locus-tag	class	description
NJ56_RS00005	COG0277	FAD linked oxidase domain protein
NJ56_RS00010	COG1686	Belongs to the peptidase S11 family
NJ56_RS00020	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NJ56_RS00025	COG0513	Belongs to the DEAD box helicase family
NJ56_RS00030	COG1309	transcriptional regulator
NJ56_RS00035	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_RS00040	COG1131	(ABC) transporter
NJ56_RS00045	COG0842	Transport permease protein
NJ56_RS00050	COG0842	Transport permease protein
NJ56_RS00055	COG0670	Belongs to the BI1 family
NJ56_RS00060	COG0314	molybdopterin synthase activity
NJ56_RS00065	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
NJ56_RS00075	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
NJ56_RS00080	COG0391	Required for morphogenesis under gluconeogenic growth conditions
NJ56_RS00085	COG1120	ATPase activity
NJ56_RS00090	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_RS00105	COG4628	conserved protein (DUF2132)
NJ56_RS00110	COG0556	nucleotide-excision repair
NJ56_RS00125	COG2226	methyltransferase
NJ56_RS00130	COG0156	8-amino-7-oxononanoate synthase activity
NJ56_RS00145	COG2706	6-phosphogluconolactonase activity
NJ56_RS00150	COG0561	phosphatase activity
NJ56_RS00160	COG4149	molybdate abc transporter
NJ56_RS00165	COG0725	ABC transporter, periplasmic molybdate-binding protein
NJ56_RS00175	COG2005	Transcriptional regulator
NJ56_RS00175	COG3585	molybdate ion transport
NJ56_RS00185	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NJ56_RS00190	COG1085	galactose-1-phosphate uridylyltransferase
NJ56_RS00200	COG2017	converts alpha-aldose to the beta-anomer
NJ56_RS00210	COG0588	phosphoglycerate mutase activity
NJ56_RS00215	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJ56_RS00225	COG2205	protein histidine kinase activity
NJ56_RS00225	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_RS00235	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
NJ56_RS00270	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
NJ56_RS00275	COG2885	chlorophyll binding
NJ56_RS00280	COG0823	Involved in the tonB-independent uptake of proteins
NJ56_RS00285	COG3064	Membrane
NJ56_RS00285	COG3064	Membrane
NJ56_RS00290	COG0848	biopolymer transport protein
NJ56_RS00295	COG0811	peptide transport
NJ56_RS00300	COG0824	Thioesterase
NJ56_RS00305	COG3790	cyd operon protein YbgE
NJ56_RS00310	COG4890	Cyd operon protein YbgT
NJ56_RS00315	COG1294	oxidase, subunit
NJ56_RS00320	COG1271	oxidase subunit
NJ56_RS00325	COG0737	Belongs to the 5'-nucleotidase family
NJ56_RS00330	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
NJ56_RS00335	COG0045	succinate-CoA ligase (ADP-forming) activity
NJ56_RS00340	COG0508	dehydrogenase complex catalyzes the overall conversion of
NJ56_RS00345	COG0567	Dehydrogenase, E1 component
NJ56_RS00350	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NJ56_RS00355	COG1053	succinate dehydrogenase
NJ56_RS00360	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NJ56_RS00395	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
NJ56_RS00400	COG1984	allophanate hydrolase subunit 2
NJ56_RS00405	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
NJ56_RS00410	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
NJ56_RS00415	COG5212	phosphodiesterase
NJ56_RS00420	COG0415	Belongs to the DNA photolyase family
NJ56_RS00425	COG3272	Protein of unknown function (DUF1722)
NJ56_RS00445	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
NJ56_RS00450	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
NJ56_RS00455	COG2205	protein histidine kinase activity
NJ56_RS00460	COG0745	RESPONSE REGULATOR receiver
NJ56_RS00470	COG0033	Phosphoglucomutase
NJ56_RS00475	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
NJ56_RS00480	COG0596	Alpha beta hydrolase
NJ56_RS00490	COG0840	transmembrane signaling receptor activity
NJ56_RS00500	COG0735	belongs to the Fur family
NJ56_RS00525	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_RS00525	COG1263	PTS System
NJ56_RS00525	COG2190	(PTS) system
NJ56_RS00535	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NJ56_RS00540	COG1846	Transcriptional regulator
NJ56_RS00540	COG1940	carbohydrate kinase activity
NJ56_RS00545	COG0647	UMP catabolic process
NJ56_RS00550	COG0367	asparagine synthase
NJ56_RS00585	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJ56_RS00590	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NJ56_RS00595	COG1702	phosphate starvation-inducible protein PhoH
NJ56_RS00600	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
NJ56_RS00605	COG4535	Mg2 and Co2 transporter CorC
NJ56_RS00610	COG0815	Transfers the fatty acyl group on membrane lipoproteins
NJ56_RS00625	COG0765	amino acid transport
NJ56_RS00630	COG0765	amino acid transport
NJ56_RS00635	COG1126	abc transporter atp-binding protein
NJ56_RS00640	COG2888	peptidyl-tyrosine sulfation
NJ56_RS00650	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
NJ56_RS00655	COG1466	dna polymerase III delta subunit
NJ56_RS00660	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
NJ56_RS00665	COG0799	negative regulation of ribosome biogenesis
NJ56_RS00670	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
NJ56_RS00675	COG0768	penicillin binding
NJ56_RS00680	COG0772	Belongs to the SEDS family
NJ56_RS00685	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NJ56_RS00690	COG1686	Belongs to the peptidase S11 family
NJ56_RS00695	COG2921	Belongs to the UPF0250 family
NJ56_RS00705	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NJ56_RS00715	COG3706	GGDEF domain
NJ56_RS00735	COG1278	Cold shock
NJ56_RS00740	COG2197	response regulator
NJ56_RS00765	COG1309	transcriptional regulator
NJ56_RS00780	COG3250	beta-galactosidase activity
NJ56_RS00800	COG1215	transferase activity, transferring glycosyl groups
NJ56_RS00810	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NJ56_RS00840	COG3038	cytochrome b561
NJ56_RS00865	COG1022	Amp-dependent synthetase and ligase
NJ56_RS00875	COG1393	Belongs to the ArsC family
NJ56_RS00880	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
NJ56_RS00910	COG2801	Transposase and inactivated derivatives
NJ56_RS00920	COG2801	Transposase and inactivated derivatives
NJ56_RS00925	COG0582	viral genome integration into host DNA
NJ56_RS00935	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
NJ56_RS00940	COG2501	S4 domain
NJ56_RS00970	COG3121	Chaperone
NJ56_RS00975	COG3188	usher protein
NJ56_RS01000	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NJ56_RS01005	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJ56_RS01010	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
NJ56_RS01015	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
NJ56_RS01020	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
NJ56_RS01025	COG4181	ATPase activity
NJ56_RS01030	COG2755	lipolytic protein G-D-S-L family
NJ56_RS01035	COG0300	oxidoreductase activity
NJ56_RS01040	COG3118	belongs to the thioredoxin family
NJ56_RS01045	COG0330	HflC and HflK could
NJ56_RS01050	COG1585	Membrane protein implicated in regulation of membrane protease activity
NJ56_RS01055	COG0789	Transcriptional regulator
NJ56_RS01060	COG2217	Heavy metal translocating P-type atpase
NJ56_RS01065	COG3735	TraB family
NJ56_RS01070	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
NJ56_RS01075	COG0737	Belongs to the 5'-nucleotidase family
NJ56_RS01080	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NJ56_RS01080	COG4651	solute:proton antiporter activity
NJ56_RS01085	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJ56_RS01090	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
NJ56_RS01120	COG0438	transferase activity, transferring glycosyl groups
NJ56_RS01165	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
NJ56_RS01175	COG0326	Molecular chaperone. Has ATPase activity
NJ56_RS01180	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
NJ56_RS01220	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
NJ56_RS01225	COG2832	Protein of unknown function (DUF454)
NJ56_RS01240	COG1196	nuclear chromosome segregation
NJ56_RS01240	COG3264	Mechanosensitive ion channel
NJ56_RS01245	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
NJ56_RS01250	COG1309	transcriptional regulator
NJ56_RS01255	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_RS01260	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJ56_RS01265	COG0254	rRNA binding
NJ56_RS01270	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NJ56_RS01295	COG3695	enzyme binding
NJ56_RS01300	COG1946	Acyl-CoA thioesterase
NJ56_RS01305	COG0004	ammonium transporteR
NJ56_RS01310	COG0347	Belongs to the P(II) protein family
NJ56_RS01315	COG1132	(ABC) transporter
NJ56_RS01320	COG1132	(ABC) transporter
NJ56_RS01325	COG1522	sequence-specific DNA binding
NJ56_RS01340	COG4533	DNA binding
NJ56_RS01345	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NJ56_RS01350	COG0824	Thioesterase
NJ56_RS01355	COG1555	photosystem II stabilization
NJ56_RS01360	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NJ56_RS01365	COG0776	regulation of translation
NJ56_RS01370	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
NJ56_RS01375	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
NJ56_RS01380	COG0740	serine-type endopeptidase activity
NJ56_RS01395	COG0271	Belongs to the BolA IbaG family
NJ56_RS01400	COG3056	Lipoprotein
NJ56_RS01405	COG2223	nitrite transmembrane transporter activity
NJ56_RS01415	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NJ56_RS01420	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NJ56_RS01425	COG1845	cytochrome c oxidase, subunit III
NJ56_RS01430	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
NJ56_RS01440	COG2814	Major facilitator Superfamily
NJ56_RS01445	COG1666	GTP binding
NJ56_RS01450	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NJ56_RS01455	COG0693	protein deglycase activity
NJ56_RS01490	COG0142	geranyltranstransferase activity
NJ56_RS01495	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
NJ56_RS01500	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
NJ56_RS01505	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
NJ56_RS01515	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
NJ56_RS01520	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NJ56_RS01520	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NJ56_RS01525	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
NJ56_RS01530	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NJ56_RS01535	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NJ56_RS01540	COG1862	Preprotein translocase
NJ56_RS01555	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
NJ56_RS01560	COG0450	alkyl hydroperoxide reductase
NJ56_RS01565	COG0300	oxidoreductase activity
NJ56_RS01570	COG0366	Alpha amylase catalytic
NJ56_RS01575	COG1113	amino acid transport
NJ56_RS01590	COG5002	protein histidine kinase activity
NJ56_RS01595	COG0745	RESPONSE REGULATOR receiver
NJ56_RS01600	COG0420	3'-5' exonuclease activity
NJ56_RS01605	COG0419	ATPase involved in DNA repair
NJ56_RS01610	COG1940	carbohydrate kinase activity
NJ56_RS01615	COG2974	May be involved in recombination
NJ56_RS01625	COG4126	flavin adenine dinucleotide binding
NJ56_RS01645	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
NJ56_RS01680	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
NJ56_RS01695	COG1073	alpha beta
NJ56_RS01700	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
NJ56_RS01705	COG2195	Cleaves the N-terminal amino acid of tripeptides
NJ56_RS01710	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NJ56_RS01720	COG2991	Protein conserved in bacteria
NJ56_RS01725	COG1477	protein flavinylation
NJ56_RS01735	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJ56_RS01740	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJ56_RS01745	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NJ56_RS01750	COG1805	sodium ion transport
NJ56_RS01760	COG3034	peptidoglycan biosynthetic process
NJ56_RS01765	COG0121	glutamine amidotransferase
NJ56_RS01770	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NJ56_RS01775	COG1960	acyl-CoA dehydrogenase activity
NJ56_RS01785	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NJ56_RS01795	COG2226	methyltransferase
NJ56_RS01805	COG0741	lytic transglycosylase activity
NJ56_RS01805	COG1388	LysM domain
NJ56_RS01810	COG3021	interspecies interaction between organisms
NJ56_RS01845	COG0542	response to heat
NJ56_RS01850	COG1496	oxidoreductase activity
NJ56_RS01855	COG0564	pseudouridine synthase activity
NJ56_RS01865	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJ56_RS01870	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
NJ56_RS01875	COG0077	Prephenate dehydratase
NJ56_RS01875	COG1605	Chorismate mutase
NJ56_RS01880	COG0287	Prephenate dehydrogenase
NJ56_RS01880	COG1605	Chorismate mutase
NJ56_RS01885	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJ56_RS01890	COG3279	Response regulator of the LytR AlgR family
NJ56_RS01895	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
NJ56_RS01900	COG3137	Salt-induced outer membrane protein
NJ56_RS01905	COG0335	large ribosomal subunit rRNA binding
NJ56_RS01910	COG0336	Belongs to the RNA methyltransferase TrmD family
NJ56_RS01915	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NJ56_RS01925	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NJ56_RS01930	COG4137	Cytochrome C assembly protein
NJ56_RS01935	COG4536	flavin adenine dinucleotide binding
NJ56_RS01940	COG1854	S-ribosylhomocysteine lyase activity
NJ56_RS01945	COG2918	glutathione biosynthetic process
NJ56_RS01950	COG1238	metal cluster binding
