UGYR_RS00030	SM00981	UGYR_RS00030
UGYR_RS00035	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS00100	SM00851	MGS-like domain
UGYR_RS00110	SM00881	CoA binding domain
UGYR_RS00115	SM00992	Hemimethylated DNA-binding protein YccV like
UGYR_RS00120	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
UGYR_RS00140	SM00947	Carbonic anhydrase
UGYR_RS00145	SM01091	Transporter associated domain
UGYR_RS00190	SM00450	Rhodanese Homology Domain
UGYR_RS00200	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS00235	SM00316	Ribosomal protein S1-like RNA-binding domain
UGYR_RS00240	SM00363	S4 RNA-binding domain
UGYR_RS00270	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
UGYR_RS00275	SM00822	UGYR_RS00275
UGYR_RS00285	SM00825	Beta-ketoacyl synthase
UGYR_RS00360	SM00487	DEAD-like helicases superfamily
UGYR_RS00360	SM00490	helicase superfamily c-terminal domain
UGYR_RS00360	SM00982	UGYR_RS00360
UGYR_RS00360	SM01058	CarD-like/TRCF domain
UGYR_RS00370	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS00395	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
UGYR_RS00400	SM00387	Histidine kinase-like ATPases
UGYR_RS00400	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS00405	SM00448	cheY-homologous receiver domain
UGYR_RS00405	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS00440	SM01329	UGYR_RS00440
UGYR_RS00445	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS00465	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
UGYR_RS00475	SM00448	cheY-homologous receiver domain
UGYR_RS00480	SM00387	Histidine kinase-like ATPases
UGYR_RS00490	SM00235	Zinc-dependent metalloprotease
UGYR_RS00500	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS00525	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS00545	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS00545	SM00387	Histidine kinase-like ATPases
UGYR_RS00560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
UGYR_RS00605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
UGYR_RS00605	SM00866	UGYR_RS00605
UGYR_RS00640	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
UGYR_RS00720	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
UGYR_RS00720	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS00755	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS00780	SM01400	UGYR_RS00780
UGYR_RS00800	SM00937	UGYR_RS00800
UGYR_RS00840	SM00267	diguanylate cyclase
UGYR_RS00870	SM00481	DNA polymerase alpha chain like domain
UGYR_RS00920	SM00912	haemagglutination activity domain
UGYR_RS00930	SM00836	DALR anticodon binding domain
UGYR_RS00930	SM01016	Arginyl tRNA synthetase N terminal dom
UGYR_RS00965	SM00834	Putative regulatory protein
UGYR_RS00990	SM00278	Helix-hairpin-helix DNA-binding motif class 1
UGYR_RS00995	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS01010	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS01020	SM00257	Lysin motif
UGYR_RS01065	SM00491	UGYR_RS01065
UGYR_RS01085	SM00341	Helicase and RNase D C-terminal
UGYR_RS01085	SM00474	3'-5' exonuclease
UGYR_RS01135	SM00345	helix_turn_helix gluconate operon transcriptional repressor
UGYR_RS01150	SM01005	Alanine racemase, C-terminal domain
UGYR_RS01165	SM00052	Putative diguanylate phosphodiesterase
UGYR_RS01165	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
UGYR_RS01165	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
UGYR_RS01165	SM00091	PAS domain
UGYR_RS01165	SM00267	diguanylate cyclase
UGYR_RS01190	SM00763	PrkA AAA domain
UGYR_RS01210	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
UGYR_RS01230	SM00870	UGYR_RS01230
UGYR_RS01250	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
UGYR_RS01250	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
UGYR_RS01250	SM00493	UGYR_RS01250
UGYR_RS01310	SM00448	cheY-homologous receiver domain
UGYR_RS01315	SM00984	UDP binding domain
UGYR_RS01320	SM00528	Domain in histone-like proteins of HNS family
UGYR_RS01365	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS01370	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS01380	SM00155	Phospholipase D. Active site motifs.
UGYR_RS01485	SM00749	bacterial OsmY and nodulation domain
UGYR_RS01520	SM00481	DNA polymerase alpha chain like domain
UGYR_RS01530	SM00363	S4 RNA-binding domain
UGYR_RS01540	SM00822	UGYR_RS01540
UGYR_RS01555	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
UGYR_RS01555	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
UGYR_RS01555	SM00493	UGYR_RS01555
UGYR_RS01585	SM00014	Acid phosphatase homologues
UGYR_RS01595	SM00028	Tetratricopeptide repeats
UGYR_RS01610	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
UGYR_RS01630	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
UGYR_RS01630	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
UGYR_RS01630	SM00091	PAS domain
UGYR_RS01630	SM00267	diguanylate cyclase
UGYR_RS01635	SM00357	Cold shock protein domain
UGYR_RS01635	SM00955	UGYR_RS01635
UGYR_RS01640	SM00478	endonuclease III
UGYR_RS01640	SM00525	UGYR_RS01640
UGYR_RS01650	SM00900	UGYR_RS01650
UGYR_RS01660	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS01765	SM00644	UGYR_RS01765
UGYR_RS01835	SM00871	Bacterial transcription activator, effector binding domain
UGYR_RS01845	SM00100	Cyclic nucleotide-monophosphate binding domain
UGYR_RS01845	SM00419	helix_turn_helix, cAMP Regulatory protein
UGYR_RS01860	SM00420	helix_turn_helix, Deoxyribose operon repressor
UGYR_RS01860	SM01134	UGYR_RS01860
UGYR_RS01875	SM01007	Class II Aldolase and Adducin N-terminal domain
UGYR_RS01880	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
UGYR_RS01895	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
UGYR_RS01895	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
