locus-tag	class	description
ND441_RS00010	COG0592	DNA-directed DNA polymerase activity
ND441_RS00020	COG0187	DNA topoisomerase II activity
ND441_RS00025	COG0561	phosphatase activity
ND441_RS00030	COG0823	Involved in the tonB-independent uptake of proteins
ND441_RS00035	COG5645	(Lipo)protein
ND441_RS00050	COG0569	domain protein
ND441_RS00050	COG2985	domain, Protein
ND441_RS00055	COG3977	Valine--pyruvate aminotransferase
ND441_RS00060	COG2885	chlorophyll binding
ND441_RS00080	COG2818	Glycosylase
ND441_RS00130	COG2213	PTS system mannitol-specific
ND441_RS00130	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ND441_RS00140	COG3722	fumarate hydratase activity
ND441_RS00150	COG2258	MOSC domain
ND441_RS00155	COG0840	transmembrane signaling receptor activity
ND441_RS00160	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ND441_RS00175	COG0437	4 iron, 4 sulfur cluster binding
ND441_RS00180	COG2864	formate dehydrogenase
ND441_RS00190	COG1921	L-seryl-tRNASec selenium transferase activity
ND441_RS00195	COG3276	selenocysteine insertion sequence binding
ND441_RS00200	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
ND441_RS00210	COG3274	enterobacterial common antigen metabolic process
ND441_RS00220	COG0582	viral genome integration into host DNA
ND441_RS00255	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ND441_RS00260	COG2986	histidine ammonia-lyase
ND441_RS00280	COG2194	sulfuric ester hydrolase activity
ND441_RS00285	COG2197	response regulator
ND441_RS00290	COG3851	Histidine kinase
ND441_RS00295	COG2271	Major facilitator Superfamily
ND441_RS00305	COG0747	negative chemotaxis
ND441_RS00310	COG0601	transmembrane transport
ND441_RS00315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ND441_RS00320	COG0444	Belongs to the ABC transporter superfamily
ND441_RS00325	COG4608	Belongs to the ABC transporter superfamily
ND441_RS00330	COG2194	sulfuric ester hydrolase activity
ND441_RS00355	COG1215	transferase activity, transferring glycosyl groups
ND441_RS00360	COG1215	transferase activity, transferring glycosyl groups
ND441_RS00365	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
ND441_RS00370	COG3118	belongs to the thioredoxin family
ND441_RS00370	COG0457	Tetratricopeptide repeat
ND441_RS00375	COG2199	diguanylate cyclase activity
ND441_RS00375	COG2200	EAL domain
ND441_RS00380	COG1301	dicarboxylic acid transport
ND441_RS00385	COG0612	Peptidase, M16
ND441_RS00390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ND441_RS00395	COG1942	4-Oxalocrotonate Tautomerase
ND441_RS00400	COG2200	EAL domain
ND441_RS00405	COG2134	cdp-diacylglycerol pyrophosphatase
ND441_RS00410	COG1295	ribonuclease BN
ND441_RS00420	COG1301	dicarboxylic acid transport
ND441_RS00425	COG0626	cystathionine gamma-synthase activity
ND441_RS00435	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ND441_RS00440	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ND441_RS00445	COG0339	signal peptide processing
ND441_RS00450	COG0742	ribosomal rna small subunit methyltransferase
ND441_RS00460	COG0589	response to stress
ND441_RS00470	COG0306	phosphate transporter
ND441_RS00475	COG2081	HI0933 family
ND441_RS00485	COG1247	-acetyltransferase
ND441_RS00495	COG1741	Belongs to the pirin family
ND441_RS00500	COG1609	Transcriptional regulator
ND441_RS00505	COG2610	gluconate transmembrane transporter activity
ND441_RS00510	COG3265	gluconokinase activity
ND441_RS00515	COG2095	MarC family integral membrane protein
ND441_RS00520	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ND441_RS00525	COG3275	phosphorelay sensor kinase activity
ND441_RS00530	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ND441_RS00535	COG1523	belongs to the glycosyl hydrolase 13 family
ND441_RS00540	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
ND441_RS00545	COG0297	glycogen (starch) synthase activity
ND441_RS00550	COG0058	SHG alpha-glucan phosphorylase activity
ND441_RS00555	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
ND441_RS00560	COG1349	DNA-binding transcription factor activity
ND441_RS00565	COG0705	Rhomboid family
ND441_RS00575	COG2909	trisaccharide binding
ND441_RS00580	COG0058	SHG alpha-glucan phosphorylase activity
ND441_RS00585	COG1640	4-alpha-glucanotransferase
ND441_RS00595	COG1040	competence protein
ND441_RS00600	COG0596	Alpha beta hydrolase
ND441_RS00620	COG1918	ferrous iron import across plasma membrane
ND441_RS00625	COG2183	response to ionizing radiation
ND441_RS00650	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ND441_RS00665	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
ND441_RS00675	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
ND441_RS00680	COG1011	Hydrolase
ND441_RS00690	COG0494	nUDIX hydrolase
ND441_RS00695	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ND441_RS00720	COG4796	Type ii and iii secretion system protein
ND441_RS00725	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
ND441_RS00745	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ND441_RS00755	COG0180	Tryptophanyl-tRNA synthetase
ND441_RS00775	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ND441_RS00780	COG0402	S-adenosylhomocysteine deaminase activity
ND441_RS00785	COG0738	Major facilitator superfamily
ND441_RS00800	COG1609	Transcriptional regulator
ND441_RS00805	COG1486	melibiose metabolic process
ND441_RS00810	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ND441_RS00825	COG1289	transmembrane transporter activity
ND441_RS00830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ND441_RS00835	COG1765	OsmC-like protein
ND441_RS00860	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ND441_RS00865	COG3954	Phosphoribulokinase
ND441_RS00875	COG0429	hydrolase of the alpha beta-hydrolase fold
ND441_RS00885	COG0859	PFAM glycosyl transferase family 9
ND441_RS00890	COG1216	Glycosyl transferase, family 2
ND441_RS00895	COG0488	(ABC) transporter
ND441_RS00900	COG2249	NAD(P)H dehydrogenase (quinone) activity
ND441_RS00910	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
ND441_RS00915	COG1047	Peptidyl-prolyl cis-trans
ND441_RS00925	COG0545	Peptidyl-prolyl cis-trans isomerase
ND441_RS00930	COG2964	Protein conserved in bacteria
ND441_RS00940	COG2923	Belongs to the DsrF TusC family
ND441_RS00945	COG2168	tRNA wobble position uridine thiolation
ND441_RS00950	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ND441_RS00955	COG0049	tRNA binding
ND441_RS00965	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ND441_RS00980	COG0051	transcription antitermination factor activity, RNA binding
ND441_RS00985	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
ND441_RS00995	COG0089	rRNA binding
ND441_RS01000	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
ND441_RS01005	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
ND441_RS01010	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
ND441_RS01020	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ND441_RS01025	COG0255	Belongs to the universal ribosomal protein uL29 family
ND441_RS01030	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ND441_RS01035	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
ND441_RS01045	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
ND441_RS01070	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ND441_RS01075	COG1841	ribosomal large subunit assembly
ND441_RS01080	COG0200	Binds to the 23S rRNA
ND441_RS01085	COG0201	protein transport
ND441_RS01090	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ND441_RS01095	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ND441_RS01105	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
ND441_RS01115	COG0203	ribosomal protein L17
ND441_RS01120	COG0789	Transcriptional regulator
ND441_RS01125	COG3036	rescue of stalled ribosome
ND441_RS01130	COG1970	mechanosensitive ion channel activity
ND441_RS01140	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ND441_RS01140	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ND441_RS01145	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
ND441_RS01150	COG0242	peptide deformylase activity
ND441_RS01155	COG0758	DNA mediated transformation
ND441_RS01160	COG2922	Belongs to the Smg family
ND441_RS01165	COG0551	DNA topoisomerase type I activity
ND441_RS01170	COG0009	L-threonylcarbamoyladenylate synthase
ND441_RS01180	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ND441_RS01210	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ND441_RS01215	COG3162	membrane
ND441_RS01220	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ND441_RS01225	COG1301	dicarboxylic acid transport
ND441_RS01235	COG2391	methyltransferase activity
ND441_RS01240	COG0425	Belongs to the sulfur carrier protein TusA family
ND441_RS01245	COG1086	Polysaccharide biosynthesis protein
ND441_RS01250	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ND441_RS01255	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ND441_RS01260	COG2089	acid synthase
ND441_RS01280	COG1083	cytidylyl-transferase
ND441_RS01280	COG2755	lipolytic protein G-D-S-L family
ND441_RS01285	COG1028	Short-chain dehydrogenase reductase Sdr
ND441_RS01305	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ND441_RS01305	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ND441_RS01310	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ND441_RS01330	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ND441_RS01350	COG1309	transcriptional regulator
ND441_RS01355	COG4232	protein-disulfide reductase activity
ND441_RS01365	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
ND441_RS01395	COG1509	lysine 2,3-aminomutase activity
ND441_RS01405	COG3397	chitin binding
ND441_RS01425	COG3188	usher protein
ND441_RS01445	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
ND441_RS01450	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
ND441_RS01455	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ND441_RS01460	COG1053	succinate dehydrogenase
ND441_RS01465	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ND441_RS01470	COG3264	Mechanosensitive ion channel
ND441_RS01470	COG1511	domain protein
ND441_RS01475	COG0688	phosphatidylethanolamine metabolic process
ND441_RS01480	COG1162	GTPase activity
ND441_RS01485	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
ND441_RS01505	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ND441_RS01510	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ND441_RS01510	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ND441_RS01515	COG0802	atpase or kinase
ND441_RS01520	COG0860	N-Acetylmuramoyl-L-alanine amidase
ND441_RS01530	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ND441_RS01540	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ND441_RS01545	COG0330	HflC and HflK could
ND441_RS01550	COG0330	HflC and HflK could
ND441_RS01555	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
ND441_RS01560	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ND441_RS01565	COG1959	2 iron, 2 sulfur cluster binding
ND441_RS01570	COG0557	exoribonuclease II activity
ND441_RS01575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ND441_RS01595	COG3121	Chaperone
ND441_RS01600	COG3188	usher protein
ND441_RS01620	COG1073	alpha beta
ND441_RS01630	COG0360	Binds together with S18 to 16S ribosomal RNA
ND441_RS01635	COG2965	DNA replication, synthesis of RNA primer
ND441_RS01640	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
ND441_RS01645	COG0359	binds to the 23S rRNA
ND441_RS01650	COG3061	Opacity-associated protein A
ND441_RS01655	COG0545	Peptidyl-prolyl cis-trans isomerase
ND441_RS01665	COG0737	Belongs to the 5'-nucleotidase family
ND441_RS01670	COG1218	3'(2'),5'-bisphosphate nucleotidase
ND441_RS01675	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
ND441_RS01685	COG1253	flavin adenine dinucleotide binding
ND441_RS01690	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ND441_RS01695	COG0729	surface antigen
ND441_RS01700	COG2911	Protein conserved in bacteria
ND441_RS01705	COG2105	PFAM AIG2 family protein
ND441_RS01710	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ND441_RS01720	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ND441_RS01735	COG3423	Transcriptional regulator
ND441_RS01750	COG0142	geranyltranstransferase activity
ND441_RS01765	COG0697	spore germination
ND441_RS01770	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
ND441_RS01775	COG0642	Histidine kinase
ND441_RS01780	COG0745	RESPONSE REGULATOR receiver
ND441_RS01785	COG2027	D-alanyl-D-alanine carboxypeptidase
ND441_RS01795	COG1534	Rna-binding protein
ND441_RS01800	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
ND441_RS01810	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ND441_RS01815	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ND441_RS01820	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ND441_RS01840	COG0195	Participates in both transcription termination and antitermination
ND441_RS01850	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
ND441_RS01865	COG1185	polyribonucleotide nucleotidyltransferase activity
ND441_RS01875	COG0513	Belongs to the DEAD box helicase family
ND441_RS01880	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ND441_RS01895	COG0826	peptidase U32
ND441_RS01900	COG0826	peptidase U32
ND441_RS01905	COG3154	lipid carrier protein
ND441_RS01910	COG3153	acetyltransferase
ND441_RS01915	COG2827	Endonuclease containing a URI domain
ND441_RS01920	COG0531	amino acid
ND441_RS01925	COG1982	Orn Lys Arg decarboxylase major
ND441_RS01935	COG3787	Belongs to the UPF0306 family
ND441_RS01940	COG0702	epimerase
ND441_RS01945	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
ND441_RS01950	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
ND441_RS01955	COG3454	Phosphonate metabolism
ND441_RS01960	COG4778	phosphonate C-P lyase system protein PhnL
ND441_RS01965	COG4107	phosphonate C-P lyase system protein PhnK
ND441_RS01970	COG3627	carbon phosphorus lyase activity
ND441_RS01975	COG3626	phosphonate metabolism