NJ56_RS01955	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NJ56_RS01980	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
NJ56_RS01985	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NJ56_RS01990	COG2137	regulation of response to DNA damage stimulus
NJ56_RS01995	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
NJ56_RS02010	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
NJ56_RS02010	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
NJ56_RS02035	COG3031	protein transport across the cell outer membrane
NJ56_RS02045	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NJ56_RS02090	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
NJ56_RS02100	COG3397	chitin binding
NJ56_RS02120	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NJ56_RS02250	COG0741	lytic transglycosylase activity
NJ56_RS02270	COG2205	protein histidine kinase activity
NJ56_RS02270	COG0784	Response regulator, receiver
NJ56_RS02280	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
NJ56_RS02285	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NJ56_RS02290	COG4942	peptidase
NJ56_RS02290	COG1388	LysM domain
NJ56_RS02300	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NJ56_RS02305	COG0585	pseudouridine synthase activity
NJ56_RS02310	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
NJ56_RS02320	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NJ56_RS02330	COG0529	Catalyzes the synthesis of activated sulfate
NJ56_RS02335	COG2895	sulfate adenylyltransferase (ATP) activity
NJ56_RS02340	COG0175	sulfate reduction
NJ56_RS02345	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NJ56_RS02345	COG1648	precorrin-2 dehydrogenase activity
NJ56_RS02350	COG2234	aminopeptidase activity
NJ56_RS02365	COG0175	sulfate reduction
NJ56_RS02375	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NJ56_RS02380	COG0720	synthase
NJ56_RS02385	COG0602	queuosine metabolic process
NJ56_RS02395	COG0504	CTP synthase activity
NJ56_RS02400	COG3956	TIGRFAM MazG family protein
NJ56_RS02405	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NJ56_RS02410	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NJ56_RS02420	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NJ56_RS02425	COG0232	Belongs to the dGTPase family. Type 2 subfamily
NJ56_RS02430	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NJ56_RS02440	COG2860	membrane
NJ56_RS02445	COG0316	Belongs to the HesB IscA family
NJ56_RS02455	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
NJ56_RS02460	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NJ56_RS02465	COG1643	Atp-dependent helicase
NJ56_RS02470	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
NJ56_RS02475	COG1489	DNA binding
NJ56_RS02495	COG0617	tRNA 3'-terminal CCA addition
NJ56_RS02500	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NJ56_RS02505	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
NJ56_RS02510	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
NJ56_RS02515	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
NJ56_RS02520	COG0726	polysaccharide deacetylase
NJ56_RS02525	COG0842	Transport permease protein
NJ56_RS02530	COG1131	(ABC) transporter
NJ56_RS02535	COG0288	reversible hydration of carbon dioxide
NJ56_RS02545	COG2132	Multicopper oxidase
NJ56_RS02555	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
NJ56_RS02570	COG3112	Uncharacterised protein family (UPF0231)
NJ56_RS02575	COG1049	propionate catabolic process, 2-methylcitrate cycle
NJ56_RS02585	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJ56_RS02590	COG0508	dehydrogenase complex catalyzes the overall conversion of
NJ56_RS02595	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
NJ56_RS02600	COG2186	Transcriptional regulator
NJ56_RS02610	COG1113	amino acid transport
NJ56_RS02615	COG3725	Membrane protein required for beta-lactamase induction
NJ56_RS02630	COG4969	Belongs to the N-Me-Phe pilin family
NJ56_RS02635	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NJ56_RS02640	COG1459	type II secretion system
NJ56_RS02645	COG0516	GMP reductase activity
NJ56_RS02665	COG0494	nUDIX hydrolase
NJ56_RS02690	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
NJ56_RS02695	COG0849	cell division
NJ56_RS02700	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
NJ56_RS02710	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NJ56_RS02715	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
NJ56_RS02720	COG0772	Belongs to the SEDS family
NJ56_RS02735	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NJ56_RS02740	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NJ56_RS02745	COG0768	penicillin binding
NJ56_RS02750	COG3116	cell division
NJ56_RS02755	COG0275	rRNA processing
NJ56_RS02770	COG0675	Transposase, IS605 OrfB family
NJ56_RS02790	COG0028	Belongs to the TPP enzyme family
NJ56_RS02795	COG1022	Amp-dependent synthetase and ligase
NJ56_RS02810	COG0473	3-isopropylmalate dehydrogenase activity
NJ56_RS02815	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NJ56_RS02825	COG2814	Major facilitator Superfamily
NJ56_RS02840	COG4143	(ABC) transporter
NJ56_RS02845	COG1178	ABC-type Fe3 transport system permease component
NJ56_RS02855	COG0586	Pfam SNARE associated Golgi protein
NJ56_RS02860	COG0417	DNA replication proofreading
NJ56_RS02865	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NJ56_RS02870	COG0564	pseudouridine synthase activity
NJ56_RS02880	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
NJ56_RS02890	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
NJ56_RS02895	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NJ56_RS02900	COG2967	ApaG domain
NJ56_RS02925	COG2966	Psort location CytoplasmicMembrane, score
NJ56_RS02935	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
NJ56_RS02950	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
NJ56_RS02955	COG1047	Peptidyl-prolyl cis-trans
NJ56_RS02960	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
NJ56_RS02970	COG0196	riboflavin kinase activity
NJ56_RS02985	COG0583	DNA-binding transcription factor activity
NJ56_RS02990	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NJ56_RS03000	COG0443	Heat shock 70 kDa protein
NJ56_RS03005	COG1584	GPR1 FUN34 yaaH family protein
NJ56_RS03015	COG0477	Major facilitator Superfamily
NJ56_RS03020	COG0521	Mo-molybdopterin cofactor biosynthetic process
NJ56_RS03025	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NJ56_RS03055	COG0745	RESPONSE REGULATOR receiver
NJ56_RS03060	COG3045	CreA protein
NJ56_RS03065	COG2207	Transcriptional regulator
NJ56_RS03065	COG3708	Transcriptional regulator
NJ56_RS03070	COG0406	alpha-ribazole phosphatase activity
NJ56_RS03075	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
NJ56_RS03080	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
NJ56_RS03085	COG0741	lytic transglycosylase activity
NJ56_RS03105	COG0488	(ABC) transporter
NJ56_RS03120	COG0560	Phosphoserine phosphatase
NJ56_RS03125	COG3726	membrane protein affecting hemolysin expression
NJ56_RS03135	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
NJ56_RS03150	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJ56_RS03155	COG0084	hydrolase, TatD family'
NJ56_RS03160	COG4667	esterase of the alpha-beta hydrolase superfamily
NJ56_RS03170	COG2823	Periplasmic or secreted lipoprotein
NJ56_RS03185	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
NJ56_RS03225	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
NJ56_RS03225	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_RS03225	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NJ56_RS03230	COG1461	Dihydroxyacetone kinase
NJ56_RS03235	COG2376	Dihydroxyacetone kinase
NJ56_RS03245	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJ56_RS03250	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_RS03265	COG0859	PFAM glycosyl transferase family 9
NJ56_RS03290	COG3119	arylsulfatase activity
NJ56_RS03295	COG0641	radical SAM
NJ56_RS03305	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_RS03315	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NJ56_RS03325	COG3716	PTS system mannose fructose sorbose family IID component
NJ56_RS03330	COG3715	PTS system
NJ56_RS03335	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_RS03340	COG2222	sugar isomerase
NJ56_RS03350	COG1349	DNA-binding transcription factor activity
NJ56_RS03355	COG3119	arylsulfatase activity
NJ56_RS03375	COG5492	domain, Protein
NJ56_RS03465	COG3077	Addiction module antitoxin, RelB DinJ family
NJ56_RS03495	COG0464	growth
NJ56_RS03585	COG0582	viral genome integration into host DNA
NJ56_RS03595	COG0795	lipopolysaccharide-transporting ATPase activity
NJ56_RS03600	COG0795	lipopolysaccharide-transporting ATPase activity
NJ56_RS03605	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NJ56_RS03610	COG2927	DNA polymerase III (CHI subunit)
NJ56_RS03625	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
NJ56_RS03645	COG3624	Phosphonate C-P lyase system protein PhnG
NJ56_RS03650	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
NJ56_RS03655	COG3626	phosphonate metabolism
NJ56_RS03660	COG3627	carbon phosphorus lyase activity
NJ56_RS03665	COG4107	phosphonate C-P lyase system protein PhnK
NJ56_RS03670	COG4778	phosphonate C-P lyase system protein PhnL
NJ56_RS03675	COG3454	Phosphonate metabolism
NJ56_RS03680	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
NJ56_RS03685	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
NJ56_RS03690	COG0702	epimerase
NJ56_RS03695	COG3787	Belongs to the UPF0306 family
NJ56_RS03700	COG1982	Orn Lys Arg decarboxylase major
NJ56_RS03705	COG0531	amino acid
NJ56_RS03710	COG2827	Endonuclease containing a URI domain
NJ56_RS03715	COG3153	acetyltransferase
NJ56_RS03720	COG3154	lipid carrier protein
NJ56_RS03725	COG0826	peptidase U32
NJ56_RS03730	COG0826	peptidase U32
NJ56_RS03740	COG0814	amino acid
NJ56_RS03745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NJ56_RS03750	COG0513	Belongs to the DEAD box helicase family
NJ56_RS03765	COG1185	polyribonucleotide nucleotidyltransferase activity
NJ56_RS03770	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
NJ56_RS03780	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
NJ56_RS03790	COG0195	Participates in both transcription termination and antitermination
NJ56_RS03810	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NJ56_RS03815	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NJ56_RS03820	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NJ56_RS03830	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
NJ56_RS03835	COG1534	Rna-binding protein
NJ56_RS03845	COG2027	D-alanyl-D-alanine carboxypeptidase
NJ56_RS03850	COG0745	RESPONSE REGULATOR receiver
NJ56_RS03855	COG0642	Histidine kinase
NJ56_RS03860	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
NJ56_RS03865	COG0697	spore germination
NJ56_RS03880	COG0142	geranyltranstransferase activity
NJ56_RS03895	COG3423	Transcriptional regulator
NJ56_RS03910	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NJ56_RS03920	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NJ56_RS03925	COG2105	PFAM AIG2 family protein
NJ56_RS03930	COG2911	Protein conserved in bacteria
NJ56_RS03935	COG0729	surface antigen
NJ56_RS03940	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NJ56_RS03945	COG1253	flavin adenine dinucleotide binding
NJ56_RS03955	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
NJ56_RS03960	COG1218	3'(2'),5'-bisphosphate nucleotidase
NJ56_RS03965	COG0737	Belongs to the 5'-nucleotidase family
NJ56_RS03975	COG0545	Peptidyl-prolyl cis-trans isomerase
NJ56_RS03980	COG3061	Opacity-associated protein A
NJ56_RS03985	COG0359	binds to the 23S rRNA
NJ56_RS03990	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
NJ56_RS03995	COG2965	DNA replication, synthesis of RNA primer
NJ56_RS04000	COG0360	Binds together with S18 to 16S ribosomal RNA
NJ56_RS04015	COG1073	alpha beta
NJ56_RS04035	COG3188	usher protein
NJ56_RS04040	COG3121	Chaperone
NJ56_RS04060	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NJ56_RS04065	COG0557	exoribonuclease II activity
NJ56_RS04070	COG1959	2 iron, 2 sulfur cluster binding
NJ56_RS04075	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NJ56_RS04080	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
NJ56_RS04085	COG0330	HflC and HflK could
NJ56_RS04090	COG0330	HflC and HflK could
NJ56_RS04095	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NJ56_RS04105	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
NJ56_RS04115	COG0860	N-Acetylmuramoyl-L-alanine amidase
NJ56_RS04120	COG0802	atpase or kinase
NJ56_RS04125	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NJ56_RS04125	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NJ56_RS04130	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
NJ56_RS04150	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
NJ56_RS04155	COG1162	GTPase activity
NJ56_RS04160	COG0688	phosphatidylethanolamine metabolic process
NJ56_RS04165	COG3264	Mechanosensitive ion channel
NJ56_RS04165	COG1511	domain protein
NJ56_RS04170	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
NJ56_RS04175	COG1053	succinate dehydrogenase
NJ56_RS04180	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NJ56_RS04185	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
NJ56_RS04190	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
NJ56_RS04210	COG3188	usher protein
NJ56_RS04230	COG3397	chitin binding
NJ56_RS04240	COG1509	lysine 2,3-aminomutase activity
NJ56_RS04270	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
NJ56_RS04280	COG4232	protein-disulfide reductase activity
NJ56_RS04285	COG1309	transcriptional regulator
