CATGCAAGGGCAAGG            CGATATTG AGGT CAATATCG             GTATTTTGCCGGAAA  65 122
CH54_RS00675  153506 ..  153519 +  -2.3  -4.87665   ATTGGCATTGTAAGC               CGATG CCCG CAGCG                TTTTTCTCACTGCCA  70 230
        mgrB  154026 ..  154058 +  -4.3  -4.39877   ATTATTCATATATAT      AATAACTAATGAAAA CTA TTTACATTGGTTATA      TTTATTGATTGTTAA  66 50
CH54_RS00685 NONE
CH54_RS00690 NONE
CH54_RS00695 NONE
CH54_RS00700  156891 ..  156921 + -11.9  -3.77491   GAAATAACGCTAAAA       TCGCTGGGCAGAA ACAAA TTATGCCCGGCGA       TTGCTTTCTTTCGTA  89 46
        cspE  159111 ..  159126 +  -7.5  -5.95539   TTTTGCTGTTAAAAA              CCCGC CTTTGT GCGGG               TTTTTTTGTTTCAGA 100 48
        ftsI  161846 ..  161862 +  -5.1  -3.90729   GCTTCTTTAGACTAA              TGCCG CGTCTGC CGGCA              TTTCTGGCGGTTATT  61 78
        rlmA  162811 ..  162823 +  -9.1  -2.82766   TGACGAGCGCATAAC                TCCCC TGA GGGGA                ATGTTATTTTAATAG  68 75
CH54_RS00745  168360 ..  168381 +  -5.2  -6.17292   TAAACCAAAAAAAAA           CCGCAATTC TTTTT GAAT-GCGG           TTTTTTTTTGCGTTT 100 74
CH54_RS00775  175179 ..  175204 + -13.3  -5.17353   AAGAGTTTCAGCTAA         TGCGGGTCATC TTAA GGTGGCCCGCA          TTTTTTAATGGATAT 100 56
CH54_RS20405  175990 ..  176007 + -12.7  -3.14683   TTTCACTGTGCATAA             GGGGAGC CGTA GCTCCCC              TTAATGAAAACGTCT  85 62
CH54_RS00795  180351 ..  180375 + -15.1  -3.18264   GCTGTTCAATGCCAA          TAAACCCGCCG TGA TGGCGGGTTTA          TTCATCAGTGCCAGA 100 54
        dbpA  183288 ..  183303 +  -3.3  -3.50869   CATCGCCCCGACAAA              TCACA TTATAC TGTGA               TTATGTACAGTAATC  50 66
CH54_RS00810  183651 ..  183672 +  -2.2  -3.53224   CAAACCTGATGAAAA           TCAAGCGG CTTAAT CTGCCTGA            TTTCGGCAGGAAGTG  47 13
        yqfB  184017 ..  184045 +  -2.5  -3.49618   TCAGTGTTAATTAAA        TAGCGTTAACA TATTAAT TTTTAGCGCTA        TTCGTTCTGTAACCC  48 31
        yebF  184504 ..  184534 +  -6.9  -4.08058   TTAAGCTAATCACAA      CAGGTGCTGGCGTA AAGG TAT-CCTGCACCTG       TTTATCATGTTGCTT  71 57
CH54_RS00825  186800 ..  186829 + -12.2  -3.21225   GGTCAGCATCCAGCG       CAGGTAGTCCGG ATCTTG CCGGGCTATCTG        TTCAATACTTTTTCC  82 111
         pip  188880 ..  188903 +  -9.6  -3.14693   ATTCTCATCGCCAAA          CTCCCGCA GACCCTGG TGCGGGAG           TCTCTTACTCATGAC  73 43
        ftnA  190071 ..  190113 + -14.5  -5.28561   GCTTGATTTGAACTC GCCGCAGTTTCTA--TCCACT CTT AGTGGAAATAGAAATTGCGGC TTTTTATTGTCTCTT 100 48
        yobA NONE
        copD NONE
CH54_RS00860  192381 ..  192407 +  -7.4  -5.77856   AGAGCCATTTCCCTA         GACCGAATAT AGGAATC GTATTCGGTC         TTTTTTTAATTTGTT 100 258
CH54_RS21155  194335 ..  194381 + -17.1   -3.4647   TTTTTGGGAAAAAGG TGAAAATTGTCTCTTGA-ACAG AACA CTGTATCAAGAGACAATTTTTA TATTTAGCTATTCGG 100 238
        rluF  196767 ..  196792 +  -9.9  -2.52451   TTTTTGTGAACCTAA         TGGCGTTGT-AT TTT ATAACAACGCCA         AATTTTGAGTTATTT  70 83
CH54_RS00915  201318 ..  201345 + -12.2  -2.87132   TGTTTTTCGGCTCTG        GGCTGCGATATAA ATG TTAT-TCGCAGCC        TATGTACAGGCGAGA  81 53
CH54_RS00920  202742 ..  202759 +  -4.1  -3.78778   GAGAAACTCTTGAAA             CCAGC ATAGTACG GCTGG              TTATTACTCTAATCC  54 321
CH54_RS00925  204281 ..  204295 +  -2.8  -2.54523   TACGCGAGTAAAACA               TGTGAC CAT GTCAGA               TCCATTACACTATAG  41 172
CH54_RS00930  204867 ..  204905 +    -4  -3.36991   TAACCTGCCTACCAT  TTCACTACGCCAAGCATG CCAGC CATGCA--GCGTGGTGAA  TGTTTCCCCCTCGTA  50 62
CH54_RS21990  205337 ..  205348 +    -3  -4.60797   AAGTAACACCAAAAA                CATT TTCC AATG                 TTTTGTATGTAAGCG  65 106
CH54_RS00935  205979 ..  205990 +  -5.8  -3.53343   AGTTTGTGATGCAAG                CAGC AAGC GCTG                 TTTAGCAGCCAGCTT  58 47
CH54_RS00985  217233 ..  217252 + -10.7  -3.04322   TGGTGATAGCGATTA            GGGCAGC ACATTC GCTGCCC             TGTTAGCCAGTTGAA  78 25
CH54_RS01000  221859 ..  221878 + -12.2   -3.1552   GTGGCAATTGCTGAT            GGCGTCAT TATA ATGACGCC             TGTTCATGCCTGCGC  83 53
        proQ NONE
         prc  224768 ..  224788 +    -9  -6.11019   GGATGATAAGCATAA            TCCGGGTT CTTGC AGCCCGGA            TTTTTTTTACTTTTT 100 46
        htpX  226088 ..  226115 + -12.8  -2.63596   TTCGCGTTAAAATTA        GCGGAGAGTGTC GCAA GATATTCTCCGC         TAATGTCAGATAAGA  81 156
         ogl  230200 ..  230226 +   -16  -3.88498   TAGTTGAGTTTTACA         CTAGCCTCTTTC ATG GAAAGGGGCTAG         TTTGCTGTCTGCAAG 100 38
        kdgR  231260 ..  231281 + -11.6   -5.5353   TTCCCATATTCCAAA           CGGCTCCT CTCATC AGGAGCCG            TTTTTTATTAGTATC 100 121
CH54_RS01040  232458 ..  232479 + -10.2  -4.10161   TTTTAAAAACAAAAA           GCCAGTCA CAGATA TGACTGGC            TTTTGAGGACTCATC  86 192
CH54_RS01095  244646 ..  244675 + -10.8  -3.86015   CTGTAAAACGAATTC       GGGCGGTT-GAGT TACTC ACTCTGACCGCCC       TTTATCGCCAAGATA  86 35
CH54_RS01105  246228 ..  246244 +  -8.7  -5.36441   AGATCATAATGAAAA              GGTCCAT AAT ATGGGCC              TTTTTTCTATCCCCC  95 78
CH54_RS01135  252092 ..  252102 +  -6.8  -2.72661   TGTTAGGTTATGCAA                 CCAC AGT GTGG                 TAATTGGCAATAATA  56 114
CH54_RS01145 NONE
CH54_RS01150  253927 ..  253937 +  -3.2  -2.88023   CTTATCTCTCCGGAG                 GCTA GCA TGGC                 ATTTACTGATAATGA  44 64
CH54_RS01155  254387 ..  254399 +  -4.8  -3.43328   GTAAAGTTCGAGGCC                CGAC AGAAC GTCG                TTAGTCTGTTTCATC  52 237
CH54_RS01165  255780 ..  255795 +  -3.2  -4.63932   CCTAGCCAATTTTCC              GGCATA AAAA TTTGCC               TTTTATTACGCCATC  64 159
CH54_RS21875  256474 ..  256487 +  -8.1   -3.2128   TGAGAGTCAAGCTCA               GCAGC CAGT GCTGC                TTCGGTTAACTGTTT  65 330
        thrS NONE
        infC  263968 ..  263991 +  -2.5  -3.08992   CTCAAGTAACAGGCT          TCTCTATGCT TGCAT AGCA-AGAGG          TCTGTTCGCCTAGCT  43 45
        rpmI NONE
        rplT  264800 ..  264817 +  -8.4  -6.12458   AAAAATAGCGCCGAA             GCCTCC CATCGT GGAGGC              TTTTTTGTTTTTTTA 100 189
        pheS NONE
        pheT NONE
        ihfA  268807 ..  268822 + -11.8  -5.20333   TTTCCCGAAACAAAA              GGCCGC GCAA GCGGCC               TTTTTCTTATCAGTA 100 46
CH54_RS01225  269686 ..  269721 + -14.4  -4.68724   GTTTTTGCAGATGCT    TATTAATGAAAAGTCT CCCA AGGCTTTTCATTAATA     TTTTATATTCAGTCA 100 46
        btuC  271815 ..  271827 +  -2.6  -3.67611   CGTGTAAAGTGATCA                GCCT TACAT GGGC                TTATGTTCCGGTAGG  50 29
CH54_RS01240  272413 ..  272427 +  -2.8  -3.57144   GCTATTACTCGGGCC               TTAGCG GCT CACTAA               TTTACGGATGAAAAA  48 11
        btuD  273270 ..  273285 +  -3.2  -3.63228   CGGCCGGTATCTGTC              GTTTCG ATTT CGATAC               TTCCTTTCTGATAAA  52 79
        arnB NONE
        arnC NONE
        arnA NONE
        arnD NONE
        arnT NONE
        arnE NONE
        arnF  281244 ..  281258 +  -2.1  -3.56161   TACTGATATCCTTCA               TTAGC AACTA GCTGA               TTGTATAGTGAATTG  47 271
CH54_RS01285  281782 ..  281803 +    -8  -3.06796   GTGAAACATCCCCTT           CACCCTTG AAGCCG CAGGGGTG            TTAGCTGCGCTCACG  63 37
CH54_RS01290 NONE
CH54_RS01295  284505 ..  284534 +  -6.3  -2.61831   TCCAGCTAGTCAGAA       TAGGTGGCAGGAG GACT TTCCCGCCACCCG        AGTTTTTCCCCTCAG  54 32
        ppsA  293878 ..  293897 + -13.6  -3.82865   AGAGTATTTTCATTA            TCCGCAGC GATG GCTGCGGA             TTTGAATGTTATTTG 100 70
CH54_RS01340 NONE
CH54_RS01345  299922 ..  299948 +  -5.2  -3.36505   CTGCAAAACAAACGG         TTGAAGTGATAA TTA TTATCACTACCA         TTGTCAATAAGCTGT  54 470
        sufA NONE
        sufB NONE
        sufC NONE
        sufD NONE
        sufS  305390 ..  305415 +  -6.7  -2.94232   TGAACGTAGCTAATA         TCCCTGCGGCT TCAA GGACGCGGGGG          ATTATTTAGGAAGCA  59 135
        sufE  306169 ..  306187 +  -8.8  -3.05536   GTTCATCGGGATTAT             GAGCCTCA CTC TGAGGCGC             TGTTCAACATGGTTT  67 337
CH54_RS01380  307546 ..  307564 + -14.6   -4.8622   GCAAGATAAAAAAAA             TGGCGCAC AAT GTGCGCCA             TTTTTCATTCAGGAA 100 202
CH54_RS01415  313598 ..  313616 +  -6.6  -2.52896   ACATCCGTTCAAATC             GCGGTGAG TAA TTCTCCGC             TAAATTCGGCCATGC  52 209
        punR  317613 ..  317625 +  -2.7  -3.76968   GCGGTCGGGCGGTGT                TTTTG CGT CAGAA                TTTGGTGCATAGCTT  51 391
CH54_RS21410  318800 ..  318816 + -10.8  -3.66301   ATGAAGCCATTAGTA              GGGCGG TTAAC CCGCCC              TTAATTATTTCTACT  83 58
CH54_RS01450  321481 ..  321498 +  -9.1   -5.1675   GTATAAAAAACAAAA             GGTGGCT TGCT GGCCACC              TTTTTTAATGGGTCA  90 56
CH54_RS01480  326862 ..  326874 +  -2.7  -4.31688   CAACCTTCATTATTC                TGATG CGT CATTA                TTTTGCCTTAGTGTT  60 23
CH54_RS01485  327909 ..  327935 + -12.2  -2.53244   CTTAAGTGAGTTCTC         TGCGCCAGCGAG CTT CAGGCTGGCGCA         ACTTTATCTTTCTCA  81 36
        rovA  331757 ..  331781 + -15.1  -4.42653   TAGCCGTAAAAATAA          GCCAGAGATCG TTA TGATCTCTGGC          TTTTATCGATGACAT 100 83
        anmK NONE
CH54_RS01520  334291 ..  334332 +  -9.7  -3.00138   TGTTGCTGGCTCAAG GTGATTGTGATTCTGCTGCT GCA AG-GGCAGAATAATAATCAC TGCTTTCCTGTGCAT  72 64
        pdxH  335030 ..  335048 + -10.2  -4.40601   AATGATGAAATTCTG             GCGCTCGT GCG GCGGGCGC             TTTATTCTATGCCTT  90 42
        tyrS  336422 ..  336443 +  -9.5  -5.55664   AAGAGTAAAAGAAAA           TAAGGGGCA AGTG TGCTCCTTA            TTTTTTTGCTGATGG 100 39
        pdxY  337355 ..  337375 + -12.6  -3.73953   TAATCTGTTGCTAAA            GTGCCCCT GATTA AGGGGCAC            TTTAATCCCGCTAAT  90 38
CH54_RS01555  339853 ..  339868 + -10.4  -3.04398   GTTAAACAAAAAAAA              CGCTCC CGAA GGAGCG               CTTTTAACCAACCAG  75 53
CH54_RS01565  343315 ..  343327 +  -6.9  -3.32844   TGGGTTATCTAACTG                CGCGG TAA TCGCG                TTATAGGCTGACAAA  59 460
        ytxA NONE
        ytxB  351827 ..  351838 +  -7.2  -2.70932   AATCCTAACAAGCTG                GCGG CCTT CCGC                 TGATTAAACCGCGCC  56 166
        pspA  353688 ..  353709 +  -6.5  -2.62184   GAAAAATACCGGGCG           GGCCGTC GGGAGAAA GGCGGCC            TGCTATGACGACAAC  54 58
        pspB NONE
        pspC NONE
        pspD NONE
CH54_RS01640 NONE
CH54_RS01645  357586 ..  357597 +  -3.6  -4.28111   ACTTCATAAGTGCCA                GCCT ATTG GGGC                 TTTATTCATAATCTA  59 499
        tyrR  360084 ..  360108 +  -7.8  -4.25401   GATTGCTATAAAAAA         CGGCTGCACCC AGAT GGGC-CAGCCG          TTTGTATTAAATTTA  77 103
        ycjG  362134 ..  362148 +  -2.8  -3.02829   ATAGCACCACATCTC               GTGC ATCCGCC GCAC               TATTCCAACGGTATA  43 366
CH54_RS01680  364445 ..  364475 + -14.9  -4.11235   TAATGTTGATAAAAG       CATAATCCGCCAT CATAA GTGGCGGATTATG       TTTATATAATGATTA 100 73
CH54_RS01685  365010 ..  365028 +  -5.4  -3.55122   GCCACCAATGAGTGC             TTTCATTA ACG TAATGAAG             TTGGTTTCCATAATC  56 277
        zntB  366519 ..  366543 +  -9.4  -5.91981   ACATAATTGTTACGA          TGCCGATGTT ATCTC AATATCGGCA          TTTTTTTTGCATTTT 100 223
CH54_RS01715  373327 ..  373339 +  -7.7  -3.33969   CCAAACTTTTTTTCG                GTGAC AAT GTCAC                TTCTAAAGTGAGTTC  64 173
CH54_RS01725  374698 ..  374710 +  -3.3   -3.4398   CGGTAATAATATTCG                GGCAA TGT TCGCC                GTTTTTCAATTGGGC  48 307
CH54_RS01735 NONE
CH54_RS01740 NONE
CH54_RS01745  379666 ..  379678 +  -6.9  -4.70659   GTTTGCCGGTAATCA                GGCCT TCA GGGCC                TTTTTCGGTGTAACG  80 389
        hrpA  384313 ..  384345 +  -8.4  -2.71791   GATTAATGAATATCA      CTCCGCGCCTGG CCTAATTTT TTGGGCGCGGAG      CTTTCCCCCCCCACT  65 42
CH54_RS01760 NONE
CH54_RS01765  385398 ..  385418 +    -4  -3.34398   GTGACTGCCAAAGCT            CGGTTATC CGCGA GATAACGG            TCTTTAGCGGCGGGA  50 145
CH54_RS01780  388073 ..  388083 +  -3.2  -3.14683   AGCCATTACGGTAAT                 TACC TTC GGTG                 TTAATCCCCAGATAT  46 484
CH54_RS01800  392211 ..  392238 +  -9.2  -3.38218   CAACCAATACTCAAA        TGGACA-GCCAGT GTT ACTGGCGTGCCCA        TTGTCGAGTGTTTCC  72 76
        pntA  397118 ..  397131 +  -5.3  -2.94144   ATGAATCCCGATGAG               TTGAC GCCC GTCAA                TGATTTGGGTGAAAG  51 108
        pntB  398636 ..  398653 + -12.7  -4.96468   GTAGTCTTTGATTAA             GGGCCAC CTCG GTGGCCC              TTTTCTTTGGATTTA 100 48
CH54_RS01845 NONE
CH54_RS01850  402955 ..  402985 +  -6.3  -2.60802   AATGTCATTAAATCC      CGCTAT-ACTGTAT GAAT GTACAGTTATGGCG       TGGGTTCGTATCTTT  54 44
        sbmC  403533 ..  403558 + -19.1  -3.46602   TAATAAATTAGCGTT         GCAGCCGAGCT GGCT AGCTCGGCTGC          TTATGGTGTCAGCAG 100 38
CH54_RS01865  405475 ..  405492 +  -2.7  -4.40804   GCTGCGCGCTAACGG             TGGC-CTG ATT TAGCGCCA             TTTTGTGGAATGGTG  60 13
        phoA  407159 ..  407181 +  -4.9  -5.58522   CCTATTGGTAGCAGA          TCCCAGTGCA GTAA TG-GCTGGGA           TTTTTCTTTTCTGTC  90 48
CH54_RS01875  410014 ..  410035 +  -2.3  -3.07013   ATATATCAGCGGCAC           TCCTTATTT GAAA GAAAAAGGA            TGTGTTAGGGGGGTG  42 15
        yjjG  410825 ..  410857 + -13.5  -2.98966   TATTCCATGAAATAA      GGGCTGTTAACGATA TCG TCTCGATAACAGCCC      CTTGTATTTTCGTCA  93 49
CH54_RS01895 NONE
CH54_RS01900  415223 ..  415249 +  -9.4  -3.79906   GCATTAATGACGATG         CCCCCTCCTG CTGATTA TGGGAGGGGG         TTATTATAGCGATGA  83 56
CH54_RS01920  423930 ..  423965 + -12.8  -3.26596   TAATATCCCGTGCAA    TAGCGAGCAAGGTATT CGTT GATATTTTGCTCGCTA     TTCAATTGATTTAAA  85 38
CH54_RS01925 NONE
CH54_RS01930  426055 ..  426090 + -11.3  -3.35813   TTGCCGTAACTGTGA   CGAGC-ACCGGGCAATGG CAC CCAT-GCCCGGTTGC-CG   TTGGTTAGCCTCGGG  85 45
CH54_RS01935 NONE
CH54_RS01940  427740 ..  427754 +  -5.6  -3.71848   GCAATCCAGCACTTC               GGGCGT TTT ACGCAC               TTCTTGCTCGAAAGC  59 236
CH54_RS01950  429614 ..  429652 +  -6.1  -4.70266   ATCAACACTATAGCT  ATGGCCGGAATGGAGTACG ACG CGTAATCCA-TCC-GCCAC  TTTTTCAATGCTGTT  78 491
        norR  433958 ..  433970 +  -5.5  -4.07885   TGAGCGCTTCGGTTC                TTGCC GCA GGCGA                TTTTGGCAGGAAATG  64 519
CH54_RS01975  436181 ..  436201 +  -3.3  -2.82015   AACAAACTTTTTTAT            TCAATTATC AAG GAAGATTGA            TGTGATAAATCTCAC  44 50
CH54_RS01980 NONE
CH54_RS01985 NONE
CH54_RS01990 NONE
CH54_RS01995  442092 ..  442108 + -11.5  -4.43681   GCTTATTCTTGAAAA              GCCCGTG TAG CGCGGGC              TTTTACTCTTCAATA  93 80
CH54_RS02020  445931 ..  445943 +  -2.7  -2.77999   GCATCTAATTAGATA                TGAAT GGA GTTCA                TGATGTTACTGGCTG  42 57
CH54_RS02025 NONE
        arsC  447937 ..  447948 +  -3.6  -4.33165   CTATACCCTTGATCG                TGGC ATAA GCCG                 TTTTCATGGATTTGA  63 234
        hisC  450153 ..  450182 +  -4.5  -3.71745   ATGTAAGCCAAGGAA       GGGTAATAC-ATAA TAT TTATAGTATTGCTC       TATTTTGAATAGTTG  56 44
CH54_RS02045  451904 ..  451929 +  -5.5  -2.69151   ATCCATCCGAATTTT         TAGTGG-ATACC CAA GGTTTGCCACTA         TCCTGTCTAGCACAC  51 317
        ydfG  453989 ..  454007 + -11.7  -2.59569   AGATAATATCGTGTT             TGGGGCG TTGAC CGCCCCA             CTCTTAATTTACCCG  81 59
CH54_RS02075 NONE
CH54_RS02080  455332 ..  455353 + -12.3  -3.90889   AACGTTTTGATTTTA           GGGTGCACT TTTC GGTGCACCC            TTTCCGTTTATGCTT  93 39
        clcB  457511 ..  457526 +  -2.5   -3.9281   GGTGCAGGTAAACGC              TCGCG TAACAT TGCGA               TTGTTTCAGCATAAT  52 291
CH54_RS02105  462097 ..  462113 +  -5.9   -2.7752   ATCAAATAAAGTCGA              TGTGATG TCA CATTACA              ATTTGACGTCCTCTC  52 47
CH54_RS02110  462673 ..  462701 +  -3.9   -5.7946   TGATTTTTGACTAAA       GGCTA-ACGGCA TTCATT TGCCATTTAGCC        TTTTTTTATTCCCAG  88 46
         tus  464158 ..  464170 +  -4.9  -3.86252   TAAATAAATCTAAGC                CTATT TTC AATAG                TTCTATTTGATAGGA  59 230
        manA  467913 ..  467930 +  -3.4  -3.52374   CGTGTTTACAACGGA             GGGTGA ACGAAC TCACTC              ATTTTGTTGTCTATT  50 20
CH54_RS02135  469732 ..  469749 + -14.1  -5.64274   AATTGAAATTGCGAA             CGGGGCC TGAT GGCCCCG              TTTTTTTATCCATCA 100 79
CH54_RS02140 NONE
CH54_RS02145  473145 ..  473155 +  -2.4  -3.21416   AACCCTTCAGCAGCA                 TCCG CCG CGGC                 TTGCTGCTGACCATC  43 378
        malX  475906 ..  475917 +  -5.8  -3.09987   CTTAGGATGGTAATT                CGCT AAAT AGCG                 TTGCCTCAATATTAA  54 36
CH54_RS02165  477259 ..  477277 +    -6  -2.88667   CATCCAGTTTTTACA             GGGGAAAT AGC ATTTCCGC             TCGGTTTTTATCGGC  55 16
         add  478454 ..  478480 + -17.4  -4.48713   GAATACTAACAAAAA         CGCCCGTGTTTC AAT GAAATACGGGCG         TTTCTTATTGATAAC 100 51
CH54_RS02200  485195 ..  485208 +  -4.5  -2.97902   CCAGACGAACAAAAT               TAGCC CGAC GGCTG                CTTGTTGTTGACTGA  49 23
CH54_RS02205 NONE
        araA  488697 ..  488712 +  -7.5  -4.09353   TTTATCGGTAACTCT              GGGGC CTAACC GCCCC               TTATATTTTTAACTC  73 80
CH54_RS02235  497863 ..  497889 +    -8  -4.28548   GTATGATGCAGATAA         GGGATTACCC TAATGAT GGGTTATCCC         TTTTAATGAATAAAT  77 40
CH54_RS02240  498422 ..  498447 +    -9  -4.42765   ATCTGTTGTCCTTTG         GCCGCCAATT TTGGAT AATAGGCGGC          TTTGCTTTTTTAGGC  86 89
        rsxA  499046 ..  499064 +    -6  -3.45849   ATTGGCCTTTATGGG             CTTTACCG GGT TGGTGAAG             TTCTAATGATGTCGC  62 1
        rsxB NONE
        rsxC  501908 ..  501932 + -12.9  -3.06796   GGATTAACGACTGAA          CTGACGCCCTG CAA TAGGGTGTCAG          TTCACTGACATCAGG  91 34
        rsxD NONE
        rsxG NONE
CH54_RS02275 NONE
         nth  506346 ..  506379 +  -7.5  -3.65902   TATCCTGAACATTAA     TCACCAGGCCCAGC AAAATAG GCTGGAC-TGGTGA     TTTAAATAGGCTGCC  68 26
CH54_RS02300  512115 ..  512136 +  -7.9  -2.88945   CGCATTGCTTGAATA           CGGCCCTGA TTCG TCGGGGCCA            ATTATTGTGGATCAC  62 29
CH54_RS02305  514273 ..  514300 + -12.1  -5.49569   GTATGACGGATAGAA        GCCGTGGTGATG CACAA CATC-CCACGGC        TTTTTTATGTTCATC 100 70
CH54_RS02310 NONE
CH54_RS02315  517175 ..  517199 +  -7.8  -5.75599   CAAGTGACACCGTAA          CGCCCTGTAA TTTTC TAGCAGGGCG          TTTTTTTATGCTTTA 100 68
CH54_RS02325 NONE
CH54_RS02330  519117 ..  519129 +  -2.6  -5.07486   ACTAAACACGGGCAG                CCGT CAAAC GCGG                TTTTTATTGCCCATA  70 36
        osmB  520684 ..  520709 + -13.5  -2.94099   GACGTGATAGTTTTG         TAAGGCGTTTA GTGG TAAACGCCTTA          TATCTACTCACCCAC  93 173
CH54_RS02355  522465 ..  522498 + -16.9  -4.71061   TAAGTCTGTGTCGTA     GCAACCAAAGAACAC TAAA GTGCTCTTTGGTTGC      TTTTTCAATGTGAAT 100 60
CH54_RS02360  522929 ..  522950 + -10.2  -2.85216   TACACGACCTATTCA           TCGGGTGA TTCAAT TCACCCGA            TACTTATAGCTAATC  73 57
        ribA  526548 ..  526567 +  -9.3  -4.84363   TAACACAAGCTATAA            GGGTGGT CTCGCA ACCACCC             TTTTTAATGATTTAA  90 79
CH54_RS02395  530925 ..  530940 + -10.4   -4.7261   CTCAGCAACCTCAAA              GCCCCT TTTC AGGGGC               TTTCTTTTAATGGAT  93 186
CH54_RS02410  535808 ..  535830 + -13.5  -4.35518   CGATTGCGCAAAAAA           CAACAGGGG CTTTC CCCCTGTTG           TTTTCATATCAGATT 100 78
CH54_RS02420 NONE
        cobO  538479 ..  538503 + -12.9  -4.40173   TTCAAATCAATCAAA          TGCCGCAGACA GAA TATCTGCGGCA          TTTTAGCTTTATAGT 100 54
CH54_RS02440  541962 ..  541979 +  -9.8  -2.59355   ACAACATAGATTAAA             GGCGGG GATTAA CCCGCC              ACTTTATTATTTAGC  70 40
CH54_RS02460  546605 ..  546618 +  -2.3  -3.65604   CTACCTCTCCCTATG               GAGGG ATGA CCCTA                TATTTATCTAATCTT  49 97
CH54_RS02470  548635 ..  548647 +  -2.7  -5.00895   AAGAGGCCAAAATGG                GAATG GGT TATTC                TTTTTGTGTACTAAA  70 278
CH54_RS02480 NONE
CH54_RS02485  550972 ..  551001 + -10.8  -2.85545   TTTTTCATCGTTCAA       TACAGGCCACGA CTACAA TAGTGGCCTGTA        TACTGTTATTCAGCG  77 62
CH54_RS02540  570954 ..  570966 +  -6.3  -3.61468   CCGATATCTTGCTGC                TCGAT AAT ATCGA                TTCCTTTACTTACAA  62 59
       trpCF NONE
        trpB NONE
        trpA  576229 ..  576246 +    -2  -5.22039   CACCAATACTAATAA             TGTGTA ACACAC TACGCA              TTTTTTACATTTAAG  73 251
CH54_RS02570  576660 ..  576681 + -15.9  -4.72986   AGTAATCCCCCTCTC           GGAGGCGCA TTCC TGCGCCTCC            TTTTTAATACACATC 100 36
CH54_RS02580  578786 ..  578800 +  -8.5  -5.29445   GATAAAATCAGAAAA               GGGCC ATTAC GGCCC               TTTTTGTTATTCAGG  93 52
CH54_RS02590 NONE
        yciA  581832 ..  581851 +   -15  -5.06816   CGGTAAATGCAAAAA            GGGCCGCT ATAA AGCGGCCC             TTTTTATTGCAGCGT 100 54
CH54_RS02605  583323 ..  583345 +  -4.8  -3.57792   GATATTTCTTACCAT           TCCCAGCCAA ATT TTGGCTCGAA           TTTCCCGATCACTGC  56 94
CH54_RS02610  583765 ..  583784 + -12.2  -3.23899   CTTTGATTGGAATCA            TACGCCTG GCTC CAGGCGTA             TTAGCTTGATTGCAC  83 53
         cls NONE
CH54_RS02630  587982 ..  588006 +  -8.6  -5.07486   ATGCCCATAAAAAAA         TCCCCGCT-GA TTTA TCTGGCGGGGA          TTTTTATTGGACATC  90 102
        adhE  600376 ..  600395 + -11.4  -5.05037   CACTGAAAGATATAA            CCCCCGAC ATCT GTTGGGGG             TTTCTTTTTATATTC  95 82
         hns  603853 ..  603876 +  -6.8  -5.55698   CTATTGTGATAGAAA          TACCCTCC-TA TTA TACGGGGGGTA          TTTTTTTGCGTTCTC 100 58
CH54_RS02715  608950 ..  608964 +  -2.8  -5.03145   AACCGTTAATAGTAC               CGAATG AGA CATTCA               TTTTTTCGAACATTG  70 348
CH54_RS02720 NONE
        purU NONE
CH54_RS02730 NONE
CH54_RS02735  611405 ..  611417 +  -6.3  -3.01119   TTATCCATGATAGAG                TCTGT AAT ACAGA                TATATCTACCTGAAT  55 281
        xthA NONE
CH54_RS02750  614644 ..  614661 +  -6.3  -3.34895   AGCGACAGTTTTTTT             CACTGAT TTGC GTCAGTG              TTGATTCCCAATGAG  59 490
        sppA  620399 ..  620416 + -14.1  -5.52384   GTAGATAAATACTCT             GCCCGGC ACCC GCCGGGC              TTTTTTTCCTCGCCA 100 56
        ansA NONE
        pncA  622185 ..  622204 + -11.4  -3.57263   GGGTATAAACATCAA            CGGAGCCG AATG TGGCTCCG             TTTGAACCTGCAACT  88 42
        gapA  624394 ..  624413 +  -5.7  -5.49234   AAATTTCCACCAAAA            GCCACTT TCATTC GAGTGGC             TTTTTTATTACCTGT  89 61
CH54_RS02805  625501 ..  625517 +  -9.4  -5.37345   TTACAGATACAAAAA              TGGGGC TTTAT GCCCCA              TTTTTTATGGTTCAG 100 50
        yeaG NONE
CH54_RS02820  630095 ..  630133 +  -6.7   -4.7373   TTAACAACCAAACTA   GCCGGCAATCTTTTTCT ACCAC AGAAATGGCTTTCCGGC   TTTTTAATGCGCTAA  81 54
CH54_RS02825  631552 ..  631571 +  -2.8  -2.52896   TAGTCATGTCTGCGG            TCACCAGC CGGG GTTGATGA             TAAATTGCCGCATGC  40 323
CH54_RS02835  633284 ..  633317 + -14.8  -2.80474   CTGATCTACTCGCTC     GCCATTACCTGATA TGCCCT TGTCAGGTAATGGC      ATTTAACGTGTTATC  95 44
CH54_RS02840  635991 ..  636007 + -13.7  -4.39166   GGTCACTCGCGTGAA              GGTGGGC ACC GCCCACC              TTTTCATCTGTCGGC 100 141
CH54_RS02845  637415 ..  637429 +  -8.6  -3.56568   GATTCGGGTGACAAA               TCTGCT GGG AGCAGA               TTTGAACGCTGCTTG  72 142
CH54_RS02860  642046 ..  642060 + -11.4  -4.74012   AAGAATTGTAAAAAA               GGGGCT AAT AGCCCC               TTTTACTTTTCTGCT  95 61
        nhaB NONE
        dsbB  645435 ..  645454 + -12.1   -5.1523   TCTTTATCTATTTAA            GGCGCCC AAAATG GGGCGCC             TTTTTATATTCTGAC 100 72
        minC NONE
        minD NONE
        minE  652895 ..  652922 + -14.3  -4.96996   ATGTCTTCGCAATAA        CTACCCCTGTA TTTATT TACAGGGGTAG         TTTCTTTTATTTGAC 100 40
CH54_RS02955  660306 ..  660337 +  -3.6  -3.53012   GGCCAGCAAACAAAT      CCCGATGAGCTTAC ACTG GTAAGTGATTCGGG       TTTGCGCGCGCAGCC  50 109
CH54_RS02980  665335 ..  665347 +  -4.1  -4.66537   AAATGACACGCAGGC                CGAAG TCG CTTTG                TTTTGTGTTAGCGCA  69 69
         pyk  667166 ..  667198 + -10.7  -3.68962   ATCTTTAATTAGAAA      CAAAAAGCCCACT CATTAAT AGCGGGCTTTTTG      TTGTCTCTATTCAAC  83 40
        znuC NONE
        znuB  672223 ..  672246 + -12.6  -3.63569   GTAATAATTGTTAAG          TGGGGTTTAT ATTA ATAAACCCCA           TTCTTAACCCCTTCC  90 37
        dtpB  674177 ..  674187 +  -6.8  -2.71325   GTTATCCAACCCCAC                 TGGG CCG CCCA                 TAAATTTATCGATAA  53 240
CH54_RS03050 NONE
CH54_RS03055  681423 ..  681439 +  -5.1  -4.29981   CTGCTCCTGACTGGC              CAGAGCA AAA TACTCTG              TTTTAGGTCTGTTTG  65 3
CH54_RS03060  682096 ..  682112 + -10.8  -3.14931   AACCTTGTTTATTCG              GGCGGC TAACT GCCGCC              TTCGTGCCCCCTCAG  79 88
        cmoA  683033 ..  683043 +    -4  -2.80589   GAAAGCGGGAGAGGC                 TCAA TGA TTGA                 ATTTGGCGATTTTTA  46 19
        cmoB  684212 ..  684222 +  -8.2  -3.50722   CACACATGGTGACGC                 CCGC TTT GCGG                 TATTTCATGGTTGAA  69 230
        argS  687738 ..  687751 +  -9.5  -3.80573   CGATAAAATACGAAA               GGCCC CATC GGGCC                TTTCGTCGTAGTCGC  83 51
        mdtH  693348 ..  693376 +  -8.1   -2.6155   GGTAGCTAGCCAGTC        ACTCGTCGGAG CGGCCTT CTCCGGCGAGC        CTTCCTATTACCCCA  61 32
CH54_RS03115  694166 ..  694183 + -11.3  -2.53674   TTCAGATTGATTAAC             GGAGGAG ATTA CTCCTCC              ATATTACTGCTTTCT  79 59
CH54_RS03135  696956 ..  696974 + -13.2  -5.37593   ATATTAAAGTGAAAA             GCCCATGA GAT TCATGGGC             TTTTTTCATTTGACG 100 40
CH54_RS03140  697409 ..  697420 +    -3  -4.08887   AAATATTATGATGGC                GTTT TCTG AAAC                 TTTGGTTTAGATCAT  55 57
CH54_RS03145 NONE
CH54_RS03150  698823 ..  698844 + -12.3  -5.33405   CATATTTGAGCGAAA           GGCTCTGAC GAAA GTCAGGGCC            TTTTTCTTTGGTGCG 100 39
        dauA  701229 ..  701247 +  -7.4  -5.47159   TTCGCGATCAAAAAA             GGCAGC ATAGATA GCTGCC             TTTTTATTTATTCAC  93 70
        lolB  707684 ..  707696 +  -3.3  -2.65264   ACTGAAGATGGATAA                CTGGG CGG CCCAA                TAGTATGACTCATAC  43 10
        ispE  708638 ..  708650 +  -3.3  -3.53444   GAGTTTGTGAAAATA                CCTGT CCC ACTGG                TTTGAAAGCCGGTCC  50 81
         prs  709925 ..  709950 + -13.3  -4.62168   GCAGATAAAGAAAAA         CCCGTTGATGC AGAT GCAACAACGGG          TTTTCTACTTTAGGT 100 222
         pth  711348 ..  711365 +  -5.5  -4.52042   AAGCGACGGTGCGCC             GGGGAAG TTAT CTTCCAC              TTTATTCGTTTTTAT  73 61
        ychF  713206 ..  713219 +  -2.4  -3.30441   TCTGCTGTCTCATGA               GGTT TCAGAT AACC                TTATGGAGAATGATA  45 47
CH54_RS03225  714282 ..  714294 +  -3.3  -3.07443   TCCGTGCGCCGCTAC                CCCGT GTT GTGGG                TTAAGTAAAGTATCG  45 93
        actS  715243 ..  715266 +  -9.6  -5.09426   TCTTGCAGATAAACA          AAAGGCTCCT GTTT AGGAGCCTTG           TTTTTTGGCATTAAC  93 69
        hutC  724198 ..  724214 +  -3.7  -3.05066   ATCAATTTTATTTCT              CTTCG AGAACTG CGAAG              TGTTACGCAATTGTT  47 40
        hutI NONE
        hutG  726560 ..  726577 +  -9.8   -4.0616   TTTAAATGCAAAAAA             GGCGGG AATAAC CCCGCC              TTTCTCATTCACCTA  86 240
CH54_RS21755  735634 ..  735646 +  -4.8  -2.52676   GAAAGTGCTCCACCA                CTGC CTGGC GCAG                TGCATTGAGCCGCTG  46 309
CH54_RS03320  738411 ..  738423 +  -5.5  -2.62026   ATAACCCAAATAGGA                GCTCA TGA TGGGC                ATTGATCTTCCACTG  51 18
        cydB NONE
CH54_RS20520 NONE
        narX  741433 ..  741465 +  -2.7  -4.30844   CGGACAATGATGACC      TTGACTGACGATTTT GTC AGAATCATCAGGCCA      TTTTACTGATAAGCT  57 18
CH54_RS03340  743816 ..  743838 +    -7  -4.40037   TATCTGTAGAATCAA           TGGACATTAC TTT GTCGTGTCCA           TTTTACTGATTCTTT  76 51
        chaA  745152 ..  745176 + -14.3  -5.26316   AAAGGGATAAGTAAA          GGGCAAGCGTT TGT GGCGCTTGCCC          TTTTTTATCGGGTCA 100 67
CH54_RS03400  758689 ..  758716 +  -8.6  -3.65671   CCGGGTAAGGTACAC        TCTTGCATATTA TTGA TAATATGCGGGA         TTCTCTCTGGTTGTA  71 306
CH54_RS03450  768388 ..  768410 +    -5  -3.36175   CCACAATAAATTACT           TTATTTTTAC ACA GTAAAGATAG           TTATCAATGAGACTT  54 183
CH54_RS03455  771011 ..  771033 +  -9.2  -2.93921   TCAGTTCACAGCAGA           CAGGCAGT CTTTTTT ACTGCCTG           CTATTTTACTTTATC  69 99
        ygbI NONE
CH54_RS03490 NONE
        dcuR  780695 ..  780730 + -10.7  -2.90075   GGCGCTAAAACTTAA    TAACCAACGGTAT CCAATAAGAA ATACCGTTGGTTA     TATCATTCACACAAA  77 45
        ansP  784677 ..  784713 +    -8  -3.72576   AGCTAGAGACTGATA    CTCAGTCTGTGGGGTG ATAAA TAAACCACGGACTGAG    TTTAATACGGACAGG  70 35
CH54_RS03520  786416 ..  786431 +  -6.8  -5.05782   TCTGCCCTGCCCTCA              TCCTGC TTTC GCGGGA               TTTTTTCGCCTAAAT  85 59
CH54_RS03555  791092 ..  791105 +  -3.9  -3.74251   CATGCTGCCGATATA               GAAAA TTCT TTTTC                TTTCATCGAAATATA  54 75
CH54_RS03560 NONE
CH54_RS03580  795145 ..  795162 +  -2.7  -4.64766   AACCAGTGAGCCAAA             GCAGA CCAGATAA TCTGC              TTTTTCAGCTCTGGC  65 355
CH54_RS22210  796373 ..  796394 +  -2.9  -4.37886   GTCAAAATATCGCCA           TTGCCACAG ATTT CTGTCGCCA            TTTTGTCGCCACTAC  60 461
CH54_RS03590  797041 ..  797065 +    -3  -3.08671   TCTACTCGAAATTCA          TTGTATTTAG GGAAA CTAAATAAAA          ATTTCTCTGGTTGTG  43 3
CH54_RS03595 NONE
CH54_RS03600  799453 ..  799464 +  -3.6  -4.34789   CCCCGACCTAACGCT                GGGG CTTG CTCC                 TTATTTTGTAACTTG  62 51
        cycA  802872 ..  802898 + -15.2  -4.07568   ATTTGTAGTCATTAT         CTGGCGTCAGAG TTT TTCTGGCGCCAG         TTTTAGCGGCCCACC 100 33
CH54_RS03630  805480 ..  805490 +    -4   -3.4252   ATCATTCATAATATG                 TAAC TCC GTTA                 TTATAGTGCATAAAA  50 317
CH54_RS03640 NONE
CH54_RS03645  807706 ..  807720 +  -2.8  -4.08767   AGGCCTAAAGCCCTA               TATTGC TCT GCGATG               TTTTCGCACGGTCCC  55 39
        wrbA  808607 ..  808625 + -13.2  -3.21218   TGCTAGCCCGTAGGG             TGAGCCTC TTT GAGGCTCA             TTAATCCTCAGGAGT  91 160
        putA  818440 ..  818453 +  -9.5  -4.67173   AGTTTCATCTACCAA               GGCCC TTCG GGGCC                TTATTTTTTGACTTA  93 69
CH54_RS03685  818979 ..  818994 +  -3.2  -3.14344   TTCAAAAGGATTGGA              CTTCAC TAAG GAGAAG               TTAATGGACAAGCTA  46 6
CH54_RS03690  819625 ..  819647 +  -2.7  -4.77567   CAAAACTCATTTCAT          GAGTGACGAT AACC ATCGTC-CGC           TTTTCTTCTGCCAGT  68 281
        fliD NONE
        fliS NONE
        fliT  828869 ..  828879 +  -2.6  -4.62336   ATGACAATAGATTTT                 TAAT GTC ATTA                 TTTTTAACATGGAAT  62 110
CH54_RS03745  830099 ..  830113 +  -7.2   -3.2794   TCACTAGATTTTTCT               TCCAAT AAT ATTGGA               TTGATATCAATAAAA  65 195
CH54_RS03750  833241 ..  833253 +  -6.3   -2.7794   TAACGCTATGCTAAA                TCTCA TCT TGAGA                GGTTTTTATTGGAGT  55 73
CH54_RS03755  833987 ..  834002 +  -7.6  -3.59979   ATTATTGCATGACGG              GTTTGG GGCC CCAAAC               TTTGAAGTACAGGAA  66 129
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ NONE
CH54_RS03795  841909 ..  841921 +  -9.1  -2.59569   TGGCGTTGATATTTT                CGCCT AAA AGGCG                CTGTTAATTTCACCA  67 19
        fliL  842677 ..  842705 +  -3.1  -3.30441   TAGTCAGCGATGTGC        TGTTTACCGCATT TAT ATTGCGATAATCA        TTATGGGCGATAGTA  48 0
        fliM NONE
        fliN NONE
        fliO NONE
        fliP NONE
        fliQ NONE
        fliR  846950 ..  846960 +  -3.2  -3.68244   GCACCATTAGCATCA                 TCAG GTT CTGG                 TTTGGCATTGCTGGT  53 469
        flgA NONE
        flgM NONE
        flgN  859144 ..  859161 +    -4  -4.26903   GCTAATCACTTGAAG             TGGCGG ATTTAC CCGCCC              TTTTCCTGCAATAAA  62 453
CH54_RS03920  864874 ..  864897 + -15.4  -2.77043   GCGAAAGTAAATAAA          GCAGATGAGG GAGC CCTCATCTGC           ATTTAGGGTCGTCAG  95 77
        uspC  879349 ..  879370 + -17.3  -4.68511   AATAGTCATTATAGT           TCCGGGGCC TATA GGCCCCGGA            TTTCTTTATCTTAAG 100 314
CH54_RS04000  885748 ..  885776 + -11.1  -5.56673   AAGCTGATAGCATAA       CCGGAGGTAAGG CTCTCA CCTT-CCTCCGG        TTTTTTATTGTCACT 100 80
CH54_RS04015 NONE
CH54_RS04020  891387 ..  891406 + -10.7   -5.5208   CCTTTGTAAATTTAT            GCGCCCA CCCTAT TGGGCGC             TTTTTTATCTTCTGC 100 193
CH54_RS04025  892590 ..  892601 +  -4.4  -3.13743   TGATGGCTGTTCAGC                GCTA TAAT TAGC                 TTCACTATGAAATTT  51 19
CH54_RS04040 NONE
CH54_RS04045  895097 ..  895113 +  -2.9   -5.4505   ACTGCCTACATAAAA              TCCGC TGACAAT GCGGG              TTTTTTATTCCAGCC  78 61
        ydfZ  895657 ..  895692 +  -7.7  -5.05113   ATGCTATCACTTGCT    TCTGGGGCTTATCTAT ATTTA ATAGATA-GCCCCGGC    TTTTATTTATATAGC  88 89
        glgC  898946 ..  898980 + -18.8  -3.36991   TTTCTGTTCCCTGAT     TAATAAAACGGCGCTG ATA CTGCGCCGTTTTATTA     TCTTTGCCAATAATA 100 228
CH54_RS04115  911656 ..  911673 +  -4.1  -3.28924   GGATAACATCATGGC             GCAGGTA ACTT TACCTAC              TTATGACGCCGGATA  50 174
        mtfA  913026 ..  913049 +  -3.8  -3.67967   CATAAAGGCATAAAA          TGGCGAATTC ACCT GATTTAGCCA           TTATCTCTCTCTGTC  54 63
CH54_RS04125  913242 ..  913265 + -16.8  -4.93696   AGCCATATTAGAAAA          GCCCGCTTAG GAAA CTAAGCGGGC           TTTTTGCTATTTAGC 100 36
CH54_RS04130  914442 ..  914471 + -15.9  -3.85362   GCGACATAAAATAAA       TAGCCCACTGGAGG AAA CCTC-AGTGGGCTA       TTTGATGATTAGCTT 100 380
CH54_RS04155  918878 ..  918908 +  -4.1  -2.91582   TCCAATAATATTCTT       TTGGCGGTATTAA TTATT TTAATACCATCGA       TATATACCTAAAGTC  46 33
CH54_RS04160 NONE
CH54_RS04165 NONE
        dpiB NONE
        dpiA  930581 ..  930599 +  -3.1  -4.09117   CTTGTGGGGCGCTGA             GCTTTTC ACCGA GAATAGC             TTATTTCTCCATCAG  56 76
CH54_RS04215 NONE
CH54_RS04220 NONE
        uhpC NONE
CH54_RS04230  935565 ..  935575 +  -2.4  -3.28924   CTTTTTCTATAACCG                 AGCC ATT GGCG                 TTGTAGCGAACACTG  45 79
CH54_RS04235 NONE
        fbpC  938832 ..  938864 +  -8.4  -4.37527   CCACAATAAATGCCC     CGGCGGGCAGT-CTG ATCA CACCACTGCCCGCCA      TTTTACTGGTTATCA  85 32
CH54_RS04245  939450 ..  939472 +  -8.4  -3.71848   TAACAAACCGTACCG           GCATACTGCG AAT CCCGGTATGC           TTATTGCTGCGCACC  71 377
CH54_RS04340  975325 ..  975335 +    -4  -4.08945   AAAGATCGCTAAAAA                 TGAA TGG TTCA                 TTTTAGCGGGATGCT  59 135
CH54_RS04355  978003 ..  978026 + -16.8  -5.05577   AGCCATATTAGAGAA          GCCCGCTTAG GAAA CTAAGCGGGC           TTTTTGCTTTGGTTT 100 165
CH54_RS04360  979337 ..  979347 +  -8.2  -3.94344   ACTGGTCTAATTTAC                 CGCG TAC CGCG                 TTATCTTTATATCGT  73 46
CH54_RS04365  983180 ..  983201 +  -8.7  -5.42514   ATGTTATTACTGAAA           GCTCGTCAG AATT TTGACGGGC            TTTTTTAATTTCTGA  95 57
CH54_RS04370  984125 ..  984155 +  -6.3  -3.01791   TCACCTACCCCTGAC       TATTCGTGAAATC CGAAC GACTTCATGAATA       TGTTGGCCAACCGGT  56 27
CH54_RS04375 NONE
CH54_RS04380 NONE
CH54_RS04385 NONE
CH54_RS04390  989827 ..  989837 +    -4  -5.04325   CTCTCAGCAAACGCG                 CATT TTT AATG                 TTTTTCTACTTTGAC  74 125
CH54_RS04395  989979 ..  990008 + -18.7  -4.78848   GGAGCCAAATTTTAG       CGCCCTGGAATTC TTTT GAATTCCGGGGCG        TTTTCTATTTCAGCG 100 34
CH54_RS21760  990581 ..  990608 +  -4.8  -3.66803   TATCCATCATTTTTA        G-CGCCTGTTCCA GCA TGGAGCGGGCAAC        TTTAGAATCTTCAGC  57 460
CH54_RS04410 NONE
CH54_RS04415  994821 ..  994840 +   -10  -4.19704   ATAACGGGTATAAAA            CACCCACT ATTC GGTGGGTG             TTTTAAATAGAATTA  89 126
        argG 1002462 .. 1002485 +  -9.6  -5.78622   TTTTTTAAATACCAA          CCGGATCAGT TTTA AGTGATCCGG           TTTTTTTTGCAATGG 100 44
CH54_RS04460 1006057 .. 1006087 +  -3.2  -3.93695   GGAACTAAGGCGATA       CCCAGATTGCTGTT TAC AAAAGCCAATTGGG       TTTGTGGCTCATCAA  55 195
        pduA NONE
        pduB 1029105 .. 1029117 +  -4.7   -3.4582   CGTCTTATATCTGAC                GCCAC AGT GAGGC                TGTTTCATGAAATCG  54 27
        pduC NONE
CH54_RS04600 NONE
        pduE 1032040 .. 1032057 +    -4  -3.14564   AAGGGGAAGCGTGCC             CTGGGC GCGATA GCCCCG              TTGATCACGACATCC  48 57
CH54_RS04610 NONE
CH54_RS04615 NONE
        pduJ NONE
CH54_RS04625 NONE
CH54_RS04630 NONE
        pduM NONE
CH54_RS04640 NONE
CH54_RS04645 NONE
CH54_RS04650 1039044 .. 1039080 +  -2.9  -2.91276   TTCTCCATTCGCTGA    GCGAGGATGTATGAAAA CTT TTTTCCTGCAAACGCGC    ATTTATAGCGGGGAA  42 26
CH54_RS04655 NONE
CH54_RS04660 NONE
CH54_RS04665 NONE
        pduU NONE
CH54_RS04675 NONE
CH54_RS04680 NONE
        cobA NONE
        cobD NONE
CH54_RS04695 1047145 .. 1047161 +  -6.6  -3.23042   TACAGGAAATGTAGT              GCAGAT GTAAA ATCTGC              TTCCTGATAAATCTT  60 279
CH54_RS04700 1048275 .. 1048301 +  -9.4  -2.81725   TTTACTGAGTTATCG         CAAAGCCGGATG CCC TGTCCGGCTCTG         TCATTAATATCCGCT  71 41
CH54_RS04705 NONE
CH54_RS04710 NONE
CH54_RS04715 1051845 .. 1051865 + -12.6  -4.24075   ATAGAAAAAAGAAAA            GGCTGGCA ATTGA TGCCAGCC            TTTCTATTAATAGCT 100 48
        sbcB 1056401 .. 1056418 + -12.7   -4.2558   TAATCCAATAAAAAA             CGGAGCC GTCA GGCTCCG              TTTTAATCAGCAATA 100 56
CH54_RS04755 NONE
CH54_RS04760 1062383 .. 1062398 +  -3.2  -4.28548   ACGCGCGCGCGCATT              CAGGAT AAAA ATCCCG               TTTTCGTGGGTGGAT  60 298
        hisL 1063498 .. 1063524 +   -21   -5.4505   AACGCAATAGAGAAA         GCCCTCGGAAGA TTA TCTTCCGAGGGC         TTTTTTGTTGCCCAC 100 72
        hisG NONE
        hisD NONE
        hisC NONE
        hisB 1067981 .. 1067991 +  -3.2  -2.67143   CAACACCCTGCCAAG                 TTCC AAG GGAG                 TGCTGTAATGGATGT  43 7
        hisH NONE
        hisA NONE
        hisF NONE
       hisIE 1070731 .. 1070755 +  -7.1  -5.06414   TTACTGGCAAAAAAA          CGCCCTCGA CTCAGCA TCGAGGGCA          TTTTTATTAAGGCAA  86 58
CH54_RS04825 1077300 .. 1077322 + -10.5  -5.73339   ATGATAAAAATAGAA           CCGGGTTGC TTATT GCTACCCGG           TTTTTTTATCATTAT 100 86
        metG 1086041 .. 1086065 + -10.8  -5.06414   CTAGAAGACGAAAAA         GCCAGTCATGG GAGT CC-TGACTGGC          TTTTTATTGCCAACA  93 48
CH54_RS04865 NONE
CH54_RS04870 1089794 .. 1089817 +  -7.4   -3.3579   AAAAACCTATAAATG          GCTGGTCGAT TTAG GTCGATCGGC           TATTTGCAAAAATTT  65 39
CH54_RS04875 NONE
CH54_RS04880 NONE
CH54_RS04885 1092421 .. 1092432 +  -2.2  -4.43477   AATTTGAGATACATC                TCTC ATTT GGGA                 TTTTACTTGCATAGA  59 54
         cdd 1093433 .. 1093456 + -12.5  -3.48807   CGAATAGCGCTTAAT          CCGGGGTTA TCTGAC TAACCCCGG           TTATCACTTTGCTCA  90 42
CH54_RS04895 1095652 .. 1095665 +  -4.5  -2.73364   GAGAATCCCGAATCA               CTGGC TCAA GTCAG                TGATTCGGGTGAACG  47 148
        sanA 1096767 .. 1096777 +  -6.8  -4.08064   TGGAATGCGACAACA                 CTGC GTA GCAG                 TTTTGAACAACGCTT  71 181
CH54_RS04915 NONE
        hyfB NONE
CH54_RS04925 1101771 .. 1101785 +  -2.1  -2.56539   GAGCTAATAAACCCA               TCATG GATAA CATGG               CTCTTATGGATTCAG  39 42
CH54_RS04930 NONE
        hyfE NONE
CH54_RS04940 NONE
CH54_RS04945 NONE
        hyfH NONE
CH54_RS04955 NONE
CH54_RS04960 NONE
        hycI 1109629 .. 1109675 +  -6.5  -2.78237   AGCCACCTTTGATTA GGTGAC-GGTGTGGTGTCGTCA AATT TGCCGACGTCACACCCGCCGAC AGTTTTTTCCAGTTC  55 29
CH54_RS04970 NONE
        fdhF 1112879 .. 1112897 +  -4.4  -3.53298   AATTGCCGCCCCTTT             TGGCCCGG CAA CCACGCCA             TTAGTTTCCCGTAAT  52 333
        focA 1116275 .. 1116300 + -14.1  -5.55664   AAATGACAATTAAAA         GCCAGCC-GAGT TTG ACTCTGGCTGGC         TTTTTTTACTGCTAA 100 89
CH54_RS05025 1125881 .. 1125909 +  -4.5  -3.01422   TTGAAACTCAGTAAT        TGAGCGGGCAGAG CTA CTTTTTCCGGTCA        TAATTTATACAAGTA  49 27
CH54_RS05030 NONE
        fghA 1128262 .. 1128275 +  -8.1  -5.67711   TGCCATTAACCTCAA               GCTCC TTCG GGAGC                TTTTTATTTTATTTA 100 255
        darA 1128715 .. 1128740 + -12.1  -3.45737   TTTAATTAAAACAAA         TTAAGATGCTA TTAG TAGCATCTTAA          TTATAATGATCATTA  89 57
        darB NONE
        darC NONE
        darD NONE
        darE 1134450 .. 1134475 +  -9.8  -3.29461   TTTAGCCAATACTTA         CTGAAGCCAT CTTATT GTGGCTTCAG          TTGTACGCAACATTA  75 22
        moeA NONE
        moeB 1138924 .. 1138942 + -13.2  -4.30987   ATGGGCATAAAAAAA             GCTGATGC ATT GCATCAGC             TTTCTTATCAACACT 100 47
        rhtA NONE
CH54_RS05105 1144743 .. 1144771 +  -4.5  -5.57396   AAACTTTATCGAGTA       CGCCAGCCCAGT CATTCC GC-GAGCTGGCG        TTTTTTATTGATTAT  89 59
CH54_RS05110 NONE
CH54_RS05115 NONE
CH54_RS05120 NONE
         tam 1147702 .. 1147742 +  -6.2  -2.62184   TCACGGTAATAACCC  TTTGAGTATGCCGGTTAA ATTAA TTTTCCGGCATACTGGAA  TGATATAACGCAGAA  54 32
         dps 1148859 .. 1148874 +  -6.2  -4.68424   CGCCTACTAATTACT              TAGAGA AATG TCTCTA               TTTTTAAATAACTTG  80 359
        glnH 1149773 .. 1149785 +    -2   -3.5637   GTAGAACCTAAGTAA                TTCA TTTTT TGAA                ATTTTTATACTCTGA  47 26
        glnP NONE
        glnQ 1151262 .. 1151289 + -12.1  -5.31275   CGTTAAAATAGATGA        TGGCGGGTATC TTCACT GATATCCGCCA         TTTTTTATGCTGACA 100 72
CH54_RS05160 1155001 .. 1155023 + -13.5  -5.36441   TCTGAAAGAGAAAAA           GCCCATCAG CCAAC CTGATGGGC           TTTTTTATGTCGACA 100 97
       ompF2 1163174 .. 1163191 + -12.7  -5.57396   AGTCATCACATTTTG             CCGGGAG GTCA CTCCCGG              TTTTTTATTACTTAT 100 117
        yedA 1164759 .. 1164769 +  -5.4  -4.10552   TATACAGCAAGAATG                 CAAC ATG GTTG                 TTTCATTTAGTAAAC  65 89
CH54_RS05200 1165312 .. 1165324 +  -4.1  -3.13522   ACCATATTTGCACAG                GTGAG TAT TTCAC                TGTTAGTGAAAAAAT  48 328
        sseA 1174706 .. 1174724 +    -3  -3.90744   CCTGATCACCACAAG             GGCGGAAG TTT TTGCTGCC             TTCTTTACGGAACAA  54 483
        yajD 1181503 .. 1181515 +  -3.3  -5.01823   GAAACCGAGCAATTG                CCGGT ATG AACGG                TTTTCTTGTTGTTCT  72 104
         dld 1184377 .. 1184408 + -10.3  -3.68506   TAATCCAATACTATA      GGCAGAG-TTGCAG GCTGG TTGCAAACTCTGCC      TTTCAGTGACTATTA  80 317
CH54_RS21895 1185970 .. 1185984 + -11.4  -4.96468   TTCTTTATCAAAAAA               GGCGCT TAA AGCGCC               TTTTATTTGCGTTTA  95 48
CH54_RS05310 1188467 .. 1188481 +  -3.4   -3.5002   TTTGACCACTTCCGG               CCACGG CAT TCGCGG               TTCGTTATACTTCAC  50 303
        cecR 1192013 .. 1192027 +  -3.6  -3.48276   TTATAAAAATTGTAA               CTATAA AAG TTGTAG               TTATATCCAAAGAAA  50 58
        hlyD NONE
CH54_RS05335 NONE
CH54_RS05340 1196242 .. 1196256 +  -4.2  -2.77005   AACGGAAGGGAGTTA               ACGATG TTT CATCGC               CTTTACACATTGATT  46 56
CH54_RS05345 1197386 .. 1197404 + -10.3  -3.71917   CACGAAAAACAAAAA             GGACACC AATAC GGTGTCC             TTTCAAATTTAGAGT  80 60
        yvcK 1202116 .. 1202126 +  -6.8  -2.84218   TGTTCAAGGGTAATG                 CCGT GTA ACGG                 ATCTTTTGATACATG  54 245
CH54_RS05390 1205959 .. 1205981 + -10.7  -4.18197   GCCAAAAGAAAAAGT           GGGCTAATA ACCGG TATTAGCCC           TTTTCAATACCAACT  90 77
        bioA 1211308 .. 1211320 +  -4.8   -3.4252   GCGATTTAGCGTGGT                CAGC TCGCC GCTG                TTCTGGTCAATACGA  52 217
CH54_RS05425 1213314 .. 1213332 +  -5.2  -5.85425   CTAAAGACTAAAAAA             GCGCCT TGATGAT GGGCGC             TTTTTTATTTCTTTC 100 50
        modE NONE
        modF 1218978 .. 1219021 + -19.8  -3.83724   CAGTCATTTATGCTA CTATTCCCGCCGTCAGATATG ATT CATG-CTGACGGCGGGGATGG TTTCGATTATCTGGT 100 120
CH54_RS05460 1219913 .. 1219924 +  -5.8  -4.72272   TACTGACTATCTTTT                GCTG ACTA CAGC                 TTTTTACTGACAACA  75 45
        galE NONE
        galT NONE
        galK NONE
        galM 1224583 .. 1224622 + -10.8  -2.69151   CTTTATTTCGCTATA  CGCTGTTAGCATTACCAC TCCG GTGGCAATGCTAATGGCA   TAATATATAACCAAA  76 41
CH54_RS05485 1225131 .. 1225157 +  -8.8  -3.48064   GTTCAAACCCCGCAA         TCTATGGGGT ATTTACC GCCCCATAGA         TTAATTAGTTATAGC  72 54
        gpmA 1226098 .. 1226123 + -15.5  -5.27938   GTGCTATTAAAAAAA         CCCCCGCGCATC ATG GATGC-CGGGGG         TTTTTATTTGCCAGT 100 54
        zitB 1228537 .. 1228577 +  -7.6  -2.78679   CCATCATTAATAGCC ATCAGTCAGGCG-CATGCT CTGT AGCACCTCGCCTGACTGAC  ATTTCCATCAACAGC  60 31
CH54_RS05590 1244016 .. 1244033 + -12.7  -2.98942   ATTAGGTATTAAAAA             GGCCACC CTAA GGTGGCC              TCTATATCACAAGAT  84 40
CH54_RS05635 1255806 .. 1255825 + -10.7  -5.24129   TATTTGATGTAAAAA            CGCCACC CTCTTA GGTGGCG             TTTTTTATACCCAAA 100 57
CH54_RS05695 NONE
        kdpA NONE
        kdpB 1269927 .. 1269945 + -10.2  -3.04398   ATTTCGTCACGACCA             CTGCCACC TTG GGTGGCCG             GTTTTAAGACCCAAA  75 72
        kdpC NONE
        kdpD NONE
        kdpE NONE
CH54_RS05725 NONE
CH54_RS05730 1276271 .. 1276291 +  -9.7  -5.69379   ACTGTCGAATATTAA            CAACAGCGA GTA TCGCCGTTG            TTTTTTTGCTTATAT 100 26
        ybfF 1279940 .. 1279956 +  -3.7  -3.28712   TGGGGAAAAGAAATG              TATTTCC TGT GGAAAAA              TTGTGCAAAAAAGAA  50 133
        ybfE 1280566 .. 1280597 +   -13  -2.91452   CCATCGGTTATCACG      ACGGCGTGGCGTAA GTGA TTACGCCACGCCAA       TATCCTTACAGTCGT  90 89
        fldA 1283186 .. 1283227 + -15.3   -3.1247   GTTAACTTGCCGTGT CGGAAACGCGAGGGTGATGT TAA ACATCAAAC-CGCGTTTCCG TTACCTCTAACGCCT 100 36
         fur 1284200 .. 1284241 +  -3.6  -3.12895   CAAGTTATTTCAGTT GGGAGTCAGGTGGTCATT TTTGTT ACTGATCTCCTGCATCCC  TCTCTTCGTGACAAA  46 121
        nagB NONE
        nagA NONE
CH54_RS05805 1297401 .. 1297416 +  -2.5  -2.78216   TCAACTTCACCATCG              GCCAT GTTATA GTGGC               TCATTGCTGCGGCTA  42 68
CH54_RS05810 1298269 .. 1298289 +  -4.7  -4.20918   CCAAGTTGCGCCCTT            TTTTAGTGC AAC GCACCAAAG            TTTCTTGCCATTACG  63 93
        asnB 1300270 .. 1300293 + -14.6  -3.93367   CGACTATGTTGCTTT          CAAGGCCGCC CACG GGTGGCCTTG           TCTTTTGTTGGCAAA 100 75
CH54_RS05820 NONE
CH54_RS05825 NONE
CH54_RS05830 1300746 .. 1300762 +  -9.5  -4.05446   ATCCTGGTATCCCAG              CCATTTC TCT GAAATGG              TTTGTCGTTAAACAC  86 23
CH54_RS05835 NONE
CH54_RS05840 NONE
CH54_RS05845 1301105 .. 1301120 +  -8.2   -5.1417   GCCAAATTTAGAAAA              GCTCGC TTCG GCGGGC               TTTTTGCTTTTCTGC  88 37
        miaB 1304149 .. 1304172 +  -6.7  -5.07652   GCCAGCACGCACCAG          CAGGCACTG CATTGT CAGTGCCTA           TTTTATTTTAGCGGC  85 55
CH54_RS05860 1305498 .. 1305514 +  -2.1  -2.91474   ACCCCGTCTGAGCAG              GAGGCTC CGT GAGCCAA              GTTATTCTCGATTTA  41 14
        ybeY 1306139 .. 1306152 +  -5.3  -2.94144   ACGAATCCCAATGAG               CTTAC ACAA GTAAG                TGATTTGGGTGAAAG  51 185
        corC NONE
         lnt NONE
CH54_RS05880 1309386 .. 1309406 + -11.2  -3.85817   CCAGATAATATTTCT            TAGCCCTG ATAAA CAGGGCTA            TTTATCCGCACAACT  90 136
CH54_RS05885 1310868 .. 1310894 + -11.6   -5.7946   GATACAGGAAATGAA         TGCGGGGTGG CCGTTCC CCACTCCGCA         TTTTTTTGTTAACCC 100 96
CH54_RS05890 NONE
        gltK NONE
CH54_RS05900 1313125 .. 1313152 +  -9.8   -2.9326   CCTGCATTAACCGCC        CTCCTCCCCTGC GCCG GTGGGGGAGGAA         ATTTGCTCTGGTTCT  72 31
        rihA 1314194 .. 1314217 + -16.8  -3.67188   GGCAAATAAGCTTTT          GACACTCCGC CAGC GCGGAGTGTC           TCTTTTAGCCTAAAT 100 32
        leuS NONE
        lptE NONE
        holA NONE
        nadD 1320073 .. 1320088 +    -9  -2.71144   TAGCCCGTAGGGTGA              GCCTCA AGGA TGAGGC               TCATTAGCCCCGATG  67 104
        rsfS NONE
        rlmH NONE
        mrdA NONE
        mrdB NONE
        rlpA 1325573 .. 1325625 +  -5.5  -2.68434   CGCTACATACGTTTA TAACCCAATTAATTGGCGTTGCAGC AAG GCAGCAACGTCAAGTAAGAAGGCTA TGGTATGATGTAGCA  51 132
        dacA 1326943 .. 1326960 + -12.7  -3.73008   ATAAATAATGTCAAA             CTCCCGC CTCG GCGGGAG              TTATAATTTTATAGT  90 77
        ybeD 1327351 .. 1327380 +  -9.3  -4.61353   TGCCTTTTCACCTAT       GGTCCGAACTGCTG ACT CAGCT-TTCGGGCC       TTATTTTTATCTCTA  88 55
        lipB NONE
        lipA 1329428 .. 1329448 + -11.9   -5.0925   ATAAATAATCAAAAA            CGGATTTCC ATT GGAGATCCG            TTTTTAATTTTCAGC 100 104
CH54_RS05985 NONE
        crcB 1331707 .. 1331730 +   -11  -4.11371   GCTAGAAATAAAAAA          CCCGCCTGAT AAGA ATGAGGCGGG           TTTTAAGAAATATTG  88 268
CH54_RS06000 1332748 .. 1332771 + -15.4  -3.54424   ATCGCAACCCATAAA          CAGCCCCAAA TAAC TTTGGGGCTG           TTTGGGGGGATCCCC 100 67
CH54_RS06010 1335172 .. 1335193 + -14.5  -3.83998   ATTTTTATAATAGAA           TAAGCCGCC ATCA GGCGGCTTA            TTTAATGTCGAATGC 100 374
CH54_RS06025 1336106 .. 1336122 +  -5.8  -4.58395   ATTGATTCTGCCACA              TGGCCG CGTAC TGGCCA              TTTTTCAGCAATAAC  75 87
CH54_RS06040 1339863 .. 1339898 +  -7.5  -3.72576   CTTAACCAGCTGTTT    TCCCCTTGCCCAGTG CGGTTC TGCGGAGCAAGGGGA     TTTGCTAGCACCGCC  68 44
CH54_RS06050 NONE
CH54_RS06055 1341775 .. 1341812 +  -8.5  -2.97408   TTCGAATAAAATGCA   TTGCCGGGAATATAAGTC ATA GACGTC-ATTCCCGGCGA   ATTATTTAACTCAAA  67 75
CH54_RS06070 1346419 .. 1346429 +  -2.4  -5.13741   TACCAACCACAGTAT                 AGCC TTC GGCA                 TTTTTCTTCACTTCG  73 314
CH54_RS06110 1353694 .. 1353706 +  -6.9  -3.58726   GTTTGACTCGAGACA                CCGGC CAT GCTGG                TTATATATCCACCCA  64 75
CH54_RS06115 1355735 .. 1355745 +  -2.4  -2.82623   TAAAGCTGTGAAATA                 CAGC TTA GCGG                 TGCTTGTCCACACCA  41 227
CH54_RS06120 1357126 .. 1357144 + -11.7  -2.92792   ATAGATTAGTGAAAA             GGGCCAC TTAAT GTGGCCC             TAGTTTGAGATAAAT  82 32
CH54_RS06130 1359776 .. 1359792 +  -4.3  -2.58249   CGACGGGCATTAACA              CGCCGAG TGC CTTGACG              ATTATGGCCAATGTA  47 92
CH54_RS06135 NONE
CH54_RS06140 NONE
CH54_RS06145 1363222 .. 1363237 +  -8.2  -3.94438   AATCGCTATTACAAC              GGCCTC ACTT GGGGCC               TCTTTTGTTCCAGTC  73 58
CH54_RS06155 NONE
        dmsB NONE
CH54_RS06165 NONE
CH54_RS06170 NONE
CH54_RS06175 1369614 .. 1369624 +  -3.2  -4.87803   TGATATCGCCCGCAT                 TGGT CAT GCCA                 TTTTGTTTAAAGGTC  73 501
CH54_RS06195 1371880 .. 1371893 +  -3.1  -2.58812   ATCTAAAAATAACGC               TGACG CTCC CGTTA                TCGCTTAAATTTGAG  43 35
        ypdK 1372245 .. 1372275 +  -7.7  -3.66654   TCACTACCTGACATC      GT-ATAAAGGACGC ATTT GCGCCCTTTATCAC       TTTAGGGTTCACATC  70 57
CH54_RS06220 1376391 .. 1376401 +  -3.2  -4.24342   GTATTCCGCTTGATA                 CTCT GCC GGAG                 TTTATTCCTCCGGCA  59 43
CH54_RS06225 NONE
CH54_RS06230 NONE
CH54_RS06235 1380523 .. 1380539 +  -6.5  -3.14344   CGTAAAAAAGCAGAG              CCTTGGC TCT GCTGAGG              TTAATAACAAAACTG  58 52
CH54_RS06250 NONE
CH54_RS06255 1384622 .. 1384647 +  -3.1  -2.54098   TCTCTTTTTAATCAC         TAAACAGGGGG GATG CCCCCTGTACC          CTCTTCATTACCCCC  42 45
CH54_RS06265 1385319 .. 1385347 +  -5.3  -3.29144   TTACGAACAAGACAA        CAAATTTACCCAG AAT CTGAGTCAGTTTG        TTATCAACCAACTCC  54 134
CH54_RS06275 1388103 .. 1388116 +  -9.5  -5.65177   AATAATCTCTAAAAA               GGCGC TACG GCGCC                TTTTTTTATGCCTGT 100 50
        gltX 1390706 .. 1390725 +  -7.1  -5.38321   CTAACTCATTTATTA            GGCGGCT GACTAA AGTCGCC             TTTTTTATGCTGTTT  93 44
CH54_RS06310 NONE
CH54_RS06315 1391096 .. 1391110 + -12.8   -5.2696   CCACTCTTTAAAAGA               CCGGCC TAT GGCCGG               TTTTTTGCCTTTTAA 100 38
CH54_RS06320 NONE
CH54_RS06325 1392279 .. 1392311 + -11.4  -4.13767   CTTAAAAAACAAGAC     TATGGCGAT-GACGG GCAT CCGCCCATCGCCATA      TTTTAGAATGCCAGA  90 53
        cysZ 1396656 .. 1396676 +    -6  -3.02144   CACAATAATTTTGCC            TGGGCGTG CTGGT CGCGCCCC            TATTGCCGAGAATAA  56 33
        cysK 1397835 .. 1397850 + -10.4  -5.60993   CTAAATGCTAAAAAA              GCACCC TCGT GGGTGC               TTTTTTTGTGGCGCG 100 54
        ptsH 1398503 .. 1398518 +  -3.2  -2.65904   AAAACTGATGGCAGA              GCTTGA GTAA TCACGC               GTGCTTTTTTAGTTA  43 16
        ptsI 1400372 .. 1400387 +  -3.3  -2.74488   GAGAGTCCCGATGAG              CTTAC TGTGTT GTAAG               TGATTCGGGTGATTG  43 110
         crr 1400993 .. 1401010 +  -9.8  -5.34309   TACGAATATGGAAAA             CGGCGC CTTTGT GCGCCG              TTTTTGTTTGATAAT 100 46
CH54_RS06425 NONE
CH54_RS06430 1414878 .. 1414893 +    -6   -4.5442   TCACCAAAAGATAAA              GGCCGG GAAA CCGACC               TTTTGTCATTCAGAA  77 58
CH54_RS06445 1417475 .. 1417496 + -10.2  -3.15663   TGCTAGCCCGTAGGG           TGAGCCTC CAGGAT GAGGCTCA            TTAATCCCGATGAGT  75 185
        hemF NONE
CH54_RS06460 1419665 .. 1419678 +  -2.4  -3.61398   GCCAGCAAAAACCGC               CGAA ATACCC TTCG                TTCTTGAAGCCGCAG  47 5
        narP 1429476 .. 1429488 +  -4.7  -2.57013   TCCTGCAATGTGCGC                CGCGG CCA CCCCG                TCAATTCCATTAAGC  46 361
        acrD 1432971 .. 1432994 + -11.8  -3.85698   GACGGGCATAAAAAA          GGCAGAAGCT ATAA AGTTTCTGCC           TTTCTGCGAGCGAAG  91 80
CH54_RS06540 NONE
CH54_RS06555 NONE
        dapE NONE
CH54_RS06565 NONE
CH54_RS06570 1443198 .. 1443212 +  -5.6   -4.2461   CCAATGCAGTTTGCC               GTGCGC CAA GCCCAC               TTTGTTGCTGCCAAT  66 383
CH54_RS06610 NONE
         bcp 1451430 .. 1451445 +  -6.1  -5.45652   ATAAATTGCAAAAAA              GAGCG CTCAAA CGCTC               TTTTTTATTGGCAAT  91 65
CH54_RS06625 NONE
        arsC 1455151 .. 1455165 +  -7.2  -4.77036   CAATTTGGCGCGTAA               TTGCAA AGC TTGCAA               TTTTTCATCATCAGA  83 264
        purM 1459176 .. 1459189 +  -3.9  -2.73681   AATGAACCCGATGAG               TTTAC ATCA GTAAA                TGATTCGGGTAAGTG  45 118
        purN 1459963 .. 1459979 +  -2.3  -4.56597   CCCTGTGCTTATACC              TTGTGCT AAT AGTATAA              TTTTTAGGGCAGCAG  61 103
        speG 1460928 .. 1460942 +  -8.6  -2.80881   AATGGCAATGCATAC               TGATGC CAG GCATCA               CTTAATTTCTGTTCA  62 387
        ppk1 NONE
         ppx NONE
CH54_RS22030 NONE
        mgtE 1472491 .. 1472501 +  -2.4  -2.82635   TATATTTTTATGTGA                 TGGG TTT CCCC                 TATCATAATCAAAAT  41 148
CH54_RS06705 1475955 .. 1475969 +  -4.2   -3.7645   AGTCGCGCCCTTTAT               TTGGCC TGG GGGCAA               TTATGTTCATTGGAT  54 88
        yegD 1477316 .. 1477326 +    -4  -5.13344   TGGGCACAGACACTT                 TATC GGT GATA                 TTTTTATATTGATGT  74 17
CH54_RS06720 NONE
CH54_RS06725 NONE
        mdtC 1485971 .. 1485983 +  -3.3  -2.84325   ATGGCAATTATTATT                GCGCT ACT AGCCC                TGATATTTAACCGCG  44 102
        baeS NONE
        baeR NONE
CH54_RS06745 1488656 .. 1488676 +  -6.8  -4.58424   GCTAAGAATGTATTC            GCGCGG AGTATGTGA CCGCGC            TTTTCTCTCCTCATA  79 80
        yegQ 1490392 .. 1490419 + -13.5   -5.3658   AGGAACCACCTCCTT        GGCTAGCCCAA TCTCCC TTGGGCTGGCC         TTTTCTTTTTATCAT 100 180
        yegS 1491934 .. 1491949 +  -6.2  -3.85698   CGGAACATTAAATTT              CTTTTG ATAA CAAAAG               TTTATAAAAACAGCC  66 348
CH54_RS06760 NONE
CH54_RS06765 NONE
        srlB NONE
        srlD 1495060 .. 1495073 +  -6.7  -2.73681   GTAAATCTCGATGAG               CTGAC ATCA GTCAG                TGATTCGGGTGCATG  56 190
        gutM 1495509 .. 1495523 +  -3.6  -4.33997   ACCGAAATCATGATA               TTTTCA TAA TGAAAG               TTATTCTTTTTCATG  62 28
CH54_RS06785 NONE
        gutQ NONE
CH54_RS06800 1499141 .. 1499162 +  -2.9  -3.65046   CCGGCCCGATCCCCT           GCC-CCACCT CGA GGGTGTCGGC           TTGTTCCAGTGCCCC  51 145
CH54_RS06865 1511993 .. 1512011 +  -7.4  -3.15249   TAGCAATAGACACAT             TGCTGGAT GAA ATCCAGCC             TTACTAAACACTCTG  63 487
CH54_RS06955 1528527 .. 1528546 + -10.7  -5.71712   TGAGTGCTGTGTCTT            GCCCCTC TGCGCC GAGGGGC             TTTTTTTATCTCAAA 100 131
CH54_RS20275 1529483 .. 1529506 +  -3.8  -3.92075   CGGCCCTGCTGCGTG          GCTCCGGGCAA ATG TTGC-TGGCGC          TTTGTGACTGGGAAT  57 130
CH54_RS07035 1537992 .. 1538025 + -11.8  -2.67827   AAAAACAATACGCTG     GGAGGCTGATGCCGG AGTTG TCGGCATT-GCCTCC     GTTGTCAGTTATATT  81 117
CH54_RS21900 NONE
CH54_RS07045 1540255 .. 1540271 +  -4.3  -2.60392   TGACTTGCGCCGCCT              TGAAGCG CTG CGCCTCG              CTTAATTGGAGAATG  47 4
CH54_RS07050 1541459 .. 1541476 +  -8.3  -3.16177   ATCTAACCATCCTGT             GCGGGGC TTCG GCCCCGA              TTCACTATGTCGACT  68 35
CH54_RS07055 NONE
CH54_RS07060 NONE
CH54_RS07065 NONE
CH54_RS07070 NONE
CH54_RS07075 1543279 .. 1543291 +  -2.7   -2.5166   TGTATTGGCATTTTA                TATTG CAG CAATG                CTCATTTATTTAATA  41 69
CH54_RS07080 NONE
CH54_RS07085 1544006 .. 1544024 +    -3  -3.99324   CGTACTCAGCTTTAT             TGTACACG GCG CGGGTACC             TTTCTGCTCATGGGC  56 118
        xseA 1550216 .. 1550237 + -13.1  -3.35073   TGCTCGCCCGCAGGG           TGAGCCTCA GGGA TGAGGCTCA            TTAATTCCGAATCAT  93 130
CH54_RS22035 1577202 .. 1577220 + -14.6  -4.56607   TATCTGTCATAAAAA             GGGAGCCA AAT TGGCTCCC             TTTTCTCATTAATGG 100 76
        suhB 1587657 .. 1587680 + -10.3  -5.88565   GATGCACATTAAAAA          GCCAGTCGG CTAACC CTGACTGGC           TTTTTTTATTGTGAG 100 57
        csiE NONE
        hmpA 1595180 .. 1595194 +  -4.9  -2.53263   CCTCACTATTCATTG               CCCTG TCATT CGGGG               TGAATTAAGGCTGAA  48 249
        yhfZ 1596097 .. 1596113 +  -6.5  -3.32023   GAGCTGTACAGCACG              GCGAGAT AGA ACCTCGC              TATTAATTATATCAA  60 3
CH54_RS07285 1596809 .. 1596835 +  -9.5  -4.46854   TTAGAAATAAAAAAA        GCCCGTATCGTT TTGT GACGAT-CGGGC         TTTCTTATTGGATAA  90 287
CH54_RS21480 1604303 .. 1604321 + -13.2  -3.42482   TATAAAAGTAAAAAA             GGGCATCA ACC TGATGCCC             TCTTCTATTAAGTCC  93 58
        mltF 1610090 .. 1610112 + -11.4  -2.95884   AGCATAAATGCTGTT           CAAATCGGTT CCC GACCGATTTG           TCTCTCAGTTGCTGC  81 111
CH54_RS07330 1611940 .. 1611952 +  -3.3  -3.84639   ACTTCAGTGGGCTTT                GGCAC TCG GTGGC                TTATTCTAACTGTTG  54 57
CH54_RS07350 1615309 .. 1615319 +  -5.4  -3.94811   AATAACCTCCCATAT                 TCAG GAA CTGA                 TTTATGAGTAGTCTT  63 263
CH54_RS07355 NONE
CH54_RS07360 NONE
CH54_RS07405 NONE
        nadB 1630765 .. 1630779 +    -5  -3.69216   ACCATTTCCACGGTT               TTGGCA ACT TGCTAA               TATTTTAGATAAAAC  58 94
        srmB 1632995 .. 1633013 +  -7.4  -6.07374   TACTCTGACAAAAAA             GCCGCT TATTAAC AGCGGC             TTTTTTATTTTTTAT 100 46
         ung 1634964 .. 1634981 +  -8.4   -4.2349   AGAGAAAATAAAAAA             GGCACC CATCAA GGTGCC              TTTTACCTATCAGGA  82 56
        nadK 1636619 .. 1636630 +  -4.4  -3.05844   TACTGTATATAAAAC                CAGT CTAT ACTG                 TATTCAAATGCAGCC  49 59
        recN 1638333 .. 1638351 +  -2.5  -2.92653   ATTACTCGCAGCGTA             GAAAAGA TTAAC TTTTTTC             CTTTCTAGAGGTCAT  43 25
        bamE 1638924 .. 1638944 + -10.5  -5.71638   GGCTGCAACAAAAAA            TAAGGCGCA GAT TGTGCCTTA            TTTTTTTGCTTGTTC 100 161
        smpB 1640310 .. 1640324 +  -6.4  -3.40522   AAGTGACTGGCTTAG               CAGGAC ATA GTTCTG               TTATACTAGCGAAGT  60 39
        ssrA 1640772 .. 1640797 + -16.1  -5.40625   AACGAAGTCCTAGAA         GCCCGCATGGC GTAA GCCCTGCGGGC          TTTTTTGTATCCTCT 100 72
CH54_RS07490 1642390 .. 1642408 +  -6.7  -3.39908   AATACCTGATGCTAA             GGCTGAT AGCTG GTCAGCC             TATGTTTTAAAGAAG  62 257
CH54_RS07495 1642926 .. 1642943 +  -4.2  -3.63046   GGAAAGTTAAGCCAA             GAAAAG CAATAA CTTTTC              TTATCTACTTATCCT  54 14
CH54_RS07530 1654970 .. 1655016 + -11.2  -2.90511   CAAACCACGACGGAA CATACACGGAATGC-CCTTATCC GGCA GGGTAAGGCGCA-TCCGTG-ATG TCGTATTTGTGCATA  80 60
CH54_RS07535 1657043 .. 1657053 +  -6.8  -3.65714   CTAAACACCCTATTA                 GCCA AAC TGGC                 TTTCGGGTATAATTT  66 453
CH54_RS07545 NONE
CH54_RS21490 NONE
CH54_RS07550 NONE
CH54_RS07555 1660591 .. 1660611 + -11.9   -5.5074   TTTTCTCTAGCCAAA            GCCACTTCA TCT TGAGGTGGC            TTTTTTATTCCCTTA 100 45
CH54_RS07560 1661513 .. 1661536 + -13.2  -5.27476   TGTCATCACGATAAG          GCCGCTATCT CACC GGATAGCGGC           TTTTCTTTTATTGGA 100 72
        radC NONE
CH54_RS07570 1662653 .. 1662670 +    -7  -5.79526   ATGAAGATTAAAAAG             CCTCTG CTAACC CAGAGG              TTTTTTTTCGCCTAT 100 364
CH54_RS07605 1670133 .. 1670150 + -11.3  -3.69621   ATTCACTCTAAAAAA             GCCGGAA AATC TTCCGGC              TTTCACATTATCACT  88 55
CH54_RS07615 NONE
        crcB 1672249 .. 1672267 + -13.2  -4.89852   TACCAGGCATAAAAA             CACCCTCA TGA TGAGGGTG             TTTTTATACATCTGA 100 61
        hdeB 1674177 .. 1674193 + -12.3  -5.14645   ATTTCTTATAAAAAA              GGCGCTT GAT AAGCGCC              TTTTTATTAAATTAT 100 53
        ftrA 1690926 .. 1690949 +  -6.7   -4.1891   CGGAATAATAAAAAA          GCCACATTC AACTAA GAACGTGGC           TTTCTATTACAGCGA  73 33
CH54_RS07730 NONE
CH54_RS07735 1692951 .. 1692970 +  -9.3  -3.49102   TCAGAATAGTCTACA            CGCCATC AAGCCG GATGGCG             TTATCTCGGCGCTGT  74 514
CH54_RS07760 1694451 .. 1694474 +  -7.4  -2.88667   GTTTGTTTATCGGTG          GCCCG-GGTGA TAT TCACGGCGGGC          TAGGTTTTTATGACG  60 108
CH54_RS07770 1696557 .. 1696577 +   -14  -3.38314   TATCATCAAACTCTA            CCGCCAGC CCCGT GCTGGCGG            TCTTGTCTCTGAGTT  95 109
CH54_RS07775 1697021 .. 1697034 +  -3.1  -2.71831   CTGATGAGGGCAACA               CAATG AATC CGTTG                GTGTATTTTTCCAGC  43 37
        nrdI NONE
        nrdE NONE
        nrdF NONE
        proV NONE
        proW 1703497 .. 1703510 +  -5.3  -2.73364   GTAAATCCCGATGAG               CTTAC ATCA GTAAG                TGATTCGGGTGCGCG  49 104
        proX 1705046 .. 1705071 + -16.3  -3.42503   TATAGATACAACGAA         GCCCTGAGTTA GCAA TAACTCAGGGC          TTCTGAATGTTGGCG 100 489
        rnhA 1706729 .. 1706753 +  -7.8  -4.06419   AACCCAAGGCTGGCA          GATGGGTGCT GATAA AGCGCCCACC          TTCTTTATGCCACGG  73 184
        gloB 1708087 .. 1708109 +  -6.3   -4.6008   TTTTCCGAATTACGT           GCACAGAAA GACCG TTTCTGAGC           TTTTAGTTGTGTTTT  77 5
        mltD 1709601 .. 1709616 + -10.4  -5.60993   TAAAGCTGTTAAAAA              GCACCC TTAG GGGTGC               TTTTTTTATGGCCGA 100 56
        yafC 1714306 .. 1714320 +  -8.6  -2.97029   GAGCTAACAGATTGC               TGGCTA AAT TAGCCA               CTTTCGTTGATGAAG  63 182
        bamD 1726589 .. 1726606 + -12.7  -4.33754   CGATAAAATAACAAA             CGGCAGC TCAA GCTGCCG              TTTTCAATTCTGCTT 100 70
        raiA 1727514 .. 1727532 + -11.7  -5.95539   AAGACGAACAACAAA             GCCTCCC AAGCC GGGAGGC             TTTTTTTATTTAGAA 100 262
        pheA 1728758 .. 1728774 +  -5.7  -2.52464   AATAGTCAAAAGCCA              CCTCGAC ACT GCCGGGG              TGGCTTGGGGAAAAC  50 57
        btsR 1732236 .. 1732248 +  -4.1  -3.33696   TAGATAAAACGAGTA                TGAGC CAT GTTCA                TTGCTTAAAAAAGCC  50 296
CH54_RS07935 1733669 .. 1733701 +  -5.5  -5.79595   AATGAGTAACAGTTG      AGCTAAGAGCCAGAG CAA TTCTGGCTCTTTTCA      TTTTTTCTTTTCGCC 100 43
CH54_RS07940 1734814 .. 1734836 + -13.4   -3.2218   ATAGAAATAAAAAAA           GGGGTCAGCC AAT GGCTAACCCC           TTCATAACTATTAAC  91 180
CH54_RS07970 NONE
CH54_RS07975 1740912 .. 1740928 +  -5.1  -5.24449   GACGGACATAAAAAA              GACGC CTTTGCA GCGTC              TTTTTTGCATTTATC  83 61
CH54_RS08045 1752812 .. 1752828 +  -3.6  -2.61728   ATATATCTCAACCAC              TGCTGG AGTTA CCTGCA              ATTCATGTTGCCAAT  43 212
        fumA 1759668 .. 1759697 + -17.9  -3.86897   CGGTTAACAGTAAAA       GCCAACCTCGGTG ATTT CGCCGGGGTTGGC        TTTATGAGAAATGAA 100 34
CH54_RS08075 1761421 .. 1761437 +  -9.3  -3.20633   ATTTTGTCGGGAAGT              GGCCGCC TCA GGCGGGC              TTCCCTGTGTTCTCC  70 49
CH54_RS08080 NONE
CH54_RS08085 NONE
CH54_RS08090 NONE
CH54_RS08095 NONE
CH54_RS08100 1765907 .. 1765928 + -15.1  -3.33261   GCGTAATAATCCCTA           CCCCTCGGC ATAC GCCGGGGGG            TTATGCGCATTCGCA 100 35
CH54_RS08105 NONE
CH54_RS08110 NONE
CH54_RS08115 1769574 .. 1769603 + -11.5   -3.3334   AAGCCTCTGCCCAGA       TAACTCTCGGCTA ATTA TCGCCGGGAGTTA        TTCTGCAATAGACTT  85 39
CH54_RS08120 1770910 .. 1770923 +  -5.9  -2.51133   ATTAATAATGACTAT               GGGGT TAAC GCCCC                CTTAATACCTAAATA  50 48
CH54_RS08125 NONE
CH54_RS08130 NONE
CH54_RS08135 1772771 .. 1772782 +    -3  -2.82482   CAAATAATAACTCAG                GTTT TATT AAAC                 ATTTAAATCCTATTA  42 60
CH54_RS08140 NONE
CH54_RS08145 1774575 .. 1774588 +  -3.9  -2.74488   TATTCGATCGGCTGT               TTTGT ATTT ACAAA                TAATTGAGGTGGTTC  45 79
CH54_RS08150 1775905 .. 1775921 +  -8.7  -2.57244   GCCCTCAACTCACTC              CGGCAGA TGT TTTGCCG              TCGATTCATCGGTAG  64 73
        fusA 1778735 .. 1778763 + -13.9   -5.4505   AAATAACAAACCAAG        CCGCCAGTGGA TCATGTT TCCGCTGGCGG        TTTTTTATTGGCGAG 100 57
CH54_RS08170 1780744 .. 1780771 + -11.4  -3.68529   GCCAATCCAGAAAAA        CATCCGTAGTGT CGAT AAACTACGGATG         TTTCACTCATAAAAT  88 63
CH54_RS08175 1781671 .. 1781686 +  -7.6  -2.83522   ATGACTTTGATGACA              TTGCCA TCCA TGGCAA               CTTTCATCACGCCGT  60 81
CH54_RS08275 1802388 .. 1802398 +  -2.6  -4.22554   GTAACAATTTGAAAA                 TAAT GAA ATTA                 TTCTTTCTTACATCG  57 125
CH54_RS08280 1804088 .. 1804105 +  -9.1  -2.76272   ACAGATCAATGCATA             GCCCCTG AGTT TAGGGGC              TAATCTGCTTTGTTT  68 59
        mutS 1806795 .. 1806830 + -12.8   -4.4009   TATTAATTTTAGCCA    TAAAAAAACGGTGAAC ATCA GTTCACCGTTTTTATG     TTTTCTCAACTGCGC 100 51
CH54_RS08330 1814458 .. 1814512 + -10.8  -3.48598   AATACACTTTTTAGA CCCAAAGTCATTGGCGTTACAGCA GTCACCA TGCTGTAGCGCCAATGAATAAAGG TATTTGGATTGCTTA  82 60
CH54_RS08335 NONE
CH54_RS08340 1816399 .. 1816410 +  -4.4  -3.53224   TTTTGCATACAAATC                CTGT GGGC ACAG                 TTTACCGGCACGCTC  54 412
CH54_RS08370 1822315 .. 1822331 + -13.7   -4.6645   TGCCGCAAAAAATAA              GGGCGCT ATG AGCGCCC              TTTTATCTCTCTGTC 100 46
        queD 1827737 .. 1827755 +  -7.4  -4.07568   TTTCATCTGCGCGCT             GTAATGCC TGT GGCAATAC             TTTTAGGCCACCACG  71 386
        barA 1843315 .. 1843327 +  -3.3   -4.2558   TTACCCTCACGCAGC                AGACC CAA GGTCA                TTTTGCTGCCGACTG  60 470
        mtnN NONE
        btuF 1847986 .. 1848000 +  -6.4  -3.24456   CAGTCTTCCATCCCC               TGTGGC GGA GTCACA               TTAATGCTGGTCTAT  58 7
CH54_RS08470 1848693 .. 1848703 +  -5.4  -4.32951   TGTAGACTCTCACCG                 GCTT TAC AAGC                 TTTATTCATTAGAAT  70 100
CH54_RS20730 1849153 .. 1849173 +  -3.2  -5.93809   TCAGATAAAAAAAAA            CCACGACT ATGAA AGTTGCGG            TTTTTTTTATCAAAA  90 44
        hemL 1852791 .. 1852808 +    -7  -2.74563   TCAATTACTTAACCA             TCTCCC TATGCT GGGAGA              TGGTTAAAATCTAAC  56 43
        thpR NONE
        sfsA 1863427 .. 1863440 +  -8.1   -4.3129   AGCGGCCTGATTTTT               TCCCC TATT GGGGA                TTTTGATAGTGCGTA  80 157
        dksA 1864145 .. 1864172 + -11.2  -2.72511   TACAAAGGGTATGAC        ACGGTGCCAGAG CCAT CTCCGGCACCGC         ATTTACCACACTGGA  79 240
      gluQRS 1865127 .. 1865137 +  -2.4  -2.90392   GCATTCTCAAAGACA                 GCAC GGT GAGC                 TATGATTAGACGCTG  41 17
        pcnB NONE
        folK 1867231 .. 1867248 +  -4.1    -4.015   GATAAAAATGGCCTG             GTACCTT GGTA AGGGTGC              TTGTTTGCTAAATCC  59 14
        panB 1868111 .. 1868122 +    -3  -2.55624   TCCCGCTGAAGAACA                TACT TTCC AGTA                 AGTTTTGGTTGATAA  41 13
        panC NONE
        panD 1869739 .. 1869759 +  -8.3  -4.87807   CCGCACAATAAAAAA            GGCGCTT ATAATTA AAGCGCC            TTTTTCCTATCTTCA  90 183
         can NONE
CH54_RS08585 1875715 .. 1875738 +  -9.5  -2.52896   TATAAAAAAGAAAAC          CTCCCCGAC CAACTC GCCGGGGAG           TGACTTAAGCGCTGA  70 36
CH54_RS08595 1877978 .. 1877989 +  -5.8   -2.9155   AACCGTGCAACCTCA                GCCA GAGT TGGC                 TATGATGTTGCCCCC  52 74
        speE NONE
        speD 1879755 .. 1879771 + -12.3   -4.8622   ATATCAGTCTTAAAA              TCCCGGT CTA ACCGGGA              TTTTTGATTAAGGCA 100 54
        yddG 1886929 .. 1886939 +  -2.4  -3.86252   CTGCCTTTGACTTCA                 GCCG CCG CAGC                 TTCTATTTGATCCAG  52 235
CH54_RS08640 NONE
CH54_RS08645 1895388 .. 1895399 +    -3  -4.81249   AATACCGCGTCAGCA                GAAA ATTA TTTC                 TTTTTCGCTTTCGGG  65 101
CH54_RS08670 1904502 .. 1904526 + -14.3  -4.88795   CAATATTGTCGCTAA          CGGGCCAGC CATCAGT GCTGGCCCG          TTTATTTTATTGAAT 100 76
        nadC 1907279 .. 1907293 +  -7.2  -3.28712   GGTAGCTACCAATTG               CAGAAT ATC ATTCTG               TTCTGCGAGCACCGC  65 63
        ppdD NONE
        gspE NONE
        hofC 1910663 .. 1910682 +  -4.9  -4.96848   TCATTTTATTAAAAA            GAGGCGT TGGTTT ACGCCCC             TTTTTATATCAAGAA  77 71
        coaE NONE
        zapD 1913569 .. 1913590 + -13.1  -3.15544   TGCTAGCCCTTAGGG           TGAGCCTCA AGGA TGAGGCTCA            TTAATCCCGATGAGC  91 132
        yacG 1913901 .. 1913924 +  -9.7  -2.63901   CACGGCCTGACCAGA          TGGAGCAAA CGGCGT TTTGCTCCA           CTTCATTCATAAGGT  70 45
CH54_RS08740 1918403 .. 1918413 +  -2.4  -3.69092   AGACGGAGCTTTGAA                 CGCC AAT GGCA                 TTTCGGCTTCGTCTT  50 61
CH54_RS08825 1937817 .. 1937838 + -11.6  -3.07443   ACAAGCAAACAATAA           TCAGGGCC TAGGAT GGCCCTGA            TTGGCTAAAATGTAG  81 184
        leuA NONE
        leuB NONE
        leuC NONE
        leuD NONE
        tnaC 1951227 .. 1951246 +    -5  -3.17318   AATTCCCCCATTGCT            TATTCAGC TTCG GCTGAAAA             TCTCATTTCTTTATT  53 39
        tnaA 1952822 .. 1952852 +  -6.9  -3.31133   AATAAACAACAATTT       CCCCCAAGATC ACTGCATTG GGTTTTGGGGG       TATTCTCATGATTAT  62 36
        sgrR 1959806 .. 1959837 +  -5.2  -3.35046   TACCGCCTCAGATAC      CTTTGC-CACCTTTA TCT TTAAGGAGTGCAAAG      TGTTTAAACGCATGA  54 374
        thiB NONE
        thiP NONE
        thiQ 1963482 .. 1963495 +  -2.4  -4.25104   AGGCAACCAATCACA               TTCG GCAACG CGAA                TTTTACTGGCGGCAG  57 407
CH54_RS08920 1966659 .. 1966672 +  -5.3  -2.72991   TCAATCACATTTACA               TAACC GACT GGTTA                TAATTAACCGTGTAA  49 114
        rapA NONE
        rluA 1970436 .. 1970463 + -12.8  -4.70319   CGCACCAGAATCAAA        CTAGATCGGAAC AGAA GATCCGATCTAG         TTTTGGTTTTGCTAA 100 57
        lptD 1973900 .. 1973913 +  -3.7  -3.07816   TACAGTGAATTTTAA               CCCGC AAAA GCGGA                TTACATAAATGGAAA  47 60
        surA NONE
        pdxA NONE
        rsmA NONE
        apaG NONE
        apaH 1978323 .. 1978354 + -11.1  -4.66987   ATAAATTACAACAAA      GATAAAGGTGCAT ACTAAA ATGTACCTTTATC       TTTTATTAGGGTGTC  93 37
CH54_RS08995 1982176 .. 1982197 + -10.1  -3.11325   TAATAAGCATAAAAA           AGGGCGATG TTTC CATCGCCCG            CTTTCTTACAATCTA  75 201
        rpsT 1994634 .. 1994647 +  -9.5  -5.76633   TGCTTCGTAAAAAGA               CCGGC CTAG GCCGG                TTTTTTTATATCTAA 100 56
        satP 2001483 .. 2001508 +  -9.1  -5.77988   GTTTATATTTAATGA         CACTCTGAACA TTTA TATTCAGAGTG          TTTTTTTATATCTAT 100 59
        yaaA 2008738 .. 2008754 +  -9.4  -3.23684   ACTAAAATGCAAAAA              GGGCCA GTATG TGGCCC              TCTGATTTTTATCTC  73 36
        arcA 2015360 .. 2015379 +  -9.3  -5.03715   TGTCTACAATAAAAA            GCCAGCA CTCACA TGCTGGC             TTTTTTACCCGTCCT  90 51
        robA 2017178 .. 2017213 +  -6.3  -3.64703   GCTGTAGCTCATCCA    GTGCTGGC-ATATC CAAGTGGGC GGTATCGCCAGCAC    TTTCAATGACCCAAC  64 42
        yjjX 2018711 .. 2018724 +  -6.7  -3.68988   GCAACGCAACAAAAG               TCAGC CAGT GCTGA                TTATCTTCAGTCGAC  63 340
CH54_RS09150 2024202 .. 2024221 + -12.1  -5.64274   CAGTTATCCAATCAA            GCCCGGC TATTCC GCCGGGC             TTTTTTTATGCATCG 100 60
        ettA 2026155 .. 2026172 + -12.7  -4.72272   ATTATCTAGACTAAG             GGCCTGC AATT GCAGGCC              TTTTTCATAGGAAAG 100 50
CH54_RS09165 2028250 .. 2028286 + -12.4  -3.36515   ATTAATGATCCTACC   CTT-CCCGCGCTTCAGT CAAT ACTGAGGGGCGGGCAAG    TCTTTGCAAATCGGC  87 36
CH54_RS09190 2034272 .. 2034288 +  -7.9  -2.96695   GTCATTGAACGTGGT              CTGGCGC TCA GCGGCAG              TGGTTTGCTCACCGG  60 138
        rsmC 2048009 .. 2048048 +  -2.3  -3.36492   CTTGTCTTGCGCCAT TTTTGTTACTGTATC-GGC CAAT GCCAGATTCAG-AGCAAAG  TTATCACCTTGAAAA  45 284
CH54_RS09260 NONE
CH54_RS09265 NONE
CH54_RS09270 2050499 .. 2050515 +  -6.5  -2.78384   TACAGCATGCTCACA              GTCGCCA GCA TGGCAAC              TATAATCAAAACCCG  54 211
CH54_RS09280 2052599 .. 2052609 +  -3.2  -3.96148   GCCCGGCAAATGACT                 CTCT TAC AGGG                 TTTATCCTAAGCAGC  54 515
        dhaR 2055258 .. 2055275 +  -2.7  -2.92425   AAAGTTAGAATTAAT             TCCATTT TGAT GAATGGG              GTTTAAATTATTATT  43 141
CH54_RS09290 NONE
CH54_RS09295 2057697 .. 2057712 +    -4  -3.01924   AGCAGAAAAATCAAT              TCGACT GGAT AGTTGA               TATTAGGAAAAGATA  47 10
CH54_RS09300 NONE
CH54_RS09305 2060735 .. 2060750 +  -3.4  -3.28712   TAACTCTGTTATAAA              TTAATA AGGA TATTAA               TTATGAAAAAACCAA  48 62
CH54_RS09310 NONE
CH54_RS09315 2063908 .. 2063940 + -11.4  -2.94595   TGACTCAGGGCAATG     CCGCTCACTGGAG TTTGAGTT CTCCAGTG-GCGG      TATCTAATAGGGCTT  81 65
        lsrA NONE
        lsrC NONE
        lsrD 2086661 .. 2086672 +  -4.4  -3.95352   ACGTCGCAGAAATAC                GGTT AATT AACC                 TGTTGTTTTTATTTA  59 16
        lsrB NONE
        lsrF 2088729 .. 2088744 +  -5.4  -2.77166   GTAATAACAAGGAAA              CCCTTG GTGA TAAGGG               GATTTTTTGCAATAA  52 64
        lsrG 2089070 .. 2089094 +   -10  -4.55908   TGCCTTAATCCATCC          GGGCAGCG GCTCCCTCG CGCTGCCC          TTTCTTCTATTTCTT  91 33
CH54_RS09410 2089846 .. 2089864 + -12.4  -5.67063   ATGAGGAATAACCGA             GCGCAGCT TGC GGCTGCGC             TTTTTTTATACTGAG 100 45
CH54_RS09445 2099390 .. 2099404 +  -4.2  -3.88766   ACTGGCAATACTGAT               GCGC CCAATTA GCGC               TTTACTCTCTGGGAT  57 27
CH54_RS09450 NONE
       imm45 2109079 .. 2109097 +  -5.4  -2.75863   TTTCACGGCGGGATT             TTATTTTC ATG GAGAATAA             TAACTTTAATTTTGG  52 54
CH54_RS09460 2110402 .. 2110414 +  -5.5  -2.92936   TTCTTATCTTTTGGC                TTGGC GGT GCCGA                TGTCATTGCCTGGTT  51 502
CH54_RS09475 2115109 .. 2115121 +  -4.7   -4.2693   CAAATGCACCATACA                GCGGC TGG GCGGC                TTCTTTTAGTACCTT  64 489
        pepA 2122590 .. 2122603 +  -5.3  -2.73681   ACTCATCCCGATGAG               CTTAC ATCA GTAAG                TGATTCGGGTGAGTG  49 106
CH54_RS09510 NONE
CH54_RS09515 2126056 .. 2126083 + -15.6  -6.10489   TGAAGTAAGCACTCA        CTGGGGGCCATA ATAA TTTGGCCCCCAG         TTTTTTTTTGCCATT 100 53
CH54_RS09525 2126718 .. 2126742 + -12.2  -2.70932   AAAACGTTATGATAA          TTCAGGGCGT ATCAA GCGCCCTGAA          TAATTAGCGGAAACC  81 29
        argF 2128515 .. 2128536 +  -6.5  -4.67123   ACTAAACATAACAGG           GCCGGC-CAT CCG AAGTGCCGGC           TTTTGATTATTTTCA  80 36
CH54_RS09545 NONE
CH54_RS09550 NONE
CH54_RS09555 NONE
CH54_RS09560 2133842 .. 2133854 +  -3.3  -2.73364   CTGATTTCTCTGGAG                GTTCC CGT GGCAC                TGATTGAAGTCAAAA  43 6
CH54_RS09565 2134729 .. 2134742 +  -6.7  -3.67634   CCTGTACAAAAAGGC               GGCAT AAAA ATGCC                TATTTTGGGGTGCTC  66 190
        nrdD NONE
        nrdG NONE
        phnF NONE
        phnG NONE
        phnH NONE
CH54_RS09595 NONE
CH54_RS09600 NONE
        phnK NONE
        phnL NONE
        phnM NONE
        phnN NONE
        phnP 2146084 .. 2146100 +  -7.9  -3.28791   GCAAATCCCGCTCAG              CCTCACC TTT GGTGCGG              TTATAAAACAGCCAT  64 394
CH54_RS09665 NONE
CH54_RS09670 2156459 .. 2156475 + -12.3  -3.01684   AATTTTATTCCGGAT              GGGGCAA TCA TTGCCCC              TCTGTGTCGATACTT  84 39
CH54_RS22065 2157117 .. 2157148 +    -6  -2.97386   ATAATCTCCCTCCTG      CGATGAC-ATCCATT TTT ATTGGATAGTCATTG      TCTATGCTCAATTTT  56 13
        speF 2159763 .. 2159784 + -15.9  -2.94938   ATAAATAACTCAAAC           CTGCGGGGA ATTA TCCCCGCAG            TCTCTGAAATTTTAA 100 33
        potE 2161140 .. 2161166 +  -3.8  -2.77043   AAATAAGCAACAGAA        TGGCTCATATC GAGCAA GATA-GGGCCA         ATTTAAACTGATCAG  46 35
CH54_RS09685 2161945 .. 2161968 +  -3.1  -3.25491   CAGTAAGCCGTCCTC          GCGCAGTTG TTGCAC CAATTCCGC           TTCATCATCTCGCTT  45 411
CH54_RS09700 NONE
CH54_RS09705 2164661 .. 2164678 + -10.5  -3.12069   CCTAATAGATTAGGC             GGGGGGC CACG GCTCCCC              ATTTATTCACATTGA  75 36
CH54_RS09710 2165993 .. 2166008 + -10.4  -5.88471   GCAGACATAAAAAAA              CCAGCC CGAG GGCTGG               TTTTTTTTAATCATC 100 62
        yhbY 2184537 .. 2184560 +   -14  -3.51958   TGCACTTTGTTCTGA          TAAAAGGCCG CAAG CGGCCTTTTA           CTTTTCTTTACAACT  95 69
        dacB NONE
        pmrA NONE
        pmrB 2188599 .. 2188626 +  -9.9  -3.96481   CATCTGTTTTATAAA        CAAAGGCCACC ATGAAA GGTAGCCTTTG         TTTCAATTCTTTTTT  86 71
        ispB 2192802 .. 2192832 + -19.2  -4.71426   TTTAAGAAACCATTA       GGAAAACTCTGGCA CCT TGCCGGAGTTTTCC       TTTTGTTAGTCACCA 100 36
CH54_RS09850 2193945 .. 2193955 +  -2.4  -4.58395   CGATATCTTTACGTT                 CTGC TAC GCCG                 TTTTTGCCCAATAGA  63 207
        argR 2195725 .. 2195743 + -14.6  -3.68359   CGGCACTTTATCTGG             TGCGGCGT GAT ACGCCGCA             TTATGCTTTTGAGCC 100 43
        yhcN NONE
CH54_RS09870 2196996 .. 2197014 + -11.6  -5.61596   CCGACGAACCCTTTT             ACCCCCGC TAT GCGGGGGA             TTTTTTTATCCGGCT 100 214
         fbp 2199653 .. 2199672 + -10.7  -5.67063   TTTTGTATCCGAGAA            CAGCGGC CACTAA GCCGCTG             TTTTTTTATGCTACA 100 80
         ppa 2202150 .. 2202179 +  -9.4  -5.42975   TTTTGAGTGAACAGC       AAAAAACACCGC CATTGC GCGGTGTTTTTA        TTTTTCTTTATGTGG 100 100
        msrA 2209332 .. 2209346 +  -5.7  -3.56568   GATTCGGGTGACAAA               TCGGT CAGGA ACCGA               TTTGAACGCTGCTTG  58 138
CH54_RS09915 2210963 .. 2210988 + -14.7  -3.49618   GATTCCTGAAAACAT         TAGCGGCCCCT AATT AGGGGCCGCAA          TTAATTCTGTACGGA 100 63
CH54_RS09925 NONE
CH54_RS09935 2215307 .. 2215342 + -22.8  -2.57781   ACAGAAGAAATAACT    GCTAGCAACAGCGCTT TACG GAGCGCTGTTGCTAGC     TCGCTTACCTCTTTA 100 28
        ytfE 2216138 .. 2216156 + -14.6  -3.97834   CAATAAACGCAAAAA             GGGCGACA TCA TGTCGCCC             TTTCTCATGCCATTC 100 66
CH54_RS09950 2217848 .. 2217861 +  -5.3  -3.59649   TTAACCCCAGCCGCC               CAGAA CCAC TTCTG                TTTACCGCCTTATTT  56 37
CH54_RS09955 2218497 .. 2218515 + -11.7  -4.11484   CGCCAGAAAGCAAAA             CGCCAGC ACAAG GCTGGCG             TTTTAGCAGGTTAAC  91 92
CH54_RS09980 2220749 .. 2220765 + -10.8  -5.30686   CCCGCAGACCCATTC              CCCCCG CTTGT CGGGGG              TTTTTTATAGATATT 100 103
        bsmA 2222152 .. 2222172 +  -3.9  -2.73364   CCAGGCATCGGCTAA            CGGCGGT GAGGTAA ACCGCAG            TAATTGCGATGCACA  44 146
        queG 2242350 .. 2242366 + -10.9  -2.62616   TCGAACTCGCGACCC              CGACCTT GGC AAGGTCG              TGCTCTACCAACTGA  72 402
        rsgA NONE
         asd NONE
        mscM 2249418 .. 2249444 + -11.7  -4.64861   AGTAAGAAACAAAAA        TGCCCTGAACCT TCAC AGGT-CAGGGCA         TTTCTTTTAGCACCG  95 49
        frdA NONE
CH54_RS10125 NONE
        frdC NONE
        frdD 2254455 .. 2254477 + -12.7  -5.58454   CCCAAGCTCTCTCAG          CGGCCCGTGC TTAT GC-CGGGCCG           TTTTTTTGCTATACC 100 44
         blc 2255174 .. 2255200 + -13.1  -2.92653   TTGAACTCTATAATC        GACTAAGGGGGG AAGC CCCCCCTT-GTC         ATTTATGACGCTAAT  91 43
        epmB 2257887 .. 2257900 +  -5.3  -2.77235   AAAGAACCCGATGAG               CTTAC TCAG GTAAG                TGATTCGGTGATTGA  50 142
        aspA 2263388 .. 2263416 + -10.4  -5.04601   CCGGTAGCCCTATAA       GGCACGCATGCTCC TCT GGA-CA-GCGTGCC       TTTTTACTTTCTAGC  93 50
CH54_RS10190 2264799 .. 2264821 + -11.2  -3.00525   ATCTATCAGCTGTAA           ATGGGGCGCG CGA TGCGCCCCAC           TCTCATTTGCGAGCG  81 40
        cutA NONE
CH54_RS10200 2267423 .. 2267445 +    -4  -2.78715   TTTCAGGGTGGCGCA           GTTACCGGTC ATG GAGCGGCAGC           TATAGTGCCCCACTT  45 426
CH54_RS10220 2273911 .. 2273941 +  -4.2  -3.31799   GAAGAATAACAGTTA       TATTATCGATATAA ATA TTATAAGGATAATA       TTATGAGCACTTGTA  50 99
        garD 2275544 .. 2275564 + -16.9  -4.20367   TTCTGCACTGCTCTT            GGCCGAGTC ACT GACTCGGCC            TTGTTTGTTCACCCC 100 60
CH54_RS10250 NONE
CH54_RS10255 2281375 .. 2281398 +  -5.3  -4.26003   GTTAGCAATCAATTA          GCTCACTTG TTAAAT TAAGTGGGC           TTTGTTACGTGTTAT  65 146
CH54_RS21905 2283403 .. 2283414 +  -5.8  -2.75521   GATTACTATTGATTG                CACC ACAA GGTG                 ATTTAGGCGTCTAAT  52 117
CH54_RS10275 2284023 .. 2284037 +  -8.6  -3.49618   ATTCAGGCTGATGTT               CCGATA AAC TATCGG               TTGCTTGTGTCAACG  72 47
CH54_RS10285 2286386 .. 2286399 +  -4.5  -4.16146   AGTTCAAAGCACTCA               GTGCA TAGG TGCGC                TTTTAAACCTCTTTT  63 72
CH54_RS10320 2296021 .. 2296038 +  -2.7  -4.87893   CGATAAGTCTCTTGT             CAGGTAT GCTA ATAACTG              TTTTTAATTCAGGTT  68 450
CH54_RS10325 NONE
CH54_RS10330 NONE
CH54_RS10335 2298886 .. 2298900 +  -2.8  -2.91873   ACAAGATCTATTTTT               CTGGAA GCT TTCAAG               TGCTTTGCGAATGAT  42 252
CH54_RS21555 2300221 .. 2300233 +  -6.3  -3.48276   TGTAATACTTGTTCT                CGATT TAT AATCG                TTGTATCACGAGGAC  61 334
CH54_RS10385 2305862 .. 2305876 +  -3.6  -2.70946   TGGTAATCACAGTTT               TAGCTA CAT TAGTTA               CTATTTGTCCACCAA  42 87
CH54_RS10415 NONE
CH54_RS10420 2311769 .. 2311785 +  -8.7  -2.84459   CTATTATGCCGACTA              TCCACCA GAC TGGTGGG              TATCGTCCTCCTGTT  66 278
CH54_RS21825 2313222 .. 2313236 +  -8.5  -3.05498   GATTAAAGAAGCAAG               GCCCG AATTA CGGGC               TCTCTCTATGGGGTG  67 133
CH54_RS10445 NONE
CH54_RS10450 2318887 .. 2318898 +  -5.8  -3.09878   AGTTTCAGCCATGAC                GGAG GGAG CTCC                 TATTCCCTCCATGCA  54 89
CH54_RS10455 2319256 .. 2319283 + -12.9  -2.74514   GACAAACCATCGATA        CAAGCCTTTAC GCTGAA GTAAAGGCTTG         TCATTACACATTTAC  90 40
CH54_RS10460 2319930 .. 2319942 +  -3.4  -2.62616   AGCCGCAGAAAGTCA                TGCT AAAGG AGCA                TAATATGAGCCATGA  43 10
CH54_RS10465 2320640 .. 2320651 +  -7.2  -2.55896   TTTCATACTGGGATA                CGCG AGAA CGCG                 CTGTTGCTTCATCAA  59 401
CH54_RS10480 2321570 .. 2321581 +  -5.8  -3.34244   AAGCCTTGCCAGATA                TGGC GTCC GCCA                 TCTATTTATAGGCTA  56 119
CH54_RS10585 2343990 .. 2344021 + -10.4  -2.57963   TAAGAATAATTTGAC      GACTTATTGACAAA CCTA TTTATCAATAAGTC       ATTGATAGTTCTGGA  72 38
CH54_RS21255 2345618 .. 2345632 +  -2.8  -3.16534   TATTAATTTTGCTAG               CATCAT GAA AGGATG               ATTTTAATAAAATTA  44 215
CH54_RS10595 2346994 .. 2347018 + -17.3  -3.81926   AAATAACCTTAACCA          CCACTGATGAC ACT GTCATCAGTGG          TTACTTTTTGACCTG 100 39
CH54_RS10630 NONE
CH54_RS10635 2356274 .. 2356300 +   -11  -4.08144   TCTGAAATAACACTT         CCGGTAATTC AATTAGC GAATTACCGG         TTTATCATTCCTACC  88 58
CH54_RS10640 NONE
CH54_RS10645 NONE
CH54_RS10650 NONE
CH54_RS10655 2360024 .. 2360038 + -11.4  -4.67641   TTGCGTCAGTAATAG               CCAGCC TAA GGCTGG               TTTTGCTTTTCAGCT  95 29
CH54_RS10665 2361908 .. 2361926 + -12.4  -3.98661   AGAATGTCATCATTA             GCCCGCAG AAA TTGCGGGC             TTTATGATGAATATA  93 47
CH54_RS10675 2366998 .. 2367012 +  -6.4  -3.20382   CTGGATCAAATAGCG               GATGGT CGG GCCATC               TTGCTGAATATCCAA  58 200
CH54_RS10840 NONE
CH54_RS10845 2394291 .. 2394321 + -12.6  -4.21462   AACGCCCAATAAAAA       CCCCCCTGTTAG TCTCGCT CCAACAGGGGGG       TTTTAACTGATAAGT 100 77
         acs 2398597 .. 2398616 +  -9.2  -3.00418   GCACCGTCGTAAATT            ATGCCGCC TGCG GGCGGCAC             CTTATTTAATGCCTC  69 29
CH54_RS10860 NONE
        actP 2400629 .. 2400642 +  -9.5   -5.4588   TCATTATTCACAAAA               GGCCC TAAG GGGCC                TTTTTTATGGTTTTA 100 44
CH54_RS10895 2407414 .. 2407442 +  -6.1  -3.19656   GAGATTAATTTCTGA        TGCAGGGAA TTAACCATATC TTCCCTGCA        TTACTCCGTGACTTT  58 40
         def NONE
         fmt 2412729 .. 2412744 +  -6.8  -5.32944   ACTTTCCCTTTATTT              GCTGAC GTTT GTCGGC               TTTTTTGGTTATGAA  89 106
        rsmB NONE
        trkA 2415495 .. 2415517 +    -2  -4.39889   TGATTAAATTAAAAC           TATTCCCATT GAG AATGGAAAAA           TTTTCCTATAATTAT  59 48
        mscL 2416029 .. 2416046 +  -9.9  -5.59655   TATTAAATGTAGAAA             GCCATCA ATAT TGATGGC              TTTTTTATTGCTTTC 100 50
CH54_RS11160 2440244 .. 2440261 + -12.7  -4.18494   CATAAATAGCAAAAA             GCCAGCC GCAA GGCTGGC              TTTTGACTGACCATA 100 68
CH54_RS11185 2445639 .. 2445652 +  -9.5  -4.07568   ACCAAGCAATTTGAA               GCGGG GTAA CCCGC                TTTTCAAAAAAGACC  86 17
CH54_RS22075 NONE
CH54_RS22085 2446530 .. 2446562 +  -2.9  -3.71848   CAAAAACATTCATTA      CATAAATAGATATTA AAT TGATGTTTATTTTTG      TTATTGCTCAGAGGA  50 17
CH54_RS11195 2447761 .. 2447773 +  -3.3  -4.50976   GCCAGCGCCAGCGCA                CCTGG AAC TCGGG                TTTTGTGGTGTGGGC  66 119
CH54_RS11230 2454087 .. 2454098 +    -3  -2.52464   CCCTATTTGGAGCAA                TCAT CATG ATGA                 TCCCTTGGCAACAAG  41 17
CH54_RS11235 NONE
CH54_RS11240 2455364 .. 2455422 +  -3.9  -3.24755   AGAAGATCGGATAAT TCTTCTGTCTTGGAGCTGCAG-GTAG GCGGTTAG CAACTCTGCAGCTGCAAGGGCGAAGG ATTTATTTAGGCGAT  48 27
         crp 2456815 .. 2456839 + -15.8  -4.84311   TTAATTCCCTATAAA          CTGGTGCCGA TACCC TCGGCACCAG          TTTTCTTCTATACCC 100 37
CH54_RS11255 2459267 .. 2459281 +  -3.4  -3.85698   TTTAACCTTTGACCA               GGCTGG TAA CCGCCC               TTTCTAAACGCGCCA  54 88
CH54_RS11285 NONE
CH54_RS11290 2467608 .. 2467618 +  -2.6  -4.02334   CTCACATCCCGGTCA                 TATT CAG AATA                 TTTATCCTCTGGCTC  55 145
        tsgA 2469049 .. 2469062 +  -2.3  -5.95539   CCGCCATCTCGGTTG               CAGGG CAAT CACTG                TTTTTTTATTTAAAG  86 62
        nirB NONE
        nirD NONE
        nirC 2474582 .. 2474599 +  -9.1  -4.09685   TGATACCCGAATTCA             CCAGCTC TTAG GGGCTGG              TTTTACCCCCTAGCG  83 165
        cysG 2476224 .. 2476235 +  -2.2  -3.17051   TCCTGCAAGAAAGCT                TCGT CTTC GCGA                 TATTGATGATAACGC  43 194
        mrcA 2489218 .. 2489242 +  -9.4  -5.60993   GCACCAAAATAAAAG         CCGGGA-AATC GCAA GATTGTCCCGG          TTTTTTTATGGCGAG 100 82
CH54_RS11395 2492585 .. 2492597 +  -2.7  -3.64369   CGTTAGCCATTTTTC                GTTTA TTA TGAAC                TATTATTTATACCTT  50 35
        yrfG NONE
        hslR NONE
        hslO 2494777 .. 2494804 +  -6.3  -4.02456   AATTCTTGTAATGCA        TAGTTGGGTGC TGACTC GTGCCCAGCTA         TTTCTCCTGCTGTTT  69 39
        pckA 2496612 .. 2496629 +  -9.1  -5.61881   TGTAAGATGACAAAA             GGGGCAC ATTG GTGTCCC              TTTTTGTTTTTCGCA 100 55
CH54_RS11435 2501051 .. 2501069 +  -5.2   -2.8383   CTATCATCAGCTTCA             GTCGTCAG GAG TTGGCGGC             TAATATTCATTATTT  50 4
CH54_RS11440 NONE
CH54_RS11445 NONE
CH54_RS11450 NONE
CH54_RS11455 2506561 .. 2506588 + -15.6  -3.70412   AGCGCTGATATCGGA        GCTGAGGGCCAC ATTT GTGACCCTCAGC         TTGCTTTATTCACTT 100 33
        feoA 2507471 .. 2507500 +  -3.5  -4.52502   TAGATTTGCTGACTC       TCGACCTGCAACC CTAA GATTTCAGGTCAA        TTCTTTATTTTTCAG  64 9
        feoB 2509922 .. 2509936 +  -2.1  -3.14132   GTGTTGCCAGCGCTC               TGGCA ATGAC TGTCA               TTGATGAGGAGAAGC  43 7
CH54_RS11470 2510211 .. 2510228 + -11.3  -2.81738   CAGCGCACCAAATGA             GATGCCC ACTT GGGCATC              TCTGCTAACATTATT  80 41
        gntX NONE
        nfuA 2513042 .. 2513060 +  -8.8  -3.64487   GGCGCAGCCACAATA             TTTCGCGC AAG GCGCGGGA             TTGTTAAGGGTGTCC  73 246
        malT NONE
        glpE NONE
        glpG NONE
CH54_RS11520 2523206 .. 2523220 +   -10  -3.33492   GCAAGCGTTGTTCAA               CACTGC TTC GCAGTG               TTGTCGCATCCATGC  77 216
        glpD 2525412 .. 2525438 + -10.3  -5.64873   AATCTGTTAAAAAAA        CCTCTTCA-CAG TTCG CTGCTGAAGAGG         TTTTTTGTTATTAAC 100 59
CH54_RS11560 2537142 .. 2537161 +  -5.7  -2.59154   ATAACTCTGGTAATA            GCCAGTG CAGCAA TACTGGC             ATTGATATAGTCTTC  51 121
CH54_RS11605 2545444 .. 2545470 + -10.2  -3.14344   ACGCCGGTTATATGA         CCTCAGAGGG GCAATAA CCCTTTGAGG         TTGCTGACAAACCTA  75 55
        gntT 2548152 .. 2548164 +  -3.3  -2.66964   TACACCACGTAACGG                TGGCC TTT GGCGA                TAATCTGCTGGGTCA  42 496
CH54_RS11630 2550699 .. 2550715 +  -4.4   -5.0133   ATAACACCATCACCG              GGTACT GTAAA AGTGCC              TTTTTTCACACCATC  77 291
        iolC 2558109 .. 2558137 + -15.4  -3.42078   TTAATACAGCTTTAC        TGGCGCTGATGT GAAAA ACGTCAGCGCCA        TTGTGCTGCCATCTG 100 43
CH54_RS11660 2559452 .. 2559463 +  -3.6   -3.8901   GCCAATGTTGCCACG                GGGT GGTA GCCC                 TTTGGTACTTTCACG  55 268
CH54_RS11675 2563472 .. 2563483 +  -5.8  -3.22774   CAGTTCCAGTAAGGT                TGCC AGCA GGCA                 TTCCTCCTCACTCTC  54 351
CH54_RS11715 NONE
CH54_RS11720 2573878 .. 2573904 +  -3.1  -4.49756   TTTTTGCTCTAGCAG        CATTAGCTGCTG AGCA CAGCA-TTGATG         TTTTACTGTTTCACA  64 132
        pitA 2576954 .. 2576973 + -11.4  -5.10004   TTTGGGTAAAGTAAA            GGCGGCCT TTTC AGGTCGCC             TTTTTACTTATTTTT  95 66
        uspA 2578518 .. 2578536 + -13.1  -5.31877   ATCAATCACCTTTGA             CGCCCGC CTTTA GCGGGCG             TTTTTTATGCTGAAT 100 65
        gdhA 2580098 .. 2580135 +  -3.5  -2.71125   GTAAATAATAAAACA   CCCATATTCTTTGAGAT AAGC ATTGATAAGAATATGGG    ATGTTTCTACCCAAT  43 37
CH54_RS11750 2581642 .. 2581665 +  -6.6  -5.03314   TGTTTAAAATCAAAA          GCGACAGCAA TAGT TTGCCGCCGC           TTTTTTAACACTGAC  85 48
CH54_RS11765 2585835 .. 2585866 +  -3.6  -2.87319   GGCTGCTTTCGCTCA      CCCCAGTCACTTAC TTGT GTAAGCTCTTGGGG       ATTTACTCAGTTGCC  44 63
        gorA 2587408 .. 2587433 + -12.7  -5.64304   TAAAAAACCTTAAAA         GGCTATAAACC GCAG GGTTTGTAGCC          TTTTTTATTGTCTTG 100 48
CH54_RS11780 2589652 .. 2589671 +  -6.3  -2.78798   CGCAGCAATCGCGCC            ACGGGCC AACAAA GGCCCGG             CTTTGACTCCCGCAT  54 159
CH54_RS11795 2593098 .. 2593114 +  -6.7  -2.75992   TACATCATAAAAAAT              TTAAAAC ATC GTTTTAA              TACTATTGACTCAGA  57 144
CH54_RS11800 2594199 .. 2594226 + -13.6  -3.14931   TCAGGACAACACCAA        TAAGCCCGGTACA TAG TGT-CCGGGCTTA        TTCATAACGACTCAA  93 93
        bcsE NONE
        bcsF NONE
        bcsG 2616994 .. 2617009 +    -6  -5.54885   TCAGTTATAAAAAAA              CGCCGG ATAA CCGACG               TTTTTTATTGATGTT  95 270
CH54_RS11950 2637148 .. 2637179 +  -5.2  -2.54193   TCTAAAAATAACTCA      GGCTAAAGATAATA ATAG TGTTATCAGTAGCC       TGACTTGAGGTAATC  48 36
CH54_RS11970 NONE
CH54_RS11975 2643006 .. 2643035 + -11.6  -3.57119   TTTAGCATGTTAATG       CCACC-GACAAGA TTCAT TCTTGTCCGGTGG       TTTCACGGATATATC  88 74
CH54_RS11990 2649658 .. 2649675 +  -3.3  -2.76964   GGATTTGAAGTCCAG             CCG-CCCC ACC GGGGACGA             TGATCTTCCATCTGG  43 479