ND441_RS01980	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
ND441_RS01985	COG3624	Phosphonate C-P lyase system protein PhnG
ND441_RS02005	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
ND441_RS02020	COG2927	DNA polymerase III (CHI subunit)
ND441_RS02025	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ND441_RS02030	COG0795	lipopolysaccharide-transporting ATPase activity
ND441_RS02035	COG0795	lipopolysaccharide-transporting ATPase activity
ND441_RS02075	COG3077	Addiction module antitoxin, RelB DinJ family
ND441_RS02180	COG5492	domain, Protein
ND441_RS02200	COG3119	arylsulfatase activity
ND441_RS02205	COG1349	DNA-binding transcription factor activity
ND441_RS02215	COG2222	sugar isomerase
ND441_RS02220	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ND441_RS02225	COG3715	PTS system
ND441_RS02230	COG3716	PTS system mannose fructose sorbose family IID component
ND441_RS02240	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ND441_RS02250	COG1028	Short-chain dehydrogenase reductase Sdr
ND441_RS02260	COG0641	radical SAM
ND441_RS02265	COG3119	arylsulfatase activity
ND441_RS02290	COG0859	PFAM glycosyl transferase family 9
ND441_RS02305	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ND441_RS02310	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ND441_RS02320	COG2376	Dihydroxyacetone kinase
ND441_RS02325	COG1461	Dihydroxyacetone kinase
ND441_RS02330	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
ND441_RS02330	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ND441_RS02330	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ND441_RS02370	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
ND441_RS02385	COG2823	Periplasmic or secreted lipoprotein
ND441_RS02395	COG4667	esterase of the alpha-beta hydrolase superfamily
ND441_RS02400	COG0084	hydrolase, TatD family'
ND441_RS02405	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ND441_RS02420	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
ND441_RS02430	COG3726	membrane protein affecting hemolysin expression
ND441_RS02435	COG0560	Phosphoserine phosphatase
ND441_RS02450	COG0488	(ABC) transporter
ND441_RS02475	COG0741	lytic transglycosylase activity
ND441_RS02480	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
ND441_RS02485	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
ND441_RS02490	COG0406	alpha-ribazole phosphatase activity
ND441_RS02495	COG3708	Transcriptional regulator
ND441_RS02495	COG2207	Transcriptional regulator
ND441_RS02500	COG3045	CreA protein
ND441_RS02505	COG0745	RESPONSE REGULATOR receiver
ND441_RS02540	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ND441_RS02545	COG0521	Mo-molybdopterin cofactor biosynthetic process
ND441_RS02550	COG0477	Major facilitator Superfamily
ND441_RS02560	COG1584	GPR1 FUN34 yaaH family protein
ND441_RS02565	COG0443	Heat shock 70 kDa protein
ND441_RS02575	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ND441_RS02580	COG0583	DNA-binding transcription factor activity
ND441_RS02590	COG0196	riboflavin kinase activity
ND441_RS02600	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
ND441_RS02605	COG1047	Peptidyl-prolyl cis-trans
ND441_RS02610	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
ND441_RS02625	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ND441_RS02635	COG2966	Psort location CytoplasmicMembrane, score
ND441_RS02660	COG2967	ApaG domain
ND441_RS02665	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ND441_RS02670	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ND441_RS02680	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
ND441_RS02690	COG0564	pseudouridine synthase activity
ND441_RS02695	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ND441_RS02700	COG0417	DNA replication proofreading
ND441_RS02705	COG0586	Pfam SNARE associated Golgi protein
ND441_RS02715	COG1178	ABC-type Fe3 transport system permease component
ND441_RS02720	COG4143	(ABC) transporter
ND441_RS02735	COG2814	Major facilitator Superfamily
ND441_RS02745	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
ND441_RS02750	COG0473	3-isopropylmalate dehydrogenase activity
ND441_RS02765	COG1022	Amp-dependent synthetase and ligase
ND441_RS02770	COG0028	Belongs to the TPP enzyme family
ND441_RS02795	COG0275	rRNA processing
ND441_RS02800	COG3116	cell division
ND441_RS02805	COG0768	penicillin binding
ND441_RS02810	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ND441_RS02815	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ND441_RS02830	COG0772	Belongs to the SEDS family
ND441_RS02835	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
ND441_RS02840	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ND441_RS02850	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ND441_RS02855	COG0849	cell division
ND441_RS02860	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ND441_RS02885	COG0494	nUDIX hydrolase
ND441_RS02905	COG0516	GMP reductase activity
ND441_RS02910	COG1459	type II secretion system
ND441_RS02915	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ND441_RS02920	COG4969	Belongs to the N-Me-Phe pilin family
ND441_RS02935	COG3725	Membrane protein required for beta-lactamase induction
ND441_RS02940	COG1113	amino acid transport
ND441_RS02945	COG2186	Transcriptional regulator
ND441_RS02950	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
ND441_RS02955	COG0508	dehydrogenase complex catalyzes the overall conversion of
ND441_RS02960	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ND441_RS02970	COG1049	propionate catabolic process, 2-methylcitrate cycle
ND441_RS02975	COG3112	Uncharacterised protein family (UPF0231)
ND441_RS02990	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
ND441_RS03000	COG2132	Multicopper oxidase
ND441_RS03010	COG0288	reversible hydration of carbon dioxide
ND441_RS03015	COG1131	(ABC) transporter
ND441_RS03020	COG0842	Transport permease protein
ND441_RS03025	COG0726	polysaccharide deacetylase
ND441_RS03030	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
ND441_RS03035	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ND441_RS03040	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
ND441_RS03045	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ND441_RS03050	COG0617	tRNA 3'-terminal CCA addition
ND441_RS03065	COG1489	DNA binding
ND441_RS03070	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
ND441_RS03075	COG1643	Atp-dependent helicase
ND441_RS03080	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ND441_RS03085	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ND441_RS03095	COG0316	Belongs to the HesB IscA family
ND441_RS03100	COG2860	membrane
ND441_RS03110	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ND441_RS03115	COG0232	Belongs to the dGTPase family. Type 2 subfamily
ND441_RS03120	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ND441_RS03130	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ND441_RS03135	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ND441_RS03140	COG3956	TIGRFAM MazG family protein
ND441_RS03145	COG0504	CTP synthase activity
ND441_RS03155	COG0602	queuosine metabolic process
ND441_RS03160	COG0720	synthase
ND441_RS03165	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ND441_RS03175	COG0175	sulfate reduction
ND441_RS03190	COG2234	aminopeptidase activity
ND441_RS03195	COG1648	precorrin-2 dehydrogenase activity
ND441_RS03195	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ND441_RS03200	COG0175	sulfate reduction
ND441_RS03205	COG2895	sulfate adenylyltransferase (ATP) activity
ND441_RS03210	COG0529	Catalyzes the synthesis of activated sulfate
ND441_RS03220	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
ND441_RS03230	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
ND441_RS03235	COG0585	pseudouridine synthase activity
ND441_RS03240	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
ND441_RS03255	COG1388	LysM domain
ND441_RS03255	COG4942	peptidase
ND441_RS03260	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ND441_RS03265	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ND441_RS03335	COG0784	Response regulator, receiver
ND441_RS03335	COG2205	protein histidine kinase activity
ND441_RS03355	COG0741	lytic transglycosylase activity
ND441_RS03485	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ND441_RS03505	COG3397	chitin binding
ND441_RS03515	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ND441_RS03560	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ND441_RS03570	COG3031	protein transport across the cell outer membrane
ND441_RS03595	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
ND441_RS03595	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
ND441_RS03610	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
ND441_RS03615	COG2137	regulation of response to DNA damage stimulus
ND441_RS03620	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
ND441_RS03625	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ND441_RS03655	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ND441_RS03660	COG1238	metal cluster binding
ND441_RS03665	COG2918	glutathione biosynthetic process
ND441_RS03670	COG1854	S-ribosylhomocysteine lyase activity
ND441_RS03675	COG4536	flavin adenine dinucleotide binding
ND441_RS03680	COG4137	Cytochrome C assembly protein
ND441_RS03685	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ND441_RS03695	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ND441_RS03700	COG0336	Belongs to the RNA methyltransferase TrmD family
ND441_RS03705	COG0335	large ribosomal subunit rRNA binding
ND441_RS03710	COG3137	Salt-induced outer membrane protein
ND441_RS03715	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
ND441_RS03720	COG3279	Response regulator of the LytR AlgR family
ND441_RS03725	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ND441_RS03730	COG1605	Chorismate mutase
ND441_RS03730	COG0287	Prephenate dehydrogenase
ND441_RS03735	COG1605	Chorismate mutase
ND441_RS03735	COG0077	Prephenate dehydratase
ND441_RS03745	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
ND441_RS03750	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ND441_RS03755	COG0564	pseudouridine synthase activity
ND441_RS03760	COG1496	oxidoreductase activity
ND441_RS03765	COG0542	response to heat
ND441_RS03800	COG3021	interspecies interaction between organisms
ND441_RS03805	COG0741	lytic transglycosylase activity
ND441_RS03805	COG1388	LysM domain
ND441_RS03815	COG2226	methyltransferase
ND441_RS03825	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ND441_RS03835	COG1960	acyl-CoA dehydrogenase activity
ND441_RS03840	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
ND441_RS03845	COG0121	glutamine amidotransferase
ND441_RS03850	COG3034	peptidoglycan biosynthetic process
ND441_RS03860	COG1805	sodium ion transport
ND441_RS03865	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ND441_RS03870	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ND441_RS03875	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
ND441_RS03885	COG1477	protein flavinylation
ND441_RS03890	COG2991	Protein conserved in bacteria
ND441_RS03900	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ND441_RS03905	COG2195	Cleaves the N-terminal amino acid of tripeptides
ND441_RS03910	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
ND441_RS03915	COG1073	alpha beta
ND441_RS03930	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
ND441_RS03965	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
ND441_RS03985	COG4126	flavin adenine dinucleotide binding
ND441_RS03995	COG2974	May be involved in recombination
ND441_RS04000	COG1940	carbohydrate kinase activity
ND441_RS04005	COG0419	ATPase involved in DNA repair
ND441_RS04010	COG0420	3'-5' exonuclease activity
ND441_RS04015	COG0745	RESPONSE REGULATOR receiver
ND441_RS04020	COG5002	protein histidine kinase activity
ND441_RS04035	COG1113	amino acid transport
ND441_RS04040	COG0366	Alpha amylase catalytic
ND441_RS04045	COG0300	oxidoreductase activity
ND441_RS04050	COG0450	alkyl hydroperoxide reductase
ND441_RS04055	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
ND441_RS04070	COG1862	Preprotein translocase
ND441_RS04075	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ND441_RS04080	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ND441_RS04085	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
ND441_RS04090	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ND441_RS04090	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ND441_RS04095	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
ND441_RS04105	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ND441_RS04110	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ND441_RS04115	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
ND441_RS04120	COG0142	geranyltranstransferase activity
ND441_RS04155	COG0693	protein deglycase activity
ND441_RS04160	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ND441_RS04165	COG1666	GTP binding
ND441_RS04170	COG2814	Major facilitator Superfamily
ND441_RS04180	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ND441_RS04185	COG1845	cytochrome c oxidase, subunit III
ND441_RS04190	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ND441_RS04195	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ND441_RS04205	COG2223	nitrite transmembrane transporter activity
ND441_RS04210	COG3056	Lipoprotein
ND441_RS04215	COG0271	Belongs to the BolA IbaG family
ND441_RS04225	COG0740	serine-type endopeptidase activity
ND441_RS04230	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
ND441_RS04235	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ND441_RS04240	COG0776	regulation of translation
ND441_RS04245	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ND441_RS04250	COG1555	photosystem II stabilization
ND441_RS04255	COG0824	Thioesterase
ND441_RS04260	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
ND441_RS04265	COG4533	DNA binding
ND441_RS04280	COG1522	sequence-specific DNA binding
ND441_RS04285	COG1132	(ABC) transporter
ND441_RS04290	COG1132	(ABC) transporter
ND441_RS04295	COG0347	Belongs to the P(II) protein family
ND441_RS04300	COG0004	ammonium transporteR
ND441_RS04305	COG1946	Acyl-CoA thioesterase
ND441_RS04310	COG3695	enzyme binding
ND441_RS04335	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ND441_RS04340	COG0254	rRNA binding
ND441_RS04345	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ND441_RS04350	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ND441_RS04355	COG1309	transcriptional regulator
ND441_RS04360	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
ND441_RS04365	COG1196	nuclear chromosome segregation
ND441_RS04365	COG3264	Mechanosensitive ion channel
ND441_RS04380	COG2832	Protein of unknown function (DUF454)
ND441_RS04385	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ND441_RS04425	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ND441_RS04430	COG0326	Molecular chaperone. Has ATPase activity
ND441_RS04445	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
ND441_RS04450	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ND441_RS04455	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ND441_RS04455	COG4651	solute:proton antiporter activity
ND441_RS04460	COG0737	Belongs to the 5'-nucleotidase family
ND441_RS04465	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ND441_RS04470	COG3735	TraB family
ND441_RS04475	COG2217	Heavy metal translocating P-type atpase
ND441_RS04480	COG0789	Transcriptional regulator
ND441_RS04485	COG1585	Membrane protein implicated in regulation of membrane protease activity
ND441_RS04490	COG0330	HflC and HflK could
ND441_RS04495	COG3118	belongs to the thioredoxin family
ND441_RS04500	COG0300	oxidoreductase activity
ND441_RS04505	COG2755	lipolytic protein G-D-S-L family
ND441_RS04510	COG4181	ATPase activity
ND441_RS04515	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
ND441_RS04520	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ND441_RS04525	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
ND441_RS04530	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ND441_RS04535	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ND441_RS04560	COG3188	usher protein
ND441_RS04565	COG3121	Chaperone
ND441_RS04595	COG2501	S4 domain
ND441_RS04600	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
ND441_RS04615	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
ND441_RS04620	COG1393	Belongs to the ArsC family
ND441_RS04630	COG1022	Amp-dependent synthetase and ligase
ND441_RS04655	COG3038	cytochrome b561
ND441_RS04685	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ND441_RS04695	COG1215	transferase activity, transferring glycosyl groups
ND441_RS04715	COG3250	beta-galactosidase activity
ND441_RS04730	COG1309	transcriptional regulator
ND441_RS04760	COG2197	response regulator
ND441_RS04765	COG1278	Cold shock
ND441_RS04785	COG3706	GGDEF domain
ND441_RS04795	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ND441_RS04805	COG2921	Belongs to the UPF0250 family
ND441_RS04810	COG1686	Belongs to the peptidase S11 family
ND441_RS04815	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ND441_RS04820	COG0772	Belongs to the SEDS family
ND441_RS04825	COG0768	penicillin binding
ND441_RS04830	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
ND441_RS04835	COG0799	negative regulation of ribosome biogenesis
ND441_RS04840	COG0582	viral genome integration into host DNA
ND441_RS04900	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ND441_RS04965	COG0305	Participates in initiation and elongation during chromosome replication
ND441_RS04990	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ND441_RS05065	COG0616	signal peptide processing
ND441_RS05105	COG4386	tail sheath protein
ND441_RS05145	COG3299	homolog of phage Mu protein gp47
ND441_RS05160	COG5301	cellulose 1,4-beta-cellobiosidase activity
ND441_RS05170	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ND441_RS05175	COG1466	dna polymerase III delta subunit
ND441_RS05180	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
ND441_RS05190	COG2888	peptidyl-tyrosine sulfation
ND441_RS05195	COG1126	abc transporter atp-binding protein
ND441_RS05200	COG0765	amino acid transport
ND441_RS05205	COG0765	amino acid transport
ND441_RS05215	COG0815	Transfers the fatty acyl group on membrane lipoproteins
ND441_RS05220	COG4535	Mg2 and Co2 transporter CorC
ND441_RS05225	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
ND441_RS05230	COG1702	phosphate starvation-inducible protein PhoH
ND441_RS05235	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ND441_RS05240	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ND441_RS05275	COG0367	asparagine synthase
ND441_RS05280	COG0647	UMP catabolic process
ND441_RS05285	COG1846	Transcriptional regulator
ND441_RS05285	COG1940	carbohydrate kinase activity
ND441_RS05290	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ND441_RS05300	COG1263	PTS System
ND441_RS05300	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ND441_RS05300	COG2190	(PTS) system
ND441_RS05325	COG0735	belongs to the Fur family
ND441_RS05335	COG0840	transmembrane signaling receptor activity
ND441_RS05345	COG0596	Alpha beta hydrolase
ND441_RS05350	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
ND441_RS05355	COG0033	Phosphoglucomutase
ND441_RS05365	COG0745	RESPONSE REGULATOR receiver
ND441_RS05370	COG2205	protein histidine kinase activity
ND441_RS05375	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
ND441_RS05380	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ND441_RS05400	COG3272	Protein of unknown function (DUF1722)
ND441_RS05405	COG0415	Belongs to the DNA photolyase family
ND441_RS05410	COG5212	phosphodiesterase
ND441_RS05415	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ND441_RS05420	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
ND441_RS05425	COG1984	allophanate hydrolase subunit 2
ND441_RS05430	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
ND441_RS05465	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ND441_RS05470	COG1053	succinate dehydrogenase
ND441_RS05475	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ND441_RS05480	COG0567	Dehydrogenase, E1 component
ND441_RS05485	COG0508	dehydrogenase complex catalyzes the overall conversion of
ND441_RS05490	COG0045	succinate-CoA ligase (ADP-forming) activity
ND441_RS05495	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ND441_RS05500	COG0737	Belongs to the 5'-nucleotidase family
ND441_RS05505	COG1271	oxidase subunit
ND441_RS05510	COG1294	oxidase, subunit
ND441_RS05515	COG4890	Cyd operon protein YbgT
ND441_RS05520	COG3790	cyd operon protein YbgE
ND441_RS05525	COG0824	Thioesterase
ND441_RS05530	COG0811	peptide transport
ND441_RS05535	COG0848	biopolymer transport protein
ND441_RS05540	COG3064	Membrane
ND441_RS05540	COG3064	Membrane
ND441_RS05545	COG0823	Involved in the tonB-independent uptake of proteins
ND441_RS05550	COG2885	chlorophyll binding
ND441_RS05555	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
ND441_RS05595	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
ND441_RS05605	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ND441_RS05605	COG2205	protein histidine kinase activity
ND441_RS05615	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ND441_RS05620	COG0588	phosphoglycerate mutase activity
ND441_RS05630	COG2017	converts alpha-aldose to the beta-anomer
ND441_RS05640	COG1085	galactose-1-phosphate uridylyltransferase
ND441_RS05645	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ND441_RS05660	COG2005	Transcriptional regulator
ND441_RS05660	COG3585	molybdate ion transport
ND441_RS05670	COG0725	ABC transporter, periplasmic molybdate-binding protein
ND441_RS05675	COG4149	molybdate abc transporter
ND441_RS05685	COG0561	phosphatase activity
ND441_RS05690	COG2706	6-phosphogluconolactonase activity
ND441_RS05705	COG0156	8-amino-7-oxononanoate synthase activity
ND441_RS05710	COG2226	methyltransferase
ND441_RS05725	COG0556	nucleotide-excision repair
ND441_RS05730	COG4628	conserved protein (DUF2132)
ND441_RS05745	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ND441_RS05750	COG1120	ATPase activity
ND441_RS05755	COG0391	Required for morphogenesis under gluconeogenic growth conditions
ND441_RS05760	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ND441_RS05770	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ND441_RS05775	COG0314	molybdopterin synthase activity
ND441_RS05780	COG0670	Belongs to the BI1 family
ND441_RS05785	COG0842	Transport permease protein
ND441_RS05790	COG0842	Transport permease protein
ND441_RS05795	COG1131	(ABC) transporter
ND441_RS05800	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ND441_RS05805	COG1309	transcriptional regulator
ND441_RS05810	COG0513	Belongs to the DEAD box helicase family
ND441_RS05815	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ND441_RS05825	COG1686	Belongs to the peptidase S11 family
ND441_RS05830	COG0277	FAD linked oxidase domain protein
ND441_RS05850	COG2261	transglycosylase associated protein
ND441_RS05860	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
ND441_RS05870	COG3639	organic phosphonate transmembrane transporter activity
ND441_RS05875	COG4807	Protein conserved in bacteria
ND441_RS05880	COG2897	thiosulfate sulfurtransferase activity
ND441_RS05885	COG1732	Glycine betaine
ND441_RS05890	COG1174	glycine betaine transport
ND441_RS05895	COG1125	glycine betaine transport
ND441_RS05900	COG1174	glycine betaine transport
ND441_RS05905	COG0531	amino acid
ND441_RS05910	COG1982	Orn Lys Arg decarboxylase major
ND441_RS05920	COG0697	spore germination
ND441_RS05935	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ND441_RS05940	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
ND441_RS05945	COG1126	abc transporter atp-binding protein
ND441_RS05950	COG0765	amino acid transport
ND441_RS05955	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ND441_RS05975	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
ND441_RS05980	COG2239	Acts as a magnesium transporter
ND441_RS05985	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
ND441_RS05990	COG0488	(ABC) transporter
ND441_RS05995	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ND441_RS06000	COG0303	'Molybdopterin
ND441_RS06020	COG0583	DNA-binding transcription factor activity
ND441_RS06025	COG0477	Major facilitator Superfamily
ND441_RS06030	COG0302	gtp cyclohydrolase
ND441_RS06035	COG2311	Membrane
ND441_RS06060	COG2949	membrane
ND441_RS06065	COG0281	malic enzyme
ND441_RS06075	COG0583	DNA-binding transcription factor activity
ND441_RS06085	COG1346	cytolysis
ND441_RS06090	COG1380	Effector of murein hydrolase LrgA
ND441_RS06100	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ND441_RS06100	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ND441_RS06105	COG0489	protein tyrosine kinase activity
ND441_RS06110	COG0572	uridine kinase
ND441_RS06115	COG0717	Belongs to the dCTP deaminase family
ND441_RS06120	COG2982	Protein involved in outer membrane biogenesis
ND441_RS06125	COG3069	C4-dicarboxylate transmembrane transporter activity
ND441_RS06130	COG1253	flavin adenine dinucleotide binding
ND441_RS06135	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ND441_RS06140	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ND441_RS06145	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
ND441_RS06155	COG0140	phosphoribosyl-ATP diphosphatase activity
ND441_RS06155	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ND441_RS06165	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
ND441_RS06175	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
ND441_RS06175	COG0131	Imidazoleglycerol-phosphate dehydratase
ND441_RS06180	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ND441_RS06185	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ND441_RS06200	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ND441_RS06205	COG0625	glutathione transferase activity
ND441_RS06220	COG0626	cystathionine gamma-synthase activity
ND441_RS06230	COG1686	Belongs to the peptidase S11 family
ND441_RS06235	COG1760	l-serine dehydratase
ND441_RS06240	COG0814	amino acid
ND441_RS06245	COG1349	DNA-binding transcription factor activity
ND441_RS06255	COG0671	phosphoesterase, PA-phosphatase related
ND441_RS06265	COG0569	domain protein
ND441_RS06265	COG2985	domain, Protein
ND441_RS06285	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
ND441_RS06290	COG3842	ATPase activity
ND441_RS06295	COG1176	ABC-type spermidine putrescine transport system, permease component I
ND441_RS06300	COG1177	transmembrane transport
ND441_RS06315	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ND441_RS06320	COG4160	amino acid transport
ND441_RS06325	COG4215	(ABC) transporter
ND441_RS06330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ND441_RS06335	COG1126	abc transporter atp-binding protein
ND441_RS06345	COG0393	Putative heavy-metal-binding
ND441_RS06350	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ND441_RS06355	COG0702	epimerase
ND441_RS06360	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
ND441_RS06365	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ND441_RS06370	COG1151	hydroxylamine reductase activity
ND441_RS06375	COG2431	L-lysine efflux transmembrane transporter activity
ND441_RS06380	COG3593	DNA synthesis involved in DNA repair
ND441_RS06385	COG2990	Protein conserved in bacteria
ND441_RS06390	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ND441_RS06400	COG1278	Cold shock
ND441_RS06405	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ND441_RS06410	COG0542	response to heat
ND441_RS06415	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ND441_RS06425	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ND441_RS06435	COG0492	ferredoxin-NADP+ reductase activity
ND441_RS06440	COG1522	sequence-specific DNA binding
ND441_RS06445	COG1674	ftsk spoiiie
ND441_RS06445	COG3107	peptidoglycan biosynthetic process
ND441_RS06450	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ND441_RS06455	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ND441_RS06460	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
ND441_RS06465	COG2814	Major facilitator Superfamily
ND441_RS06470	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
ND441_RS06475	COG1882	Formate acetyltransferase
ND441_RS06480	COG2116	formate transmembrane transporter activity
ND441_RS06485	COG1944	ATP diphosphatase activity
ND441_RS06490	COG0252	asparaginase activity
ND441_RS06500	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ND441_RS06510	COG0539	negative regulation of cytoplasmic translation
ND441_RS06520	COG0658	competence protein
ND441_RS06520	COG2333	competence protein COMEC
ND441_RS06530	COG1663	tetraacyldisaccharide 4'-kinase activity
ND441_RS06535	COG5383	Protein conserved in bacteria
ND441_RS06545	COG1278	Cold shock
ND441_RS06550	COG2835	tetraacyldisaccharide 4'-kinase activity
ND441_RS06555	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
ND441_RS06560	COG3173	Aminoglycoside phosphotransferase
ND441_RS06565	COG1434	Gram-negative-bacterium-type cell wall biogenesis
ND441_RS06570	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ND441_RS06575	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
ND441_RS06585	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
ND441_RS06590	COG2989	Protein conserved in bacteria
ND441_RS06595	COG3108	Peptidase M15
ND441_RS06600	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ND441_RS06605	COG1448	Aminotransferase
ND441_RS06620	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
ND441_RS06625	COG0308	aminopeptidase N
ND441_RS06630	COG0167	dihydroorotate dehydrogenase activity
ND441_RS06640	COG3217	Mosc domain protein beta barrel domain protein
ND441_RS06640	COG0633	Ferredoxin
ND441_RS06645	COG0116	Belongs to the methyltransferase superfamily
ND441_RS06645	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ND441_RS06650	COG0488	(ABC) transporter
ND441_RS06655	COG2995	paraquat-inducible protein a
ND441_RS06660	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ND441_RS06660	COG3008	intermembrane lipid transfer
ND441_RS06665	COG3009	Protein conserved in bacteria
ND441_RS06670	COG3130	regulation of translation
ND441_RS06675	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ND441_RS06680	COG1067	ATP-dependent peptidase activity
ND441_RS06685	COG3120	sequence-specific DNA binding
ND441_RS06695	COG5404	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division
ND441_RS06700	COG3070	regulator of competence-specific genes
ND441_RS06705	COG1289	transmembrane transporter activity
ND441_RS06710	COG3304	Inner membrane component domain
ND441_RS06715	COG0210	DNA helicase
ND441_RS06720	COG1803	Methylglyoxal synthase
ND441_RS06730	COG1832	CoA-binding protein
ND441_RS06735	COG3785	DNA binding
ND441_RS06740	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ND441_RS06745	COG1254	Belongs to the acylphosphatase family
ND441_RS06750	COG2920	part of a sulfur-relay system
ND441_RS06760	COG0288	reversible hydration of carbon dioxide
ND441_RS06780	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ND441_RS06785	COG2943	transferase activity, transferring hexosyl groups
ND441_RS06800	COG0675	Transposase, IS605 OrfB family
ND441_RS06815	COG1560	Kdo2-lipid A biosynthetic process
ND441_RS06825	COG0628	permease
ND441_RS06850	COG0418	dihydroorotase activity
ND441_RS06855	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
ND441_RS06865	COG1530	ribonuclease E activity
ND441_RS06870	COG0564	pseudouridine synthase activity
ND441_RS06875	COG0424	maF-like protein
ND441_RS06880	COG1399	metal-binding, possibly nucleic acid-binding protein
ND441_RS06885	COG0333	Belongs to the bacterial ribosomal protein bL32 family
ND441_RS06895	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ND441_RS06900	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ND441_RS06910	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ND441_RS06915	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ND441_RS06920	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ND441_RS06925	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ND441_RS06930	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
ND441_RS06935	COG0470	DNA polymerase III
ND441_RS06940	COG0084	hydrolase, TatD family'
ND441_RS06945	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ND441_RS06945	COG1263	PTS System
ND441_RS06950	COG0537	adenosine 5'-monophosphoramidase activity
ND441_RS06955	COG5633	Lipoprotein
ND441_RS06960	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
ND441_RS06975	COG3150	esterase
ND441_RS06980	COG1252	NADH dehydrogenase
ND441_RS06985	COG3134	Outer membrane lipoprotein
ND441_RS06990	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ND441_RS06995	COG4591	ABC-type transport system involved in lipoprotein release permease component
ND441_RS07005	COG4591	ABC-type transport system involved in lipoprotein release permease component
ND441_RS07025	COG2850	peptidyl-arginine hydroxylation
ND441_RS07030	COG2205	protein histidine kinase activity
ND441_RS07035	COG0745	RESPONSE REGULATOR receiver
ND441_RS07045	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ND441_RS07050	COG2915	High frequency lysogenization protein hflD homolog
ND441_RS07055	COG0482	sulfurtransferase activity
ND441_RS07065	COG1187	pseudouridine synthase activity
ND441_RS07070	COG0538	isocitrate dehydrogenase activity
ND441_RS07075	COG2771	luxR family
ND441_RS07080	COG3916	Acyl-homoserine-lactone synthase
ND441_RS07085	COG2723	6-phospho-beta-galactosidase activity
ND441_RS07095	COG0339	signal peptide processing
ND441_RS07100	COG0840	transmembrane signaling receptor activity
ND441_RS07125	COG0675	Transposase, IS605 OrfB family
ND441_RS07135	COG4565	transcriptional regulatory protein
ND441_RS07140	COG3290	protein histidine kinase activity
ND441_RS07145	COG0471	metal ion transport
ND441_RS07185	COG4977	sequence-specific DNA binding
ND441_RS07190	COG1702	phosphate starvation-inducible protein PhoH
ND441_RS07195	COG0387	Pfam Sodium calcium exchanger
ND441_RS07200	COG2375	cellular response to nickel ion
ND441_RS07205	COG3850	Histidine kinase
ND441_RS07215	COG1294	oxidase, subunit
ND441_RS07220	COG1271	oxidase subunit
ND441_RS07225	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ND441_RS07230	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ND441_RS07235	COG3138	arginine N-succinyltransferase
ND441_RS07245	COG3724	N-succinylarginine dihydrolase activity
ND441_RS07265	COG1228	amidohydrolase
ND441_RS07275	COG0402	S-adenosylhomocysteine deaminase activity
ND441_RS07295	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
ND441_RS07300	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
ND441_RS07305	COG3383	formate dehydrogenase (NAD+) activity
ND441_RS07310	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
ND441_RS07315	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
ND441_RS07325	COG3260	NADH ubiquinone oxidoreductase 20
ND441_RS07330	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ND441_RS07335	COG3261	NADH dehydrogenase
ND441_RS07335	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
ND441_RS07340	COG0650	Formate hydrogenlyase subunit 4
ND441_RS07345	COG0651	ATP synthesis coupled electron transport
ND441_RS07350	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
ND441_RS07360	COG0375	protein maturation
ND441_RS07365	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
ND441_RS07370	COG0298	carbon dioxide binding
ND441_RS07375	COG0409	Hydrogenase expression formation protein
ND441_RS07380	COG0309	Hydrogenase expression formation protein (HypE)
ND441_RS07415	COG3708	Transcriptional regulator
ND441_RS07415	COG2207	Transcriptional regulator
ND441_RS07420	COG0012	GTP binding
ND441_RS07430	COG0193	aminoacyl-tRNA hydrolase activity
ND441_RS07440	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ND441_RS07450	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
ND441_RS07455	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
ND441_RS07460	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
ND441_RS07465	COG2890	protein-(glutamine-N5) methyltransferase activity
ND441_RS07480	COG2877	3-deoxy-8-phosphooctulonate synthase activity
ND441_RS07485	COG0659	secondary active sulfate transmembrane transporter activity
ND441_RS07490	COG3706	GGDEF domain
ND441_RS07515	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ND441_RS07525	COG3381	protein complex oligomerization
ND441_RS07545	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ND441_RS07555	COG0673	inositol 2-dehydrogenase activity
ND441_RS07560	COG0728	peptidoglycan biosynthetic process
ND441_RS07585	COG3102	Protein conserved in bacteria
ND441_RS07590	COG3142	Participates in the control of copper homeostasis
ND441_RS07605	COG3788	relative of glutathione S-transferase, MAPEG superfamily
ND441_RS07610	COG1801	Protein of unknown function DUF72
ND441_RS07620	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
ND441_RS07625	COG0494	nUDIX hydrolase
ND441_RS07635	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
ND441_RS07645	COG2255	four-way junction helicase activity
ND441_RS07650	COG3104	oligopeptide transport
ND441_RS07655	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ND441_RS07660	COG1121	(ABC) transporter
ND441_RS07665	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
ND441_RS07670	COG0739	heme binding
ND441_RS07675	COG1560	Kdo2-lipid A biosynthetic process
ND441_RS07680	COG0469	pyruvate kinase activity
ND441_RS07685	COG1737	Transcriptional regulator
ND441_RS07690	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ND441_RS07695	COG0800	Aldolase
ND441_RS07705	COG2076	Multidrug Resistance protein
ND441_RS07710	COG0251	oxidation-reduction process
ND441_RS07715	COG1199	ATP-dependent helicase activity
ND441_RS07720	COG1214	PFAM Peptidase M22, glycoprotease
ND441_RS07725	COG3065	identical protein binding
ND441_RS07730	COG0318	PFAM AMP-dependent synthetase and ligase
ND441_RS07735	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
ND441_RS07740	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ND441_RS07745	COG2894	cell division
ND441_RS07750	COG0850	regulation of cytokinetic process
ND441_RS07755	COG3100	YcgL domain-containing protein
ND441_RS07760	COG0179	Fumarylacetoacetate (FAA) hydrolase
ND441_RS07765	COG2983	Belongs to the UPF0260 family
ND441_RS07785	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ND441_RS07795	COG2719	SpoVR family
ND441_RS07800	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ND441_RS07805	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ND441_RS07810	COG2814	Major facilitator Superfamily
ND441_RS07820	COG2200	EAL domain
ND441_RS07820	COG2202	Pas domain
ND441_RS07820	COG2199	diguanylate cyclase activity
ND441_RS07840	COG2718	Belongs to the UPF0229 family
ND441_RS07845	COG2766	serine protein kinase
ND441_RS07855	COG3713	MltA-interacting MipA family protein
ND441_RS07860	COG2194	sulfuric ester hydrolase activity
ND441_RS07875	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ND441_RS07880	COG3139	Protein of unknown function (DUF1315)
ND441_RS07885	COG1335	isochorismatase
ND441_RS07890	COG0252	asparaginase activity
ND441_RS07895	COG0616	signal peptide processing
ND441_RS07900	COG0778	Nitroreductase
ND441_RS07910	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ND441_RS07920	COG0494	nUDIX hydrolase
ND441_RS07925	COG0708	Exodeoxyribonuclease III
ND441_RS07955	COG0788	formyltetrahydrofolate deformylase activity
ND441_RS07965	COG1752	Esterase of the alpha-beta hydrolase superfamily
ND441_RS07970	COG0745	RESPONSE REGULATOR receiver
ND441_RS07990	COG1454	alcohol dehydrogenase
ND441_RS07990	COG1012	belongs to the aldehyde dehydrogenase family
ND441_RS08000	COG2095	MarC family integral membrane protein
ND441_RS08005	COG4166	transmembrane transport
ND441_RS08020	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ND441_RS08035	COG3099	Belongs to the UPF0263 family
ND441_RS08040	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ND441_RS08065	COG2350	Protein conserved in bacteria
ND441_RS08080	COG3710	Transcriptional regulator
ND441_RS08115	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
ND441_RS08140	COG0727	PFAM Uncharacterised protein family (UPF0153)
ND441_RS08145	COG3047	cAMP biosynthetic process
ND441_RS08160	COG0133	tryptophan synthase activity
ND441_RS08165	COG0134	indole-3-glycerol-phosphate synthase activity
ND441_RS08165	COG0135	phosphoribosylanthranilate isomerase activity
ND441_RS08175	COG0512	Glutamine amidotransferase of anthranilate synthase
ND441_RS08185	COG0613	PHP domain protein
ND441_RS08190	COG0009	L-threonylcarbamoyladenylate synthase
ND441_RS08210	COG1187	pseudouridine synthase activity
ND441_RS08220	COG1028	Short-chain dehydrogenase reductase Sdr
ND441_RS08225	COG0616	signal peptide processing
ND441_RS08240	COG0583	DNA-binding transcription factor activity
ND441_RS08255	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ND441_RS08265	COG0671	phosphoesterase, PA-phosphatase related
ND441_RS08270	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
ND441_RS08275	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ND441_RS08295	COG0023	Translation Initiation Factor
ND441_RS08305	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ND441_RS08310	COG5002	protein histidine kinase activity
ND441_RS08310	COG5001	Diguanylate cyclase
ND441_RS08310	COG3447	MASE1 domain protein
ND441_RS08315	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
ND441_RS08320	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ND441_RS08330	COG4659	FMN binding
ND441_RS08340	COG3708	Transcriptional regulator
ND441_RS08340	COG2207	Transcriptional regulator
ND441_RS08355	COG4657	Part of a membrane complex involved in electron transport
ND441_RS08365	COG2759	Belongs to the formate--tetrahydrofolate ligase family
ND441_RS08375	COG0673	inositol 2-dehydrogenase activity
ND441_RS08380	COG0385	Bile acid
ND441_RS08385	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ND441_RS08390	COG5339	Protein conserved in bacteria
ND441_RS08395	COG1482	cell wall glycoprotein biosynthetic process
ND441_RS08400	COG0114	fumarate hydratase activity
ND441_RS08410	COG1940	carbohydrate kinase activity
ND441_RS08415	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
ND441_RS08435	COG1742	UPF0060 membrane protein
ND441_RS08440	COG4221	oxidoreductase activity
ND441_RS08445	COG3023	N-Acetylmuramoyl-L-alanine amidase
ND441_RS08465	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ND441_RS08505	COG1011	Hydrolase
ND441_RS08515	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
ND441_RS08520	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ND441_RS08525	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ND441_RS08530	COG0589	response to stress
ND441_RS08560	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
ND441_RS08565	COG3623	hexulose-6-phosphate isomerase
ND441_RS08570	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ND441_RS08575	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ND441_RS08585	COG0531	amino acid
ND441_RS08595	COG0745	RESPONSE REGULATOR receiver
ND441_RS08600	COG2205	protein histidine kinase activity
ND441_RS08615	COG2207	Transcriptional regulator
ND441_RS08620	COG1881	PFAM PEBP family protein
ND441_RS08630	COG3591	Belongs to the peptidase S1B family
ND441_RS08635	COG1643	Atp-dependent helicase
ND441_RS08640	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
ND441_RS08645	COG3784	Protein of unknown function (DUF1318)
ND441_RS08660	COG2911	Protein conserved in bacteria
ND441_RS08665	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ND441_RS08670	COG3187	Heat shock protein
ND441_RS08675	COG3042	response to heat
ND441_RS08680	COG1285	pathogenesis
ND441_RS08690	COG1013	pyruvate-flavodoxin oxidoreductase activity
ND441_RS08690	COG0674	pyruvate-flavodoxin oxidoreductase activity
ND441_RS08690	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ND441_RS08690	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
ND441_RS08705	COG4166	transmembrane transport
ND441_RS08710	COG2866	Carboxypeptidase
ND441_RS08715	COG4948	Mandelate Racemase Muconate Lactonizing
ND441_RS08720	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
ND441_RS08730	COG5642	Protein of unknown function (DUF2384)
ND441_RS08735	COG5654	RES domain protein
ND441_RS08740	COG3768	UPF0283 membrane protein
ND441_RS08745	COG3106	COG3106 Predicted ATPase
ND441_RS08755	COG1983	PspC domain protein
ND441_RS08765	COG1842	Phage shock protein A
ND441_RS08770	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
ND441_RS08785	COG4166	transmembrane transport
ND441_RS08795	COG4171	peptide transport system, permease
ND441_RS08800	COG4172	Belongs to the ABC transporter superfamily
ND441_RS08805	COG4172	Belongs to the ABC transporter superfamily
ND441_RS08815	COG3104	oligopeptide transport
ND441_RS08825	COG0484	heat shock protein binding
ND441_RS08870	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
ND441_RS08875	COG3133	Outer membrane lipoprotein
ND441_RS08880	COG1846	Transcriptional regulator
ND441_RS08890	COG4989	oxidoreductase activity
ND441_RS08895	COG3313	Fe-S protein
ND441_RS08900	COG2194	sulfuric ester hydrolase activity
ND441_RS08905	COG1309	transcriptional regulator
ND441_RS08910	COG1902	pentaerythritol trinitrate reductase activity
ND441_RS08925	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ND441_RS08930	COG0791	NLP P60 protein
ND441_RS08935	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ND441_RS08945	COG1609	Transcriptional regulator
ND441_RS08950	COG0583	DNA-binding transcription factor activity
ND441_RS08955	COG2814	Major facilitator Superfamily
ND441_RS08960	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ND441_RS08965	COG0307	riboflavin synthase, alpha
ND441_RS09000	COG1376	ErfK ybiS ycfS ynhG family protein
ND441_RS09000	COG1388	LysM domain
ND441_RS09005	COG2166	iron-sulfur cluster assembly
ND441_RS09015	COG0719	Fe-S assembly protein
ND441_RS09020	COG0396	ATPase activity
ND441_RS09025	COG0719	Fe-S assembly protein
ND441_RS09030	COG0316	Belongs to the HesB IscA family
ND441_RS09035	COG2050	protein possibly involved in aromatic compounds catabolism
ND441_RS09040	COG0247	lactate metabolic process
ND441_RS09040	COG0277	FAD linked oxidase domain protein
ND441_RS09045	COG0628	permease
ND441_RS09055	COG0574	Belongs to the PEP-utilizing enzyme family
ND441_RS09055	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ND441_RS09060	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
ND441_RS09065	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ND441_RS09075	COG4771	TonB-dependent receptor
ND441_RS09080	COG3720	iron ion transport
ND441_RS09085	COG4558	Periplasmic binding protein
ND441_RS09090	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ND441_RS09095	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
ND441_RS09105	COG0095	Lipoate-protein ligase
ND441_RS09110	COG0791	NLP P60 protein
ND441_RS09115	COG2076	Multidrug Resistance protein
ND441_RS09120	COG2076	Multidrug Resistance protein
ND441_RS09125	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ND441_RS09140	COG0463	Glycosyl transferase, family 2
ND441_RS09145	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ND441_RS09155	COG4139	cobalamin transport
ND441_RS09200	COG2184	nucleotidyltransferase activity
ND441_RS09215	COG2314	TM2 domain
ND441_RS09220	COG0776	regulation of translation
ND441_RS09290	COG0803	Belongs to the bacterial solute-binding protein 9 family
ND441_RS09295	COG1121	(ABC) transporter
ND441_RS09300	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ND441_RS09305	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ND441_RS09310	COG3001	Fructosamine kinase
ND441_RS09320	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ND441_RS09325	COG1988	membrane-bound metal-dependent
ND441_RS09330	COG1823	symporter activity
ND441_RS09335	COG3023	N-Acetylmuramoyl-L-alanine amidase
ND441_RS09345	COG2814	Major facilitator Superfamily
ND441_RS09355	COG0501	Belongs to the peptidase M48B family
ND441_RS09360	COG0793	Belongs to the peptidase S41A family
ND441_RS09370	COG1956	GAF domain-containing protein
ND441_RS09375	COG2995	paraquat-inducible protein a
ND441_RS09380	COG3008	intermembrane lipid transfer
ND441_RS09385	COG2203	Gaf domain
ND441_RS09385	COG4251	negative regulation of phosphorylation
ND441_RS09385	COG5001	Diguanylate cyclase
ND441_RS09385	COG3706	GGDEF domain
ND441_RS09595	COG3772	lysozyme
ND441_RS09645	COG1178	ABC-type Fe3 transport system permease component
ND441_RS09645	COG1674	ftsk spoiiie
ND441_RS09765	COG1276	copper resistance
ND441_RS09770	COG2372	response to copper ion
ND441_RS09775	COG1528	Iron-storage protein
ND441_RS09795	COG1770	oligopeptidase
ND441_RS09805	COG3097	Belongs to the UPF0267 family
ND441_RS09810	COG3141	response to X-ray
ND441_RS09815	COG0513	Belongs to the DEAD box helicase family
ND441_RS09835	COG0494	nUDIX hydrolase
ND441_RS09840	COG1760	l-serine dehydratase
ND441_RS09845	COG1253	flavin adenine dinucleotide binding
ND441_RS09850	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ND441_RS09850	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
ND441_RS09855	COG3715	PTS system
ND441_RS09860	COG3716	PTS system mannose fructose sorbose family IID component
ND441_RS09865	COG4811	Protein of unknown function (DUF986)
ND441_RS09870	COG1971	Probably functions as a manganese efflux pump
ND441_RS09890	COG1960	acyl-CoA dehydrogenase activity
ND441_RS09900	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
ND441_RS09930	COG2226	methyltransferase
ND441_RS09935	COG0768	penicillin binding
ND441_RS09940	COG1496	oxidoreductase activity
ND441_RS09960	COG1113	amino acid transport
ND441_RS09995	COG2207	Transcriptional regulator
ND441_RS10015	COG1132	(ABC) transporter
ND441_RS10025	COG5001	Diguanylate cyclase
ND441_RS10025	COG2203	Gaf domain
ND441_RS10025	COG3706	GGDEF domain
ND441_RS10025	COG4251	negative regulation of phosphorylation
ND441_RS10045	COG1181	Belongs to the D-alanine--D-alanine ligase family
ND441_RS10065	COG1278	Cold shock
ND441_RS10070	COG1278	Cold shock
ND441_RS10075	COG1278	Cold shock
ND441_RS10090	COG1917	Cupin 2, conserved barrel domain protein
ND441_RS10090	COG2169	Transcriptional regulator
ND441_RS10095	COG1447	Phosphotransferase system cellobiose-specific component IIA
ND441_RS10100	COG2723	6-phospho-beta-galactosidase activity
ND441_RS10105	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ND441_RS10110	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ND441_RS10115	COG1187	pseudouridine synthase activity
ND441_RS10125	COG3122	Protein conserved in bacteria
ND441_RS10130	COG1757	Na H antiporter
ND441_RS10145	COG2235	arginine
ND441_RS10160	COG0076	glutamate decarboxylase activity
ND441_RS10165	COG0531	amino acid
ND441_RS10200	COG2153	protein acetylation
ND441_RS10205	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
ND441_RS10235	COG0840	transmembrane signaling receptor activity
ND441_RS10240	COG2801	Transposase and inactivated derivatives
ND441_RS10260	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ND441_RS10265	COG0322	excinuclease ABC activity
ND441_RS10270	COG2197	response regulator
ND441_RS10295	COG1113	amino acid transport
ND441_RS10305	COG0531	amino acid
ND441_RS10310	COG3710	Transcriptional regulator
ND441_RS10315	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ND441_RS10320	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ND441_RS10320	COG0506	proline dehydrogenase activity
ND441_RS10320	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ND441_RS10325	COG1126	abc transporter atp-binding protein
ND441_RS10330	COG0765	amino acid transport
ND441_RS10335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ND441_RS10340	COG2515	1-aminocyclopropane-1-carboxylate deaminase
ND441_RS10350	COG1191	sigma factor activity
ND441_RS10390	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
ND441_RS10395	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ND441_RS10410	COG1677	Flagellar hook-basal body complex protein FliE
ND441_RS10420	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ND441_RS10425	COG1317	bacterial-type flagellum organization
ND441_RS10430	COG1157	protein secretion by the type III secretion system
ND441_RS10445	COG1580	Controls the rotational direction of flagella during chemotaxis
ND441_RS10525	COG1558	bacterial-type flagellum-dependent cell motility
ND441_RS10530	COG1815	bacterial-type flagellum-dependent cell motility
ND441_RS10540	COG2747	anti-sigma28 factor FlgM
ND441_RS10545	COG3418	PFAM FlgN family protein
ND441_RS10555	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ND441_RS10560	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ND441_RS10565	COG4935	Belongs to the peptidase S8 family
ND441_RS10565	COG1404	Belongs to the peptidase S8 family
ND441_RS10570	COG2197	response regulator
ND441_RS10585	COG3188	usher protein
ND441_RS10590	COG3121	Chaperone
ND441_RS10600	COG3539	Fimbrial protein
ND441_RS10630	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
ND441_RS10635	COG0745	RESPONSE REGULATOR receiver
ND441_RS10645	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ND441_RS10650	COG0840	transmembrane signaling receptor activity
ND441_RS10655	COG0840	transmembrane signaling receptor activity
ND441_RS10660	COG0835	chemotaxis
ND441_RS10665	COG0643	Histidine kinase
ND441_RS10665	COG2198	Histidine kinase
ND441_RS10670	COG1360	Flagellar Motor Protein
ND441_RS10690	COG0589	response to stress
ND441_RS10695	COG1285	pathogenesis
ND441_RS10700	COG0840	transmembrane signaling receptor activity
ND441_RS10720	COG1609	Transcriptional regulator
ND441_RS10730	COG3321	synthase
ND441_RS10730	COG1028	Short-chain dehydrogenase reductase Sdr
ND441_RS10730	COG0604	alcohol dehydrogenase
ND441_RS10765	COG0582	viral genome integration into host DNA
ND441_RS10780	COG3423	Transcriptional regulator
ND441_RS10815	COG3451	type IV secretory pathway VirB4
ND441_RS10835	COG3736	Type IV secretory pathway, component VirB8
ND441_RS10850	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
ND441_RS10865	COG4227	nucleotidyltransferase activity
ND441_RS10925	COG0471	metal ion transport
ND441_RS10940	COG3051	citrate lyase alpha subunit
ND441_RS10945	COG2301	Belongs to the HpcH HpaI aldolase family
ND441_RS10950	COG3052	prosthetic group binding
ND441_RS10955	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
ND441_RS10960	COG3290	protein histidine kinase activity
ND441_RS10965	COG4565	transcriptional regulatory protein
ND441_RS10980	COG2271	Major facilitator Superfamily
ND441_RS10985	COG1840	ABC-type Fe3 transport system, periplasmic component
ND441_RS10995	COG3842	ATPase activity
ND441_RS11015	COG1289	transmembrane transporter activity
ND441_RS11025	COG2925	Exonuclease
ND441_RS11030	COG0531	amino acid
ND441_RS11035	COG4771	TonB-dependent receptor
ND441_RS11045	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ND441_RS11055	COG0833	amino acid
ND441_RS11060	COG0583	DNA-binding transcription factor activity
ND441_RS11070	COG2855	membrane
ND441_RS11075	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
ND441_RS11080	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ND441_RS11080	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ND441_RS11080	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
ND441_RS11085	COG1105	Belongs to the carbohydrate kinase PfkB family
ND441_RS11100	COG3005	denitrification pathway
ND441_RS11105	COG0243	molybdopterin cofactor binding
ND441_RS11125	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ND441_RS11135	COG0246	Mannitol dehydrogenase
ND441_RS11145	COG0523	cobalamin synthesis protein
ND441_RS11150	COG0671	phosphoesterase, PA-phosphatase related
ND441_RS11155	COG0791	NLP P60 protein
ND441_RS11160	COG2200	EAL domain
ND441_RS11165	COG4166	transmembrane transport
ND441_RS11170	COG4174	ABC transporter (Permease)
ND441_RS11175	COG4239	(ABC) transporter, permease
ND441_RS11180	COG4172	Belongs to the ABC transporter superfamily
ND441_RS11190	COG2814	Major facilitator Superfamily
ND441_RS11195	COG1187	pseudouridine synthase activity
ND441_RS11200	COG1061	Type III restriction enzyme res subunit
ND441_RS11215	COG3082	Protein of unknown function (DUF1414)
ND441_RS11220	COG3083	sulfuric ester hydrolase activity
ND441_RS11245	COG3778	Protein conserved in bacteria
ND441_RS11250	COG3299	homolog of phage Mu protein gp47
ND441_RS11295	COG4386	tail sheath protein
ND441_RS11345	COG4626	Terminase
ND441_RS11345	COG1802	Transcriptional regulator
ND441_RS11370	COG1876	peptidase activity
ND441_RS11400	COG2815	serine threonine protein kinase
ND441_RS11400	COG0515	serine threonine protein kinase
ND441_RS11415	COG1403	HNH endonuclease
ND441_RS11430	COG4725	Belongs to the MT-A70-like family
ND441_RS11435	COG1802	Transcriptional regulator
ND441_RS11435	COG4626	Terminase
ND441_RS11470	COG5532	Uncharacterized conserved protein (DUF2303)
ND441_RS11475	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
ND441_RS11525	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ND441_RS11530	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ND441_RS11550	COG2223	nitrite transmembrane transporter activity
ND441_RS11555	COG0642	Histidine kinase
ND441_RS11555	COG2198	Histidine kinase
ND441_RS11565	COG0784	Response regulator, receiver
ND441_RS11565	COG2205	protein histidine kinase activity
ND441_RS11575	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ND441_RS11580	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ND441_RS11590	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ND441_RS11600	COG4574	serine-type endopeptidase inhibitor activity
ND441_RS11610	COG2246	polysaccharide biosynthetic process
ND441_RS11625	COG0814	amino acid
ND441_RS11650	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
ND441_RS11655	COG0596	Alpha beta hydrolase
ND441_RS11660	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
ND441_RS11665	COG1169	isochorismate synthase
ND441_RS11670	COG4575	ribosome binding
ND441_RS11685	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ND441_RS11690	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ND441_RS11700	COG0839	Belongs to the complex I subunit 6 family
ND441_RS11705	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ND441_RS11710	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ND441_RS11715	COG1034	ATP synthesis coupled electron transport
ND441_RS11735	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ND441_RS11740	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ND441_RS11745	COG0583	DNA-binding transcription factor activity
ND441_RS11750	COG0436	Aminotransferase
ND441_RS11755	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
ND441_RS11760	COG0471	metal ion transport
ND441_RS11760	COG0490	domain, Protein
ND441_RS11770	COG3013	Belongs to the UPF0304 family
ND441_RS11775	COG3092	negative regulation of chromosome organization
ND441_RS11785	COG0280	phosphate acetyltransferase
ND441_RS11785	COG0857	belongs to the CobB CobQ family
ND441_RS11790	COG1609	Transcriptional regulator
ND441_RS11805	COG3037	sugar-specific permease SgaT UlaA
ND441_RS11810	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
ND441_RS11815	COG0622	Phosphoesterase
ND441_RS11830	COG0625	glutathione transferase activity
ND441_RS11835	COG1090	epimerase
ND441_RS11845	COG4160	amino acid transport
ND441_RS11850	COG4215	(ABC) transporter
ND441_RS11865	COG0163	prenyltransferase activity
ND441_RS11870	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
ND441_RS11875	COG1286	toxin biosynthetic process
ND441_RS11880	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
ND441_RS11885	COG0285	dihydrofolate synthase activity
ND441_RS11895	COG0586	Pfam SNARE associated Golgi protein
ND441_RS11905	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ND441_RS11930	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ND441_RS11935	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ND441_RS11965	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ND441_RS11980	COG3101	peptidyl-lysine hydroxylation
ND441_RS11985	COG0730	response to heat
ND441_RS11990	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
ND441_RS12000	COG2890	protein-(glutamine-N5) methyltransferase activity
ND441_RS12005	COG2840	Smr protein MutS2
ND441_RS12010	COG2062	phosphohistidine phosphatase, SixA
ND441_RS12015	COG1250	3-hydroxyacyl-CoA dehydrogenase
ND441_RS12015	COG1024	Enoyl-CoA hydratase
ND441_RS12020	COG0183	Belongs to the thiolase family
ND441_RS12025	COG3691	Protein conserved in bacteria
ND441_RS12040	COG4235	cytochrome complex assembly
ND441_RS12040	COG3088	subunit of a heme lyase
ND441_RS12045	COG4235	cytochrome complex assembly
ND441_RS12045	COG3088	subunit of a heme lyase
ND441_RS12050	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ND441_RS12055	COG1138	Cytochrome C-type biogenesis protein
ND441_RS12060	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
ND441_RS12065	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ND441_RS12070	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ND441_RS12075	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ND441_RS12090	COG0582	viral genome integration into host DNA
ND441_RS12095	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
ND441_RS12150	COG2824	Alkylphosphonate utilization operon protein PhnA
ND441_RS12155	COG2951	lytic endotransglycosylase activity
ND441_RS12160	COG1598	PFAM Uncharacterised protein family UPF0150
ND441_RS12170	COG3038	cytochrome b561
ND441_RS12175	COG0436	Aminotransferase
ND441_RS12185	COG3275	phosphorelay sensor kinase activity
ND441_RS12190	COG3279	Response regulator of the LytR AlgR family
ND441_RS12195	COG2223	nitrite transmembrane transporter activity
ND441_RS12200	COG0837	glucose binding
ND441_RS12220	COG1914	H( )-stimulated, divalent metal cation uptake system
ND441_RS12225	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ND441_RS12285	COG3530	Putative quorum-sensing-regulated virulence factor
ND441_RS12290	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ND441_RS12300	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
ND441_RS12310	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ND441_RS12325	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ND441_RS12335	COG4208	sulfate ABC transporter
ND441_RS12340	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ND441_RS12345	COG4150	thiosulfate binding
ND441_RS12355	COG1737	Transcriptional regulator
ND441_RS12360	COG2731	YhcH YjgK YiaL family protein
ND441_RS12375	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ND441_RS12380	COG2837	iron assimilation
ND441_RS12390	COG3111	PFAM Bacterial OB fold (BOF) protein
ND441_RS12450	COG1671	Belongs to the UPF0178 family
ND441_RS12455	COG0281	malic enzyme
ND441_RS12455	COG0280	phosphate acetyltransferase
ND441_RS12460	COG0494	nUDIX hydrolase
ND441_RS12465	COG3005	denitrification pathway
ND441_RS12470	COG3043	anaerobic respiration
ND441_RS12475	COG0243	molybdopterin cofactor binding
ND441_RS12480	COG3062	negative regulation of establishment of protein localization
ND441_RS12485	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
ND441_RS12485	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ND441_RS12490	COG2197	response regulator
ND441_RS12500	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ND441_RS12510	COG1605	Chorismate mutase
ND441_RS12515	COG1393	Belongs to the ArsC family
ND441_RS12520	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ND441_RS12525	COG1876	peptidase activity
ND441_RS12535	COG0400	carboxylic ester hydrolase activity
ND441_RS12555	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
ND441_RS12560	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ND441_RS12565	COG2716	regulation of RNA biosynthetic process
ND441_RS12570	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ND441_RS12575	COG0628	permease
ND441_RS12580	COG4783	chaperone-mediated protein folding
ND441_RS12585	COG1393	Belongs to the ArsC family
ND441_RS12590	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
ND441_RS12595	COG2233	PERMEase
ND441_RS12600	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
ND441_RS12605	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
ND441_RS12610	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ND441_RS12615	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ND441_RS12625	COG0581	inorganic phosphate transmembrane transporter activity
ND441_RS12630	COG0573	inorganic phosphate transmembrane transporter activity
ND441_RS12635	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ND441_RS12650	COG2239	Acts as a magnesium transporter
ND441_RS12655	COG0443	Heat shock 70 kDa protein
ND441_RS12665	COG3121	Chaperone
ND441_RS12685	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ND441_RS12695	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ND441_RS12700	COG0477	Major facilitator Superfamily
ND441_RS12705	COG2205	protein histidine kinase activity
ND441_RS12710	COG0745	RESPONSE REGULATOR receiver
ND441_RS12715	COG3422	double-strand break repair
ND441_RS12720	COG0826	peptidase U32
ND441_RS12725	COG1597	lipid kinase activity
ND441_RS12740	COG0351	phosphomethylpyrimidine kinase
ND441_RS12755	COG0519	Catalyzes the synthesis of GMP from XMP
ND441_RS12755	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ND441_RS12760	COG0516	GMP reductase activity
ND441_RS12760	COG0517	IMP dehydrogenase activity
ND441_RS12765	COG1570	exodeoxyribonuclease VII activity
ND441_RS12770	COG1645	bacterial-type flagellum-dependent swarming motility
ND441_RS12780	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ND441_RS12785	COG2976	Protein conserved in bacteria
ND441_RS12790	COG0124	histidyl-tRNA synthetase
ND441_RS12810	COG0820	rRNA (adenine-C2-)-methyltransferase activity
ND441_RS12825	COG4953	penicillin-binding protein 1C
ND441_RS12830	COG2373	Large extracellular alpha-helical protein
ND441_RS12845	COG2975	iron-sulfur cluster assembly
ND441_RS12850	COG0633	Ferredoxin
ND441_RS12855	COG0443	Heat shock 70 kDa protein
ND441_RS12870	COG0822	iron-sulfur transferase activity
ND441_RS12880	COG1959	2 iron, 2 sulfur cluster binding
ND441_RS12885	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
ND441_RS12895	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
ND441_RS12900	COG3683	transport system, periplasmic component
ND441_RS12905	COG3711	transcriptional antiterminator
ND441_RS12910	COG2814	Major facilitator Superfamily
ND441_RS12920	COG1017	nitric oxide dioxygenase activity
ND441_RS12920	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ND441_RS12925	COG2188	Transcriptional regulator
ND441_RS12935	COG3457	Alanine racemase
ND441_RS12940	COG1735	metal-dependent hydrolase with the TIM-barrel fold
ND441_RS12955	COG0347	Belongs to the P(II) protein family
ND441_RS12960	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ND441_RS12960	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ND441_RS12965	COG2204	response regulator
ND441_RS12970	COG3170	Tfp pilus assembly protein FimV
ND441_RS12975	COG2205	protein histidine kinase activity
ND441_RS12990	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
ND441_RS13000	COG0560	Phosphoserine phosphatase
ND441_RS13005	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ND441_RS13005	COG1263	PTS System
ND441_RS13015	COG1737	Transcriptional regulator
ND441_RS13020	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ND441_RS13030	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ND441_RS13040	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ND441_RS13055	COG0481	GTPase activity
ND441_RS13060	COG3086	response to oxidative stress
ND441_RS13070	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
ND441_RS13080	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
ND441_RS13090	COG0513	Belongs to the DEAD box helicase family
ND441_RS13105	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
ND441_RS13115	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
ND441_RS13120	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ND441_RS13125	COG0497	DNA recombination
ND441_RS13130	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ND441_RS13140	COG2867	negative regulation of translational initiation
ND441_RS13145	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
ND441_RS13155	COG0582	viral genome integration into host DNA
ND441_RS13185	COG3596	GTP binding
ND441_RS13190	COG2378	regulation of single-species biofilm formation
ND441_RS13200	COG2378	regulation of single-species biofilm formation
ND441_RS13225	COG2003	Belongs to the UPF0758 family
ND441_RS13280	COG3121	Chaperone
ND441_RS13285	COG3188	usher protein
ND441_RS13310	COG0583	DNA-binding transcription factor activity
ND441_RS13385	COG1069	ribulokinase activity
ND441_RS13395	COG1172	Belongs to the binding-protein-dependent transport system permease family
ND441_RS13400	COG1129	ABC transporter
ND441_RS13420	COG1620	l-lactate permease
ND441_RS13425	COG1304	FMN binding
ND441_RS13430	COG0579	oxidoreductase
ND441_RS13435	COG1278	Cold shock
ND441_RS13465	COG1780	Probably involved in ribonucleotide reductase function
ND441_RS13470	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ND441_RS13480	COG4175	Glycine betaine
ND441_RS13485	COG4176	ABC-type proline glycine betaine transport system permease component
ND441_RS13490	COG2113	Glycine betaine
ND441_RS13500	COG2814	Major facilitator Superfamily
ND441_RS13505	COG1846	Transcriptional regulator
ND441_RS13515	COG1566	PFAM secretion protein HlyD family protein
ND441_RS13520	COG2814	Major facilitator Superfamily
ND441_RS13525	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ND441_RS13530	COG3118	belongs to the thioredoxin family
ND441_RS13535	COG3148	PFAM DTW domain containing protein
ND441_RS13540	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ND441_RS13540	COG0045	succinate-CoA ligase (ADP-forming) activity
ND441_RS13540	COG1042	CoA-binding domain protein
ND441_RS13545	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ND441_RS13550	COG5544	Lipoprotein
ND441_RS13575	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
ND441_RS13585	COG2011	ABC-type metal ion transport system permease component
ND441_RS13590	COG1464	Belongs to the NlpA lipoprotein family
ND441_RS13600	COG1720	tRNA m6t6A37 methyltransferase activity
ND441_RS13605	COG0442	prolyl-tRNA aminoacylation
ND441_RS13610	COG3015	lipoprotein NlpE involved in copper resistance
ND441_RS13620	COG4681	YaeQ
ND441_RS13630	COG4568	rho-dependent transcription termination
ND441_RS13645	COG0346	lactoylglutathione lyase activity
ND441_RS13660	COG0825	malonyl-CoA metabolic process
ND441_RS13665	COG0587	DNA-directed DNA polymerase activity
ND441_RS13670	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ND441_RS13690	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ND441_RS13695	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
ND441_RS13705	COG0750	zinc metalloprotease
ND441_RS13710	COG0575	Belongs to the CDS family
ND441_RS13730	COG0528	UMP kinase activity
ND441_RS13735	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
ND441_RS13750	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
ND441_RS13755	COG2171	N-acyltransferase activity
ND441_RS13770	COG0564	pseudouridine synthase activity
ND441_RS13775	COG3098	single-species biofilm formation
ND441_RS13790	COG1611	Belongs to the LOG family
ND441_RS13800	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
ND441_RS13805	COG2363	Small membrane protein
ND441_RS13810	COG0583	DNA-binding transcription factor activity
ND441_RS13820	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ND441_RS13825	COG2166	iron-sulfur cluster assembly
ND441_RS13830	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ND441_RS13835	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
ND441_RS13855	COG0860	N-Acetylmuramoyl-L-alanine amidase
ND441_RS13860	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
ND441_RS13860	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ND441_RS13865	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ND441_RS13870	COG1074	ATP-dependent DNA helicase activity
ND441_RS13875	COG1025	Belongs to the peptidase M16 family
ND441_RS13880	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ND441_RS13885	COG4967	type IV pilus modification protein PilV
ND441_RS13910	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
ND441_RS13915	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
ND441_RS13925	COG3066	DNA modification
ND441_RS13930	COG0861	Integral membrane protein TerC family
ND441_RS13935	COG0667	Aldo Keto reductase
ND441_RS13940	COG0477	Major facilitator Superfamily
ND441_RS13945	COG0318	PFAM AMP-dependent synthetase and ligase
ND441_RS13945	COG0204	Acyl-transferase
ND441_RS13950	COG1609	Transcriptional regulator
ND441_RS13960	COG0583	DNA-binding transcription factor activity
ND441_RS13965	COG0583	DNA-binding transcription factor activity
ND441_RS14020	COG2165	general secretion pathway protein
ND441_RS14030	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ND441_RS14060	COG1127	ABC transporter
ND441_RS14065	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ND441_RS14075	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
ND441_RS14085	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ND441_RS14090	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ND441_RS14095	COG4974	Belongs to the 'phage' integrase family
ND441_RS14100	COG0716	FMN binding
ND441_RS14110	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
ND441_RS14120	COG1272	protein, Hemolysin III
ND441_RS14140	COG0404	The glycine cleavage system catalyzes the degradation of glycine
ND441_RS14145	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ND441_RS14150	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ND441_RS14155	COG0006	proline dipeptidase activity
ND441_RS14165	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
ND441_RS14175	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ND441_RS14180	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ND441_RS14185	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ND441_RS14200	COG1279	arginine transmembrane transporter activity
ND441_RS14210	COG0191	fructose-bisphosphate aldolase activity
ND441_RS14215	COG0126	phosphoglycerate kinase activity
ND441_RS14220	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ND441_RS14225	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ND441_RS14235	COG1166	arginine decarboxylase activity
ND441_RS14240	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ND441_RS14255	COG0640	Transcriptional regulator
ND441_RS14260	COG3091	SprT-like family
ND441_RS14265	COG2356	endonuclease I
ND441_RS14270	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ND441_RS14275	COG0189	ligase activity
ND441_RS14280	COG1678	Uncharacterized ACR, COG1678
ND441_RS14285	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ND441_RS14290	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ND441_RS14300	COG2805	Type II/IV secretion system protein
ND441_RS14305	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ND441_RS14310	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
ND441_RS14315	COG0762	integral membrane protein
ND441_RS14320	COG1872	DUF167
ND441_RS14325	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
ND441_RS14330	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ND441_RS14345	COG3171	Protein conserved in bacteria
ND441_RS14355	COG1194	a g-specific adenine glycosylase
ND441_RS14360	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
ND441_RS14365	COG0741	lytic transglycosylase activity
ND441_RS14405	COG1105	Belongs to the carbohydrate kinase PfkB family
ND441_RS14410	COG1882	Formate acetyltransferase
ND441_RS14415	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ND441_RS14420	COG0814	amino acid
ND441_RS14435	COG1028	Short-chain dehydrogenase reductase Sdr
ND441_RS14440	COG3433	isochorismatase activity
ND441_RS14440	COG1535	isochorismatase
ND441_RS14445	COG1021	2,3-dihydroxybenzoate-AMP ligase
ND441_RS14450	COG1169	isochorismate synthase
ND441_RS14455	COG4592	Periplasmic binding protein
ND441_RS14465	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ND441_RS14470	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ND441_RS14475	COG1120	ATPase activity
ND441_RS14485	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ND441_RS14490	COG3251	PFAM MbtH domain protein
ND441_RS14500	COG4774	siderophore transport
ND441_RS14505	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
ND441_RS14530	COG4964	Belongs to the GSP D family
ND441_RS14590	COG0848	biopolymer transport protein
ND441_RS14595	COG0811	peptide transport
ND441_RS14600	COG0626	cystathionine gamma-synthase activity
ND441_RS14605	COG0586	Pfam SNARE associated Golgi protein
ND441_RS14610	COG2207	Transcriptional regulator
ND441_RS14615	COG1979	alcohol dehydrogenase
ND441_RS14620	COG0656	L-ascorbic acid biosynthetic process
ND441_RS14630	COG2132	Multicopper oxidase
ND441_RS14645	COG2249	NAD(P)H dehydrogenase (quinone) activity
ND441_RS14650	COG0583	DNA-binding transcription factor activity
ND441_RS14655	COG0187	DNA topoisomerase II activity
ND441_RS14660	COG3150	esterase
ND441_RS14665	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ND441_RS14670	COG3151	Protein conserved in bacteria
ND441_RS14675	COG0494	nUDIX hydrolase
ND441_RS14680	COG1538	Outer membrane efflux protein
ND441_RS14685	COG5463	Belongs to the UPF0441 family
ND441_RS14690	COG0754	glutathionylspermidine amidase activity
ND441_RS14695	COG3384	dioxygenase
ND441_RS14700	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ND441_RS14715	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
ND441_RS14715	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
ND441_RS14725	COG3025	triphosphatase activity
ND441_RS14730	COG4991	sh3 domain protein
ND441_RS14735	COG0617	tRNA 3'-terminal CCA addition
ND441_RS14740	COG1968	undecaprenyl-diphosphatase activity
ND441_RS14745	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ND441_RS14750	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
ND441_RS14755	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
ND441_RS14760	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ND441_RS14765	COG0358	DNA primase activity
ND441_RS14795	COG1028	Short-chain dehydrogenase reductase Sdr
ND441_RS14825	COG0463	Glycosyl transferase, family 2
ND441_RS14860	COG3210	domain, Protein
ND441_RS14865	COG3210	domain, Protein
ND441_RS14875	COG2831	hemolysin activation secretion protein
ND441_RS14880	COG0446	pyridine nucleotide-disulphide oxidoreductase
ND441_RS14880	COG1902	pentaerythritol trinitrate reductase activity
ND441_RS14895	COG1451	nucleotide metabolic process
ND441_RS14900	COG0673	inositol 2-dehydrogenase activity
ND441_RS14905	COG0861	Integral membrane protein TerC family
ND441_RS14910	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
ND441_RS14920	COG2721	sulfolactate sulfo-lyase activity
ND441_RS14935	COG2271	Major facilitator Superfamily
ND441_RS14950	COG0586	Pfam SNARE associated Golgi protein
ND441_RS14965	COG4575	ribosome binding
ND441_RS14970	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
ND441_RS14980	COG2259	Doxx family
ND441_RS14985	COG0583	DNA-binding transcription factor activity
ND441_RS14990	COG1741	Belongs to the pirin family
ND441_RS15005	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
ND441_RS15020	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
ND441_RS15025	COG2823	Periplasmic or secreted lipoprotein
ND441_RS15030	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ND441_RS15035	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
ND441_RS15040	COG5002	protein histidine kinase activity
ND441_RS15040	COG2198	Histidine kinase
ND441_RS15040	COG0784	Response regulator, receiver
ND441_RS15045	COG1242	4 iron, 4 sulfur cluster binding
ND441_RS15050	COG0067	glutamate synthase
ND441_RS15050	COG0070	glutamate synthase
ND441_RS15050	COG0069	glutamate synthase activity
ND441_RS15055	COG0493	'glutamate synthase
ND441_RS15065	COG2969	positive regulation of protein catabolic process
ND441_RS15070	COG0625	glutathione transferase activity
ND441_RS15075	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ND441_RS15080	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
ND441_RS15085	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ND441_RS15090	COG3105	Protein conserved in bacteria
ND441_RS15095	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ND441_RS15105	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ND441_RS15110	COG5007	Belongs to the BolA IbaG family
ND441_RS15115	COG3113	response to antibiotic
ND441_RS15120	COG2854	intermembrane phospholipid transfer
ND441_RS15125	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ND441_RS15130	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ND441_RS15135	COG1127	ABC transporter
ND441_RS15140	COG0530	calcium, potassium:sodium antiporter activity
ND441_RS15145	COG0517	IMP dehydrogenase activity
ND441_RS15145	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
ND441_RS15150	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ND441_RS15155	COG3117	lipopolysaccharide transmembrane transporter activity
ND441_RS15160	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ND441_RS15165	COG1137	ATPase activity
ND441_RS15170	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
ND441_RS15190	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ND441_RS15195	COG0540	Belongs to the ATCase OTCase family
ND441_RS15200	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
ND441_RS15210	COG0366	Alpha amylase catalytic
ND441_RS15215	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ND441_RS15215	COG1263	PTS System
ND441_RS15225	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ND441_RS15235	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ND441_RS15240	COG3783	Cytochrome b(562)
ND441_RS15245	COG0312	modulator of DNA gyrase
ND441_RS15250	COG3028	Belongs to the UPF0307 family
ND441_RS15255	COG2732	(Barnase) inhibitor
ND441_RS15260	COG4290	ribonuclease
ND441_RS15270	COG1289	transmembrane transporter activity
ND441_RS15275	COG1566	PFAM secretion protein HlyD family protein
ND441_RS15285	COG0583	DNA-binding transcription factor activity
ND441_RS15290	COG0312	modulator of DNA gyrase
ND441_RS15295	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ND441_RS15300	COG3164	Protein of unknown function
ND441_RS15310	COG0424	maF-like protein
ND441_RS15315	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
ND441_RS15320	COG1792	Involved in formation and maintenance of cell shape
ND441_RS15325	COG1077	Cell shape determining protein MreB Mrl
ND441_RS15330	COG2200	EAL domain
ND441_RS15330	COG2199	diguanylate cyclase activity
ND441_RS15335	COG0604	alcohol dehydrogenase
ND441_RS15340	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ND441_RS15345	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
ND441_RS15355	COG0511	ligase activity, forming carbon-carbon bonds
ND441_RS15360	COG0439	Biotin carboxylase
ND441_RS15365	COG3924	membrane
ND441_RS15370	COG4145	pantothenate transmembrane transporter activity
ND441_RS15375	COG2264	protein methyltransferase activity
ND441_RS15380	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ND441_RS15385	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ND441_RS15395	COG1560	Kdo2-lipid A biosynthetic process
ND441_RS15405	COG1346	cytolysis
ND441_RS15410	COG1380	Effector of murein hydrolase LrgA
ND441_RS15415	COG0583	DNA-binding transcription factor activity
ND441_RS15420	COG0025	NhaP-type Na H and K H
ND441_RS15425	COG2252	PERMEase
ND441_RS15440	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ND441_RS15445	COG2315	Protein conserved in bacteria
ND441_RS15450	COG1448	Aminotransferase
ND441_RS15475	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ND441_RS15480	COG0735	belongs to the Fur family
ND441_RS15485	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ND441_RS15490	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ND441_RS15495	COG2937	Belongs to the GPAT DAPAT family
ND441_RS15515	COG4580	involved in the transport of maltose and maltodextrins
ND441_RS15530	COG2182	Extracellular solute-binding protein
ND441_RS15535	COG1175	transmembrane transport
ND441_RS15540	COG3833	ABC-type maltose transport systems, permease component
ND441_RS15545	COG3223	Belongs to the PsiE family
ND441_RS15555	COG0527	aspartate kinase activity
ND441_RS15570	COG3328	transposase activity
ND441_RS15580	COG3328	transposase activity
ND441_RS15605	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ND441_RS15685	COG0583	DNA-binding transcription factor activity
ND441_RS15725	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ND441_RS15765	COG0138	bifunctional purine biosynthesis protein purh
ND441_RS15770	COG0151	Belongs to the GarS family
ND441_RS15790	COG1515	deoxyribonuclease V activity
ND441_RS15795	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ND441_RS15800	COG2816	NAD+ diphosphatase activity
ND441_RS15805	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
ND441_RS15820	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ND441_RS15825	COG2104	thiamine diphosphate biosynthetic process
ND441_RS15830	COG2022	thiamine diphosphate biosynthetic process
ND441_RS15840	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
ND441_RS15845	COG0085	RNA polymerase activity
ND441_RS15850	COG0222	ribosome binding
ND441_RS15855	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ND441_RS15865	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
ND441_RS15870	COG0250	Participates in transcription elongation, termination and antitermination
ND441_RS15915	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ND441_RS15940	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
ND441_RS15945	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ND441_RS15950	COG1739	Uncharacterized protein family UPF0029
ND441_RS15960	COG1250	3-hydroxyacyl-CoA dehydrogenase
ND441_RS15960	COG1024	Enoyl-CoA hydratase
ND441_RS15970	COG0543	2 iron, 2 sulfur cluster binding
ND441_RS15985	COG0250	Participates in transcription elongation, termination and antitermination
ND441_RS16000	COG0805	protein transport
ND441_RS16005	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ND441_RS16010	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ND441_RS16015	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ND441_RS16020	COG3165	ubiquinone biosynthetic process from chorismate
ND441_RS16025	COG2226	methyltransferase
ND441_RS16030	COG1322	Protein conserved in bacteria
ND441_RS16035	COG0586	Pfam SNARE associated Golgi protein
ND441_RS16040	COG1966	Carbon starvation protein
ND441_RS16055	COG0412	Dienelactone hydrolase
ND441_RS16060	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
ND441_RS16065	COG0583	DNA-binding transcription factor activity
ND441_RS16070	COG0697	spore germination
ND441_RS16080	COG0584	glycerophosphoryl diester phosphodiesterase
ND441_RS16090	COG0395	ABC-type sugar transport system, permease component
ND441_RS16095	COG1175	transmembrane transport
ND441_RS16100	COG1653	transport
ND441_RS16135	COG0410	ABC transporter
ND441_RS16145	COG4177	L-phenylalanine transmembrane transporter activity
ND441_RS16165	COG1929	Belongs to the glycerate kinase type-1 family
ND441_RS16170	COG2610	gluconate transmembrane transporter activity
ND441_RS16175	COG3835	regulator
ND441_RS16185	COG2177	Part of the ABC transporter FtsEX involved in
ND441_RS16190	COG2884	Cell division ATP-binding protein ftsE
ND441_RS16195	COG0552	protein localization to endoplasmic reticulum
ND441_RS16195	COG0552	protein localization to endoplasmic reticulum
ND441_RS16200	COG0742	ribosomal rna small subunit methyltransferase
ND441_RS16205	COG3776	membrane
ND441_RS16220	COG3714	YhhN family
ND441_RS16235	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ND441_RS16245	COG0247	lactate metabolic process
ND441_RS16255	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
ND441_RS16265	COG2271	Major facilitator Superfamily
ND441_RS16270	COG0584	glycerophosphoryl diester phosphodiesterase
ND441_RS16275	COG0561	phosphatase activity
ND441_RS16280	COG2267	carboxylic ester hydrolase activity
ND441_RS16285	COG1280	lysine exporter protein (LysE YggA)
ND441_RS16290	COG0514	ATP-dependent DNA helicase (RecQ)
ND441_RS16295	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
ND441_RS16300	COG2050	protein possibly involved in aromatic compounds catabolism
ND441_RS16320	COG5564	TIM-barrel signal transduction protein
ND441_RS16325	COG5441	Belongs to the UPF0261 family
ND441_RS16335	COG0210	DNA helicase
ND441_RS16340	COG1011	Hydrolase
ND441_RS16345	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ND441_RS16350	COG3159	Protein conserved in bacteria
ND441_RS16355	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
ND441_RS16360	COG5567	small periplasmic lipoprotein
ND441_RS16370	COG3072	Adenylate cyclase
ND441_RS16375	COG0181	hydroxymethylbilane synthase activity
ND441_RS16380	COG1587	Uroporphyrinogen-III synthase
ND441_RS16385	COG2959	enzyme of heme biosynthesis
ND441_RS16390	COG3071	HemY protein
ND441_RS16440	COG2244	polysaccharide biosynthetic process
ND441_RS16445	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ND441_RS16450	COG0456	acetyltransferase
ND441_RS16455	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
ND441_RS16460	COG1088	dTDP-glucose 4,6-dehydratase activity
ND441_RS16465	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ND441_RS16470	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ND441_RS16475	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
ND441_RS16480	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ND441_RS16485	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ND441_RS16490	COG3118	belongs to the thioredoxin family
ND441_RS16500	COG0248	Ppx GppA phosphatase
ND441_RS16510	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ND441_RS16525	COG3397	chitin binding
ND441_RS16535	COG0129	dihydroxy-acid dehydratase activity
ND441_RS16545	COG3978	acetolactate synthase activity
ND441_RS16565	COG3085	chromosome segregation
ND441_RS16570	COG0583	DNA-binding transcription factor activity
ND441_RS16645	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ND441_RS16655	COG0678	peroxiredoxin activity
ND441_RS16655	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ND441_RS16660	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ND441_RS16695	COG1629	transport
ND441_RS16700	COG0165	Argininosuccinate lyase
ND441_RS16705	COG0137	argininosuccinate synthase activity
ND441_RS16710	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ND441_RS16755	COG0460	homoserine dehydrogenase
ND441_RS16755	COG0527	aspartate kinase activity
ND441_RS16760	COG0626	cystathionine gamma-synthase activity
ND441_RS16765	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
ND441_RS16775	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ND441_RS16780	COG1609	Transcriptional regulator
ND441_RS16785	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ND441_RS16790	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
ND441_RS16795	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
ND441_RS16800	COG1575	Belongs to the MenA family. Type 1 subfamily
ND441_RS16805	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ND441_RS16810	COG3074	FtsZ-dependent cytokinesis
ND441_RS16815	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
ND441_RS16820	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ND441_RS16825	COG1494	fructose-1,6-bisphosphatase
ND441_RS16830	COG2814	Major facilitator Superfamily
ND441_RS16840	COG3152	Membrane
ND441_RS16855	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ND441_RS16865	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
ND441_RS16870	COG3678	ATP-independent chaperone mediated protein folding
ND441_RS16875	COG0745	RESPONSE REGULATOR receiver
ND441_RS16880	COG2205	protein histidine kinase activity
ND441_RS16885	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ND441_RS16890	COG1045	serine acetyltransferase
ND441_RS16895	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
ND441_RS16900	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
ND441_RS16905	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ND441_RS16910	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ND441_RS16915	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
ND441_RS16920	COG4942	peptidase
ND441_RS16925	COG2861	carbohydrate metabolic process
ND441_RS16940	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ND441_RS16945	COG0859	PFAM glycosyl transferase family 9
ND441_RS16950	COG0859	PFAM glycosyl transferase family 9
ND441_RS16955	COG1519	Transferase
ND441_RS16975	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ND441_RS16980	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ND441_RS16985	COG2003	Belongs to the UPF0758 family
ND441_RS16990	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ND441_RS16995	COG0756	dUTP diphosphatase activity
ND441_RS17000	COG1309	transcriptional regulator
ND441_RS17005	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
ND441_RS17010	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
ND441_RS17015	COG1561	YicC-like family, N-terminal region
ND441_RS17030	COG5001	Diguanylate cyclase
ND441_RS17035	COG1024	Enoyl-CoA hydratase
ND441_RS17040	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ND441_RS17050	COG2860	membrane
ND441_RS17055	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ND441_RS17065	COG1758	RNA polymerase activity
ND441_RS17070	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ND441_RS17075	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ND441_RS17080	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ND441_RS17085	COG0786	glutamate:sodium symporter activity
ND441_RS17090	COG2233	PERMEase
ND441_RS17095	COG2982	Protein involved in outer membrane biogenesis
ND441_RS17100	COG0456	acetyltransferase
ND441_RS17115	COG1011	Hydrolase
ND441_RS17130	COG3852	Histidine kinase
ND441_RS17140	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ND441_RS17150	COG0218	Necessary for normal cell division and for the maintenance of normal septation
ND441_RS17155	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ND441_RS17155	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ND441_RS17160	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ND441_RS17165	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ND441_RS17170	COG3084	Protein conserved in bacteria
ND441_RS17180	COG1763	Mo-molybdopterin cofactor biosynthetic process
ND441_RS17205	COG2186	Transcriptional regulator
ND441_RS17210	COG1609	Transcriptional regulator
ND441_RS17215	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ND441_RS17225	COG1172	Belongs to the binding-protein-dependent transport system permease family
ND441_RS17230	COG1129	ABC transporter
ND441_RS17235	COG1869	D-ribose catabolic process
ND441_RS17240	COG3158	transport of potassium into the cell
ND441_RS17245	COG0714	Associated with various cellular activities
ND441_RS17250	COG2425	protein containing a von Willebrand factor type A (vWA) domain
ND441_RS17260	COG2502	aspartate--ammonia ligase
ND441_RS17265	COG1522	sequence-specific DNA binding
ND441_RS17270	COG0716	FMN binding
ND441_RS17275	COG0445	tRNA wobble uridine modification
ND441_RS17280	COG0357	Ribosomal RNA small subunit methyltransferase G
ND441_RS17285	COG3312	ion transport
ND441_RS17290	COG0356	it plays a direct role in the translocation of protons across the membrane
ND441_RS17300	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
ND441_RS17310	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
ND441_RS17315	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
ND441_RS17325	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ND441_RS17340	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ND441_RS17345	COG0573	inorganic phosphate transmembrane transporter activity
ND441_RS17350	COG0581	inorganic phosphate transmembrane transporter activity
ND441_RS17360	COG0704	Plays a role in the regulation of phosphate uptake
ND441_RS17365	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ND441_RS17370	COG0765	amino acid transport
ND441_RS17375	COG0765	amino acid transport
ND441_RS17380	COG2252	PERMEase
ND441_RS17385	COG0840	transmembrane signaling receptor activity
ND441_RS17395	COG3121	Chaperone
ND441_RS17410	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
ND441_RS17415	COG0706	membrane insertase activity
ND441_RS17425	COG0594	ribonuclease P activity
ND441_RS17430	COG0230	Belongs to the bacterial ribosomal protein bL34 family
ND441_RS17435	COG5301	cellulose 1,4-beta-cellobiosidase activity
ND441_RS17485	COG4386	tail sheath protein
ND441_RS17510	COG4397	Mu-like prophage major head subunit gpT
ND441_RS17535	COG4383	Mu-like prophage protein gp29
ND441_RS17590	COG4382	Mu-like prophage protein Gp16
ND441_RS17655	COG3423	Transcriptional regulator
ND441_RS17820	COG2944	sequence-specific DNA binding
ND441_RS17890	COG1192	Involved in chromosome partitioning
ND441_RS17965	COG1454	alcohol dehydrogenase
ND441_RS18070	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ND441_RS18085	COG0741	lytic transglycosylase activity
ND441_RS18100	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs