locus-tag	class	description
LOR96_RS00010	COG0592	DNA-directed DNA polymerase activity
LOR96_RS00020	COG0187	DNA topoisomerase II activity
LOR96_RS00025	COG0561	phosphatase activity
LOR96_RS00030	COG0823	Involved in the tonB-independent uptake of proteins
LOR96_RS00035	COG5645	(Lipo)protein
LOR96_RS00050	COG0569	domain protein
LOR96_RS00050	COG2985	domain, Protein
LOR96_RS00055	COG3977	Valine--pyruvate aminotransferase
LOR96_RS00060	COG2885	chlorophyll binding
LOR96_RS00080	COG2818	Glycosylase
LOR96_RS00130	COG2213	PTS system mannitol-specific
LOR96_RS00130	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_RS00140	COG3722	fumarate hydratase activity
LOR96_RS00150	COG2258	MOSC domain
LOR96_RS00155	COG0840	transmembrane signaling receptor activity
LOR96_RS00160	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LOR96_RS00175	COG0437	4 iron, 4 sulfur cluster binding
LOR96_RS00180	COG2864	formate dehydrogenase
LOR96_RS00190	COG1921	L-seryl-tRNASec selenium transferase activity
LOR96_RS00195	COG3276	selenocysteine insertion sequence binding
LOR96_RS00200	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
LOR96_RS00210	COG3274	enterobacterial common antigen metabolic process
LOR96_RS00220	COG0582	viral genome integration into host DNA
LOR96_RS00255	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LOR96_RS00260	COG2986	histidine ammonia-lyase
LOR96_RS00280	COG2194	sulfuric ester hydrolase activity
LOR96_RS00285	COG2197	response regulator
LOR96_RS00290	COG3851	Histidine kinase
LOR96_RS00295	COG2271	Major facilitator Superfamily
LOR96_RS00305	COG0747	negative chemotaxis
LOR96_RS00310	COG0601	transmembrane transport
LOR96_RS00315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LOR96_RS00320	COG0444	Belongs to the ABC transporter superfamily
LOR96_RS00325	COG4608	Belongs to the ABC transporter superfamily
LOR96_RS00330	COG2194	sulfuric ester hydrolase activity
LOR96_RS00355	COG1215	transferase activity, transferring glycosyl groups
LOR96_RS00360	COG1215	transferase activity, transferring glycosyl groups
LOR96_RS00365	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LOR96_RS00370	COG3118	belongs to the thioredoxin family
LOR96_RS00370	COG0457	Tetratricopeptide repeat
LOR96_RS00375	COG2199	diguanylate cyclase activity
LOR96_RS00375	COG2200	EAL domain
LOR96_RS00380	COG1301	dicarboxylic acid transport
LOR96_RS00385	COG0612	Peptidase, M16
LOR96_RS00390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LOR96_RS00395	COG1942	4-Oxalocrotonate Tautomerase
LOR96_RS00400	COG2200	EAL domain
LOR96_RS00405	COG2134	cdp-diacylglycerol pyrophosphatase
LOR96_RS00410	COG1295	ribonuclease BN
LOR96_RS00420	COG1301	dicarboxylic acid transport
LOR96_RS00425	COG0626	cystathionine gamma-synthase activity
LOR96_RS00435	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LOR96_RS00440	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LOR96_RS00445	COG0339	signal peptide processing
LOR96_RS00450	COG0742	ribosomal rna small subunit methyltransferase
LOR96_RS00460	COG0589	response to stress
LOR96_RS00470	COG0306	phosphate transporter
LOR96_RS00475	COG2081	HI0933 family
LOR96_RS00485	COG1247	-acetyltransferase
LOR96_RS00495	COG1741	Belongs to the pirin family
LOR96_RS00500	COG1609	Transcriptional regulator
LOR96_RS00505	COG2610	gluconate transmembrane transporter activity
LOR96_RS00510	COG3265	gluconokinase activity
LOR96_RS00515	COG2095	MarC family integral membrane protein
LOR96_RS00520	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LOR96_RS00525	COG3275	phosphorelay sensor kinase activity
LOR96_RS00530	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LOR96_RS00535	COG1523	belongs to the glycosyl hydrolase 13 family
LOR96_RS00540	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LOR96_RS00545	COG0297	glycogen (starch) synthase activity
LOR96_RS00550	COG0058	SHG alpha-glucan phosphorylase activity
LOR96_RS00555	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LOR96_RS00560	COG1349	DNA-binding transcription factor activity
LOR96_RS00565	COG0705	Rhomboid family
LOR96_RS00575	COG2909	trisaccharide binding
LOR96_RS00580	COG0058	SHG alpha-glucan phosphorylase activity
LOR96_RS00585	COG1640	4-alpha-glucanotransferase
LOR96_RS00595	COG1040	competence protein
LOR96_RS00600	COG0596	Alpha beta hydrolase
LOR96_RS00620	COG1918	ferrous iron import across plasma membrane
LOR96_RS00625	COG2183	response to ionizing radiation
LOR96_RS00650	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LOR96_RS00665	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LOR96_RS00675	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LOR96_RS00680	COG1011	Hydrolase
LOR96_RS00690	COG0494	nUDIX hydrolase
LOR96_RS00695	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LOR96_RS00720	COG4796	Type ii and iii secretion system protein
LOR96_RS00725	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LOR96_RS00745	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LOR96_RS00755	COG0180	Tryptophanyl-tRNA synthetase
LOR96_RS00775	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LOR96_RS00780	COG0402	S-adenosylhomocysteine deaminase activity
LOR96_RS00785	COG0738	Major facilitator superfamily
LOR96_RS00800	COG1609	Transcriptional regulator
LOR96_RS00805	COG1486	melibiose metabolic process
LOR96_RS00810	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LOR96_RS00825	COG1289	transmembrane transporter activity
LOR96_RS00830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LOR96_RS00835	COG1765	OsmC-like protein
LOR96_RS00860	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LOR96_RS00865	COG3954	Phosphoribulokinase
LOR96_RS00875	COG0429	hydrolase of the alpha beta-hydrolase fold
LOR96_RS00885	COG0859	PFAM glycosyl transferase family 9
LOR96_RS00890	COG1216	Glycosyl transferase, family 2
LOR96_RS00895	COG0488	(ABC) transporter
LOR96_RS00900	COG2249	NAD(P)H dehydrogenase (quinone) activity
LOR96_RS00910	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LOR96_RS00915	COG1047	Peptidyl-prolyl cis-trans
LOR96_RS00925	COG0545	Peptidyl-prolyl cis-trans isomerase
LOR96_RS00930	COG2964	Protein conserved in bacteria
LOR96_RS00940	COG2923	Belongs to the DsrF TusC family
LOR96_RS00945	COG2168	tRNA wobble position uridine thiolation
LOR96_RS00950	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LOR96_RS00955	COG0049	tRNA binding
LOR96_RS00965	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LOR96_RS00980	COG0051	transcription antitermination factor activity, RNA binding
LOR96_RS00985	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LOR96_RS00995	COG0089	rRNA binding
LOR96_RS01000	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LOR96_RS01005	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LOR96_RS01010	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LOR96_RS01020	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LOR96_RS01025	COG0255	Belongs to the universal ribosomal protein uL29 family
LOR96_RS01030	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LOR96_RS01035	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LOR96_RS01045	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LOR96_RS01070	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LOR96_RS01075	COG1841	ribosomal large subunit assembly
LOR96_RS01080	COG0200	Binds to the 23S rRNA
LOR96_RS01085	COG0201	protein transport
LOR96_RS01090	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LOR96_RS01095	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LOR96_RS01105	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LOR96_RS01115	COG0203	ribosomal protein L17
LOR96_RS01120	COG0789	Transcriptional regulator
LOR96_RS01125	COG3036	rescue of stalled ribosome
LOR96_RS01130	COG1970	mechanosensitive ion channel activity
LOR96_RS01140	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LOR96_RS01140	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LOR96_RS01145	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LOR96_RS01150	COG0242	peptide deformylase activity
LOR96_RS01155	COG0758	DNA mediated transformation
LOR96_RS01160	COG2922	Belongs to the Smg family
LOR96_RS01165	COG0551	DNA topoisomerase type I activity
LOR96_RS01170	COG0009	L-threonylcarbamoyladenylate synthase
LOR96_RS01180	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LOR96_RS01210	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LOR96_RS01215	COG3162	membrane
LOR96_RS01220	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LOR96_RS01225	COG1301	dicarboxylic acid transport
LOR96_RS01235	COG2391	methyltransferase activity
LOR96_RS01240	COG0425	Belongs to the sulfur carrier protein TusA family
LOR96_RS01245	COG1086	Polysaccharide biosynthesis protein
LOR96_RS01250	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LOR96_RS01255	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LOR96_RS01260	COG2089	acid synthase
LOR96_RS01280	COG1083	cytidylyl-transferase
LOR96_RS01280	COG2755	lipolytic protein G-D-S-L family
LOR96_RS01285	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_RS01305	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LOR96_RS01305	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LOR96_RS01310	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LOR96_RS01330	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LOR96_RS01350	COG1309	transcriptional regulator
LOR96_RS01355	COG4232	protein-disulfide reductase activity
LOR96_RS01365	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LOR96_RS01395	COG1509	lysine 2,3-aminomutase activity
LOR96_RS01405	COG3397	chitin binding
LOR96_RS01425	COG3188	usher protein
LOR96_RS01445	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LOR96_RS01450	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LOR96_RS01455	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LOR96_RS01460	COG1053	succinate dehydrogenase
LOR96_RS01465	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LOR96_RS01470	COG3264	Mechanosensitive ion channel
LOR96_RS01470	COG1511	domain protein
LOR96_RS01475	COG0688	phosphatidylethanolamine metabolic process
LOR96_RS01480	COG1162	GTPase activity
LOR96_RS01485	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LOR96_RS01505	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LOR96_RS01510	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LOR96_RS01510	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LOR96_RS01515	COG0802	atpase or kinase
LOR96_RS01520	COG0860	N-Acetylmuramoyl-L-alanine amidase
LOR96_RS01530	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LOR96_RS01540	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LOR96_RS01545	COG0330	HflC and HflK could
LOR96_RS01550	COG0330	HflC and HflK could
LOR96_RS01555	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
LOR96_RS01560	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LOR96_RS01565	COG1959	2 iron, 2 sulfur cluster binding
LOR96_RS01570	COG0557	exoribonuclease II activity
LOR96_RS01575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LOR96_RS01595	COG3121	Chaperone
LOR96_RS01600	COG3188	usher protein
LOR96_RS01620	COG1073	alpha beta
LOR96_RS01630	COG0360	Binds together with S18 to 16S ribosomal RNA
LOR96_RS01635	COG2965	DNA replication, synthesis of RNA primer
LOR96_RS01640	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LOR96_RS01645	COG0359	binds to the 23S rRNA
LOR96_RS01650	COG3061	Opacity-associated protein A
LOR96_RS01655	COG0545	Peptidyl-prolyl cis-trans isomerase
LOR96_RS01665	COG0737	Belongs to the 5'-nucleotidase family
LOR96_RS01670	COG1218	3'(2'),5'-bisphosphate nucleotidase
LOR96_RS01675	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
LOR96_RS01685	COG1253	flavin adenine dinucleotide binding
LOR96_RS01690	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LOR96_RS01695	COG0729	surface antigen
LOR96_RS01700	COG2911	Protein conserved in bacteria
LOR96_RS01705	COG2105	PFAM AIG2 family protein
LOR96_RS01710	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LOR96_RS01720	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LOR96_RS01735	COG3423	Transcriptional regulator
LOR96_RS01750	COG0142	geranyltranstransferase activity
LOR96_RS01765	COG0697	spore germination
LOR96_RS01770	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LOR96_RS01775	COG0642	Histidine kinase
LOR96_RS01780	COG0745	RESPONSE REGULATOR receiver
LOR96_RS01785	COG2027	D-alanyl-D-alanine carboxypeptidase
LOR96_RS01795	COG1534	Rna-binding protein
LOR96_RS01800	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LOR96_RS01810	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LOR96_RS01815	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LOR96_RS01820	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LOR96_RS01840	COG0195	Participates in both transcription termination and antitermination
LOR96_RS01850	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LOR96_RS01865	COG1185	polyribonucleotide nucleotidyltransferase activity
LOR96_RS01875	COG0513	Belongs to the DEAD box helicase family
LOR96_RS01880	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LOR96_RS01895	COG0826	peptidase U32
LOR96_RS01900	COG0826	peptidase U32
LOR96_RS01905	COG3154	lipid carrier protein
LOR96_RS01910	COG3153	acetyltransferase
LOR96_RS01915	COG2827	Endonuclease containing a URI domain
LOR96_RS01920	COG0531	amino acid
LOR96_RS01925	COG1982	Orn Lys Arg decarboxylase major
LOR96_RS01935	COG3787	Belongs to the UPF0306 family
LOR96_RS01940	COG0702	epimerase
LOR96_RS01945	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LOR96_RS01950	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
LOR96_RS01955	COG3454	Phosphonate metabolism
LOR96_RS01960	COG4778	phosphonate C-P lyase system protein PhnL
LOR96_RS01965	COG4107	phosphonate C-P lyase system protein PhnK
LOR96_RS01970	COG3627	carbon phosphorus lyase activity