        xylA 2656590 .. 2656625 +    -2  -4.63932   ATCTTCGGCTGATAG    TTTTATTTATCTGATG TCTG CATCGAATAGATGAGA     TTTTGTTGAAAAATA  61 29
        xylB 2658619 .. 2658631 +  -3.5   -4.5852   ATCGCCGCTGGCCGA                TAAAA TAA TTTTA                TTTTGCTTTGGATTG  66 408
CH54_RS12030 NONE
CH54_RS12035 2661052 .. 2661064 +  -3.3  -2.60508   CTCAACCAGGCAATG                GGCTG ATT CAGAC                AATTTTTAAACCATA  42 226
CH54_RS12045 2663342 .. 2663365 + -11.1  -3.57406   GAGTAGTCTATTTTG          TGTTGGGGA ATAAAC TCCCCAACA           TGTTTATAGTCGAAA  79 35
        fdhD 2674527 .. 2674543 +  -2.3  -3.06399   ACAATAAGTAAGGCA              TTGATAA TCA TTTTCAA              TATCATTTAATTAAC  42 50
        sodA 2675307 .. 2675331 + -11.5  -5.23396   ATAAAACCAAAACCA          TGCCAGCAAGG CCT TCTTGTTGGCA          TTTTTATTGCTTATT 100 80
CH54_RS12105 NONE
CH54_RS12110 2677975 .. 2678003 +  -8.8  -2.87931   TGTGTATATAAAAAA        ACCGGGGGTG GCCATGCCA CACCCCCGGC        TCTATCGAAAATAGC  66 44
CH54_RS12125 2681110 .. 2681135 +  -6.2  -3.28712   CAGCGCCATCAATAG         CTCGGCAT CTTCATATTC ATGCCGAG          TTATGACGCCCAAGG  57 304
CH54_RS12160 NONE
CH54_RS12165 2692176 .. 2692187 +    -3  -2.54634   GCCATTGGACTTGTC                GTTT TAAA AAAC                 ATTAATAATATAACA  41 209
CH54_RS12170 NONE
CH54_RS12175 2696471 .. 2696500 +  -7.1  -4.05529   TGAACTCTAAATCTG       CTCTGTGTCGGGA TCCA TGCTGGCACAGGG        TTATTTCATCCTTAT  73 31
CH54_RS12185 2698815 .. 2698836 + -10.2  -5.30155   AATAAATGATGAGAG           CCAACCTG CTCAAA CAGGTTGG            TTTTTTCATTGCTCG 100 39
        ghrB NONE
CH54_RS12195 2702287 .. 2702298 +    -3  -3.24879   GGATAACAATAAATT                TTCA TTTA TGAA                 GTTTTCACTTTTCGG  44 153
CH54_RS12200 2703566 .. 2703594 + -12.4  -5.07652   GCTGAGAATAAATAG        CTAAGGGCCGCT TATTC GGCGGCCCTCAG        TTTTATTTTAAAACC 100 44
CH54_RS12220 2707754 .. 2707766 +  -3.4  -3.05384   GAAGGTCAGTTGCCG                TGGT TCGCC ACCA                TTCGGTGAAACCAAC  45 312
CH54_RS12230 NONE
CH54_RS12235 NONE
CH54_RS12240 2711654 .. 2711686 + -10.5  -3.55444   ACGTGCAAAAGCGCA      GGGGTTCCAAGAGGG TTA CGCGCTTGTAACCCC      TTTGGCGGCTGAGGC  79 230
        rpmH NONE
        rnpA NONE
        yidD NONE
        yidC 2721932 .. 2721950 + -14.6  -4.36508   TCATAAGTATTAAAG             GGCGGTCA ATA TGACCGCC             TTATTCTTTTTATAG 100 54
        mnmE 2723408 .. 2723437 +  -2.3   -2.9356   TGCCATAGAGCTGCA       G-CAGATTATCG CTAATTT TGATAATCTGGC       TCTATGAGTCTGAAT  42 47
        fabV 2724721 .. 2724751 + -16.2  -3.70853   TCAGGGCTAATCCAG       ACAACCCGCTGTGC GCC GTACAGCGGGTTGA       TTATTCACTCATTAA 100 31
CH54_RS12295 NONE
CH54_RS12300 NONE
CH54_RS12305 2727437 .. 2727467 +  -2.5  -5.44119   CGCCGTGAGTGATAA       AAAACCCCTTTCG GCTAG CAAAAGGGGTTAA       TTTTTTTGGCATAAC  78 29
CH54_RS12315 2730298 .. 2730322 +  -7.7  -2.96722   TCTATGGTTACAGAA          CCCCCATAGCC TGC GGTATTGGGGG          GTTTCTCCGTATCGC  63 44
CH54_RS12320 NONE
CH54_RS12325 2732408 .. 2732429 + -13.1  -3.15544   TGCTAGCCCTTAGGG           TGAGCCTCA AGAA TGAGGCTCA            TTAATCCCGATGAGC  91 106
CH54_RS12330 2733273 .. 2733304 +   -10  -3.04461   AGATTATAAATACTA      CGCCCCCACCCTCG GTGT CGAATATGGGGGCG       TGTTCAAAATCAGTA  75 40
        yieH 2735634 .. 2735656 + -10.6  -4.09805   TTTATTTCGCCACCA           GCGCCATGAA CGG TTAATGGCGC           TTTGCTTATTAATGG  85 58
CH54_RS12390 2746214 .. 2746247 +  -8.1  -4.39571   GCTAATCATAAAAAA     GTCCGGTGATGCTAT TTAA ACAGCACAACCGGAC      TTTTAGATTTATCGC  80 36
        asnA 2763245 .. 2763273 + -11.8  -4.06993   TCTTTATTATTTCAA        CCCGTTATGGCT TATGC AGCTATAGCGGG        TTCTTTCATCTATGC  91 57
CH54_RS12475 2764128 .. 2764140 +  -4.1  -3.19157   CGGACATCGCCACGG                CATGG AAC CTATG                TTGATGGGCTTGCTG  48 145
         kup 2769311 .. 2769330 + -12.2  -4.67904   TTTGTCAGCCGTTTG            GGCCGTTA AACA TAACGGCC             TTTTTCACATTCATC 100 184
        rbsD NONE
        rbsA NONE
        rbsC NONE
        rbsB 2773397 .. 2773427 + -13.3  -2.62184   AAAAGCAGGGCACTA      CGCCACCGTCGCGG TAAT CTG-GGCGGTGGCG       TCATCTACAAAGGAA  90 46
        rbsK NONE
        rbsR 2775875 .. 2775885 +  -2.4  -2.50113   ATTTTGCCATCATCG                 AGCC AAT GGCG                 GTTGGTGCCATCATG  39 519
CH54_RS12535 2779770 .. 2779786 +  -3.7  -2.55668   TGCGAAACGGTTAGA              TTTCGGT TTA ATCGGAA              CTTCGTGTCCCCATC  44 138
CH54_RS12540 2779903 .. 2779940 + -10.9  -3.45839   ACATTATCAACTGAA   TATCTTAAAGATGACTT TACC AAGTCGTGTTTAAGATA    TTGCTCTTTAACAAT  82 60
CH54_RS12545 2783092 .. 2783102 +  -6.8  -4.39386   GGCTTAACCTTACAA                 CACC GAA GGTG                 TTTTGGTGATTTGAG  76 30
         rrf 2783457 .. 2783476 + -11.4  -4.83759   CCCAATAGACGAAAA            GGCTACCC TGAT GGGTGGCC             TTTTTGCGTTTAGTT  95 164
CH54_RS12565 2785075 .. 2785098 +  -3.8  -4.32436   TTAAAGATTAGTCAT          GCTCCTGTCT GCGG AGATAGGGAC           TTTTGATGATACTAT  64 30
CH54_RS12570 NONE
        dsbA 2786813 .. 2786834 +  -8.1   -4.8066   AATCGTATAAAAAAA           GGGGCTAGAT TTT AT-TAGCCCC           TTTTTCACTTATCTT  84 39
        polA 2790442 .. 2790468 + -18.1  -5.49234   TGGCTGTATATTAGC         CGCCCCAGTCA TTTAT TGACTGGGGCG         TTTTTTATTGGGTCT 100 279
        yihI NONE
        hemN 2794183 .. 2794206 + -15.4  -3.61371   GAGTGATCTGATGAT          GTCACCCTCA GTGA TGAGGGTGAC           TTTCAAATAAAATTT 100 30
        typA 2800692 .. 2800716 + -16.5  -3.58766   TTAGTTTCACTGATA          CTTAGGGCGCT AGC AGCGCCCTGAG          TTCTATCATCTGCTT 100 47
        yihX NONE
CH54_RS12625 NONE
         dtd 2802933 .. 2802943 +    -4  -4.76123   CCCAAGATTGAGGAA                 TCTA ATA TAGA                 TTTTATTGATAATTT  69 54
        fabY 2804216 .. 2804226 +  -5.4  -3.99374   TTTTTTAATTTTTAC                 CCTA TCT TAGG                 TTGTTATTAATAAGC  65 341
CH54_RS12640 2804562 .. 2804575 +  -2.4  -3.74184   TCTAGGAGGGTAAGA               CGAT GGATAA ATCG                TTATTAGATTCAGTT  49 36
CH54_RS12645 NONE
CH54_RS12650 2805989 .. 2806031 +  -9.5  -2.61912   AAGCAGCAGCGCCAG CGCCGATTACATGAATTACAT GAA ATGT--TTAATGTAATCGGCG GTTGTCACTCAATAG  70 45
        gltS 2810793 .. 2810812 +  -8.5  -3.21218   TAAGGATAGTCTTAA            GGGGCGG ACAAAA CCGCTCC             TTAATCATCAAGCAT  68 49
        ligB 2818655 .. 2818669 +  -2.8  -2.64993   TCGGCCCGAAGAGTA               ATCATC CGG GATGAG               CTTAATGTTCTGAAT  41 25
CH54_RS12710 2821934 .. 2821963 +  -9.4  -3.59979   GTGTTGTGTTATCAG       CCAATGCTC-CAG TTCAT CTGCGGGCATTGG       TTTAGCATAAAGAAA  71 71
CH54_RS22100 2826789 .. 2826806 +  -8.5  -3.21912   TGCTCGATAAGCACT             TTCAGCT CAAT AGCTGAA              TTGGTAACTTCGGCA  64 78
         rph 2828459 .. 2828476 + -11.3  -5.31456   ACAATAATTGATAAA             GGCGACT TGCT AGTCGCC              TTTTTTATAGGTTAA 100 34
CH54_RS12880 NONE
CH54_RS12885 NONE
CH54_RS12890 2849720 .. 2849734 + -11.4  -4.85433   TTATGCACACACTAA               CCGCCT TTT AGGCGG               TTTTTGCATTTATAT  95 48
CH54_RS12970 NONE
CH54_RS12975 2859928 .. 2859963 +  -6.8  -3.75024   ATAAGCCATTGTTTT    TAATGACAACTCCTGC TATT GCTGGGGTTGTCAAGA     TTCTTGCTAGTCGCC  66 91
        pyrE 2860733 .. 2860746 +  -9.5  -4.99638   TGAAAATACAAAAAA               GGGCC GTTT GGCCC                TTTTTATATGACTAT  93 54
        radC 2864042 .. 2864056 +  -6.4  -3.76373   AGAGAAATAATAATT               GATCCT TTC GGGATC               TTTAGCTGTTCGGGA  64 39
        rpmB NONE
        rpmG 2864733 .. 2864748 + -11.8  -5.60689   GGTGGATTAAGAAAA              CCCGGC CTCG GCCGGG               TTTTTTATTATATAA 100 51
        mutM 2865982 .. 2865994 +  -4.1  -4.17048   CTTCCACATTCTTCA                GTGAT GCA GTCAC                TTGTTTTGCCAAGGC  62 405
         kbl NONE
         tdh 2874460 .. 2874478 +  -8.9   -3.9407   TTGCCATTAACCTCG             GCCATCA GATGA TGATGGC             TTCGTTTTTATTAAG  79 193
CH54_RS13080 NONE
        grxC NONE
        secB NONE
        gpsA 2881117 .. 2881143 + -11.6  -4.06419   GGAATTAGGGTGTCA         GTGGCTTCGG TCGTTCC CCGAAGCCGC         TTGTTTATGGGCAGG  90 108
        cysE 2881990 .. 2882015 + -11.8   -3.1085   GCGACGGCATCTGAT         CCCCTGCGTC CTTGAA GCCGCAGGGG          TGTTGGCTACGTTCG  83 27
         ada 2883958 .. 2883991 + -13.9  -4.64076   AAAGAACGCCAGAAA     TAGGCTGCCCGATCCA ATA TGG-TCGGGCAGCCGG     TTTTATCATTTCATT 100 23
        cpxP 2886816 .. 2886834 + -14.6  -6.08563   CCATCCCTGTCTTTC             GCCCTCCA TGA TGGAGGGC             TTTTTTTTGTCTCTT 100 80
        fieF 2887838 .. 2887854 +  -4.4  -3.11687   CTATTGCTACATTAA              CTACAG GTAAA CTGTGG              TTACATAATGGTTCA  51 68
        pfkA 2889054 .. 2889071 + -10.5  -5.64421   TGCTCGATCGCTAAG             CCCTCGC AATT GCGGGGG              TTTTTTATTTACAGT 100 51
CH54_RS13140 2890293 .. 2890320 + -14.2  -4.87892   GCAGTAGTTGACTCA        GCGCCTGTAAGT TAAT GCTTACGGGCGC         TTTGTTTTATTAGCC 100 87
CH54_RS13145 2891396 .. 2891406 +  -3.2  -3.74549   ATCAGTTGCTTAGAA                 CCTG AAT TAGG                 CTTTTTTAGCTTTTG  52 40
CH54_RS13160 2893524 .. 2893537 +  -9.5   -3.5764   TTATAAGGTAAAAAA               GGGCC ATAT GGCCC                TTTACCCATACGGTT  77 49
        emrD 2895877 .. 2895902 + -13.3  -4.15703   AATACTGAACTAAAA         TGGGCGCGACG TGAA TGTTGCGCCCA          TTATTGTTTATCGCG 100 50
        zapB 2900619 .. 2900638 + -12.2  -4.90266   TACGAAAGGCAACAA            GGGCGATA TTGA TATCGCCC             TTTTTAGTTGATAAA 100 107
        rpmE 2909285 .. 2909299 + -12.8  -5.42514   CCGTCAGACGAAAAA               GGCGCC TTA GGCGCC               TTTTTTCATTTCTAC 100 45
        metB NONE
CH54_RS13245 2913786 .. 2913801 +    -6  -3.10558   CTGCCCGCCGCAGGG              GAGGCG AAAC CGCCAC               ATTTTCCCCTATATG  58 61
        metF 2914890 .. 2914903 +  -9.5   -4.2679   ATAGTTTTTTAAAAA               GGGGC GGTG GCCCC                TTTTAATCCCCATTG  89 37
        argC 2920977 .. 2920988 +  -2.2  -3.51948   GAGGGTTGTAACAGA                GTCG AAAC TGAC                 ATTTTTATCCAATTA  47 48
        argB 2921805 .. 2921815 +  -2.6  -4.82901   CCTAATACTGTTTAT                 TTTA TTA TAAA                 TTTTTATAACCCAAA  65 36
        argH 2923364 .. 2923386 + -13.5   -4.3208   TATTAATATTAGCAA           TGGGCCACT TTTAT AGTGGCCCA           TTTTACATTATAGAA 100 50
CH54_RS13280 2926435 .. 2926452 +  -6.3  -3.51475   ATTTGTGGGTCGAAG             TGGCTCA ATGA TGAGTCA              TATATTTGTTGTTTA  62 117
CH54_RS13285 2927191 .. 2927202 +  -2.2  -3.18044   GGCATATATTGCTGG                CGGT GGTT ACTG                 TAATTTTATCCCGTA  43 115
CH54_RS13290 2928042 .. 2928067 +  -7.8  -3.75024   TTTATTCCGTAGAGA         TATATAACTC AATGGC GAGTTATATA          TTATTAATGGTCAAA  70 151
CH54_RS13295 NONE
CH54_RS13300 2929527 .. 2929562 +  -3.4  -2.91822   AATATTACCGTCATA    CCTTGGATGATACTGGT TAT ATTTGTATCA-CTAAGG    GTTTAAATTATTGTA  44 77
CH54_RS13305 NONE
CH54_RS13310 NONE
CH54_RS13315 2933847 .. 2933863 + -10.8  -3.90112   TGTCAGCAACCTAAA              CCGGGC ATAAA GCCCGG              TTTAGTTAGCGAGAA  86 184
        oxyR 2937416 .. 2937460 +  -6.5  -5.11063   CGCCATGGTCGGGTA GTTGAAGGTAGTATTAACGAA ATA TTCGATAGTATTGCCTTCTCC TTTTTGTTCCATGAT  87 71
        fabR NONE
CH54_RS13345 2940094 .. 2940122 +   -14  -4.06892   CCAATATCTCTAAAT        CGAAAGGGCAAC ATTGC GTTGCCCTTTTG        TTTGTGTCCGATTCT 100 53
        btuB NONE
        murI 2944724 .. 2944753 +  -2.9   -3.5393   GAGTGACCAAAGCAG       TACACATTTGAAC TTCG GTTCGAATGCATA        TTTGCAGAAAGTAAT  48 385
CH54_RS13365 2946421 .. 2946444 +  -5.2  -3.81929   TAACGAGCAAATAAG          GCCGGGCTGA GAAA TTAGTCGGGC           TTTAGTACCTTGTTG  61 90
CH54_RS13370 2946584 .. 2946599 +  -2.4  -3.49475   TTTATAACAATAAAC              GTCGCG TGAC TGCGCC               TTGTCTGAGAATGAG  47 74
CH54_RS13375 2946730 .. 2946776 +  -8.3  -3.45839   TCCACCATATAAAAC TATTTCAAAACGTACTGCGGTC GCAA GACT-CAGTGTGTTGTGAAATA TTGCTCTTTAACAAT  72 34
CH54_RS13380 2949841 .. 2949851 +  -6.8  -4.39386   GGCTTAACCTTACAA                 CACC GAA GGTG                 TTTTGGTGATTTGAG  76 30
         rrf 2950111 .. 2950123 +  -6.9  -4.18018   TGGTGACTAACAAAA                TCGCC AAA GGCGG                TTTTGCATAGCGCGG  73 69
CH54_RS13390 2950280 .. 2950307 + -12.9  -3.05536   CGCCACTTATTTAAA        TTATGCCTGCT TATCTT AGCAGGCATAA         TGTTAAGCATGATTT  91 36
CH54_RS13395 2950408 .. 2950427 + -11.4  -5.80817   CTGCCATACAAATAG            CCCTTCGC GAAA GCGAGGGG             TTTTTTTATGTTAAA 100 35
CH54_RS13405 2952577 .. 2952592 +  -6.8  -3.40867   TGTTCAAATCTGCTC              CCGGCA AATT TGTCGG               TTGCTTGCTAACTAC  62 167
        ilvL 2954650 .. 2954673 + -13.8  -5.71983   TTAATCACAAGAAAA          CCCCCGCACC GAAA GGTTCGGGGG           TTTTTTTATCATTAC 100 51
        ilvG NONE
        ilvM NONE
CH54_RS13425 2957679 .. 2957689 +  -6.8  -3.58726   GTGGTTCGTTCGCCA                 CCTG CAA CAGG                 TTATATCTGCAACAA  64 71
        ilvD NONE
        ilvA 2961220 .. 2961234 + -11.4  -5.00616   AAATGCTTCAATCAA               CGGCTC ATT GAGCCG               TTTTTTGGGCACGCA 100 100
        ilvC 2963864 .. 2963891 +   -20  -6.02914   ATCGACTTAAAACAG        GCCGCTGCCATT ATTT AATGGCAGCGGC         TTTTTTTTATCTCAA 100 84
CH54_RS13450 NONE
CH54_RS13455 2967444 .. 2967470 +  -6.6  -4.36774   ATCTTTAAATAATAA         TATAATCCGTCG CTC TGGCGGTTTATA         TTTATGTTATTAATT  76 46
CH54_RS13460 2968139 .. 2968165 +  -6.6  -3.77196   ATAGTTAAGTAATAA         TATAAGCCGCCG CTC TGACGGTTTATA         TTTACTACATCATAA  66 46
CH54_RS13465 2968817 .. 2968838 +  -5.1  -6.02345   TCTTGTAAATAAATA           GGCCTTGCT AATT AGTGAGGTC            TTTTTTTTATGATTG 100 312
CH54_RS13470 2969739 .. 2969759 +  -3.2  -4.65895   TAAATGGCAAGGCTA            CAGAGCTG TAAAT CGACTCTG            TTTTTGGCTAACCCA  64 497
         rep 2979539 .. 2979568 +  -2.1  -4.56775   ATCGATCGTATTACT       CTGAT-TTTGCAGC AAA GCCGCAAGTAGCAG       TTTTTGAGCGGGAGT  63 340
        trxA 2982554 .. 2982566 +  -6.3  -4.08216   AAACGAGCGACAGAT                TGGTT ATA AACCA                TTTTGAACCGCGTGA  69 91
         rho 2984407 .. 2984426 + -10.7  -5.22039   CTAAATTAATCAAAA            CGCCACG CTCAGA CGTGGCG             TTTTTTGCATTTGGG 100 47
        wecA NONE
        wzzE 2987023 .. 2987062 +  -3.7  -3.49475   TGATCAGTAAAAGAT TGACCAGTAA--TGGGCGCA TTG TGCGCCCAACTTGCAGG-CA TTGTCTGCGGCTAAC  52 82
        wecB NONE
        wecC NONE
        rffG 2990592 .. 2990618 + -10.3   -3.9392   TGCAAAGGTATCTAA        CGTGCTGCTTCA GTTT TGAA-CAGCACG         TTGTTTCAGGTCAAA  84 66
        rfbA NONE
        rffC NONE
        rffA NONE
        wzxE NONE
CH54_RS13580 NONE
        wzyE NONE
        rffM 2997911 .. 2997936 + -11.9  -3.30441   TAATAACCTTTTTGG         CTTCAGGGTCA AGTT TGGCCCTGAGG          TTATAAACCCTCCTA  86 38
CH54_RS13595 2999651 .. 2999662 +  -4.4  -2.74605   TAGGGCGGAGTGAGG                GCTA GCAA TAGC                 TGACTTTTGCGGCAG  47 51
CH54_RS13600 2999928 .. 2999944 +  -3.7  -2.56596   TGTAAGTAGTAGGAA              GTTATGG TGG CTATAGC              TCAGTTGGTAGAGCC  44 103
CH54_RS13605 NONE
CH54_RS13610 NONE
CH54_RS13615 3000277 .. 3000291 + -12.8  -5.79526   CAATTTCAGAAGAAA               CCCCGC AAT GCGGGG               TTTTTTTTCGCCTGT 100 39
CH54_RS13640 3008703 .. 3008720 +  -7.7  -3.06569   CTTGAACAGTAAAAA             GACACGC CAAA GTGTGTC              CTTTTCGCAGATTAC  63 41
CH54_RS13650 NONE
        dapF 3010498 .. 3010514 +  -2.4  -3.44325   TCATGCAACTCGAAT              TATTTA GGGTA TAAATA              TTCATTATGACGGGT  47 140
CH54_RS13660 NONE
        xerC NONE
        yigB 3012911 .. 3012928 + -12.7  -3.85184   GGAATGATGTTAAAA             TCGCCGG AAAA CCGGCGA              TTTGGCTATTTTCCC  93 73
        uvrD 3015231 .. 3015247 +  -9.5  -2.64803   CAGTTTTGCATCGGT              TTCTGCT TGT AGCAGAA              TGGCTTTGCCCATCC  66 130
CH54_RS13685 NONE
CH54_RS13690 3018233 .. 3018254 +  -8.7   -5.2112   GCAGGATACACAAAA           CCGAAGTCG AAGC TGGCTTCGG            TTTTTTACTGATATT  93 107
        corA 3020564 .. 3020574 +  -6.8  -3.12999   CTTGATAACTAGGCA                 CGCA GCT TGCG                 TTGGGTGTAAAGTGC  60 200
        pldA 3023080 .. 3023112 + -14.2  -2.86164   GGCGTTAGAAAAGTT     TCAGACACAGGCCGG TTCA CCGGCCTGTG-CAGA      TCTCATAGTTGGGGA  93 49
        recQ 3024985 .. 3024995 +  -5.4   -3.4529   TCGCCTTTCCTGCTA                 TGAG AAT CTCA                 TTATGCTAATGCTAT  58 45
        rhtC 3026006 .. 3026016 +  -8.2  -2.92618   CAAGTCCAGCGCCCC                 GGCG GCG CGCC                 ATTGTTGTATGCCAA  63 413
        pldB 3027559 .. 3027570 +    -3  -2.97825   CACCAGAGGTTAGAA                CATA CCGC TATG                 TATCATGTTGTTGCT  43 51
        yigL 3028401 .. 3028425 + -11.5  -4.46675   TTGCAGTAAAAAAAA          TGGCGCACT GTAGATG AGTGCGCCA          TTTCTTATATTAAGT  93 49
        glpA NONE
        glpB NONE
        glpC 3035664 .. 3035681 +  -8.3  -3.07043   ATAGTCAAAGACAGA             GCGCGGG TTTA CCCACGC              TCTTAGGCTGATGAC  67 40
        tusA 3038109 .. 3038120 +  -5.8  -3.02166   ACTGCCCATCGCGAT                GCCA ATAC TGGC                 TGCTTTCATTGCCGG  53 381
CH54_RS13795 3041664 .. 3041676 +  -5.5  -2.71712   AAACCTTAAATCCCT                CTCGC CAA GTGAG                CTTTAGCGAGCAAGA  51 32
CH54_RS13800 3042398 .. 3042408 +  -2.4  -3.40878   GATATTAATCCACAT                 GGTG TTG CTCC                 TGTTCTTCAGCTGAT  45 343
        ftsY 3044785 .. 3044795 +  -3.2  -2.72511   CCGAGAGGATTAATA                 CGGA TGA TTCG                 CTTTGAACAGGTCAG  43 28
        ftsE NONE
        ftsX 3046594 .. 3046604 +  -3.2  -3.16267   CAGTGAAATGATAAG                 GTGT CCA ACGC                 TTGAATCTGCTTAAG  46 217
        rpoH 3047623 .. 3047649 + -16.8  -5.38958   ATGACGTAACATGAA         GGGCGATATTAA TAA TTAATATCGCCC         TTTTTCTTTGTGCAT 100 105
CH54_RS22120 3050569 .. 3050580 +  -7.2  -2.54896   GATAAAGCCCCACGC                CGCG CCGA CGCG                 TCACTTCCCTGACAC  56 191
CH54_RS13850 3052406 .. 3052426 + -11.1   -4.7497   CTTTTACCAACTGTA            TCCCCCCAA GTT TCGGGGGGA            TTTTTCCTCACTGCG  93 94
        livH NONE
CH54_RS13860 NONE
        livG 3055478 .. 3055495 +  -2.1  -4.67353   TTTGGGCGAATAACT             TATTTTT AAGT AAAAGTA              TTTTTAGATAAATAA  64 28
        livF 3056689 .. 3056701 +  -9.1  -4.40358   GGGGCATGTAAACCA                CTGCC ACC GGCAG                TTTTATCGAGTAGAT  83 477
        ugpB 3064126 .. 3064144 +  -6.6  -3.47078   TATTTGTCAGTTTGG             GGTTGGGC AGT GCCCGGTC             TTCTCATGTACGATG  64 57
        ugpA NONE
        ugpE NONE
CH54_RS13920 NONE
        ugpQ NONE
CH54_RS13930 3068981 .. 3069020 +  -5.2  -4.48713   GAAGATGAGTTTTCA  CC-AATGAATCATGCTC CTACCGT GGGTATGATTCGTTTGG  TTTATTATTAATCAG  71 46
CH54_RS13935 3070316 .. 3070326 +  -4.6  -4.63932   TGCCAAATCTTCCGG                 CTCG ATG CGGG                 TTTTATTGGCCAATG  71 327
        metE 3073351 .. 3073377 + -10.1   -3.9749   CTTCCTTGTAGGCTC        GAG-CCGCGCCA TCCC TGGCGCGGACGC         TTTACTCTTCTACCT  86 139
         udp 3075580 .. 3075605 + -13.3  -4.44046   CAATGAATATCATAT         GAGCGGGTCAG TTTA CTGGCCCGTTC          TTTATTTCGGCTGAG 100 81
CH54_RS13960 3076529 .. 3076548 +  -9.3  -4.59853   AATTTGTCGTGTCTT            GAGCCAC CACTGA GTGGCTC             TTTTTAACCGCTTAA  88 87
CH54_RS13965 3078496 .. 3078523 +  -9.2   -5.4505   TAGCTTTAGTCCTAA        TGAACGGTCGGA ATCT TCTGGCCGTTTA         TTTTTTGTTAAGCAA  95 54
CH54_RS13970 NONE
        rmuC NONE
        ubiE NONE
CH54_RS13985 NONE
        ubiB 3084015 .. 3084033 +  -3.8  -3.25169   TATTGGCTTGGTTTA             TTGGTTGG CGG CGAACCAG             TTAGTGACTTATTGC  48 3
        tatA NONE
        tatB NONE
        tatC 3085968 .. 3085984 + -11.5  -3.95435   TACTTTGATATTTTA              GCCGCCT TCT GGGCGGC              TTCTGTTTTGGGACA  90 46
        tatD 3086760 .. 3086780 +  -8.9  -3.75153   AAACTGATGAAAACG            CCCGCCGGA TTT TCCGGTTGG            TTTGAGTTAGGAGAA  76 0
        hemB 3087844 .. 3087875 +  -9.5   -4.3255   GGTAGTAATAAAAGT      CGCAGGGTAGGTA CTGAGA TACCTACCTTGGG       TTTGTTAATTAAGAG  90 47
        ubiD 3090145 .. 3090156 +  -3.6  -2.82606   GACAAAGAGACGAAA                CGCT AACC GGCG                 TCCATTTTGTCCTTA  44 20
         fre 3090969 .. 3090992 + -15.4  -3.15885   AACTAAACTCCAGTC          TAAGGGCCTG TATT CAGGCCCTTA           ATGTTTTTTGGTTAT 100 88
        pepQ 3096021 .. 3096033 +  -3.3    -4.015   CGTGACCTGAAGCTG                GCCTG ATG CAGCC                TTATTTAATACCTGC  56 20
CH54_RS14050 NONE
        trkH NONE
        hemG 3099061 .. 3099090 +  -2.9   -3.5393   GAGTGACCAAAGCAG       TACACATTTGAAC TTCG GTTCGAATGCATA        TTTGCAGAAAGTAAT  48 403
CH54_RS14065 3100806 .. 3100822 +  -3.7  -2.55668   TGCGAAACGGTTAGA              TTTCGGT TTA ATCGGAA              CTTCGTGTCCCCATC  44 138
CH54_RS14070 3100952 .. 3100989 + -10.9  -3.45839   TTATGAACTCAAAAG   TATCTTAAAGATGACTT TAAC AAGTCGTGTTTAAGATA    TTGCTCTTTAACAAT  82 73
CH54_RS14075 3104054 .. 3104064 +  -6.8  -4.39386   GGCTTAACCTTACAA                 CACC GAA GGTG                 TTTTGGTGATTTGAG  76 30
         rrf 3104350 .. 3104370 + -13.3  -5.76633   AAGAAAAAGAGAAAA            GCCTTCTGC TGC GCAGAGGGC            TTTTTTTATGTATCC 100 95
        murB NONE
        birA 3106470 .. 3106491 + -10.1   -3.0641   TAGTCAATAAACTAA           GCGGGCAGT TATT ACTACCCGC            TATCTACTATTTTCT  75 38
CH54_RS14110 3108676 .. 3108686 +  -5.4  -3.14132   TAATCAGTAGGTCCC                 GAGT TCG ACTC                 TTGGTGCCGGCACCA  54 0
CH54_RS14115 NONE
CH54_RS20925 3109060 .. 3109077 +  -6.3  -2.84126   CTCTCGATGAAGAGT             GAAGTGGC CAA GCC-CTTC             CTTTCAAGTTTCTGC  55 111
CH54_RS14120 NONE
CH54_RS14125 3109328 .. 3109341 +  -6.7  -2.57468   GTGTTATGGATTCAG               CAAGC ATGC GCTTG                GTTGATGTGGTGAAA  56 74
         tuf 3110597 .. 3110614 + -11.3  -4.93318   CGACATGTGATAAAA             GGGCATC ATTT GATGCCC              TTTTTATACGTTGTC  95 50
        secE NONE
        nusG 3111783 .. 3111811 + -16.2   -5.2853   TTGAGTCTTGTCTTA        GGCGCGAAATTA CAATA TAATTTCGCGCC        TTTTGTTTTTAGATG 100 66
        rplK NONE
        rplA 3113097 .. 3113133 + -14.6  -2.82717   GCTTTTATCGCTTTA    CGTGGGCGTAAGGTTT GTCTA GAATCTTACGCCCATG    CTTCTGTTGATGGCT  95 50
        rplJ 3113937 .. 3113947 +  -4.6  -3.34895   CGTGACCAGAAAGAA                 GCTG AAG CGGC                 TTAATTCGCCCTCAC  52 11
        rplL 3114428 .. 3114453 + -14.1  -4.64766   AACTTATAGGCTGAT         GGCTGGTGACT TTTT AGTCATCAGCC          TTTTTGCGCTGTAGG 100 64
        rpoB 3118771 .. 3118809 +  -2.5  -3.23216   AAGAGTAATTCTTCT  CCAGACAGCAGACTTT GACAGCCG GGAGTCTGCTGG-TGG   TTCGTACTGGTCACA  44 33
        rpoC 3123132 .. 3123149 + -10.5  -6.17184   TCACCAAAGTAAAAA             CCGCTCC TTTC GGGGCGG              TTTTTTTTTGCTAAT 100 53
        nudC NONE
        hemE NONE
         nfi 3132453 .. 3132464 +    -3  -3.03865   GATTTGCTTGGCAAG                CATA GGGA TATG                 ATTTAATTTCGGGTA  43 8
CH54_RS14225 NONE
        hupA 3133602 .. 3133614 +  -4.7  -4.99043   ATAATAAACAAGGGG                GTGGC AAA GCCCC                TTTTGTTTATGCAGC  74 57
CH54_RS14235 3134571 .. 3134602 +  -2.8   -3.7282   TTGCTATTCAGTTTG      GTACCGGCGTGGAA CACT TTCCCCTCCGCCAC       TTCTTGCTGGGGTAG  51 320
CH54_RS21835 3138004 .. 3138033 +  -2.9   -3.5393   GAGTGACCAAAGCAG       TACACATTTGAAC TTCG GTTCGAATGCATA        TTTGCAGAAAGTAAT  48 35
CH54_RS14250 3139749 .. 3139765 +  -3.7  -2.55668   TGCGAAACGGTTAGA              TTTCGGT TTA ATCGGAA              CTTCGTGTCCCCATC  44 138
CH54_RS14255 3139882 .. 3139919 + -10.9  -3.45839   ACATTATCAACTGAA   TATCTTAAAGATGACTT TACC AAGTCGTGTTTAAGATA    TTGCTCTTTAACAAT  82 60
CH54_RS14260 3143071 .. 3143081 +  -6.8  -4.39386   GGCTTAACCTTACAA                 CACC GAA GGTG                 TTTTGGTGATTTGAG  76 30
         rrf NONE
CH54_RS14270 NONE
         rrf 3143555 .. 3143589 + -13.7  -3.01365   CAGGTATCAAATAAA     GTAAAGACCCCATGC CAAAA GCGTGGGGTTTTTGC     GTTTCTGCTATCCTG  93 36
        metA 3144884 .. 3144904 +  -7.5  -4.49838   CTAAATGTCAATAAA            GGCGGCT GAATCGA GGCCGCC            TTTGTATTTATTGTT  81 53
        aceB NONE
        aceA 3148233 .. 3148252 + -13.6  -3.08996   AGTGTTTTTTATCAT            GAGCCTGC ATAT GCAGGCTC             TGTTCCGTAGGGCTG  93 58
        aceK 3150270 .. 3150311 +  -2.1  -3.21747   TTCGTGGTGTTCGTC GAACAGGCAGGCGGCGATGC AGC GCAG-GCCGAGAGCATGTTC TTCGTCGTCAAATGA  43 290
        metH 3154962 .. 3154986 +  -8.6  -5.14965   TTCGGAAAAGAAAAA          GGAGATAACC GTATA GGCTATCTCC          TTTTTTAATCACACT  90 56
         pgi 3166411 .. 3166432 + -14.5  -5.40072   GATCCGCGCTTATTA           GCCCCTTAC TGAT GTAAGGGGC            TTTTTTTCGGCCCGG 100 61
        psiE 3167302 .. 3167319 +  -4.1   -3.5764   AAGCTGCGGCTTCTT             CCAGTGA GTTA TCAATGG              TTTCGAAATAACCTT  52 441
        malK 3172731 .. 3172742 +  -2.2  -3.53811   CGGCTGTACCAAGAA                CTGG GCGT CTAG                 TTTCCACGACGTCAA  47 14
CH54_RS14360 3174097 .. 3174118 + -13.7  -3.84185   GTAACAGCAGTGATA           CAGCCGTCC TTTA GGGCGGCTG            TTCTGTTTCGATGAG 100 37
        malM 3175193 .. 3175210 + -11.3  -5.28481   TATGGCTGGATGATT             GGTGTGC CTTG GCACACC              TTTTTTCGTTGGGTC 100 58
CH54_RS14370 3178540 .. 3178550 +  -2.4  -3.33162   AGTAACCTGATGTCG                 CGGG ATG CCCA                 TTCTGCGCTACAATG  45 74
        ubiC 3179106 .. 3179116 +  -8.2  -3.93578   CTGAAGTTTTTTTAC                 CGGC TTC GCCG                 TTGTATTTGATTTAA  73 0
        ubiA 3180059 .. 3180081 +  -7.7   -5.4182   AGACAGTTAAAAAAA           TGGCCAGAT GATGA ATCCGGCCA           TTTTTGTTTATGATT  93 54
CH54_RS14390 3183101 .. 3183116 +  -3.2  -5.12971   TGCTGTTGATGTAAA              CAGTGA TTAA TCCCTG               TTTTTATTCACTCTT  72 45
        lexA 3183816 .. 3183853 + -10.1  -3.98683   ATCTGATTTTAACGT   TTATTTATATACCCTTC AACG GAAGGGTATATAAAGCA    TTTAATTCCTCTAAT  86 35
CH54_RS14400 3184366 .. 3184379 +  -8.1  -3.11732   GACCACAGTAAATAT               CGCTG GTAA CAGCG                TTAAATGGATTTAAA  65 17
        dusA 3186543 .. 3186557 +  -2.8   -5.4251   ACCATGCCTGCCTAT               TTCCCT AGC AGGCAA               TTTTTTGTCTATAAG  78 68
        pspG 3187170 .. 3187210 + -13.6   -4.4009   TGCATCAATGAAACA GTAA-AATCAGAGCCTCGA ATAA TAGAGGCTCTGATTCTTAC  TTTTATAGCGTAAGA 100 259
        dnaB 3190455 .. 3190486 +  -7.2  -3.16359   AGCTACGCTCACGCA      CCCGAATCACTGAC TTGT GTCAGTTCATCGGG       ATTTGTTCGCTTGTT  63 73
         alr NONE
CH54_RS14440 3192921 .. 3192938 +  -9.9  -5.88476   GCTTCTAGTTTCTAA             GGCGATA GCGA TATCGCC              TTTTTTATTTGTTTT 100 46
CH54_RS14445 3193582 .. 3193616 + -10.1  -3.06362   TGAGGGCTAAAAAGA    GC-CTCTGGGACAGAGA GTT TC-CTGCCCCAGAGTGC    TAGTTTGATGTTTTA  75 38
CH54_RS14455 3197451 .. 3197468 +  -4.8  -5.31275   GACTGAGAAATCAAA             CCCAGT GTAATA GCTGGG              TTTTTTATACTGACC  83 55
CH54_RS14470 3199401 .. 3199419 +    -6  -4.91429   TAGCTAGATAATCGT             TTGCCTTA CAA TAAGGCTA             TTTTATTTGCCATTT  82 135
CH54_RS14475 3201088 .. 3201112 + -13.7  -3.29144   ATCTAAGCTCTCTGA          TATTGGGGGTA TCC TGCCCCCAATA          TTGTCACCAGACTAA  95 35
CH54_RS14480 3202951 .. 3202972 +  -6.5  -4.86731   TTAATTCGCCTTAAA           CCGGTGACT CATC AGTGGCCGG            TTTTATTTCAACCAA  82 37
CH54_RS14490 NONE
CH54_RS14495 3205301 .. 3205315 +  -3.6  -3.61806   GAAATTCGGATTTTT               TGAATT CCC AATTCG               TTATCTAATTCCTCT  52 206
CH54_RS14500 3206947 .. 3206962 +  -8.2  -4.96106   TTAGATAATAAAAAA              CCCGGT GAAT GCCGGG               TTTTTCATATTTATG  86 54
CH54_RS14535 3214836 .. 3214859 + -10.2  -4.56597   TCACCTAACAAAAAA          GGCGCGCTCC GTGT GGAGTACGCC           TTTTTAAACAACAAC  91 44
        csrD 3227206 .. 3227218 +  -5.5  -3.49668   TTACGCCGGTCGTTG                CGCAG AAT CTGTG                TTGTGTCGAGGGTTT  58 165
        mreB 3228537 .. 3228550 +  -6.7  -3.78034   ACGAATTCGGATGCG               CTGAC ACAG GTCAG                TTATTCGTGTGAGTG  66 118
        mreC NONE
        mreD NONE
CH54_RS14615 NONE
         rng NONE
        yhdP NONE
CH54_RS14630 NONE
        tldD 3238761 .. 3238779 +  -6.8    -3.767   GAGTAGATCGGATTA             TTCTCAAT TAA ATTGAGAG             TTTCCTCGCTAAATC  66 310
        aaeX NONE
        aaeA 3241178 .. 3241189 +  -5.8  -2.79327   AGTGAAATTGATGCA                TCGC CTGC GCGA                 GTTTGGCTAAGATGA  52 4
        aaeB 3243309 .. 3243328 + -13.6  -2.97408   GAACCATCCTTCCTC            GCCCTCCA CTGA TGGAGGGC             ATTATTTCCCTCAGG  93 178
CH54_RS14660 NONE
CH54_RS14665 NONE
CH54_RS14670 3245759 .. 3245779 +  -6.1  -4.17132   CAGATACTGGAAAAT            CTGGCGGAA TGA TTTCGGCAG            TTTATTGGCAGCTTT  69 97
        pmbA 3247799 .. 3247815 +    -8  -6.21477   GCTGTGAATCTAAAG              CTGGCA TCTGT TGCCAG              TTTTTTTTTGCTCTT 100 50
        cybC 3248842 .. 3248864 + -10.4  -3.03243   AACATAAAAACAACA           CCCCCACGCC ATA GGAGAGGGGG           TGTTCGAAAATAGCT  75 525
CH54_RS14695 NONE
CH54_RS14700 NONE
CH54_RS14705 NONE
CH54_RS14710 NONE
CH54_RS14715 NONE
CH54_RS14720 NONE
CH54_RS14725 NONE
CH54_RS14730 NONE
CH54_RS14735 3256181 .. 3256214 +  -8.2  -2.81045   AATAATGTGAGGTAT    GC-G-CCCCCTG-CGGC CAT GCTGTCAGGGGGACAGC    TAATATTCTGAATAA  62 36
CH54_RS14740 3258249 .. 3258270 + -11.6  -3.32844   ACCTCAACCGCCAAA           GGGGTCAC AAGCGC GTGACCCC            TTATGGAATCCCCGC  85 104
        treR 3263136 .. 3263149 +  -6.7  -3.73775   ATCTTGAACCCAAGT               TGGGA ACGT TCCCA                TTTCATAAAAATAAA  66 146
        treB 3264755 .. 3264780 + -15.5  -2.80245   TCTGAATCCTGAACC         TCCGCCAGGGA TTAT TCTCTGGCGGA          ATTATATTCAGGTGA  95 36
        treC 3266945 .. 3266958 +  -3.1  -3.08224   GAGCTGAAACGTCAT               CGG-CT ACC AGACCG               GTTTTCGGATCAACT  43 446
        mlaF NONE
        mlaE NONE
        mlaD NONE
        mlaC NONE
        mlaB 3281153 .. 3281181 +  -5.2  -5.04868   AGCTAAAGTTTTTAA       GCCCCTG-AGCGT AATA ACGAAACAGGGGC        TTTTCTTTAGTTTCA  79 92
        ibaG 3281533 .. 3281555 +  -3.5  -4.15044   CTGTTGGCTTCTGAA          TTGCCT-ACA GGTT TGTCAGGCAG           TTTCTTAAGCGGGCA  59 43
        murA 3282961 .. 3282990 + -10.8  -5.51165   CCGCCCTATAAAAAA       TGCCAGCC-GGTG AGTGA CATCAGGCTGGCA       TTTTTTTGCGATTTT 100 68
        zapE 3287901 .. 3287919 +  -7.4  -2.55267   ATGCTATTCTGTGGT             GGGCGA TTATTCT TCGCCC             TAACTTAACATGTTT  59 97
        rplM NONE
        rpsI 3289034 .. 3289050 + -13.7  -6.11392   GATTAATGGTAAAAA              CCCGGTG TCT CACCGGG              TTTTTTTATTTGTTT 100 62
        sspA NONE
        sspB 3290581 .. 3290604 + -18.2  -4.07535   CGAGCAAATGTATTA          TCAGGGCGGC TTTG GCCGCCCTGA           TTATTTCTGCCAATT 100 55
CH54_RS14925 3299077 .. 3299087 +    -4  -4.12198   ACAATACCTCATTGT                 GATT TGC AATC                 TTTTCCACACTTCTG  59 247
        arcB 3301654 .. 3301666 +  -6.3  -3.37053   AGCAAATGTAAGCGC                TCTTG TTA CAAGA                TTCATTAAAATATGT  60 172
        elbB NONE
        mtgA 3303128 .. 3303155 +  -9.9  -2.72838   CAGTTAGATTAAGAA        AACGGGCTTAG ATTGCG CTAAGCCCGTA         TCAGTTTGATTCTAT  70 29
        rsmI 3308393 .. 3308405 +  -3.3  -3.05816   AGTAATGTGACTATA                ATCCG CCG CGGAG                TTGACTAGACAGTCG  45 36
        rnpB 3308798 .. 3308855 +   -13  -4.91285   CTTTAAAAACAATGA GTTGGTGTGTCCCGTC-TGCATTTCAC ATTGA GTGGGATACATGATGGGATACATCAAC TTTTGTTCTCTTCCT 100 43
CH54_RS22130 3310522 .. 3310539 +  -5.5  -4.16842   AAATATCTTCTTACT             GGGGC AACTACCA GCCCC              TTTCTTCACAATGGA  67 57
CH54_RS14990 3313164 .. 3313175 +  -5.8  -3.30006   TGAATACTCCACCTT                TCGC TTTA GCGA                 TTGCTATACCTTCCT  57 418
CH54_RS15000 3314907 .. 3314926 + -13.6  -3.36273   GCAGTTAGATTCAAA            GTTGGGGC TTAG GCCCCAAC             TTCCTCTTAGAACAC  95 42
CH54_RS15045 NONE
CH54_RS15050 NONE
CH54_RS15055 NONE
CH54_RS15060 3325834 .. 3325849 +  -6.8  -2.81133   CAATCAGCAATGCCC              GCAGGG GAGT CTCTGC               TGTAATCACTAAATG  54 149
CH54_RS15070 3328306 .. 3328324 +  -4.5  -3.54129   CTTCGGTCAGTTGAT             CACCGGT CAAAT AGCGGTG             TTTCCCCAGAATGTG  55 365
        uxaC NONE
CH54_RS15135 3339384 .. 3339394 +  -2.4  -3.12668   AGTGGTATGAGAGTT                 GCAG TCG CGGC                 TTACATCTAAGAGTC  43 5
CH54_RS15140 3340933 .. 3340962 +  -9.5  -4.11412   TTGATTAATATGAAA       CGGTGTTTTATTA TTTT TAATAAAATGCCG        TTTGCTTATTAATTA  86 53
CH54_RS15145 3341992 .. 3342008 +  -6.6  -3.37879   GCGCCCAATGGAATG              GATACC GAATA GGTATC              TTCATTCAAATTCAT  59 456
        rlmG 3350906 .. 3350933 + -13.4   -4.7871   ATTGTCCTGGACGCT        GCGGGGCGTGGT ATTT ACCACTTCCCGC         TTTTTACTCATGCTT 100 437
CH54_RS21785 3354617 .. 3354627 +  -2.6  -3.96216   ATATGAAACAAATAA                 TAAT GTA ATTA                 TTCTTTCCCTAAAAA  53 153
CH54_RS15195 NONE
CH54_RS15200 3357899 .. 3357928 +  -7.7   -2.6472   ATGTTCTTCCTCTCT       GTATGCAGGGGGC AGTG GCCCCCTGCTCAA        TAATATAAAGTGTTG  61 40
        glsA 3358885 .. 3358905 +  -2.4  -2.53125   TATAACTTATATAAA            GGCCCGCT TTTGT AACGGCCC            ACTTTTGTAACGGAT  39 11
CH54_RS15220 3362679 .. 3362692 +  -3.1  -4.43576   GCGAATCAATCAACT               GTGAT AATT GTCAC                TTTATTATGTGTGCT  62 293
CH54_RS15225 NONE
CH54_RS15230 NONE
CH54_RS15235 3367490 .. 3367505 + -11.8  -5.05079   AGCCAAAAAGAAAAA              CCCCGG CATG CCGGGG               TTTTTGTGTGCTTGT 100 405
        tsaD 3373039 .. 3373058 + -10.7  -2.72661   AAAGTCTGAGCGGGG            CTGCGGC TGCGTT GCCGCAG             TCATTCAAAATACTC  76 45
        folB 3374298 .. 3374313 +  -3.2  -5.06414   AGTGATTGAGCGCGG              TCAGCG GTCT CACTGA               TTTTTATTACACCAC  72 10
        bacA 3375341 .. 3375358 + -11.3  -5.76237   ACGGAATATAAAAAC             GCCCTGA ATTT TCAGGGC              TTTTTTATTTATATC 100 54
CH54_RS15290 3379283 .. 3379297 +  -4.2  -2.79098   TCAGCCAGCGTTTTG               GCTGAA TGG TGCAGC               TAGTTAATAGATAGC  46 4
        glnE 3382164 .. 3382179 +    -6  -2.55818   TAAATGGTTGGTTGC              AGCGCC GACC GGCGCA               TAGATTCCAGTTATT  54 7
        hldE NONE
        yjeH 3385362 .. 3385385 +  -5.2  -5.00895   GGCTTCCAGTTCGCC          CATGCGTTGT TCCA ACAACGCCAG           TTTTTCTCTGGTGCG  82 156
        ribB 3386724 .. 3386762 +  -8.9  -4.50298   AATTTGGTTTACCCA  CCGGGTTGCTATC-ATTC TATC GAATAGATCGCCGCCCGG   TTATTTTTGACTTTC  88 78
        ygiD 3387843 .. 3387865 +  -9.2  -2.79684   AGCGCAAGCGCTGTT           CAACATGGTT TAC AACCAAGTTG           TCATTCACTTGCTGC  68 154
        nudF NONE
CH54_RS15345 3392994 .. 3393008 +    -5  -3.32844   GCGGTGGCAGTTCCA               GTTTGT TAG ACAGAC               TTATAGCCTGACCAA  54 17
        cpdA NONE
        yqiA 3394484 .. 3394499 +  -3.9  -3.57144   TTTTAGGGCTAGCGA              CCGCT TAATAT GGCGG               TTTAAGCATCACCCG  52 18
        parE NONE
CH54_RS15365 3397792 .. 3397804 +  -4.7  -3.10975   CACAACCTTCTTCTG                CCAGC ACC GCCGG                TATTAGCTGCTCGAT  50 356
        parC 3401144 .. 3401187 +   -11  -2.73364   GTAGTAACCAGTAAA TGTAAC-AGGGAGCGCGCGCA ATT TGCGCGCGCTGTCGCGTAACA TAATTAGGGTAAGGA  76 37
CH54_RS15385 3402114 .. 3402127 +  -5.3  -2.74488   ATGAATCCCGATGAG               CTTAC ATAA GTAAG                TGATTCGGGTGATTG  49 93
        ftsP 3403877 .. 3403896 +  -2.8  -4.15044   ATGGATAAATGCGTA            TAATCGCC GCCC GGTGATGA             TTTCTTAACCCGAAC  57 188
CH54_RS15395 3406504 .. 3406525 + -10.1  -2.69649   AAAACGCCATCGCCG           CCTTGAGCC AGCG GGCTCCAGG            ATTCTGTCGCAATAT  69 298
CH54_RS15410 3409440 .. 3409466 + -12.3  -3.61398   GAGGTGATATCGATA         CAAAACGGCGC ACTAA GCGCCGTTTAG         TTGTTCGAGCGGAGA  90 39
        exbB NONE
        exbD 3413497 .. 3413518 + -13.7  -2.71061   AAATAGTCAATAACA           GGCGCGGTG ATAT TACCGCGCC            TGATCTCAGTTTTTA  91 35
        alkB 3426353 .. 3426380 +  -4.8  -3.58343   AATGGGCAGCAAACC        GGCCATAATGGT CGCA ACCGTCATCGCC         TTTGGCCGTACTCGC  55 255
         fes NONE
CH54_RS15545 3437622 .. 3437655 +  -2.5  -3.06696   GCTAAAGGAATTATC     GGA-TTATCGCGGC TCCACCT GCTGCAATAAATCC     TGTGTTGCCAAAAAA  43 53
CH54_RS15550 3444960 .. 3444977 + -12.7  -3.32844   GAACCAATCGCCAAA             GGGTGCG GGCG CGCACCC              TTGTGGAATCCCGCG  87 111
        fepD NONE
        fepG NONE
CH54_RS15570 3450358 .. 3450370 +  -3.3  -3.27525   GATATCTTTGCGGTG                CCCCA TGC TGGTG                TTGCCTTTCACCGCA  48 384
CH54_RS15580 NONE
CH54_RS15585 NONE
CH54_RS15590 NONE
        dhbA 3455946 .. 3455957 +  -5.8  -3.94482   CTTGATAGGTATTGT                CTGC TTGA GCAG                 TTATGTTTCATTTCT  63 36
CH54_RS15600 NONE
CH54_RS15605 3458732 .. 3458771 +  -5.8  -5.19328   TAATAGTATGGATAA  TCCATCGGGTTGTGC-GGG ATA CTTAGCATAATCTGGTGGA  TTTTTATTGTCAGAT  85 79
CH54_RS15610 3459977 .. 3460016 + -21.7  -4.93296   TAAGTATATAAAAAA  TGGCCAGGGTGTCGAGCA ATGAG TG-TCGACACCCTGGCCA  TTTTTATAATGATAA 100 137
CH54_RS15650 NONE
        fliE NONE
        fliF NONE
CH54_RS15665 NONE
        fliH NONE
        fliI NONE
        fliJ 3473370 .. 3473387 +  -9.9  -5.61913   TTATCCGCAATTTGA             GCACTCA TTTT TGAGTGC              TTTTTTATGTTTATT 100 43
CH54_RS15700 NONE
        flgC NONE
        flgD 3476726 .. 3476740 +  -3.5  -3.06515   CAAAATCAAACAGTT               TGGTG CTTAA CGCCA               CTTTTCCCAATAACC  45 16
        flgE 3477972 .. 3477987 +    -4  -2.78463   GACAGCATGATGAAT              GCA-CTG TTC CAGGTGC              TGTAATGGACAAACT  46 5
        flgF NONE
        flgG NONE
        flgH NONE
CH54_RS15735 NONE
CH54_RS15740 3481705 .. 3481732 + -11.3  -2.69381   TAGCGCGGCTGATTA        CCCCCTG-GGTC ATTGG GGCCACAGGGGG        CTGTTATTCATATTT  79 38
        flgK NONE
CH54_RS15750 NONE
CH54_RS15755 3485155 .. 3485169 +  -4.4  -5.27938   GCCATTGTCAAAAAC               TTATTT GTA AAATAA               TTTTTATTTAACAAT  80 11
CH54_RS15770 3488543 .. 3488562 +  -6.4  -5.40072   TTTGTTACTCGAAAA            TACCGCTG ATTA TGGCGGTA             TTTTTTTGGCCGCAA  91 46
        fliD NONE
        fliS NONE
CH54_RS15785 NONE
CH54_RS15790 NONE
CH54_RS15795 NONE
CH54_RS15800 NONE
        motA NONE
        lafU 3494694 .. 3494734 +  -3.4  -5.55698   TTATGTTCTTTTTTT CACCGTCCAG-CTTA CCCTCGAGCTTT TAGGGCTGGGCGGTG  TTTTTTTACATTATG  83 41
        hybO NONE
        hybA NONE
        hybB NONE
        hybC NONE
CH54_RS15840 NONE
        hybE NONE
        hypA 3502376 .. 3502387 +  -2.2  -2.99947   TGGAATAATCCTGAA                GGAG TGAA TTCC                 TATGTGTACGACTTG  42 33
        hypB NONE
        hybG NONE
        hypD 3504935 .. 3504949 +  -2.1  -3.70622   CTGCCTACCTGCAAC               TCCAA TGACT TTGGG               TATTGTTTTCAATGG  49 130
        hypE 3506012 .. 3506030 +  -3.1  -3.05463   ATTTGTCCTTGAAGC             CGCAG GGGTGTTAG CTGCG             TTCGCTCACCCGAAT  45 45
        hypF 3508803 .. 3508818 +  -6.8  -2.57344   GGCAGGCCGTGATTG              CAGCCG CGCG CGGTTG               ATTATCGGCGGACTG  56 9
CH54_RS15880 3509839 .. 3509881 + -11.5  -4.82518   CTCAGTAAAACTGCT GCGGCTCAGCCTCT--ATGAG TCA TTCATCCAGAGACTGAGCCGC TTTTCTTGATGTTTT  95 33
CH54_RS15890 NONE
CH54_RS15895 3517338 .. 3517389 +  -6.8  -2.86432   GATCCGCAGCATTAA TCA-TTAGCTC-AGTCTGCCACCC TGAAAT GGGTGGTAGAATCGGGCTAAGTGG TCGCTTTTTGCGTTA  57 26
CH54_RS21660 3517685 .. 3517703 +   -16  -3.80625   CAAATCTGTCTTTGA             CCCTCCCC CAA GGGGAGGG             TTTAGATTATGGCCC 100 93
        cueP 3518811 .. 3518837 +  -6.6  -5.03227   TCAATAGAATATATA         CACCTAAATAAC ATG GATATTTTGGTG         TTTTATTTCTAATGT  85 512
CH54_RS15905 3532258 .. 3532283 + -14.1  -5.37345   GTTATCAATAACTAA         CGGCACATATC AATG GGTATGTGCCG          TTTTTTGTGGTTAAA 100 53
CH54_RS15910 NONE
        pepT 3535554 .. 3535579 + -14.1  -3.08581   TAAACAGCCCATAGG         GGAGGG-GCGAT ATG ATCGCGCCCTCC         ATTTTACGGCTTAGT  95 49
CH54_RS22140 3542213 .. 3542226 +  -5.3  -3.66844   ACACCTGAAATATGG               CTATC TTTG GATAG                TTATTACAATGTCGG  58 155
CH54_RS22145 3542772 .. 3542792 +  -4.1  -3.90744   GTGGTGGAATATAAA            TATATTAAC GTC GTTTATATA            TTCTTTAAAAAACCA  57 369
CH54_RS15945 3544450 .. 3544465 + -11.8  -4.79373   TCATTTTCCTTTCAA              GCCCGC ATTC GCGGGC               TTTTATCTTCTGTTA 100 44
CH54_RS15950 NONE
CH54_RS15955 NONE
CH54_RS15960 NONE
CH54_RS15965 3548273 .. 3548307 + -10.8  -2.71144   GAGCGGCGATTTTTC     CCTTATTCGTGGCCAG TTG TTTACCACGAATAAGG     TGATTGCCACGAATC  76 47
CH54_RS15980 3551218 .. 3551233 +  -4.8  -3.34455   CCATTCGTAGCCGCT              GTTTAT AGTC ATAAAC               TTAAATTTCTGATGG  54 31
CH54_RS15985 NONE
        mdtN NONE
CH54_RS15995 NONE
CH54_RS16000 3556127 .. 3556176 + -12.3  -4.82667   ATGGTGCCAATAAAC AGGGGAGAGAATAGCGCT-ATGCT AAT AGCATTAGGGTGATTCTCTCCCCA TTTTTACTCTACTGC 100 68
        tssB 3558889 .. 3558906 +  -2.7  -2.75481   TGGCCCCAAAAGACT             GTTAATC GCTG GATTGGC              TGCTTGCCATTAGAA  42 21
        tssC 3560499 .. 3560514 +    -4  -2.60079   GCATAAACGGAGACA              CGATGA AAAT TTATCG               TCCGTTATGGAATGA  45 35
        tssK NONE
        tssL NONE
CH54_RS16030 3564227 .. 3564244 +  -4.1   -3.3782   GATGAAGGAAAACCG             GTCGC AGGAACAA GCGAC              TTCATTCAGTAAGTA  50 73
CH54_RS16035 3564899 .. 3564918 + -11.4  -5.36364   AGGGTAACCCCGCAA            GTAGGCGG TTCG CCGCCTGC             TTTTTGTGTTTTTAG 100 159
        tssH NONE
        vgrG NONE
CH54_RS16050 NONE
CH54_RS16055 3573345 .. 3573357 +  -3.4  -3.73224   GTTCATGTCATCTTT                TGCT TTTAC AGCA                TTTAATGAAAGATAA  52 142
CH54_RS16060 NONE
CH54_RS16065 NONE
CH54_RS16070 3575512 .. 3575526 +  -2.8  -3.87952   CGAATTGTGACTAAA               TCATTC CCT GATTGA               TTACTTTTGTTATTA  53 11
CH54_RS21665 3576310 .. 3576329 +  -4.4  -3.09289   TAAAAATTTATTTTT            CTTTATTT TTAT AAGTAAAG             TGTATTCAAGTGATG  49 73
CH54_RS16080 3577190 .. 3577201 +    -3  -3.80114   GTTTAATGATCGGGT                TATG TATT CATA                 TTTGATGCGTTCATA  53 101
CH54_RS16090 3578124 .. 3578137 +  -2.5  -3.73783   GAATCCATAATGAAA               TATTT AAAA AAATA                TTATTAAATTAAGTA  50 5
CH54_RS20315 3578968 .. 3578978 +    -4  -3.90002   TTTAGCTGAAGGGAT                 TTTC GAT GAAA                 TATTTTAGTTTGATG  57 7
CH54_RS16100 3580175 .. 3580194 +  -2.2  -3.09289   AAAATTATTATTTTT            CTTTGTTT TTAT AAGTAAAG             TGTATTCAAGTGATG  42 370
CH54_RS16105 NONE
CH54_RS16110 NONE
CH54_RS16115 NONE
        tssA 3587275 .. 3587292 +  -5.5  -2.91682   ATCGATCCTGCCCGG             GCCATGG TGCT CTGTGGC              TGACTTTATTTTTTT  52 5
        tssF NONE
        tssG NONE
        tssJ NONE
        vgrG NONE
CH54_RS16145 NONE
CH54_RS16150 3594771 .. 3594787 +  -8.1  -3.23216   TGTTTTCTCCATTTA              TGAAAAC AAG GTTTTCA              TTAATAATGATAGCG  65 263
CH54_RS16160 NONE
CH54_RS16165 NONE
CH54_RS16170 3599004 .. 3599014 +  -5.4  -3.42459   GGGGTATTTATTTGT                 GATC CTA GATC                 TTACTATTGTAAATA  56 339
        tssE NONE
CH54_RS16185 3601610 .. 3601633 +  -5.3   -4.6038   AGTCTATGGAGCATT          GGCCCTA TCTGTGATCT TAGGGCC           TTTTCCTTTAATATA  71 227
CH54_RS16190 3602459 .. 3602477 +  -3.9   -5.4111   CGTTGATGGAATATA            TGGCGCAT CGGC AT-CGCCA             TTTTTTCTGCTTCTT  83 296
CH54_RS16220 3608132 .. 3608157 +  -7.6  -2.93251   CTCCGCTATAAGCAA         TAGTGGAGTC ACCAAC GACTCCACGA          CTTATTGATTATTGA  61 23
CH54_RS22155 NONE
CH54_RS16240 NONE
CH54_RS16245 3614687 .. 3614700 +  -6.7  -4.05678   GAGGGCGGGGTAGAC               CCCTA ATGC TAGGG                TATTTTCTTTGCCGA  71 288
        tssB 3621325 .. 3621335 +  -4.6  -2.82623   CAAAGACTGTTAATC                 GCCG GAT TGGC                 TGCTTGTAGAAAGAA  48 28
        tssC 3622924 .. 3622939 +    -4  -2.59431   GCATAAACGGAGACA              CGATGA AAAT TTATCG               TCCGTTATGGAACGA  45 35
        tssK NONE
        tssL NONE
CH54_RS16325 NONE
CH54_RS16330 3627146 .. 3627165 + -13.6  -5.95286   GCGTAATGATCCGAA            GCAGACGG TTCG CCGTCTGC             TTTTTTGTTTTTGCT 100 35
        tssH 3630010 .. 3630023 +  -4.5  -4.27512   TAAAAGATAGGGGAC               GTAGC CAGC GCTGC                TTGTTTATTGTCCAG  63 78
CH54_RS16340 NONE
CH54_RS16345 NONE
        vgrG NONE
CH54_RS16355 3634435 .. 3634445 +  -2.4   -5.5604   TTAATCCAATTGTTG                 CTGC CAA GCTG                 TTTTTTATTAGTTGG  80 205
CH54_RS16365 NONE
CH54_RS22160 3637445 .. 3637455 +  -6.8  -2.92439   TGGATGATGTAATTT                 CCCA CAA TGGG                 TAGTTTGAAAGTGTT  59 232
CH54_RS16375 NONE
CH54_RS20320 3640461 .. 3640471 +    -4  -4.06533   AAAAGTAGTTATTTT                 CTTA TCT TAAG                 TTGTTTCCTGGTTTA  59 39
CH54_RS16385 NONE
CH54_RS16390 NONE
CH54_RS16395 NONE
        tssA NONE
        tssF NONE
        tssG 3649845 .. 3649860 +  -2.6  -2.53894   TGGCGATTACCGCTG              GTAAAA CACG TTTTGC               ATTACTGATGCTGGT  41 22
        tssJ 3650344 .. 3650362 +  -2.4  -2.62184   TCATGGGATGATTCT             TTTACCCT TGA AGGATAAG             TAATATGCCCCAGCC  40 4
        tssE 3650834 .. 3650845 +  -2.2   -4.7908   GGGTTCTGGACTCTG                GAGT ACCC GCTC                 TTTATTTCTGTTTTT  64 52
CH54_RS21675 NONE
CH54_RS16430 NONE
CH54_RS16435 3653867 .. 3653877 +  -5.4  -3.22777   AAATATATCTTACAG                 GACT ACA AGTC                 TGTTGATATGTAAAA  54 332
CH54_RS16440 3654625 .. 3654660 + -14.1   -2.7186   TTGAGATCCGGCTAT    TCCCATGTGCCGATC TGGTTT GATCGGGGCATGGGA     TGATTACCACGATTT  93 50
CH54_RS16445 3656555 .. 3656569 +  -8.6  -3.02043   TTTAAGTTATCTATT               GCTGAT ATC ATCAGC               TGTTGGCAGCGCATT  67 258
CH54_RS16450 3658237 .. 3658265 +  -5.1  -3.54408   CACCCCAACGATAAT        CCTCGGCCACCAG TGC CGGGTAGTCCAGG        TTAGTTTCGGTCACA  56 460
CH54_RS21790 3661017 .. 3661039 + -12.8  -2.98545   GAATCGAACCAAGGA           CACGGGGATT TTC AATCCCTGTG           TAATTGTTATACCAA  84 511
CH54_RS16470 NONE
     dnaB-PI 3663711 .. 3663729 +  -3.1  -3.85698   TTTGGCAGAAAATGA             TGTCAGA GGTGA TCTGTCA             TTTATAGAGAAAGCA  54 425
CH54_RS16495 3666688 .. 3666704 + -10.9  -2.62616   TCGAACCAAGGACAC              GGGGATT TTC AATCCCC              TGCTCTACCGACTGA  72 281
        speF 3669571 .. 3669592 +  -9.5  -2.70532   CTGAGGACAGATAGA           CAGCCAATG GGAA TATTGGCTG            TCACTTTATCCCACT  70 42
        trmB NONE
CH54_RS16535 3674535 .. 3674552 + -12.7  -4.96501   TAGATAATCAATAAG             GGCGCCT AAGC AGGCGCC              TTTGTTTTTATCAGG 100 57
        glsB 3675534 .. 3675546 +  -6.2  -2.92111   AGAGCTACTGGCACA                GCGG ATTGG CCGC                TCCATTTTTTAGGAC  55 1
CH54_RS16545 3676670 .. 3676701 + -13.9  -4.94222   GTGATTCTGGTTTGG      CAGGTTCAGACTGG GAATG CC-GTCTGAACCTG      TTTTTCTCACTTATT 100 294
CH54_RS16580 3682833 .. 3682843 +  -6.8  -2.54655   GTATTATACAGTGGG                 CCAG GTG CTGG                 TAGCTTCCAAATTTT  52 464
CH54_RS16625 NONE
CH54_RS16630 NONE
CH54_RS16635 NONE
CH54_RS16640 3691655 .. 3691673 +  -2.2  -4.66833   GAATTAGTGGGGATC             CCTCAGCG CTT CGGCGGGG             TTTTTGCGATTGAGA  64 45
        speA 3695996 .. 3696015 + -12.2  -5.27335   ATTAATATCACTTAA            GGGCAAAC TCAG GTTTGCCC             TTTTTGTTTGCGCGA 100 54
CH54_RS16660 3696424 .. 3696443 +  -8.5  -3.75153   TGGAATAAGTCATAA            CGCCCCT ATTGTG GGGGGCG             TTTGCATTGACAAGA  73 33
         tkt 3699814 .. 3699829 + -10.4  -5.75945   ATGCAGCTGTTAAAA              GACCGC TTCG GCGGTC               TTTTTTTTCGCCAAT 100 109
         epd 3701092 .. 3701103 +  -2.2   -4.4521   CGGTTTCTAGTATGG                CATG TTAA CGTG                 TTGTTTTTCCGTGAT  59 31
         pgk 3702362 .. 3702381 + -10.6   -3.9373   CAGTAATTTAGATAA            CGGGGGGC GAGA GCCGCCCG             TTTCGCTTTTAGCTA  86 35
        fbaA 3703668 .. 3703691 + -12.6  -5.01732   TGGCGGATATAAGAA          GGACTCATAA TTTT TTATGAGTCC           TTTTTTACGGCACTT 100 117
        mscS 3705755 .. 3705772 +  -7.7  -5.17507   TAAACTCAGTCAAAA             CGGGCTA TTAT TAGTCCG              TTTTTCTTCCGTTTT  88 54
        argO 3706618 .. 3706632 +  -2.8  -2.90341   TTTCAGTTAGCGCGG               CAGG GATTAAG CCTG               TGAATTTTTATCATT  42 8
CH54_RS16705 3707495 .. 3707523 +  -9.7  -3.35526   ATCTTGCCGTAATAC       CTGATGCCC-GT GAGATA ACAGGGCATCAG        TTACCTTTCTCATTG  75 45
        rpiA 3709269 .. 3709297 +  -8.9  -2.62316   TTGAATGAATATTAT        TTAGGGTGAGGTT TTT GGCTTCACCCTGA        TAAATTGTGCCTTTA  67 41
        serA 3710833 .. 3710857 +  -8.6  -5.80817   ACTGATATGACTAAA          CACCCGCTAT GTATA ATATCGGGTG          TTTTTTTATGTTGAA 100 51
CH54_RS16735 NONE
        pepP NONE
        ubiH NONE
        ubiI 3716795 .. 3716836 +  -5.2  -4.04174   AGTTTTTCTCACACG CAACCAAAACCTGATAAG TTGATT CTGACAGGGTTTTGGTTG  TTTCGTTATATAACA  63 107
        gcvT 3718339 .. 3718357 +  -7.4  -2.83903   TATTCCGCATTCTAC             GAGCCACA CTT TTTGGCTC             TACCTTTTTAAGGAG  60 51
        gcvH 3718851 .. 3718878 +    -4  -2.99251   TTACGCCACTACGAC        CCGAACGACGTG CTTC CCCTTAGTTCGG         CTTTGTGAGTATTTC  47 112
        gcvP 3721865 .. 3721882 + -10.5  -5.28831   GTTGTAAATGAAAAA             GGGTCGC GCAA GCGGCCC              TTTTGTTTTATTGGT 100 46
CH54_RS16770 3722770 .. 3722791 +  -4.4  -3.59087   TGTGCTACCTGCAAC           TGTGGCAG CAAATA CTGCCAAA            TTTCAGGATAGTATT  52 75
CH54_RS16780 3724285 .. 3724311 + -12.3  -2.50096   TTAATCGTTGATTTT         TAGGAGGCTGG AGAAG CCAGCCTCCCA         GTATTAAATATTATT  83 37
        sdhE NONE
CH54_RS16795 3726240 .. 3726260 +  -3.2  -3.28416   GTTTGGCTCGGATGA            GGGCATTA ATTAG TGAAGCCC            TTAATCTGGCTGGTG  48 13
        creB 3726956 .. 3726973 +  -4.1  -2.77283   TCGAATATGAGCCAT             CACCCAT GAAA ATAGGTG              TGCGTTTGTTGCTGG  46 31
        creC NONE
        creD 3729933 .. 3729951 + -11.7  -3.89822   CGCAGGGATAGCAAG             CGGGCAC AATAA GTGCCCG             TTTGTCACATCCGTG  91 56
        xerD NONE
        dsbC NONE
        recJ 3734080 .. 3734093 +  -6.7  -2.73364   ATGACCCCCGATGAG               CTGAC ATTA GTCAG                TGATTCGGGTGAGAG  56 100
        prfB NONE
        lysS 3736923 .. 3736938 + -11.8  -4.72272   CAGTAAATCTTATTA              GGGCGC TATG GCGCCC               TTTTTACTGAGCAAA 100 55
CH54_RS16845 3737459 .. 3737476 +  -4.9  -3.64703   ATGCCACTAACGTGG             TGCTAAT ATTT GTTAGCA              TTTGCGTAGGCAAAC  58 345
CH54_RS16855 3739898 .. 3739908 +  -5.4     -2.55   GTAATGGCTGAAAGA                 GTGA TAC TCAC                 TCGGTTAGAGTGTTC  50 174
CH54_RS16865 3741361 .. 3741371 +  -5.4  -3.60296   CTCGTTATGTATAAA                 TGGT TCA ACCA                 TTTACCCTGCCCATC  56 168
CH54_RS16885 NONE
CH54_RS16890 3744588 .. 3744600 +  -4.9  -2.96031   TAGTTTTTTACATAT                CATTT AGA AAATG                CTTCTTTGCAATCAG  51 208
CH54_RS16895 NONE
CH54_RS16900 3746391 .. 3746404 +  -5.3  -2.66979   AATAGGGGTTAGATA               GTATG AAGC CATAC                ATTATGAATTATAGT  49 47
CH54_RS16905 3747094 .. 3747128 + -10.2  -5.26155   GAACACATATGAATA     CTGACTGAACAGTT ATTAGTA AACTATTCAGTCAG     TTTTTATCTTTGTAT 100 304
CH54_RS16915 NONE
CH54_RS21935 3750341 .. 3750392 +  -3.7  -4.18161   TCACCTCACTTTCAA CAAACGCGATGGCCCGCCCGCCTAT TTTT ATCGGT-GGCGGGA-AGCGCTTTTG TTTTAAGAGTTTATA  60 104
CH54_RS16940 3753583 .. 3753598 +  -5.4  -3.72588   ATTAAGCAGATAACA              GGTATC GGCA GATGCC               TTTCAATGTGACTTA  60 448
CH54_RS16950 3754907 .. 3754918 +  -5.8  -3.59087   ATGCATGACCTTGCT                GCCA GCGG TGGC                 TTTCACCATCATCTT  59 302
CH54_RS16965 3759975 .. 3759985 +  -2.4   -3.0623   ATCACCCACAAGTAA                 GCAG TTA CCGC                 TATAGTTTACTGTTA  42 83
        cbpA NONE
        cbpM 3761748 .. 3761768 +  -2.5  -5.30348   TTTAATCGGCACTAA            CTGGCGAAT TTG ATCTGTCAG            TTTTTCTTCTTCACT  76 394
CH54_RS16985 NONE
CH54_RS16990 3763785 .. 3763823 +  -3.3  -4.23298   GTAATAAGTTGAGTT  TCTCA-ATTCCCCTTGAG CGTA TTCAAGGGGAATATCAAA   TATTTTTTCAATTTA  59 37
CH54_RS16995 3764879 .. 3764891 +  -2.7  -3.81853   GGTTTGTTGGTTATT                GATAA TAG TTGTC                TATTTTAATATTAAA  53 24
CH54_RS17000 NONE
        gspD NONE
        gspE NONE
CH54_RS17015 NONE
        gspG NONE
CH54_RS17025 NONE
        gspJ NONE
CH54_RS17035 NONE
        gspL 3773736 .. 3773751 +  -2.6  -4.06179   ATGGAACTAACGATA              TAACAT TTGA ATGTTG               TTTATGAATTTTAAA  55 3
CH54_RS17045 NONE
CH54_RS17050 3775366 .. 3775379 +  -2.4  -2.93901   TTATGTGATTCACAT               CCAA AAATAG TTGG                TATGATTAATAAAAT  42 322
CH54_RS17060 NONE
CH54_RS17065 3776792 .. 3776807 +  -4.8  -4.46072   TTACTGACTCGTAAT              GATATA TAAA TATATC               TTTCTGTTTATTGAG  68 17
CH54_RS22175 3777877 .. 3777892 +    -4  -2.66106   TGGAATCCATAATAA              CTGAAG TATC TTTCAG               TAAATTATTAAAGTA  44 483
CH54_RS17085 3780357 .. 3780371 +  -2.7  -4.75954   TTATTGCTGCATTAT               TCGGC AATTG GCCGC               TTTCTTTTGCCTTTT  65 289
CH54_RS17090 3781667 .. 3781706 +  -2.8  -3.55946   CGCTTAATACTGTTG  GGCAATCACC-GCGGCCAG ACG TTGTTGGAAGGTGATTGCC  TGTTGTTTCAGATGC  48 46
        lysA 3784372 .. 3784398 +  -6.4  -3.14211   CGCGGTGAAGTGTTT         GCCGCGGCCAAG TAG CTCGGTCATGGC         TTGCTCACCGCCGAT  57 371
CH54_RS17110 3787864 .. 3787881 + -11.3  -6.32017   TTTTATTTGCACCGA             CCTACGC AGAT GCGTAGG              TTTTTTTTATTTGTT 100 228
         aas NONE
        lplT 3791485 .. 3791500 + -11.8   -4.1466   TGTCAGCAATCTGAA              GGCCGC CTAA GCGGCC               TTTTGGCGATTGAAT  95 152
        rppH NONE
        ptsP 3797957 .. 3797969 +  -6.3  -3.72576   CATCGACCGGGTTTA                CAGAA CTT TTCTG                TTTGGTGCAGCCCAG  64 79
         lgt NONE
        thyA 3799765 .. 3799793 + -16.8  -2.56177   TAACTATCTCGCCTG        CTGACCGGAGCT ATTAC GGCTCCGGTCAG        GTTGATGTCAAATCT 100 38
CH54_RS17165 NONE
CH54_RS17170 NONE
CH54_RS17175 3801633 .. 3801644 +  -2.2  -3.04517   AGTATACCAGAGAGG                GAGG GAAT TCTC                 ATTTTCAACAGGGGT  42 62
CH54_RS17180 3802069 .. 3802081 +  -2.6  -2.64134   AACTTCAGGATTTAT                CCGC AAGTG GTGG                TCAGTTGGTTTAATC  41 109
        recC NONE
        ptrA NONE
        recB NONE
        recD 3814074 .. 3814085 +  -4.4  -2.60615   CCTTCAGATTACAAA                TCTG CCAG CAGA                 ATCTTTGAGCGGCGT  47 63
        amiC 3816997 .. 3817018 + -13.1  -3.15663   ATGCTGCCCGCAGGG           TGTGCCTCA GGGG TGAGGCACA            TTCATCCCGATGAGT  91 145
        mltA 3818988 .. 3819003 + -11.8  -4.73094   TCAACCCTTTCTCTG              GCGGCC AATT GGCCGC               TTTTGTATTCGTATT 100 62
        tcdA 3819907 .. 3819951 +  -9.9  -3.54158   TAGCTGCAATCGCCT GCACACCTTGCGCCAGTGCTT GTA AACCGCTGGCGCGAGAGGTAC TTAATTGTTGCCGTA  74 49
CH54_RS17250 3822214 .. 3822226 +  -7.7  -3.02471   AAGTGAAAAAAAACA                GTAGC TTA GCTAC                TATGTCTGGTACACC  63 273
CH54_RS17255 3823359 .. 3823375 +  -5.1  -3.22061   AACAGGAAAAGCTCC              GTTTTCG CTA CGACAAC              TAATTTTAATTATTA  53 6
CH54_RS17260 NONE
        rlmM 3824950 .. 3824965 + -11.8  -4.98911   CTGTCTTACGCACAA              GGGGCC AATT GGCCCC               TTTGTTTTTATGCTG 100 60
         syd 3829045 .. 3829056 +  -4.4  -3.84279   TCTCGCACACGGGCT                GTGA GACA TCAC                 TTCTATTCATTTTAT  59 83
CH54_RS17290 NONE
        truC NONE
CH54_RS17300 3831479 .. 3831504 +  -3.3  -4.35926   ATTGGTCACTACACT         CTCTAAATGAC GCAA GTCATCTAGAA          TTTTACGTTTCAAAT  63 261
        rpsB 3837628 .. 3837648 +   -14  -3.74792   GAAATATGTTGGTTA            GGGGGCCT TTTAT AGGCCCCC            TTTGCGTATCTAATG  95 80
         tsf 3838569 .. 3838592 + -12.4  -4.40358   TCTTAATGCTAAAAA          TGGGGCCGCC ACCA GGCGGTTCCA           TTTTATCCACTCGAT 100 35
        pyrH 3839608 .. 3839621 +  -4.5  -4.21811   GGGGCTGCTCCTACG               CCAGC AACT GTTGG                TTTGTATATTCACTG  63 61
         frr 3840263 .. 3840288 + -11.2  -4.11484   CCTCACTCGCAATGA         CAAAGCGCCG CTTAGT TGGCGCTTTG          TTTTAGCGGGTTCAA  90 42
        ispC 3841818 .. 3841837 +  -8.6  -5.63504   GCTGTCACTGAAGAA            GCCGTG-AC TTG GTACACGGC            TTTTTTTGTGCGCTT 100 162
        ispU NONE
        cdsA NONE
        rseP 3844894 .. 3844917 +  -2.3  -2.52464   CACTTTTCAATGATT          TCTCCCGTC TTTAAC GGCAGGGGA           TAGGTTAGGAAGAAC  39 12
        bamA 3847401 .. 3847438 +  -6.3  -3.44517   TGGTAGTTGAAATAA   CCTAAAGTAGCGTTGGC TCAG GTTGGCGCTATCTTAGG    TATTATTCAGTATTA  62 95
         skp NONE
        lpxD 3849113 .. 3849152 +  -7.2  -3.44552   AGAGTTCCTAATTTG CGGCCTGCCTAATGCCTC CCTTTT GGGGCAGT--GCAGGCCG  TGTTGTTGATAGCAT  66 109
        fabZ NONE
        lpxA NONE
        lpxB NONE
        rnhB 3852304 .. 3852318 +    -5  -2.96899   TAAAATAAAGCAACA               TCCATA ATG TATGGG               TATGATTCCTTGGCA  51 58
        dnaE NONE
        accA 3856867 .. 3856889 +   -12   -5.5762   AATGATATTTGAAAA           TCCGGTGCTG AGT TAGCGCCGGA           TTTTTTATATTTAAT 100 55
CH54_RS17420 NONE
        tilS NONE
CH54_RS17430 3860594 .. 3860615 + -15.9  -2.72344   GTCCTGAATGCAAAA           CGGGCCACT TTTC AGTGGCCCG            TCGTTAAAGGTGCAG 100 48
CH54_RS17445 NONE
        arfB 3862297 .. 3862319 +    -4  -3.40323   TTGATGCTGATATCA           GCCCCAATAG TGA CTGATGCGGC           TTCATCCTTTTATAT  50 37
        nlpE 3863035 .. 3863050 +  -4.7  -4.26903   ATAAGAGCTGCGACA              GTCAG TAGAAT CTGAC               TTTTGCTGCAATAAA  63 18
        gmhB 3869659 .. 3869672 +  -2.4  -4.08887   TGCGTCACAAATAGT               CGTT TCGTTT AACG                TTTCGTTTAAATAGT  53 27
CH54_RS17495 3871709 .. 3871732 +  -5.2  -3.81929   TAACGAGCAAATAAG          GCCGGGCTGA GAAA TTAGTCGGGC           TTTAGTACCTTGTTG  61 90
CH54_RS17500 3871872 .. 3871887 +  -2.4  -3.49475   TTTATAACAATAAAC              GTCGCG TGAC TGCGCC               TTGTCTGAGAATGAG  47 74
CH54_RS17505 3872018 .. 3872064 +  -8.3  -3.45839   TCCACCATATAAAAC TATTTCAAAACGTACTGCGGTC GCAA GACT-CAGTGTGTTGTGAAATA TTGCTCTTTAACAAT  72 34
CH54_RS17510 3875128 .. 3875138 +  -6.8  -4.39386   GGCTTAACCTTACAA                 CACC GAA GGTG                 TTTTGGTGATTTGAG  76 30
         rrf 3875424 .. 3875444 + -13.3  -5.76633   AAGAAAAAGAGAAAA            GCCTTCTGC TGC GCAGAGGGC            TTTTTTTATGTATCC 100 95
CH54_RS17545 3883179 .. 3883203 + -13.6  -5.84381   GTTGATAACCTTAAA          GGGCGCTGAT GATAA GTCAGCGCCC          TTTTTTTATTAGTCA 100 184
CH54_RS17590 NONE
        mtnC NONE
CH54_RS17600 3893624 .. 3893678 +  -2.6   -3.5764   GAATTAATCCCCTTA GTCCTTAAAGCCGCAGGGGCGTTAGC TGC GCTCGCCTACCTGCGACTCCAATGAC TTTGGGGATAAAATT  48 34
        mtnK 3896183 .. 3896212 + -18.1  -3.06261   ATCATTGTCACAAAA       TAAAGCCCTGCAT AATA ATGCAGGGCTTTA        TGTTAAGAGTTAGAC 100 70
        lpcA 3899585 .. 3899609 +   -13  -3.36878   AGCCTGATTTTCTGG          GGTGATCAAC GGTCA GTTGATCACC          TTGTGGCTGAGTGAA  93 34
CH54_RS17625 3900648 .. 3900665 +  -7.1  -4.72272   AGTCATGCGGAAAGG             GTAGATA TTGA TATCTAC              TTTTTCCTGACCAAA  83 224
CH54_RS17635 NONE
CH54_RS17640 NONE
CH54_RS17645 NONE
CH54_RS17650 NONE
        nqrE NONE
        nqrF 3907512 .. 3907522 +  -3.2  -3.53811   TTATGCTCGACGACT                 TCGG TGG CTGA                 TTTGCCGCCACTCGG  50 15
CH54_RS17665 NONE
        nqrM 3908873 .. 3908901 + -11.8  -5.58522   TTCTGTATATAAAAA        TCCCCGTTCAAT ATGGA GTTGAGCGGGGA        TTTTTGTTTTATATA 100 59
        ddlA 3911477 .. 3911491 + -11.4  -5.54885   TTCTCTGAAAAAAGA               GCTGCC TCG GGCAGC               TTTTTTATTGCTGTT 100 56
CH54_RS17685 NONE
CH54_RS17690 NONE
CH54_RS17695 3913611 .. 3913626 +  -6.2  -3.08032   ATTTCTCCGATTTAA              CTGTAT TCTT ATACAG               TGGTTTTGGCGGGGG  56 90
        dinB 3914895 .. 3914916 +  -5.1  -5.08824   TTGGCCCAATCGACA           CCATATCCA TCTC TGGGTAAGG            TTTTTTAAATAAACC  82 214
         gpt 3931809 .. 3931828 + -11.4  -4.19735   TTAGTGTAATTTAAA            TGCCCGGT GCCT ACCGGGCG             TTTCATTTTCCGCGC  93 42
        frsA NONE
         crl NONE
        proB NONE
        proA 3936178 .. 3936212 + -13.1  -4.91109   TATATTTAATCACTT    TAAAGCGACATTTGGC ACCT GCCG-ATGTCGCTTTA     TTTTTATCCTGCCAC 100 50
CH54_RS17805 NONE
CH54_RS17810 3938728 .. 3938744 +  -4.3  -4.09685   TGCCCTGACACATTT              GTTGTCC GAG GGGCACC              TTTTCGAGCATGGGC  61 113
CH54_RS17815 3940094 .. 3940127 +  -4.7  -3.72621   TCAATATAACACTGA     GTGCATTAATCTA CCAATCTA TGGGTTAGTGCAC      TTACTTTATATTTAA  56 63
CH54_RS17825 3942643 .. 3942657 +  -4.3  -2.55624   ATTAAGGAGTTTTTA               GATGA AAAAA TCATC               CATTTTGATTGCTGG  47 36
CH54_RS17830 3944021 .. 3944046 +  -2.5  -4.40804   GGTGTGCCAAATCCG         CGTGAGACC AACACCAG GGATTCACG          TTTTATAAAATACTC  60 80
CH54_RS17835 3945301 .. 3945333 +  -6.1  -3.67989   CAATATCACGCGGCT      CGCACCGCTCAGGCG GCT CACCTGAGCAATTCG      TTTGGATAGGCTTTT  64 411
CH54_RS17840 3954147 .. 3954163 +  -3.6  -2.70932   GCGGTTATTCACTGA              GTCGAG ATAGA CACGAC              TGATTCAGCCAACGA  43 40
CH54_RS17845 3954685 .. 3954697 +  -4.7  -4.89521   CCTGTGGGTTATCTG                CCGCG ACA CGCAG                TTTTATTTCAAATAT  77 172
CH54_RS17855 3956028 .. 3956039 +  -3.6  -4.98911   ATCGACGCCCACCTT                GGGG TATT CCTC                 TTTATTTTTCTCGTG  70 72
CH54_RS17860 3956522 .. 3956565 + -14.8  -2.96745   TATTGGTATTGATTA TAAGCCCGATATGACAATGG TAAT TCATTGTTTTATCGGGCTTG ATTGTTTCAGCTCTG 100 83
CH54_RS17865 3957258 .. 3957286 +  -8.1  -2.83867   GTCTATATTTGCCAG        CCCCGTTAAAGGC GTA GTCTTTACCGGGC        ATTATTACTCAATCC  62 17
        aroL 3959202 .. 3959214 +  -6.2  -3.70478   GTGAAGTTGTCAGAC                GGCC CAATA GGCC                TTTAACTAAATTTGT  64 8
        ppnP 3960055 .. 3960081 + -11.6  -4.08682   GTTTACTCATCGACC         TTGCCCTCTCAA ATA TGGAGAGGGCGA         TATTTTTCGTTATCA  90 40
         mak 3962554 .. 3962580 +  -2.2  -2.53581   CATTGCCTCAACATG         GCTGATAACACC AAT GGTTTTACCAGA         TGCATTCAGGCTATC  39 309
        phoB 3968350 .. 3968364 +  -2.8  -3.96148   CAGTGCCGGAGAATT               CGTTGT GTT AGAACG               TTTATCATGGAAAAC  53 46
        phoR NONE
CH54_RS17915 3970833 .. 3970845 +  -3.3  -2.90194   CTGACTTGCCTTTCT                CCGCT ATA AACGG                TCTACTTACCGCCGT  44 189
        brnQ 3972382 .. 3972402 +  -9.7  -4.72272   CATCGGATATTTTTA            GCCACGG CTCATCC CCGTGGC            TTTTTGCTGAAAAAA  93 50
        proY 3973849 .. 3973866 + -12.7  -5.93252   AATATCGAGTATCAA             GCCGGGA AATG TCCCGGC              TTTTTTATTTTTAAA 100 50
        malZ 3975988 .. 3976002 +  -8.5  -5.30616   ATAAAGATATTAAAA               GCGGC TAAGC GCCGC               TTTTTCTTTGGGTGA  93 85
CH54_RS17935 3977106 .. 3977124 +  -3.1  -3.41602   ACTGATGATGAATGC             GAGGC GCATCCACG GCCTC             TTGTGGTGCCATACC  47 372
        queA 3981756 .. 3981779 + -12.4  -3.51924   GTTATTAGGATGAAA          GCGCAGTCTG TTAT CAGACCGCGC           TTATATCACTCAAAA  90 108
         tgt NONE
        yajC NONE
        secD NONE
        secF 3990219 .. 3990272 + -14.9  -5.30348   TAGTACAAAATATAA GCCCTGATGCCGACTGTATCTT-AGT GCT ATTGAAGATACAGTCGATGTTAGGGC TTTTTGTTATTGAAT 100 55
CH54_RS18000 NONE
        nrdR NONE
        ribD NONE
        ribE NONE
        nusB 3995762 .. 3995792 + -17.8  -3.22091   GTTGCATTAACGACT       TGAATTAAGGCCGG ATT CCGGCCTTAATTTA       TTGATCAGTTAACAT 100 44
        thiL NONE
        pgpA 3997335 .. 3997356 + -13.1   -3.5861   AGCCATTAGAACAAA           GGCATAACC GAGT GGTTATGCC            TTAATTATTATCACT  95 43
        thiI 4002673 .. 4002698 +  -6.2  -4.91977   GTCATAAACAACACG         TTGATCCATC CATTTT GTTGGATCAA          TTTTGTCTTTTAATG  82 512
CH54_RS18065 4004806 .. 4004839 + -13.4  -2.70994   GCGACTGATACTTAG     CTAAATCAGGTACA AAATTC TGTACCTGATTTGG      GTTATATCGCGTTAA  90 33
        bolA 4015528 .. 4015549 + -13.7  -3.65996   TAGATGAGAATTTTG           CAGGCGGCC TTAG GGCCGCTTG            TGTTTCTGTATAGGC  95 122
         tig 4017234 .. 4017257 + -11.6  -5.50723   TGGTGTATTGAAAAA          GCCCGTAGCC TTCT GGCCGCGGGC           TTTTTCTTTTAGTAA 100 76
        clpP 4018369 .. 4018383 +  -5.7  -4.14627   ATTCTGTGTTCACCC               GTCGT GACTA ACGAC               TTATTTCTGTGAGCC  67 15
        clpX 4019906 .. 4019924 + -13.2  -4.91852   TGGTTAGTATGACAA             TGGGGGAT TTT ATCCCCCA             TTTCTTTTTCCTCGC 100 59
         lon 4022455 .. 4022482 +  -6.3  -3.87627   ATTGATAAAACTGAT        GCTGGGAAGTG AAATGC TACTTGCCAGC         TATTTTCTGTGCCGC  66 59
        hupB 4023016 .. 4023035 +   -10  -5.75342   AAGGTAAGATACAAG            GCGCATCG TTAA TGATGCGC             TTTTTTTTCGCGCAG 100 130
        ppiD 4025081 .. 4025096 +  -8.2  -3.65425   GATGTAACAACGAAA              GGTCGC TTTG GCGGCC               TTTCGCATATCTAAA  70 80
CH54_RS18150 4025614 .. 4025649 +  -8.4  -3.72576   ACGTCAGTTATAAAA    GAGTCAGACGGGTATT AGTG AGTATTTGTCTGGCTC     TTTCATCACAAACAA  73 41
CH54_RS18155 4026557 .. 4026570 +  -2.3  -3.85817   TAATAATCTGCCAAT               GCCCA TGTC TCGGC                TTTATCAAGCCACAT  52 313
         cof 4029864 .. 4029879 +    -9  -6.13503   GTAGCTATTAGCCAG              CCGGAT AACC ATCCGG               TTTTTTTTCTTCCTC 100 79
CH54_RS18180 4031588 .. 4031600 +  -3.3  -3.12327   AACTGCGGAGTGTGG                GTTGC TTG GCATC                TATTGGGTATAAAAA  46 57
CH54_RS18185 NONE
CH54_RS18190 4035419 .. 4035436 +  -5.5  -2.97667   TATCGTGGTGCACTT             TTGCGAC GCGC GTCGCAC              TAATTTGGTGCGTAA  53 202
        glnK NONE
        amtB 4037334 .. 4037355 + -15.9  -3.99374   ATGATGGTAGCAACA           GGGGCGATG GCGA CATCGCCCC            TTATTATTGATGGCG 100 69
CH54_RS18210 4039050 .. 4039081 +  -7.2  -2.52023   CTGCAGTGTCTTGAA      CTGTGGCGCTAAAG CTCA CTGTAGCGCCAGCG       ATATTGCTGTAAATC  59 61
         ffs 4040266 .. 4040297 +  -9.6  -3.68962   ACAACCCGCTGACTG      CATTGAAGCCGATAA CAA TTATCGGC-TCAACG      TTGTGTGTCTTAACC  79 479
CH54_RS18235 NONE
CH54_RS18240 NONE
CH54_RS18245 4044806 .. 4044828 + -14.9  -4.18197   ATGACAAATAGAAAA           GCCCCGTTG GGCAG CAACGGGGC           TTTTGACTGCAACAT 100 101
        acrR NONE
CH54_RS18300 4056054 .. 4056065 +    -3   -3.8211   AGCTATTCACGCTCT                GAAA GACT TTTC                 TTATTATGACTCGAG  53 140
        mscK 4059652 .. 4059673 + -10.9  -3.06183   AATGATTCACAGCAA           GGCGATATG TGCT CGTATCGCC            TTGGCTGCACATCAA  78 87
CH54_RS18320 4061295 .. 4061326 +  -5.8  -3.88498   GCGCGGGATCTTCCC      TCGCTGCGCCCTTA GCGT TAAGGGGGCAGGCA       TTTACTCTGTCGACG  63 97
         apt 4062017 .. 4062042 + -11.9  -3.05963   TTGTACTGAAAATAT         CAGCCTCGCTG TCAA TAGTGAGGCTG          TGTTAGCATGACCCT  82 41
        dnaX 4064065 .. 4064100 +  -3.2   -2.5547   ATCCGACCGGTTTAA    CCGCTGCGATAAGTGCA TGG TGCACTGA-CGCGGCCC    CTTGCTATGAGAGAT  42 26
CH54_RS18335 4064432 .. 4064445 +  -2.3  -2.64099   ATGCAATTACCACCA               GGCTT TAAG ATGCC                GTTCTGATGCAAACC  40 5
        recR 4065142 .. 4065165 +  -3.8  -5.14477   CTCATTCGTGATGTT          CAGTAAATCG CCCC CGATTCTCTG           TTTTTTCAGTATGTA  74 110
        htpG 4067279 .. 4067307 + -15.3  -6.25578   AATTTAGTATTAGAA        CGCCTCGAGCAGA TAA TGTGCTCGGGGCG        TTTTTTTTATTTAAT 100 39
         adk 4068163 .. 4068179 + -11.5  -4.68601   TGGTAAGATAGCTAA              GGCGGCC TAG GGTCGCC              TTTATTATTTTACAT  95 48
        hemH NONE
CH54_RS18360 NONE
CH54_RS18365 NONE
CH54_RS18370 NONE
CH54_RS18375 4073846 .. 4073871 +    -2  -3.87815   ATAGTTAAACTTAAC         GTAAATATTA TTAATT TAATCTTTAC          TTTATAGCAATAGAA  51 105
CH54_RS18380 4075083 .. 4075100 +  -4.3   -3.2818   GAAATAAACTTGGGG             TTAAAAT GCCA ATTTTAA              TATTATCACTATTAG  52 104
CH54_RS18385 4076124 .. 4076134 +  -2.6  -3.26204   ATTAACCTATTTAAA                 TTTA TAG TAAA                 TTAATGAATTTAATT  44 36
CH54_RS18390 4078113 .. 4078130 +  -2.7  -3.01018   TTGCTCATTGATGGT             TTTGAGA ACGC TCTCTAA              TCATATTTTCATTTT  43 30
CH54_RS18395 NONE
        galE NONE
CH54_RS18405 4081875 .. 4081920 + -29.5  -2.78596   ATTGGATAGAGCACA TCAACTATAAATAGGGCCAGC ATAT GCTGGCCCTATTTATAGTTGA TGTGCTAACACAGTA 100 304
        ushA 4087391 .. 4087401 +  -6.8  -3.53091   CCACTGCCAGATTTT                 TGGC ATC GCCA                 TTTAACGCAACCAGT  61 396
        cueR 4092271 .. 4092294 +  -8.2  -2.65112   TTGAGATATTGTTAA          TGGCGCATTT AGAT AAATACGCCA           TCATATCAATGCATT  61 50
CH54_RS18470 NONE
CH54_RS18475 4099411 .. 4099426 +  -7.5   -4.4261   TTATAACTTAGCTTG              CGCCC AGCGCA GGGCG               TTTTGGTATTCCGCA  78 79
        cysS 4104087 .. 4104115 + -12.6  -5.42862   TAAGATTAAAAAAAT       TGCGGTT-CTGGT GTTG ACCAGTAACCGCA        TTTTTTTGCCCATAT 100 124
CH54_RS18515 4105901 .. 4105913 +  -3.3  -5.12068   TCAACACGCATTTTC                CTGAC CTC GGCAG                TTTTTGTTCCATCTG  75 348
CH54_RS18600 4115411 .. 4115423 +  -3.3  -3.87075   TACCCGCGATGTGCA                GCCCT CAG AGAGC                TTTGTGAACGCTGCT  54 440
CH54_RS18620 4116684 .. 4116701 +  -9.8  -3.59895   TACAGGCACAAAAAA             CCCGGC AGCGGG GCCGGG              TTGGTTTGGCTTTAT  77 46
CH54_RS18635 NONE
CH54_RS18640 NONE
CH54_RS18645 NONE
CH54_RS21795 NONE
CH54_RS18650 NONE
CH54_RS18655 4122092 .. 4122106 +  -3.5  -2.71144   AATGAGCCTAAACAG              GCTGCC AACT GGC-GC               TAATTCGAGGAAATC  43 8
CH54_RS18660 NONE
CH54_RS18665 NONE
CH54_RS18670 NONE
CH54_RS18675 NONE
CH54_RS18680 4124093 .. 4124112 +    -5  -4.25104   CGCCAGCGAAATACC            CACATATG ACCA CATATGCG             TTTTGCTGCGAGCAA  65 53
CH54_RS18685 NONE
CH54_RS18690 NONE
        rusA NONE
CH54_RS18700 4126217 .. 4126234 +  -9.1  -5.63517   CATACCAACTTTTAA             GGCTCAC TTCG GTGGGCC              TTTTTTATTTACGGA 100 389
CH54_RS18705 4126560 .. 4126570 +  -2.4  -2.96232   TTGCGCAGATGTTAA                 CGCG TAA CGCC                 TCGTTTAAATAATTT  42 3
CH54_RS18710 NONE
CH54_RS18715 NONE
CH54_RS22180 4128204 .. 4128225 +  -8.7  -5.60993   AACAAAGAACATGAA           GGCTCAGTT TAAC GACTGGGCC            TTTTTTTGTACCCGC 100 350
CH54_RS18725 4129119 .. 4129147 +  -6.1  -2.76263   GATAATAAAGACAAA        TTGAGAGCC ACTTTCACAAC GGCTCTCAA        TCATTACCTACTGGA  55 63
CH54_RS18730 4129444 .. 4129480 +  -5.2  -3.24161   ACAGAGTTTATAAAA    TTCTGCAAAAGGTGCT GATTA AGTGCCTTTGACAGAA    TCTTATAGAGGTTTC  53 28
CH54_RS18735 NONE
CH54_RS18740 NONE
CH54_RS18745 NONE
CH54_RS18750 4133691 .. 4133706 +  -3.9  -5.06414   GCAACAAAAACAGAA              GGCTG CTTAGA CGGCC               TTTTTATTGCCCGAA  74 16
CH54_RS18755 NONE
CH54_RS18760 NONE
CH54_RS18765 NONE
CH54_RS18770 NONE
CH54_RS18775 NONE
CH54_RS18780 NONE
CH54_RS18785 NONE
CH54_RS18790 NONE
CH54_RS18795 NONE
CH54_RS18800 4139040 .. 4139053 +  -9.5  -5.67283   CTGATTTTCCCCTGG               CGGCC TCTG GGCCG                TTTTTTATTTCAATT 100 37
CH54_RS18805 4139819 .. 4139829 +  -5.4  -3.61715   CGCATACCGCCACAA                 CTAC CGC GTAG                 TTATTCCAAAGGGTG  60 15
CH54_RS18810 4140628 .. 4140645 +  -9.1   -5.4505   AGCAGCATAACCTAG             CCCTGTC ACTC GACGGGG              TTTTTTATTGCCCGG  95 31
CH54_RS18815 4143799 .. 4143815 +    -3  -2.65476   ACGCACCCAGGAGGG              CGACAA ATTGA TTGTTG              ATTATCCTGACTGGT  41 15
CH54_RS18820 NONE
CH54_RS18825 NONE
CH54_RS18830 NONE
CH54_RS18835 4147624 .. 4147637 +  -9.5  -4.78149   CATAGAAAACGACAG               CCCGC TCCG GCGGG                TTTTTGCATTCTGGC  93 43
CH54_RS21945 4148417 .. 4148451 +    -5  -3.01918   CCCAGTAAAAACGAC    GAAACCCCG-CAGTG CTCGAA CACTAACGGGGCTTC     TAATTTGTCAAATAC  51 33
CH54_RS18845 NONE
CH54_RS18850 4150194 .. 4150209 +  -6.1  -4.86939   ATTACCAAAGCCCAA              CCCAC TTAACT GTGGG               TTTTTGCGTTTGTTA  82 54
CH54_RS18855 4150795 .. 4150808 +  -8.1  -2.81815   CCCTAATGTGAGGTA               GCGCA TCCT TGCGC                TGATTAATGATTAGA  62 88
CH54_RS18870 NONE
CH54_RS18875 4152812 .. 4152829 +  -8.4  -5.60993   ATATCACCCACCCAA             CCCAGC CAATGC GCTGGG              TTTTTTTATGGAAAA 100 89
CH54_RS18880 4155503 .. 4155517 +  -5.6  -4.66002   AAACCTTACAAGCTC               TCCGAC GGT GGCGGA               TTATTTTTATTAGTA  73 506
        ccmA NONE
        ccmB 4158632 .. 4158666 +  -3.5   -3.2032   TTGTGCGCCGTACCC     TGCACCGGTATTGCC AAGAC GGTGATGCCCGTCCA     ATTTTAATGTGAGCA  46 151
CH54_RS18910 NONE
        ccmD NONE
        ccmE 4160156 .. 4160170 +  -2.8  -2.61869   GGGTGAGGGCAATGC               TTCATG ATT CCTGAA               ATTGGTGGTTTCTTA  41 19
CH54_RS18925 NONE
CH54_RS18930 NONE
CH54_RS18935 NONE
        ccmI 4164424 .. 4164439 +  -7.6  -2.50307   AATAAATAGACAAAT              CCCTTA AATA TAAGGG               GTTGGTAAGAATTTC  59 19
        mlaA 4165259 .. 4165272 +  -9.5  -5.60993   CCTGAAAATAAAAAA               GCGCC GTAA GGCGC                TTTTTTTGTGGGCAA 100 53
CH54_RS18955 4167337 .. 4167357 + -10.4  -4.24075   TGAATACCCCTAAAA            CGCGGAGC TTTTT GCTTCGCG            TTTGTATTGATACCT  89 74
        fadI NONE
        fadJ 4171451 .. 4171470 +  -7.2  -3.55444   TATCGTTATGAAGTT            TCTTTGCT TTCA AGCAAAGG             TTTCGGCGGTACAGC  66 323
        sixA 4172069 .. 4172090 + -10.1  -2.79679   GCTAATGTTCAATAA           GGTGCGGCA TCAC TGTCGCGCC            TCTACTCGCCATATT  73 67
        prmB NONE
        aroC NONE
        mepA NONE
CH54_RS18995 4176862 .. 4176872 +  -5.4  -2.58579   TCTTACGGACCCAAG                 CATG ACT CATG                 ATTATCAGCAATTAA  51 261
CH54_RS19000 NONE
CH54_RS19005 4178183 .. 4178236 +  -6.7  -3.06133   TTGTTCACTTGCTGC CTACCTGCGACGTCAATGACTTTTGG GAT TCATATGCCCTTGAAGTCGCAGG-AG TTAACTACGCGATTC  59 471
        fabB 4181759 .. 4181778 + -13.6  -5.69793   ATTCTTTATAATTAG            GCCTGCGA GAGA TCGCAGGC             TTTTTTATTTGCTAT 100 69
CH54_RS19020 4183306 .. 4183316 +  -6.8  -3.35798   AAGATAATCCCTTGC                 GCAC CTA GTGC                 TTCTAAATGGCCGAT  59 190
CH54_RS19055 4190314 .. 4190329 +    -4  -3.53224   TCCAGATATGCCCGC              CAGGAA ATGA TTTCTG               TTTAAAACAGCGCTG  52 16
         agp 4191924 .. 4191941 +  -6.9  -4.06419   TGGCATTAAATGGCA             GGCTGCG CTAA CGTGGCC              TTCTTTGTCAGCCCC  71 88
CH54_RS19065 4193231 .. 4193242 +  -5.8  -4.07687   ATGAGCGCGACAAAA                GCCA GTGA TGGC                 TTTTGCAACAAAGGT  66 146
CH54_RS22190 4194897 .. 4194917 +  -4.7  -2.86477   TTTCCGGGAATAGAA            CAGCAACTT TCT ATGTTGTTG            TAATTAATCTATTTT  48 28
CH54_RS19080 NONE
CH54_RS19085 NONE
CH54_RS19090 4198270 .. 4198291 + -10.1   -5.4251   CTCATTACTCGACTC           GCCCGGTGT GATT ATGCCGGGC            TTTTTTCTGTCTGAC 100 53
CH54_RS19100 4200980 .. 4201000 +    -9  -2.62184   CACCTTGATAATTTA            TTGCGCCG TTTTT CGGCGTAA            TGGTGTGCGCAGACG  67 33
CH54_RS19110 NONE
        pdxB 4204103 .. 4204116 +  -3.9  -3.66819   GTAAATGACCATTCT               GTTAT TTGC ATAAC                TCTTTGTAATTTAAT  54 166
CH54_RS19120 4205144 .. 4205157 +  -6.7  -2.84634   AACGGCGGAGCGCCT               GTTGC AGGA GCAAC                TATACTGATGTCCGA  57 4
        truA 4206110 .. 4206128 +    -6  -2.95942   AGTTCAGCTAAACTC             GCTCAATC AAA GATTAAGC             TCGTTTACCTCTCGA  56 128
CH54_RS19130 4206963 .. 4206975 +  -4.1  -4.23353   GCTACATTGTACCGG                CCTAT AAC ATGGG                TATTTTTATTGGTTT  61 174
        accD 4207981 .. 4208009 + -15.3  -2.90804   GCCTGATTAACTGAA        CGGGCATCACCCT GAT AAGGTGGTGCCCG        ATTATTGTGCATTAT  95 35
        folC NONE
        dedD 4210369 .. 4210401 +  -8.6  -4.13995   TTTAACGCTAAGTTT     GTGCGGTGATTGTTG TTTT TAA-AATCGCCGCAC      TTTAATTTGTCGCCG  82 81
        cvpA 4210994 .. 4211007 +  -2.3  -2.57132   TTACCGAATCAATTA               CCGAT TCGG AGCGG                CTTATGAGGAAAAGA  39 5
        purF 4212616 .. 4212645 +  -7.2  -5.71712   AGTGTGAATCAAAAA      GGTGCAACCAGCGT TCAA GCGC-GGT-GCACC       TTTTTTTATGTAAGA 100 97
CH54_RS19160 4213392 .. 4213413 +  -3.1  -3.37487   GCACTGAAATGGGGC           GCATTAT GCACCACA ATAATGC            TGTTTCAGAATGTGC  48 76
        argT 4214450 .. 4214473 + -11.7  -3.96469   CGCTGGATGAAATAA          CCCTTGCCC TAATTT GGGCAGGGG           TTGTTATTGGGCTAT  91 44
CH54_RS19170 NONE
CH54_RS19175 NONE
        hisP 4216785 .. 4216811 + -13.8  -2.63991   GTAAATAAGGGTTGG         GCGGGATAGTTA TTT TATCTATCCCGC         GTTAATTCAATTAGG  91 37
CH54_RS19190 4218990 .. 4219004 +  -2.2   -5.0538   TTTTACAATAACTGC               TTTTTA CGA TAAAAG               TTTTTTACGATAAAA  69 101
        yfcE 4219724 .. 4219736 +  -6.3    -4.183   ACCATATAATATAAT                GAGTT GAA AACTC                TTTGTTAACAATTGC  71 32
        yfcD 4220358 .. 4220373 + -10.4  -4.85433   ATCAGCCATAAAAAA              GCCCCT TTTC AGGGGC               TTTTTACGTTTATCT  93 46
CH54_RS19220 4223766 .. 4223784 + -11.7  -4.05788   AGCACCCAACAAAAA             CGCCAGC ACAAG GCTGGCG             TTTACTTTGAGCAAC  91 60
CH54_RS19235 4228369 .. 4228384 +  -7.6  -3.28924   TGTGTCGCGCGGCAT              TGTCAG GGAA CTGACA               TTATCAGGAAAAATA  65 70
CH54_RS19240 NONE
CH54_RS19245 4229778 .. 4229795 + -10.5  -4.93696   AAATAGCCAAACTTA             GGGCGCC TGAT GGCGCTC              TTTTTACTGTTTAGC  93 52
CH54_RS19255 4232716 .. 4232730 +  -9.2  -4.44548   GCGTGACGCCTAAAA               CGGGCG TCC TGCCCG               TTTTCCTTGCCTATA  86 140
        rovM 4237464 .. 4237481 +    -7  -6.11229   CATAAATTATCATAA             GCTCCT TATTTT AGGAGC              TTTTTTTATTTTCAT 100 52
        nuoA NONE
CH54_RS19280 NONE
        nuoC NONE
        nuoE NONE
        nuoF NONE
        nuoG 4246111 .. 4246123 +  -4.8  -2.64091   GCGCGCGTTGAGAAT                CTGC GGGAG GCAG                TGCTATGAGCTGGTT  49 5
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK NONE
        nuoL 4250376 .. 4250394 +    -3  -2.98813   TTAGGGACACAAAAC             GCCATGCT ATT ACCTTGGC             TAATTCTTATCCCCT  43 41
        nuoM NONE
        nuoN 4253392 .. 4253418 + -11.5  -5.24647   AATCGGCAAGTCCAA         CCCCCGTTCAG CAAAA CTGGCCGGGGG         TTTTGTTTTATATGT 100 51
CH54_RS19340 4254271 .. 4254284 +  -5.3  -3.43756   CAGCTTTTCATTTAG               GTGAT GAAC ATCAC                GTTTTTGATGAAATC  54 22
CH54_RS19345 4255123 .. 4255138 +    -9  -2.59668   ACTTTAACCACTATC              TTGCGC AGCG GCGCAA               CTTCTCCCAGTGTTG  63 235
CH54_RS19365 4258530 .. 4258547 +  -2.7  -4.66318   CAATGATAGGTCGGT             CACGTTA CCGG TAACATG              TTTTCTTAACATGAT  65 241
CH54_RS19370 4259775 .. 4259806 +  -6.8  -3.65046   AATTTGTTAGCGGCA      TTCTCTACGCTATTT TCT GAATAGTGTAG-GAA      TTATTCAGCTAGAGA  66 140
CH54_RS19375 4261155 .. 4261165 +  -8.2   -3.5032   TTAAACGCGCTTAAG                 CCGC CAA GCGG                 TCTTTACTGTAAAGG  68 27
CH54_RS19380 NONE
         edd 4263641 .. 4263664 +  -8.8  -2.77005   TGTCGCCTCATATCC          CTGGTGGCTC ACTC GGGCCACCAC           CTTTGGCGGTTAGTT  66 121
CH54_RS19390 4264172 .. 4264189 +  -9.8  -4.78149   TATTCTACTCATTCT             CGGCCC TTAAAT GGGCCG              TTTTTAAGTTATAAA  93 84
CH54_RS19395 4266852 .. 4266873 + -10.1   -3.6106   TTAATTCAATACAGA           GGGCAGGGG GGGA TTCCTGCCC            TTTCCCCCTATTAAG  79 37
CH54_RS19400 4268553 .. 4268566 +  -2.3  -4.07687   TATCGGGATTGCAGT               GTCTG TTAA CTGAC                TTTTGGGCGAACCAT  53 171
        menD NONE
        menH NONE
        menB NONE
        menC NONE
        menE 4274417 .. 4274434 + -12.7  -3.32844   GCTTCAACCGCCAAA             GGGTGCG GGCG CGCACCC              TTGTGGAATCCCGCG  87 129
CH54_RS19435 4277526 .. 4277551 +  -8.3  -5.28414   TTTTCTGTAAAAAAA         GGCGCA-CTCCT GAC AGGATATGCGCC         TTTTTGTATTTATTC  93 51
CH54_RS19445 4280231 .. 4280259 + -11.7  -3.03635   GGCGGTAGCACAACA        CCGAAAAAGGCCG CGT CAGCCTTTTCCGG        TGTTCGCGAGGTTTA  82 52
        gyrA 4289019 .. 4289036 + -11.3  -5.28778   TTGTCAAAACCAAGA             GCCAGCT TACG AGCTGGC              TTTTTTATGCGTCAT 100 62
        rcsC 4292459 .. 4292470 +    -3  -5.24449   CAGTTTGGCCACACT                TTCA GGAG TGAA                 TTTTTTCCCTTTCTG  77 505
CH54_RS19500 4310274 .. 4310285 +  -2.2  -2.53911   GGCGGTGATGGTGTT                GTCA ATCA TGGC                 TCAGTTGCCCGTTCG  39 156
CH54_RS19505 NONE
CH54_RS19510 NONE
CH54_RS19515 4315081 .. 4315115 +  -7.4  -3.24925   AGCCAATGAGCAGCA     GGATTATAGTTAGT CGATAAA GCTAACTATAATTC     TTAATCATCTGAACT  63 122
CH54_RS19520 4316784 .. 4316801 + -10.5  -5.24129   GAGGTTCTGATAAAA             CGCGGTC ACTT GGCCGCG              TTTTTTGTGCCCGCC 100 55
CH54_RS19525 NONE
CH54_RS19530 4317165 .. 4317191 + -15.3  -4.98531   CGGCACCAATTAAAA         GCCCGTTATCT GAATA AGATAACGGGC         TTTTTGCTTTCCGAC 100 33
CH54_RS19545 4321662 .. 4321675 +  -4.5  -2.62244   GGCCGCGGTTGATTC               CTGCA CCAA TGCGG                CATTTTGTTGCACCA  46 164
CH54_RS19565 4325994 .. 4326011 + -10.5  -3.10344   ATTTACTGTAATAGA             CCGGGCT GAAC GGCCCGG              TATGTTCACTCGCCG  75 266
CH54_RS19570 4326894 .. 4326928 +  -2.1  -5.42605   TTACATGTTACATAT     TCCAAGTCACGGTTT TTGTT ATATCGTGACTTCGC     TTTTCTTTTTGTTAA  76 54
CH54_RS19575 4328590 .. 4328607 +  -8.4  -2.75455   AATATTTAATGTTCG             GACGGG CTATCA CCCGTC              ATTGATTTCCATTTT  66 41
CH54_RS19580 4330127 .. 4330148 +  -9.4  -3.36492   TTTTTATCAGAGAAA           GCCGCTCA ACCATA TGGGCGGC            TTATAACATTGCCAG  75 54
        yejK 4333840 .. 4333869 + -18.1  -3.57144   ACTTTATTCAGCTAA       TAAAAAACGCCGC AGAA GCGGCGTTTTTTA        TTTCGGCGTCCCGAA 100 55
        rsuA 4337232 .. 4337251 +  -2.8  -2.56596   CATGCGGCTTGAAGT            CTGACGAGT ACA ACCCG-CAG            TAGGTTAGTGAAGGA  41 71
CH54_RS19620 4338512 .. 4338543 +    -3  -4.63048   ATCGCTATCAAGAAA      TGTGAGGGTCGAT GTTCCCA AGCG-CCCTCACG      TTTATTATTTGTAGC  62 40
CH54_RS19630 4339534 .. 4339579 +  -4.2  -5.31275   GCGATTGCCGAGACC ATGAC-AGCACTTTATCCC TTCTGATTT GGGATGAAGTGTTCGTCAG TTTTTTATGCTGACG  78 2
CH54_RS19685 4350432 .. 4350454 +   -15  -3.64915   ATCCTATCATAAAGA           CGGCTTATCA CAT TGATAAGCCG           TTGTCGTTTGTCGGA 100 61
CH54_RS19690 4351807 .. 4351837 +  -8.2  -4.08064   GTGGCAATTTCTGAC       TACCGTCCATGGCA ATT TGCCAGGTGCGGTG       TTTTAACGACGGGTT  76 483
        uxuA 4354537 .. 4354561 + -17.3  -2.76418   TCATCTTTCAATACA          TTAAGGGCCGA AAA TCGGCCCTTAA          CTATTTATGTCCAAA 100 45
CH54_RS19715 4357877 .. 4357905 +  -8.9  -3.25192   GATGGCTTCGCGATC        CGCCACTGC ATATTTTTCGC GCAGTGGCG        TGTTATCCAATTGCG  70 294
        fruB NONE
        fruK NONE
        fruA 4362488 .. 4362505 +  -7.7  -5.77988   TGCTAATAAGAAAAA             CCGGC-CT CCA AGTGCCGG             TTTTTTTATATCTAT 100 65
        yieE 4368486 .. 4368498 +  -3.3  -3.46387   TTGTTACGGCAAGAA                TACCC CGT GGGAA                TGTATTTATTCTGAT  50 115
CH54_RS19770 4370189 .. 4370208 + -12.2  -5.06451   ATGCACTAGATGAAA            GGGCGATA ACAT TATCGCCC             TTTTTTAGGATGATG 100 48
CH54_RS19780 4373226 .. 4373252 + -12.3  -3.60661   GCACTTGAAGCCGCA         GGGGAGCGAGA GCCAA TGTCGCTCCCC         TTATCTAATTAGCTC  90 310
CH54_RS19795 NONE
CH54_RS19800 NONE
CH54_RS19805 NONE
CH54_RS19810 4378731 .. 4378775 +    -3  -2.75382   CTGTCTGTTCTTGAC GCCCTCCCTT-T-AACCTATCA AAA TGATAGGTACAGAAGAGAGGGG TAATTGAATGGAATC  42 107
CH54_RS19815 NONE
CH54_RS19820 4379611 .. 4379640 + -13.8  -4.34263   CTGGTACTGTTGACT       TACGGTAGGAAT ATTGCC ATTCCTACCGTA        TTTGTCTTATTAAAC 100 43
CH54_RS19835 4383983 .. 4384010 + -12.8  -3.05616   CGCTTTATCAATAAG        TTAAGGGCGACT ATCA AGCCGCCCTTAA         GTTTCTATGCTAATA  84 203
CH54_RS19880 NONE
CH54_RS19885 4395272 .. 4395291 +  -7.2  -2.77523   CAACTGCGGTTATGC            TGCTCTTT CTGC AAAGGGCA             TAATATTCCTCCGCA  60 249
        potF 4396651 .. 4396681 + -10.5  -5.55769   TAAAATAGACCATGG       TAGGGACAGGGAG TTTAT CTTCCTGTTCCTG       TTTTTTATTGTGCCG 100 103
        potG 4397850 .. 4397860 +  -3.2  -3.10056   TTGCTGGGATGCCGA                 CAGC TGT GTTG                 TCTTAGGTAGCTGAT  46 1
        potH NONE
        potI 4399811 .. 4399834 + -13.2  -3.30124   TCTTTCATTATCTTT          TGACGCCGCT TTCG AGCGGCGTTA           TTGTCAGGGATAACA  93 132
CH54_RS19910 4400446 .. 4400456 +  -2.6  -2.52543   AATATCTAAGAACGG                 TTAA TTA TTAA                 TGCATTGCGCACAAT  41 120
        rlmC 4401578 .. 4401599 +  -3.7  -3.10112   TCCTTACTTACCCTG           CGCCCTTGAC GCT GT-AGGGGTG           TTGGCTGCATTCACT  48 17
CH54_RS19990 4420181 .. 4420202 +  -5.1  -4.72986   CTCAAGTAGCTGATA           GCG-GCGG CGATATT CCGCGCGC           TTTTTGCTCGCAATA  75 97
        macA 4422375 .. 4422390 +    -4  -3.17075   CGGCACGGAGGATGC              GTAATG ACGG CATTGC               TTGAATTAAAAGACA  48 22
        macB 4424389 .. 4424411 +  -9.9  -3.56366   TGTTAGAAATAAAAA           TGCCAGTCA TTATT TGGCTGGCA           TTTGGAAGCGTTATT  77 87
        clpS 4425468 .. 4425487 +  -3.5  -2.80816   AAAAAGCCTGATTAA            GGCAACT ATTGGG AGGTGCC             TATGCTCAATCAAGA  44 30
        clpA 4427816 .. 4427843 + -13.6   -5.5454   TAAGAGCGAAATAAA        GGGCGATAAGCTA ATT TAGCT-ATCGCCC        TTTTTATTTCTTTGC 100 76
         lrp 4435582 .. 4435601 + -11.4  -3.23692   TTCATACAGTTTCAA            CGCCGGGA GGGT TCTCGGCG             TTGCTACTCATACTA  82 86
CH54_RS20055 4439270 .. 4439286 + -15.1  -3.28712   TAGTTAACATAGACA              GGGCCGC TTT GCGGCCC              TTATGCAAAGAAGCG 100 56
        lolA NONE
CH54_RS20065 4441455 .. 4441487 + -11.3  -2.87344   CCCGATAAAACGCTA      CCGCTAGCCTTGCTG TTG CGGTAAGGTTAGCGC      TATATAGAACGGCTA  80 19
        serS 4442972 .. 4442985 +  -9.5  -5.61881   TCAGGCAGTTATAAA               GCCCC CTTG GGGGC                TTTTTCTTTTTGCGA 100 72
CH54_RS20075 4444305 .. 4444337 + -10.6  -2.72344   TAACCGCTAAAAAAA     TGCCGCCA-GTGGGG TAAA CCTTGCATGGCGGCA      TGATTAAAAATCAGC  76 38
        ansB 4451893 .. 4451910 + -10.5  -3.23456   CTAGTCAAACTCTGA             CGGGGGC TTCG GCCTCCG              TATCTCTTTAATTCC  75 42
CH54_RS20105 4452810 .. 4452822 +  -9.1  -3.18912   TGCTGTGGAAGAGAG                GGCGA GTT TCGCC                TTCGTGAGTGAATAA  70 121
        serC 4454043 .. 4454071 + -16.8  -3.14564   TTTATTAAGTAATTA        CAACAGCCCCGT CCTGT GCGGGGCTGTTG        TTCATCAAAGACTGG 100 66
        aroA 4455418 .. 4455437 +  -7.9  -5.60689   TTTATCAGCATGAGA            TGGGTAC CAGTGA GTACCCA             TTTTTTATTCTGTAA 100 56
         cmk 4456412 .. 4456428 +  -5.3  -3.27901   CTGAGCTCTCAATGA              TTTATTT TTT AAATAAA              ATTATTTTTGATGAG  54 58
        rpsA NONE
        ihfB 4458654 .. 4458673 + -10.7  -5.63012   AAAGCTGATACGAAA            CGGTGCC CCTAAA GGCACCG             TTTTTATTTGTTTTT 100 113
CH54_RS20135 NONE
        msbA NONE
        lpxK 4464347 .. 4464365 +  -3.8  -3.39216   CGCATTGCTGGATAA             TTATCCGG AAA CTGGCTAA             ATTTTTCGCTAAGAA  50 393
CH54_RS20155 4466267 .. 4466294 +  -9.8  -5.51402   TGATCGCTTTCTAAG        CAAACGGCTACC CAAG GGTAGCCGCTAG         TTTTTTTGCCTCTGT 100 27
CH54_RS20160 4466850 .. 4466865 +  -2.6  -2.78384   ATTGATGAGAAGCAC              GCA-TGA GTT TCATTGC              TATAATACCCGCCCG  42 20
        kdsB 4467632 .. 4467655 + -13.2  -4.16305   TTGTGCAGCTTTCCA          CGCCAAGCTC AGTT GAGTTTGGCG           TTGTTATTTCTGGAT 100 53
CH54_RS20170 4469032 .. 4469042 +  -2.4    -4.652   TAAACTTTCCGCTAC                 CTGC GCC GCTG                 TTTTTGCACTGCTTT  63 373
        cmoM NONE
        mukF NONE
        mukE NONE
        mukB 4476961 .. 4476977 + -13.7  -5.47159   ATTAATTCCATCCAA              TGGCCGC CTA GCGGCCA              TTTTTATTTGTTGCG 100 80
        ldtD NONE
CH54_RS20205 4479980 .. 4480011 +  -7.2  -2.87319   GGCTGCCCTTGCTCA      CCCCAGTCACTTAG CTAT CTAAGCTTCTGGGG       ATTTGCTCGGTTGCC  60 74
CH54_RS20210 4480814 .. 4480829 + -10.4  -4.46675   CGTCAGATCAAGGAG              GGCACC GTGA GGTGCC               TTTCTTATATTAGAT  90 82
CH54_RS20215 4482730 .. 4482748 + -14.6  -4.57073   CAGGAGAATAAAAAA             GGGTGCCT CTA AGGCACCC             TTTTTAAGGCCGGTC 100 50
        pepN 4491875 .. 4491896 + -10.2  -5.37345   TATTGTTTAAATAGA           TAGAGGGC ATAACG GCCCTCTA            TTTTTTATCCTTACA 100 77
        pyrD 4493182 .. 4493196 +  -5.8  -3.02144   TGGGTGAGAGCTCAG               TTATTG AGT CAATAA               TGTTGGCGAGCCTGG  53 154
CH54_RS20250 NONE
CH54_RS20255 4493537 .. 4493549 -  -5.5  -4.20712   CACAACAGCCTAAAA                CGTGG GTA CCACA                GAATGCGGCGCTGGC  66 499
        pncB 4487091 .. 4487104 -  -3.8   -3.7626   ATAAATAGTTAACAA               CCCA ACAAAA TGGG                GATATTGCTATGTTA  54 341
        asnS 4485591 .. 4485615 - -13.7  -3.39328   AACTTTAAAAAATGA          CAAAAGCCAGC AGA GCTGGCTTTTA          TTTATACAAAAACAC  95 61
        ompF 4484173 .. 4484192 -   -10  -5.54907   GGCATAAAACAAAAA            GACAGAGC CAAG GCCCTGTC             TTTTTTTAACTTAGG 100 72
CH54_RS20220 4482730 .. 4482748 - -14.6  -5.58179   CAGGAGAATAAAAAA             GGGTGCCT CTA AGGCACCC             TTTTTAAGGCCGGTC 100 53
        elyC 4468412 .. 4468427 -  -3.2  -3.58343   CGCAGTATGCTTAAA              GATCCC CGCA GTGATC               AATTGCTGGCGATGC  50 291
CH54_RS20150 4463993 .. 4464006 -  -2.4  -2.95656   AATCCAATTTATAGA               CTCA GTGATG TGAG                CTTTAGGGCCGCCGC  42 5
        ycaO 4448851 .. 4448864 -  -9.5  -5.71712   CTTGAGATAAAAAAA               GCGGC ATTT GCCGC                TTCATTGGTTAATTA 100 85
        focA 4447508 .. 4447523 -  -3.2  -3.04894   AATTTCTTCGAAAAC              CGTGTG CGGC CACACT               TAATGTTGCTGGTCA  45 25
        pflB 4445140 .. 4445159 - -11.4  -4.56367   TACTGGATAAATAAA            GGCCCCAC TAAG GTGGAGCC             TTTTAGTTTAATCTA  93 54
        pflA 4444305 .. 4444337 -    -4  -5.43866   TAACCGCTAAAAAAA     TGCCGCCA-GTGGGG TAAA CCTTGCATGGCGGCA      TGATTAAAAATCAGC  82 57
        trxB 4433238 .. 4433267 -  -9.2  -5.08367   AACAGAAATTAAAAA       CGGGCGGCTCAC GTATCT GTTAGCTGCCCG        TCGGTATTAGGTGAA  90 54
        cydD NONE
        cydC NONE
         aat NONE
        infA 4427816 .. 4427843 - -13.6  -4.49906   TAAGAGCGAAATAAA        GGGCGATAAGCTA ATT TAGCT-ATCGCCC        TTTTTATTTCTTTGC 100 192
        cspD 4424389 .. 4424411 -  -7.7  -5.38054   TGTTAGAAATAAAAA           TGCCAGTCA TTATT TGGCTGGCA           TTTGGAAGCGTTATT  93 140
CH54_RS19995 4419911 .. 4419922 -  -7.2  -2.65264   TGATGAGGTATATCA                CCGG ATAT CCGG                 TATTCCTGCAAATGC  56 227
CH54_RS19985 4417290 .. 4417306 -  -6.5  -3.08464   GGATCACGCAGTGAA              CCCAGTG GCT CACTGCG              TACAAGAAGAATTAG  56 37
         hcp 4415415 .. 4415458 -    -4  -3.01831   CTGGTAAAAATAGGA TTGATGCCCAGCCAGTG GTAATAAAGCG CATTGGCCGGGCAT-AA GGCAGTGAATTAATG  47 35
         hcr 4414341 .. 4414351 -  -2.6  -3.82205   TTAATAGAGCAAGAA                 TAAT TCT ATTA                 AGCCAGTTGGACATC  53 23
        poxB 4412363 .. 4412378 -  -6.1   -4.9138   AGGATTTAAATAAAA              CAGCC CCATGC GGCTG               CTTAATTTTTATCTG  82 164