UGYR_RS01915	SM00448	cheY-homologous receiver domain
UGYR_RS01915	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS01920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS01920	SM00387	Histidine kinase-like ATPases
UGYR_RS01920	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS01935	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS01950	SM00020	Trypsin-like serine protease
UGYR_RS01955	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS01955	SM00487	DEAD-like helicases superfamily
UGYR_RS01955	SM00490	helicase superfamily c-terminal domain
UGYR_RS01955	SM00847	Helicase associated domain (HA2)  Add an annotation
UGYR_RS01980	SM00871	Bacterial transcription activator, effector binding domain
UGYR_RS02015	SM00890	Domain of unknown function
UGYR_RS02040	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
UGYR_RS02050	SM00091	PAS domain
UGYR_RS02050	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS02095	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS02130	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS02135	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS02155	SM00271	DnaJ molecular chaperone homology domain
UGYR_RS02190	SM00363	S4 RNA-binding domain
UGYR_RS02210	SM00347	helix_turn_helix multiple antibiotic resistance protein
UGYR_RS02245	SM00479	UGYR_RS02245
UGYR_RS02265	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS02345	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS02410	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS02465	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS02520	SM00411	bacterial (prokaryotic) histone like domain
UGYR_RS02525	SM00873	B3/4 domain
UGYR_RS02525	SM00874	tRNA synthetase B5 domain
UGYR_RS02525	SM00896	Ferredoxin-fold anticodon binding domain
UGYR_RS02550	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
UGYR_RS02600	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS02640	SM00644	UGYR_RS02640
UGYR_RS02645	SM00346	helix_turn_helix isocitrate lyase regulation
UGYR_RS02660	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
UGYR_RS02660	SM00245	tail specific protease
UGYR_RS02665	SM00945	ProQ/FINO family
UGYR_RS02670	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
UGYR_RS02685	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
UGYR_RS02685	SM00091	PAS domain
UGYR_RS02685	SM00267	diguanylate cyclase
UGYR_RS02695	SM01022	UGYR_RS02695
UGYR_RS02975	SM00479	UGYR_RS02975
UGYR_RS02990	SM01022	UGYR_RS02990
UGYR_RS03000	SM00487	DEAD-like helicases superfamily
UGYR_RS03000	SM00490	helicase superfamily c-terminal domain
UGYR_RS03030	SM01091	Transporter associated domain
UGYR_RS03100	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
UGYR_RS03100	SM00450	Rhodanese Homology Domain
UGYR_RS03130	SM00357	Cold shock protein domain
UGYR_RS03180	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS03195	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS03200	SM00090	RIO-like kinase
UGYR_RS03205	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
UGYR_RS03205	SM00091	PAS domain
UGYR_RS03205	SM00267	diguanylate cyclase
UGYR_RS03245	SM00357	Cold shock protein domain
UGYR_RS03250	SM00357	Cold shock protein domain
UGYR_RS03265	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS03295	SM00363	S4 RNA-binding domain
UGYR_RS03415	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS03425	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
UGYR_RS03425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS03455	SM00465	GIY-YIG type nucleases (URI domain)
UGYR_RS03460	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS03460	SM00448	cheY-homologous receiver domain
UGYR_RS03495	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS03510	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS03520	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS03520	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
UGYR_RS03570	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS03575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
UGYR_RS03585	SM00477	DNA/RNA non-specific endonuclease
UGYR_RS03585	SM00892	DNA/RNA non-specific endonuclease
UGYR_RS03615	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS03675	SM00047	Lysozyme subfamily 2
UGYR_RS03720	SM00858	UGYR_RS03720
UGYR_RS03760	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS03830	SM00448	cheY-homologous receiver domain
UGYR_RS03835	SM00448	cheY-homologous receiver domain
UGYR_RS03840	SM00138	Methyltransferase, chemotaxis proteins 
UGYR_RS03845	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
UGYR_RS03845	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS03845	SM00319	Homologues of the ligand binding domain of Tar
UGYR_RS03850	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
UGYR_RS03850	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS03850	SM00319	Homologues of the ligand binding domain of Tar
UGYR_RS03855	SM00260	Two component signalling adaptor domain
UGYR_RS03860	SM00073	Histidine Phosphotransfer domain
UGYR_RS03860	SM00260	Two component signalling adaptor domain
UGYR_RS03860	SM00387	Histidine kinase-like ATPases
UGYR_RS03860	SM01231	UGYR_RS03860
UGYR_RS03900	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
UGYR_RS03900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS03910	SM00357	Cold shock protein domain
UGYR_RS03920	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS03925	SM01038	Beta galactosidase small chain
UGYR_RS03930	SM00829	Enoylreductase
UGYR_RS04005	SM00764	Citrate lyase ligase C-terminal domain
UGYR_RS04010	SM00091	PAS domain
UGYR_RS04010	SM00387	Histidine kinase-like ATPases
UGYR_RS04015	SM00448	cheY-homologous receiver domain
UGYR_RS04020	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS04020	SM00448	cheY-homologous receiver domain
UGYR_RS04025	SM00387	Histidine kinase-like ATPases
UGYR_RS04045	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS04050	SM00100	Cyclic nucleotide-monophosphate binding domain
UGYR_RS04050	SM00419	helix_turn_helix, cAMP Regulatory protein
UGYR_RS04075	SM00479	UGYR_RS04075
UGYR_RS04090	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS04130	SM00518	AP endonuclease family 2
UGYR_RS04175	SM00841	Elongation factor P, C-terminal
UGYR_RS04175	SM01185	UGYR_RS04175
UGYR_RS04195	SM00833	Cobalamin synthesis protein cobW C-terminal domain
UGYR_RS04200	SM00014	Acid phosphatase homologues
UGYR_RS04210	SM00052	Putative diguanylate phosphodiesterase
UGYR_RS04230	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS04245	SM00363	S4 RNA-binding domain
UGYR_RS04295	SM00857	Resolvase, N terminal domain
UGYR_RS04425	SM00507	HNH nucleases
UGYR_RS04465	SM00507	HNH nucleases
UGYR_RS04470	SM01252	UGYR_RS04470
UGYR_RS04520	SM00530	Helix-turn-helix XRE-family like proteins 
UGYR_RS04615	SM00387	Histidine kinase-like ATPases
UGYR_RS04615	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS04620	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS04620	SM00448	cheY-homologous receiver domain
UGYR_RS04625	SM00387	Histidine kinase-like ATPases
UGYR_RS04625	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS04625	SM00448	cheY-homologous receiver domain
UGYR_RS04630	SM00434	DNA Topoisomerase IV
UGYR_RS04665	SM00852	Probable molybdopterin binding domain
UGYR_RS04695	SM01060	UGYR_RS04695
UGYR_RS04705	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
UGYR_RS04775	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
UGYR_RS04775	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
UGYR_RS04780	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
UGYR_RS04820	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
UGYR_RS04855	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS04885	SM00052	Putative diguanylate phosphodiesterase
UGYR_RS04900	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS04915	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS04960	SM00859	Semialdehyde dehydrogenase, NAD binding domain
UGYR_RS04970	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS04985	SM00345	helix_turn_helix gluconate operon transcriptional repressor
UGYR_RS05030	SM00825	Beta-ketoacyl synthase
UGYR_RS05070	SM00463	Small MutS-related domain
UGYR_RS05145	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS05190	SM00387	Histidine kinase-like ATPases
UGYR_RS05195	SM00448	cheY-homologous receiver domain
UGYR_RS05195	SM00850	LytTr DNA-binding domain
UGYR_RS05300	SM00278	Helix-hairpin-helix DNA-binding motif class 1
UGYR_RS05300	SM00292	breast cancer carboxy-terminal domain
UGYR_RS05300	SM00532	Ligase N family
UGYR_RS05305	SM00771	ZipA, C-terminal domain (FtsZ-binding)
UGYR_RS05340	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS05385	SM01130	UGYR_RS05385
UGYR_RS05420	SM00919	Malic enzyme, NAD binding domain
UGYR_RS05420	SM01274	UGYR_RS05420
UGYR_RS05440	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
UGYR_RS05460	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS05460	SM00448	cheY-homologous receiver domain
UGYR_RS05480	SM00830	Chorismate mutase type II
UGYR_RS05530	SM01130	UGYR_RS05530
UGYR_RS05590	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS05625	SM00924	MgtE intracellular N domain
UGYR_RS05680	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS05680	SM00387	Histidine kinase-like ATPases
UGYR_RS05680	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS05685	SM00448	cheY-homologous receiver domain
UGYR_RS05685	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS05700	SM00046	Diacylglycerol kinase catalytic domain (presumed)
UGYR_RS05785	SM00857	Resolvase, N terminal domain
UGYR_RS05795	SM00247	Beta/gamma crystallins
UGYR_RS05805	SM00116	Domain in cystathionine beta-synthase and other proteins.
UGYR_RS05805	SM01240	UGYR_RS05805
UGYR_RS05820	SM00564	beta-propeller repeat
UGYR_RS05840	SM00530	Helix-turn-helix XRE-family like proteins 
UGYR_RS05845	SM00028	Tetratricopeptide repeats
UGYR_RS05855	SM00562	UGYR_RS05855
UGYR_RS05870	SM01359	UGYR_RS05870
UGYR_RS05870	SM01360	UGYR_RS05870
UGYR_RS05900	SM00271	DnaJ molecular chaperone homology domain
UGYR_RS05995	SM00938	Nitrogen regulatory protein P-II
UGYR_RS06005	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS06005	SM00448	cheY-homologous receiver domain
UGYR_RS06015	SM00387	Histidine kinase-like ATPases
UGYR_RS06015	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS06030	SM01211	UGYR_RS06030
UGYR_RS06035	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS06090	SM00358	Double-stranded RNA binding motif
UGYR_RS06090	SM00535	Ribonuclease III family
UGYR_RS06135	SM00487	DEAD-like helicases superfamily
UGYR_RS06135	SM00490	helicase superfamily c-terminal domain
UGYR_RS06140	SM00248	ankyrin repeats
UGYR_RS06155	SM00986	Uracil DNA glycosylase superfamily
UGYR_RS06155	SM00987	UreE urease accessory protein, C-terminal domain 
UGYR_RS06255	SM00487	DEAD-like helicases superfamily
UGYR_RS06255	SM00490	helicase superfamily c-terminal domain
UGYR_RS06365	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS06400	SM00357	Cold shock protein domain
UGYR_RS06445	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS06470	SM00347	helix_turn_helix multiple antibiotic resistance protein
UGYR_RS06490	SM00967	RNA 2'-O ribose methyltransferase substrate binding
UGYR_RS06500	SM01144	UGYR_RS06500
UGYR_RS06505	SM00881	CoA binding domain
UGYR_RS06510	SM00155	Phospholipase D. Active site motifs.
