NJ56_RS00015 SM00364 Leucine-rich repeats, bacterial type NJ56_RS00015 SM00365 Leucine-rich repeat, SDS22-like subfamily NJ56_RS00015 SM00369 Leucine-rich repeats, typical (most populated) subfamily NJ56_RS00025 SM00487 DEAD-like helicases superfamily NJ56_RS00025 SM00490 helicase superfamily c-terminal domain NJ56_RS00040 SM00382 ATPases associated with a variety of cellular activities NJ56_RS00075 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_RS00085 SM00382 ATPases associated with a variety of cellular activities NJ56_RS00110 SM00487 DEAD-like helicases superfamily NJ56_RS00110 SM00490 helicase superfamily c-terminal domain NJ56_RS00115 SM00382 ATPases associated with a variety of cellular activities NJ56_RS00135 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_RS00135 SM00876 Biotin and Thiamin Synthesis associated domain NJ56_RS00155 SM00382 ATPases associated with a variety of cellular activities NJ56_RS00210 SM00855 Phosphoglycerate mutase family NJ56_RS00220 SM00421 helix_turn_helix, Lux Regulon NJ56_RS00220 SM00448 cheY-homologous receiver domain NJ56_RS00225 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS00225 SM00387 Histidine kinase-like ATPases NJ56_RS00225 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS00225 SM00448 cheY-homologous receiver domain NJ56_RS00330 SM00881 CoA binding domain NJ56_RS00345 SM00861 Transketolase, pyrimidine binding domain NJ56_RS00400 SM00797 Allophanate hydrolase subunit 2 NJ56_RS00405 SM00796 Allophanate hydrolase subunit 1 NJ56_RS00455 SM00387 Histidine kinase-like ATPases NJ56_RS00455 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS00460 SM00448 cheY-homologous receiver domain NJ56_RS00460 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS00490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_RS00505 SM01081 Putative carbohydrate binding domain NJ56_RS00590 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_RS00605 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_RS00605 SM01091 Transporter associated domain NJ56_RS00620 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS00635 SM00382 ATPases associated with a variety of cellular activities NJ56_RS00690 SM00936 Penicillin-binding protein 5, C-terminal domain NJ56_RS00705 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_RS00715 SM00267 diguanylate cyclase NJ56_RS00730 SM00357 Cold shock protein domain NJ56_RS00740 SM00421 helix_turn_helix, Lux Regulon NJ56_RS00770 SM00267 diguanylate cyclase NJ56_RS00770 SM00448 cheY-homologous receiver domain NJ56_RS00775 SM00073 Histidine Phosphotransfer domain NJ56_RS00775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_RS00775 SM00091 PAS domain NJ56_RS00775 SM00387 Histidine kinase-like ATPases NJ56_RS00775 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS00775 SM00448 cheY-homologous receiver domain NJ56_RS00775 SM01079 NJ56_RS00775 NJ56_RS00820 SM00331 Sigma factor PP2C-like phosphatases NJ56_RS00820 SM00448 cheY-homologous receiver domain NJ56_RS00860 SM01236 NJ56_RS00860 NJ56_RS00885 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NJ56_RS00990 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS00995 SM00840 NJ56_RS00995 NJ56_RS01010 SM01001 AIR carboxylase NJ56_RS01025 SM00382 ATPases associated with a variety of cellular activities NJ56_RS01035 SM00822 NJ56_RS01035 NJ56_RS01045 SM00244 prohibitin homologues NJ56_RS01055 SM00422 helix_turn_helix, mercury resistance NJ56_RS01175 SM00387 Histidine kinase-like ATPases NJ56_RS01180 SM00493 NJ56_RS01180 NJ56_RS01190 SM00382 ATPases associated with a variety of cellular activities NJ56_RS01195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS01195 SM00387 Histidine kinase-like ATPases NJ56_RS01195 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS01200 SM00448 cheY-homologous receiver domain NJ56_RS01200 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS01310 SM00938 Nitrogen regulatory protein P-II NJ56_RS01315 SM00382 ATPases associated with a variety of cellular activities NJ56_RS01320 SM00382 ATPases associated with a variety of cellular activities NJ56_RS01325 SM00344 helix_turn_helix ASNC type NJ56_RS01365 SM00411 bacterial (prokaryotic) histone like domain NJ56_RS01370 SM00382 ATPases associated with a variety of cellular activities NJ56_RS01370 SM00464 Found in ATP-dependent protease La (LON) NJ56_RS01375 SM00382 ATPases associated with a variety of cellular activities NJ56_RS01375 SM00994 ClpX C4-type zinc finger NJ56_RS01375 SM01086 C-terminal, D2-small domain, of ClpB protein NJ56_RS01470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS01470 SM00387 Histidine kinase-like ATPases NJ56_RS01470 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS01475 SM00448 cheY-homologous receiver domain NJ56_RS01480 SM00981 NJ56_RS01480 NJ56_RS01495 SM00861 Transketolase, pyrimidine binding domain NJ56_RS01540 SM01323 NJ56_RS01540 NJ56_RS01570 SM00642 Alpha-amylase domain NJ56_RS01590 SM00091 PAS domain NJ56_RS01590 SM00387 Histidine kinase-like ATPases NJ56_RS01590 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS01595 SM00448 cheY-homologous receiver domain NJ56_RS01595 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS01640 SM00346 helix_turn_helix isocitrate lyase regulation NJ56_RS01685 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase NJ56_RS01745 SM00900 NJ56_RS01745 NJ56_RS01785 SM00479 NJ56_RS01785 NJ56_RS01800 SM00849 Metallo-beta-lactamase superfamily NJ56_RS01805 SM00257 Lysin motif NJ56_RS01845 SM00382 ATPases associated with a variety of cellular activities NJ56_RS01845 SM01086 C-terminal, D2-small domain, of ClpB protein NJ56_RS01855 SM00363 S4 RNA-binding domain NJ56_RS01875 SM00830 Chorismate mutase type II NJ56_RS01880 SM00830 Chorismate mutase type II NJ56_RS01890 SM00448 cheY-homologous receiver domain NJ56_RS01890 SM00850 LytTr DNA-binding domain NJ56_RS01925 SM00382 ATPases associated with a variety of cellular activities NJ56_RS01925 SM00962 SRP54-type protein, GTPase domain NJ56_RS01925 SM00963 SRP54-type protein, helical bundle domain NJ56_RS01935 SM01091 Transporter associated domain NJ56_RS01985 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NJ56_RS01995 SM00382 ATPases associated with a variety of cellular activities NJ56_RS02030 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS02045 SM00382 ATPases associated with a variety of cellular activities NJ56_RS02100 SM00495 Chitin-binding domain type 3 NJ56_RS02110 SM00194 Protein tyrosine phosphatase, catalytic domain NJ56_RS02110 SM00404 Protein tyrosine phosphatase, catalytic domain motif NJ56_RS02185 SM00382 ATPases associated with a variety of cellular activities NJ56_RS02210 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS02265 SM00421 helix_turn_helix, Lux Regulon NJ56_RS02265 SM00448 cheY-homologous receiver domain NJ56_RS02270 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS02270 SM00387 Histidine kinase-like ATPases NJ56_RS02270 SM00448 cheY-homologous receiver domain NJ56_RS02280 SM00533 DNA-binding domain of DNA mismatch repair MUTS family NJ56_RS02280 SM00534 ATPase domain of DNA mismatch repair MUTS family NJ56_RS02290 SM00257 Lysin motif NJ56_RS02390 SM01192 NJ56_RS02390 NJ56_RS02390 SM01193 NJ56_RS02390 NJ56_RS02405 SM00954 Region found in RelA / SpoT proteins NJ56_RS02415 SM00073 Histidine Phosphotransfer domain NJ56_RS02415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS02415 SM00387 Histidine kinase-like ATPases NJ56_RS02415 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS02415 SM00448 cheY-homologous receiver domain NJ56_RS02420 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_RS02425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_RS02465 SM00487 DEAD-like helicases superfamily NJ56_RS02465 SM00490 helicase superfamily c-terminal domain NJ56_RS02465 SM00847 Helicase associated domain (HA2) Add an annotation NJ56_RS02530 SM00382 ATPases associated with a variety of cellular activities NJ56_RS02535 SM00947 Carbonic anhydrase NJ56_RS02600 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_RS02600 SM00895 NJ56_RS02600 NJ56_RS02620 SM00644 NJ56_RS02620 NJ56_RS02645 SM01240 NJ56_RS02645 NJ56_RS02670 SM00957 SecA DEAD-like domain NJ56_RS02670 SM00958 SecA preprotein cross-linking domain NJ56_RS02690 SM00864 Tubulin/FtsZ family, GTPase domain NJ56_RS02690 SM00865 Tubulin/FtsZ family, C-terminal domain NJ56_RS02695 SM00842 Cell division protein FtsA NJ56_RS02775 SM01321 NJ56_RS02775 NJ56_RS02780 SM00354 helix_turn _helix lactose operon repressor NJ56_RS02805 SM00917 LeuA allosteric (dimerisation) domain NJ56_RS02810 SM01329 NJ56_RS02810 NJ56_RS02850 SM00382 ATPases associated with a variety of cellular activities NJ56_RS02860 SM00486 DNA polymerase type-B family NJ56_RS02865 SM00487 DEAD-like helicases superfamily NJ56_RS02865 SM00490 helicase superfamily c-terminal domain NJ56_RS02875 SM00271 DnaJ molecular chaperone homology domain NJ56_RS02895 SM00650 Ribosomal RNA adenine dimethylases NJ56_RS02935 SM00851 MGS-like domain NJ56_RS02935 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NJ56_RS02940 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain NJ56_RS02970 SM00904 Riboflavin kinase NJ56_RS02995 SM00271 DnaJ molecular chaperone homology domain NJ56_RS03020 SM00852 Probable molybdopterin binding domain NJ56_RS03055 SM00448 cheY-homologous receiver domain NJ56_RS03055 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS03065 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS03065 SM00871 Bacterial transcription activator, effector binding domain NJ56_RS03070 SM00855 Phosphoglycerate mutase family NJ56_RS03090 SM00831 Cation transporter/ATPase, N-terminus NJ56_RS03105 SM00382 ATPases associated with a variety of cellular activities NJ56_RS03110 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS03115 SM00382 ATPases associated with a variety of cellular activities NJ56_RS03140 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain NJ56_RS03145 SM01133 NJ56_RS03145 NJ56_RS03170 SM00749 bacterial OsmY and nodulation domain NJ56_RS03215 SM00267 diguanylate cyclase NJ56_RS03220 SM00091 PAS domain NJ56_RS03230 SM01120 NJ56_RS03230 NJ56_RS03350 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_RS03350 SM01134 NJ56_RS03350 NJ56_RS03365 SM00869 Autotransporter beta-domain NJ56_RS03440 SM00506 Appr-1"-p processing enzyme NJ56_RS03495 SM00382 ATPases associated with a variety of cellular activities NJ56_RS03665 SM00382 ATPases associated with a variety of cellular activities NJ56_RS03670 SM00382 ATPases associated with a variety of cellular activities NJ56_RS03680 SM00072 Guanylate kinase homologues. NJ56_RS03690 SM00859 Semialdehyde dehydrogenase, NAD binding domain NJ56_RS03750 SM00487 DEAD-like helicases superfamily NJ56_RS03750 SM00490 helicase superfamily c-terminal domain NJ56_RS03760 SM00028 Tetratricopeptide repeats NJ56_RS03765 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_RS03765 SM00322 K homology RNA-binding domain NJ56_RS03770 SM01387 NJ56_RS03770 NJ56_RS03790 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_RS03790 SM00322 K homology RNA-binding domain NJ56_RS03825 SM00382 ATPases associated with a variety of cellular activities NJ56_RS03835 SM01103 NJ56_RS03835 NJ56_RS03850 SM00448 cheY-homologous receiver domain NJ56_RS03850 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS03855 SM00387 Histidine kinase-like ATPases NJ56_RS03855 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS03945 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_RS03945 SM01091 Transporter associated domain NJ56_RS04060 SM00967 RNA 2'-O ribose methyltransferase substrate binding NJ56_RS04065 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_RS04065 SM00357 Cold shock protein domain NJ56_RS04065 SM00955 NJ56_RS04065 NJ56_RS04075 SM00788 Adenylosuccinate synthetase NJ56_RS04085 SM00244 prohibitin homologues NJ56_RS04090 SM00244 prohibitin homologues NJ56_RS04110 SM00853 MutL C terminal dimerisation domain NJ56_RS04110 SM01340 NJ56_RS04110 NJ56_RS04115 SM00257 Lysin motif NJ56_RS04115 SM00646 NJ56_RS04115 NJ56_RS04150 SM00479 NJ56_RS04150 NJ56_RS04225 SM00421 helix_turn_helix, Lux Regulon NJ56_RS04235 SM00841 Elongation factor P, C-terminal NJ56_RS04235 SM01185 NJ56_RS04235 NJ56_RS04255 SM00883 Chaperonin 10 Kd subunit NJ56_RS04325 SM00450 Rhodanese Homology Domain NJ56_RS04360 SM00857 Resolvase, N terminal domain NJ56_RS04465 SM00382 ATPases associated with a variety of cellular activities NJ56_RS04580 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NJ56_RS04580 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NJ56_RS04580 SM00493 NJ56_RS04580 NJ56_RS04675 SM00798 AICARFT/IMPCHase bienzyme NJ56_RS04675 SM00851 MGS-like domain NJ56_RS04680 SM01209 NJ56_RS04680 NJ56_RS04680 SM01210 NJ56_RS04680 NJ56_RS04690 SM00411 bacterial (prokaryotic) histone like domain NJ56_RS04745 SM00876 Biotin and Thiamin Synthesis associated domain NJ56_RS04750 SM00663 RNA polymerase I subunit A N-terminus NJ56_RS04780 SM00649 Ribosomal protein L11/L12 NJ56_RS04785 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. NJ56_RS04785 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. NJ56_RS04895 SM01060 NJ56_RS04895 NJ56_RS04900 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. NJ56_RS04905 SM01004 Delta-aminolevulinic acid dehydratase NJ56_RS05000 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05050 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05055 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05105 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05110 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05110 SM00962 SRP54-type protein, GTPase domain NJ56_RS05110 SM00963 SRP54-type protein, helical bundle domain NJ56_RS05205 SM00341 Helicase and RNase D C-terminal NJ56_RS05205 SM00487 DEAD-like helicases superfamily NJ56_RS05205 SM00490 helicase superfamily c-terminal domain NJ56_RS05205 SM00956 NJ56_RS05205 NJ56_RS05280 SM01219 NJ56_RS05280 NJ56_RS05380 SM00984 UDP binding domain NJ56_RS05400 SM00357 Cold shock protein domain NJ56_RS05400 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05400 SM00959 Rho termination factor, N-terminal domain NJ56_RS05410 SM00487 DEAD-like helicases superfamily NJ56_RS05410 SM00490 helicase superfamily c-terminal domain NJ56_RS05440 SM00495 Chitin-binding domain type 3 NJ56_RS05440 SM01276 NJ56_RS05440 NJ56_RS05480 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05600 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05630 SM00859 Semialdehyde dehydrogenase, NAD binding domain NJ56_RS05690 SM00487 DEAD-like helicases superfamily NJ56_RS05690 SM00490 helicase superfamily c-terminal domain NJ56_RS05695 SM00354 helix_turn _helix lactose operon repressor NJ56_RS05710 SM00382 ATPases associated with a variety of cellular activities NJ56_RS05710 SM01086 C-terminal, D2-small domain, of ClpB protein NJ56_RS05795 SM00448 cheY-homologous receiver domain NJ56_RS05795 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS05800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS05800 SM00387 Histidine kinase-like ATPases NJ56_RS05800 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS05810 SM00971 Serine acetyltransferase, N-terminal NJ56_RS05830 SM00450 Rhodanese Homology Domain NJ56_RS05850 SM00829 Enoylreductase NJ56_RS05890 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain NJ56_RS05890 SM01232 NJ56_RS05890 NJ56_RS05955 SM00052 Putative diguanylate phosphodiesterase NJ56_RS05955 SM00091 PAS domain NJ56_RS05955 SM00267 diguanylate cyclase NJ56_RS05985 SM00532 Ligase N family NJ56_RS05990 SM00072 Guanylate kinase homologues. NJ56_RS05995 SM01409 NJ56_RS05995 NJ56_RS06000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_RS06000 SM00954 Region found in RelA / SpoT proteins NJ56_RS06010 SM00487 DEAD-like helicases superfamily NJ56_RS06010 SM00490 helicase superfamily c-terminal domain NJ56_RS06055 SM01230 NJ56_RS06055 NJ56_RS06065 SM00091 PAS domain NJ56_RS06065 SM00387 Histidine kinase-like ATPases NJ56_RS06065 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS06070 SM00382 ATPases associated with a variety of cellular activities NJ56_RS06070 SM00448 cheY-homologous receiver domain NJ56_RS06075 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_RS06095 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs NJ56_RS06095 SM00474 3'-5' exonuclease NJ56_RS06095 SM00475 5'-3' exonuclease NJ56_RS06095 SM00482 DNA polymerase A domain NJ56_RS06145 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_RS06145 SM00895 NJ56_RS06145 NJ56_RS06150 SM00354 helix_turn _helix lactose operon repressor NJ56_RS06170 SM00382 ATPases associated with a variety of cellular activities NJ56_RS06185 SM00382 ATPases associated with a variety of cellular activities NJ56_RS06190 SM00327 von Willebrand factor (vWF) type A domain NJ56_RS06205 SM00344 helix_turn_helix ASNC type NJ56_RS06220 SM01228 NJ56_RS06220 NJ56_RS06270 SM00382 ATPases associated with a variety of cellular activities NJ56_RS06305 SM00382 ATPases associated with a variety of cellular activities NJ56_RS06315 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS06335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_RS06335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS06370 SM01234 NJ56_RS06370 NJ56_RS06390 SM00382 ATPases associated with a variety of cellular activities NJ56_RS06390 SM00760 Bacterial dnaA protein helix-turn-helix domain NJ56_RS06395 SM00480 DNA polymerase III beta subunit NJ56_RS06405 SM00387 Histidine kinase-like ATPases NJ56_RS06405 SM00433 TopoisomeraseII NJ56_RS06505 SM00972 Spore Coat Protein U domain NJ56_RS06540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_RS06540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS06540 SM01358 NJ56_RS06540 NJ56_RS06555 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NJ56_RS06655 SM00421 helix_turn_helix, Lux Regulon NJ56_RS06655 SM00448 cheY-homologous receiver domain NJ56_RS06660 SM00387 Histidine kinase-like ATPases NJ56_RS06690 SM00382 ATPases associated with a variety of cellular activities NJ56_RS06695 SM00382 ATPases associated with a variety of cellular activities NJ56_RS06740 SM00028 Tetratricopeptide repeats NJ56_RS06745 SM00052 Putative diguanylate phosphodiesterase NJ56_RS06745 SM00267 diguanylate cyclase NJ56_RS06770 SM00052 Putative diguanylate phosphodiesterase NJ56_RS06820 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NJ56_RS06860 SM00354 helix_turn _helix lactose operon repressor NJ56_RS06895 SM00859 Semialdehyde dehydrogenase, NAD binding domain NJ56_RS06905 SM00642 Alpha-amylase domain NJ56_RS06910 SM00642 Alpha-amylase domain NJ56_RS06935 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_RS06935 SM01134 NJ56_RS06935 NJ56_RS06945 SM00450 Rhodanese Homology Domain NJ56_RS06950 SM00421 helix_turn_helix, Lux Regulon NJ56_RS06995 SM00899 NJ56_RS06995 NJ56_RS07000 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_RS07000 SM00732 Likely ribonuclease with RNase H fold. NJ56_RS07030 SM00448 cheY-homologous receiver domain NJ56_RS07030 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS07035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS07035 SM00387 Histidine kinase-like ATPases NJ56_RS07035 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS07050 SM00363 S4 RNA-binding domain NJ56_RS07095 SM00965 Secretin and TonB N terminus short domain NJ56_RS07175 SM00354 helix_turn _helix lactose operon repressor NJ56_RS07205 SM00100 Cyclic nucleotide-monophosphate binding domain NJ56_RS07205 SM00419 helix_turn_helix, cAMP Regulatory protein NJ56_RS07270 SM00382 ATPases associated with a variety of cellular activities NJ56_RS07335 SM00838 Elongation factor G C-terminus NJ56_RS07335 SM00889 Elongation factor G, domain IV NJ56_RS07360 SM01403 NJ56_RS07360 NJ56_RS07380 SM01382 NJ56_RS07380 NJ56_RS07380 SM01383 NJ56_RS07380 NJ56_RS07395 SM00322 K homology RNA-binding domain NJ56_RS07415 SM01374 NJ56_RS07415 NJ56_RS07420 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. NJ56_RS07485 SM00363 S4 RNA-binding domain NJ56_RS07485 SM01390 NJ56_RS07485 NJ56_RS07490 SM00662 RNA polymerases D NJ56_RS07500 SM00422 helix_turn_helix, mercury resistance NJ56_RS07620 SM00346 helix_turn_helix isocitrate lyase regulation NJ56_RS07625 SM01018 B12 binding domain NJ56_RS07725 SM00382 ATPases associated with a variety of cellular activities NJ56_RS07745 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins NJ56_RS07745 SM00634 Bacterial Ig-like domain (group 1) NJ56_RS07760 SM00912 haemagglutination activity domain NJ56_RS07805 SM00382 ATPases associated with a variety of cellular activities NJ56_RS07830 SM00563 Phosphate acyltransferases NJ56_RS07860 SM00829 Enoylreductase NJ56_RS07865 SM00382 ATPases associated with a variety of cellular activities NJ56_RS07870 SM01005 Alanine racemase, C-terminal domain NJ56_RS07925 SM00947 Carbonic anhydrase NJ56_RS07965 SM00878 Biotin carboxylase C-terminal domain NJ56_RS07990 SM00829 Enoylreductase NJ56_RS07995 SM00052 Putative diguanylate phosphodiesterase NJ56_RS07995 SM00267 diguanylate cyclase NJ56_RS08020 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_RS08105 SM00831 Cation transporter/ATPase, N-terminus NJ56_RS08110 SM00354 helix_turn _helix lactose operon repressor NJ56_RS08120 SM00642 Alpha-amylase domain NJ56_RS08165 SM00382 ATPases associated with a variety of cellular activities NJ56_RS08195 SM00382 ATPases associated with a variety of cellular activities NJ56_RS08230 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_RS08235 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_RS08290 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_RS08295 SM00073 Histidine Phosphotransfer domain NJ56_RS08295 SM00091 PAS domain NJ56_RS08295 SM00387 Histidine kinase-like ATPases NJ56_RS08295 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS08295 SM00448 cheY-homologous receiver domain NJ56_RS08315 SM00749 bacterial OsmY and nodulation domain NJ56_RS08395 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_RS08395 SM00895 NJ56_RS08395 NJ56_RS08415 SM00858 NJ56_RS08415 NJ56_RS08445 SM00869 Autotransporter beta-domain NJ56_RS08480 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS08485 SM00400 zinc finger NJ56_RS08515 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS08520 SM00400 zinc finger NJ56_RS08525 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS08530 SM00400 zinc finger NJ56_RS08565 SM00860 SMI1 / KNR4 family NJ56_RS08635 SM00400 zinc finger NJ56_RS08635 SM00493 NJ56_RS08635 NJ56_RS08635 SM00766 DNA primase DnaG DnaB-binding NJ56_RS08650 SM01207 NJ56_RS08650 NJ56_RS08655 SM00905 Dihydroneopterin aldolase NJ56_RS08665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_RS08670 SM00287 Bacterial SH3 domain homologues NJ56_RS08675 SM01118 NJ56_RS08675 NJ56_RS08745 SM00387 Histidine kinase-like ATPases NJ56_RS08745 SM00433 TopoisomeraseII NJ56_RS08765 SM00434 DNA Topoisomerase IV NJ56_RS08770 SM00563 Phosphate acyltransferases NJ56_RS08780 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_RS08795 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS08905 SM00923 MbtH-like protein NJ56_RS08910 SM00823 Phosphopantetheine attachment site NJ56_RS08910 SM00824 Thioesterase NJ56_RS08920 SM00382 ATPases associated with a variety of cellular activities NJ56_RS08995 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_RS09000 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_RS09000 SM01134 NJ56_RS09000 NJ56_RS09060 SM00478 endonuclease III NJ56_RS09060 SM00525 NJ56_RS09060 NJ56_RS09085 SM00729 Elongator protein 3, MiaB family, Radical SAM NJ56_RS09095 SM01152 NJ56_RS09095 NJ56_RS09130 SM00732 Likely ribonuclease with RNase H fold. NJ56_RS09155 SM00731 SprT homologues. NJ56_RS09160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NJ56_RS09190 SM00861 Transketolase, pyrimidine binding domain NJ56_RS09195 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJ56_RS09260 SM01011 Aminopeptidase P, N-terminal domain NJ56_RS09355 SM00382 ATPases associated with a variety of cellular activities NJ56_RS09385 SM00382 ATPases associated with a variety of cellular activities NJ56_RS09430 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS09445 SM00849 Metallo-beta-lactamase superfamily NJ56_RS09465 SM00354 helix_turn _helix lactose operon repressor NJ56_RS09475 SM00563 Phosphate acyltransferases NJ56_RS09495 SM00927 DNA mismatch repair enzyme MutH NJ56_RS09510 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_RS09575 SM00646 NJ56_RS09575 NJ56_RS09595 SM00925 MltA specific insert domain NJ56_RS09635 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs NJ56_RS09635 SM00475 5'-3' exonuclease NJ56_RS09680 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_RS09725 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_RS09735 SM00935 Outer membrane protein (OmpH-like) NJ56_RS09765 SM00481 DNA polymerase alpha chain like domain NJ56_RS09795 SM00977 TilS substrate C-terminal domain NJ56_RS09815 SM01322 NJ56_RS09815 NJ56_RS09855 SM00382 ATPases associated with a variety of cellular activities NJ56_RS09855 SM00930 NJ56_RS09855 NJ56_RS09890 SM00155 Phospholipase D. Active site motifs. NJ56_RS09895 SM00881 CoA binding domain NJ56_RS09900 SM01144 NJ56_RS09900 NJ56_RS09910 SM00967 RNA 2'-O ribose methyltransferase substrate binding NJ56_RS09930 SM00347 helix_turn_helix multiple antibiotic resistance protein NJ56_RS09955 SM00382 ATPases associated with a variety of cellular activities NJ56_RS10000 SM00357 Cold shock protein domain NJ56_RS10035 SM00382 ATPases associated with a variety of cellular activities NJ56_RS10205 SM00778 Zinc-binding domain of primase-helicase NJ56_RS10205 SM00885 D5 N terminal like NJ56_RS10300 SM00986 Uracil DNA glycosylase superfamily NJ56_RS10300 SM00987 UreE urease accessory protein, C-terminal domain NJ56_RS10315 SM00248 ankyrin repeats NJ56_RS10320 SM00487 DEAD-like helicases superfamily NJ56_RS10320 SM00490 helicase superfamily c-terminal domain NJ56_RS10365 SM00358 Double-stranded RNA binding motif NJ56_RS10365 SM00535 Ribonuclease III family NJ56_RS10420 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS10425 SM01211 NJ56_RS10425 NJ56_RS10440 SM00387 Histidine kinase-like ATPases NJ56_RS10440 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS10450 SM00382 ATPases associated with a variety of cellular activities NJ56_RS10450 SM00448 cheY-homologous receiver domain NJ56_RS10460 SM00938 Nitrogen regulatory protein P-II NJ56_RS10555 SM00271 DnaJ molecular chaperone homology domain NJ56_RS10585 SM01359 NJ56_RS10585 NJ56_RS10585 SM01360 NJ56_RS10585 NJ56_RS10600 SM00562 NJ56_RS10600 NJ56_RS10610 SM00028 Tetratricopeptide repeats NJ56_RS10615 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS10635 SM00564 beta-propeller repeat NJ56_RS10655 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_RS10655 SM01240 NJ56_RS10655 NJ56_RS10665 SM00247 Beta/gamma crystallins NJ56_RS10715 SM00046 Diacylglycerol kinase catalytic domain (presumed) NJ56_RS10730 SM00448 cheY-homologous receiver domain NJ56_RS10730 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS10735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS10735 SM00387 Histidine kinase-like ATPases NJ56_RS10735 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS10795 SM00924 MgtE intracellular N domain NJ56_RS10825 SM00382 ATPases associated with a variety of cellular activities NJ56_RS10895 SM01130 NJ56_RS10895 NJ56_RS10945 SM00830 Chorismate mutase type II NJ56_RS10965 SM00421 helix_turn_helix, Lux Regulon NJ56_RS10965 SM00448 cheY-homologous receiver domain NJ56_RS10985 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NJ56_RS11005 SM00919 Malic enzyme, NAD binding domain NJ56_RS11005 SM01274 NJ56_RS11005 NJ56_RS11090 SM01130 NJ56_RS11090 NJ56_RS11135 SM00382 ATPases associated with a variety of cellular activities NJ56_RS11170 SM00771 ZipA, C-terminal domain (FtsZ-binding) NJ56_RS11175 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NJ56_RS11175 SM00292 breast cancer carboxy-terminal domain NJ56_RS11175 SM00532 Ligase N family NJ56_RS11280 SM00448 cheY-homologous receiver domain NJ56_RS11280 SM00850 LytTr DNA-binding domain NJ56_RS11285 SM00387 Histidine kinase-like ATPases NJ56_RS11335 SM00382 ATPases associated with a variety of cellular activities NJ56_RS11415 SM00463 Small MutS-related domain NJ56_RS11455 SM00825 Beta-ketoacyl synthase NJ56_RS11490 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_RS11505 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS11515 SM00859 Semialdehyde dehydrogenase, NAD binding domain NJ56_RS11560 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS11575 SM00382 ATPases associated with a variety of cellular activities NJ56_RS11590 SM00052 Putative diguanylate phosphodiesterase NJ56_RS11620 SM00354 helix_turn _helix lactose operon repressor NJ56_RS11655 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_RS11695 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NJ56_RS11700 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NJ56_RS11700 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NJ56_RS11770 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NJ56_RS11780 SM01060 NJ56_RS11780 NJ56_RS11810 SM00852 Probable molybdopterin binding domain NJ56_RS11845 SM00434 DNA Topoisomerase IV NJ56_RS11850 SM00387 Histidine kinase-like ATPases NJ56_RS11850 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS11850 SM00448 cheY-homologous receiver domain NJ56_RS11855 SM00421 helix_turn_helix, Lux Regulon NJ56_RS11855 SM00448 cheY-homologous receiver domain NJ56_RS11860 SM00387 Histidine kinase-like ATPases NJ56_RS11860 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS11960 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS12005 SM01252 NJ56_RS12005 NJ56_RS12010 SM00507 HNH nucleases NJ56_RS12060 SM00507 HNH nucleases NJ56_RS12215 SM00487 DEAD-like helicases superfamily NJ56_RS12215 SM00490 helicase superfamily c-terminal domain NJ56_RS12220 SM00363 S4 RNA-binding domain NJ56_RS12235 SM00382 ATPases associated with a variety of cellular activities NJ56_RS12255 SM00052 Putative diguanylate phosphodiesterase NJ56_RS12265 SM00014 Acid phosphatase homologues NJ56_RS12270 SM00833 Cobalamin synthesis protein cobW C-terminal domain NJ56_RS12300 SM00841 Elongation factor P, C-terminal NJ56_RS12300 SM01185 NJ56_RS12300 NJ56_RS12345 SM00518 AP endonuclease family 2 NJ56_RS12385 SM00382 ATPases associated with a variety of cellular activities NJ56_RS12405 SM00479 NJ56_RS12405 NJ56_RS12575 SM00974 NJ56_RS12575 NJ56_RS12585 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS12590 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS12605 SM00100 Cyclic nucleotide-monophosphate binding domain NJ56_RS12605 SM00419 helix_turn_helix, cAMP Regulatory protein NJ56_RS12610 SM00382 ATPases associated with a variety of cellular activities NJ56_RS12630 SM00387 Histidine kinase-like ATPases NJ56_RS12635 SM00421 helix_turn_helix, Lux Regulon NJ56_RS12635 SM00448 cheY-homologous receiver domain NJ56_RS12640 SM00448 cheY-homologous receiver domain NJ56_RS12645 SM00091 PAS domain NJ56_RS12645 SM00387 Histidine kinase-like ATPases NJ56_RS12650 SM00764 Citrate lyase ligase C-terminal domain NJ56_RS12725 SM00829 Enoylreductase NJ56_RS12730 SM01038 Beta galactosidase small chain NJ56_RS12735 SM00354 helix_turn _helix lactose operon repressor NJ56_RS12745 SM00357 Cold shock protein domain NJ56_RS12755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_RS12755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS12800 SM00073 Histidine Phosphotransfer domain NJ56_RS12800 SM00260 Two component signalling adaptor domain NJ56_RS12800 SM00387 Histidine kinase-like ATPases NJ56_RS12800 SM01231 NJ56_RS12800 NJ56_RS12805 SM00260 Two component signalling adaptor domain NJ56_RS12810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_RS12810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS12810 SM00319 Homologues of the ligand binding domain of Tar NJ56_RS12815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_RS12815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS12815 SM00319 Homologues of the ligand binding domain of Tar NJ56_RS12820 SM00138 Methyltransferase, chemotaxis proteins NJ56_RS12825 SM00448 cheY-homologous receiver domain NJ56_RS12830 SM00448 cheY-homologous receiver domain NJ56_RS12845 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS12850 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS12900 SM00421 helix_turn_helix, Lux Regulon NJ56_RS12935 SM00858 NJ56_RS12935 NJ56_RS12980 SM00047 Lysozyme subfamily 2 NJ56_RS13045 SM00382 ATPases associated with a variety of cellular activities NJ56_RS13075 SM00477 DNA/RNA non-specific endonuclease NJ56_RS13075 SM00892 DNA/RNA non-specific endonuclease NJ56_RS13085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NJ56_RS13090 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS13140 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS13140 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NJ56_RS13150 SM00382 ATPases associated with a variety of cellular activities NJ56_RS13165 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS13205 SM00421 helix_turn_helix, Lux Regulon NJ56_RS13205 SM00448 cheY-homologous receiver domain NJ56_RS13210 SM00465 GIY-YIG type nucleases (URI domain) NJ56_RS13525 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS13530 SM00974 NJ56_RS13530 NJ56_RS13550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_RS13550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS13560 SM00382 ATPases associated with a variety of cellular activities NJ56_RS13680 SM00363 S4 RNA-binding domain NJ56_RS13710 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS13740 SM00357 Cold shock protein domain NJ56_RS13745 SM00357 Cold shock protein domain NJ56_RS13750 SM00357 Cold shock protein domain NJ56_RS13790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_RS13790 SM00091 PAS domain NJ56_RS13790 SM00267 diguanylate cyclase NJ56_RS13795 SM00090 RIO-like kinase NJ56_RS13800 SM00382 ATPases associated with a variety of cellular activities NJ56_RS13810 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS13860 SM00357 Cold shock protein domain NJ56_RS13890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NJ56_RS13890 SM00450 Rhodanese Homology Domain NJ56_RS13960 SM01091 Transporter associated domain NJ56_RS13990 SM00487 DEAD-like helicases superfamily NJ56_RS13990 SM00490 helicase superfamily c-terminal domain NJ56_RS14000 SM01022 NJ56_RS14000 NJ56_RS14020 SM00479 NJ56_RS14020 NJ56_RS14105 SM01022 NJ56_RS14105 NJ56_RS14115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_RS14115 SM00091 PAS domain NJ56_RS14115 SM00267 diguanylate cyclase NJ56_RS14130 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_RS14135 SM00945 ProQ/FINO family NJ56_RS14140 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NJ56_RS14140 SM00245 tail specific protease NJ56_RS14160 SM00346 helix_turn_helix isocitrate lyase regulation NJ56_RS14165 SM00644 NJ56_RS14165 NJ56_RS14205 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14255 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NJ56_RS14280 SM00873 B3/4 domain NJ56_RS14280 SM00874 tRNA synthetase B5 domain NJ56_RS14280 SM00896 Ferredoxin-fold anticodon binding domain NJ56_RS14285 SM00411 bacterial (prokaryotic) histone like domain NJ56_RS14335 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14390 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14465 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14540 SM00354 helix_turn _helix lactose operon repressor NJ56_RS14565 SM00479 NJ56_RS14565 NJ56_RS14605 SM00347 helix_turn_helix multiple antibiotic resistance protein NJ56_RS14625 SM00363 S4 RNA-binding domain NJ56_RS14660 SM00271 DnaJ molecular chaperone homology domain NJ56_RS14680 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14685 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14720 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14755 SM00953 NJ56_RS14755 NJ56_RS14765 SM00091 PAS domain NJ56_RS14765 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14775 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NJ56_RS14800 SM00890 Domain of unknown function NJ56_RS14835 SM00871 Bacterial transcription activator, effector binding domain NJ56_RS14860 SM00382 ATPases associated with a variety of cellular activities NJ56_RS14860 SM00487 DEAD-like helicases superfamily NJ56_RS14860 SM00490 helicase superfamily c-terminal domain NJ56_RS14860 SM00847 Helicase associated domain (HA2) Add an annotation NJ56_RS14865 SM00020 Trypsin-like serine protease NJ56_RS14880 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS14895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS14895 SM00387 Histidine kinase-like ATPases NJ56_RS14895 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS14900 SM00448 cheY-homologous receiver domain NJ56_RS14900 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS14920 SM01002 Alanine dehydrogenase/PNT, C-terminal domain NJ56_RS14920 SM01003 Alanine dehydrogenase/PNT, N-terminal domain NJ56_RS14935 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family NJ56_RS14940 SM01007 Class II Aldolase and Adducin N-terminal domain NJ56_RS14955 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_RS14955 SM01134 NJ56_RS14955 NJ56_RS14970 SM00100 Cyclic nucleotide-monophosphate binding domain NJ56_RS14970 SM00419 helix_turn_helix, cAMP Regulatory protein NJ56_RS14980 SM00871 Bacterial transcription activator, effector binding domain NJ56_RS15055 SM00644 NJ56_RS15055 NJ56_RS15160 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS15170 SM00900 NJ56_RS15170 NJ56_RS15180 SM00478 endonuclease III NJ56_RS15180 SM00525 NJ56_RS15180 NJ56_RS15185 SM00357 Cold shock protein domain NJ56_RS15185 SM00955 NJ56_RS15185 NJ56_RS15190 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_RS15190 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_RS15190 SM00091 PAS domain NJ56_RS15190 SM00267 diguanylate cyclase NJ56_RS15210 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family NJ56_RS15225 SM00028 Tetratricopeptide repeats NJ56_RS15235 SM00014 Acid phosphatase homologues NJ56_RS15265 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NJ56_RS15265 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NJ56_RS15265 SM00493 NJ56_RS15265 NJ56_RS15285 SM00822 NJ56_RS15285 NJ56_RS15295 SM00363 S4 RNA-binding domain NJ56_RS15305 SM00481 DNA polymerase alpha chain like domain NJ56_RS15340 SM00749 bacterial OsmY and nodulation domain NJ56_RS15380 SM00421 helix_turn_helix, Lux Regulon NJ56_RS15410 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS15445 SM00155 Phospholipase D. Active site motifs. NJ56_RS15455 SM00382 ATPases associated with a variety of cellular activities NJ56_RS15460 SM00382 ATPases associated with a variety of cellular activities NJ56_RS15510 SM00528 Domain in histone-like proteins of HNS family NJ56_RS15515 SM00984 UDP binding domain NJ56_RS15520 SM00448 cheY-homologous receiver domain NJ56_RS15580 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NJ56_RS15580 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NJ56_RS15580 SM00493 NJ56_RS15580 NJ56_RS15600 SM00870 NJ56_RS15600 NJ56_RS15620 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NJ56_RS15650 SM00763 PrkA AAA domain NJ56_RS15675 SM00052 Putative diguanylate phosphodiesterase NJ56_RS15675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_RS15675 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NJ56_RS15675 SM00091 PAS domain NJ56_RS15675 SM00267 diguanylate cyclase NJ56_RS15690 SM01005 Alanine racemase, C-terminal domain NJ56_RS15705 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_RS15760 SM00341 Helicase and RNase D C-terminal NJ56_RS15760 SM00474 3'-5' exonuclease NJ56_RS15780 SM00491 NJ56_RS15780 NJ56_RS15825 SM00257 Lysin motif NJ56_RS15835 SM00382 ATPases associated with a variety of cellular activities NJ56_RS15850 SM00382 ATPases associated with a variety of cellular activities NJ56_RS15855 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NJ56_RS15880 SM00834 Putative regulatory protein NJ56_RS15915 SM00836 DALR anticodon binding domain NJ56_RS15915 SM01016 Arginyl tRNA synthetase N terminal dom NJ56_RS15925 SM00912 haemagglutination activity domain NJ56_RS15975 SM00481 DNA polymerase alpha chain like domain NJ56_RS16005 SM00267 diguanylate cyclase NJ56_RS16035 SM00937 NJ56_RS16035 NJ56_RS16055 SM01400 NJ56_RS16055 NJ56_RS16085 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NJ56_RS16085 SM00382 ATPases associated with a variety of cellular activities NJ56_RS16165 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NJ56_RS16200 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_RS16200 SM00866 NJ56_RS16200 NJ56_RS16245 SM00345 helix_turn_helix gluconate operon transcriptional repressor NJ56_RS16265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NJ56_RS16265 SM00387 Histidine kinase-like ATPases NJ56_RS16285 SM00342 helix_turn_helix, arabinose operon control protein NJ56_RS16310 SM00382 ATPases associated with a variety of cellular activities NJ56_RS16320 SM00235 Zinc-dependent metalloprotease NJ56_RS16330 SM00387 Histidine kinase-like ATPases NJ56_RS16335 SM00448 cheY-homologous receiver domain NJ56_RS16345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NJ56_RS16365 SM00421 helix_turn_helix, Lux Regulon NJ56_RS16370 SM01329 NJ56_RS16370 NJ56_RS16405 SM00448 cheY-homologous receiver domain NJ56_RS16405 SM00862 Transcriptional regulatory protein, C terminal NJ56_RS16410 SM00387 Histidine kinase-like ATPases NJ56_RS16410 SM00388 His Kinase A (phosphoacceptor) domain NJ56_RS16415 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. NJ56_RS16440 SM00382 ATPases associated with a variety of cellular activities NJ56_RS16455 SM00487 DEAD-like helicases superfamily NJ56_RS16455 SM00490 helicase superfamily c-terminal domain NJ56_RS16455 SM00982 NJ56_RS16455 NJ56_RS16455 SM01058 CarD-like/TRCF domain NJ56_RS16530 SM00825 Beta-ketoacyl synthase NJ56_RS16540 SM00822 NJ56_RS16540 NJ56_RS16545 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. NJ56_RS16575 SM00363 S4 RNA-binding domain NJ56_RS16585 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_RS16620 SM00421 helix_turn_helix, Lux Regulon NJ56_RS16630 SM00450 Rhodanese Homology Domain NJ56_RS16675 SM01091 Transporter associated domain NJ56_RS16680 SM00947 Carbonic anhydrase NJ56_RS16700 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase NJ56_RS16705 SM00992 Hemimethylated DNA-binding protein YccV like NJ56_RS16710 SM00881 CoA binding domain NJ56_RS16720 SM00851 MGS-like domain NJ56_RS16790 SM00382 ATPases associated with a variety of cellular activities NJ56_RS16795 SM00981 NJ56_RS16795 NJ56_RS16840 SM00849 Metallo-beta-lactamase superfamily NJ56_RS16895 SM00357 Cold shock protein domain NJ56_RS16900 SM00357 Cold shock protein domain NJ56_RS16905 SM01150 NJ56_RS16905 NJ56_RS16915 SM00382 ATPases associated with a variety of cellular activities NJ56_RS16920 SM00849 Metallo-beta-lactamase superfamily NJ56_RS16925 SM00411 bacterial (prokaryotic) histone like domain NJ56_RS16930 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_RS16950 SM00870 NJ56_RS16950 NJ56_RS16985 SM00382 ATPases associated with a variety of cellular activities NJ56_RS16995 SM00843 NJ56_RS16995 NJ56_RS17000 SM00344 helix_turn_helix ASNC type NJ56_RS17010 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17015 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17025 SM00316 Ribosomal protein S1-like RNA-binding domain NJ56_RS17030 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17030 SM01086 C-terminal, D2-small domain, of ClpB protein NJ56_RS17040 SM00357 Cold shock protein domain NJ56_RS17045 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17105 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17110 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS17110 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NJ56_RS17125 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS17125 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NJ56_RS17150 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17185 SM00014 Acid phosphatase homologues NJ56_RS17190 SM01133 NJ56_RS17190 NJ56_RS17195 SM00420 helix_turn_helix, Deoxyribose operon repressor NJ56_RS17195 SM01134 NJ56_RS17195 NJ56_RS17210 SM00936 Penicillin-binding protein 5, C-terminal domain NJ56_RS17215 SM00116 Domain in cystathionine beta-synthase and other proteins. NJ56_RS17285 SM01350 NJ56_RS17285 NJ56_RS17300 SM01091 Transporter associated domain NJ56_RS17365 SM00919 Malic enzyme, NAD binding domain NJ56_RS17365 SM01274 NJ56_RS17365 NJ56_RS17380 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17390 SM00354 helix_turn _helix lactose operon repressor NJ56_RS17415 SM00829 Enoylreductase NJ56_RS17430 SM00852 Probable molybdopterin binding domain NJ56_RS17440 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17480 SM00062 Bacterial periplasmic substrate-binding proteins NJ56_RS17480 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NJ56_RS17490 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17505 SM00487 DEAD-like helicases superfamily NJ56_RS17505 SM00491 NJ56_RS17505 NJ56_RS17540 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17555 SM00450 Rhodanese Homology Domain NJ56_RS17580 SM00382 ATPases associated with a variety of cellular activities NJ56_RS17595 SM00507 HNH nucleases NJ56_RS17600 SM01118 NJ56_RS17600 NJ56_RS17665 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS17900 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS18030 SM00857 Resolvase, N terminal domain NJ56_RS18055 SM00470 ParB-like nuclease domain NJ56_RS18080 SM00470 ParB-like nuclease domain NJ56_RS18125 SM00530 Helix-turn-helix XRE-family like proteins NJ56_RS18145 SM00421 helix_turn_helix, Lux Regulon NJ56_RS18280 SM00901 NJ56_RS18280