CH54_RS19965 NONE
        ltaE NONE
CH54_RS19955 4408687 .. 4408702 -    -4  -3.44622   TATCTTCATAACGAA              TTCGGT TCCC ACCAAA               AATCAGAATGCTAGA  52 190
CH54_RS19950 NONE
CH54_RS19945 4406994 .. 4407012 -    -6  -2.71712   CGTTTTCTTTCAAAT             TGCAGC GGTGTTG GCTGCA             TTTTGGGCTGGTTAG  54 37
        artP 4405820 .. 4405832 -  -2.7   -3.2632   AAATTCCCAAATAGA                TATCA ATG TGACA                GATAGCTGGCAAAAG  44 15
        artJ NONE
        artQ NONE
        artM 4403552 .. 4403571 - -11.4  -3.32844   CGCGGGATTGCATAA            GGGGCCAC GCTT ATGGCCCC             TTTGCCGGTTGGTTC  85 128
        artJ 4401995 .. 4402008 -  -5.3  -2.73681   CACTTACCCGAATCA               CTTAC TTGA GTAAG                CTCATCGGGATGCGT  49 123
CH54_RS19875 4393532 .. 4393546 -  -8.5  -5.49234   ACAGGTAAGAAAAAA               GGGCC GCAAT GGCCC               TTTTTCGCATAAAAC  95 103
CH54_RS19870 4391354 .. 4391391 -  -4.2  -5.60689   CCAGACAAGAAAAAA  CCCGATAGTCTTGAACCT AAGA AGG--CGGGACTATCGGG   CTCCTCAATATGGGG  85 157
CH54_RS19865 NONE
        ybjG 4389667 .. 4389677 -    -4  -3.21276   TCTTTTGTTATAATA                 GTAA CAT TTAC                 AGTAAAAAACAAAGC  48 219
        deoC 4388849 .. 4388866 - -10.5  -4.23156   ATAGCCAATAAATAA             GCCCGGC AATA ACCGGGC              TTGATATCCATCATC  89 107
        deoR 4387932 .. 4387951 - -11.4   -2.7083   TAGCTGAGAAATGTA            CGGGTAGG ACTG CCCACCCG             GTATTTAAGCGGTTA  79 63
CH54_RS19845 4385598 .. 4385617 - -11.4  -3.09273   GCCGTGGAATAGAGA            GCCGATGC GGAC GCACCGGC             TTTTGAAACAATTAT  81 87
CH54_RS19840 4383983 .. 4384010 -   -15  -2.82895   CGCTTTATCAATAAG        TTAAGGGCGACT ATCA AGCCGCCCTTAA         GTTTCTATGCTAATA  95 62
CH54_RS19830 NONE
CH54_RS19825 4379181 .. 4379191 -  -6.8   -3.2048   CGGAAAGTGGATTAA                 CCAC AGT GTGG                 TTGGCTAATGGTTAT  57 491
CH54_RS19790 NONE
CH54_RS19785 4372997 .. 4373010 -  -5.3  -2.73681   CACTTACCCGAATCA               CTTAC TTGA GTAAG                CTCATCGGGATGCGT  49 276
CH54_RS19755 4365424 .. 4365434 -  -5.4  -3.79849   TAATTATATTAATAA                 TGAG TTC CTCA                 GAAAATGAAATATAT  63 89
CH54_RS19750 4363438 .. 4363455 - -10.5  -5.24129   CTGTGGCACAAAAAA             GGGCCGC CGAT GCAGCCC              TTAAACCATCATTAG 100 59
         nfo 4362488 .. 4362505 -  -7.7  -5.29445   TGCTAATAAGAAAAA             CCGGC-CT CCA AGTGCCGG             TTTTTTTATATCTAT  91 37
CH54_RS19725 4357766 .. 4357789 -  -3.8  -3.96624   TACCGTTATTACAAA          TCGAACCCGGC ACA GACGG-CTCGA          CGGGATCAAACCATG  59 239
         mtr 4355424 .. 4355436 -  -3.3  -3.06183   GCCAGTTTCAGGCAA                GCCCC AAA AGAGC                AAGATTTTCGCTATA  45 175
        yeiP 4354537 .. 4354561 - -17.3  -3.07344   TCATCTTTCAATACA          TTAAGGGCCGA AAA TCGGCCCTTAA          CTATTTATGTCCAAA 100 248
CH54_RS19695 4351410 .. 4351437 -   -15   -3.9712   GCACTCGATTAGAAA        GAATGAGCCCCA TTCT TGAGGCTCATTC         TGTAAGCTCGCTAAA 100 42
CH54_RS19680 4348675 .. 4348688 -  -3.1  -2.76399   TCCAAGTAAATTAAG               CAGTA ATAT TACCG                GCAAATTACGACGGG  44 108
CH54_RS21810 4348025 .. 4348040 -  -5.4  -4.57304   ACTTAACCAAATAAA              TGTGCA GGAA CGCACA               ATATTAATCAGGATA  73 93
        mepS 4347269 .. 4347285 - -13.7   -5.4505   TTCGGCAATAAAAAA              CGCTGCC AAT GGCAGCG              TTTCATCGTTTCGTT 100 71
CH54_RS19655 4345243 .. 4345255 -  -2.7  -4.06502   CAGGGGTAAAGCAAA                CATTA AGC CAATG                AGTTTTTGTTACGAA  55 34
CH54_RS19650 NONE
CH54_RS19645 NONE
CH54_RS19640 NONE
        yejF 4339484 .. 4339500 -  -2.1  -3.78953   ATCGTCAGGATGAAA              GTGCCAC TAT GTGCCGC              TTGAAAGATGTTGGG  50 154
CH54_RS19610 4334213 .. 4334238 -  -7.5  -2.91914   TTAAAGAAAATTAAC         CCTGCTACAGG CGAC CCAGCAACAGG          TTCGATACTCGGCTT  60 135
        rplY 4333840 .. 4333869 - -18.1  -3.07935   ACTTTATTCAGCTAA       TAAAAAACGCCGC AGAA GCGGCGTTTTTTA        TTTCGGCGTCCCGAA 100 58
CH54_RS19595 NONE
        yejM NONE
CH54_RS19585 4330372 .. 4330389 -  -7.7  -6.02919   CCACAAACAAAAAAA             CCAACCC TAAC GGATTGG              TTTTCTTAGGGTATT 100 42
CH54_RS19560 4324782 .. 4324801 -  -8.5   -2.6999   TTAAAATTGATATGA            GCCGGGC TGGGTT ACCCGGC             TTAATCGGGGTTAAA  65 36
CH54_RS19555 4323625 .. 4323674 - -14.7  -4.90471   ATTTAAAATACAAAA TCAGCATCAATACCGC-TGAAATA GGC TATTTCACACGACACTGATGCTGA TGATTTGTTATTACT 100 55
CH54_RS19550 4321265 .. 4321284 -  -2.8  -3.05463   ATTGGGGCCATTTAA            CTATGCGGC ATT GCCG-ATTG            GTGCTTATGCCCCGC  43 325
CH54_RS19540 4318511 .. 4318534 -  -9.5    -5.252   GACGGGGATAAAAAA          CCGCAGCGG GCAGGG CCGTTGCGG           TTTGGGGTAACTATC 100 49
        ampH 4317165 .. 4317191 - -15.3  -4.45544   CGGCACCAATTAAAA         GCCCGTTATCT GAATA AGATAACGGGC         TTTTTGCTTTCCGAC 100 83
CH54_RS19495 NONE
        rcsD NONE
        rcsB 4292168 .. 4292192 - -13.5  -4.37211   GAAAGGGATAATAAA          CCCGGCGCTGC TGA GCAATGCCGGG          TTGGGGAACAGAAGT 100 40
        ubiG 4285279 .. 4285293 -   -10  -3.16881   CACTTAGTGGACTAA               GCATCC TGG GGATGC               GTTCTGTTGCTGCCT  75 99
        nrdA 4282538 .. 4282576 -  -7.4  -3.33419   AGGGGCAAATGAAGA  GGCCC-CGCGATGAATG TATTGG CTATCATCGCGCAGGCC   TTAACTCAAAATCAG  65 37
        nrdB 4281303 .. 4281316 -  -5.3  -2.55213   CACTTACCCAAGTCA               TTGAG TTAT CTCAA                CTCCTTGGATGCATT  48 92
        yfaE 4280887 .. 4280912 -  -2.6  -2.94708   TATGCCCTAAATAAT         TCGAGTTGCAG GAAGG CGGCAACT-GA         GCAAACCCCCGGGAG  43 111
         eco 4280229 .. 4280261 - -19.3  -3.40403   CGGGCGGTAGCACAA      CACCGAAAAAGGCCG CGT CAGCCTTTTCCGGTG      TTCGCGAGGTTTATT 100 36
        tyrP 4277526 .. 4277551 - -10.5  -5.40072   TTTTCTGTAAAAAAA         GGCGCAC-TCCT GAC AGGATATGCGCC         TTTTTGTATTTATTC 100 47
CH54_RS19430 4274825 .. 4274844 - -11.4  -3.32844   CGCGGGATTGCATAA            GGGGCCAC GCTT ATGGCCCC             TTTGCCAGTTGGTTC  85 140
        idnO NONE
CH54_RS19355 NONE
CH54_RS19350 4255056 .. 4255071 -  -3.2  -3.68265   AAAGCGAACCGTAAA              GTTCTG ACAA CCGAAC               AGGATCATCAAATTA  52 43
CH54_RS19265 4234162 .. 4234176 -  -2.2  -4.99035   TTAGCTAGATAAAAA               TATTTA TGA CAAATA               ATATTTTGGTTAAGT  67 82
        yfbR 4232716 .. 4232730 -  -8.5  -4.11216   GCGTGACGCCTAAAA               CGGGC GTCCT GCCCG               TTTTCCTTGCCTATA  79 82
        ackA 4226165 .. 4226178 -  -6.7  -2.73681   CATGCACCCGAATCA               CTGAC CTGA GTCAG                CTCATCGGGATTTAT  56 94
         pta 4223766 .. 4223784 - -11.7  -5.11063   AGCACCCAACAAAAA             CGCCAGC ACAAG GCTGGCG             TTTACTTTGAGCAAC 100 53
CH54_RS19215 NONE
CH54_RS19210 NONE
CH54_RS19205 4220358 .. 4220373 - -10.4  -5.28778   ATCAGCCATAAAAAA              GCCCCT TTTC AGGGGC               TTTTTACGTTTATCT 100 61
CH54_RS19185 4216699 .. 4216710 -  -3.6  -3.97307   GTCATTGAAGAAGAA                GGCC CGCC AGCC                 GAGCTTTTTGGTAAC  58 137
CH54_RS19105 4200933 .. 4200966 -  -6.8  -3.19921   AGAGAATGTGACTAA     TGAGATAGTGGC GCAGAATAAT GCCGCTATCTCA      CCTTGATAATTTATT  60 36
CH54_RS19095 4198095 .. 4198109 -  -4.2  -3.85817   ACTGCCGGTGATAAA               TGACCC ACA AGGCCA               ATTATCAGCCCAGTG  57 197
         flk 4192811 .. 4192824 -  -2.4  -3.29144   TTACCCGGCTTACAA               TCAC TCTTCG GTGA                AATCAAAACATTATC  45 380
CH54_RS19050 NONE
CH54_RS19045 NONE
CH54_RS19040 NONE
CH54_RS19035 4185506 .. 4185519 -  -3.1  -3.47345   AATTTGACAGGATAA               TAGTG CTAT CACCA                AGGTAAGGTTGTTTT  50 135
CH54_RS19030 4184009 .. 4184040 -   -16  -2.64973   ATTAACGCTATATTA      CTCAGGATAACCGC CGGA GCGGCTATCCTGAA       TATGGACTAGAACCA 100 32
CH54_RS19025 4183131 .. 4183141 -  -5.4  -2.85545   CGGGCAAGAATAGGA                 TCAG TGG CTGA                 TGTCCTTGGCCCGCG  52 63
        mnmC 4178143 .. 4178156 -  -5.3  -2.73681   CATGCACCCGAATCA               CTTAC CGGT GTAAG                CTCATCGGGGTTTGT  49 126
        smrB 4171774 .. 4171785 -  -7.2  -3.45118   TGATGCCAGAATTAA                CCCC GGGT GGGG                 ATGCCGCTTTTGTTT  64 395
        fadL 4165259 .. 4165272 -  -9.5  -5.79595   CCTGAAAATAAAAAA               GCGCC GTAA GGCGC                TTTTTTTGTGGGCAA 100 62
CH54_RS18895 4156014 .. 4156028 -    -5  -2.64735   ACCTAAAACCAATAG               CTCAGA GAG TCTGAA               TCGGTGCTGTTACTT  49 35
CH54_RS18890 4155590 .. 4155604 -  -2.1  -3.63868   GCTGGAAAAGAAAAG               CTGCT ATCTA AACAG               GCCAAGAAAGTCAGC  49 211
CH54_RS18865 NONE
CH54_RS18860 4150372 .. 4150388 -  -2.2    -3.315   AGTTGTAGAGAAAAT              TGCTGT GTTCA ACGGCA              GAGAACCTTGCGCTG  45 456
CH54_RS18630 4117839 .. 4117854 -  -8.2  -5.74288   ATAAATAATAAAAAA              GGCCGC CTAA GCGACC               TTGATGACCCACCCC 100 60
CH54_RS18625 4116684 .. 4116701 -  -9.8  -5.29782   TACAGGCACAAAAAA             CCCGGC AGCGGG GCCGGG              TTGGTTTGGCTTTAT 100 47
CH54_RS18615 4115157 .. 4115171 -  -4.3  -2.83908   AAATTTAGCACCAGA               CATGT ATAGA ACATG               CCGTATGTTCATGAT  48 467
CH54_RS18595 NONE
CH54_RS18590 NONE
CH54_RS18585 4112785 .. 4112803 -   -11  -2.83701   CAAATAGTTAGTAGA             GCATCCCG ATG CGGGATAC             CCTGCAATGGCGTAT  77 322
CH54_RS18580 NONE
CH54_RS18575 NONE
CH54_RS18570 NONE
CH54_RS18565 4110539 .. 4110552 -  -3.8  -2.99471   GTATTTTCAGACATA               GCTG TTTCCT CAGC                AGATTGACTGCCGGT  47 55
CH54_RS20345 NONE
CH54_RS18555 NONE
CH54_RS18550 NONE
CH54_RS18545 NONE
CH54_RS18540 NONE
CH54_RS21940 NONE
CH54_RS18535 NONE
CH54_RS18530 4107071 .. 4107081 -  -8.2  -3.37975   ACTGACCATTCAGAA                 CGCC AAT GGCG                 AAAAGAAGCCAAGCC  66 297
CH54_RS18520 4105418 .. 4105434 -  -6.5  -4.19506   ACCGTAAGGCGAAAA              GCCATTG ACT CAAAGGC              GACTGCCCGTATAAT  71 203
        folD NONE
        ybcJ 4104086 .. 4104116 -  -9.1   -5.6473   ATAAGATTAAAAAAA      TTGCGGTT-CTGGT GTTG ACCAGTAACCGCAT       TTTTTTGCCCATATA 100 104
        ppiB NONE
CH54_RS18490 NONE
        purE NONE
        purK 4099366 .. 4099389 - -11.6  -3.97674   GGATTAGTGAAATAA          CGCGGGCGGC ATAA ACTGCCCGCG           CTTCAGTTATAACTT  90 32
        tesA NONE
CH54_RS18460 NONE
CH54_RS18455 4093797 .. 4093819 - -14.8  -4.81212   CGGAGCAGAATAAAA           CAGCGCGGGA TGG CCCCGCGCCG           TAGCAAATAATGGCA 100 76
CH54_RS18450 NONE
CH54_RS18445 4091825 .. 4091837 -  -3.3  -5.75945   ATGTGGCAAAAAAAA                CCGGC TTA ACCAG                CAAAGCCATCCGTTT  91 496
        copA 4088688 .. 4088714 - -10.2  -3.71917   ATCCTAAACGCTAAA         TGGCGCACAAGA AAG TGTTGTGCACCA         TTAGGTTATATCCGT  80 151
CH54_RS18430 4087661 .. 4087671 -  -5.4  -2.88358   AAATCAGCATAATGA                 TCCA TTT TGGA                 ATGATACAGGGCGAA  52 186
        ybaK 4087031 .. 4087063 -  -9.1  -3.38581   AGTAACCTGTAAATA      CAGAAGCCTTCAGAC AGA GATTGGAGGCTTCTG      GTCACAACTTTTAGT  72 42
CH54_RS22230 4085217 .. 4085231 -  -2.8  -3.09202   ATATATATTCCAATA               TCCTGA AAT TCAGCA               TGCATTATTACATTA  43 38
CH54_RS18415 4083823 .. 4083852 - -12.3  -2.78154   TTACACAGGGAATCA       TCCCGACTGAAAC ACAT ATTTCAATCGGGA        TTATAAGGTTATTAC  83 43
CH54_RS18410 4081870 .. 4081925 - -38.2   -2.9006   AATCTATTGGATAGA GCACATCAACTATAAATAGGGCCAGC ATAT GCTGGCCCTATTTATAGTTGATGTGC TAACACAGTAATACT 100 42
CH54_RS18315 4060088 .. 4060099 -  -4.4  -3.23165   CATTATAGAAAAGTA                TTCG CTAT CGAA                 ACCCTAATGATTCAA  51 57
        rsmS 4059628 .. 4059656 - -10.3  -2.87289   GATAAACTCAATAAC        TCACCTTGCAATG ATT CACAGCAAGGCGA        TATGTGCTCGTATCG  73 68
        acrA NONE
        acrB 4050354 .. 4050379 -  -8.9   -5.4182   AATGACAAAGAAAAA         GGCCGCTGAGT TTAG ACTGGGCGGCC          TTTTTAGTACGACAT  95 60
CH54_RS18280 NONE
CH54_RS18275 NONE
CH54_RS18270 NONE
CH54_RS18265 4046724 .. 4046740 -  -4.3  -2.64091   AACGATTCCATATCA              CGACCCC ATC GAGGCCA              ATAGGCCCCCGGCTA  47 113
CH54_RS18260 4045382 .. 4045401 - -12.2  -6.32017   AATAAATAAAAAAAA            CCGCAAAC CGAA GTTTGCGG             ACTTTTTTAAAGTGG 100 60
CH54_RS18255 4044999 .. 4045013 -  -3.6  -2.59668   CAATACTTGCATAAT               TAACTC TCA GAATTA               GCTGTTTTTTGGCGT  43 23
        ykgO 4044801 .. 4044833 -   -15  -3.57406   CCTTTATGACAAATA      GAAAAGCCCCGTTG GGCAG CAACGGGGCTTTTG      ACTGCAACATATTCA 100 44
CH54_RS18230 NONE
        tomB 4040561 .. 4040571 -    -4  -3.89226   GATATAAAAATAATA                 TAGT GAA ACTA                 TTCTTTAAGTTTTCA  57 30
        ymoA 4040273 .. 4040291 - -11.8  -3.06796   GCTGACTGCATTGAA             GCCGATAA CAA TTATCGGC             TCAACGTTGTGTGTC  82 60
CH54_RS18215 4038971 .. 4038982 -  -2.2  -3.75153   CTGTTGCAATTGAAA                CTGC ACCT ACAG                 CCACAACGACCGGTA  50 101
        tesB 4037334 .. 4037355 - -15.9   -3.1478   ATGATGGTAGCAACA           GGGGCGATG GCGA CATCGCCCC            TTATTATTGATGGCG 100 42
CH54_RS18175 4029898 .. 4029915 -  -8.4  -3.53012   TTTTTCTTCCTCAAA             GGGCCT ATATTA AGGCCC              TTTTATCAATGAGTT  72 39
CH54_RS18165 NONE
        queC 4025961 .. 4025978 -  -2.7  -3.53761   GAAGCGCGTTGGAAA             TGGCT TGAAGGGG AGCCA              GCCGCGCAATGGATG  49 417
CH54_RS18110 4014057 .. 4014091 -    -5   -3.0641   AAAAAGGTTCGAATA     GCGATTGGGCATGT GAGACCT ACATGCTCAACCCC     ATGAGCGGGGCAGAG  51 83
        ampG 4012550 .. 4012567 - -11.3  -5.71983   GTAACCATAAAAAAA             GCCGGTA TAAA TACCGGC              TTTTGTCATTTAATG 100 48
CH54_RS18100 4011507 .. 4011537 - -14.9  -3.32293   GTAAATTTAAATATA      TTCCGGAGC-GCTA TAAA TAGCTGCTCCGGAA       TCATTTAGTTAGAAG 100 34
        cyoA NONE
        cyoB NONE
CH54_RS18085 NONE
CH54_RS18080 4007288 .. 4007302 -  -2.8  -3.05596   CAGCTCTTCAGTCAA               CCATCA TAT TGATGT               TGAGGTTGTACATAA  43 3
        cyoE 4006336 .. 4006356 - -11.2   -5.4182   AAGCAGAAATAAAAA            GTGGCTGT AGGTA ACAGCCAC            TTTCAGATCAACAGG 100 48
CH54_RS18070 4004811 .. 4004834 - -10.4  -3.67792   TGATACTTAGCTAAA          TCAGGTACAA AATT CTGTACCTGA           TTTGGGTTATATCGC  80 32
        panE NONE
        yajL 4002435 .. 4002448 -  -5.3    -3.767   TAGGCAGCCAGCAAA               CTCAT CCCG ATGAG                CTTACTCAGGTAAGT  58 79
        xseB NONE
        ispA 3999254 .. 3999270 -  -6.5  -2.78738   TCAAAAGTTTAAGTA              GGCACTC ACG GACTGCC              AGTATATTTCTAATT  55 35
         dxs 3997335 .. 3997356 - -13.1  -4.35885   AGCCATTAGAACAAA           GGCATAACC GAGT GGTTATGCC            TTAATTATTATCACT 100 36
CH54_RS17975 3984801 .. 3984813 -  -2.6  -2.62983   GTGACGTCGATAGTA                CCGC CGGTT ACGG                CTACGTCACCTGTTC  41 68
CH54_RS17965 NONE
CH54_RS17960 3981756 .. 3981779 - -14.6  -3.80573   GTTATTAGGATGAAA          GCGCAGTCTG TTAT CAGACCGCGC           TTATATCACTCAAAA 100 59
CH54_RS17950 3979689 .. 3979699 -    -4  -2.79098   GGGATGGATTAACCA                 TTTG TCT CAAA                 AGTATCGGCACAGCA  46 205
CH54_RS17945 3978987 .. 3979010 - -15.4  -5.25699   AGCAGATAAGAAAAA          GCCAGTCAGT GTGA ACTGACTGGC           TTGATACCCCCCGAG 100 67
         ggt 3976779 .. 3976804 -  -7.5  -2.94598   AATAAACCAGTAAAT         TCCCCCGTCGA TATA TTGATGGGGGA          TGAATAGCATTGGTA  61 52
        sbcD NONE
CH54_RS17895 NONE
        rdgC 3959859 .. 3959876 -  -4.9  -2.80575   AAAAGGGCGAGTACA             CTTTCAGC ACA GC-GAAAG             CGGAAGAAATGACAG  47 259
CH54_RS17850 3954570 .. 3954590 -  -6.8  -3.48924   TGATTGGTCAGAGAA            CAGCAGGC GCAAT GCCTGATG            AATTGTTCATCCTAT  64 37
CH54_RS17820 3939821 .. 3939835 -  -4.2  -4.44046   CTTATCTGAAAGAAA               CTATCG GGA CGTTAG               ATGTAAAAACTATTG  65 329
CH54_RS17770 NONE
CH54_RS17765 NONE
CH54_RS17760 NONE
CH54_RS17755 NONE
CH54_RS17750 NONE
CH54_RS17745 NONE
CH54_RS17740 NONE
CH54_RS17735 NONE
CH54_RS17730 NONE
CH54_RS17725 NONE
        wecB NONE
CH54_RS17715 3917611 .. 3917622 -    -3  -3.42699   AGAAAACTAAATATA                TTCT TCTC AGAA                 AATCATGAGGTTATT  46 124
   wzz(fepE) 3916277 .. 3916298 -  -3.9  -2.65815   TCGAGATTGATATCA           GATGATT-AT TAT ATAAATCATC           TGGTTATATTGTTAG  45 154
        pepD 3914724 .. 3914744 -  -8.1   -5.5112   CTGACGAATAAAAAA            CGGCGGGCC TAA GTGCCGCCG            TTAATCATATAAAAC  93 54
CH54_RS17675 3908873 .. 3908901 -  -8.9  -4.96848   TTCTGTATATAAAAA        TCCCCGTTCAA TATGGAG TTGAGCGGGGA        TTTTTGTTTTATATA  90 103
        dpaA 3900373 .. 3900394 -  -8.7  -3.91798   TAACCGGTAATGAAA           CCTGGCACA AAAT TGCACCAGG            TGAGTTTGCATTATT  73 36
        fadE 3896183 .. 3896212 - -18.1   -4.3898   ATCATTGTCACAAAA       TAAAGCCCTGCAT AATA ATGCAGGGCTTTA        TGTTAAGAGTTAGAC 100 66
        mtnA 3893363 .. 3893373 -  -6.8  -3.27653   ATTTTTATCAGAACA                 CACC CAC GGTG                 AAGATGAAGTGCGTT  59 357
CH54_RS17585 3890340 .. 3890350 -  -2.4   -3.5365   TTAAAGTTGACACAA                 TCGC TCC GCGG                 CGGCGTCCAGCGTGG  47 0
CH54_RS17580 NONE
CH54_RS17575 3888198 .. 3888231 -  -7.7  -2.93393   GGCTACGGGATAAAG     TTAAGTCACATTACCA GAG TGGTAAT-TGTCTTAA     TACCCTATAACCCAA  63 83
CH54_RS17570 NONE
        ygaH NONE
        mprA 3886240 .. 3886257 - -11.3  -2.52516   TCTTCCAGTACTAAT             GAGCCTC ATCA GAGGCTC              TGCTGGCAGGCCAGC  79 133
        emrA NONE
        emrB 3883179 .. 3883203 - -12.9  -3.69354   GTTGATAACCTTAAA          GGGCGCTGA TGATAAG TCAGCGCCC          TTTTTTTATTAGTCA  95 51
        trxC 3881166 .. 3881197 -    -8  -5.86976   CCATAAAAGAAAAAA      CAACACTCCAACAG AAAA CTGTCAGGGTGCTG       TTTTGGATTATAACC 100 96
CH54_RS17535 3880228 .. 3880239 -  -4.4  -2.70932   TTTGTTCCCGAATCA                CTGA CTGG TCAG                 TGACCTTAAAATAAA  47 124
CH54_RS17530 NONE
        pssA 3875900 .. 3875917 -  -8.4  -4.60797   GCTGGAGACAGAAAA             CCCGGT AATAGA ACCGGG              TTTTTTGTTTGAATT  87 41
CH54_RS17520 3875417 .. 3875451 -  -8.6  -5.45802   TGTGGAAAAGAAAAA     GAGAAAAGCCTTCTGC TGC GCAGAGGGCTTTTTTT     ATGTATCCACTTAAA  95 102
        metN NONE
CH54_RS17480 3867142 .. 3867155 -  -5.3  -2.73681   CACTCACCTGAATCA               CTTAC TTGA GTAAG                CTCATCAGGATTCAT  49 96
CH54_RS17475 3866114 .. 3866137 - -16.8  -3.97674   CTATTATGCAAATAA          CAAGACGGGC TATA GCCCGTCTTG           CAATATATTTAGCAA 100 104
        rcsF 3865646 .. 3865657 -    -3  -2.93822   TAAAGGAGAAAACAC                TCAT TTTG ATGA                 AACATTCAGTGCAGA  43 14
        tsaA NONE
        proS 3863070 .. 3863097 -  -6.3   -5.7946   GCTGCAATAAAAAAA        CCGCCAG-CTGT TATTC ACATTCTGGCGG        CTTTCTATTTAGAGC 100 44
CH54_RS17440 NONE
         rof 3860594 .. 3860615 - -15.9  -4.27316   GTCCTGAATGCAAAA           CGGGCCACT TTTC AGTGGCCCG            TCGTTAAAGGTGCAG 100 43
CH54_RS17415 3856867 .. 3856889 -  -9.1  -4.18058   AATGATATTTGAAAA           TCCGGTGCT GAGTT AGCGCCGGA           TTTTTTATATTTAAT  85 426
         map 3835586 .. 3835601 - -11.8  -5.31456   GCAACCCATAAAAAA              GCCGGC GGAT GCCGGC               TTGTCATATTACTCG 100 34
        glnD 3832859 .. 3832870 -    -3  -4.81685   ATTAATGACTAAAAA                GATA TTTG TATC                 ACAGTTTATCGTTCG  65 24
        dapD 3831964 .. 3831984 -  -8.3  -5.55698   CACAAGGCAAAAAAA            TAGCGGG TAATTAG CCCGCTA            TCTTCAATCTTAGTC 100 35
CH54_RS17305 3831347 .. 3831379 -    -5  -3.76224   TCTCTATCCATGAAA      TTGCAGGTGA GGGCGATGTTTAT TCACCTGCAA      CTCCAGTGACTTTAG  58 59
        queF NONE
        ppnN 3825821 .. 3825875 -   -11   -3.6682   CTGCAGGGATTCAAA TAACTTTCA--GGTAGCGCCAGCCGG GGGAT CCTGCTCGCACTACCGGTGAAAGTTA CTGATTTTTTAACTA  83 34
         xni 3824950 .. 3824965 - -11.8  -3.35679   CTGTCTTACGCACAA              GGGGCC AATT GGCCCC               TTTGTTTTTATGCTG  86 44
        csdA NONE
        csdE 3819855 .. 3819871 -  -9.4  -2.75536   AAATGATGGCGAAAG              CTGCCC GTCAG GGGCAG              TCACTATCATGACAC  71 32
CH54_RS17225 3817412 .. 3817426 -  -3.6  -2.55015   ATTCTACCTAATTCA               TCTTAA CTT TCAAGA               CTATCGGACAATATT  42 67
CH54_RS17220 NONE
CH54_RS17215 3817122 .. 3817135 -  -8.1  -6.02919   CCAGAAACAAAAAAA               CACCC TTGA GGGTG                TCTTATAGTGATATG 100 55
        argA 3814043 .. 3814064 - -14.5  -2.79831   TTGACCTGAAAATAT           TGAAGGGGC GAAC GCCCCTTCA            GATTACAAATCTGCC  93 28
        mutH 3793580 .. 3793601 - -13.1  -3.15544   GCTCATCGGGATTAA           TGAGCCTCA TCCT TGAGGCTCA            CCCTACGGCTAGCAT  91 157
CH54_RS17130 3792687 .. 3792710 - -12.4  -3.63589   GAAAATAGTGGGAAA          CGGGGGCGACG AAT CG-CACCCCCG          ATATTTTTATTTCGT  90 32
CH54_RS17125 3791479 .. 3791506 -  -5.4  -3.14564   TTACTTTGTCAGCAA        TCTGAAGGCCGC CTAA GCGGCCTTTTGG         CGATTGAATCGAGCA  54 45
        galR 3783568 .. 3783591 -  -7.3  -3.27704   AGTCTTGAAATTGAA          CCCGGCCGC TTCCTG GTGGCCGAG           TCCGGTGTGCTAATC  62 479
CH54_RS17095 3781170 .. 3781190 -  -6.2  -3.19246   CCAATTCTAACTGAA           GTGACTCAG GTTT CTGAG-CAC            GGTATCAGTTGGACA  55 490
CH54_RS17080 NONE
CH54_RS17075 3777421 .. 3777450 -  -9.3  -2.63991   TTCAACTCAATTAAT       CTGTGGCTCGC TTTTGTTT GCCAGCCACAG        TACAACCTCCTCACC  67 69
        gspS 3774532 .. 3774552 -  -2.5   -4.4846   TAACCGAAGAATAAA            TCCTCGATA CAT TATCGTCGA            ACTGTTGACTACATT  61 523
CH54_RS16980 3761334 .. 3761360 -  -4.5  -5.09762   GCTCAAGAAAGAAAA        CGACCAA-TTGC GCAG GCAACTTGACCG         TTTTGTTCAAACATC  76 284
CH54_RS16960 NONE
CH54_RS16955 3754658 .. 3754680 - -14.2  -4.53398   TAATATGAAAAATAA           GCGGGTTCAA GAA TCGAACCCGC           GGCTAATGACTGGCA 100 58
CH54_RS16945 3753510 .. 3753535 -  -4.8  -3.63627   TCTCTACACTCCAAA         TTCTATACAG TGCTGG CCGCATAGAA          AACTAGACCAACAGA  58 101
CH54_RS16935 3751243 .. 3751254 -  -5.8  -4.03978   AATTCTGGATAGAAA                TGGC GTTA GCCA                 TTTTGGCAATTTATC  65 155
CH54_RS21840 3750564 .. 3750577 -  -3.1  -5.20222   AGCAAATAAATAAAA               GGAAC CTTT ATTCC                GGTTGTTTTAGGTCA  76 139
CH54_RS16920 3750050 .. 3750063 -  -5.2  -5.00616   TTGTGGTGCAAAAAA               CGGC TTATAT GCCG                TGGAGAGAAAAGGGC  78 238
CH54_RS16910 3747094 .. 3747128 - -12.4  -3.25307   GAACACATATGAATA     CTGACTGAACAGTT ATTAGTA AACTATTCAGTCAG     TTTTTATCTTTGTAT  85 97
CH54_RS16880 3742903 .. 3742918 -    -9  -3.60792   TTCTTAATTTTTAAA              GGCATC TCAC GATGCC               TTTTTGCATTTAGAG  74 42
CH54_RS16875 NONE
CH54_RS16870 3740850 .. 3740874 -  -5.6  -3.71873   GCATTGACAGCTAAA          GCGCTGTCCA TGGCC TGGGAAGCGC          GAGGAAAGCCGGCTA  59 391
CH54_RS16850 3737859 .. 3737871 -  -9.1  -2.53164   GTATGTATGACTAAG                CCCCT TTG AGGGG                GCTAAATGCAAGGGT  67 64
        fldB 3729933 .. 3729951 - -11.7   -2.5655   CGCAGGGATAGCAAG             CGGGCAC AATAA GTGCCCG             TTTGTCACATCCGTG  81 50
        ygfZ NONE
CH54_RS16775 3722600 .. 3722614 -  -3.6  -4.57569   TGACCGGGTGAAAAA               TTCACT GCC AATGAA               ACGCGGCGGACATCC  66 144
        zapA NONE
        ssrS 3711578 .. 3711594 -  -5.1   -4.3767   TTACACGATAAGAAA              GGGATCT CCG AGATGCC              GCCGCAGGCTGTAAC  68 9
CH54_RS16725 3710833 .. 3710857 -  -8.6  -3.82218   ACTGATATGACTAAA          CACCCGCTAT GTATA ATATCGGGTG          TTTTTTTATGTTGAA  77 50
CH54_RS16710 3707056 .. 3707074 -  -5.3  -3.65827   GAAGCGGTATTGAAA            GGC-TACC GTGC GGTACGCC             AGGTTCAAGTGACAC  59 428
CH54_RS16690 3703668 .. 3703691 - -12.6  -3.88232   TGGCGGATATAAGAA          GGACTCATAA TTTT TTATGAGTCC           TTTTTTACGGCACTT  93 166
CH54_RS16665 3695996 .. 3696015 - -12.2    -3.137   ATTAATATCACTTAA            GGGCAAAC TCAG GTTTGCCC             TTTTTGTTTGCGCGA  83 484
        metK 3691528 .. 3691555 - -12.8  -2.63596   TCTTATCTGACATTA        GCGGAGAATATC TTGC GACACTCTCCGC         TAATTTTAACGCGAA  81 175
CH54_RS16620 3688481 .. 3688496 -  -4.8  -3.28712   CTTGCTGTTTTATAA              CAATTA ACGT TAATTG               CTAACAGCTTTTTTC  54 19
        endA NONE
        rsmE NONE
        gshB 3685773 .. 3685788 -  -6.1   -3.1149   AGTTAAGGGGAAAAC              TCCGC CAGTAT GCGGA               TAAATGCGGATAAAG  58 174
CH54_RS16600 NONE
        ruvX 3684595 .. 3684608 -  -8.1  -5.25805   AATAAATGTAAAAAA               CACCC GCGA GGGTG                TGCAATATTTTGAGC  91 166
        aguB NONE
        aguA 3682396 .. 3682415 -  -6.4  -3.02739   GTCAATTGAGATAGA            GCCGCTAAC ACC GCT-GCGGC            TTCAATTAAAAAGAG  56 166
CH54_RS16575 3680398 .. 3680419 - -13.1  -3.15544   GCTCATCGGGATTAA           TGAGCCTCA TCCT TGAGGCTCA            CCCTGCGGGCTAGCA  91 146
        proC 3679389 .. 3679399 -    -4   -3.6682   TGGTATGCAGGTAAA                 TAGA CCG TCTA                 TTTACCTACTTTATA  54 102
CH54_RS16565 NONE
        yggU NONE
CH54_RS16555 NONE
        hemW 3676459 .. 3676472 -  -5.3  -2.73364   CGCTCACCCGAATCA               CTTAC CTAA GTAAG                TTCATCGGGATTTGC  49 291
        mutY NONE
CH54_RS16520 3671652 .. 3671671 - -12.1  -2.81182   GGGAATAAATAACAG            CGGGGCC AGCATA GGCCCCG             TAATAGGTTACTGAC  81 33
        mltC 3670487 .. 3670506 - -13.6  -5.28176   TTTAGCCATAAAAAA            GGGCACAG CGCA CTGTGCCC             TTTATACCCATGACA 100 42
CH54_RS16510 3669569 .. 3669594 -   -12  -3.02649   ATCTGAGGACAGATA         GACAGCCAAT GGGAAT ATTGGCTGTC          ACTTTATCCCACTTT  82 47
CH54_RS16500 3666511 .. 3666534 -  -8.9  -4.26003   ATAACACGTAACAAA          GCCCACTTG ATTTAA CAAGTGAGC           TAATTGATTGCTAAC  85 146
CH54_RS16485 3663661 .. 3663672 -  -5.8  -3.71378   CAGTGCATATTTAAA                CCCT GGCC AGGG                 CGACTACAATGCTTG  60 347
CH54_RS16455 3657932 .. 3657942 -  -4.6  -3.84271   CCATAACAGTAATAA                 CGGC GCC ACCG                 TTTAAATCATGCCAA  59 144
CH54_RS16300 3619306 .. 3619327 - -10.1   -5.5208   CCATAATACAAAAAA           CCGCTCTCC AGTG GGAGAGTGG            CTCTGTAGTGAGAAT 100 280
CH54_RS16290 NONE
        radC NONE
CH54_RS16280 3617737 .. 3617758 -  -6.5  -2.80291   AATTACGTCAGGAGA           CGAGCGGTG GTAT CACCAGTCG            AATGTGGCGAAACCG  55 16
CH54_RS16275 NONE
CH54_RS16270 3616930 .. 3616950 -  -8.3  -4.73108   TCCATAAAAGCAAAA            CGCCAAC TCTTGTT GTTGGCG            TCGAGGAAGGGGGAT  88 65
CH54_RS16265 3615842 .. 3615861 -  -3.6  -3.79021   ACATTAAACACAGAA            TACTCCTC TATA GAGAAATA             TTGCCTTTTAAGCTA  52 201
CH54_RS16260 NONE
CH54_RS16255 3615003 .. 3615022 - -13.6  -4.43272   ATTTAAAATGCAAAA            CGGACGTC AGTA GACGTCCG             TTTATGGAATAGTGG 100 243
CH54_RS16235 3610132 .. 3610145 -  -3.8  -2.94416   CATCGCTATTATATA               CTGC GTAATT GCAG                AATATCTTCCCAAAG  47 468
CH54_RS16225 3608134 .. 3608155 - -10.9  -3.29325   CCGCTATAAGCAATA           GTGGAGTCA CCAA CGACTCCAC            GACTTATTGATTATT  80 36
CH54_RS16215 3605794 .. 3605807 -  -3.1  -4.75776   AACCCAACCTAAAAA               CTCCT GGCA AAGAG                CAAGACATCTTTTTT  67 505
CH54_RS16210 NONE
CH54_RS16205 NONE
CH54_RS16200 NONE
CH54_RS16195 3601732 .. 3601750 -  -3.1  -3.22298   GTCACTGATCAGTAA             CGACATG TCCGG CATGTAG             GTTCGGTGTCATAAT  46 460
CH54_RS16005 3556128 .. 3556175 - -13.6   -3.6761   TGGTGCCAATAAACA GGGGAGAGAATAGCGCT-ATGCT AAT AGCATTAGGGTGATTCTCTCCCC ATTTTTACTCTACTG  95 55
CH54_RS15975 NONE
         map 3548232 .. 3548250 -  -4.5  -2.86432   TGCAAGATCAGCATA             TTGCGGT TTATT ACCGCTA             AGGTACTGAGCGGCG  48 107
CH54_RS15935 3539403 .. 3539418 -  -2.5  -3.70505   CAAATGAAGGGGAAA              CGTGCC GTTGG GGC-CG              TAGCGATGCCAGTCG  50 125
CH54_RS15925 NONE
CH54_RS15920 3535531 .. 3535546 -  -2.5  -4.61482   GCGGCGAAAAAATAA              GCTGC GGCTAA ACAGC               CCATAGGGGAGGGGC  62 69
CH54_RS15885 3509460 .. 3509472 -  -4.8  -4.03611   AAAAGACTTAAAGAA                GCTG TTAGC CAGC                AATTACCGCTCGTCA  62 448
CH54_RS15815 3494867 .. 3494891 -  -7.1   -3.1136   AATGTTAATAAAGCA          GCACCCAAACA CGG CGTTTGGGCGG          CAAAAATTAGCGCGG  63 32
CH54_RS15765 NONE
CH54_RS15760 3485225 .. 3485244 -  -7.9  -2.92642   AGTATGACGGATATA            GGGGAAA TTAATC TTTCCCC             TTTGTCATATTACTT  63 13
        flgA 3474379 .. 3474400 -  -2.9   -2.6027   TCAAAACTTAACTCA           CTGCCGTTA GCCC TAACTGCTG            GCAATTCCTAGCATT  41 16
CH54_RS15690 NONE
        flgN 3473442 .. 3473474 -  -4.9  -3.71174   AATAAAGATGTGAAA     CATTCGCCCT-GGC ATAATA GCCTATAGCGAATG      TTTTTTTGGTATGAA  58 107
CH54_RS15645 NONE
        fliN NONE
        fliP NONE
        fliQ NONE
        fliR NONE
CH54_RS15620 NONE
CH54_RS15615 3459977 .. 3460016 - -21.7  -5.42131   TAAGTATATAAAAAA  TGGCCAGGGTGTCGAGCA ATGAG TG-TCGACACCCTGGCCA  TTTTTATAATGATAA 100 53
        fepB 3450109 .. 3450125 -  -5.2  -4.14543   TAAAACATCAAATAA              TTAAGG TTTAG CCTTAA              ACATCCCCTCAATCC  65 9
        entS 3445586 .. 3445597 -  -4.4  -3.19321   ATCAACCAAAACAAT                GATC CGGT GATC                 TATCACCCGCCAACT  51 28
CH54_RS21015 3444960 .. 3444977 - -12.7  -3.62478   GAACCAATCGCCAAA             GGGTGCG GGCG CGCACCC              TTGTGGAATCCCGCG  90 126
CH54_RS15535 3433314 .. 3433338 - -11.4  -5.67967   ATTAGGATAAAAAAA          CGCGCCAGTA TGGGC CACCGGCGCG          GTTGAAAATAAAAAC 100 41
CH54_RS15530 3432582 .. 3432603 -  -7.2  -3.49086   ATAGAATTAGCACAA           CACGCCGC GGGAAA GCGGCCTG            AAAGATGTGGTTAAC  66 52
CH54_RS15525 NONE
CH54_RS15520 NONE
CH54_RS15515 NONE
CH54_RS15510 3426140 .. 3426168 - -13.9  -4.92757   GTATCAATAAGAAAA        CCCTCAGTCCCGC AAG ACAGAACTGAGGG        CGATGATGATACTTG 100 48
CH54_RS15500 3424163 .. 3424182 -    -5  -3.34398   TTTCCTTGTTAAATA            TATTGGGA TTCT TCCCGATA             TTTCAATTAAGTACA  54 185
CH54_RS15495 3423871 .. 3423911 -  -9.9  -3.40403   CTCCTTTGAGGATAA  TGTCATTAAGATGGCAACT TAA AGTTTCCATCTTAATGTTA  ATAGAGTCTAAATCA  75 42
CH54_RS15490 3423381 .. 3423393 -  -2.7  -3.52554   ATTAACAAAAGAAAC                TTACG GTT CATAA                TAATCCTATATTATT  48 63
CH54_RS15485 NONE
CH54_RS15480 NONE
CH54_RS15470 NONE
CH54_RS15465 3418550 .. 3418568 -  -3.2  -2.97667   TTATGTAGTAAATCA             CTTTTCCA CCA TAGAAAAA             ATACTATTTAATTCA  45 4
CH54_RS15460 NONE
CH54_RS15455 NONE
CH54_RS15450 NONE
CH54_RS15445 NONE
        tadF NONE
CH54_RS15435 3413495 .. 3413520 - -16.2  -3.77264   CAAAATAGTCAATAA         CAGGCGCGGT GATATT ACCGCGCCTG          ATCTCAGTTTTTAGG 100 29
        metC 3410301 .. 3410331 - -11.3   -2.7535   TTGTGTAAGAGAGGA       TGAATGTGCGG AGACTTTGA CCGCACATTCA       CAAACCATAGCGCTC  80 48
CH54_RS15415 3409445 .. 3409461 - -10.8  -4.56358   GATATCGATACAAAA              CGGCGC ACTAA GCGCCG              TTTAGTTGTTCGAGC  91 49
        yqhD NONE
        dkgA 3406164 .. 3406184 - -11.1   -4.2828   CCGCAGGTAGCAAAA            CCGGCGC AAACAGA GCGCCGG            TGAATAAACCCGCTG  87 92
CH54_RS15375 NONE
CH54_RS15370 3397501 .. 3397514 -  -5.3  -2.73681   CACTTACCCGAATCA               CTTAC TTGA GTAAG                CTCATCGGGATGCGT  49 88
        tolC 3390092 .. 3390118 - -13.7  -5.65927   GAGGGAAATAAAAAA         CCGGGCACAGC TTGAT GCCGTACCCGG         TGAGTTCACATTCGT 100 46
CH54_RS15330 NONE
CH54_RS15325 3387529 .. 3387541 -  -7.7  -3.28041   AACCTGAATTATCAA                GGTGA TAA TCACC                CATTGATCAATTTTA  64 522
CH54_RS15310 3385235 .. 3385252 - -14.1  -4.84761   ATACCGCTATAAAAA             GGGCGCC ACAC GGCGCCC              TAATGATAACTGGCG 100 54
CH54_RS15285 3376981 .. 3377004 -    -6  -4.04394   TGGAAACTAATTAAA          CAGGCTACCC TGGC AGATAGCCTA           ATTGTTCATTCTGGA  69 55
CH54_RS15280 3375340 .. 3375359 -  -7.8  -5.10767   CACGGAATATAAAAA            CGCCCTGA ATTT TCAGGGCT             TTTTTATTTATATCT  88 51
        plsY 3372909 .. 3372923 -  -4.2  -2.61264   TTTTGCACCGATAAT               GGCG CGATGAT CGCC               TATGCTGGGTTGATC  44 298
        rpsU 3371316 .. 3371343 - -13.4  -3.94823   CATAAACGAGAACAA        GCCGCGCATTCC TTTC GGAAGGCACGGC         CTTCGTATGCAACTA 100 99
        dnaG NONE
        rpoD 3367484 .. 3367511 - -12.8  -4.74504   AGTTTAAGCCAAAAA        GAAAAACCCCGG CATG CCGGGGTTTTTG         TGTGCTTGTCACTGC 100 50
CH54_RS15240 3367216 .. 3367243 - -11.4  -5.41941   CAAACCAAATAAAAA        GGAGTCAGACGA TTTC TCATCTAACTCC         TTGTTTTATTTGGTG 100 36
        murQ NONE
        murP 3358924 .. 3358944 -   -14  -2.94912   TTTGTAACGGATAGA            GGCCCTGC GGTGT GCAGGGCC            AAGTCAATCATCGCA  93 42
CH54_RS15190 3353193 .. 3353205 -  -5.5  -3.28712   CTGGTTGCCGTATAA                GCCGA TAA TCAGC                CCACTAATAATAAAT  56 373
CH54_RS15180 3350795 .. 3350808 -  -6.7  -2.73681   CACTCACCCGAATCA               CTGAC TTGA GTCAG                CTCATCGGGATTTGT  56 164
CH54_RS22135 3346399 .. 3346439 -    -7  -2.69528   TTAAACTGAAAGTTA CCCATATCGGCATCACTGT GACT ACATTT-TGCCGATATGGA  TATTTTCAATTTAAT  56 68
CH54_RS15165 3345686 .. 3345708 -    -4  -3.25666   GAAAAACACATTGAA           CCACCCCGCC ATT AACGGATTGG           TTTTTATAGCGAAAT  48 55
CH54_RS15160 3344372 .. 3344397 - -11.1  -5.45802   CTCGTAAAACAAAAA         CGGCCAACGTC GGAA GACGCCAGCCG          CTATGTCTGAGCTGC 100 281
CH54_RS15155 3343315 .. 3343337 -   -12  -4.10781   AATAAGCGAGATAAA           TGCGGGGC TATAACT GCCCCGCA           TAATATATTGTGTCG  91 50
        sstT 3341566 .. 3341585 -  -8.5  -4.46854   TGATTCAATAAGAAA            CGGGGGC TAAATT GCCCCCA             TCCCCTTTAGGTTGA  85 44
CH54_RS15125 3334531 .. 3334551 - -11.1  -4.82901   GCTCGGGGATAAAAA            GCCCGGCAA ATA TCACCGGGC            TGATGGTGTCTCTCG  93 55
        exuR 3333405 .. 3333429 -  -7.1  -2.56747   TACTGACTACAACAT          CGCATGAAGAG TGC CTCTTCGTGCT          GGAAATCACCGATAT  59 120
CH54_RS15115 3332655 .. 3332668 -  -3.1  -4.06001   GATAAAGGAACCAAA               GCAAA CCAA TTCGC                TGATATCTAAAGGTA  56 90
CH54_RS15110 NONE
        mzrA 3331422 .. 3331465 -  -7.4  -2.84671   TAAATAGGGAATAAC GGAGAGCT-GATGACGGGGAG ATG CTCCCCGTCATGTAGATTACC CTACATTTTGTAGGT  60 21
CH54_RS15100 NONE
CH54_RS15095 NONE
CH54_RS15090 NONE
CH54_RS15085 3329679 .. 3329724 - -20.8  -2.61943   AAAAAACTGAAGTGA CAGAATATAAAAGCCCGCCT ATGGGA AGGTGGGCTTTTATATTCTG AGTTGATCAAACATA 100 78
CH54_RS15080 3329024 .. 3329050 - -13.1  -4.83169   ACTTCTCCATAAAAA        CG-CGCCCTATC AAAT GATAGGGCGTCG         TTAATTAAAATAGCA 100 62
CH54_RS15075 3327727 .. 3327738 -  -5.8  -3.86015   CAGTTGTTGGATAAA                CAGC AACG GCTG                 ACGGTCAGCACCATT  64 303
CH54_RS15065 3325291 .. 3325308 -  -8.3  -4.15044   CGCTCTCCTAATAAA             GAGGCGG ATGC CCGCCGC              TTAGGTGCGCATCAC  77 522
CH54_RS15040 3321230 .. 3321247 -  -2.5  -5.01845   TACAATAAGCAAAAA             GCGCTCC ACTG GGGGCGA              TATTTACATTTTTAA  70 57
CH54_RS15035 3320611 .. 3320629 -  -3.8  -4.07885   TATGTGGTTGGAAAA             GGGTTAAC GTG ATAAACCC             CATGTTTTGGTTATT  59 52
CH54_RS15030 NONE
CH54_RS15025 NONE
CH54_RS15020 3317532 .. 3317547 - -11.8  -4.40358   ACTCATTCCATAAAA              CCCCGC TTCG GCGGGG               TTTTTGTTTCTGTGA  95 77
CH54_RS15015 NONE
CH54_RS15010 NONE
CH54_RS15005 3314907 .. 3314926 - -13.6  -3.71873   GCAGTTAGATTCAAA            GTTGGGGC TTAG GCCCCAAC             TTCCTCTTAGAACAC  95 327
CH54_RS14995 3312707 .. 3312719 -  -2.7  -4.38712   CTGAGGGGGACAAAA                CCAAA CGT TTTGA                TGGTTCCAGACTCTT  62 309
CH54_RS14985 NONE
CH54_RS14980 3310773 .. 3310787 - -11.4  -4.61147   CAAGAGTACAGAAAA               GGGAGC ATG GCTCCC               TTAGACTATTTACAG  93 35
CH54_RS14960 3305325 .. 3305338 -  -5.3  -2.73681   CATTTACCCGAATCA               CTTAC TTGA GTAAG                CTCATCGGGGTTCAC  49 137
CH54_RS14955 3304542 .. 3304555 -  -3.9  -3.32317   ACCGGAGAAAAATCA               TCAAT CCGC ATTGA                AGGCGTTTGGCAGCC  50 12
        diaA NONE
        dolP 3303130 .. 3303153 - -12.5  -4.75472   GTTAGATTAAGAAAA          CGGGCTTAG ATTGCG CTAAGCCCG           TATCAGTTTGATTCT 100 57
        gltB NONE
CH54_RS14915 3291322 .. 3291341 -   -15  -5.20606   AAATAGCAATAAAAA            GGGGCTGG ATAA CCAGCCCC             TGATTTCTTTGAGTC 100 51
CH54_RS14910 3290578 .. 3290607 - -16.5  -2.67803   TCTCGAGCAAATGTA       TTATCAGGGCGGC TTTG GCCGCCCTGATTA        TTTCTGCCAATTATA 100 57
        zapG 3285807 .. 3285841 - -13.5  -2.82005   TATAGAAGTGTAAAT     GTGCTGACCGCGGCG ATGTG CGCCGCAGTCAGCTT     GATATGCCCGTCATA  91 242
        degQ NONE
        degS 3282961 .. 3282990 -  -8.6  -5.24129   CCGCCCTATAAAAAA       TGCCAGCC-GGTG AGTGA CATCAGGCTGGCA       TTTTTTTGCGATTTT  93 78
CH54_RS14830 NONE
        kdsD NONE
        kdsC NONE
        lptC NONE
        lptA NONE
        lptB NONE
        rpoN 3271670 .. 3271686 -  -4.3  -3.60627   TCAGTTCAGGTCAAA              CCAACTG TTT CCGCTGG              TTTGACGGCGGGATG  54 4
         hpf NONE
        ptsN 3270639 .. 3270673 -  -2.7  -2.68823   CTCCCTCTATAGAAC     CCTATATTCCCGGCC ACACA AGCCGGGCATAGCGA     ATAAAACGGATGTTT  41 50
        rapZ NONE
         npr 3269170 .. 3269195 - -16.2  -2.52543   AGCGGCCTCAACCGA         GCAGGAGGGC AGGCCG GCCCTCCTGC          ACCTGCGGCTTGCGC 100 322
        pyrB NONE
        pyrI 3267104 .. 3267139 -   -15  -2.74022   ATCAAATATCATAAT    TAATTATCCCCATCAT TATA AAGATGGGGATAATTA     CAGCAACCCGCTTGC  95 43
        ridA 3266649 .. 3266668 -  -9.2   -3.6806   ATATACCCATGCAAA            CGGCGGGT ATTC ACCCGCTG             TGACGCAATGACATC  76 45
        mgtA 3258557 .. 3258585 -  -3.8  -4.08216   GGATGCCCGCGAAAA       GCGCGCTTGAGCA TGGA TGCG-AATCGCGC        TGGCTCGTTAGCCCG  59 230
         rnk 3248354 .. 3248378 -  -8.5  -3.42395   CTGATCAGGGAAAGA          GGGTAATGGCC TTA GGTCGTTACCC          CATTACATAAATTAG  70 37
CH54_RS14675 3245559 .. 3245609 -  -6.1  -2.88579   GTAACGGGCGAGATA GCTTTACCGGTAGAGATTGAATT TATTC ATTTCAATCACCGCCGGAAACGC CGTTTTGGGGCAATA  52 136
        aaeR 3238457 .. 3238471 -  -7.1  -3.24017   AACTGGATAATTTAA               CCGTG GGTGG CACGG               CGTAGAGTTTTTATT  63 381
CH54_RS14590 3223840 .. 3223864 - -10.7  -4.35091   AATACGGATAATAAA          CTGGGGAGCAT GAC ACTCTCCCCAG          TGGCTGTGAATTAGC  91 36
        msrP 3222672 .. 3222685 -  -2.4  -3.54459   TTAATTTGCCGTAAA               CTGA GCCGCA TCAG                AAATTCTCCCGCAGA  47 22
        msrQ 3222007 .. 3222017 -    -4  -3.17941   ATGATATCGTAGCAA                 TTAG CAG CTAA                 ATACTGGTCTTATCA  48 91
        aroQ NONE
        accB 3220911 .. 3220921 -  -3.2  -3.17212   TTACGATTTTATCAA                 GCAT GGA ACGC                 CTCGTTATTCGATGA  46 30
        accC 3219509 .. 3219527 - -14.6  -5.56372   AAATGAAAAGAAAAA             GGCCGGTA ATT TACCGGCC             CTGATATAAAAGGTA 100 63
CH54_RS14560 NONE
        panF NONE
        prmA 3216551 .. 3216583 - -11.4  -2.73124   TGCGACTCTGCAAAT      TTGGCGTTACAACA GCGAG TGTTGCAACGCCTA      TAACATGGATAATCA  79 59
        dusB NONE
         fis 3214836 .. 3214859 - -10.2   -5.4833   TCACCTAACAAAAAA          GGCGCGCTCC GTGT GGAGTACGCC           TTTTTAAACAACAAC 100 55
CH54_RS14530 3212540 .. 3212561 -   -13  -3.61268   TATTCAAGCGCTAAA           TGCCGGGG TGAATC CCCCGGCA            TTTGAGTTTAACGAG  95 33
        cspA NONE
        cspG 3211228 .. 3211255 - -12.8  -2.63596   TCTTATCTGACATTA        GCGGAGAATATC TTGC GACACTCTCCGC         TAATTTTAACGCGAA  83 268
CH54_RS14510 3208110 .. 3208120 -  -2.6  -3.14564   TGAGCTTTCCATCAA                 TTAT ATC ATAA                 TCACGGTAAATGATA  44 114
        lpxP 3206947 .. 3206962 -  -7.5  -5.60689   TTAGATAATAAAAAA              CCCGG TGAATG CCGGG               TTTTTCATATTTATG 100 47
CH54_RS14485 3202697 .. 3202710 -  -2.4  -2.72463   ATCGACCCTGAATTA               CTGA AAGAAG TCAG                TTCACGGGTGATTGG  39 261
CH54_RS14465 NONE
CH54_RS22225 3197830 .. 3197857 -  -6.2  -2.61681   CGGTAACCTGACAAT        CCAGCGGCTATC ATTC GATAGTCGTCGG         TCAAAGCGTTCAACA  54 74
CH54_RS22125 3197374 .. 3197390 -  -7.2  -3.57783   GCAGCACAACCACAA              GGCGGC AATGA GCCACC              AATGGATTTTGACGA  64 121
        uvrA 3193582 .. 3193616 - -12.3  -3.91506   TGAGGGCTAAAAAGA    GC-CTCTGGGACAGAGA GTT TC-CTGCCCCAGAGTGC    TAGTTTGATGTTTTA  93 38
CH54_RS14425 3187789 .. 3187817 - -13.5   -2.6563   CTTTTTAATAATTTA        TAATGGATAATAA TAT TTATTATCCATTA        TTGCAGCAGGAAATT  91 39
CH54_RS14420 3187176 .. 3187203 - -12.8  -4.52266   AATGAAACAGTAAAA        TCAGAGCCTCGA ATAA TAGAGGCTCTGA         TTCTTACTTTTATAG 100 144
         zur 3184363 .. 3184382 -  -6.4  -3.88731   GAAGACCACAGTAAA            TATCGCTG GTAA CAGCGTTA             AATGGATTTAAACTG  66 329
        plsB 3180059 .. 3180081 -  -9.9  -5.51402   AGACAGTTAAAAAAA           TGGCCAGAT GATGA ATCCGGCCA           TTTTTGTTTATGATT 100 62
        malE 3169571 .. 3169585 -  -5.7  -3.56568   CAAGCAGCGTTCAAA               TCTGC TCCCT GCAGA               TTTGTCACCCGAATC  58 177
        malF NONE
        malG 3166890 .. 3166910 - -12.5  -5.11112   AAACGCGAATAAAAA            TGGCGGCCA TGA TGGCCGCCC            TAAAGACACAGAACC 100 91
        lysC 3162902 .. 3162919 - -10.5  -4.87592   TTAGAGATAAGAAAA             CCGGACG AAAG CGCCCGG              TTTGTTTGTTATTGA  93 50
        panS 3161902 .. 3161920 -  -8.8  -3.19482   AATGGAAGGAATAGA             TGCCCGTT GCT AGCGGGCA             TGGTGAATAGGCTGA  68 42
CH54_RS14315 NONE
CH54_RS14310 3154962 .. 3154986 - -10.8  -5.45802   TTCGGAAAAGAAAAA          GGAGATAACC GTATA GGCTATCTCC          TTTTTTAATCACACT 100 64
        iclR 3149725 .. 3149756 -  -4.4  -2.63112   AAATTTGCTATATGA      CGGAGG-TGAATTTC CGC GATATTCCGCCCCCG      CGCTATCCGGAAGAT  44 392
        purH 3135673 .. 3135684 -    -3  -2.92061   CAATAATCAAAATAT                TCAT TTGG ATGA                 CTCCGTTAAGCGGTT  42 44
        purD 3134282 .. 3134303 -  -7.9  -4.63932   CAGTTTGTAAGAAAA           GGGGCACGG CGAA CAGTACCCC            TTGGAAAGACTTGAA  82 109
CH54_RS14205 3129004 .. 3129021 -  -4.1  -4.63218   GTTTTCCTAAGAAAA             CAG-GTGC TAG GCACTCCG             ACAAGAATCCTCAGT  66 209
        thiC NONE
        thiE NONE
CH54_RS14190 NONE
        thiS NONE
CH54_RS14180 NONE
        thiH 3123132 .. 3123149 -  -8.3  -5.01811   TCACCAAAGTAAAAA             CCGCTCC TTTC GGGGCGG              TTTTTTTTTGCTAAT  90 63
CH54_RS14100 3107513 .. 3107537 - -11.5  -4.39329   ACTCCAGATAATAAA          CAAGCTGCATA TTA TAGGCAGCTTG          CTTTTTGGCGTAGAC  93 146
        coaA 3106470 .. 3106491 - -12.3  -3.69809   TAGTCAATAAACTAA           GCGGGCAGT TATT ACTACCCGC            TATCTACTATTTTCT  90 32
        fadB NONE
        fadA 3090926 .. 3090942 -  -7.9  -4.66163   AGCGGCAGTTAAAAA              GCCCGCC CCT GACAGGC              GGGAAAACGGCAACT  84 87
        rfaH 3087844 .. 3087875 -    -8  -2.64942   GGTAGTAATAAAAGT      CGCAGGGTAGGTAC TGAG ATACCTACCTTGGG       TTTGTTAATTAAGAG  61 43
CH54_RS13950 3073176 .. 3073194 -   -11  -3.53012   GTGGTTGGCCGGAAA             CTCGCCAG GCA CTGGCGAA             CATGGTTCTGGCGGC  79 290
        metR NONE
CH54_RS13900 3061723 .. 3061750 -  -7.7  -4.15328   AAGTCAAAGGATAAA        GCAGTCAGATG GTTAAG CTCCTGACTGC         ATATATTTATTTAAC  77 51
CH54_RS13895 NONE
CH54_RS13890 NONE
CH54_RS13885 NONE
CH54_RS13880 NONE
CH54_RS13875 3056270 .. 3056291 - -10.9  -3.59979   TGCCTGCATCTTAAA           TAAGGCCCA GATC CGGGCCTTA            TTACTTATCTAATAA  82 44
        panM 3050113 .. 3050133 -  -3.9   -3.3422   GATTGGTTTAAAAAT            CACATGCCA GGG TTGCAGGTG            GAATTTATTGGTAGG  50 300
        rsmD NONE
CH54_RS13805 3041778 .. 3041790 -  -3.3    -5.252   TATTGGCAGAAAAAA                CGGCA AGA TGCGG                AAAATGACCGCTCAC  79 360
CH54_RS13790 3040185 .. 3040206 -    -3  -2.51179   ACAGAATGTAAAAGG           TATACAGG ATTTAG CCGGTATA            ACTGCACTCTACACC  41 242
CH54_RS13785 3037736 .. 3037769 -  -6.1   -4.1552   TATTTGGTCAAGAAA     GGGGCAAAAGC GGAATAACGTGG GCTTTTACCCC      AGTGTTCAAAAACTG  71 86
CH54_RS13775 3036400 .. 3036428 -  -3.9  -3.17527   TATCGATGATTAATA        TCCCCTCTG ATTTGAGATGG CAGAGGGAA        CAGCAACGCCAACCA  48 149
CH54_RS13770 3035662 .. 3035683 - -13.7  -3.28866   TGATAGTCAAAGACA           GAGCGCGGG TTTA CCCACGCTC            TTAGGCTGATGACAA  95 177
CH54_RS21925 3031042 .. 3031052 -  -5.4  -3.90048   GCGGGCTTAAAAATA                 CTCA ACA TGAG                 TGCCTCCGATGGCTT  63 263
        glpT 3029620 .. 3029659 - -10.8   -4.7373   TCAGGGTATGAAAAA  GGCTGTGTCGCTATTCAT CCAT ATAGATAACGGCACAGCC   TGTAAGCTACTTGAT  93 51
        glpQ 3028401 .. 3028425 - -11.5  -5.86061   TTGCAGTAAAAAAAA          TGGCGCACT GTAGATG AGTGCGCCA          TTTCTTATATTAAGT 100 75
        rhtB 3025302 .. 3025323 -  -3.7   -3.9226   AAGATACTTCAGAAA           GTGAGGTGCA AGT TGCACTTC-C           TGCGCGTGGCCGGAC  55 369
CH54_RS13710 NONE
        rarD 3020442 .. 3020455 -  -5.3  -2.73681   CACGCACCCGAATCA               CTTAC TTGT GTAAG                CTCATCGGGATGAGT  49 127
CH54_RS13695 3018233 .. 3018254 -  -5.8  -4.62984   GCAGGATACACAAAA           CCGAAGTC GAAGCT GGCTTCGG            TTTTTTACTGATATT  73 42
CH54_RS13680 3015148 .. 3015161 -  -5.3  -3.25073   CCTGCAATATCAATA               GGTTT GGGT AAACC                CTGTGACTCAATGCC  53 50
        cyaY 3008703 .. 3008720 -  -5.5  -4.87626   CTTGAACAGTAAAAA             GACACGC CAAA GTGTGTC              CTTTTCGCAGATTAC  79 154
        hemC NONE
        hemD NONE
        hemX NONE
        hemY 3001455 .. 3001470 -  -8.2  -4.87803   CAGGGGTAAAGAAAA              GGCCCC CGAA GGAGCC               TCAGACTGCTGACAA  86 161