UGYR_RS06545	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS06545	SM00930	UGYR_RS06545
UGYR_RS06585	SM01322	UGYR_RS06585
UGYR_RS06605	SM00977	TilS substrate C-terminal domain
UGYR_RS06630	SM00481	DNA polymerase alpha chain like domain
UGYR_RS06660	SM00935	Outer membrane protein (OmpH-like)
UGYR_RS06670	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
UGYR_RS06715	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
UGYR_RS06760	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
UGYR_RS06760	SM00475	5'-3' exonuclease
UGYR_RS06800	SM00925	MltA specific insert domain
UGYR_RS06820	SM00646	UGYR_RS06820
UGYR_RS06885	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
UGYR_RS06895	SM00927	DNA mismatch repair enzyme MutH
UGYR_RS06915	SM00563	Phosphate acyltransferases
UGYR_RS06920	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS06940	SM00849	Metallo-beta-lactamase superfamily
UGYR_RS06955	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS07000	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS07030	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS07050	SM00937	UGYR_RS07050
UGYR_RS07120	SM01011	Aminopeptidase P, N-terminal domain
UGYR_RS07180	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
UGYR_RS07185	SM00861	Transketolase, pyrimidine binding domain
UGYR_RS07215	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
UGYR_RS07220	SM00731	SprT homologues.
UGYR_RS07245	SM00732	Likely ribonuclease with RNase H fold.
UGYR_RS07280	SM01152	UGYR_RS07280
UGYR_RS07290	SM00729	Elongator protein 3, MiaB family, Radical SAM
UGYR_RS07315	SM00478	endonuclease III
UGYR_RS07315	SM00525	UGYR_RS07315
UGYR_RS07375	SM00420	helix_turn_helix, Deoxyribose operon repressor
UGYR_RS07375	SM01134	UGYR_RS07375
UGYR_RS07380	SM00116	Domain in cystathionine beta-synthase and other proteins.
UGYR_RS07455	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS07465	SM00823	Phosphopantetheine attachment site
UGYR_RS07465	SM00824	Thioesterase
UGYR_RS07470	SM00923	MbtH-like protein
UGYR_RS07580	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS07595	SM00729	Elongator protein 3, MiaB family, Radical SAM
UGYR_RS07605	SM00563	Phosphate acyltransferases
UGYR_RS07610	SM00434	DNA Topoisomerase IV
UGYR_RS07625	SM00387	Histidine kinase-like ATPases
UGYR_RS07625	SM00433	TopoisomeraseII
UGYR_RS07690	SM01118	UGYR_RS07690
UGYR_RS07695	SM00287	Bacterial SH3 domain homologues
UGYR_RS07700	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
UGYR_RS07710	SM00905	Dihydroneopterin aldolase
UGYR_RS07715	SM01207	UGYR_RS07715
UGYR_RS07730	SM00400	zinc finger
UGYR_RS07730	SM00493	UGYR_RS07730
UGYR_RS07730	SM00766	DNA primase DnaG DnaB-binding
UGYR_RS07825	SM00912	haemagglutination activity domain
UGYR_RS07875	SM00858	UGYR_RS07875
UGYR_RS07895	SM00345	helix_turn_helix gluconate operon transcriptional repressor
UGYR_RS07895	SM00895	UGYR_RS07895
UGYR_RS07970	SM00749	bacterial OsmY and nodulation domain
UGYR_RS07985	SM00073	Histidine Phosphotransfer domain
UGYR_RS07985	SM00091	PAS domain
UGYR_RS07985	SM00387	Histidine kinase-like ATPases
UGYR_RS07985	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS07985	SM00448	cheY-homologous receiver domain
UGYR_RS07990	SM00729	Elongator protein 3, MiaB family, Radical SAM
UGYR_RS08040	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
UGYR_RS08045	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
UGYR_RS08080	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS08110	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS08155	SM00642	Alpha-amylase domain
UGYR_RS08165	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS08170	SM00831	Cation transporter/ATPase, N-terminus
UGYR_RS08255	SM00316	Ribosomal protein S1-like RNA-binding domain
UGYR_RS08280	SM00052	Putative diguanylate phosphodiesterase
UGYR_RS08280	SM00267	diguanylate cyclase
UGYR_RS08285	SM00829	Enoylreductase
UGYR_RS08310	SM00878	Biotin carboxylase C-terminal domain
UGYR_RS08350	SM00947	Carbonic anhydrase
UGYR_RS08405	SM01005	Alanine racemase, C-terminal domain
UGYR_RS08410	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS08415	SM00829	Enoylreductase
UGYR_RS08445	SM00563	Phosphate acyltransferases
UGYR_RS08470	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS08515	SM00912	haemagglutination activity domain
UGYR_RS08525	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
UGYR_RS08525	SM00634	Bacterial Ig-like domain (group 1)
UGYR_RS08545	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS08635	SM01018	B12 binding domain
UGYR_RS08640	SM00346	helix_turn_helix isocitrate lyase regulation
UGYR_RS08695	SM00798	AICARFT/IMPCHase bienzyme
UGYR_RS08695	SM00851	MGS-like domain
UGYR_RS08700	SM01209	UGYR_RS08700
UGYR_RS08700	SM01210	UGYR_RS08700
UGYR_RS08710	SM00411	bacterial (prokaryotic) histone like domain
UGYR_RS08765	SM00876	Biotin and Thiamin Synthesis associated domain
UGYR_RS08770	SM00663	RNA polymerase I subunit A N-terminus
UGYR_RS08795	SM00649	Ribosomal protein L11/L12
UGYR_RS08800	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
UGYR_RS08800	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
UGYR_RS08915	SM01060	UGYR_RS08915
UGYR_RS08920	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
UGYR_RS08925	SM01004	Delta-aminolevulinic acid dehydratase