LOR96_RS01975	COG3626	phosphonate metabolism
LOR96_RS01980	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
LOR96_RS01985	COG3624	Phosphonate C-P lyase system protein PhnG
LOR96_RS02005	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
LOR96_RS02020	COG2927	DNA polymerase III (CHI subunit)
LOR96_RS02025	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LOR96_RS02030	COG0795	lipopolysaccharide-transporting ATPase activity
LOR96_RS02035	COG0795	lipopolysaccharide-transporting ATPase activity
LOR96_RS02075	COG3077	Addiction module antitoxin, RelB DinJ family
LOR96_RS02180	COG5492	domain, Protein
LOR96_RS02200	COG3119	arylsulfatase activity
LOR96_RS02205	COG1349	DNA-binding transcription factor activity
LOR96_RS02215	COG2222	sugar isomerase
LOR96_RS02220	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_RS02225	COG3715	PTS system
LOR96_RS02230	COG3716	PTS system mannose fructose sorbose family IID component
LOR96_RS02240	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LOR96_RS02250	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_RS02260	COG0641	radical SAM
LOR96_RS02265	COG3119	arylsulfatase activity
LOR96_RS02290	COG0859	PFAM glycosyl transferase family 9
LOR96_RS02305	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_RS02310	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LOR96_RS02320	COG2376	Dihydroxyacetone kinase
LOR96_RS02325	COG1461	Dihydroxyacetone kinase
LOR96_RS02330	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
LOR96_RS02330	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_RS02330	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LOR96_RS02370	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
LOR96_RS02385	COG2823	Periplasmic or secreted lipoprotein
LOR96_RS02395	COG4667	esterase of the alpha-beta hydrolase superfamily
LOR96_RS02400	COG0084	hydrolase, TatD family'
LOR96_RS02405	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LOR96_RS02420	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LOR96_RS02430	COG3726	membrane protein affecting hemolysin expression
LOR96_RS02435	COG0560	Phosphoserine phosphatase
LOR96_RS02450	COG0488	(ABC) transporter
LOR96_RS02475	COG0741	lytic transglycosylase activity
LOR96_RS02480	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
LOR96_RS02485	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
LOR96_RS02490	COG0406	alpha-ribazole phosphatase activity
LOR96_RS02495	COG3708	Transcriptional regulator
LOR96_RS02495	COG2207	Transcriptional regulator
LOR96_RS02500	COG3045	CreA protein
LOR96_RS02505	COG0745	RESPONSE REGULATOR receiver
LOR96_RS02540	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LOR96_RS02545	COG0521	Mo-molybdopterin cofactor biosynthetic process
LOR96_RS02550	COG0477	Major facilitator Superfamily
LOR96_RS02560	COG1584	GPR1 FUN34 yaaH family protein
LOR96_RS02565	COG0443	Heat shock 70 kDa protein
LOR96_RS02575	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LOR96_RS02580	COG0583	DNA-binding transcription factor activity
LOR96_RS02590	COG0196	riboflavin kinase activity
LOR96_RS02600	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LOR96_RS02605	COG1047	Peptidyl-prolyl cis-trans
LOR96_RS02610	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LOR96_RS02625	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LOR96_RS02635	COG2966	Psort location CytoplasmicMembrane, score
LOR96_RS02660	COG2967	ApaG domain
LOR96_RS02665	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LOR96_RS02670	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LOR96_RS02680	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LOR96_RS02690	COG0564	pseudouridine synthase activity
LOR96_RS02695	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LOR96_RS02700	COG0417	DNA replication proofreading
LOR96_RS02705	COG0586	Pfam SNARE associated Golgi protein
LOR96_RS02715	COG1178	ABC-type Fe3 transport system permease component
LOR96_RS02720	COG4143	(ABC) transporter
LOR96_RS02735	COG2814	Major facilitator Superfamily
LOR96_RS02745	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LOR96_RS02750	COG0473	3-isopropylmalate dehydrogenase activity
LOR96_RS02765	COG1022	Amp-dependent synthetase and ligase
LOR96_RS02770	COG0028	Belongs to the TPP enzyme family
LOR96_RS02795	COG0275	rRNA processing
LOR96_RS02800	COG3116	cell division
LOR96_RS02805	COG0768	penicillin binding
LOR96_RS02810	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LOR96_RS02815	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LOR96_RS02830	COG0772	Belongs to the SEDS family
LOR96_RS02835	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LOR96_RS02840	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LOR96_RS02850	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LOR96_RS02855	COG0849	cell division
LOR96_RS02860	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LOR96_RS02885	COG0494	nUDIX hydrolase
LOR96_RS02905	COG0516	GMP reductase activity
LOR96_RS02910	COG1459	type II secretion system
LOR96_RS02915	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LOR96_RS02920	COG4969	Belongs to the N-Me-Phe pilin family
LOR96_RS02935	COG3725	Membrane protein required for beta-lactamase induction
LOR96_RS02940	COG1113	amino acid transport
LOR96_RS02945	COG2186	Transcriptional regulator
LOR96_RS02950	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
LOR96_RS02955	COG0508	dehydrogenase complex catalyzes the overall conversion of
LOR96_RS02960	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LOR96_RS02970	COG1049	propionate catabolic process, 2-methylcitrate cycle
LOR96_RS02975	COG3112	Uncharacterised protein family (UPF0231)
LOR96_RS02990	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LOR96_RS03000	COG2132	Multicopper oxidase
LOR96_RS03010	COG0288	reversible hydration of carbon dioxide
LOR96_RS03015	COG1131	(ABC) transporter
LOR96_RS03020	COG0842	Transport permease protein
LOR96_RS03025	COG0726	polysaccharide deacetylase
LOR96_RS03030	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
LOR96_RS03035	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LOR96_RS03040	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LOR96_RS03045	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LOR96_RS03050	COG0617	tRNA 3'-terminal CCA addition
LOR96_RS03065	COG1489	DNA binding
LOR96_RS03070	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LOR96_RS03075	COG1643	Atp-dependent helicase
LOR96_RS03080	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LOR96_RS03085	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LOR96_RS03095	COG0316	Belongs to the HesB IscA family
LOR96_RS03100	COG2860	membrane
LOR96_RS03110	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LOR96_RS03115	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LOR96_RS03120	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LOR96_RS03130	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LOR96_RS03135	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LOR96_RS03140	COG3956	TIGRFAM MazG family protein
LOR96_RS03145	COG0504	CTP synthase activity
LOR96_RS03155	COG0602	queuosine metabolic process
LOR96_RS03160	COG0720	synthase
LOR96_RS03165	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LOR96_RS03175	COG0175	sulfate reduction
LOR96_RS03190	COG2234	aminopeptidase activity
LOR96_RS03195	COG1648	precorrin-2 dehydrogenase activity
LOR96_RS03195	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LOR96_RS03200	COG0175	sulfate reduction
LOR96_RS03205	COG2895	sulfate adenylyltransferase (ATP) activity
LOR96_RS03210	COG0529	Catalyzes the synthesis of activated sulfate
LOR96_RS03220	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LOR96_RS03230	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LOR96_RS03235	COG0585	pseudouridine synthase activity
LOR96_RS03240	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LOR96_RS03255	COG1388	LysM domain
LOR96_RS03255	COG4942	peptidase
LOR96_RS03260	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LOR96_RS03265	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LOR96_RS03335	COG0784	Response regulator, receiver
LOR96_RS03335	COG2205	protein histidine kinase activity
LOR96_RS03355	COG0741	lytic transglycosylase activity
LOR96_RS03485	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LOR96_RS03505	COG3397	chitin binding
LOR96_RS03515	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LOR96_RS03560	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LOR96_RS03570	COG3031	protein transport across the cell outer membrane
LOR96_RS03595	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
LOR96_RS03595	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
LOR96_RS03610	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LOR96_RS03615	COG2137	regulation of response to DNA damage stimulus
LOR96_RS03620	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LOR96_RS03625	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LOR96_RS03665	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LOR96_RS03670	COG1238	metal cluster binding
LOR96_RS03675	COG2918	glutathione biosynthetic process
LOR96_RS03680	COG1854	S-ribosylhomocysteine lyase activity
LOR96_RS03685	COG4536	flavin adenine dinucleotide binding
LOR96_RS03690	COG4137	Cytochrome C assembly protein
LOR96_RS03695	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LOR96_RS03705	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LOR96_RS03710	COG0336	Belongs to the RNA methyltransferase TrmD family
LOR96_RS03715	COG0335	large ribosomal subunit rRNA binding
LOR96_RS03720	COG3137	Salt-induced outer membrane protein
LOR96_RS03725	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LOR96_RS03730	COG3279	Response regulator of the LytR AlgR family
LOR96_RS03735	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LOR96_RS03740	COG1605	Chorismate mutase
LOR96_RS03740	COG0287	Prephenate dehydrogenase
LOR96_RS03745	COG1605	Chorismate mutase
LOR96_RS03745	COG0077	Prephenate dehydratase
LOR96_RS03755	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LOR96_RS03760	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LOR96_RS03765	COG0564	pseudouridine synthase activity
LOR96_RS03770	COG1496	oxidoreductase activity
LOR96_RS03775	COG0542	response to heat
LOR96_RS03810	COG3021	interspecies interaction between organisms
LOR96_RS03815	COG0741	lytic transglycosylase activity
LOR96_RS03815	COG1388	LysM domain
LOR96_RS03825	COG2226	methyltransferase
LOR96_RS03835	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LOR96_RS03845	COG1960	acyl-CoA dehydrogenase activity
LOR96_RS03850	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LOR96_RS03855	COG0121	glutamine amidotransferase
LOR96_RS03860	COG3034	peptidoglycan biosynthetic process
LOR96_RS03870	COG1805	sodium ion transport
LOR96_RS03875	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LOR96_RS03880	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LOR96_RS03885	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LOR96_RS03895	COG1477	protein flavinylation
LOR96_RS03900	COG2991	Protein conserved in bacteria
LOR96_RS03910	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LOR96_RS03915	COG2195	Cleaves the N-terminal amino acid of tripeptides
LOR96_RS03920	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LOR96_RS03925	COG1073	alpha beta
LOR96_RS03940	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LOR96_RS03975	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LOR96_RS03995	COG4126	flavin adenine dinucleotide binding
LOR96_RS04005	COG2974	May be involved in recombination
LOR96_RS04010	COG1940	carbohydrate kinase activity
LOR96_RS04015	COG0419	ATPase involved in DNA repair
LOR96_RS04020	COG0420	3'-5' exonuclease activity
LOR96_RS04025	COG0745	RESPONSE REGULATOR receiver
LOR96_RS04030	COG5002	protein histidine kinase activity
LOR96_RS04045	COG1113	amino acid transport
LOR96_RS04050	COG0366	Alpha amylase catalytic
LOR96_RS04055	COG0300	oxidoreductase activity
LOR96_RS04060	COG0450	alkyl hydroperoxide reductase
LOR96_RS04065	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
LOR96_RS04080	COG1862	Preprotein translocase
LOR96_RS04085	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LOR96_RS04090	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LOR96_RS04095	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LOR96_RS04100	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LOR96_RS04100	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LOR96_RS04105	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LOR96_RS04115	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LOR96_RS04120	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LOR96_RS04125	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LOR96_RS04130	COG0142	geranyltranstransferase activity
LOR96_RS04165	COG0693	protein deglycase activity
LOR96_RS04170	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LOR96_RS04175	COG1666	GTP binding
LOR96_RS04180	COG2814	Major facilitator Superfamily
LOR96_RS04190	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LOR96_RS04195	COG1845	cytochrome c oxidase, subunit III
LOR96_RS04200	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LOR96_RS04205	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LOR96_RS04215	COG2223	nitrite transmembrane transporter activity
LOR96_RS04220	COG3056	Lipoprotein
LOR96_RS04225	COG0271	Belongs to the BolA IbaG family
LOR96_RS04235	COG0740	serine-type endopeptidase activity
LOR96_RS04240	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LOR96_RS04245	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LOR96_RS04250	COG0776	regulation of translation
LOR96_RS04255	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LOR96_RS04260	COG1555	photosystem II stabilization
LOR96_RS04265	COG0824	Thioesterase
