locus-tag class description ND012_RS00005 PF00308 Bacterial dnaA protein ND012_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix ND012_RS00005 PF11638 DnaA N-terminal domain ND012_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ND012_RS00010 PF02767 DNA polymerase III beta subunit, central domain ND012_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ND012_RS00015 PF02463 RecF/RecN/SMC N terminal domain ND012_RS00020 PF01751 Toprim domain ND012_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus ND012_RS00020 PF00204 DNA gyrase B ND012_RS00020 PF18053 DNA gyrase B subunit insert domain ND012_RS00030 PF12566 Protein of unknown function (DUF3748) ND012_RS00030 PF07676 WD40-like Beta Propeller Repeat ND012_RS00035 PF07119 Protein of unknown function (DUF1375) ND012_RS00040 PF00011 Hsp20/alpha crystallin family ND012_RS00045 PF00011 Hsp20/alpha crystallin family ND012_RS00050 PF02080 TrkA-C domain ND012_RS00050 PF06826 Predicted Permease Membrane Region ND012_RS00055 PF00155 Aminotransferase class I and II ND012_RS00060 PF13488 Glycine zipper ND012_RS00060 PF00691 OmpA family ND012_RS00080 PF03352 Methyladenine glycosylase ND012_RS00090 PF02091 Glycyl-tRNA synthetase alpha subunit ND012_RS00095 PF05746 DALR anticodon binding domain ND012_RS00095 PF02092 Glycyl-tRNA synthetase beta subunit ND012_RS00100 PF11254 Protein of unknown function (DUF3053) ND012_RS00135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_RS00135 PF02378 Phosphotransferase system, EIIC ND012_RS00135 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND012_RS00140 PF01232 Mannitol dehydrogenase Rossmann domain ND012_RS00140 PF08125 Mannitol dehydrogenase C-terminal domain ND012_RS00145 PF05068 Mannitol repressor ND012_RS00150 PF10928 Protein of unknown function (DUF2810) ND012_RS00155 PF03473 MOSC domain ND012_RS00155 PF03475 3-alpha domain ND012_RS00160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_RS00160 PF02203 Tar ligand binding domain homologue ND012_RS00160 PF00672 HAMP domain ND012_RS00165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND012_RS00165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND012_RS00170 PF02634 FdhD/NarQ family ND012_RS00180 PF13247 4Fe-4S dicluster domain ND012_RS00180 PF09163 Formate dehydrogenase N, transmembrane ND012_RS00185 PF01292 Prokaryotic cytochrome b561 ND012_RS00190 PF04216 Protein involved in formate dehydrogenase formation ND012_RS00195 PF03841 L-seryl-tRNA selenium transferase ND012_RS00195 PF12390 Selenocysteine synthase N terminal ND012_RS00200 PF09107 Elongation factor SelB, winged helix ND012_RS00200 PF09106 Elongation factor SelB, winged helix ND012_RS00200 PF03144 Elongation factor Tu domain 2 ND012_RS00200 PF00009 Elongation factor Tu GTP binding domain ND012_RS00205 PF01427 D-ala-D-ala dipeptidase ND012_RS00210 PF07690 Major Facilitator Superfamily ND012_RS00215 PF01757 Acyltransferase family ND012_RS00225 PF00589 Phage integrase family ND012_RS00225 PF13356 Arm DNA-binding domain ND012_RS00225 PF14659 Phage integrase, N-terminal SAM-like domain ND012_RS00255 PF01175 Urocanase Rossmann-like domain ND012_RS00255 PF17392 Urocanase C-terminal domain ND012_RS00255 PF17391 Urocanase N-terminal domain ND012_RS00260 PF00221 Aromatic amino acid lyase ND012_RS00265 PF00324 Amino acid permease ND012_RS00275 PF12146 Serine aminopeptidase, S33 ND012_RS00280 PF08019 Phosphoethanolamine transferase EptA/EptB ND012_RS00280 PF00884 Sulfatase ND012_RS00285 PF00196 Bacterial regulatory proteins, luxR family ND012_RS00285 PF00072 Response regulator receiver domain ND012_RS00290 PF07730 Histidine kinase ND012_RS00290 PF05231 MASE1 ND012_RS00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS00295 PF07690 Major Facilitator Superfamily ND012_RS00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_RS00310 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS00315 PF12911 N-terminal TM domain of oligopeptide transport permease C ND012_RS00315 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_RS00320 PF00005 ABC transporter ND012_RS00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_RS00325 PF00005 ABC transporter ND012_RS00330 PF11658 Cellulose biosynthesis protein BcsG ND012_RS00335 PF11120 Cellulose biosynthesis protein BcsF ND012_RS00340 PF10995 Cellulose biosynthesis GIL ND012_RS00350 PF06564 Cellulose biosynthesis protein BcsQ ND012_RS00355 PF03552 Cellulose synthase ND012_RS00355 PF00535 Glycosyl transferase family 2 ND012_RS00355 PF07238 PilZ domain ND012_RS00360 PF03170 Bacterial cellulose synthase subunit ND012_RS00365 PF01270 Glycosyl hydrolases family 8 ND012_RS00370 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ND012_RS00375 PF00672 HAMP domain ND012_RS00375 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS00375 PF17154 Gammaproteobacterial periplasmic sensor domain ND012_RS00375 PF00563 EAL domain ND012_RS00380 PF00375 Sodium:dicarboxylate symporter family ND012_RS00385 PF00675 Insulinase (Peptidase family M16) ND012_RS00385 PF05193 Peptidase M16 inactive domain ND012_RS00390 PF00294 pfkB family carbohydrate kinase ND012_RS00395 PF01361 Tautomerase enzyme ND012_RS00400 PF00563 EAL domain ND012_RS00405 PF02611 CDP-diacylglycerol pyrophosphatase ND012_RS00410 PF03631 Virulence factor BrkB ND012_RS00415 PF03466 LysR substrate binding domain ND012_RS00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS00420 PF00375 Sodium:dicarboxylate symporter family ND012_RS00425 PF01053 Cys/Met metabolism PLP-dependent enzyme ND012_RS00430 PF02369 Bacterial Ig-like domain (group 1) ND012_RS00430 PF11924 Inverse autotransporter, beta-domain ND012_RS00430 PF07979 Intimin C-type lectin domain ND012_RS00430 PF09134 Invasin, domain 3 ND012_RS00435 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS00435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND012_RS00440 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ND012_RS00445 PF01432 Peptidase family M3 ND012_RS00450 PF04445 Putative SAM-dependent methyltransferase ND012_RS00455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ND012_RS00455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ND012_RS00460 PF00582 Universal stress protein family ND012_RS00465 PF10625 Universal stress protein B (UspB) ND012_RS00470 PF01384 Phosphate transporter family ND012_RS00480 PF08722 TnsA endonuclease N terminal ND012_RS00480 PF08721 TnsA endonuclease C terminal ND012_RS00525 PF02796 Helix-turn-helix domain of resolvase ND012_RS00525 PF00239 Resolvase, N terminal domain ND012_RS00530 PF02796 Helix-turn-helix domain of resolvase ND012_RS00530 PF00239 Resolvase, N terminal domain ND012_RS00550 PF01810 LysE type translocator ND012_RS00555 PF00583 Acetyltransferase (GNAT) family ND012_RS00560 PF17954 Quercetinase C-terminal cupin domain ND012_RS00560 PF02678 Pirin ND012_RS00565 PF00356 Bacterial regulatory proteins, lacI family ND012_RS00565 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND012_RS00570 PF02447 GntP family permease ND012_RS00575 PF01202 Shikimate kinase ND012_RS00580 PF01914 MarC family integral membrane protein ND012_RS00585 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND012_RS00585 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND012_RS00590 PF06580 Histidine kinase ND012_RS00590 PF07694 5TMR of 5TMR-LYT ND012_RS00595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND012_RS00595 PF02806 Alpha amylase, C-terminal all-beta domain ND012_RS00595 PF00128 Alpha amylase, catalytic domain ND012_RS00600 PF18390 Glycogen debranching enzyme C-terminal domain ND012_RS00600 PF00128 Alpha amylase, catalytic domain ND012_RS00600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ND012_RS00605 PF00483 Nucleotidyl transferase ND012_RS00610 PF00534 Glycosyl transferases group 1 ND012_RS00610 PF08323 Starch synthase catalytic domain ND012_RS00615 PF00343 Carbohydrate phosphorylase ND012_RS00620 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ND012_RS00620 PF01266 FAD dependent oxidoreductase ND012_RS00625 PF08220 DeoR-like helix-turn-helix domain ND012_RS00625 PF00455 DeoR C terminal sensor domain ND012_RS00630 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease ND012_RS00630 PF01694 Rhomboid family ND012_RS00635 PF00581 Rhodanese-like domain ND012_RS00640 PF00196 Bacterial regulatory proteins, luxR family ND012_RS00640 PF17874 MalT-like TPR region ND012_RS00645 PF00343 Carbohydrate phosphorylase ND012_RS00650 PF02446 4-alpha-glucanotransferase ND012_RS00655 PF01521 Iron-sulphur cluster biosynthesis ND012_RS00655 PF01106 NifU-like domain ND012_RS00660 PF00156 Phosphoribosyl transferase domain ND012_RS00665 PF00561 alpha/beta hydrolase fold ND012_RS00675 PF09012 FeoC like transcriptional regulator ND012_RS00680 PF07664 Ferrous iron transport protein B C terminus ND012_RS00680 PF17910 FeoB cytosolic helical domain ND012_RS00680 PF02421 Ferrous iron transport protein B ND012_RS00680 PF07670 Nucleoside recognition ND012_RS00685 PF04023 FeoA domain ND012_RS00690 PF17674 HHH domain ND012_RS00690 PF00575 S1 RNA binding domain ND012_RS00690 PF09371 Tex-like protein N-terminal domain ND012_RS00690 PF16921 Tex protein YqgF-like domain ND012_RS00720 PF03449 Transcription elongation factor, N-terminal ND012_RS00720 PF01272 Transcription elongation factor, GreA/GreB, C-term ND012_RS00725 PF00486 Transcriptional regulatory protein, C terminal ND012_RS00725 PF00072 Response regulator receiver domain ND012_RS00730 PF00672 HAMP domain ND012_RS00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS00730 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS00735 PF01293 Phosphoenolpyruvate carboxykinase ND012_RS00740 PF01430 Hsp33 protein ND012_RS00745 PF01479 S4 domain ND012_RS00750 PF13419 Haloacid dehalogenase-like hydrolase ND012_RS00755 PF07095 Intracellular growth attenuator protein IgaA ND012_RS00760 PF00293 NUDIX domain ND012_RS00765 PF17092 Penicillin-binding protein OB-like domain ND012_RS00765 PF00912 Transglycosylase ND012_RS00765 PF00905 Penicillin binding protein transpeptidase domain ND012_RS00790 PF03958 Bacterial type II/III secretion system short domain ND012_RS00790 PF00263 Bacterial type II and III secretion system protein ND012_RS00795 PF01202 Shikimate kinase ND012_RS00800 PF01761 3-dehydroquinate synthase ND012_RS00805 PF05036 Sporulation related domain ND012_RS00810 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND012_RS00815 PF00834 Ribulose-phosphate 3 epimerase family ND012_RS00820 PF13419 Haloacid dehalogenase-like hydrolase ND012_RS00825 PF00579 tRNA synthetases class I (W and Y) ND012_RS00830 PF14824 Sirohaem biosynthesis protein central ND012_RS00830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND012_RS00830 PF10414 Sirohaem synthase dimerisation region ND012_RS00835 PF01226 Formate/nitrite transporter ND012_RS00840 PF13806 Rieske-like [2Fe-2S] domain ND012_RS00845 PF18267 Rubredoxin NAD+ reductase C-terminal domain ND012_RS00845 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS00845 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND012_RS00845 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND012_RS00845 PF04324 BFD-like [2Fe-2S] binding domain ND012_RS00850 PF07969 Amidohydrolase family ND012_RS00855 PF07690 Major Facilitator Superfamily ND012_RS00870 PF00356 Bacterial regulatory proteins, lacI family ND012_RS00875 PF02056 Family 4 glycosyl hydrolase ND012_RS00875 PF11975 Family 4 glycosyl hydrolase C-terminal domain ND012_RS00880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND012_RS00885 PF00117 Glutamine amidotransferase class-I ND012_RS00890 PF00202 Aminotransferase class-III ND012_RS00895 PF12805 FUSC-like inner membrane protein yccS ND012_RS00900 PF13545 Crp-like helix-turn-helix domain ND012_RS00900 PF00027 Cyclic nucleotide-binding domain ND012_RS00905 PF02566 OsmC-like protein ND012_RS00925 PF00156 Phosphoribosyl transferase domain ND012_RS00930 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS00935 PF00485 Phosphoribulokinase / Uridine kinase family ND012_RS00940 PF06794 Uncharacterised protein family (UPF0270) ND012_RS00945 PF00561 alpha/beta hydrolase fold ND012_RS00950 PF01810 LysE type translocator ND012_RS00955 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND012_RS00960 PF00535 Glycosyl transferase family 2 ND012_RS00965 PF00005 ABC transporter ND012_RS00965 PF12848 ABC transporter ND012_RS00970 PF02525 Flavodoxin-like fold ND012_RS00975 PF02254 TrkA-N domain ND012_RS00975 PF00999 Sodium/hydrogen exchanger family ND012_RS00980 PF09526 Probable metal-binding protein (DUF2387) ND012_RS00985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_RS00990 PF04102 SlyX ND012_RS00995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND012_RS00995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_RS01000 PF13309 HTH domain ND012_RS01000 PF08348 YheO-like PAS domain ND012_RS01005 PF02635 DsrE/DsrF-like family ND012_RS01010 PF02635 DsrE/DsrF-like family ND012_RS01015 PF04077 DsrH like protein ND012_RS01020 PF00164 Ribosomal protein S12/S23 ND012_RS01025 PF00177 Ribosomal protein S7p/S5e ND012_RS01030 PF00009 Elongation factor Tu GTP binding domain ND012_RS01030 PF03144 Elongation factor Tu domain 2 ND012_RS01030 PF03764 Elongation factor G, domain IV ND012_RS01030 PF14492 Elongation Factor G, domain II ND012_RS01030 PF00679 Elongation factor G C-terminus ND012_RS01035 PF03143 Elongation factor Tu C-terminal domain ND012_RS01035 PF03144 Elongation factor Tu domain 2 ND012_RS01035 PF00009 Elongation factor Tu GTP binding domain ND012_RS01040 PF04324 BFD-like [2Fe-2S] binding domain ND012_RS01045 PF00210 Ferritin-like domain ND012_RS01050 PF00338 Ribosomal protein S10p/S20e ND012_RS01055 PF00297 Ribosomal protein L3 ND012_RS01060 PF00573 Ribosomal protein L4/L1 family ND012_RS01065 PF00276 Ribosomal protein L23 ND012_RS01070 PF00181 Ribosomal Proteins L2, RNA binding domain ND012_RS01070 PF03947 Ribosomal Proteins L2, C-terminal domain ND012_RS01075 PF00203 Ribosomal protein S19 ND012_RS01080 PF00237 Ribosomal protein L22p/L17e ND012_RS01085 PF07650 KH domain ND012_RS01085 PF00189 Ribosomal protein S3, C-terminal domain ND012_RS01090 PF00252 Ribosomal protein L16p/L10e ND012_RS01095 PF00831 Ribosomal L29 protein ND012_RS01100 PF00366 Ribosomal protein S17 ND012_RS01105 PF00238 Ribosomal protein L14p/L23e ND012_RS01110 PF00467 KOW motif ND012_RS01110 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ND012_RS01115 PF00281 Ribosomal protein L5 ND012_RS01115 PF00673 ribosomal L5P family C-terminus ND012_RS01120 PF00253 Ribosomal protein S14p/S29e ND012_RS01125 PF00410 Ribosomal protein S8 ND012_RS01130 PF00347 Ribosomal protein L6 ND012_RS01135 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ND012_RS01140 PF00333 Ribosomal protein S5, N-terminal domain ND012_RS01140 PF03719 Ribosomal protein S5, C-terminal domain ND012_RS01145 PF00327 Ribosomal protein L30p/L7e ND012_RS01150 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ND012_RS01155 PF00344 SecY translocase ND012_RS01160 PF00444 Ribosomal protein L36 ND012_RS01165 PF00416 Ribosomal protein S13/S18 ND012_RS01170 PF00411 Ribosomal protein S11 ND012_RS01175 PF00163 Ribosomal protein S4/S9 N-terminal domain ND012_RS01175 PF01479 S4 domain ND012_RS01180 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ND012_RS01180 PF01000 RNA polymerase Rpb3/RpoA insert domain ND012_RS01180 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ND012_RS01185 PF01196 Ribosomal protein L17 ND012_RS01190 PF13411 MerR HTH family regulatory protein ND012_RS01195 PF03889 Alternative ribosome-rescue factor A ND012_RS01200 PF01741 Large-conductance mechanosensitive channel, MscL ND012_RS01205 PF02080 TrkA-C domain ND012_RS01205 PF02254 TrkA-N domain ND012_RS01210 PF01189 16S rRNA methyltransferase RsmB/F ND012_RS01210 PF01029 NusB family ND012_RS01215 PF02911 Formyl transferase, C-terminal domain ND012_RS01215 PF00551 Formyl transferase ND012_RS01220 PF01327 Polypeptide deformylase ND012_RS01225 PF17782 DprA winged helix domain ND012_RS01225 PF02481 DNA recombination-mediator protein A ND012_RS01230 PF04361 Protein of unknown function (DUF494) ND012_RS01235 PF01396 Topoisomerase DNA binding C4 zinc finger ND012_RS01240 PF01300 Telomere recombination ND012_RS01245 PF08501 Shikimate dehydrogenase substrate binding domain ND012_RS01245 PF01488 Shikimate / quinate 5-dehydrogenase ND012_RS01245 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ND012_RS01250 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_RS01275 PF00474 Sodium:solute symporter family ND012_RS01280 PF04341 Protein of unknown function, DUF485 ND012_RS01285 PF13193 AMP-binding enzyme C-terminal domain ND012_RS01285 PF00501 AMP-binding enzyme ND012_RS01285 PF16177 Acetyl-coenzyme A synthetase N-terminus ND012_RS01290 PF00375 Sodium:dicarboxylate symporter family ND012_RS01295 PF04143 Sulphur transport ND012_RS01300 PF01206 Sulfurtransferase TusA ND012_RS01305 PF02719 Polysaccharide biosynthesis protein ND012_RS01310 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND012_RS01315 PF02350 UDP-N-acetylglucosamine 2-epimerase ND012_RS01320 PF03102 NeuB family ND012_RS01320 PF08666 SAF domain ND012_RS01330 PF00483 Nucleotidyl transferase ND012_RS01340 PF02348 Cytidylyltransferase ND012_RS01340 PF13472 GDSL-like Lipase/Acylhydrolase family ND012_RS01365 PF00795 Carbon-nitrogen hydrolase ND012_RS01365 PF02540 NAD synthase ND012_RS01370 PF00117 Glutamine amidotransferase class-I ND012_RS01375 PF00977 Histidine biosynthesis protein ND012_RS01380 PF08485 Polysaccharide biosynthesis protein C-terminal ND012_RS01380 PF02719 Polysaccharide biosynthesis protein ND012_RS01385 PF01370 NAD dependent epimerase/dehydratase family ND012_RS01390 PF02350 UDP-N-acetylglucosamine 2-epimerase ND012_RS01415 PF11412 Disulphide bond corrector protein DsbC ND012_RS01415 PF02683 Cytochrome C biogenesis protein transmembrane region ND012_RS01420 PF03091 CutA1 divalent ion tolerance protein ND012_RS01425 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND012_RS01430 PF00206 Lyase ND012_RS01430 PF10415 Fumarase C C-terminus ND012_RS01435 PF04186 FxsA cytoplasmic membrane protein ND012_RS01440 PF00166 Chaperonin 10 Kd subunit ND012_RS01445 PF00118 TCP-1/cpn60 chaperonin family ND012_RS01450 PF13698 Domain of unknown function (DUF4156) ND012_RS01455 PF04055 Radical SAM superfamily ND012_RS01460 PF09285 Elongation factor P, C-terminal ND012_RS01460 PF08207 Elongation factor P (EF-P) KOW-like domain ND012_RS01460 PF01132 Elongation factor P (EF-P) OB domain ND012_RS01465 PF18416 N-acetylglucosamine binding protein domain 2 ND012_RS01465 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND012_RS01470 PF00196 Bacterial regulatory proteins, luxR family ND012_RS01480 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_RS01480 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_RS01485 PF13954 PapC N-terminal domain ND012_RS01485 PF00577 Outer membrane usher protein ND012_RS01485 PF13953 PapC C-terminal domain ND012_RS01490 PF00419 Fimbrial protein ND012_RS01495 PF00893 Small Multidrug Resistance protein ND012_RS01500 PF08212 Lipocalin-like domain ND012_RS01505 PF02313 Fumarate reductase subunit D ND012_RS01510 PF02300 Fumarate reductase subunit C ND012_RS01515 PF13085 2Fe-2S iron-sulfur cluster binding domain ND012_RS01515 PF13183 4Fe-4S dicluster domain ND012_RS01520 PF00890 FAD binding domain ND012_RS01520 PF02910 Fumarate reductase flavoprotein C-term ND012_RS01525 PF00152 tRNA synthetases class II (D, K and N) ND012_RS01530 PF00924 Mechanosensitive ion channel ND012_RS01530 PF12795 Mechanosensitive ion channel porin domain ND012_RS01530 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND012_RS01535 PF02666 Phosphatidylserine decarboxylase ND012_RS01540 PF03193 RsgA GTPase ND012_RS01545 PF00929 Exonuclease ND012_RS01565 PF08331 Domain of unknown function (DUF1730) ND012_RS01570 PF01256 Carbohydrate kinase ND012_RS01570 PF03853 YjeF-related protein N-terminus ND012_RS01575 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ND012_RS01580 PF01520 N-acetylmuramoyl-L-alanine amidase ND012_RS01585 PF08676 MutL C terminal dimerisation domain ND012_RS01585 PF01119 DNA mismatch repair protein, C-terminal domain ND012_RS01595 PF17209 Hfq protein ND012_RS01600 PF01926 50S ribosome-binding GTPase ND012_RS01600 PF13167 GTP-binding GTPase N-terminal ND012_RS01600 PF16360 GTP-binding GTPase Middle Region ND012_RS01605 PF12221 Bacterial membrane protein N terminal ND012_RS01605 PF01145 SPFH domain / Band 7 family ND012_RS01610 PF01145 SPFH domain / Band 7 family ND012_RS01615 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) ND012_RS01620 PF00709 Adenylosuccinate synthetase ND012_RS01625 PF02082 Transcriptional regulator ND012_RS01630 PF17876 Cold shock domain ND012_RS01630 PF08206 Ribonuclease B OB domain ND012_RS01630 PF00575 S1 RNA binding domain ND012_RS01630 PF08461 Ribonuclease R winged-helix domain ND012_RS01630 PF00773 RNB domain ND012_RS01635 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND012_RS01635 PF00588 SpoU rRNA Methylase family ND012_RS01655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_RS01660 PF00577 Outer membrane usher protein ND012_RS01660 PF13954 PapC N-terminal domain ND012_RS01660 PF13953 PapC C-terminal domain ND012_RS01680 PF00326 Prolyl oligopeptidase family ND012_RS01690 PF01250 Ribosomal protein S6 ND012_RS01695 PF00436 Single-strand binding protein family ND012_RS01700 PF01084 Ribosomal protein S18 ND012_RS01705 PF01281 Ribosomal protein L9, N-terminal domain ND012_RS01705 PF03948 Ribosomal protein L9, C-terminal domain ND012_RS01710 PF08525 Opacity-associated protein A N-terminal motif ND012_RS01710 PF04225 Opacity-associated protein A LysM-like domain ND012_RS01715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_RS01715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ND012_RS01720 PF01814 Hemerythrin HHE cation binding domain ND012_RS01720 PF04405 Domain of Unknown function (DUF542) ND012_RS01725 PF00149 Calcineurin-like phosphoesterase ND012_RS01725 PF02872 5'-nucleotidase, C-terminal domain ND012_RS01730 PF00459 Inositol monophosphatase family ND012_RS01735 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ND012_RS01740 PF06526 Protein of unknown function (DUF1107) ND012_RS01745 PF03471 Transporter associated domain ND012_RS01745 PF01595 Cyclin M transmembrane N-terminal domain ND012_RS01745 PF00571 CBS domain ND012_RS01750 PF01625 Peptide methionine sulfoxide reductase ND012_RS01755 PF17243 POTRA domain TamA domain 1 ND012_RS01755 PF07244 Surface antigen variable number repeat ND012_RS01755 PF01103 Surface antigen ND012_RS01760 PF04357 TamB, inner membrane protein subunit of TAM complex ND012_RS01765 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like ND012_RS01770 PF00719 Inorganic pyrophosphatase ND012_RS01775 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ND012_RS01780 PF02875 Mur ligase family, glutamate ligase domain ND012_RS01780 PF01225 Mur ligase family, catalytic domain ND012_RS01780 PF08245 Mur ligase middle domain ND012_RS01785 PF01316 Arginine repressor, DNA binding domain ND012_RS01785 PF02863 Arginine repressor, C-terminal domain ND012_RS01790 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ND012_RS01790 PF00056 lactate/malate dehydrogenase, NAD binding domain ND012_RS01795 PF13693 Winged helix-turn-helix DNA-binding ND012_RS01810 PF00348 Polyprenyl synthetase ND012_RS01815 PF00829 Ribosomal prokaryotic L21 protein ND012_RS01820 PF01016 Ribosomal L27 protein ND012_RS01825 PF00892 EamA-like transporter family ND012_RS01830 PF01018 GTP1/OBG ND012_RS01830 PF01926 50S ribosome-binding GTPase ND012_RS01835 PF00672 HAMP domain ND012_RS01835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS01835 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS01840 PF00072 Response regulator receiver domain ND012_RS01840 PF00486 Transcriptional regulatory protein, C terminal ND012_RS01845 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ND012_RS01850 PF03449 Transcription elongation factor, N-terminal ND012_RS01850 PF01272 Transcription elongation factor, GreA/GreB, C-term ND012_RS01855 PF01985 CRS1 / YhbY (CRM) domain ND012_RS01860 PF01728 FtsJ-like methyltransferase ND012_RS01865 PF00004 ATPase family associated with various cellular activities (AAA) ND012_RS01865 PF17862 AAA+ lid domain ND012_RS01865 PF06480 FtsH Extracellular ND012_RS01865 PF01434 Peptidase family M41 ND012_RS01870 PF00809 Pterin binding enzyme ND012_RS01875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND012_RS01875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND012_RS01875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND012_RS01875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND012_RS01880 PF03840 Preprotein translocase SecG subunit ND012_RS01895 PF02576 RimP N-terminal domain ND012_RS01895 PF17384 RimP C-terminal SH3 domain ND012_RS01900 PF00575 S1 RNA binding domain ND012_RS01900 PF08529 NusA N-terminal domain ND012_RS01900 PF13184 NusA-like KH domain ND012_RS01905 PF11987 Translation-initiation factor 2 ND012_RS01905 PF04760 Translation initiation factor IF-2, N-terminal region ND012_RS01905 PF08364 Bacterial translation initiation factor IF-2 associated region ND012_RS01905 PF03144 Elongation factor Tu domain 2 ND012_RS01905 PF00009 Elongation factor Tu GTP binding domain ND012_RS01910 PF02033 Ribosome-binding factor A ND012_RS01915 PF01509 TruB family pseudouridylate synthase (N terminal domain) ND012_RS01915 PF16198 tRNA pseudouridylate synthase B C-terminal domain ND012_RS01915 PF09157 Pseudouridine synthase II TruB, C-terminal ND012_RS01920 PF00312 Ribosomal protein S15 ND012_RS01925 PF00575 S1 RNA binding domain ND012_RS01925 PF00013 KH domain ND012_RS01925 PF03725 3' exoribonuclease family, domain 2 ND012_RS01925 PF01138 3' exoribonuclease family, domain 1 ND012_RS01925 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ND012_RS01930 PF07719 Tetratricopeptide repeat ND012_RS01930 PF13181 Tetratricopeptide repeat ND012_RS01935 PF00271 Helicase conserved C-terminal domain ND012_RS01935 PF12343 Cold shock protein DEAD box A ND012_RS01935 PF00270 DEAD/DEAH box helicase ND012_RS01935 PF03880 DbpA RNA binding domain ND012_RS01940 PF00296 Luciferase-like monooxygenase ND012_RS01950 PF03313 Serine dehydratase alpha chain ND012_RS01955 PF01136 Peptidase family U32 ND012_RS01960 PF01136 Peptidase family U32 ND012_RS01965 PF02036 SCP-2 sterol transfer family ND012_RS01970 PF13508 Acetyltransferase (GNAT) domain ND012_RS01975 PF01541 GIY-YIG catalytic domain ND012_RS01980 PF13520 Amino acid permease ND012_RS01985 PF01276 Orn/Lys/Arg decarboxylase, major domain ND012_RS01985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND012_RS01985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND012_RS01990 PF10940 Protein of unknown function (DUF2618) ND012_RS02000 PF13460 NAD(P)H-binding ND012_RS02005 PF12706 Beta-lactamase superfamily domain ND012_RS02015 PF07969 Amidohydrolase family ND012_RS02020 PF00005 ABC transporter ND012_RS02025 PF00005 ABC transporter ND012_RS02030 PF06007 Phosphonate metabolism protein PhnJ ND012_RS02035 PF05861 Bacterial phosphonate metabolism protein (PhnI) ND012_RS02040 PF05845 Bacterial phosphonate metabolism protein (PhnH) ND012_RS02045 PF06754 Phosphonate metabolism protein PhnG ND012_RS02055 PF03477 ATP cone domain ND012_RS02055 PF13597 Anaerobic ribonucleoside-triphosphate reductase ND012_RS02060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND012_RS02060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND012_RS02065 PF06877 Regulator of ribonuclease activity B ND012_RS02070 PF00583 Acetyltransferase (GNAT) family ND012_RS02075 PF08264 Anticodon-binding domain of tRNA ND012_RS02075 PF00133 tRNA synthetases class I (I, L, M and V) ND012_RS02075 PF10458 Valyl tRNA synthetase tRNA binding arm ND012_RS02080 PF04364 DNA polymerase III chi subunit, HolC ND012_RS02085 PF00883 Cytosol aminopeptidase family, catalytic domain ND012_RS02085 PF02789 Cytosol aminopeptidase family, N-terminal domain ND012_RS02090 PF03739 Lipopolysaccharide export system permease LptF/LptG ND012_RS02095 PF03739 Lipopolysaccharide export system permease LptF/LptG ND012_RS02110 PF04851 Type III restriction enzyme, res subunit ND012_RS02110 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ND012_RS02110 PF00271 Helicase conserved C-terminal domain ND012_RS02110 PF08463 EcoEI R protein C-terminal ND012_RS02115 PF02384 N-6 DNA Methylase ND012_RS02120 PF01420 Type I restriction modification DNA specificity domain ND012_RS02145 PF04221 RelB antitoxin ND012_RS02150 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ND012_RS02225 PF01344 Kelch motif ND012_RS02230 PF06178 Oligogalacturonate-specific porin protein (KdgM) ND012_RS02235 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND012_RS02235 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND012_RS02235 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain ND012_RS02250 PF02278 Polysaccharide lyase family 8, super-sandwich domain ND012_RS02250 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain ND012_RS02250 PF09092 Lyase, N terminal ND012_RS02250 PF09093 Lyase, catalytic ND012_RS02255 PF00884 Sulfatase ND012_RS02260 PF00455 DeoR C terminal sensor domain ND012_RS02260 PF08220 DeoR-like helix-turn-helix domain ND012_RS02265 PF08013 Tagatose 6 phosphate kinase ND012_RS02270 PF01380 SIS domain ND012_RS02275 PF03830 PTS system sorbose subfamily IIB component ND012_RS02280 PF03609 PTS system sorbose-specific iic component ND012_RS02285 PF03613 PTS system mannose/fructose/sorbose family IID component ND012_RS02295 PF01979 Amidohydrolase family ND012_RS02300 PF04962 KduI/IolB family ND012_RS02310 PF07470 Glycosyl Hydrolase Family 88 ND012_RS02315 PF04055 Radical SAM superfamily ND012_RS02315 PF13186 Iron-sulfur cluster-binding domain ND012_RS02320 PF00884 Sulfatase ND012_RS02330 PF01116 Fructose-bisphosphate aldolase class-II ND012_RS02340 PF10696 Protein of unknown function (DUF2501) ND012_RS02345 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND012_RS02360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_RS02365 PF00873 AcrB/AcrD/AcrF family ND012_RS02370 PF00465 Iron-containing alcohol dehydrogenase ND012_RS02375 PF02733 Dak1 domain ND012_RS02380 PF02734 DAK2 domain ND012_RS02385 PF00391 PEP-utilising enzyme, mobile domain ND012_RS02385 PF03610 PTS system fructose IIA component ND012_RS02385 PF05524 PEP-utilising enzyme, N-terminal ND012_RS02385 PF00381 PTS HPr component phosphorylation site ND012_RS02390 PF02954 Bacterial regulatory protein, Fis family ND012_RS02390 PF00158 Sigma-54 interaction domain ND012_RS02390 PF00989 PAS fold ND012_RS02395 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS02400 PF07256 Protein of unknown function (DUF1435) ND012_RS02420 PF05175 Methyltransferase small domain ND012_RS02420 PF08468 Methyltransferase small domain N-terminal ND012_RS02425 PF03603 DNA polymerase III psi subunit ND012_RS02430 PF00583 Acetyltransferase (GNAT) family ND012_RS02435 PF00009 Elongation factor Tu GTP binding domain ND012_RS02435 PF03144 Elongation factor Tu domain 2 ND012_RS02435 PF16658 Class II release factor RF3, C-terminal domain ND012_RS02440 PF04972 BON domain ND012_RS02445 PF07043 Protein of unknown function (DUF1328) ND012_RS02450 PF01734 Patatin-like phospholipase ND012_RS02455 PF01026 TatD related DNase ND012_RS02460 PF07670 Nucleoside recognition ND012_RS02460 PF01773 Na+ dependent nucleoside transporter N-terminus ND012_RS02460 PF07662 Na+ dependent nucleoside transporter C-terminus ND012_RS02465 PF01791 DeoC/LacD family aldolase ND012_RS02470 PF02885 Glycosyl transferase family, helical bundle domain ND012_RS02470 PF00591 Glycosyl transferase family, a/b domain ND012_RS02470 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ND012_RS02475 PF01676 Metalloenzyme superfamily ND012_RS02480 PF01048 Phosphorylase superfamily ND012_RS02485 PF10144 Bacterial virulence factor haemolysin ND012_RS02490 PF18429 Domain of unknown function (DUF5609) ND012_RS02495 PF18073 Rubredoxin metal binding domain ND012_RS02500 PF13521 AAA domain ND012_RS02500 PF01381 Helix-turn-helix ND012_RS02505 PF00005 ABC transporter ND012_RS02505 PF12848 ABC transporter ND012_RS02520 PF00690 Cation transporter/ATPase, N-terminus ND012_RS02520 PF00689 Cation transporting ATPase, C-terminus ND012_RS02525 PF14718 Soluble lytic murein transglycosylase L domain ND012_RS02525 PF01464 Transglycosylase SLT domain ND012_RS02530 PF01371 Trp repressor protein ND012_RS02535 PF01931 Protein of unknown function DUF84 ND012_RS02540 PF00300 Histidine phosphatase superfamily (branch 1) ND012_RS02545 PF06445 GyrI-like small molecule binding domain ND012_RS02545 PF12833 Helix-turn-helix domain ND012_RS02550 PF05981 CreA protein ND012_RS02555 PF00072 Response regulator receiver domain ND012_RS02555 PF00486 Transcriptional regulatory protein, C terminal ND012_RS02565 PF08254 Threonine leader peptide ND012_RS02570 PF00742 Homoserine dehydrogenase ND012_RS02570 PF00696 Amino acid kinase family ND012_RS02570 PF01842 ACT domain ND012_RS02570 PF13840 ACT domain ND012_RS02570 PF03447 Homoserine dehydrogenase, NAD binding domain ND012_RS02575 PF08544 GHMP kinases C terminal ND012_RS02575 PF00288 GHMP kinases N terminal domain ND012_RS02580 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS02580 PF14821 Threonine synthase N terminus ND012_RS02585 PF03883 Peroxide stress protein YaaA ND012_RS02590 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND012_RS02595 PF00994 Probable molybdopterin binding domain ND012_RS02600 PF07690 Major Facilitator Superfamily ND012_RS02610 PF01184 GPR1/FUN34/yaaH family ND012_RS02615 PF00012 Hsp70 protein ND012_RS02620 PF01556 DnaJ C terminal domain ND012_RS02620 PF00226 DnaJ domain ND012_RS02620 PF00684 DnaJ central domain ND012_RS02625 PF06965 Na+/H+ antiporter 1 ND012_RS02630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS02630 PF03466 LysR substrate binding domain ND012_RS02635 PF01649 Ribosomal protein S20 ND012_RS02640 PF06574 FAD synthetase ND012_RS02640 PF01687 Riboflavin kinase ND012_RS02645 PF08264 Anticodon-binding domain of tRNA ND012_RS02645 PF00133 tRNA synthetases class I (I, L, M and V) ND012_RS02645 PF06827 Zinc finger found in FPG and IleRS ND012_RS02650 PF01252 Signal peptidase (SPase) II ND012_RS02655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_RS02660 PF02401 LytB protein ND012_RS02665 PF05173 Dihydrodipicolinate reductase, C-terminus ND012_RS02665 PF01113 Dihydrodipicolinate reductase, N-terminus ND012_RS02670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ND012_RS02670 PF00117 Glutamine amidotransferase class-I ND012_RS02675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND012_RS02675 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ND012_RS02675 PF02142 MGS-like domain ND012_RS02680 PF01810 LysE type translocator ND012_RS02685 PF06738 Putative threonine/serine exporter ND012_RS02690 PF12821 Threonine/Serine exporter, ThrE ND012_RS02695 PF00186 Dihydrofolate reductase ND012_RS02705 PF00149 Calcineurin-like phosphoesterase ND012_RS02710 PF04379 ApaG domain ND012_RS02715 PF00398 Ribosomal RNA adenine dimethylase ND012_RS02720 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ND012_RS02725 PF09312 SurA N-terminal domain ND012_RS02725 PF00639 PPIC-type PPIASE domain ND012_RS02730 PF03968 OstA-like protein ND012_RS02730 PF04453 LPS transport system D ND012_RS02735 PF00226 DnaJ domain ND012_RS02735 PF05099 Tellurite resistance protein TerB ND012_RS02740 PF00849 RNA pseudouridylate synthase ND012_RS02745 PF12137 RNA polymerase recycling family C-terminal ND012_RS02745 PF00176 SNF2 family N-terminal domain ND012_RS02745 PF18339 RapA N-terminal Tudor like domain 1 ND012_RS02745 PF18337 RapA N-terminal Tudor like domain ND012_RS02745 PF00271 Helicase conserved C-terminal domain ND012_RS02750 PF00136 DNA polymerase family B ND012_RS02750 PF03104 DNA polymerase family B, exonuclease domain ND012_RS02755 PF09335 SNARE associated Golgi protein ND012_RS02760 PF00005 ABC transporter ND012_RS02765 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS02775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_RS02775 PF12793 Sugar transport-related sRNA regulator N-term ND012_RS02785 PF07690 Major Facilitator Superfamily ND012_RS02790 PF00694 Aconitase C-terminal domain ND012_RS02795 PF00330 Aconitase family (aconitate hydratase) ND012_RS02800 PF00180 Isocitrate/isopropylmalate dehydrogenase ND012_RS02805 PF08502 LeuA allosteric (dimerisation) domain ND012_RS02805 PF00682 HMGL-like ND012_RS02815 PF00501 AMP-binding enzyme ND012_RS02820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND012_RS02820 PF00205 Thiamine pyrophosphate enzyme, central domain ND012_RS02820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_RS02825 PF10369 Small subunit of acetolactate synthase ND012_RS02830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND012_RS02830 PF00356 Bacterial regulatory proteins, lacI family ND012_RS02835 PF01797 Transposase IS200 like ND012_RS02840 PF12323 Helix-turn-helix domain ND012_RS02840 PF01385 Probable transposase ND012_RS02840 PF07282 Putative transposase DNA-binding domain ND012_RS02845 PF06610 L-alanine exporter ND012_RS02850 PF02381 MraZ protein, putative antitoxin-like ND012_RS02855 PF01795 MraW methylase family ND012_RS02860 PF04999 Cell division protein FtsL ND012_RS02865 PF03717 Penicillin-binding Protein dimerisation domain ND012_RS02865 PF00905 Penicillin binding protein transpeptidase domain ND012_RS02870 PF01225 Mur ligase family, catalytic domain ND012_RS02870 PF02875 Mur ligase family, glutamate ligase domain ND012_RS02870 PF08245 Mur ligase middle domain ND012_RS02875 PF01225 Mur ligase family, catalytic domain ND012_RS02875 PF02875 Mur ligase family, glutamate ligase domain ND012_RS02875 PF08245 Mur ligase middle domain ND012_RS02880 PF00953 Glycosyl transferase family 4 ND012_RS02880 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ND012_RS02885 PF08245 Mur ligase middle domain ND012_RS02885 PF02875 Mur ligase family, glutamate ligase domain ND012_RS02890 PF01098 Cell cycle protein ND012_RS02895 PF03033 Glycosyltransferase family 28 N-terminal domain ND012_RS02895 PF04101 Glycosyltransferase family 28 C-terminal domain ND012_RS02900 PF08245 Mur ligase middle domain ND012_RS02900 PF02875 Mur ligase family, glutamate ligase domain ND012_RS02900 PF01225 Mur ligase family, catalytic domain ND012_RS02905 PF07478 D-ala D-ala ligase C-terminus ND012_RS02905 PF01820 D-ala D-ala ligase N-terminus ND012_RS02910 PF08478 POTRA domain, FtsQ-type ND012_RS02910 PF03799 Cell division protein FtsQ ND012_RS02915 PF02491 SHS2 domain inserted in FTSA ND012_RS02920 PF00091 Tubulin/FtsZ family, GTPase domain ND012_RS02920 PF12327 FtsZ family, C-terminal domain ND012_RS02925 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ND012_RS02935 PF06558 Secretion monitor precursor protein (SecM) ND012_RS02940 PF07517 SecA DEAD-like domain ND012_RS02940 PF01043 SecA preprotein cross-linking domain ND012_RS02940 PF07516 SecA Wing and Scaffold domain ND012_RS02940 PF02810 SEC-C motif ND012_RS02945 PF00293 NUDIX domain ND012_RS02950 PF03884 DNA gyrase inhibitor YacG ND012_RS02955 PF07072 Cell division protein ND012_RS02960 PF01121 Dephospho-CoA kinase ND012_RS02965 PF00478 IMP dehydrogenase / GMP reductase domain ND012_RS02970 PF00482 Type II secretion system (T2SS), protein F ND012_RS02975 PF00437 Type II/IV secretion system protein ND012_RS02975 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ND012_RS02980 PF07963 Prokaryotic N-terminal methylation motif ND012_RS02985 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ND012_RS02985 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ND012_RS02990 PF01510 N-acetylmuramoyl-L-alanine amidase ND012_RS02995 PF17113 Regulatory signalling modulator protein AmpE ND012_RS03000 PF00324 Amino acid permease ND012_RS03005 PF07729 FCD domain ND012_RS03005 PF00392 Bacterial regulatory proteins, gntR family ND012_RS03010 PF17831 Pyruvate dehydrogenase E1 component middle domain ND012_RS03010 PF00456 Transketolase, thiamine diphosphate binding domain ND012_RS03015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND012_RS03015 PF00364 Biotin-requiring enzyme ND012_RS03015 PF02817 e3 binding domain ND012_RS03020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND012_RS03020 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS03030 PF06434 Aconitate hydratase 2 N-terminus ND012_RS03030 PF00330 Aconitase family (aconitate hydratase) ND012_RS03030 PF11791 Aconitate B N-terminal domain ND012_RS03035 PF06062 Uncharacterised protein family (UPF0231) ND012_RS03040 PF00892 EamA-like transporter family ND012_RS03045 PF02675 S-adenosylmethionine decarboxylase ND012_RS03050 PF17284 Spermidine synthase tetramerisation domain ND012_RS03055 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) ND012_RS03060 PF00394 Multicopper oxidase ND012_RS03060 PF07731 Multicopper oxidase ND012_RS03060 PF07732 Multicopper oxidase ND012_RS03060 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND012_RS03065 PF00156 Phosphoribosyl transferase domain ND012_RS03070 PF00484 Carbonic anhydrase ND012_RS03075 PF00005 ABC transporter ND012_RS03080 PF01061 ABC-2 type transporter ND012_RS03085 PF01522 Polysaccharide deacetylase ND012_RS03090 PF02261 Aspartate decarboxylase ND012_RS03095 PF02569 Pantoate-beta-alanine ligase ND012_RS03100 PF02548 Ketopantoate hydroxymethyltransferase ND012_RS03105 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ND012_RS03110 PF01743 Poly A polymerase head domain ND012_RS03110 PF12626 Polymerase A arginine-rich C-terminus ND012_RS03110 PF12627 Probable RNA and SrmB- binding site of polymerase A ND012_RS03115 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND012_RS03120 PF01258 Prokaryotic dksA/traR C4-type zinc finger ND012_RS03125 PF17746 SfsA N-terminal OB domain ND012_RS03125 PF03749 Sugar fermentation stimulation protein RE domain ND012_RS03130 PF02834 LigT like Phosphoesterase ND012_RS03135 PF00270 DEAD/DEAH box helicase ND012_RS03135 PF04408 Helicase associated domain (HA2) ND012_RS03135 PF00271 Helicase conserved C-terminal domain ND012_RS03135 PF08482 ATP-dependent helicase C-terminal ND012_RS03140 PF00912 Transglycosylase ND012_RS03140 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal ND012_RS03140 PF00905 Penicillin binding protein transpeptidase domain ND012_RS03140 PF14814 Bifunctional transglycosylase second domain ND012_RS03145 PF00202 Aminotransferase class-III ND012_RS03150 PF00654 Voltage gated chloride channel ND012_RS03155 PF01521 Iron-sulphur cluster biosynthesis ND012_RS03160 PF03458 UPF0126 domain ND012_RS03165 PF01497 Periplasmic binding protein ND012_RS03170 PF01048 Phosphorylase superfamily ND012_RS03175 PF13286 Phosphohydrolase-associated domain ND012_RS03175 PF01966 HD domain ND012_RS03180 PF00595 PDZ domain ND012_RS03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS03185 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND012_RS03185 PF00072 Response regulator receiver domain ND012_RS03185 PF01627 Hpt domain ND012_RS03185 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS03185 PF00672 HAMP domain ND012_RS03190 PF05958 tRNA (Uracil-5-)-methyltransferase ND012_RS03190 PF01938 TRAM domain ND012_RS03195 PF02824 TGS domain ND012_RS03195 PF13291 ACT domain ND012_RS03195 PF04607 Region found in RelA / SpoT proteins ND012_RS03200 PF03819 MazG nucleotide pyrophosphohydrolase domain ND012_RS03205 PF00117 Glutamine amidotransferase class-I ND012_RS03205 PF06418 CTP synthase N-terminus ND012_RS03210 PF03952 Enolase, N-terminal domain ND012_RS03210 PF00113 Enolase, C-terminal TIM barrel domain ND012_RS03215 PF04055 Radical SAM superfamily ND012_RS03220 PF01242 6-pyruvoyl tetrahydropterin synthase ND012_RS03225 PF00667 FAD binding domain ND012_RS03225 PF00258 Flavodoxin ND012_RS03225 PF00175 Oxidoreductase NAD-binding domain ND012_RS03230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ND012_RS03230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ND012_RS03235 PF01507 Phosphoadenosine phosphosulfate reductase family ND012_RS03250 PF04389 Peptidase family M28 ND012_RS03255 PF10414 Sirohaem synthase dimerisation region ND012_RS03255 PF14824 Sirohaem biosynthesis protein central ND012_RS03255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND012_RS03260 PF01507 Phosphoadenosine phosphosulfate reductase family ND012_RS03265 PF00009 Elongation factor Tu GTP binding domain ND012_RS03275 PF12084 Protein of unknown function (DUF3561) ND012_RS03280 PF04977 Septum formation initiator ND012_RS03285 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ND012_RS03290 PF02542 YgbB family ND012_RS03295 PF01142 tRNA pseudouridine synthase D (TruD) ND012_RS03300 PF01975 Survival protein SurE ND012_RS03315 PF01551 Peptidase family M23 ND012_RS03315 PF01476 LysM domain ND012_RS03320 PF04542 Sigma-70 region 2 ND012_RS03320 PF04539 Sigma-70 region 3 ND012_RS03320 PF04545 Sigma-70, region 4 ND012_RS03320 PF00140 Sigma-70 factor, region 1.2 ND012_RS03325 PF05192 MutS domain III ND012_RS03325 PF05188 MutS domain II ND012_RS03325 PF01624 MutS domain I ND012_RS03325 PF00488 MutS domain V ND012_RS03325 PF05190 MutS family domain IV ND012_RS03360 PF13193 AMP-binding enzyme C-terminal domain ND012_RS03360 PF00550 Phosphopantetheine attachment site ND012_RS03360 PF00501 AMP-binding enzyme ND012_RS03360 PF00668 Condensation domain ND012_RS03395 PF05681 Fumarate hydratase (Fumerase) ND012_RS03395 PF05683 Fumarase C-terminus ND012_RS03400 PF07690 Major Facilitator Superfamily ND012_RS03405 PF02464 Competence-damaged protein ND012_RS03410 PF00154 recA bacterial DNA recombination protein ND012_RS03415 PF02631 RecX family ND012_RS03420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND012_RS03420 PF02272 DHHA1 domain ND012_RS03420 PF01411 tRNA synthetases class II (A) ND012_RS03425 PF02599 Global regulator protein family ND012_RS03450 PF01411 tRNA synthetases class II (A) ND012_RS03450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND012_RS03455 PF13419 Haloacid dehalogenase-like hydrolase ND012_RS03460 PF09335 SNARE associated Golgi protein ND012_RS03465 PF04262 Glutamate-cysteine ligase ND012_RS03470 PF02664 S-Ribosylhomocysteinase (LuxS) ND012_RS03475 PF03471 Transporter associated domain ND012_RS03475 PF01595 Cyclin M transmembrane N-terminal domain ND012_RS03475 PF00571 CBS domain ND012_RS03480 PF01578 Cytochrome C assembly protein ND012_RS03485 PF02978 Signal peptide binding domain ND012_RS03485 PF02881 SRP54-type protein, helical bundle domain ND012_RS03485 PF00448 SRP54-type protein, GTPase domain ND012_RS03490 PF00886 Ribosomal protein S16 ND012_RS03495 PF05239 PRC-barrel domain ND012_RS03495 PF01782 RimM N-terminal domain ND012_RS03500 PF01746 tRNA (Guanine-1)-methyltransferase ND012_RS03505 PF01245 Ribosomal protein L19 ND012_RS03510 PF04338 Protein of unknown function, DUF481 ND012_RS03515 PF03605 Anaerobic c4-dicarboxylate membrane transporter ND012_RS03520 PF00072 Response regulator receiver domain ND012_RS03520 PF04397 LytTr DNA-binding domain ND012_RS03525 PF00793 DAHP synthetase I family ND012_RS03530 PF01817 Chorismate mutase type II ND012_RS03530 PF02153 Prephenate dehydrogenase ND012_RS03535 PF01817 Chorismate mutase type II ND012_RS03535 PF00800 Prephenate dehydratase ND012_RS03545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND012_RS03550 PF13525 Outer membrane lipoprotein ND012_RS03555 PF00849 RNA pseudouridylate synthase ND012_RS03555 PF01479 S4 domain ND012_RS03560 PF02578 Multi-copper polyphenol oxidoreductase laccase ND012_RS03565 PF10431 C-terminal, D2-small domain, of ClpB protein ND012_RS03565 PF02861 Clp amino terminal domain, pathogenicity island component ND012_RS03565 PF17871 AAA lid domain ND012_RS03565 PF00004 ATPase family associated with various cellular activities (AAA) ND012_RS03565 PF07724 AAA domain (Cdc48 subfamily) ND012_RS03600 PF03372 Endonuclease/Exonuclease/phosphatase family ND012_RS03605 PF01464 Transglycosylase SLT domain ND012_RS03605 PF01476 LysM domain ND012_RS03610 PF00753 Metallo-beta-lactamase superfamily ND012_RS03610 PF16123 Hydroxyacylglutathione hydrolase C-terminus ND012_RS03615 PF08241 Methyltransferase domain ND012_RS03620 PF00075 RNase H ND012_RS03625 PF00929 Exonuclease ND012_RS03635 PF09317 Domain of unknown function (DUF1974) ND012_RS03635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND012_RS03635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND012_RS03640 PF13580 SIS domain ND012_RS03645 PF13230 Glutamine amidotransferases class-II ND012_RS03650 PF03734 L,D-transpeptidase catalytic domain ND012_RS03655 PF11973 NQRA C-terminal domain ND012_RS03655 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ND012_RS03660 PF03116 NQR2, RnfD, RnfE family ND012_RS03665 PF04205 FMN-binding domain ND012_RS03670 PF02508 Rnf-Nqr subunit, membrane protein ND012_RS03675 PF02508 Rnf-Nqr subunit, membrane protein ND012_RS03680 PF00970 Oxidoreductase FAD-binding domain ND012_RS03680 PF00175 Oxidoreductase NAD-binding domain ND012_RS03680 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_RS03685 PF02424 ApbE family ND012_RS03690 PF04400 (Na+)-NQR maturation NqrM ND012_RS03695 PF03009 Glycerophosphoryl diester phosphodiesterase family ND012_RS03700 PF00817 impB/mucB/samB family ND012_RS03700 PF11799 impB/mucB/samB family C-terminal domain ND012_RS03700 PF11798 IMS family HHH motif ND012_RS03705 PF07687 Peptidase dimerisation domain ND012_RS03705 PF01546 Peptidase family M20/M25/M40 ND012_RS03710 PF00156 Phosphoribosyl transferase domain ND012_RS03715 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) ND012_RS03720 PF07417 Sigma factor-binding transcriptional regulator Crl ND012_RS03725 PF00696 Amino acid kinase family ND012_RS03725 PF01472 PUA domain ND012_RS03730 PF00171 Aldehyde dehydrogenase family ND012_RS03735 PF07238 PilZ domain ND012_RS03735 PF07317 Flagellar regulator YcgR ND012_RS03760 PF07715 TonB-dependent Receptor Plug Domain ND012_RS03760 PF00593 TonB dependent receptor ND012_RS03765 PF01202 Shikimate kinase ND012_RS03785 PF07302 AroM protein ND012_RS03790 PF06865 Pyrimidine/purine nucleoside phosphorylase ND012_RS03795 PF04381 Putative exonuclease, RdgC ND012_RS03800 PF00480 ROK family ND012_RS03805 PF13476 AAA domain ND012_RS03810 PF00149 Calcineurin-like phosphoesterase ND012_RS03810 PF12320 Type 5 capsule protein repressor C-terminal domain ND012_RS03815 PF00072 Response regulator receiver domain ND012_RS03815 PF00486 Transcriptional regulatory protein, C terminal ND012_RS03820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS03820 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS03820 PF11808 Phosphate regulon sensor protein PhoR ND012_RS03820 PF00989 PAS fold ND012_RS03825 PF12849 PBP superfamily domain ND012_RS03830 PF05525 Branched-chain amino acid transport protein ND012_RS03835 PF00324 Amino acid permease ND012_RS03840 PF00128 Alpha amylase, catalytic domain ND012_RS03840 PF02903 Alpha amylase, N-terminal ig-like domain ND012_RS03850 PF10417 C-terminal domain of 1-Cys peroxiredoxin ND012_RS03850 PF00578 AhpC/TSA family ND012_RS03855 PF04336 Acyl carrier protein phosphodiesterase ND012_RS03860 PF02547 Queuosine biosynthesis protein ND012_RS03865 PF01702 Queuine tRNA-ribosyltransferase ND012_RS03870 PF02699 Preprotein translocase subunit ND012_RS03875 PF07549 SecD/SecF GG Motif ND012_RS03875 PF13721 SecD export protein N-terminal TM region ND012_RS03875 PF02355 Protein export membrane protein ND012_RS03880 PF02355 Protein export membrane protein ND012_RS03880 PF07549 SecD/SecF GG Motif ND012_RS03885 PF03477 ATP cone domain ND012_RS03890 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND012_RS03890 PF01872 RibD C-terminal domain ND012_RS03895 PF00885 6,7-dimethyl-8-ribityllumazine synthase ND012_RS03900 PF01029 NusB family ND012_RS03905 PF00586 AIR synthase related protein, N-terminal domain ND012_RS03905 PF02769 AIR synthase related protein, C-terminal domain ND012_RS03910 PF04608 Phosphatidylglycerophosphatase A ND012_RS03915 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ND012_RS03915 PF02780 Transketolase, C-terminal domain ND012_RS03915 PF02779 Transketolase, pyrimidine binding domain ND012_RS03920 PF00348 Polyprenyl synthetase ND012_RS03925 PF02609 Exonuclease VII small subunit ND012_RS03930 PF02568 Thiamine biosynthesis protein (ThiI) ND012_RS03930 PF02926 THUMP domain ND012_RS03935 PF02954 Bacterial regulatory protein, Fis family ND012_RS03935 PF14532 Sigma-54 interaction domain ND012_RS03935 PF00072 Response regulator receiver domain ND012_RS03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS03940 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS03940 PF00672 HAMP domain ND012_RS03950 PF07690 Major Facilitator Superfamily ND012_RS03955 PF01965 DJ-1/PfpI family ND012_RS03960 PF02558 Ketopantoate reductase PanE/ApbA ND012_RS03960 PF08546 Ketopantoate reductase PanE/ApbA C terminal ND012_RS03965 PF04461 Protein of unknown function (DUF520) ND012_RS03970 PF07690 Major Facilitator Superfamily ND012_RS03975 PF01040 UbiA prenyltransferase family ND012_RS03980 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ND012_RS03985 PF00510 Cytochrome c oxidase subunit III ND012_RS03990 PF00115 Cytochrome C and Quinol oxidase polypeptide I ND012_RS03995 PF06481 COX Aromatic Rich Motif ND012_RS03995 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ND012_RS04000 PF03502 Nucleoside-specific channel-forming protein, Tsx ND012_RS04005 PF07690 Major Facilitator Superfamily ND012_RS04010 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND012_RS04010 PF03923 Uncharacterized lipoprotein ND012_RS04015 PF01722 BolA-like protein ND012_RS04020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ND012_RS04020 PF05698 Bacterial trigger factor protein (TF) C-terminus ND012_RS04020 PF05697 Bacterial trigger factor protein (TF) ND012_RS04025 PF00574 Clp protease ND012_RS04030 PF07724 AAA domain (Cdc48 subfamily) ND012_RS04030 PF10431 C-terminal, D2-small domain, of ClpB protein ND012_RS04030 PF06689 ClpX C4-type zinc finger ND012_RS04035 PF00004 ATPase family associated with various cellular activities (AAA) ND012_RS04035 PF05362 Lon protease (S16) C-terminal proteolytic domain ND012_RS04035 PF02190 ATP-dependent protease La (LON) substrate-binding domain ND012_RS04040 PF00216 Bacterial DNA-binding protein ND012_RS04045 PF13145 PPIC-type PPIASE domain ND012_RS04060 PF06508 Queuosine biosynthesis protein QueC ND012_RS04065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_RS04065 PF12793 Sugar transport-related sRNA regulator N-term ND012_RS04080 PF01037 Lrp/AsnC ligand binding domain ND012_RS04080 PF13404 AsnC-type helix-turn-helix domain ND012_RS04085 PF00664 ABC transporter transmembrane region ND012_RS04085 PF00005 ABC transporter ND012_RS04090 PF00664 ABC transporter transmembrane region ND012_RS04090 PF00005 ABC transporter ND012_RS04095 PF00543 Nitrogen regulatory protein P-II ND012_RS04100 PF00909 Ammonium Transporter Family ND012_RS04110 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND012_RS04120 PF05321 Haemolysin expression modulating protein ND012_RS04125 PF10757 Biofilm formation regulator YbaJ ND012_RS04135 PF00444 Ribosomal protein L36 ND012_RS04140 PF01197 Ribosomal protein L31 ND012_RS04145 PF00873 AcrB/AcrD/AcrF family ND012_RS04150 PF00529 HlyD membrane-fusion protein of T1SS ND012_RS04150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_RS04155 PF00440 Bacterial regulatory proteins, tetR family ND012_RS04155 PF08361 MAATS-type transcriptional repressor, C-terminal region ND012_RS04160 PF02635 DsrE/DsrF-like family ND012_RS04165 PF00924 Mechanosensitive ion channel ND012_RS04165 PF12795 Mechanosensitive ion channel porin domain ND012_RS04165 PF12794 Mechanosensitive ion channel inner membrane domain 1 ND012_RS04170 PF10689 Protein of unknown function (DUF2496) ND012_RS04180 PF04304 Protein of unknown function (DUF454) ND012_RS04185 PF00156 Phosphoribosyl transferase domain ND012_RS04190 PF01970 Tripartite tricarboxylate transporter TctA family ND012_RS04205 PF00072 Response regulator receiver domain ND012_RS04205 PF00486 Transcriptional regulatory protein, C terminal ND012_RS04210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS04210 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS04215 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ND012_RS04215 PF12170 DNA polymerase III tau subunit V interacting with alpha ND012_RS04215 PF12169 DNA polymerase III subunits gamma and tau domain III ND012_RS04220 PF02575 YbaB/EbfC DNA-binding family ND012_RS04225 PF02132 RecR protein ND012_RS04225 PF13662 Toprim domain ND012_RS04230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS04230 PF00183 Hsp90 protein ND012_RS04235 PF05191 Adenylate kinase, active site lid ND012_RS04240 PF00762 Ferrochelatase ND012_RS04245 PF02706 Chain length determinant protein ND012_RS04250 PF00294 pfkB family carbohydrate kinase ND012_RS04255 PF00999 Sodium/hydrogen exchanger family ND012_RS04255 PF02254 TrkA-N domain ND012_RS04260 PF02872 5'-nucleotidase, C-terminal domain ND012_RS04260 PF00149 Calcineurin-like phosphoesterase ND012_RS04265 PF04073 Aminoacyl-tRNA editing domain ND012_RS04270 PF01963 TraB family ND012_RS04275 PF00403 Heavy-metal-associated domain ND012_RS04280 PF13411 MerR HTH family regulatory protein ND012_RS04285 PF01957 NfeD-like C-terminal, partner-binding ND012_RS04290 PF01145 SPFH domain / Band 7 family ND012_RS04290 PF16200 C-terminal region of band_7 ND012_RS04295 PF00085 Thioredoxin ND012_RS04300 PF00106 short chain dehydrogenase ND012_RS04305 PF13472 GDSL-like Lipase/Acylhydrolase family ND012_RS04310 PF00005 ABC transporter ND012_RS04320 PF02222 ATP-grasp domain ND012_RS04320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ND012_RS04325 PF00731 AIR carboxylase ND012_RS04330 PF00149 Calcineurin-like phosphoesterase ND012_RS04335 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ND012_RS04340 PF09190 DALR domain ND012_RS04340 PF01406 tRNA synthetases class I (C) catalytic domain ND012_RS04355 PF00419 Fimbrial protein ND012_RS04360 PF13953 PapC C-terminal domain ND012_RS04360 PF00577 Outer membrane usher protein ND012_RS04360 PF13954 PapC N-terminal domain ND012_RS04365 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_RS04365 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_RS04400 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ND012_RS04400 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ND012_RS04410 PF01022 Bacterial regulatory protein, arsR family ND012_RS04415 PF02040 Arsenical pump membrane protein ND012_RS04420 PF03960 ArsC family ND012_RS04430 PF00501 AMP-binding enzyme ND012_RS04455 PF01292 Prokaryotic cytochrome b561 ND012_RS04465 PF00343 Carbohydrate phosphorylase ND012_RS04475 PF00486 Transcriptional regulatory protein, C terminal ND012_RS04475 PF00072 Response regulator receiver domain ND012_RS04485 PF00483 Nucleotidyl transferase ND012_RS04495 PF00535 Glycosyl transferase family 2 ND012_RS04495 PF03552 Cellulose synthase ND012_RS04495 PF07238 PilZ domain ND012_RS04515 PF16355 Domain of unknown function (DUF4982) ND012_RS04515 PF00703 Glycosyl hydrolases family 2 ND012_RS04515 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND012_RS04515 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND012_RS04520 PF01627 Hpt domain ND012_RS04520 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS04520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS04520 PF00672 HAMP domain ND012_RS04520 PF00072 Response regulator receiver domain ND012_RS04520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND012_RS04525 PF00072 Response regulator receiver domain ND012_RS04525 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS04530 PF00440 Bacterial regulatory proteins, tetR family ND012_RS04555 PF00196 Bacterial regulatory proteins, luxR family ND012_RS04560 PF00313 'Cold-shock' DNA-binding domain ND012_RS04565 PF00313 'Cold-shock' DNA-binding domain ND012_RS04570 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ND012_RS04580 PF05230 MASE2 domain ND012_RS04580 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS04585 PF02416 mttA/Hcf106 family ND012_RS04590 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ND012_RS04590 PF04055 Radical SAM superfamily ND012_RS04595 PF03099 Biotin/lipoate A/B protein ligase family ND012_RS04600 PF04359 Protein of unknown function (DUF493) ND012_RS04605 PF07943 Penicillin-binding protein 5, C-terminal domain ND012_RS04605 PF00768 D-alanyl-D-alanine carboxypeptidase ND012_RS04610 PF03330 Lytic transglycolase ND012_RS04610 PF05036 Sporulation related domain ND012_RS04615 PF01098 Cell cycle protein ND012_RS04620 PF00905 Penicillin binding protein transpeptidase domain ND012_RS04620 PF03717 Penicillin-binding Protein dimerisation domain ND012_RS04625 PF02590 Predicted SPOUT methyltransferase ND012_RS04635 PF01467 Cytidylyltransferase-like ND012_RS04640 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ND012_RS04640 PF06144 DNA polymerase III, delta subunit ND012_RS04645 PF04390 Lipopolysaccharide-assembly ND012_RS04650 PF08264 Anticodon-binding domain of tRNA ND012_RS04650 PF00133 tRNA synthetases class I (I, L, M and V) ND012_RS04650 PF13603 Leucyl-tRNA synthetase, Domain 2 ND012_RS04655 PF07295 Zinc-ribbon containing domain ND012_RS04660 PF00005 ABC transporter ND012_RS04665 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS04670 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS04675 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS04680 PF00795 Carbon-nitrogen hydrolase ND012_RS04685 PF03471 Transporter associated domain ND012_RS04685 PF00571 CBS domain ND012_RS04690 PF02130 Uncharacterized protein family UPF0054 ND012_RS04695 PF02562 PhoH-like protein ND012_RS04700 PF04055 Radical SAM superfamily ND012_RS04700 PF01938 TRAM domain ND012_RS04700 PF00919 Uncharacterized protein family UPF0004 ND012_RS04705 PF01494 FAD binding domain ND012_RS04740 PF00733 Asparagine synthase ND012_RS04740 PF13537 Glutamine amidotransferase domain ND012_RS04745 PF13344 Haloacid dehalogenase-like hydrolase ND012_RS04750 PF01047 MarR family ND012_RS04750 PF00480 ROK family ND012_RS04755 PF01979 Amidohydrolase family ND012_RS04760 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ND012_RS04765 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND012_RS04765 PF00367 phosphotransferase system, EIIB ND012_RS04765 PF02378 Phosphotransferase system, EIIC ND012_RS04770 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND012_RS04770 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ND012_RS04775 PF03573 outer membrane porin, OprD family ND012_RS04780 PF13982 YbfN-like lipoprotein ND012_RS04785 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ND012_RS04785 PF03173 Putative carbohydrate binding domain ND012_RS04785 PF02838 Glycosyl hydrolase family 20, domain 2 ND012_RS04785 PF00728 Glycosyl hydrolase family 20, catalytic domain ND012_RS04790 PF01475 Ferric uptake regulator family ND012_RS04795 PF00258 Flavodoxin ND012_RS04800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_RS04800 PF02203 Tar ligand binding domain homologue ND012_RS04800 PF00672 HAMP domain ND012_RS04805 PF01402 Ribbon-helix-helix protein, copG family ND012_RS04810 PF12697 Alpha/beta hydrolase family ND012_RS04815 PF03925 SeqA protein C-terminal domain ND012_RS04815 PF17206 SeqA protein N-terminal domain ND012_RS04820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ND012_RS04820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ND012_RS04820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ND012_RS04820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ND012_RS04830 PF00072 Response regulator receiver domain ND012_RS04830 PF00486 Transcriptional regulatory protein, C terminal ND012_RS04835 PF13492 GAF domain ND012_RS04835 PF13493 Domain of unknown function (DUF4118) ND012_RS04835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS04835 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS04835 PF02702 Osmosensitive K+ channel His kinase sensor domain ND012_RS04840 PF02669 K+-transporting ATPase, c chain ND012_RS04850 PF03814 Potassium-transporting ATPase A subunit ND012_RS04855 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) ND012_RS04860 PF10725 Protein of unknown function (DUF2517) ND012_RS04865 PF08349 Protein of unknown function (DUF1722) ND012_RS04870 PF03441 FAD binding domain of DNA photolyase ND012_RS04870 PF00875 DNA photolyase ND012_RS04875 PF02112 cAMP phosphodiesterases class-II ND012_RS04880 PF01784 NIF3 (NGG1p interacting factor 3) ND012_RS04885 PF02682 Carboxyltransferase domain, subdomain C and D ND012_RS04890 PF02626 Carboxyltransferase domain, subdomain A and B ND012_RS04895 PF03746 LamB/YcsF family ND012_RS04910 PF01470 Pyroglutamyl peptidase ND012_RS04920 PF00285 Citrate synthase, C-terminal domain ND012_RS04925 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND012_RS04930 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ND012_RS04935 PF02910 Fumarate reductase flavoprotein C-term ND012_RS04935 PF00890 FAD binding domain ND012_RS04940 PF13085 2Fe-2S iron-sulfur cluster binding domain ND012_RS04945 PF00676 Dehydrogenase E1 component ND012_RS04945 PF16870 2-oxoglutarate dehydrogenase C-terminal ND012_RS04945 PF02779 Transketolase, pyrimidine binding domain ND012_RS04945 PF16078 2-oxoglutarate dehydrogenase N-terminus ND012_RS04950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ND012_RS04950 PF00364 Biotin-requiring enzyme ND012_RS04950 PF02817 e3 binding domain ND012_RS04955 PF08442 ATP-grasp domain ND012_RS04955 PF00549 CoA-ligase ND012_RS04960 PF02629 CoA binding domain ND012_RS04960 PF00549 CoA-ligase ND012_RS04970 PF01654 Cytochrome bd terminal oxidase subunit I ND012_RS04975 PF02322 Cytochrome bd terminal oxidase subunit II ND012_RS04980 PF08173 Membrane bound YbgT-like protein ND012_RS04985 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) ND012_RS04990 PF03061 Thioesterase superfamily ND012_RS04995 PF01618 MotA/TolQ/ExbB proton channel family ND012_RS05000 PF02472 Biopolymer transport protein ExbD/TolR ND012_RS05005 PF06519 TolA C-terminal ND012_RS05005 PF06519 TolA C-terminal ND012_RS05010 PF04052 TolB amino-terminal domain ND012_RS05010 PF07676 WD40-like Beta Propeller Repeat ND012_RS05015 PF00691 OmpA family ND012_RS05020 PF13174 Tetratricopeptide repeat ND012_RS05020 PF16331 TolA binding protein trimerisation ND012_RS05050 PF02445 Quinolinate synthetase A protein ND012_RS05055 PF04973 Nicotinamide mononucleotide transporter ND012_RS05060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS05060 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS05060 PF01627 Hpt domain ND012_RS05060 PF00072 Response regulator receiver domain ND012_RS05060 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS05060 PF00989 PAS fold ND012_RS05065 PF00196 Bacterial regulatory proteins, luxR family ND012_RS05065 PF00072 Response regulator receiver domain ND012_RS05070 PF00793 DAHP synthetase I family ND012_RS05075 PF00300 Histidine phosphatase superfamily (branch 1) ND012_RS05085 PF01263 Aldose 1-epimerase ND012_RS05090 PF10509 Galactokinase galactose-binding signature ND012_RS05090 PF08544 GHMP kinases C terminal ND012_RS05090 PF00288 GHMP kinases N terminal domain ND012_RS05095 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ND012_RS05095 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ND012_RS05100 PF16363 GDP-mannose 4,6 dehydratase ND012_RS05115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS05115 PF03459 TOBE domain ND012_RS05120 PF10766 Multidrug efflux pump-associated protein AcrZ ND012_RS05130 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05135 PF03459 TOBE domain ND012_RS05135 PF00005 ABC transporter ND012_RS05145 PF10282 Lactonase, 7-bladed beta-propeller ND012_RS05150 PF00202 Aminotransferase class-III ND012_RS05155 PF04055 Radical SAM superfamily ND012_RS05155 PF06968 Biotin and Thiamin Synthesis associated domain ND012_RS05160 PF00155 Aminotransferase class I and II ND012_RS05165 PF08241 Methyltransferase domain ND012_RS05175 PF00005 ABC transporter ND012_RS05180 PF04851 Type III restriction enzyme, res subunit ND012_RS05180 PF02151 UvrB/uvrC motif ND012_RS05180 PF12344 Ultra-violet resistance protein B ND012_RS05180 PF17757 UvrB interaction domain ND012_RS05180 PF00271 Helicase conserved C-terminal domain ND012_RS05185 PF09905 DNA-binding protein VF530 ND012_RS05200 PF01032 FecCD transport family ND012_RS05205 PF00005 ABC transporter ND012_RS05210 PF01933 Uncharacterised protein family UPF0052 ND012_RS05215 PF04055 Radical SAM superfamily ND012_RS05215 PF06463 Molybdenum Cofactor Synthesis C ND012_RS05220 PF01967 MoaC family ND012_RS05225 PF02597 ThiS family ND012_RS05230 PF02391 MoaE protein ND012_RS05235 PF01027 Inhibitor of apoptosis-promoting Bax1 ND012_RS05250 PF00005 ABC transporter ND012_RS05255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_RS05260 PF09209 Tetracyclin repressor-like, C-terminal domain ND012_RS05260 PF00440 Bacterial regulatory proteins, tetR family ND012_RS05265 PF00270 DEAD/DEAH box helicase ND012_RS05265 PF00271 Helicase conserved C-terminal domain ND012_RS05270 PF01207 Dihydrouridine synthase (Dus) ND012_RS05280 PF00768 D-alanyl-D-alanine carboxypeptidase ND012_RS05285 PF09330 D-lactate dehydrogenase, membrane binding ND012_RS05285 PF01565 FAD binding domain ND012_RS05290 PF01928 CYTH domain ND012_RS05295 PF01844 HNH endonuclease ND012_RS05305 PF04226 Transglycosylase associated protein ND012_RS05310 PF00005 ABC transporter ND012_RS05320 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05330 PF07308 Protein of unknown function (DUF1456) ND012_RS05335 PF00581 Rhodanese-like domain ND012_RS05340 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND012_RS05345 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05350 PF00005 ABC transporter ND012_RS05355 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05360 PF13520 Amino acid permease ND012_RS05365 PF01276 Orn/Lys/Arg decarboxylase, major domain ND012_RS05365 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND012_RS05365 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND012_RS05375 PF00892 EamA-like transporter family ND012_RS05380 PF00267 Gram-negative porin ND012_RS05385 PF13307 Helicase C-terminal domain ND012_RS05385 PF06733 DEAD_2 ND012_RS05390 PF02885 Glycosyl transferase family, helical bundle domain ND012_RS05395 PF05971 RNA methyltransferase ND012_RS05400 PF00005 ABC transporter ND012_RS05405 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05410 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS05415 PF00210 Ferritin-like domain ND012_RS05420 PF13649 Methyltransferase domain ND012_RS05425 PF00892 EamA-like transporter family ND012_RS05430 PF13505 Outer membrane protein beta-barrel domain ND012_RS05435 PF00571 CBS domain ND012_RS05435 PF01769 Divalent cation transporter ND012_RS05435 PF03448 MgtE intracellular N domain ND012_RS05440 PF01545 Cation efflux family ND012_RS05440 PF16916 Dimerisation domain of Zinc Transporter ND012_RS05445 PF00005 ABC transporter ND012_RS05445 PF12848 ABC transporter ND012_RS05450 PF00899 ThiF family ND012_RS05455 PF03454 MoeA C-terminal region (domain IV) ND012_RS05455 PF03453 MoeA N-terminal region (domain I and II) ND012_RS05455 PF00994 Probable molybdopterin binding domain ND012_RS05465 PF00756 Putative esterase ND012_RS05470 PF08240 Alcohol dehydrogenase GroES-like domain ND012_RS05470 PF00107 Zinc-binding dehydrogenase ND012_RS05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS05475 PF03466 LysR substrate binding domain ND012_RS05480 PF06779 Uncharacterised MFS-type transporter YbfB ND012_RS05485 PF01227 GTP cyclohydrolase I ND012_RS05490 PF04235 Protein of unknown function (DUF418) ND012_RS05495 PF00356 Bacterial regulatory proteins, lacI family ND012_RS05500 PF13407 Periplasmic binding protein domain ND012_RS05505 PF00005 ABC transporter ND012_RS05510 PF02653 Branched-chain amino acid transport system / permease component ND012_RS05515 PF02698 DUF218 domain ND012_RS05520 PF03949 Malic enzyme, NAD binding domain ND012_RS05520 PF00390 Malic enzyme, N-terminal domain ND012_RS05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS05530 PF03466 LysR substrate binding domain ND012_RS05535 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ND012_RS05535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ND012_RS05540 PF04172 LrgB-like family ND012_RS05545 PF03788 LrgA family ND012_RS05555 PF09334 tRNA synthetases class I (M) ND012_RS05555 PF01588 Putative tRNA binding domain ND012_RS05560 PF10609 NUBPL iron-transfer P-loop NTPase ND012_RS05565 PF00485 Phosphoribulokinase / Uridine kinase family ND012_RS05570 PF00692 dUTPase ND012_RS05575 PF05170 AsmA family ND012_RS05580 PF03606 C4-dicarboxylate anaerobic carrier ND012_RS05585 PF03741 Integral membrane protein TerC family ND012_RS05585 PF03471 Transporter associated domain ND012_RS05585 PF00571 CBS domain ND012_RS05590 PF00483 Nucleotidyl transferase ND012_RS05595 PF00483 Nucleotidyl transferase ND012_RS05600 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ND012_RS05600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ND012_RS05610 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ND012_RS05610 PF01502 Phosphoribosyl-AMP cyclohydrolase ND012_RS05615 PF00977 Histidine biosynthesis protein ND012_RS05620 PF00977 Histidine biosynthesis protein ND012_RS05625 PF00117 Glutamine amidotransferase class-I ND012_RS05630 PF00475 Imidazoleglycerol-phosphate dehydratase ND012_RS05635 PF00155 Aminotransferase class I and II ND012_RS05640 PF00815 Histidinol dehydrogenase ND012_RS05645 PF01634 ATP phosphoribosyltransferase ND012_RS05645 PF08029 HisG, C-terminal domain ND012_RS05655 PF01370 NAD dependent epimerase/dehydratase family ND012_RS05660 PF00043 Glutathione S-transferase, C-terminal domain ND012_RS05660 PF13417 Glutathione S-transferase, N-terminal domain ND012_RS05675 PF01053 Cys/Met metabolism PLP-dependent enzyme ND012_RS05680 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS05680 PF00571 CBS domain ND012_RS05685 PF00768 D-alanyl-D-alanine carboxypeptidase ND012_RS05685 PF07943 Penicillin-binding protein 5, C-terminal domain ND012_RS05690 PF03313 Serine dehydratase alpha chain ND012_RS05690 PF03315 Serine dehydratase beta chain ND012_RS05700 PF00455 DeoR C terminal sensor domain ND012_RS05700 PF08220 DeoR-like helix-turn-helix domain ND012_RS05705 PF01791 DeoC/LacD family aldolase ND012_RS05710 PF01569 PAP2 superfamily ND012_RS05720 PF06826 Predicted Permease Membrane Region ND012_RS05720 PF02080 TrkA-C domain ND012_RS05725 PF00462 Glutaredoxin ND012_RS05730 PF07214 Protein of unknown function (DUF1418) ND012_RS05735 PF10722 Putative bacterial sensory transduction regulator ND012_RS05740 PF13416 Bacterial extracellular solute-binding protein ND012_RS05745 PF08402 TOBE domain ND012_RS05745 PF00005 ABC transporter ND012_RS05750 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05755 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05760 PF10767 Protein of unknown function (DUF2593) ND012_RS05765 PF05958 tRNA (Uracil-5-)-methyltransferase ND012_RS05770 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS05775 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05780 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS05785 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS05790 PF00005 ABC transporter ND012_RS05795 PF12883 Protein of unknown function (DUF3828) ND012_RS05800 PF01906 Putative heavy-metal-binding ND012_RS05805 PF01370 NAD dependent epimerase/dehydratase family ND012_RS05810 PF13460 NAD(P)H-binding ND012_RS05810 PF11066 Protein of unknown function (DUF2867) ND012_RS05815 PF01212 Beta-eliminating lyase ND012_RS05820 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_RS05820 PF00175 Oxidoreductase NAD-binding domain ND012_RS05820 PF00970 Oxidoreductase FAD-binding domain ND012_RS05825 PF03063 Prismane/CO dehydrogenase family ND012_RS05830 PF03956 Lysine exporter LysO ND012_RS05835 PF11398 Protein of unknown function (DUF2813) ND012_RS05840 PF04393 Protein of unknown function (DUF535) ND012_RS05845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_RS05850 PF12704 MacB-like periplasmic core domain ND012_RS05850 PF00005 ABC transporter ND012_RS05850 PF02687 FtsX-like permease family ND012_RS05855 PF00313 'Cold-shock' DNA-binding domain ND012_RS05860 PF02617 ATP-dependent Clp protease adaptor protein ClpS ND012_RS05865 PF07724 AAA domain (Cdc48 subfamily) ND012_RS05865 PF17871 AAA lid domain ND012_RS05865 PF02861 Clp amino terminal domain, pathogenicity island component ND012_RS05865 PF10431 C-terminal, D2-small domain, of ClpB protein ND012_RS05865 PF00004 ATPase family associated with various cellular activities (AAA) ND012_RS05870 PF01176 Translation initiation factor 1A / IF-1 ND012_RS05875 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ND012_RS05880 PF00664 ABC transporter transmembrane region ND012_RS05880 PF00005 ABC transporter ND012_RS05885 PF00664 ABC transporter transmembrane region ND012_RS05885 PF00005 ABC transporter ND012_RS05890 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS05895 PF01037 Lrp/AsnC ligand binding domain ND012_RS05900 PF01580 FtsK/SpoIIIE family ND012_RS05900 PF09397 Ftsk gamma domain ND012_RS05900 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ND012_RS05900 PF17854 FtsK alpha domain ND012_RS05905 PF03548 Outer membrane lipoprotein carrier protein LolA ND012_RS05910 PF00004 ATPase family associated with various cellular activities (AAA) ND012_RS05910 PF16193 AAA C-terminal domain ND012_RS05910 PF12002 MgsA AAA+ ATPase C terminal ND012_RS05915 PF02403 Seryl-tRNA synthetase N-terminal domain ND012_RS05915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND012_RS05920 PF07690 Major Facilitator Superfamily ND012_RS05925 PF04055 Radical SAM superfamily ND012_RS05930 PF01228 Glycine radical ND012_RS05930 PF02901 Pyruvate formate lyase-like ND012_RS05935 PF01226 Formate/nitrite transporter ND012_RS05940 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ND012_RS05940 PF18381 YcaO cyclodehydratase C-terminal domain ND012_RS05945 PF00710 Asparaginase, N-terminal ND012_RS05945 PF17763 Glutaminase/Asparaginase C-terminal domain ND012_RS05950 PF00266 Aminotransferase class-V ND012_RS05955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND012_RS05960 PF02224 Cytidylate kinase ND012_RS05965 PF00575 S1 RNA binding domain ND012_RS05970 PF00216 Bacterial DNA-binding protein ND012_RS05975 PF03772 Competence protein ND012_RS05975 PF00753 Metallo-beta-lactamase superfamily ND012_RS05980 PF00664 ABC transporter transmembrane region ND012_RS05980 PF00005 ABC transporter ND012_RS05985 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ND012_RS05990 PF07063 Domain of unknown function (DUF1338) ND012_RS05995 PF00313 'Cold-shock' DNA-binding domain ND012_RS06000 PF00313 'Cold-shock' DNA-binding domain ND012_RS06005 PF03966 Trm112p-like protein ND012_RS06010 PF02348 Cytidylyltransferase ND012_RS06015 PF01636 Phosphotransferase enzyme family ND012_RS06020 PF02698 DUF218 domain ND012_RS06025 PF13847 Methyltransferase domain ND012_RS06030 PF03882 MukF winged-helix domain ND012_RS06030 PF17193 MukF C-terminal domain ND012_RS06030 PF17192 MukF middle domain ND012_RS06035 PF04288 MukE-like family ND012_RS06040 PF04310 MukB N-terminal ND012_RS06040 PF16330 MukB hinge domain ND012_RS06045 PF01471 Putative peptidoglycan binding domain ND012_RS06045 PF03734 L,D-transpeptidase catalytic domain ND012_RS06050 PF05951 Bacterial protein of unknown function (DUF882) ND012_RS06055 PF00753 Metallo-beta-lactamase superfamily ND012_RS06060 PF00155 Aminotransferase class I and II ND012_RS06065 PF00267 Gram-negative porin ND012_RS06070 PF00152 tRNA synthetases class II (D, K and N) ND012_RS06070 PF01336 OB-fold nucleic acid binding domain ND012_RS06075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ND012_RS06075 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ND012_RS06080 PF11940 Domain of unknown function (DUF3458) Ig-like fold ND012_RS06080 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ND012_RS06080 PF01433 Peptidase family M1 domain ND012_RS06085 PF01180 Dihydroorotate dehydrogenase ND012_RS06090 PF07126 Cell-division protein ZapC ND012_RS06095 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_RS06095 PF03473 MOSC domain ND012_RS06095 PF03476 MOSC N-terminal beta barrel domain ND012_RS06100 PF10672 S-adenosylmethionine-dependent methyltransferase ND012_RS06100 PF02926 THUMP domain ND012_RS06100 PF01170 Putative RNA methylase family UPF0020 ND012_RS06105 PF00005 ABC transporter ND012_RS06105 PF16326 ABC transporter C-terminal domain ND012_RS06105 PF12848 ABC transporter ND012_RS06110 PF04403 Paraquat-inducible protein A ND012_RS06115 PF02470 MlaD protein ND012_RS06120 PF03886 ABC-type transport auxiliary lipoprotein component ND012_RS06125 PF04957 Ribosome modulation factor ND012_RS06130 PF07977 FabA-like domain ND012_RS06135 PF13654 AAA domain ND012_RS06135 PF05362 Lon protease (S16) C-terminal proteolytic domain ND012_RS06140 PF17414 MatP C-terminal ribbon-helix-helix domain ND012_RS06140 PF06303 MatP N-terminal domain ND012_RS06145 PF00691 OmpA family ND012_RS06145 PF01389 OmpA-like transmembrane domain ND012_RS06150 PF03846 Cell division inhibitor SulA ND012_RS06155 PF04994 TfoX C-terminal domain ND012_RS06155 PF04993 TfoX N-terminal domain ND012_RS06160 PF12805 FUSC-like inner membrane protein yccS ND012_RS06165 PF03733 Inner membrane component domain ND012_RS06170 PF12462 DNA helicase IV / RNA helicase N terminal ND012_RS06170 PF00580 UvrD/REP helicase N-terminal domain ND012_RS06170 PF13361 UvrD-like helicase C-terminal domain ND012_RS06175 PF02142 MGS-like domain ND012_RS06180 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ND012_RS06185 PF13380 CoA binding domain ND012_RS06190 PF08755 Hemimethylated DNA-binding protein YccV like ND012_RS06195 PF17785 PUA-like domain ND012_RS06195 PF10672 S-adenosylmethionine-dependent methyltransferase ND012_RS06200 PF00708 Acylphosphatase ND012_RS06205 PF04358 DsrC like protein ND012_RS06215 PF00484 Carbonic anhydrase ND012_RS06220 PF03471 Transporter associated domain ND012_RS06220 PF00999 Sodium/hydrogen exchanger family ND012_RS06220 PF02080 TrkA-C domain ND012_RS06230 PF01757 Acyltransferase family ND012_RS06235 PF04349 Periplasmic glucan biosynthesis protein, MdoG ND012_RS06240 PF00535 Glycosyl transferase family 2 ND012_RS06250 PF00854 POT family ND012_RS06260 PF03279 Bacterial lipid A biosynthesis acyltransferase ND012_RS06265 PF12368 Rhodanase C-terminal ND012_RS06265 PF17773 UPF0176 acylphosphatase like domain ND012_RS06265 PF00581 Rhodanese-like domain ND012_RS06270 PF01594 AI-2E family transporter ND012_RS06275 PF00196 Bacterial regulatory proteins, luxR family ND012_RS06280 PF01266 FAD dependent oxidoreductase ND012_RS06285 PF13991 BssS protein family ND012_RS06290 PF06183 DinI-like family ND012_RS06295 PF01979 Amidohydrolase family ND012_RS06300 PF03992 Antibiotic biosynthesis monooxygenase ND012_RS06310 PF12111 Polyribonucleotide phosphorylase C terminal ND012_RS06310 PF10150 Ribonuclease E/G family ND012_RS06310 PF00575 S1 RNA binding domain ND012_RS06315 PF00849 RNA pseudouridylate synthase ND012_RS06315 PF01479 S4 domain ND012_RS06320 PF02545 Maf-like protein ND012_RS06325 PF02620 Large ribosomal RNA subunit accumulation protein YceD ND012_RS06330 PF01783 Ribosomal L32p protein family ND012_RS06335 PF02504 Fatty acid synthesis protein ND012_RS06340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ND012_RS06340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ND012_RS06345 PF00698 Acyl transferase domain ND012_RS06355 PF00550 Phosphopantetheine attachment site ND012_RS06360 PF00109 Beta-ketoacyl synthase, N-terminal domain ND012_RS06360 PF02801 Beta-ketoacyl synthase, C-terminal domain ND012_RS06365 PF01063 Amino-transferase class IV ND012_RS06370 PF02618 YceG-like family ND012_RS06375 PF02223 Thymidylate kinase ND012_RS06380 PF09115 DNA polymerase III, delta subunit, C terminal ND012_RS06385 PF01026 TatD related DNase ND012_RS06390 PF02378 Phosphotransferase system, EIIC ND012_RS06390 PF00367 phosphotransferase system, EIIB ND012_RS06395 PF01230 HIT domain ND012_RS06400 PF07233 Protein of unknown function (DUF1425) ND012_RS06405 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ND012_RS06405 PF13036 Peptidoglycan-synthase activator LpoB ND012_RS06410 PF01636 Phosphotransferase enzyme family ND012_RS06415 PF00933 Glycosyl hydrolase family 3 N terminal domain ND012_RS06420 PF05728 Uncharacterised protein family (UPF0227) ND012_RS06425 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS06430 PF05433 Glycine zipper 2TM domain ND012_RS06435 PF17757 UvrB interaction domain ND012_RS06435 PF02559 CarD-like/TRCF domain ND012_RS06435 PF00271 Helicase conserved C-terminal domain ND012_RS06435 PF00270 DEAD/DEAH box helicase ND012_RS06435 PF03461 TRCF domain ND012_RS06440 PF12704 MacB-like periplasmic core domain ND012_RS06440 PF02687 FtsX-like permease family ND012_RS06445 PF00005 ABC transporter ND012_RS06450 PF02687 FtsX-like permease family ND012_RS06450 PF12704 MacB-like periplasmic core domain ND012_RS06455 PF00480 ROK family ND012_RS06460 PF02146 Sir2 family ND012_RS06465 PF07687 Peptidase dimerisation domain ND012_RS06465 PF01546 Peptidase family M20/M25/M40 ND012_RS06470 PF08007 Cupin superfamily protein ND012_RS06475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS06475 PF08918 PhoQ Sensor ND012_RS06480 PF00072 Response regulator receiver domain ND012_RS06480 PF00486 Transcriptional regulatory protein, C terminal ND012_RS06490 PF08328 Adenylosuccinate lyase C-terminal ND012_RS06490 PF00206 Lyase ND012_RS06495 PF04356 Protein of unknown function (DUF489) ND012_RS06505 PF00293 NUDIX domain ND012_RS06510 PF00849 RNA pseudouridylate synthase ND012_RS06515 PF00180 Isocitrate/isopropylmalate dehydrogenase ND012_RS06520 PF00196 Bacterial regulatory proteins, luxR family ND012_RS06520 PF03472 Autoinducer binding domain ND012_RS06525 PF00765 Autoinducer synthase ND012_RS06530 PF00232 Glycosyl hydrolase family 1 ND012_RS06540 PF01432 Peptidase family M3 ND012_RS06550 PF03390 2-hydroxycarboxylate transporter family ND012_RS06555 PF00072 Response regulator receiver domain ND012_RS06560 PF17203 Single cache domain 3 ND012_RS06560 PF00989 PAS fold ND012_RS06560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS06560 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND012_RS06565 PF00939 Sodium:sulfate symporter transmembrane region ND012_RS06570 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ND012_RS06570 PF00413 Matrixin ND012_RS06570 PF08548 Peptidase M10 serralysin C terminal ND012_RS06575 PF02974 Protease inhibitor Inh ND012_RS06580 PF00005 ABC transporter ND012_RS06580 PF00664 ABC transporter transmembrane region ND012_RS06585 PF00529 HlyD membrane-fusion protein of T1SS ND012_RS06590 PF02321 Outer membrane efflux protein ND012_RS06605 PF02311 AraC-like ligand binding domain ND012_RS06605 PF12833 Helix-turn-helix domain ND012_RS06610 PF02562 PhoH-like protein ND012_RS06615 PF01699 Sodium/calcium exchanger protein ND012_RS06620 PF04954 Siderophore-interacting protein ND012_RS06620 PF08021 Siderophore-interacting FAD-binding domain ND012_RS06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS06625 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ND012_RS06625 PF00672 HAMP domain ND012_RS06625 PF07730 Histidine kinase ND012_RS06635 PF02322 Cytochrome bd terminal oxidase subunit II ND012_RS06640 PF01654 Cytochrome bd terminal oxidase subunit I ND012_RS06645 PF00155 Aminotransferase class I and II ND012_RS06645 PF00392 Bacterial regulatory proteins, gntR family ND012_RS06650 PF00202 Aminotransferase class-III ND012_RS06655 PF04958 Arginine N-succinyltransferase beta subunit ND012_RS06660 PF00171 Aldehyde dehydrogenase family ND012_RS06665 PF04996 Succinylarginine dihydrolase ND012_RS06670 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ND012_RS06675 PF00267 Gram-negative porin ND012_RS06685 PF01979 Amidohydrolase family ND012_RS06690 PF00392 Bacterial regulatory proteins, gntR family ND012_RS06690 PF07702 UTRA domain ND012_RS06695 PF01979 Amidohydrolase family ND012_RS06700 PF05962 HutD ND012_RS06705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS06705 PF03466 LysR substrate binding domain ND012_RS06715 PF03824 High-affinity nickel-transport protein ND012_RS06720 PF00708 Acylphosphatase ND012_RS06720 PF17788 HypF Kae1-like domain ND012_RS06720 PF01300 Telomere recombination ND012_RS06720 PF07503 HypF finger ND012_RS06725 PF01568 Molydopterin dinucleotide binding domain ND012_RS06725 PF00384 Molybdopterin oxidoreductase ND012_RS06725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND012_RS06730 PF12800 4Fe-4S binding domain ND012_RS06730 PF13247 4Fe-4S dicluster domain ND012_RS06735 PF01750 Hydrogenase maturation protease ND012_RS06740 PF07450 Formate hydrogenlyase maturation protein HycH ND012_RS06745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND012_RS06750 PF12838 4Fe-4S dicluster domain ND012_RS06755 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND012_RS06755 PF00374 Nickel-dependent hydrogenase ND012_RS06755 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND012_RS06760 PF00146 NADH dehydrogenase ND012_RS06765 PF00361 Proton-conducting membrane transporter ND012_RS06770 PF13247 4Fe-4S dicluster domain ND012_RS06775 PF11046 Transcriptional repressor of hyc and hyp operons ND012_RS06780 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ND012_RS06785 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND012_RS06790 PF01455 HupF/HypC family ND012_RS06795 PF01924 Hydrogenase formation hypA family ND012_RS06800 PF02769 AIR synthase related protein, C-terminal domain ND012_RS06800 PF00586 AIR synthase related protein, N-terminal domain ND012_RS06805 PF02954 Bacterial regulatory protein, Fis family ND012_RS06805 PF00158 Sigma-54 interaction domain ND012_RS06805 PF01590 GAF domain ND012_RS06815 PF13954 PapC N-terminal domain ND012_RS06815 PF00577 Outer membrane usher protein ND012_RS06820 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_RS06820 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_RS06835 PF12833 Helix-turn-helix domain ND012_RS06840 PF01926 50S ribosome-binding GTPase ND012_RS06840 PF06071 Protein of unknown function (DUF933) ND012_RS06850 PF01195 Peptidyl-tRNA hydrolase ND012_RS06855 PF10762 Protein of unknown function (DUF2583) ND012_RS06860 PF14572 Phosphoribosyl synthetase-associated domain ND012_RS06860 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ND012_RS06865 PF00288 GHMP kinases N terminal domain ND012_RS06865 PF08544 GHMP kinases C terminal ND012_RS06870 PF03550 Outer membrane lipoprotein LolB ND012_RS06875 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ND012_RS06875 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ND012_RS06875 PF01488 Shikimate / quinate 5-dehydrogenase ND012_RS06880 PF03462 PCRF domain ND012_RS06880 PF00472 RF-1 domain ND012_RS06885 PF13847 Methyltransferase domain ND012_RS06885 PF17827 PrmC N-terminal domain ND012_RS06890 PF04247 Invasion gene expression up-regulator, SirB ND012_RS06895 PF13369 Transglutaminase-like superfamily ND012_RS06900 PF00793 DAHP synthetase I family ND012_RS06905 PF00916 Sulfate permease family ND012_RS06905 PF01740 STAS domain ND012_RS06910 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS06920 PF03009 Glycerophosphoryl diester phosphodiesterase family ND012_RS06930 PF00854 POT family ND012_RS06935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND012_RS06940 PF02811 PHP domain ND012_RS06945 PF02613 Nitrate reductase delta subunit ND012_RS06950 PF07273 Protein of unknown function (DUF1439) ND012_RS06960 PF07690 Major Facilitator Superfamily ND012_RS06965 PF13302 Acetyltransferase (GNAT) domain ND012_RS06970 PF04337 Protein of unknown function, DUF480 ND012_RS06975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND012_RS06980 PF03023 Lipid II flippase MurJ ND012_RS06985 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND012_RS06985 PF17287 POTRA domain ND012_RS06985 PF08479 POTRA domain, ShlB-type ND012_RS06990 PF05860 haemagglutination activity domain ND012_RS06990 PF13332 Hemagglutinin repeat ND012_RS07000 PF00750 tRNA synthetases class I (R) ND012_RS07000 PF03485 Arginyl tRNA synthetase N terminal domain ND012_RS07000 PF05746 DALR anticodon binding domain ND012_RS07005 PF06185 YecM protein ND012_RS07010 PF03932 CutC family ND012_RS07015 PF08003 Protein of unknown function (DUF1698) ND012_RS07020 PF13649 Methyltransferase domain ND012_RS07025 PF01124 MAPEG family ND012_RS07030 PF01904 Protein of unknown function DUF72 ND012_RS07040 PF02938 GAD domain ND012_RS07040 PF00152 tRNA synthetases class II (D, K and N) ND012_RS07040 PF01336 OB-fold nucleic acid binding domain ND012_RS07045 PF00293 NUDIX domain ND012_RS07050 PF01709 Transcriptional regulator ND012_RS07055 PF02075 Crossover junction endodeoxyribonuclease RuvC ND012_RS07060 PF07499 RuvA, C-terminal domain ND012_RS07060 PF01330 RuvA N terminal domain ND012_RS07065 PF17864 RuvB AAA lid domain ND012_RS07065 PF05491 RuvB C-terminal winged helix domain ND012_RS07065 PF05496 Holliday junction DNA helicase RuvB P-loop domain ND012_RS07070 PF00854 POT family ND012_RS07075 PF00950 ABC 3 transport family ND012_RS07080 PF00005 ABC transporter ND012_RS07085 PF01297 Zinc-uptake complex component A periplasmic ND012_RS07090 PF01551 Peptidase family M23 ND012_RS07090 PF01476 LysM domain ND012_RS07090 PF08525 Opacity-associated protein A N-terminal motif ND012_RS07095 PF03279 Bacterial lipid A biosynthesis acyltransferase ND012_RS07100 PF00224 Pyruvate kinase, barrel domain ND012_RS07100 PF02887 Pyruvate kinase, alpha/beta domain ND012_RS07105 PF01418 Helix-turn-helix domain, rpiR family ND012_RS07105 PF01380 SIS domain ND012_RS07110 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ND012_RS07110 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ND012_RS07115 PF01081 KDPG and KHG aldolase ND012_RS07120 PF00893 Small Multidrug Resistance protein ND012_RS07125 PF00893 Small Multidrug Resistance protein ND012_RS07130 PF01042 Endoribonuclease L-PSP ND012_RS07135 PF13307 Helicase C-terminal domain ND012_RS07135 PF04851 Type III restriction enzyme, res subunit ND012_RS07140 PF00814 Glycoprotease family ND012_RS07145 PF03843 Outer membrane lipoprotein Slp family ND012_RS07150 PF00501 AMP-binding enzyme ND012_RS07150 PF13193 AMP-binding enzyme C-terminal domain ND012_RS07155 PF01612 3'-5' exonuclease ND012_RS07155 PF00570 HRDC domain ND012_RS07160 PF03776 Septum formation topological specificity factor MinE ND012_RS07165 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ND012_RS07170 PF03775 Septum formation inhibitor MinC, C-terminal domain ND012_RS07170 PF05209 Septum formation inhibitor MinC, N-terminal domain ND012_RS07175 PF05166 YcgL domain ND012_RS07180 PF01557 Fumarylacetoacetate (FAA) hydrolase family ND012_RS07185 PF03692 Putative zinc- or iron-chelating domain ND012_RS07200 PF02600 Disulfide bond formation protein DsbB ND012_RS07205 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ND012_RS07210 PF00392 Bacterial regulatory proteins, gntR family ND012_RS07210 PF07840 FadR C-terminal domain ND012_RS07215 PF04293 SpoVR like protein ND012_RS07220 PF01266 FAD dependent oxidoreductase ND012_RS07225 PF01168 Alanine racemase, N-terminal domain ND012_RS07225 PF00842 Alanine racemase, C-terminal domain ND012_RS07230 PF07690 Major Facilitator Superfamily ND012_RS07240 PF00563 EAL domain ND012_RS07240 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS07240 PF13426 PAS domain ND012_RS07245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS07245 PF03466 LysR substrate binding domain ND012_RS07250 PF03306 Alpha-acetolactate decarboxylase ND012_RS07255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_RS07255 PF00205 Thiamine pyrophosphate enzyme, central domain ND012_RS07255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND012_RS07260 PF04285 Protein of unknown function (DUF444) ND012_RS07265 PF06798 PrkA serine protein kinase C-terminal domain ND012_RS07265 PF08298 PrkA AAA domain ND012_RS07275 PF06629 MltA-interacting protein MipA ND012_RS07280 PF00884 Sulfatase ND012_RS07285 PF01263 Aldose 1-epimerase ND012_RS07290 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND012_RS07290 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND012_RS07295 PF01641 SelR domain ND012_RS07300 PF07023 Protein of unknown function (DUF1315) ND012_RS07305 PF00857 Isochorismatase family ND012_RS07310 PF00710 Asparaginase, N-terminal ND012_RS07310 PF17763 Glutaminase/Asparaginase C-terminal domain ND012_RS07315 PF01343 Peptidase family S49 ND012_RS07320 PF00881 Nitroreductase family ND012_RS07325 PF02769 AIR synthase related protein, C-terminal domain ND012_RS07325 PF00586 AIR synthase related protein, N-terminal domain ND012_RS07330 PF01751 Toprim domain ND012_RS07330 PF01131 DNA topoisomerase ND012_RS07335 PF07383 Protein of unknown function (DUF1496) ND012_RS07340 PF00293 NUDIX domain ND012_RS07345 PF03372 Endonuclease/Exonuclease/phosphatase family ND012_RS07355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS07355 PF03466 LysR substrate binding domain ND012_RS07375 PF01842 ACT domain ND012_RS07375 PF00551 Formyl transferase ND012_RS07380 PF02810 SEC-C motif ND012_RS07385 PF01734 Patatin-like phospholipase ND012_RS07390 PF00072 Response regulator receiver domain ND012_RS07395 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND012_RS07395 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND012_RS07395 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND012_RS07400 PF00816 H-NS histone family ND012_RS07405 PF00265 Thymidine kinase ND012_RS07410 PF00171 Aldehyde dehydrogenase family ND012_RS07410 PF00465 Iron-containing alcohol dehydrogenase ND012_RS07420 PF01914 MarC family integral membrane protein ND012_RS07425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_RS07430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_RS07435 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS07440 PF12911 N-terminal TM domain of oligopeptide transport permease C ND012_RS07440 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS07445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_RS07445 PF00005 ABC transporter ND012_RS07450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_RS07450 PF00005 ABC transporter ND012_RS07455 PF04269 Protein of unknown function, DUF440 ND012_RS07460 PF13091 PLD-like domain ND012_RS07460 PF13396 Phospholipase_D-nuclease N-terminal ND012_RS07485 PF03795 YCII-related domain ND012_RS07500 PF00486 Transcriptional regulatory protein, C terminal ND012_RS07510 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_RS07510 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_RS07515 PF13953 PapC C-terminal domain ND012_RS07515 PF00577 Outer membrane usher protein ND012_RS07515 PF13954 PapC N-terminal domain ND012_RS07535 PF03544 Gram-negative bacterial TonB protein C-terminal ND012_RS07540 PF03061 Thioesterase superfamily ND012_RS07545 PF04279 Intracellular septation protein A ND012_RS07550 PF01740 STAS domain ND012_RS07550 PF00916 Sulfate permease family ND012_RS07560 PF03692 Putative zinc- or iron-chelating domain ND012_RS07565 PF03922 OmpW family ND012_RS07575 PF00290 Tryptophan synthase alpha chain ND012_RS07580 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS07585 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ND012_RS07585 PF00218 Indole-3-glycerol phosphate synthase ND012_RS07590 PF02885 Glycosyl transferase family, helical bundle domain ND012_RS07590 PF00591 Glycosyl transferase family, a/b domain ND012_RS07595 PF00117 Glutamine amidotransferase class-I ND012_RS07600 PF04715 Anthranilate synthase component I, N terminal region ND012_RS07600 PF00425 chorismate binding enzyme ND012_RS07605 PF02811 PHP domain ND012_RS07610 PF01300 Telomere recombination ND012_RS07615 PF01479 S4 domain ND012_RS07615 PF00849 RNA pseudouridylate synthase ND012_RS07620 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ND012_RS07625 PF00106 short chain dehydrogenase ND012_RS07630 PF01343 Peptidase family S49 ND012_RS07630 PF08496 Peptidase family S49 N-terminal ND012_RS07635 PF10692 Protein of unknown function (DUF2498) ND012_RS07640 PF08272 Topoisomerase I zinc-ribbon-like ND012_RS07640 PF01751 Toprim domain ND012_RS07640 PF01396 Topoisomerase DNA binding C4 zinc finger ND012_RS07640 PF01131 DNA topoisomerase ND012_RS07645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS07645 PF03466 LysR substrate binding domain ND012_RS07665 PF00330 Aconitase family (aconitate hydratase) ND012_RS07665 PF00694 Aconitase C-terminal domain ND012_RS07670 PF00925 GTP cyclohydrolase II ND012_RS07675 PF01569 PAP2 superfamily ND012_RS07680 PF06305 Lipopolysaccharide assembly protein A domain ND012_RS07685 PF18073 Rubredoxin metal binding domain ND012_RS07695 PF07338 Protein of unknown function (DUF1471) ND012_RS07700 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND012_RS07705 PF01253 Translation initiation factor SUI1 ND012_RS07710 PF05433 Glycine zipper 2TM domain ND012_RS07715 PF00923 Transaldolase/Fructose-6-phosphate aldolase ND012_RS07720 PF00563 EAL domain ND012_RS07720 PF05231 MASE1 ND012_RS07720 PF08447 PAS fold ND012_RS07720 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS07720 PF13426 PAS domain ND012_RS07720 PF08448 PAS fold ND012_RS07725 PF08206 Ribonuclease B OB domain ND012_RS07725 PF00773 RNB domain ND012_RS07725 PF00575 S1 RNA binding domain ND012_RS07730 PF10576 Iron-sulfur binding domain of endonuclease III ND012_RS07730 PF00633 Helix-hairpin-helix motif ND012_RS07730 PF00730 HhH-GPD superfamily base excision DNA repair protein ND012_RS07735 PF02508 Rnf-Nqr subunit, membrane protein ND012_RS07740 PF04205 FMN-binding domain ND012_RS07745 PF03116 NQR2, RnfD, RnfE family ND012_RS07750 PF12833 Helix-turn-helix domain ND012_RS07750 PF06445 GyrI-like small molecule binding domain ND012_RS07755 PF13375 RnfC Barrel sandwich hybrid domain ND012_RS07755 PF10531 SLBB domain ND012_RS07755 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND012_RS07755 PF13237 4Fe-4S dicluster domain ND012_RS07760 PF04060 Putative Fe-S cluster ND012_RS07765 PF02508 Rnf-Nqr subunit, membrane protein ND012_RS07770 PF10754 Protein of unknown function (DUF2569) ND012_RS07775 PF01268 Formate--tetrahydrofolate ligase ND012_RS07780 PF03848 Tellurite resistance protein TehB ND012_RS07780 PF09313 Domain of unknown function (DUF1971) ND012_RS07785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND012_RS07785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ND012_RS07790 PF13593 SBF-like CPA transporter family (DUF4137) ND012_RS07795 PF00962 Adenosine/AMP deaminase ND012_RS07800 PF06097 Bacterial protein of unknown function (DUF945) ND012_RS07805 PF01238 Phosphomannose isomerase type I ND012_RS07810 PF10415 Fumarase C C-terminus ND012_RS07810 PF00206 Lyase ND012_RS07815 PF05472 DNA replication terminus site-binding protein (Ter protein) ND012_RS07820 PF00480 ROK family ND012_RS07830 PF00654 Voltage gated chloride channel ND012_RS07835 PF06649 Protein of unknown function (DUF1161) ND012_RS07840 PF06932 Protein of unknown function (DUF1283) ND012_RS07845 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ND012_RS07850 PF00106 short chain dehydrogenase ND012_RS07855 PF01510 N-acetylmuramoyl-L-alanine amidase ND012_RS07875 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ND012_RS07875 PF01048 Phosphorylase superfamily ND012_RS07915 PF13419 Haloacid dehalogenase-like hydrolase ND012_RS07925 PF06445 GyrI-like small molecule binding domain ND012_RS07930 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ND012_RS07930 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ND012_RS07935 PF00027 Cyclic nucleotide-binding domain ND012_RS07935 PF13545 Crp-like helix-turn-helix domain ND012_RS07940 PF00582 Universal stress protein family ND012_RS07950 PF08220 DeoR-like helix-turn-helix domain ND012_RS07950 PF00455 DeoR C terminal sensor domain ND012_RS07955 PF03611 PTS system sugar-specific permease component ND012_RS07960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_RS07965 PF00596 Class II Aldolase and Adducin N-terminal domain ND012_RS07970 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ND012_RS07975 PF01261 Xylose isomerase-like TIM barrel ND012_RS07980 PF02233 NAD(P) transhydrogenase beta subunit ND012_RS07985 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ND012_RS07985 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ND012_RS07985 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ND012_RS07990 PF07338 Protein of unknown function (DUF1471) ND012_RS07995 PF13520 Amino acid permease ND012_RS08005 PF00072 Response regulator receiver domain ND012_RS08005 PF00486 Transcriptional regulatory protein, C terminal ND012_RS08010 PF00672 HAMP domain ND012_RS08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS08010 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS08015 PF00080 Copper/zinc superoxide dismutase (SODC) ND012_RS08025 PF12833 Helix-turn-helix domain ND012_RS08030 PF01161 Phosphatidylethanolamine-binding protein ND012_RS08035 PF06392 Acid shock protein repeat ND012_RS08040 PF00089 Trypsin ND012_RS08045 PF11898 Domain of unknown function (DUF3418) ND012_RS08045 PF04408 Helicase associated domain (HA2) ND012_RS08045 PF00271 Helicase conserved C-terminal domain ND012_RS08045 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ND012_RS08045 PF00270 DEAD/DEAH box helicase ND012_RS08050 PF02525 Flavodoxin-like fold ND012_RS08055 PF07027 Protein of unknown function (DUF1318) ND012_RS08060 PF13617 YnbE-like lipoprotein ND012_RS08070 PF11739 Dicarboxylate transport ND012_RS08075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND012_RS08075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND012_RS08080 PF03724 META domain ND012_RS08085 PF03891 Domain of unknown function (DUF333) ND012_RS08095 PF00893 Small Multidrug Resistance protein ND012_RS08100 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ND012_RS08100 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ND012_RS08100 PF10371 Domain of unknown function ND012_RS08100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_RS08100 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ND012_RS08105 PF01171 PP-loop family ND012_RS08110 PF01544 CorA-like Mg2+ transporter protein ND012_RS08115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_RS08120 PF00246 Zinc carboxypeptidase ND012_RS08125 PF13378 Enolase C-terminal domain-like ND012_RS08125 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ND012_RS08130 PF08534 Redoxin ND012_RS08135 PF18024 Helix-turn-helix domain ND012_RS08135 PF00158 Sigma-54 interaction domain ND012_RS08140 PF09722 Protein of unknown function (DUF2384) ND012_RS08145 PF08808 RES domain ND012_RS08150 PF05128 Domain of unknown function (DUF697) ND012_RS08155 PF04317 YcjX-like family, DUF463 ND012_RS08160 PF09584 Phage shock protein PspD (Phageshock_PspD) ND012_RS08165 PF04024 PspC domain ND012_RS08170 PF06667 Phage shock protein B ND012_RS08175 PF04012 PspA/IM30 family ND012_RS08180 PF00158 Sigma-54 interaction domain ND012_RS08180 PF02954 Bacterial regulatory protein, Fis family ND012_RS08190 PF02917 Pertussis toxin, subunit 1 ND012_RS08195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_RS08200 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS08205 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS08205 PF12911 N-terminal TM domain of oligopeptide transport permease C ND012_RS08210 PF00005 ABC transporter ND012_RS08210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_RS08215 PF00005 ABC transporter ND012_RS08225 PF00854 POT family ND012_RS08235 PF00226 DnaJ domain ND012_RS08235 PF01556 DnaJ C terminal domain ND012_RS08245 PF04893 Yip1 domain ND012_RS08255 PF11656 YjbD family (DUF3811) ND012_RS08260 PF02798 Glutathione S-transferase, N-terminal domain ND012_RS08260 PF00043 Glutathione S-transferase, C-terminal domain ND012_RS08265 PF08543 Phosphomethylpyrimidine kinase ND012_RS08270 PF01479 S4 domain ND012_RS08270 PF00579 tRNA synthetases class I (W and Y) ND012_RS08275 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ND012_RS08275 PF01243 Pyridoxamine 5'-phosphate oxidase ND012_RS08280 PF03702 Anhydro-N-acetylmuramic acid kinase ND012_RS08285 PF05433 Glycine zipper 2TM domain ND012_RS08290 PF01047 MarR family ND012_RS08300 PF00248 Aldo/keto reductase family ND012_RS08305 PF06945 Protein of unknown function (DUF1289) ND012_RS08310 PF00884 Sulfatase ND012_RS08310 PF08019 Phosphoethanolamine transferase EptA/EptB ND012_RS08315 PF16925 Tetracyclin repressor-like, C-terminal domain ND012_RS08315 PF00440 Bacterial regulatory proteins, tetR family ND012_RS08320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND012_RS08325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND012_RS08330 PF00929 Exonuclease ND012_RS08335 PF00462 Glutaredoxin ND012_RS08340 PF00877 NlpC/P60 family ND012_RS08345 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ND012_RS08345 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ND012_RS08355 PF00356 Bacterial regulatory proteins, lacI family ND012_RS08360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS08360 PF03466 LysR substrate binding domain ND012_RS08365 PF07690 Major Facilitator Superfamily ND012_RS08375 PF00677 Lumazine binding domain ND012_RS08380 PF01554 MatE ND012_RS08400 PF00224 Pyruvate kinase, barrel domain ND012_RS08400 PF02887 Pyruvate kinase, alpha/beta domain ND012_RS08405 PF04728 Lipoprotein leucine-zipper ND012_RS08410 PF03734 L,D-transpeptidase catalytic domain ND012_RS08410 PF01476 LysM domain ND012_RS08410 PF17969 L,D-transpeptidase C-terminal domain ND012_RS08415 PF02657 Fe-S metabolism associated domain ND012_RS08420 PF00266 Aminotransferase class-V ND012_RS08425 PF01458 Uncharacterized protein family (UPF0051) ND012_RS08430 PF00005 ABC transporter ND012_RS08435 PF01458 Uncharacterized protein family (UPF0051) ND012_RS08440 PF01521 Iron-sulphur cluster biosynthesis ND012_RS08445 PF03061 Thioesterase superfamily ND012_RS08450 PF13183 4Fe-4S dicluster domain ND012_RS08450 PF01565 FAD binding domain ND012_RS08450 PF02913 FAD linked oxidases, C-terminal domain ND012_RS08455 PF01594 AI-2E family transporter ND012_RS08465 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ND012_RS08465 PF02896 PEP-utilising enzyme, TIM barrel domain ND012_RS08465 PF00391 PEP-utilising enzyme, mobile domain ND012_RS08470 PF03618 Kinase/pyrophosphorylase ND012_RS08475 PF00793 DAHP synthetase I family ND012_RS08480 PF10636 Hemin uptake protein hemP ND012_RS08485 PF00593 TonB dependent receptor ND012_RS08485 PF07715 TonB-dependent Receptor Plug Domain ND012_RS08490 PF05171 Haemin-degrading HemS.ChuX domain ND012_RS08495 PF01497 Periplasmic binding protein ND012_RS08500 PF01032 FecCD transport family ND012_RS08505 PF00005 ABC transporter ND012_RS08510 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ND012_RS08515 PF10437 Bacterial lipoate protein ligase C-terminus ND012_RS08515 PF03099 Biotin/lipoate A/B protein ligase family ND012_RS08520 PF00877 NlpC/P60 family ND012_RS08530 PF00892 EamA-like transporter family ND012_RS08535 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ND012_RS08540 PF01522 Polysaccharide deacetylase ND012_RS08545 PF00551 Formyl transferase ND012_RS08545 PF01370 NAD dependent epimerase/dehydratase family ND012_RS08545 PF02911 Formyl transferase, C-terminal domain ND012_RS08550 PF00535 Glycosyl transferase family 2 ND012_RS08555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND012_RS08560 PF00005 ABC transporter ND012_RS08565 PF01032 FecCD transport family ND012_RS08570 PF02899 Phage integrase, N-terminal SAM-like domain ND012_RS08570 PF00589 Phage integrase family ND012_RS08600 PF04606 Ogr/Delta-like zinc finger ND012_RS08610 PF00216 Bacterial DNA-binding protein ND012_RS08615 PF03147 Ferredoxin-fold anticodon binding domain ND012_RS08615 PF03483 B3/4 domain ND012_RS08615 PF03484 tRNA synthetase B5 domain ND012_RS08615 PF01588 Putative tRNA binding domain ND012_RS08615 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ND012_RS08620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ND012_RS08620 PF01409 tRNA synthetases class II core domain (F) ND012_RS08625 PF00453 Ribosomal protein L20 ND012_RS08630 PF01632 Ribosomal protein L35 ND012_RS08635 PF00707 Translation initiation factor IF-3, C-terminal domain ND012_RS08635 PF05198 Translation initiation factor IF-3, N-terminal domain ND012_RS08640 PF03129 Anticodon binding domain ND012_RS08640 PF02824 TGS domain ND012_RS08640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND012_RS08640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ND012_RS08670 PF01914 MarC family integral membrane protein ND012_RS08675 PF01464 Transglycosylase SLT domain ND012_RS08680 PF01297 Zinc-uptake complex component A periplasmic ND012_RS08685 PF00005 ABC transporter ND012_RS08690 PF00950 ABC 3 transport family ND012_RS08695 PF00950 ABC 3 transport family ND012_RS08700 PF03881 Fructosamine kinase ND012_RS08705 PF14002 YniB-like protein ND012_RS08710 PF13419 Haloacid dehalogenase-like hydrolase ND012_RS08715 PF04307 LexA-binding, inner membrane-associated putative hydrolase ND012_RS08720 PF00375 Sodium:dicarboxylate symporter family ND012_RS08725 PF01510 N-acetylmuramoyl-L-alanine amidase ND012_RS08730 PF01614 Bacterial transcriptional regulator ND012_RS08730 PF09339 IclR helix-turn-helix domain ND012_RS08735 PF07690 Major Facilitator Superfamily ND012_RS08745 PF01435 Peptidase family M48 ND012_RS08750 PF11818 C-terminal domain of tail specific protease (DUF3340) ND012_RS08750 PF00595 PDZ domain ND012_RS08750 PF03572 Peptidase family S41 ND012_RS08750 PF17804 Tail specific protease N-terminal domain ND012_RS08755 PF04352 ProQ/FINO family ND012_RS08755 PF17516 ProQ C-terminal domain ND012_RS08760 PF13185 GAF domain ND012_RS08765 PF04403 Paraquat-inducible protein A ND012_RS08770 PF02470 MlaD protein ND012_RS08775 PF00360 Phytochrome region ND012_RS08775 PF01590 GAF domain ND012_RS08775 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS08775 PF00563 EAL domain ND012_RS08780 PF07351 Protein of unknown function (DUF1480) ND012_RS08805 PF05643 Putative bacterial lipoprotein (DUF799) ND012_RS08815 PF03783 Curli production assembly/transport component CsgG ND012_RS08820 PF10753 Toxin GhoT_OrtT ND012_RS08840 PF00144 Beta-lactamase ND012_RS08850 PF10709 Protein of unknown function (DUF2511) ND012_RS08855 PF05425 Copper resistance protein D ND012_RS08860 PF04234 CopC domain ND012_RS08865 PF00210 Ferritin-like domain ND012_RS08870 PF06440 DNA polymerase III, theta subunit ND012_RS08875 PF00561 alpha/beta hydrolase fold ND012_RS08880 PF00929 Exonuclease ND012_RS08885 PF00326 Prolyl oligopeptidase family ND012_RS08885 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ND012_RS08890 PF13995 YebF-like protein ND012_RS08895 PF04266 ASCH domain ND012_RS08900 PF07130 YebG protein ND012_RS08905 PF03880 DbpA RNA binding domain ND012_RS08905 PF00270 DEAD/DEAH box helicase ND012_RS08905 PF00271 Helicase conserved C-terminal domain ND012_RS08910 PF02222 ATP-grasp domain ND012_RS08915 PF03701 Uncharacterised protein family (UPF0181) ND012_RS08920 PF04715 Anthranilate synthase component I, N terminal region ND012_RS08920 PF00425 chorismate binding enzyme ND012_RS08925 PF00293 NUDIX domain ND012_RS08930 PF03315 Serine dehydratase beta chain ND012_RS08930 PF03313 Serine dehydratase alpha chain ND012_RS08935 PF03471 Transporter associated domain ND012_RS08935 PF03741 Integral membrane protein TerC family ND012_RS08940 PF03610 PTS system fructose IIA component ND012_RS08940 PF03830 PTS system sorbose subfamily IIB component ND012_RS08945 PF03609 PTS system sorbose-specific iic component ND012_RS08950 PF03613 PTS system mannose/fructose/sorbose family IID component ND012_RS08955 PF06173 Protein of unknown function (DUF986) ND012_RS08960 PF02659 Putative manganese efflux pump ND012_RS08965 PF02441 Flavoprotein ND012_RS08980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ND012_RS08980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ND012_RS08980 PF02770 Acyl-CoA dehydrogenase, middle domain ND012_RS08990 PF05199 GMC oxidoreductase ND012_RS08990 PF00732 GMC oxidoreductase ND012_RS08995 PF00501 AMP-binding enzyme ND012_RS08995 PF13193 AMP-binding enzyme C-terminal domain ND012_RS08995 PF00668 Condensation domain ND012_RS08995 PF00550 Phosphopantetheine attachment site ND012_RS09000 PF07690 Major Facilitator Superfamily ND012_RS09020 PF13847 Methyltransferase domain ND012_RS09025 PF00905 Penicillin binding protein transpeptidase domain ND012_RS09025 PF03717 Penicillin-binding Protein dimerisation domain ND012_RS09030 PF02578 Multi-copper polyphenol oxidoreductase laccase ND012_RS09035 PF00313 'Cold-shock' DNA-binding domain ND012_RS09040 PF10736 Protein of unknown function (DUF2627) ND012_RS09045 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP ND012_RS09050 PF00324 Amino acid permease ND012_RS09065 PF13974 YebO-like protein ND012_RS09070 PF13998 MgrB protein ND012_RS09075 PF13996 YobH-like protein ND012_RS09080 PF10964 Protein of unknown function (DUF2766) ND012_RS09085 PF12833 Helix-turn-helix domain ND012_RS09100 PF13520 Amino acid permease ND012_RS09105 PF00664 ABC transporter transmembrane region ND012_RS09105 PF00005 ABC transporter ND012_RS09115 PF00360 Phytochrome region ND012_RS09115 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS09115 PF00563 EAL domain ND012_RS09115 PF01590 GAF domain ND012_RS09120 PF03372 Endonuclease/Exonuclease/phosphatase family ND012_RS09130 PF06411 HdeA/HdeB family ND012_RS09135 PF07478 D-ala D-ala ligase C-terminus ND012_RS09135 PF01820 D-ala D-ala ligase N-terminus ND012_RS09150 PF08241 Methyltransferase domain ND012_RS09155 PF00313 'Cold-shock' DNA-binding domain ND012_RS09160 PF00313 'Cold-shock' DNA-binding domain ND012_RS09170 PF04794 YdjC-like protein ND012_RS09175 PF12833 Helix-turn-helix domain ND012_RS09175 PF07883 Cupin domain ND012_RS09180 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ND012_RS09185 PF00232 Glycosyl hydrolase family 1 ND012_RS09190 PF02378 Phosphotransferase system, EIIC ND012_RS09195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND012_RS09200 PF00849 RNA pseudouridylate synthase ND012_RS09200 PF01479 S4 domain ND012_RS09210 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ND012_RS09215 PF03553 Na+/H+ antiporter family ND012_RS09225 PF13520 Amino acid permease ND012_RS09240 PF00849 RNA pseudouridylate synthase ND012_RS09245 PF00282 Pyridoxal-dependent decarboxylase conserved domain ND012_RS09250 PF13520 Amino acid permease ND012_RS09255 PF04960 Glutaminase ND012_RS09285 PF13673 Acetyltransferase (GNAT) domain ND012_RS09295 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ND012_RS09295 PF00034 Cytochrome c ND012_RS09305 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS09310 PF00005 ABC transporter ND012_RS09320 PF01348 Type II intron maturase ND012_RS09320 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND012_RS09335 PF02796 Helix-turn-helix domain of resolvase ND012_RS09335 PF00239 Resolvase, N terminal domain ND012_RS09340 PF00672 HAMP domain ND012_RS09340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS09340 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS09340 PF00072 Response regulator receiver domain ND012_RS09340 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ND012_RS09340 PF01627 Hpt domain ND012_RS09350 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND012_RS09350 PF01348 Type II intron maturase ND012_RS09365 PF13610 DDE domain ND012_RS09395 PF00574 Clp protease ND012_RS09430 PF01548 Transposase ND012_RS09430 PF02371 Transposase IS116/IS110/IS902 family ND012_RS09435 PF01348 Type II intron maturase ND012_RS09435 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND012_RS09440 PF02203 Tar ligand binding domain homologue ND012_RS09440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_RS09440 PF00672 HAMP domain ND012_RS09445 PF13276 HTH-like domain ND012_RS09445 PF13333 Integrase core domain ND012_RS09445 PF00665 Integrase core domain ND012_RS09495 PF02086 D12 class N6 adenine-specific DNA methyltransferase ND012_RS09500 PF05840 Bacteriophage replication gene A protein (GPA) ND012_RS09505 PF05840 Bacteriophage replication gene A protein (GPA) ND012_RS09565 PF01066 CDP-alcohol phosphatidyltransferase ND012_RS09570 PF01541 GIY-YIG catalytic domain ND012_RS09570 PF02151 UvrB/uvrC motif ND012_RS09570 PF08459 UvrC Helix-hairpin-helix N-terminal ND012_RS09575 PF00196 Bacterial regulatory proteins, luxR family ND012_RS09575 PF00072 Response regulator receiver domain ND012_RS09580 PF10769 Protein of unknown function (DUF2594) ND012_RS09600 PF00324 Amino acid permease ND012_RS09605 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ND012_RS09605 PF01276 Orn/Lys/Arg decarboxylase, major domain ND012_RS09605 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ND012_RS09610 PF13520 Amino acid permease ND012_RS09615 PF00486 Transcriptional regulatory protein, C terminal ND012_RS09615 PF18500 CadC C-terminal domain 1 ND012_RS09620 PF00474 Sodium:solute symporter family ND012_RS09625 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ND012_RS09625 PF14850 DNA-binding domain of Proline dehydrogenase ND012_RS09625 PF01619 Proline dehydrogenase ND012_RS09625 PF00171 Aldehyde dehydrogenase family ND012_RS09630 PF00005 ABC transporter ND012_RS09635 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS09640 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS09645 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS09650 PF02899 Phage integrase, N-terminal SAM-like domain ND012_RS09655 PF04545 Sigma-70, region 4 ND012_RS09655 PF04542 Sigma-70 region 2 ND012_RS09655 PF04539 Sigma-70 region 3 ND012_RS09660 PF00669 Bacterial flagellin N-terminal helical region ND012_RS09660 PF08884 Flagellin D3 domain ND012_RS09660 PF00700 Bacterial flagellin C-terminal helical region ND012_RS09665 PF00700 Bacterial flagellin C-terminal helical region ND012_RS09665 PF08884 Flagellin D3 domain ND012_RS09665 PF00669 Bacterial flagellin N-terminal helical region ND012_RS09670 PF00700 Bacterial flagellin C-terminal helical region ND012_RS09670 PF08884 Flagellin D3 domain ND012_RS09670 PF00669 Bacterial flagellin N-terminal helical region ND012_RS09675 PF02465 Flagellar hook-associated protein 2 N-terminus ND012_RS09675 PF07196 Flagellin hook IN motif ND012_RS09675 PF07195 Flagellar hook-associated protein 2 C-terminus ND012_RS09680 PF02561 Flagellar protein FliS ND012_RS09685 PF05400 Flagellar protein FliT ND012_RS09690 PF12833 Helix-turn-helix domain ND012_RS09695 PF01966 HD domain ND012_RS09700 PF02254 TrkA-N domain ND012_RS09700 PF07885 Ion channel ND012_RS09705 PF01223 DNA/RNA non-specific endonuclease ND012_RS09715 PF02049 Flagellar hook-basal body complex protein FliE ND012_RS09720 PF08345 Flagellar M-ring protein C-terminal ND012_RS09720 PF01514 Secretory protein of YscJ/FliF family ND012_RS09725 PF01706 FliG C-terminal domain ND012_RS09725 PF14841 FliG middle domain ND012_RS09725 PF14842 FliG N-terminal domain ND012_RS09730 PF02108 Flagellar assembly protein FliH ND012_RS09735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND012_RS09735 PF18269 T3SS EscN ATPase C-terminal domain ND012_RS09740 PF02050 Flagellar FliJ protein ND012_RS09745 PF02120 Flagellar hook-length control protein FliK ND012_RS09750 PF03748 Flagellar basal body-associated protein FliL ND012_RS09755 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND012_RS09755 PF02154 Flagellar motor switch protein FliM ND012_RS09760 PF16973 Flagellar motor switch protein FliN N-terminal ND012_RS09760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ND012_RS09765 PF04347 Flagellar biosynthesis protein, FliO ND012_RS09770 PF00813 FliP family ND012_RS09775 PF01313 Bacterial export proteins, family 3 ND012_RS09780 PF01311 Bacterial export proteins, family 1 ND012_RS09785 PF00669 Bacterial flagellin N-terminal helical region ND012_RS09790 PF00460 Flagella basal body rod protein ND012_RS09790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_RS09795 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ND012_RS09795 PF10135 Rod binding protein ND012_RS09800 PF02119 Flagellar P-ring protein ND012_RS09805 PF02107 Flagellar L-ring protein ND012_RS09810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_RS09810 PF00460 Flagella basal body rod protein ND012_RS09815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_RS09815 PF00460 Flagella basal body rod protein ND012_RS09820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_RS09820 PF07559 Flagellar basal body protein FlaE ND012_RS09820 PF00460 Flagella basal body rod protein ND012_RS09825 PF03963 Flagellar hook capping protein - N-terminal region ND012_RS09825 PF13861 FlgD Tudor-like domain ND012_RS09825 PF13860 FlgD Ig-like domain ND012_RS09830 PF00460 Flagella basal body rod protein ND012_RS09830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ND012_RS09835 PF00460 Flagella basal body rod protein ND012_RS09840 PF13144 Chaperone for flagella basal body P-ring formation ND012_RS09840 PF17656 FlgA N-terminal domain ND012_RS09845 PF04316 Anti-sigma-28 factor, FlgM ND012_RS09850 PF05130 FlgN protein ND012_RS09855 PF06366 Flagellar protein FlhE ND012_RS09860 PF00771 FHIPEP family ND012_RS09865 PF01312 FlhB HrpN YscU SpaS Family ND012_RS09870 PF01483 Proprotein convertase P-domain ND012_RS09870 PF00082 Subtilase family ND012_RS09875 PF04344 Chemotaxis phosphatase, CheZ ND012_RS09880 PF00072 Response regulator receiver domain ND012_RS09885 PF01339 CheB methylesterase ND012_RS09885 PF00072 Response regulator receiver domain ND012_RS09890 PF01739 CheR methyltransferase, SAM binding domain ND012_RS09890 PF03705 CheR methyltransferase, all-alpha domain ND012_RS09895 PF02203 Tar ligand binding domain homologue ND012_RS09895 PF00672 HAMP domain ND012_RS09895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_RS09900 PF00672 HAMP domain ND012_RS09900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_RS09900 PF02203 Tar ligand binding domain homologue ND012_RS09905 PF01584 CheW-like domain ND012_RS09910 PF01627 Hpt domain ND012_RS09910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS09910 PF02895 Signal transducing histidine kinase, homodimeric domain ND012_RS09910 PF09078 CheY binding ND012_RS09910 PF01584 CheW-like domain ND012_RS09915 PF00691 OmpA family ND012_RS09915 PF13677 Membrane MotB of proton-channel complex MotA/MotB ND012_RS09920 PF01618 MotA/TolQ/ExbB proton channel family ND012_RS09925 PF05280 Flagellar transcriptional activator (FlhC) ND012_RS09930 PF05247 Flagellar transcriptional activator (FlhD) ND012_RS09935 PF00582 Universal stress protein family ND012_RS09940 PF02308 MgtC family ND012_RS09945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_RS09945 PF00672 HAMP domain ND012_RS09945 PF02203 Tar ligand binding domain homologue ND012_RS09950 PF10781 Dextransucrase DSRB ND012_RS09955 PF00313 'Cold-shock' DNA-binding domain ND012_RS09960 PF00356 Bacterial regulatory proteins, lacI family ND012_RS09965 PF02929 Beta galactosidase small chain ND012_RS09965 PF16353 Domain of unknown function(DUF4981) ND012_RS09965 PF00703 Glycosyl hydrolases family 2 ND012_RS09965 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ND012_RS09965 PF02837 Glycosyl hydrolases family 2, sugar binding domain ND012_RS09970 PF16197 Ketoacyl-synthetase C-terminal extension ND012_RS09970 PF00698 Acyl transferase domain ND012_RS09970 PF02801 Beta-ketoacyl synthase, C-terminal domain ND012_RS09970 PF08659 KR domain ND012_RS09970 PF00550 Phosphopantetheine attachment site ND012_RS09970 PF14765 Polyketide synthase dehydratase ND012_RS09970 PF08240 Alcohol dehydrogenase GroES-like domain ND012_RS09970 PF00109 Beta-ketoacyl synthase, N-terminal domain ND012_RS09970 PF00107 Zinc-binding dehydrogenase ND012_RS09975 PF10777 Inner membrane protein YlaC ND012_RS09985 PF14001 YdfZ protein ND012_RS09995 PF06167 Glucose-regulated metallo-peptidase M90 ND012_RS10015 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ND012_RS10015 PF01648 4'-phosphopantetheinyl transferase superfamily ND012_RS10020 PF00939 Sodium:sulfate symporter transmembrane region ND012_RS10025 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ND012_RS10030 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ND012_RS10035 PF04223 Citrate lyase, alpha subunit (CitF) ND012_RS10040 PF03328 HpcH/HpaI aldolase/citrate lyase family ND012_RS10045 PF06857 Malonate decarboxylase delta subunit (MdcD) ND012_RS10050 PF08218 Citrate lyase ligase C-terminal domain ND012_RS10055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS10055 PF00989 PAS fold ND012_RS10055 PF17203 Single cache domain 3 ND012_RS10055 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ND012_RS10060 PF12431 Transcriptional regulator ND012_RS10060 PF00072 Response regulator receiver domain ND012_RS10065 PF00196 Bacterial regulatory proteins, luxR family ND012_RS10065 PF00072 Response regulator receiver domain ND012_RS10070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS10070 PF07730 Histidine kinase ND012_RS10070 PF05231 MASE1 ND012_RS10075 PF07690 Major Facilitator Superfamily ND012_RS10085 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS10090 PF00005 ABC transporter ND012_RS10090 PF08402 TOBE domain ND012_RS10110 PF04363 Protein of unknown function (DUF496) ND012_RS10115 PF04632 Fusaric acid resistance protein family ND012_RS10125 PF00929 Exonuclease ND012_RS10125 PF08411 Exonuclease C-terminal ND012_RS10130 PF13520 Amino acid permease ND012_RS10135 PF07715 TonB-dependent Receptor Plug Domain ND012_RS10135 PF00593 TonB dependent receptor ND012_RS10140 PF00005 ABC transporter ND012_RS10145 PF01032 FecCD transport family ND012_RS10155 PF00324 Amino acid permease ND012_RS10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS10160 PF03466 LysR substrate binding domain ND012_RS10170 PF03601 Conserved hypothetical protein 698 ND012_RS10175 PF01261 Xylose isomerase-like TIM barrel ND012_RS10180 PF02378 Phosphotransferase system, EIIC ND012_RS10180 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ND012_RS10185 PF00294 pfkB family carbohydrate kinase ND012_RS10190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_RS10190 PF00381 PTS HPr component phosphorylation site ND012_RS10195 PF00293 NUDIX domain ND012_RS10200 PF03264 NapC/NirT cytochrome c family, N-terminal region ND012_RS10205 PF00384 Molybdopterin oxidoreductase ND012_RS10205 PF18364 Molybdopterin oxidoreductase N-terminal domain ND012_RS10205 PF01568 Molydopterin dinucleotide binding domain ND012_RS10210 PF03692 Putative zinc- or iron-chelating domain ND012_RS10215 PF03222 Tryptophan/tyrosine permease family ND012_RS10220 PF01132 Elongation factor P (EF-P) OB domain ND012_RS10220 PF08207 Elongation factor P (EF-P) KOW-like domain ND012_RS10220 PF09285 Elongation factor P, C-terminal ND012_RS10225 PF03786 D-mannonate dehydratase (UxuA) ND012_RS10230 PF08125 Mannitol dehydrogenase C-terminal domain ND012_RS10230 PF01232 Mannitol dehydrogenase Rossmann domain ND012_RS10240 PF02492 CobW/HypB/UreG, nucleotide-binding domain ND012_RS10240 PF07683 Cobalamin synthesis protein cobW C-terminal domain ND012_RS10245 PF01569 PAP2 superfamily ND012_RS10250 PF00877 NlpC/P60 family ND012_RS10255 PF12792 CSS motif domain associated with EAL ND012_RS10255 PF00563 EAL domain ND012_RS10260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ND012_RS10265 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS10270 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS10270 PF12911 N-terminal TM domain of oligopeptide transport permease C ND012_RS10275 PF00005 ABC transporter ND012_RS10275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ND012_RS10280 PF13989 YejG-like protein ND012_RS10285 PF07690 Major Facilitator Superfamily ND012_RS10290 PF00849 RNA pseudouridylate synthase ND012_RS10290 PF01479 S4 domain ND012_RS10295 PF00271 Helicase conserved C-terminal domain ND012_RS10295 PF04851 Type III restriction enzyme, res subunit ND012_RS10300 PF01386 Ribosomal L25p family ND012_RS10305 PF04245 37-kD nucleoid-associated bacterial protein ND012_RS10310 PF07208 Protein of unknown function (DUF1414) ND012_RS10315 PF00884 Sulfatase ND012_RS10315 PF11893 Domain of unknown function (DUF3413) ND012_RS10330 PF02796 Helix-turn-helix domain of resolvase ND012_RS10330 PF00239 Resolvase, N terminal domain ND012_RS10335 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND012_RS10340 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ND012_RS10355 PF04865 Baseplate J-like protein ND012_RS10400 PF04984 Phage tail sheath protein subtilisin-like domain ND012_RS10400 PF17482 Phage tail sheath C-terminal domain ND012_RS10440 PF01343 Peptidase family S49 ND012_RS10490 PF00182 Chitinase class I ND012_RS10515 PF06147 Protein of unknown function (DUF968) ND012_RS10530 PF05869 DNA N-6-adenine-methyltransferase (Dam) ND012_RS10535 PF03354 Phage Terminase ND012_RS10570 PF10065 Uncharacterized conserved protein (DUF2303) ND012_RS10615 PF06183 DinI-like family ND012_RS10620 PF12706 Beta-lactamase superfamily domain ND012_RS10625 PF00144 Beta-lactamase ND012_RS10630 PF13302 Acetyltransferase (GNAT) domain ND012_RS10645 PF00267 Gram-negative porin ND012_RS10650 PF07690 Major Facilitator Superfamily ND012_RS10655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS10655 PF01627 Hpt domain ND012_RS10655 PF16359 RcsD-ABL domain ND012_RS10660 PF00196 Bacterial regulatory proteins, luxR family ND012_RS10660 PF00072 Response regulator receiver domain ND012_RS10665 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS10665 PF09456 RcsC Alpha-Beta-Loop (ABL) ND012_RS10665 PF00072 Response regulator receiver domain ND012_RS10665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS10670 PF03989 DNA gyrase C-terminal domain, beta-propeller ND012_RS10670 PF00521 DNA gyrase/topoisomerase IV, subunit A ND012_RS10680 PF00317 Ribonucleotide reductase, all-alpha domain ND012_RS10680 PF02867 Ribonucleotide reductase, barrel domain ND012_RS10680 PF03477 ATP cone domain ND012_RS10685 PF00268 Ribonucleotide reductase, small chain ND012_RS10690 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_RS10700 PF03974 Ecotin ND012_RS10705 PF00994 Probable molybdopterin binding domain ND012_RS10710 PF04138 GtrA-like protein ND012_RS10715 PF00535 Glycosyl transferase family 2 ND012_RS10725 PF03222 Tryptophan/tyrosine permease family ND012_RS10730 PF07437 YfaZ precursor ND012_RS10735 PF06628 Catalase-related immune-responsive ND012_RS10735 PF00199 Catalase ND012_RS10740 PF00501 AMP-binding enzyme ND012_RS10740 PF13193 AMP-binding enzyme C-terminal domain ND012_RS10745 PF13378 Enolase C-terminal domain-like ND012_RS10750 PF00378 Enoyl-CoA hydratase/isomerase ND012_RS10755 PF12697 Alpha/beta hydrolase family ND012_RS10760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND012_RS10760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_RS10760 PF16582 Middle domain of thiamine pyrophosphate ND012_RS10765 PF00425 chorismate binding enzyme ND012_RS10770 PF05957 Bacterial protein of unknown function (DUF883) ND012_RS10775 PF06496 Protein of unknown function (DUF1097) ND012_RS10780 PF00361 Proton-conducting membrane transporter ND012_RS10785 PF00361 Proton-conducting membrane transporter ND012_RS10790 PF00361 Proton-conducting membrane transporter ND012_RS10790 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ND012_RS10795 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ND012_RS10800 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ND012_RS10805 PF12838 4Fe-4S dicluster domain ND012_RS10810 PF00146 NADH dehydrogenase ND012_RS10815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND012_RS10815 PF00384 Molybdopterin oxidoreductase ND012_RS10815 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ND012_RS10815 PF01568 Molydopterin dinucleotide binding domain ND012_RS10820 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ND012_RS10820 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ND012_RS10820 PF10531 SLBB domain ND012_RS10830 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ND012_RS10830 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ND012_RS10835 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ND012_RS10840 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ND012_RS10845 PF03466 LysR substrate binding domain ND012_RS10845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS10850 PF00155 Aminotransferase class I and II ND012_RS10860 PF02080 TrkA-C domain ND012_RS10860 PF03600 Citrate transporter ND012_RS10870 PF03887 YfbU domain ND012_RS10875 PF04217 Protein of unknown function, DUF412 ND012_RS10880 PF00871 Acetokinase family ND012_RS10885 PF07085 DRTGG domain ND012_RS10885 PF01515 Phosphate acetyl/butaryl transferase ND012_RS10890 PF00356 Bacterial regulatory proteins, lacI family ND012_RS10890 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ND012_RS10895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_RS10905 PF03611 PTS system sugar-specific permease component ND012_RS10910 PF00293 NUDIX domain ND012_RS10915 PF12850 Calcineurin-like phosphoesterase superfamily domain ND012_RS10925 PF00043 Glutathione S-transferase, C-terminal domain ND012_RS10925 PF02798 Glutathione S-transferase, N-terminal domain ND012_RS10930 PF08338 Domain of unknown function (DUF1731) ND012_RS10930 PF01370 NAD dependent epimerase/dehydratase family ND012_RS10935 PF00005 ABC transporter ND012_RS10940 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS10945 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS10950 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS10960 PF02441 Flavoprotein ND012_RS10965 PF00156 Phosphoribosyl transferase domain ND012_RS10970 PF02674 Colicin V production protein ND012_RS10975 PF05036 Sporulation related domain ND012_RS10980 PF02875 Mur ligase family, glutamate ligase domain ND012_RS10980 PF08245 Mur ligase middle domain ND012_RS10985 PF01039 Carboxyl transferase domain ND012_RS10985 PF17848 Acetyl-coA carboxylase zinc finger domain ND012_RS10990 PF09335 SNARE associated Golgi protein ND012_RS10995 PF01416 tRNA pseudouridine synthase ND012_RS11000 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND012_RS11000 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND012_RS11005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND012_RS11005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND012_RS11005 PF11890 Domain of unknown function (DUF3410) ND012_RS11025 PF00155 Aminotransferase class I and II ND012_RS11030 PF00578 AhpC/TSA family ND012_RS11060 PF00109 Beta-ketoacyl synthase, N-terminal domain ND012_RS11060 PF02801 Beta-ketoacyl synthase, C-terminal domain ND012_RS11065 PF01266 FAD dependent oxidoreductase ND012_RS11065 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ND012_RS11070 PF08891 YfcL protein ND012_RS11075 PF04315 Elongation factor P hydroxylase ND012_RS11080 PF01925 Sulfite exporter TauE/SafE ND012_RS11085 PF03411 Penicillin-insensitive murein endopeptidase ND012_RS11090 PF01264 Chorismate synthase ND012_RS11095 PF05175 Methyltransferase small domain ND012_RS11100 PF01713 Smr domain ND012_RS11105 PF00300 Histidine phosphatase superfamily (branch 1) ND012_RS11110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND012_RS11110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND012_RS11110 PF00378 Enoyl-CoA hydratase/isomerase ND012_RS11115 PF02803 Thiolase, C-terminal domain ND012_RS11115 PF00108 Thiolase, N-terminal domain ND012_RS11120 PF04175 Protein of unknown function (DUF406) ND012_RS11125 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ND012_RS11130 PF04333 MlaA lipoprotein ND012_RS11135 PF03918 Cytochrome C biogenesis protein ND012_RS11140 PF03918 Cytochrome C biogenesis protein ND012_RS11145 PF08534 Redoxin ND012_RS11150 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ND012_RS11150 PF01578 Cytochrome C assembly protein ND012_RS11155 PF03100 CcmE ND012_RS11160 PF04995 Heme exporter protein D (CcmD) ND012_RS11165 PF01578 Cytochrome C assembly protein ND012_RS11170 PF03379 CcmB protein ND012_RS11175 PF00005 ABC transporter ND012_RS11190 PF08274 PhnA Zinc-Ribbon ND012_RS11190 PF03831 PhnA domain ND012_RS11195 PF13406 Transglycosylase SLT domain ND012_RS11210 PF01292 Prokaryotic cytochrome b561 ND012_RS11215 PF00155 Aminotransferase class I and II ND012_RS11220 PF07350 Protein of unknown function (DUF1479) ND012_RS11225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS11225 PF06580 Histidine kinase ND012_RS11225 PF07694 5TMR of 5TMR-LYT ND012_RS11230 PF04397 LytTr DNA-binding domain ND012_RS11230 PF00072 Response regulator receiver domain ND012_RS11235 PF07690 Major Facilitator Superfamily ND012_RS11240 PF02685 Glucokinase ND012_RS11250 PF03466 LysR substrate binding domain ND012_RS11250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS11260 PF01566 Natural resistance-associated macrophage protein ND012_RS11265 PF07670 Nucleoside recognition ND012_RS11265 PF01773 Na+ dependent nucleoside transporter N-terminus ND012_RS11265 PF07662 Na+ dependent nucleoside transporter C-terminus ND012_RS11295 PF00749 tRNA synthetases class I (E and Q), catalytic domain ND012_RS11320 PF12843 Putative quorum-sensing-regulated virulence factor ND012_RS11325 PF00533 BRCA1 C Terminus (BRCT) domain ND012_RS11325 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ND012_RS11325 PF12826 Helix-hairpin-helix motif ND012_RS11325 PF01653 NAD-dependent DNA ligase adenylation domain ND012_RS11325 PF03120 NAD-dependent DNA ligase OB-fold domain ND012_RS11330 PF04354 ZipA, C-terminal FtsZ-binding domain ND012_RS11340 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS11345 PF00381 PTS HPr component phosphorylation site ND012_RS11350 PF05524 PEP-utilising enzyme, N-terminal ND012_RS11350 PF02896 PEP-utilising enzyme, TIM barrel domain ND012_RS11350 PF00391 PEP-utilising enzyme, mobile domain ND012_RS11355 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ND012_RS11360 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS11365 PF00005 ABC transporter ND012_RS11370 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS11375 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS11385 PF07690 Major Facilitator Superfamily ND012_RS11390 PF01418 Helix-turn-helix domain, rpiR family ND012_RS11390 PF01380 SIS domain ND012_RS11395 PF04074 YhcH/YjgK/YiaL ND012_RS11400 PF00480 ROK family ND012_RS11405 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ND012_RS11410 PF00701 Dihydrodipicolinate synthetase family ND012_RS11415 PF04261 Dyp-type peroxidase family ND012_RS11420 PF06572 Protein of unknown function (DUF1131) ND012_RS11425 PF04076 Bacterial OB fold (BOF) protein ND012_RS11485 PF00589 Phage integrase family ND012_RS11495 PF00583 Acetyltransferase (GNAT) family ND012_RS11500 PF01218 Coproporphyrinogen III oxidase ND012_RS11505 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ND012_RS11510 PF00390 Malic enzyme, N-terminal domain ND012_RS11510 PF03949 Malic enzyme, NAD binding domain ND012_RS11510 PF01515 Phosphate acetyl/butaryl transferase ND012_RS11515 PF00293 NUDIX domain ND012_RS11520 PF03264 NapC/NirT cytochrome c family, N-terminal region ND012_RS11525 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ND012_RS11530 PF01568 Molydopterin dinucleotide binding domain ND012_RS11530 PF00384 Molybdopterin oxidoreductase ND012_RS11530 PF10518 TAT (twin-arginine translocation) pathway signal sequence ND012_RS11530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ND012_RS11535 PF03927 NapD protein ND012_RS11540 PF00037 4Fe-4S binding domain ND012_RS11540 PF12800 4Fe-4S binding domain ND012_RS11540 PF13187 4Fe-4S dicluster domain ND012_RS11545 PF00196 Bacterial regulatory proteins, luxR family ND012_RS11545 PF00072 Response regulator receiver domain ND012_RS11555 PF00873 AcrB/AcrD/AcrF family ND012_RS11565 PF01817 Chorismate mutase type II ND012_RS11570 PF03960 ArsC family ND012_RS11575 PF07687 Peptidase dimerisation domain ND012_RS11575 PF01546 Peptidase family M20/M25/M40 ND012_RS11580 PF02557 D-alanyl-D-alanine carboxypeptidase ND012_RS11585 PF13980 Uncharacterised protein family (UPF0370) ND012_RS11590 PF02230 Phospholipase/Carboxylesterase ND012_RS11595 PF08351 Domain of unknown function (DUF1726) ND012_RS11595 PF13718 GNAT acetyltransferase 2 ND012_RS11595 PF05127 Helicase ND012_RS11595 PF17176 tRNA-binding domain ND012_RS11600 PF04284 Protein of unknown function (DUF441) ND012_RS11605 PF01259 SAICAR synthetase ND012_RS11610 PF06804 NlpB/DapX lipoprotein ND012_RS11615 PF00701 Dihydrodipicolinate synthetase family ND012_RS11620 PF01842 ACT domain ND012_RS11625 PF00578 AhpC/TSA family ND012_RS11630 PF01594 AI-2E family transporter ND012_RS11635 PF01435 Peptidase family M48 ND012_RS11635 PF07720 Tetratricopeptide repeat ND012_RS11640 PF03960 ArsC family ND012_RS11645 PF00308 Bacterial dnaA protein ND012_RS11650 PF00860 Permease family ND012_RS11660 PF00586 AIR synthase related protein, N-terminal domain ND012_RS11660 PF02769 AIR synthase related protein, C-terminal domain ND012_RS11665 PF00551 Formyl transferase ND012_RS11670 PF13302 Acetyltransferase (GNAT) domain ND012_RS11675 PF00005 ABC transporter ND012_RS11680 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS11685 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS11690 PF02503 Polyphosphate kinase middle domain ND012_RS11690 PF13090 Polyphosphate kinase C-terminal domain 2 ND012_RS11690 PF17941 Polyphosphate kinase C-terminal domain 1 ND012_RS11690 PF13089 Polyphosphate kinase N-terminal domain ND012_RS11695 PF02541 Ppx/GppA phosphatase family ND012_RS11705 PF01769 Divalent cation transporter ND012_RS11705 PF00571 CBS domain ND012_RS11705 PF03448 MgtE intracellular N domain ND012_RS11710 PF00012 Hsp70 protein ND012_RS11720 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_RS11720 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_RS11725 PF13953 PapC C-terminal domain ND012_RS11725 PF13954 PapC N-terminal domain ND012_RS11725 PF00577 Outer membrane usher protein ND012_RS11740 PF13533 Biotin-lipoyl like ND012_RS11745 PF00873 AcrB/AcrD/AcrF family ND012_RS11750 PF00873 AcrB/AcrD/AcrF family ND012_RS11755 PF07690 Major Facilitator Superfamily ND012_RS11760 PF00672 HAMP domain ND012_RS11760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS11760 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS11765 PF00072 Response regulator receiver domain ND012_RS11765 PF00486 Transcriptional regulatory protein, C terminal ND012_RS11770 PF07411 Domain of unknown function (DUF1508) ND012_RS11775 PF01136 Peptidase family U32 ND012_RS11775 PF16325 Peptidase family U32 C-terminal domain ND012_RS11780 PF00781 Diacylglycerol kinase catalytic domain ND012_RS11795 PF08543 Phosphomethylpyrimidine kinase ND012_RS11815 PF00117 Glutamine amidotransferase class-I ND012_RS11815 PF00958 GMP synthase C terminal domain ND012_RS11815 PF02540 NAD synthase ND012_RS11820 PF00571 CBS domain ND012_RS11820 PF00478 IMP dehydrogenase / GMP reductase domain ND012_RS11825 PF02601 Exonuclease VII, large subunit ND012_RS11825 PF13742 OB-fold nucleic acid binding domain ND012_RS11830 PF07191 zinc-ribbons ND012_RS11835 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ND012_RS11835 PF01926 50S ribosome-binding GTPase ND012_RS11840 PF13360 PQQ-like domain ND012_RS11845 PF09976 Tetratricopeptide repeat-like domain ND012_RS11850 PF03129 Anticodon binding domain ND012_RS11850 PF13393 Histidyl-tRNA synthetase ND012_RS11855 PF04551 GcpE protein ND012_RS11860 PF13464 Domain of unknown function (DUF4115) ND012_RS11870 PF04055 Radical SAM superfamily ND012_RS11875 PF00334 Nucleoside diphosphate kinase ND012_RS11885 PF00905 Penicillin binding protein transpeptidase domain ND012_RS11885 PF00912 Transglycosylase ND012_RS11885 PF06832 Penicillin-Binding Protein C-terminus Family ND012_RS11890 PF07678 A-macroglobulin TED domain ND012_RS11890 PF01835 MG2 domain ND012_RS11890 PF17962 Bacterial macroglobulin domain 6 ND012_RS11890 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ND012_RS11890 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ND012_RS11890 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ND012_RS11890 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain ND012_RS11890 PF07703 Alpha-2-macroglobulin bait region domain ND012_RS11890 PF00207 Alpha-2-macroglobulin family ND012_RS11895 PF14581 SseB protein C-terminal domain ND012_RS11895 PF07179 SseB protein N-terminal domain ND012_RS11900 PF12404 Peptidase ND012_RS11900 PF00883 Cytosol aminopeptidase family, catalytic domain ND012_RS11905 PF04384 Iron-sulphur cluster assembly ND012_RS11910 PF00111 2Fe-2S iron-sulfur cluster binding domain ND012_RS11915 PF00012 Hsp70 protein ND012_RS11920 PF00226 DnaJ domain ND012_RS11920 PF07743 HSCB C-terminal oligomerisation domain ND012_RS11925 PF01521 Iron-sulphur cluster biosynthesis ND012_RS11930 PF01592 NifU-like N terminal domain ND012_RS11935 PF00266 Aminotransferase class-V ND012_RS11940 PF02082 Transcriptional regulator ND012_RS11945 PF00588 SpoU rRNA Methylase family ND012_RS11950 PF00459 Inositol monophosphatase family ND012_RS11955 PF03824 High-affinity nickel-transport protein ND012_RS11960 PF06226 Protein of unknown function (DUF1007) ND012_RS11965 PF00874 PRD domain ND012_RS11970 PF12832 MFS_1 like family ND012_RS11975 PF00464 Serine hydroxymethyltransferase ND012_RS11980 PF00042 Globin ND012_RS11980 PF00970 Oxidoreductase FAD-binding domain ND012_RS11980 PF00175 Oxidoreductase NAD-binding domain ND012_RS11985 PF14502 Helix-turn-helix domain ND012_RS11985 PF14503 YhfZ C-terminal domain ND012_RS11995 PF01168 Alanine racemase, N-terminal domain ND012_RS12000 PF02126 Phosphotriesterase family ND012_RS12005 PF10941 Protein of unknown function DUF2620 ND012_RS12010 PF10797 Protein of unknown function ND012_RS12015 PF00543 Nitrogen regulatory protein P-II ND012_RS12020 PF00795 Carbon-nitrogen hydrolase ND012_RS12020 PF02540 NAD synthase ND012_RS12025 PF00072 Response regulator receiver domain ND012_RS12025 PF00158 Sigma-54 interaction domain ND012_RS12030 PF13942 YfhG lipoprotein ND012_RS12035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS12035 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS12045 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ND012_RS12045 PF02769 AIR synthase related protein, C-terminal domain ND012_RS12045 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ND012_RS12050 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS12050 PF01464 Transglycosylase SLT domain ND012_RS12055 PF14437 MafB19-like deaminase ND012_RS12065 PF00367 phosphotransferase system, EIIB ND012_RS12065 PF02378 Phosphotransferase system, EIIC ND012_RS12070 PF01380 SIS domain ND012_RS12075 PF01380 SIS domain ND012_RS12075 PF01418 Helix-turn-helix domain, rpiR family ND012_RS12080 PF12838 4Fe-4S dicluster domain ND012_RS12085 PF01648 4'-phosphopantetheinyl transferase superfamily ND012_RS12090 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ND012_RS12095 PF11967 Recombination protein O N terminal ND012_RS12095 PF02565 Recombination protein O C terminal ND012_RS12100 PF07650 KH domain ND012_RS12100 PF01926 50S ribosome-binding GTPase ND012_RS12105 PF14622 Ribonuclease-III-like ND012_RS12105 PF00035 Double-stranded RNA binding motif ND012_RS12110 PF10502 Signal peptidase, peptidase S26 ND012_RS12115 PF03144 Elongation factor Tu domain 2 ND012_RS12115 PF00679 Elongation factor G C-terminus ND012_RS12115 PF06421 GTP-binding protein LepA C-terminus ND012_RS12115 PF00009 Elongation factor Tu GTP binding domain ND012_RS12125 PF03888 MucB/RseB N-terminal domain ND012_RS12125 PF17188 MucB/RseB C-terminal domain ND012_RS12130 PF03873 Anti sigma-E protein RseA, C-terminal domain ND012_RS12130 PF03872 Anti sigma-E protein RseA, N-terminal domain ND012_RS12135 PF04542 Sigma-70 region 2 ND012_RS12135 PF08281 Sigma-70, region 4 ND012_RS12140 PF00890 FAD binding domain ND012_RS12140 PF02910 Fumarate reductase flavoprotein C-term ND012_RS12145 PF05175 Methyltransferase small domain ND012_RS12150 PF00270 DEAD/DEAH box helicase ND012_RS12150 PF00271 Helicase conserved C-terminal domain ND012_RS12155 PF12796 Ankyrin repeats (3 copies) ND012_RS12165 PF01228 Glycine radical ND012_RS12170 PF03167 Uracil DNA glycosylase superfamily ND012_RS12175 PF01025 GrpE ND012_RS12180 PF01513 ATP-NAD kinase ND012_RS12185 PF02463 RecF/RecN/SMC N terminal domain ND012_RS12190 PF04355 SmpA / OmlA family ND012_RS12195 PF03658 RnfH family Ubiquitin ND012_RS12200 PF03364 Polyketide cyclase / dehydrase and lipid transport ND012_RS12205 PF01668 SmpB protein ND012_RS12215 PF13356 Arm DNA-binding domain ND012_RS12215 PF00589 Phage integrase family ND012_RS12330 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_RS12330 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_RS12335 PF00577 Outer membrane usher protein ND012_RS12335 PF13954 PapC N-terminal domain ND012_RS12335 PF13953 PapC C-terminal domain ND012_RS12350 PF00239 Resolvase, N terminal domain ND012_RS12350 PF02796 Helix-turn-helix domain of resolvase ND012_RS12370 PF01527 Transposase ND012_RS12380 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND012_RS12380 PF18413 Neuraminidase-like domain ND012_RS12380 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain ND012_RS12380 PF18413 Neuraminidase-like domain ND012_RS12390 PF12256 Insecticide toxin TcdB middle/N-terminal region ND012_RS12390 PF03534 Salmonella virulence plasmid 65kDa B protein ND012_RS12390 PF12255 Insecticide toxin TcdB middle/C-terminal region ND012_RS12395 PF14431 YwqJ-like deaminase ND012_RS12395 PF18807 Tripartite Tc toxins repeat ND012_RS12425 PF01380 SIS domain ND012_RS12425 PF00571 CBS domain ND012_RS12430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND012_RS12430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND012_RS12440 PF02653 Branched-chain amino acid transport system / permease component ND012_RS12445 PF00005 ABC transporter ND012_RS12455 PF00561 alpha/beta hydrolase fold ND012_RS12460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS12460 PF03466 LysR substrate binding domain ND012_RS12465 PF02652 L-lactate permease ND012_RS12470 PF01070 FMN-dependent dehydrogenase ND012_RS12475 PF06039 Malate:quinone oxidoreductase (Mqo) ND012_RS12480 PF00313 'Cold-shock' DNA-binding domain ND012_RS12490 PF06711 Protein of unknown function (DUF1198) ND012_RS12495 PF09400 Protein of unknown function (DUF2002) ND012_RS12510 PF07972 NrdI Flavodoxin like ND012_RS12515 PF02867 Ribonucleotide reductase, barrel domain ND012_RS12515 PF08343 Ribonucleotide reductase N-terminal ND012_RS12515 PF00317 Ribonucleotide reductase, all-alpha domain ND012_RS12520 PF00268 Ribonucleotide reductase, small chain ND012_RS12525 PF00571 CBS domain ND012_RS12525 PF00005 ABC transporter ND012_RS12530 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS12535 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ND012_RS12540 PF07690 Major Facilitator Superfamily ND012_RS12545 PF01047 MarR family ND012_RS12555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ND012_RS12555 PF00529 HlyD membrane-fusion protein of T1SS ND012_RS12560 PF07690 Major Facilitator Superfamily ND012_RS12565 PF08032 RNA 2'-O ribose methyltransferase substrate binding ND012_RS12565 PF00588 SpoU rRNA Methylase family ND012_RS12570 PF00085 Thioredoxin ND012_RS12575 PF03942 DTW domain ND012_RS12580 PF13607 Succinyl-CoA ligase like flavodoxin domain ND012_RS12580 PF13380 CoA binding domain ND012_RS12580 PF00583 Acetyltransferase (GNAT) family ND012_RS12585 PF13091 PLD-like domain ND012_RS12590 PF10043 Predicted periplasmic lipoprotein (DUF2279) ND012_RS12620 PF00005 ABC transporter ND012_RS12620 PF09383 NIL domain ND012_RS12625 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS12630 PF03180 NLPA lipoprotein ND012_RS12635 PF16358 RcsF lipoprotein ND012_RS12640 PF01980 tRNA-methyltransferase O ND012_RS12640 PF18389 TrmO C-terminal domain ND012_RS12645 PF03129 Anticodon binding domain ND012_RS12645 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ND012_RS12645 PF04073 Aminoacyl-tRNA editing domain ND012_RS12650 PF04170 NlpE N-terminal domain ND012_RS12650 PF17185 NlpE C-terminal OB domain ND012_RS12655 PF00472 RF-1 domain ND012_RS12660 PF07152 YaeQ protein ND012_RS12665 PF06786 Uncharacterised protein family (UPF0253) ND012_RS12670 PF07073 Modulator of Rho-dependent transcription termination (ROF) ND012_RS12675 PF00034 Cytochrome c ND012_RS12680 PF09179 TilS substrate binding domain ND012_RS12680 PF11734 TilS substrate C-terminal domain ND012_RS12680 PF01171 PP-loop family ND012_RS12685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ND012_RS12700 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ND012_RS12705 PF07733 Bacterial DNA polymerase III alpha NTPase domain ND012_RS12705 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ND012_RS12705 PF14579 Helix-hairpin-helix motif ND012_RS12705 PF02811 PHP domain ND012_RS12705 PF01336 OB-fold nucleic acid binding domain ND012_RS12710 PF01351 Ribonuclease HII ND012_RS12715 PF02684 Lipid-A-disaccharide synthetase ND012_RS12720 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_RS12720 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ND012_RS12725 PF07977 FabA-like domain ND012_RS12730 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_RS12730 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ND012_RS12735 PF03938 Outer membrane protein (OmpH-like) ND012_RS12740 PF01103 Surface antigen ND012_RS12740 PF07244 Surface antigen variable number repeat ND012_RS12745 PF17820 PDZ domain ND012_RS12745 PF02163 Peptidase family M50 ND012_RS12755 PF01255 Putative undecaprenyl diphosphate synthase ND012_RS12760 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ND012_RS12760 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ND012_RS12760 PF13288 DXP reductoisomerase C-terminal domain ND012_RS12765 PF01765 Ribosome recycling factor ND012_RS12770 PF00696 Amino acid kinase family ND012_RS12775 PF00889 Elongation factor TS ND012_RS12780 PF00318 Ribosomal protein S2 ND012_RS12790 PF00557 Metallopeptidase family M24 ND012_RS12795 PF08335 GlnD PII-uridylyltransferase ND012_RS12795 PF01842 ACT domain ND012_RS12795 PF01909 Nucleotidyltransferase domain ND012_RS12795 PF01966 HD domain ND012_RS12800 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_RS12800 PF14602 Hexapeptide repeat of succinyl-transferase ND012_RS12800 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ND012_RS12805 PF11944 Protein of unknown function (DUF3461) ND012_RS12810 PF00258 Flavodoxin ND012_RS12815 PF00849 RNA pseudouridylate synthase ND012_RS12820 PF04287 tRNA pseudouridine synthase C ND012_RS12825 PF07348 Syd protein (SUKH-2) ND012_RS12830 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ND012_RS12830 PF14489 QueF-like protein ND012_RS12835 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ND012_RS12835 PF03641 Possible lysine decarboxylase ND012_RS12835 PF11892 Domain of unknown function (DUF3412) ND012_RS12840 PF01367 5'-3' exonuclease, C-terminal SAM fold ND012_RS12840 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND012_RS12845 PF01728 FtsJ-like methyltransferase ND012_RS12845 PF18125 RlmM ferredoxin-like domain ND012_RS12850 PF04241 Protein of unknown function (DUF423) ND012_RS12855 PF03466 LysR substrate binding domain ND012_RS12855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS12860 PF06004 Bacterial protein of unknown function (DUF903) ND012_RS12865 PF00266 Aminotransferase class-V ND012_RS12870 PF02657 Fe-S metabolism associated domain ND012_RS12875 PF00899 ThiF family ND012_RS12880 PF03562 MltA specific insert domain ND012_RS12880 PF06725 3D domain ND012_RS12900 PF11741 AMIN domain ND012_RS12900 PF01520 N-acetylmuramoyl-L-alanine amidase ND012_RS12905 PF00696 Amino acid kinase family ND012_RS12905 PF00583 Acetyltransferase (GNAT) family ND012_RS12910 PF13538 UvrD-like helicase C-terminal domain ND012_RS12915 PF13361 UvrD-like helicase C-terminal domain ND012_RS12915 PF00580 UvrD/REP helicase N-terminal domain ND012_RS12915 PF12705 PD-(D/E)XK nuclease superfamily ND012_RS12920 PF00675 Insulinase (Peptidase family M16) ND012_RS12920 PF05193 Peptidase M16 inactive domain ND012_RS12920 PF16187 Middle or third domain of peptidase_M16 ND012_RS12925 PF17946 RecC C-terminal domain ND012_RS12930 PF12528 Type II secretion prepilin peptidase dependent protein C ND012_RS12930 PF07963 Prokaryotic N-terminal methylation motif ND012_RS12945 PF07963 Prokaryotic N-terminal methylation motif ND012_RS12945 PF00114 Pilin (bacterial filament) ND012_RS12950 PF00303 Thymidylate synthase ND012_RS12955 PF01790 Prolipoprotein diacylglyceryl transferase ND012_RS12960 PF00391 PEP-utilising enzyme, mobile domain ND012_RS12960 PF02896 PEP-utilising enzyme, TIM barrel domain ND012_RS12960 PF01590 GAF domain ND012_RS12960 PF05524 PEP-utilising enzyme, N-terminal ND012_RS12965 PF00293 NUDIX domain ND012_RS12970 PF02976 DNA mismatch repair enzyme MutH ND012_RS12975 PF03741 Integral membrane protein TerC family ND012_RS12980 PF00248 Aldo/keto reductase family ND012_RS12985 PF07690 Major Facilitator Superfamily ND012_RS12990 PF01553 Acyltransferase ND012_RS12990 PF00501 AMP-binding enzyme ND012_RS12990 PF13193 AMP-binding enzyme C-terminal domain ND012_RS13000 PF00356 Bacterial regulatory proteins, lacI family ND012_RS13005 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ND012_RS13005 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND012_RS13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS13010 PF03466 LysR substrate binding domain ND012_RS13015 PF03466 LysR substrate binding domain ND012_RS13015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS13055 PF07963 Prokaryotic N-terminal methylation motif ND012_RS13055 PF11612 Type II secretion system (T2SS), protein J ND012_RS13060 PF07963 Prokaryotic N-terminal methylation motif ND012_RS13060 PF02501 Type II secretion system (T2SS), protein I ND012_RS13070 PF07963 Prokaryotic N-terminal methylation motif ND012_RS13070 PF08334 Type II secretion system (T2SS), protein G ND012_RS13075 PF00482 Type II secretion system (T2SS), protein F ND012_RS13080 PF00437 Type II/IV secretion system protein ND012_RS13085 PF03958 Bacterial type II/III secretion system short domain ND012_RS13085 PF00263 Bacterial type II and III secretion system protein ND012_RS13110 PF00005 ABC transporter ND012_RS13115 PF02405 Permease MlaE ND012_RS13125 PF00152 tRNA synthetases class II (D, K and N) ND012_RS13125 PF01336 OB-fold nucleic acid binding domain ND012_RS13135 PF01368 DHH family ND012_RS13135 PF02272 DHHA1 domain ND012_RS13135 PF17768 RecJ OB domain ND012_RS13140 PF10411 Disulfide bond isomerase protein N-terminus ND012_RS13140 PF13098 Thioredoxin-like domain ND012_RS13145 PF00589 Phage integrase family ND012_RS13145 PF02899 Phage integrase, N-terminal SAM-like domain ND012_RS13150 PF00258 Flavodoxin ND012_RS13155 PF07254 Membrane-bound toxin component of toxin-antitoxin system ND012_RS13160 PF03937 Flavinator of succinate dehydrogenase ND012_RS13165 PF01571 Aminomethyltransferase folate-binding domain ND012_RS13170 PF03006 Haemolysin-III related ND012_RS13180 PF02347 Glycine cleavage system P-protein ND012_RS13185 PF01597 Glycine cleavage H-protein ND012_RS13190 PF08669 Glycine cleavage T-protein C-terminal barrel domain ND012_RS13190 PF01571 Aminomethyltransferase folate-binding domain ND012_RS13195 PF01494 FAD binding domain ND012_RS13200 PF01494 FAD binding domain ND012_RS13205 PF00557 Metallopeptidase family M24 ND012_RS13205 PF05195 Aminopeptidase P, N-terminal domain ND012_RS13210 PF03695 Uncharacterised protein family (UPF0149) ND012_RS13215 PF05164 Cell division protein ZapA ND012_RS13225 PF01812 5-formyltetrahydrofolate cyclo-ligase family ND012_RS13230 PF01842 ACT domain ND012_RS13230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ND012_RS13230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ND012_RS13235 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ND012_RS13240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS13240 PF03466 LysR substrate binding domain ND012_RS13245 PF04402 Protein of unknown function (DUF541) ND012_RS13250 PF01810 LysE type translocator ND012_RS13255 PF00924 Mechanosensitive ion channel ND012_RS13255 PF05552 Conserved TM helix ND012_RS13260 PF01116 Fructose-bisphosphate aldolase class-II ND012_RS13265 PF00162 Phosphoglycerate kinase ND012_RS13270 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ND012_RS13270 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ND012_RS13275 PF02779 Transketolase, pyrimidine binding domain ND012_RS13275 PF02780 Transketolase, C-terminal domain ND012_RS13275 PF00456 Transketolase, thiamine diphosphate binding domain ND012_RS13285 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ND012_RS13285 PF17944 Arginine decarboxylase C-terminal helical extension ND012_RS13285 PF17810 Arginine decarboxylase helical bundle domain ND012_RS13290 PF02773 S-adenosylmethionine synthetase, C-terminal domain ND012_RS13290 PF02772 S-adenosylmethionine synthetase, central domain ND012_RS13290 PF00438 S-adenosylmethionine synthetase, N-terminal domain ND012_RS13300 PF04143 Sulphur transport ND012_RS13310 PF10263 SprT-like family ND012_RS13310 PF17283 SprT-like zinc ribbon domain ND012_RS13315 PF04231 Endonuclease I ND012_RS13320 PF04452 RNA methyltransferase ND012_RS13325 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ND012_RS13325 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ND012_RS13330 PF02622 Uncharacterized ACR, COG1678 ND012_RS13335 PF03652 Holliday junction resolvase ND012_RS13340 PF00795 Carbon-nitrogen hydrolase ND012_RS13345 PF04371 Porphyromonas-type peptidyl-arginine deiminase ND012_RS13350 PF00437 Type II/IV secretion system protein ND012_RS13355 PF01168 Alanine racemase, N-terminal domain ND012_RS13360 PF03807 NADP oxidoreductase coenzyme F420-dependent ND012_RS13360 PF14748 Pyrroline-5-carboxylate reductase dimerisation ND012_RS13365 PF02325 YGGT family ND012_RS13370 PF02594 Uncharacterised ACR, YggU family COG1872 ND012_RS13375 PF01725 Ham1 family ND012_RS13380 PF04055 Radical SAM superfamily ND012_RS13380 PF06969 HemN C-terminal domain ND012_RS13385 PF11101 Protein of unknown function (DUF2884) ND012_RS13390 PF04960 Glutaminase ND012_RS13395 PF04320 Protein with unknown function (DUF469) ND012_RS13400 PF02390 Putative methyltransferase ND012_RS13405 PF10576 Iron-sulfur binding domain of endonuclease III ND012_RS13405 PF00633 Helix-hairpin-helix motif ND012_RS13405 PF00730 HhH-GPD superfamily base excision DNA repair protein ND012_RS13405 PF14815 NUDIX domain ND012_RS13410 PF04362 Bacterial Fe(2+) trafficking ND012_RS13415 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ND012_RS13415 PF01464 Transglycosylase SLT domain ND012_RS13450 PF00294 pfkB family carbohydrate kinase ND012_RS13455 PF01228 Glycine radical ND012_RS13455 PF02901 Pyruvate formate lyase-like ND012_RS13460 PF00871 Acetokinase family ND012_RS13465 PF01490 Transmembrane amino acid transporter protein ND012_RS13470 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS13475 PF00501 AMP-binding enzyme ND012_RS13475 PF00668 Condensation domain ND012_RS13475 PF00550 Phosphopantetheine attachment site ND012_RS13475 PF00975 Thioesterase domain ND012_RS13475 PF13193 AMP-binding enzyme C-terminal domain ND012_RS13485 PF00857 Isochorismatase family ND012_RS13485 PF00550 Phosphopantetheine attachment site ND012_RS13490 PF00501 AMP-binding enzyme ND012_RS13490 PF13193 AMP-binding enzyme C-terminal domain ND012_RS13495 PF00425 chorismate binding enzyme ND012_RS13500 PF01497 Periplasmic binding protein ND012_RS13505 PF05977 Transmembrane secretion effector ND012_RS13510 PF01032 FecCD transport family ND012_RS13515 PF01032 FecCD transport family ND012_RS13520 PF00005 ABC transporter ND012_RS13530 PF00668 Condensation domain ND012_RS13530 PF00975 Thioesterase domain ND012_RS13530 PF00550 Phosphopantetheine attachment site ND012_RS13530 PF13193 AMP-binding enzyme C-terminal domain ND012_RS13530 PF00501 AMP-binding enzyme ND012_RS13535 PF03621 MbtH-like protein ND012_RS13540 PF00756 Putative esterase ND012_RS13540 PF11806 Domain of unknown function (DUF3327) ND012_RS13545 PF07715 TonB-dependent Receptor Plug Domain ND012_RS13545 PF00593 TonB dependent receptor ND012_RS13550 PF08501 Shikimate dehydrogenase substrate binding domain ND012_RS13575 PF13629 Pilus formation protein N terminal region ND012_RS13575 PF00263 Bacterial type II and III secretion system protein ND012_RS13575 PF04972 BON domain ND012_RS13590 PF00437 Type II/IV secretion system protein ND012_RS13625 PF02472 Biopolymer transport protein ExbD/TolR ND012_RS13630 PF01618 MotA/TolQ/ExbB proton channel family ND012_RS13635 PF01053 Cys/Met metabolism PLP-dependent enzyme ND012_RS13640 PF09335 SNARE associated Golgi protein ND012_RS13645 PF06719 AraC-type transcriptional regulator N-terminus ND012_RS13645 PF12833 Helix-turn-helix domain ND012_RS13650 PF00465 Iron-containing alcohol dehydrogenase ND012_RS13655 PF00248 Aldo/keto reductase family ND012_RS13660 PF04055 Radical SAM superfamily ND012_RS13660 PF08497 Radical SAM N-terminal ND012_RS13660 PF11842 Domain of unknown function (DUF3362) ND012_RS13665 PF07731 Multicopper oxidase ND012_RS13665 PF07732 Multicopper oxidase ND012_RS13670 PF01553 Acyltransferase ND012_RS13675 PF03989 DNA gyrase C-terminal domain, beta-propeller ND012_RS13675 PF00521 DNA gyrase/topoisomerase IV, subunit A ND012_RS13680 PF02525 Flavodoxin-like fold ND012_RS13685 PF03466 LysR substrate binding domain ND012_RS13685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS13690 PF00204 DNA gyrase B ND012_RS13690 PF01751 Toprim domain ND012_RS13690 PF00986 DNA gyrase B subunit, carboxyl terminus ND012_RS13690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS13695 PF05728 Uncharacterised protein family (UPF0227) ND012_RS13700 PF00149 Calcineurin-like phosphoesterase ND012_RS13705 PF06853 Protein of unknown function (DUF1249) ND012_RS13710 PF00293 NUDIX domain ND012_RS13715 PF02321 Outer membrane efflux protein ND012_RS13720 PF06693 Protein of unknown function (DUF1190) ND012_RS13725 PF03738 Glutathionylspermidine synthase preATP-grasp ND012_RS13730 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ND012_RS13735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ND012_RS13740 PF04380 Membrane fusogenic activity ND012_RS13750 PF01467 Cytidylyltransferase-like ND012_RS13750 PF00294 pfkB family carbohydrate kinase ND012_RS13755 PF03710 Glutamate-ammonia ligase adenylyltransferase ND012_RS13755 PF08335 GlnD PII-uridylyltransferase ND012_RS13760 PF01928 CYTH domain ND012_RS13765 PF08239 Bacterial SH3 domain ND012_RS13770 PF01966 HD domain ND012_RS13770 PF12627 Probable RNA and SrmB- binding site of polymerase A ND012_RS13770 PF01743 Poly A polymerase head domain ND012_RS13775 PF02673 Bacitracin resistance protein BacA ND012_RS13780 PF02152 Dihydroneopterin aldolase ND012_RS13785 PF02660 Glycerol-3-phosphate acyltransferase ND012_RS13790 PF00814 Glycoprotease family ND012_RS13795 PF01165 Ribosomal protein S21 ND012_RS13800 PF08275 DNA primase catalytic core, N-terminal domain ND012_RS13800 PF01807 CHC2 zinc finger ND012_RS13800 PF08278 DNA primase DnaG DnaB-binding ND012_RS13800 PF10410 DnaB-helicase binding domain of primase ND012_RS13805 PF03979 Sigma-70 factor, region 1.1 ND012_RS13805 PF00140 Sigma-70 factor, region 1.2 ND012_RS13805 PF04542 Sigma-70 region 2 ND012_RS13805 PF04539 Sigma-70 region 3 ND012_RS13805 PF04545 Sigma-70, region 4 ND012_RS13805 PF04546 Sigma-70, non-essential region ND012_RS13820 PF06755 CbtA_toxin of type IV toxin-antitoxin system ND012_RS13825 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A ND012_RS13830 PF04002 RadC-like JAB domain ND012_RS13840 PF01348 Type II intron maturase ND012_RS13840 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ND012_RS13865 PF08220 DeoR-like helix-turn-helix domain ND012_RS13865 PF13280 WYL domain ND012_RS13870 PF01926 50S ribosome-binding GTPase ND012_RS13940 PF00106 short chain dehydrogenase ND012_RS13965 PF08241 Methyltransferase domain ND012_RS13970 PF00535 Glycosyl transferase family 2 ND012_RS13985 PF04829 Pre-toxin domain with VENN motif ND012_RS13985 PF05860 haemagglutination activity domain ND012_RS13985 PF13332 Hemagglutinin repeat ND012_RS13985 PF13018 Extended Signal Peptide of Type V secretion system ND012_RS13990 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND012_RS13990 PF17287 POTRA domain ND012_RS13990 PF08479 POTRA domain, ShlB-type ND012_RS13995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ND012_RS13995 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS14000 PF05175 Methyltransferase small domain ND012_RS14010 PF01863 Protein of unknown function DUF45 ND012_RS14015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ND012_RS14020 PF03741 Integral membrane protein TerC family ND012_RS14025 PF00375 Sodium:dicarboxylate symporter family ND012_RS14030 PF10688 Bacterial inner membrane protein ND012_RS14035 PF08666 SAF domain ND012_RS14035 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ND012_RS14040 PF08125 Mannitol dehydrogenase C-terminal domain ND012_RS14040 PF01232 Mannitol dehydrogenase Rossmann domain ND012_RS14045 PF02614 Glucuronate isomerase ND012_RS14050 PF07690 Major Facilitator Superfamily ND012_RS14055 PF07729 FCD domain ND012_RS14055 PF00392 Bacterial regulatory proteins, gntR family ND012_RS14065 PF09335 SNARE associated Golgi protein ND012_RS14070 PF13721 SecD export protein N-terminal TM region ND012_RS14080 PF05957 Bacterial protein of unknown function (DUF883) ND012_RS14085 PF07332 Putative Actinobacterial Holin-X, holin superfamily III ND012_RS14090 PF13997 YqjK-like protein ND012_RS14095 PF07681 DoxX ND012_RS14100 PF03466 LysR substrate binding domain ND012_RS14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS14105 PF02678 Pirin ND012_RS14105 PF17954 Quercetinase C-terminal cupin domain ND012_RS14120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ND012_RS14125 PF04348 LppC putative lipoprotein ND012_RS14130 PF02021 Uncharacterised protein family UPF0102 ND012_RS14135 PF13580 SIS domain ND012_RS14140 PF04972 BON domain ND012_RS14145 PF00912 Transglycosylase ND012_RS14155 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS14155 PF01627 Hpt domain ND012_RS14155 PF00989 PAS fold ND012_RS14155 PF00072 Response regulator receiver domain ND012_RS14155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS14155 PF18415 Histidine kinase receptor ArcB trans-membrane domain ND012_RS14160 PF04055 Radical SAM superfamily ND012_RS14160 PF16199 Radical_SAM C-terminal domain ND012_RS14165 PF04898 Glutamate synthase central domain ND012_RS14165 PF01645 Conserved region in glutamate synthase ND012_RS14165 PF01493 GXGXG motif ND012_RS14165 PF00310 Glutamine amidotransferases class-II ND012_RS14170 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS14170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ND012_RS14180 PF04386 Stringent starvation protein B ND012_RS14185 PF00043 Glutathione S-transferase, C-terminal domain ND012_RS14185 PF02798 Glutathione S-transferase, N-terminal domain ND012_RS14190 PF00380 Ribosomal protein S9/S16 ND012_RS14195 PF00572 Ribosomal protein L13 ND012_RS14200 PF03969 AFG1-like ATPase ND012_RS14205 PF06295 Protein of unknown function (DUF1043) ND012_RS14210 PF13180 PDZ domain ND012_RS14210 PF00595 PDZ domain ND012_RS14215 PF13180 PDZ domain ND012_RS14220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ND012_RS14225 PF01722 BolA-like protein ND012_RS14230 PF13466 STAS domain ND012_RS14235 PF05494 MlaC protein ND012_RS14240 PF02470 MlaD protein ND012_RS14245 PF02405 Permease MlaE ND012_RS14250 PF00005 ABC transporter ND012_RS14255 PF01699 Sodium/calcium exchanger protein ND012_RS14260 PF01380 SIS domain ND012_RS14260 PF00571 CBS domain ND012_RS14270 PF06835 Lipopolysaccharide-assembly, LptC-related ND012_RS14275 PF03968 OstA-like protein ND012_RS14280 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND012_RS14280 PF00005 ABC transporter ND012_RS14285 PF04552 Sigma-54, DNA binding domain ND012_RS14285 PF04963 Sigma-54 factor, core binding domain ND012_RS14285 PF00309 Sigma-54 factor, Activator interacting domain (AID) ND012_RS14290 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ND012_RS14295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ND012_RS14300 PF03668 P-loop ATPase protein family ND012_RS14305 PF00381 PTS HPr component phosphorylation site ND012_RS14310 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ND012_RS14310 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ND012_RS14315 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain ND012_RS14315 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain ND012_RS14320 PF01042 Endoribonuclease L-PSP ND012_RS14325 PF11941 Domain of unknown function (DUF3459) ND012_RS14325 PF00128 Alpha amylase, catalytic domain ND012_RS14330 PF02378 Phosphotransferase system, EIIC ND012_RS14330 PF00367 phosphotransferase system, EIIB ND012_RS14335 PF00356 Bacterial regulatory proteins, lacI family ND012_RS14340 PF00689 Cation transporting ATPase, C-terminus ND012_RS14340 PF00690 Cation transporter/ATPase, N-terminus ND012_RS14350 PF14760 Rnk N-terminus ND012_RS14350 PF01272 Transcription elongation factor, GreA/GreB, C-term ND012_RS14355 PF07361 Cytochrome b562 ND012_RS14360 PF01523 Putative modulator of DNA gyrase ND012_RS14365 PF04751 Protein of unknown function (DUF615) ND012_RS14370 PF01337 Barstar (barnase inhibitor) ND012_RS14375 PF00545 ribonuclease ND012_RS14380 PF00171 Aldehyde dehydrogenase family ND012_RS14385 PF04632 Fusaric acid resistance protein family ND012_RS14390 PF13533 Biotin-lipoyl like ND012_RS14395 PF07869 Protein of unknown function (DUF1656) ND012_RS14400 PF03466 LysR substrate binding domain ND012_RS14400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS14405 PF01523 Putative modulator of DNA gyrase ND012_RS14410 PF00795 Carbon-nitrogen hydrolase ND012_RS14415 PF13502 AsmA-like C-terminal region ND012_RS14415 PF13116 Protein of unknown function ND012_RS14420 PF10150 Ribonuclease E/G family ND012_RS14420 PF00575 S1 RNA binding domain ND012_RS14425 PF02545 Maf-like protein ND012_RS14430 PF04093 rod shape-determining protein MreD ND012_RS14435 PF04085 rod shape-determining protein MreC ND012_RS14445 PF00563 EAL domain ND012_RS14445 PF17157 Gammaproteobacterial periplasmic sensor domain ND012_RS14445 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS14450 PF00107 Zinc-binding dehydrogenase ND012_RS14450 PF08240 Alcohol dehydrogenase GroES-like domain ND012_RS14455 PF00174 Oxidoreductase molybdopterin binding domain ND012_RS14460 PF01794 Ferric reductase like transmembrane component ND012_RS14465 PF01220 Dehydroquinase class II ND012_RS14470 PF00364 Biotin-requiring enzyme ND012_RS14475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ND012_RS14475 PF00289 Biotin carboxylase, N-terminal domain ND012_RS14475 PF02785 Biotin carboxylase C-terminal domain ND012_RS14480 PF06196 Protein of unknown function (DUF997) ND012_RS14485 PF00474 Sodium:solute symporter family ND012_RS14495 PF01207 Dihydrouridine synthase (Dus) ND012_RS14500 PF02954 Bacterial regulatory protein, Fis family ND012_RS14510 PF03279 Bacterial lipid A biosynthesis acyltransferase ND012_RS14515 PF00484 Carbonic anhydrase ND012_RS14520 PF04172 LrgB-like family ND012_RS14525 PF03788 LrgA family ND012_RS14530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS14530 PF03466 LysR substrate binding domain ND012_RS14535 PF00999 Sodium/hydrogen exchanger family ND012_RS14540 PF00860 Permease family ND012_RS14550 PF00436 Single-strand binding protein family ND012_RS14555 PF00005 ABC transporter ND012_RS14555 PF17755 UvrA DNA-binding domain ND012_RS14555 PF17760 UvrA interaction domain ND012_RS14560 PF04237 YjbR ND012_RS14565 PF00155 Aminotransferase class I and II ND012_RS14570 PF00842 Alanine racemase, C-terminal domain ND012_RS14570 PF01168 Alanine racemase, N-terminal domain ND012_RS14575 PF00772 DnaB-like helicase N terminal domain ND012_RS14575 PF03796 DnaB-like helicase C terminal domain ND012_RS14580 PF08240 Alcohol dehydrogenase GroES-like domain ND012_RS14580 PF00107 Zinc-binding dehydrogenase ND012_RS14585 PF09583 Phage shock protein G (Phageshock_PspG) ND012_RS14590 PF01207 Dihydrouridine synthase (Dus) ND012_RS14595 PF01475 Ferric uptake regulator family ND012_RS14600 PF00717 Peptidase S24-like ND012_RS14600 PF01726 LexA DNA binding domain ND012_RS14605 PF01219 Prokaryotic diacylglycerol kinase ND012_RS14610 PF01553 Acyltransferase ND012_RS14615 PF01040 UbiA prenyltransferase family ND012_RS14620 PF04345 Chorismate lyase ND012_RS14625 PF07148 Maltose operon periplasmic protein precursor (MalM) ND012_RS14630 PF02264 LamB porin ND012_RS14635 PF00005 ABC transporter ND012_RS14635 PF17912 MalK OB fold domain ND012_RS14645 PF01547 Bacterial extracellular solute-binding protein ND012_RS14650 PF14785 Maltose transport system permease protein MalF P2 domain ND012_RS14650 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS14655 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS14660 PF06146 Phosphate-starvation-inducible E ND012_RS14665 PF00342 Phosphoglucose isomerase ND012_RS14670 PF00696 Amino acid kinase family ND012_RS14670 PF01842 ACT domain ND012_RS14675 PF08479 POTRA domain, ShlB-type ND012_RS14675 PF17287 POTRA domain ND012_RS14675 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ND012_RS14680 PF13332 Hemagglutinin repeat ND012_RS14680 PF05860 haemagglutination activity domain ND012_RS14685 PF04488 Glycosyltransferase sugar-binding region containing DXD motif ND012_RS14695 PF17758 Proteasomal ATPase OB N-terminal domain ND012_RS14695 PF16450 Proteasomal ATPase OB C-terminal domain ND012_RS14695 PF00004 ATPase family associated with various cellular activities (AAA) ND012_RS14775 PF03466 LysR substrate binding domain ND012_RS14775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS14790 PF02574 Homocysteine S-methyltransferase ND012_RS14790 PF00809 Pterin binding enzyme ND012_RS14790 PF02965 Vitamin B12 dependent methionine synthase, activation domain ND012_RS14790 PF02607 B12 binding domain ND012_RS14790 PF02310 B12 binding domain ND012_RS14795 PF09339 IclR helix-turn-helix domain ND012_RS14795 PF01614 Bacterial transcriptional regulator ND012_RS14800 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ND012_RS14805 PF00463 Isocitrate lyase family ND012_RS14810 PF01274 Malate synthase ND012_RS14815 PF04204 Homoserine O-succinyltransferase ND012_RS14850 PF01808 AICARFT/IMPCHase bienzyme ND012_RS14850 PF02142 MGS-like domain ND012_RS14855 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ND012_RS14855 PF02844 Phosphoribosylglycinamide synthetase, N domain ND012_RS14855 PF02843 Phosphoribosylglycinamide synthetase, C domain ND012_RS14860 PF07356 Protein of unknown function (DUF1481) ND012_RS14865 PF00216 Bacterial DNA-binding protein ND012_RS14870 PF04222 Protein of unknown function (DUF416) ND012_RS14875 PF04493 Endonuclease V ND012_RS14880 PF01208 Uroporphyrinogen decarboxylase (URO-D) ND012_RS14885 PF00293 NUDIX domain ND012_RS14885 PF09297 NADH pyrophosphatase zinc ribbon domain ND012_RS14890 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ ND012_RS14895 PF01964 Radical SAM ThiC family ND012_RS14895 PF13667 ThiC-associated domain ND012_RS14900 PF02581 Thiamine monophosphate synthase ND012_RS14905 PF00899 ThiF family ND012_RS14910 PF02597 ThiS family ND012_RS14915 PF05690 Thiazole biosynthesis protein ThiG ND012_RS14920 PF04055 Radical SAM superfamily ND012_RS14920 PF06968 Biotin and Thiamin Synthesis associated domain ND012_RS14925 PF04997 RNA polymerase Rpb1, domain 1 ND012_RS14925 PF05000 RNA polymerase Rpb1, domain 4 ND012_RS14925 PF04998 RNA polymerase Rpb1, domain 5 ND012_RS14925 PF04983 RNA polymerase Rpb1, domain 3 ND012_RS14925 PF00623 RNA polymerase Rpb1, domain 2 ND012_RS14930 PF04561 RNA polymerase Rpb2, domain 2 ND012_RS14930 PF04565 RNA polymerase Rpb2, domain 3 ND012_RS14930 PF10385 RNA polymerase beta subunit external 1 domain ND012_RS14930 PF00562 RNA polymerase Rpb2, domain 6 ND012_RS14930 PF04560 RNA polymerase Rpb2, domain 7 ND012_RS14930 PF04563 RNA polymerase beta subunit ND012_RS14935 PF00542 Ribosomal protein L7/L12 C-terminal domain ND012_RS14935 PF16320 Ribosomal protein L7/L12 dimerisation domain ND012_RS14940 PF00466 Ribosomal protein L10 ND012_RS14945 PF00687 Ribosomal protein L1p/L10e family ND012_RS14950 PF00298 Ribosomal protein L11, RNA binding domain ND012_RS14950 PF03946 Ribosomal protein L11, N-terminal domain ND012_RS14955 PF02357 Transcription termination factor nusG ND012_RS14955 PF00467 KOW motif ND012_RS14960 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ND012_RS14965 PF03143 Elongation factor Tu C-terminal domain ND012_RS14965 PF03144 Elongation factor Tu domain 2 ND012_RS14965 PF00009 Elongation factor Tu GTP binding domain ND012_RS14990 PF00485 Phosphoribulokinase / Uridine kinase family ND012_RS14995 PF08279 HTH domain ND012_RS14995 PF03099 Biotin/lipoate A/B protein ligase family ND012_RS14995 PF02237 Biotin protein ligase C terminal domain ND012_RS15000 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ND012_RS15000 PF01565 FAD binding domain ND012_RS15030 PF12724 Flavodoxin domain ND012_RS15035 PF02386 Cation transport protein ND012_RS15040 PF01205 Uncharacterized protein family UPF0029 ND012_RS15040 PF09186 Domain of unknown function (DUF1949) ND012_RS15045 PF00557 Metallopeptidase family M24 ND012_RS15050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ND012_RS15050 PF00378 Enoyl-CoA hydratase/isomerase ND012_RS15050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ND012_RS15055 PF02803 Thiolase, C-terminal domain ND012_RS15055 PF00108 Thiolase, N-terminal domain ND012_RS15060 PF00970 Oxidoreductase FAD-binding domain ND012_RS15060 PF00175 Oxidoreductase NAD-binding domain ND012_RS15065 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ND012_RS15075 PF02357 Transcription termination factor nusG ND012_RS15080 PF00490 Delta-aminolevulinic acid dehydratase ND012_RS15085 PF01026 TatD related DNase ND012_RS15090 PF00902 Sec-independent protein translocase protein (TatC) ND012_RS15100 PF02416 mttA/Hcf106 family ND012_RS15105 PF03109 ABC1 family ND012_RS15110 PF02036 SCP-2 sterol transfer family ND012_RS15115 PF01209 ubiE/COQ5 methyltransferase family ND012_RS15120 PF02646 RmuC family ND012_RS15125 PF09335 SNARE associated Golgi protein ND012_RS15130 PF13722 5TM C-terminal transporter carbon starvation CstA ND012_RS15130 PF02554 Carbon starvation protein CstA ND012_RS15140 PF01048 Phosphorylase superfamily ND012_RS15145 PF01738 Dienelactone hydrolase family ND012_RS15150 PF01717 Cobalamin-independent synthase, Catalytic domain ND012_RS15150 PF08267 Cobalamin-independent synthase, N-terminal domain ND012_RS15155 PF03466 LysR substrate binding domain ND012_RS15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS15160 PF00892 EamA-like transporter family ND012_RS15170 PF03009 Glycerophosphoryl diester phosphodiesterase family ND012_RS15175 PF00005 ABC transporter ND012_RS15175 PF17912 MalK OB fold domain ND012_RS15180 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS15185 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS15190 PF13416 Bacterial extracellular solute-binding protein ND012_RS15235 PF00005 ABC transporter ND012_RS15240 PF00005 ABC transporter ND012_RS15240 PF12399 Branched-chain amino acid ATP-binding cassette transporter ND012_RS15245 PF02653 Branched-chain amino acid transport system / permease component ND012_RS15245 PF11862 Domain of unknown function (DUF3382) ND012_RS15250 PF02653 Branched-chain amino acid transport system / permease component ND012_RS15255 PF13458 Periplasmic binding protein ND012_RS15260 PF12568 Acetyltransferase (GNAT) domain, PanZ ND012_RS15265 PF02595 Glycerate kinase family ND012_RS15270 PF02447 GntP family permease ND012_RS15275 PF05651 Putative sugar diacid recognition ND012_RS15275 PF17853 GGDEF-like domain ND012_RS15275 PF13556 PucR C-terminal helix-turn-helix domain ND012_RS15280 PF00140 Sigma-70 factor, region 1.2 ND012_RS15280 PF04542 Sigma-70 region 2 ND012_RS15280 PF04545 Sigma-70, region 4 ND012_RS15285 PF02687 FtsX-like permease family ND012_RS15285 PF18075 FtsX extracellular domain ND012_RS15290 PF00005 ABC transporter ND012_RS15295 PF02881 SRP54-type protein, helical bundle domain ND012_RS15295 PF00448 SRP54-type protein, GTPase domain ND012_RS15295 PF02881 SRP54-type protein, helical bundle domain ND012_RS15295 PF00448 SRP54-type protein, GTPase domain ND012_RS15305 PF06611 Protein of unknown function (DUF1145) ND012_RS15320 PF07947 YhhN family ND012_RS15325 PF00403 Heavy-metal-associated domain ND012_RS15330 PF01206 Sulfurtransferase TusA ND012_RS15335 PF02592 Putative vitamin uptake transporter ND012_RS15340 PF08786 DcrB ND012_RS15345 PF13183 4Fe-4S dicluster domain ND012_RS15345 PF02754 Cysteine-rich domain ND012_RS15350 PF00890 FAD binding domain ND012_RS15355 PF04324 BFD-like [2Fe-2S] binding domain ND012_RS15355 PF01266 FAD dependent oxidoreductase ND012_RS15365 PF07690 Major Facilitator Superfamily ND012_RS15370 PF03009 Glycerophosphoryl diester phosphodiesterase family ND012_RS15380 PF12146 Serine aminopeptidase, S33 ND012_RS15385 PF01810 LysE type translocator ND012_RS15390 PF16124 RecQ zinc-binding ND012_RS15390 PF00271 Helicase conserved C-terminal domain ND012_RS15390 PF00270 DEAD/DEAH box helicase ND012_RS15390 PF00570 HRDC domain ND012_RS15390 PF09382 RQC domain ND012_RS15395 PF02253 Phospholipase A1 ND012_RS15400 PF03061 Thioesterase superfamily ND012_RS15405 PF00892 EamA-like transporter family ND012_RS15410 PF01544 CorA-like Mg2+ transporter protein ND012_RS15420 PF09370 Phosphoenolpyruvate hydrolase-like ND012_RS15435 PF13361 UvrD-like helicase C-terminal domain ND012_RS15435 PF00580 UvrD/REP helicase N-terminal domain ND012_RS15440 PF13419 Haloacid dehalogenase-like hydrolase ND012_RS15445 PF00589 Phage integrase family ND012_RS15445 PF02899 Phage integrase, N-terminal SAM-like domain ND012_RS15450 PF04340 Protein of unknown function, DUF484 ND012_RS15455 PF01678 Diaminopimelate epimerase ND012_RS15460 PF13627 Prokaryotic lipoprotein-attachment site ND012_RS15465 PF01491 Frataxin-like domain ND012_RS15470 PF12633 Adenylate cyclase NT domain ND012_RS15470 PF01295 Adenylate cyclase, class-I ND012_RS15475 PF03900 Porphobilinogen deaminase, C-terminal domain ND012_RS15475 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ND012_RS15480 PF02602 Uroporphyrinogen-III synthase HemD ND012_RS15485 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ND012_RS15490 PF07719 Tetratricopeptide repeat ND012_RS15490 PF07219 HemY protein N-terminus ND012_RS15515 PF00324 Amino acid permease ND012_RS15520 PF03808 Glycosyl transferase WecB/TagA/CpsF family ND012_RS15525 PF06899 WzyE protein, O-antigen assembly polymerase ND012_RS15530 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ND012_RS15535 PF01943 Polysaccharide biosynthesis protein ND012_RS15540 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ND012_RS15550 PF00483 Nucleotidyl transferase ND012_RS15555 PF16363 GDP-mannose 4,6 dehydratase ND012_RS15560 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ND012_RS15560 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ND012_RS15560 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ND012_RS15565 PF02350 UDP-N-acetylglucosamine 2-epimerase ND012_RS15570 PF02706 Chain length determinant protein ND012_RS15575 PF00953 Glycosyl transferase family 4 ND012_RS15580 PF07497 Rho termination factor, RNA-binding domain ND012_RS15580 PF07498 Rho termination factor, N-terminal domain ND012_RS15580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND012_RS15585 PF00085 Thioredoxin ND012_RS15590 PF00271 Helicase conserved C-terminal domain ND012_RS15590 PF00270 DEAD/DEAH box helicase ND012_RS15595 PF02541 Ppx/GppA phosphatase family ND012_RS15600 PF00580 UvrD/REP helicase N-terminal domain ND012_RS15600 PF13361 UvrD-like helicase C-terminal domain ND012_RS15610 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ND012_RS15610 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ND012_RS15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS15615 PF03466 LysR substrate binding domain ND012_RS15620 PF18416 N-acetylglucosamine binding protein domain 2 ND012_RS15620 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ND012_RS15625 PF00291 Pyridoxal-phosphate dependent enzyme ND012_RS15625 PF00585 C-terminal regulatory domain of Threonine dehydratase ND012_RS15630 PF00920 Dehydratase family ND012_RS15635 PF01063 Amino-transferase class IV ND012_RS15645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ND012_RS15645 PF00205 Thiamine pyrophosphate enzyme, central domain ND012_RS15645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ND012_RS15650 PF08046 IlvGEDA operon leader peptide ND012_RS15655 PF13335 Magnesium chelatase, subunit ChlI C-terminal ND012_RS15655 PF01078 Magnesium chelatase, subunit ChlI ND012_RS15660 PF04219 Protein of unknown function, DUF ND012_RS15665 PF03466 LysR substrate binding domain ND012_RS15665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS15710 PF01177 Asp/Glu/Hydantoin racemase ND012_RS15715 PF07715 TonB-dependent Receptor Plug Domain ND012_RS15715 PF00593 TonB dependent receptor ND012_RS15720 PF05958 tRNA (Uracil-5-)-methyltransferase ND012_RS15725 PF07226 Protein of unknown function (DUF1422) ND012_RS15730 PF00440 Bacterial regulatory proteins, tetR family ND012_RS15735 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS15735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND012_RS15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS15740 PF03466 LysR substrate binding domain ND012_RS15745 PF00462 Glutaredoxin ND012_RS15745 PF08534 Redoxin ND012_RS15750 PF07992 Pyridine nucleotide-disulphide oxidoreductase ND012_RS15750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ND012_RS15770 PF00529 HlyD membrane-fusion protein of T1SS ND012_RS15775 PF00664 ABC transporter transmembrane region ND012_RS15775 PF00005 ABC transporter ND012_RS15785 PF07715 TonB-dependent Receptor Plug Domain ND012_RS15785 PF00593 TonB dependent receptor ND012_RS15790 PF14698 Argininosuccinate lyase C-terminal ND012_RS15790 PF00206 Lyase ND012_RS15795 PF00764 Arginosuccinate synthase ND012_RS15800 PF00696 Amino acid kinase family ND012_RS15805 PF01118 Semialdehyde dehydrogenase, NAD binding domain ND012_RS15805 PF02774 Semialdehyde dehydrogenase, dimerisation domain ND012_RS15810 PF07687 Peptidase dimerisation domain ND012_RS15810 PF01546 Peptidase family M20/M25/M40 ND012_RS15815 PF00311 Phosphoenolpyruvate carboxylase ND012_RS15825 PF02219 Methylenetetrahydrofolate reductase ND012_RS15835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ND012_RS15835 PF03466 LysR substrate binding domain ND012_RS15870 PF03755 YicC-like family, N-terminal region ND012_RS15870 PF08340 Domain of unknown function (DUF1732) ND012_RS15875 PF03725 3' exoribonuclease family, domain 2 ND012_RS15875 PF01138 3' exoribonuclease family, domain 1 ND012_RS15880 PF00156 Phosphoribosyl transferase domain ND012_RS15885 PF00440 Bacterial regulatory proteins, tetR family ND012_RS15890 PF00692 dUTPase ND012_RS15895 PF02441 Flavoprotein ND012_RS15895 PF04127 DNA / pantothenate metabolism flavoprotein ND012_RS15900 PF04002 RadC-like JAB domain ND012_RS15905 PF00830 Ribosomal L28 family ND012_RS15910 PF00471 Ribosomal protein L33 ND012_RS15915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ND012_RS15915 PF06827 Zinc finger found in FPG and IleRS ND012_RS15915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ND012_RS15920 PF01467 Cytidylyltransferase-like ND012_RS15925 PF00535 Glycosyl transferase family 2 ND012_RS15930 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ND012_RS15935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND012_RS15940 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ND012_RS15945 PF01370 NAD dependent epimerase/dehydratase family ND012_RS15950 PF00155 Aminotransferase class I and II ND012_RS15955 PF00107 Zinc-binding dehydrogenase ND012_RS15955 PF08240 Alcohol dehydrogenase GroES-like domain ND012_RS15960 PF04748 Divergent polysaccharide deacetylase ND012_RS15965 PF01551 Peptidase family M23 ND012_RS15970 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ND012_RS15970 PF01676 Metalloenzyme superfamily ND012_RS15975 PF00581 Rhodanese-like domain ND012_RS15980 PF00462 Glutaredoxin ND012_RS15985 PF02556 Preprotein translocase subunit SecB ND012_RS15990 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ND012_RS15990 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ND012_RS15995 PF06426 Serine acetyltransferase, N-terminal ND012_RS15995 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_RS16000 PF00588 SpoU rRNA Methylase family ND012_RS16005 PF16527 Two-component sensor protein CpxA, periplasmic domain ND012_RS16005 PF00672 HAMP domain ND012_RS16005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS16005 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS16010 PF00486 Transcriptional regulatory protein, C terminal ND012_RS16010 PF00072 Response regulator receiver domain ND012_RS16015 PF07813 LTXXQ motif family protein ND012_RS16020 PF01545 Cation efflux family ND012_RS16020 PF16916 Dimerisation domain of Zinc Transporter ND012_RS16025 PF00365 Phosphofructokinase ND012_RS16035 PF00121 Triosephosphate isomerase ND012_RS16040 PF07305 Protein of unknown function (DUF1454) ND012_RS16045 PF05656 Protein of unknown function (DUF805) ND012_RS16050 PF00175 Oxidoreductase NAD-binding domain ND012_RS16050 PF00970 Oxidoreductase FAD-binding domain ND012_RS16055 PF07690 Major Facilitator Superfamily ND012_RS16060 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ND012_RS16065 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ND012_RS16065 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ND012_RS16070 PF00230 Major intrinsic protein ND012_RS16075 PF06005 Cell division protein ZapB ND012_RS16080 PF03737 Aldolase/RraA ND012_RS16085 PF01040 UbiA prenyltransferase family ND012_RS16090 PF10431 C-terminal, D2-small domain, of ClpB protein ND012_RS16090 PF07724 AAA domain (Cdc48 subfamily) ND012_RS16090 PF00004 ATPase family associated with various cellular activities (AAA) ND012_RS16095 PF00227 Proteasome subunit ND012_RS16100 PF05036 Sporulation related domain ND012_RS16105 PF00356 Bacterial regulatory proteins, lacI family ND012_RS16110 PF18074 Primosomal protein N C-terminal domain ND012_RS16110 PF17764 3′ DNA-binding domain (3′BD) ND012_RS16110 PF00271 Helicase conserved C-terminal domain ND012_RS16110 PF00270 DEAD/DEAH box helicase ND012_RS16110 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ND012_RS16115 PF01197 Ribosomal protein L31 ND012_RS16120 PF01340 Met Apo-repressor, MetJ ND012_RS16125 PF01053 Cys/Met metabolism PLP-dependent enzyme ND012_RS16130 PF00696 Amino acid kinase family ND012_RS16130 PF00742 Homoserine dehydrogenase ND012_RS16130 PF03447 Homoserine dehydrogenase, NAD binding domain ND012_RS16155 PF00990 Diguanylate cyclase, GGDEF domain ND012_RS16155 PF13426 PAS domain ND012_RS16155 PF00563 EAL domain ND012_RS16160 PF00378 Enoyl-CoA hydratase/isomerase ND012_RS16165 PF07670 Nucleoside recognition ND012_RS16165 PF07662 Na+ dependent nucleoside transporter C-terminus ND012_RS16165 PF01773 Na+ dependent nucleoside transporter N-terminus ND012_RS16180 PF03458 UPF0126 domain ND012_RS16185 PF03120 NAD-dependent DNA ligase OB-fold domain ND012_RS16185 PF01653 NAD-dependent DNA ligase adenylation domain ND012_RS16190 PF00625 Guanylate kinase ND012_RS16195 PF01192 RNA polymerase Rpb6 ND012_RS16200 PF02824 TGS domain ND012_RS16200 PF04607 Region found in RelA / SpoT proteins ND012_RS16200 PF13291 ACT domain ND012_RS16205 PF12105 SpoU, rRNA methylase, C-terminal ND012_RS16205 PF00588 SpoU rRNA Methylase family ND012_RS16210 PF00270 DEAD/DEAH box helicase ND012_RS16210 PF00271 Helicase conserved C-terminal domain ND012_RS16210 PF17191 RecG wedge domain ND012_RS16215 PF03616 Sodium/glutamate symporter ND012_RS16220 PF00860 Permease family ND012_RS16225 PF05170 AsmA family ND012_RS16230 PF09500 Putative thioesterase (yiiD_Cterm) ND012_RS16230 PF00583 Acetyltransferase (GNAT) family ND012_RS16235 PF02580 D-Tyr-tRNA(Tyr) deacylase ND012_RS16240 PF03631 Virulence factor BrkB ND012_RS16245 PF13419 Haloacid dehalogenase-like hydrolase ND012_RS16250 PF03144 Elongation factor Tu domain 2 ND012_RS16250 PF00009 Elongation factor Tu GTP binding domain ND012_RS16250 PF00679 Elongation factor G C-terminus ND012_RS16255 PF03951 Glutamine synthetase, beta-Grasp domain ND012_RS16255 PF00120 Glutamine synthetase, catalytic domain ND012_RS16260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ND012_RS16260 PF00512 His Kinase A (phospho-acceptor) domain ND012_RS16260 PF00989 PAS fold ND012_RS16265 PF02954 Bacterial regulatory protein, Fis family ND012_RS16265 PF00158 Sigma-54 interaction domain ND012_RS16265 PF00072 Response regulator receiver domain ND012_RS16270 PF06969 HemN C-terminal domain ND012_RS16270 PF04055 Radical SAM superfamily ND012_RS16275 PF04220 Der GTPase activator (YihI) ND012_RS16280 PF01926 50S ribosome-binding GTPase ND012_RS16285 PF01612 3'-5' exonuclease ND012_RS16285 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ND012_RS16285 PF01367 5'-3' exonuclease, C-terminal SAM fold ND012_RS16285 PF00476 DNA polymerase family A ND012_RS16290 PF01323 DSBA-like thioredoxin domain ND012_RS16295 PF01636 Phosphotransferase enzyme family ND012_RS16300 PF06288 Protein of unknown function (DUF1040) ND012_RS16305 PF12804 MobA-like NTP transferase domain ND012_RS16310 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ND012_RS16335 PF00392 Bacterial regulatory proteins, gntR family ND012_RS16335 PF07729 FCD domain ND012_RS16340 PF00356 Bacterial regulatory proteins, lacI family ND012_RS16345 PF00294 pfkB family carbohydrate kinase ND012_RS16350 PF13407 Periplasmic binding protein domain ND012_RS16355 PF02653 Branched-chain amino acid transport system / permease component ND012_RS16360 PF00005 ABC transporter ND012_RS16365 PF05025 RbsD / FucU transport protein family ND012_RS16370 PF02705 K+ potassium transporter ND012_RS16375 PF17868 AAA lid domain ND012_RS16375 PF12592 Protein of unknown function (DUF3763) ND012_RS16375 PF07728 AAA domain (dynein-related subfamily) ND012_RS16380 PF05762 VWA domain containing CoxE-like protein ND012_RS16390 PF03590 Aspartate-ammonia ligase ND012_RS16395 PF01037 Lrp/AsnC ligand binding domain ND012_RS16400 PF00258 Flavodoxin ND012_RS16405 PF01134 Glucose inhibited division protein A ND012_RS16405 PF13932 GidA associated domain ND012_RS16410 PF02527 rRNA small subunit methyltransferase G ND012_RS16415 PF03899 ATP synthase I chain ND012_RS16420 PF00119 ATP synthase A chain ND012_RS16425 PF00137 ATP synthase subunit C ND012_RS16430 PF00430 ATP synthase B/B' CF(0) ND012_RS16435 PF00213 ATP synthase delta (OSCP) subunit ND012_RS16440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND012_RS16440 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND012_RS16440 PF00306 ATP synthase alpha/beta chain, C terminal domain ND012_RS16445 PF00231 ATP synthase ND012_RS16450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ND012_RS16450 PF02874 ATP synthase alpha/beta family, beta-barrel domain ND012_RS16455 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ND012_RS16455 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ND012_RS16460 PF12804 MobA-like NTP transferase domain ND012_RS16460 PF00132 Bacterial transferase hexapeptide (six repeats) ND012_RS16465 PF01380 SIS domain ND012_RS16470 PF12849 PBP superfamily domain ND012_RS16475 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS16480 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS16485 PF00005 ABC transporter ND012_RS16490 PF01895 PhoU domain ND012_RS16495 PF00497 Bacterial extracellular solute-binding proteins, family 3 ND012_RS16500 PF00528 Binding-protein-dependent transport system inner membrane component ND012_RS16510 PF00860 Permease family ND012_RS16515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ND012_RS16515 PF02203 Tar ligand binding domain homologue ND012_RS16515 PF00672 HAMP domain ND012_RS16525 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ND012_RS16525 PF02753 Pili assembly chaperone PapD, C-terminal domain ND012_RS16530 PF00577 Outer membrane usher protein ND012_RS16530 PF13953 PapC C-terminal domain ND012_RS16530 PF13954 PapC N-terminal domain ND012_RS16540 PF01926 50S ribosome-binding GTPase ND012_RS16540 PF12631 MnmE helical domain ND012_RS16540 PF10396 GTP-binding protein TrmE N-terminus ND012_RS16545 PF02096 60Kd inner membrane protein ND012_RS16545 PF14849 YidC periplasmic domain ND012_RS16550 PF01809 Putative membrane protein insertion efficiency factor ND012_RS16555 PF00825 Ribonuclease P ND012_RS16560 PF00468 Ribosomal protein L34