UGYR_RS09020	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09070	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09075	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09125	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09130	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09130	SM00962	SRP54-type protein, GTPase domain
UGYR_RS09130	SM00963	SRP54-type protein, helical bundle domain
UGYR_RS09225	SM00341	Helicase and RNase D C-terminal
UGYR_RS09225	SM00487	DEAD-like helicases superfamily
UGYR_RS09225	SM00490	helicase superfamily c-terminal domain
UGYR_RS09225	SM00956	UGYR_RS09225
UGYR_RS09300	SM01219	UGYR_RS09300
UGYR_RS09400	SM00984	UDP binding domain
UGYR_RS09420	SM00357	Cold shock protein domain
UGYR_RS09420	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09420	SM00959	Rho termination factor, N-terminal domain
UGYR_RS09430	SM00487	DEAD-like helicases superfamily
UGYR_RS09430	SM00490	helicase superfamily c-terminal domain
UGYR_RS09460	SM00495	Chitin-binding domain type 3
UGYR_RS09460	SM01276	UGYR_RS09460
UGYR_RS09490	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09610	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09640	SM00859	Semialdehyde dehydrogenase, NAD binding domain
UGYR_RS09695	SM00487	DEAD-like helicases superfamily
UGYR_RS09695	SM00490	helicase superfamily c-terminal domain
UGYR_RS09700	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS09715	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS09715	SM01086	C-terminal, D2-small domain, of ClpB protein
UGYR_RS09795	SM00448	cheY-homologous receiver domain
UGYR_RS09795	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS09800	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS09800	SM00387	Histidine kinase-like ATPases
UGYR_RS09800	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS09810	SM00971	Serine acetyltransferase, N-terminal
UGYR_RS09830	SM00450	Rhodanese Homology Domain
UGYR_RS09850	SM00829	Enoylreductase
UGYR_RS09890	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
UGYR_RS09890	SM01232	UGYR_RS09890
UGYR_RS09965	SM00052	Putative diguanylate phosphodiesterase
UGYR_RS09965	SM00267	diguanylate cyclase
UGYR_RS09990	SM00532	Ligase N family
UGYR_RS09995	SM00072	Guanylate kinase homologues.
UGYR_RS10000	SM01409	UGYR_RS10000
UGYR_RS10005	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
UGYR_RS10005	SM00954	Region found in RelA / SpoT proteins
UGYR_RS10015	SM00487	DEAD-like helicases superfamily
UGYR_RS10015	SM00490	helicase superfamily c-terminal domain
UGYR_RS10060	SM01230	UGYR_RS10060
UGYR_RS10065	SM00091	PAS domain
UGYR_RS10065	SM00387	Histidine kinase-like ATPases
UGYR_RS10065	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS10070	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS10070	SM00448	cheY-homologous receiver domain
UGYR_RS10075	SM00729	Elongator protein 3, MiaB family, Radical SAM
UGYR_RS10090	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
UGYR_RS10090	SM00474	3'-5' exonuclease
UGYR_RS10090	SM00475	5'-3' exonuclease
UGYR_RS10090	SM00482	DNA polymerase A domain
UGYR_RS10140	SM00345	helix_turn_helix gluconate operon transcriptional repressor
UGYR_RS10140	SM00895	UGYR_RS10140
UGYR_RS10145	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS10165	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS10180	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS10185	SM00327	von Willebrand factor (vWF) type A domain
UGYR_RS10200	SM00344	helix_turn_helix ASNC type
UGYR_RS10210	SM01228	UGYR_RS10210
UGYR_RS10255	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS10290	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS10300	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS10320	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
UGYR_RS10320	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS10355	SM01234	UGYR_RS10355
UGYR_RS10370	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS10370	SM00760	Bacterial dnaA protein helix-turn-helix domain
UGYR_RS10375	SM00480	DNA polymerase III beta subunit
UGYR_RS10385	SM00387	Histidine kinase-like ATPases
UGYR_RS10385	SM00433	TopoisomeraseII
UGYR_RS10485	SM00972	Spore Coat Protein U domain
UGYR_RS10520	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
UGYR_RS10520	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS10520	SM01358	UGYR_RS10520
UGYR_RS10535	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
UGYR_RS10640	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS10640	SM00448	cheY-homologous receiver domain
UGYR_RS10645	SM00387	Histidine kinase-like ATPases
UGYR_RS10675	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS10680	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS10725	SM00028	Tetratricopeptide repeats
UGYR_RS10730	SM00052	Putative diguanylate phosphodiesterase
UGYR_RS10730	SM00267	diguanylate cyclase
UGYR_RS10755	SM00052	Putative diguanylate phosphodiesterase
UGYR_RS10805	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
UGYR_RS10845	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS10865	SM00859	Semialdehyde dehydrogenase, NAD binding domain
UGYR_RS10875	SM00642	Alpha-amylase domain
UGYR_RS10880	SM00642	Alpha-amylase domain
UGYR_RS10905	SM00420	helix_turn_helix, Deoxyribose operon repressor
UGYR_RS10905	SM01134	UGYR_RS10905
UGYR_RS10915	SM00450	Rhodanese Homology Domain
UGYR_RS10920	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS10965	SM00899	UGYR_RS10965
UGYR_RS10970	SM00316	Ribosomal protein S1-like RNA-binding domain
UGYR_RS10970	SM00732	Likely ribonuclease with RNase H fold.
UGYR_RS11000	SM00448	cheY-homologous receiver domain
UGYR_RS11000	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS11005	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS11005	SM00387	Histidine kinase-like ATPases
UGYR_RS11005	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS11020	SM00363	S4 RNA-binding domain
UGYR_RS11065	SM00965	Secretin and TonB N terminus short domain
UGYR_RS11145	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS11180	SM00100	Cyclic nucleotide-monophosphate binding domain
UGYR_RS11180	SM00419	helix_turn_helix, cAMP Regulatory protein
UGYR_RS11245	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS11310	SM00838	Elongation factor G C-terminus
UGYR_RS11310	SM00889	Elongation factor G, domain IV
UGYR_RS11325	SM01403	UGYR_RS11325
UGYR_RS11345	SM01382	UGYR_RS11345
UGYR_RS11345	SM01383	UGYR_RS11345
UGYR_RS11360	SM00322	K homology RNA-binding domain
UGYR_RS11380	SM01374	UGYR_RS11380
UGYR_RS11385	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
UGYR_RS11450	SM00363	S4 RNA-binding domain
UGYR_RS11450	SM01390	UGYR_RS11450
UGYR_RS11455	SM00662	RNA polymerases D
UGYR_RS11465	SM00422	helix_turn_helix, mercury resistance
UGYR_RS11605	SM00883	Chaperonin 10 Kd subunit
UGYR_RS11625	SM00841	Elongation factor P, C-terminal
UGYR_RS11625	SM01185	UGYR_RS11625
UGYR_RS11635	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS11710	SM00479	UGYR_RS11710
UGYR_RS11745	SM00257	Lysin motif
UGYR_RS11745	SM00646	UGYR_RS11745
UGYR_RS11750	SM00853	MutL C terminal dimerisation domain
UGYR_RS11750	SM01340	UGYR_RS11750
UGYR_RS11770	SM00244	prohibitin homologues
UGYR_RS11775	SM00244	prohibitin homologues
UGYR_RS11785	SM00788	Adenylosuccinate synthetase
UGYR_RS11795	SM00316	Ribosomal protein S1-like RNA-binding domain
UGYR_RS11795	SM00357	Cold shock protein domain
UGYR_RS11795	SM00955	UGYR_RS11795
UGYR_RS11800	SM00967	RNA 2'-O ribose methyltransferase substrate binding
UGYR_RS11910	SM00116	Domain in cystathionine beta-synthase and other proteins.
UGYR_RS11910	SM01091	Transporter associated domain
UGYR_RS12000	SM00387	Histidine kinase-like ATPases
UGYR_RS12000	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS12005	SM00448	cheY-homologous receiver domain
UGYR_RS12005	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS12020	SM01103	UGYR_RS12020
UGYR_RS12030	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS12065	SM00316	Ribosomal protein S1-like RNA-binding domain
UGYR_RS12065	SM00322	K homology RNA-binding domain
UGYR_RS12085	SM01387	UGYR_RS12085
UGYR_RS12090	SM00316	Ribosomal protein S1-like RNA-binding domain
UGYR_RS12090	SM00322	K homology RNA-binding domain
UGYR_RS12095	SM00028	Tetratricopeptide repeats
UGYR_RS12100	SM00487	DEAD-like helicases superfamily
UGYR_RS12100	SM00490	helicase superfamily c-terminal domain
UGYR_RS12165	SM00859	Semialdehyde dehydrogenase, NAD binding domain
UGYR_RS12175	SM00072	Guanylate kinase homologues.
UGYR_RS12185	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS12190	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS12275	SM00487	DEAD-like helicases superfamily
UGYR_RS12275	SM00490	helicase superfamily c-terminal domain
UGYR_RS12290	SM00487	DEAD-like helicases superfamily
UGYR_RS12290	SM00490	helicase superfamily c-terminal domain
UGYR_RS12305	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS12425	SM00387	Histidine kinase-like ATPases
UGYR_RS12485	SM00506	Appr-1"-p processing enzyme
UGYR_RS12535	SM00869	Autotransporter beta-domain
UGYR_RS12555	SM00420	helix_turn_helix, Deoxyribose operon repressor
UGYR_RS12555	SM01134	UGYR_RS12555
UGYR_RS12675	SM01120	UGYR_RS12675
UGYR_RS12685	SM00091	PAS domain
UGYR_RS12690	SM00267	diguanylate cyclase
UGYR_RS12735	SM00749	bacterial OsmY and nodulation domain
UGYR_RS12755	SM01133	UGYR_RS12755
UGYR_RS12760	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
UGYR_RS12785	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS12790	SM00530	Helix-turn-helix XRE-family like proteins 
UGYR_RS12795	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS12810	SM00831	Cation transporter/ATPase, N-terminus
UGYR_RS12830	SM00855	Phosphoglycerate mutase family
UGYR_RS12835	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS12835	SM00871	Bacterial transcription activator, effector binding domain
UGYR_RS12845	SM00448	cheY-homologous receiver domain
UGYR_RS12845	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS12875	SM00852	Probable molybdopterin binding domain
UGYR_RS12900	SM00271	DnaJ molecular chaperone homology domain
UGYR_RS12920	SM00904	Riboflavin kinase
UGYR_RS12950	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
UGYR_RS12955	SM00851	MGS-like domain
UGYR_RS12955	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
UGYR_RS12995	SM00650	Ribosomal RNA adenine dimethylases
UGYR_RS13015	SM00271	DnaJ molecular chaperone homology domain
UGYR_RS13025	SM00487	DEAD-like helicases superfamily
UGYR_RS13025	SM00490	helicase superfamily c-terminal domain
UGYR_RS13030	SM00486	DNA polymerase type-B family
UGYR_RS13040	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS13075	SM01329	UGYR_RS13075
UGYR_RS13080	SM00917	LeuA allosteric (dimerisation) domain
UGYR_RS13105	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS13110	SM01321	UGYR_RS13110
UGYR_RS13190	SM00842	Cell division protein FtsA
UGYR_RS13195	SM00864	Tubulin/FtsZ family, GTPase domain
UGYR_RS13195	SM00865	Tubulin/FtsZ family, C-terminal domain
UGYR_RS13215	SM00957	SecA DEAD-like domain
UGYR_RS13215	SM00958	SecA preprotein cross-linking domain
UGYR_RS13240	SM01240	UGYR_RS13240
UGYR_RS13265	SM00644	UGYR_RS13265
UGYR_RS13280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
UGYR_RS13280	SM00895	UGYR_RS13280
UGYR_RS13345	SM00947	Carbonic anhydrase
UGYR_RS13350	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS13410	SM00487	DEAD-like helicases superfamily
UGYR_RS13410	SM00490	helicase superfamily c-terminal domain
UGYR_RS13410	SM00847	Helicase associated domain (HA2)  Add an annotation
UGYR_RS13450	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
UGYR_RS13455	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
UGYR_RS13460	SM00073	Histidine Phosphotransfer domain
UGYR_RS13460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS13460	SM00387	Histidine kinase-like ATPases
UGYR_RS13460	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS13460	SM00448	cheY-homologous receiver domain
UGYR_RS13470	SM00954	Region found in RelA / SpoT proteins
UGYR_RS13485	SM01192	UGYR_RS13485
UGYR_RS13485	SM01193	UGYR_RS13485
UGYR_RS13585	SM00257	Lysin motif
UGYR_RS13595	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
UGYR_RS13595	SM00534	ATPase domain of DNA mismatch repair MUTS family
UGYR_RS13655	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS13655	SM00387	Histidine kinase-like ATPases
UGYR_RS13655	SM00448	cheY-homologous receiver domain
UGYR_RS13660	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS13660	SM00448	cheY-homologous receiver domain
UGYR_RS13715	SM00342	helix_turn_helix, arabinose operon control protein
UGYR_RS13740	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS13815	SM00194	Protein tyrosine phosphatase, catalytic domain
UGYR_RS13815	SM00404	Protein tyrosine phosphatase, catalytic domain motif
UGYR_RS13825	SM00495	Chitin-binding domain type 3
UGYR_RS13880	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS13895	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS13930	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS13940	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
UGYR_RS13990	SM01091	Transporter associated domain
UGYR_RS14000	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS14000	SM00962	SRP54-type protein, GTPase domain
UGYR_RS14000	SM00963	SRP54-type protein, helical bundle domain
UGYR_RS14035	SM00448	cheY-homologous receiver domain
UGYR_RS14035	SM00850	LytTr DNA-binding domain
UGYR_RS14045	SM00830	Chorismate mutase type II
UGYR_RS14050	SM00830	Chorismate mutase type II
UGYR_RS14065	SM00363	S4 RNA-binding domain
UGYR_RS14115	SM00257	Lysin motif
UGYR_RS14120	SM00849	Metallo-beta-lactamase superfamily
UGYR_RS14135	SM00479	UGYR_RS14135
UGYR_RS14175	SM00900	UGYR_RS14175
UGYR_RS14235	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
UGYR_RS14280	SM00346	helix_turn_helix isocitrate lyase regulation
UGYR_RS14325	SM00448	cheY-homologous receiver domain
UGYR_RS14325	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS14330	SM00091	PAS domain
UGYR_RS14330	SM00387	Histidine kinase-like ATPases
UGYR_RS14330	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS14350	SM00642	Alpha-amylase domain
UGYR_RS14380	SM01323	UGYR_RS14380
UGYR_RS14425	SM00861	Transketolase, pyrimidine binding domain
UGYR_RS14440	SM00981	UGYR_RS14440
UGYR_RS14445	SM00448	cheY-homologous receiver domain
UGYR_RS14450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS14450	SM00387	Histidine kinase-like ATPases
UGYR_RS14450	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS14540	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS14540	SM00994	ClpX C4-type zinc finger
UGYR_RS14540	SM01086	C-terminal, D2-small domain, of ClpB protein
UGYR_RS14545	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS14545	SM00464	Found in ATP-dependent protease La (LON)
UGYR_RS14550	SM00411	bacterial (prokaryotic) histone like domain
UGYR_RS14590	SM00344	helix_turn_helix ASNC type
UGYR_RS14595	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS14600	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS14605	SM00938	Nitrogen regulatory protein P-II
UGYR_RS14700	SM00448	cheY-homologous receiver domain
UGYR_RS14700	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS14705	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
UGYR_RS14705	SM00387	Histidine kinase-like ATPases
UGYR_RS14705	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS14710	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS14720	SM00493	UGYR_RS14720
UGYR_RS14725	SM00387	Histidine kinase-like ATPases
UGYR_RS14825	SM00422	helix_turn_helix, mercury resistance
UGYR_RS14835	SM00244	prohibitin homologues
UGYR_RS14845	SM00822	UGYR_RS14845
UGYR_RS14855	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS14870	SM01001	AIR carboxylase
UGYR_RS14885	SM00840	UGYR_RS14885
UGYR_RS14955	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
UGYR_RS14980	SM01236	UGYR_RS14980
UGYR_RS15020	SM00331	Sigma factor PP2C-like phosphatases
UGYR_RS15020	SM00448	cheY-homologous receiver domain
UGYR_RS15065	SM00073	Histidine Phosphotransfer domain
UGYR_RS15065	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
UGYR_RS15065	SM00091	PAS domain
UGYR_RS15065	SM00387	Histidine kinase-like ATPases
UGYR_RS15065	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS15065	SM00448	cheY-homologous receiver domain
UGYR_RS15065	SM01079	UGYR_RS15065
UGYR_RS15070	SM00267	diguanylate cyclase
UGYR_RS15070	SM00448	cheY-homologous receiver domain
UGYR_RS15100	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS15110	SM00357	Cold shock protein domain
UGYR_RS15125	SM00267	diguanylate cyclase
UGYR_RS15135	SM00729	Elongator protein 3, MiaB family, Radical SAM
UGYR_RS15150	SM00936	Penicillin-binding protein 5, C-terminal domain 
UGYR_RS15205	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS15220	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS15235	SM00116	Domain in cystathionine beta-synthase and other proteins.