        rhlB NONE
         ppx 2979165 .. 2979182 -  -9.1  -4.66609   GAGCGGATGCAAAAA             GGCCAGA GTCA CCTGGCC              AATATTCGTGCGCAA 100 100
        ppiC 2976284 .. 2976297 -  -5.3  -4.05389   CACACATAGGACAAA               CAAAC CAAT GTTTG                TAGGAATTTTCCCAG  63 384
CH54_RS13495 2975487 .. 2975499 -  -4.9  -3.05647   CTCCAATTACAGAGA                GTATA ACT TATAC                TACAATAATGATATT  51 39
CH54_RS13490 2974601 .. 2974614 -  -2.4   -3.5362   CAAGCCCCATAAATA               TTCC TTCGCC GGAA                AGTTACTACTGAATT  47 63
CH54_RS13485 NONE
        stbD NONE
CH54_RS13475 2969384 .. 2969400 -  -4.4  -3.44284   TTGCTATTAATAATA              GGGTCA GATTT TAACCC              TTAGAACTCTCAGAA  52 427
        ilvY NONE
CH54_RS13410 2952518 .. 2952539 -  -9.5  -3.15544   GCTCATCGGGATTAA           TGAGCCTCA TTCT TAAGGCTCA            CCCTACGGGCTAGCA  73 156
        hdfR 2950999 .. 2951010 -  -4.4  -4.09685   GCCCATGGTGGAAAA                TCTG TCAT CAGA                 ATTTTGCTATTTAGT  61 112
        trmA 2940099 .. 2940117 -   -11  -3.84719   ATCTCTAAATCGAAA             GGGCAACA TTG CGTTGCCC             TTTTGTTTGTGTCCG  86 55
        sthA 2937313 .. 2937328 -  -5.4  -3.07962   GGCGATACGTGAACA              CATGCA ACCG CGCATG               AGTTCAGAGGCTGTT  51 50
CH54_RS13325 2935382 .. 2935401 -  -7.8  -5.80817   CCTAACAGAAAAAAA            GGGTAGGC CGAA GCCTACCA             AGTATACCCTTCGTA 100 183
CH54_RS13320 2933841 .. 2933869 - -13.2  -3.14463   AAGGTTTGTCAGCAA        CCTAAACCGGGC ATAAA GCCCGGTTTAGT        TAGCGAGAAAAGATT  91 52
        argE 2918380 .. 2918398 -  -7.4  -2.86908   AATTTAATTACTACA             GCCAGATT ATC AGTCTGGC             TAATCGGTAATATTG  60 61
         ppc 2915537 .. 2915568 -  -4.4  -5.65513   TATCAACCAAAAAAA      GATAATCAGGGGAA TTTC TTCCCCTTAAAATC       AATGGCTAACCTGTA  89 31
        metJ 2909285 .. 2909299 - -12.8   -4.8048   CCGTCAGACGAAAAA               GGCGCC TTA GGCGCC               TTTTTTCATTTCTAC 100 84
        priA NONE
        cytR NONE
        ftsN 2904267 .. 2904303 -  -6.6  -2.75064   TTGCGGACTGAATGA    GTCCCCGTATTGCCTT TCAGC AAAACAATACGGGGTA    TATTGAGATTATAAA  57 61
        hslV NONE
        hslU 2902269 .. 2902300 - -12.4  -5.10461   GCGAGTTAATAAAAA      TA-AGAGTGGGAGGC ATC GCCTCCCACTCAATA      TTAATTTGGCGAACC 100 71
CH54_RS13200 2901230 .. 2901267 -  -3.5  -3.61764   TCATCAATTGTTAAA   TTTCTCCGGACAG GTTTATCGACTG TTGCCCGGAGAAA    GAAACAGGCGGGGTT  52 39
        rraA 2900619 .. 2900638 - -12.2  -3.78904   TACGAAAGGCAACAA            GGGCGATA TTGA TATCGCCC             TTTTTAGTTGATAAA  89 52
CH54_RS13185 NONE
        glpK 2897191 .. 2897215 -  -9.3  -5.55769   TTTCACAATAAAAAA          CGCGCCATC GGGGGAT GATGGCGCA          TTATAGAGAGCTTAA 100 68
        glpX 2895877 .. 2895902 - -10.4  -4.45151   AATACTGAACTAAAA         TGGGCGCGAC GTGAAT GTTGCGCCCA          TTATTGTTTATCGCG  90 76
         fpr 2893524 .. 2893537 -  -9.5   -5.1925   TTATAAGGTAAAAAA               GGGCC ATAT GGCCC                TTTACCCATACGGTT 100 43
CH54_RS13155 2892213 .. 2892243 -    -9  -3.03309   GGTCAATAATAATGA       CTGCCCGACAGGCA GTT TACCTGTCCAACAG       TATAGAGATGATTAG  69 80
        tpiA 2891355 .. 2891377 -  -9.1  -5.60689   CCAGATAATAAAAAA           GCCGGAGCA TCATC TGCCCCAGC           TTAATCAGTTGCTTA 100 50
        cpxR NONE
        cpxA 2883960 .. 2883989 - -18.7  -3.55592   AGAACGCCAGAAATA       GGCTGCCCGATCCA ATA TGG-TCGGGCAGCC       GGTTTTATCATTTCA 100 41
        trmL 2882044 .. 2882058 -  -4.3  -2.73364   CGCTCACCCGAATCA               CTTAC CTTAT GTAAG               CTCATCGGGACTCGT  47 123
        gpmM NONE
        envC NONE
CH54_RS13065 2874355 .. 2874381 - -10.1   -3.9749   AGGGAGAAGAGTAAA        GCGTCCGCGCCA GGGA TGGCGCGG-CTC         GAGCCCCCAGGGAAG  86 142
        rfaD NONE
        rfaF NONE
        rfaC 2868683 .. 2868714 - -11.6  -3.30441   TATTAGTTCTGATAA      CAGCCAGCTCTGAT AATT ACCAGCGCTGACTG       TTATTACACAGTAAA  85 91
        waaA NONE
CH54_RS13025 NONE
        coaD NONE
       coaBC NONE
         dut 2861425 .. 2861454 -  -2.7  -3.18155   ACAAAAACCCCAATA       CCGGCCGCAC-TGG ATA CCAAGTCCCGGCGG       CTTATGTGATAGCTT  44 68
        slmA 2860733 .. 2860746 -  -9.5  -5.63645   TGAAAATACAAAAAA               GGGCC GTTT GGCCC                TTTTTATATGACTAT 100 58
CH54_RS12965 NONE
CH54_RS12960 NONE
CH54_RS12955 NONE
CH54_RS21915 NONE
CH54_RS12950 NONE
CH54_RS21780 NONE
CH54_RS12945 2856493 .. 2856511 -  -3.8  -2.97475   CCCGGCACGATAAAT             GCGCCATT TTT AATAGCCC             GCTAAAACGCTATTT  47 43
CH54_RS12940 2856017 .. 2856030 -  -2.3  -2.50778   TTAGAATTCAAAATG               GGACG CCTC CGTCG                AAATCATCAAAACGG  39 4
CH54_RS12935 NONE
CH54_RS12930 2854380 .. 2854392 -  -4.1  -2.72152   CCGATTAGAAACCCA                TACCC CGT AGGTA                TTTCCTTGGTATTCG  45 183
CH54_RS12915 NONE
CH54_RS12910 NONE
CH54_RS12905 NONE
CH54_RS12900 2850231 .. 2850257 -  -3.7  -5.64421   AGGTGAAATAAAAAA         GCGCCTC TCTGTGTGGCGTG GAGGCGC         TTTTGTGTGGGGTGC  85 147
CH54_RS12875 NONE
CH54_RS12870 NONE
         gpM NONE
CH54_RS12860 NONE
CH54_RS12855 NONE
CH54_RS20875 NONE
CH54_RS12840 NONE
        lysB NONE
        lysC NONE
CH54_RS12830 NONE
CH54_RS12825 NONE
CH54_RS12820 NONE
CH54_RS12815 2839227 .. 2839246 -  -2.2  -3.55622   GGTAACTGGCTTAAA            TCAATGAT TGCC ATTATTGA             CCTCCTATTGGCACG  47 19
CH54_RS12810 NONE
CH54_RS12805 2837441 .. 2837459 -  -3.1  -2.54841   AATCGCAATCAATAC             GCCGTCT TTATC AAACAGC             CCAATTTCACGTATC  42 297
CH54_RS22105 2836217 .. 2836232 - -10.4  -4.93365   TGGCACAATGAAAAA              GCCCCT CAAG AGGGGC               TGGTAGGCTGGCTTA  93 38
CH54_RS12790 NONE
CH54_RS12785 2834421 .. 2834434 -  -5.2  -3.32844   TCCGCCATCTTACAA               GCCG ATATTG CGGC                GGTGGGCTTCCAGCA  54 6
CH54_RS12780 NONE
CH54_RS12775 NONE
CH54_RS12770 NONE
CH54_RS12765 NONE
CH54_RS12760 2829277 .. 2829296 -  -7.2  -3.15621   AAGGGCAATTGAACA            TGAT-CCGG ACT CCGGCATCA            TCCCGGCTATGGCCG  63 81
CH54_RS12755 2829013 .. 2829029 - -10.9  -5.72622   CTTATAAATAAAAAA              TCCTGCT AAA AGCAGGA              TCAAAGAATAGCTAG 100 58
CH54_RS12750 2828552 .. 2828571 - -16.4  -4.45485   ACCACATCGACAAAA            GCGCCCGC ATTT GCGGGCGC             TTTTCATCAGTATTC 100 54
CH54_RS12740 2826698 .. 2826715 -  -5.5  -4.75472   GGTAGAGTAATAAAA             GCCCAAA TTTC TCCGGGC              TTTAGTAAAACGGAT  75 53
CH54_RS22095 NONE
CH54_RS22090 NONE
CH54_RS12725 NONE
CH54_RS12720 2824315 .. 2824325 -  -5.4  -3.58565   GAAACAAGATGAGAA                 TACC CGA GGTA                 AATCACGATTATGGT  58 34
        pdeR NONE
CH54_RS12700 2818656 .. 2818668 -  -6.3  -3.36273   CGGCCCGAAGAGTAA                TCATC CGG GATGA                GCTTAATGTTCTGAA  60 28
         gmk 2816039 .. 2816054 -  -3.3  -2.78816   TGACTGGGCATGATA              CTGAA ACTCTG TTCAG               TCTGCCAATAATTTG  44 22
        rpoZ 2815705 .. 2815719 -  -4.3  -2.99251   CAAACAGGTACAAAG               TAGAC TCGCT GTCTA               ATTAACGACGACCTT  49 27
        spoT NONE
        trmH NONE
        recG 2810824 .. 2810838 -  -2.1  -3.27298   CTCCTTAATCATCAA               GCATT GGTAT AACGC               GTTCGCTCTGGTAGC  45 7
CH54_RS12660 NONE
CH54_RS12655 2806004 .. 2806025 -  -3.1  -3.29471   CGCCGATTACATGAA           TTACATGAA ATGT TTAATGTAA            TCGGCGGTTGTCACT  48 75
        glnA 2796964 .. 2796981 -  -9.9  -5.28826   AAAGTGGAGAAAAAA             GCCCATT ATGA AATGGGC              CAAAAGTTTCCACGG 100 61
        glnL NONE
        glnG 2793720 .. 2793730 -    -4  -3.75629   CAGCGGGAAGGGAAA                 TTAC ATC GTAA                 TTTCCAAGGTTATAC  55 515
        yihA 2790329 .. 2790349 -  -3.3  -5.60689   CTATACAACAAAAAA            TTCTTTTGC CCT GCGAAAAAA            TGATGTAGAGTTACA  83 303
        mobA NONE
        mobB 2783457 .. 2783476 -  -9.2  -4.43213   CCCAATAGACGAAAA            GGCTACCC TGAT GGGTGGCC             TTTTTGCGTTTAGTT  86 73
CH54_RS12530 NONE
        mdtD 2774879 .. 2774902 -  -4.6  -3.54741   TATTAGGCGGGGAAA          TGGCAACC TCGTATTT GATTGCCA           GAGGATATGCTCGCA  55 501
        ravA NONE
        viaA 2764010 .. 2764022 -  -3.4  -3.90112   GGTTGCTTAACTAAA                GCTA TTAAT TAGC                GCTTCCAGCGGCGCA  54 21
        asnC NONE
        mioC 2760772 .. 2760791 -  -5.1  -4.32402   CTTTAATTAAAAGAA            GATCTTT TTATTT AAAGATC             TCTTTATTAGATCTC  68 275
        mnmG 2758672 .. 2758684 -  -7.7  -2.83073   ATGTGGAGTAATAAT                CTAGC CGA GCTAG                TGGTTTGAATACTTC  62 112
        rsmG 2757771 .. 2757805 -  -2.9  -4.14422   GGATACATAAAAACA     TAATCTCTTCGGTAA AATAA TGACCAAAGTGACTA     TTTGGTCGCTTTCAA  57 207
        atpI 2756911 .. 2756923 -  -3.3  -3.64703   CTTTTTTTAGTTAAA                TACGG TGA CCGTC                GAATACGATAACTGT  52 40
        atpB NONE
        atpE NONE
        atpF NONE
        atpH NONE
        atpA NONE
        atpG 2752214 .. 2752234 -  -3.2  -3.56366   AATAACCTGGTTAAA           CCG-CGGAG GCTC CCCCGACGA            TCTCGGTGAGTTCCT  50 0
        atpD NONE
CH54_RS12405 2750063 .. 2750087 - -13.7  -6.07969   TAAAAGTAAAAAAAA          TGCCAATCAGT TTT ACTGACTGGCA          TTCTATCGTTCTTTA 100 164
        glmU 2748274 .. 2748307 -  -3.2   -3.6878   ACACAGGGCAAAACA     TCCCTTCAATGC AGAATAACGA ACGTTGAAGGGA      CTGTTTTAATAGATT  52 39
        glmS 2746214 .. 2746247 - -12.5  -5.37345   GCTAATCATAAAAAA     GTCCGGTGATGCTAT TTAA ACAGCACAACCGGAC      TTTTAGATTTATCGC 100 61
        pstS 2742977 .. 2742989 -  -3.4  -3.70676   TACAGGTAAAACGAA                CTTC AATCA GAAG                ATTGGCTTACCGCTG  52 19
        pstC NONE
        pstA 2740853 .. 2740868 -  -4.6  -3.05384   CTCTCTTTTAGCCAA              TGCCGC CGTA GCTGCA               TTTTGGAATTTATTG  49 86
        pstB NONE
        phoU 2739023 .. 2739067 - -16.7    -3.484   GCCATTATATTATAA TAGGGGAAATATACTTTCCCC ATG AGGGAAGTTATATTTCCCCTA AACAATAAAACCATT 100 234
CH54_RS12360 2738181 .. 2738223 -    -4  -3.03811   GAAAAAGTGAAATCA TGGGCGGGGA-AAACGGGC GATTAT GGCCGTGAATCCCCGGCCA AACCGCATTTCTAGC  47 91
CH54_RS12355 2737128 .. 2737152 - -12.9  -3.64541   GCATGAAAGCAAATA          GCCCTGCATCA CAA CAATGCAGGGC          TTTTGGTGTTCTCAA  95 53
CH54_RS12350 NONE
CH54_RS12345 2735218 .. 2735229 -  -4.4  -3.90048   GCCGGCGTAAAAACA                TTGC TAGA GCAA                 ATAACATTGCCGATT  57 394
CH54_RS12335 2733273 .. 2733304 - -14.4  -2.91656   AGATTATAAATACTA      CGCCCCCACCCTCG GTGT CGAATATGGGGGCG       TGTTCAAAATCAGTA  93 56
CH54_RS12310 2727441 .. 2727463 -  -9.9  -5.28176   GTGAGTGATAAAAAA           CCCCTTTCG GCTAG CAAAAGGGG           TTAATTTTTTTGGCA 100 124
        dnaA NONE
        dnaN NONE
        recF NONE
        gyrB 2712728 .. 2712754 - -11.7  -5.96521   ATCAAGTAAAAAAAA        GCCCAGAAACAG TTTC CTGTT-CTGGGC         ATTTCTATCTGACCT 100 70
        yidA 2711532 .. 2711548 - -10.1  -3.66999   ATGCAGCCAGGGAAA              TCCGGCA GGA CGCCGGA              TTTAGGCGTGCTTGA  80 258
CH54_RS12225 2707052 .. 2707066 -    -5  -3.25166   GTAGTGTAAAAATCA               TGTCAA AAC CTGACA               CTGTTTGCTGGCTTA  53 428
        ibpA 2706213 .. 2706224 -  -2.2  -5.38047   TAGCGATATAAAAAA                CCTG AACG CAAG                 ATACTGGCGTTATAT  76 134
        ibpB 2705463 .. 2705494 - -13.1  -4.53163   GGATACACCACAAAA      TGCACCGGAGAGT GGGGAA ACTCTCCGGTGAA       AAAACAAACACGGAA 100 205
CH54_RS12205 2703566 .. 2703594 - -13.9  -2.85008   GCTGAGAATAAATAG        CTAAGGGCCGC TTATTCG GCGGCCCTCAG        TTTTATTTTAAAACC  91 95
CH54_RS12180 2696081 .. 2696096 -    -4  -3.61806   ATATCAAGCAGATAA              TAACGG GACA CCATTA               ACGAGCCGCGATAGA  55 441
CH54_RS21575 2689762 .. 2689774 -  -9.1  -3.17685   GAATGAGAGAGGGAA                CCACG CGC CGTGG                CTGACATAACCCATA  70 181
        glyQ NONE
        glyS 2686572 .. 2686606 -  -9.3  -3.24825   AGTAAGAATAGCTAA    GGGGAGCGCATAC-CC TCTT GGTAAATACGCTCCCC     TGTGACGAGCCGAGT  70 47
CH54_RS12145 2685622 .. 2685641 - -11.4  -3.32844   CGCGGGATTGCACAA            GGGGCCAC GCTT ATGGCCCC             TTTGCCGGTTGGTTC  85 168
CH54_RS21775 2685356 .. 2685373 -  -8.4    -3.727   CTCATGACACCTAAA             TCCGCC GTCCAT GGCGGA              TTTCCCTGGCTTCAT  73 68
CH54_RS12140 2682667 .. 2682689 -  -9.8  -3.55444   TGTGTAGCTGTGAAA           GGGCCGCG TACTCCC CACGGCCC           TATTCAGGTTACGGC  77 94
CH54_RS12135 2681449 .. 2681483 -  -3.6   -3.9644   CGGCCAATACAACAA    CCGGCTCATCTGA-GC ACTGA GCATCAG-TGCGCCAG    CTTGTCCTGCATGGC  54 14
CH54_RS12130 2680782 .. 2680795 -  -2.3  -3.65046   GCTTGATGGCAATAA               CAGCC CTGT GGTTG                TTAGCTGAGGAATGG  50 58
CH54_RS12120 2678439 .. 2678451 -  -4.8  -2.88999   GTTGGAGATAGGATA                GCAC TGATT GTGC                ATCAAGATGGATAGT  50 44
CH54_RS12115 2677976 .. 2678002 - -12.3  -5.71712   GTGTATATAAAAAAA         CCGGGGGTG GCCATGCCA CACCCCCGG         CTCTATCGAAAATAG 100 44
        fdnG NONE
        fdxH NONE
        fdoI NONE
        fdhE 2667794 .. 2667820 -  -5.1  -2.72954   CAATATTATATATGA        CTCACCGGGAAG CTGA CTCCCCGG-GAT         ACTTATTCCCCAGAA  49 62
        selA NONE
        selB NONE
CH54_RS12055 NONE
CH54_RS12050 2662826 .. 2662851 -  -4.7  -3.33492   GCATGGATTGCACAA         TCGCCAGTGAT TCTG ATCAGTGGTGA          AAAATTATCTACTGT  52 479
CH54_RS12040 2660774 .. 2660787 -  -3.7  -3.89614   TTTAATCTGGAGAAA               GCGGC ACTG GCGGC                GGGTTTCTCCTCCAC  55 82
CH54_RS12025 2658278 .. 2658290 -  -7.7  -2.60079   GCAGGCTATAAGGCA                CCACA GGT TGTGG                AGAGAATTATTTCTT  61 32
        xylF NONE
CH54_RS12005 NONE
        gguB 2651049 .. 2651087 - -14.2  -3.36054   GAAAGGGATATAACA  GACAAAGAGATCAATGC AGTATG GCATTGATCTCTTTG-C   AAAGATGGGATCAGA 100 36
CH54_RS11995 2649780 .. 2649797 -  -2.1  -3.04517   ATCTCCTTCGAAAAT             TGGATGAT AGA ATCATC-A             TTAGCGGCTCAAAAA  42 44
CH54_RS21735 2649251 .. 2649266 -  -3.2   -4.4458   TAGAGAGATAATAAA              CAACAC TAAC GAGTTG               AGAATGCGAAGAAAA  62 349
CH54_RS11980 2643073 .. 2643096 -    -4  -4.30719   TTTTGTCAGAATAAA          GCTCATTTACA GAT TATAAATG-GC          AGAACATATCCATGC  61 15
        hutU NONE
        hutH 2638644 .. 2638670 - -15.2  -2.90212   GCAGGAGTTCAGAGA         GGGTGATTCCGG TTA CCGGAATCACCT         ACACATCACTGTTTT  95 75
CH54_RS11955 2637145 .. 2637182 -  -7.1  -3.26644   ATATCTAAAAATAAC   TCAGGCTAAAGATAATA ATAG TGTTATCAGTAGCCTGA    CTTGAGGTAATCACG  63 42
CH54_RS11945 2634788 .. 2634804 - -13.7  -4.77438   ACTCATTATGAAAAA              GCCCCCA ATT TGGGGGC              TTTAGAGGCACTATT 100 71
CH54_RS11940 2634244 .. 2634269 -  -6.1   -2.9244   AGGAAAAGGAGTATA         TGCCCACAAGA TAAC TCTCATGGGCT          GGCAAGTGAGGGTGA  56 45
        eptB 2632236 .. 2632286 -  -2.7  -2.93637   AAAGGCAACACGATA GGTCACGGTATACTCCAGC TGGCGGGGATTAG GTTGAAGTATACCGTAACA TTAAAGCAACATTGC  43 81
        uhpA NONE
        uhpB NONE
CH54_RS11920 2628701 .. 2628714 -  -6.7  -2.64747   TCATTCGAGCACAAT               CAAGC TTCA GCTTG                TTTCAACTGCGGTGA  56 11
CH54_RS11915 2628499 .. 2628518 - -10.8  -5.86965   AGGGACGAAAAAAAA            CCCTGATA TTGC TATCAGGG             TTCTTAAATTTGGTC 100 36
CH54_RS11910 2626865 .. 2626887 - -12.8  -4.46926   CATGCCATCAGAAAA           GTTAGCCACA ATA CGTGGCTAAC           TTTTTAAAAATACAC 100 81
CH54_RS11905 NONE
CH54_RS11900 2623445 .. 2623457 -  -5.5  -5.00616   CGTGCTGTTAAAAAA                GCGAA AAA CTCGC                TGAGTCATTCGTCCG  79 138
CH54_RS11895 2621246 .. 2621277 -  -7.3  -3.72765   AACCTAAATGCGAAA      CCGGCGAACATGC TTTTAC ACACATTCACCGG       TTATCTAACAGGTTA  68 44
        dppB NONE
        dppC NONE
        dppD NONE
CH54_RS11875 2616994 .. 2617009 -  -8.2  -5.64274   TCAGTTATAAAAAAA              CGCCGG ATAA CCGACG               TTTTTTATTGATGTT 100 60
        bcsR NONE
        bcsQ NONE
        bcsA NONE
        bcsB NONE
        bcsZ NONE
        bcsC 2602497 .. 2602523 -  -3.7  -5.27476   CTGAATAAAATAAAA        TG-GTTGCCACA GTGA TGCGGCGACTCA         TCGATGCTGTCCGAG  78 193
CH54_RS11825 2600589 .. 2600600 -    -3  -4.07246   TTAGTTCAAAGTAAA                TAGT TTTA ACTA                 ATGCACTGACACTGT  55 356
CH54_RS11820 NONE
CH54_RS11815 2597894 .. 2597917 - -15.3  -3.14931   GGCACTTTTTACCAA          CAGCGGCCC CAGCAC GGGCCGCTG           TCGGGACTATTTACG 100 32
CH54_RS11810 2596100 .. 2596128 - -11.7  -2.52156   GCATAATGAAGAGAT        GCTACCGGTGACA ATT CGCCACCGGTAGT        TTTTAGAATGTAGAG  81 54
CH54_RS11805 2594199 .. 2594226 - -13.6  -3.43203   TCAGGACAACACCAA        TAAGCCCGGTACA TAG TGT-CCGGGCTTA        TTCATAACGACTCAA  95 49
        pdeH NONE
CH54_RS11785 2589202 .. 2589213 -  -7.2   -4.2231   AACCAGCAGTCAAAA                CCGC TTTG GCGG                 CACAGGAAGCCGATT  73 335
        prlC NONE
        rsmJ 2581642 .. 2581665 -   -11  -4.67038   TGTTTAAAATCAAAA          GCGACAGCAA TAGT TTGCCGCCGC           TTTTTTAACACTGAC  93 175
        uspB 2576954 .. 2576973 -  -9.2  -4.05788   TTTGGGTAAAGTAAA            GGCGGCCT TTTC AGGTCGCC             TTTTTACTTATTTTT  83 57
CH54_RS11725 2573835 .. 2573845 -  -5.4  -3.09635   ATTTCTATCAGCTAA                 CTGA AAA TCAG                 CCCGCTTTCTGGCTA  54 87
CH54_RS11710 2571048 .. 2571067 -    -5  -3.58536   AAAGTTAGTCTTAAA            CAATACAG AGAC CTGTTTTG             CTTTTTGATCTATTT  56 314
CH54_RS11705 NONE
CH54_RS11700 NONE
CH54_RS11695 NONE
CH54_RS11690 2566585 .. 2566599 -  -2.8   -3.0539   ATAGTGACAAATAAT               CGTATC ATT GATACT               CCAATACCCAAGTGG  43 15
CH54_RS11685 2565541 .. 2565562 -  -8.7  -3.42503   CGCTAATATTTAGAA           GCCTCAACC ACTC GGTTCAGGC            TCCTTTTGGACTACT  70 54
CH54_RS11670 NONE
        iolB 2559272 .. 2559293 -  -6.6  -3.73982   GGCAGATCAATAGAA           TGGGTAGA ATCCCA CCTACCCA            TCAATTCGTTTTTAA  66 51
        iolD 2553651 .. 2553679 -  -3.2  -2.90841   ACATTCAGATCAAAT       GTACCCGTCATCT TTCA AGTT-ACAGGTAC        GTTAATAATCACGGG  44 27
CH54_RS11645 NONE
CH54_RS11640 NONE
        iolE 2550506 .. 2550524 -  -5.2  -4.79223   CCAGAGCAGTAAAAA             CTCCTGCC ATT GGCAAGAT             GACAAATATTGCTAA  74 37
CH54_RS11625 2548741 .. 2548762 -  -5.9  -4.93877   TTCTAGCAAATAAAA           GGGTATG ACGCGATG CATACCC            TTTTTTACTTAGGAC  79 49
        gntR 2547257 .. 2547268 -    -3  -4.26903   CTGACTCCATCAAAA                TCAT TGCG ATGA                 TGTTGTTGGTTATTG  59 452
CH54_RS11610 2545444 .. 2545470 -    -8  -2.62263   ACGCCGGTTATATGA         CCTCAGAGGG GCAATAA CCCTTTGAGG         TTGCTGACAAACCTA  61 186
         asd 2543443 .. 2543464 -  -8.7  -5.52023   ATGAGCAATAAAAAA           GCCCTGACC ATAA GATCAGAGC            TTTTTTGTTATTATT  95 53
CH54_RS11595 NONE
CH54_RS11590 2542572 .. 2542602 -  -9.9  -3.42364   ACCTAACAGATAAGA       GACATAATGCTAT GTGAA ACAGCATTATGCC       TTATTTTAAATATTA  75 38
CH54_RS11585 2540912 .. 2540930 -  -6.2  -3.97088   CTCTATAAGATTAAA             TAAATAAT AAA ATTATTTA             TTTCCTATCATTAAA  69 284
CH54_RS11575 2540489 .. 2540531 -  -2.9  -4.56642   AAAAACAAATAGAAA CACACCCTACTAAGTAT CAATAGAGC ATAATTAATATGGTGTG CTTTTAATTTTATAT  62 56
CH54_RS11570 NONE
CH54_RS11565 2537020 .. 2537038 -  -8.9  -2.54955   AGAATTATCATTAAG             TTGCCGT TTATT ACGGCAA             GTGAATGAACCACTC  67 56
        glgB NONE
        glgX NONE
        glgC NONE
        glgA NONE
        glgP 2525412 .. 2525438 - -10.3  -5.41746   AATCTGTTAAAAAAA        CCTCTTCA-CAG TTCG CTGCTGAAGAGG         TTTTTTGTTATTAAC 100 52
        malP NONE
        malQ 2512965 .. 2512991 -  -8.7  -3.04715   GACGGCGGCGAAAAG        CGCGCTTGGGCA GGGA TGCCC-ATCGCG         TTGGCTCGATAAGGC  67 210
        bioH 2510599 .. 2510619 -  -3.3  -2.68279   TAGCCATTAAATCGA            CGATTAAAT TTT ATTTAGCCG            CTCTTTTCAACCGGC  43 86
CH54_RS11475 2510209 .. 2510230 - -14.5  -2.85346   AACAGCGCACCAAAT           GAGATGCCC ACTT GGGCATCTC            TGCTAACATTATTTA  93 34
        greB 2498995 .. 2499026 -  -3.6  -2.87319   GGTAACTGAGTAAAT      CCCCAAGAGCTTAC ATAA GTAAGTGACTGGGG       TGAACGAAAGCAGTC  44 134
        ompR NONE
        envZ 2496612 .. 2496629 -  -6.9  -4.55023   TGTAAGATGACAAAA             GGGGCAC ATTG GTGTCCC              TTTTTGTTTTTCGCA  79 217
        nudE 2489217 .. 2489243 -  -5.9  -5.14626   AGCACCAAAATAAAA        GCCGGGA-AATC GCAA GATTGTCCCGGT         TTTTTTATGGCGAGC  81 50
        pilM 2485588 .. 2485599 -  -4.4  -2.77455   TGATGAGAAATTAAC                CTGA TACA TCAG                 TAATCTGCCGGGCGT  48 22
CH54_RS11375 NONE
CH54_RS11370 2484369 .. 2484392 -  -3.8  -3.60792   GCGCCAACCGTCAAA          GCCGGTAATG CCAC CATCAACAGC           CCTCCAAACATCCAC  52 56
CH54_RS11365 NONE
        hofQ 2482438 .. 2482453 -    -4  -2.85668   TAGTGCGAGATCAGA              CTGAAA ATTA TCTCAG               CACTTCTGGTAGTTT  46 252
        aroK 2481783 .. 2481794 -  -3.6  -2.52795   AACCTTCTTAACTTA                CGCC CGCG GGCA                 TTAGTAAAATGCTAA  42 42
        aroB 2480543 .. 2480556 -  -4.5  -2.80056   ATCATCCATCTAAAC               CCTCC AACT AGAGG                CAAAAGCCTACCGCA  48 139
CH54_RS11345 2479496 .. 2479507 -  -3.6  -2.87211   ACTCTGTTTCAGACA                GCAC ATCA GCGC                 ACAAATAAGAATGAT  44 41
         dam NONE
         rpe NONE
CH54_RS11330 NONE
        trpS 2476067 .. 2476093 - -11.7  -2.65448   TTAAACTGAATTAAC        TCTGAAGGGGGA GAAA TCCCCCTTC-GA         CTGACGCACTGATTG  81 47
CH54_RS11300 2468709 .. 2468723 -  -4.2  -3.75024   TGTCAGCACCAATAA               CCCAGA GCA CCTGAG               CTACTACATTCTGGC  55 370
        ppiA 2464154 .. 2464177 - -11.1  -4.08706   TTTTTAGGAGATAAA          CCAGCTTTC GGGGAT GAAAGCTGG           TTGCAGCAATTAAGG  88 35
CH54_RS11275 2462502 .. 2462518 - -10.8   -3.3095   AGATATTCGGGATAA              CCCGCC TTAAT GGCGGG              TTTTCTCGTTTTAGA  80 62
CH54_RS11270 NONE
CH54_RS11265 2460603 .. 2460613 -  -2.6   -3.4052   GTGCAATTCAAGCAA                 TTAA TTT TTAA                 GGAAATTATCCAATA  46 15
CH54_RS11260 2459209 .. 2459227 -  -6.7   -5.0538   CGGCATCGTAAAAAA             GAGAGGC AAAAA ACCTCTC             CACAATCCGTTGACA  85 51
CH54_RS11245 2455336 .. 2455349 -  -2.4  -3.14132   CCGCTGGTGCAGCAA               TTGC TGGAAG GCAA                GAAGATCGGATAATT  43 105
CH54_RS11225 2452283 .. 2452297 -  -5.7  -3.68222   CTTTAAGGTCAACAA               CCAGT AAGTG ACTGG               GGTGACAAATCGGCC  60 121
CH54_RS11220 2451324 .. 2451348 -  -9.5  -4.09108   CGGAATGGAGACAAA          GGAATAAAAAA TTA TTCTTTATTCC          TTTATGTGATAACAA  86 82
        tauA NONE
        tauB NONE
        tauC NONE
        tauD 2447173 .. 2447185 -  -4.7  -4.04482   CTCGGTAAAAAAAAG                CGGCC ACG GGTCG                GTTTTTTTGTTTCTA  62 455
CH54_RS22080 2445564 .. 2445574 -  -5.4  -3.61654   CAGACGCAGGTGAAA                 TCCA AGC TGGA                 AGAAACTGAGATGCA  56 336
        kefG 2443060 .. 2443070 -  -2.4  -3.70902   CTTTCCATATTCAAA                 GCCC TCC GGTC                 GGTAGCGGTGACTGC  49 10
        kefB NONE
CH54_RS11170 2440918 .. 2440945 -  -4.2  -2.77538   CTTGGAACAAAAATT        GGCACAGATT GTAGCGGA AATCTGCACC         GCTGTACTCTTCAGC  46 64
        slyD 2440244 .. 2440261 - -12.7  -4.96106   CATAAATAGCAAAAA             GCCAGCC GCAA GGCTGGC              TTTTGACTGACCATA 100 66
        fkpA 2438803 .. 2438826 - -12.4  -5.79526   ATACCGCAAAAAAAA          CCGCCACGAC AATT ATCGCGGCGG           TTATAGCAGAACCGG 100 71
CH54_RS11150 2437891 .. 2437907 -  -6.5  -2.55351   GCCCCTGACATTAAC              GCTCGTG TCC CACGAGA              TCGCCACTTTTGAAC  54 4
        tusD NONE
        tusC NONE
        tusB 2436787 .. 2436798 -  -2.2  -3.41738   GTGTCAAGAAATATA                CAGC ATTG ACTG                 CATTACCATGCCAGT  45 28
        rpsL NONE
        rpsG NONE
        fusA NONE
         tuf 2432212 .. 2432227 - -11.8   -5.4833   TTAGGCAATAAAAAA              GGGCGC CGAA GCGCCC               TCTTACTTGATCAAT 100 64
         bfd NONE
         bfr 2431088 .. 2431102 -  -5.6  -3.68024   TCGTTCAACATATAA               CCCCCA TAT CGGGAG               TATTGTTCAGTTCCA  60 299
        rpsJ 2430681 .. 2430695 -  -3.5  -2.72379   TCAATCGCTCAATGA               CCTGA TTAAC CCAGG               CTGATCTGCACGTCT  43 16
        rplC NONE
        rplD NONE
        rplW 2429083 .. 2429094 -    -3  -3.12668   TAGGTTTACATTTAA                CAAT TGCC ATTG                 TTTACTCCTCCGACT  44 40
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ 2425994 .. 2426020 - -10.2  -5.24531   AGTGGGTAGAAAAAA         TAAGCGGCCC ATTTTCA GAGCCGCTTA         TTATGTTCGAGTCAG 100 49
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN NONE
        rpsH 2423873 .. 2423883 -  -3.2  -2.60075   TCCTCCCGAATTAAG                 CTAC GTA GCAG                 ATAATCTCGCCACCA  43 10
        rplF NONE
        rplR 2422963 .. 2422973 -  -3.2  -3.32963   ACCTCTACCTTAGAA                 CTGA AGG CCAG                 CTTCACGGGCAGCAT  48 9
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
        rpmJ 2420269 .. 2420298 - -12.3  -4.61868   CAGTCACATACAAAA       GATTG-GCTGGCTA ATC TAGCCAGCTCAACC       CAACTTTGCAAGAAA 100 56
        rpsM NONE
        rpsK 2419413 .. 2419429 -  -7.9  -4.42851   CCAACAAACCTAAAA              GCAGCGT TAT ACGCGGC              GCTTTTTCGGCGGAC  80 15
        rpsD 2418765 .. 2418783 - -10.4  -3.14132   TCTCTTTGGTACTAA             GCTTTACT TGG AGTAAAGC             TCGACGATCAGGTGT  75 10
        rpoA NONE
        rplQ 2417286 .. 2417299 -  -9.5  -5.47218   CTGGACGTAAAAAAA               CCGGG CAAG CCCGG                TTTTTTTACGCGTTT 100 46
CH54_RS10960 NONE
        zntR 2416328 .. 2416339 -  -2.2  -2.71125   ACTGCCTATAAATAC                GGAT AAAA ACCC                 ATCCTCTAAAAAAAT  40 41
CH54_RS10950 2416029 .. 2416046 -  -9.9  -4.03204   TATTAAATGTAGAAA             GCCATCA ATAT TGATGGC              TTTTTTATTGCTTTC  86 44
        dprA NONE
CH54_RS10915 NONE
CH54_RS10910 NONE
        tsaC NONE
        aroE 2407081 .. 2407091 -  -6.8  -3.76568   TCACTCAGAACATAA                 TCCC AAG GGGA                 ATCCGCTGATTATTG  63 392
CH54_RS21830 2406373 .. 2406402 -  -2.9   -3.5393   ATTACTTTCTGCAAA       TATGCATTCGAAC CGAA GTTCAAATGTGTA        CTGCTTTGGTCACTC  48 35
CH54_RS10890 2404682 .. 2404705 -  -5.2  -3.81929   CAACAAGGTACTAAA          GCCCGACTAA TTTC TCAGCCCGGC           CTTATTTGCTCGTTA  61 90
CH54_RS10885 2404527 .. 2404542 -  -2.4  -3.49475   CTCATTCTCAGACAA              GGCGCA GTCA CGCGAC               GTTTATTGTTATAAA  47 74
CH54_RS10880 2404350 .. 2404396 -  -8.3  -3.45839   ATTGTTAAAGAGCAA TATTTCACAACACACTG-AGTC TTGC GACCGCAGTACGTTTTGAAATA GTTTTATATGGTGGA  72 34
CH54_RS10875 2401188 .. 2401198 -  -6.8  -4.39386   CTCAAATCACCAAAA                 CACC TTC GGTG                 TTGTAAGGTTAAGCC  76 30
         rrf 2400882 .. 2400902 - -13.3  -5.71712   TCCGATATAAAAAAA            GCCCTCTGC GCA GCAGAAGGC            TTTTCTCTTTTTCTT 100 95
        gltP 2394291 .. 2394321 - -14.8  -5.08088   AACGCCCAATAAAAA       CCCCCCTGTTAG TCTCGCT CCAACAGGGGGG       TTTTAACTGATAAGT 100 106
CH54_RS10835 NONE
CH54_RS10830 NONE
        sctD NONE
CH54_RS10820 NONE
CH54_RS10815 NONE
CH54_RS10810 NONE
CH54_RS10805 NONE
        sctE NONE
CH54_RS10795 NONE
CH54_RS10790 NONE
CH54_RS10785 NONE
CH54_RS10780 NONE
CH54_RS10775 NONE
        sctF NONE
CH54_RS10765 NONE
        sctI NONE
        ssaJ NONE
CH54_RS10750 NONE
        sctL NONE
CH54_RS10740 2377198 .. 2377213 -  -4.6   -2.6381   ACAATTCTCACACTA              TCGGGC ATTC GCCTGA               ATTGTAAAATCACAT  47 35
CH54_RS10735 NONE
CH54_RS10730 NONE
CH54_RS10725 NONE
CH54_RS10720 NONE
CH54_RS10715 NONE
CH54_RS10710 2371603 .. 2371617 -  -2.8   -3.8211   TGTTATCCACAACAA               TTGGTG TTG CAGCAA               GGCAGCCAGTGAATA  53 106
        sctR 2370775 .. 2370792 -  -4.9  -2.81547   TCGCCAGATGAACCA             CAATG-GC CGT GCTCATTG             CTGCTTCCTTTGATG  50 46
CH54_RS10700 NONE
CH54_RS10695 NONE
CH54_RS10690 2368537 .. 2368548 -    -3  -3.78775   GCCGTGACGAGGAAA                TAGA CCTA TCTA                 TAATAAGCCAATTAT  50 136
        yedE NONE
        yedF 2366842 .. 2366883 -  -8.1  -3.16218   GATAATTAATAGAGA GTGGGCCATAAGCAATATCA ATA CGATAAAACTTATGGCCC-C TGAATGACTTATTTC  65 119
CH54_RS10670 2361897 .. 2361937 -  -7.1  -4.02581   GCTGAGAAAATAGAA TGTCATCATTA-GCCCGCA GAAAT TGCGGGCTTTATGATGA-A TATATTGAGCTTGTT  73 39
CH54_RS10660 2360023 .. 2360039 -  -7.9  -3.13403   TTTGCGTCAGTAATA              GCCAGCC TAA GGCTGGT              TTTGCTTTTCAGCTA  65 15
CH54_RS10625 NONE
     dnaB-PI NONE
CH54_RS10615 2349103 .. 2349114 -  -4.4  -2.80935   ATGTCAGGCATCATA                TGCA TCCT TGCA                 GGTTTGTAGATTGCA  48 2
CH54_RS10610 NONE
CH54_RS10605 NONE
CH54_RS10600 2346994 .. 2347018 - -17.3  -2.77569   AAATAACCTTAACCA          CCACTGATGAC ACT GTCATCAGTGG          TTACTTTTTGACCTG 100 45
CH54_RS10575 2341134 .. 2341168 -  -2.8  -4.72127   ATATAACATATAAAA     CCTCAGCTAACAGTCT TAG AAACCGCTAACTGTGC     AAGCTGTAGTGGTCA  65 38
CH54_RS10570 NONE
CH54_RS10565 NONE
CH54_RS10560 2339100 .. 2339116 -  -2.9  -3.61638   AATAAAAAAAACAAT              CCAGCCC AAT AGACTGA              GCAAAAGTACCCATT  48 80
        traD NONE
CH54_RS10550 2335899 .. 2335919 - -14.1  -2.83249   TGCTACAGAACACGA            TCAGCTCAG TGT CTGAGCTGA            TACATTTAATGGTAT  93 279
CH54_RS10545 2333560 .. 2333570 -  -2.4  -2.91264   TTTCTTAGTCATATA                 CCAC TCT GAGG                 TTGATCTGCATACAA  41 54
CH54_RS10540 2332959 .. 2332979 -  -9.8  -3.56099   CATAATGGGTTTAAA            TAGATGGG AATTA CCCATCTA            TTTAATATAACAATT  77 43
CH54_RS10535 NONE
CH54_RS10530 2329783 .. 2329793 -    -4  -3.02144   TTATTCGCTCCAAGA                 TATG CAT CATA                 TTGCTTATTGACTGC  47 354
CH54_RS10525 NONE
CH54_RS10520 2328672 .. 2328684 -  -2.7  -2.97423   TTTAATAACATGATA                TCTTC CTT GAAAA                GGGGTATAAAACTTA  43 38
CH54_RS10515 NONE
CH54_RS10510 NONE
CH54_RS10505 2327206 .. 2327222 -  -2.1  -3.21684   CCACAATCATCAACA              GGAGCTG GCA CAGCATC              AGGTAATGGCATTTT  43 51
CH54_RS10500 NONE
CH54_RS10495 NONE
CH54_RS10490 NONE
CH54_RS10485 2321570 .. 2321581 -  -5.8  -2.87463   AAGCCTTGCCAGATA                TGGC GTCC GCCA                 TCTATTTATAGGCTA  52 98
CH54_RS10435 NONE
CH54_RS10430 2313222 .. 2313236 -  -8.5   -2.7758   GATTAAAGAAGCAAG               GCCCG AATTA CGGGC               TCTCTCTATGGGGTG  66 180
CH54_RS10410 NONE
CH54_RS10405 NONE
CH54_RS10400 NONE
CH54_RS10395 NONE
CH54_RS10390 2305545 .. 2305555 -    -4  -4.26463   ATATATTAAGATAAA                 TACA GCT TGTA                 TAACGATATATTTAT  61 306
CH54_RS10375 NONE
CH54_RS10370 NONE
CH54_RS10365 2303162 .. 2303183 - -10.9  -4.11404   CCGAGAGGAGACAAA           GAAGCCTGT TTTT ACAGGCCTC            ATATCTGTATTCAGG  88 42
CH54_RS10355 NONE
CH54_RS10350 2301420 .. 2301448 -  -7.4  -2.68072   TCGAGGAGAAGCAAT        CCGAGCTGGA GGTTCACAT TCCAGCACGG        TGGCAACCATCTGAA  59 457
CH54_RS10340 2299809 .. 2299822 -  -3.9  -3.80768   TAGAGAGAAAAGCAA               TACTT CATG AAGTA                TTAAAACCATTCTTA  57 120
CH54_RS10315 NONE
CH54_RS10310 2293147 .. 2293173 - -13.8  -2.97747   GATAATAGAAAATAT         CTCACCAGGG AAAGGAG CCCTGGTGAG         TGAGTTACTTGAATA  93 49
CH54_RS10305 2291562 .. 2291572 -    -4  -3.24926   CATCTGAAAAACAAT                 TTCA ATA TGAA                 TGCTTCTCCAGTTTA  48 60
CH54_RS10300 2290122 .. 2290136 -  -4.2  -4.24342   GTTCTGATTAATAAA               TAACGC GAA GCGTGA               AATCATTCCAGCTTG  61 265
CH54_RS10295 NONE
CH54_RS10290 2286423 .. 2286450 - -11.3  -3.01712   CTCTTTTCCGGAACA        CCGGAACCGGGC CATTT GCCCGG-TCCAG        AGCGGCAGAGCTAAA  81 60
CH54_RS10280 2283753 .. 2283768 -  -2.6  -3.41359   TTTTCAAAACCAATA              TCATTC TCCG AAATGA               GCACTCATCACTTTG  47 422
CH54_RS20800 NONE
CH54_RS10265 2282469 .. 2282479 -  -6.8  -3.42147   TTCAACCAATATTAA                 TGGG TTA CCCA                 TGGCTATCATAACGT  62 90
CH54_RS10260 2281450 .. 2281462 -  -9.1  -3.32769   GTGTCAAATCAGCAA                GGCTC ACT GAGCC                CTTGCCTCAAGCCGT  72 40
        garL 2279189 .. 2279199 -  -2.4  -3.03159   GCAAGGCCGTCAATA                 CGGC AGC GCTG                 AATGCTTGATACAGA  42 48
        garR 2278215 .. 2278239 -  -7.2  -3.05463   AGCTTTGCTACTCAA         TGGTCGGCACC TGAG AGTGCCGAC-A          TCACTGATTAACGTG  61 53
CH54_RS10235 2276919 .. 2276955 -  -6.5  -2.87211   AGGGGCGGTCAGACA    GGAGATCGGGGCCAA TCCATCG TCAGCCCTGATCACC    TGCAAATTAGGCTTT  55 32
CH54_RS10230 2275084 .. 2275118 -  -2.1  -3.86194   AATGTGGTTGAGAAA    GCACTG-GGTTCAATT GCCA AATCGGGCCGCAGCGC     CATTGCGGAAGTGCT  52 506
        aegA NONE
CH54_RS10210 2269266 .. 2269280 -  -5.6  -2.81535   TGACCATAAAATTTA               GCGGGT GAT ACCCGA               TGTCGCGCCACGAGC  52 8
        fdhF 2266791 .. 2266801 -  -5.4  -3.91908   AGAGTTTGAAAAATA                 CACT TTC AGTG                 ATGACAAAGTTCAGC  61 278
        fxsA 2260818 .. 2260852 -  -8.1  -2.52676   CATCCCTTCAAGGGA     GAGGACAAAAAAAAA TTCAG TTTTTTCTTGTCCTG     AGAGGGCTAATTTTA  61 131
CH54_RS10175 2260403 .. 2260415 -  -4.8  -3.02381   TCAGAAGATTAGAGA                GCGT GAATT ACGC                TTCAACAATTGCCAG  51 20
        groL 2258646 .. 2258667 - -10.1  -5.60993   TTTCCTATAAAAAAA           GCGAGCAGG TTTC CCCACTCGC            TTTAGGTTTATAGCT 100 65
CH54_RS10165 2257958 .. 2257981 - -14.6   -3.3197   AGATGACGGGTATAA          CAGGGGACGC CATT GCATCCCCTG           TGCACCCTTAAAATA 100 43
         efp 2256069 .. 2256093 - -10.8  -2.72036   CAAACCCAGATAGCA          GAAAACCGCC GATTA AGCGGTTTTC          TTTTGTTCTCAACGC  76 69
CH54_RS10150 2255656 .. 2255673 - -14.1  -2.54371   CCTGCCAAAGAAATC             CGGCGGC AATG GCCGCCG              ATAACAATGCCTATA  93 173
        sugE 2255173 .. 2255201 - -13.1   -2.6186   ATTGAACTCTATAAT        CGACTAAGGGGGG AAG CCCCCCCTTGTCA        TTTATGACGCTAATT  90 27
        epmA 2249418 .. 2249444 - -11.7  -5.48514   AGTAAGAAACAAAAA        TGCCCTGAACCT TCAC AGGT-CAGGGCA         TTTCTTTTAGCACCG 100 312
         orn 2242822 .. 2242839 -  -3.5  -2.73159   GCAAGCCCCTGAAAG             CAAAAAA ATCA TTTTTCG              GTTTAAGTGCCGATT  43 398
CH54_RS10085 NONE
CH54_RS10080 NONE
CH54_RS10075 2241818 .. 2241829 -  -2.2  -3.65351   GTATTGGCACTGAAA                GCACG CCG CG-GC                ATTAATCCGATGTTA  50 513
         nnr NONE
        tsaE 2238712 .. 2238729 -  -4.9   -2.8166   GAGCAAATAAACTCA             CCATAAT CAGC ATTACGG              CAGCCAATGATGGTC  50 103
        amiB NONE
        mutL NONE
        miaA 2234053 .. 2234063 -  -5.4  -2.83867   CTATGCACTAACAAC                 CTGT ATT ACAG                 AGTCTAAAGCCTCTC  52 0
         hfq 2233546 .. 2233557 -  -7.2  -4.33165   TCAAACGGATCAAAA                CCGC TAGT GCGG                 AGAACATAAACCCGA  78 85
        hflX 2232222 .. 2232238 -  -2.2  -3.49135   CAGATAATCAATTAA              TTAGCC GTACT GGCTCA              TTAGTAATATAACTG  47 1
        hflK NONE
        hflC 2229770 .. 2229787 - -10.5  -4.89567   GCCTAAAATAGAAAA             GGCCCGC GTGA ACGGGCC              TTACTGTTGCTGTCA  93 64
CH54_RS10020 2229504 .. 2229520 -  -5.1  -2.80493   TTTTTAACACATAAC              TGCACAA TTT TTGTGCT              TACATTTAGCCACCC  50 31
CH54_RS10015 2228060 .. 2228089 - -15.9  -4.05926   TAAGAAAGGTATAAA       CAATAAACCGGAC GTAA GCCCGGTTTATTG        GAATCTGAATTCTGA 100 64
        nsrR 2227368 .. 2227380 -  -2.7  -2.86291   TATTAAACAAAAAGC                TACTC AAC AAGTA                ATAGCTTATAGAGCG  42 12
         rnr 2224668 .. 2224689 - -13.7   -2.6805   TAAATATCAATGAAT           TCGGGCGAC CAGG GCCGCCCGA            CAATCAGCAGGCCAT  91 40
        rlmB 2223840 .. 2223863 - -11.8  -4.99645   ATCTGACAAACAAAA          GGCCAACATC CGAA AATGTTGGCC           TTTTTGACATGCAGG 100 54
CH54_RS09995 2221683 .. 2221709 -  -6.4  -4.08279   ACACTTGAGAAATAA         TGGGCAGGGCGG TGA CGGCCCTGCTGA         CAAAGAGGTAAAAAT  69 360
        yjfP 2220324 .. 2220346 -  -2.6  -3.01783   CTAAAATTAATTACA           TCCACCGC AAAACAA GCGGCGCA           GCTAACTGAAAGTTA  43 449
        rpsF NONE
        priB NONE
        rpsR NONE
        rplI 2218491 .. 2218522 - -13.9  -3.88559   AAGCACCGCCAGAAA      GC-AAAACGCCAGC ACAAG GCTGGCGTTTTAGC      AGGTTAACAGCAGCG 100 45
CH54_RS09945 2216138 .. 2216156 - -14.6  -4.86939   CAATAAACGCAAAAA             GGGCGACA TCA TGTCGCCC             TTTCTCATGCCATTC 100 51
        cysQ 2212189 .. 2212215 -   -13  -3.05384   CTGCCCCCCACCGAA         GTGCAGCAGGTC ATC GACCAACTGCAC         CAGCTCGTAAAACAA  91 46
CH54_RS09920 2210965 .. 2210986 - -17.3  -2.93623   TTCCTGAAAACATTA           GCGGCCCCT AATT AGGGGCCGC            AATTAATTCTGTACG 100 159
CH54_RS09905 NONE
CH54_RS09900 NONE
CH54_RS09895 2202114 .. 2202134 - -11.9  -5.07567   GCACATGGCAAAAAA            GGCACCTTC TGA AAAGGTGCC            TTTTGAGTGAACAGC 100 90
CH54_RS09885 2199609 .. 2199625 -  -9.4  -4.55625   AGTAATATCATAAAA              GCCACC TATTG GGTGGC              TTGATATTTACGTTT  91 78
         mpl 2196834 .. 2196852 -  -7.4  -4.12225   AAGCATGAAAGTAAA             TGCCCC GCTCGTA GGGGCA             TACTTTCCAGCATGA  73 202
         mdh 2193769 .. 2193791 -  -4.1  -5.64274   CCAGGCATAAAAAAA           CCGCCAA TAAACTGCT TCGGCGG           TTGATGGTGTCATTT  85 72
CH54_RS09845 2192797 .. 2192837 - -14.1  -3.10611   CTCATTTTAAGAAAC  CATTAGGAAAACTCTGGCA CCT TGCCGGAGTTTTCCTTTTG  TTAGTCACCAAAAAC  95 135
        rplU NONE
        rpmA 2190921 .. 2190943 -   -12  -4.84529   CCAGAAATGTAAAAA           GCCCCGCAAC GAA ATTGCAGGGC           TTACATCTATTTACA 100 54
CH54_RS09825 NONE
        cgtA 2188599 .. 2188626 - -12.1  -3.86015   CATCTGTTTTATAAA        CAAAGGCCACC ATGAAA GGTAGCCTTTG         TTTCAATTCTTTTTT  91 124
        greA 2184542 .. 2184555 -  -9.5  -4.36914   TTTGTTCTGATAAAA               GGCCG CAAG CGGCC                TTTTACTTTTCTTTA  90 92
        rlmE NONE
        ftsH 2181375 .. 2181392 -  -6.9  -5.75538   CTCAAAAAAGAAAAA             CCCCGAG CAAG CCCGAGG              TTTATATTAATCACA 100 66
        folP NONE
        glmM 2179131 .. 2179154 - -12.4  -2.61548   CTTCAGCATAATTTA          CAGGGGAGAG AACC CCCTCCCCCG           CTAAAAAATCATTAT  83 37
        secG 2178547 .. 2178557 -  -3.2  -3.18264   GTTTTTACTGATTAA                 GTCG TCA CAAC                 CACTTTAAAACTTTC  46 75
CH54_RS09765 2178391 .. 2178401 -  -5.4  -2.84504   ACGTGGCAAATATTA                 CGTT GAT AACG                 ACAAAAAAGCAAGTT  52 53
CH54_RS09760 2178279 .. 2178293 -  -7.2  -5.79526   ACATTTGAAAAAAAA               CACTTT AGG AAAGTG               GTTGCGGGGGCCGGA 100 24
        rimP NONE
        nusA NONE
        infB 2173365 .. 2173386 - -15.9   -4.0371   GATTCTCCAGACAAA           TTGGGGGGC CAAG GCCCCCCAA            ATGGATATAAGCAGA 100 51
        rbfA NONE
        truB 2171980 .. 2171991 -  -7.2  -2.53876   CGGGATCGCAAGGTA                GGCC GCTA GGCC                 CTACTCAGCATATTC  59 26
        rpsO 2171556 .. 2171572 - -13.7  -5.24129   GCTTCTTAGAAAAAA              GGGGCCA ATT TGGCCCC              TTTCTCCCGAAACTC 100 47
         pnp 2169171 .. 2169202 - -13.8  -3.48276   CTGCCCTCGAGATAA      CACAGCCCCTCACT CATC AGCAAGGAGCTGTG       GAATACTAATTACTC  95 35
        nlpI 2168160 .. 2168177 -  -4.1  -3.15544   TGTTAGGGTGATTAA             CGTTGGT AAAA ACCAAGG              TATATCAGGCTAATA  48 53
CH54_RS09715 2165993 .. 2166008 - -10.4  -5.76633   GCAGACATAAAAAAA              CCAGCC CGAG GGCTGG               TTTTTTTTAATCATC 100 56
CH54_RS09695 NONE
CH54_RS09690 2161502 .. 2161518 -  -5.1   -5.3104   GCAGCAAAAAGAAAA              GCTGG TGATGAG CCAGC              CTTCTTCATTGGTAT  85 53
CH54_RS09660 NONE
CH54_RS09655 NONE
CH54_RS09650 NONE
CH54_RS09645 NONE
CH54_RS09640 NONE
CH54_RS09635 2146674 .. 2146691 -  -4.8   -3.1085   TGAACGCAGCTAACA             CCCCTG CAACTT CAAGGG              CTAAGGGCATGTATT  53 26
CH54_RS09630 2145542 .. 2145575 -  -8.9  -3.18115   CTTTCACAAAATAAT     CCACCGCCACGTAAT CATA ATGACGTGACAATGG      CGCTCGCCATCAGTG  67 280
CH54_RS09540 2128445 .. 2128456 -  -3.6  -3.14211   ATTGTGTTTGATCAA                GCAG AAAA CCGC                 CTGCACACCATCAAA  46 248
        rraB 2126718 .. 2126742 - -11.5  -3.43689   AAAACGTTATGATAA          TTCAGGGCG TATCAAG CGCCCTGAA          TAATTAGCGGAAACC  85 178
        lptF NONE
        lptG NONE
CH54_RS09490 2118336 .. 2118351 -  -6.8     -6.13   ACAGGCAAAAAAAAA              GCCACC CTGT GGTGAC               TTGATTTACATACTA 100 42
CH54_RS09480 NONE
CH54_RS22220 2114277 .. 2114301 -  -5.6  -3.71873   GCATTGACAGCTAAA          GCGCTGTCCA TGGCC TGGGAAGCGC          GAGGAAAGCCGGCTA  59 373
CH54_RS09465 2109729 .. 2109747 -  -3.1  -3.65351   CCACCTGGACTGAAA            CCACC-CT CGAC AGCGGCGG             CACCCTGTCGCTCAA  51 355
CH54_RS09440 2096068 .. 2096098 -  -6.8  -3.52652   TTTAGCCAATGATAA       TCTGGGTGTCGTTT TTG ACACGATACCCCGA       AGTCCGACTTGAATA  64 155
CH54_RS20785 2095666 .. 2095710 - -10.1   -2.6063   TCTATTCATAATTCA CGGCTCCACCCACAGAGCAAG AGTCA CTTGCCATA-GGG-GGAGCCG CTCATCTCTCTTCCA  72 237
CH54_RS09435 NONE
CH54_RS09430 NONE
CH54_RS09425 2092876 .. 2092904 - -13.2  -3.72695   ATGTGTCGGACCAAA        GCTCACACCTCT CAAAT AGAGGAGTGAGC        TATTTGATATAAATT  95 39
CH54_RS09420 2090937 .. 2090957 -  -8.2  -3.15742   TGATTATCAATAAAT            TTCCCCCG CACAT CGGGGGAG            GATTTATATTATTCA  65 49
CH54_RS09415 2089846 .. 2089864 - -11.7  -2.67696   ATGAGGAATAACCGA             GCGCAGC TTGCG GCTGCGC             TTTTTTTATACTGAG  81 113
        lsrR NONE
        lsrK 2079847 .. 2079860 -  -5.9  -3.34902   TTTGATTATACAATA               CACCG AGAG CGGCG                AGTTGACCGTACCTA  56 260
        rfaQ 2078553 .. 2078576 -  -3.1  -4.74132   ATATGTTATTAAAAA          CAGGCCGTT ATTAAA AACAGTCTG           TTATTAAAAACAAGT  67 55
     waaL-ps 2077197 .. 2077213 - -11.5  -6.26417   TAGTAGAAAAAAAAA              GGCCCCC ATA GGGAGCC              GCGAGTTAGCCTGTA 100 57
CH54_RS09355 NONE
        arcA 2073232 .. 2073255 -  -9.5  -3.67597   GCGCGCAGCTAACAA          CCCTGTGGC TTCAAG GCCGCAGGG           GATTAGTAGTCCACA  79 28
CH54_RS09345 NONE
CH54_RS09340 2068554 .. 2068573 - -13.6  -6.06723   TCGCGCAAAAAAAAA            CAGCCCCA ATAA TGGGGCTG             TTAAGGTTATTTCAG 100 84
CH54_RS09335 2067133 .. 2067162 -  -7.1  -2.78211   ATGCTTGGAAAATAG       GGCTGCCGATGCT GAGG AACACCGGCAAAC        TCAGTCAGTTAGTTT  60 63
        dhaK NONE
        dhaL NONE
        dhaM 2063852 .. 2063876 -  -5.7  -3.92522   GTTTAATTCCACAAA          TAGCAGCCCTA AAT TAAGGTTGCCA          TTTCAAAGCGTTAAG  63 61
CH54_RS09275 2050176 .. 2050190 -  -4.3  -3.20712   AATAAAAGTAGCCAA               CAAAC ATGCA GTTTG               AAGTATAACGGGTAT  51 234
CH54_RS09255 2047484 .. 2047515 -  -2.2  -3.83502   TATTCTGACATTAAA      GGCCGCTTCGAGAT GATT ATTTCAAACCCGCC       TTTCCATGATGGGAT  52 279
CH54_RS09245 NONE
        rimI 2045765 .. 2045775 -  -2.4  -4.66264   GAAAATCGGCAAAAA                 GGCG CTA CCCC                 ATCAGTAAGGCCATC  64 19
        prfC 2043887 .. 2043907 - -13.3  -3.28188   AGGAAAATTCATGAA            TCGGGGCAC GGA GTACCCCGA            TAGAATGCAGCTTGC  93 48
        osmY 2042948 .. 2042987 - -10.9  -2.51312   AACTGACTTATTAAC  GAGTATTTCGC-GGGCTA TATTG TTGCCCCACGAAATACTC  ATCAGCCAGGTAATA  76 42
CH54_RS20780 NONE
CH54_RS09225 NONE
CH54_RS09220 2040392 .. 2040415 -    -6  -2.92858   GGAATCACATTAAAG          TAGCAAGCAA AGTG TAGCTCGCTA           ACTATTAGTGCGATT  56 60
CH54_RS09215 2038959 .. 2038985 -  -7.3  -3.14602   GCCATCTTATCAAGA         CGGCCCTGT GGCAAAATT ACAGGGCCA         GGAAGAAACCGGCAA  63 15
        deoC 2037614 .. 2037647 -  -2.2  -4.93877   GCTTATGAAATAAAA     GCAGCACAGCAGAC AACATA GCCCGCAGTGCATC      TGCTCAGTTCAATGA  67 53
        deoA NONE
        deoB 2034915 .. 2034929 -  -4.2  -3.17229   ATTTCAGCATTAATA               TGTGGC GTT GCCATA               ATTATTTTCCTTAAA  48 85
        deoD 2034161 .. 2034188 - -18.6  -3.36228   CGGATGATAAATAGA        TTCAGCGGCAGA GAGT TCTGCCGCTGAA         GAGAAAAACTCAGTA 100 46
        serB NONE
        radA NONE
CH54_RS09175 2030131 .. 2030142 -  -5.8  -2.72052   AAATCAATTATATCA                GCCA TGTA TGGC                 GATGATAATTTAAAA  51 406
        nadR 2027760 .. 2027778 -  -3.9  -3.53811   CGCAGCCCGGTCAAA            GTGATTGC GACT GCA-TCAC             GCCCAGAGTCAGCCG  52 492
CH54_RS09160 2026155 .. 2026172 - -12.7  -2.56728   ATTATCTAGACTAAG             GGCCTGC AATT GCAGGCC              TTTTTCATAGGAAAG  83 56
        sltY 2018841 .. 2018884 - -16.1  -3.99985   GATATAGCCAAAGAA CTTGGCGTTGCGGCAGGTGT AGCTA ACACC-GCCGCAGCGTCAAG GACGACTAGCCCCCT 100 160
        trpR 2018271 .. 2018283 -  -4.8  -4.29176   ATATCGAATGTAAAA                CACC GAGGT GGTG                CCATCGGCATTTTTA  64 187
        gpmB 2017101 .. 2017121 -  -6.8  -3.17075   CTTCCCTCAAGGGAA            GCCGAAAG ATGGG CCTCCGGC            CTCACTCAAGTGTGA  57 62
        creA 2015360 .. 2015379 -   -10  -5.18726   TGTCTACAATAAAAA            GCCAGCAC TCAC ATGCTGGC             TTTTTTACCCGTCCT 100 236
CH54_RS22060 2014144 .. 2014171 -    -8  -4.03141   ACTATGACGAAAGAA        TATTGATTTTTA ACAA TAAAAATCAACA         AATTAGAAAATTCAT  75 229
        thrL 2013539 .. 2013561 -   -12  -6.11644   TGATTGAAAAAAAAA           GCCCGCAC TGTCTAG GTGCGGGC           TTTTTTCTGTTGTTT 100 45
        thrA NONE
        thrB NONE
        thrC 2008738 .. 2008754 -  -9.4  -4.88222   ACTAAAATGCAAAAA              GGGCCA GTATG TGGCCC              TCTGATTTTTATCTC  93 54
         tal 2006511 .. 2006526 -  -8.2  -5.49234   ATAGGCAATAAAAAA              GGCGGC TTAC GCCACC               TTTTTCGTCAAATAA  93 70
         mog NONE
CH54_RS09075 2004144 .. 2004164 -  -8.3  -3.78233   ACATGAATATCGAAA            GAGCTCATA ATT TTTGAGCTC            TTTTTATTAAAATTG  73 67
        dnaK 1998483 .. 1998524 -  -8.5  -3.04144   TTCCTACCCTTAACA TGCGTGCACGGGCGTAGAG TTTC CTCGACGCCCGTGCTGGTT  CCCAGCAACAGTAAG  67 72
        dnaJ 1997263 .. 1997282 -  -8.6  -6.00814   AATAATGAAAAAAAA            TCCCCGAT ATTT ATCGAGGA             TTTTTAATTTTCATT 100 71
        nhaA 1995873 .. 1995899 -  -9.5  -2.62463   TCCATCAGGTAGAAC         GCCAGTACC TTGACGAGC GGTACTGGC         CATTCAAATATTAAT  70 48
        nhaR 1994634 .. 1994647 -  -9.5  -3.90048   TGCTTCGTAAAAAGA               CCGGC CTAG GCCGG                TTTTTTTATATCTAA  83 126
        ribF NONE
        ileS NONE
        lspA NONE
        fkpB NONE
        ispH 1988147 .. 1988164 -  -8.4  -5.29782   TACACCCATAAAAAA             GCAGCC ACTTAG GGCTGC              TTGATATTGCCGATT  93 56
        dapB 1987027 .. 1987045 -  -8.2   -5.4111   AACAAGTATAAAAAA             GGACAATA AAA TATTGCCC             TGTTATCATATGATT  93 81
        carA NONE
        carB 1982177 .. 1982196 - -13.6   -5.4111   AATAAGCATAAAAAA            GGGCGATG TTTC CATCGCCC             GCTTTCTTACAATCT 100 44
CH54_RS08990 NONE
CH54_RS08985 NONE
        folA 1979335 .. 1979365 - -13.5  -5.44721   AGTATTCCAAAAAAA       GAAAGGCTCATCA ATTAA TAATGAGCCTTTC       TGTCTGATCATATTG 100 50
CH54_RS08975 1978644 .. 1978659 -  -2.6  -4.81863   AAATGTAGAATAAAA              TATCAT TGTG ACGATA               CGTTATCAGAACTAC  65 69
CH54_RS08970 1978323 .. 1978354 -  -8.9  -4.43714   ATAAATTACAACAAA      GATAAAGGTGCAT ACTAAA ATGTACCTTTATC       TTTTATTAGGGTGTC  86 8
        djlA 1970436 .. 1970463 - -12.8  -4.02108   CGCACCAGAATCAAA        CTAGATCGGAAC AGAA GATCCGATCTAG         TTTTGGTTTTGCTAA  93 52
CH54_RS08915 1963110 .. 1963151 -  -7.2  -3.06796   CGGTAGTTGATGGAA CCGCTAACCCCCTGCGGC GTCAAG GCCGAAGGGGATTACCCA  GCAAGAACCTTCCAT  61 19
CH54_RS08890 NONE
CH54_RS08885 1954278 .. 1954299 - -12.3  -5.83226   AAGGTAATAAAAAAA           GCCAGTGGC ATAA ACCACTGGC            TGGTGAAATACACCA 100 81
CH54_RS08880 1952738 .. 1952749 -    -3  -3.72893   CACGCGCCGAGGAAA                TCAA AGGT TTGA                 CTTTCACCTACGAAC  51 206
        leuO 1943819 .. 1943842 -  -5.3  -4.88918   TTATGGCAAACAAAA          TTCAGCGCA GAAGTG TGAGCTGAA           ATAGATTTTGACGAA  77 193
CH54_RS08845 1941840 .. 1941871 - -13.2  -4.62102   AGAAAAACAGCAAAA      TTGGCCGGTA-TCGT CAG ACAAATACCGGCCAA      TGTAGTGAAAACGTG 100 47
        ilvI NONE
        ilvN 1939145 .. 1939164 -  -8.6  -6.44931   AATAAGAAAAAAAAA            GCTCAACA TACC TGCTGAGC             CTAACAATTGGAGAT 100 63
         cra 1937817 .. 1937838 - -11.6  -4.16787   ACAAGCAAACAATAA           TCAGGGCC TAGGAT GGCCCTGA            TTGGCTAAAATGTAG  93 42
        mraZ NONE
        rsmH NONE
        ftsL NONE
CH54_RS08805 NONE
        murE NONE
        murF NONE
        mraY NONE
        murD NONE
        ftsW NONE
        murG NONE
        murC NONE
CH54_RS08765 NONE
        ftsQ NONE
        ftsA NONE
        ftsZ 1919367 .. 1919377 -  -3.2  -2.74122   GTTTAGCACAAAGAG                 CGGA GAT TCCA                 ATTTTTTCGGAAATT  43 39
        lpxC 1918311 .. 1918348 - -13.6  -2.75803   ACAATATTGGAACGA   TTGGCTGCGTTGGC CGGAGAGAGT GCCAACGCAACCAA    AAGTGATAATGATAA  91 47
        secM 1917220 .. 1917238 -  -8.8  -3.31248   CAATATCTCTTACAA             GACCACCA AAC CGGTGGCC             AAAGGTTGTATAAAT  70 62
        secA 1914433 .. 1914452 -  -9.2  -4.69559   AAAGGTCAAAATAAA            GGGCGGTT TTTA AGCCGCCC             TCATCATCAATGCTA  89 57
        mutT 1913520 .. 1913542 - -11.4  -3.05769   GCGGCAAACGAGAGA           CAAATCGGTC GGG AACCGATTTG           AACAGCATTTATGCT  81 423
CH54_RS08705 1910663 .. 1910682 -  -7.1   -4.7373   TCATTTTATTAAAAA            GAGGCGT TGGTTT ACGCCCC             TTTTTATATCAAGAA  83 97
        ampD 1905515 .. 1905527 -  -4.7  -2.54896   TTTGCACTTAACCCA                CCCAG AAA CAGGG                CATATGCCTCCCGGC  47 125
        ampE 1904482 .. 1904498 -    -3  -3.88291   TATTATCTTTAGAAA             GCTGACA ATAT TGTC-GC              TAACGGGCCAGCCAT  53 156
        pdhR NONE
        aceE NONE
        aceF 1896995 .. 1897019 - -13.6  -4.67353   CGACTTATGTAAAAA          CAAGGCCGGC GCGAA GCCGGCCTTA          GCAATTACATCACCA 100 30
        lpdA 1895334 .. 1895353 - -10.7  -5.24129   TGTTTCCATAAAAAA            CGGCCCT GATAAA AGGGCCG             CTTCAGTGTTGCATC 100 65
CH54_RS08635 1890206 .. 1890235 -   -13   -3.6053   GTGGCGATAAATGAA       GCAGAAACAGCC GATAAT GACTGTTTCTGC        TTTAACAAAAGATCC  95 64
        acnB 1887190 .. 1887214 - -15.7  -3.39908   GGGTTTTAAAATAGA          TACGGGAGGCC ATT GGCCTCCCGTC          GGGTGCGGAATATAT 100 45
        yacL 1886546 .. 1886569 -  -7.4  -5.14965   ATTGCCATGAAAAAA          GGCAACG-CCA CAT TGGTCGCCGCC          CTCTCTTACTTCACA  88 162
CH54_RS20735 NONE
CH54_RS08610 1879755 .. 1879771 - -12.3  -4.12456   ATATCAGTCTTAAAA              TCCCGGT CTA ACCGGGA              TTTTTGATTAAGGCA  93 65
        cueO 1875714 .. 1875739 -  -8.2  -5.49579   GTATAAAAAAGAAAA         CCTCCCCGAC CAACTC GCCGGGGAGT          GACTTAAGCGCTGAC  93 29
         hpt 1873812 .. 1873824 -  -7.7  -3.34398   TCTTTGGTTCAAACA                CAGCA CTC TGCTG                GGTGAACTGCCAGCC  64 505
CH54_RS08570 NONE
CH54_RS08565 1871312 .. 1871357 -  -9.9  -2.66272   TCCGATCCAAAGTCA CT-GACGTTGCAGAGGTG AATACAGCCAA CACCGCTGCAACGTCCAG GCCGAAAAACATCCC  70 160
CH54_RS08560 1869739 .. 1869759 -  -8.3  -5.55769   CCGCACAATAAAAAA            GGCGCTT ATAATTA AAGCGCC            TTTTTCCTATCTTCA 100 75
        hrpB NONE
        mrcB 1856753 .. 1856779 - -10.2  -4.98531   CGGGGAAACGAAAAA         TTGGCACGATAA CAG TAACCGTGCCAA         TTTTTTGAGTATTAC  93 37
        fhuC NONE
        fhuD NONE
        fhuB 1852783 .. 1852816 - -14.8  -2.84723   CTTTAATATCAATTA     CTTAACCATCTCCC TATGCT GGGAGATGGTTAAA      ATCTAACTACCGCCC  95 32
        clcA NONE
        erpA 1849153 .. 1849173 -  -3.2  -6.30182   TCAGATAAAAAAAAA            CCACGACT ATGAA AGTTGCGG            TTTTTTTTATCAAAA 100 180
         dgt 1844527 .. 1844558 -  -5.9  -3.54424   GGTCATGCTGGCAAA      CCCGATAATCTAA CTCAAT TTAGTTAATCGGG       TGAATGCGAACCGCT  58 202
        degP 1842901 .. 1842926 -  -7.5  -5.38054   GGGCATAAATAAAAA         GGGCACAGC AATAAACA GCCGCGCCC          TTTGTTACGATATTT  93 83
CH54_RS22050 NONE
        relA 1836883 .. 1836895 -  -4.1  -2.52543   AGCCCCCGGAATGTA                CACGT AGT ACATG                AGGAGGGCGAGCACT  44 89
        mazG 1835825 .. 1835841 -  -3.7  -3.85698   TGGTTTCGCTACAAA              CACTC TCCGCAC GAGTG              GCCATTTTTGCCGTT  57 136
        pyrG 1834064 .. 1834091 - -13.4  -2.94938   CTAAAACTCCAGACA        GAGGGGGCGACA TCGC TGCCGCCCCTTC         TACCAAATATTTTAT  91 37
         eno 1832545 .. 1832572 - -12.8  -2.63596   TCTTATCTGACATTA        GCGGAGAATATC TTGC GACACTCTCCGC         TAATTTTAACGCGAA  83 181
CH54_RS08410 1829850 .. 1829866 -  -5.8  -4.00042   TCCCTTATTAAATAA              GACCAC GGACA GTGGCC              CAATATAAGCCACGG  65 1
CH54_RS08405 1829147 .. 1829160 -  -5.9  -5.00884   AGCGCGTTCAAAAAA               GCGAC CCAC GCCGC                CATGCCGCCTTCCAG  81 291
CH54_RS22045 1828878 .. 1828899 -  -3.7  -3.55145   AATCATTAAGGATAA           CG-GCTGATA AGT TATCTGCACG           GCAGCAGTGCAAGAG  52 113
        sodC 1828257 .. 1828278 -  -4.4  -3.72576   CTGGCTGCGACCAAA           CTGGCAAC ACCGAG GCTACCAG            TTTGTTTGTATCAGG  56 44
        queE 1827485 .. 1827505 - -11.1  -3.51411   ATTCGGGTAAATGAA            CGCCGCAAC ACA GCTGCAGCG            ACAAGGCCGAAGGGG  82 42
        cysJ NONE
        cysI NONE
CH54_RS08375 1822312 .. 1822334 -   -12  -5.00616   TTTTGCCGCAAAAAA           TAAGGGCGCT ATG AGCGCCCTTT           TATCTCTCTGTCACA 100 42
        cysG NONE
        cysD NONE
        cysN NONE
        cysC NONE
CH54_RS08345 1815865 .. 1815875 -  -8.2  -2.85699   AGTGACCCATGAAAT                 GGGC TTT GCCC                 GTGATGTTGCCGATC  62 224
        ftsB NONE
        ispD NONE
        ispF NONE
        truD NONE
        surE NONE
CH54_RS08300 1809039 .. 1809061 -  -2.8  -3.12936   AGTCAAAGGTTAAGA           CTGAAATAAT GAT ATTTTTTCAA           GCCAATTCCCCTTTA  44 22
        nlpD NONE
        rpoS 1806803 .. 1806822 - -12.2  -5.64274   TTAGCCATAAAAAAA            CGGTGAAC ATCA GTTCACCG             TTTTTATGTTTTCTC 100 49
CH54_RS08270 1800525 .. 1800548 - -15.4   -5.0916   TTCTCAAGAGAAAAA          GACATGCGGA AAAA TCCGCATGTC           GAATTAGAAAATGAT 100 43
CH54_RS08265 NONE
CH54_RS08260 1797333 .. 1797350 - -10.5  -3.40403   TTTCTCTTATTAGAA             CCCGCGG TTAT CCGCAGG              TTCATTACCCAAGCT  77 43
CH54_RS08255 NONE
CH54_RS08250 NONE
CH54_RS08245 NONE
CH54_RS08240 1794828 .. 1794847 -    -5  -4.90778   CTTATTGAAATAAAA            TTAGTGGG GGAA CCCATTAA             TAATATTGCAGATTA  77 22
CH54_RS08235 1793776 .. 1793786 -  -6.8   -4.7908   AAAAACACAAATAAA                 TGCC ACG GGCA                 CCCACTGCCATAATA  81 158
CH54_RS08230 1793313 .. 1793349 -  -7.3   -4.7923   ATTTAAAGAAATAAA    TCAGGCAAGTACAGAAA TCC CTCCCGCACTTACCTGG    GATACTTTTAAATAT  83 73
CH54_RS08225 NONE
CH54_RS08220 1791526 .. 1791550 -  -3.7  -2.52543   ATTCTTTGTAAGTGA          CATTATTCATT AAT AAAAAATAATG          AATGTGAGTGCCATA  44 3
CH54_RS08215 NONE
CH54_RS08210 NONE
CH54_RS08205 NONE
CH54_RS08200 NONE
CH54_RS08195 NONE
CH54_RS08190 NONE
CH54_RS08185 NONE
CH54_RS08180 1781671 .. 1781686 -  -7.6  -2.79302   ATGACTTTGATGACA              TTGCCA TCCA TGGCAA               CTTTCATCACGCCGT  60 32
CH54_RS08165 1778735 .. 1778763 - -11.7  -2.85458   AAATAACAAACCAAG        CCGCCAGTGGA TCATGTT TCCGCTGGCGG        TTTTTTATTGGCGAG  81 176
CH54_RS08155 1775870 .. 1775893 - -10.4   -3.3482   TAACCTGCCAATCAA          GGGCGGTTGAT ATC AT-AACCGCCC          TCAACTCACTCCGGC  77 31
        dmsA NONE
        dmsB NONE
CH54_RS08055 NONE
        dmsD 1752756 .. 1752771 -    -9  -5.29445   TTTTAATAAGAAAAA              CCCATC AGAA GATGGG               CTTGAAGAGATGAGC  93 45
        pncC 1750543 .. 1750562 -  -5.8   -2.8076   AATTACCACTAATTA            TACTGTAC AATC ATACAGTA             TCAAGACTAATTTTG  52 32
        recA 1749329 .. 1749351 -  -9.8  -4.28994   CATCATTTACTAAAA           CGGCCCACGT ATT AGGTGAGCCG           CATGTTAACTACTTA  89 71
        recX 1748538 .. 1748558 -  -2.6  -4.23674   TGGGACTAAGATAAA            TTTTCTTC GAGGG GAAGTAAA            ATCCTGTGTGCATTC  57 39
        alaS 1745751 .. 1745777 -  -7.3  -4.88222   AGGAAAATTGAAAAA         CGCCATACCCA ACATA CAGATATGGCG         TATTGATTTAATAGG  85 52
        csrA 1745326 .. 1745360 -   -15  -3.75817   GGGGGAGAATAAACA     GCAGTAGCGCCTCGTG TAA CACGAGACGCTTCTTC     AAAATCAGTAAGTCG 100 30
CH54_RS08015 NONE
CH54_RS08010 NONE
CH54_RS08005 1744685 .. 1744695 -  -3.2  -3.37975   ATTGATGACCTAGAA                 GATG GTG CACC                 CAGGAAGATTCGAAC  48 17
CH54_RS08000 1744511 .. 1744526 -  -8.2  -4.72556   CTAAAAAGCAGAAAA              CCCCGC CGTA GCGAGG               TTTCTTAATATGGTG  84 36
        yqaB NONE
CH54_RS07990 1743271 .. 1743293 -    -2   -2.9348   CTGAAACTGCATAGA           TGTGACTA TGTAAGT TTGTCACA           CTCTTTACTGCCACC  42 30
        gshA NONE
        luxS 1740912 .. 1740928 -  -5.8  -5.38047   GACGGACATAAAAAA              GACGCC TTTGC AGCGTC              TTTTTTGCATTTATC  89 70
         ffh 1736934 .. 1736967 - -18.3  -4.67982   CTTTAGTTAATAAAA     CAACTGGACCCCATC GGGG AACGGGGTCCAGTTG      CAATATAAAAAGCCC 100 267
        rpsP NONE
        rimM NONE
        trmD 1735258 .. 1735269 -  -4.4  -3.65902   CTTACCCTAGGTAAA                CTGA TATA TCAG                 GAAGTTGGCACACGG  56 69
        rplS 1734814 .. 1734836 - -15.6  -6.04953   ATAGAAATAAAAAAA           GGGGTCAGCC AAT GGCTAACCCC           TTCATAACTATTAAC 100 66
CH54_RS07925 NONE
        tyrA 1728754 .. 1728778 - -13.5  -4.28254   CCTTAATAGTCAAAA          GCCACCTCGAC ACT GCCGGGGTGGC          TTGGGGAAAACAGAT 100 57
        rluD NONE
        yfiH 1723922 .. 1723932 -    -4   -3.5032   TTTTGACACTAAATA                 TTCA AAA TGAA                 ATGTTATGCGCCAAT  52 62
        clpB 1721229 .. 1721248 -   -15  -5.35365   AAAAGACAACAAAAA            GGGGGCGA TTTC TCGCCCCC             TCAAGCATTAACCAT 100 40
CH54_RS07885 1719082 .. 1719098 -  -3.7  -2.55668   GATGGGGACACGAAG              TTCCGAT TAA ACCGAAA              TCTAACCGTTTCGCA  44 138
CH54_RS07880 1718928 .. 1718965 - -10.9  -3.45839   ATTGTTAAAGAGCAA   TATCTTAAACACGACTT GGTA AAGTCATCTTTAAGATA    TTCAGTTGATAATGT  82 60
CH54_RS07875 1715766 .. 1715776 -  -6.8  -4.39386   CTCAAATCACCAAAA                 CACC TTC GGTG                 TTGTAAGGTTAAGCC  76 30
         rrf 1715494 .. 1715506 -  -6.9  -4.18018   CCGCGCTATGCAAAA                CCGCC TTT GGCGA                TTTTGTTAGTCACCA  73 69
CH54_RS07865 1715312 .. 1715336 - -17.3  -4.74103   GTTGGAATGCAAAAA          GACCCTGAATC TAG GATTCAGGGTC          TTTGCAATAAGTGGC 100 37
        dkgB 1714154 .. 1714171 -  -9.1  -5.86976   CTACAAAATAAAAAA             CCACCCC ATGT GAGGTGG              CTCAGTTTATTGCTG 100 44
CH54_RS07850 1711780 .. 1711797 -  -9.8   -3.7829   ACGATATTGATGAAA             CGGGGC TAAAGC GCCCCG              GAAAAAGTTCTGGCA  79 166
CH54_RS07840 1709601 .. 1709616 - -10.4  -4.60924   TAAAGCTGTTAAAAA              GCACCC TTAG GGGTGC               TTTTTTTATGGCCGA  91 31
CH54_RS07825 1706499 .. 1706540 -  -5.3  -3.76186   CATCCAGAAAACGAA CGCTGCGATGAATTGGCGC GCGAAG GCGCAAATTCACCG-A-CG ATGGAAGATACCGGG  59 71
        dnaQ 1705239 .. 1705250 -  -2.2  -3.14672   TTCCAGTAAAATAAG                CCGT TTGC ACAG                 TTTTCCATCTGGATG  43 46
CH54_RS07810 1705042 .. 1705075 - -16.9  -3.64466   AGGGTATAGATACAA     CGAAGCCCTGAGTTA GCAA TAACTCAGGGCTTCT      GAATGTTGGCGGTGC 100 32
CH54_RS07765 1694300 .. 1694310 -  -5.4  -4.39998   TATGTACATAATAAA                 CCTT GGC AAGG                 TGTCGGTATTGGTGC  69 213
         asr 1693453 .. 1693476 - -16.8    -5.626   TAGCCTATAAAAAAA          GACACCCGGT ATTA ACCGGGTGTC           TAAAGTTGGCTCGAC 100 75
CH54_RS07740 1692254 .. 1692266 -  -2.7  -3.76224   TCTTTATCTACCAAA                CCTTT ATC AAAGA                CCCTTCCGACGAAAA  51 272
CH54_RS07725 1690926 .. 1690949 -  -8.9  -5.64873   CGGAATAATAAAAAA          GCCACATTC AACTAA GAACGTGGC           TTTCTATTACAGCGA 100 64
CH54_RS07715 NONE
CH54_RS07710 1688904 .. 1688914 -    -4  -4.08823   ATTAACATAATGAAA                 CTAT TTA ATAG                 TGACTTATATTAAAA  59 91
CH54_RS07705 NONE
CH54_RS07700 NONE
CH54_RS07695 NONE
CH54_RS07690 NONE
CH54_RS07685 1683201 .. 1683216 -  -3.2   -4.4521   ACTATTTAAAAATAA              CATGAC CCTA GTCAAG               ATATTTTTAATTTTA  62 124
CH54_RS07675 NONE
        ureB 1681477 .. 1681490 -  -3.9   -3.6502   TAGTTGTTAGCTAAA               TAGTT TTAT AACTA                AATACACGTATGCGA  54 70
CH54_RS07665 1679630 .. 1679645 -  -7.6   -3.7347   CTGAATACTTAAGAA              CTGGAT TTAC ATCCAG               ACTCATCCGTTAGCC  68 99
        ureE NONE
CH54_RS07655 NONE
        ureG NONE
CH54_RS07645 1676318 .. 1676339 -  -8.7  -2.65279   GAAGCTGTAAATGCA           TGAGGCCGA TGAC TCGGCCTAA            GCTCTTAGCGCCACA  65 30
         yut NONE
CH54_RS07635 1674177 .. 1674193 - -12.3  -5.24531   ATTTCTTATAAAAAA              GGCGCTT GAT AAGCGCC              TTTTTATTAAATTAT 100 43
         kch 1672249 .. 1672267 - -13.2  -4.88736   TACCAGGCATAAAAA             CACCCTCA TGA TGAGGGTG             TTTTTATACATCTGA 100 54
        mgrA 1670133 .. 1670150 - -11.3  -5.05782   ATTCACTCTAAAAAA             GCCGGAA AATC TTCCGGC              TTTCACATTATCACT  95 62
CH54_RS07600 1668026 .. 1668038 -  -3.3  -3.21837   AGAGAATTAATAAAT                GCGCT CAC AGTGC                TCCCCTTATTGTTTT  46 31
        chbC NONE
CH54_RS07590 NONE
        chbA NONE
        chbR NONE
        chbG 1663109 .. 1663125 -  -6.5  -6.02919   CCACAAACAAAAAAA              CCTGACT AAA AGTCTGG              GATTTTCATTTTTGG 100 79
CH54_RS07540 1657180 .. 1657190 -    -4   -5.1244   GGAGGAATATAAAAA                 TCAA CAA TTGA                 AACTAAAAACCATGT  74 169
CH54_RS07525 1653495 .. 1653522 -  -8.4  -2.82895   GGGTTGAGTAAGAAT        CGACACGGCAAG GTAT CTTACCGCCTCG         CTAAAAAATGCCCAT  66 301
CH54_RS07520 NONE
CH54_RS07515 1649093 .. 1649110 -  -7.1  -3.17194   ACCCGGCTAAGGGAA             TCTATTG TCTC CAATAGA              TGCAACGCTATGGGA  63 33
CH54_RS07510 NONE
CH54_RS07505 NONE
CH54_RS07500 1642811 .. 1642825 -    -5  -4.17762   CACTCGTGAAAATAA               TACTGC TAT GCAATA               TTTGTTTAACCAGTT  64 365
CH54_RS07480 NONE
CH54_RS07475 1638924 .. 1638944 -  -8.3   -5.4505   GGCTGCAACAAAAAA            TAAGGCGCA GAT TGTGCCTTA            TTTTTTTGCTTGTTC  95 23
        grpE 1634964 .. 1634981 -  -9.1   -5.8901   AGAGAAAATAAAAAA             GGCACCC ATCA AGGTGCC              TTTTACCTATCAGGA 100 46
        grcA 1633443 .. 1633461 - -11.7  -5.85737   ACAGGAACAAAAAAA             GGGAGCC GAAGA GGCTCCC             TTAACATTTTCAAAT 100 75
CH54_RS07435 1630706 .. 1630743 -  -7.8  -3.19175   CCGTAATACATTTAA   GGGCGCAATATTTTTT GCGAAT ATAGAATATCGCGCCC    TCCAGCACCATTTCC  65 58
        rpoE NONE
        rseA NONE
        rseB NONE
        rseC 1625889 .. 1625907 -  -4.7  -3.74251   TATAGTGCGAGGAAA             TGATTTT TGGTC AAAATCA             CTCCTATTTAATGTC  57 319
        lepA NONE
        lepB 1622015 .. 1622027 -  -2.7  -4.35461   CCAATATTACCAAAA                CAAAA CTG TTTCG                TTTGCAGTGGCCCCC  60 175
         rnc NONE
         era NONE
        recO 1619492 .. 1619511 -  -7.8  -3.22777   TTTGATAGATTAATA            GGCATGCA AGAA TGCTTGCC             AATAAACGCGTAAGT  65 131
        pdxJ NONE
        acpS 1618275 .. 1618297 -  -8.5  -5.61913   AATAAAGACAAAAAA          GGGCG-GTAT TTTC ATACTCGCCC           TTCCATTCCCGTTCA 100 67
        gntP 1616514 .. 1616543 - -14.5  -3.90112   TTCCTGTGAAGTAAA       TTATCAGTGCCTC CGCA GAAGCACTGATAA        TAAAATCAACTCAAA 100 47
CH54_RS07345 NONE
        murQ 1612684 .. 1612704 -  -7.5  -4.36343   TAACTAATCAATAAA            TACGGGGGG CAT CGCCCCATA            CAAATCAGCCTTACA  78 36
        yfhb 1611510 .. 1611522 -  -3.3  -3.41051   GCATTGGCATTACAA                CCACA ACT CGCGG                CACGTCGGCTGGACA  48 456
        tadA 1610042 .. 1610063 - -13.1  -3.15544   GCTCATCGGTATTAA           TGAGCCTCA TCCT TGAGGCTCA            CCCTGCGGGCTAGCA  91 122
        purL 1604296 .. 1604328 - -15.1  -3.23733   TGCATTGTATAAAAG      TAAAAAAGGGCATCA ACC TGATGCCCTCTTCTA      TTAAGTCCATTTAGC 100 36
CH54_RS07310 NONE
        qseG NONE
        glrR NONE
CH54_RS07295 NONE
        glnB 1596809 .. 1596835 -  -8.8  -6.02919   TTAGAAATAAAAAAA        GCCCGTATCGT TTTGTG ACGAT-CGGGC         TTTCTTATTGGATAA 100 51
CH54_RS07270 1592081 .. 1592095 - -11.4  -5.71983   CTAATCACAAAAAAA               CCCGCA TTG TGCGGG               TTTTTATTAGAAAAA 100 56
CH54_RS07265 1590417 .. 1590437 -  -5.4  -3.14132   CCCGGCTGTTACGAA           CCACTCAGC AAGC GCTG-GCGG            CGTTCGAACAAGAAT  52 390
CH54_RS07255 NONE
CH54_RS07250 1587657 .. 1587680 -  -8.9  -4.81551   GATGCACATTAAAAA          GCCAGTC-GG CTAAC CCTGACTGGC          TTTTTTTATTGTGAG  89 43
        trmJ 1585910 .. 1585923 -  -5.3   -3.7941   CAGTTTCTATAATAA               CCAAT TGAT ATTGG                TCATTAATTTTTGTT  61 29
        iscR NONE
CH54_RS07230 1583997 .. 1584007 -  -5.4  -3.36983   AAAATCTGGAATTAA                 TGGT GCG ACCA                 TTCAATGCTGCTGAT  56 11
        iscU 1583576 .. 1583586 -  -3.2  -3.33969   TAACCTATTTTACAA                 CTAC TTG GCAG                 TATGTTTGCTTTTGT  48 15
        iscA 1583099 .. 1583115 - -10.9  -3.21354   GTATATAGGCATCAA              GTTCCTG AGG CAGGAAC              AAAAACAGGGGTCAG  79 37
        hscB 1582329 .. 1582345 -    -5  -3.03309   CTCTAATAAGAAGTA              GCCGCG CATTT CGCGCC              ATCAATAAATTTATT  51 87
        hscA NONE
         fdx 1579934 .. 1579967 -  -3.7   -2.6732   CGGCAAGTGAAAGAG     TCCCGATGAGCTTAC TGTT GTAAGCGATTCGGGT      GATTGAACGTAGCCA  45 74
        iscX 1579645 .. 1579662 - -10.5  -5.55695   TAACAATAGAAAAAA             GGGCCGC TCGT GCGACCC              TCAGGTATTTATTCA 100 34
        pepB 1578157 .. 1578174 - -10.5  -4.24887   AATAGATCGAACAAA             GGGACGC AAAT GCGCCCC              CGAGACTCTTTTCAA  89 54
        sseB 1577202 .. 1577220 - -14.6  -4.83615   TATCTGTCATAAAAA             GGGAGCCA AAT TGGCTCCC             TTTTCTCATTAATGG 100 34
CH54_RS07180 1567208 .. 1567248 -  -3.9  -2.78495   TTAGCATCAAGACTA  TTTCGCTCCCCTTTTACCG GTA CCGCAAAAGGGGAGTAAGT  GTTTACTTCACTATT  46 28
        pbpC 1564657 .. 1564667 -  -2.6  -2.78725   ATATTTTATTAATTA                 TAAT GAA ATTA                 CATTATTTTATTATA  42 221
CH54_RS07170 1561953 .. 1561967 -  -4.2  -2.78384   TGGCCGCCGATTATA               TGTGCG CGC CTCACA               CTTGCCTACGGGAAT  46 173
         ndk 1561242 .. 1561271 - -19.3  -3.96154   GAATAAATAATAGAA       CGCCCCAGCGGAG TTGT CTCCACCGGGGCG        CGGCATTGTACGAAT 100 135
CH54_RS07160 NONE
        pilW NONE
        rodZ 1557892 .. 1557909 -  -6.3  -3.33815   AGTTTTCGCAACTAA             GTGGTCT TCCA AAACCAC              GATCTTTCTCAAGAC  60 103
        ispG 1556675 .. 1556689 - -12.8  -4.19624   CAGGCTCAATATAAA               GCGGGC CAC GCCCGC               TTTTTTGTATTCATC 100 63
        hisS NONE
CH54_RS07130 NONE
        bamB 1553162 .. 1553192 -   -17  -3.21924   GCAGTTTTTAGAATA       CAAACGGCCCCTGA ACC TCAGGAGCCGTTTA       AAAACCTTTGTCCTT 100 117
         der 1551567 .. 1551598 -   -16  -3.33744   GGGTGCGCTAAAAAT      GCAA-AAAGCGCGGG ATG CCCGCGCTTTGCTGC      TATTACTTACCTTTT 100 28
CH54_RS07115 1550544 .. 1550556 -  -4.7  -2.71061   TAAAAACTCACATTA                CGCCC AGT GCGCG                TAAGAAATAAATCCC  47 5
CH54_RS07110 1550167 .. 1550189 -  -5.6  -3.10493   GCGGCAAGAGAGAGA           CAAATTGGTC GGG AACCGATTTG           AACAGTATTTATGCT  54 118
        guaB 1546951 .. 1546963 -  -3.5  -4.40561   CGCTTTTAAAAATAA                TTAAT TAA ATTAA                ATGGTTACCAGAGTC  62 164
        guaA 1545284 .. 1545305 -  -9.4  -4.64992   CGTAAAAAAGAGAAA           GCCCCCTG ACAATG CAGAGGGC            TTAAGGTTTTTTCTA  91 72
CH54_RS07090 1543826 .. 1543840 -  -3.5   -4.3534   GCTTAATGATGAAAA               GCCTG TTGCT CAAGC               TATACGGATGTTGAT  63 102
CH54_RS07030 1536881 .. 1536898 - -10.5   -5.4492   TATACACATAAAAAA             GGCCGCC TGCT GGCAGCC              TGTTAGCTTTCTGTC 100 47
CH54_RS20675 1536574 .. 1536585 -  -2.2  -2.87931   GTTATGTGTCATATA                GCCA CCGC TAGC                 CCATTGGCTTGTGCC  41 7
CH54_RS21225 NONE
CH54_RS20285 NONE
CH54_RS07005 1534498 .. 1534520 -  -2.7  -5.47159   TTTCAACATAAAAAA          CGCG-CTTGC TGTC GCAAAACGCA           CTATGCTCTAAAACT  78 114
CH54_RS07000 NONE
CH54_RS06995 1533742 .. 1533757 -  -3.2   -2.5547   ATTGGCGATATCAAT              GCTATC CATG GTTAGC               TCCCATGCCGTGGCG  42 11
CH54_RS06990 1533513 .. 1533527 -  -2.9  -2.78508   TACCGTTGAAAACAT               TGAAA TTTAT TTTCA               TTTCAACTCGTTACT  42 39
CH54_RS06985 NONE
CH54_RS20280 1532152 .. 1532164 -  -5.5  -3.65314   TTGAATCGCCAATAA                GTAGG CAA CCCAC                TTCTTTTCTGCTGCT  60 58
CH54_RS06975 1531506 .. 1531519 -  -9.5  -4.77867   ACAGACAACAGAAAA               CCGCC AAGC GGCGG                TTATAGATGCTTGCT  93 48
CH54_RS06970 NONE
CH54_RS06965 1529317 .. 1529328 -  -4.4  -3.03619   AATTAGCCCCCAAGA                CAAG CAGC CTTG                 CAGTTGAACCACTTA  47 134
CH54_RS06950 NONE
CH54_RS06945 NONE
CH54_RS06940 NONE
CH54_RS06935 NONE
CH54_RS06930 1524217 .. 1524232 - -10.4  -3.01712   TCTCTCCTTTGAATA              GGCCAC GGTT GTGGCC               CATCAGTTAAGGTCA  75 45
CH54_RS06925 NONE
CH54_RS06920 1523341 .. 1523354 -  -9.5  -3.42013   ACTCCAGAAGAGTAA               GGGGC CGAA GCCCC                TTTGTGGGTGGGTTA  75 38
CH54_RS06915 NONE
CH54_RS06910 NONE
CH54_RS06905 NONE
CH54_RS06900 NONE
CH54_RS06895 NONE
CH54_RS06890 1516406 .. 1516425 -  -2.2  -2.60244   TGCCGAAGTAACTCA            TTGT-GGAA TAT CTCCTACAA            AGCGTTGTTTCTCTC  40 3
CH54_RS06885 NONE
CH54_RS06880 1511951 .. 1511969 -  -3.2  -3.80276   AGCCAGATAATATAA             TGCAATAA CGT TTACTACA             GGGATTAGTAGCAAT  54 172
CH54_RS06870 1511544 .. 1511557 -  -9.5  -4.02334   TAGTTAGATTATAAA               GCCCC TCAC GGGGC                TTAAAGTGCATCAAT  86 42
CH54_RS06860 1508823 .. 1508845 - -10.6  -5.03314   TGGATGTGTAAAAAA           GCCGCAAC ATGCATA GTTGCGGC           TAAGCGTATGATTGT  93 83
CH54_RS06855 1507585 .. 1507626 -  -9.6   -2.9462   TAGTCACCTAAACTA TGCATCATGTAACCCTCA ATTAAA TGGTGGTTACATGATACA  CAATCAAATCAAATA  72 71
CH54_RS06850 NONE
CH54_RS06845 NONE
CH54_RS06840 NONE
CH54_RS20270 1505890 .. 1505907 -  -9.1  -6.01725   AATAAAAATAAAAAA             CCCCCGA AATA TCGGAGG              TTTTATTTATATCAG 100 181
CH54_RS06830 1503797 .. 1503812 -  -7.6  -3.85567   AAGGGTAAAGTTAAA              TGTGAC GCAA GTCACA               TTTTGTAACTATGAT  71 34
CH54_RS06825 NONE
CH54_RS06820 NONE
CH54_RS06815 1500081 .. 1500096 -  -8.2  -4.40804   TAGCATGTGATAAAA              GGGAGC CAAA GCCCCC               TTATTCTTCTTCATT  80 39
        thiD 1499025 .. 1499057 -  -7.1  -3.62046   TTACTGGCGTAATAA      TTTCATCGACTTCAG CCT CCAAAGTCAATGGAA      TTGCAACCAGACAGC  68 68
CH54_RS06795 1497142 .. 1497154 - -10.5  -3.03124   CGGCACTTTGCAACA                GCCGC TCG GCGGC                GCGATAACTCGCCCG  72 257
CH54_RS06680 NONE
        pstA NONE
        pstB 1461890 .. 1461904 -  -8.6  -4.05321   GATAAATAAAGAGAA               CACCTT AGA AAGGTG               GAGTGGTCTGCTATG  79 59
        fliB 1460187 .. 1460197 -  -4.6  -3.80014   ATATTCATGATCAAA                 GCGA ACG CCGC                 TTTATTATTGAAAGC  59 431
         upp 1457161 .. 1457178 - -11.3  -5.82316   ATTATTCAAAAAAAA             GCCGACT ATCG AGTCGGC              TATCTAGAAGTTATT 100 36
        uraA 1455767 .. 1455797 -    -9  -4.62336   ATCTGAGGCGAAAAA       CTGGCCGAACCG ACAAACG CAGCTCGACCAG       CAATCACTTTATTTC  88 34
         hda 1454793 .. 1454804 -  -5.8  -3.48772   AACGCGCTGACACAA                CAGC AATT GCTG                 CAAGCCATGAGTGAT  59 195
CH54_RS06620 1451430 .. 1451445 -  -6.8   -5.1361   ATAAATTGCAAAAAA              GAGCGC TCAA ACGCTC               TTTTTTATTGGCAAT  85 178
        dapA NONE
        bamC 1448189 .. 1448202 -  -9.5  -4.48176   CATAAAATGAATAAA               GGGGC CGAA GCCCC                TTTTAGGTATTATTG  90 35
CH54_RS06595 1447235 .. 1447263 - -14.8  -4.09963   GGGGAATAAGAAGAA        TAAGGGGAGATA GAGGT TATCTCCCCTTA        TACCCGTCATACTTC 100 188
CH54_RS06590 1446193 .. 1446211 -  -8.8  -2.84098   CCTTGCAATGAAGTA             CCGGCG ACGAGTG CGCCGG             CAAAAAGTTTTCTTA  66 75
CH54_RS06585 1445657 .. 1445684 -  -7.6  -3.80573   CTGAGCACCAGTAAA        CGCCGATGTCCC TGCT GCGCCATCAGCG         CTTGGCTGGCGATAA  71 55
CH54_RS06580 1443604 .. 1443626 -  -6.3  -3.83323   TGCAGAGAATTGAAA           GAGTGGCAT TGTTC ATCCCACTC           TTGGGAATTCATGCA  66 42
        ypfH 1442419 .. 1442429 -  -6.8  -3.44848   GCCCTTTAGCAAAGA                 CACC GGC GGTG                 TTGCCGCAGAGCCTT  61 462
CH54_RS06550 NONE
CH54_RS06545 1438255 .. 1438272 -  -8.4  -5.56263   ACCAGAAAACAAAAA             GGCCAC GTGATT GTGGCC              CTCCCGCGTACCGAA 100 68
CH54_RS06535 1436179 .. 1436211 -  -8.3  -2.96271   ACAAAGGGTAAATCA      GGGGTGCGCACCGCC ATC GGCAATACGCACCAG      AGGAGGCCTTTATTT  67 35
CH54_RS06530 NONE
CH54_RS06525 1432971 .. 1432994 -  -9.6    -5.252   GACGGGCATAAAAAA          GGCAGAAGCT ATAA AGTTTCTGCC           TTTCTGCGAGCGAAG 100 330
CH54_RS06515 1428936 .. 1428960 -    -8  -3.19602   TTCCCGACACGAACA          GGTTAATCCA TTCTC TGAATTAACC          GAGCGGGAATTAGAT  62 369
        napF NONE
        napD NONE
        napA 1424760 .. 1424773 -  -2.3  -2.82623   TCTTTTGCACAATCA               CGCAA CAAC CCGCG                CCAATTTCACTGCGC  41 9
        napB 1424268 .. 1424278 -  -6.8  -4.28548   ACTTATTGACCAAAA                 CCAG GTG CTGG                 CTGGAAGCTATTACC  73 2
        napC 1423548 .. 1423576 - -11.8   -5.5353   TATAGCAATAAAAAA        TGCTCTGTCGAC ACGCA GTCCACAGAGCA        TTTGATTCGGGTTAA 100 77
CH54_RS06480 NONE
CH54_RS06475 NONE
        nudK 1422288 .. 1422305 -  -9.1  -2.67017   AATGGGAGAATTAAG             TGCCGCG AAAT CACGGCA              ACAACATAGCGCTGT  67 60
        maeB 1419816 .. 1419830 -  -5.6  -5.26316   TCATTTCACAAAAAA               CTACCG AAG CGGAAG               AGGTTTTATAGTGGC  85 31
CH54_RS06450 1417426 .. 1417448 - -11.4  -3.74526   GCAGCAAGTGAATAA           CAAATCGGTC GGG AACCGATTTG           AACAGCATTTATGCT  88 202
CH54_RS06440 1415989 .. 1416003 -  -5.8  -2.73875   CGCGCCTTAACAGGA               GAATAA TAT TTATTC               GCTTTTAGCACGCCA  51 20
CH54_RS06435 1414878 .. 1414893 -  -8.2  -4.48449   TCACCAAAAGATAAA              GGCCGG GAAA CCGACC               TTTTGTCATTCAGAA  80 50
CH54_RS06420 NONE
        nanQ 1411450 .. 1411465 - -11.8  -5.85737   AGATCAATAAAAAAA              CCCCGG GGGT CCGGGG               AAGATGTCAAAGATA 100 65
CH54_RS06410 1410262 .. 1410274 -  -7.7  -4.80289   ACAAAATACATAAAA                GGAGT AAA ACTCC                ATTTGAGTGTATAAG  84 200
CH54_RS06405 1408530 .. 1408551 -  -8.7  -5.06414   TCTGGTCAATAAAAA           GCCCGGC-CA ACC TGCACCGGGC           AATAAAAAGTCATTA  90 43
CH54_RS06400 NONE
        cysT NONE
        cysW NONE
        cysA NONE
        cysM 1403497 .. 1403509 -  -9.1  -3.14132   TTTTGGGTTCATCAA                GGGGA AAA TCCCC                TTTAATTACTCAAAA  70 31
CH54_RS06375 NONE
CH54_RS06370 1400993 .. 1401010 -  -9.8  -4.29325   TACGAATATGGAAAA             CGGCGC CTTTGT GCGCCG              TTTTTGTTTGATAAT  89 41
        zipA 1394611 .. 1394627 - -10.8   -5.5762   ATCAAAGATAAAAAA              CCCCCG GCATG CGGGGG              TTCGGGTTAATTCAA 100 61
        ligA NONE
CH54_RS06330 1392279 .. 1392311 - -13.6  -2.93795   CTTAAAAAACAAGAC     TATGGCGATG-ACGG GCAT CCGCCCATCGCCATA      TTTTAGAATGCCAGA  93 41
CH54_RS06295 NONE
CH54_RS06290 NONE
CH54_RS06285 NONE
CH54_RS06280 NONE
CH54_RS20640 NONE
CH54_RS20635 1388103 .. 1388116 -  -9.5  -4.64144   AATAATCTCTAAAAA               GGCGC TACG GCGCC                TTTTTTTATGCCTGT  91 175
CH54_RS06270 1385136 .. 1385151 -    -4  -3.59979   GGGCGCTACTGGAAA              CATGAC AAGC ATCATG               ACAACCGCGGCAAAA  52 140
CH54_RS06245 1381782 .. 1381814 -  -7.1  -5.03405   AAGATCACATAAAAA     CGTTTCAGCAGCGGC CACTT GCCACTGCTG--ACG     GTAAAAAAATGCTGG  86 57
         glk 1380517 .. 1380534 - -11.3  -5.00616   CTCCGCCGTAAAAAA             GCAGAGC CTTG GCTCTGC              TGAGGTTAATAACAA  95 180
CH54_RS06215 1374334 .. 1374347 -  -3.1  -2.50545   GGCTGATAACAAATT               TCCAA CTCA TCGGA                GTTCAGCGCGATGGC  42 28
        alaC NONE
CH54_RS06205 1372252 .. 1372267 -  -8.2  -3.91144   CTGACATCGTATAAA              GGACGC ATTT GCGCCC               TTTATCACTTTAGGG  73 47
CH54_RS06190 NONE
CH54_RS06185 NONE
CH54_RS06180 1369181 .. 1369203 - -11.3  -4.39696   TGGGAAACCAACAAA           TGCCCCCGA TAACT TCAGGGGCA           TGGGGCTAAAAATAC  93 41
CH54_RS06150 1363222 .. 1363237 -    -6  -2.64595   AATCGCTATTACAAC              GGCCTC ACTT GGGGCC               TCTTTTGTTCCAGTC  54 3
        mltB 1357126 .. 1357144 - -11.7  -4.23054   ATAGATTAGTGAAAA             GGGCCAC TTAAT GTGGCCC             TAGTTTGAGATAAAT  95 187
CH54_RS06105 1351345 .. 1351358 -  -2.4  -2.86728   AGTAGGTATATCACA               CACT TTACTC AGTG                TAATGGCTAAAGAGT  41 79
CH54_RS06100 NONE
CH54_RS06095 NONE
CH54_RS06090 NONE
CH54_RS06085 1347420 .. 1347434 -  -2.9  -3.47916   AATATAAAATCAACA               CTTAT TTGAC ATAAG               ATATATTTTTGTAAC  48 276
CH54_RS06080 NONE
CH54_RS06075 1346163 .. 1346177 - -11.4  -5.52023   ATGAGCAATAAAAAA               GGAGCC AAA GGCTCC               TTCAAATAAAGCAAC 100 46
        ascF NONE
CH54_RS06060 1341367 .. 1341378 -  -2.2  -4.72386   GAAACCATTGAAAAA                GAGT TAGA ACCC                 AAGGCGGCAGAGACT  67 465
CH54_RS06045 1339714 .. 1339733 -    -5  -2.84272   TAAAAGTAAAAGGCA            GCTCTTCA ACTC TGAAGATC             GGAACCAAAGTGAAA  47 205
CH54_RS06035 1337916 .. 1337932 -  -3.7  -3.68302   GTAATAGCCTAATAA              GCAAG GCAATAT CTTGC              TCTAAATAATCATGC  54 155
CH54_RS06030 1336009 .. 1336034 -  -5.5  -4.23723   CAATATCAGCGAAAA         GAGTGCACA CTCATCTT TATGCACTC          TTTTAAATAGCCTTT  67 53
CH54_RS06020 1335172 .. 1335193 - -14.5  -3.75378   ATTTTTATAATAGAA           TAAGCCGCC ATCA GGCGGCTTA            TTTAATGTCGAATGC 100 61
CH54_RS06005 1332748 .. 1332771 - -15.4  -3.97636   ATCGCAACCCATAAA          CAGCCCCAAA TAAC TTTGGGGCTG           TTTGGGGGGATCCCC 100 147
        cspE 1331707 .. 1331730 -   -11  -5.72622   GCTAGAAATAAAAAA          CCCGCCTGAT AAGA ATGAGGCGGG           TTTTAAGAAATATTG 100 46
        tatA 1329418 .. 1329458 - -12.1  -4.57581   ACCTTAAATAATAAA  TAATCAAAAACGGATTTCC ATT GGAGATCCGTTTTTAATTT  TCAGCCTGTTTCCAT  95 130
CH54_RS05910 1314066 .. 1314098 -  -6.4  -2.56839   AATATACCCAAGGGA     TGACAGTG-GTTGAT TATT ACCAACTCACTGACA      ATAAACCTAATGCAG  52 165
        ubiF 1300856 .. 1300894 - -11.7  -2.53911   CCAAGCGGTAAGGCA   CCAGGTTTTGATCCTGG CATTC CCAGGTTCGAATCCTGG   TATCCCAGCCATACA  81 400
        nagE 1291649 .. 1291672 - -15.4  -6.17669   AATAAAACAAAAAAA          CGGGAAGAGA TCGC TCTCTTCCCG           CTGCTTTGATTAAAA 100 116
        glnS 1289710 .. 1289729 - -10.7  -5.25803   AATGGGCATAAAAAA            GGCGTGG ACTAAG CCACGCC             AATTGAGGTGAATCT 100 51
CH54_RS05780 NONE
        chiQ 1287245 .. 1287278 -  -6.1  -3.34895   CTCATCCGTAATGAA     TAATCACTGCCAAAA TCGC TACTGGCAGTCATTA      TTGTTAGTTAAATTT  60 78
CH54_RS05770 1284312 .. 1284328 - -10.8  -5.95539   TTTGAAACAAAAAAA              CCCCGG ACTCG CCGGGG              AAAAAACCATCAACT 100 244
CH54_RS05755 1280171 .. 1280190 -    -5  -3.28269   AACGTGTAAACCGAA            TCATCAGA AATT TCTGATGT             AAATCCCTTGTAGTA  54 477
        seqA NONE
         pgm 1276321 .. 1276338 - -11.3  -3.53012   TGGGTGTTGGCGAAA             TAGCGCC AACC GGCGCTA              TTTCTTACCTGTAAT  88 43
CH54_RS05690 1265222 .. 1265245 -  -8.8   -5.4833   TCACCCAATAAAAAA          GCCCATGAGC ATTC ACCCACGGGC           CTTTTACTTTACTGC  95 73
CH54_RS05685 NONE
        phrB NONE
CH54_RS05675 1262012 .. 1262034 - -11.4  -2.95884   GCAGCAAGCGAGAGA           CAAATCGGTC GGG AACCGATTTG           AACAGCATTTATGCT  81 160
CH54_RS05670 1261121 .. 1261165 - -22.4  -3.27022   TGGAGGGGATATCAA CGGTAACTTATGCACCGAGG CTTAT CGCCGGTGCATAAGTTACCG TATTAGGTCATGCGG 100 33
        pxpB NONE
CH54_RS05660 NONE
        pxpA 1258311 .. 1258324 -  -2.4  -3.01712   CTGTTTGTTCCAAGA               TGAC GCTCCT GTCA                TTATATTGAAAATGT  42 113
CH54_RS05650 NONE
CH54_RS05645 NONE
         pcp 1255806 .. 1255825 - -11.4  -4.66609   TATTTGATGTAAAAA            CGCCACCC TCTT AGGTGGCG             TTTTTTATACCCAAA  95 105
        sdhC NONE
        sdhD NONE
        sdhA 1251346 .. 1251363 -    -2  -3.28453   TATCAACACAACACA             TGCATT AGTAAG AACGCA              CTTTCGGCGGGAAGG  45 12
CH54_RS05615 1250461 .. 1250480 - -13.6  -3.34895   CCTACCTTTAAGCAA            CCTGGGGA AACA TCCCCAGG             TTAATAAACTCACAT  95 124
        sucA NONE
        odhB NONE
        sucC NONE
        sucD 1244016 .. 1244033 - -12.7  -4.75372   ATTAGGTATTAAAAA             GGCCACC CTAA GGTGGCC              TCTATATCACAAGAT 100 40
        cydA NONE
        cydB NONE
        cydX NONE
        ybgE 1238311 .. 1238332 -  -9.5  -4.36586   ATAGAACGAAAATAA           TTATGGGCC AGGC GACCCATAA            AGGAGAGTTTGTGTT  90 65
        ybgC NONE
        tolQ NONE
        tolR 1236644 .. 1236690 -  -2.2  -3.92577   GAACTGCCAAAAACA GGGTATCTACTGGCTGGATTTA CTA TCAACCCAGCCAATATCAACGC AAATTTATATCGGTT  51 30
        tolA 1235402 .. 1235436 -  -2.1  -2.54365   AACTACATAATACAT     GGTTGCTTAACAGAG TATAT CCCCGTCAATCAAAC     CTTATTGAGGTTTAA  39 27
        tolB NONE
         pal NONE
        cpoB 1232605 .. 1232639 - -15.9  -3.53012   TCTTCGCTCGCTAAA     GCCCAGAAATTAGTC AATAA GACCAATTCCTGGGC     TCGAAAAAAGCTAAA 100 36
CH54_RS05530 NONE
CH54_RS20620 NONE
CH54_RS05525 NONE
CH54_RS05520 NONE
CH54_RS20615 NONE
CH54_RS05515 NONE
CH54_RS20610 NONE
CH54_RS20605 NONE
CH54_RS20600 NONE
CH54_RS20595 NONE
CH54_RS20590 1230644 .. 1230663 -    -5   -3.2099   ACAAAATACTCAATA            TTTAGCGA AAAG TCGCTCAA             ATTTGTCTGATAATG  53 194
        nadA NONE
        pnuC 1228535 .. 1228579 -  -7.2  -2.50492   CACCATCATTAATAG CCATCAGTCAGGCG-CATGCT CTGT AGCACCTCGCCTGACTGACAT TTCCATCAACAGCTA  59 54
        aroG 1226098 .. 1226123 - -15.5  -5.52384   GTGCTATTAAAAAAA         CCCCCGCGCATC ATG GATGC-CGGGGG         TTTTTATTTGCCAGT 100 217
CH54_RS05445 1216043 .. 1216066 - -11.7  -4.84033   AGATAAAAACGAAAA          TGCCCGGCG TTCTTC CGCCAGGCA           TTTATAAGATGGATA 100 73
        modA NONE
        modB NONE
        modC 1213314 .. 1213332 -  -4.5  -5.32699   CTAAAGACTAAAAAA             GCGCC TTGATGATG GGCGC             TTTTTTATTTCTTTC  80 59
         pgl 1210817 .. 1210854 -  -4.1  -2.53263   GCTAGTTTGAATTTA   TTGGCTGAAAATCACTG GCAA CAGCAAGTTTCCGCCAT    AGAAATACAATTGAA  44 416
        bioB NONE
        bioF NONE
        bioC NONE
        bioD 1205957 .. 1205983 -  -3.7  -5.45802   GTGCCAAAAGAAAAA         GTGGGCTAATA ACCGG TATTAGCCCTT         TTCAATACCAACTAA  82 55
        uvrB 1202189 .. 1202222 -    -9  -2.66326   TTAACCCTAAATTTA    GCGGCACACCTTACGA GGAA TCG-A-GGTATGCCGC     AAGATATTAAGATAT  67 32
CH54_RS05380 1201786 .. 1201802 -  -5.1     -2.54   ATCATTGTACAACAG              CCCTTGG AAG CCAAAGA              TATCCCTTATCGTCA  48 116
        moaA NONE
        moaC NONE
        moaD 1198781 .. 1198797 -  -3.5  -3.21099   GTTGTCCATCATTAA              CCTCCCG TCA CCGGTGG              GAAGAAAGCCACTTC  46 5
        moaE 1198212 .. 1198229 -  -5.5  -3.08961   ATAAATAATGATACA             GGCCATC AACT GACAGCC              CACCGACTCTTTTAG  53 118
CH54_RS05350 1197386 .. 1197404 -   -11  -5.65496   CACGAAAAACAAAAA             GGACACCA ATA CGGTGTCC             TTTCAAATTTAGAGT 100 89
        rhlE 1189366 .. 1189383 -  -9.1  -5.90981   TCAGATGAAAAAAAA             CCGCCTC CGAA GAAGCGG              TTTTATCAGCGAATA 100 50
        dusC 1187826 .. 1187842 -  -2.2  -4.56597   GTTTTTGCTTAAAAA              CGAAAC TCGTG GTATCG              AAAACCATATCAAAG  63 455
CH54_RS05305 1185970 .. 1185984 - -11.4  -5.14563   TTCTTTATCAAAAAA               GGCGCT TAA AGCGCC               TTTTATTTGCGTTTA  95 43
        pbpG 1184377 .. 1184408 -  -9.6  -2.93236   TAATCCAATACTATA      GGCAGAG-TTGCA GGCTGGT TGCAAACTCTGCC      TTTCAGTGACTATTA  72 47
CH54_RS05285 1181492 .. 1181506 -  -3.5  -3.98842   TACAATAGTTAGAAA              CCGAGC AATT GC-CGG               TATGAACGGTTTTCT  56 4
CH54_RS05275 1179570 .. 1179582 -  -3.4  -4.90079   ACCCGAATAACAAAA                TCTG CAAAT CAGA                TCTGTCATGTCCAGT  70 46
CH54_RS05270 1179078 .. 1179105 -  -9.2  -2.79501   GATATTTTTATGAGA        GAAAGGTGACAA AATT TAGCCACCTTTC         TTATATTCTTGATGA  68 120
        phnC NONE
        phnD 1177148 .. 1177175 -    -7  -4.68593   GCTACCACCTAAAAA        TGATAGCCCAGA TAAA CCAGAGCTATCA         TATTTTATCCGCAGG  81 47
        phnE NONE
        phnE 1175279 .. 1175306 -  -7.3  -3.63018   AACCATGACATATAA        TTATTTATTAG TTATTT CTAATAAATAA         CTAATAAGGGTAAGA  68 78
CH54_RS05245 1174566 .. 1174586 -  -4.7  -5.65927   TATTTAAATAAAAAA            GGAATAGCA TAA TACCACTCC            TTTCTTACTTGCAAT  89 74
CH54_RS05235 NONE
CH54_RS05230 1170456 .. 1170477 -  -4.4  -2.82681   ATATTAAATATATTA           TTCAAGCC ACACTA GGCTAGAA            GGCTAATCTATCTTA  48 209
CH54_RS05225 1169254 .. 1169270 -  -2.2  -3.05644   TTTACAACCATAAAC              CCCATC TCCCT GACAGG              TAATCTTTTTATAAC  42 117
CH54_RS05220 1168096 .. 1168108 -  -3.3  -2.72324   CTGATGGAAATGAAT                CATCG ATG CGAAG                TATCCATAAAAATAA  43 12
CH54_RS05215 NONE
CH54_RS05210 NONE
CH54_RS05205 1165472 .. 1165484 -  -4.1  -2.61582   TATCTCATCGAGAAT                CAAGG CTT CCTTA                TTGCCTGTTTTAAAG  45 35
CH54_RS21960 1163214 .. 1163227 -  -2.5  -2.83867   TTACTTATTAATAAT               TTATT TATT AATAA                GAACAGATAATAACC  42 12
        dinG 1159263 .. 1159280 -  -4.3  -3.84266   AGATTTCAGATCAAA             TTATTTT TTAA AAAATAA              TTAATAAAGGCAATG  59 144
        aqpZ 1158248 .. 1158268 -  -3.3  -2.74248   GAATACTTCTGAAAC            TTTATCACC AAT AGTGATGAA            TGTGCCCGAAATTGT  43 145
        ybiB 1157074 .. 1157084 -  -5.4  -6.15717   CAAATACAAAAAAAA                 CATC ACG GATG                 TAATATTTAAATTAT 100 92
CH54_RS05165 1155001 .. 1155023 - -13.5  -5.19879   TCTGAAAGAGAAAAA           GCCCATCAG CCAAC CTGATGGGC           TTTTTTATGTCGACA 100 51
        rlmF 1152932 .. 1152948 -  -3.7  -3.61097   CCAGATAATTAAATA              TTGCC TATAGGC GGCAA              GTAAACGCATCCCGA  52 492
CH54_RS05150 1151262 .. 1151289 -  -9.9  -2.85585   CGTTAAAATAGATGA        TGGCGGGTATC TTCACT GATATCCGCCA         TTTTTTATGCTGACA  71 46
        ompX 1142307 .. 1142322 -  -6.8  -5.60864   TACAGACGAAAAAAA              TCCGCC CGAA AGCGGA               TTTTTCCAATACAGT 100 83
CH54_RS05090 1140830 .. 1140860 -  -9.9  -4.11748   TTGATAAATAAAAGA       GGCTATATTGCAC GACCA ATACAATATAGCC       CTCCGCCCTGACTCC  86 57
CH54_RS05085 1138924 .. 1138942 - -13.2  -5.61596   ATGGGCATAAAAAAA             GCTGATGC ATT GCATCAGC             TTTCTTATCAACACT 100 52
CH54_RS05070 1136012 .. 1136024 -  -3.3  -4.94992   TCAAATGGATAAAAA                TGTCG ATT CGACT                TTAGGGAGAGTGTTT  70 138
CH54_RS05065 1134444 .. 1134480 -  -4.6  -3.07935   ACGTTATTTAGCCAA   TACTTACTGAAGCCA TCTTATTG TGGCTTCAGTT-GTA    CGCAACATTAGCCCT  49 41
CH54_RS05020 1123586 .. 1123601 -    -4   -4.0641   TCTGAGCGAGATAAA              CATGAT GTAG ATCACG               TTCAGATTTTGCTCT  59 124
        folE 1122863 .. 1122874 -  -2.2  -4.07568   CCCTTTTTGGCAAAA                GGCT AATT AACC                 GTGGTGATATTAGCT  53 35
CH54_RS05010 1121523 .. 1121536 -  -3.8  -3.52093   ATAGGTTAAGCACAA               CCTG TCATGG CAGG                TGGCCTATCCTACCC  52 137
        galS 1120375 .. 1120394 -  -7.2  -3.61398   GGCCGTTGTTAAGAA            TCTGTGAA TTTT CTCACAGA             TTGAAAACGGTTACA  66 58
        mglB 1118969 .. 1119011 -  -7.7  -5.54192   ATCAATGCAAAAAAA CCTTCCA-CCCCGGTGCTGG TCAC CCAAGAACGGGGCCAGAAGG TTATTAATAACGTCT 100 95
        mglA 1117361 .. 1117372 -  -4.4  -2.98719   CGACTAGATTAGAGA                TGCA AGGA TGCA                 AGACGTAATATTTCA  49 7
        mglC 1116275 .. 1116300 - -14.1  -4.53685   AAATGACAATTAAAA         GCCAGCC-GAGT TTG ACTCTGGCTGGC         TTTTTTTACTGCTAA 100 48
        flhA NONE
        hypA NONE
        hypC 1096811 .. 1096823 -  -9.1  -2.62184   TTGGCCCGGAGAGTA                GCCTC GAA GAGGC                TATAGTCGGCCCCGG  67 244
CH54_RS21765 1093366 .. 1093376 -  -6.8  -3.17075   TGGGCTGCAACTCAA                 GCCA CAC TGGC                 CGCCCTTGGTTGCTC  57 96
CH54_RS04860 1086041 .. 1086065 - -10.8  -4.90906   CTAGAAGACGAAAAA         GCCAGTCATGG GAGT CC-TGACTGGC          TTTTTATTGCCAACA  93 61
        apbC 1082475 .. 1082530 - -11.3  -3.27951   GATGCCAGCACAATA CCCT-GCGTCTTTGGCGTTGCAGCGGT GTTG ACTGC-GCAACGCCAAAGACTTTAGAG AGACAAATAACCGCA  85 42
         udk NONE
         dcd 1081046 .. 1081056 -  -5.4  -4.15565   CTTATCAGGCGAAAA                 TCTC AGC GAGA                 AAAGGACTAATCTTT  67 32
        asmA 1079070 .. 1079114 - -11.5  -2.81312   AGAATAACAAAGTCA GACCACCACCTCCGATAACTA TCA TTGCTATCGAAGATGGCGCTC TTTTTTAAAGCTTAT  80 30
        dcuC 1077300 .. 1077322 - -10.5   -4.1472   ATGATAAAAATAGAA           CCGGGTTGC TTATT GCTACCCGG           TTTTTTTATCATTAT  89 69
        galU 1073575 .. 1073588 -  -5.3  -3.72893   TATTCTGGCACTAAA               TCGAT ATTA ATCGA                TTTGTTTTTTCAGCC  58 18
        galU 1072584 .. 1072600 -  -6.6  -6.22802   TTGTAGAAAAAAAAA              GCAATC ACCAA GATTGC              TTTTCATATATCGCT 100 49
        gndA 1070731 .. 1070755 -   -10  -5.42259   TTACTGGCAAAAAAA          CGCCCTCGAC TCAGC ATCGAGGGCA          TTTTTATTAAGGCAA 100 228
CH54_RS04765 1062176 .. 1062212 - -21.1   -3.6682   GCGTAGCGAGCGAAA    GTATTTTGGGCTTGGGC AGT GCTCAAGCCCAAAATAC    AAACGCGCAGTAGCC 100 47
CH54_RS04750 1058173 .. 1058198 -  -7.6  -5.54192   ACGAATGCAAAAAAA         TAACCGACGC GTTTAA ACGTCGGCTA          TTCCATGGCGCGTAT 100 135
CH54_RS04740 1056401 .. 1056418 - -12.7   -5.5074   TAATCCAATAAAAAA             CGGAGCC GTCA GGCTCCG              TTTTAATCAGCAATA 100 73
CH54_RS04730 1053559 .. 1053585 -  -9.5  -4.09321   GAGGGAACTAAATAA        TCCCCG-TCAGC GATG GCTAAACGGGGA         AATAAGCTTATTTAA  86 33
CH54_RS04725 1052292 .. 1052302 -  -2.4  -2.79183   GCTACCTGCACCATA                 CCGC TTT GCCG                 TACCTGGTGACAAGA  41 108
        tmaR 1051845 .. 1051865 - -12.6  -5.51612   ATAGAAAAAAGAAAA            GGCTGGCA ATTGA TGCCAGCC            TTTCTATTAATAGCT 100 70
        pduF 1026263 .. 1026299 -  -5.3   -3.8448   GAATAGATCACGAAA    TTTCCTCATCCCG TTTCACTCTTT CAAGATGAGGAAA    CTGGCATTCATTTAT  61 37
CH54_RS04575 1024660 .. 1024673 -  -8.1  -2.82516   TTCGTCAGCATCACA               GCAGC GGGG GCTGC                GGGGGATTGTCACCC  62 475
CH54_RS04570 NONE
        cbiB NONE
CH54_RS04560 1021446 .. 1021460 -  -3.5  -3.28712   CTTCTCCCTTCACAA               CTGCG CACCT CGCAA               CTGGTAGAGGATGGC  48 5
        cbiD NONE
CH54_RS04550 NONE
CH54_RS04545 NONE
CH54_RS04540 NONE
        cbiG NONE
CH54_RS04530 1016497 .. 1016511 -  -4.2  -3.44325   ATCCGTCATAATGAA               TAGCCC CGG GGGGTA               ATCATTAGCCCGTTA  52 1
CH54_RS04525 NONE
CH54_RS04520 NONE
CH54_RS04515 NONE
        cbiM NONE
CH54_RS04505 NONE
CH54_RS04500 NONE
CH54_RS04495 1011551 .. 1011561 -  -3.2  -2.71325   TTATCGATAAATTCA                 TCAC TGG GCGA                 CTCATCGCACTTCCT  43 27
CH54_RS04490 NONE
        cobU NONE
        cobS 1008706 .. 1008720 -  -2.8  -3.15758   AGAATGGCTCATTAA               GAGTTC CCA GAAATC               GGCAATGTCATAGCA  44 33
CH54_RS04475 NONE
        cobT NONE
CH54_RS04465 NONE
        xapA NONE
CH54_RS04450 1002462 .. 1002485 -  -9.6  -3.45571   TTTTTTAAATACCAA          CCGGATCAGT TTTA AGTGATCCGG           TTTTTTTTGCAATGG  77 77
CH54_RS04440  999409 ..  999428 -   -10  -2.64877   TGCAGACATAATCGA            TAGCGGCT AATA AGCCGCCA             TGACTGCCATCATAA  72 41
CH54_RS04435 NONE
CH54_RS04430  996522 ..  996553 -  -9.6  -5.10208   TAACTCCAATAAAAA      GGGAGAAAATATTA TTGC TAATACATTCTCCC       ACCTGGCTAATATCC  93 46
CH54_RS04425 NONE
CH54_RS04420  994821 ..  994840 -  -9.3  -4.40572   ATAACGGGTATAAAA            CACCCAC TATTCG GTGGGTG             TTTTAAATAGAATTA  86 38
CH54_RS04405  991224 ..  991243 -  -5.8  -3.01791   ACCTTTTTTCTAAGA            TAGAGAAA CTTG TCTCTCTA             TTATTATCGGCAATG  53 107
CH54_RS04400  989781 ..  989823 -  -8.7    -3.543   CTAGAAAATGCACAA GTTTGCTGA-AAAACAAGCC AATA AGCTCATTCTCTCAGCAAAC GCGCATTTTTAATGT  72 424
CH54_RS04350 NONE
CH54_RS04345  975316 ..  975343 -  -9.4   -2.9043   ACCATGACAAAAGAT        CGCTAAAAATGAA TGG TTCATTTT-AGCG        GGATGCTAACAGCCT  71 73
CH54_RS04330 NONE
CH54_RS04325 NONE
CH54_RS04320 NONE
CH54_RS04315 NONE
CH54_RS04310 NONE
CH54_RS04305 NONE
CH54_RS04300  953820 ..  953838 -  -4.4  -3.84451   CTCCTGAAAGTTAAA             CCGCCAGC CGG GCCGCCAG             CGCTTGTTTATTGAT  59 2
CH54_RS04295  952209 ..  952230 -  -7.9  -2.70932   CCTCTTTTGTAAGTA           CCCGGCTGGC GAA GTC-GCCGGG           AGCTTAGTTCCCGAA  61 269
CH54_RS04290  951191 ..  951202 -  -4.4  -3.07443   CGACACCCTAGTTAA                CTCA GCTA TGAG                 CAAAGCCAAATGAGT  49 56
CH54_RS04285  948869 ..  948893 - -14.3  -2.81888   GGGTAAACTGAATGA          TGCGCCCGAAC ACC ATCCGGGCGCA          GCGGGTAATCAGAAT  93 34
CH54_RS04280  947350 ..  947365 -  -4.6  -2.53243   GCCAGAGAACAAATT              TGGCCA TCAT TGGCCG               GCCGCCATTCGGGCG  47 16
CH54_RS04275 NONE
CH54_RS04270 NONE
CH54_RS04265 NONE
CH54_RS04260 NONE
CH54_RS04255  940567 ..  940586 -  -5.6  -3.67597   GCGGGGATGGAACAA            TGCCCCGC GGTG GCGACGCA             GGTCGGTGAATACCT  60 159
CH54_RS04250  939310 ..  939324 -  -2.8  -2.64803   CCATCCGCAAATCTA               TATGCA AAG TGCAAA               GTTTCCGATTATCAC  41 125
        citC NONE
        citD NONE
CH54_RS04190 NONE
        citF NONE
        citX NONE
        citG NONE
CH54_RS04170  920891 ..  920913 -   -12  -4.11585   ATCTATCATAAATAA           GTCGGGCC GCTGACT GGCCCGAC           ATACAGAAACACTTC  91 45
CH54_RS04150 NONE
CH54_RS04145  915787 ..  915804 -  -9.1  -4.43844   GTATTAGGGATAAAA             TCCCCGC GAAA GCAGGGA              TCGGAAAGGTTAAAA  86 35
        lpxO  914442 ..  914471 - -15.9  -4.83243   GCGACATAAAATAAA       TAGCCCACTGGAGG AAA CCTC-AGTGGGCTA       TTTGATGATTAGCTT 100 95
CH54_RS04135  913885 ..  913899 -    -7  -3.12668   CACGGGTACAGCTAA               CCCCGG AGA CCGGGC               GTACCCATCAACTCC  60 185
CH54_RS04110  908909 ..  908938 -  -8.7  -4.66537   GCTCTTAAGACAAAA       TTGAGAGCAGA AATAAAAA TCTGCCCTCAA        TTTATACCGTGACGA  88 50
CH54_RS04105  908122 ..  908138 -  -5.2  -3.41024   TGGGCTAATAGAACA              TATTGC TTTAC GCAATA              AAAAGTACAGCAGCT  54 83
CH54_RS04100  905703 ..  905717 -  -2.1  -3.70007   AGCATTTAAAATTAA               TGACA TACAG CGTCA               GTAACTTCATATAAT  49 7
CH54_RS04095  904847 ..  904864 -  -6.9   -5.0925   CCTTAAAATTAAAAA             GCAGCCA TTAT CGGCCGC              CTTTCGCATTGACGA  85 56
CH54_RS04090 NONE
CH54_RS04085  903091 ..  903103 -  -4.8  -3.07236   AAATCCAGCGTAATA                GTCG GTTCA CGAC                CAGCCCTTAATAATA  51 32
CH54_RS04080 NONE
CH54_RS04075 NONE
CH54_RS04070 NONE
CH54_RS04065  898949 ..  898977 - -16.1  -3.14132   CTGTTCCCTGATTAA        TAAAACGGCGCTG ATA CTGCGCCGTTTTA        TTATCTTTGCCAATA 100 49
CH54_RS04055 NONE
        cspE  886237 ..  886250 -  -9.5  -5.42514   CTAGAAAGTAAAAAA               CCCGC CTTA GCGGG                TTTTTTTATAATCAG 100 52
        dsrB  885748 ..  885776 - -11.8  -3.47345   AAGCTGATAGCATAA       CCGGAGGTAAGGC TCTC ACCTT-CCTCCGG        TTTTTTATTGTCACT  89 76
CH54_RS03995  882209 ..  882222 -  -3.1  -3.14026   TATATTTATATTTAA               TCAGC AGCA GCTAA                TTAAGTTAACTCCGG  46 123
        mgtA  879347 ..  879372 - -10.3  -2.82987   TGAATAGTCATTATA         GTTCCGGGGCC TATA GGCCCCGGATT          TCTTTATCTTAAGTA  73 54
        flhD NONE
        flhC  876615 ..  876650 - -10.4  -3.39556   AAGTTGCCAATAACA    GGCGACAGGGACGGTA TCCA TACCGCTGCTGTCACC     CAAAATTCTGACAAC  77 51
        motA NONE
        motB NONE
        cheA NONE
        cheW  871774 ..  871813 - -11.7   -4.0371   GAGTGTTGATATAAA  TGAATATGCAGAGTAGCC GTAAT GGCTACTCTG-ATAATCA  AATGAATAAGCAATA  91 46
CH54_RS03950  869767 ..  869781 -  -2.1  -3.56568   CAAGCAGCGTTCAAA               TCTAC TTCAT GCAGA               TTTTTCACCCCCGTC  47 132
CH54_RS03945 NONE
        cheR NONE
CH54_RS03935 NONE
        cheY NONE
        cheZ  864874 ..  864897 - -15.4  -4.62772   GCGAAAGTAAATAAA          GCAGATGAGG GAGC CCTCATCTGC           ATTTAGGGTCGTCAG 100 46
        flhB NONE
        flhA NONE
CH54_RS03905  858681 ..  858699 -  -6.7  -3.60296   GATGGTCACTCTAAA            GGCGCCAG TTTG CTGG-GCC             GCAAGATTGGCATTT  64 428
        flgB NONE
        flgC NONE
        flgD  855303 ..  855324 -  -3.8  -3.74077   CGTTACAGACCTAAA           GCG-TTGAT GACAT ATCAAACGC           TGTTTTTAATCATCA  54 89
        flgE NONE
CH54_RS03865 NONE
        flgG  852316 ..  852333 -  -2.7  -2.52516   TCTCTGATTATCAAT             CCTGTAA CCTG TTAGAGG              CTGGCAAGGTCAGCC  41 85
        flgH NONE
CH54_RS03850 NONE
        flgJ  849472 ..  849487 -  -2.5  -3.08314   TTCAATTTTCAAAAT              GGCCA GTAAAA TAGCC               TATTAAAAGAGAGAG  43 28
        flgK  847616 ..  847628 - -10.5  -2.93752   AAAATGAGATAAGCA                GCGGC AAT GCCGC                TAACCAAAACTTAAC  75 36
        flgL  846521 ..  846541 - -12.6   -2.5655   GCCAGTGAGAGGAAT            CCTGTGGG GCTAG CCCACAGG            TTGAAAGCAGATTAC  83 37
        fliE  834246 ..  834270 -  -3.8  -2.73797   ACCTATATAAATTCA         TTTAAAG-GAT AAAT ATCGCTTTAAA          TTGTTACATAAATGT  45 158
CH54_RS03725  824756 ..  824774 - -13.1   -4.9725   ATCGCGATATAAAAA             CCCCGCC GAAAA GGCGGGG             CTGAATAATGCAGTG 100 52
CH54_RS03720  823737 ..  823750 -  -2.3  -3.54626   TAATAAAGTTAAACA               CTGTG ATGT CACTG                AGTGAAAATGAATTA  47 38
        fliZ  823052 ..  823080 - -15.4  -4.85918   CATTAGATAATAAAA       CGCCCAGTCAAGG AAAA CCTTG-CTGGGCG        CGGAATCACTGAAAA 100 128
CH54_RS03710  821731 ..  821743 -  -3.4   -3.1247   ATTTTTGATATTCAA                CACT TTATC AGTG                TTTTTAATGGATTAA  46 94
        tcyJ NONE
        tcyL NONE
        yecC  819414 ..  819436 -  -6.9  -4.33708   AAACTATCACCAAAA           CGGGGGCTA GATGA TTGCCCCCA           CAATGACTTGGCATG  76 62
        putP  812348 ..  812368 - -10.4  -5.24531   ATTTTCTATAAAAAA            GCCCCCTG TTTTG CAGGAGGC            TATGTGGATTAAAGA 100 53
CH54_RS03665 NONE
CH54_RS03660 NONE
        efeB  808486 ..  808503 -  -6.9  -4.86033   AAAGGGTCAGAAAAA             GCACCGC AAAA GTGGTGC              TTTATTTCAATATGC  84 308
CH54_RS03635  805196 ..  805229 - -11.9  -4.51812   TGTCATAATAATAAA     CATCTATCTGGCATC TGGC GATGTCAGATAGATA      CGACTTAAATTAATT  95 30
CH54_RS03625  803137 ..  803173 -  -8.2  -3.29829   GATATTGCGCCATAA   CGCTCTTATATTATGCT AAAA AGCTCAATATA-GAGCG    TTATCATATTAATCT  66 34
CH54_RS03615  800562 ..  800584 -  -2.5  -4.63527   TGAGGATGCGAAAAA           TGGCAGAGC GATAG GCGCCGCCC           TAAATGACACAGCAT  62 451
CH54_RS03605  799437 ..  799457 -    -6  -3.36492   TGTTGAATGTCATAA            GCCCCGAC CTAAC GCTGGGGC            TTGCTCCTTATTTTG  60 33
CH54_RS03585  794918 ..  794930 -  -6.3  -4.71418   AATATTGAAAATAAA                CTTCA AGA TGAAG                AATTAAACGTCTTGA  80 110
        amyA NONE
CH54_RS03565  791026 ..  791046 -  -6.1  -4.54727   TGGCTCAAATTAAAA            GCGGCTATC GTC AATAGCAGC            AAGTGACAGCCTGTA  77 506
        uvrY NONE
        uvrC NONE
        pgsA  786906 ..  786919 -  -2.4  -3.02511   GCTATTCCCGCAACA               TCAG AACTTA CTGA                TTTTTTTGCTATCTT  42 152
CH54_RS03535 NONE
CH54_RS03530 NONE
CH54_RS03525  786544 ..  786557 -  -9.5  -6.20267   CCAAAAACAAAAAAA               CCGCC TCAC GGCGG                TTAACGACATACTCA 100 72
CH54_RS03510  784671 ..  784681 -  -5.4  -2.91912   TCAGCTAGCTAGAGA                 CTGA TAC TCAG                 TCTGTGGGGTGATAA  52 162
CH54_RS03500  780695 ..  780730 - -12.1  -3.36823   GGCGCTAAAACTTAA    TAACCAACGGTATCC AATAAG AAATACCGTTGGTTA     TATCATTCACACAAA  86 47
CH54_RS03480 NONE
CH54_RS03475  775001 ..  775031 -  -2.6  -2.60813   GACTTCGGTAAACAT       CATGGATAAATTAG CGG CAAATTTAGGCATG       GCTAATTCCTTAATT  41 27
CH54_RS03470  773983 ..  774011 -    -4  -3.81022   AAATTCTCACAATAA       GATATCCTAGCTT AAGA AAGCT-GTATATC        AGTTGTTTTGAATAA  57 265
        glsA NONE
CH54_RS03460  770967 ..  770999 -   -10   -5.4756   AAGGCTAATAAAAAA     CTGACAGCG-GCTGT ATTC ACAACACACTGTCAG      TTCACAGCAGACAGG 100 80
CH54_RS03445 NONE
CH54_RS03440  764948 ..  764974 - -10.8  -5.19251   CAATATGAAGAAAAA         CCGCGATAACTG TTT CGGCCATCGCGG         TTGTTGTTATCAATT 100 35
CH54_RS03435 NONE
CH54_RS03430 NONE
CH54_RS03425 NONE
CH54_RS03420 NONE
CH54_RS03415 NONE
CH54_RS03410  759470 ..  759482 -  -3.4  -3.79533   GAAATCATTAAAATA                GTGA GTATT TCAC                ATCACGGAATTTTAG  54 27
        tehB  758393 ..  758426 -  -5.9  -3.20901   ACGCGATGAACCCAA     GTTACCGCCCCGCTA AATA TCACGAGGCAGTTAC      TATTTCGTACTGCAT  54 59
CH54_RS03395  756690 ..  756700 -  -5.4  -3.07947   TAATAATTCTCAACA                 GCAT TAA ATGC                 TAAAATACCACTCCA  53 85
        fhuF NONE
CH54_RS03385  754292 ..  754309 -  -5.7  -4.29327   CATAAGCAAGAGAAA             TTATAAC CTAT GTTATAA              TAATAAATAGAATAG  67 247
        pgaA NONE
        pgaB NONE
        pgaC NONE
        pgaD  747504 ..  747544 -  -4.9  -4.89519   ATAACATAAAATAAA  TTCTGAATACCCGAT ATAAGTTAGCA ATCAGGTATTCAGAG  AAAAATAGCCCTTAG  77 37
CH54_RS03360  746419 ..  746432 -  -3.1  -4.13282   ATGACACTCGTAAAA               TTCGC GATA GCAAA                ATGTAAAAAAATATA  56 239
        phoH  745152 ..  745176 - -12.9  -4.02542   AAAGGGATAAGTAAA          GGGCAAGCG TTTGTGG CGCTTGCCC          TTTTTTATCGGGTCA 100 59
         cbl  741064 ..  741075 -    -3  -3.60098   AGGCCGCACTTCAAA                CATT GGTC AATG                 AATTCAGCGAGCGCG  49 429
CH54_RS03315  735246 ..  735271 -  -4.7  -3.41602   GTCATTTCAGCAGAA         GAAAATGTGGC TATG GCTCCATTTTC          TGGAGCCGCCTGTCT  52 101
CH54_RS03310 NONE
        astA NONE
        astD NONE
        astB NONE
        astE  727980 ..  727991 -  -5.8  -3.86903   TATATAACCAAAAGA                GTGC ATTG GCAC                 CAATTTGGTGCAAAG  63 474
CH54_RS03285  726560 ..  726577 - -10.5  -5.22039   TTTAAATGCAAAAAA             GGCGGGA ATAA CCCCGCC              TTTCTCATTCACCTA 100 83
CH54_RS03265  721893 ..  721911 -  -3.8  -3.17713   CAAAAACGGTAAAAC             TCATCAGA CCT CCTGTTGA             CAGGCTTTTAGTACC  48 10
CH54_RS03260  721218 ..  721252 -  -5.2  -3.66578   TGAAAGGAAATAATA    GAGTAATGACCACGA TGAAAG TTGTG-TCATTACTC     CGCCATTTTATTTAA  58 97
CH54_RS03255  719727 ..  719741 -  -2.8  -3.99602   AAAAAACAACAAATA               CACAGA TTA TCTTTG               CGTATAAGCCTAATT  55 105
CH54_RS03250 NONE
CH54_RS03245  717022 ..  717061 -  -2.2   -2.5409   ATAACTCCTAACTGA  TTGCTGGATGTGTAAT GTTATATT ATTACATGTCCGGCAA   TCAATAGGTATTATC  39 50
        zinT  716304 ..  716326 -  -6.9  -4.29621   GACAAATAAACTAAA           GCCGCGCAA CTCAC CTGCTCGGC           TTTTTTACATCCTTA  73 38
CH54_RS03235  715246 ..  715263 - -11.3  -5.05113   TGCAGATAAACAAAA             GGCTCCT GTTT AGGAGCC              TTGTTTTTTGGCATT  95 68
CH54_RS03215  711336 ..  711348 -  -6.9  -2.71712   CCGTTCCCCGGAAAG                CGACG GTG CGCCG                GGGAAGTTATCTTCC  56 44
        ychH  709925 ..  709950 - -13.3  -5.42975   GCAGATAAAGAAAAA         CCCGTTGATGC AGAT GCAACAACGGG          TTTTCTACTTTAGGT 100 190
        hemA  705484 ..  705504 -  -5.3    -3.889   TGTAATTAGAGGAAA            CTAGTGCTG ATC CAGCCCAAG            GCTGTCGCGTAATAA  61 5
        prfA NONE
        prmC NONE
CH54_RS03170 NONE
       sirB1  702157 ..  702168 -  -4.4  -3.61232   TGTTCCATACAAATA                CCTT TCTA AAGG                 ATAAATCGAGATTAA  54 147
        kdsA  701229 ..  701247 -  -7.4  -5.14563   TTCGCGATCAAAAAA             GGCAGC ATAGATA GCTGCC             TTTTTATTTATTCAC  86 73
CH54_RS22205  698823 ..  698844 - -10.1  -3.66378   CATATTTGAGCGAAA           GGCTCTGAC GAAA GTCAGGGCC            TTTTTCTTTGGTGCG  80 71
        ghrA NONE
CH54_RS03125  694787 ..  694803 -  -9.5  -3.11359   TTTTTAAAATTAAAG              TTGTGAC AAC GTCACAA              AAAATTATAGCTCGG  73 30
CH54_RS03120  694166 ..  694183 - -11.3  -2.52015   TTCAGATTGATTAAC             GGAGGAG ATTA CTCCTCC              ATATTACTGCTTTCT  79 16
        rimJ NONE
CH54_RS21820 NONE
CH54_RS21815  689398 ..  689414 -  -6.5  -2.69719   GCCATAAATATCAAT              TCCTGCT GTC AGCAGGC              GCGGCCTCTACCCAA  54 200
        murJ  687731 ..  687758 - -14.2  -4.38712   TTTATCGCGATAAAA        TACGAAAGGCCC CATC GGGCCTTTCGTC         GTAGTCGCCCCGTCA 100 70
CH54_RS03080 NONE
        cutC  684013 ..  684033 - -15.4  -5.66684   TAAGCCATAAAAAAA            CCCCGGCC TGATT GGCCGGGG            CTCTGACAGCTTCAT 100 79
        aspS  677684 ..  677697 -  -3.9  -2.74488   CAATCATCCGAATCA               CTTAT CGGT ATAAG                CTCATCGGGATTCTC  45 91
        nudB  677187 ..  677198 -  -2.2  -3.63922   AGTCTCTCCAAAATA                GCCT AATT AGAC                 TGAATAAAGAACGTA  49 20
CH54_RS03035  676354 ..  676378 - -14.3  -2.71144   TAGTGCTTCTAATGA          CACTGGCCACA AAA CGCGGCCAGTG          TTATAGCCGTCATAT  93 74
        ruvC  675740 ..  675759 -  -6.4  -5.34555   TTATAGCATAAAAAA            TGCTGGAT GGAT ATCCAGCT             TACAGTAACAGTTAA  87 63
        ruvA  675063 ..  675073 -  -4.6  -3.33492   CTATTCATTCTATAA                 CGCG GCA CGCA                 AAGCATCACGGATCA  52 9
        ruvB  673955 ..  673973 -  -3.9  -2.88788   CCACGGAGAAAACAG            TCGC-CTA AGAA TAGCGCGA             TCAGGGCTGGCACCA  46 64
        znuA NONE
        mepM  668264 ..  668298 - -11.5  -3.85817   ACCGCTGGGTATAAA    CACGCCGGTAG-CATA AATT CATGACTACCGGCGAG     CTATTAATCCAGTTG  90 29
        lpxM  667166 ..  667198 - -12.9  -4.05714   ATCTTTAATTAGAAA      CAAAAAGCCCACT CATTAAT AGCGGGCTTTTTG      TTGTCTCTATTCAAC 100 77
         zwf  662333 ..  662370 -  -6.3  -3.38046   GTGTCAGTTGAAAGA   TGGCTGGCAGAACAT TGACGATG AGGTTTCGCCAGCCA    TAAAGAATCACAATG  60 240
CH54_RS02970  661552 ..  661578 -   -16  -4.40561   CCTTTCTAAAAACAA         CAAAACCCCTGC ATT GCAGAGGTTTTG         TATTCAGCATAACTG 100 77
        mdtJ  660702 ..  660717 -  -3.2  -3.32291   GCAATATGATAAAAC              TCAAGC TGTT GCATGA               TGCTCACCCGAATTT  48 10
        mdtI  659967 ..  659978 -  -4.4  -4.07885   CAGCGTTCCGGAAAA                TCTG GATG CAGA                 CGCCACTGCGCAGAC  60 433
CH54_RS02950  657816 ..  657837 -  -7.2  -3.14234   GATGAATTCAACACA           GGGCGCGC ATGATA GCACACCC            CTCCTCGCTTTTCCC  63 41
        tsaB NONE
CH54_RS02940  656301 ..  656320 -   -15  -4.35926   AGCGCAAATGTAAAA            GGGCGCTG AATT CAGCGCCC             TTCTTGATTAACCCT 100 80
        fadD  654254 ..  654288 - -18.1  -3.60296   TAGTGCTACGGCAAA    CA-CAACAACGCCGGT GATA ACCGGCGTTGTTGATG     ATGATTGAGTAACTC 100 51
         rnd  652895 ..  652922 - -14.3  -3.61517   ATGTCTTCGCAATAA        CTACCCCTGTA TTTATT TACAGGGGTAG         TTTCTTTTATTTGAC 100 198
CH54_RS02910  649954 ..  649966 -  -7.7  -3.33265   AGTCGATAAATTCAA                GGGTA ATA TACCC                TAAATAATTCGAGTT  66 132
CH54_RS02905 NONE
CH54_RS02900  648534 ..  648544 -  -3.2  -2.99649   ATATCCTGATAGACA                 CTAC ACC GCAG                 GCATTATTGACTAAT  45 29
CH54_RS02895  647803 ..  647837 -  -7.1  -3.14468   GGCTACCAGATGCAA    GTTTTGCCGCCCGAGC AATG GCCCAAGCGGC-AGAC     ATTCACTTAGATTAT  63 32
CH54_RS02890 NONE
CH54_RS02885  646813 ..  646836 - -14.6  -4.04174   CGTGACATAACTAAA          CAAGGCCGCC CTAT GGCAGCCTTG           TTTCAGATTATTATC 100 47
        lpxA  645435 ..  645454 - -12.1  -3.07816   TCTTTATCTATTTAA            GGCGCCC AAAATG GGGCGCC             TTTTTATATTCTGAC  82 74
        fadR  642046 ..  642060 - -11.4  -5.11937   AAGAATTGTAAAAAA               GGGGCT AAT AGCCCC               TTTTACTTTTCTGCT  95 56
CH54_RS02855 NONE
        dadX  637415 ..  637429 -  -8.6  -3.86015   GATTCGGGTGACAAA               TCTGCT GGG AGCAGA               TTTGAACGCTGCTTG  77 109
CH54_RS02830  631093 ..  631105 -  -3.4  -3.39449   CTGCACGAACACGAA                CATC TTCAT GATG                TACATCATCAGCATT  48 233
CH54_RS02810  625501 ..  625517 -  -9.4  -5.07275   TTACAGATACAAAAA              TGGGGC TTTAT GCCCCA              TTTTTTATGGTTCAG  93 58
        msrB NONE
CH54_RS02790  622185 ..  622204 - -10.7  -3.50335   GGGTATAAACATCAA            CGGAGCC GAATGT GGCTCCG             TTTGAACCTGCAACT  82 75
CH54_RS02770  617751 ..  617784 -  -5.2  -4.10453   CAAAGCGGGCGAAAA     CGCAGCTTATTGCC GATAAA AGCGACAGGCTGCG      CAGTTTCGCATAGTA  63 45
        selD NONE
CH54_RS02760 NONE
CH54_RS02755  613669 ..  613696 -    -7  -2.64324   AAGCATGGAAAAACC        CTCAGACCACGC TCCA GTATGGTCTGAA         TTCGCACTCTAATAA  56 513
CH54_RS02740  610963 ..  610973 -  -6.8  -3.46687   AACCTTAAACAGCAA                 GCTG ATT CAGC                 ATCAAGAGTTCAGAT  64 306
        rssA NONE
        rssB  605877 ..  605891 -  -5.6  -2.62184   TCTGTTTTCATAGCA               CGGCTG GCT CATCCG               CGGACAGCATCAACC  51 3
CH54_RS02700  603853 ..  603876 -  -4.6  -4.04206   CTATTGTGATAGAAA          TACCCTCC-TA TTA TACGGGGGGTA          TTTTTTTGCGTTCTC  61 363
CH54_RS02685  602012 ..  602043 -  -3.7   -2.9838   CGTAAAAAGTAACTA      CCCCACTGCCT TTAATAAAGG AGCCAGTGAGG       TGTTCTCTGGGCCGT  47 40
CH54_RS02675  600376 ..  600395 -  -9.2  -3.77303   CACTGAAAGATATAA            CCCCCGAC ATCT GTTGGGGG             TTTCTTTTTATATTC  76 322
CH54_RS02665  596246 ..  596268 -  -9.8   -5.4756   AATGGCAAGAAAAAA           GCCACCGGTC ATA AACCCGTGGC           CTCTTAATGATGAGT 100 56
CH54_RS02660  593763 ..  593775 -  -5.5  -2.93252   ATCGCCCAATAATCA                GGCGA GCT TCACC                TTTAAAAGGTATGTA  53 193
        oppA  592041 ..  592074 - -13.9  -3.43151   TGAATTATCAAGCAA     TAAGGGCAGCCCACA AATT TGGCGGCTGCCCTTA      AGATATTACTGCTTG  95 31
        oppB NONE
        oppC NONE
CH54_RS02640 NONE
        oppF  587982 ..  588006 -  -6.4  -5.61596   ATGCCCATAAAAAAA         TCCCCG-CTGA TTTA TCTGGCGGGGA          TTTTTATTGGACATC  95 168
CH54_RS20495  585482 ..  585500 -  -6.7  -5.75538   GGGAAAAAACAAAAA             CAGCCTC ATAAA GAGACTG             TTTTTATTACCATCA 100 48
CH54_RS02620  584135 ..  584149 -  -8.6  -3.55219   AACCGCATGATATAA               CTGTGA TAT TCACAG               CAAAAGTTTACCTAA  72 94
CH54_RS02615  583765 ..  583784 - -12.2  -2.73364   CTTTGATTGGAATCA            TACGCCTG GCTC CAGGCGTA             TTAGCTTGATTGCAC  81 55
        tonB  581832 ..  581851 -   -15  -4.81249   CGGTAAATGCAAAAA            GGGCCGCT ATAA AGCGGCCC             TTTTTATTGCAGCGT 100 69
CH54_RS02585  578786 ..  578800 -  -9.2  -4.70046   GATAAAATCAGAAAA               GGGCCA TTA CGGCCC               TTTTTGTTATTCAGG  89 32
        ompW  576651 ..  576664 -  -5.9  -2.63723   TGCTTATCAAGTAAT               CCCCC TCTC GGAGG                CGCATTCCTGCGCCT  51 356
CH54_RS02535 NONE
CH54_RS02530  567025 ..  567039 -  -5.7   -4.3898   ATTATTTTTATAAAA               GCATC AATTA GATGC               ATAAATAAAAATAAA  70 323
CH54_RS02525  559029 ..  559058 - -16.7  -2.79796   TGGGATTGCAGTATA       TAAATAACGGTGC CGAA GCACCGTTATTTA        TCAGGACGAACAATC 100 43
CH54_RS02520  557894 ..  557904 -  -3.2  -3.21705   TAGAATGCAATCCAA                 CGCT TGT AGCA                 GGACACACTGTACAT  46 462
CH54_RS02515  557221 ..  557248 -  -5.6  -4.40132   ACTAACGATAAGAAA        TGAGCAATTTAG CGAA CTAAACTGCCCT         AATCCCAGTGATTGT  70 183
CH54_RS02510  553708 ..  553738 -   -10  -3.78934   TTTGCGTGATAATAA       GAGAGTATTAAA GGTGATT TTTAATACTCTC       TATATCATCGTTACT  80 143
CH54_RS02505 NONE
CH54_RS02500  551903 ..  551919 -  -6.5  -3.61806   AGAGCAATCAGAGAA              TCGTAGG TAT CCTCCGA              TACATTCGCACCCAA  64 201
CH54_RS02490  550974 ..  550999 -  -9.7  -3.03124   TTTCATCGTTCAATA         CAGGCCACGAC TACA ATAGTGGCCTG          TATACTGTTATTCAG  72 129
CH54_RS02465  546165 ..  546189 -  -5.6  -3.71873   GCATTGACAGCTAAA          GCGCTGTCCA TGGCC TGGGAAGCGC          GAGGAAAGCCGGCTA  59 491
CH54_RS02450  544161 ..  544184 -  -6.1  -5.04597   AGCCATAGATAAAAA          TAGAGAGCT ATTACA AACTCTCTA           AAATCCATTTAGCTT  83 34
CH54_RS21425  543842 ..  543864 - -10.6  -5.42975   TCAGATAAATAAAAA           GCCCAGCCTT TTT AAGACTGAGC           TTTTATTATTTAGAT 100 31
CH54_RS02445  541962 ..  541979 -  -9.8  -3.93985   ACAACATAGATTAAA             GGCGGG GATTAA CCCGCC              ACTTTATTATTTAGC  83 32
        rluB  539084 ..  539107 -   -14  -2.91064   CTTACAATGAATAAT          TGGGAAGGAA ATGA TTCCTTCCCA           TAGATAACTTATCCG  91 34
CH54_RS02430  538474 ..  538508 - -15.2  -3.55524   AATCATTCAAATCAA     TCAAATGCCGCAGACA GAA TATCTGCGGCATTTTA     GCTTTATAGTGATAT 100 83
        sohB  535808 ..  535830 - -13.5  -5.02074   CGATTGCGCAAAAAA           CAACAGGGG CTTTC CCCCTGTTG           TTTTCATATCAGATT 100 55
        topA  532335 ..  532351 -  -9.4  -5.80364   AGCCCAATAAAAAAA              CCAGCC ATTTA GGCTGG              TTTTTACATATACGA 100 123
        cysB  530925 ..  530940 - -10.4  -3.67976   CTCAGCAACCTCAAA              GCCCCT TTTC AGGGGC               TTTCTTTTAATGGAT  80 48
CH54_RS02390 NONE
        acnA  526548 ..  526567 -   -10  -3.47583   TAACACAAGCTATAA            GGGTGGTC TCGC AACCACCC             TTTTTAATGATTTAA  79 76
        pgpB  524486 ..  524498 -  -3.3  -3.53091   ACGTTTTTTCCTAAA                GGCCG AAT CAACC                TGATGAATTATGCCA  50 189
CH54_RS02370  524145 ..  524159 -  -5.8  -2.91656   ACAGCAGAAACAGCA               TTTCTA ACA TAGAAA               ATTATTCCTTGCTGA  52 27
        lapB  522469 ..  522494 - -12.7  -3.14132   TCTGTGTCGTAGCAA         CCAAAGAACAC TAAA GTGCTCTTTGG          TTGCTTTTTCAATGT  85 516
        pyrF NONE
        yciH  520596 ..  520609 -  -5.3  -2.73681   CACTTACCCGAATCA               CTTAC CCGT GTAAG                CTCATCGGGATACGT  49 133
        araD  519092 ..  519113 -  -5.1  -4.56597   TTGTGGTTGGAAAAA           CCCGTGC AAGACTAA ACACGGG            CAGCCGTCAAACGCG  71 45
         fsa  517249 ..  517273 -  -3.6  -2.93853   GTCCGTGAATGAAAC          TCTAGCTCAA GATTG TCGAGCCAAA          TGCGCCCTGCCAATC  45 2
CH54_RS02295 NONE
CH54_RS02290  506652 ..  506679 -  -3.6  -4.07285   CAGTGAAATAAAATA        TCATTTAAG-TGA GCA TCGGCTTAAATGA        GTCATTACCATTCTA  56 58
CH54_RS02285  506346 ..  506379 -  -9.7  -3.36749   TATCCTGAACATTAA     TCACCAGGCCCAGC AAAATAG GCTGGA-CTGGTGA     TTTAAATAGGCTGCC  75 43
CH54_RS02260  501903 ..  501937 - -11.5  -2.78395   AATCCGGATTAACGA     CTGAACTGACGCCCT GCAAT AGGGTGTCAGTTCAC     TGACATCAGGTAAGT  80 17
CH54_RS02230 NONE
CH54_RS02225 NONE
CH54_RS02220 NONE
CH54_RS02215  488377 ..  488401 -  -6.5  -2.63715   ATGTAGTCGACACCA          TTGAGCAAC CCCATCC GTTGCCCAA          ACTGCCGGTAGCCCG  53 388
CH54_RS02195 NONE
CH54_RS02190 NONE
        araC  480738 ..  480748 -  -5.4  -3.91984   ATATGCCCTAAATAA                 TGCA AGT TGCA                 GGAAGGCGGCAATTG  63 217
CH54_RS02180  479631 ..  479642 -  -4.4  -4.30995   TTTTTTATAAAATAA                TCCT ATTT AGGA                 AGCATAACTCAGTTT  63 34
CH54_RS02175  478454 ..  478480 - -15.2  -5.19251   GAATACTAACAAAAA         CGCCCGTGTTTC AAT GAAATACGGGCG         TTTCTTATTGATAAC 100 44
CH54_RS21745 NONE
        malI  472809 ..  472821 -  -6.2  -3.57507   ATCAACCCAAATCAA                GCCG AACCG CGGC                GAATCAATACCGGCG  62 9
        fumC  464781 ..  464796 -  -2.6  -3.69216   TGCTGAGTTAAAATA              TCACTT TAAC AAATGA               AAACCACCCTAACTA  50 334
CH54_RS02120  463595 ..  463608 -  -2.3  -4.92385   CACAGCTAAACAAAA               GCTTG AATG CAGGC                CGTGCTGTTCCACCA  70 445
CH54_RS02100 NONE
         mlc  458266 ..  458298 - -10.9  -2.88427   AATATGGCCCATATA      CTCACTAATAATTAA CTC TTAATTATTAGTGAC      GCCCTATCCTTGGAG  77 29
        bioD  457157 ..  457170 -  -8.1  -3.07344   TGACCGGTGAATACA               CCCTG CTTC CAGGG                CTACTATTATCCTGT  60 266
CH54_RS02070  453659 ..  453671 -  -3.4  -3.72893   TATGGTGCGACCAAA                GCTT TTGTT AAGC                AGTTTAGTCTGGGGC  53 365
CH54_RS02035 NONE
CH54_RS02000  442092 ..  442108 -  -9.3  -4.09685   GCTTATTCTTGAAAA              GCCCGTG TAG CGCGGGC              TTTTACTCTTCAATA  83 35
        yghU  433469 ..  433506 -    -7   -3.9122   GATCTGGCTAAATAA   CCGCCCTAAAACCC GGTGAGAATA GGGCGTTAGGGCGA    TGTTCTTGATTAAGA  69 49
        norV NONE
        norW  429114 ..  429135 -  -7.1  -4.58685   AAATTGCCGGAAAAA           CCCCCTACG CAGG CGGTGGGGG            GTTAGCATCCTAAAG  81 42
CH54_RS01945  427290 ..  427307 -  -5.5  -2.62616   TTACCGGCGACATTA             CGCCG TGGTATTC CGGCG              TTGAATAACGAAATG  48 287
CH54_RS22200  423679 ..  423696 -  -9.1  -3.70902   CCGTTGATATGGAAA             GTGCCAC GATC GCGGCAC              AAGGTTATCGGTTCA  74 399
CH54_RS01915 NONE
CH54_RS01910 NONE
CH54_RS01905  414780 ..  414806 -  -4.4  -4.27483   ATCCAGAAAACCAAA        TTGCCGCC-GT AAAACA ACTGGCGGCGA         ATATTTTACAACGCT  62 505
        ivbL  413022 ..  413046 -   -15  -4.85782   GGGGCTAAAAAGAAA         CCCCGCTCGGC TGGC GCCG-GCGGGG          TTTGGGAATCTTTCT 100 55
        ilvB NONE
        ilvN  410825 ..  410857 - -13.5  -4.00756   TATTCCATGAAATAA      GGGCTGTTAACGATA TCG TCTCGATAACAGCCC      CTTGTATTTTCGTCA 100 148
CH54_RS01860  403528 ..  403564 -  -5.8  -3.14616   AAGACTAATAAATTA   GCGT-TGCAGCCGAGCT GGCT AGCTCGGCTGCTTATGG    TGTCAGCAGCATCGC  54 61
         ogt  400679 ..  400711 -  -2.8  -3.09492   GCGTCAATTTTAACA     TCTTTTCTTGCGTCT GATA AGA-GCAAGAATAGT      TAGCGTACTAAAAGA  43 25
CH54_RS01835 NONE
        uspE  398636 ..  398653 - -12.7  -3.14564   GTAGTCTTTGATTAA             GGGCCAC CTCG GTGGCCC              TTTTCTTTGGATTTA  85 67
        ydgH  393870 ..  393888 - -12.4  -5.76633   TGACAGATAAAAAAA             GGGCAGCC AAT GGCTACCC             TTATGATTACGATTG 100 49
CH54_RS01805  392211 ..  392238 - -11.4  -3.78902   CAACCAATACTCAAA        TGGACA-GCCAGT GTT ACTGGCGTGCCCA        TTGTCGAGTGTTTCC  88 44
        rstA NONE
        rstB NONE
CH54_RS01785  387717 ..  387743 - -10.9  -3.54653   ATGGTCAGTAGAGAA         TACGGCCTCTC AGGGG GAGAGTCCGTA         TAAAAGGGCAATCTG  82 56
         asr  386448 ..  386465 - -12.7  -5.24531   ACTCCCGATAAAAAA             CACCCGG AAAA CCGGGTG              TTGGGTGAATTCAGT 100 85
CH54_RS01770  385276 ..  385309 -  -5.5  -4.38927   CGTGCAGATAAGAAA     TAATAGGC-AATAAAG TCC CTTTGTTAGCCCATTA     ATCTATCTCGCAGAA  70 50
        azoR  379328 ..  379345 - -14.1  -5.28778   ATCATTTATAAAAAA             GCGCGCC TGAA GGCGCGC              AATGATGAAATTGAC 100 125
CH54_RS01730  374634 ..  374655 -  -9.5  -3.15544   GCTTATCGGGATGAA           TGAGCCTCA TCCT TGAGACTCA            CCCTGCGGACTTTCT  73 48
CH54_RS01720  373203 ..  373247 - -11.6  -2.67747   CCGTCATACTACAAG CTGCATGCACGGGGATAA CGGTGATTT TTATCGCCGCGCATACAG TCAAACTATTTAATA  79 31
        nifJ  368867 ..  368891 - -14.4  -5.34309   ATCACCAAATAAAAA          GCCAGTCAGT AGATA ACTGACTGGC          TTGTGGGGCTGGCGC 100 55
CH54_RS01705  367744 ..  367765 - -13.1  -3.15544   GCTCATCGGGATTAA           TGAGCCTCA TCCC TGAGGCTCA            CCCTGCGGGCTAGCA  91 166
        ttcA  366313 ..  366328 -  -3.2  -3.84284   TTAAAACGCAGTAAA              TGGCTC TAAT GAGTCA               CTGACGGTTGAGTAA  54 337
CH54_RS01690  364445 ..  364475 - -14.2   -3.2362   TAATGTTGATAAAAG       CATAATCCGCCA TCATAAG TGGCGGATTATG       TTTATATAATGATTA  95 407
        mpaA  361431 ..  361450 -  -6.4  -3.15579   GCAATGTTGGAGCAA            CCTCTGCCC GCA GGGCAG-GA            TGACTCGTTACAGAA  57 365
         tpx  360084 ..  360108 -   -10    -5.252   GATTGCTATAAAAAA         CGGCTGCACCC AGAT GGGC-CAGCCG          TTTGTATTAAATTTA 100 84
CH54_RS01655 NONE
CH54_RS01650  356673 ..  356691 -  -8.8  -3.53012   TGGCGCGGGCTGAAA             TCAGCCGC TAT GCCGCTGA             GTCGGCATTAATGAT  69 453
        pspF  351414 ..  351424 -  -5.4  -3.32844   CCGGGTAGTTTACAA                 TCAC AAT GTGA                 TGCTGATAACGGCAC  54 343
        sapA NONE
        sapB NONE
        sapC NONE
        sapD NONE
        sapF  344495 ..  344514 - -13.6  -5.67967   AGGAGTATAAAAAAA            CCGCGATC AAGA GATCGCGG             AGTCAGATTCAATAT 100 82
CH54_RS01570  342778 ..  342791 -  -5.2  -3.36749   TATTCCTAAGATGAA               CCGC CATGCT GCGG                TGGTGGTAGCTGAGC  54 135
        dtpA  339853 ..  339868 - -10.4  -6.23545   GTTAAACAAAAAAAA              CGCTCC CGAA GGAGCG               CTTTTAACCAACCAG 100 45
CH54_RS01550 NONE
CH54_RS01545  338116 ..  338153 -  -5.5   -4.3255   GCGGGAAGTAAGAAA   TTGACCTACAGCAGTGA ATTT CCGCCACTGTAGGCCAT    CCATGACAGTTATTT  70 60
        gstA  337355 ..  337375 - -12.6  -3.53761   TAATCTGTTGCTAAA            GTGCCCCT GATTA AGGGGCAC            TTTAATCCCGCTAAT  90 52
CH54_RS01510  331754 ..  331784 - -12.7  -4.59773   TTTTAGCCGTAAAAA       TAAGCCAGAGATC GTTAT GATCTCTGGCTTT       TATCGATGACATCAC 100 95
CH54_RS01500 NONE
CH54_RS01495 NONE
CH54_RS01490  327675 ..  327686 -    -3  -3.57263   ACCCTGAGTTCCAAA                CATT GCGT AATG                 AATTACAGACAGTAG  49 262
        eptA  324709 ..  324731 -  -2.7  -5.80364   AGGTCAAGAAAAAAA           TGCCAGC AGAGGAGAA ACTGGCA           CTAAGTTTGGCTATT  85 66
CH54_RS01470  324000 ..  324018 -    -6  -3.16071   TCCTATATTAATAGA             CCAGTC GACTAGT GACTGG             ATAAATCCTGAAAAT  58 69
CH54_RS01465  322836 ..  322856 - -14.7  -4.08557   TGGTGCAAATAAGAA            CGGCCAGGC ATA GCCTGACCG            TTATGAAACCAATAG 100 50
        gloA  322270 ..  322286 -  -9.4  -5.31275   CGCGATGAGAAAAAA              GGCACC TTGTT GGTGCC              CTCTGGTTAATCAGT 100 36
         rnt  321481 ..  321498 -  -8.4  -5.49579   GTATAAAAAACAAAA             GGTGGC TTGCTG GCCACC              TTTTTTAATGGGTCA  95 63
CH54_RS01445  319580 ..  319591 -    -3  -2.80879   ATTAATCTTAACAAC                TTTC AACA GAAA                 TGACAGAGATAACCA  42 180
        sodB  318551 ..  318565 -  -2.8  -3.93638   AATCAATGTTATAAA               GTGC GTAATGA GCAC               AAGATTTTTTTTCTT  53 330
        purR  317253 ..  317264 -  -5.8  -2.55544   TGAGGACTGAACGCA                CAGC GTTA GCTG                 CCGGTAACATGAGGG  50 58
        punC  314865 ..  314910 -  -7.5  -2.80816   GTTCGATTGAGTATA GGCTGGCCGGA-GCGCTTTCTC AAT AATAAATCGCGTCCGGCCTGCA TGTTCTTTAGTGACT  60 55
         cfa  313430 ..  313447 - -12.7  -2.97392   GATACTAAAAGAGTA             GGGGGCT GATG AGCCCCC              ACCTTGACAGCGTTT  84 48
CH54_RS01410  310441 ..  310454 -  -6.7  -2.73681   TACTCACCCGAATCA               CTGAC TTGA GTCAG                CTCTGCGGGACTCGT  56 319
CH54_RS01405 NONE
CH54_RS01400 NONE
CH54_RS01395  309711 ..  309727 -  -5.2   -3.2044   AATAGAATGGAAAAC              TTTAGC ACGAG GCTAAA              CGCATGATCGGTATA  53 366
        pykF  308089 ..  308108 - -10.7  -5.26119   TGTTTAAAAAGAAAA            CGCCGCT ATGAAA AGCGGCG             TTTTTAATTAGTATT 100 57
CH54_RS01385  307546 ..  307564 - -14.6  -6.10295   GCAAGATAAAAAAAA             TGGCGCAC AAT GTGCGCCA             TTTTTCATTCAGGAA 100 47
        ydiK  294291 ..  294319 - -15.3  -3.02043   AATTGCTGGGCAATA        GGGGTTAGGCAGC ATA ACTGCCAAACCCC        ATGATATCCGTCATA 100 108
        rprA  293645 ..  293661 -  -3.6  -4.10429   AATGAGGCGGTAAAA              GCCCTG TTATC CATGGC              GATTCAGGCGGCTAA  58 301
CH54_RS01325 NONE
CH54_RS01320  289121 ..  289133 -  -4.1   -4.1891   GCCGGTGAAGAGAAA                GCGAT TCC ATCAC                TGTTATAACGGGAAT  61 63
        hemP  288711 ..  288731 -    -4   -3.4574   CTTATCACCAAAAAG            TGACTCAG AATTA CTTAGTCA            ATATGAGTTTCCCGG  52 15
CH54_RS01310  286471 ..  286497 -  -7.2  -2.59431   TTCCTTGATAATCTA         GTGCCGCAGCTT GTG AGGCTGCGACAG         GGTTCCATAGAGCCA  59 92
CH54_RS01305 NONE
CH54_RS01300  284507 ..  284532 - -12.6    -3.254   CAGCTAGTCAGAATA         GGTGGCAGGA GGACTT TCCCGCCACC          CGAGTTTTTCCCCTC  85 39
CH54_RS22000  256464 ..  256497 -  -4.5   -2.8655   CTGAGCCAGATGAGA     GTCAAGCTCAGCAGC CAGT GCTGCTTCGGTTAAC      TGTTTTATTAAAGAT  48 215
CH54_RS01170 NONE
CH54_RS01160  254159 ..  254180 -  -8.8  -4.08767   TCGATCTGGCCAAAA           TGCACTCA TCAGAG TGAGTGCA            TCTCAACCGTTATCC  79 76
CH54_RS01140  252092 ..  252102 -  -6.8  -3.06796   TGTTAGGTTATGCAA                 CCAC AGT GTGG                 TAATTGGCAATAATA  59 7
        yfeA NONE
        yfeB NONE
        yfeC NONE
        yfeD  247452 ..  247477 -  -5.4  -3.99374   GGTCATTAATAATAA         GCCGTAGTGC GCAAAT ACAATACGGC          AAGTATATTAAAGCT  65 48
CH54_RS01110  246228 ..  246244 -  -6.5  -4.51777   AGATCATAATGAAAA              GGTCCAT AAT ATGGGCC              TTTTTTCTATCCCCC  77 89
        hxpB  244302 ..  244322 -  -4.1  -3.99062   AATAGTGAGGAGAAA            TAATGAAGA TGT TCTTTATTA            ATGATGAAACGCCTT  60 409
        kduI  243185 ..  243197 -  -6.9  -4.63932   TATTGGGGAAGAAAA                CGCCC AAA GGACG                GATTCAGTTGGTGAC  79 63
        kduD  242265 ..  242284 - -12.2  -5.87996   TAACCAATAAAAAAA            GGCACAAC AGAA GTTGTGCC             CGAATGGAATTTTGA 100 104
CH54_RS01080 NONE
CH54_RS01075 NONE
CH54_RS01070 NONE
CH54_RS01065 NONE
CH54_RS01060  236019 ..  236046 -  -9.9  -5.07652   TTTTCTAAAACAAAA        TAACCCTGCCA AATTAA TGGCAGGGTTT         AATAGGTACTTAAGT  93 53
CH54_RS01055  234889 ..  234920 - -13.2  -5.00616   GGGGGGCTTAAAAAA      GGGGAAAAGC-AACT GGG AGTCAGCTTTTCCCC      AAAGTCATACGGTAG 100 175
CH54_RS01050  233962 ..  233972 -  -2.4  -3.24924   TTTTTATCTAGAATA                 GAGC CAC GCAC                 AGGCAACTGCGCAAA  43 167
CH54_RS01045  232458 ..  232479 - -10.9  -5.61881   TTTTAAAAACAAAAA           GCCAGTCAC AGAT ATGACTGGC            TTTTGAGGACTCATC 100 49
CH54_RS01025 NONE
CH54_RS01020  225970 ..  225982 -  -4.7  -5.10208   TAAGTTCAATAAAAA                CCCCG CTT CGGCG                CTGAGGGATCCCCAC  76 51
        yebS NONE
CH54_RS00990  216989 ..  217019 -    -4  -3.53224   TATTGGGTCTTGAAA       GAAACGCCGTCA CTTATGT TGATGGCATCTC       GACCGCACTGGCCTT  52 274
CH54_RS00980  214639 ..  214658 -  -6.4  -4.42748   TCACTGGAAAAACAA            TGACGGTC ATCT AACCGCCA             TGTTTAAGTAAAATT  74 121
CH54_RS00975  213901 ..  213915 -  -4.2  -2.56596   CTGGCTACCAACTGA               CAGTCA CGT TGACGG               TGTCGGTATAGGTGC  44 0
CH54_RS00970 NONE
CH54_RS00965  212764 ..  212774 -  -5.4  -3.68836   ATAGCCATTTAATAA                 GTGA CGG TCAC                 TAATAGCGTATCGGT  60 8
CH54_RS00960  211920 ..  211932 -  -2.7  -3.39895   CCCTGCATTAATCAA                TAAAG ACT CTTCA                TCTGGATAGTCTATT  46 36
CH54_RS00955 NONE
CH54_RS00950  208353 ..  208363 -  -2.6  -3.32521   ACGACATCCCCATAA                 TTAA CAA TTAA                 TACACAAGTACCAGA  46 22
CH54_RS00945  206394 ..  206410 -  -9.4  -5.81412   CCGAGCTAAAAAAAA              GCGCCA GAAGG TGGCGC              GAAAAAAATGCCGCT 100 46
CH54_RS00940  206028 ..  206060 -  -7.7  -4.45765   TGTAAAATGAAGAAA      CCGCCACTCATAAAT TTT AGCTATGGGTGACGG      ATCTTTAAACCGTCA  80 38
CH54_RS21995  204819 ..  204835 -  -7.3  -2.94872   TTGATCCAAGAATTA              TGGAATC ACT GATCCCA              GACCAAGGGTTTCCA  61 458
CH54_RS00910 NONE
CH54_RS00905  199332 ..  199344 -  -4.8  -2.97177   TGTAAAAGCAATAAC                CCGT TATTT ACGG                TGTTCTTTACACATA  51 321
CH54_RS00895 NONE
        gltS  196767 ..  196792 -  -9.9  -3.17075   TTTTTGTGAACCTAA         TGGCGTTGT-AT TTT ATAACAACGCCA         AATTTTGAGTTATTT  73 62
CH54_RS00880  194341 ..  194375 - -13.9  -4.31329   GGAAAAAGGTGAAAA    TTGTCTCTTGA-ACAG AACA CTGTATCAAGAGACAA     TTTTTATATTTAGCT 100 55
CH54_RS00875  193592 ..  193604 -  -3.4  -3.55205   AAATCAAGATTATAA                GTCA TCCAG TGAC                ACCCTGACCGGTTGT  50 7
CH54_RS00870  193305 ..  193328 -  -8.2  -4.18018   GGGTTGGATTGAAAA          CTGACAATCA GACG CGATTGCCAG           CTTCACTGTAGGCTT  77 9
CH54_RS00840  188880 ..  188903 -  -9.6  -3.57263   ATTCTCATCGCCAAA          CTCCCGCA GACCCTGG TGCGGGAG           TCTCTTACTCATGAC  77 34
        exoX  186224 ..  186238 -  -4.2  -4.26903   TCGATGTTACCAAAA               CATTGG TTG CCAAGG               GTTATGGCGATGCTA  62 515
        purT  180355 ..  180371 - -10.8  -4.20918   TTCAATGCCAATAAA              CCCGCC GTGAT GGCGGG              TTTATTCATCAGTGC  90 96
        pabB NONE
CH54_RS00785  177471 ..  177488 -  -5.5  -2.73624   GTATTAAGTAAAGAG             CCTGTAG ATAG CTGCAGG              TTACTTCGTATTAAG  51 381
CH54_RS00780  175990 ..  176007 - -12.7  -3.30124   TTTCACTGTGCATAA             GGGGAGC CGTA GCTCCCC              TTAATGAAAACGTCT  87 56
        manX  171684 ..  171706 -    -4  -3.81488   GCTGTGCAAAGATAA           CCGAGTCCTG AAA CAGAACAGGG           CATAACCTTTCTATA  57 181
CH54_RS00765 NONE
CH54_RS00760  169926 ..  169943 - -10.5  -5.63517   TCCCGAAATAAAAAA             CCGGGAG TAAA CCCCCGG              TTTTCGTTAAATCTA 100 50
CH54_RS00755  169396 ..  169407 -  -4.4  -3.51232   GTGTCGGGAAATTAA                TCAG TTAA CTGA                 ATAATCAAAAGATTC  54 59
        mntP  168360 ..  168381 -  -5.2  -6.28631   TAAACCAAAAAAAAA           CCGCAATTC TTTTT GAAT-GCGG           TTTTTTTTTGCGTTT 100 87
CH54_RS00740  163321 ..  163345 - -11.5  -2.67515   TGTATCATTAGAGGA          GCAGGTGAC GGCGGAG GTCACCTGC          GAAAGAACGCGGGTT  79 39
CH54_RS00735  162811 ..  162823 -  -9.1  -2.60212   TGACGAGCGCATAAC                TCCCC TGA GGGGA                ATGTTATTTTAATAG  67 122
        pgeF  159111 ..  159126 -  -7.5  -4.56597   TTTTGCTGTTAAAAA              CCCGC CTTTGT GCGGG               TTTTTTTGTTTCAGA  81 64
        pagP  156891 ..  156921 -  -9.7   -4.2573   GAAATAACGCTAAAA       TCGCTGGGCAGAA ACAAA TTATGCCCGGCGA       TTGCTTTCTTTCGTA  89 224
CH54_RS00680  152980 ..  152991 -    -3  -4.71426   TCCTTAGCAATAAAA                TCAT TGGC ATGA                 CACGGTCGGCTAAAG  65 412
CH54_RS00665  151565 ..  151578 -  -2.3  -4.57073   GATCGCGTTGAAAAA               GCCTG CTAT CAGGT                TAGCGTTAGTATGAT  61 512
CH54_RS00640 NONE
CH54_RS00635  146246 ..  146275 - -15.1  -5.25893   ATACATATGAAAAAA       TGTGGGGCAGGAA GATA TTACTGCCCCACA        AATACACATTGACGA 100 92
        hdeB  143992 ..  144014 - -11.2   -3.1894   CAAAAGTAACAGACA           GCCCCTCCTC GTT AAGGCGGGGC           TTTGAATGATATGAC  82 43
CH54_RS00620  143316 ..  143330 -  -2.1  -4.12188   CTATCATTCCCAAAA               TACTG GCGCT CAGCA               GTGCCGCGACTTTGC  53 259
CH54_RS00610  142335 ..  142358 -   -11  -3.67597   GTTGGTATTCAACAA          CAGCCATAGC ATCG GCTCTGGCTG           CTATTATTTGATATC  83 47
CH54_RS00600  140511 ..  140523 -  -3.4  -3.01924   TACGGCTGGTTAATA                TTGG TGATG CCAA                ATCATTGGCGTGCCA  45 266
CH54_RS00590 NONE
         gap  136457 ..  136474 -  -5.7   -4.8622   TGGCTGAATCAAAAA             TCATTTA AAAT TAAATGA              CTCTTTTTTAAGCTT  79 249
CH54_RS00580  134059 ..  134076 -  -6.2  -2.96731   ATAATTGAATAACCA             CCCGCC CACTAT AGCGGG              GTTTCTGTTTATTGC  56 150
CH54_RS00575  133744 ..  133761 - -11.3   -5.1356   TTCTATCAATAAAAA             GCCCTCA TGAG TGAGGGC              TAGAGGCTAACAGTT  95 32
CH54_RS00570  132160 ..  132177 -  -8.4  -2.72036   TAAATCTAGAGAGCA             GGTGCC CACAGT GGCACC              TGTTTTTTATCCATT  65 491
        rluE NONE
CH54_RS00545  126969 ..  126988 -  -4.8  -3.81539   ACGTAAATACCTAAA            GCCCCTGC GATG GCGGTGGC             GGATGATATTATCCG  61 185
        mnmA NONE
        hflD NONE
        purB  123717 ..  123736 -  -7.1  -2.87683   ATAGGGGGTTATACA            GGTGGCG TTGATT CACCACC             TGTATTTGAGATTAA  60 45
CH54_RS00525  122924 ..  122946 - -10.7  -3.40191   TCGATAAGACATTAA           TCGGGTAAT TTAAT ATTACCCGA           CAAATAAAAATTAAA  80 49
        phoP NONE
        phoQ NONE
CH54_RS00510  119326 ..  119343 -  -5.6  -3.44051   CGGTTATCATGAGAA             TTGCTG AATTGA CAGCAA              AACGGGCTAAAGAGT  56 243
         mfd  109206 ..  109245 - -15.2  -3.15663   AGCGAGTGGCATTAA  CATTAGCGCGGGTTTC TCACATCT GAAACCCGCGCTAACA   TTTTGATATTAAGCC 100 34
CH54_RS00425   99375 ..   99389 -  -3.6  -3.98913   GTTATAGGTAAATAA               CATCAT AAA ATGATA               GAGTTAATTAAATAC  56 157
CH54_RS20390   98948 ..   98966 -   -16  -4.40804   GATGAGTTTACAAAA             GGGCCACC TGC GGTGGCCC             CACTGGGGGATTAAA 100 36
CH54_RS00420 NONE
CH54_RS00415 NONE
CH54_RS00410 NONE
CH54_RS00405   93273 ..   93290 - -14.1  -4.13767   CTGGGGAGTGCAAAA             GGGCGGC GAAA GCCGCCC              TTTTTTTGTATTCAG 100 85
CH54_RS00330   79806 ..   79828 - -13.6  -3.69663   AGTATTACGCAAGAA           TAGCGCTATT TAA AATAGCGCTA           TTAGTTTTACAGTCA  95 62
         rne   74777 ..   74792 - -11.8  -5.63517   CGGCGAAATAAAAAA              CCCGCC AGAT GGCGGG               TTTTGCAATATTAGG 100 58
        pyrC   72936 ..   72963 -  -7.2  -3.01712   TTGGCCCTCCGAATA        TTTATACTGTTT ATTT ATACAGTATAAA         TATTCAGGCCGCAAC  61 97
        dinI   72596 ..   72616 - -14.7  -5.38047   CATTGATATAAAAAA            GCCGAGGAG CGA CTCCCCGGC            AAAAAACTGCATTTA 100 82
        bssS   72062 ..   72087 - -12.7  -5.06816   AGCGGTTAATAAAAA         GGCACCGAGTGA TAT TCACT-GGTGCC         TTTTTACGAGCTTTG 100 63
        solA   70653 ..   70691 -  -5.5  -3.44529   TTAGATATGAATTAA  TTGCCAATGACTTGTTTA AGTC TCAATA-GTCATTGGCAA   TAATTTAGTGAGTCA  58 57
CH54_RS00285   69714 ..   69729 -  -3.4  -4.00683   AAAAATTGAAGGAAA              TATAAA TTAG TTTATA               TAAAAAGGCATTTAA  56 185
CH54_RS20380   69401 ..   69419 -    -3   -3.1875   CATATTGTAACTTAA             CATCTGAG GGC CGCAGGTG             ATTTGATGCCTGTTG  44 66
CH54_RS00265   65210 ..   65231 - -13.1  -3.14132   GTTCTTGGGGACTAA           TGAGCCTCA TCCC TGAGGCTCA            CCCTATGGGCAGCAT  91 278
CH54_RS00260   64619 ..   64643 -  -7.8  -5.63517   CCGCGAAATAAAAAA          GCCACTACGC GATGG GCGCAGCAGC          TCATTTATCAGCACA 100 49
        mdtG   62964 ..   62977 -  -3.1  -3.27774   CATCGCAATTATCAA               TCAGT TTAA ACCGA                ATCTTATGGTTTTTT  48 144
CH54_RS00250   61066 ..   61082 - -10.8  -5.47159   TTTGAACATAAAAAA              CCCGCC ATTAA GGCGGG              TTGGTGTAGCTTAAC 100 50
CH54_RS00240   59667 ..   59685 -  -7.4  -5.85244   AAGTAAAATAAAAAA             CGGGCA TATAAAT TGCCCG             TTTTTTGTGTATATA 100 341
        mdoC   53850 ..   53860 -  -3.2  -4.50159   TGCAAGTGAAACAAA                 CCCT GAT AAGG                 AATCAACAGGATAAT  64 165
CH54_RS00215   53502 ..   53558 -  -8.2  -3.01329   GCATATAGGAAAGTA TCTCCAGATCGCTCACCTTTAATCGCCC AGC GGGGAATCAAGGGTGAGCG-T-TGGATA ATGAAATTAATCGCG  63 32
CH54_RS00210   51587 ..   51601 -  -4.2  -2.84807   CTTAAATAAATTAAG               CGAACT CTA AGCCCG               AGTTGAATATTAGAT  46 62
CH54_RS00205   48360 ..   48394 - -17.5   -3.3858   AAAGTAATCCTATAA     TGTATTCGCTGTAAT AGATG ATTACAGCGAATACA     AAGTACGACTCTTGC 100 62
        tusE   24759 ..   24773 -  -4.2  -3.11634   CGCTATAGCACGCAA               CGGCAA GCA TTGGCG               TTAGGGGTGACCGGT  48 245
        rlmI   22943 ..   22967 -  -5.6  -2.89797   TCCGGATAAACATTA          CGCTGCCATC TATAT GAGGGCAGTG          CAGGGCATTTCAAGT  52 40
        hspQ   22563 ..   22581 - -11.7  -5.24531   ATTGGGTATAAAAAA             CCCGGCA ACCAA TGCCGGG             TTTTATCAATCAGTG 100 47
CH54_RS00090   20777 ..   20798 - -13.1  -3.14132   GCTCCTGGGGACTAA           TGAGCCTCA TCCC TGAGGCTCA            CCCTATGGGCAGCAT  91 238
CH54_RS00085   20032 ..   20046 -  -6.4  -3.93583   CAATTGAGCGACAAA               TCGGTC GGG AACCGA               TTTGAACAGCATTTA  66 197
CH54_RS00075   17222 ..   17236 -  -4.2  -4.98672   TCTAAAAACAGAAAA               TTCAGC GTT GCTGAT               ACTGGCGTTGAGCAT  71 12
        yccS   15031 ..   15053 -  -4.8  -4.15881   AAACAGCATAAAGAA           GGGCCATT GATAGAA ACTGGCCC           TGGGTTCAATTAGCC  65 35
        sulA   13331 ..   13341 -  -5.4  -2.80438   CCAAATAGGCAATGA                 GCTT TAA AAGC                 TAAGCCCTTGGTTAA  52 339
        ompA   12185 ..   12199 - -12.8   -5.9873   GCATGATAAAAAAAA               CCCCGC AAT GCGGGG               TTTTTTACGAAAGGA 100 47
CH54_RS00045    9642 ..    9657 -    -9    -3.224   GAAGTGCGCACAATA              GCGTAC ACCT GTACGC               TGAACAAGTCCGATC  70 39
        fabA    9048 ..    9077 - -16.5  -3.84406   TTGGCATCATAATAA       TGGTGCAGGGGGT TAAC AGCCCCTGCACCA        GAAGTATTAGAAAGC 100 32
CH54_RS00035 NONE
        fabF    6899 ..    6926 -  -8.4   -3.4439   CAGACTAAGGGATAA        CCTCCGCTTTAT GCGT ATATTGCGGAGG         TTGTTGTTTTTACTC  72 215