NJ56_RS04295	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NJ56_RS04465	COG0464	growth
NJ56_RS04580	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NJ56_RS04630	COG1301	dicarboxylic acid transport
NJ56_RS04635	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NJ56_RS04640	COG3162	membrane
NJ56_RS04645	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NJ56_RS04675	COG0138	bifunctional purine biosynthesis protein purh
NJ56_RS04680	COG0151	Belongs to the GarS family
NJ56_RS04700	COG1515	deoxyribonuclease V activity
NJ56_RS04705	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
NJ56_RS04710	COG2816	NAD+ diphosphatase activity
NJ56_RS04715	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
NJ56_RS04730	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NJ56_RS04735	COG2104	thiamine diphosphate biosynthetic process
NJ56_RS04740	COG2022	thiamine diphosphate biosynthetic process
NJ56_RS04750	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NJ56_RS04755	COG0085	RNA polymerase activity
NJ56_RS04765	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
NJ56_RS04780	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
NJ56_RS04785	COG0250	Participates in transcription elongation, termination and antitermination
NJ56_RS04830	COG0812	UDP-N-acetylmuramate dehydrogenase activity
NJ56_RS04855	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
NJ56_RS04860	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NJ56_RS04865	COG1739	Uncharacterized protein family UPF0029
NJ56_RS04875	COG1250	3-hydroxyacyl-CoA dehydrogenase
NJ56_RS04875	COG1024	Enoyl-CoA hydratase
NJ56_RS04885	COG0543	2 iron, 2 sulfur cluster binding
NJ56_RS04900	COG0250	Participates in transcription elongation, termination and antitermination
NJ56_RS04915	COG0805	protein transport
NJ56_RS04925	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NJ56_RS04930	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NJ56_RS04935	COG3165	ubiquinone biosynthetic process from chorismate
NJ56_RS04940	COG2226	methyltransferase
NJ56_RS04945	COG1322	Protein conserved in bacteria
NJ56_RS04950	COG0586	Pfam SNARE associated Golgi protein
NJ56_RS04955	COG1966	Carbon starvation protein
NJ56_RS04970	COG0412	Dienelactone hydrolase
NJ56_RS04975	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
NJ56_RS04980	COG0583	DNA-binding transcription factor activity
NJ56_RS04985	COG0697	spore germination
NJ56_RS04995	COG0584	glycerophosphoryl diester phosphodiesterase
NJ56_RS05005	COG0395	ABC-type sugar transport system, permease component
NJ56_RS05010	COG1175	transmembrane transport
NJ56_RS05015	COG1653	transport
NJ56_RS05050	COG0410	ABC transporter
NJ56_RS05060	COG4177	L-phenylalanine transmembrane transporter activity
NJ56_RS05080	COG1929	Belongs to the glycerate kinase type-1 family
NJ56_RS05085	COG2610	gluconate transmembrane transporter activity
NJ56_RS05090	COG3835	regulator
NJ56_RS05100	COG2177	Part of the ABC transporter FtsEX involved in
NJ56_RS05105	COG2884	Cell division ATP-binding protein ftsE
NJ56_RS05110	COG0552	protein localization to endoplasmic reticulum
NJ56_RS05110	COG0552	protein localization to endoplasmic reticulum
NJ56_RS05115	COG0742	ribosomal rna small subunit methyltransferase
NJ56_RS05120	COG3776	membrane
NJ56_RS05135	COG3714	YhhN family
NJ56_RS05150	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
NJ56_RS05160	COG0247	lactate metabolic process
NJ56_RS05170	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
NJ56_RS05180	COG2271	Major facilitator Superfamily
NJ56_RS05185	COG0584	glycerophosphoryl diester phosphodiesterase
NJ56_RS05190	COG0561	phosphatase activity
NJ56_RS05195	COG2267	carboxylic ester hydrolase activity
NJ56_RS05200	COG1280	lysine exporter protein (LysE YggA)
NJ56_RS05205	COG0514	ATP-dependent DNA helicase (RecQ)
NJ56_RS05210	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
NJ56_RS05215	COG2050	protein possibly involved in aromatic compounds catabolism
NJ56_RS05235	COG5564	TIM-barrel signal transduction protein
NJ56_RS05240	COG5441	Belongs to the UPF0261 family
NJ56_RS05250	COG0210	DNA helicase
NJ56_RS05255	COG1011	Hydrolase
NJ56_RS05260	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NJ56_RS05265	COG3159	Protein conserved in bacteria
NJ56_RS05270	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
NJ56_RS05275	COG5567	small periplasmic lipoprotein
NJ56_RS05285	COG3072	Adenylate cyclase
NJ56_RS05290	COG0181	hydroxymethylbilane synthase activity
NJ56_RS05295	COG1587	Uroporphyrinogen-III synthase
NJ56_RS05300	COG2959	enzyme of heme biosynthesis
NJ56_RS05305	COG3071	HemY protein
NJ56_RS05355	COG2244	polysaccharide biosynthetic process
NJ56_RS05360	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NJ56_RS05365	COG0456	acetyltransferase
NJ56_RS05370	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
NJ56_RS05375	COG1088	dTDP-glucose 4,6-dehydratase activity
NJ56_RS05380	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
NJ56_RS05385	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
NJ56_RS05390	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
NJ56_RS05395	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NJ56_RS05400	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
NJ56_RS05405	COG3118	belongs to the thioredoxin family
NJ56_RS05415	COG0248	Ppx GppA phosphatase
NJ56_RS05425	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NJ56_RS05440	COG3397	chitin binding
NJ56_RS05450	COG0129	dihydroxy-acid dehydratase activity
NJ56_RS05465	COG3978	acetolactate synthase activity
NJ56_RS05485	COG3085	chromosome segregation
NJ56_RS05490	COG0583	DNA-binding transcription factor activity
NJ56_RS05560	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJ56_RS05570	COG0678	peroxiredoxin activity
NJ56_RS05570	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NJ56_RS05575	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJ56_RS05610	COG1629	transport
NJ56_RS05615	COG0165	Argininosuccinate lyase
NJ56_RS05620	COG0137	argininosuccinate synthase activity
NJ56_RS05625	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NJ56_RS05670	COG0460	homoserine dehydrogenase
NJ56_RS05670	COG0527	aspartate kinase activity
NJ56_RS05675	COG0626	cystathionine gamma-synthase activity
NJ56_RS05680	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
NJ56_RS05690	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NJ56_RS05695	COG1609	Transcriptional regulator
NJ56_RS05700	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NJ56_RS05705	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
NJ56_RS05710	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
NJ56_RS05715	COG1575	Belongs to the MenA family. Type 1 subfamily
NJ56_RS05720	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NJ56_RS05725	COG3074	FtsZ-dependent cytokinesis
NJ56_RS05735	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
NJ56_RS05740	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
NJ56_RS05745	COG1494	fructose-1,6-bisphosphatase
NJ56_RS05750	COG2814	Major facilitator Superfamily
NJ56_RS05760	COG3152	Membrane
NJ56_RS05775	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NJ56_RS05785	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
NJ56_RS05790	COG3678	ATP-independent chaperone mediated protein folding
NJ56_RS05795	COG0745	RESPONSE REGULATOR receiver
NJ56_RS05800	COG2205	protein histidine kinase activity
NJ56_RS05805	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
NJ56_RS05810	COG1045	serine acetyltransferase
NJ56_RS05815	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
NJ56_RS05820	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
NJ56_RS05825	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NJ56_RS05830	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NJ56_RS05835	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NJ56_RS05840	COG4942	peptidase
NJ56_RS05845	COG2861	carbohydrate metabolic process
NJ56_RS05860	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NJ56_RS05865	COG0859	PFAM glycosyl transferase family 9
NJ56_RS05870	COG0859	PFAM glycosyl transferase family 9
NJ56_RS05875	COG1519	Transferase
NJ56_RS05895	COG0267	Belongs to the bacterial ribosomal protein bL33 family
NJ56_RS05900	COG0227	Belongs to the bacterial ribosomal protein bL28 family
NJ56_RS05910	COG2003	Belongs to the UPF0758 family
NJ56_RS05915	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NJ56_RS05920	COG0756	dUTP diphosphatase activity
NJ56_RS05925	COG1309	transcriptional regulator
NJ56_RS05930	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
NJ56_RS05935	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
NJ56_RS05940	COG1561	YicC-like family, N-terminal region
NJ56_RS05955	COG5001	Diguanylate cyclase
NJ56_RS05960	COG1024	Enoyl-CoA hydratase
NJ56_RS05965	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJ56_RS05980	COG2860	membrane
NJ56_RS05985	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NJ56_RS05995	COG1758	RNA polymerase activity
NJ56_RS06000	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NJ56_RS06005	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NJ56_RS06010	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
NJ56_RS06015	COG0786	glutamate:sodium symporter activity
NJ56_RS06020	COG2233	PERMEase
NJ56_RS06025	COG2982	Protein involved in outer membrane biogenesis
NJ56_RS06030	COG0456	acetyltransferase
NJ56_RS06045	COG1011	Hydrolase
NJ56_RS06065	COG3852	Histidine kinase
NJ56_RS06075	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NJ56_RS06090	COG0218	Necessary for normal cell division and for the maintenance of normal septation
NJ56_RS06095	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NJ56_RS06095	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NJ56_RS06100	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NJ56_RS06105	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
NJ56_RS06110	COG3084	Protein conserved in bacteria
NJ56_RS06120	COG1763	Mo-molybdopterin cofactor biosynthetic process
NJ56_RS06145	COG2186	Transcriptional regulator
NJ56_RS06150	COG1609	Transcriptional regulator
NJ56_RS06155	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJ56_RS06165	COG1172	Belongs to the binding-protein-dependent transport system permease family
NJ56_RS06170	COG1129	ABC transporter
NJ56_RS06175	COG1869	D-ribose catabolic process
NJ56_RS06180	COG3158	transport of potassium into the cell
NJ56_RS06185	COG0714	Associated with various cellular activities
NJ56_RS06190	COG2425	protein containing a von Willebrand factor type A (vWA) domain
NJ56_RS06200	COG2502	aspartate--ammonia ligase
NJ56_RS06205	COG1522	sequence-specific DNA binding
NJ56_RS06210	COG0716	FMN binding
NJ56_RS06220	COG0445	tRNA wobble uridine modification
NJ56_RS06225	COG0357	Ribosomal RNA small subunit methyltransferase G
NJ56_RS06230	COG3312	ion transport
NJ56_RS06235	COG0356	it plays a direct role in the translocation of protons across the membrane
NJ56_RS06245	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
NJ56_RS06255	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
NJ56_RS06260	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
NJ56_RS06275	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NJ56_RS06290	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NJ56_RS06295	COG0573	inorganic phosphate transmembrane transporter activity
NJ56_RS06300	COG0581	inorganic phosphate transmembrane transporter activity
NJ56_RS06310	COG0704	Plays a role in the regulation of phosphate uptake
NJ56_RS06315	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_RS06320	COG0765	amino acid transport
NJ56_RS06325	COG0765	amino acid transport
NJ56_RS06330	COG2252	PERMEase
NJ56_RS06335	COG0840	transmembrane signaling receptor activity
NJ56_RS06345	COG3121	Chaperone
NJ56_RS06360	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
NJ56_RS06365	COG0706	membrane insertase activity
NJ56_RS06375	COG0594	ribonuclease P activity
NJ56_RS06380	COG0230	Belongs to the bacterial ribosomal protein bL34 family
NJ56_RS06395	COG0592	DNA-directed DNA polymerase activity
NJ56_RS06405	COG0187	DNA topoisomerase II activity
NJ56_RS06410	COG0561	phosphatase activity
NJ56_RS06415	COG0823	Involved in the tonB-independent uptake of proteins
NJ56_RS06420	COG5645	(Lipo)protein
NJ56_RS06435	COG0569	domain protein
NJ56_RS06435	COG2985	domain, Protein
NJ56_RS06440	COG3977	Valine--pyruvate aminotransferase
NJ56_RS06445	COG2885	chlorophyll binding
NJ56_RS06465	COG2818	Glycosylase
NJ56_RS06515	COG2213	PTS system mannitol-specific
NJ56_RS06515	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_RS06525	COG3722	fumarate hydratase activity
NJ56_RS06535	COG2258	MOSC domain
NJ56_RS06540	COG0840	transmembrane signaling receptor activity
NJ56_RS06545	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NJ56_RS06555	COG0243	molybdopterin cofactor binding
NJ56_RS06555	COG3383	formate dehydrogenase (NAD+) activity
NJ56_RS06560	COG0243	molybdopterin cofactor binding
NJ56_RS06560	COG3383	formate dehydrogenase (NAD+) activity
NJ56_RS06565	COG0437	4 iron, 4 sulfur cluster binding
NJ56_RS06570	COG2864	formate dehydrogenase
NJ56_RS06580	COG1921	L-seryl-tRNASec selenium transferase activity
NJ56_RS06585	COG3276	selenocysteine insertion sequence binding
NJ56_RS06590	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
NJ56_RS06600	COG3274	enterobacterial common antigen metabolic process
NJ56_RS06605	COG0582	viral genome integration into host DNA
NJ56_RS06625	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
NJ56_RS06630	COG2986	histidine ammonia-lyase