UGYR_RS15235	SM01091	Transporter associated domain
UGYR_RS15250	SM00729	Elongator protein 3, MiaB family, Radical SAM
UGYR_RS15335	SM01081	Putative carbohydrate binding domain
UGYR_RS15350	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
UGYR_RS15380	SM00448	cheY-homologous receiver domain
UGYR_RS15380	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS15385	SM00387	Histidine kinase-like ATPases
UGYR_RS15385	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS15435	SM00796	Allophanate hydrolase subunit 1
UGYR_RS15440	SM00797	Allophanate hydrolase subunit 2
UGYR_RS15495	SM00861	Transketolase, pyrimidine binding domain
UGYR_RS15510	SM00881	CoA binding domain
UGYR_RS15605	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS15605	SM00387	Histidine kinase-like ATPases
UGYR_RS15605	SM00388	His Kinase A (phosphoacceptor) domain
UGYR_RS15605	SM00448	cheY-homologous receiver domain
UGYR_RS15610	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS15610	SM00448	cheY-homologous receiver domain
UGYR_RS15620	SM00855	Phosphoglycerate mutase family
UGYR_RS15675	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS15695	SM00729	Elongator protein 3, MiaB family, Radical SAM
UGYR_RS15695	SM00876	Biotin and Thiamin Synthesis associated domain
UGYR_RS15715	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS15720	SM00487	DEAD-like helicases superfamily
UGYR_RS15720	SM00490	helicase superfamily c-terminal domain
UGYR_RS15745	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS15755	SM00729	Elongator protein 3, MiaB family, Radical SAM
UGYR_RS15790	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS15805	SM00487	DEAD-like helicases superfamily
UGYR_RS15805	SM00490	helicase superfamily c-terminal domain
UGYR_RS15815	SM00364	Leucine-rich repeats, bacterial type
UGYR_RS15815	SM00365	Leucine-rich repeat, SDS22-like subfamily
UGYR_RS15815	SM00369	Leucine-rich repeats, typical (most populated) subfamily
UGYR_RS15830	SM01118	UGYR_RS15830
UGYR_RS15835	SM00507	HNH nucleases
UGYR_RS15850	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS15875	SM00450	Rhodanese Homology Domain
UGYR_RS15890	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS15925	SM00487	DEAD-like helicases superfamily
UGYR_RS15925	SM00491	UGYR_RS15925
UGYR_RS15940	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS15950	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS15950	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
UGYR_RS15990	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16000	SM00852	Probable molybdopterin binding domain
UGYR_RS16015	SM00829	Enoylreductase
UGYR_RS16040	SM00354	helix_turn _helix lactose operon repressor
UGYR_RS16050	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16065	SM00919	Malic enzyme, NAD binding domain
UGYR_RS16065	SM01274	UGYR_RS16065
UGYR_RS16130	SM01091	Transporter associated domain
UGYR_RS16145	SM01350	UGYR_RS16145
UGYR_RS16215	SM00116	Domain in cystathionine beta-synthase and other proteins.
UGYR_RS16220	SM00936	Penicillin-binding protein 5, C-terminal domain 
UGYR_RS16235	SM00420	helix_turn_helix, Deoxyribose operon repressor
UGYR_RS16235	SM01134	UGYR_RS16235
UGYR_RS16240	SM01133	UGYR_RS16240
UGYR_RS16245	SM00014	Acid phosphatase homologues
UGYR_RS16280	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16305	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS16305	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
UGYR_RS16320	SM00062	Bacterial periplasmic substrate-binding proteins
UGYR_RS16320	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
UGYR_RS16325	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16385	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16390	SM00357	Cold shock protein domain
UGYR_RS16400	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16400	SM01086	C-terminal, D2-small domain, of ClpB protein
UGYR_RS16405	SM00316	Ribosomal protein S1-like RNA-binding domain
UGYR_RS16415	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16420	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16430	SM00344	helix_turn_helix ASNC type
UGYR_RS16435	SM00843	UGYR_RS16435
UGYR_RS16445	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16480	SM00870	UGYR_RS16480
UGYR_RS16500	SM00316	Ribosomal protein S1-like RNA-binding domain
UGYR_RS16505	SM00411	bacterial (prokaryotic) histone like domain
UGYR_RS16510	SM00849	Metallo-beta-lactamase superfamily
UGYR_RS16515	SM00382	ATPases associated with a variety of cellular activities
UGYR_RS16525	SM01150	UGYR_RS16525
UGYR_RS16530	SM00357	Cold shock protein domain
UGYR_RS16535	SM00357	Cold shock protein domain
UGYR_RS16590	SM00849	Metallo-beta-lactamase superfamily
UGYR_RS16625	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS16630	SM00421	helix_turn_helix, Lux Regulon
UGYR_RS16640	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS16645	SM00862	Transcriptional regulatory protein, C terminal
UGYR_RS16675	SM00869	Autotransporter beta-domain
UGYR_RS16705	SM00862	Transcriptional regulatory protein, C terminal