LOR96_RS04270	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LOR96_RS04275	COG4533	DNA binding
LOR96_RS04290	COG1522	sequence-specific DNA binding
LOR96_RS04295	COG1132	(ABC) transporter
LOR96_RS04300	COG1132	(ABC) transporter
LOR96_RS04305	COG0347	Belongs to the P(II) protein family
LOR96_RS04310	COG0004	ammonium transporteR
LOR96_RS04315	COG1946	Acyl-CoA thioesterase
LOR96_RS04320	COG3695	enzyme binding
LOR96_RS04345	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LOR96_RS04350	COG0254	rRNA binding
LOR96_RS04355	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LOR96_RS04360	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_RS04365	COG1309	transcriptional regulator
LOR96_RS04370	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
LOR96_RS04375	COG1196	nuclear chromosome segregation
LOR96_RS04375	COG3264	Mechanosensitive ion channel
LOR96_RS04390	COG2832	Protein of unknown function (DUF454)
LOR96_RS04395	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LOR96_RS04435	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LOR96_RS04440	COG0326	Molecular chaperone. Has ATPase activity
LOR96_RS04455	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
LOR96_RS04460	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LOR96_RS04465	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LOR96_RS04465	COG4651	solute:proton antiporter activity
LOR96_RS04470	COG0737	Belongs to the 5'-nucleotidase family
LOR96_RS04475	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LOR96_RS04480	COG3735	TraB family
LOR96_RS04485	COG2217	Heavy metal translocating P-type atpase
LOR96_RS04490	COG0789	Transcriptional regulator
LOR96_RS04495	COG1585	Membrane protein implicated in regulation of membrane protease activity
LOR96_RS04500	COG0330	HflC and HflK could
LOR96_RS04505	COG3118	belongs to the thioredoxin family
LOR96_RS04510	COG0300	oxidoreductase activity
LOR96_RS04515	COG2755	lipolytic protein G-D-S-L family
LOR96_RS04520	COG4181	ATPase activity
LOR96_RS04525	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LOR96_RS04530	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LOR96_RS04535	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LOR96_RS04540	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LOR96_RS04545	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LOR96_RS04570	COG3188	usher protein
LOR96_RS04575	COG3121	Chaperone
LOR96_RS04605	COG2501	S4 domain
LOR96_RS04610	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LOR96_RS04625	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LOR96_RS04630	COG1393	Belongs to the ArsC family
LOR96_RS04640	COG1022	Amp-dependent synthetase and ligase
LOR96_RS04665	COG3038	cytochrome b561
LOR96_RS04695	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LOR96_RS04705	COG1215	transferase activity, transferring glycosyl groups
LOR96_RS04725	COG3250	beta-galactosidase activity
LOR96_RS04740	COG1309	transcriptional regulator
LOR96_RS04770	COG2197	response regulator
LOR96_RS04775	COG1278	Cold shock
LOR96_RS04795	COG3706	GGDEF domain
LOR96_RS04805	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LOR96_RS04815	COG2921	Belongs to the UPF0250 family
LOR96_RS04820	COG1686	Belongs to the peptidase S11 family
LOR96_RS04825	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LOR96_RS04830	COG0772	Belongs to the SEDS family
LOR96_RS04835	COG0768	penicillin binding
LOR96_RS04840	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LOR96_RS04845	COG0799	negative regulation of ribosome biogenesis
LOR96_RS04850	COG0582	viral genome integration into host DNA
LOR96_RS04910	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LOR96_RS04975	COG0305	Participates in initiation and elongation during chromosome replication
LOR96_RS05000	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LOR96_RS05075	COG0616	signal peptide processing
LOR96_RS05115	COG4386	tail sheath protein
LOR96_RS05155	COG3299	homolog of phage Mu protein gp47
LOR96_RS05170	COG5301	cellulose 1,4-beta-cellobiosidase activity
LOR96_RS05180	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LOR96_RS05185	COG1466	dna polymerase III delta subunit
LOR96_RS05190	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
LOR96_RS05200	COG2888	peptidyl-tyrosine sulfation
LOR96_RS05205	COG1126	abc transporter atp-binding protein
LOR96_RS05210	COG0765	amino acid transport
LOR96_RS05215	COG0765	amino acid transport
LOR96_RS05225	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LOR96_RS05230	COG4535	Mg2 and Co2 transporter CorC
LOR96_RS05235	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LOR96_RS05240	COG1702	phosphate starvation-inducible protein PhoH
LOR96_RS05245	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LOR96_RS05250	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LOR96_RS05285	COG0367	asparagine synthase
LOR96_RS05290	COG0647	UMP catabolic process
LOR96_RS05295	COG1846	Transcriptional regulator
LOR96_RS05295	COG1940	carbohydrate kinase activity
LOR96_RS05300	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LOR96_RS05310	COG1263	PTS System
LOR96_RS05310	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_RS05310	COG2190	(PTS) system
LOR96_RS05335	COG0735	belongs to the Fur family
LOR96_RS05345	COG0840	transmembrane signaling receptor activity
LOR96_RS05355	COG0596	Alpha beta hydrolase
LOR96_RS05360	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
LOR96_RS05365	COG0033	Phosphoglucomutase
LOR96_RS05375	COG0745	RESPONSE REGULATOR receiver
LOR96_RS05380	COG2205	protein histidine kinase activity
LOR96_RS05385	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
LOR96_RS05390	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
LOR96_RS05410	COG3272	Protein of unknown function (DUF1722)
LOR96_RS05415	COG0415	Belongs to the DNA photolyase family
LOR96_RS05420	COG5212	phosphodiesterase
LOR96_RS05425	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LOR96_RS05430	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LOR96_RS05435	COG1984	allophanate hydrolase subunit 2
LOR96_RS05440	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LOR96_RS05475	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LOR96_RS05480	COG1053	succinate dehydrogenase
LOR96_RS05485	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LOR96_RS05490	COG0567	Dehydrogenase, E1 component
LOR96_RS05495	COG0508	dehydrogenase complex catalyzes the overall conversion of
LOR96_RS05500	COG0045	succinate-CoA ligase (ADP-forming) activity
LOR96_RS05505	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LOR96_RS05510	COG0737	Belongs to the 5'-nucleotidase family
LOR96_RS05515	COG1271	oxidase subunit
LOR96_RS05520	COG1294	oxidase, subunit
LOR96_RS05525	COG4890	Cyd operon protein YbgT
LOR96_RS05530	COG3790	cyd operon protein YbgE
LOR96_RS05535	COG0824	Thioesterase
LOR96_RS05540	COG0811	peptide transport
LOR96_RS05545	COG0848	biopolymer transport protein
LOR96_RS05550	COG3064	Membrane
LOR96_RS05550	COG3064	Membrane
LOR96_RS05555	COG0823	Involved in the tonB-independent uptake of proteins
LOR96_RS05560	COG2885	chlorophyll binding
LOR96_RS05565	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
LOR96_RS05605	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LOR96_RS05615	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_RS05615	COG2205	protein histidine kinase activity
LOR96_RS05625	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LOR96_RS05630	COG0588	phosphoglycerate mutase activity
LOR96_RS05640	COG2017	converts alpha-aldose to the beta-anomer
LOR96_RS05650	COG1085	galactose-1-phosphate uridylyltransferase
LOR96_RS05655	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LOR96_RS05670	COG2005	Transcriptional regulator
LOR96_RS05670	COG3585	molybdate ion transport
LOR96_RS05680	COG0725	ABC transporter, periplasmic molybdate-binding protein
LOR96_RS05685	COG4149	molybdate abc transporter
LOR96_RS05695	COG0561	phosphatase activity
LOR96_RS05700	COG2706	6-phosphogluconolactonase activity
LOR96_RS05715	COG0156	8-amino-7-oxononanoate synthase activity
LOR96_RS05720	COG2226	methyltransferase
LOR96_RS05735	COG0556	nucleotide-excision repair
LOR96_RS05740	COG4628	conserved protein (DUF2132)
LOR96_RS05755	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_RS05760	COG1120	ATPase activity
LOR96_RS05765	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LOR96_RS05770	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LOR96_RS05780	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LOR96_RS05785	COG0314	molybdopterin synthase activity
LOR96_RS05790	COG0670	Belongs to the BI1 family
LOR96_RS05795	COG0842	Transport permease protein
LOR96_RS05800	COG0842	Transport permease protein
LOR96_RS05805	COG1131	(ABC) transporter
LOR96_RS05810	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_RS05815	COG1309	transcriptional regulator
LOR96_RS05820	COG0513	Belongs to the DEAD box helicase family
LOR96_RS05825	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LOR96_RS05835	COG1686	Belongs to the peptidase S11 family
LOR96_RS05840	COG0277	FAD linked oxidase domain protein
LOR96_RS05860	COG2261	transglycosylase associated protein
LOR96_RS05870	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
LOR96_RS05880	COG3639	organic phosphonate transmembrane transporter activity
LOR96_RS05885	COG4807	Protein conserved in bacteria
LOR96_RS05890	COG2897	thiosulfate sulfurtransferase activity
LOR96_RS05895	COG1732	Glycine betaine
LOR96_RS05900	COG1174	glycine betaine transport
LOR96_RS05905	COG1125	glycine betaine transport
LOR96_RS05910	COG1174	glycine betaine transport
LOR96_RS05915	COG0531	amino acid
LOR96_RS05920	COG1982	Orn Lys Arg decarboxylase major
LOR96_RS05930	COG0697	spore germination
LOR96_RS05945	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LOR96_RS05950	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
LOR96_RS05955	COG1126	abc transporter atp-binding protein
LOR96_RS05960	COG0765	amino acid transport
LOR96_RS05965	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_RS05985	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LOR96_RS05990	COG2239	Acts as a magnesium transporter
LOR96_RS05995	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LOR96_RS06000	COG0488	(ABC) transporter
LOR96_RS06005	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LOR96_RS06010	COG0303	'Molybdopterin
LOR96_RS06030	COG0583	DNA-binding transcription factor activity
LOR96_RS06035	COG0477	Major facilitator Superfamily
LOR96_RS06040	COG0302	gtp cyclohydrolase
LOR96_RS06045	COG2311	Membrane
LOR96_RS06070	COG2949	membrane
LOR96_RS06075	COG0281	malic enzyme
LOR96_RS06085	COG0583	DNA-binding transcription factor activity
LOR96_RS06095	COG1346	cytolysis
LOR96_RS06100	COG1380	Effector of murein hydrolase LrgA
LOR96_RS06110	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LOR96_RS06110	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LOR96_RS06115	COG0489	protein tyrosine kinase activity
LOR96_RS06120	COG0572	uridine kinase
LOR96_RS06125	COG0717	Belongs to the dCTP deaminase family
LOR96_RS06130	COG2982	Protein involved in outer membrane biogenesis
LOR96_RS06135	COG3069	C4-dicarboxylate transmembrane transporter activity
LOR96_RS06140	COG1253	flavin adenine dinucleotide binding
LOR96_RS06145	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LOR96_RS06150	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LOR96_RS06155	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LOR96_RS06165	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LOR96_RS06165	COG0140	phosphoribosyl-ATP diphosphatase activity
LOR96_RS06175	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LOR96_RS06185	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LOR96_RS06185	COG0131	Imidazoleglycerol-phosphate dehydratase
LOR96_RS06190	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LOR96_RS06195	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LOR96_RS06210	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LOR96_RS06215	COG0625	glutathione transferase activity
LOR96_RS06230	COG0626	cystathionine gamma-synthase activity
LOR96_RS06240	COG1686	Belongs to the peptidase S11 family
LOR96_RS06245	COG1760	l-serine dehydratase
LOR96_RS06250	COG0814	amino acid
LOR96_RS06255	COG1349	DNA-binding transcription factor activity
LOR96_RS06265	COG0671	phosphoesterase, PA-phosphatase related
LOR96_RS06275	COG2985	domain, Protein
LOR96_RS06275	COG0569	domain protein
LOR96_RS06295	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LOR96_RS06300	COG3842	ATPase activity
LOR96_RS06305	COG1176	ABC-type spermidine putrescine transport system, permease component I
LOR96_RS06310	COG1177	transmembrane transport
LOR96_RS06325	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_RS06330	COG4160	amino acid transport
LOR96_RS06335	COG4215	(ABC) transporter
LOR96_RS06340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_RS06345	COG1126	abc transporter atp-binding protein
LOR96_RS06355	COG0393	Putative heavy-metal-binding
LOR96_RS06360	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LOR96_RS06365	COG0702	epimerase
LOR96_RS06370	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LOR96_RS06375	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LOR96_RS06380	COG1151	hydroxylamine reductase activity
LOR96_RS06385	COG2431	L-lysine efflux transmembrane transporter activity
LOR96_RS06390	COG3593	DNA synthesis involved in DNA repair
LOR96_RS06395	COG2990	Protein conserved in bacteria
LOR96_RS06400	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_RS06410	COG1278	Cold shock
LOR96_RS06415	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LOR96_RS06420	COG0542	response to heat
LOR96_RS06425	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LOR96_RS06435	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LOR96_RS06445	COG0492	ferredoxin-NADP+ reductase activity
LOR96_RS06450	COG1522	sequence-specific DNA binding
LOR96_RS06455	COG1674	ftsk spoiiie
LOR96_RS06455	COG3107	peptidoglycan biosynthetic process
LOR96_RS06460	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LOR96_RS06465	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LOR96_RS06470	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LOR96_RS06475	COG2814	Major facilitator Superfamily
LOR96_RS06480	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LOR96_RS06485	COG1882	Formate acetyltransferase
LOR96_RS06490	COG2116	formate transmembrane transporter activity
LOR96_RS06495	COG1944	ATP diphosphatase activity
LOR96_RS06500	COG0252	asparaginase activity
LOR96_RS06510	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LOR96_RS06520	COG0539	negative regulation of cytoplasmic translation
LOR96_RS06530	COG2333	competence protein COMEC
LOR96_RS06530	COG0658	competence protein
LOR96_RS06540	COG1663	tetraacyldisaccharide 4'-kinase activity
LOR96_RS06545	COG5383	Protein conserved in bacteria
LOR96_RS06555	COG1278	Cold shock
LOR96_RS06560	COG2835	tetraacyldisaccharide 4'-kinase activity
LOR96_RS06565	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LOR96_RS06570	COG3173	Aminoglycoside phosphotransferase
LOR96_RS06575	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LOR96_RS06580	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LOR96_RS06585	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
LOR96_RS06595	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LOR96_RS06600	COG2989	Protein conserved in bacteria
LOR96_RS06605	COG3108	Peptidase M15
LOR96_RS06610	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LOR96_RS06615	COG1448	Aminotransferase
LOR96_RS06630	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LOR96_RS06635	COG0308	aminopeptidase N
LOR96_RS06640	COG0167	dihydroorotate dehydrogenase activity
LOR96_RS06650	COG3217	Mosc domain protein beta barrel domain protein
LOR96_RS06650	COG0633	Ferredoxin
LOR96_RS06655	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LOR96_RS06655	COG0116	Belongs to the methyltransferase superfamily
LOR96_RS06660	COG0488	(ABC) transporter
LOR96_RS06665	COG2995	paraquat-inducible protein a
LOR96_RS06670	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LOR96_RS06670	COG3008	intermembrane lipid transfer
LOR96_RS06675	COG3009	Protein conserved in bacteria
LOR96_RS06680	COG3130	regulation of translation
LOR96_RS06685	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LOR96_RS06690	COG1067	ATP-dependent peptidase activity
LOR96_RS06695	COG3120	sequence-specific DNA binding
LOR96_RS06705	COG5404	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division
LOR96_RS06710	COG3070	regulator of competence-specific genes
LOR96_RS06715	COG1289	transmembrane transporter activity
LOR96_RS06720	COG3304	Inner membrane component domain
LOR96_RS06725	COG0210	DNA helicase
LOR96_RS06730	COG1803	Methylglyoxal synthase
LOR96_RS06740	COG1832	CoA-binding protein
LOR96_RS06745	COG3785	DNA binding
LOR96_RS06750	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LOR96_RS06755	COG1254	Belongs to the acylphosphatase family
LOR96_RS06760	COG2920	part of a sulfur-relay system
LOR96_RS06770	COG0288	reversible hydration of carbon dioxide
LOR96_RS06790	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
LOR96_RS06795	COG2943	transferase activity, transferring hexosyl groups
LOR96_RS06810	COG0675	Transposase, IS605 OrfB family
LOR96_RS06825	COG1560	Kdo2-lipid A biosynthetic process
LOR96_RS06835	COG0628	permease
LOR96_RS06860	COG0418	dihydroorotase activity
LOR96_RS06865	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LOR96_RS06875	COG1530	ribonuclease E activity
LOR96_RS06880	COG0564	pseudouridine synthase activity
LOR96_RS06885	COG0424	maF-like protein
LOR96_RS06890	COG1399	metal-binding, possibly nucleic acid-binding protein
LOR96_RS06895	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LOR96_RS06905	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LOR96_RS06910	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LOR96_RS06920	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LOR96_RS06925	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LOR96_RS06930	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LOR96_RS06935	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LOR96_RS06940	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LOR96_RS06945	COG0470	DNA polymerase III
LOR96_RS06950	COG0084	hydrolase, TatD family'
LOR96_RS06955	COG1263	PTS System
LOR96_RS06955	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_RS06960	COG0537	adenosine 5'-monophosphoramidase activity
LOR96_RS06965	COG5633	Lipoprotein
LOR96_RS06970	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
LOR96_RS06985	COG3150	esterase
LOR96_RS06990	COG1252	NADH dehydrogenase
LOR96_RS06995	COG3134	Outer membrane lipoprotein
LOR96_RS07000	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LOR96_RS07005	COG4591	ABC-type transport system involved in lipoprotein release permease component
LOR96_RS07015	COG4591	ABC-type transport system involved in lipoprotein release permease component
LOR96_RS07035	COG2850	peptidyl-arginine hydroxylation
LOR96_RS07040	COG2205	protein histidine kinase activity
LOR96_RS07045	COG0745	RESPONSE REGULATOR receiver
LOR96_RS07055	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LOR96_RS07060	COG2915	High frequency lysogenization protein hflD homolog
LOR96_RS07065	COG0482	sulfurtransferase activity
LOR96_RS07075	COG1187	pseudouridine synthase activity
LOR96_RS07080	COG0538	isocitrate dehydrogenase activity
LOR96_RS07085	COG2771	luxR family
LOR96_RS07090	COG3916	Acyl-homoserine-lactone synthase
LOR96_RS07095	COG2723	6-phospho-beta-galactosidase activity
LOR96_RS07105	COG0339	signal peptide processing
LOR96_RS07110	COG0840	transmembrane signaling receptor activity
LOR96_RS07135	COG0675	Transposase, IS605 OrfB family
LOR96_RS07145	COG4565	transcriptional regulatory protein
LOR96_RS07150	COG3290	protein histidine kinase activity
LOR96_RS07155	COG0471	metal ion transport
LOR96_RS07195	COG4977	sequence-specific DNA binding
LOR96_RS07200	COG1702	phosphate starvation-inducible protein PhoH
LOR96_RS07205	COG0387	Pfam Sodium calcium exchanger
LOR96_RS07210	COG2375	cellular response to nickel ion
LOR96_RS07215	COG3850	Histidine kinase
LOR96_RS07225	COG1294	oxidase, subunit
LOR96_RS07230	COG1271	oxidase subunit
LOR96_RS07235	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LOR96_RS07240	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LOR96_RS07245	COG3138	arginine N-succinyltransferase
LOR96_RS07255	COG3724	N-succinylarginine dihydrolase activity
LOR96_RS07275	COG1228	amidohydrolase
LOR96_RS07285	COG0402	S-adenosylhomocysteine deaminase activity
LOR96_RS07305	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
LOR96_RS07310	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
LOR96_RS07315	COG3383	formate dehydrogenase (NAD+) activity
LOR96_RS07320	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_RS07325	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
LOR96_RS07335	COG3260	NADH ubiquinone oxidoreductase 20
LOR96_RS07340	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_RS07345	COG3261	NADH dehydrogenase
LOR96_RS07345	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
LOR96_RS07350	COG0650	Formate hydrogenlyase subunit 4
LOR96_RS07355	COG0651	ATP synthesis coupled electron transport
LOR96_RS07360	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_RS07370	COG0375	protein maturation
LOR96_RS07375	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
LOR96_RS07380	COG0298	carbon dioxide binding
LOR96_RS07385	COG0409	Hydrogenase expression formation protein
LOR96_RS07390	COG0309	Hydrogenase expression formation protein (HypE)
LOR96_RS07425	COG2207	Transcriptional regulator
LOR96_RS07425	COG3708	Transcriptional regulator
LOR96_RS07430	COG0012	GTP binding
LOR96_RS07440	COG0193	aminoacyl-tRNA hydrolase activity
LOR96_RS07450	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LOR96_RS07460	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LOR96_RS07465	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LOR96_RS07470	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LOR96_RS07475	COG2890	protein-(glutamine-N5) methyltransferase activity
LOR96_RS07490	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LOR96_RS07495	COG0659	secondary active sulfate transmembrane transporter activity
LOR96_RS07500	COG3706	GGDEF domain
LOR96_RS07525	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LOR96_RS07535	COG3381	protein complex oligomerization
LOR96_RS07555	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LOR96_RS07565	COG0673	inositol 2-dehydrogenase activity
LOR96_RS07570	COG0728	peptidoglycan biosynthetic process
LOR96_RS07595	COG3102	Protein conserved in bacteria
LOR96_RS07600	COG3142	Participates in the control of copper homeostasis
LOR96_RS07615	COG3788	relative of glutathione S-transferase, MAPEG superfamily
LOR96_RS07620	COG1801	Protein of unknown function DUF72
LOR96_RS07630	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LOR96_RS07635	COG0494	nUDIX hydrolase
LOR96_RS07645	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LOR96_RS07655	COG2255	four-way junction helicase activity
LOR96_RS07660	COG3104	oligopeptide transport
LOR96_RS07665	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LOR96_RS07670	COG1121	(ABC) transporter
LOR96_RS07675	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
LOR96_RS07680	COG0739	heme binding
LOR96_RS07685	COG1560	Kdo2-lipid A biosynthetic process
LOR96_RS07690	COG0469	pyruvate kinase activity
LOR96_RS07695	COG1737	Transcriptional regulator
LOR96_RS07700	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LOR96_RS07705	COG0800	Aldolase
LOR96_RS07715	COG2076	Multidrug Resistance protein
LOR96_RS07720	COG0251	oxidation-reduction process
LOR96_RS07725	COG1199	ATP-dependent helicase activity
LOR96_RS07730	COG1214	PFAM Peptidase M22, glycoprotease
LOR96_RS07735	COG3065	identical protein binding
LOR96_RS07740	COG0318	PFAM AMP-dependent synthetase and ligase
LOR96_RS07745	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LOR96_RS07750	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LOR96_RS07755	COG2894	cell division
LOR96_RS07760	COG0850	regulation of cytokinetic process
LOR96_RS07765	COG3100	YcgL domain-containing protein
LOR96_RS07770	COG0179	Fumarylacetoacetate (FAA) hydrolase
LOR96_RS07775	COG2983	Belongs to the UPF0260 family
LOR96_RS07795	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LOR96_RS07805	COG2719	SpoVR family
LOR96_RS07810	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LOR96_RS07815	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LOR96_RS07820	COG2814	Major facilitator Superfamily
LOR96_RS07830	COG2200	EAL domain
LOR96_RS07830	COG2202	Pas domain
LOR96_RS07830	COG2199	diguanylate cyclase activity
LOR96_RS07850	COG2718	Belongs to the UPF0229 family
LOR96_RS07855	COG2766	serine protein kinase
LOR96_RS07865	COG3713	MltA-interacting MipA family protein
LOR96_RS07870	COG2194	sulfuric ester hydrolase activity
LOR96_RS07885	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LOR96_RS07890	COG3139	Protein of unknown function (DUF1315)
LOR96_RS07895	COG1335	isochorismatase
LOR96_RS07900	COG0252	asparaginase activity
LOR96_RS07905	COG0616	signal peptide processing
LOR96_RS07910	COG0778	Nitroreductase
LOR96_RS07920	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LOR96_RS07930	COG0494	nUDIX hydrolase
LOR96_RS07935	COG0708	Exodeoxyribonuclease III
LOR96_RS07965	COG0788	formyltetrahydrofolate deformylase activity
LOR96_RS07975	COG1752	Esterase of the alpha-beta hydrolase superfamily
LOR96_RS07980	COG0745	RESPONSE REGULATOR receiver
LOR96_RS08000	COG1454	alcohol dehydrogenase
LOR96_RS08000	COG1012	belongs to the aldehyde dehydrogenase family
LOR96_RS08010	COG2095	MarC family integral membrane protein
LOR96_RS08015	COG4166	transmembrane transport
LOR96_RS08030	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LOR96_RS08045	COG3099	Belongs to the UPF0263 family
LOR96_RS08050	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LOR96_RS08075	COG2350	Protein conserved in bacteria
LOR96_RS08090	COG3710	Transcriptional regulator
LOR96_RS08125	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LOR96_RS08150	COG0727	PFAM Uncharacterised protein family (UPF0153)
LOR96_RS08155	COG3047	cAMP biosynthetic process
LOR96_RS08170	COG0133	tryptophan synthase activity
LOR96_RS08175	COG0134	indole-3-glycerol-phosphate synthase activity
LOR96_RS08175	COG0135	phosphoribosylanthranilate isomerase activity
LOR96_RS08185	COG0512	Glutamine amidotransferase of anthranilate synthase
LOR96_RS08195	COG0613	PHP domain protein
LOR96_RS08200	COG0009	L-threonylcarbamoyladenylate synthase
LOR96_RS08220	COG1187	pseudouridine synthase activity
LOR96_RS08230	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_RS08235	COG0616	signal peptide processing
LOR96_RS08250	COG0583	DNA-binding transcription factor activity
LOR96_RS08265	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LOR96_RS08275	COG0671	phosphoesterase, PA-phosphatase related
LOR96_RS08280	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
LOR96_RS08285	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LOR96_RS08305	COG0023	Translation Initiation Factor
LOR96_RS08315	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LOR96_RS08320	COG5001	Diguanylate cyclase
LOR96_RS08320	COG5002	protein histidine kinase activity
LOR96_RS08320	COG3447	MASE1 domain protein
LOR96_RS08325	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
LOR96_RS08330	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LOR96_RS08340	COG4659	FMN binding
LOR96_RS08350	COG2207	Transcriptional regulator
LOR96_RS08350	COG3708	Transcriptional regulator
LOR96_RS08365	COG4657	Part of a membrane complex involved in electron transport
LOR96_RS08375	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LOR96_RS08385	COG0673	inositol 2-dehydrogenase activity
LOR96_RS08390	COG0385	Bile acid
LOR96_RS08395	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LOR96_RS08400	COG5339	Protein conserved in bacteria
LOR96_RS08405	COG1482	cell wall glycoprotein biosynthetic process
LOR96_RS08410	COG0114	fumarate hydratase activity
LOR96_RS08420	COG1940	carbohydrate kinase activity
LOR96_RS08425	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LOR96_RS08445	COG1742	UPF0060 membrane protein
LOR96_RS08450	COG4221	oxidoreductase activity
LOR96_RS08455	COG3023	N-Acetylmuramoyl-L-alanine amidase
LOR96_RS08475	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LOR96_RS08515	COG1011	Hydrolase
LOR96_RS08525	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
LOR96_RS08530	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LOR96_RS08535	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LOR96_RS08540	COG0589	response to stress
LOR96_RS08570	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
LOR96_RS08575	COG3623	hexulose-6-phosphate isomerase
LOR96_RS08580	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LOR96_RS08585	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LOR96_RS08595	COG0531	amino acid
LOR96_RS08605	COG0745	RESPONSE REGULATOR receiver
LOR96_RS08610	COG2205	protein histidine kinase activity
LOR96_RS08625	COG2207	Transcriptional regulator
LOR96_RS08630	COG1881	PFAM PEBP family protein
LOR96_RS08640	COG3591	Belongs to the peptidase S1B family
LOR96_RS08645	COG1643	Atp-dependent helicase
LOR96_RS08650	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LOR96_RS08655	COG3784	Protein of unknown function (DUF1318)
LOR96_RS08670	COG2911	Protein conserved in bacteria
LOR96_RS08675	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LOR96_RS08680	COG3187	Heat shock protein
LOR96_RS08685	COG3042	response to heat
LOR96_RS08690	COG1285	pathogenesis
LOR96_RS08700	COG0674	pyruvate-flavodoxin oxidoreductase activity
LOR96_RS08700	COG1013	pyruvate-flavodoxin oxidoreductase activity
LOR96_RS08700	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_RS08700	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LOR96_RS08715	COG4166	transmembrane transport
LOR96_RS08720	COG2866	Carboxypeptidase
LOR96_RS08725	COG4948	Mandelate Racemase Muconate Lactonizing
LOR96_RS08730	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LOR96_RS08740	COG5642	Protein of unknown function (DUF2384)
LOR96_RS08745	COG5654	RES domain protein
LOR96_RS08750	COG3768	UPF0283 membrane protein
LOR96_RS08755	COG3106	COG3106 Predicted ATPase
LOR96_RS08765	COG1983	PspC domain protein
LOR96_RS08775	COG1842	Phage shock protein A
LOR96_RS08780	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LOR96_RS08795	COG4166	transmembrane transport
LOR96_RS08805	COG4171	peptide transport system, permease
LOR96_RS08810	COG4172	Belongs to the ABC transporter superfamily
LOR96_RS08815	COG4172	Belongs to the ABC transporter superfamily
LOR96_RS08825	COG3104	oligopeptide transport
LOR96_RS08835	COG0484	heat shock protein binding
LOR96_RS08880	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LOR96_RS08885	COG3133	Outer membrane lipoprotein
LOR96_RS08890	COG1846	Transcriptional regulator
LOR96_RS08900	COG4989	oxidoreductase activity
LOR96_RS08905	COG3313	Fe-S protein
LOR96_RS08910	COG2194	sulfuric ester hydrolase activity
LOR96_RS08915	COG1309	transcriptional regulator
LOR96_RS08920	COG1902	pentaerythritol trinitrate reductase activity
LOR96_RS08935	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LOR96_RS08940	COG0791	NLP P60 protein
LOR96_RS08945	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LOR96_RS08955	COG1609	Transcriptional regulator
LOR96_RS08960	COG0583	DNA-binding transcription factor activity
LOR96_RS08965	COG2814	Major facilitator Superfamily
LOR96_RS08970	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LOR96_RS08975	COG0307	riboflavin synthase, alpha
LOR96_RS09010	COG1376	ErfK ybiS ycfS ynhG family protein
LOR96_RS09010	COG1388	LysM domain
LOR96_RS09015	COG2166	iron-sulfur cluster assembly
LOR96_RS09025	COG0719	Fe-S assembly protein
LOR96_RS09030	COG0396	ATPase activity
LOR96_RS09035	COG0719	Fe-S assembly protein
LOR96_RS09040	COG0316	Belongs to the HesB IscA family
LOR96_RS09045	COG2050	protein possibly involved in aromatic compounds catabolism
LOR96_RS09050	COG0277	FAD linked oxidase domain protein
LOR96_RS09050	COG0247	lactate metabolic process
LOR96_RS09055	COG0628	permease
LOR96_RS09065	COG0574	Belongs to the PEP-utilizing enzyme family
LOR96_RS09065	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LOR96_RS09070	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LOR96_RS09075	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LOR96_RS09085	COG4771	TonB-dependent receptor
LOR96_RS09090	COG3720	iron ion transport
LOR96_RS09095	COG4558	Periplasmic binding protein
LOR96_RS09100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_RS09105	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LOR96_RS09115	COG0095	Lipoate-protein ligase
LOR96_RS09120	COG0791	NLP P60 protein
LOR96_RS09125	COG2076	Multidrug Resistance protein
LOR96_RS09130	COG2076	Multidrug Resistance protein
LOR96_RS09135	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LOR96_RS09150	COG0463	Glycosyl transferase, family 2
LOR96_RS09155	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LOR96_RS09165	COG4139	cobalamin transport
LOR96_RS09210	COG2184	nucleotidyltransferase activity
LOR96_RS09225	COG2314	TM2 domain
LOR96_RS09230	COG0776	regulation of translation
LOR96_RS09300	COG0803	Belongs to the bacterial solute-binding protein 9 family
LOR96_RS09305	COG1121	(ABC) transporter
LOR96_RS09310	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LOR96_RS09315	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LOR96_RS09320	COG3001	Fructosamine kinase
LOR96_RS09330	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LOR96_RS09335	COG1988	membrane-bound metal-dependent
LOR96_RS09340	COG1823	symporter activity
LOR96_RS09345	COG3023	N-Acetylmuramoyl-L-alanine amidase
LOR96_RS09355	COG2814	Major facilitator Superfamily
LOR96_RS09365	COG0501	Belongs to the peptidase M48B family
LOR96_RS09370	COG0793	Belongs to the peptidase S41A family
LOR96_RS09380	COG1956	GAF domain-containing protein
LOR96_RS09385	COG2995	paraquat-inducible protein a
LOR96_RS09390	COG3008	intermembrane lipid transfer
LOR96_RS09395	COG4251	negative regulation of phosphorylation
LOR96_RS09395	COG2203	Gaf domain
LOR96_RS09395	COG5001	Diguanylate cyclase
LOR96_RS09395	COG3706	GGDEF domain
LOR96_RS09605	COG3772	lysozyme
LOR96_RS09655	COG1674	ftsk spoiiie
LOR96_RS09655	COG1178	ABC-type Fe3 transport system permease component
LOR96_RS09775	COG1276	copper resistance
LOR96_RS09780	COG2372	response to copper ion
LOR96_RS09785	COG1528	Iron-storage protein
LOR96_RS09805	COG1770	oligopeptidase
LOR96_RS09815	COG3097	Belongs to the UPF0267 family
LOR96_RS09820	COG3141	response to X-ray
LOR96_RS09825	COG0513	Belongs to the DEAD box helicase family
LOR96_RS09845	COG0494	nUDIX hydrolase
LOR96_RS09850	COG1760	l-serine dehydratase
LOR96_RS09855	COG1253	flavin adenine dinucleotide binding
LOR96_RS09860	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_RS09860	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_RS09865	COG3715	PTS system
LOR96_RS09870	COG3716	PTS system mannose fructose sorbose family IID component
LOR96_RS09875	COG4811	Protein of unknown function (DUF986)
LOR96_RS09880	COG1971	Probably functions as a manganese efflux pump
LOR96_RS09900	COG1960	acyl-CoA dehydrogenase activity
LOR96_RS09910	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
LOR96_RS09940	COG2226	methyltransferase
LOR96_RS09945	COG0768	penicillin binding
LOR96_RS09950	COG1496	oxidoreductase activity
LOR96_RS09970	COG1113	amino acid transport
LOR96_RS10005	COG2207	Transcriptional regulator
LOR96_RS10025	COG1132	(ABC) transporter
LOR96_RS10035	COG2203	Gaf domain
LOR96_RS10035	COG3706	GGDEF domain
LOR96_RS10035	COG4251	negative regulation of phosphorylation
LOR96_RS10035	COG5001	Diguanylate cyclase
LOR96_RS10055	COG1181	Belongs to the D-alanine--D-alanine ligase family
LOR96_RS10075	COG1278	Cold shock
LOR96_RS10080	COG1278	Cold shock
LOR96_RS10085	COG1278	Cold shock
LOR96_RS10100	COG1917	Cupin 2, conserved barrel domain protein
LOR96_RS10100	COG2169	Transcriptional regulator
LOR96_RS10105	COG1447	Phosphotransferase system cellobiose-specific component IIA
LOR96_RS10110	COG2723	6-phospho-beta-galactosidase activity
LOR96_RS10115	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LOR96_RS10120	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LOR96_RS10125	COG1187	pseudouridine synthase activity
LOR96_RS10135	COG3122	Protein conserved in bacteria
LOR96_RS10140	COG1757	Na H antiporter
LOR96_RS10155	COG2235	arginine
LOR96_RS10170	COG0076	glutamate decarboxylase activity
LOR96_RS10175	COG0531	amino acid
LOR96_RS10210	COG2153	protein acetylation
LOR96_RS10215	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LOR96_RS10245	COG0840	transmembrane signaling receptor activity
LOR96_RS10250	COG2801	Transposase and inactivated derivatives
LOR96_RS10270	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LOR96_RS10275	COG0322	excinuclease ABC activity
LOR96_RS10280	COG2197	response regulator
LOR96_RS10305	COG1113	amino acid transport
LOR96_RS10315	COG0531	amino acid
LOR96_RS10320	COG3710	Transcriptional regulator
LOR96_RS10325	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LOR96_RS10330	COG0506	proline dehydrogenase activity
LOR96_RS10330	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LOR96_RS10330	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LOR96_RS10335	COG1126	abc transporter atp-binding protein
LOR96_RS10340	COG0765	amino acid transport
LOR96_RS10345	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_RS10350	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LOR96_RS10360	COG1191	sigma factor activity
LOR96_RS10400	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LOR96_RS10405	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LOR96_RS10420	COG1677	Flagellar hook-basal body complex protein FliE
LOR96_RS10430	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LOR96_RS10435	COG1317	bacterial-type flagellum organization
LOR96_RS10440	COG1157	protein secretion by the type III secretion system
LOR96_RS10455	COG1580	Controls the rotational direction of flagella during chemotaxis
LOR96_RS10535	COG1558	bacterial-type flagellum-dependent cell motility
LOR96_RS10540	COG1815	bacterial-type flagellum-dependent cell motility
LOR96_RS10550	COG2747	anti-sigma28 factor FlgM
LOR96_RS10555	COG3418	PFAM FlgN family protein
LOR96_RS10565	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LOR96_RS10570	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LOR96_RS10575	COG4935	Belongs to the peptidase S8 family
LOR96_RS10575	COG1404	Belongs to the peptidase S8 family
LOR96_RS10580	COG2197	response regulator
LOR96_RS10595	COG3188	usher protein
LOR96_RS10600	COG3121	Chaperone
LOR96_RS10610	COG3539	Fimbrial protein
LOR96_RS10640	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
LOR96_RS10645	COG0745	RESPONSE REGULATOR receiver
LOR96_RS10655	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LOR96_RS10660	COG0840	transmembrane signaling receptor activity
LOR96_RS10665	COG0840	transmembrane signaling receptor activity
LOR96_RS10670	COG0835	chemotaxis
LOR96_RS10675	COG0643	Histidine kinase
LOR96_RS10675	COG2198	Histidine kinase
LOR96_RS10680	COG1360	Flagellar Motor Protein
LOR96_RS10700	COG0589	response to stress
LOR96_RS10705	COG1285	pathogenesis
LOR96_RS10710	COG0840	transmembrane signaling receptor activity
LOR96_RS10730	COG1609	Transcriptional regulator
LOR96_RS10740	COG0604	alcohol dehydrogenase
LOR96_RS10740	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_RS10740	COG3321	synthase
LOR96_RS10775	COG0582	viral genome integration into host DNA
LOR96_RS10790	COG3423	Transcriptional regulator
LOR96_RS10825	COG3451	type IV secretory pathway VirB4
LOR96_RS10845	COG3736	Type IV secretory pathway, component VirB8
LOR96_RS10860	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
LOR96_RS10875	COG4227	nucleotidyltransferase activity
LOR96_RS10935	COG0471	metal ion transport
LOR96_RS10950	COG3051	citrate lyase alpha subunit
LOR96_RS10955	COG2301	Belongs to the HpcH HpaI aldolase family
LOR96_RS10960	COG3052	prosthetic group binding
LOR96_RS10965	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
LOR96_RS10970	COG3290	protein histidine kinase activity
LOR96_RS10975	COG4565	transcriptional regulatory protein
LOR96_RS10990	COG2271	Major facilitator Superfamily
LOR96_RS10995	COG1840	ABC-type Fe3 transport system, periplasmic component
LOR96_RS11005	COG3842	ATPase activity
LOR96_RS11025	COG1289	transmembrane transporter activity
LOR96_RS11035	COG2925	Exonuclease
LOR96_RS11040	COG0531	amino acid
LOR96_RS11045	COG4771	TonB-dependent receptor
LOR96_RS11055	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_RS11065	COG0833	amino acid
LOR96_RS11070	COG0583	DNA-binding transcription factor activity
LOR96_RS11080	COG2855	membrane
LOR96_RS11085	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LOR96_RS11090	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LOR96_RS11090	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LOR96_RS11090	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LOR96_RS11095	COG1105	Belongs to the carbohydrate kinase PfkB family
LOR96_RS11110	COG3005	denitrification pathway
LOR96_RS11115	COG0243	molybdopterin cofactor binding
LOR96_RS11135	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LOR96_RS11145	COG0246	Mannitol dehydrogenase
LOR96_RS11155	COG0523	cobalamin synthesis protein
LOR96_RS11160	COG0671	phosphoesterase, PA-phosphatase related
LOR96_RS11165	COG0791	NLP P60 protein
LOR96_RS11170	COG2200	EAL domain
LOR96_RS11175	COG4166	transmembrane transport
LOR96_RS11180	COG4174	ABC transporter (Permease)
LOR96_RS11185	COG4239	(ABC) transporter, permease
LOR96_RS11190	COG4172	Belongs to the ABC transporter superfamily
LOR96_RS11200	COG2814	Major facilitator Superfamily
LOR96_RS11205	COG1187	pseudouridine synthase activity
LOR96_RS11210	COG1061	Type III restriction enzyme res subunit
LOR96_RS11225	COG3082	Protein of unknown function (DUF1414)
LOR96_RS11230	COG3083	sulfuric ester hydrolase activity
LOR96_RS11255	COG3778	Protein conserved in bacteria
LOR96_RS11260	COG3299	homolog of phage Mu protein gp47
LOR96_RS11305	COG4386	tail sheath protein
LOR96_RS11355	COG4626	Terminase
LOR96_RS11355	COG1802	Transcriptional regulator
LOR96_RS11380	COG1876	peptidase activity
LOR96_RS11410	COG2815	serine threonine protein kinase
LOR96_RS11410	COG0515	serine threonine protein kinase
LOR96_RS11425	COG1403	HNH endonuclease
LOR96_RS11440	COG4725	Belongs to the MT-A70-like family
LOR96_RS11445	COG4626	Terminase
LOR96_RS11445	COG1802	Transcriptional regulator
LOR96_RS11480	COG5532	Uncharacterized conserved protein (DUF2303)
LOR96_RS11485	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LOR96_RS11535	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LOR96_RS11540	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LOR96_RS11560	COG2223	nitrite transmembrane transporter activity
LOR96_RS11565	COG0642	Histidine kinase
LOR96_RS11565	COG2198	Histidine kinase
LOR96_RS11575	COG0784	Response regulator, receiver
LOR96_RS11575	COG2205	protein histidine kinase activity
LOR96_RS11585	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LOR96_RS11590	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LOR96_RS11600	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LOR96_RS11610	COG4574	serine-type endopeptidase inhibitor activity
LOR96_RS11620	COG2246	polysaccharide biosynthetic process
LOR96_RS11635	COG0814	amino acid
LOR96_RS11660	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LOR96_RS11665	COG0596	Alpha beta hydrolase
LOR96_RS11670	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LOR96_RS11675	COG1169	isochorismate synthase
LOR96_RS11680	COG4575	ribosome binding
LOR96_RS11695	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_RS11700	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LOR96_RS11710	COG0839	Belongs to the complex I subunit 6 family
LOR96_RS11715	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_RS11720	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LOR96_RS11725	COG1034	ATP synthesis coupled electron transport
LOR96_RS11745	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_RS11750	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LOR96_RS11755	COG0583	DNA-binding transcription factor activity
LOR96_RS11760	COG0436	Aminotransferase
LOR96_RS11765	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LOR96_RS11770	COG0471	metal ion transport
LOR96_RS11770	COG0490	domain, Protein
LOR96_RS11780	COG3013	Belongs to the UPF0304 family
LOR96_RS11785	COG3092	negative regulation of chromosome organization
LOR96_RS11795	COG0280	phosphate acetyltransferase
LOR96_RS11795	COG0857	belongs to the CobB CobQ family
LOR96_RS11800	COG1609	Transcriptional regulator
LOR96_RS11815	COG3037	sugar-specific permease SgaT UlaA
LOR96_RS11820	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
LOR96_RS11825	COG0622	Phosphoesterase
LOR96_RS11840	COG0625	glutathione transferase activity
LOR96_RS11845	COG1090	epimerase
LOR96_RS11855	COG4160	amino acid transport
LOR96_RS11860	COG4215	(ABC) transporter
LOR96_RS11875	COG0163	prenyltransferase activity
LOR96_RS11880	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LOR96_RS11885	COG1286	toxin biosynthetic process
LOR96_RS11890	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
LOR96_RS11895	COG0285	dihydrofolate synthase activity
LOR96_RS11905	COG0586	Pfam SNARE associated Golgi protein
LOR96_RS11915	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LOR96_RS11940	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LOR96_RS11945	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LOR96_RS11975	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LOR96_RS11990	COG3101	peptidyl-lysine hydroxylation
LOR96_RS11995	COG0730	response to heat
LOR96_RS12000	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
LOR96_RS12010	COG2890	protein-(glutamine-N5) methyltransferase activity
LOR96_RS12015	COG2840	Smr protein MutS2
LOR96_RS12020	COG2062	phosphohistidine phosphatase, SixA
LOR96_RS12025	COG1250	3-hydroxyacyl-CoA dehydrogenase
LOR96_RS12025	COG1024	Enoyl-CoA hydratase
LOR96_RS12030	COG0183	Belongs to the thiolase family
LOR96_RS12035	COG3691	Protein conserved in bacteria
LOR96_RS12050	COG4235	cytochrome complex assembly
LOR96_RS12050	COG3088	subunit of a heme lyase
LOR96_RS12055	COG3088	subunit of a heme lyase
LOR96_RS12055	COG4235	cytochrome complex assembly
LOR96_RS12060	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LOR96_RS12065	COG1138	Cytochrome C-type biogenesis protein
LOR96_RS12070	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LOR96_RS12075	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LOR96_RS12080	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LOR96_RS12085	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LOR96_RS12100	COG0582	viral genome integration into host DNA
LOR96_RS12105	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LOR96_RS12160	COG2824	Alkylphosphonate utilization operon protein PhnA
LOR96_RS12165	COG2951	lytic endotransglycosylase activity
LOR96_RS12170	COG1598	PFAM Uncharacterised protein family UPF0150
LOR96_RS12180	COG3038	cytochrome b561
LOR96_RS12185	COG0436	Aminotransferase
LOR96_RS12195	COG3275	phosphorelay sensor kinase activity
LOR96_RS12200	COG3279	Response regulator of the LytR AlgR family
LOR96_RS12205	COG2223	nitrite transmembrane transporter activity
LOR96_RS12210	COG0837	glucose binding
LOR96_RS12230	COG1914	H( )-stimulated, divalent metal cation uptake system
LOR96_RS12235	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LOR96_RS12310	COG3530	Putative quorum-sensing-regulated virulence factor
LOR96_RS12315	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LOR96_RS12325	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
LOR96_RS12335	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_RS12350	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LOR96_RS12360	COG4208	sulfate ABC transporter
LOR96_RS12365	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LOR96_RS12370	COG4150	thiosulfate binding
LOR96_RS12380	COG1737	Transcriptional regulator
LOR96_RS12385	COG2731	YhcH YjgK YiaL family protein
LOR96_RS12400	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LOR96_RS12405	COG2837	iron assimilation
LOR96_RS12415	COG3111	PFAM Bacterial OB fold (BOF) protein
LOR96_RS12475	COG1671	Belongs to the UPF0178 family
LOR96_RS12480	COG0281	malic enzyme
LOR96_RS12480	COG0280	phosphate acetyltransferase
LOR96_RS12485	COG0494	nUDIX hydrolase
LOR96_RS12490	COG3005	denitrification pathway
LOR96_RS12495	COG3043	anaerobic respiration
LOR96_RS12500	COG0243	molybdopterin cofactor binding
LOR96_RS12505	COG3062	negative regulation of establishment of protein localization
LOR96_RS12510	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_RS12510	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_RS12515	COG2197	response regulator
LOR96_RS12525	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LOR96_RS12535	COG1605	Chorismate mutase
LOR96_RS12540	COG1393	Belongs to the ArsC family
LOR96_RS12545	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LOR96_RS12550	COG1876	peptidase activity
LOR96_RS12560	COG0400	carboxylic ester hydrolase activity
LOR96_RS12580	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LOR96_RS12585	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LOR96_RS12590	COG2716	regulation of RNA biosynthetic process
LOR96_RS12595	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LOR96_RS12600	COG0628	permease
LOR96_RS12605	COG4783	chaperone-mediated protein folding
LOR96_RS12610	COG1393	Belongs to the ArsC family
LOR96_RS12615	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LOR96_RS12620	COG2233	PERMEase
LOR96_RS12625	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LOR96_RS12630	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LOR96_RS12635	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LOR96_RS12640	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LOR96_RS12650	COG0581	inorganic phosphate transmembrane transporter activity
LOR96_RS12655	COG0573	inorganic phosphate transmembrane transporter activity
LOR96_RS12660	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LOR96_RS12675	COG2239	Acts as a magnesium transporter
LOR96_RS12680	COG0443	Heat shock 70 kDa protein
LOR96_RS12690	COG3121	Chaperone
LOR96_RS12710	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LOR96_RS12720	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LOR96_RS12725	COG0477	Major facilitator Superfamily
LOR96_RS12730	COG2205	protein histidine kinase activity
LOR96_RS12735	COG0745	RESPONSE REGULATOR receiver
LOR96_RS12740	COG3422	double-strand break repair
LOR96_RS12745	COG0826	peptidase U32
LOR96_RS12750	COG1597	lipid kinase activity
LOR96_RS12765	COG0351	phosphomethylpyrimidine kinase
LOR96_RS12780	COG0519	Catalyzes the synthesis of GMP from XMP
LOR96_RS12780	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LOR96_RS12785	COG0517	IMP dehydrogenase activity
LOR96_RS12785	COG0516	GMP reductase activity
LOR96_RS12790	COG1570	exodeoxyribonuclease VII activity
LOR96_RS12795	COG1645	bacterial-type flagellum-dependent swarming motility
LOR96_RS12805	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LOR96_RS12810	COG2976	Protein conserved in bacteria
LOR96_RS12815	COG0124	histidyl-tRNA synthetase
LOR96_RS12835	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LOR96_RS12850	COG4953	penicillin-binding protein 1C
LOR96_RS12855	COG2373	Large extracellular alpha-helical protein
LOR96_RS12870	COG2975	iron-sulfur cluster assembly
LOR96_RS12875	COG0633	Ferredoxin
LOR96_RS12880	COG0443	Heat shock 70 kDa protein
LOR96_RS12895	COG0822	iron-sulfur transferase activity
LOR96_RS12905	COG1959	2 iron, 2 sulfur cluster binding
LOR96_RS12910	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
LOR96_RS12920	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
LOR96_RS12925	COG3683	transport system, periplasmic component
LOR96_RS12930	COG3711	transcriptional antiterminator
LOR96_RS12935	COG2814	Major facilitator Superfamily
LOR96_RS12945	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LOR96_RS12945	COG1017	nitric oxide dioxygenase activity
LOR96_RS12950	COG2188	Transcriptional regulator
LOR96_RS12960	COG3457	Alanine racemase
LOR96_RS12965	COG1735	metal-dependent hydrolase with the TIM-barrel fold
LOR96_RS12980	COG0347	Belongs to the P(II) protein family
LOR96_RS12985	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LOR96_RS12985	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LOR96_RS12990	COG2204	response regulator
LOR96_RS12995	COG3170	Tfp pilus assembly protein FimV
LOR96_RS13000	COG2205	protein histidine kinase activity
LOR96_RS13015	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LOR96_RS13025	COG0560	Phosphoserine phosphatase
LOR96_RS13030	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_RS13030	COG1263	PTS System
LOR96_RS13040	COG1737	Transcriptional regulator
LOR96_RS13045	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LOR96_RS13055	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LOR96_RS13065	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LOR96_RS13080	COG0481	GTPase activity
LOR96_RS13085	COG3086	response to oxidative stress
LOR96_RS13095	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
LOR96_RS13105	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LOR96_RS13115	COG0513	Belongs to the DEAD box helicase family
LOR96_RS13130	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
LOR96_RS13140	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LOR96_RS13145	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LOR96_RS13150	COG0497	DNA recombination
LOR96_RS13155	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LOR96_RS13165	COG2867	negative regulation of translational initiation
LOR96_RS13170	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LOR96_RS13180	COG0582	viral genome integration into host DNA
LOR96_RS13210	COG3596	GTP binding
LOR96_RS13215	COG2378	regulation of single-species biofilm formation
LOR96_RS13225	COG2378	regulation of single-species biofilm formation
LOR96_RS13250	COG2003	Belongs to the UPF0758 family
LOR96_RS13305	COG3121	Chaperone
LOR96_RS13310	COG3188	usher protein
LOR96_RS13335	COG0583	DNA-binding transcription factor activity
LOR96_RS13410	COG1069	ribulokinase activity
LOR96_RS13420	COG1172	Belongs to the binding-protein-dependent transport system permease family
LOR96_RS13425	COG1129	ABC transporter
LOR96_RS13445	COG1620	l-lactate permease
LOR96_RS13450	COG1304	FMN binding
LOR96_RS13455	COG0579	oxidoreductase
LOR96_RS13460	COG1278	Cold shock
LOR96_RS13490	COG1780	Probably involved in ribonucleotide reductase function
LOR96_RS13495	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LOR96_RS13505	COG4175	Glycine betaine
LOR96_RS13510	COG4176	ABC-type proline glycine betaine transport system permease component
LOR96_RS13515	COG2113	Glycine betaine
LOR96_RS13525	COG2814	Major facilitator Superfamily
LOR96_RS13530	COG1846	Transcriptional regulator
LOR96_RS13540	COG1566	PFAM secretion protein HlyD family protein
LOR96_RS13545	COG2814	Major facilitator Superfamily
LOR96_RS13550	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LOR96_RS13555	COG3118	belongs to the thioredoxin family
LOR96_RS13560	COG3148	PFAM DTW domain containing protein
LOR96_RS13565	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LOR96_RS13565	COG1042	CoA-binding domain protein
LOR96_RS13565	COG0045	succinate-CoA ligase (ADP-forming) activity
LOR96_RS13570	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LOR96_RS13575	COG5544	Lipoprotein
LOR96_RS13600	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LOR96_RS13610	COG2011	ABC-type metal ion transport system permease component
LOR96_RS13615	COG1464	Belongs to the NlpA lipoprotein family
LOR96_RS13625	COG1720	tRNA m6t6A37 methyltransferase activity
LOR96_RS13630	COG0442	prolyl-tRNA aminoacylation
LOR96_RS13635	COG3015	lipoprotein NlpE involved in copper resistance
LOR96_RS13645	COG4681	YaeQ
LOR96_RS13655	COG4568	rho-dependent transcription termination
LOR96_RS13670	COG0346	lactoylglutathione lyase activity
LOR96_RS13685	COG0825	malonyl-CoA metabolic process
LOR96_RS13690	COG0587	DNA-directed DNA polymerase activity
LOR96_RS13695	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LOR96_RS13715	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LOR96_RS13720	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
LOR96_RS13730	COG0750	zinc metalloprotease
LOR96_RS13735	COG0575	Belongs to the CDS family
LOR96_RS13755	COG0528	UMP kinase activity
LOR96_RS13760	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LOR96_RS13775	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LOR96_RS13780	COG2171	N-acyltransferase activity
LOR96_RS13795	COG0564	pseudouridine synthase activity
LOR96_RS13800	COG3098	single-species biofilm formation
LOR96_RS13815	COG1611	Belongs to the LOG family
LOR96_RS13825	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
LOR96_RS13830	COG2363	Small membrane protein
LOR96_RS13835	COG0583	DNA-binding transcription factor activity
LOR96_RS13845	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LOR96_RS13850	COG2166	iron-sulfur cluster assembly
LOR96_RS13855	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LOR96_RS13860	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
LOR96_RS13880	COG0860	N-Acetylmuramoyl-L-alanine amidase
LOR96_RS13885	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LOR96_RS13885	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LOR96_RS13890	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LOR96_RS13895	COG1074	ATP-dependent DNA helicase activity
LOR96_RS13900	COG1025	Belongs to the peptidase M16 family
LOR96_RS13905	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LOR96_RS13910	COG4967	type IV pilus modification protein PilV
LOR96_RS13935	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LOR96_RS13940	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
LOR96_RS13950	COG3066	DNA modification
LOR96_RS13955	COG0861	Integral membrane protein TerC family
LOR96_RS13960	COG0667	Aldo Keto reductase
LOR96_RS13965	COG0477	Major facilitator Superfamily
LOR96_RS13970	COG0318	PFAM AMP-dependent synthetase and ligase
LOR96_RS13970	COG0204	Acyl-transferase
LOR96_RS13975	COG1609	Transcriptional regulator
LOR96_RS13985	COG0583	DNA-binding transcription factor activity
LOR96_RS13990	COG0583	DNA-binding transcription factor activity
LOR96_RS14045	COG2165	general secretion pathway protein
LOR96_RS14055	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LOR96_RS14085	COG1127	ABC transporter
LOR96_RS14090	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LOR96_RS14100	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LOR96_RS14110	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LOR96_RS14115	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LOR96_RS14120	COG4974	Belongs to the 'phage' integrase family
LOR96_RS14125	COG0716	FMN binding
LOR96_RS14135	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LOR96_RS14145	COG1272	protein, Hemolysin III
LOR96_RS14165	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LOR96_RS14170	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LOR96_RS14175	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LOR96_RS14180	COG0006	proline dipeptidase activity
LOR96_RS14190	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LOR96_RS14200	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LOR96_RS14205	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LOR96_RS14210	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LOR96_RS14225	COG1279	arginine transmembrane transporter activity
LOR96_RS14235	COG0191	fructose-bisphosphate aldolase activity
LOR96_RS14240	COG0126	phosphoglycerate kinase activity
LOR96_RS14245	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LOR96_RS14250	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LOR96_RS14260	COG1166	arginine decarboxylase activity
LOR96_RS14265	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LOR96_RS14280	COG0640	Transcriptional regulator
LOR96_RS14285	COG3091	SprT-like family
LOR96_RS14290	COG2356	endonuclease I
LOR96_RS14295	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LOR96_RS14300	COG0189	ligase activity
LOR96_RS14305	COG1678	Uncharacterized ACR, COG1678
LOR96_RS14310	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LOR96_RS14315	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LOR96_RS14325	COG2805	Type II/IV secretion system protein
LOR96_RS14330	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LOR96_RS14335	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LOR96_RS14340	COG0762	integral membrane protein
LOR96_RS14345	COG1872	DUF167
LOR96_RS14350	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LOR96_RS14355	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LOR96_RS14370	COG3171	Protein conserved in bacteria
LOR96_RS14380	COG1194	a g-specific adenine glycosylase
LOR96_RS14385	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LOR96_RS14390	COG0741	lytic transglycosylase activity
LOR96_RS14430	COG1105	Belongs to the carbohydrate kinase PfkB family
LOR96_RS14435	COG1882	Formate acetyltransferase
LOR96_RS14440	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LOR96_RS14445	COG0814	amino acid
LOR96_RS14460	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_RS14465	COG1535	isochorismatase
LOR96_RS14465	COG3433	isochorismatase activity
LOR96_RS14470	COG1021	2,3-dihydroxybenzoate-AMP ligase
LOR96_RS14475	COG1169	isochorismate synthase
LOR96_RS14480	COG4592	Periplasmic binding protein
LOR96_RS14490	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_RS14495	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LOR96_RS14500	COG1120	ATPase activity
LOR96_RS14510	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LOR96_RS14515	COG3251	PFAM MbtH domain protein
LOR96_RS14525	COG4774	siderophore transport
LOR96_RS14530	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LOR96_RS14555	COG4964	Belongs to the GSP D family
LOR96_RS14615	COG0848	biopolymer transport protein
LOR96_RS14620	COG0811	peptide transport
LOR96_RS14625	COG0626	cystathionine gamma-synthase activity
LOR96_RS14630	COG0586	Pfam SNARE associated Golgi protein
LOR96_RS14635	COG2207	Transcriptional regulator
LOR96_RS14640	COG1979	alcohol dehydrogenase
LOR96_RS14645	COG0656	L-ascorbic acid biosynthetic process
LOR96_RS14655	COG2132	Multicopper oxidase
LOR96_RS14670	COG2249	NAD(P)H dehydrogenase (quinone) activity
LOR96_RS14675	COG0583	DNA-binding transcription factor activity
LOR96_RS14680	COG0187	DNA topoisomerase II activity
LOR96_RS14685	COG3150	esterase
LOR96_RS14690	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LOR96_RS14695	COG3151	Protein conserved in bacteria
LOR96_RS14700	COG0494	nUDIX hydrolase
LOR96_RS14705	COG1538	Outer membrane efflux protein
LOR96_RS14710	COG5463	Belongs to the UPF0441 family
LOR96_RS14715	COG0754	glutathionylspermidine amidase activity
LOR96_RS14720	COG3384	dioxygenase
LOR96_RS14725	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LOR96_RS14740	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LOR96_RS14740	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LOR96_RS14750	COG3025	triphosphatase activity
LOR96_RS14755	COG4991	sh3 domain protein
LOR96_RS14760	COG0617	tRNA 3'-terminal CCA addition
LOR96_RS14765	COG1968	undecaprenyl-diphosphatase activity
LOR96_RS14770	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LOR96_RS14775	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LOR96_RS14780	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LOR96_RS14785	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LOR96_RS14790	COG0358	DNA primase activity
LOR96_RS14820	COG1028	Short-chain dehydrogenase reductase Sdr
LOR96_RS14850	COG0463	Glycosyl transferase, family 2
LOR96_RS14885	COG3210	domain, Protein
LOR96_RS14890	COG3210	domain, Protein
LOR96_RS14900	COG2831	hemolysin activation secretion protein
LOR96_RS14905	COG0446	pyridine nucleotide-disulphide oxidoreductase
LOR96_RS14905	COG1902	pentaerythritol trinitrate reductase activity
LOR96_RS14920	COG1451	nucleotide metabolic process
LOR96_RS14925	COG0673	inositol 2-dehydrogenase activity
LOR96_RS14930	COG0861	Integral membrane protein TerC family
LOR96_RS14935	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LOR96_RS14945	COG2721	sulfolactate sulfo-lyase activity
LOR96_RS14960	COG2271	Major facilitator Superfamily
LOR96_RS14975	COG0586	Pfam SNARE associated Golgi protein
LOR96_RS14990	COG4575	ribosome binding
LOR96_RS14995	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
LOR96_RS15005	COG2259	Doxx family
LOR96_RS15010	COG0583	DNA-binding transcription factor activity
LOR96_RS15015	COG1741	Belongs to the pirin family
LOR96_RS15030	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LOR96_RS15045	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LOR96_RS15050	COG2823	Periplasmic or secreted lipoprotein
LOR96_RS15055	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LOR96_RS15060	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
LOR96_RS15065	COG5002	protein histidine kinase activity
LOR96_RS15065	COG2198	Histidine kinase
LOR96_RS15065	COG0784	Response regulator, receiver
LOR96_RS15070	COG1242	4 iron, 4 sulfur cluster binding
LOR96_RS15075	COG0070	glutamate synthase
LOR96_RS15075	COG0069	glutamate synthase activity
LOR96_RS15075	COG0067	glutamate synthase
LOR96_RS15080	COG0493	'glutamate synthase
LOR96_RS15090	COG2969	positive regulation of protein catabolic process
LOR96_RS15095	COG0625	glutathione transferase activity
LOR96_RS15100	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LOR96_RS15105	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LOR96_RS15110	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LOR96_RS15115	COG3105	Protein conserved in bacteria
LOR96_RS15120	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LOR96_RS15130	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LOR96_RS15135	COG5007	Belongs to the BolA IbaG family
LOR96_RS15140	COG3113	response to antibiotic
LOR96_RS15145	COG2854	intermembrane phospholipid transfer
LOR96_RS15150	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LOR96_RS15155	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LOR96_RS15160	COG1127	ABC transporter
LOR96_RS15165	COG0530	calcium, potassium:sodium antiporter activity
LOR96_RS15170	COG0517	IMP dehydrogenase activity
LOR96_RS15170	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LOR96_RS15175	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LOR96_RS15180	COG3117	lipopolysaccharide transmembrane transporter activity
LOR96_RS15185	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LOR96_RS15190	COG1137	ATPase activity
LOR96_RS15195	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LOR96_RS15215	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LOR96_RS15220	COG0540	Belongs to the ATCase OTCase family
LOR96_RS15225	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LOR96_RS15235	COG0366	Alpha amylase catalytic
LOR96_RS15240	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LOR96_RS15240	COG1263	PTS System
LOR96_RS15250	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LOR96_RS15260	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LOR96_RS15265	COG3783	Cytochrome b(562)
LOR96_RS15270	COG0312	modulator of DNA gyrase
LOR96_RS15275	COG3028	Belongs to the UPF0307 family
LOR96_RS15280	COG2732	(Barnase) inhibitor
LOR96_RS15285	COG4290	ribonuclease
LOR96_RS15295	COG1289	transmembrane transporter activity
LOR96_RS15300	COG1566	PFAM secretion protein HlyD family protein
LOR96_RS15310	COG0583	DNA-binding transcription factor activity
LOR96_RS15315	COG0312	modulator of DNA gyrase
LOR96_RS15320	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LOR96_RS15325	COG3164	Protein of unknown function
LOR96_RS15335	COG0424	maF-like protein
LOR96_RS15340	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LOR96_RS15345	COG1792	Involved in formation and maintenance of cell shape
LOR96_RS15350	COG1077	Cell shape determining protein MreB Mrl
LOR96_RS15355	COG2199	diguanylate cyclase activity
LOR96_RS15355	COG2200	EAL domain
LOR96_RS15360	COG0604	alcohol dehydrogenase
LOR96_RS15365	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LOR96_RS15370	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
LOR96_RS15380	COG0511	ligase activity, forming carbon-carbon bonds
LOR96_RS15385	COG0439	Biotin carboxylase
LOR96_RS15390	COG3924	membrane
LOR96_RS15395	COG4145	pantothenate transmembrane transporter activity
LOR96_RS15400	COG2264	protein methyltransferase activity
LOR96_RS15405	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LOR96_RS15410	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LOR96_RS15420	COG1560	Kdo2-lipid A biosynthetic process
LOR96_RS15430	COG1346	cytolysis
LOR96_RS15435	COG1380	Effector of murein hydrolase LrgA
LOR96_RS15440	COG0583	DNA-binding transcription factor activity
LOR96_RS15445	COG0025	NhaP-type Na H and K H
LOR96_RS15450	COG2252	PERMEase
LOR96_RS15465	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LOR96_RS15470	COG2315	Protein conserved in bacteria
LOR96_RS15475	COG1448	Aminotransferase
LOR96_RS15500	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LOR96_RS15505	COG0735	belongs to the Fur family
LOR96_RS15510	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LOR96_RS15515	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LOR96_RS15520	COG2937	Belongs to the GPAT DAPAT family
LOR96_RS15540	COG4580	involved in the transport of maltose and maltodextrins
LOR96_RS15555	COG2182	Extracellular solute-binding protein
LOR96_RS15560	COG1175	transmembrane transport
LOR96_RS15565	COG3833	ABC-type maltose transport systems, permease component
LOR96_RS15570	COG3223	Belongs to the PsiE family
LOR96_RS15580	COG0527	aspartate kinase activity
LOR96_RS15595	COG3328	transposase activity
LOR96_RS15605	COG3328	transposase activity
LOR96_RS15630	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LOR96_RS15710	COG0583	DNA-binding transcription factor activity
LOR96_RS15750	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LOR96_RS15790	COG0138	bifunctional purine biosynthesis protein purh
LOR96_RS15795	COG0151	Belongs to the GarS family
LOR96_RS15815	COG1515	deoxyribonuclease V activity
LOR96_RS15820	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LOR96_RS15825	COG2816	NAD+ diphosphatase activity
LOR96_RS15830	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
LOR96_RS15845	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LOR96_RS15850	COG2104	thiamine diphosphate biosynthetic process
LOR96_RS15855	COG2022	thiamine diphosphate biosynthetic process
LOR96_RS15865	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LOR96_RS15870	COG0085	RNA polymerase activity
LOR96_RS15875	COG0222	ribosome binding
LOR96_RS15880	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LOR96_RS15890	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LOR96_RS15895	COG0250	Participates in transcription elongation, termination and antitermination
LOR96_RS15940	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LOR96_RS15965	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
LOR96_RS15970	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LOR96_RS15975	COG1739	Uncharacterized protein family UPF0029
LOR96_RS15985	COG1024	Enoyl-CoA hydratase
LOR96_RS15985	COG1250	3-hydroxyacyl-CoA dehydrogenase
LOR96_RS15995	COG0543	2 iron, 2 sulfur cluster binding
LOR96_RS16010	COG0250	Participates in transcription elongation, termination and antitermination
LOR96_RS16025	COG0805	protein transport
LOR96_RS16030	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LOR96_RS16035	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LOR96_RS16040	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LOR96_RS16045	COG3165	ubiquinone biosynthetic process from chorismate
LOR96_RS16050	COG2226	methyltransferase
LOR96_RS16055	COG1322	Protein conserved in bacteria
LOR96_RS16060	COG0586	Pfam SNARE associated Golgi protein
LOR96_RS16065	COG1966	Carbon starvation protein
LOR96_RS16080	COG0412	Dienelactone hydrolase
LOR96_RS16085	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LOR96_RS16090	COG0583	DNA-binding transcription factor activity
LOR96_RS16095	COG0697	spore germination
LOR96_RS16105	COG0584	glycerophosphoryl diester phosphodiesterase
LOR96_RS16115	COG0395	ABC-type sugar transport system, permease component
LOR96_RS16120	COG1175	transmembrane transport
LOR96_RS16125	COG1653	transport
LOR96_RS16160	COG0410	ABC transporter
LOR96_RS16170	COG4177	L-phenylalanine transmembrane transporter activity
LOR96_RS16190	COG1929	Belongs to the glycerate kinase type-1 family
LOR96_RS16195	COG2610	gluconate transmembrane transporter activity
LOR96_RS16200	COG3835	regulator
LOR96_RS16210	COG2177	Part of the ABC transporter FtsEX involved in
LOR96_RS16215	COG2884	Cell division ATP-binding protein ftsE
LOR96_RS16220	COG0552	protein localization to endoplasmic reticulum
LOR96_RS16220	COG0552	protein localization to endoplasmic reticulum
LOR96_RS16225	COG0742	ribosomal rna small subunit methyltransferase
LOR96_RS16230	COG3776	membrane
LOR96_RS16245	COG3714	YhhN family
LOR96_RS16260	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LOR96_RS16270	COG0247	lactate metabolic process
LOR96_RS16280	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LOR96_RS16290	COG2271	Major facilitator Superfamily
LOR96_RS16295	COG0584	glycerophosphoryl diester phosphodiesterase
LOR96_RS16300	COG0561	phosphatase activity
LOR96_RS16305	COG2267	carboxylic ester hydrolase activity
LOR96_RS16310	COG1280	lysine exporter protein (LysE YggA)
LOR96_RS16315	COG0514	ATP-dependent DNA helicase (RecQ)
LOR96_RS16320	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
LOR96_RS16325	COG2050	protein possibly involved in aromatic compounds catabolism
LOR96_RS16345	COG5564	TIM-barrel signal transduction protein
LOR96_RS16350	COG5441	Belongs to the UPF0261 family
LOR96_RS16360	COG0210	DNA helicase
LOR96_RS16365	COG1011	Hydrolase
LOR96_RS16370	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LOR96_RS16375	COG3159	Protein conserved in bacteria
LOR96_RS16380	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LOR96_RS16385	COG5567	small periplasmic lipoprotein
LOR96_RS16395	COG3072	Adenylate cyclase
LOR96_RS16400	COG0181	hydroxymethylbilane synthase activity
LOR96_RS16405	COG1587	Uroporphyrinogen-III synthase
LOR96_RS16410	COG2959	enzyme of heme biosynthesis
LOR96_RS16415	COG3071	HemY protein
LOR96_RS16465	COG2244	polysaccharide biosynthetic process
LOR96_RS16470	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LOR96_RS16475	COG0456	acetyltransferase
LOR96_RS16480	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LOR96_RS16485	COG1088	dTDP-glucose 4,6-dehydratase activity
LOR96_RS16490	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LOR96_RS16495	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LOR96_RS16500	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
LOR96_RS16505	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LOR96_RS16510	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LOR96_RS16515	COG3118	belongs to the thioredoxin family
LOR96_RS16525	COG0248	Ppx GppA phosphatase
LOR96_RS16535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LOR96_RS16550	COG3397	chitin binding
LOR96_RS16560	COG0129	dihydroxy-acid dehydratase activity
LOR96_RS16570	COG3978	acetolactate synthase activity
LOR96_RS16590	COG3085	chromosome segregation
LOR96_RS16595	COG0583	DNA-binding transcription factor activity
LOR96_RS16670	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LOR96_RS16680	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LOR96_RS16680	COG0678	peroxiredoxin activity
LOR96_RS16685	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LOR96_RS16720	COG1629	transport
LOR96_RS16725	COG0165	Argininosuccinate lyase
LOR96_RS16730	COG0137	argininosuccinate synthase activity
LOR96_RS16735	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LOR96_RS16780	COG0460	homoserine dehydrogenase
LOR96_RS16780	COG0527	aspartate kinase activity
LOR96_RS16785	COG0626	cystathionine gamma-synthase activity
LOR96_RS16790	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
LOR96_RS16800	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LOR96_RS16805	COG1609	Transcriptional regulator
LOR96_RS16810	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LOR96_RS16815	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LOR96_RS16820	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LOR96_RS16825	COG1575	Belongs to the MenA family. Type 1 subfamily
LOR96_RS16830	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LOR96_RS16835	COG3074	FtsZ-dependent cytokinesis
LOR96_RS16840	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LOR96_RS16845	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LOR96_RS16850	COG1494	fructose-1,6-bisphosphatase
LOR96_RS16855	COG2814	Major facilitator Superfamily
LOR96_RS16865	COG3152	Membrane
LOR96_RS16880	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LOR96_RS16890	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LOR96_RS16895	COG3678	ATP-independent chaperone mediated protein folding
LOR96_RS16900	COG0745	RESPONSE REGULATOR receiver
LOR96_RS16905	COG2205	protein histidine kinase activity
LOR96_RS16910	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LOR96_RS16915	COG1045	serine acetyltransferase
LOR96_RS16920	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LOR96_RS16925	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LOR96_RS16930	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LOR96_RS16935	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LOR96_RS16940	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LOR96_RS16945	COG4942	peptidase
LOR96_RS16950	COG2861	carbohydrate metabolic process
LOR96_RS16965	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LOR96_RS16970	COG0859	PFAM glycosyl transferase family 9
LOR96_RS16975	COG0859	PFAM glycosyl transferase family 9
LOR96_RS16980	COG1519	Transferase
LOR96_RS17000	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LOR96_RS17005	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LOR96_RS17010	COG2003	Belongs to the UPF0758 family
LOR96_RS17015	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LOR96_RS17020	COG0756	dUTP diphosphatase activity
LOR96_RS17025	COG1309	transcriptional regulator
LOR96_RS17030	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LOR96_RS17035	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LOR96_RS17040	COG1561	YicC-like family, N-terminal region
LOR96_RS17055	COG5001	Diguanylate cyclase
LOR96_RS17060	COG1024	Enoyl-CoA hydratase
LOR96_RS17065	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LOR96_RS17075	COG2860	membrane
LOR96_RS17080	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LOR96_RS17090	COG1758	RNA polymerase activity
LOR96_RS17095	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LOR96_RS17100	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LOR96_RS17105	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LOR96_RS17110	COG0786	glutamate:sodium symporter activity
LOR96_RS17115	COG2233	PERMEase
LOR96_RS17120	COG2982	Protein involved in outer membrane biogenesis
LOR96_RS17125	COG0456	acetyltransferase
LOR96_RS17140	COG1011	Hydrolase
LOR96_RS17155	COG3852	Histidine kinase
LOR96_RS17165	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LOR96_RS17175	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LOR96_RS17180	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LOR96_RS17180	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LOR96_RS17185	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LOR96_RS17190	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LOR96_RS17195	COG3084	Protein conserved in bacteria
LOR96_RS17205	COG1763	Mo-molybdopterin cofactor biosynthetic process
LOR96_RS17230	COG2186	Transcriptional regulator
LOR96_RS17235	COG1609	Transcriptional regulator
LOR96_RS17240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LOR96_RS17250	COG1172	Belongs to the binding-protein-dependent transport system permease family
LOR96_RS17255	COG1129	ABC transporter
LOR96_RS17260	COG1869	D-ribose catabolic process
LOR96_RS17265	COG3158	transport of potassium into the cell
LOR96_RS17270	COG0714	Associated with various cellular activities
LOR96_RS17275	COG2425	protein containing a von Willebrand factor type A (vWA) domain
LOR96_RS17285	COG2502	aspartate--ammonia ligase
LOR96_RS17290	COG1522	sequence-specific DNA binding
LOR96_RS17295	COG0716	FMN binding
LOR96_RS17300	COG0445	tRNA wobble uridine modification
LOR96_RS17305	COG0357	Ribosomal RNA small subunit methyltransferase G
LOR96_RS17310	COG3312	ion transport
LOR96_RS17315	COG0356	it plays a direct role in the translocation of protons across the membrane
LOR96_RS17325	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LOR96_RS17335	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LOR96_RS17340	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LOR96_RS17350	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LOR96_RS17365	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LOR96_RS17370	COG0573	inorganic phosphate transmembrane transporter activity
LOR96_RS17375	COG0581	inorganic phosphate transmembrane transporter activity
LOR96_RS17385	COG0704	Plays a role in the regulation of phosphate uptake
LOR96_RS17390	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LOR96_RS17395	COG0765	amino acid transport
LOR96_RS17400	COG0765	amino acid transport
LOR96_RS17405	COG2252	PERMEase
LOR96_RS17410	COG0840	transmembrane signaling receptor activity
LOR96_RS17420	COG3121	Chaperone
LOR96_RS17435	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LOR96_RS17440	COG0706	membrane insertase activity
LOR96_RS17450	COG0594	ribonuclease P activity
LOR96_RS17455	COG0230	Belongs to the bacterial ribosomal protein bL34 family
LOR96_RS17515	COG1454	alcohol dehydrogenase
LOR96_RS17620	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LOR96_RS17635	COG0741	lytic transglycosylase activity
LOR96_RS17650	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LOR96_RS17690	COG1192	Involved in chromosome partitioning
LOR96_RS17760	COG2944	sequence-specific DNA binding
LOR96_RS17925	COG3423	Transcriptional regulator
LOR96_RS17990	COG4382	Mu-like prophage protein Gp16
LOR96_RS18045	COG4383	Mu-like prophage protein gp29
LOR96_RS18070	COG4397	Mu-like prophage major head subunit gpT
LOR96_RS18095	COG4386	tail sheath protein