NJ56_RS06650	COG2194	sulfuric ester hydrolase activity
NJ56_RS06655	COG2197	response regulator
NJ56_RS06660	COG3851	Histidine kinase
NJ56_RS06665	COG2271	Major facilitator Superfamily
NJ56_RS06675	COG0747	negative chemotaxis
NJ56_RS06680	COG0601	transmembrane transport
NJ56_RS06685	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NJ56_RS06690	COG0444	Belongs to the ABC transporter superfamily
NJ56_RS06695	COG4608	Belongs to the ABC transporter superfamily
NJ56_RS06700	COG2194	sulfuric ester hydrolase activity
NJ56_RS06725	COG1215	transferase activity, transferring glycosyl groups
NJ56_RS06730	COG1215	transferase activity, transferring glycosyl groups
NJ56_RS06735	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
NJ56_RS06740	COG0457	Tetratricopeptide repeat
NJ56_RS06740	COG3118	belongs to the thioredoxin family
NJ56_RS06745	COG2199	diguanylate cyclase activity
NJ56_RS06745	COG2200	EAL domain
NJ56_RS06750	COG1301	dicarboxylic acid transport
NJ56_RS06755	COG0612	Peptidase, M16
NJ56_RS06760	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NJ56_RS06765	COG1942	4-Oxalocrotonate Tautomerase
NJ56_RS06770	COG2200	EAL domain
NJ56_RS06775	COG2134	cdp-diacylglycerol pyrophosphatase
NJ56_RS06780	COG1295	ribonuclease BN
NJ56_RS06790	COG1301	dicarboxylic acid transport
NJ56_RS06795	COG0626	cystathionine gamma-synthase activity
NJ56_RS06800	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NJ56_RS06805	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NJ56_RS06810	COG0339	signal peptide processing
NJ56_RS06815	COG0742	ribosomal rna small subunit methyltransferase
NJ56_RS06825	COG0589	response to stress
NJ56_RS06835	COG0306	phosphate transporter
NJ56_RS06840	COG2081	HI0933 family
NJ56_RS06850	COG1247	-acetyltransferase
NJ56_RS06855	COG1741	Belongs to the pirin family
NJ56_RS06860	COG1609	Transcriptional regulator
NJ56_RS06865	COG2610	gluconate transmembrane transporter activity
NJ56_RS06885	COG3265	gluconokinase activity
NJ56_RS06890	COG2095	MarC family integral membrane protein
NJ56_RS06895	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NJ56_RS06900	COG3275	phosphorelay sensor kinase activity
NJ56_RS06905	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NJ56_RS06910	COG1523	belongs to the glycosyl hydrolase 13 family
NJ56_RS06915	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
NJ56_RS06920	COG0297	glycogen (starch) synthase activity
NJ56_RS06925	COG0058	SHG alpha-glucan phosphorylase activity
NJ56_RS06930	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
NJ56_RS06935	COG1349	DNA-binding transcription factor activity
NJ56_RS06940	COG0705	Rhomboid family
NJ56_RS06950	COG2909	trisaccharide binding
NJ56_RS06955	COG0058	SHG alpha-glucan phosphorylase activity
NJ56_RS06960	COG1640	4-alpha-glucanotransferase
NJ56_RS06970	COG1040	competence protein
NJ56_RS06975	COG0596	Alpha beta hydrolase
NJ56_RS06995	COG1918	ferrous iron import across plasma membrane
NJ56_RS07000	COG2183	response to ionizing radiation
NJ56_RS07025	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NJ56_RS07040	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
NJ56_RS07050	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
NJ56_RS07055	COG1011	Hydrolase
NJ56_RS07065	COG0494	nUDIX hydrolase
NJ56_RS07070	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
NJ56_RS07095	COG4796	Type ii and iii secretion system protein
NJ56_RS07100	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
NJ56_RS07120	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
NJ56_RS07130	COG0180	Tryptophanyl-tRNA synthetase
NJ56_RS07150	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NJ56_RS07155	COG0402	S-adenosylhomocysteine deaminase activity
NJ56_RS07160	COG0738	Major facilitator superfamily
NJ56_RS07175	COG1609	Transcriptional regulator
NJ56_RS07180	COG1486	melibiose metabolic process
NJ56_RS07185	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NJ56_RS07200	COG1289	transmembrane transporter activity
NJ56_RS07205	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NJ56_RS07210	COG1765	OsmC-like protein
NJ56_RS07235	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NJ56_RS07240	COG3954	Phosphoribulokinase
NJ56_RS07250	COG0429	hydrolase of the alpha beta-hydrolase fold
NJ56_RS07260	COG0859	PFAM glycosyl transferase family 9
NJ56_RS07265	COG1216	Glycosyl transferase, family 2
NJ56_RS07270	COG0488	(ABC) transporter
NJ56_RS07275	COG2249	NAD(P)H dehydrogenase (quinone) activity
NJ56_RS07285	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
NJ56_RS07290	COG1047	Peptidyl-prolyl cis-trans
NJ56_RS07300	COG0545	Peptidyl-prolyl cis-trans isomerase
NJ56_RS07305	COG2964	Protein conserved in bacteria
NJ56_RS07315	COG2923	Belongs to the DsrF TusC family
NJ56_RS07320	COG2168	tRNA wobble position uridine thiolation
NJ56_RS07325	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
NJ56_RS07330	COG0049	tRNA binding
NJ56_RS07345	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NJ56_RS07360	COG0051	transcription antitermination factor activity, RNA binding
NJ56_RS07365	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
NJ56_RS07375	COG0089	rRNA binding
NJ56_RS07380	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
NJ56_RS07385	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
NJ56_RS07390	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
NJ56_RS07400	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
NJ56_RS07405	COG0255	Belongs to the universal ribosomal protein uL29 family
NJ56_RS07410	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NJ56_RS07415	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
NJ56_RS07425	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
NJ56_RS07450	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
NJ56_RS07455	COG1841	ribosomal large subunit assembly
NJ56_RS07460	COG0200	Binds to the 23S rRNA
NJ56_RS07465	COG0201	protein transport
NJ56_RS07470	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NJ56_RS07475	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
NJ56_RS07485	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
NJ56_RS07495	COG0203	ribosomal protein L17
NJ56_RS07500	COG0789	Transcriptional regulator
NJ56_RS07505	COG3036	rescue of stalled ribosome
NJ56_RS07510	COG1970	mechanosensitive ion channel activity
NJ56_RS07520	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NJ56_RS07520	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NJ56_RS07525	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
NJ56_RS07530	COG0242	peptide deformylase activity
NJ56_RS07535	COG0758	DNA mediated transformation
NJ56_RS07540	COG2922	Belongs to the Smg family
NJ56_RS07545	COG0551	DNA topoisomerase type I activity
NJ56_RS07550	COG0009	L-threonylcarbamoyladenylate synthase
NJ56_RS07560	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NJ56_RS07605	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NJ56_RS07640	COG0583	DNA-binding transcription factor activity
NJ56_RS07725	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NJ56_RS07755	COG3328	transposase activity
NJ56_RS07770	COG0527	aspartate kinase activity
NJ56_RS07780	COG3223	Belongs to the PsiE family
NJ56_RS07785	COG3833	ABC-type maltose transport systems, permease component
NJ56_RS07790	COG1175	transmembrane transport
NJ56_RS07795	COG2182	Extracellular solute-binding protein
NJ56_RS07810	COG4580	involved in the transport of maltose and maltodextrins
NJ56_RS07830	COG2937	Belongs to the GPAT DAPAT family
NJ56_RS07835	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
NJ56_RS07840	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NJ56_RS07845	COG0735	belongs to the Fur family
NJ56_RS07850	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NJ56_RS07860	COG0604	alcohol dehydrogenase
NJ56_RS07875	COG1448	Aminotransferase
NJ56_RS07880	COG2315	Protein conserved in bacteria
NJ56_RS07885	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
NJ56_RS07900	COG2252	PERMEase
NJ56_RS07905	COG0025	NhaP-type Na H and K H
NJ56_RS07910	COG0583	DNA-binding transcription factor activity
NJ56_RS07915	COG1380	Effector of murein hydrolase LrgA
NJ56_RS07920	COG1346	cytolysis
NJ56_RS07930	COG1560	Kdo2-lipid A biosynthetic process
NJ56_RS07940	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
NJ56_RS07945	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NJ56_RS07950	COG2264	protein methyltransferase activity
NJ56_RS07955	COG4145	pantothenate transmembrane transporter activity
NJ56_RS07960	COG3924	membrane
NJ56_RS07965	COG0439	Biotin carboxylase
NJ56_RS07970	COG0511	ligase activity, forming carbon-carbon bonds
NJ56_RS07980	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
NJ56_RS07985	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
NJ56_RS07990	COG0604	alcohol dehydrogenase
NJ56_RS07995	COG2200	EAL domain
NJ56_RS07995	COG2199	diguanylate cyclase activity
NJ56_RS08000	COG1077	Cell shape determining protein MreB Mrl
NJ56_RS08005	COG1792	Involved in formation and maintenance of cell shape
NJ56_RS08010	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
NJ56_RS08015	COG0424	maF-like protein
NJ56_RS08025	COG3164	Protein of unknown function
NJ56_RS08030	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJ56_RS08035	COG0312	modulator of DNA gyrase
NJ56_RS08040	COG0583	DNA-binding transcription factor activity
NJ56_RS08050	COG1566	PFAM secretion protein HlyD family protein
NJ56_RS08055	COG1289	transmembrane transporter activity
NJ56_RS08065	COG4290	ribonuclease
NJ56_RS08070	COG2732	(Barnase) inhibitor
NJ56_RS08075	COG3028	Belongs to the UPF0307 family
NJ56_RS08080	COG0312	modulator of DNA gyrase
NJ56_RS08085	COG3783	Cytochrome b(562)
NJ56_RS08090	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NJ56_RS08105	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
NJ56_RS08115	COG1263	PTS System
NJ56_RS08115	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_RS08120	COG0366	Alpha amylase catalytic
NJ56_RS08130	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
NJ56_RS08135	COG0540	Belongs to the ATCase OTCase family
NJ56_RS08140	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_RS08160	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
NJ56_RS08165	COG1137	ATPase activity
NJ56_RS08170	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
NJ56_RS08175	COG3117	lipopolysaccharide transmembrane transporter activity
NJ56_RS08180	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NJ56_RS08185	COG0517	IMP dehydrogenase activity
NJ56_RS08185	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
NJ56_RS08190	COG0530	calcium, potassium:sodium antiporter activity
NJ56_RS08195	COG1127	ABC transporter
NJ56_RS08200	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NJ56_RS08205	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NJ56_RS08210	COG2854	intermembrane phospholipid transfer
NJ56_RS08215	COG3113	response to antibiotic
NJ56_RS08220	COG5007	Belongs to the BolA IbaG family
NJ56_RS08225	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
NJ56_RS08235	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NJ56_RS08240	COG3105	Protein conserved in bacteria
NJ56_RS08245	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NJ56_RS08255	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
NJ56_RS08260	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
NJ56_RS08265	COG0625	glutathione transferase activity
NJ56_RS08270	COG2969	positive regulation of protein catabolic process
NJ56_RS08280	COG0493	'glutamate synthase
NJ56_RS08285	COG0069	glutamate synthase activity
NJ56_RS08285	COG0070	glutamate synthase
NJ56_RS08285	COG0067	glutamate synthase
NJ56_RS08290	COG1242	4 iron, 4 sulfur cluster binding
NJ56_RS08295	COG0784	Response regulator, receiver
NJ56_RS08295	COG2198	Histidine kinase
NJ56_RS08295	COG5002	protein histidine kinase activity
NJ56_RS08305	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
NJ56_RS08310	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NJ56_RS08315	COG2823	Periplasmic or secreted lipoprotein
NJ56_RS08320	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NJ56_RS08335	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
NJ56_RS08345	COG1741	Belongs to the pirin family
NJ56_RS08350	COG0583	DNA-binding transcription factor activity
NJ56_RS08355	COG2259	Doxx family
NJ56_RS08365	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
NJ56_RS08370	COG4575	ribosome binding
NJ56_RS08385	COG0586	Pfam SNARE associated Golgi protein
NJ56_RS08400	COG2271	Major facilitator Superfamily
NJ56_RS08415	COG2721	sulfolactate sulfo-lyase activity
NJ56_RS08425	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
NJ56_RS08430	COG0861	Integral membrane protein TerC family
NJ56_RS08435	COG0673	inositol 2-dehydrogenase activity
NJ56_RS08440	COG1451	nucleotide metabolic process
NJ56_RS08455	COG0446	pyridine nucleotide-disulphide oxidoreductase
NJ56_RS08455	COG1902	pentaerythritol trinitrate reductase activity
NJ56_RS08460	COG2831	hemolysin activation secretion protein
NJ56_RS08485	COG0358	DNA primase activity
NJ56_RS08490	COG4974	Belongs to the 'phage' integrase family
NJ56_RS08520	COG0358	DNA primase activity
NJ56_RS08530	COG0358	DNA primase activity
NJ56_RS08535	COG4974	Belongs to the 'phage' integrase family
NJ56_RS08590	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NJ56_RS08605	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_RS08635	COG0358	DNA primase activity
NJ56_RS08640	COG0828	Belongs to the bacterial ribosomal protein bS21 family
NJ56_RS08645	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
NJ56_RS08650	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
NJ56_RS08655	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NJ56_RS08660	COG1968	undecaprenyl-diphosphatase activity
NJ56_RS08665	COG0617	tRNA 3'-terminal CCA addition
NJ56_RS08670	COG4991	sh3 domain protein
NJ56_RS08675	COG3025	triphosphatase activity
NJ56_RS08685	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
NJ56_RS08685	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
NJ56_RS08700	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NJ56_RS08705	COG3384	dioxygenase
NJ56_RS08710	COG0754	glutathionylspermidine amidase activity
NJ56_RS08715	COG5463	Belongs to the UPF0441 family
NJ56_RS08720	COG1538	Outer membrane efflux protein
NJ56_RS08725	COG0494	nUDIX hydrolase
NJ56_RS08730	COG3151	Protein conserved in bacteria
NJ56_RS08735	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
NJ56_RS08740	COG3150	esterase
NJ56_RS08745	COG0187	DNA topoisomerase II activity
NJ56_RS08750	COG0583	DNA-binding transcription factor activity
NJ56_RS08755	COG2249	NAD(P)H dehydrogenase (quinone) activity
NJ56_RS08765	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
NJ56_RS08775	COG2132	Multicopper oxidase
NJ56_RS08785	COG0656	L-ascorbic acid biosynthetic process
NJ56_RS08790	COG1979	alcohol dehydrogenase
NJ56_RS08795	COG2207	Transcriptional regulator
NJ56_RS08800	COG0586	Pfam SNARE associated Golgi protein
NJ56_RS08805	COG0626	cystathionine gamma-synthase activity
NJ56_RS08810	COG0811	peptide transport
NJ56_RS08815	COG0848	biopolymer transport protein
NJ56_RS08865	COG4964	Belongs to the GSP D family
NJ56_RS08890	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
NJ56_RS08895	COG4774	siderophore transport
NJ56_RS08905	COG3251	PFAM MbtH domain protein
NJ56_RS08910	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NJ56_RS08920	COG1120	ATPase activity
NJ56_RS08925	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_RS08930	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_RS08940	COG4592	Periplasmic binding protein
NJ56_RS08945	COG1169	isochorismate synthase
NJ56_RS08950	COG1021	2,3-dihydroxybenzoate-AMP ligase
NJ56_RS08955	COG1535	isochorismatase
NJ56_RS08955	COG3433	isochorismatase activity
NJ56_RS08960	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_RS08975	COG0814	amino acid
NJ56_RS08980	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NJ56_RS08985	COG1882	Formate acetyltransferase
NJ56_RS08990	COG1105	Belongs to the carbohydrate kinase PfkB family
NJ56_RS09000	COG1349	DNA-binding transcription factor activity
NJ56_RS09005	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_RS09010	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_RS09015	COG3731	PTS system glucitol sorbitol-specific IIA component
NJ56_RS09020	COG3732	PTS system glucitol sorbitol-specific
NJ56_RS09025	COG3730	PTS system glucitol sorbitol-specific
NJ56_RS09050	COG0741	lytic transglycosylase activity
NJ56_RS09055	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
NJ56_RS09060	COG1194	a g-specific adenine glycosylase
NJ56_RS09070	COG3171	Protein conserved in bacteria
NJ56_RS09085	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NJ56_RS09090	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NJ56_RS09095	COG1872	DUF167
NJ56_RS09100	COG0762	integral membrane protein
NJ56_RS09105	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
NJ56_RS09110	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
NJ56_RS09115	COG2805	Type II/IV secretion system protein
NJ56_RS09125	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJ56_RS09130	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NJ56_RS09135	COG1678	Uncharacterized ACR, COG1678
NJ56_RS09140	COG0189	ligase activity
NJ56_RS09145	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NJ56_RS09150	COG2356	endonuclease I
NJ56_RS09155	COG3091	SprT-like family
NJ56_RS09160	COG0640	Transcriptional regulator
NJ56_RS09175	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
NJ56_RS09180	COG1166	arginine decarboxylase activity
NJ56_RS09190	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NJ56_RS09195	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NJ56_RS09200	COG0126	phosphoglycerate kinase activity
NJ56_RS09205	COG0191	fructose-bisphosphate aldolase activity
NJ56_RS09215	COG1279	arginine transmembrane transporter activity
NJ56_RS09230	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
NJ56_RS09235	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NJ56_RS09240	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
NJ56_RS09250	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
NJ56_RS09260	COG0006	proline dipeptidase activity
NJ56_RS09265	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJ56_RS09270	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NJ56_RS09275	COG0404	The glycine cleavage system catalyzes the degradation of glycine
NJ56_RS09295	COG1272	protein, Hemolysin III
NJ56_RS09305	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
NJ56_RS09315	COG0716	FMN binding
NJ56_RS09320	COG4974	Belongs to the 'phage' integrase family
NJ56_RS09325	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NJ56_RS09330	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
NJ56_RS09340	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
NJ56_RS09350	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NJ56_RS09355	COG1127	ABC transporter
NJ56_RS09385	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NJ56_RS09395	COG2165	general secretion pathway protein
NJ56_RS09450	COG0583	DNA-binding transcription factor activity
NJ56_RS09455	COG0583	DNA-binding transcription factor activity
NJ56_RS09465	COG1609	Transcriptional regulator
NJ56_RS09475	COG0318	PFAM AMP-dependent synthetase and ligase
NJ56_RS09475	COG0204	Acyl-transferase
NJ56_RS09480	COG0477	Major facilitator Superfamily
NJ56_RS09485	COG0667	Aldo Keto reductase
NJ56_RS09490	COG0861	Integral membrane protein TerC family
NJ56_RS09495	COG3066	DNA modification
NJ56_RS09510	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
NJ56_RS09515	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
NJ56_RS09545	COG4967	type IV pilus modification protein PilV
NJ56_RS09550	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
NJ56_RS09555	COG1025	Belongs to the peptidase M16 family
NJ56_RS09560	COG1074	ATP-dependent DNA helicase activity
NJ56_RS09565	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NJ56_RS09570	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NJ56_RS09570	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
NJ56_RS09575	COG0860	N-Acetylmuramoyl-L-alanine amidase
NJ56_RS09595	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
NJ56_RS09600	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NJ56_RS09605	COG2166	iron-sulfur cluster assembly
NJ56_RS09610	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NJ56_RS09620	COG0583	DNA-binding transcription factor activity
NJ56_RS09625	COG2363	Small membrane protein
NJ56_RS09630	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
NJ56_RS09640	COG1611	Belongs to the LOG family
NJ56_RS09655	COG3098	single-species biofilm formation
NJ56_RS09660	COG0564	pseudouridine synthase activity
NJ56_RS09675	COG2171	N-acyltransferase activity
NJ56_RS09680	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
NJ56_RS09695	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
NJ56_RS09700	COG0528	UMP kinase activity
NJ56_RS09720	COG0575	Belongs to the CDS family
NJ56_RS09725	COG0750	zinc metalloprotease
NJ56_RS09735	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
NJ56_RS09740	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NJ56_RS09760	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NJ56_RS09765	COG0587	DNA-directed DNA polymerase activity
NJ56_RS09770	COG0825	malonyl-CoA metabolic process
NJ56_RS09790	COG0346	lactoylglutathione lyase activity
NJ56_RS09805	COG4568	rho-dependent transcription termination
NJ56_RS09815	COG4681	YaeQ
NJ56_RS09825	COG3015	lipoprotein NlpE involved in copper resistance
NJ56_RS09830	COG0442	prolyl-tRNA aminoacylation
NJ56_RS09835	COG1720	tRNA m6t6A37 methyltransferase activity
NJ56_RS09845	COG1464	Belongs to the NlpA lipoprotein family
NJ56_RS09850	COG2011	ABC-type metal ion transport system permease component
NJ56_RS09860	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NJ56_RS09885	COG5544	Lipoprotein
NJ56_RS09890	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NJ56_RS09895	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJ56_RS09895	COG1042	CoA-binding domain protein
NJ56_RS09895	COG0045	succinate-CoA ligase (ADP-forming) activity
NJ56_RS09900	COG3148	PFAM DTW domain containing protein
NJ56_RS09905	COG3118	belongs to the thioredoxin family
NJ56_RS09910	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NJ56_RS09915	COG2814	Major facilitator Superfamily
NJ56_RS09920	COG1566	PFAM secretion protein HlyD family protein
NJ56_RS09930	COG1846	Transcriptional regulator
NJ56_RS09935	COG2814	Major facilitator Superfamily
NJ56_RS09945	COG2113	Glycine betaine
NJ56_RS09950	COG4176	ABC-type proline glycine betaine transport system permease component
NJ56_RS09955	COG4175	Glycine betaine
NJ56_RS09965	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NJ56_RS09970	COG1780	Probably involved in ribonucleotide reductase function
NJ56_RS10000	COG1278	Cold shock
NJ56_RS10005	COG0579	oxidoreductase
NJ56_RS10010	COG1304	FMN binding
NJ56_RS10015	COG1620	l-lactate permease
NJ56_RS10035	COG1129	ABC transporter
NJ56_RS10040	COG1172	Belongs to the binding-protein-dependent transport system permease family
NJ56_RS10050	COG1069	ribulokinase activity
NJ56_RS10125	COG0583	DNA-binding transcription factor activity
NJ56_RS10155	COG3121	Chaperone
NJ56_RS10250	COG0582	viral genome integration into host DNA
NJ56_RS10260	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
NJ56_RS10265	COG2867	negative regulation of translational initiation
NJ56_RS10275	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJ56_RS10280	COG0497	DNA recombination
NJ56_RS10285	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NJ56_RS10295	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
NJ56_RS10305	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
NJ56_RS10320	COG0513	Belongs to the DEAD box helicase family
NJ56_RS10330	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
NJ56_RS10340	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
NJ56_RS10350	COG3086	response to oxidative stress
NJ56_RS10355	COG0481	GTPase activity
NJ56_RS10370	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
NJ56_RS10380	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
NJ56_RS10390	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_RS10395	COG1737	Transcriptional regulator
NJ56_RS10405	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_RS10405	COG1263	PTS System
NJ56_RS10410	COG0560	Phosphoserine phosphatase
NJ56_RS10420	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
NJ56_RS10440	COG2205	protein histidine kinase activity
NJ56_RS10445	COG3170	Tfp pilus assembly protein FimV
NJ56_RS10450	COG2204	response regulator
NJ56_RS10455	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NJ56_RS10455	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NJ56_RS10460	COG0347	Belongs to the P(II) protein family
NJ56_RS10475	COG1735	metal-dependent hydrolase with the TIM-barrel fold
NJ56_RS10480	COG3457	Alanine racemase
NJ56_RS10490	COG2188	Transcriptional regulator
NJ56_RS10495	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NJ56_RS10495	COG1017	nitric oxide dioxygenase activity
NJ56_RS10505	COG2814	Major facilitator Superfamily
NJ56_RS10510	COG3711	transcriptional antiterminator
NJ56_RS10515	COG3683	transport system, periplasmic component
NJ56_RS10520	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
NJ56_RS10530	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
NJ56_RS10535	COG1959	2 iron, 2 sulfur cluster binding
NJ56_RS10545	COG0822	iron-sulfur transferase activity
NJ56_RS10560	COG0443	Heat shock 70 kDa protein
NJ56_RS10565	COG0633	Ferredoxin
NJ56_RS10570	COG2975	iron-sulfur cluster assembly
NJ56_RS10585	COG2373	Large extracellular alpha-helical protein
NJ56_RS10590	COG4953	penicillin-binding protein 1C
NJ56_RS10625	COG0124	histidyl-tRNA synthetase
NJ56_RS10630	COG2976	Protein conserved in bacteria
NJ56_RS10635	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NJ56_RS10645	COG1645	bacterial-type flagellum-dependent swarming motility
NJ56_RS10650	COG1570	exodeoxyribonuclease VII activity
NJ56_RS10655	COG0517	IMP dehydrogenase activity
NJ56_RS10655	COG0516	GMP reductase activity
NJ56_RS10660	COG0519	Catalyzes the synthesis of GMP from XMP
NJ56_RS10660	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NJ56_RS10700	COG0351	phosphomethylpyrimidine kinase
NJ56_RS10715	COG1597	lipid kinase activity
NJ56_RS10720	COG0826	peptidase U32
NJ56_RS10725	COG3422	double-strand break repair
NJ56_RS10730	COG0745	RESPONSE REGULATOR receiver
NJ56_RS10735	COG2205	protein histidine kinase activity
NJ56_RS10740	COG0477	Major facilitator Superfamily
NJ56_RS10745	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJ56_RS10755	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_RS10780	COG3121	Chaperone
NJ56_RS10790	COG0443	Heat shock 70 kDa protein
NJ56_RS10795	COG2239	Acts as a magnesium transporter
NJ56_RS10810	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
NJ56_RS10815	COG0573	inorganic phosphate transmembrane transporter activity
NJ56_RS10820	COG0581	inorganic phosphate transmembrane transporter activity
NJ56_RS10830	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJ56_RS10835	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
NJ56_RS10845	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
NJ56_RS10855	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
NJ56_RS10860	COG2233	PERMEase
NJ56_RS10865	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
NJ56_RS10870	COG1393	Belongs to the ArsC family
NJ56_RS10875	COG4783	chaperone-mediated protein folding
NJ56_RS10880	COG0628	permease
NJ56_RS10885	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NJ56_RS10890	COG2716	regulation of RNA biosynthetic process
NJ56_RS10895	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NJ56_RS10900	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
NJ56_RS10920	COG0400	carboxylic ester hydrolase activity
NJ56_RS10930	COG1876	peptidase activity
NJ56_RS10935	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NJ56_RS10940	COG1393	Belongs to the ArsC family
NJ56_RS10945	COG1605	Chorismate mutase
NJ56_RS10955	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NJ56_RS10965	COG2197	response regulator
NJ56_RS10975	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_RS10975	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_RS10980	COG3062	negative regulation of establishment of protein localization
NJ56_RS10985	COG0243	molybdopterin cofactor binding
NJ56_RS10990	COG3043	anaerobic respiration
NJ56_RS10995	COG3005	denitrification pathway
NJ56_RS11000	COG0494	nUDIX hydrolase
NJ56_RS11005	COG0280	phosphate acetyltransferase
NJ56_RS11005	COG0281	malic enzyme
NJ56_RS11010	COG1671	Belongs to the UPF0178 family
NJ56_RS11075	COG3111	PFAM Bacterial OB fold (BOF) protein
NJ56_RS11085	COG2837	iron assimilation
NJ56_RS11090	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NJ56_RS11105	COG2731	YhcH YjgK YiaL family protein
NJ56_RS11110	COG1737	Transcriptional regulator
NJ56_RS11120	COG4150	thiosulfate binding
NJ56_RS11125	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
NJ56_RS11130	COG4208	sulfate ABC transporter
NJ56_RS11140	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NJ56_RS11155	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_RS11165	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
NJ56_RS11175	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NJ56_RS11180	COG3530	Putative quorum-sensing-regulated virulence factor
NJ56_RS11245	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NJ56_RS11250	COG1914	H( )-stimulated, divalent metal cation uptake system
NJ56_RS11270	COG0837	glucose binding
NJ56_RS11275	COG2223	nitrite transmembrane transporter activity
NJ56_RS11280	COG3279	Response regulator of the LytR AlgR family
NJ56_RS11285	COG3275	phosphorelay sensor kinase activity
NJ56_RS11295	COG0436	Aminotransferase
NJ56_RS11300	COG3038	cytochrome b561
NJ56_RS11310	COG1598	PFAM Uncharacterised protein family UPF0150
NJ56_RS11315	COG2951	lytic endotransglycosylase activity
NJ56_RS11320	COG2824	Alkylphosphonate utilization operon protein PhnA
NJ56_RS11340	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJ56_RS11345	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJ56_RS11350	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NJ56_RS11355	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
NJ56_RS11360	COG1138	Cytochrome C-type biogenesis protein
NJ56_RS11365	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NJ56_RS11370	COG3088	subunit of a heme lyase
NJ56_RS11370	COG4235	cytochrome complex assembly
NJ56_RS11375	COG3088	subunit of a heme lyase
NJ56_RS11375	COG4235	cytochrome complex assembly
NJ56_RS11390	COG3691	Protein conserved in bacteria
NJ56_RS11395	COG0183	Belongs to the thiolase family
NJ56_RS11400	COG1250	3-hydroxyacyl-CoA dehydrogenase
NJ56_RS11400	COG1024	Enoyl-CoA hydratase
NJ56_RS11410	COG2062	phosphohistidine phosphatase, SixA
NJ56_RS11415	COG2840	Smr protein MutS2
NJ56_RS11420	COG2890	protein-(glutamine-N5) methyltransferase activity
NJ56_RS11430	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
NJ56_RS11435	COG0730	response to heat
NJ56_RS11440	COG3101	peptidyl-lysine hydroxylation
NJ56_RS11455	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NJ56_RS11485	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NJ56_RS11490	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NJ56_RS11515	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NJ56_RS11525	COG0586	Pfam SNARE associated Golgi protein
NJ56_RS11535	COG0285	dihydrofolate synthase activity
NJ56_RS11540	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
NJ56_RS11545	COG1286	toxin biosynthetic process
NJ56_RS11550	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
NJ56_RS11555	COG0163	prenyltransferase activity
NJ56_RS11565	COG4215	(ABC) transporter
NJ56_RS11570	COG4160	amino acid transport
NJ56_RS11580	COG1090	epimerase
NJ56_RS11585	COG0625	glutathione transferase activity
NJ56_RS11595	COG0622	Phosphoesterase
NJ56_RS11600	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
NJ56_RS11605	COG3037	sugar-specific permease SgaT UlaA
NJ56_RS11620	COG1609	Transcriptional regulator
NJ56_RS11625	COG0857	belongs to the CobB CobQ family
NJ56_RS11625	COG0280	phosphate acetyltransferase
NJ56_RS11635	COG3092	negative regulation of chromosome organization
NJ56_RS11640	COG3013	Belongs to the UPF0304 family
NJ56_RS11650	COG0490	domain, Protein
NJ56_RS11650	COG0471	metal ion transport
NJ56_RS11655	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
NJ56_RS11660	COG0436	Aminotransferase
NJ56_RS11670	COG0583	DNA-binding transcription factor activity
NJ56_RS11675	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_RS11680	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_RS11700	COG1034	ATP synthesis coupled electron transport
NJ56_RS11705	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
NJ56_RS11710	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_RS11715	COG0839	Belongs to the complex I subunit 6 family
NJ56_RS11725	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NJ56_RS11730	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_RS11745	COG4575	ribosome binding
NJ56_RS11750	COG1169	isochorismate synthase
NJ56_RS11755	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
NJ56_RS11760	COG0596	Alpha beta hydrolase
NJ56_RS11765	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
NJ56_RS11790	COG0814	amino acid
NJ56_RS11805	COG2246	polysaccharide biosynthetic process
NJ56_RS11815	COG4574	serine-type endopeptidase inhibitor activity
NJ56_RS11825	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NJ56_RS11835	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NJ56_RS11840	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NJ56_RS11850	COG0784	Response regulator, receiver
NJ56_RS11850	COG2205	protein histidine kinase activity
NJ56_RS11860	COG0642	Histidine kinase
NJ56_RS11860	COG2198	Histidine kinase
NJ56_RS11865	COG2223	nitrite transmembrane transporter activity
NJ56_RS11885	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJ56_RS11890	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
NJ56_RS11935	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
NJ56_RS11940	COG5532	Uncharacterized conserved protein (DUF2303)
NJ56_RS11985	COG1802	Transcriptional regulator
NJ56_RS11985	COG4626	Terminase
NJ56_RS11990	COG4725	Belongs to the MT-A70-like family
NJ56_RS12010	COG1403	HNH endonuclease
NJ56_RS12025	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
NJ56_RS12040	COG3179	chitinase
NJ56_RS12055	COG3646	Phage regulatory protein
NJ56_RS12070	COG4626	Terminase
NJ56_RS12070	COG1802	Transcriptional regulator
NJ56_RS12115	COG4386	tail sheath protein
NJ56_RS12160	COG3299	homolog of phage Mu protein gp47
NJ56_RS12165	COG3778	Protein conserved in bacteria
NJ56_RS12195	COG3083	sulfuric ester hydrolase activity
NJ56_RS12200	COG3082	Protein of unknown function (DUF1414)
NJ56_RS12215	COG1061	Type III restriction enzyme res subunit
NJ56_RS12220	COG1187	pseudouridine synthase activity
NJ56_RS12225	COG2814	Major facilitator Superfamily
NJ56_RS12235	COG4172	Belongs to the ABC transporter superfamily
NJ56_RS12240	COG4239	(ABC) transporter, permease
NJ56_RS12245	COG4174	ABC transporter (Permease)
NJ56_RS12250	COG4166	transmembrane transport
NJ56_RS12255	COG2200	EAL domain
NJ56_RS12260	COG0791	NLP P60 protein
NJ56_RS12265	COG0671	phosphoesterase, PA-phosphatase related
NJ56_RS12270	COG0523	cobalamin synthesis protein
NJ56_RS12285	COG0246	Mannitol dehydrogenase
NJ56_RS12300	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NJ56_RS12315	COG0243	molybdopterin cofactor binding
NJ56_RS12320	COG3005	denitrification pathway
NJ56_RS12335	COG1105	Belongs to the carbohydrate kinase PfkB family
NJ56_RS12340	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
NJ56_RS12340	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NJ56_RS12340	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NJ56_RS12345	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
NJ56_RS12350	COG2855	membrane
NJ56_RS12365	COG0583	DNA-binding transcription factor activity
NJ56_RS12370	COG0833	amino acid
NJ56_RS12380	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_RS12390	COG4771	TonB-dependent receptor
NJ56_RS12400	COG0531	amino acid
NJ56_RS12405	COG2925	Exonuclease
NJ56_RS12415	COG1289	transmembrane transporter activity
NJ56_RS12435	COG3621	Patatin-like phospholipase
NJ56_RS12490	COG4227	nucleotidyltransferase activity
NJ56_RS12510	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
NJ56_RS12525	COG3736	Type IV secretory pathway, component VirB8
NJ56_RS12545	COG3451	type IV secretory pathway VirB4
NJ56_RS12580	COG3423	Transcriptional regulator
NJ56_RS12595	COG0582	viral genome integration into host DNA
NJ56_RS12610	COG3842	ATPase activity
NJ56_RS12620	COG1840	ABC-type Fe3 transport system, periplasmic component
NJ56_RS12625	COG2271	Major facilitator Superfamily
NJ56_RS12640	COG4565	transcriptional regulatory protein
NJ56_RS12645	COG3290	protein histidine kinase activity
NJ56_RS12650	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
NJ56_RS12655	COG3052	prosthetic group binding
NJ56_RS12660	COG2301	Belongs to the HpcH HpaI aldolase family
NJ56_RS12665	COG3051	citrate lyase alpha subunit
NJ56_RS12680	COG0471	metal ion transport
NJ56_RS12725	COG3321	synthase
NJ56_RS12725	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_RS12725	COG0604	alcohol dehydrogenase
NJ56_RS12735	COG1609	Transcriptional regulator
NJ56_RS12755	COG0840	transmembrane signaling receptor activity
NJ56_RS12760	COG1285	pathogenesis
NJ56_RS12770	COG0589	response to stress
NJ56_RS12795	COG1360	Flagellar Motor Protein
NJ56_RS12800	COG2198	Histidine kinase
NJ56_RS12800	COG0643	Histidine kinase
NJ56_RS12805	COG0835	chemotaxis
NJ56_RS12810	COG0840	transmembrane signaling receptor activity
NJ56_RS12815	COG0840	transmembrane signaling receptor activity
NJ56_RS12820	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NJ56_RS12830	COG0745	RESPONSE REGULATOR receiver
NJ56_RS12835	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
NJ56_RS12865	COG3539	Fimbrial protein
NJ56_RS12875	COG3121	Chaperone
NJ56_RS12880	COG3188	usher protein
NJ56_RS12900	COG2197	response regulator
NJ56_RS12905	COG1404	Belongs to the peptidase S8 family
NJ56_RS12905	COG4935	Belongs to the peptidase S8 family
NJ56_RS12910	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NJ56_RS12915	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NJ56_RS12925	COG3418	PFAM FlgN family protein
NJ56_RS12930	COG2747	anti-sigma28 factor FlgM
NJ56_RS12940	COG1815	bacterial-type flagellum-dependent cell motility
NJ56_RS12945	COG1558	bacterial-type flagellum-dependent cell motility
NJ56_RS13025	COG1580	Controls the rotational direction of flagella during chemotaxis
NJ56_RS13045	COG1157	protein secretion by the type III secretion system
NJ56_RS13055	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
NJ56_RS13065	COG1677	Flagellar hook-basal body complex protein FliE
NJ56_RS13080	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NJ56_RS13085	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NJ56_RS13125	COG1191	sigma factor activity
NJ56_RS13135	COG2515	1-aminocyclopropane-1-carboxylate deaminase
NJ56_RS13140	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_RS13145	COG0765	amino acid transport
NJ56_RS13150	COG1126	abc transporter atp-binding protein
NJ56_RS13155	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NJ56_RS13155	COG0506	proline dehydrogenase activity
NJ56_RS13155	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
NJ56_RS13160	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NJ56_RS13165	COG3710	Transcriptional regulator
NJ56_RS13170	COG0531	amino acid
NJ56_RS13180	COG1113	amino acid transport
NJ56_RS13190	COG0582	viral genome integration into host DNA
NJ56_RS13205	COG2197	response regulator
NJ56_RS13210	COG0322	excinuclease ABC activity
NJ56_RS13215	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NJ56_RS13275	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
NJ56_RS13310	COG2856	Zn peptidase
NJ56_RS13380	COG4695	Portal protein
NJ56_RS13430	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NJ56_RS13435	COG4974	Belongs to the 'phage' integrase family
NJ56_RS13545	COG2801	Transposase and inactivated derivatives
NJ56_RS13550	COG0840	transmembrane signaling receptor activity
NJ56_RS13585	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
NJ56_RS13595	COG2153	protein acetylation
NJ56_RS13630	COG0531	amino acid
NJ56_RS13635	COG0076	glutamate decarboxylase activity
NJ56_RS13650	COG2235	arginine
NJ56_RS13665	COG1757	Na H antiporter
NJ56_RS13670	COG3122	Protein conserved in bacteria
NJ56_RS13680	COG1187	pseudouridine synthase activity
NJ56_RS13690	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
NJ56_RS13695	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
NJ56_RS13700	COG2723	6-phospho-beta-galactosidase activity
NJ56_RS13705	COG1447	Phosphotransferase system cellobiose-specific component IIA
NJ56_RS13710	COG1917	Cupin 2, conserved barrel domain protein
NJ56_RS13710	COG2169	Transcriptional regulator
NJ56_RS13740	COG1278	Cold shock
NJ56_RS13745	COG1278	Cold shock
NJ56_RS13750	COG1278	Cold shock
NJ56_RS13770	COG1181	Belongs to the D-alanine--D-alanine ligase family
NJ56_RS13790	COG5001	Diguanylate cyclase
NJ56_RS13790	COG4251	negative regulation of phosphorylation
NJ56_RS13790	COG3706	GGDEF domain
NJ56_RS13790	COG2203	Gaf domain
NJ56_RS13800	COG1132	(ABC) transporter
NJ56_RS13810	COG2207	Transcriptional regulator
NJ56_RS13845	COG1113	amino acid transport
NJ56_RS13865	COG1496	oxidoreductase activity
NJ56_RS13870	COG0768	penicillin binding
NJ56_RS13875	COG2226	methyltransferase
NJ56_RS13905	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
NJ56_RS13915	COG1960	acyl-CoA dehydrogenase activity
NJ56_RS13935	COG1971	Probably functions as a manganese efflux pump
NJ56_RS13940	COG4811	Protein of unknown function (DUF986)
NJ56_RS13945	COG3716	PTS system mannose fructose sorbose family IID component
NJ56_RS13950	COG3715	PTS system
NJ56_RS13955	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_RS13955	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
NJ56_RS13960	COG1253	flavin adenine dinucleotide binding
NJ56_RS13965	COG1760	l-serine dehydratase
NJ56_RS13970	COG0494	nUDIX hydrolase
NJ56_RS13990	COG0513	Belongs to the DEAD box helicase family
NJ56_RS13995	COG3141	response to X-ray
NJ56_RS14000	COG3097	Belongs to the UPF0267 family
NJ56_RS14015	COG1770	oligopeptidase
NJ56_RS14020	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NJ56_RS14035	COG1528	Iron-storage protein
NJ56_RS14040	COG2372	response to copper ion
NJ56_RS14045	COG1276	copper resistance
NJ56_RS14115	COG5001	Diguanylate cyclase
NJ56_RS14115	COG4251	negative regulation of phosphorylation
NJ56_RS14115	COG3706	GGDEF domain
NJ56_RS14115	COG2203	Gaf domain
NJ56_RS14120	COG3008	intermembrane lipid transfer
NJ56_RS14125	COG2995	paraquat-inducible protein a
NJ56_RS14130	COG1956	GAF domain-containing protein
NJ56_RS14140	COG0793	Belongs to the peptidase S41A family
NJ56_RS14145	COG0501	Belongs to the peptidase M48B family
NJ56_RS14155	COG2814	Major facilitator Superfamily
NJ56_RS14165	COG3023	N-Acetylmuramoyl-L-alanine amidase
NJ56_RS14170	COG1823	symporter activity
NJ56_RS14175	COG1988	membrane-bound metal-dependent
NJ56_RS14180	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NJ56_RS14190	COG3001	Fructosamine kinase
NJ56_RS14195	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NJ56_RS14200	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NJ56_RS14205	COG1121	(ABC) transporter
NJ56_RS14210	COG0803	Belongs to the bacterial solute-binding protein 9 family
NJ56_RS14285	COG0776	regulation of translation
NJ56_RS14290	COG2314	TM2 domain
NJ56_RS14305	COG2184	nucleotidyltransferase activity
NJ56_RS14325	COG4974	Belongs to the 'phage' integrase family
NJ56_RS14330	COG4139	cobalamin transport
NJ56_RS14340	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NJ56_RS14345	COG0463	Glycosyl transferase, family 2
NJ56_RS14360	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
NJ56_RS14365	COG2076	Multidrug Resistance protein
NJ56_RS14370	COG2076	Multidrug Resistance protein
NJ56_RS14375	COG0791	NLP P60 protein
NJ56_RS14380	COG0095	Lipoate-protein ligase
NJ56_RS14390	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
NJ56_RS14395	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NJ56_RS14400	COG4558	Periplasmic binding protein
NJ56_RS14405	COG3720	iron ion transport
NJ56_RS14410	COG4771	TonB-dependent receptor
NJ56_RS14420	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NJ56_RS14425	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
NJ56_RS14430	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NJ56_RS14430	COG0574	Belongs to the PEP-utilizing enzyme family
NJ56_RS14440	COG0628	permease
NJ56_RS14445	COG0277	FAD linked oxidase domain protein
NJ56_RS14445	COG0247	lactate metabolic process
NJ56_RS14450	COG2050	protein possibly involved in aromatic compounds catabolism
NJ56_RS14455	COG0316	Belongs to the HesB IscA family
NJ56_RS14460	COG0719	Fe-S assembly protein
NJ56_RS14465	COG0396	ATPase activity
NJ56_RS14470	COG0719	Fe-S assembly protein
NJ56_RS14480	COG2166	iron-sulfur cluster assembly
NJ56_RS14485	COG1376	ErfK ybiS ycfS ynhG family protein
NJ56_RS14485	COG1388	LysM domain
NJ56_RS14520	COG0307	riboflavin synthase, alpha
NJ56_RS14525	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NJ56_RS14530	COG2814	Major facilitator Superfamily
NJ56_RS14535	COG0583	DNA-binding transcription factor activity
NJ56_RS14540	COG1609	Transcriptional regulator
NJ56_RS14550	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NJ56_RS14555	COG0791	NLP P60 protein
NJ56_RS14560	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NJ56_RS14575	COG1902	pentaerythritol trinitrate reductase activity
NJ56_RS14580	COG1309	transcriptional regulator
NJ56_RS14585	COG2194	sulfuric ester hydrolase activity
NJ56_RS14590	COG3313	Fe-S protein
NJ56_RS14595	COG4989	oxidoreductase activity
NJ56_RS14605	COG1846	Transcriptional regulator
NJ56_RS14610	COG3133	Outer membrane lipoprotein
NJ56_RS14615	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
NJ56_RS14660	COG0484	heat shock protein binding
NJ56_RS14670	COG3104	oligopeptide transport
NJ56_RS14680	COG4172	Belongs to the ABC transporter superfamily
NJ56_RS14685	COG4172	Belongs to the ABC transporter superfamily
NJ56_RS14690	COG4171	peptide transport system, permease
NJ56_RS14700	COG4166	transmembrane transport
NJ56_RS14720	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
NJ56_RS14725	COG1842	Phage shock protein A
NJ56_RS14735	COG1983	PspC domain protein
NJ56_RS14745	COG3106	COG3106 Predicted ATPase
NJ56_RS14750	COG3768	UPF0283 membrane protein
NJ56_RS14755	COG5654	RES domain protein
NJ56_RS14760	COG5642	Protein of unknown function (DUF2384)
NJ56_RS14770	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
NJ56_RS14775	COG4948	Mandelate Racemase Muconate Lactonizing
NJ56_RS14780	COG2866	Carboxypeptidase
NJ56_RS14785	COG4166	transmembrane transport
NJ56_RS14800	COG0674	pyruvate-flavodoxin oxidoreductase activity
NJ56_RS14800	COG1013	pyruvate-flavodoxin oxidoreductase activity
NJ56_RS14800	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_RS14800	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
NJ56_RS14810	COG1285	pathogenesis
NJ56_RS14815	COG3042	response to heat
NJ56_RS14820	COG3187	Heat shock protein
NJ56_RS14825	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NJ56_RS14830	COG2911	Protein conserved in bacteria
NJ56_RS14845	COG3784	Protein of unknown function (DUF1318)
NJ56_RS14850	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
NJ56_RS14860	COG1643	Atp-dependent helicase
NJ56_RS14865	COG3591	Belongs to the peptidase S1B family
NJ56_RS14875	COG1881	PFAM PEBP family protein
NJ56_RS14880	COG2207	Transcriptional regulator
NJ56_RS14895	COG2205	protein histidine kinase activity
NJ56_RS14900	COG0745	RESPONSE REGULATOR receiver
NJ56_RS14910	COG0531	amino acid
NJ56_RS14920	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
NJ56_RS14925	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
NJ56_RS14930	COG3623	hexulose-6-phosphate isomerase
NJ56_RS14935	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
NJ56_RS14965	COG0589	response to stress
NJ56_RS14970	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NJ56_RS14975	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NJ56_RS14980	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
NJ56_RS14990	COG1011	Hydrolase
NJ56_RS15030	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NJ56_RS15055	COG3023	N-Acetylmuramoyl-L-alanine amidase
NJ56_RS15060	COG4221	oxidoreductase activity
NJ56_RS15065	COG1742	UPF0060 membrane protein
NJ56_RS15085	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
NJ56_RS15090	COG1940	carbohydrate kinase activity
NJ56_RS15100	COG0114	fumarate hydratase activity
NJ56_RS15105	COG1482	cell wall glycoprotein biosynthetic process
NJ56_RS15110	COG5339	Protein conserved in bacteria
NJ56_RS15115	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NJ56_RS15120	COG0385	Bile acid
NJ56_RS15125	COG0673	inositol 2-dehydrogenase activity
NJ56_RS15135	COG2759	Belongs to the formate--tetrahydrofolate ligase family
NJ56_RS15145	COG4657	Part of a membrane complex involved in electron transport
NJ56_RS15160	COG2207	Transcriptional regulator
NJ56_RS15160	COG3708	Transcriptional regulator
NJ56_RS15170	COG4659	FMN binding
NJ56_RS15180	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NJ56_RS15185	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
NJ56_RS15190	COG5002	protein histidine kinase activity
NJ56_RS15190	COG5001	Diguanylate cyclase
NJ56_RS15190	COG3447	MASE1 domain protein
NJ56_RS15195	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NJ56_RS15205	COG0023	Translation Initiation Factor
NJ56_RS15225	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
NJ56_RS15230	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
NJ56_RS15235	COG0671	phosphoesterase, PA-phosphatase related
NJ56_RS15245	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
NJ56_RS15260	COG0583	DNA-binding transcription factor activity
NJ56_RS15280	COG0616	signal peptide processing
NJ56_RS15285	COG1028	Short-chain dehydrogenase reductase Sdr
NJ56_RS15295	COG1187	pseudouridine synthase activity
NJ56_RS15300	COG0009	L-threonylcarbamoyladenylate synthase
NJ56_RS15305	COG0613	PHP domain protein
NJ56_RS15315	COG0512	Glutamine amidotransferase of anthranilate synthase
NJ56_RS15325	COG0135	phosphoribosylanthranilate isomerase activity
NJ56_RS15325	COG0134	indole-3-glycerol-phosphate synthase activity
NJ56_RS15330	COG0133	tryptophan synthase activity
NJ56_RS15345	COG3047	cAMP biosynthetic process
NJ56_RS15350	COG0727	PFAM Uncharacterised protein family (UPF0153)
NJ56_RS15375	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
NJ56_RS15410	COG3710	Transcriptional regulator
NJ56_RS15425	COG2350	Protein conserved in bacteria
NJ56_RS15445	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NJ56_RS15450	COG3099	Belongs to the UPF0263 family
NJ56_RS15465	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NJ56_RS15480	COG4166	transmembrane transport
NJ56_RS15490	COG2095	MarC family integral membrane protein
NJ56_RS15500	COG1454	alcohol dehydrogenase
NJ56_RS15500	COG1012	belongs to the aldehyde dehydrogenase family
NJ56_RS15520	COG0745	RESPONSE REGULATOR receiver
NJ56_RS15525	COG1752	Esterase of the alpha-beta hydrolase superfamily
NJ56_RS15535	COG0788	formyltetrahydrofolate deformylase activity
NJ56_RS15565	COG0708	Exodeoxyribonuclease III
NJ56_RS15570	COG0494	nUDIX hydrolase
NJ56_RS15580	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NJ56_RS15590	COG0778	Nitroreductase
NJ56_RS15595	COG0616	signal peptide processing
NJ56_RS15600	COG0252	asparaginase activity
NJ56_RS15605	COG1335	isochorismatase
NJ56_RS15610	COG3139	Protein of unknown function (DUF1315)
NJ56_RS15615	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NJ56_RS15630	COG2194	sulfuric ester hydrolase activity
NJ56_RS15635	COG2194	sulfuric ester hydrolase activity
NJ56_RS15640	COG3713	MltA-interacting MipA family protein
NJ56_RS15650	COG2766	serine protein kinase
NJ56_RS15655	COG2718	Belongs to the UPF0229 family
NJ56_RS15675	COG2199	diguanylate cyclase activity
NJ56_RS15675	COG2202	Pas domain
NJ56_RS15675	COG2200	EAL domain
NJ56_RS15685	COG2814	Major facilitator Superfamily
NJ56_RS15690	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NJ56_RS15695	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NJ56_RS15700	COG2719	SpoVR family
NJ56_RS15710	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NJ56_RS15730	COG2983	Belongs to the UPF0260 family
NJ56_RS15735	COG0179	Fumarylacetoacetate (FAA) hydrolase
NJ56_RS15740	COG3100	YcgL domain-containing protein
NJ56_RS15745	COG0850	regulation of cytokinetic process
NJ56_RS15750	COG2894	cell division
NJ56_RS15755	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
NJ56_RS15760	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
NJ56_RS15765	COG0318	PFAM AMP-dependent synthetase and ligase
NJ56_RS15770	COG3065	identical protein binding
NJ56_RS15775	COG1214	PFAM Peptidase M22, glycoprotease
NJ56_RS15780	COG1199	ATP-dependent helicase activity
NJ56_RS15785	COG0251	oxidation-reduction process
NJ56_RS15790	COG2076	Multidrug Resistance protein
NJ56_RS15800	COG0800	Aldolase
NJ56_RS15805	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NJ56_RS15810	COG1737	Transcriptional regulator
NJ56_RS15815	COG0469	pyruvate kinase activity
NJ56_RS15820	COG1560	Kdo2-lipid A biosynthetic process
NJ56_RS15825	COG0739	heme binding
NJ56_RS15830	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
NJ56_RS15835	COG1121	(ABC) transporter
NJ56_RS15840	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NJ56_RS15845	COG3104	oligopeptide transport
NJ56_RS15850	COG2255	four-way junction helicase activity
NJ56_RS15860	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
NJ56_RS15870	COG0494	nUDIX hydrolase
NJ56_RS15875	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
NJ56_RS15885	COG1801	Protein of unknown function DUF72
NJ56_RS15890	COG3788	relative of glutathione S-transferase, MAPEG superfamily
NJ56_RS15905	COG3142	Participates in the control of copper homeostasis
NJ56_RS15910	COG3102	Protein conserved in bacteria
NJ56_RS15935	COG0728	peptidoglycan biosynthetic process
NJ56_RS15940	COG0673	inositol 2-dehydrogenase activity
NJ56_RS15950	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NJ56_RS15970	COG3381	protein complex oligomerization
NJ56_RS15980	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NJ56_RS16005	COG3706	GGDEF domain
NJ56_RS16010	COG0659	secondary active sulfate transmembrane transporter activity
NJ56_RS16015	COG2877	3-deoxy-8-phosphooctulonate synthase activity
NJ56_RS16030	COG2890	protein-(glutamine-N5) methyltransferase activity
NJ56_RS16035	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
NJ56_RS16040	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
NJ56_RS16045	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
NJ56_RS16055	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NJ56_RS16065	COG0193	aminoacyl-tRNA hydrolase activity
NJ56_RS16075	COG0012	GTP binding
NJ56_RS16090	COG0309	Hydrogenase expression formation protein (HypE)
NJ56_RS16095	COG0409	Hydrogenase expression formation protein
NJ56_RS16100	COG0298	carbon dioxide binding
NJ56_RS16105	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
NJ56_RS16110	COG0375	protein maturation
NJ56_RS16120	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_RS16125	COG0651	ATP synthesis coupled electron transport
NJ56_RS16130	COG0650	Formate hydrogenlyase subunit 4
NJ56_RS16135	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
NJ56_RS16135	COG3261	NADH dehydrogenase
NJ56_RS16140	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NJ56_RS16145	COG3260	NADH ubiquinone oxidoreductase 20
NJ56_RS16155	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
NJ56_RS16160	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
NJ56_RS16165	COG3383	formate dehydrogenase (NAD+) activity
NJ56_RS16170	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
NJ56_RS16175	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
NJ56_RS16195	COG0402	S-adenosylhomocysteine deaminase activity
NJ56_RS16205	COG1228	amidohydrolase
NJ56_RS16225	COG3724	N-succinylarginine dihydrolase activity
NJ56_RS16235	COG3138	arginine N-succinyltransferase
NJ56_RS16240	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NJ56_RS16245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NJ56_RS16250	COG1271	oxidase subunit
NJ56_RS16255	COG1294	oxidase, subunit
NJ56_RS16265	COG3850	Histidine kinase
NJ56_RS16270	COG2375	cellular response to nickel ion
NJ56_RS16275	COG0387	Pfam Sodium calcium exchanger
NJ56_RS16280	COG1702	phosphate starvation-inducible protein PhoH
NJ56_RS16285	COG4977	sequence-specific DNA binding
NJ56_RS16325	COG0471	metal ion transport
NJ56_RS16330	COG3290	protein histidine kinase activity
NJ56_RS16335	COG4565	transcriptional regulatory protein
NJ56_RS16340	COG3493	citrate carrier protein
NJ56_RS16345	COG0840	transmembrane signaling receptor activity
NJ56_RS16350	COG0339	signal peptide processing
NJ56_RS16355	COG2723	6-phospho-beta-galactosidase activity
NJ56_RS16360	COG3916	Acyl-homoserine-lactone synthase
NJ56_RS16365	COG2771	luxR family
NJ56_RS16370	COG0538	isocitrate dehydrogenase activity
NJ56_RS16375	COG1187	pseudouridine synthase activity
NJ56_RS16385	COG0482	sulfurtransferase activity
NJ56_RS16395	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
NJ56_RS16405	COG0745	RESPONSE REGULATOR receiver
NJ56_RS16410	COG2205	protein histidine kinase activity
NJ56_RS16415	COG2850	peptidyl-arginine hydroxylation
NJ56_RS16435	COG4591	ABC-type transport system involved in lipoprotein release permease component
NJ56_RS16445	COG4591	ABC-type transport system involved in lipoprotein release permease component
NJ56_RS16455	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NJ56_RS16460	COG3134	Outer membrane lipoprotein
NJ56_RS16465	COG1252	NADH dehydrogenase
NJ56_RS16470	COG3150	esterase
NJ56_RS16485	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
NJ56_RS16490	COG5633	Lipoprotein
NJ56_RS16495	COG0537	adenosine 5'-monophosphoramidase activity
NJ56_RS16500	COG1263	PTS System
NJ56_RS16500	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NJ56_RS16505	COG0084	hydrolase, TatD family'
NJ56_RS16510	COG0470	DNA polymerase III
NJ56_RS16515	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
NJ56_RS16520	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NJ56_RS16525	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NJ56_RS16530	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NJ56_RS16535	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NJ56_RS16545	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
NJ56_RS16550	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NJ56_RS16560	COG0333	Belongs to the bacterial ribosomal protein bL32 family
NJ56_RS16565	COG1399	metal-binding, possibly nucleic acid-binding protein
NJ56_RS16570	COG0424	maF-like protein
NJ56_RS16575	COG0564	pseudouridine synthase activity
NJ56_RS16585	COG1530	ribonuclease E activity
NJ56_RS16595	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
NJ56_RS16600	COG0418	dihydroorotase activity
NJ56_RS16625	COG0628	permease
NJ56_RS16635	COG1560	Kdo2-lipid A biosynthetic process
NJ56_RS16655	COG2943	transferase activity, transferring hexosyl groups
NJ56_RS16660	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
NJ56_RS16680	COG0288	reversible hydration of carbon dioxide
NJ56_RS16690	COG2920	part of a sulfur-relay system
NJ56_RS16695	COG1254	Belongs to the acylphosphatase family
NJ56_RS16700	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NJ56_RS16705	COG3785	DNA binding
NJ56_RS16710	COG1832	CoA-binding protein
NJ56_RS16720	COG1803	Methylglyoxal synthase
NJ56_RS16725	COG0210	DNA helicase
NJ56_RS16730	COG3304	Inner membrane component domain
NJ56_RS16735	COG1289	transmembrane transporter activity
NJ56_RS16740	COG3070	regulator of competence-specific genes
NJ56_RS16745	COG5404	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division
NJ56_RS16755	COG3120	sequence-specific DNA binding
NJ56_RS16760	COG1067	ATP-dependent peptidase activity
NJ56_RS16765	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NJ56_RS16770	COG3130	regulation of translation
NJ56_RS16775	COG3009	Protein conserved in bacteria
NJ56_RS16780	COG3008	intermembrane lipid transfer
NJ56_RS16780	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NJ56_RS16785	COG2995	paraquat-inducible protein a
NJ56_RS16790	COG0488	(ABC) transporter
NJ56_RS16795	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NJ56_RS16795	COG0116	Belongs to the methyltransferase superfamily
NJ56_RS16800	COG0633	Ferredoxin
NJ56_RS16800	COG3217	Mosc domain protein beta barrel domain protein
NJ56_RS16810	COG0167	dihydroorotate dehydrogenase activity
NJ56_RS16815	COG0308	aminopeptidase N
NJ56_RS16820	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
NJ56_RS16835	COG1448	Aminotransferase
NJ56_RS16840	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NJ56_RS16845	COG3108	Peptidase M15
NJ56_RS16850	COG2989	Protein conserved in bacteria
NJ56_RS16855	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
NJ56_RS16865	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
NJ56_RS16870	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NJ56_RS16875	COG1434	Gram-negative-bacterium-type cell wall biogenesis
NJ56_RS16880	COG3173	Aminoglycoside phosphotransferase
NJ56_RS16885	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
NJ56_RS16890	COG2835	tetraacyldisaccharide 4'-kinase activity
NJ56_RS16895	COG1278	Cold shock
NJ56_RS16905	COG5383	Protein conserved in bacteria
NJ56_RS16910	COG1663	tetraacyldisaccharide 4'-kinase activity
NJ56_RS16920	COG2333	competence protein COMEC
NJ56_RS16920	COG0658	competence protein
NJ56_RS16930	COG0539	negative regulation of cytoplasmic translation
NJ56_RS16940	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
NJ56_RS16950	COG0252	asparaginase activity
NJ56_RS16955	COG1944	ATP diphosphatase activity
NJ56_RS16960	COG2116	formate transmembrane transporter activity
NJ56_RS16965	COG1882	Formate acetyltransferase
NJ56_RS16970	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
NJ56_RS16975	COG2814	Major facilitator Superfamily
NJ56_RS16980	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
NJ56_RS16985	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NJ56_RS16990	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
NJ56_RS16995	COG1674	ftsk spoiiie
NJ56_RS16995	COG3107	peptidoglycan biosynthetic process
NJ56_RS17000	COG1522	sequence-specific DNA binding
NJ56_RS17005	COG0492	ferredoxin-NADP+ reductase activity
NJ56_RS17015	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
NJ56_RS17025	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
NJ56_RS17030	COG0542	response to heat
NJ56_RS17035	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
NJ56_RS17040	COG1278	Cold shock
NJ56_RS17050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NJ56_RS17055	COG2990	Protein conserved in bacteria
NJ56_RS17060	COG3593	DNA synthesis involved in DNA repair
NJ56_RS17065	COG2431	L-lysine efflux transmembrane transporter activity
NJ56_RS17070	COG1151	hydroxylamine reductase activity
NJ56_RS17075	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NJ56_RS17080	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
NJ56_RS17085	COG0702	epimerase
NJ56_RS17090	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NJ56_RS17095	COG0393	Putative heavy-metal-binding
NJ56_RS17105	COG1126	abc transporter atp-binding protein
NJ56_RS17110	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_RS17115	COG4215	(ABC) transporter
NJ56_RS17120	COG4160	amino acid transport
NJ56_RS17125	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_RS17140	COG1177	transmembrane transport
NJ56_RS17145	COG1176	ABC-type spermidine putrescine transport system, permease component I
NJ56_RS17150	COG3842	ATPase activity
NJ56_RS17155	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NJ56_RS17175	COG2985	domain, Protein
NJ56_RS17175	COG0569	domain protein
NJ56_RS17185	COG0671	phosphoesterase, PA-phosphatase related
NJ56_RS17195	COG1349	DNA-binding transcription factor activity
NJ56_RS17200	COG0814	amino acid
NJ56_RS17205	COG1760	l-serine dehydratase
NJ56_RS17210	COG1686	Belongs to the peptidase S11 family
NJ56_RS17220	COG0626	cystathionine gamma-synthase activity
NJ56_RS17235	COG0625	glutathione transferase activity
NJ56_RS17240	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NJ56_RS17250	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NJ56_RS17255	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NJ56_RS17260	COG0131	Imidazoleglycerol-phosphate dehydratase
NJ56_RS17260	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NJ56_RS17270	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
NJ56_RS17280	COG0140	phosphoribosyl-ATP diphosphatase activity
NJ56_RS17280	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NJ56_RS17285	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
NJ56_RS17290	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NJ56_RS17295	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NJ56_RS17300	COG1253	flavin adenine dinucleotide binding
NJ56_RS17305	COG3069	C4-dicarboxylate transmembrane transporter activity
NJ56_RS17310	COG2982	Protein involved in outer membrane biogenesis
NJ56_RS17315	COG0717	Belongs to the dCTP deaminase family
NJ56_RS17320	COG0572	uridine kinase
NJ56_RS17325	COG0489	protein tyrosine kinase activity
NJ56_RS17330	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJ56_RS17330	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NJ56_RS17340	COG1380	Effector of murein hydrolase LrgA
NJ56_RS17345	COG1346	cytolysis
NJ56_RS17355	COG0583	DNA-binding transcription factor activity
NJ56_RS17365	COG0281	malic enzyme
NJ56_RS17370	COG2949	membrane
NJ56_RS17395	COG2311	Membrane
NJ56_RS17400	COG0302	gtp cyclohydrolase
NJ56_RS17405	COG0477	Major facilitator Superfamily
NJ56_RS17410	COG0583	DNA-binding transcription factor activity
NJ56_RS17430	COG0303	'Molybdopterin
NJ56_RS17435	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NJ56_RS17440	COG0488	(ABC) transporter
NJ56_RS17445	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
NJ56_RS17455	COG2239	Acts as a magnesium transporter
NJ56_RS17460	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
NJ56_RS17480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NJ56_RS17485	COG0765	amino acid transport
NJ56_RS17490	COG1126	abc transporter atp-binding protein
NJ56_RS17495	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
NJ56_RS17500	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NJ56_RS17515	COG0697	spore germination
NJ56_RS17525	COG1982	Orn Lys Arg decarboxylase major
NJ56_RS17530	COG0531	amino acid
NJ56_RS17535	COG1174	glycine betaine transport
NJ56_RS17540	COG1125	glycine betaine transport
NJ56_RS17545	COG1174	glycine betaine transport
NJ56_RS17550	COG1732	Glycine betaine
NJ56_RS17555	COG2897	thiosulfate sulfurtransferase activity
NJ56_RS17560	COG4807	Protein conserved in bacteria
NJ56_RS17565	COG3639	organic phosphonate transmembrane transporter activity
NJ56_RS17575	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
NJ56_RS17585	COG2261	transglycosylase associated protein
NJ56_RS17630	COG3328	transposase activity
NJ56_RS18070	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NJ56_RS18075	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair