locus strain_id interpro function go others NJ56_RS00005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006094|IPR015409|IPR016164|IPR016167|IPR016169|IPR016172 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|D-lactate dehydrogenase, C-terminal subdomain 1|D-lactate dehydrogenase, membrane binding, C-terminal|FAD linked oxidase, N-terminal|FAD-binding, type 2, subdomain 1|FAD-linked oxidase-like, C-terminal GO:0003824|GO:0006089|GO:0016491|GO:0050660|GO:0055085|GO:0055114 G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.30.70.610|PF01565|PF09330|SSF55103 NJ56_RS00010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001967|IPR012338|IPR018044 Beta-lactamase/transpeptidase-like|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 G3DSA:3.40.710.10|PF00768|PR00725|SSF56601 NJ56_RS00015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001611|IPR003591|IPR025875|IPR032675 Leucine rich repeat 4|Leucine-rich repeat|Leucine-rich repeat domain, L domain-like|Leucine-rich repeat, typical subtype GO:0005515 G3DSA:3.80.10.10|PF00560|PF12799|PF13855|SM00364|SM00365|SM00369|SSF52058 NJ56_RS00020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001269|IPR013785|IPR018517|IPR032886 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine(16) synthase GO:0002943|GO:0003824|GO:0008033|GO:0017150|GO:0050660|GO:0055114 G3DSA:3.20.20.70|MF_02043|PF01207|PIRSF006621|PS01136|SSF51395 NJ56_RS00025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000629|IPR001650|IPR011545|IPR014001|IPR027417|IPR028622 ATP-dependent RNA helicase DEAD-box, conserved site|ATP-dependent RNA helicase RhlE|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0004004|GO:0005524|GO:0042255 G3DSA:3.40.50.300|MF_00968|PF00270|PF00271|PS00039|SM00487|SM00490|SSF52540 NJ56_RS00030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001647|IPR009057|IPR011075|IPR015292|IPR023772 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox domain-like|Tetracycline transcriptional regulator, TetR-related, C-terminal|Transcription regulator YbiH, C-terminal GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PF09209|PR00455|PS01081|SSF46689|SSF48498 NJ56_RS00035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain G3DSA:1.10.287.470|G3DSA:1.20.1600.10|G3DSA:2.40.50.100|PF16576|SSF111369 NJ56_RS00040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS00045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:3.40.1710.10|PF12698 NJ56_RS00050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000412 ABC-2 transporter GO:0006810|GO:0016020 G3DSA:3.40.1710.10|PF12698|PR00164 NJ56_RS00055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006214 Bax inhibitor 1-related PF01027 NJ56_RS00060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 G3DSA:3.90.1170.40|PF02391|SSF54690 NJ56_RS00065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003749|IPR010034|IPR012675|IPR016155 Beta-grasp domain|Molybdopterin converting factor, subunit 1|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|ThiamineS/Molybdopterin converting factor subunit 1 GO:0006777 G3DSA:3.10.20.30|PF02597|SSF54285|TIGR01682 NJ56_RS00070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002820|IPR023045 Molybdenum cofactor biosynthesis C|Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 G3DSA:3.30.70.640|MF_01224_B|PF01967|SSF55040|TIGR00581 NJ56_RS00075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000385|IPR006638|IPR007197|IPR010505|IPR013483|IPR013785 Aldolase-type TIM barrel|Elongator protein 3/MiaB/NifB|MoaA/nifB/pqqE, iron-sulphur binding, conserved site|Molybdenum cofactor biosynthesis protein A|Molybdenum cofactor synthesis C-terminal|Radical SAM GO:0003824|GO:0006777|GO:0019008|GO:0046872|GO:0051536|GO:0051539 G3DSA:3.20.20.70|MF_01225_B|PF04055|PF06463|PF13353|PS01305|SM00729|SSF102114|TIGR02666 NJ56_RS00080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002882|IPR010119 Gluconeogenesis factor|LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 G3DSA:3.40.50.10680|MF_00973|PF01933|SSF142338|TIGR01826 NJ56_RS00085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS00090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000522|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD-like|ABC transporter, FecCD/TroCD-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 NJ56_RS00095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002491 ABC transporter periplasmic binding domain GO:0005488 G3DSA:3.40.50.1980|PF01497|SSF53807 NJ56_RS00100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000531|IPR012910 TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 NJ56_RS00105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003034|IPR018668 DNA-binding protein VF530-like|SAP domain GO:0003677 G3DSA:1.10.720.30|PF09905 NJ56_RS00110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001650|IPR001943|IPR004807|IPR006935|IPR014001|IPR024759|IPR027417 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|UVR domain|UvrABC system, subunit B|UvrB, YAD/RRR-motif-containing domain GO:0003677|GO:0005515|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432|GO:0016787 G3DSA:3.40.50.300|G3DSA:4.10.860.10|MF_00204|PF00271|PF02151|PF04851|PF12344|SM00487|SM00490|SSF46600|SSF52540|TIGR00631 NJ56_RS00115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 NJ56_RS00120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004472|IPR027417 Dethiobiotin synthase BioD|P-loop containing nucleoside triphosphate hydrolase GO:0000287|GO:0004141|GO:0005524|GO:0009102 G3DSA:3.40.50.300|MF_00336|PF13500|PIRSF006755|SSF52540|TIGR00347 NJ56_RS00125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011814|IPR013216|IPR029063 Malonyl-[acyl-carrier protein] O-methyltransferase BioC|Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008152|GO:0008168|GO:0009102|GO:0010340 G3DSA:3.40.50.150|MF_00835|PF08241|SSF53335|TIGR02072 NJ56_RS00130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001917|IPR004723|IPR004839|IPR015421|IPR015422|IPR015424|IPR022834 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type|8-amino-7-oxononanoate synthase, Proteobacteria|Aminotransferase, class I/classII|Aminotransferase, class-II, pyridoxal-phosphate binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0008152|GO:0008710|GO:0009058|GO:0009102|GO:0016740|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01693|PF00155|PS00599|SSF53383|TIGR00858 NJ56_RS00135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002684|IPR006638|IPR007197|IPR010722|IPR013785|IPR024177 Aldolase-type TIM barrel|Biotin and thiamin synthesis-associated domain|Biotin synthase|Biotin synthase/Biotin biosynthesis bifunctional protein BioAB|Elongator protein 3/MiaB/NifB|Radical SAM GO:0003824|GO:0004076|GO:0009102|GO:0051536 G3DSA:3.20.20.70|MF_01694|PF04055|PF06968|PIRSF001619|SM00729|SM00876|SSF102114|TIGR00433 NJ56_RS00140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005814|IPR005815|IPR015422|IPR015424 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA|Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0004015|GO:0008483|GO:0009102|GO:0030170 G3DSA:3.90.1150.10|MF_00834|PF00202|PIRSF000521|PS00600|SSF53383|TIGR00508 NJ56_RS00145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011045|IPR015943|IPR019405|IPR022528 6-phosphogluconolactonase, YbhE-type|Lactonase, 7-bladed beta propeller|Nitrous oxide reductase, N-terminal|WD40/YVTN repeat-like-containing domain GO:0005515|GO:0005975|GO:0006098|GO:0017057 G3DSA:2.130.10.10|MF_01605|PF10282|SSF50974 NJ56_RS00150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000150|IPR006379|IPR023214 Cof family|HAD-like domain|HAD-superfamily hydrolase, subfamily IIB GO:0016787 G3DSA:3.40.50.1000|PF08282|PR00119|PS01229|SSF56784|TIGR00099|TIGR01484 NJ56_RS00155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR004606|IPR005116|IPR008995|IPR011868|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate ABC transporter, ATP-binding protein|Molybdate/tungstate binding, C-terminal|Molybdenum-pterin binding|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 1 GO:0005524|GO:0006810|GO:0015098|GO:0015689|GO:0016020|GO:0016887|GO:0030151 G3DSA:2.40.50.100|G3DSA:3.40.50.300|PF00005|PF03459|PS00211|SM00382|SSF50331|SSF52540|TIGR00638|TIGR02142 NJ56_RS00160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR011867 ABC transporter type 1, transmembrane domain MetI-like|Molybdate ABC transporter, permease protein GO:0006810|GO:0015098|GO:0015689|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR02141 NJ56_RS00165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 G3DSA:3.40.190.10|PF13531|PIRSF004846|SSF53850|TIGR01256 NJ56_RS00170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 MF_01484|PF10766 NJ56_RS00175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR003725|IPR004606|IPR005116|IPR008995|IPR011991|IPR016462 Molybdate-dependent transcriptional regulator ModE|Molybdate/tungstate binding, C-terminal|Molybdenum-binding protein ModE, N-terminal|Molybdenum-pterin binding|Transcription regulator HTH, LysR|Transport-associated OB, type 1|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355|GO:0006810|GO:0015689|GO:0030151 G3DSA:1.10.10.10|G3DSA:2.40.50.100|PF00126|PF03459|PIRSF005763|SSF46785|SSF50331|TIGR00637|TIGR00638 NJ56_RS00180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003675 CAAX amino terminal protease GO:0016020 PF02517 NJ56_RS00185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005886|IPR016040 NAD(P)-binding domain|UDP-glucose 4-epimerase GO:0003978|GO:0006012 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|SSF51735|TIGR01179 NJ56_RS00190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001937|IPR005849|IPR005850|IPR011146|IPR019779 Galactose-1-phosphate uridyl transferase, C-terminal|Galactose-1-phosphate uridyl transferase, N-terminal|Galactose-1-phosphate uridyl transferase, class I|Galactose-1-phosphate uridyl transferase, class I His-active site|HIT-like domain GO:0003824|GO:0006012|GO:0008108|GO:0008270|GO:0033499 G3DSA:3.30.428.10|PF01087|PF02744|PIRSF000808|PS00117|SSF54197|TIGR00209 NJ56_RS00195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000705|IPR006203|IPR006204|IPR006206|IPR013750|IPR014721|IPR019539|IPR019741|IPR020568|IPR022963 GHMP kinase N-terminal domain|GHMP kinase, ATP-binding, conserved site|GHMP kinase, C-terminal domain|Galactokinase|Galactokinase galactose-binding domain|Galactokinase, bacterial|Galactokinase, conserved site|Mevalonate/galactokinase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0004335|GO:0005524|GO:0005534|GO:0005737|GO:0006012|GO:0008152|GO:0016301|GO:0016773|GO:0046835 G3DSA:3.30.230.10|G3DSA:3.30.70.890|MF_00246|PF00288|PF08544|PF10509|PIRSF000530|PR00473|PR00959|PS00106|PS00627|SSF54211|SSF55060|TIGR00131 NJ56_RS00200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008183|IPR011013|IPR013458|IPR014718|IPR015443 Aldose 1-/Glucose-6-phosphate 1-epimerase|Aldose 1-epimerase|Aldose 1-epimerase, bacterial|Galactose mutarotase-like domain|Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0004034|GO:0005975|GO:0006012|GO:0016853|GO:0019318|GO:0030246 G3DSA:2.70.98.10|PF01263|PIRSF005096|SSF74650|TIGR02636 NJ56_RS00205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011690 Phosphate-starvation-induced PsiF repeat PF07769 NJ56_RS00210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001345|IPR005952|IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1|Phosphoglycerate mutase 1|Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0004619|GO:0006096|GO:0008152|GO:0016868 G3DSA:3.40.50.1240|MF_01039|PF00300|PIRSF000709|PS00175|SM00855|SSF53254|TIGR01258 NJ56_RS00215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006218|IPR006219|IPR013785 Aldolase-type TIM barrel|DAHP synthetase I/KDSA|DHAP synthase, class 1 GO:0003824|GO:0003849|GO:0009058|GO:0009073 G3DSA:3.20.20.70|PF00793|PIRSF001361|SSF51569|TIGR00034 NJ56_RS00220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR001789|IPR011006|IPR011991|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 NJ56_RS00225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001638|IPR001789|IPR003594|IPR003661|IPR004358|IPR008207|IPR011006 CheY-like superfamily|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain|Solute-binding protein family 3/N-terminal domain of MltF GO:0000155|GO:0000160|GO:0004871|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.120.160|G3DSA:3.30.565.10|G3DSA:3.40.190.10|G3DSA:3.40.50.2300|PF00072|PF00497|PF00512|PF02518|PR00344|SM00062|SM00387|SM00388|SM00448|SSF47226|SSF47384|SSF52172|SSF53850|SSF55874 NJ56_RS00230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 PF04973|TIGR01528 NJ56_RS00235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003473|IPR023513 Quinolinate synthase A, type 1|Quinolinate synthetase A GO:0008987|GO:0009435|GO:0016765|GO:0051539 G3DSA:3.40.50.10800|MF_00567|PF02445|SSF142754|TIGR00550 NJ56_RS00270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR014162|IPR019734|IPR032519|IPR034706 Cell division coordinator CpoB|Cell division coordinator CpoB, C-terminal|Tetratricopeptide repeat|Tetratricopeptide-like helical domain|YbgF, trimerisation domain GO:0005515|GO:0051301|GO:0070206 G3DSA:1.20.5.730|G3DSA:1.25.40.10|MF_02066|PF13174|PF13432|PF16331|SSF48452|TIGR02795 NJ56_RS00275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006664|IPR006665|IPR006690|IPR014169 OmpA-like domain|Outer membrane protein, OmpA-like, conserved site|Outer membrane protein, bacterial|Peptidoglycan-associated lipoprotein GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PR01021|PS01068|SSF103088|TIGR02802 NJ56_RS00280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007195|IPR011042|IPR011659|IPR014167 Six-bladed beta-propeller, TolB-like|Tol-Pal system beta propeller repeat-containing protein, TolB|TolB, N-terminal|WD40-like Beta Propeller GO:0015031|GO:0017038|GO:0042597 G3DSA:2.120.10.30|G3DSA:2.130.10.150|G3DSA:3.40.50.10070|MF_00671|PF04052|PF07676|SSF52964|SSF69304|TIGR02800 NJ56_RS00285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 G3DSA:3.30.1150.10|PF06519|SSF74653|TIGR02794 NJ56_RS00290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003400|IPR014168 Biopolymer transport protein ExbD/TolR|Biopolymer transport, TolR GO:0005215|GO:0006810|GO:0015031|GO:0016020|GO:0016021 PF02472|TIGR02801 NJ56_RS00295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002898|IPR014163 MotA/TolQ/ExbB proton channel|Tol-Pal system, TolQ GO:0006810|GO:0008565|GO:0015031|GO:0016020|GO:0016021 PF01618|TIGR02796 NJ56_RS00300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006683|IPR006684|IPR008272|IPR014166|IPR029069 4-hydroxybenzoyl-CoA thioesterase, active site|Acyl-CoA thioester hydrolase YbgC/YbaW family|HotDog domain|Thioesterase domain|Tol-Pal system-associated acyl-CoA thioesterase GO:0016787|GO:0016790 G3DSA:3.10.129.10|PF03061|PIRSF003230|PS01328|SSF54637|TIGR00051|TIGR02799 NJ56_RS00305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011846 Cyd operon protein YbgE PF09600|TIGR02112 NJ56_RS00310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011724|IPR012994 Cyd operon protein YbgT|Membrane bound YbgT-like PF08173|TIGR02106 NJ56_RS00315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PF02322|PIRSF000267|TIGR00203 NJ56_RS00320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 PF01654|PIRSF006446 NJ56_RS00325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004843|IPR006146|IPR006179|IPR008334|IPR029052 5'-Nucleotidase, C-terminal|5'-Nucleotidase, conserved site|5'-Nucleotidase/apyrase|Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0000166|GO:0009166|GO:0016787|GO:0016788|GO:0046872 G3DSA:3.60.21.10|G3DSA:3.90.780.10|PF00149|PF02872|PR01607|PS00785|PS00786|SSF55816|SSF56300 NJ56_RS00330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003781|IPR005810|IPR005811|IPR016040|IPR016102|IPR017440|IPR033847 ATP-citrate lyase/succinyl-CoA ligase|ATP-citrate lyase/succinyl-CoA ligase, active site|ATP-citrate lyase/succinyl-CoA ligase, conserved site|CoA-binding|NAD(P)-binding domain|Succinyl-CoA ligase, alpha subunit|Succinyl-CoA synthetase-like GO:0003824|GO:0008152|GO:0048037 G3DSA:3.40.50.261|G3DSA:3.40.50.720|MF_01988|PF00549|PF02629|PIRSF001553|PR01798|PS00399|PS01216|SM00881|SSF51735|SSF52210|TIGR01019 NJ56_RS00335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005809|IPR005811|IPR013650|IPR013815|IPR016102|IPR017866 ATP-citrate lyase/succinyl-CoA ligase|ATP-grasp fold, subdomain 1|ATP-grasp fold, succinyl-CoA synthetase-type|Succinate--CoA synthetase, beta subunit|Succinyl-CoA synthetase, beta subunit, conserved site|Succinyl-CoA synthetase-like GO:0003824|GO:0005524|GO:0006099|GO:0008152 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|MF_00558|PF00549|PF08442|PIRSF001554|PS01217|SSF52210|SSF56059|TIGR01016 NJ56_RS00340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR006255|IPR011053 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Dihydrolipoamide succinyltransferase|E3-binding domain|Single hybrid motif GO:0004149|GO:0006099|GO:0008152|GO:0016746|GO:0045252 G3DSA:3.30.559.10|G3DSA:3.90.1170.30|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777|TIGR01347 NJ56_RS00345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001017|IPR005475|IPR011603|IPR029061|IPR031717|IPR032106 2-oxoglutarate dehydrogenase E1 component|2-oxoglutarate dehydrogenase E1 component, N-terminal domain|Dehydrogenase, E1 component|Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal|Thiamin diphosphate-binding fold|Transketolase-like, pyrimidine-binding domain GO:0004591|GO:0006099|GO:0008152|GO:0016624|GO:0030976|GO:0055114 G3DSA:1.10.287.1150|G3DSA:3.40.50.970|PF00676|PF02779|PF16078|PF16870|PIRSF000157|SM00861|SSF52518|TIGR00239 NJ56_RS00350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001041|IPR004489|IPR009051|IPR012675|IPR017900|IPR025192 2Fe-2S ferredoxin-type iron-sulfur binding domain|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Alpha-helical ferredoxin|Beta-grasp domain|Succinate dehydogenase/fumarate reductase N-terminal|Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0009055|GO:0016491|GO:0051536|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.10.20.30|PF13085|PF13534|PS00198|SSF46548|SSF54292|TIGR00384 NJ56_RS00355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003952|IPR003953|IPR011281|IPR014006|IPR015939|IPR023753|IPR027477 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|Fumarate reductase/succinate dehydrogenase, FAD-binding site|Succinate dehydrogenase, flavoprotein subunit|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain|Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0006099|GO:0016491|GO:0016627|GO:0022900|GO:0050660|GO:0055114 G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:4.10.80.40|PF00890|PF02910|PIRSF000171|PR00368|PS00504|SSF46977|SSF51905|SSF56425|TIGR01812|TIGR01816 NJ56_RS00360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014312|IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit|Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016020|GO:0016021|GO:0020037 G3DSA:1.20.1300.10|PIRSF000169|SSF81343|TIGR02968 NJ56_RS00365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000701|IPR014314|IPR018495|IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit|Succinate dehydrogenase, cytochrome b subunit, conserved site|Succinate dehydrogenase, cytochrome b556 subunit|Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0000104|GO:0006099|GO:0009055|GO:0016020|GO:0016627|GO:0045281 G3DSA:1.20.1300.10|PF01127|PIRSF000178|PS01000|PS01001|SSF81343|TIGR02970 NJ56_RS00370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002020|IPR010953|IPR016142|IPR016143|IPR019810|IPR024176 Citrate synthase|Citrate synthase active site|Citrate synthase, bacterial-type|Citrate synthase, type I|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain GO:0004108|GO:0005737|GO:0006099|GO:0046912 G3DSA:1.10.230.10|G3DSA:1.10.580.10|PF00285|PIRSF001369|PR00143|PS00480|SSF48256|TIGR01798 NJ56_RS00380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000816|IPR016125|IPR029762|IPR033694 Peptidase C15, pyroglutamyl peptidase I|Peptidase C15, pyroglutamyl peptidase I-like|Pyroglutamyl peptidase I, Cys active site|Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 G3DSA:3.40.630.20|MF_00417|PF01470|PIRSF015592|PR00706|PS01334|SSF53182|TIGR00504 NJ56_RS00385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009323 Protein of unknown function DUF979 PF06166 NJ56_RS00390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010374 Protein of unknown function DUF969 PF06149 NJ56_RS00395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005501|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|Uncharacterised protein family UPF0271, LamB/YcsF GO:0003824|GO:0005975 G3DSA:3.20.20.370|MF_00691|PF03746|SSF88713 NJ56_RS00400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003778|IPR029000 Carboxyltransferase domain, subdomain A and B|Cyclophilin-like domain PF02626|SM00797|SSF50891|TIGR00724 NJ56_RS00405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003833|IPR010016|IPR024946|IPR029000 Arginine repressor C-terminal-like domain|Carboxyltransferase domain, subdomain C and D|Cyclophilin-like domain|KipI family G3DSA:2.40.100.10|G3DSA:3.30.1360.40|PF02682|SM00796|SSF160467|SSF50891|TIGR00370 NJ56_RS00410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002678 GTP cyclohydrolase 1 type 2/Nif3 G3DSA:3.40.1390.30|PF01784|SSF102705|TIGR00486 NJ56_RS00415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000396|IPR001279|IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site|Cyclic-AMP phosphodiesterase, class-II|Metallo-beta-lactamase GO:0004115|GO:0006198|GO:0008081 G3DSA:3.60.15.10|PF02112|PIRSF000962|PR00388|PS00607|SSF56281 NJ56_RS00420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002081|IPR005101|IPR006050|IPR014729|IPR018394 Cryptochrome/DNA photolyase class 1|Cryptochrome/DNA photolyase class 1, conserved site, C-terminal|Cryptochrome/DNA photolyase, FAD-binding domain|DNA photolyase, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:1.10.579.10|G3DSA:1.25.40.80|G3DSA:3.40.50.620|PF00875|PF03441|PR00147|PS00394|PS00691|SSF48173|SSF52425 NJ56_RS00425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007553|IPR013560|IPR017087 Domain of unknown function DUF1722|Domain of unknown function DUF523|Uncharacterised conserved protein UCP037004 PF04463|PF08349|PIRSF037004 NJ56_RS00430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019663 Uncharacterised protein YbfA PF10725 NJ56_RS00435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 PF09604|TIGR02115 NJ56_RS00440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 G3DSA:1.10.287.70|MF_00275|PF03814|PIRSF001294|TIGR00680 NJ56_RS00445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001757|IPR006391|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299 HAD-like domain|P-type ATPase|P-type ATPase, transmembrane domain|P-type ATPase, A domain|P-type ATPase, B chain, subfamily IA|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site GO:0000166|GO:0005524|GO:0006813|GO:0008556|GO:0016021 G3DSA:1.20.1110.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|MF_00285|PF00122|PF00702|PR00119|PS00154|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01497 NJ56_RS00450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 MF_00276|PF02669|PIRSF001296|TIGR00681 NJ56_RS00455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003018|IPR003594|IPR003661|IPR003852|IPR004358|IPR014729|IPR025201|IPR029016 GAF domain|GAF domain-like|Histidine kinase-like ATPase, C-terminal domain|Rossmann-like alpha/beta/alpha sandwich fold|Sensor protein KdpD, transmembrane domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0005515|GO:0007165|GO:0016020|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.120.620|G3DSA:3.30.450.40|G3DSA:3.30.565.10|G3DSA:3.40.50.300|G3DSA:3.40.50.620|PF00512|PF02518|PF02702|PF13492|PF13493|PR00344|SM00387|SM00388|SSF47384|SSF52402|SSF55781|SSF55874 NJ56_RS00460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 NJ56_RS00465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS00470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005843|IPR005844|IPR005845|IPR005846|IPR005852|IPR016055|IPR016066 Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site|Phosphoglucomutase, alpha-D-glucose specific GO:0000287|GO:0004614|GO:0005975|GO:0016868|GO:0071704 G3DSA:3.30.310.50|G3DSA:3.40.120.10|PF00408|PF02878|PF02879|PF02880|PS00710|SSF53738|SSF55957|TIGR01132 NJ56_RS00475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005621|IPR010985|IPR013321|IPR026577|IPR033761 Arc-type ribbon-helix-helix|Negative modulator of initiation of replication SeqA|Negative modulator of initiation of replication SeqA, N-terminal|Replication modulator SeqA, C-terminal DNA-binding domain|Ribbon-helix-helix GO:0003677|GO:0006355|GO:0032297 G3DSA:1.10.1220.10|G3DSA:1.20.1380.10|MF_00908|PF03925|PF17206|PIRSF019401|SSF47598|SSF82808 NJ56_RS00480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000073|IPR000639|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like GO:0003824 G3DSA:3.40.50.1820|PF12697|PR00111|PR00412|SSF53474 NJ56_RS00485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002145|IPR013321 Arc-type ribbon-helix-helix|Ribbon-helix-helix protein, CopG GO:0006355 G3DSA:1.10.1220.10|PF01402 NJ56_RS00490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004089|IPR004090|IPR004091|IPR035440 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor, methyl-accepting site|Methyl-accepting chemotaxis protein (MCP) signalling domain|Methyl-accepting chemotaxis protein, four helix bundle domain GO:0004871|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|G3DSA:1.20.120.30|PF00015|PR00260|PS00538|SM00283|SSF58104 NJ56_RS00495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001226|IPR008254|IPR010086|IPR029039 Flavodoxin, conserved site|Flavodoxin, long chain|Flavodoxin/nitric oxide synthase|Flavoprotein-like domain GO:0009055|GO:0010181 G3DSA:3.40.50.360|PF00258|PIRSF038996|PS00201|SSF52218|TIGR01752 NJ56_RS00500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002481|IPR011991 Ferric-uptake regulator|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01475|SSF46785 NJ56_RS00505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004866|IPR004867|IPR008965|IPR013783|IPR014756|IPR015882|IPR015883|IPR017853|IPR025705|IPR029018 Beta-hexosaminidase|Beta-hexosaminidase, bacteial type, N-terminal|Carbohydrate-binding domain|Chitobiase C-terminal domain|Chitobiase/beta-hexosaminidase domain 2-like|Chitobiase/beta-hexosaminidases, N-terminal domain|Glycoside hydrolase family 20, catalytic domain|Glycoside hydrolase superfamily|Immunoglobulin E-set|Immunoglobulin-like fold GO:0004553|GO:0004563|GO:0005975|GO:0030246 G3DSA:2.60.40.10|G3DSA:2.60.40.290|G3DSA:3.20.20.80|G3DSA:3.30.379.10|PF00728|PF02838|PF03173|PF03174|PR00738|SM01081|SSF49384|SSF51445|SSF55545|SSF81296 NJ56_RS00510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025727 YbfN-like lipoprotein PF13982 NJ56_RS00515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 G3DSA:2.40.160.10|PF03573 NJ56_RS00520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000924|IPR001412|IPR004514|IPR011035|IPR014729|IPR020056|IPR020058|IPR020059|IPR020061|IPR022861 Aminoacyl-tRNA synthetase, class I, conserved site|Glutamine-tRNA ligase, bacterial|Glutamine-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain|Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain|Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0004819|GO:0005524|GO:0005737|GO:0006412|GO:0006418|GO:0006425|GO:0016876|GO:0043039 G3DSA:1.10.1160.10|G3DSA:2.40.240.10|G3DSA:3.40.50.620|MF_00126|PF00749|PF03950|PR00987|PS00178|SSF50715|SSF52374|TIGR00440 NJ56_RS00525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001127|IPR001996|IPR003352|IPR010974|IPR011055|IPR018113 Duplicated hybrid motif|Phosphotransferase system EIIB, cysteine phosphorylation site|Phosphotransferase system, EIIC|Phosphotransferase system, IIB component, type 1|Phosphotransferase system, N-acetylglucosamine-specific IIBC component|Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0008982|GO:0009401|GO:0015572|GO:0016020|GO:0016021|GO:0019866 G3DSA:2.70.70.10|G3DSA:3.30.1360.60|PF00358|PF00367|PF02378|PS00371|PS01035|SSF51261|SSF55604|TIGR00826|TIGR00830|TIGR01998 NJ56_RS00530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004547|IPR006148|IPR018321 Glucosamine-6-phosphate isomerase|Glucosamine-6-phosphate isomerase, conserved site|Glucosamine/galactosamine-6-phosphate isomerase GO:0004342|GO:0005975|GO:0006044 G3DSA:3.40.50.1360|MF_01241|PF01182|PS01161|SSF100950|TIGR00502 NJ56_RS00535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003764|IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain|N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448|GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|PIRSF038994|SSF51338|SSF51556|TIGR00221 NJ56_RS00540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000600|IPR000835|IPR011991 MarR-type HTH domain|ROK family|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.420.40|PF00480|PF01047|PS01125|SSF46785|SSF53067 NJ56_RS00545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006357|IPR023214 HAD-like domain|HAD-superfamily hydrolase, subfamily IIA G3DSA:3.40.50.1000|PF13242|PF13344|SSF56784|TIGR01460 NJ56_RS00550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001962|IPR006426|IPR014729|IPR017932|IPR029055 Asparagine synthase|Asparagine synthase, glutamine-hydrolyzing|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0004066|GO:0006529 G3DSA:3.40.50.620|G3DSA:3.60.20.10|PF00733|PF13537|PIRSF001589|SSF52402|SSF56235|TIGR01536 NJ56_RS00585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002938|IPR010971|IPR023753 FAD-binding domain|FAD/NAD(P)-binding domain|Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016491|GO:0016709|GO:0050660|GO:0055114|GO:0071949 G3DSA:3.50.50.60|PF01494|PR00420|SSF51905|TIGR01988 NJ56_RS00590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002792|IPR005839|IPR006463|IPR006638|IPR007197|IPR013848|IPR020612|IPR023404 Elongator protein 3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, conserved site|Radical SAM|Radical SAM, alpha/beta horseshoe|TRAM domain|tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0003824|GO:0005737|GO:0006400|GO:0016740|GO:0051536|GO:0051539 G3DSA:3.80.30.20|MF_01864|PF00919|PF01938|PF04055|PS01278|SM00729|SSF102114|TIGR00089|TIGR01574 NJ56_RS00595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003714|IPR027417 P-loop containing nucleoside triphosphate hydrolase|PhoH-like protein GO:0005524 G3DSA:3.40.50.300|PF02562|SSF52540 NJ56_RS00600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002036|IPR020549|IPR023091 Endoribonuclease YbeY|Endoribonuclease YbeY, conserved site|Metalloprotease catalytic domain, predicted GO:0004222|GO:0006364 G3DSA:3.40.390.30|MF_00009|PF02130|PS01306|SSF55486|TIGR00043 NJ56_RS00605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR005170|IPR016166|IPR016169 CBS domain|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD-binding, type 2|Transporter-associated domain GO:0003824|GO:0016614|GO:0050660|GO:0055114 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|SM00116|SM01091|SSF54631|SSF56176 NJ56_RS00610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003010|IPR004563 Apolipoprotein N-acyltransferase|Carbon-nitrogen hydrolase GO:0006807|GO:0016021|GO:0016410|GO:0016810|GO:0042158 G3DSA:3.60.110.10|MF_01148|PF00795|SSF56317|TIGR00546 NJ56_RS00620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 NJ56_RS00625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS00630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS00635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 NJ56_RS00640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009912 Zinc-ribbon containing domain G3DSA:1.10.238.10|PF07295 NJ56_RS00645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001412|IPR002300|IPR002302|IPR009008|IPR009080|IPR013155|IPR014729|IPR025709 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Leucine-tRNA ligase|Leucyl-tRNA synthetase, editing domain|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0000166|GO:0002161|GO:0004812|GO:0004823|GO:0005524|GO:0006418|GO:0006429 G3DSA:1.10.730.10|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_00049_B|PF00133|PF08264|PF13603|PR00985|PS00178|SSF47323|SSF50677|SSF52374|TIGR00396 NJ56_RS00650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 G3DSA:3.30.160.150|MF_01186|PF04390 NJ56_RS00655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005790|IPR008921|IPR010372|IPR027417|IPR032780 DNA polymerase III delta, N-terminal|DNA polymerase III subunit delta, C-terminal|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, delta subunit|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003887|GO:0006260|GO:0009360 G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF06144|PF14840|SSF48019|SSF52540|TIGR01128 NJ56_RS00660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004821|IPR005248|IPR014729 Cytidyltransferase-like domain|Nicotinate/nicotinamide nucleotide adenylyltransferase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0009058|GO:0009435|GO:0016779 G3DSA:3.40.50.620|MF_00244|PF01467|SSF52374|TIGR00125|TIGR00482 NJ56_RS00665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004394 Protein Iojap/ribosomal silencing factor RsfS G3DSA:3.30.460.10|MF_01477|PF02410|SSF81301|TIGR00090 NJ56_RS00670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003742|IPR029026|IPR029028 Alpha/beta knot methyltransferases|RNA methyltransferase RlmH|tRNA (guanine-N1-)-methyltransferase, N-terminal GO:0005737|GO:0006364|GO:0008168 G3DSA:3.40.1280.10|MF_00658|PF02590|PIRSF004505|SSF75217|TIGR00246 NJ56_RS00675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001460|IPR005311|IPR012338|IPR017790 Beta-lactamase/transpeptidase-like|Penicillin-binding protein 2|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, transpeptidase GO:0008658|GO:0016020 G3DSA:3.40.710.10|G3DSA:3.90.1310.10|PF00905|PF03717|SSF56519|SSF56601|TIGR03423 NJ56_RS00680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001182|IPR011923|IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site|Probable peptidoglycan glycosyltransferase FtsW/RodA|Rod shape-determining protein RodA GO:0007049|GO:0008360|GO:0016021|GO:0051301 PF01098|PS00428|TIGR02210 NJ56_RS00685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007730|IPR009009|IPR012997|IPR034718 Endolytic peptidoglycan transglycosylase RlpA|Rare lipoprotein A|RlpA-like protein, double-psi beta-barrel domain|Sporulation-related domain GO:0016829|GO:0042834 G3DSA:2.40.40.10|G3DSA:3.30.70.1070|MF_02071|PF03330|PF05036|SSF110997|SSF50685|TIGR00413 NJ56_RS00690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001967|IPR012338|IPR012907|IPR015956|IPR018044 Beta-lactamase/transpeptidase-like|Penicillin-binding protein-associated|Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0004180|GO:0006508|GO:0009002 G3DSA:2.60.410.10|G3DSA:3.40.710.10|PF00768|PF07943|PR00725|SM00936|SSF56601|SSF69189 NJ56_RS00695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007454|IPR027471 Uncharacterised protein family UPF0250|YbeD-like domain G3DSA:3.30.70.260|MF_00659|PF04359|SSF117991 NJ56_RS00700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000544|IPR004143|IPR020605 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain|Octanoyltransferase|Octanoyltransferase, conserved site GO:0005737|GO:0006464|GO:0009107|GO:0016415|GO:0033819 G3DSA:3.30.930.10|MF_00013|PD006086|PF03099|PIRSF016262|PS01313|SSF55681|TIGR00214 NJ56_RS00705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003698|IPR006638|IPR007197|IPR013785|IPR031691 Aldolase-type TIM barrel|Elongator protein 3/MiaB/NifB|Lipoyl synthase|Lipoyl synthase, N-terminal|Radical SAM GO:0003824|GO:0009107|GO:0016992|GO:0051536|GO:0051539 G3DSA:3.20.20.70|MF_00206|PF04055|PF16881|PIRSF005963|SM00729|SSF102114|TIGR00510 NJ56_RS00710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003369|IPR006312|IPR024905 Sec-independent protein translocase protein TatA/B/E|Sec-independent protein translocase protein TatA/E|Sec-independent protein translocase protein TatE GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 MF_00236|MF_00903|PF02416|TIGR01411 NJ56_RS00715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000160|IPR007894|IPR029787 GGDEF domain|MASE2|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|PF05230|SM00267|SSF55073|TIGR00254 NJ56_RS00720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF00583|SSF55729 NJ56_RS00725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003691 Putative fluoride ion transporter CrcB GO:0016021 MF_00454|PF02537|TIGR00494 NJ56_RS00730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 NJ56_RS00735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR012340 Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|SSF50249 NJ56_RS00740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR011991|IPR016032 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00196|PR00038|SM00421|SSF46894 NJ56_RS00750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014973|IPR022123 Protein of unknown function DUF1835|Protein of unknown function DUF3658 PF08874|PF12395 NJ56_RS00755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010854|IPR025543 Dodecin-like|Domain of unknown function DUF1471 G3DSA:3.30.1660.10|PF07338|SSF159871 NJ56_RS00760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007339|IPR016865 Inner membrane protein RclC|Protein of unknown function DUF417 PF04224|PIRSF028065 NJ56_RS00765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001647|IPR009057|IPR011075 DNA-binding HTH domain, TetR-type|Homeobox domain-like|Tetracycline transcriptional regulator, TetR-related, C-terminal GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 NJ56_RS00770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000160|IPR001789|IPR011006|IPR029787 CheY-like superfamily|GGDEF domain|Nucleotide cyclase|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.30.70.270|G3DSA:3.40.50.2300|PF00072|PF00990|SM00267|SM00448|SSF52172|SSF55073|TIGR00254 NJ56_RS00775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR001610|IPR001789|IPR003594|IPR003661|IPR004358|IPR006189|IPR008207|IPR011006|IPR013655 CHASE domain|CheY-like superfamily|Histidine kinase-like ATPase, C-terminal domain|PAC motif|PAS domain|PAS fold-3|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0004871|GO:0005515|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.120.160|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.10600|G3DSA:3.40.50.2300|PF00072|PF00512|PF01627|PF02518|PF03924|PF08447|PF13426|PR00344|SM00073|SM00086|SM00091|SM00387|SM00388|SM00448|SM01079|SSF47226|SSF47384|SSF52172|SSF55785|SSF55874|TIGR00229 NJ56_RS00780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006101|IPR006102|IPR006103|IPR006104|IPR008979|IPR013783|IPR017853 Galactose-binding domain-like|Glycoside hydrolase family 2, catalytic domain|Glycoside hydrolase superfamily|Glycoside hydrolase, family 2|Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich|Glycosyl hydrolases family 2, sugar binding domain|Immunoglobulin-like fold GO:0004553|GO:0005975 G3DSA:2.60.120.260|G3DSA:2.60.40.10|G3DSA:3.20.20.80|PF00703|PF02836|PF02837|PR00132|SSF49303|SSF49785|SSF51445 NJ56_RS00785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021478 Protein of unknown function DUF3131 PF11329 NJ56_RS00790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021478 Protein of unknown function DUF3131 PF11329 NJ56_RS00795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021478 Protein of unknown function DUF3131 PF11329 NJ56_RS00800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 NJ56_RS00805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594 Histidine kinase-like ATPase, C-terminal domain G3DSA:3.30.565.10|PF13581|SSF55874 NJ56_RS00810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001451|IPR005835|IPR011004|IPR029044 Hexapeptide repeat|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|Trimeric LpxA-like GO:0009058|GO:0016779 G3DSA:2.160.10.10|G3DSA:3.90.550.10|PF00132|PF00483|SSF51161|SSF53448 NJ56_RS00815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002645|IPR003658 Anti-sigma factor antagonist|STAS domain GO:0006355|GO:0045152 G3DSA:3.30.750.24|PF01740|SSF52091|TIGR00377 NJ56_RS00820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001932|IPR011006 CheY-like superfamily|PPM-type phosphatase domain|Signal transduction response regulator, receiver domain GO:0000160|GO:0003824 G3DSA:3.40.50.2300|G3DSA:3.60.40.10|PF00072|PF07228|SM00331|SM00448|SSF52172 NJ56_RS00830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000811|IPR011833|IPR035090 Glycogen/starch/alpha-glucan phosphorylase|Glycosyl transferase, family 35|Phosphorylase pyridoxal-phosphate attachment site GO:0004645|GO:0005975|GO:0008184|GO:0030170 G3DSA:3.40.50.2000|PF00343|PIRSF000460|PS00102|SSF53756|TIGR02093 NJ56_RS00835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014550 Uncharacterised conserved protein UCP028704, OpgC PF10129 NJ56_RS00840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 G3DSA:1.20.950.20|PF01292|SSF81342 NJ56_RS00845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008217 Ccc1 family PF01988 NJ56_RS00850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990 Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.40.10|SSF48452 NJ56_RS00855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR016040|IPR020904 NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 NJ56_RS00860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016084|IPR028201 Haem oxygenase-like, multi-helical|PqqC-like protein G3DSA:1.20.910.10|PF14518|SM01236|SSF48613 NJ56_RS00865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR020845 AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824|GO:0008152 G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PS00455|SSF56801 NJ56_RS00870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016181|IPR022050 Acyl-CoA N-acyltransferase|Thermostable hemolysin PF12261|SSF55729 NJ56_RS00875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006659|IPR006660|IPR012336 Arsenate reductase|Arsenate reductase-like|Thioredoxin-like fold GO:0008794|GO:0055114 G3DSA:3.40.30.10|PF03960|SSF52833|TIGR00014 NJ56_RS00880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PF02040|PR00758|TIGR00935 NJ56_RS00885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001845|IPR011991 HTH ArsR-type DNA-binding domain|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01022|PR00778|SM00418|SSF46785 NJ56_RS00900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS00905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 NJ56_RS00910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001584 Integrase, catalytic core GO:0015074 PF13683 NJ56_RS00920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001584|IPR012337|IPR025948 HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 NJ56_RS00925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 NJ56_RS00935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000672|IPR016040|IPR020630|IPR020631|IPR020867 NAD(P)-binding domain|Tetrahydrofolate dehydrogenase/cyclohydrolase|Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0004488|GO:0055114 G3DSA:3.40.50.10860|G3DSA:3.40.50.720|MF_01576|PF00763|PF02882|PR00085|PS00766|PS00767|SSF51735|SSF53223 NJ56_RS00940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002942 RNA-binding S4 domain GO:0003723 G3DSA:3.10.290.10|PF13275|SSF55174 NJ56_RS00945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007016|IPR021797|IPR031726 O-antigen ligase-related|Protein glycosylation ligase domain|Virulence factor membrane-bound polymerase, C-terminal PF04932|PF11846|PF15864 NJ56_RS00955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS00960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS00965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS00970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001829|IPR008962|IPR013783|IPR016147|IPR016148|IPR018046 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, C-terminal|Pili assembly chaperone, N-terminal|Pili assembly chaperone, bacterial|Pili assembly chaperone, conserved site GO:0030288|GO:0043711|GO:0061077|GO:0071555 G3DSA:2.60.40.10|PF00345|PF02753|PR00969|PS00635|SSF49354|SSF49584 NJ56_RS00975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR018030|IPR025885|IPR025949 Fimbrial membrane usher, conserved site|Outer membrane usher protein|PapC, N-terminal domain|PapC-like, C-terminal domain GO:0005215|GO:0005515|GO:0006810|GO:0016020 PF00577|PF13953|PF13954|PS01151|SSF141729 NJ56_RS00980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS00985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031854 Putative membrane protein FidL-like PF15941 NJ56_RS00990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SM00862|SSF46894 NJ56_RS00995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009080|IPR014729|IPR015273|IPR015803|IPR024909|IPR032678 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Cysteine-tRNA ligase|Cysteinyl-tRNA synthetase, class Ia, DALR|Cysteinyl-tRNA synthetase/mycothiol ligase|Rossmann-like alpha/beta/alpha sandwich fold|tRNA synthetases class I, catalytic domain GO:0000166|GO:0004812|GO:0004817|GO:0005524|GO:0005737|GO:0006418|GO:0006423 G3DSA:1.20.120.640|G3DSA:3.40.50.620|MF_00041|PF01406|PF09190|PR00983|SM00840|SSF47323|SSF52374|TIGR00435 NJ56_RS01000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002130|IPR020892|IPR024936|IPR029000 Cyclophilin-like domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase|Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0000413|GO:0003755|GO:0006457 G3DSA:2.40.100.10|PF00160|PIRSF001467|PR00153|PS00170|SSF50891 NJ56_RS01005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010138|IPR024654|IPR029052 Calcineurin-like phosphoesterase domain, lpxH type|Metallo-dependent phosphatase-like|UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 G3DSA:3.60.21.10|MF_00575|PF12850|SSF56300|TIGR01854 NJ56_RS01010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000031|IPR024694|IPR033747 Class I PurE|PurE domain|PurE, prokaryotic type GO:0006189 G3DSA:3.40.50.7700|MF_01929|PF00731|PIRSF001338|SM01001|SSF52255|TIGR01162 NJ56_RS01015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003135|IPR005875|IPR011054|IPR013815|IPR016185 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type|ATP-grasp fold, subdomain 1|Phosphoribosylaminoimidazole carboxylase, ATPase subunit|Pre-ATP-grasp domain|Rudiment single hybrid motif GO:0003824|GO:0004638|GO:0005524|GO:0006189 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_01928|PF02222|SSF51246|SSF52440|SSF56059|TIGR01161 NJ56_RS01020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003838 ABC transporter permease protein domain GO:0016020 PF02687 NJ56_RS01025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS01030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008265|IPR013830 Lipase, GDSL, active site|SGNH hydrolase-type esterase domain GO:0006629|GO:0016298 G3DSA:3.40.50.1110|PF13472|PS01098|SSF52266 NJ56_RS01035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR016040|IPR020904 NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SM00822|SSF51735 NJ56_RS01040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR012336|IPR013766 Tetratricopeptide-like helical domain|Thioredoxin domain|Thioredoxin-like fold GO:0005515|GO:0045454 G3DSA:1.25.40.10|G3DSA:3.40.30.10|PF00085|PF14559|PF14561|SSF48452|SSF52833 NJ56_RS01045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001107|IPR001972|IPR018080 Band 7 domain|Band 7/stomatin-like, conserved site|Stomatin family GO:0016020 PF01145|PR00721|PS01270|SM00244|SSF117892 NJ56_RS01050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002810 NfeD-like, C-terminal domain G3DSA:2.40.50.140|PF01957|SSF141322 NJ56_RS01055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000551|IPR009061|IPR011789 Cu(I)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain GO:0003677|GO:0003700|GO:0005507|GO:0006355|GO:0045893 G3DSA:1.10.1660.10|PF13411|SM00422|SSF46955|TIGR02044 NJ56_RS01060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001757|IPR006121|IPR008250|IPR017969|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256 HAD-like domain|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|P-type ATPase|P-type ATPase, transmembrane domain|P-type ATPase, A domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:2.70.150.10|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PR00943|PS00154|PS01047|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525 NJ56_RS01065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002816 Pheromone shutdown, TraB PF01963 NJ56_RS01070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004369|IPR007214 Prolyl-tRNA editing protein, YbaK/EbsC|YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 G3DSA:3.90.960.10|PF04073|PIRSF006181|SSF55826|TIGR00011 NJ56_RS01075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004843|IPR006146|IPR006179|IPR008334|IPR029052 5'-Nucleotidase, C-terminal|5'-Nucleotidase, conserved site|5'-Nucleotidase/apyrase|Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0000166|GO:0009166|GO:0016787|GO:0016788|GO:0046872 G3DSA:3.60.21.10|G3DSA:3.90.780.10|PF00149|PF02872|PR01607|PS00785|PS00786|SSF55816|SSF56300 NJ56_RS01080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003148|IPR004771|IPR006153|IPR016040 Cation/H+ exchanger|K+/H+ exchanger|NAD(P)-binding domain|Regulator of K+ conductance, N-terminal GO:0006812|GO:0006813|GO:0008324|GO:0015299|GO:0016021|GO:0055085 G3DSA:1.20.91.10|G3DSA:3.40.50.720|PF00999|PF02254|SSF51735|TIGR00932 NJ56_RS01085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011611|IPR029056 Carbohydrate kinase PfkB|Ribokinase-like G3DSA:3.40.1190.20|PF00294|SSF53613 NJ56_RS01090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 G3DSA:1.10.287.210|G3DSA:3.30.1890.10|PF02706|SSF160355 NJ56_RS01095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011051|IPR014710|IPR027565 Cupin fold metalloprotein, WbuC family|RmlC-like cupin domain|RmlC-like jelly roll fold G3DSA:2.60.120.10|SSF51182|TIGR04366 NJ56_RS01100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001296 Glycosyl transferase, family 1 G3DSA:3.40.50.2000|PF00534|SSF53756 NJ56_RS01105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003331|IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like|UDP-N-acetylglucosamine 2-epimerase domain GO:0008761 G3DSA:3.40.50.2000|PF02350|SSF53756|TIGR00236 NJ56_RS01110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001509|IPR011051|IPR014710|IPR016040 NAD(P)-binding domain|NAD-dependent epimerase/dehydratase|RmlC-like cupin domain|RmlC-like jelly roll fold GO:0003824|GO:0050662 G3DSA:2.60.120.10|G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|SSF51182|SSF51735 NJ56_RS01115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003869|IPR013692|IPR016040 NAD(P)-binding domain|Polysaccharide biosynthesis protein, CapD-like domain|UDP-glucose 4-epimerase CapD, C-terminal domain GO:0003978|GO:0009103 G3DSA:3.40.50.720|PF02719|PF08485|SSF51735 NJ56_RS01120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001296 Glycosyl transferase, family 1 G3DSA:3.40.50.2000|PF00534|SSF53756 NJ56_RS01130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 NJ56_RS01140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001509|IPR016040 NAD(P)-binding domain|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|SSF51735 NJ56_RS01145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000888|IPR011051|IPR014710 RmlC-like cupin domain|RmlC-like jelly roll fold|dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 G3DSA:2.60.120.10|PD001462|PF00908|SSF51182 NJ56_RS01150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013445|IPR016040 CDP-glucose 4,6-dehydratase|NAD(P)-binding domain G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|SSF51735|TIGR02622 NJ56_RS01155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005835|IPR013446|IPR029044 Glucose-1-phosphate cytidylyltransferase|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain GO:0009058|GO:0016779|GO:0047343 G3DSA:3.90.550.10|PF00483|SSF53448|TIGR02623 NJ56_RS01165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001015|IPR019772 Ferrochelatase|Ferrochelatase, active site GO:0004325|GO:0006783 G3DSA:3.40.50.1400|MF_00323|PF00762|PS00534|SSF53800|TIGR00109 NJ56_RS01170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000850|IPR006259|IPR007862|IPR027417|IPR033690 Adenylate kinase subfamily|Adenylate kinase, active site lid domain|Adenylate kinase, conserved site|Adenylate kinase/UMP-CMP kinase|P-loop containing nucleoside triphosphate hydrolase GO:0004017|GO:0005524|GO:0006139|GO:0016776|GO:0019205 G3DSA:3.40.50.300|MF_00235|PF00406|PF05191|PR00094|PS00113|SSF52540|TIGR01351 NJ56_RS01175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001404|IPR003594|IPR019805|IPR020568|IPR020575 Heat shock protein Hsp90 family|Heat shock protein Hsp90, N-terminal|Heat shock protein Hsp90, conserved site|Histidine kinase-like ATPase, C-terminal domain|Ribosomal protein S5 domain 2-type fold GO:0005524|GO:0006457|GO:0006950|GO:0051082 G3DSA:3.30.565.10|MF_00505|PF00183|PF02518|PIRSF002583|PR00775|PS00298|SM00387|SSF110942|SSF54211|SSF55874 NJ56_RS01180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000093|IPR006171|IPR015967|IPR023627|IPR023628 DNA recombination protein RecR|Recombination protein RecR|Recombination protein RecR, C4-type zinc finger|Recombination protein RecR, conserved site|TOPRIM domain GO:0003677|GO:0006281|GO:0006310 G3DSA:3.40.1360.10|MF_00017|PF02132|PF13662|PS01300|SM00493|SSF111304|TIGR00615 NJ56_RS01185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004401 Nucleoid-associated protein YbaB/EbfC family G3DSA:3.30.1310.10|MF_00274|PF02575|PIRSF004555|SSF82607|TIGR00103 NJ56_RS01190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001270|IPR003593|IPR008921|IPR012763|IPR021029|IPR022001|IPR022754|IPR027417 AAA+ ATPase domain|ClpA/B family|DNA polymerase III subunit tau, DnaB-binding domain IV|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, gamma subunit, domain III|DNA polymerase III, subunit gamma/ tau|DNA polymerase III, tau subunit, domain V|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003887|GO:0005524|GO:0006260|GO:0009360 G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF12168|PF12169|PF12170|PF13177|PR00300|SM00382|SSF48019|SSF52540|TIGR02397 NJ56_RS01195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR013727 HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.5.1040|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00304|SM00387|SM00388|SSF47384|SSF55874 NJ56_RS01200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991|IPR016032 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 NJ56_RS01205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|PF03401|PIRSF017082|SSF53850 NJ56_RS01210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009936 Protein of unknown function DUF1468 PF07331 NJ56_RS01215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002823 Protein of unknown function DUF112, transmembrane PF01970 NJ56_RS01220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000836|IPR005764|IPR029057 Adenine phosphoribosyl transferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0003999|GO:0005737|GO:0006168|GO:0009116 G3DSA:3.40.50.2020|MF_00004|PF00156|SSF53271|TIGR01090 NJ56_RS01225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007401 Protein of unknown function DUF454 PF04304|PIRSF016789 NJ56_RS01230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010890 Primosomal replication PriB/PriC G3DSA:1.10.287.540|PF07445 NJ56_RS01235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019630 Protein of unknown function DUF2496, YbaM-related PF10689 NJ56_RS01240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006685|IPR006686|IPR010920|IPR011014|IPR011066|IPR024393|IPR025692 LSM domain|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, conserved site|Mechanosensitive ion channel MscS, porin domain|Mechanosensitive ion channel MscS, transmembrane-2|Mechanosensitive ion channel inner membrane domain 1 GO:0016020|GO:0055085 G3DSA:1.10.287.620|G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|PF12794|PF12795|PS01246|SSF50182|SSF82689|SSF82861 NJ56_RS01245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003787|IPR027396 DsrEFH-like|Sulphur relay, DsrE/F-like protein G3DSA:3.40.1260.10|PF02635|SSF75169 NJ56_RS01250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001647|IPR009057|IPR011075|IPR013572|IPR023772 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox domain-like|Tetracycline transcriptional regulator, TetR-related, C-terminal|Transcription regulator MAATS, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF08361|PR00455|PS01081|SSF46689|SSF48498 NJ56_RS01255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.20.1600.10|PF00529|PF16576|SSF111369|TIGR01730 NJ56_RS01260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001036|IPR004764|IPR027463 Acriflavin resistance protein|Hydrophobe/amphiphile efflux-1 HAE1|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00915 NJ56_RS01265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002150|IPR027493|IPR034704 L28p-like|Ribosomal protein L31|Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00502|PF01197|PR01249|SSF143800|TIGR00105 NJ56_RS01270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00251|PF00444|PS00828|SSF57840|TIGR01022 NJ56_RS01280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019693 Biofilm formation regulator YbaJ PF10757 NJ56_RS01285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007985 Haemolysin expression modulating, HHA G3DSA:1.20.1280.40|PF05321|SSF68989 NJ56_RS01295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011991|IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Winged helix-turn-helix DNA-binding domain GO:0003824|GO:0006281 G3DSA:1.10.10.10|PF01035|SSF46767|TIGR00589 NJ56_RS01300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003703|IPR029069 Acyl-CoA thioesterase|HotDog domain GO:0006637|GO:0047617 G3DSA:3.10.129.10|PF13622|SSF54637|TIGR00189 NJ56_RS01305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001905|IPR002229|IPR018047|IPR024041 Ammonium transporter|Ammonium transporter AmtB-like domain|Ammonium transporter, conserved site|Blood group Rhesus C/E/D polypeptide GO:0008519|GO:0015696|GO:0016020|GO:0072488 G3DSA:1.10.3430.10|PF00909|PR00342|PS01219|SSF111352|TIGR00836 NJ56_RS01310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002187|IPR002332|IPR011322|IPR015867|IPR017918 Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein P-II, urydylation site|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII, conserved site|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0006808|GO:0030234 G3DSA:3.30.70.120|PF00543|PIRSF039144|PR00340|PS00496|PS00638|SM00938|SSF54913 NJ56_RS01315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 NJ56_RS01320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 NJ56_RS01325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000485|IPR011008|IPR011991|IPR019887|IPR019888 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|SM00344|SSF46785|SSF54909 NJ56_RS01330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|PF00291|SSF53686 NJ56_RS01335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000150|IPR006379|IPR023214|IPR023938 Cof family|HAD-like domain|HAD-superfamily hydrolase, subfamily IIB|HMP-PP phosphatase GO:0016787|GO:0016818 G3DSA:3.40.50.1000|MF_01847|PF08282|PS01228|PS01229|SSF56784|TIGR00099|TIGR01484 NJ56_RS01340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000914|IPR011991|IPR025370 Solute-binding protein family 5 domain|Transcriptional regulator SgrR, N-terminal HTH domain|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PF12793|SSF53850 NJ56_RS01345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014729|IPR018317 Queuosine biosynthesis protein QueC|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:3.40.50.620|MF_01633|PF06508|PIRSF006293|SSF52402|TIGR00364 NJ56_RS01350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006684|IPR029069 Acyl-CoA thioester hydrolase YbgC/YbaW family|HotDog domain GO:0016787 G3DSA:3.10.129.10|PF13279|PIRSF003230|SSF54637|TIGR00051 NJ56_RS01355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004509|IPR010994 Competence protein ComEA, helix-hairpin-helix domain|RuvA domain 2-like G3DSA:1.10.150.20|G3DSA:1.10.150.310|PF12836|SSF47781|TIGR00426 NJ56_RS01360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000297|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|Trigger factor/SurA domain GO:0016853 G3DSA:1.10.4030.10|G3DSA:3.10.50.40|PF13145|PF13624|SSF109998|SSF54534 NJ56_RS01365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 NJ56_RS01370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003111|IPR003593|IPR003959|IPR004815|IPR008268|IPR008269|IPR014721|IPR015947|IPR020568|IPR027417|IPR027543 AAA+ ATPase domain|ATPase, AAA-type, core|Lon protease, bacterial|Lon protease, bacterial/eukaryotic-type|Lon, substrate-binding domain|P-loop containing nucleoside triphosphate hydrolase|PUA-like domain|Peptidase S16, Lon proteolytic domain|Peptidase S16, active site|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 G3DSA:1.10.4060.10|G3DSA:1.10.8.60|G3DSA:2.30.130.40|G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01973|PF00004|PF02190|PF05362|PIRSF001174|PR00830|PS01046|SM00382|SM00464|SSF52540|SSF54211|SSF88697|TIGR00763 NJ56_RS01375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR003959|IPR004487|IPR010603|IPR019489|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp protease, ATP-binding subunit ClpX|P-loop containing nucleoside triphosphate hydrolase|Zinc finger, ClpX C4-type GO:0005524|GO:0006457|GO:0008270|GO:0046983|GO:0051082 G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00175|PF06689|PF07724|PF10431|SM00382|SM00994|SM01086|SSF52540|SSF57716|TIGR00382 NJ56_RS01380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001907|IPR018215|IPR023562|IPR029045|IPR033135 ATP-dependent Clp protease proteolytic subunit|Clp protease proteolytic subunit /Translocation-enhancing protein TepA|ClpP, Ser active site|ClpP, histidine active site|ClpP/crotonase-like domain GO:0004252|GO:0006508 G3DSA:3.90.226.10|MF_00444|PF00574|PR00127|PS00381|PS00382|SSF52096|TIGR00493 NJ56_RS01385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001179|IPR005215|IPR008880|IPR008881|IPR027304 FKBP-type peptidyl-prolyl cis-trans isomerase domain|Trigger factor|Trigger factor, C-terminal|Trigger factor, ribosome-binding, bacterial|Trigger factor/SurA domain GO:0006457|GO:0015031 G3DSA:1.10.3120.10|G3DSA:3.30.70.1050|MF_00303|PF00254|PF05697|PF05698|PIRSF003095|SSF102735|SSF109998|SSF54534|TIGR00115 NJ56_RS01395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002634 BolA protein G3DSA:3.30.300.90|PF01722|PIRSF003113|SSF82657 NJ56_RS01400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005586|IPR005619 ABC-type transport auxiliary lipoprotein component|Uncharacterised protein family, YajG G3DSA:3.40.50.10610|PF03923 NJ56_RS01405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004752|IPR011701|IPR020846 AmpG-like permease/Acetyl-coenzyme A transporter 1|Major facilitator superfamily|Major facilitator superfamily domain GO:0016020|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473|TIGR00901 NJ56_RS01410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 G3DSA:2.40.230.20|PF03502|SSF111364 NJ56_RS01415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002429|IPR006333|IPR008972|IPR010514|IPR011759 COX aromatic rich motif|Cupredoxin|Cytochrome C oxidase subunit II, transmembrane domain|Cytochrome c oxidase subunit II-like C-terminal|Cytochrome o ubiquinol oxidase subunit II GO:0004129|GO:0005507|GO:0008827|GO:0016020|GO:0016021|GO:0016682|GO:0022900|GO:0055114 G3DSA:1.10.287.90|G3DSA:2.60.40.420|PF00116|PF06481|PIRSF000292|SSF49503|SSF81464|TIGR01433 NJ56_RS01420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000883|IPR014207|IPR023615|IPR023616 Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I, copper-binding site|Cytochrome c oxidase-like, subunit I domain|Cytochrome o ubiquinol oxidase, subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0016682|GO:0020037|GO:0055114 G3DSA:1.10.287.70|G3DSA:1.20.210.10|PF00115|PR01165|PS00077|SSF81442|TIGR02843 NJ56_RS01425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000298|IPR013833|IPR014206 Cytochrome c oxidase, subunit III, 4-helical bundle|Cytochrome c oxidase-like subunit III|Cytochrome o ubiquinol oxidase, subunit III GO:0004129|GO:0005886|GO:0008827|GO:0015002|GO:0016020|GO:0019646|GO:0022904 G3DSA:1.20.120.80|PF00510|SSF81452|TIGR02842 NJ56_RS01430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005171|IPR014210 Cytochrome C oxidase subunit IV, prokaryotes|Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 PF03626|TIGR02847 NJ56_RS01435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000537|IPR006369|IPR030470 Protohaem IX farnesyltransferase|UbiA prenyltransferase conserved site|UbiA prenyltransferase family GO:0008495|GO:0016021|GO:0016765|GO:0048034 MF_00154|PF01040|PS00943|TIGR01473 NJ56_RS01440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS01445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007551|IPR035570|IPR035571 Protein of unknown function DUF520|UPF0234 N-terminal domain|UPF0234/UPF0381 domain G3DSA:3.30.70.860|G3DSA:3.30.70.990|MF_00632|PF04461|SSF89963 NJ56_RS01450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003710|IPR008927|IPR013328|IPR013332|IPR013752|IPR016040 6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Ketopantoate reductase ApbA/PanE|Ketopantoate reductase, C-terminal domain|Ketopantoate reductase, N-terminal domain|NAD(P)-binding domain GO:0005737|GO:0008677|GO:0015940|GO:0016491|GO:0050661|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF02558|PF08546|SSF48179|SSF51735|TIGR00745 NJ56_RS01455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002818|IPR006287|IPR029062 Class I glutamine amidotransferase-like|DJ-1/PfpI|Protein DJ-1 G3DSA:3.40.50.880|PF01965|SSF52317|TIGR01383 NJ56_RS01460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000849|IPR011701|IPR020846|IPR021159 Glycerate/sugar phosphate transporter, conserved site|Major facilitator superfamily|Major facilitator superfamily domain|Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PIRSF002808|PS00942|SSF103473|TIGR00881 NJ56_RS01465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:3.40.190.10|PF13343|SSF53850 NJ56_RS01470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR017116 HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, PgtB|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.5.340|G3DSA:3.30.565.10|PF00512|PF02518|PIRSF037119|PR00344|SM00304|SM00387|SM00388|SSF47384|SSF55874 NJ56_RS01475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR002078|IPR002197|IPR009057|IPR011006|IPR025944|IPR027417 CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox domain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF02954|PF14532|PS00688|SM00448|SSF46689|SSF52172|SSF52540 NJ56_RS01480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001763|IPR003720|IPR004114|IPR014729|IPR020536|IPR026340 Rhodanese-like domain|Rossmann-like alpha/beta/alpha sandwich fold|THUMP domain|Thiazole biosynthesis domain|Thil, AANH domain|tRNA sulfurtransferase ThiI GO:0003723|GO:0004810|GO:0005737|GO:0016783|GO:0034227|GO:0052837 G3DSA:3.30.2300.10|G3DSA:3.30.70.1510|G3DSA:3.40.250.10|G3DSA:3.40.50.620|MF_00021|PF02568|PF02926|SM00981|SSF143437|SSF52402|SSF52821|TIGR00342|TIGR04271 NJ56_RS01485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 G3DSA:1.10.287.1040|MF_00337|PD028235|PF02609|PIRSF006488|SSF116842|TIGR01280 NJ56_RS01490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000092|IPR008949|IPR033749 Isoprenoid synthase domain|Polyprenyl synthetase|Polyprenyl synthetase, conserved site GO:0008299 G3DSA:1.10.600.10|PF00348|PS00444|PS00723|SSF48576 NJ56_RS01495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005474|IPR005475|IPR005477|IPR009014|IPR020826|IPR029061|IPR033248 Deoxyxylulose-5-phosphate synthase|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase binding site|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase-like, pyrimidine-binding domain GO:0003824|GO:0008152|GO:0008661|GO:0016114 G3DSA:3.40.50.920|G3DSA:3.40.50.970|MF_00315|PF02779|PF02780|PF13292|PS00801|PS00802|SM00861|SSF52518|SSF52922|TIGR00204 NJ56_RS01500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007686|IPR026037 Phosphatidylglycerophosphatase A|YutG/PgpA domain GO:0006629|GO:0008962 G3DSA:1.10.3760.10|PF04608|PIRSF006162|SSF101307 NJ56_RS01505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006283|IPR010918|IPR016188 AIR synthase-related protein, C-terminal domain|PurM-like, N-terminal domain|Thiamine-monophosphate kinase GO:0009030|GO:0009228 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_02128|PF00586|PF02769|PIRSF005303|SSF55326|SSF56042|TIGR01379 NJ56_RS01510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006027|IPR011605 NusB antitermination factor|NusB/RsmB/TIM44 GO:0003723|GO:0006353|GO:0006355 G3DSA:1.10.940.10|MF_00073|PF01029|SSF48013|TIGR01951 NJ56_RS01515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002180|IPR034964 Lumazine synthase|Lumazine/riboflavin synthase GO:0000906|GO:0009231|GO:0009349 G3DSA:3.40.50.960|MF_00178|PF00885|SSF52121|TIGR00114 NJ56_RS01520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002125|IPR002734|IPR004794|IPR011549|IPR016192|IPR016193|IPR024072 APOBEC/CMP deaminase, zinc-binding|Bacterial bifunctional deaminase-reductase, C-terminal|Cytidine and deoxycytidylate deaminase domain|Cytidine deaminase-like|Dihydrofolate reductase-like domain|Riboflavin biosynthesis protein RibD|Riboflavin-specific deaminase, C-terminal GO:0003824|GO:0008270|GO:0008703|GO:0008835|GO:0009231|GO:0016787|GO:0050661|GO:0055114 G3DSA:3.40.140.10|G3DSA:3.40.430.10|PF00383|PF01872|PIRSF006769|PS00903|SSF53597|SSF53927|TIGR00227|TIGR00326 NJ56_RS01525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003796|IPR005144 ATP-cone domain|Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 MF_00440|PF03477|TIGR00244 NJ56_RS01530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005665|IPR022645|IPR022646|IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 G3DSA:1.20.1640.10|MF_01464_B|PF02355|PF07549|PR01755|SSF82866|TIGR00916|TIGR00966 NJ56_RS01535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005791|IPR022645|IPR022646|IPR022813|IPR027398 Protein translocase subunit SecD|Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|SecD export protein N-terminal TM domain GO:0006886|GO:0015450 G3DSA:1.20.1640.10|MF_01463_B|PF02355|PF07549|PF13721|SSF82866|TIGR00916|TIGR01129 NJ56_RS01540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003849 Preprotein translocase YajC PF02699|PR01853|SM01323|TIGR00739 NJ56_RS01545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002616|IPR004803 tRNA-guanine transglycosylase|tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0016763|GO:0101030 G3DSA:3.20.20.105|MF_00168|PF01702|SSF51713|TIGR00430|TIGR00449 NJ56_RS01550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 G3DSA:3.40.1780.10|MF_00113|PF02547|SSF111337|TIGR00113 NJ56_RS01555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007431|IPR023491 Acyl carrier protein phosphodiesterase|Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 MF_01950|PF04336|PIRSF011489 NJ56_RS01560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000866|IPR012336|IPR019479|IPR024706 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Peroxiredoxin, C-terminal|Thioredoxin-like fold GO:0016209|GO:0016491|GO:0051920|GO:0055114 G3DSA:3.30.1020.10|G3DSA:3.40.30.10|PF00578|PF10417|PIRSF000239|SSF52833 NJ56_RS01565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR016040 NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00081|SSF51735 NJ56_RS01570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004185|IPR006047|IPR013783|IPR017069|IPR017853 Glycoside hydrolase superfamily|Glycoside hydrolase, family 13, N-terminal Ig-like domain|Glycosyl hydrolase, family 13, catalytic domain|Immunoglobulin-like fold|Maltodextrin glucosidase GO:0003824|GO:0004553|GO:0004558|GO:0005737|GO:0005975 G3DSA:2.60.40.10|G3DSA:2.60.40.1180|G3DSA:3.20.20.80|PF00128|PF02903|PIRSF036918|SM00642|SSF51011|SSF51445 NJ56_RS01575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0003333|GO:0006810|GO:0006865|GO:0015171|GO:0016020|GO:0016021|GO:0055085 PF00324|PIRSF006060|PS00218 NJ56_RS01580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 PF05525|TIGR00796 NJ56_RS01585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011862|IPR024370 PBP domain|Phosphate binding protein GO:0006810 G3DSA:3.40.190.10|PF12849|SSF53850|TIGR02136 NJ56_RS01590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR003594|IPR003661|IPR004358|IPR013767|IPR014310|IPR021766 Histidine kinase-like ATPase, C-terminal domain|PAS domain|PAS fold|Protein of unknown function DUF3329|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphate regulon sensor PhoR|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0006355|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF00989|PF02518|PF11808|PR00344|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229|TIGR02966 NJ56_RS01595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011879|IPR011991|IPR016032 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000156|GO:0000160|GO:0003677|GO:0006355|GO:0006817 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172|TIGR02154 NJ56_RS01600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004593|IPR004843|IPR026843|IPR029052 Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like|Nuclease SbcCD subunit D|Nuclease SbcCD subunit D, C-terminal domain GO:0004519|GO:0006259|GO:0008408|GO:0016787 G3DSA:3.60.21.10|PF00149|PF12320|SSF56300|TIGR00619 NJ56_RS01605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:1.20.120.330|G3DSA:3.40.50.300|PF13558|SSF52540 NJ56_RS01610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000600 ROK family G3DSA:3.30.420.40|PF00480|PS01125|SSF53067 NJ56_RS01615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007476 Putative exonuclease, RdgC GO:0006310 MF_00194|PF04381 NJ56_RS01620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009664|IPR011051|IPR014710 Pyrimidine/purine nucleoside phosphorylase|RmlC-like cupin domain|RmlC-like jelly roll fold G3DSA:2.60.120.10|MF_01537|PF06865|SSF51182 NJ56_RS01625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010843 Uncharacterised protein family AroM G3DSA:3.40.50.1860|PD037589|PF07302 NJ56_RS01630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009561 Protein of unknown function DUF1177 PF06675 NJ56_RS01635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 PF03169 NJ56_RS01640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005471|IPR011991|IPR014757|IPR029016 GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 NJ56_RS01645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000623|IPR023000|IPR027417|IPR027544|IPR031322 P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase 2|Shikimate kinase, conserved site|Shikimate kinase/Threonine synthase-like 1|Shikimate kinase/gluconokinase GO:0004765|GO:0009073 G3DSA:3.40.50.300|MF_00109|MF_01269|PF01202|PR01100|PS01128|SSF52540 NJ56_RS01650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000531|IPR010105|IPR012910 TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain|TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0006810|GO:0015891|GO:0016020 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01783 NJ56_RS01655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002491 ABC transporter periplasmic binding domain GO:0005488 G3DSA:3.40.50.1980|PF01497|SSF53807 NJ56_RS01660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010854|IPR025543 Dodecin-like|Domain of unknown function DUF1471 G3DSA:3.30.1660.10|PF07338|SSF159871 NJ56_RS01665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF00583|SSF55729 NJ56_RS01670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 SSF90123 NJ56_RS01675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009875|IPR009926|IPR012349|IPR023787 FMN-binding split barrel|PilZ domain|Type III secretion system flagellar brake protein YcgR|Type III secretion system flagellar brake protein YcgR, N-terminal GO:0035438|GO:0048037|GO:0071945 G3DSA:2.30.110.10|G3DSA:2.40.10.220|MF_01457|PF07238|PF07317 NJ56_RS01680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000965|IPR012134|IPR015590|IPR016161|IPR016162|IPR020593 Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde/histidinol dehydrogenase|GPR domain|Gamma-glutamyl phosphate reductase GPR, conserved site|Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0008152|GO:0016491|GO:0050661|GO:0055114 G3DSA:3.40.605.10|MF_00412|PF00171|PIRSF000151|PS01223|SSF53720|TIGR00407 NJ56_RS01685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001048|IPR001057|IPR002478|IPR005715|IPR011529|IPR015947|IPR019797 Aspartate/glutamate/uridylate kinase|Glutamate 5-kinase|Glutamate 5-kinase, conserved site|Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase|Glutamate/acetylglutamate kinase|PUA domain|PUA-like domain GO:0003723|GO:0004349|GO:0005737|GO:0006561 G3DSA:2.30.130.10|G3DSA:3.40.1160.10|MF_00456|PF00696|PF01472|PIRSF000729|PR00474|PS00902|SM00359|SSF53633|SSF88697|TIGR01027 NJ56_RS01690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 MF_01178|PF07417 NJ56_RS01695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010520|IPR029058 Alpha/Beta hydrolase fold|UPF0255 family G3DSA:1.20.1440.110|G3DSA:3.40.50.1820|MF_01063|PF06500|SSF53474 NJ56_RS01700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000836|IPR023747|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like|Xanthine-guanine phosphoribosyltransferase GO:0000310|GO:0009116 G3DSA:3.40.50.2020|MF_01903|PF00156|SSF53271 NJ56_RS01705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001160|IPR002933|IPR011650 Peptidase M20|Peptidase M20, dimerisation domain|Peptidase M20C, Xaa-His dipeptidase GO:0006508|GO:0008152|GO:0016787 G3DSA:3.40.630.10|PF01546|PF07687|PIRSF016599|PR00934|SSF53187|TIGR01893 NJ56_RS01710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001126|IPR017961|IPR022880|IPR024728 DNA polymerase IV|DNA polymerase type-Y, HhH motif|DNA polymerase, Y-family, little finger domain|UmuC domain GO:0003684|GO:0003887|GO:0006281 G3DSA:1.10.150.20|G3DSA:3.30.1490.100|G3DSA:3.30.70.270|MF_01113|PF00817|PF11798|PF11799|SSF100879|SSF56672 NJ56_RS01715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017946|IPR030395 Glycerophosphodiester phosphodiesterase domain|PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 G3DSA:3.20.20.190|PF03009|SSF51695 NJ56_RS01720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007495 (Na+)-NQR maturation factor NqrM PF04400 NJ56_RS01725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003374|IPR024932 ApbE-like domain|Flavin transferase ApbE GO:0017013 G3DSA:3.10.520.10|PF02424|PIRSF006268|SSF143631 NJ56_RS01730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001041|IPR001433|IPR008333|IPR010205|IPR012675|IPR017938 2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|Na(+)-translocating NADH-quinone reductase subunit F|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Riboflavin synthase-like beta-barrel GO:0006814|GO:0009055|GO:0016021|GO:0016491|GO:0016655|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|MF_00430|PF00111|PF00175|PF00970|PIRSF000044|SSF52343|SSF54292|SSF63380|TIGR01941 NJ56_RS01735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003667|IPR010967 Na(+)-translocating NADH-quinone reductase subunit E|Rnf-Nqr subunit, membrane protein GO:0009276|GO:0016020|GO:0016021|GO:0016655|GO:0022904|GO:0055114 MF_00429|PF02508|PIRSF006102|TIGR01940 NJ56_RS01740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003667|IPR011292 Na(+)-translocating NADH-quinone reductase subunit D|Rnf-Nqr subunit, membrane protein GO:0016020|GO:0016655|GO:0055114 MF_00428|PF02508|PIRSF006102|TIGR01939 NJ56_RS01745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007329|IPR010204 FMN-binding|Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016020|GO:0016021|GO:0016655|GO:0055114 MF_00427|PF04205|PIRSF009437|SM00900|TIGR01938 NJ56_RS01750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004338|IPR010966 NADH-quinone reductase NQR2/RnfD|Na(+)-translocating NADH-quinone reductase subunit B GO:0006810|GO:0009276|GO:0010181|GO:0016020|GO:0016021|GO:0016655|GO:0022904|GO:0055114 MF_00426|PF03116|PIRSF016055|TIGR01937 NJ56_RS01755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008703|IPR022615 Na(+)-translocating NADH-quinone reductase subunit A|Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0006814|GO:0016655|GO:0055114 G3DSA:2.40.50.100|MF_00425|PF05896|PF11973|TIGR01936 NJ56_RS01760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005490 L,D-transpeptidase catalytic domain GO:0016740 G3DSA:2.40.440.10|PF03734|SSF141523 NJ56_RS01765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026869|IPR029055 Nucleophile aminohydrolases, N-terminal|Putative glutamine amidotransferase type 2 G3DSA:3.60.20.10|PF13230|SSF56235 NJ56_RS01770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001347|IPR004515 Phosphoheptose isomerase|Sugar isomerase (SIS) GO:0005737|GO:0008968|GO:0097367|GO:1901135 G3DSA:3.40.50.10490|MF_00067|PF13580|SSF53697|TIGR00441 NJ56_RS01775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0008152|GO:0016627|GO:0033539|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF09317|SSF47203|SSF56645 NJ56_RS01785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006054|IPR006309|IPR012337|IPR013520 DNA polymerase 3, epsilon subunit|DNA polymerase III epsilon subunit, exonuclease domain|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H-like domain GO:0003676|GO:0003677|GO:0003887|GO:0006260 G3DSA:3.30.420.10|PF00929|SM00479|SSF53098|TIGR00573|TIGR01406 NJ56_RS01790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002156|IPR012337|IPR022892 Ribonuclease H domain|Ribonuclease H-like domain|Ribonuclease HI GO:0003676|GO:0004523 G3DSA:3.30.420.10|MF_00042|PF00075|SSF53098 NJ56_RS01795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008152|GO:0008168 G3DSA:3.40.50.150|PF08241|SSF53335 NJ56_RS01800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001279|IPR017782|IPR032282 Hydroxyacylglutathione hydrolase|Hydroxyacylglutathione hydrolase, C-terminal domain|Metallo-beta-lactamase GO:0004416|GO:0019243 G3DSA:3.60.15.10|MF_01374|PF00753|PF16123|PIRSF005457|SM00849|SSF56281|TIGR03413 NJ56_RS01805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000189|IPR008258|IPR018392|IPR023346 LysM domain|Lysozyme-like domain|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1 GO:0000270|GO:0008933|GO:0016020 G3DSA:1.10.530.10|G3DSA:3.10.350.10|PF01464|PF01476|PS00922|SM00257|SSF53955|SSF54106 NJ56_RS01810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005135 Endonuclease/exonuclease/phosphatase G3DSA:3.60.10.10|PF03372|SSF56219 NJ56_RS01845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR017730|IPR018368|IPR019489|IPR027417|IPR028299 AAA+ ATPase domain|ATPase, AAA-type, core|Chaperonin ClpB|Clp ATPase, C-terminal|Clp, N-terminal|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009408|GO:0016485|GO:0019538 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|SM00382|SM01086|SSF52540|SSF81923|TIGR03346 NJ56_RS01850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003730|IPR011324 Cytotoxic necrotizing factor-like, catalytic|Multi-copper polyphenol oxidoreductase G3DSA:3.60.140.10|PF02578|SSF64438|TIGR00726 NJ56_RS01855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002942|IPR006145|IPR006224|IPR006225|IPR020103 Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|PS01129|SM00363|SSF55120|SSF55174|TIGR00005 NJ56_RS01865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR017689 Outer membrane protein assembly factor BamD|Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.20.10|MF_00922|PF13525|SSF48452|TIGR03302 NJ56_RS01870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 G3DSA:3.30.160.100|PF02482|SSF69754|TIGR00741 NJ56_RS01875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001086|IPR002701|IPR008242|IPR010952|IPR018528|IPR020822 Bifunctional P-protein, chorismate mutase/prephenate dehydratase|Chorismate mutase|Chorismate mutase, gammaproteobacteria|Chorismate mutase, type II|Prephenate dehydratase|Prephenate dehydratase, conserved site GO:0004106|GO:0004664|GO:0005737|GO:0009094|GO:0046417 G3DSA:1.20.59.10|G3DSA:3.30.70.260|G3DSA:3.40.190.10|PF00800|PF01817|PIRSF001500|PS00857|PS00858|SM00830|SSF48600|SSF53850|SSF55021|TIGR01797 NJ56_RS01880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002701|IPR003099|IPR008244|IPR008927|IPR011277|IPR016040|IPR020822 6-phosphogluconate dehydrogenase C-terminal domain-like|Bifunctional chorismate mutase/prephenate dehydrogenase T-protein|Chorismate mutase|Chorismate mutase, T-protein|Chorismate mutase, type II|NAD(P)-binding domain|Prephenate dehydrogenase GO:0004106|GO:0004665|GO:0005737|GO:0006571|GO:0008977|GO:0046417|GO:0055114 G3DSA:1.10.3660.10|G3DSA:1.20.59.10|G3DSA:3.40.50.720|PF01817|PF02153|PIRSF001499|SM00830|SSF48179|SSF48600|SSF51735|TIGR01799 NJ56_RS01885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006218|IPR006219|IPR013785 Aldolase-type TIM barrel|DAHP synthetase I/KDSA|DHAP synthase, class 1 GO:0003824|GO:0003849|GO:0009058|GO:0009073 G3DSA:3.20.20.70|PF00793|PIRSF001361|SSF51569|TIGR00034 NJ56_RS01890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR007492|IPR011006 CheY-like superfamily|LytTR DNA-binding domain|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677 G3DSA:2.20.25.10|G3DSA:2.40.50.40|G3DSA:3.40.50.2300|PF00072|PF04397|SM00448|SM00850|SSF52172 NJ56_RS01895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 PF03605|PIRSF004539|TIGR00770 NJ56_RS01900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007433 Protein of unknown function DUF481 PF04338 NJ56_RS01905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001857|IPR008991|IPR018257 Ribosomal protein L19|Ribosomal protein L19, conserved site|Translation protein SH3-like domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00402|PF01245|PIRSF002191|PR00061|PS01015|SSF50104|TIGR01024 NJ56_RS01910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002649|IPR016009|IPR029026|IPR029028 Alpha/beta knot methyltransferases|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA (guanine-N1-)-methyltransferase, bacteria|tRNA methyltransferase TRMD/TRM10-type domain GO:0008033|GO:0052906 G3DSA:1.10.1270.20|G3DSA:3.40.1280.10|MF_00605|PF01746|PIRSF000386|SSF75217|TIGR00088 NJ56_RS01915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002676|IPR009000|IPR011033|IPR011961|IPR027275 16S rRNA processing protein RimM|PRC-barrel domain|PRC-barrel-like|RimM protein|Translation protein, beta-barrel domain GO:0005840|GO:0006364|GO:0043022 G3DSA:2.30.30.240|G3DSA:2.40.30.60|MF_00014|PF01782|PF05239|SSF50346|SSF50447|TIGR02273 NJ56_RS01920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000307|IPR020592|IPR023803 Ribosomal protein S16|Ribosomal protein S16 domain|Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.1320.10|MF_00385|PF00886|PS00732|SSF54565|TIGR00002 NJ56_RS01925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000897|IPR003593|IPR004125|IPR004780|IPR013822|IPR022941|IPR027417 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle protein Ffh|Signal recognition particle, SRP54 subunit|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, M-domain|Signal recognition particle, SRP54 subunit, helical bundle GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500 G3DSA:1.10.260.30|G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00306|PF00448|PF02881|PF02978|PS00300|SM00382|SM00962|SM00963|SSF47446|SSF52540|TIGR00959 NJ56_RS01930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PF01578 NJ56_RS01935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002550|IPR005170|IPR016166|IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|Domain of unknown function DUF21|FAD-binding, type 2|Transporter-associated domain GO:0003824|GO:0016614|GO:0050660|GO:0055114 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF01595|PF03471|SM01091|SSF54631|SSF56176 NJ56_RS01940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003815|IPR011249 Metalloenzyme, LuxS/M16 peptidase-like|S-ribosylhomocysteinase (LuxS) GO:0003824|GO:0005506|GO:0009372|GO:0043768|GO:0046872 G3DSA:3.30.1360.80|MF_00091|PD013172|PF02664|PIRSF006160|PR01487|SSF63411 NJ56_RS01945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006334|IPR007370 Glutamate--cysteine ligase|Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 MF_00578|PF04262|SSF55931|TIGR01434 NJ56_RS01950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020143|IPR032816 SNARE associated Golgi protein|Uncharacterised protein family, RP436 PD085709|PF09335 NJ56_RS01955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006439|IPR010976|IPR023198|IPR023214 Beta-phosphoglucomutase hydrolase|HAD hydrolase, subfamily IA|HAD-like domain|Phosphoglycolate phosphatase, domain 2 GO:0008152|GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01509|TIGR02009 NJ56_RS01980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 MF_00167|PD009007|PF02599|SSF117130|TIGR00202 NJ56_RS01985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002318|IPR003156|IPR009000|IPR012947|IPR018162|IPR018163|IPR018164|IPR023033 Alanine-tRNA ligase, class IIc|Alanine-tRNA ligase, class IIc, anti-codon-binding domain|Alanine-tRNA ligase, eukaryota/bacteria|Alanyl-tRNA synthetase, class IIc, N-terminal|DHHA1 domain|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain|Translation protein, beta-barrel domain GO:0000166|GO:0003676|GO:0004813|GO:0005524|GO:0005737|GO:0006419|GO:0016876|GO:0043039 G3DSA:3.30.930.10|G3DSA:3.30.980.10|MF_00036_B|PF01411|PF02272|PF07973|PR00980|SM00863|SSF101353|SSF50447|SSF55186|SSF55681|TIGR00344 NJ56_RS01990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003783|IPR011991 Regulatory protein RecX|Winged helix-turn-helix DNA-binding domain GO:0006282 G3DSA:1.10.10.10|MF_01114|PF02631 NJ56_RS01995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR013765|IPR020584|IPR023400|IPR027417 AAA+ ATPase domain|DNA recombination and repair protein RecA|DNA recombination and repair protein RecA, C-terminal|DNA recombination/repair protein RecA, conserved site|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003697|GO:0005524|GO:0006259|GO:0006281|GO:0008094 G3DSA:3.30.250.10|G3DSA:3.40.50.300|MF_00268|PF00154|PR00142|PS00321|SM00382|SSF52540|SSF54752|TIGR02012 NJ56_RS02000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008136 CinA, C-terminal G3DSA:3.90.950.20|PF02464|SSF142433|TIGR00199 NJ56_RS02005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS02010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004646|IPR004647|IPR011167|IPR020557 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain|Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain|Fumarate lyase, conserved site|Iron-dependent fumarate hydratase GO:0003824|GO:0004333|GO:0006091|GO:0016829|GO:0016836 G3DSA:3.20.130.10|PF05681|PF05683|PIRSF001394|PS00163|SSF117457|TIGR00722|TIGR00723 NJ56_RS02015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018535 Domain of unknown function DUF1996 PF09362 NJ56_RS02025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 G3DSA:1.20.950.20|PF01292|SSF81342 NJ56_RS02030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|SM00862|SSF46894 NJ56_RS02035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024961 Type II secretion system protein C, N-terminal PF11356 NJ56_RS02040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001775|IPR004846|IPR005644|IPR013356 GspD/PilQ family|NolW-like|Type II secretion system GspD|Type II/III secretion system GO:0008565|GO:0009306|GO:0015627|GO:0015628|GO:0019867 PF00263|PF03958|PR00811|TIGR02517 NJ56_RS02045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001482|IPR003593|IPR013369|IPR027417 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system GspE|Type II secretion system protein E GO:0005524|GO:0006810|GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|SM00382|SSF160246|SSF52540|TIGR02533 NJ56_RS02050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001992|IPR003004|IPR011850|IPR018076 General secretion pathway protein F|GspF/PilC family|Type II secretion system F domain|Type II secretion system conserved site GO:0008565|GO:0009306|GO:0015627|GO:0015628|GO:0016020 PF00482|PR00812|PS00874|TIGR02120 NJ56_RS02055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000983|IPR010054|IPR012902|IPR013545 Bacterial general secretion pathway protein G-type pilin|General secretion pathway protein G|Prokaryotic N-terminal methylation site|Type II secretion system protein G GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF07963|PF08334|PR00813|PS00409|SSF54523|TIGR01710|TIGR02532 NJ56_RS02060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002416|IPR012902|IPR022346 General secretion pathway, GspH|Prokaryotic N-terminal methylation site|Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 G3DSA:3.55.40.10|PF12019|PR00885|SSF54523|TIGR01708|TIGR02532 NJ56_RS02065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003413|IPR010052|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein I|Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.1300.30|PF02501|PF07963|PS00409|SSF54523|TIGR01707|TIGR02532 NJ56_RS02070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010055|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 G3DSA:2.10.70.20|G3DSA:3.10.610.10|PF07963|PF11612|SSF54523|TIGR01711|TIGR02532 NJ56_RS02075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 G3DSA:1.10.40.60|PF03934|PIRSF002786|SSF158544|SSF54523 NJ56_RS02080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007812|IPR024230|IPR025691 GspL periplasmic domain|GspL, cytoplasmic actin-ATPase-like domain|Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 PF05134|PF12693|PIRSF015761|SSF53067|TIGR01709 NJ56_RS02085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007690|IPR023229 Type II secretion system protein M, periplasmic domain|Type II secretion system, protein M GO:0009306 G3DSA:3.30.1360.100|PF04612|SSF103054 NJ56_RS02090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000045|IPR010627|IPR014032 Peptidase A24A, N-terminal|Peptidase A24A, prepilin type IV, bacterial|Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 PF01478|PF06750|PR00864 NJ56_RS02095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019114 Chaperone lipoprotein, PulS/OutS-like PF09691 NJ56_RS02100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003610|IPR004302|IPR014756 Carbohydrate-binding module family 5/12|Cellulose/chitin-binding protein, N-terminal|Immunoglobulin E-set GO:0004553|GO:0005576|GO:0005975|GO:0030246 G3DSA:2.10.10.20|G3DSA:2.70.50.50|PF03067|SM00495|SSF51055|SSF81296 NJ56_RS02105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005625 PepSY-associated TM protein PF03929 NJ56_RS02110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000242|IPR003595|IPR016130|IPR029021 PTP type protein phosphatase|Protein-tyrosine phosphatase, active site|Protein-tyrosine phosphatase, catalytic|Protein-tyrosine phosphatase-like GO:0004725|GO:0006470|GO:0016311 G3DSA:3.90.190.10|PF00102|PR00700|PS00383|SM00194|SM00404|SSF52799 NJ56_RS02115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 G3DSA:3.30.1460.10|PF05932|SSF69635 NJ56_RS02120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009081 Phosphopantetheine binding ACP domain G3DSA:1.10.1200.10|PF00550|SSF47336 NJ56_RS02125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:1.20.1420.10 NJ56_RS02130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009483 Invasion plasmid antigen IpaD GO:0009405 G3DSA:1.20.1710.10|PF06511|SSF140693 NJ56_RS02140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006972 Secretion system effector C, SseC-like GO:0009405 G3DSA:1.20.120.330|PF04888 NJ56_RS02145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005415|IPR011716|IPR011990|IPR016379 Tetratricopeptide TPR-3|Tetratricopeptide-like helical domain|Type III secretion system, low calcium response, chaperone LcrH/SycD|Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup GO:0005515|GO:0006950 G3DSA:1.25.40.10|PF07720|PIRSF003165|PR01595|SSF48452|TIGR02552 NJ56_RS02150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006135|IPR006307|IPR029025 Type III exporter system, secretion apparatus protein BsaZ|Type III secretion system substrate exporter|Type III secretion system substrate exporter, C-terminal GO:0009306|GO:0016020|GO:0016021 G3DSA:3.40.1690.10|PF01312|PR00950|SSF160544|TIGR01404 NJ56_RS02155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002010|IPR006304 Type III secretion protein SpaR/YscT|Type III secretion system inner membrane R protein GO:0006605|GO:0006810|GO:0016020|GO:0016021 PF01311|PR00953|TIGR01401 NJ56_RS02160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002191|IPR006306 Bacterial export protein family 3|Type III secretion protein HrpO GO:0006810|GO:0009306|GO:0016020|GO:0016021 PF01313|PIRSF004669|PR00952|TIGR01403 NJ56_RS02165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005773|IPR005838 Type III secretion system inner membrane P protein|Yop virulence translocation protein R GO:0009306|GO:0015031|GO:0016020|GO:0016021 PF00813|PR01302|PS01060|PS01061|TIGR01102 NJ56_RS02170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001172|IPR001543 Flagellar motor switch FliN/Type III secretion HrcQb|Surface presentation of antigen (SpoA) GO:0003774|GO:0006935|GO:0009425|GO:0071973 G3DSA:2.30.330.10|PF01052|PR00956|SSF101801 NJ56_RS02180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:1.10.287.510 NJ56_RS02185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000194|IPR003593|IPR005714|IPR027417 AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, type III secretion system, FliI/YscN|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 G3DSA:3.40.50.300|PF00006|SM00382|SSF52540|TIGR01026 NJ56_RS02190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003065 Surface presentation of antigens protein SpaK G3DSA:3.30.1460.10|PF03519|PR01305|SSF69635 NJ56_RS02195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001712|IPR006302|IPR025505 FHIPEP conserved site|Type III secretion protein HrcV|Type III secretion system FHIPEP GO:0009306|GO:0015031|GO:0016020|GO:0016021 PF00771|PIRSF005419|PR00949|PS00994|TIGR01399 NJ56_RS02200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010812|IPR013401 Hypersensitivity response secretion-like, HrpJ|Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009405|GO:0009986|GO:0019867|GO:0030254|GO:0046903|GO:0050709 PF07201|SSF140591|TIGR02568 NJ56_RS02205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003522|IPR004846|IPR005644 NolW-like|Type II/III secretion system|Type III secretion system outer membrane pore YscC/HrcC GO:0009306 PF00263|PF03958|PR01337|TIGR02516 NJ56_RS02210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR018060|IPR020449 DNA binding HTH domain, AraC-type|Homeobox domain-like|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PR00032|SM00342|SSF46689 NJ56_RS02215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019029 Type III secretion system, PrgH/EprH-like GO:0016021 PF09480 NJ56_RS02220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 PF09392|SSF140129 NJ56_RS02225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic SSF140129 NJ56_RS02230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003282|IPR006182 Secretory protein YscJ/FliF|Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 G3DSA:3.30.70.1530|PF01514|PR01338|TIGR02544 NJ56_RS02235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013388 Type III secretion apparatus protein OrgA/MxiK GO:0009405 PF09482 NJ56_RS02240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic PD038222 NJ56_RS02250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008258|IPR023346 Lysozyme-like domain|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 NJ56_RS02255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SSF46894 NJ56_RS02265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR001789|IPR011006|IPR011991|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|SM00421|SM00448|SSF46894|SSF52172 NJ56_RS02270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001638|IPR001789|IPR003594|IPR003661|IPR004358|IPR011006 CheY-like superfamily|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain|Solute-binding protein family 3/N-terminal domain of MltF GO:0000155|GO:0000160|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|G3DSA:3.40.190.10|G3DSA:3.40.50.2300|PF00072|PF00497|PF02518|PR00344|SM00062|SM00387|SM00448|SSF47384|SSF52172|SSF53850|SSF55874 NJ56_RS02275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 G3DSA:1.20.120.160|PF01627|SSF47226 NJ56_RS02280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000432|IPR005748|IPR007695|IPR007696|IPR007860|IPR007861|IPR016151|IPR017261|IPR027417 DNA mismatch repair protein MutS|DNA mismatch repair protein MutS, C-terminal|DNA mismatch repair protein MutS, N-terminal|DNA mismatch repair protein MutS, clamp|DNA mismatch repair protein MutS, connector domain|DNA mismatch repair protein MutS, core|DNA mismatch repair protein MutS-like, N-terminal|DNA mismatch repair protein MutS/MSH|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006298|GO:0030983 G3DSA:1.10.1420.10|G3DSA:3.30.420.110|G3DSA:3.40.1170.10|G3DSA:3.40.50.300|MF_00096|PF00488|PF01624|PF05188|PF05190|PF05192|PIRSF037677|PS00486|SM00533|SM00534|SSF48334|SSF52540|SSF53150|SSF55271|TIGR01070 NJ56_RS02285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000943|IPR007624|IPR007627|IPR007630|IPR009042|IPR011991|IPR012761|IPR013324|IPR013325|IPR014284 RNA polymerase sigma factor RpoS|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.601.10|MF_00959|PF00140|PF04539|PF04542|PF04545|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02394|TIGR02937 NJ56_RS02290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011055|IPR016047|IPR018392 Duplicated hybrid motif|LysM domain|Peptidase M23 G3DSA:2.70.70.10|G3DSA:3.10.350.10|PF01476|PF01551|SM00257|SSF51261 NJ56_RS02295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000682|IPR029063 Protein-L-isoaspartate(D-aspartate) O-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0004719|GO:0006464 G3DSA:3.40.50.150|MF_00090|PF01135|PS01279|SSF53335|TIGR00080 NJ56_RS02300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002828|IPR030048 Survival protein SurE|Survival protein SurE-like phosphatase/nucleotidase GO:0008252|GO:0016787 G3DSA:3.40.1210.10|MF_00060|PF01975|SSF64167|TIGR00087 NJ56_RS02305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001656|IPR020103|IPR020119 Pseudouridine synthase TruD, conserved site|Pseudouridine synthase, TruD|Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.2340.10|MF_01082|PF01142|PS01268|SSF55120|TIGR00094 NJ56_RS02310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003526|IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase|2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685|GO:0016114 G3DSA:3.30.1330.50|MF_00107|PF02542|PS01350|SSF69765|TIGR00151 NJ56_RS02315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001228|IPR018294|IPR029044|IPR034683 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site|Cytidylyltransferase IspD/TarI|Nucleotide-diphospho-sugar transferases GO:0003824|GO:0008299|GO:0050518|GO:0070567 G3DSA:3.90.550.10|MF_00108|PF01128|PS01295|SSF53448|TIGR00453 NJ56_RS02320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007060|IPR023081 Cell division protein FtsB|Septum formation initiator FtsL/DivIC GO:0007049 MF_00599|PF04977 NJ56_RS02325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022721 Protein of unknown function DUF3561 PD070788|PF12084 NJ56_RS02330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002891|IPR027417 Adenylyl-sulfate kinase|P-loop containing nucleoside triphosphate hydrolase GO:0000103|GO:0004020|GO:0005524 G3DSA:3.40.50.300|MF_00065|PF01583|SSF52540|TIGR00455 NJ56_RS02335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000795|IPR005225|IPR009000|IPR009001|IPR011779|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Sulphate adenylyltransferase, large subunit|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation protein, beta-barrel domain GO:0003924|GO:0005525|GO:0006790 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00062|PF00009|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR02034 NJ56_RS02340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002500|IPR011784|IPR014729 Phosphoadenosine phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold|Sulphate adenylyltransferase, small subunit GO:0003824|GO:0004781|GO:0008152|GO:0019419 G3DSA:3.40.50.620|MF_00064|PF01507|PIRSF002936|SSF52402|TIGR02039 NJ56_RS02345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000878|IPR003043|IPR006366|IPR006367|IPR012409|IPR014776|IPR014777|IPR016040|IPR019478|IPR028281 NAD(P)-binding domain|Sirohaem synthase|Sirohaem synthase, N-terminal|Sirohaem synthase, dimerisation domain|Siroheme synthase, central domain|Tetrapyrrole methylase|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|Uroporphiryn-III C-methyltransferase, conserved site|Uroporphyrin-III C-methyltransferase GO:0004851|GO:0006779|GO:0008152|GO:0008168|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 G3DSA:1.10.8.210|G3DSA:3.30.160.110|G3DSA:3.30.950.10|G3DSA:3.40.1010.10|G3DSA:3.40.50.720|MF_01646|PF00590|PF10414|PF13241|PF14824|PIRSF036426|PS00839|PS00840|SSF51735|SSF53790|SSF75615|TIGR01469|TIGR01470 NJ56_RS02350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007484 Peptidase M28 G3DSA:3.40.630.10|PF04389|SSF53187 NJ56_RS02360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013321|IPR031807|IPR035069 Arc-type ribbon-helix-helix|HicB-like antitoxin of toxin-antitoxin system|TTHA1013/TTHA0281-like GO:0006355 G3DSA:1.10.1220.10|G3DSA:3.30.2390.10|PF15919|SSF143100 NJ56_RS02365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002500|IPR004511|IPR011800|IPR014729 Phosphoadenosine phosphosulphate reductase|Phosphoadenosine phosphosulphate reductase CysH|Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0004604|GO:0008152|GO:0019379|GO:0055114 G3DSA:3.40.50.620|MF_00063|PF01507|PIRSF000857|SSF52402|TIGR00434|TIGR02057 NJ56_RS02370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005117|IPR006066|IPR006067|IPR011786 Nitrite/Sulfite reductase ferredoxin-like domain|Nitrite/sulphite reductase 4Fe-4S domain|Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site|Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0016491|GO:0020037|GO:0050661|GO:0051536|GO:0051539|GO:0055114 G3DSA:3.30.413.10|MF_01540|PF01077|PF03460|PR00397|PS00365|SSF55124|SSF56014|TIGR02041 NJ56_RS02375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001094|IPR001433|IPR001709|IPR003097|IPR008254|IPR010199|IPR017938|IPR029039|IPR029758 FAD-binding, type 1|Flavodoxin-like|Flavodoxin/nitric oxide synthase|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein-like domain|Oxidoreductase FAD/NAD(P)-binding|Riboflavin synthase-like beta-barrel|Sulphite reductase [NADPH] flavoprotein, alpha chain|Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0016491|GO:0019344|GO:0050660|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.360|G3DSA:3.40.50.80|MF_01541|PF00175|PF00258|PF00667|PIRSF000207|PR00369|PR00371|SSF52218|SSF52343|SSF63380|TIGR01931 NJ56_RS02380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein G3DSA:3.30.479.10|PF01242|PIRSF006113|SSF55620|TIGR03367 NJ56_RS02385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007197|IPR013785|IPR024924|IPR027609 7-carboxy-7-deazaguanine synthase-like|Aldolase-type TIM barrel|Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria|Radical SAM GO:0003824|GO:0051536 G3DSA:3.20.20.70|MF_00917|PF04055|PF13394|PIRSF000370|SSF102114|TIGR04322 NJ56_RS02390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000941|IPR020809|IPR020810|IPR020811|IPR029017|IPR029065 Enolase|Enolase C-terminal domain-like|Enolase N-terminal domain-like|Enolase, C-terminal TIM barrel domain|Enolase, N-terminal|Enolase, conserved site GO:0000015|GO:0000287|GO:0004634|GO:0006096 G3DSA:3.20.20.120|G3DSA:3.30.390.10|MF_00318|PF00113|PF03952|PIRSF001400|PR00148|PS00164|SM01192|SM01193|SSF51604|SSF54826|TIGR01060 NJ56_RS02395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004468|IPR017456|IPR017926|IPR027417|IPR029062 CTP synthase|CTP synthase, N-terminal|Class I glutamine amidotransferase-like|Glutamine amidotransferase|P-loop containing nucleoside triphosphate hydrolase GO:0003883|GO:0006221 G3DSA:3.40.50.300|G3DSA:3.40.50.880|MF_01227|PF00117|PF06418|SSF52317|SSF52540|TIGR00337 NJ56_RS02400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004518|IPR011551 NTP pyrophosphohydrolase MazG|NTP pyrophosphohydrolase MazG, putative catalytic core G3DSA:1.10.287.1080|PF03819|SSF101386|TIGR00444 NJ56_RS02405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676 ACT domain|Beta-grasp domain|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like GO:0015969 G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691 NJ56_RS02410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001566|IPR002792|IPR010280|IPR012340|IPR029063|IPR030390|IPR030391 (Uracil-5)-methyltransferase family|23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD|Nucleic acid-binding, OB-fold|RNA methyltransferase TrmA, active site|RNA methyltransferase TrmA, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|TRAM domain GO:0003723|GO:0006396|GO:0008173 G3DSA:2.40.50.140|G3DSA:3.40.50.150|MF_01010|PF01938|PF05958|PS01230|PS01231|SSF50249|SSF53335|TIGR00479 NJ56_RS02415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR003594|IPR003660|IPR003661|IPR004358|IPR008207|IPR011006|IPR019247 CheY-like superfamily|HAMP domain|Histidine kinase BarA, N-terminal|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.120.160|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF00512|PF01627|PF02518|PF09984|PR00344|SM00073|SM00304|SM00387|SM00388|SM00448|SSF158472|SSF47226|SSF47384|SSF52172|SSF55874 NJ56_RS02420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001478|IPR001940|IPR009003|IPR011782 PDZ domain|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.10|PF00595|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02037 NJ56_RS02425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003607|IPR006261|IPR006674|IPR020779|IPR023293|IPR026875 Deoxyguanosinetriphosphate triphosphohydrolase, central domain|HD domain|HD/PDEase domain|Phosphohydrolase-associated domain|dNTP triphosphohydrolase|dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832|GO:0016793 G3DSA:1.10.3210.10|G3DSA:1.10.3410.10|MF_00030|PF01966|PF13286|SM00471|SSF109604|TIGR01353 NJ56_RS02430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000845|IPR010049 MTA/SAH nucleosidase|Nucleoside phosphorylase domain GO:0003824|GO:0008782|GO:0008930|GO:0009116|GO:0009164|GO:0019509 G3DSA:3.40.50.1580|MF_01684|PF01048|SSF53167|TIGR01704 NJ56_RS02435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002491|IPR023544 ABC transporter periplasmic binding domain|ABC transporter, vitamin B12-binding protein GO:0005488|GO:0015889|GO:0031419|GO:0042597 G3DSA:3.40.50.1980|MF_01000|PF01497|SSF53807 NJ56_RS02440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005115 Uncharacterised domain UPF0126 PF03458 NJ56_RS02445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000361|IPR016092|IPR017870|IPR023063 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion protein ErpA|FeS cluster insertion, C-terminal, conserved site GO:0005198|GO:0051536|GO:0097428 G3DSA:2.60.300.12|MF_01380|PF01521|PS01152|SSF89360|TIGR00049 NJ56_RS02450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001807|IPR014743 Chloride channel, core|Chloride channel, voltage gated GO:0005216|GO:0005247|GO:0006821|GO:0016020|GO:0055085 G3DSA:1.10.3080.10|PF00654|PR00762|SSF81340 NJ56_RS02455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004639|IPR005814|IPR015421|IPR015422|IPR015424 Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0003824|GO:0008483|GO:0030170|GO:0033014|GO:0042286 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00375|PF00202|PS00600|SSF53383|TIGR00713 NJ56_RS02460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001264|IPR001460|IPR011813|IPR012338|IPR023346|IPR028166|IPR032730 Beta-lactamase/transpeptidase-like|Bifunctional transglycosylase second domain|Glycosyl transferase, family 51|Lysozyme-like domain|Penicillin-binding protein 1B|Penicillin-binding protein, transpeptidase|Transglycosylase PBP1b, N-terminal transmembrane domain GO:0008233|GO:0008658|GO:0008955|GO:0009252|GO:0009274|GO:0046677 G3DSA:1.10.3810.10|G3DSA:1.20.5.100|G3DSA:3.30.2060.10|G3DSA:3.40.710.10|PF00905|PF00912|PF14812|PF14814|PIRSF002799|SSF53955|SSF56601|TIGR02071 NJ56_RS02465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001650|IPR007502|IPR010225|IPR011545|IPR013689|IPR014001|IPR027417 ATP-dependent RNA helicase HrpB, C-terminal|ATP-dependent helicase HrpB|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase-associated domain|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0004386|GO:0005524|GO:0008026 G3DSA:3.40.50.300|PF00270|PF00271|PF04408|PF08482|PIRSF005496|SM00487|SM00490|SM00847|SSF52540|TIGR01970 NJ56_RS02470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004175|IPR009097 Cyclic phosphodiesterase|RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 G3DSA:3.90.1140.10|MF_01940|PF13563|SSF55144|TIGR02258 NJ56_RS02475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005224 Sugar fermentation stimulation protein MF_00095|PF03749|TIGR00230 NJ56_RS02485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000962|IPR012784|IPR020458|IPR020460 RNA polymerase-binding transcription factor DksA|Zinc finger, DksA/TraR C4-type|Zinc finger, DksA/TraR C4-type conserved site|Zinc finger, DksA/TraR C4-type, bacteria GO:0008270 MF_00926|PF01258|PR00618|PS01102|SSF109635|SSF57716|TIGR02420 NJ56_RS02490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000924|IPR014729|IPR020058|IPR022380 Glutamyl-Q tRNA(Asp) synthetase|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0005524|GO:0005737|GO:0006400|GO:0016876|GO:0043039 G3DSA:3.40.50.620|MF_01428|PF00749|PR00987|SSF52374|TIGR03838 NJ56_RS02495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002646|IPR010206|IPR025866|IPR032828 Poly A polymerase, head domain|Poly(A) polymerase I|Polymerase A arginine-rich C-terminal domain|tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain GO:0003723|GO:0004652|GO:0006378|GO:0006396|GO:0016779 G3DSA:1.10.3090.10|G3DSA:3.30.460.10|MF_00957|PF01743|PF12626|PF12627|SSF81301|SSF81891|TIGR01942 NJ56_RS02500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 G3DSA:3.30.70.560|PF01288|PS00794|SSF55083|TIGR01498 NJ56_RS02505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003700|IPR015813 Ketopantoate hydroxymethyltransferase|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824|GO:0003864|GO:0015940 G3DSA:3.20.20.60|MF_00156|PF02548|PIRSF000388|SSF51621|TIGR00222 NJ56_RS02510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003721|IPR004821|IPR014729 Cytidyltransferase-like domain|Pantoate-beta-alanine ligase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0004592|GO:0009058|GO:0015940 G3DSA:3.30.1300.10|G3DSA:3.40.50.620|MF_00158|PF02569|SSF52374|TIGR00018|TIGR00125 NJ56_RS02515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003190|IPR009010 Aspartate decarboxylase|Aspartate decarboxylase-like domain GO:0004068|GO:0006523 G3DSA:2.40.40.20|MF_00446|PD009294|PF02261|PIRSF006246|SSF50692|TIGR00223 NJ56_RS02520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002509|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain GO:0003824|GO:0005975|GO:0016810 G3DSA:2.40.50.110|G3DSA:3.20.20.370|PF01522|SSF88713 NJ56_RS02525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000412|IPR013525 ABC-2 transporter|ABC-2 type transporter GO:0006810|GO:0016020 PF01061|PIRSF006648|PR00164 NJ56_RS02530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS02535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001765|IPR015892 Carbonic anhydrase|Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 G3DSA:3.40.1050.10|PF00484|PS00704|PS00705|SM00947|SSF53056 NJ56_RS02540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000836|IPR005904|IPR029057 Hypoxanthine phosphoribosyl transferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0004422|GO:0005737|GO:0006166|GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271|TIGR01203 NJ56_RS02545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001117|IPR002355|IPR008972|IPR011706|IPR011707 Cupredoxin|Multicopper oxidase, copper-binding site|Multicopper oxidase, type 1|Multicopper oxidase, type 2|Multicopper oxidase, type 3 GO:0005507|GO:0016491|GO:0055114 G3DSA:2.60.40.420|PF00394|PF07731|PF07732|PS00080|SSF49503 NJ56_RS02550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019114 Chaperone lipoprotein, PulS/OutS-like PD074041|PF09691 NJ56_RS02555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001045|IPR029063|IPR030373|IPR035246 Polyamine biosynthesis domain, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|Spermidine synthase, tetramerisation domain|Spermidine/spermine synthases GO:0003824 G3DSA:2.30.140.10|G3DSA:3.40.50.150|MF_00198|PF01564|PF17284|PS01330|SSF53335|TIGR00417 NJ56_RS02560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003826|IPR009165|IPR016067 S-adenosylmethionine decarboxylase family, prokaryotic|S-adenosylmethionine decarboxylase, bacterial|S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 G3DSA:3.60.90.10|MF_00465|PF02675|PIRSF001356|SSF56276|TIGR03331 NJ56_RS02565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS02570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008249 Uncharacterised protein family UPF0231 MF_01053|PD020773|PF06062|PIRSF006287 NJ56_RS02575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001030|IPR004406|IPR015928|IPR015929|IPR015931|IPR015932|IPR015933|IPR018136 Aconitase B|Aconitase B, HEAT-like domain|Aconitase B, swivel|Aconitase family, 4Fe-4S cluster binding site|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/3-isopropylmalate dehydratase, swivel GO:0003994|GO:0005829|GO:0006099|GO:0008152|GO:0051539 G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF06434|PF11791|PIRSF036687|PS00450|PS01244|SSF52016|SSF53732|SSF74778|TIGR00117 NJ56_RS02580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003540 ADP ribosyltransferase GO:0005576|GO:0009405 G3DSA:3.90.176.10|PF03496|SSF56399 NJ56_RS02585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004099|IPR006258|IPR012999|IPR016156|IPR023753 Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0004148|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|SSF51905|SSF55424|TIGR01350 NJ56_RS02590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR006256|IPR011053 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex|E3-binding domain|Single hybrid motif GO:0004742|GO:0006096|GO:0008152|GO:0016746|GO:0045254 G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:3.90.1170.30|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777|TIGR01348 NJ56_RS02595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004660|IPR005474|IPR009014|IPR029061 2-oxo-acid dehydrogenase E1 component homodimeric type|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, N-terminal GO:0003824|GO:0008152|GO:0016491|GO:0055114 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PIRSF000156|SSF52518|SSF52922|TIGR00759 NJ56_RS02600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000524|IPR008920|IPR011711|IPR011991 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 NJ56_RS02610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0003333|GO:0006810|GO:0006865|GO:0015171|GO:0016020|GO:0016021|GO:0055085 PF00324|PIRSF006060|PS00218 NJ56_RS02615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031347 Protein AmpE PF17113 NJ56_RS02620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 G3DSA:3.40.80.10|PF01510|SM00644|SSF55846 NJ56_RS02625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002638|IPR004393|IPR013785|IPR022412|IPR027277 Aldolase-type TIM barrel|Nicotinate-nucleotide pyrophosphorylase|Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD|Quinolinate phosphoribosyl transferase, C-terminal|Quinolinate phosphoribosyl transferase, N-terminal GO:0003824|GO:0004514|GO:0009435|GO:0016763|GO:0019363 G3DSA:3.20.20.70|G3DSA:3.90.1170.20|PF01729|PF02749|PIRSF006250|SSF51690|SSF54675|TIGR00078 NJ56_RS02630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012902 Prokaryotic N-terminal methylation site G3DSA:3.30.700.10|PF07963|PS00409|SSF54523|TIGR02532 NJ56_RS02635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001482|IPR007831|IPR027417 General secretory system II, protein E, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system protein E GO:0005524|GO:0006810 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PF05157|PS00662|SSF160246|SSF52540 NJ56_RS02640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003004|IPR018076 GspF/PilC family|Type II secretion system F domain G3DSA:1.20.1250.20|PF00482|PR00812 NJ56_RS02645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001093|IPR005993|IPR013785|IPR015875 Aldolase-type TIM barrel|GMP reductase|IMP dehydrogenase / GMP reductase, conserved site|IMP dehydrogenase/GMP reductase GO:0003824|GO:0003920|GO:0009117|GO:0016491|GO:0055114|GO:1902560 G3DSA:3.20.20.70|MF_00596|PF00478|PIRSF000235|PS00487|SM01240|SSF51412|TIGR01305 NJ56_RS02650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001977|IPR027417 Dephospho-CoA kinase|P-loop containing nucleoside triphosphate hydrolase GO:0004140|GO:0005524|GO:0015937 G3DSA:3.40.50.300|MF_00376|PF01121|SSF52540|TIGR00152 NJ56_RS02655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009777|IPR027462 Cell division protein ZapD|Z ring-associated protein D, C-terminal domain G3DSA:1.10.3900.10|G3DSA:2.60.440.10|MF_01092|PF07072|SSF160950 NJ56_RS02660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005584|IPR013088 DNA gyrase inhibitor YacG|Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 G3DSA:3.30.50.10|MF_00649|PF03884|SSF57716 NJ56_RS02665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR003561|IPR015797|IPR020084|IPR020476 Mutator MutT|NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site GO:0006281|GO:0008413|GO:0016787 G3DSA:3.90.79.10|PF00293|PR00502|PR01401|PS00893|SSF55811|TIGR00586 NJ56_RS02670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000185|IPR004027|IPR011115|IPR011116|IPR011130|IPR020937|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Protein translocase subunit SecA|SEC-C motif|SecA DEAD-like, N-terminal|SecA Wing/Scaffold|SecA conserved site|SecA preprotein, cross-linking domain GO:0005524|GO:0006605|GO:0006886|GO:0016020|GO:0017038 G3DSA:1.10.3060.10|G3DSA:3.10.450.50|G3DSA:3.40.50.300|MF_01382|PF01043|PF02810|PF07516|PF07517|PR00906|PS01312|SM00957|SM00958|SSF52540|SSF81767|SSF81886|TIGR00963 NJ56_RS02675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009502 Secretion monitor GO:0045182 MF_01332|PD089227|PF06558|PIRSF004572 NJ56_RS02680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007922 Protein of unknown function DUF721/UPF0232 PF05258 NJ56_RS02685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004463|IPR011334|IPR015870|IPR020568 Ribosomal protein S5 domain 2-type fold|UDP-3-O-acyl N-acetylglucosamine deacetylase|UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal|UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 G3DSA:3.30.1700.10|G3DSA:3.30.230.20|MF_00388|PF03331|SSF54211|TIGR00325 NJ56_RS02690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000158|IPR003008|IPR008280|IPR018316|IPR020805|IPR024757 Cell division protein FtsZ|Cell division protein FtsZ, C-terminal|Cell division protein FtsZ, conserved site|Tubulin/FtsZ, 2-layer sandwich domain|Tubulin/FtsZ, C-terminal|Tubulin/FtsZ, GTPase domain GO:0003924|GO:0005525|GO:0005737 G3DSA:3.30.1330.20|G3DSA:3.40.50.1440|MF_00909|PF00091|PF12327|PR00423|PS01134|PS01135|SM00864|SM00865|SSF52490|SSF55307|TIGR00065 NJ56_RS02695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003494|IPR020823 Cell division protein FtsA|SHS2 domain inserted in FtsA GO:0005515|GO:0007049 G3DSA:3.30.420.40|MF_02033|PF02491|PF14450|PIRSF003101|SM00842|SSF53067|TIGR01174 NJ56_RS02700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005548|IPR013685|IPR026579 Cell division protein FtsQ|Cell division protein FtsQ/DivIB|POTRA domain, FtsQ-type GO:0090529 MF_00911|PF03799|PF08478 NJ56_RS02705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000291|IPR005905|IPR011095|IPR011127|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|D-alanine--D-alanine ligase|D-alanine--D-alanine ligase, C-terminal|D-alanine--D-alanine ligase, N-terminal domain|D-alanine--D-alanine ligase/VANA/B/C, conserved site|Pre-ATP-grasp domain GO:0003824|GO:0005524|GO:0005737|GO:0008716 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00047|PF01820|PF07478|PIRSF039102|PS00843|PS00844|SSF52440|SSF56059|TIGR01205 NJ56_RS02710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000713|IPR004101|IPR005758|IPR013221 Mur ligase, C-terminal|Mur ligase, N-terminal catalytic domain|Mur ligase, central|UDP-N-acetylmuramate--L-alanine ligase GO:0005524|GO:0008763|GO:0009058|GO:0009252|GO:0016874 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00046|PF01225|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01082 NJ56_RS02715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004276|IPR006009|IPR007235 Glycosyl transferase, family 28, C-terminal|Glycosyltransferase family 28, N-terminal domain|N-acetylglucosaminyltransferase, MurG GO:0005975|GO:0009252|GO:0016758|GO:0030259|GO:0050511 G3DSA:3.40.50.2000|MF_00033|PF03033|PF04101|SSF53756|TIGR01133 NJ56_RS02720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001182|IPR013437|IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site|Cell division protein FtsW|Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0007049|GO:0009252|GO:0016021|GO:0051301 MF_00913|PF01098|PS00428|TIGR02614 NJ56_RS02725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004101|IPR005762|IPR013221 Mur ligase, C-terminal|Mur ligase, central|UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0009058|GO:0016874|GO:0051301 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00639|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01087 NJ56_RS02730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000715|IPR003524|IPR018480 Glycosyl transferase, family 4|Phospho-N-acetylmuramoyl-pentapeptide transferase|Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site GO:0008963|GO:0016020|GO:0016021 MF_00038|PF00953|PF10555|PS01347|PS01348|TIGR00445 NJ56_RS02735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000713|IPR004101|IPR005863|IPR013221 Mur ligase, C-terminal|Mur ligase, N-terminal catalytic domain|Mur ligase, central|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0009058|GO:0016874|GO:0047480|GO:0071555 G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_02019|PF01225|PF02875|PF08245|SSF53244|SSF53623|SSF63418|TIGR01143 NJ56_RS02740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000713|IPR004101|IPR005761|IPR013221 Mur ligase, C-terminal|Mur ligase, N-terminal catalytic domain|Mur ligase, central|UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0009058|GO:0016874|GO:0016881|GO:0051301 G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_00208|PF01225|PF02875|PF08245|SSF53244|SSF53623|SSF63418|TIGR01085 NJ56_RS02745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001460|IPR005311|IPR012338 Beta-lactamase/transpeptidase-like|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, transpeptidase GO:0008658 G3DSA:3.40.710.10|G3DSA:3.90.1310.10|PF00905|PF03717|SSF56519|SSF56601 NJ56_RS02750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 MF_00910|PF04999|TIGR02209 NJ56_RS02755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002903|IPR023397|IPR029063 Ribosomal RNA small subunit methyltransferase H|S-adenosyl-L-methionine-dependent methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 G3DSA:1.10.150.170|MF_01007|PF01795|PIRSF004486|SSF53335|SSF81799|TIGR00006 NJ56_RS02760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003444|IPR020603 MraZ domain|Transcriptional regulator MraZ GO:0003700|GO:0006355 G3DSA:2.10.260.10|MF_01008|PD006745|PF02381|SSF89447|TIGR00242 NJ56_RS02765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 MF_00914|PD090021|PF06610 NJ56_RS02770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001959|IPR010095|IPR021027 Probable transposase, IS891/IS1136/IS1341|Transposase IS605, OrfB, C-terminal|Transposase, putative, helix-turn-helix domain PF01385|PF07282|PF12323|TIGR01766 NJ56_RS02775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 G3DSA:3.30.70.1290|PF01797|SM01321|SSF143422 NJ56_RS02780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR001761|IPR010982|IPR012781|IPR028082 D-fructose-responsive transcription factor|LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I|Periplasmic binding protein/LacI sugar binding domain GO:0003677|GO:0006355|GO:0009750 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF00532|PS00356|SM00354|SSF47413|SSF53822|TIGR02417 NJ56_RS02785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002912|IPR004789|IPR019455 ACT domain|Acetolactate synthase, small subunit|Acetolactate synthase, small subunit, C-terminal GO:0003984|GO:0009082 G3DSA:3.30.70.1150|G3DSA:3.30.70.260|PD002844|PF01842|PF10369|SSF55021|TIGR00119 NJ56_RS02790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000399|IPR011766|IPR012000|IPR012001|IPR012846|IPR029035|IPR029061 Acetolactate synthase, large subunit, biosynthetic|DHS-like NAD/FAD-binding domain|TPP-binding enzyme, conserved site|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0003984|GO:0009082|GO:0030976|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|PS00187|SSF52467|SSF52518|TIGR00118 NJ56_RS02795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR020845 AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824|GO:0008152 G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PS00455|SSF56801 NJ56_RS02800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS02805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000891|IPR002034|IPR005671|IPR013709|IPR013785 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain|2-isopropylmalate synthase, bacterial-type|Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase GO:0003824|GO:0003852|GO:0009098|GO:0019752|GO:0046912 G3DSA:3.20.20.70|MF_01025|PF00682|PF08502|PS00815|PS00816|SM00917|SSF110921|SSF51569|TIGR00973 NJ56_RS02810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004429|IPR019818|IPR024084 Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase|Isopropylmalate dehydrogenase-like domain GO:0000287|GO:0003862|GO:0005737|GO:0009098|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|MF_01033|PF00180|PS00470|SM01329|SSF53659|TIGR00169 NJ56_RS02815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001030|IPR004430|IPR015931|IPR015932|IPR018136 3-isopropylmalate dehydratase, large subunit|Aconitase family, 4Fe-4S cluster binding site|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0003861|GO:0008152|GO:0009098|GO:0051539 G3DSA:3.30.499.10|G3DSA:3.40.1060.10|MF_01026|PF00330|PR00415|PS00450|PS01244|SSF53732|TIGR00170 NJ56_RS02820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000573|IPR004431|IPR015928 3-isopropylmalate dehydratase, small subunit|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel GO:0003861|GO:0008152|GO:0009098|GO:0009316 G3DSA:3.20.19.10|MF_01031|PF00694|SSF52016|TIGR00171 NJ56_RS02825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS02830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325 PF15894 NJ56_RS02835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000914|IPR011991|IPR023767|IPR025370 Solute-binding protein family 5 domain|Transcriptional regulator SgrR|Transcriptional regulator SgrR, N-terminal HTH domain|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|MF_01449|PF00496|PF12793|SSF46785|SSF53850 NJ56_RS02840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005948|IPR005967|IPR006059 Solute-binding family 1|Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria|Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0006810|GO:0015888|GO:0030288|GO:0030975 G3DSA:3.40.190.10|PF01547|SSF53850|TIGR01254|TIGR01276 NJ56_RS02845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR005947 ABC transporter type 1, transmembrane domain MetI-like|Thiamine ABC transporter, permease protein GO:0005215|GO:0006810|GO:0015888|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01253 NJ56_RS02850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR005968|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0042626 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR01277 NJ56_RS02855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032816 SNARE associated Golgi protein PF09335 NJ56_RS02860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006133|IPR006134|IPR006172|IPR012337|IPR017964|IPR023211 DNA polymerase, palm domain|DNA-directed DNA polymerase, family B|DNA-directed DNA polymerase, family B, conserved site|DNA-directed DNA polymerase, family B, exonuclease domain|DNA-directed DNA polymerase, family B, multifunctional domain|Ribonuclease H-like domain GO:0000166|GO:0003676|GO:0003677|GO:0003887|GO:0008408 G3DSA:3.30.420.10|G3DSA:3.90.1600.10|PF00136|PF03104|PR00106|PS00116|SM00486|SSF53098|SSF56672 NJ56_RS02865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000330|IPR001650|IPR014001|IPR022737|IPR023949|IPR027417 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase recycling, bacterial, C-terminal|RNA polymerase-associated protein RapA|SNF2-related, N-terminal domain GO:0005524|GO:0006355|GO:0016817 G3DSA:3.40.50.10810|G3DSA:3.40.50.300|MF_01821|PF00176|PF00271|PF12137|SM00487|SM00490|SSF52540 NJ56_RS02870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006145|IPR006224|IPR020103 Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|PF00849|PS01129|SSF55120 NJ56_RS02875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001623|IPR007791|IPR023749|IPR029024 Co-chaperone DjlA|Co-chaperone DjlA, N-terminal|DnaJ domain|TerB-like GO:0051087 G3DSA:1.10.287.110|G3DSA:1.10.3680.10|MF_01153|PF00226|PF05099|PR00625|SM00271|SSF46565 NJ56_RS02880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005653|IPR007543|IPR020889 LPS-assembly protein LptD|Organic solvent tolerance protein, C-terminal|Organic solvent tolerance-like, N-terminal GO:0009279|GO:0010033|GO:0015920|GO:0019867|GO:0043165|GO:0061024 G3DSA:2.60.450.10|MF_01411|PF03968|PF04453 NJ56_RS02885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000297|IPR015391|IPR023034|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|Peptidyl-prolyl isomerase SurA|SurA N-terminal|Trigger factor/SurA domain GO:0003755|GO:0006457|GO:0016853|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 G3DSA:1.10.4030.10|G3DSA:3.10.50.40|MF_01183|PF00639|PF09312|SSF109998|SSF54534 NJ56_RS02890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005255 PdxA family GO:0051287|GO:0055114 G3DSA:3.40.718.10|MF_00536|PF04166|SSF53659|TIGR00557 NJ56_RS02895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001737|IPR011530|IPR020596|IPR020598|IPR023165|IPR029063 Ribosomal RNA adenine dimethylase|Ribosomal RNA adenine methylase transferase, N-terminal|Ribosomal RNA adenine methylase transferase, conserved site|Ribosomal RNA adenine methyltransferase KsgA/Erm|S-adenosyl-L-methionine-dependent methyltransferase|rRNA adenine dimethylase-like GO:0000154|GO:0000179|GO:0006364|GO:0008649 G3DSA:1.10.8.100|G3DSA:3.40.50.150|MF_00607|PF00398|PS01131|SM00650|SSF53335|TIGR00755 NJ56_RS02900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007474|IPR023065 ApaG domain|Uncharacterised protein family ApaG G3DSA:2.60.40.1470|MF_00791|PF04379|SSF110069 NJ56_RS02905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004617|IPR004843|IPR029052 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)|Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0008803|GO:0016787 G3DSA:3.60.21.10|MF_00199|PF00149|PIRSF000903|SSF56300|TIGR00668 NJ56_RS02910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022231 Protein of unknown function DUF3757 PF12582 NJ56_RS02915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001796|IPR012259|IPR017925|IPR024072 Dihydrofolate reductase|Dihydrofolate reductase conserved site|Dihydrofolate reductase domain|Dihydrofolate reductase-like domain GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 G3DSA:3.40.430.10|PF00186|PIRSF000194|PR00070|PS00075|SSF53597 NJ56_RS02920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020914|IPR024528 Threonine/Serine exporter, ThrE|Uncharacterised protein family UPF0442 MF_01191|PF12821 NJ56_RS02925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010619 Putative threonine/serine exporter PF06738 NJ56_RS02930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 NJ56_RS02935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005479|IPR005480|IPR005483|IPR006275|IPR011607|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|Carbamoyl-phosphate synthase large subunit, CPSase domain|Carbamoyl-phosphate synthase, large subunit|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Carbamoyl-phosphate synthetase, large subunit oligomerisation domain|Methylglyoxal synthase-like domain|Pre-ATP-grasp domain GO:0003824|GO:0005524|GO:0006807 G3DSA:1.10.1030.10|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.1380|G3DSA:3.40.50.20|MF_01210_A|MF_01210_B|PF02142|PF02786|PF02787|PR00098|PS00866|PS00867|SM00851|SM01096|SSF48108|SSF52335|SSF52440|SSF56059|TIGR01369 NJ56_RS02940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002474|IPR006274|IPR017926|IPR029062 Carbamoyl-phosphate synthase small subunit, N-terminal domain|Carbamoyl-phosphate synthase, small subunit|Class I glutamine amidotransferase-like|Glutamine amidotransferase GO:0004088|GO:0006207|GO:0006541 G3DSA:3.40.50.880|G3DSA:3.50.30.20|MF_01209|PF00117|PF00988|PR00096|PR00097|PR00099|SM01097|SSF52021|SSF52317|TIGR01368 NJ56_RS02945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000846|IPR016040|IPR022663|IPR022664|IPR023940 Dihydrodipicolinate reductase|Dihydrodipicolinate reductase, C-terminal|Dihydrodipicolinate reductase, N-terminal|Dihydrodipicolinate reductase, conserved site|NAD(P)-binding domain GO:0008839|GO:0009089|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_00102|PF01113|PF05173|PIRSF000161|PS01298|SSF51735|SSF55347|TIGR00036 NJ56_RS02950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 G3DSA:3.40.50.2300|MF_00191|PF02401|TIGR00216 NJ56_RS02955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain G3DSA:3.10.50.40|PF00254|SSF54534 NJ56_RS02960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MF_00161|PF01252|PR00781|PS00855|TIGR00077 NJ56_RS02965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001412|IPR002300|IPR002301|IPR009008|IPR009080|IPR010663|IPR013155|IPR014729|IPR023585 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Isoleucine-tRNA ligase|Isoleucine-tRNA ligase, type 1|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain|Zinc finger, FPG/IleRS-type GO:0000166|GO:0002161|GO:0004812|GO:0004822|GO:0005524|GO:0005737|GO:0006418|GO:0006428 G3DSA:1.10.730.10|G3DSA:3.30.2320.20|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02002|PF00133|PF06827|PF08264|PR00984|PS00178|SSF47323|SSF50677|SSF52374|TIGR00392 NJ56_RS02970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002606|IPR004821|IPR014729|IPR015864|IPR015865|IPR023465 Cytidyltransferase-like domain|FAD synthetase|Riboflavin kinase domain|Riboflavin kinase domain, bacterial/eukaryotic|Riboflavin kinase, bacterial|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0003919|GO:0008531|GO:0009058|GO:0009231 G3DSA:2.40.30.30|G3DSA:3.40.50.620|PF01687|PF06574|PIRSF004491|SM00904|SSF52374|SSF82114|TIGR00083|TIGR00125 NJ56_RS02980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.58.110|MF_00500|PD004231|PF01649|SSF46992|TIGR00029 NJ56_RS02985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS02990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004670|IPR023171 Na+/H+ antiporter NhaA|Na/H antiporter domain GO:0006814|GO:0006885|GO:0016021 G3DSA:1.20.1530.10|MF_01844|PF06965|TIGR00773 NJ56_RS02995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001305|IPR001623|IPR002939|IPR008971|IPR012724|IPR018253 Chaperone DnaJ|Chaperone DnaJ, C-terminal|DnaJ domain|DnaJ domain, conserved site|HSP40/DnaJ peptide-binding|Heat shock protein DnaJ, cysteine-rich domain GO:0005524|GO:0006457|GO:0009408|GO:0031072|GO:0051082 G3DSA:1.10.287.110|G3DSA:2.10.230.10|G3DSA:2.60.260.20|MF_01152|PF00226|PF00684|PF01556|PR00625|PS00636|SM00271|SSF46565|SSF49493|SSF57938|TIGR02349 NJ56_RS03000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012725|IPR013126|IPR018181|IPR029047|IPR029048 Chaperone DnaK|Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain|Heat shock protein 70kD, peptide-binding domain GO:0005524|GO:0006457|GO:0051082 G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.420.40|MF_00332|PF00012|PR00301|PS00297|PS00329|PS01036|SSF100920|SSF100934|SSF53067|TIGR02350 NJ56_RS03005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 PF01184 NJ56_RS03010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011024|IPR016181 Acyl-CoA N-acyltransferase|Gamma-crystallin-related G3DSA:2.60.20.10|G3DSA:3.40.630.30|SSF49695|SSF55729 NJ56_RS03015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS03020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001453|IPR008284 MoaB/Mog domain|Molybdenum cofactor biosynthesis, conserved site GO:0006777 G3DSA:3.40.980.10|PF00994|PS01078|SM00852|SSF53218|TIGR00177 NJ56_RS03025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001585|IPR004730|IPR013785|IPR018225 Aldolase-type TIM barrel|Transaldolase type 1|Transaldolase, active site|Transaldolase/Fructose-6-phosphate aldolase GO:0003824|GO:0004801|GO:0005737|GO:0005975|GO:0006098 G3DSA:3.20.20.70|MF_00492|PF00923|PS00958|PS01054|SSF51569|TIGR00874 NJ56_RS03030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005583 Peroxide stress protein YaaA MF_00652|PF03883 NJ56_RS03035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000634|IPR001926|IPR004450|IPR029144 Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Threonine synthase, N-terminal|Threonine synthase-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0006520|GO:0030170 G3DSA:3.40.50.1100|G3DSA:3.90.1380.10|PF00291|PF14821|PS00165|SSF53686|TIGR00260 NJ56_RS03040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000870|IPR006203|IPR006204|IPR013750|IPR014721|IPR020568 GHMP kinase N-terminal domain|GHMP kinase, ATP-binding, conserved site|GHMP kinase, C-terminal domain|Homoserine kinase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0004413|GO:0005524|GO:0006566 G3DSA:3.30.230.10|G3DSA:3.30.70.890|MF_00384|PF00288|PF08544|PIRSF000676|PR00958|PS00627|SSF54211|SSF55060|TIGR00191 NJ56_RS03045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001048|IPR001341|IPR001342|IPR002912|IPR005106|IPR011147|IPR016040|IPR018042|IPR019811|IPR027795 ACT domain|Aspartate kinase domain|Aspartate kinase, conserved site|Aspartate/glutamate/uridylate kinase|Aspartate/homoserine dehydrogenase, NAD-binding|Bifunctional aspartokinase/homoserine dehydrogenase I|GATS-like ACT domain|Homoserine dehydrogenase, catalytic|Homoserine dehydrogenase, conserved site|NAD(P)-binding domain GO:0004072|GO:0004412|GO:0006520|GO:0008652|GO:0009067|GO:0016491|GO:0050661|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.30.70.260|G3DSA:3.40.1160.10|G3DSA:3.40.50.720|PF00696|PF00742|PF01842|PF03447|PF13840|PIRSF000727|PS00324|PS01042|SSF51735|SSF53633|SSF55021|SSF55347|TIGR00657 NJ56_RS03050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 MF_01907|PF08254|TIGR02077 NJ56_RS03055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991|IPR016032 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 NJ56_RS03060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010292 Uncharacterised protein family CreA PF05981|PIRSF003174 NJ56_RS03065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR010499|IPR011256|IPR018060|IPR018062|IPR020449|IPR029442 Bacterial transcription activator, effector binding|DNA binding HTH domain, AraC-type|GyrI-like small molecule binding domain|HTH domain AraC-type, conserved site|Homeobox domain-like|Regulatory factor, effector binding domain|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:3.20.80.10|PF06445|PF12833|PR00032|PS00041|SM00342|SM00871|SSF46689|SSF55136 NJ56_RS03070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001345|IPR013078|IPR023086|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1|Phosphoglycerate mutase, GpmB, probable|Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0004619|GO:0006096|GO:0008152 G3DSA:3.40.50.1240|MF_01040|PF00300|PIRSF000709|PS00175|SM00855|SSF53254 NJ56_RS03075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002786|IPR026533|IPR029001 Inosine triphosphate pyrophosphatase-like|Non-canonical purine NTP phosphatase|Non-canonical purine NTP phosphatase/PRRC1 G3DSA:3.90.950.10|MF_00648|PF01931|SSF52972|TIGR00258 NJ56_RS03080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000831|IPR010921|IPR013335 Trp repressor|Trp repressor, bacterial|Trp repressor/replication initiator GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.1270.10|MF_00475|PD012582|PF01371|PIRSF003196|SSF48295|TIGR01321 NJ56_RS03085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000189|IPR008258|IPR012289|IPR016026|IPR023346 Lysozyme-like domain|Lytic transglycosylase, superhelical U-shaped and linker domain|Lytic transglycosylase, superhelical linker|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1 GO:0000270|GO:0004553|GO:0008933|GO:0016020|GO:0042597 G3DSA:1.10.1240.20|G3DSA:1.10.530.10|G3DSA:1.25.20.10|PF01464|PF14718|PS00922|SSF48435|SSF53955 NJ56_RS03090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001757|IPR004014|IPR006068|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299 Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD-like domain|P-type ATPase|P-type ATPase, transmembrane domain|P-type ATPase, A domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site GO:0000166|GO:0016021 G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00689|PF00690|PF00702|PR00119|PR00120|PS00154|SM00831|SSF56784|SSF81653|SSF81660|SSF81665|TIGR01494 NJ56_RS03095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR033417 Periplasmic sensor domain CHASE8 PF17152 NJ56_RS03105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR022374|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter, ATP-binding protein, ChvD|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12848|PS00211|SM00382|SSF52540|TIGR03719 NJ56_RS03110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR004821|IPR006417|IPR010982|IPR014729|IPR016429|IPR027417 Bifunctional transcriptional regulator NadR|Cro/C1-type helix-turn-helix domain|Cytidyltransferase-like domain|Lambda repressor-like, DNA-binding domain|Nicotinamide-nucleotide adenylyltransferase|P-loop containing nucleoside triphosphate hydrolase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003677|GO:0003824|GO:0006355|GO:0006810|GO:0009058|GO:0019363|GO:0043565|GO:0045892 G3DSA:1.10.260.40|G3DSA:3.40.50.300|G3DSA:3.40.50.620|PF01381|PF13521|PIRSF004776|SM00530|SSF47413|SSF52374|SSF52540|TIGR00125|TIGR01526 NJ56_RS03115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR004504|IPR014721|IPR020568|IPR027417 AAA+ ATPase domain|DNA repair protein RadA|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0003684|GO:0005524|GO:0006281 G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01498|PF13481|PF13541|PR01874|SM00382|SSF52540|SSF54211|TIGR00416 NJ56_RS03120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023190|IPR023214 HAD-like domain|Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 G3DSA:1.10.150.210|G3DSA:3.30.70.260|G3DSA:3.40.50.1000|PF12710|SSF56784|TIGR00338|TIGR01488 NJ56_RS03125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019305 Uncharacterised protein family Smp PF10144 NJ56_RS03130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000845|IPR004402|IPR018016 Nucleoside phosphorylase domain|Nucleoside phosphorylase, conserved site|Purine nucleoside phosphorylase DeoD-type GO:0003824|GO:0004731|GO:0006139|GO:0009116|GO:0016763 G3DSA:3.40.50.1580|MF_01627|PF01048|PS01232|SSF53167|TIGR00107 NJ56_RS03135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006124|IPR010045|IPR017849|IPR017850|IPR024052 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Metalloenzyme|Phosphopentomutase|Phosphopentomutase DeoB cap domain GO:0000287|GO:0003824|GO:0005737|GO:0008152|GO:0008973|GO:0009117|GO:0043094|GO:0046872 G3DSA:3.30.70.1250|G3DSA:3.40.720.10|MF_00740|PF01676|PIRSF001491|SSF143856|SSF53649|TIGR01696 NJ56_RS03140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000053|IPR000312|IPR013102|IPR013465|IPR017459|IPR017872|IPR018090 Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase, family 3|Pyrimidine nucleoside phosphorylase, C-terminal|Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic|Pyrimidine-nucleoside phosphorylase, conserved site|Thymidine phosphorylase|Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206|GO:0006213|GO:0008152|GO:0009032|GO:0016154|GO:0016757|GO:0016763 G3DSA:1.20.970.10|G3DSA:3.40.1030.10|G3DSA:3.90.1170.30|MF_01628|PF00591|PF02885|PF07831|PIRSF000478|PS00647|SM00941|SSF47648|SSF52418|SSF54680|TIGR02643|TIGR02644 NJ56_RS03145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002915|IPR011343|IPR013785|IPR023649 Aldolase-type TIM barrel|DeoC/FbaB/ lacD aldolase|Deoxyribose-phosphate aldolase|Deoxyribose-phosphate aldolase type II GO:0003824|GO:0004139|GO:0005737|GO:0009264|GO:0016829 G3DSA:3.20.20.70|MF_00592|PF01791|PIRSF001357|SM01133|SSF51569|TIGR00126 NJ56_RS03150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002668|IPR011642|IPR011657|IPR018270 Concentrative nucleoside transporter C-terminal domain|Concentrative nucleoside transporter N-terminal domain|Concentrative nucleoside transporter, metazoan/bacterial|Nucleoside transporter/FeoB GTPase, Gate domain GO:0005337|GO:0016020|GO:1901642 PF01773|PF07662|PF07670|TIGR00804 NJ56_RS03155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001130|IPR018228|IPR032466 Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family GO:0016788|GO:0016888 G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01090|PS01137|SSF51556 NJ56_RS03160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629|GO:0008152 G3DSA:3.40.1090.10|PF01734|SSF52151 NJ56_RS03165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009760 Protein of unknown function DUF1328 GO:0005886 MF_01361|PF07043|PIRSF036466 NJ56_RS03170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 NJ56_RS03175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000795|IPR004161|IPR004548|IPR005225|IPR009000|IPR027417|IPR031157|IPR032090|IPR035647 EF-G domain III/V-like|P-loop containing nucleoside triphosphate hydrolase|Peptide chain release factor 3|Peptide chain release factor 3, C-terminal|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain GO:0003924|GO:0005525|GO:0005737|GO:0006415 G3DSA:2.40.30.10|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00072|PF00009|PF03144|PF16658|PR00315|PS00301|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR00503 NJ56_RS03180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR006464|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain|N-acetyltransferase RimI/Ard1 GO:0006474|GO:0008080|GO:0016407 G3DSA:3.40.630.30|PF00583|SSF55729|TIGR01575 NJ56_RS03185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 G3DSA:3.40.50.10220|PD032475|PF03603|PIRSF029225|SSF102220 NJ56_RS03190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR007848|IPR013675|IPR023543|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|Methyltransferase small, N-terminal|S-adenosyl-L-methionine-dependent methyltransferase|rRNA small subunit methyltransferase C GO:0003676|GO:0006364|GO:0008168|GO:0008649|GO:0008990|GO:0032259 G3DSA:3.40.50.150|MF_01862|PF05175|PF08468|PS00092|SSF53335 NJ56_RS03210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009885 Protein of unknown function DUF1435 PF07256 NJ56_RS03215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 NJ56_RS03220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR002078|IPR002197|IPR009057|IPR013767|IPR025662|IPR027417 DNA binding HTH domain, Fis-type|Homeobox domain-like|P-loop containing nucleoside triphosphate hydrolase|PAS domain|PAS fold|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1 GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.20|G3DSA:3.40.50.300|PF00158|PF00989|PF02954|PS00675|SM00091|SSF46689|SSF52540|SSF55785 NJ56_RS03225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000032|IPR001020|IPR004701|IPR008279|IPR008731|IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain|PEP-utilising enzyme, mobile domain|Phosphocarrier protein HPr-like|Phosphotransferase system, HPr histidine phosphorylation site|Phosphotransferase system, enzyme I N-terminal|Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.274.10|G3DSA:3.30.1340.10|G3DSA:3.40.50.510|G3DSA:3.50.30.10|PF00381|PF00391|PF03610|PF05524|PR00107|PS00369|SSF47831|SSF52009|SSF53062|SSF55594|TIGR01003|TIGR02364 NJ56_RS03230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004007|IPR012737 DhaL domain|Dihydroxyacetone kinase, subunit L GO:0004371|GO:0006071|GO:0016772 PF02734|SM01120|SSF101473|TIGR02365 NJ56_RS03235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004006|IPR012736 DhaK domain|Dihydroxyacetone kinase DhaK, subunit 1 GO:0004371|GO:0006071 G3DSA:3.30.1180.20|G3DSA:3.40.50.10440|PF02733|SSF82549|TIGR02363 NJ56_RS03240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001670|IPR018211 Alcohol dehydrogenase, iron-type|Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|PF00465|PIRSF000112|PS00060|PS00913|SSF56796 NJ56_RS03245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0005215|GO:0006810|GO:0016020 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|SSF82693|SSF82714|SSF82866 NJ56_RS03250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.50.100|G3DSA:3.90.1170.30|PF16576|SSF111369|TIGR01730 NJ56_RS03255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 PF06305 NJ56_RS03260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007016 O-antigen ligase-related PF04932 NJ56_RS03265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002201|IPR011916 Glycosyl transferase, family 9|Lipopolysaccharide heptosyltransferase III, putative GO:0008152|GO:0016757 G3DSA:3.40.50.2000|PF01075|SSF53756|TIGR02201 NJ56_RS03270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019637 Protein of unknown function DUF2501 PF10696 NJ56_RS03275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002818|IPR029062 Class I glutamine amidotransferase-like|DJ-1/PfpI G3DSA:3.40.50.880|PF01965|SSF52317 NJ56_RS03280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000771|IPR011288|IPR013785 Aldolase-type TIM barrel|D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY|Fructose-bisphosphate aldolase, class-II GO:0003824|GO:0005975|GO:0008270|GO:0009025|GO:0016832 G3DSA:3.20.20.70|PF01116|PIRSF001359|PS00806|SSF51569|TIGR00167|TIGR01858 NJ56_RS03285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016624 Uncharacterised conserved protein UCP014753 G3DSA:1.20.1050.10|PF10022|PIRSF014753 NJ56_RS03290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000917|IPR017849|IPR017850|IPR024607 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Sulfatase, N-terminal|Sulfatase, conserved site GO:0003824|GO:0008152|GO:0008484 G3DSA:3.30.1120.10|G3DSA:3.40.720.10|PF00884|PS00149|SSF53649 NJ56_RS03295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007197|IPR013785|IPR023867|IPR023885 4Fe4S-binding SPASM domain|Aldolase-type TIM barrel|Anaerobic sulphatase maturase, radical SAM|Radical SAM GO:0003824|GO:0016491|GO:0051536 G3DSA:3.20.20.70|PD968187|PF04055|PF13186|SSF102114|TIGR03942|TIGR04085 NJ56_RS03300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008928|IPR010905 Glycosyl hydrolase, family 88|Six-hairpin glycosidase-like GO:0003824 G3DSA:1.50.10.10|PF07470|SSF48208 NJ56_RS03305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR011286|IPR016040|IPR020904 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0008678|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735|TIGR01832 NJ56_RS03310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007045|IPR011051|IPR014710|IPR021120|IPR027449 5-keto 4-deoxyuronate isomerase|5-keto-4-deoxyuronate isomerase, N-terminal domain|KduI/IolB isomerase|RmlC-like cupin domain|RmlC-like jelly roll fold GO:0008697|GO:0016861|GO:0045490 G3DSA:2.60.120.10|G3DSA:2.60.120.520|MF_00687|PF04962|PIRSF006625|SSF51182 NJ56_RS03315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003764|IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain|N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448|GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|PIRSF038994|SSF51338|SSF51556|TIGR00221 NJ56_RS03320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 G3DSA:3.40.50.510|PF03610|SSF53062 NJ56_RS03325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 PF03613 NJ56_RS03330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 PF03609 NJ56_RS03335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004720|IPR018455 Phosphotransferase system, sorbose subfamily IIB component|Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 G3DSA:3.40.35.10|PF03830|SSF52728|TIGR00854 NJ56_RS03340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001347|IPR014180 Sugar isomerase (SIS)|Sugar isomerase, AgaS GO:0016861|GO:0097367|GO:1901135 G3DSA:3.40.50.10490|PF01380|SSF53697|TIGR02815 NJ56_RS03345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012062|IPR013785 Aldolase-type TIM barrel|D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0003824|GO:0019402 G3DSA:1.10.400.20|G3DSA:3.20.20.70|PF08013|PIRSF009264|SSF51569|TIGR02810 NJ56_RS03350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001034|IPR011991|IPR014036 DeoR C-terminal sensor domain|DeoR-type HTH domain|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.1360|PF00455|PF08220|PR00037|SM00420|SM01134|SSF100950|SSF46785 NJ56_RS03355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000917|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Sulfatase, N-terminal GO:0003824|GO:0008152|GO:0008484 G3DSA:3.30.1120.10|G3DSA:3.40.720.10|PF00884|SSF53649 NJ56_RS03360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003159|IPR008929|IPR008979|IPR011013|IPR011071|IPR014718|IPR015176|IPR015177|IPR024200 Chondroitin AC/alginate lyase|Chondroitin sulfate ABC endolyase|Galactose mutarotase-like domain|Galactose-binding domain-like|Glycoside hydrolase-type carbohydrate-binding|Lyase, N-terminal|Lyase, catalytic|Polysaccharide lyase family 8, central domain|Polysaccharide lyase family 8-like, C-terminal GO:0003824|GO:0005576|GO:0005975|GO:0016829|GO:0030246|GO:0034000 G3DSA:1.50.10.100|G3DSA:2.60.120.430|G3DSA:2.60.220.10|G3DSA:2.70.98.10|PF02278|PF09092|PF09093|PIRSF034515|SSF48230|SSF49785|SSF49863|SSF74650 NJ56_RS03365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005546|IPR006315 Autotransporter beta-domain|Outer membrane autotransporter barrel GO:0019867 G3DSA:2.40.128.130|PF03797|SM00869|SSF103515|TIGR01414 NJ56_RS03370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031605 Putative OMPG-porin 1 family G3DSA:2.40.160.40|PF16946 NJ56_RS03375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003159|IPR004103|IPR008929|IPR011013|IPR011071|IPR012970|IPR014718 Chondroitin AC/alginate lyase|Galactose mutarotase-like domain|Glycoside hydrolase-type carbohydrate-binding|Polysaccharide lyase 8, N-terminal alpha-helical|Polysaccharide lyase family 8, C-terminal|Polysaccharide lyase family 8, central domain|Polysaccharide lyase family 8-like, C-terminal GO:0003824|GO:0005576|GO:0005975|GO:0016829|GO:0030246 G3DSA:1.50.10.100|G3DSA:2.60.220.10|G3DSA:2.70.98.10|PF02278|PF02884|PF08124|SSF48230|SSF49863|SSF74650 NJ56_RS03380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009331 Oligogalacturonate-specific porin G3DSA:2.40.160.40|PF06178|SSF56935 NJ56_RS03385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006652|IPR015915|IPR019936 Kelch repeat type 1|Kelch-type beta propeller|Mutatrotase, YjhT-like GO:0005515 G3DSA:2.120.10.80|PF01344|SSF117281|TIGR03547 NJ56_RS03390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009320 Antitoxin CbeA GO:0051495 G3DSA:3.30.450.20|PF06154|SSF143737 NJ56_RS03395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004914 Antirestriction protein PD012854|PF03230 NJ56_RS03400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system PF08843 NJ56_RS03405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025159 Transcriptional regulator, AbiEi antitoxin PF13338 NJ56_RS03410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031339 Domain of unknown function DUF4942 PF13708 NJ56_RS03440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002589 Macro domain G3DSA:3.40.220.10|PF01661|SM00506|SSF52949 NJ56_RS03445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR029494 Domain of unknown function DUF4433 PF14487 NJ56_RS03450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR029494 Domain of unknown function DUF4433 PF14487 NJ56_RS03455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 G3DSA:3.90.220.20|PF01420|SSF116734 NJ56_RS03460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007712|IPR035095 Toxin RelE-like domain|Toxin-antitoxin system, RelE/ParE toxin family G3DSA:3.30.2310.20|PF05016|SSF143011|TIGR02385 NJ56_RS03465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007337 RelB antitoxin/Antitoxin DinJ PF04221|TIGR02384 NJ56_RS03490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 G3DSA:3.40.50.200|PF00082|SSF52743 NJ56_RS03495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR003959|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:1.10.10.60|G3DSA:3.40.50.300|PF00004|SM00382|SSF52540 NJ56_RS03505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic PF11726 NJ56_RS03510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010260|IPR011991 DNA-binding transcriptional activator AlpA|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|PF05930 NJ56_RS03525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021696 Protein of unknown function DUF3279 PF11682 NJ56_RS03540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 NJ56_RS03550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004603|IPR011335 DNA mismatch endonuclease vsr|Restriction endonuclease type II-like GO:0004519|GO:0006298 G3DSA:3.40.960.10|PF03852|PIRSF018267|SSF52980|TIGR00632 NJ56_RS03555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001525|IPR018117|IPR029063|IPR031303 C-5 cytosine methyltransferase|DNA methylase, C-5 cytosine-specific, conserved site|DNA methylase, C-5 cytosine-specific, active site|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|G3DSA:3.90.120.10|PF00145|PR00105|PS00094|PS00095|SSF53335|TIGR00675 NJ56_RS03560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011335|IPR015109 Restriction endonuclease type II-like|Restriction endonuclease, type II, EcoRII, C-terminal GO:0003677|GO:0009036|GO:0009307 PF09019|SSF52980 NJ56_RS03565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027417|IPR027785 P-loop containing nucleoside triphosphate hydrolase|UvrD-like helicase C-terminal domain G3DSA:3.40.50.300|PF13245|PF13538|SSF52540 NJ56_RS03570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018742 Protein of unknown function DUF2290 PF10053 NJ56_RS03585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762|IPR018247|IPR023109|IPR025166 DNA breaking-rejoining enzyme, catalytic core|EF-Hand 1, calcium-binding site|Integrase, DNA-binding domain|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13356|PS00018|SSF56349 NJ56_RS03595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005495|IPR030923 LPS export ABC transporter permease LptG|Permease LptG/LptF-related GO:0016021|GO:0043190|GO:0055085 PF03739|TIGR04408 NJ56_RS03600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005495|IPR030922 LPS export ABC transporter permease LptF|Permease LptG/LptF-related GO:0016021|GO:0043190|GO:0055085 PF03739|TIGR04407 NJ56_RS03605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000819|IPR008283|IPR011356|IPR023042 Peptidase M17, leucine aminopeptidase|Peptidase M17, leucine aminopeptidase/peptidase B|Peptidase M17, leucyl aminopeptidase, C-terminal|Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0005737|GO:0006508|GO:0008235|GO:0019538|GO:0030145 G3DSA:3.40.220.10|G3DSA:3.40.630.10|MF_00181|PF00883|PF02789|PR00481|PS00631|SSF52949|SSF53187 NJ56_RS03610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 G3DSA:3.40.50.10110|PF04364|SSF102400 NJ56_RS03615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001412|IPR002300|IPR002303|IPR009008|IPR009080|IPR010978|IPR013155|IPR014729|IPR019499 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valine-tRNA ligase|Valyl-tRNA synthetase, tRNA-binding arm|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain|tRNA-binding arm GO:0000166|GO:0002161|GO:0004812|GO:0004832|GO:0005524|GO:0005737|GO:0006418|GO:0006438 G3DSA:1.10.287.380|G3DSA:1.10.730.10|G3DSA:3.40.50.620|MF_02004|PF00133|PF08264|PF10458|PR00986|PS00178|SSF46589|SSF47323|SSF50677|SSF52374|TIGR00422 NJ56_RS03620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF00583|SSF55729 NJ56_RS03625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009671|IPR016716 Regulator of ribonuclease activity B|Regulator of ribonuclease activity B domain G3DSA:3.30.70.970|MF_01888|PF06877|PIRSF018193|SSF89946 NJ56_RS03630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002292|IPR006130|IPR006131|IPR006132|IPR024904 Aspartate/ornithine carbamoyltransferase|Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain|Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding|Ornithine carbamoyltransferase|Ornithine/putrescine carbamoyltransferase GO:0004585|GO:0006520|GO:0006591|GO:0016597|GO:0016743 G3DSA:3.40.50.1370|MF_01109|PF00185|PF02729|PR00100|PR00102|PS00097|SSF53671|TIGR00658 NJ56_RS03635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005144|IPR012833|IPR019777 ATP-cone domain|Formate C-acetyltransferase glycine radical, conserved site|Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 G3DSA:3.20.70.20|PF03477|PF13597|PS00850|SSF51998|TIGR02487 NJ56_RS03640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001989|IPR012837|IPR013785 Aldolase-type TIM barrel|Radical-activating enzyme, conserved site|Ribonucleoside-triphosphate reductase activating, anaerobic GO:0003824|GO:0005737|GO:0016491|GO:0043365|GO:0051539|GO:0055114 G3DSA:3.20.20.70|PF13353|PIRSF000368|PS01087|SSF102114|TIGR02491 NJ56_RS03645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 PF06754|TIGR03293 NJ56_RS03650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 PF05845|PIRSF020680|SSF159709|TIGR03292 NJ56_RS03655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008773 Phosphonate metabolism protein PhnI GO:0019634 PF05861|PIRSF007313 NJ56_RS03660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 PF06007|PIRSF011468 NJ56_RS03665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR012700|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Phosphonate C-P lyase system, PhnK GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF037116|PS00211|SM00382|SSF52540|TIGR02323 NJ56_RS03670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR012701|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Phosphonate C-P lyase system, PhnL GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR02324 NJ56_RS03675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006680|IPR011059|IPR012696|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain|Phosphonate metabolism PhnM GO:0016787|GO:0016810|GO:0019700 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|PIRSF038971|SSF51338|SSF51556|TIGR02318 NJ56_RS03680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008145|IPR012699|IPR027417 Guanylate kinase/L-type calcium channel beta subunit|P-loop containing nucleoside triphosphate hydrolase|Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 G3DSA:3.40.50.300|MF_00836|PF13238|SM00072|SSF52540|TIGR02322 NJ56_RS03685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001279|IPR017693 Metallo-beta-lactamase|Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 G3DSA:3.60.15.10|PF12706|SSF56281|TIGR03307 NJ56_RS03690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000534|IPR016040 NAD(P)-binding domain|Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 G3DSA:3.40.50.720|SM00859|SSF51735 NJ56_RS03695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011194|IPR012349 FMN-binding split barrel|Uncharacterised protein family UPF0306 GO:0048037 G3DSA:2.30.110.10|MF_00764|PIRSF009554|SSF50475 NJ56_RS03700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000310|IPR005308|IPR008286|IPR011006|IPR011193|IPR015421|IPR015422|IPR015424|IPR027464|IPR027568 CheY-like superfamily|Orn/Lys/Arg decarboxylase, C-terminal|Orn/Lys/Arg decarboxylase, N-terminal|Orn/Lys/Arg decarboxylase, major domain|Ornithine decarboxylase SpeF|Ornithine decarboxylase, N-terminal domain|Ornithine/lysine/arginine decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0004586|GO:0005737|GO:0006520|GO:0016831 G3DSA:3.40.50.220|G3DSA:3.40.640.10|G3DSA:3.90.100.10|G3DSA:3.90.1150.10|PF01276|PF03709|PF03711|PIRSF009393|PS00703|SSF52172|SSF53383|SSF55904|TIGR04301 NJ56_RS03705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004754|IPR027566 Amino acid antiporter|Amino acid/polyamine transporter I|Putrescine transporter PotE GO:0003333|GO:0006865|GO:0015171|GO:0015496|GO:0015822|GO:0015847|GO:0016020|GO:0016021 MF_02073|PF13520|PIRSF006060|TIGR00905|TIGR04299 NJ56_RS03710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000305|IPR022992 GIY-YIG nuclease superfamily|Uncharacterised protein family UPF0213, GIY-YIG endonuclease G3DSA:3.40.1440.10|MF_01029|PF01541|SSF82771 NJ56_RS03715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF13508|SSF55729 NJ56_RS03720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003033|IPR016830 SCP2 sterol-binding domain|Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT G3DSA:3.30.1050.10|PF02036|PIRSF025550|SSF55718 NJ56_RS03725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001539|IPR022998 Peptidase U32|Thiamine phosphate synthase/TenI GO:0006508|GO:0008233 G3DSA:3.20.20.150|PF01136|PS01276|SSF51391 NJ56_RS03730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001539 Peptidase U32 GO:0006508|GO:0008233 PF01136 NJ56_RS03735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005130|IPR021144 Serine dehydratase-like, alpha subunit|Uncharacterised protein family UPF0597 MF_01845|PF03313|PIRSF006054 NJ56_RS03745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011251|IPR019949 Luciferase family oxidoreductase, group 1|Luciferase-like domain GO:0016705|GO:0055114 G3DSA:3.20.20.30|PF00296|SSF51679|TIGR03558 NJ56_RS03750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000629|IPR001650|IPR005580|IPR011545|IPR014001|IPR021046|IPR027417|IPR028618 ATP-dependent RNA helicase DEAD-box, conserved site|ATP-dependent RNA helicase DeaD|Cold-shock protein, DEAD box A, C-terminal|DEAD box helicase DbpA/CsdA, RNA-binding domain|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000027|GO:0003676|GO:0004004|GO:0005524|GO:0016817|GO:0070417 G3DSA:3.40.50.300|MF_00964|PF00270|PF00271|PF03880|PF12343|PS00039|SM00487|SM00490|SSF52540 NJ56_RS03760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR013105|IPR019734|IPR023605 Lipoprotein NlpI|Tetratricopeptide repeat|Tetratricopeptide repeat 2|Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.40.10|PF07719|PF13181|PIRSF004654|SM00028|SSF48452 NJ56_RS03765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001247|IPR003029|IPR004087|IPR004088|IPR012162|IPR012340|IPR015847|IPR015848|IPR020568|IPR022967|IPR027408 Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|K Homology domain|K Homology domain, type 1|Nucleic acid-binding, OB-fold|PNPase/RNase PH domain|Polyribonucleotide nucleotidyltransferase|Polyribonucleotide nucleotidyltransferase, RNA-binding domain|RNA-binding domain, S1|Ribosomal protein S5 domain 2-type fold|S1 domain GO:0000175|GO:0003676|GO:0003723|GO:0004654|GO:0006396|GO:0006402 G3DSA:1.10.10.400|G3DSA:2.40.50.140|G3DSA:3.30.1370.10|G3DSA:3.30.230.70|MF_01595|PF00013|PF00575|PF01138|PF03725|PF03726|PIRSF005499|SM00316|SM00322|SSF50249|SSF54211|SSF54791|SSF55666|TIGR03591 NJ56_RS03770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000589|IPR005290|IPR009068 Ribosomal protein S15|Ribosomal protein S15, bacterial-type|S15/NS1, RNA-binding GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.287.10|MF_01343_B|PD157043|PF00312|PS00362|SM01387|SSF47060|TIGR00952 NJ56_RS03775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002478|IPR002501|IPR014780|IPR015240|IPR015947|IPR020103|IPR032819 PUA domain|PUA-like domain|Pseudouridine synthase II, N-terminal|Pseudouridine synthase, catalytic domain|tRNA pseudouridine synthase II, TruB|tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal|tRNA pseudouridylate synthase B, C-terminal GO:0001522|GO:0003723|GO:0006396|GO:0009451|GO:0009982 G3DSA:2.30.130.10|G3DSA:3.30.2350.10|MF_01080|PF01509|PF09157|PF16198|SSF55120|SSF88697|TIGR00431 NJ56_RS03780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000238|IPR015946|IPR020053|IPR023799 K homology domain-like, alpha/beta|Ribosome-binding factor A|Ribosome-binding factor A domain|Ribosome-binding factor A, conserved site GO:0006364 G3DSA:3.30.300.20|MF_00003|PD007327|PF02033|PS01319|SSF89919|TIGR00082 NJ56_RS03785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000178|IPR000795|IPR004161|IPR005225|IPR006847|IPR009000|IPR009061|IPR013575|IPR023115|IPR027417 Initiation factor 2 associated domain, bacterial|P-loop containing nucleoside triphosphate hydrolase|Putative DNA-binding domain|Small GTP-binding protein domain|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation initiation factor IF- 2, domain 3|Translation initiation factor IF-2, N-terminal|Translation initiation factor aIF-2, bacterial-like|Translation protein, beta-barrel domain GO:0003743|GO:0003924|GO:0005525|GO:0005622|GO:0006413 G3DSA:2.40.30.10|G3DSA:3.30.56.50|G3DSA:3.40.50.10050|G3DSA:3.40.50.300|MF_00100_B|PF00009|PF03144|PF04760|PF08364|PF11987|PS01176|SSF46955|SSF50447|SSF52156|SSF52540|TIGR00231|TIGR00487 NJ56_RS03790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004087|IPR009019|IPR010213|IPR010214|IPR010995|IPR012340|IPR013735|IPR015946|IPR022967|IPR025249|IPR030842 DNA repair Rad51/transcription factor NusA, alpha-helical|K Homology domain|K homology domain, prokaryotic type|K homology domain-like, alpha/beta|KH domain, NusA-like|Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Transcription factor NusA, N-terminal|Transcription termination factor NusA|Transcription termination factor NusA, C-terminal duplication|Transcription termination/antitermination protein NusA, bacterial GO:0000166|GO:0003676|GO:0003700|GO:0003723|GO:0006353|GO:0031554|GO:0031564 G3DSA:1.10.150.20|G3DSA:2.40.50.140|G3DSA:3.30.1480.10|G3DSA:3.30.300.20|MF_00945_B|PF08529|PF13184|PF14520|SM00316|SM00322|SSF47794|SSF50249|SSF54814|SSF69705|TIGR01953|TIGR01954 NJ56_RS03795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003728|IPR028989|IPR028998 Ribosome maturation factor RimP|Ribosome maturation factor RimP, C-terminal|Ribosome maturation factor RimP, N-terminal GO:0042274 G3DSA:2.30.30.180|G3DSA:3.30.300.70|MF_01077|PF02576|PF17384|SSF74942|SSF75420 NJ56_RS03810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PF03840|PR01651|TIGR00810 NJ56_RS03815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005841|IPR005843|IPR005844|IPR005845|IPR005846|IPR006352|IPR016055|IPR016066 Alpha-D-phosphohexomutase superfamily|Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site|Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966|GO:0016868|GO:0071704 G3DSA:3.30.310.50|G3DSA:3.40.120.10|MF_01554_B|PF00408|PF02878|PF02879|PF02880|PR00509|PS00710|SSF53738|SSF55957|TIGR01455 NJ56_RS03820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000489|IPR006390|IPR011005 Dihydropteroate synthase|Dihydropteroate synthase-like|Pterin-binding domain GO:0004156|GO:0009396|GO:0042558|GO:0044237 G3DSA:3.20.20.20|PF00809|PS00792|PS00793|SSF51717|TIGR01496 NJ56_RS03825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000642|IPR003593|IPR003959|IPR003960|IPR005936|IPR011546|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, conserved site|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase|Peptidase M41|Peptidase M41, FtsH extracellular|Peptidase, FtsH GO:0004222|GO:0005524|GO:0006508|GO:0008270|GO:0016020|GO:0016021 G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_01458|PF00004|PF01434|PF06480|PS00674|SM00382|SSF140990|SSF52540|TIGR01241 NJ56_RS03830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002877|IPR004512|IPR015507|IPR029063 Ribosomal RNA large subunit methyltransferase E|Ribosomal RNA methyltransferase E, gammaproteobacteria|Ribosomal RNA methyltransferase FtsJ domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0001510|GO:0006364|GO:0008168|GO:0016436|GO:0032259 G3DSA:3.40.50.150|MF_01547|PF01728|PIRSF005461|SSF53335|TIGR00438 NJ56_RS03835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001890|IPR017924 RNA-binding protein YhbY|RNA-binding, CRM domain GO:0003723 G3DSA:3.30.110.60|PD010559|PF01985|SM01103|SSF75471|TIGR00253 NJ56_RS03840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001437|IPR006359|IPR018151|IPR022691|IPR023459|IPR028624 Transcription elongation factor GreA|Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784|GO:0070063 G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|PF01272|PF03449|PIRSF006092|PS00829|PS00830|SSF46557|SSF54534|TIGR01462 NJ56_RS03845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000667|IPR012338 Beta-lactamase/transpeptidase-like|Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 G3DSA:3.40.710.10|PF02113|PR00922|SSF56601|TIGR00666 NJ56_RS03850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 NJ56_RS03855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003661|IPR004358 Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.5.1040|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 NJ56_RS03860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006073|IPR006074|IPR006169|IPR014100|IPR027417|IPR035101 GTP binding domain|GTP-binding protein Obg/CgtA|GTP-binding protein, Obg-type|GTP1/OBG domain|GTP1/OBG, conserved site|P-loop containing nucleoside triphosphate hydrolase GO:0000287|GO:0003924|GO:0005525 G3DSA:2.70.210.12|G3DSA:3.40.50.300|MF_01454|PF01018|PF01926|PIRSF002401|PR00326|PS00905|SSF52540|SSF82051|TIGR02729 NJ56_RS03865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS03870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001684|IPR018261 Ribosomal protein L27|Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.100|MF_00539|PD003114|PF01016|PR00063|PS00831|SSF110324|TIGR00062 NJ56_RS03875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001787|IPR018258|IPR028909 Ribosomal protein L21|Ribosomal protein L21, conserved site|Ribosomal protein L21-like GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_01363|PF00829|PS01169|SSF141091|TIGR00061 NJ56_RS03880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000092|IPR008949|IPR033749 Isoprenoid synthase domain|Polyprenyl synthetase|Polyprenyl synthetase, conserved site GO:0008299 G3DSA:1.10.600.10|PF00348|PS00444|PS00723|SSF48576 NJ56_RS03885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003314|IPR009061|IPR011991 Mu-type HTH domain|Putative DNA-binding domain|Winged helix-turn-helix DNA-binding domain GO:0003677 G3DSA:1.10.10.10|PF02316|SSF46955 NJ56_RS03890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003314|IPR009061|IPR010749|IPR011991 Mu-type HTH domain|Protein of unknown function DUF1323|Putative DNA-binding domain|Winged helix-turn-helix DNA-binding domain GO:0003677 G3DSA:1.10.10.10|PD060594|PF02316|SSF46955 NJ56_RS03895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 G3DSA:1.10.260.40|PF13693|SSF47413 NJ56_RS03900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001236|IPR001252|IPR001557|IPR010097|IPR015955|IPR016040|IPR022383|IPR023958 L-lactate/malate dehydrogenase|Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal|Lactate/malate dehydrogenase, C-terminal|Lactate/malate dehydrogenase, N-terminal|Malate dehydrogenase, active site|Malate dehydrogenase, type 1|Malate dehydrogenase, type 1, bacterial|NAD(P)-binding domain GO:0003824|GO:0005975|GO:0006099|GO:0006108|GO:0016491|GO:0016615|GO:0016616|GO:0019752|GO:0030060|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.110.10|MF_01516|PF00056|PF02866|PIRSF000102|PS00068|SSF51735|SSF56327|TIGR01772 NJ56_RS03905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001669|IPR011991|IPR020899|IPR020900|IPR024946 Arginine repressor|Arginine repressor C-terminal-like domain|Arginine repressor, C-terminal|Arginine repressor, DNA-binding domain|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355|GO:0006525|GO:0034618|GO:0051259 G3DSA:1.10.10.10|G3DSA:3.30.1360.40|MF_00173|PD007402|PF01316|PF02863|PR01467|SSF46785|SSF55252|TIGR01529 NJ56_RS03910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000713|IPR004101|IPR005757|IPR013221 Mur ligase, C-terminal|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Murein peptide ligase GO:0005524|GO:0009058|GO:0009252|GO:0016874|GO:0016881|GO:0071555 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_02020|PF01225|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01081 NJ56_RS03915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000146|IPR020548|IPR028343|IPR033391 Fructose-1,6-bisphosphatase|Fructose-1,6-bisphosphatase class 1|Fructose-1,6-bisphosphatase, active site|Fructose-1-6-bisphosphatase class I, N-terminal GO:0005975|GO:0016791|GO:0042132|GO:0042578 G3DSA:3.30.540.10|G3DSA:3.40.190.80|MF_01855|PF00316|PIRSF000904|PIRSF500210|PR00115|PS00124|SSF56655 NJ56_RS03920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 G3DSA:3.90.80.10|MF_00209|PF00719|PS00387|SSF50324 NJ56_RS03925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009288|IPR013024 Gamma-glutamyl cyclotransferase-like|Gamma-glutamylcyclotransferase, AIG2-like G3DSA:3.10.490.10|PF06094|SSF110857 NJ56_RS03930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007452 Translocation and assembly module TamB PF04357 NJ56_RS03935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000184|IPR010827|IPR035243 Bacterial surface antigen (D15)|POTRA domain, BamA/TamA-like|TamA, POTRA domain 1 GO:0019867 G3DSA:2.40.160.50|G3DSA:3.10.20.310|PF01103|PF07244|PF17243 NJ56_RS03940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 G3DSA:3.30.1060.10|MF_01401|PF01625|SSF55068|TIGR00401 NJ56_RS03945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR002550|IPR005170|IPR016166|IPR016169 CBS domain|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|Domain of unknown function DUF21|FAD-binding, type 2|Transporter-associated domain GO:0003824|GO:0016614|GO:0050660|GO:0055114 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF01595|PF03471|SM00116|SM01091|SSF54631|SSF56176 NJ56_RS03950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009491 Protein of unknown function DUF1107 G3DSA:3.30.1910.10|PD055267|PF06526 NJ56_RS03955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006513|IPR012336 Conserved hypothetical protein CHP01626, YtfJ|Thioredoxin-like fold G3DSA:3.40.30.10|PF09695|SSF52833|TIGR01626 NJ56_RS03960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000760|IPR006240|IPR020550|IPR020583 3(2),5 -bisphosphate nucleotidase, bacterial|Inositol monophosphatase, conserved site|Inositol monophosphatase, metal-binding site|Inositol monophosphatase-like GO:0000287|GO:0016020|GO:0046854 G3DSA:3.30.540.10|G3DSA:3.40.190.80|PF00459|PS00629|PS00630|SSF56655|TIGR01331 NJ56_RS03965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004843|IPR006146|IPR006179|IPR006294|IPR008334|IPR029052 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase|5'-Nucleotidase, C-terminal|5'-Nucleotidase, conserved site|5'-Nucleotidase/apyrase|Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0000166|GO:0008663|GO:0009117|GO:0009166|GO:0016787|GO:0016788|GO:0046872 G3DSA:3.60.21.10|G3DSA:3.90.780.10|PF00149|PF02872|PR01607|PS00785|PS00786|SSF55816|SSF56300|TIGR01390 NJ56_RS03970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012312|IPR019903 Haemerythrin-like|Repair of iron centres family G3DSA:1.10.3910.10|G3DSA:1.20.120.520|PF01814|PF04405|TIGR03652 NJ56_RS03975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000774|IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain|Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 G3DSA:1.10.287.460|G3DSA:3.10.50.40|PF00254|PF01346|SSF54534 NJ56_RS03980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007340|IPR013731 Opacity-associated protein A|Opacity-associated protein A, N-terminal G3DSA:3.10.350.10|PF04225|PF08525 NJ56_RS03985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009027|IPR020069|IPR020070|IPR020594 Ribosomal protein L9, C-terminal|Ribosomal protein L9, N-terminal|Ribosomal protein L9, bacteria/chloroplast|Ribosomal protein L9/RNase H1, N-terminal GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.10.430.100|G3DSA:3.40.5.10|MF_00503|PF01281|PF03948|PS00651|SSF55653|SSF55658|TIGR00158 NJ56_RS03990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001648|IPR018275 Ribosomal protein S18|Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.640.10|MF_00270|PD002239|PF01084|PR00974|PS00057|SSF46911|TIGR00165 NJ56_RS03995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000424|IPR012340|IPR023646 Nucleic acid-binding, OB-fold|Primosomal replication protein PriB|Primosome PriB/single-strand DNA-binding GO:0003697|GO:0006260|GO:0030894 G3DSA:2.40.50.140|MF_00720|PF00436|PIRSF003135|SSF50249|TIGR04418 NJ56_RS04000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000529|IPR014717|IPR020814|IPR020815 Ribosomal protein S6|Ribosomal protein S6, conserved site|Ribosomal protein S6, plastid/chloroplast|Translation elongation factor EF1B/ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.30.70.60|MF_00360|PF01250|PS01048|SSF54995|TIGR00166 NJ56_RS04010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010854|IPR025543 Dodecin-like|Domain of unknown function DUF1471 G3DSA:3.30.1660.10|PF07338|SSF159871 NJ56_RS04015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001375|IPR029058 Alpha/Beta hydrolase fold|Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 G3DSA:3.40.50.1820|PF00326|SSF53474 NJ56_RS04020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010854|IPR025543 Dodecin-like|Domain of unknown function DUF1471 G3DSA:3.30.1660.10|PF07338|SSF159871 NJ56_RS04025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR010546 Fimbrial-type adhesion domain|Protein of unknown function DUF1120 GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF06551 NJ56_RS04035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR025885|IPR025949 Outer membrane usher protein|PapC, N-terminal domain|PapC-like, C-terminal domain GO:0005215|GO:0005515|GO:0006810|GO:0016020 PF00577|PF13953|PF13954|SSF141729 NJ56_RS04040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001829|IPR008962|IPR013783|IPR016147 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, N-terminal|Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077|GO:0071555 G3DSA:2.60.40.10|PF00345|PR00969|SSF49354 NJ56_RS04045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010546 Protein of unknown function DUF1120 PF06551 NJ56_RS04050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR010546 Fimbrial-type adhesion domain|Protein of unknown function DUF1120 GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF06551 NJ56_RS04055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR010546 Fimbrial-type adhesion domain|Protein of unknown function DUF1120 GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF06551 NJ56_RS04060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001537|IPR004441|IPR013123|IPR024915|IPR029026|IPR029028|IPR029064 23S rRNA (guanosine-2-O-)-methyltransferase RlmB|50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|RNA 2-O ribose methyltransferase, substrate binding|RNA methyltransferase TrmH family|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.30.1330.30|G3DSA:3.40.1280.10|MF_01887|PF00588|PF08032|SM00967|SSF55315|SSF75217|TIGR00186 NJ56_RS04065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003029|IPR004476|IPR011129|IPR011805|IPR011991|IPR012340|IPR013223|IPR013668|IPR022967 Cold shock domain|Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribonuclease B, N-terminal OB domain|Ribonuclease II/ribonuclease R|Ribonuclease R|Ribonuclease R winged-helix domain|S1 domain|Winged helix-turn-helix DNA-binding domain GO:0003676|GO:0003723|GO:0004518|GO:0004540|GO:0016070 G3DSA:1.10.10.10|G3DSA:2.40.50.140|MF_01895|PF00575|PF00773|PF08206|PF08461|SM00316|SM00357|SM00955|SSF50249|TIGR00358|TIGR02063 NJ56_RS04070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000944|IPR011991|IPR023761|IPR030489 Transcription regulator Rrf2-type|Transcription regulator Rrf2-type, conserved site|Transcriptional repressor HTH, NsrR|Winged helix-turn-helix DNA-binding domain GO:0045892 G3DSA:1.10.10.10|MF_01177|PF02082|PS01332|SSF46785|TIGR00738 NJ56_RS04075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001114|IPR018220|IPR027417|IPR033128 Adenylosuccinate synthase, active site|Adenylosuccinate synthase, GTP-binding site|Adenylosuccinate synthetase|P-loop containing nucleoside triphosphate hydrolase GO:0004019|GO:0005525|GO:0006164 G3DSA:3.40.440.10|G3DSA:3.90.170.10|MF_00011|PF00709|PS00513|PS01266|SM00788|SSF52540|TIGR00184 NJ56_RS04080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019201 Protein of unknown function DUF2065 PF09838 NJ56_RS04085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001107|IPR010200 Band 7 domain|HflC GO:0016021|GO:0052547 PF01145|PIRSF005651|SM00244|SSF117892|TIGR01932 NJ56_RS04090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001107|IPR001972|IPR010201|IPR020980 Band 7 domain|HflK|Menbrane protein HflK, N-terminal|Stomatin family GO:0016020|GO:0016021 PF01145|PF12221|PR00721|SM00244|SSF117892|TIGR01933 NJ56_RS04095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006073|IPR016496|IPR025121|IPR027417|IPR032305|IPR035647 EF-G domain III/V-like|GTP binding domain|GTP-binding protein, middle domain|GTPase HflX|GTPase HflX, N-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.300|MF_00900|PF01926|PF13167|PF16360|PIRSF006809|PR00326|SSF52540|SSF54980|TIGR03156 NJ56_RS04100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005001|IPR010920 LSM domain|RNA-binding protein Hfq GO:0003723|GO:0006355 G3DSA:2.30.30.100|MF_00436|PF17209|SSF50182|TIGR02383 NJ56_RS04105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018022|IPR027417 P-loop containing nucleoside triphosphate hydrolase|tRNA dimethylallyltransferase GO:0008033 G3DSA:1.10.287.890|G3DSA:3.40.50.300|MF_00185|PF01715|SSF52540|TIGR00174 NJ56_RS04110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002099|IPR003594|IPR013507|IPR014721|IPR014762|IPR014790|IPR020568|IPR020667 DNA mismatch repair protein family|DNA mismatch repair protein, C-terminal|DNA mismatch repair protein, MutL|DNA mismatch repair, conserved site|Histidine kinase-like ATPase, C-terminal domain|MutL, C-terminal, dimerisation|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0005524|GO:0006298|GO:0030983 G3DSA:3.30.230.10|G3DSA:3.30.565.10|MF_00149|PF01119|PF08676|PF13589|PS00058|SM00853|SM01340|SSF118116|SSF54211|SSF55874|TIGR00585 NJ56_RS04115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002508|IPR018392|IPR021731 AMIN domain|LysM domain|N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 G3DSA:3.10.350.10|G3DSA:3.40.630.40|PF01476|PF01520|PF11741|SM00257|SM00646|SSF53187|SSF54106 NJ56_RS04120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003442|IPR027417 P-loop containing nucleoside triphosphate hydrolase|tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 G3DSA:3.40.50.300|PF02367|SSF52540|TIGR00150 NJ56_RS04125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000631|IPR004443|IPR029056|IPR030677 ATP-dependent (S)-NAD(P)H-hydrate dehydratase|Bifunctional NAD(P)H-hydrate repair enzyme Nnr|Ribokinase-like|YjeF N-terminal domain GO:0052855 G3DSA:3.40.1190.20|G3DSA:3.40.50.10260|MF_01965|MF_01966|PF01256|PF03853|PIRSF017184|SSF53613|SSF64153|TIGR00196|TIGR00197 NJ56_RS04130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004453|IPR009051|IPR013542|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Alpha-helical ferredoxin|Domain of unknown function DUF1730|Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491|GO:0051536 G3DSA:3.30.70.20|MF_00916|PF08331|PF13484|PS00198|SSF46548|TIGR00276 NJ56_RS04150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012337|IPR013520|IPR022894 Exonuclease, RNase T/DNA polymerase III|Oligoribonuclease|Ribonuclease H-like domain GO:0000175|GO:0003676 G3DSA:3.30.420.10|MF_00045|PF00929|SM00479|SSF53098 NJ56_RS04155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004881|IPR010914|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Ribosome biogenesis GTPase RsgA|RsgA GTPase domain GO:0003924|GO:0005525 G3DSA:1.10.40.50|G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01820|PF03193|SSF52540|TIGR00157 NJ56_RS04160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003817|IPR033177|IPR033178 Phosphatidylserine decarboxylase|Phosphatidylserine decarboxylase, prokaryotic type 1|Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 MF_00662|PF02666|TIGR00163 NJ56_RS04165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006685|IPR006686|IPR010920|IPR011014|IPR011066|IPR015943|IPR024393|IPR025692 LSM domain|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, conserved site|Mechanosensitive ion channel MscS, porin domain|Mechanosensitive ion channel MscS, transmembrane-2|Mechanosensitive ion channel inner membrane domain 1|WD40/YVTN repeat-like-containing domain GO:0005515|GO:0016020|GO:0055085 G3DSA:2.130.10.10|G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|PF12794|PF12795|PS01246|SSF50182|SSF82689|SSF82861 NJ56_RS04170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004364|IPR004525|IPR018149 Aminoacyl-tRNA synthetase, class II (D/K/N)|Elongation factor P--(R)-beta-lysine ligase|Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004812|GO:0004824|GO:0005524|GO:0005737|GO:0006418|GO:0006430 G3DSA:3.30.930.10|MF_00174|PF00152|PR00982|SSF55681|TIGR00462 NJ56_RS04175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003952|IPR003953|IPR005884|IPR014006|IPR015939|IPR023753|IPR027477 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain|Fumarate reductase, flavoprotein subunit|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|Fumarate reductase/succinate dehydrogenase, FAD-binding site|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain|Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0016627|GO:0022900|GO:0050660|GO:0055114 G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:4.10.80.40|PF00890|PF02910|PIRSF000171|PR00368|PR00411|PS00504|SSF46977|SSF51905|SSF56425|TIGR01176|TIGR01812 NJ56_RS04180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001041|IPR004489|IPR006058|IPR009051|IPR012675|IPR017896|IPR017900|IPR025192 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Beta-grasp domain|Succinate dehydogenase/fumarate reductase N-terminal|Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.10.20.30|PF13085|PF13183|PS00197|PS00198|SSF46548|SSF54292|TIGR00384 NJ56_RS04185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003510|IPR034804 Fumarate reductase, subunit C|Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 G3DSA:1.20.1300.10|MF_00708|PD015900|PF02300|PIRSF000180|SSF81343 NJ56_RS04190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003418|IPR034804 Fumarate reductase, subunit D|Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0006106|GO:0016020 G3DSA:1.20.1300.10|MF_00709|PD015693|PF02313|PIRSF000179|SSF81343 NJ56_RS04195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000566|IPR002446|IPR012674|IPR022271|IPR022272 Calycin|Lipocalin family conserved site|Lipocalin, ApoD type|Lipocalin, bacterial|Lipocalin/cytosolic fatty-acid binding domain GO:0005215 G3DSA:2.40.128.20|PF08212|PIRSF036893|PR01171|PS00213|SSF50814 NJ56_RS04200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000390 Small multidrug resistance protein family GO:0016021 PF00893|SSF103481 NJ56_RS04205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS04210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR018030|IPR025885|IPR025949 Fimbrial membrane usher, conserved site|Outer membrane usher protein|PapC, N-terminal domain|PapC-like, C-terminal domain GO:0005215|GO:0005515|GO:0006810|GO:0016020 G3DSA:2.60.40.1310|PF00577|PF13953|PF13954|PS01151|SSF141729 NJ56_RS04215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001829|IPR008962|IPR013783|IPR016147|IPR016148|IPR018046 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, C-terminal|Pili assembly chaperone, N-terminal|Pili assembly chaperone, bacterial|Pili assembly chaperone, conserved site GO:0030288|GO:0043711|GO:0061077|GO:0071555 G3DSA:2.60.40.10|PF00345|PF02753|PR00969|PS00635|SSF49354|SSF49584 NJ56_RS04220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS04225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR011991|IPR016032 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00196|PR00038|SM00421|SSF46894 NJ56_RS04230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004302|IPR014756 Cellulose/chitin-binding protein, N-terminal|Immunoglobulin E-set G3DSA:2.70.50.50|PF03067|SSF81296 NJ56_RS04235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001059|IPR008991|IPR011768|IPR012340|IPR013185|IPR013852|IPR014722|IPR015365|IPR020599 Elongation factor P, C-terminal|Nucleic acid-binding, OB-fold|Ribosomal protein L2 domain 2|Translation elongation factor P|Translation elongation factor P/YeiP|Translation elongation factor P/YeiP, central|Translation elongation factor P/YeiP, conserved site|Translation elongation factor, KOW-like|Translation protein SH3-like domain GO:0003746|GO:0005737|GO:0006414|GO:0043043 G3DSA:2.30.30.30|G3DSA:2.40.50.140|MF_00141|PF01132|PF08207|PF09285|PIRSF005901|PS01275|SM00841|SM01185|SSF50104|SSF50249|TIGR00038 NJ56_RS04240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003739|IPR007197|IPR013785|IPR022462 Aldolase-type TIM barrel|Lysine-2,3-aminomutase-like|Lysine-2,3-aminomutase/glutamate 2,3-aminomutase|Radical SAM GO:0003824|GO:0051536 G3DSA:3.20.20.70|PF04055|PF13394|PIRSF004911|SSF102114|TIGR00238|TIGR03821 NJ56_RS04245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025294 Protein of unknown function DUF4156 PF13698 NJ56_RS04250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001844|IPR002423|IPR018370|IPR027409|IPR027413 Chaperonin Cpn60|Chaperonin Cpn60, conserved site|Chaperonin Cpn60/TCP-1 family|GroEL-like apical domain|GroEL-like equatorial domain GO:0005524|GO:0005737|GO:0006457|GO:0042026 G3DSA:1.10.560.10|G3DSA:3.50.7.10|MF_00600|PF00118|PR00298|PS00296|SSF48592|SSF52029|SSF54849|TIGR02348 NJ56_RS04255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011032|IPR018369|IPR020818 Chaperonin GroES, conserved site|GroES chaperonin family|GroES-like GO:0005524|GO:0005737|GO:0006457 G3DSA:2.30.33.40|MF_00580|PF00166|PR00297|PS00681|SM00883|SSF50129 NJ56_RS04260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007313 FxsA cytoplasmic membrane protein GO:0016020 PF04186 NJ56_RS04265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000362|IPR004708|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083 Aspartate ammonia-lyase|Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0006099|GO:0006531|GO:0008797|GO:0016829 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF10415|PR00145|PR00149|PS00163|SSF48557|TIGR00839 NJ56_RS04270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 PF03605|PIRSF004539|TIGR00770 NJ56_RS04275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004323|IPR011322|IPR015867|IPR023700 Divalent cation tolerance protein CutA, Enterobacteria|Divalent ion tolerance protein, CutA|Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0005507|GO:0005737|GO:0010038 G3DSA:3.30.70.120|MF_01160|PF03091|SSF54913 NJ56_RS04280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003834|IPR012336|IPR022910|IPR028250 Cytochrome C biogenesis protein, transmembrane domain|Thiol:disulfide interchange protein DsbD, N-terminal domain|Thiol:disulphide interchange protein DsbD|Thioredoxin-like fold GO:0016020|GO:0017004|GO:0047134|GO:0055114 G3DSA:2.60.40.1250|G3DSA:3.40.30.10|MF_00399|PF02683|PF11412|PF13899|SSF52833|SSF74863 NJ56_RS04285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR011075 Homeobox domain-like|Tetracycline transcriptional regulator, TetR-related, C-terminal GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|SSF46689|SSF48498 NJ56_RS04295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762|IPR023109 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 NJ56_RS04300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011093|IPR011119|IPR011991|IPR022391 Integrating conjugative element relaxase, PFGI-1 class|Putative conjugal transfer nickase/helicase TraI, C-terminal|Uncharacterised domain, helicase/relaxase, putative|Winged helix-turn-helix DNA-binding domain G3DSA:2.40.10.200|PF07514|PF07515|SSF46785|TIGR03760 NJ56_RS04305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003776 YcaO-like domain PF02624|TIGR00702 NJ56_RS04310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012924 TfuA-like, core PF07812 NJ56_RS04315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026337 HEXXH motif domain TIGR04267 NJ56_RS04320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003749|IPR012675|IPR016155 Beta-grasp domain|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|ThiamineS/Molybdopterin converting factor subunit 1 G3DSA:3.10.20.30|PF02597|SSF54285 NJ56_RS04325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000594|IPR001763 Rhodanese-like domain|THIF-type NAD/FAD binding fold GO:0008641 G3DSA:3.40.250.10|G3DSA:3.40.50.720|PF00581|PF00899|SM00450|SSF69572 NJ56_RS04330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS04335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003347 JmjC domain G3DSA:2.60.120.650|PF08007|SSF51197 NJ56_RS04345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006197|IPR015927 Peptidase S24, LexA-like|Peptidase S24/S26A/S26B/S26C GO:0003677|GO:0006355 G3DSA:2.10.109.10|PF00717|PR00726|SSF51306 NJ56_RS04360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006118|IPR006119 Recombinase, conserved site|Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 G3DSA:1.10.10.60|G3DSA:1.20.5.40|G3DSA:3.40.50.1390|PF00239|PS00397|SM00857|SSF53041 NJ56_RS04375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009610 CbtA toxin of type IV toxin-antitoxin system PF06755 NJ56_RS04380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013610|IPR017113 Antirestriction, ArdC|Domain of unknown function DUF1738 PF08401|PIRSF037112 NJ56_RS04400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004914 Antirestriction protein PD012854|PF03230 NJ56_RS04415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011010|IPR013762|IPR023109|IPR024456|IPR024457 DNA breaking-rejoining enzyme, catalytic core|Integrase catalytic domain, putative|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal|Putative integrase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF12834|PF12835|SSF56349 NJ56_RS04420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019720 Plasmid stability protein, StbB PF10784 NJ56_RS04425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009440 Plasmid segregation protein ParM/StbA PF06406 NJ56_RS04435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012931 TraG-like, N-terminal PF07916 NJ56_RS04445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021204 Integrating conjugative element protein, PFL4711 TIGR03755 NJ56_RS04450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009649|IPR026331 Integrating conjugative element protein PFL_4710|TraU PF06834|TIGR03756 NJ56_RS04455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011090 Integrating conjugative element protein, PFL4709 PF07511|TIGR03757 NJ56_RS04460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 G3DSA:3.40.50.200|PF00082|SSF52743 NJ56_RS04465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR003959|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF00004|SM00382|SSF52540 NJ56_RS04475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022303|IPR025955|IPR027417 Conjugative transfer ATPase|P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:3.40.50.300|PF11130|SSF52540|TIGR03744 NJ56_RS04480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022262 Lipoprotein, putative TIGR03751 NJ56_RS04485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005498|IPR021207 Integrating conjugative element protein, PFL4705|Type IV secretion system, VirB10 / TraB / TrbI G3DSA:1.20.1170.10|PF03743|TIGR03752 NJ56_RS04490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021844 Integrating conjugative element protein, PFL4704 PF11920|TIGR03749 NJ56_RS04495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021548 Protein of unknown function DUF2895 PF11444|TIGR03746 NJ56_RS04500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021877 Protein of unknown function DUF3487 PF11990|TIGR03750 NJ56_RS04505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021356 Integrating conjugative element protein PFL4702 PF11190|TIGR03745 NJ56_RS04510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021676 Protein of unknown function DUF3262 PF11660|TIGR03758 NJ56_RS04515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019110 Uncharacterised protein family, RAQPRD PF09686|TIGR01690 NJ56_RS04520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000894 Ribulose bisphosphate carboxylase small chain, domain G3DSA:3.30.190.10 NJ56_RS04530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022266 Integrating conjugative element protein, PFL4697-type PF14348|TIGR03747 NJ56_RS04540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022458|IPR022503|IPR027417|IPR032689 Conjugative coupling factor TraG/TraD|Conjugative coupling factor TraG/TraD, PFGI-1|P-loop containing nucleoside triphosphate hydrolase|TraD/TraG, TraM recognition site G3DSA:3.40.50.300|PF12696|SSF52540|TIGR03743|TIGR03754 NJ56_RS04545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007560|IPR011335 Restriction endonuclease type II-like|Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 G3DSA:3.40.1350.10|PF04471|SSF52980 NJ56_RS04550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021300 Integrating conjugative element protein, PFL4695 PF11072|TIGR03765 NJ56_RS04555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008258|IPR023346 Lysozyme-like domain|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 NJ56_RS04560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022293 Integrating conjugative element protein, PFL4693 TIGR03759 NJ56_RS04565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:1.20.1170.10 NJ56_RS04570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022260 Integrating conjugative element protein PilL, PFGI-1 TIGR03748 NJ56_RS04575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021960 Protein of unknown function DUF3577 PF12101 NJ56_RS04580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003601|IPR003602|IPR005738|IPR006171|IPR013497|IPR013498|IPR013825|IPR023405|IPR023406 DNA topoisomerase III|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|DNA topoisomerase, type IA, zn finger|TOPRIM domain GO:0003677|GO:0003916|GO:0003917|GO:0005694|GO:0006265 G3DSA:1.10.460.10|G3DSA:2.70.20.10|G3DSA:3.30.65.10|G3DSA:3.40.50.140|PF01131|PF01396|PF01751|PR00417|PS00396|SM00436|SM00437|SM00493|SSF56712|SSF57783|TIGR01056 NJ56_RS04590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014996 Integrating conjugative element protein, PFL4669 PF08900|TIGR03761 NJ56_RS04595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic PF13730 NJ56_RS04600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021364 Protein of unknown function DUF2857 G3DSA:1.10.1660.10|PF11198 NJ56_RS04605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016868|IPR024498 Bacteriophage B3, Orf5|Domain of unknown function DUF2786 PF10979|PIRSF028111 NJ56_RS04610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003115|IPR022304 Integrating conjugative element, PFGI-1, ParB|ParB/Sulfiredoxin G3DSA:3.90.1530.10|PF02195|SSF110849|TIGR03764 NJ56_RS04615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007692|IPR007693|IPR007694|IPR016136|IPR027417 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal|DNA helicase, DnaB type|DNA helicase, DnaB-like, C-terminal|DNA helicase, DnaB-like, N-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003678|GO:0005524|GO:0006260 G3DSA:1.10.860.10|G3DSA:3.40.50.300|PF00772|PF03796|SSF48024|SSF52540|TIGR00665 NJ56_RS04625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540 NJ56_RS04630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001991|IPR018107|IPR034703 Proton/glutamate-aspartate symporter GltP|Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter, conserved site GO:0006835|GO:0015293|GO:0016021 G3DSA:1.10.3860.10|MF_02063|PF00375|PR00173|PS00713|PS00714|SSF118215 NJ56_RS04635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR011904|IPR020845|IPR025110|IPR032387 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetate-CoA ligase|Acetyl-coenzyme A synthetase, N-terminal domain GO:0003824|GO:0003987|GO:0008152|GO:0016208|GO:0019427 G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|MF_01123|PF00501|PF13193|PF16177|PS00455|SSF56801|TIGR02188 NJ56_RS04640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007436 Protein of unknown function DUF485 PF04341 NJ56_RS04645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001734|IPR014083|IPR018212 Cation/acetate symporter ActP|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0005215|GO:0005887|GO:0006810|GO:0015123|GO:0016020|GO:0043879|GO:0055085 MF_01426|PF00474|PS00456|PS00457|TIGR00813|TIGR02711 NJ56_RS04675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002695|IPR011607|IPR016193|IPR024051 AICAR transformylase domain|AICARFT/IMPCHase bienzyme|Cytidine deaminase-like|Methylglyoxal synthase-like domain GO:0003824|GO:0003937|GO:0004643|GO:0006164 G3DSA:3.40.140.20|G3DSA:3.40.50.1380|MF_00139|PF01808|PF02142|PIRSF000414|SM00798|SM00851|SSF52335|SSF53927|TIGR00355 NJ56_RS04680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000115|IPR011054|IPR013815|IPR016185|IPR020559|IPR020560|IPR020561|IPR020562 ATP-grasp fold, subdomain 1|Phosphoribosylglycinamide synthetase|Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain|Phosphoribosylglycinamide synthetase, C-domain|Phosphoribosylglycinamide synthetase, N-terminal|Phosphoribosylglycinamide synthetase, conserved site|Pre-ATP-grasp domain|Rudiment single hybrid motif GO:0003824|GO:0004637|GO:0005524|GO:0009113 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|G3DSA:3.90.600.10|MF_00138|PF01071|PF02843|PF02844|PS00184|SM01209|SM01210|SSF51246|SSF52440|SSF56059|TIGR00877 NJ56_RS04685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010858 Protein of unknown function DUF1481 PF07356 NJ56_RS04690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 NJ56_RS04695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007338|IPR023381 Protein of unknown function DUF416|YP001051499.1-like domain G3DSA:1.20.1590.10|PF04222 NJ56_RS04700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007581 Endonuclease V GO:0004519|GO:0006281 MF_00801|PF04493 NJ56_RS04705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000257|IPR006361 Uroporphyrinogen decarboxylase (URO-D)|Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 G3DSA:3.20.20.210|MF_00218|PF01208|PS00906|PS00907|SSF51726|TIGR01464 NJ56_RS04710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR015376|IPR015797|IPR020084|IPR022925 NADH pyrophosphatase NudC|NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site|Zinc ribbon, NADH pyrophosphatase GO:0000210|GO:0016787|GO:0046872 G3DSA:3.90.79.10|MF_00297|PF00293|PF09297|PS00893|SSF55811 NJ56_RS04715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007448|IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd|Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 MF_01181|PF04353|PIRSF016548 NJ56_RS04720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002817|IPR025747 Phosphomethylpyrimidine synthase|ThiC-associated domain GO:0009228|GO:0051536 MF_00089|PF01964|PF13667|TIGR00190 NJ56_RS04725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013785|IPR022998|IPR034291 Aldolase-type TIM barrel|Thiamine phosphate synthase|Thiamine phosphate synthase/TenI GO:0003824|GO:0004789|GO:0009228 G3DSA:3.20.20.70|MF_00097|PF02581|SSF51391|TIGR00693 NJ56_RS04730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000594 THIF-type NAD/FAD binding fold GO:0008641 G3DSA:3.40.50.720|PF00899|SSF69572 NJ56_RS04735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003749|IPR010035|IPR012675|IPR016155 Beta-grasp domain|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|ThiS, thiamine-biosynthesis|ThiamineS/Molybdopterin converting factor subunit 1 G3DSA:3.10.20.30|PF02597|SSF54285|TIGR01683 NJ56_RS04740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008867|IPR013785|IPR033983 Aldolase-type TIM barrel|Thiazole synthase|Thiazole synthase ThiG GO:0003824|GO:0009228 G3DSA:3.20.20.70|MF_00443|PF05690|SSF110399 NJ56_RS04745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007197|IPR010722|IPR012726|IPR013785 Aldolase-type TIM barrel|Biotin and thiamin synthesis-associated domain|Radical SAM|Thiazole biosynthesis ThiH GO:0003824|GO:0005506|GO:0009228|GO:0051536|GO:0051539 G3DSA:3.20.20.70|PF04055|PF06968|SM00876|SSF102114|TIGR02351 NJ56_RS04750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000722|IPR006592|IPR007066|IPR007080|IPR007081|IPR007083|IPR012754 DNA-directed RNA polymerase, subunit beta-prime|RNA polymerase Rpb1, domain 1|RNA polymerase Rpb1, domain 3|RNA polymerase Rpb1, domain 4|RNA polymerase Rpb1, domain 5|RNA polymerase, N-terminal|RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 G3DSA:2.40.40.20|G3DSA:2.40.50.100|MF_01322|PF00623|PF04983|PF04997|PF04998|PF05000|SM00663|SSF64484|TIGR02386 NJ56_RS04755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007120|IPR007121|IPR007641|IPR007642|IPR007644|IPR007645|IPR010243|IPR014724|IPR019462 DNA-directed RNA polymerase beta subunit, bacterial-type|DNA-directed RNA polymerase, beta subunit, external 1 domain|DNA-directed RNA polymerase, subunit 2, domain 6|RNA polymerase Rpb2, OB-fold|RNA polymerase Rpb2, domain 2|RNA polymerase Rpb2, domain 3|RNA polymerase Rpb2, domain 7|RNA polymerase, beta subunit, conserved site|RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 G3DSA:2.40.270.10|G3DSA:2.40.50.100|G3DSA:2.40.50.150|G3DSA:3.90.1100.10|G3DSA:3.90.1110.10|G3DSA:3.90.1800.10|MF_01321|PF00562|PF04560|PF04561|PF04563|PF04565|PF10385|PS01166|SSF64484|TIGR02013 NJ56_RS04760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000206|IPR008932|IPR013823|IPR014719 Ribosomal protein L7/L12|Ribosomal protein L7/L12, C-terminal|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like|Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.5.710|G3DSA:3.30.1390.10|MF_00368|PD001326|PF00542|PF16320|SSF48300|SSF54736|TIGR00855 NJ56_RS04765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001790|IPR002363|IPR022973 Ribosomal protein L10|Ribosomal protein L10, eubacterial, conserved site|Ribosomal protein L10P GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0042254 MF_00362|PD968187|PF00466|PS01109|SSF160369 NJ56_RS04775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002143|IPR005878|IPR016095|IPR023673|IPR023674|IPR028364 Ribosomal protein L1|Ribosomal protein L1, 3-layer alpha/beta-sandwich|Ribosomal protein L1, bacterial-type|Ribosomal protein L1, conserved site|Ribosomal protein L1-like|Ribosomal protein L1/ribosomal biogenesis protein GO:0003723|GO:0003735|GO:0006412|GO:0015934 G3DSA:3.30.190.20|G3DSA:3.40.50.790|MF_01318_B|PF00687|PIRSF002155|PS01199|SSF56808|TIGR01169 NJ56_RS04780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000911|IPR006519|IPR020783|IPR020784|IPR020785 Ribosomal protein L11, C-terminal|Ribosomal protein L11, N-terminal|Ribosomal protein L11, bacterial-type|Ribosomal protein L11, conserved site|Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 G3DSA:1.10.10.250|G3DSA:3.30.1550.10|MF_00736|PD001367|PF00298|PF03946|PS00359|SM00649|SSF46906|SSF54747|TIGR01632 NJ56_RS04785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001062|IPR005824|IPR006645|IPR008991|IPR014722|IPR015869 KOW|NusG, N-terminal|Ribosomal protein L2 domain 2|Transcription antitermination protein, NusG|Transcription antitermination protein, NusG, bacteria, conserved site|Translation protein SH3-like domain GO:0006355|GO:0032784 G3DSA:2.30.30.30|G3DSA:3.30.70.940|MF_00948|PF00467|PF02357|PR00338|PS01014|SM00738|SM00739|SSF50104|SSF82679|TIGR00922 NJ56_RS04790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001901|IPR005807|IPR022943 Preprotein translocase subunit SecE|Protein translocase complex, SecE/Sec61-gamma subunit|SecE subunit of protein translocation complex GO:0006605|GO:0006886|GO:0009306|GO:0015450|GO:0016020|GO:0016021 G3DSA:1.20.5.1030|MF_00422|PF00584|PR01650|PS01067|TIGR00964 NJ56_RS04795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation protein, beta-barrel domain GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485 NJ56_RS04820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004566|IPR006083|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Pantothenate kinase|Phosphoribulokinase/uridine kinase GO:0004594|GO:0005524|GO:0005737|GO:0008152|GO:0015937|GO:0016301 G3DSA:3.40.50.300|MF_00215|PF00485|PIRSF000545|SSF52540|TIGR00554 NJ56_RS04825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003142|IPR004143|IPR004408|IPR004409|IPR008988|IPR011991|IPR013196|IPR030855 Bifunctional ligase/repressor BirA|Biotin operon repressor, helix-turn-helix domain|Biotin protein ligase, C-terminal|Biotin--acetyl-CoA-carboxylase ligase|Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain|Helix-turn-helix, type 11|Transcriptional repressor, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0004077|GO:0006355|GO:0006464 G3DSA:1.10.10.10|G3DSA:2.30.30.100|G3DSA:3.30.930.10|MF_00978|PF02237|PF03099|PF08279|SSF46785|SSF50037|SSF55681|TIGR00121|TIGR00122 NJ56_RS04830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003170|IPR006094|IPR011601|IPR016166|IPR016167|IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD linked oxidase, N-terminal|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|UDP-N-acetylenolpyruvoylglucosamine reductase|UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0003824|GO:0008762|GO:0016491|GO:0016614|GO:0050660|GO:0055114 G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.90.78.10|MF_00037|PF01565|PF02873|SSF56176|SSF56194|TIGR00179 NJ56_RS04855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026816|IPR029039 Flavodoxin domain|Flavoprotein-like domain G3DSA:3.40.50.360|PF12724|SSF52218 NJ56_RS04860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003445|IPR004772 Cation transporter|TrkH potassium transport family GO:0006812|GO:0008324|GO:0016021|GO:0022820|GO:0055085|GO:0071805 PF02386|PIRSF006247|TIGR00933 NJ56_RS04865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001498|IPR015269|IPR015796|IPR020568|IPR020569|IPR035647 EF-G domain III/V-like|Impact family, bacterial/archaeal|Impact, N-terminal|Ribosomal protein S5 domain 2-type fold|Uncharacterised domain UPF0029, Impact, C-terminal|Uncharacterised protein family UPF0029, Impact, conserved site G3DSA:3.30.230.30|G3DSA:3.30.70.240|PF01205|PF09186|PS00910|SSF54211|SSF54980|TIGR00257 NJ56_RS04870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000994|IPR001131|IPR022846 Peptidase M24|Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site|Xaa-Pro dipeptidase GO:0016795 G3DSA:3.90.230.10|MF_01279|PF00557|PS00491|SSF55920 NJ56_RS04875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001753|IPR006108|IPR006176|IPR006180|IPR008927|IPR012799|IPR013328|IPR016040|IPR018376|IPR029045 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|3-hydroxyacyl-CoA dehydrogenase, conserved site|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site|Fatty oxidation complex, alpha subunit FadB|NAD(P)-binding domain GO:0003824|GO:0003857|GO:0004165|GO:0004300|GO:0006631|GO:0008152|GO:0008692|GO:0009062|GO:0016491|GO:0036125|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|MF_01621|PF00378|PF00725|PF02737|PS00067|PS00166|SSF48179|SSF51735|SSF52096|TIGR02437 NJ56_RS04880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002155|IPR012805|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Acetyl-CoA C-acyltransferase FadA|Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0003988|GO:0005737|GO:0006631|GO:0008152|GO:0016042|GO:0016747 G3DSA:3.40.47.10|MF_01620|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930|TIGR02445 NJ56_RS04885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001221|IPR001433|IPR008333|IPR017938 Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF00175|PF00970|PR00410|SSF52343|SSF63380 NJ56_RS04890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002830|IPR012349|IPR023677 FMN-binding split barrel|UbiD decarboxylyase family|UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694|GO:0016831|GO:0048037 G3DSA:1.20.5.570|G3DSA:3.40.1670.10|MF_01636|PF01977|SSF143968|SSF50475|TIGR00148 NJ56_RS04895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011614|IPR020835|IPR024168 Catalase core domain|Catalase, SrpA-type, predicted|Catalase-like domain GO:0004096|GO:0020037|GO:0055114 G3DSA:2.40.180.10|PF00199|PIRSF000296|SM01060|SSF56634 NJ56_RS04900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006645|IPR010215|IPR014722 NusG, N-terminal|Ribosomal protein L2 domain 2|Transcription antitermination protein RfaH GO:0006355 G3DSA:2.30.30.30|G3DSA:3.30.70.940|MF_00951|PF02357|SM00738|SSF82679|TIGR01955 NJ56_RS04905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001731|IPR013785|IPR030656 Aldolase-type TIM barrel|Delta-aminolevulinic acid dehydratase|Delta-aminolevulinic acid dehydratase, active site GO:0003824|GO:0004655|GO:0033014|GO:0046872 G3DSA:3.20.20.70|PF00490|PIRSF001415|PR00144|PS00169|SM01004|SSF51569 NJ56_RS04910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001130|IPR018228|IPR024918|IPR032466 3'-5' ssDNA/RNA exonuclease TatD|Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family GO:0008408|GO:0016788|GO:0016888 G3DSA:3.20.20.140|MF_00901|PF01026|PIRSF005902|PS01090|PS01091|SSF51556 NJ56_RS04915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002033|IPR019820 Sec-independent periplasmic protein translocase TatC|Sec-independent periplasmic protein translocase, conserved site GO:0016021 MF_00902|PF00902|PR01840|PS01218|TIGR00945 NJ56_RS04920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003998|IPR018448 Twin-arginine translocation protein TatB|Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020|GO:0043953 MF_00237|PR01506|TIGR01410 NJ56_RS04925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003369|IPR006312 Sec-independent protein translocase protein TatA/B/E|Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 MF_00236|PF02416|TIGR01411 NJ56_RS04930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004147|IPR010232|IPR011009 Probable protein kinase UbiB|Protein kinase-like domain|UbiB domain GO:0006744 G3DSA:3.30.200.20|MF_00414|PF03109|SSF56112|TIGR01982 NJ56_RS04935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003033 SCP2 sterol-binding domain G3DSA:3.30.1050.10|PF02036|SSF55718 NJ56_RS04940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004033|IPR023576|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|UbiE/COQ5 methyltransferase|UbiE/COQ5 methyltransferase, conserved site GO:0008168 G3DSA:3.40.50.150|MF_01813|PF01209|PS01183|PS01184|SSF53335|TIGR01934 NJ56_RS04945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003798 DNA recombination RmuC G3DSA:1.20.5.340|PF02646 NJ56_RS04950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032816 SNARE associated Golgi protein PF09335 NJ56_RS04955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003706|IPR025299 CstA, C-terminal domain|CstA, N-terminal domain GO:0009267|GO:0016020 PF02554|PF13722 NJ56_RS04960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026893|IPR029021 Protein-tyrosine phosphatase-like|Tyrosine/serine-protein phosphatase IphP-type G3DSA:3.90.190.10|PF13350|SSF52799 NJ56_RS04965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000845|IPR010058|IPR018016 Nucleoside phosphorylase domain|Nucleoside phosphorylase, conserved site|Uridine phosphorylase GO:0003824|GO:0004850|GO:0005737|GO:0009116|GO:0009166|GO:0016763 G3DSA:3.40.50.1580|PF01048|PS01232|SSF53167|TIGR01718 NJ56_RS04970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002925|IPR029058 Alpha/Beta hydrolase fold|Dienelactone hydrolase GO:0016787 G3DSA:3.40.50.1820|PF01738|SSF53474 NJ56_RS04975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002629|IPR006276|IPR013215 Cobalamin-independent methionine synthase|Cobalamin-independent methionine synthase MetE, C-terminal/archaeal|Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652|GO:0009086 G3DSA:3.20.20.210|MF_00172|PF01717|PF08267|PIRSF000382|SSF51726|TIGR01371 NJ56_RS04980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS04985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620|IPR004779 Carboxylate/Amino Acid/Amine Transporter|EamA domain GO:0016020|GO:0016021 PF00892|SSF103481|TIGR00950 NJ56_RS04995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017946|IPR030395 Glycerophosphodiester phosphodiesterase domain|PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 G3DSA:3.20.20.190|PF03009|SSF51695 NJ56_RS05000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0016887|GO:0043190 G3DSA:2.40.50.100|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 NJ56_RS05005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS05010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS05015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006061 Solute-binding family 1, conserved site GO:0006810 G3DSA:3.40.190.10|PF13416|PS01037|SSF53850 NJ56_RS05020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007540 Fimbrial major subunit, CS1-type GO:0009289 PF04449 NJ56_RS05025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032636 Pilus assembly protein, E-set like domain PF16967 NJ56_RS05030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008962|IPR013783 Immunoglobulin-like fold|PapD-like G3DSA:2.60.40.10|SSF49354 NJ56_RS05035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013783 Immunoglobulin-like fold G3DSA:2.60.40.10 NJ56_RS05050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030660 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015658|GO:0015803|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039137|PS00211|SM00382|SSF52540 NJ56_RS05055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|PS00211|SM00382|SSF52540 NJ56_RS05060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001851|IPR021807|IPR035568 ABC transporter, FecCD/TroCD-like|ABC transporter, permease|High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal GO:0005215|GO:0006810|GO:0016020 G3DSA:1.10.3470.10|PF02653|PF11862 NJ56_RS05065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001851|IPR035568 ABC transporter, FecCD/TroCD-like|ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 G3DSA:1.10.3470.10|PF02653 NJ56_RS05070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 NJ56_RS05075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181|IPR032900 Acyl-CoA N-acyltransferase|GNAT domain|PanD regulatory factor PanM GO:0008080|GO:0015940|GO:0031638 G3DSA:3.40.630.30|MF_02018|PF12568|SSF55729 NJ56_RS05080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004381|IPR018193 Glycerate kinase|Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 G3DSA:3.40.50.280|G3DSA:3.90.1510.10|PF02595|PIRSF006078|SSF110738|TIGR00045 NJ56_RS05085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PF02447 NJ56_RS05090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008599|IPR025736 PucR C-terminal helix-turn-helix domain|Putative sugar diacid recognition G3DSA:1.10.10.60|PF05651|PF13556 NJ56_RS05095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000943|IPR007627|IPR007630|IPR009042|IPR011991|IPR012759|IPR013324|IPR013325|IPR014284 RNA polymerase sigma factor RpoH, proteobacteria|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 4|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.601.10|MF_00961|PF00140|PF04542|PF04545|PIRSF000770|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02392|TIGR02937 NJ56_RS05100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003838|IPR004513 ABC transporter permease protein domain|Cell division protein FtsX GO:0007049|GO:0016020|GO:0016021 PF02687|PIRSF003097|TIGR00439 NJ56_RS05105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR005286|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Cell division protein FtsE, ATP-binding|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0051301 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR02673 NJ56_RS05110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000897|IPR003593|IPR004390|IPR013822|IPR027417 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, helical bundle|Signal-recognition particle receptor FtsY GO:0005525|GO:0006614 G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00920|PF00448|PF02881|PS00300|SM00382|SM00962|SM00963|SSF47364|SSF52540|TIGR00064 NJ56_RS05115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR004398|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|RNA methyltransferase, RsmD|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0031167|GO:0032259 G3DSA:3.40.50.150|PF03602|PIRSF004553|PS00092|SSF53335|TIGR00095 NJ56_RS05120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009525 Protein of unknown function DUF1145 PF06611 NJ56_RS05125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019635 Protein of unknown function DUF2500 PF10694 NJ56_RS05130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014949 Protein of unknown function DUF1820 PF08850|PIRSF028538 NJ56_RS05135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012506 YhhN-like GO:0016021 PF07947 NJ56_RS05140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001757|IPR006121|IPR008250|IPR017969|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256 HAD-like domain|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|P-type ATPase|P-type ATPase, transmembrane domain|P-type ATPase, A domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:1.20.1110.10|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PR00941|PS00154|PS01047|PS01229|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01525 NJ56_RS05145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001455|IPR022931 Sulfur carrier protein TusA|TusA-like domain GO:0002143|GO:0097163 G3DSA:3.30.110.40|MF_00413|PF01206|PS01148|SSF64307 NJ56_RS05150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003744 Queuosine precursor transporter PF02592|TIGR00697 NJ56_RS05155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014894 Protein DcrB G3DSA:3.40.1000.10|PF08786 NJ56_RS05160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004017|IPR009051|IPR017753|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Cysteine-rich domain|Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0006810|GO:0016020|GO:0051536 G3DSA:3.30.70.20|PF02754|PF13183|PS00198|SSF46548|TIGR03379 NJ56_RS05165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003953|IPR009158|IPR023753 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain|Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0016491|GO:0055114 G3DSA:3.50.50.60|MF_00753|PF00890|PIRSF000141|SSF51905|TIGR03378 NJ56_RS05170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000447|IPR006076|IPR007419|IPR017752|IPR023753 BFD-like [2Fe-2S]-binding domain|FAD dependent oxidoreductase|FAD-dependent glycerol-3-phosphate dehydrogenase|FAD/NAD(P)-binding domain|Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0006072|GO:0009331|GO:0010181|GO:0016491|GO:0046174|GO:0050660|GO:0055114 G3DSA:3.50.50.60|PF01266|PF04324|PR01001|PS00977|PS00978|SSF51905|TIGR03377 NJ56_RS05180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000849|IPR005267|IPR011701|IPR020846|IPR021159 Glycerate/sugar phosphate transporter, conserved site|Glycerol-3-phosphate transporter|Major facilitator superfamily|Major facilitator superfamily domain|Sugar phosphate transporter GO:0005215|GO:0006810|GO:0015169|GO:0015794|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PIRSF002808|PS00942|SSF103473|TIGR00712|TIGR00881 NJ56_RS05185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017946|IPR030395 Glycerophosphodiester phosphodiesterase domain|PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 G3DSA:3.20.20.190|PF03009|SSF51695 NJ56_RS05190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000150|IPR006379|IPR023214 Cof family|HAD-like domain|HAD-superfamily hydrolase, subfamily IIB GO:0016787 G3DSA:3.40.50.1000|PF08282|PS01228|PS01229|SSF56784|TIGR00099|TIGR01484 NJ56_RS05195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022742|IPR029058 Alpha/Beta hydrolase fold|Serine aminopeptidase, S33 G3DSA:3.40.50.1820|PF12146|SSF53474 NJ56_RS05200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001123|IPR004778 Amino acid exporter protein, LeuE-type|Homoserine/Threonine efflux protein GO:0006865|GO:0016020|GO:0016021 PF01810|TIGR00949 NJ56_RS05205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001650|IPR002121|IPR004589|IPR006293|IPR010997|IPR011545|IPR011991|IPR014001|IPR018982|IPR027417|IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain|DEAD/DEAH box helicase domain|DNA helicase, ATP-dependent, RecQ type|DNA helicase, ATP-dependent, RecQ type, bacterial|HRDC domain|HRDC-like|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|RQC domain|Winged helix-turn-helix DNA-binding domain GO:0000166|GO:0003676|GO:0003824|GO:0004003|GO:0005524|GO:0005622|GO:0006260|GO:0006281|GO:0006310|GO:0008026|GO:0009432|GO:0043140|GO:0044237 G3DSA:1.10.10.10|G3DSA:1.10.150.80|G3DSA:3.40.50.300|PF00270|PF00271|PF00570|PF09382|PF16124|SM00341|SM00487|SM00490|SM00956|SSF47819|SSF52540|TIGR00614|TIGR01389 NJ56_RS05210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 G3DSA:2.40.230.10|PF02253|PR01486|SSF56931 NJ56_RS05215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003736|IPR006683|IPR029069 HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 NJ56_RS05220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620|IPR004626 EamA domain|RarD protein GO:0005215|GO:0005887|GO:0006810|GO:0016020|GO:0016021 PF00892|SSF103481|TIGR00688 NJ56_RS05225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002523|IPR004488 Magnesium/cobalt transport protein CorA|Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020|GO:0030001|GO:0046873|GO:0055085 G3DSA:1.20.58.340|G3DSA:3.30.460.20|PF01544|SSF143865|SSF144083|TIGR00383 NJ56_RS05230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011051|IPR014710|IPR027565 Cupin fold metalloprotein, WbuC family|RmlC-like cupin domain|RmlC-like jelly roll fold G3DSA:2.60.120.10|SSF51182|TIGR04366 NJ56_RS05235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009215|IPR013785|IPR015813 Aldolase-type TIM barrel|Pyruvate/Phosphoenolpyruvate kinase-like domain|TIM-barrel domain, IGPS-like GO:0003824 G3DSA:1.20.5.460|G3DSA:3.20.20.70|PF09370|PIRSF034452|SSF51621 NJ56_RS05240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008322 Uncharacterised protein family UPF0261 MF_00677|PF06792|PIRSF033271 NJ56_RS05245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001647|IPR009057 DNA-binding HTH domain, TetR-type|Homeobox domain-like GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|SSF46689 NJ56_RS05250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005753|IPR014017|IPR027417|IPR034739 DNA helicase, ATP-dependent, UvrD type|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0004003|GO:0005524|GO:0005737|GO:0006268|GO:0016787 G3DSA:3.40.50.300|PF00580|PF13361|SSF52540|TIGR01075 NJ56_RS05255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006439|IPR023214 HAD hydrolase, subfamily IA|HAD-like domain GO:0008152|GO:0016787 G3DSA:3.40.50.1000|PF00702|SSF56784|TIGR01549 NJ56_RS05260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR011931|IPR013762|IPR023009|IPR023109 DNA breaking-rejoining enzyme, catalytic core|Integrase, Lambda-type, N-terminal|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC|Tyrosine recombinase XerC/XerD GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01808|PF00589|PF02899|SSF47823|SSF56349|TIGR02224 NJ56_RS05265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007435|IPR029016 GAF domain-like|Protein of unknown function DUF484 G3DSA:3.30.450.40|PF04340 NJ56_RS05270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001653|IPR018510 Diaminopimelate epimerase, DapF|Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 G3DSA:3.10.310.10|MF_00197|PF01678|PS01326|SSF54506|TIGR00652 NJ56_RS05275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032831 Prokaryotic lipoprotein-attachment site PF13627 NJ56_RS05280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002908|IPR020895 Frataxin conserved site|Frataxin/CyaY GO:0008199|GO:0016226 G3DSA:3.30.920.10|MF_00142|PF01491|PS01344|SM01219|SSF55387|TIGR03421 NJ56_RS05285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000274|IPR024685|IPR024686 Adenylate cyclase class-I, N-terminal domain|Adenylate cyclase class-I, conserved site|Adenylate cyclase, class-I GO:0004016|GO:0006171 PF01295|PF12633|PIRSF001444|PS01092|PS01093 NJ56_RS05290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000860|IPR022417|IPR022418|IPR022419 Porphobilinogen deaminase|Porphobilinogen deaminase, C-terminal|Porphobilinogen deaminase, N-terminal|Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 G3DSA:3.30.160.40|G3DSA:3.40.190.10|MF_00260|PF01379|PF03900|PIRSF001438|PR00151|PS00533|SSF53850|SSF54782|TIGR00212 NJ56_RS05295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 G3DSA:3.40.50.10090|PF02602|SSF69618 NJ56_RS05300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX G3DSA:3.90.20.10|PF04375 NJ56_RS05305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005254|IPR010817|IPR011990 HemY, N-terminal|Heme biosynthesis-associated TPR protein|Tetratricopeptide-like helical domain GO:0005515|GO:0016020|GO:0042168 G3DSA:1.25.40.10|PF07219|SSF48452|TIGR00540 NJ56_RS05335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0003333|GO:0006810|GO:0006865|GO:0015171|GO:0016020|GO:0016021|GO:0055085 PF00324|PIRSF006060|PS00218 NJ56_RS05340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004629|IPR013785|IPR023085 Aldolase-type TIM barrel|Glycosyl transferase WecB/TagA/CpsF|UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0003824|GO:0009058|GO:0009246|GO:0016758 G3DSA:3.20.20.70|MF_01001|PF03808|TIGR00696 NJ56_RS05345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 MF_01003|PF06899 NJ56_RS05350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 G3DSA:3.40.50.2000|MF_01002|PF07429 NJ56_RS05355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002797|IPR032896 Lipid III flippase WzxE|Polysaccharide biosynthesis protein GO:0005886|GO:0009246|GO:0016020 MF_02024|PF01943 NJ56_RS05360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000653|IPR012749|IPR015421|IPR015422|IPR015424|IPR032894 DegT/DnrJ/EryC1/StrS aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|dTDP-4-amino-4,6-dideoxygalactose transaminase WecE|dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like GO:0003824|GO:0009246|GO:0019180 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_02026|PF01041|PIRSF000390|SSF53383|TIGR02379 NJ56_RS05365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR012752|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain|dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 G3DSA:3.40.630.30|MF_02027|PF00583|SSF55729|TIGR02382 NJ56_RS05370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005835|IPR005907|IPR029044 Glucose-1-phosphate thymidylyltransferase, short form|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain GO:0008879|GO:0009058|GO:0016779|GO:0045226 G3DSA:3.90.550.10|PF00483|SSF53448|TIGR01207 NJ56_RS05375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005888|IPR016040 NAD(P)-binding domain|dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|SSF51735|TIGR01181 NJ56_RS05380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001732|IPR008927|IPR014026|IPR014027|IPR016040|IPR017476|IPR028359|IPR032891 6-phosphogluconate dehydrogenase C-terminal domain-like|NAD(P)-binding domain|UDP-N-acetyl-D-mannosamine dehydrogenase WecC|UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0000271|GO:0009246|GO:0016616|GO:0016628|GO:0051287|GO:0055114|GO:0089714 G3DSA:1.20.5.170|G3DSA:3.40.50.720|MF_02029|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500136|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026 NJ56_RS05385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003331|IPR029767|IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB|UDP-N-acetylglucosamine 2-epimerase WecB-like|UDP-N-acetylglucosamine 2-epimerase domain GO:0008761|GO:0009246 G3DSA:3.40.50.2000|MF_02028|PF02350|SSF53756|TIGR00236 NJ56_RS05390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003856|IPR032895 ECA polysaccharide chain length modulation protein WzzE|Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0009246|GO:0016020|GO:0016021 G3DSA:1.10.287.210|G3DSA:3.30.1890.10|MF_02025|PF02706|SSF160355 NJ56_RS05395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000715|IPR012750 Glycosyl transferase, family 4|Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0008963|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MF_02030|PF00953|TIGR02380 NJ56_RS05400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000194|IPR003593|IPR004665|IPR011112|IPR011113|IPR011129|IPR012340|IPR027417 AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|Cold shock domain|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Rho termination factor, N-terminal|Rho termination factor, RNA-binding domain|Transcription termination factor Rho GO:0003676|GO:0003723|GO:0005524|GO:0006353|GO:0008186 G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01884|PF00006|PF07497|PF07498|SM00357|SM00382|SM00959|SSF50249|SSF52540|SSF68912|TIGR00767 NJ56_RS05405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005746|IPR012336|IPR013766|IPR017937 Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like fold GO:0006662|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|SSF52833|TIGR01068 NJ56_RS05410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000629|IPR001650|IPR011545|IPR014001|IPR023554|IPR027417 ATP-dependent RNA helicase DEAD-box, conserved site|ATP-dependent RNA helicase RhlB type|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0004004|GO:0005524 G3DSA:3.40.50.300|MF_00661|PF00270|PF00271|PS00039|SM00487|SM00490|SSF52540 NJ56_RS05415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003695|IPR022371|IPR023709|IPR030673 Exopolyphosphatase|Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase|Ppx/GppA phosphatase|Pyrophosphatase, GppA/Ppx-type GO:0004309|GO:0006793|GO:0008894|GO:0015974 G3DSA:3.30.420.150|G3DSA:3.30.420.40|MF_01550|PF02541|PIRSF001267|SSF109604|SSF53067|TIGR03706 NJ56_RS05420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005752|IPR014017|IPR027417|IPR034739 ATP-dependent DNA helicase Rep|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0003677|GO:0004003|GO:0005524|GO:0006268|GO:0016787 G3DSA:3.40.50.300|MF_01920|PF00580|PF13361|SSF52540|TIGR01074 NJ56_RS05425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:3.10.50.40|PF13616|SSF54534 NJ56_RS05430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000506|IPR008927|IPR013023|IPR013116|IPR013328|IPR016040 6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Acetohydroxy acid isomeroreductase C-terminal|Acetohydroxy acid isomeroreductase, NADPH-binding domain|Ketol-acid reductoisomerase|NAD(P)-binding domain GO:0004455|GO:0009082|GO:0016491|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|MF_00435|PF01450|PF07991|SSF48179|SSF51735|TIGR00465 NJ56_RS05435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS05440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003610|IPR013783|IPR031161 Carbohydrate-binding module family 5/12|Immunoglobulin-like fold|Peptidase family M60 domain GO:0004553|GO:0005576|GO:0005975|GO:0030246 G3DSA:2.10.10.20|G3DSA:2.60.40.10|PF13402|SM00495|SM01276|SSF51055 NJ56_RS05445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000634|IPR001721|IPR001926|IPR005787 ACT-like domain|Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Threonine dehydratase, biosynthetic|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004794|GO:0006520|GO:0009097|GO:0030170 G3DSA:3.40.1020.10|G3DSA:3.40.50.1100|PF00291|PF00585|PS00165|SSF53686|SSF55021|TIGR01124 NJ56_RS05450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000581|IPR004404|IPR015928|IPR020558 Aconitase/3-isopropylmalate dehydratase, swivel|Dihydroxy-acid dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0004160|GO:0008152|GO:0009082 MF_00012|PF00920|PS00886|PS00887|SSF143975|SSF52016|TIGR00110 NJ56_RS05460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001544|IPR005785|IPR018300 Aminotransferase class IV|Aminotransferase, class IV, conserved site|Branched-chain amino acid aminotransferase I GO:0003824|GO:0004084|GO:0008152|GO:0009081 G3DSA:3.20.10.10|G3DSA:3.30.470.10|PF01063|PS00770|SSF56752|TIGR01122 NJ56_RS05465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:3.30.70.260|PF13710|SSF55021 NJ56_RS05470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011766|IPR012000|IPR012001|IPR012846|IPR029035|IPR029061 Acetolactate synthase, large subunit, biosynthetic|DHS-like NAD/FAD-binding domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0003984|GO:0009082|GO:0030976|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|SSF52467|SSF52518|TIGR00118 NJ56_RS05475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012567 IlvGEDA operon leader peptide GO:0009082 PF08046 NJ56_RS05480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000523|IPR001208|IPR003593|IPR004482|IPR014721|IPR020568|IPR025158|IPR027417 AAA+ ATPase domain|MCM domain|Magnesium chelatase ChlI domain|Mg chelatase-related protein|Mg chelatase-related protein, C-terminal domain|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0003677|GO:0005524|GO:0006270 G3DSA:3.30.230.10|G3DSA:3.40.50.300|PF01078|PF13335|PF13541|PR01657|SM00382|SSF52540|SSF54211|TIGR00368 NJ56_RS05485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007335 Protein of unknown function DUF413 PF04219 NJ56_RS05490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991|IPR020890 LysR, substrate-binding|Transcription regulator HTH, HdfR|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006355|GO:0045892 G3DSA:1.10.10.10|G3DSA:3.40.190.10|MF_01233|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS05535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001920|IPR004391|IPR015942|IPR018187|IPR033134 Asp/Glu racemase|Asp/Glu racemase, active site 1|Asp/Glu racemase, active site 2|Asp/Glu/hydantoin racemase|Glutamate racemase GO:0006807|GO:0008152|GO:0008881|GO:0009252|GO:0016855|GO:0036361 G3DSA:3.40.50.1860|MF_00258|PF01177|PS00923|PS00924|SSF53681|TIGR00067 NJ56_RS05545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010280|IPR011869|IPR029063|IPR030390|IPR030391 (Uracil-5)-methyltransferase family|RNA methyltransferase TrmA, active site|RNA methyltransferase TrmA, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0008173|GO:0030697 G3DSA:3.40.50.150|MF_01011|PF05958|PS01230|PS01231|SSF53335|TIGR02143 NJ56_RS05550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009867 Protein of unknown function DUF1422 PD076479|PF07226 NJ56_RS05555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001647|IPR009057|IPR023764 DNA-binding HTH domain, TetR-type|Homeobox domain-like|Transcriptional repressor HTH, FabR GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|MF_01190|PF00440|SSF46689 NJ56_RS05560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004099|IPR016156|IPR022962|IPR023753 FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain|Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0016491|GO:0045454|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.40.50.720|G3DSA:3.50.50.60|MF_00247|PF02852|PF07992|PIRSF000350|PR00368|PR00411|SSF51905|SSF55424 NJ56_RS05565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS05570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002109|IPR011767|IPR011906|IPR012336|IPR013740|IPR014025 Glutaredoxin|Glutaredoxin active site|Glutaredoxin domain|Glutaredoxin subgroup|Redoxin|Thioredoxin-like fold GO:0009055|GO:0015035|GO:0016491|GO:0045454 G3DSA:3.40.30.10|PF00462|PF08534|PR00160|PS00195|SSF52833|TIGR02190 NJ56_RS05575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004099|IPR016156|IPR023753 FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0016491|GO:0045454|GO:0050660|GO:0055114 G3DSA:1.10.287.990|G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|SSF51905|SSF55424 NJ56_RS05585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008651|IPR010985|IPR013321|IPR035069 Arc-type ribbon-helix-helix|Ribbon-helix-helix|TTHA1013/TTHA0281-like|Uncharacterised protein family HicB GO:0006355 G3DSA:1.10.1220.10|G3DSA:3.30.2390.10|PF05534|SSF143100|SSF47598 NJ56_RS05590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006260 TonB, C-terminal GO:0006810 G3DSA:3.30.1150.10|PF03544|SSF74653|TIGR01352 NJ56_RS05595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003997|IPR006144|IPR010129 RTX secretion protein D, Gram-negative bacteria|Secretion protein HlyD, conserved site|Type I secretion membrane fusion protein, HlyD family GO:0008565|GO:0009306|GO:0015031|GO:0016020|GO:0016021 G3DSA:2.40.50.100|PF13437|PF13533|PR01490|PS00543|TIGR01843 NJ56_RS05600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR010128|IPR011527|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter-like|ATPase, type I secretion system, PrtD|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0008565|GO:0016021|GO:0016887|GO:0030253|GO:0030256|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR01842 NJ56_RS05605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010495 Haem-binding HasA G3DSA:3.30.1500.10|PF06438|SSF54621 NJ56_RS05610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000531|IPR010949|IPR011276|IPR012910 TonB-dependent haem/haemoglobin receptor|TonB-dependent haemoglobin/transferrin/lactoferrin receptor|TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain GO:0004872|GO:0005215|GO:0006810|GO:0016020|GO:0019867 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01785|TIGR01786 NJ56_RS05615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000362|IPR008948|IPR009049|IPR020557|IPR022761|IPR024083|IPR029419 Argininosuccinate lyase|Argininosuccinate lyase, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004056|GO:0042450 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00006|PF00206|PF14698|PR00145|PR00149|PS00163|SSF48557|TIGR00838 NJ56_RS05620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001518|IPR014729|IPR018223|IPR023434|IPR024074 Argininosuccinate synthase|Argininosuccinate synthase, conserved site|Argininosuccinate synthase, type 1 subfamily|Argininosuccinate synthetase, catalytic/multimerisation domain body|Rossmann-like alpha/beta/alpha sandwich fold GO:0004055|GO:0005524|GO:0006526 G3DSA:1.20.5.470|G3DSA:3.40.50.620|G3DSA:3.90.1260.10|MF_00005|PF00764|PS00564|PS00565|SSF52402|SSF69864|TIGR00032 NJ56_RS05625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001048|IPR004662 Acetylglutamate kinase|Aspartate/glutamate/uridylate kinase GO:0003991|GO:0005737|GO:0006526 G3DSA:3.40.1160.10|MF_00082_B|PF00696|PIRSF000728|SSF53633|TIGR00761 NJ56_RS05630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000534|IPR000706|IPR012280|IPR016040|IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site|N-acetyl-gamma-glutamyl-phosphate reductase, type 1|NAD(P)-binding domain|Semialdehyde dehydrogenase, NAD-binding|Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0006526|GO:0008652|GO:0016620|GO:0046983|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_00150|PF01118|PF02774|PS01224|SM00859|SSF51735|SSF55347|TIGR01850 NJ56_RS05635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001261|IPR002933|IPR010169|IPR011650 Acetylornithine deacetylase ArgE|ArgE/DapE/ACY1/CPG2/YscS, conserved site|Peptidase M20|Peptidase M20, dimerisation domain GO:0005737|GO:0006508|GO:0006526|GO:0008152|GO:0008237|GO:0008777|GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|MF_01108|PF01546|PF07687|PS00758|PS00759|SSF53187|SSF55031|TIGR01892 NJ56_RS05640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR015813|IPR018129|IPR021135|IPR022805|IPR033129 Phosphoenolpyruvate carboxylase|Phosphoenolpyruvate carboxylase, His active site|Phosphoenolpyruvate carboxylase, Lys active site|Phosphoenolpyruvate carboxylase, bacterial/plant-type|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824|GO:0006099|GO:0008964|GO:0015977 G3DSA:1.20.1440.90|G3DSA:3.20.20.60|MF_00595|PF00311|PR00150|PS00393|PS00781|SSF51621 NJ56_RS05650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003171|IPR004620|IPR029041 5,10-methylenetetrahydrofolate reductase|FAD-linked oxidoreductase-like|Methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0006555|GO:0009086|GO:0055114 G3DSA:3.20.20.220|PF02219|SSF51730|TIGR00676 NJ56_RS05655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011009 Protein kinase-like domain SSF56112 NJ56_RS05665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011009 Protein kinase-like domain G3DSA:1.10.510.10|SSF56112 NJ56_RS05670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001048|IPR001341|IPR001342|IPR005106|IPR011147|IPR016040|IPR018042|IPR019811 Aspartate kinase domain|Aspartate kinase, conserved site|Aspartate/glutamate/uridylate kinase|Aspartate/homoserine dehydrogenase, NAD-binding|Bifunctional aspartokinase/homoserine dehydrogenase I|Homoserine dehydrogenase, catalytic|Homoserine dehydrogenase, conserved site|NAD(P)-binding domain GO:0004072|GO:0004412|GO:0006520|GO:0008652|GO:0009067|GO:0016491|GO:0050661|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.1160.10|G3DSA:3.40.50.720|PF00696|PF00742|PF03447|PIRSF000727|PS00324|PS01042|SSF51735|SSF53633|SSF55347|TIGR00657 NJ56_RS05675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000277|IPR011821|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|O-succinylhomoserine (thiol)-lyase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383|TIGR02080 NJ56_RS05680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002084|IPR010985|IPR023453 Methionine repressor MetJ|Methionine repressor MetJ domain|Ribbon-helix-helix GO:0003700|GO:0006355|GO:0006555 G3DSA:1.10.140.10|MF_00744|PD020365|PF01340|SSF47598 NJ56_RS05685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002150|IPR027491|IPR034704 L28p-like|Ribosomal protein L31|Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00501|PF01197|PR01249|PS01143|SSF143800|TIGR00105 NJ56_RS05690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001650|IPR005259|IPR011545|IPR014001|IPR027417 DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Primosomal protein N' GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006260|GO:0032508 G3DSA:3.40.50.300|MF_00983|PF00270|PF00271|SM00487|SM00490|SSF52540|TIGR00595 NJ56_RS05695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS05700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007730|IPR011930 Cell division protein FtsN|Sporulation-related domain GO:0005515|GO:0042834 G3DSA:3.30.70.1070|MF_02039|PF05036|SSF110997|TIGR02223 NJ56_RS05705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001353|IPR022281|IPR029055 ATP-dependent protease, HslV subunit|Nucleophile aminohydrolases, N-terminal|Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0006508|GO:0009376|GO:0051603 G3DSA:3.60.20.10|MF_00248|PF00227|PIRSF039093|SSF56235|TIGR03692 NJ56_RS05710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR003959|IPR004491|IPR019489|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Heat shock protein HslU|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 G3DSA:1.10.8.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00249|PF00004|PF07724|PF10431|SM00382|SM01086|SSF52540|TIGR00390 NJ56_RS05715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000537|IPR004657|IPR026046 1,4-dihydroxy-2-naphthoate octaprenyltransferase|UbiA prenyltransferase domain containing protein 1|UbiA prenyltransferase family GO:0004659|GO:0009234|GO:0016021|GO:0016765|GO:0046428 MF_01937|PF01040|PIRSF005355|TIGR00751 NJ56_RS05720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005493|IPR010203|IPR014339 Regulator of ribonuclease activity A|Regulator of ribonuclease activity A, gammaproteobacteria|Ribonuclease E inhibitor RraA/RraA-like protein GO:0008428|GO:0051252 G3DSA:3.50.30.40|MF_00471|PF03737|SSF89562|TIGR01935|TIGR02998 NJ56_RS05725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 G3DSA:1.20.5.370|MF_01196|PF06005 NJ56_RS05735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000425|IPR022357|IPR023271 Aquaporin-like|Major intrinsic protein|Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 G3DSA:1.20.1080.10|PF00230|PR00783|PS00221|SSF81338|TIGR00861 NJ56_RS05740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000577|IPR005999|IPR018483|IPR018484|IPR018485 Carbohydrate kinase, FGGY|Carbohydrate kinase, FGGY, C-terminal|Carbohydrate kinase, FGGY, N-terminal|Carbohydrate kinase, FGGY, conserved site|Glycerol kinase GO:0004370|GO:0005975|GO:0006072|GO:0016773 G3DSA:3.30.420.40|MF_00186|PF00370|PF02782|PIRSF000538|PS00445|PS00933|SSF53067|TIGR01311 NJ56_RS05745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 G3DSA:3.30.540.10|PF03320|PIRSF004532|SSF56655|TIGR00330 NJ56_RS05750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS05755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001433|IPR008333|IPR017938 Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF00175|PF00970|SSF52343|SSF63380 NJ56_RS05760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008523 Protein of unknown function DUF805 GO:0016021 PF05656 NJ56_RS05765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009918 Protein of unknown function DUF1454 PF07305 NJ56_RS05770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000652|IPR013785|IPR020861|IPR022896 Aldolase-type TIM barrel|Triosephosphate isomerase|Triosephosphate isomerase, active site|Triosephosphate isomerase, bacterial/eukaryotic GO:0003824|GO:0004807|GO:0006096|GO:0008152 G3DSA:3.20.20.70|MF_00147_B|PF00121|PS00171|SSF51351|TIGR00419 NJ56_RS05775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005669|IPR034408 Sulphate/thiosulphate-binding site|Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419|GO:1901681 G3DSA:3.40.190.10|PF13531|PS00757|SSF53850|TIGR00971 NJ56_RS05780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000023|IPR012003|IPR012828|IPR015912|IPR022953 ATP-dependent 6-phosphofructokinase|ATP-dependent 6-phosphofructokinase, prokaryotic|ATP-dependent 6-phosphofructokinase, prokaryotic-type|Phosphofructokinase domain|Phosphofructokinase, conserved site GO:0003872|GO:0005524|GO:0006002|GO:0006096|GO:0008443 G3DSA:3.40.50.450|MF_00339|PF00365|PIRSF000532|PR00476|PS00433|SSF53784|TIGR02482 NJ56_RS05785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002524|IPR023783|IPR027470 Cation efflux protein|Cation efflux protein, cytoplasmic domain|Cation efflux pump FieF GO:0006812|GO:0006829|GO:0008324|GO:0015684|GO:0016021|GO:0046873|GO:0055085 G3DSA:1.20.1510.10|G3DSA:3.30.70.1350|MF_01425|PF01545|PF16916|SSF160240|SSF161111|TIGR01297 NJ56_RS05790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012899 LTXXQ motif family protein GO:0042597 PF07813|PIRSF034445 NJ56_RS05795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 NJ56_RS05800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR032404 HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor protein CpxA, periplasmic domain GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PF16527|PR00344|SM00304|SM00387|SM00388|SSF47384|SSF55874 NJ56_RS05805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001537|IPR016914|IPR029026|IPR029028 Alpha/beta knot methyltransferases|tRNA (cytidine/uridine-2'-O-)-methyltransferase|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0001510|GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.40.1280.10|MF_01885|PF00588|PIRSF029256|SSF75217|TIGR00185 NJ56_RS05810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001451|IPR005881|IPR010493|IPR011004|IPR018357 Hexapeptide repeat|Hexapeptide transferase, conserved site|Serine O-acetyltransferase|Serine acetyltransferase, N-terminal|Trimeric LpxA-like GO:0005737|GO:0006535|GO:0009001|GO:0016740 G3DSA:1.10.3130.10|G3DSA:2.160.10.10|PF00132|PF06426|PIRSF000441|PS00101|SM00971|SSF51161|TIGR01172 NJ56_RS05815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006109|IPR006168|IPR008927|IPR011128|IPR013328|IPR016040 6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Glycerol-3-phosphate dehydrogenase, NAD-dependent|Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal|Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal|NAD(P)-binding domain GO:0004367|GO:0005975|GO:0006072|GO:0009331|GO:0016491|GO:0016616|GO:0046168|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|MF_00394|PF01210|PF07479|PIRSF000114|PR00077|PS00957|SSF48179|SSF51735 NJ56_RS05820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 G3DSA:3.10.420.10|MF_00821|PF02556|PR01594|SSF54611|TIGR00809 NJ56_RS05825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002109|IPR011767|IPR011900|IPR012336|IPR014025 Glutaredoxin|Glutaredoxin active site|Glutaredoxin subgroup|Glutaredoxin, GrxC|Thioredoxin-like fold GO:0009055|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00462|PR00160|PS00195|SSF52833|TIGR02181 NJ56_RS05830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001763 Rhodanese-like domain G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 NJ56_RS05835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005995|IPR006124|IPR011258|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|BPG-independent PGAM, N-terminal|Metalloenzyme|Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0003824|GO:0004619|GO:0005737|GO:0006007|GO:0008152|GO:0030145|GO:0046872 G3DSA:3.40.1450.10|G3DSA:3.40.720.10|MF_01038|PF01676|PF06415|PIRSF001492|SSF53649|SSF64158|TIGR01307 NJ56_RS05840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011055|IPR016047 Duplicated hybrid motif|Peptidase M23 G3DSA:1.20.5.730|G3DSA:2.70.70.10|PF01551|SSF51261 NJ56_RS05845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006837|IPR011330 Divergent polysaccharide deacetylase|Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 G3DSA:3.20.20.370|PF04748|SSF88713 NJ56_RS05850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002328|IPR004627|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like|L-threonine 3-dehydrogenase|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain GO:0006567|GO:0008270|GO:0008743|GO:0016491|GO:0055114 G3DSA:3.40.50.10730|G3DSA:3.90.180.10|MF_00627|PF00107|PF08240|PS00059|SM00829|SSF50129|SSF51735|TIGR00692 NJ56_RS05855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001917|IPR004839|IPR011282|IPR015421|IPR015422|IPR015424 2-amino-3-ketobutyrate coenzyme A ligase|Aminotransferase, class I/classII|Aminotransferase, class-II, pyridoxal-phosphate binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0006567|GO:0008152|GO:0008890|GO:0009058|GO:0016740|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00985|PF00155|PS00599|SSF53383|TIGR01822 NJ56_RS05860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001509|IPR011912|IPR016040 ADP-L-glycero-D-manno-heptose-6-epimerase|NAD(P)-binding domain|NAD-dependent epimerase/dehydratase GO:0003824|GO:0005975|GO:0008712|GO:0050661|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|MF_01601|PF01370|SSF51735|TIGR02197 NJ56_RS05865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002201|IPR011910 ADP-heptose--LPS heptosyltransferase 2|Glycosyl transferase, family 9 GO:0008152|GO:0009103|GO:0016757 G3DSA:3.40.50.2000|PF01075|SSF53756|TIGR02195 NJ56_RS05870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002201|IPR011908 Glycosyl transferase, family 9|Lipopolysaccharide heptosyltransferase I GO:0008152|GO:0008920|GO:0009244|GO:0016757 G3DSA:3.40.50.2000|PF01075|SSF53756|TIGR02193 NJ56_RS05875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001296|IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal|Glycosyl transferase, family 1 G3DSA:3.40.50.2000|PF00534|PF04413|SSF53756 NJ56_RS05880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 NJ56_RS05885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001980|IPR004821|IPR014729 Cytidyltransferase-like domain|Phosphopantetheine adenylyltransferase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0004595|GO:0009058|GO:0015937 G3DSA:3.40.50.620|MF_00151|PD016147|PF01467|PR01020|SSF52374|TIGR00125|TIGR01510 NJ56_RS05890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010663|IPR010979|IPR012319|IPR015886|IPR015887|IPR020629 DNA glycosylase/AP lyase, H2TH DNA-binding|DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site|Formamidopyrimidine-DNA glycosylase|Formamidopyrimidine-DNA glycosylase, catalytic domain|Ribosomal protein S13-like, H2TH|Zinc finger, FPG/IleRS-type GO:0003676|GO:0003677|GO:0003684|GO:0003906|GO:0006281|GO:0006284|GO:0006289|GO:0008270|GO:0008534|GO:0016799 G3DSA:1.10.8.50|G3DSA:3.20.190.10|MF_00103|PF01149|PF06827|PF06831|PS01242|SM00898|SM01232|SSF46946|SSF57716|SSF81624|TIGR00577 NJ56_RS05895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001705|IPR011332|IPR018264 Ribosomal protein L33|Ribosomal protein L33, conserved site|Zinc-binding ribosomal protein GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00294|PF00471|PS00582|SSF57829|TIGR01023 NJ56_RS05900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001383|IPR026569|IPR034704 L28p-like|Ribosomal protein L28|Ribosomal protein L28/L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.170.40|MF_00373|PF00830|SSF143800|TIGR00009 NJ56_RS05910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001405|IPR010994|IPR020891|IPR022820|IPR025657 RadC protein|RadC-like JAB domain|RuvA domain 2-like|Uncharacterised protein family UPF0758, YicR subfamily|Uncharacterised protein family UPF0758, conserved site G3DSA:1.10.150.20|G3DSA:3.40.140.10|MF_00018|PF04002|PS01302|SSF47781|TIGR00608 NJ56_RS05915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003382|IPR005252|IPR007085 Coenzyme A biosynthesis bifunctional protein CoaBC|DNA/pantothenate metabolism flavoprotein, C-terminal|Flavoprotein GO:0003824|GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 G3DSA:3.40.50.10300|G3DSA:3.40.50.1950|PF02441|PF04127|SSF102645|SSF52507|TIGR00521 NJ56_RS05920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008181|IPR029054 Deoxyuridine triphosphate nucleotidohydrolase|dUTPase-like GO:0004170|GO:0046080 G3DSA:2.70.40.10|MF_00116|PF00692|SSF51283|TIGR00576 NJ56_RS05925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001647|IPR009057|IPR011075|IPR023769|IPR023772 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox domain-like|Nucleoid occlusion factor SlmA|Tetracycline transcriptional regulator, TetR-related, C-terminal GO:0003677|GO:0010974 G3DSA:1.10.10.60|G3DSA:1.10.357.10|MF_01839|PF00440|PS01081|SSF46689|SSF48498 NJ56_RS05930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000836|IPR004467|IPR023031|IPR029057 Orotate phosphoribosyl transferase domain|Orotate phosphoribosyltransferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0004588|GO:0006221|GO:0009116 G3DSA:3.40.50.2020|MF_01208|PF00156|SSF53271|TIGR00336 NJ56_RS05935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001247|IPR002381|IPR015847|IPR018336|IPR020568|IPR027408 Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|PNPase/RNase PH domain|Ribonuclease PH, bacterial-type|Ribonuclease PH, conserved site|Ribosomal protein S5 domain 2-type fold GO:0000049|GO:0008033|GO:0009022 G3DSA:3.30.230.70|MF_00564|PF01138|PF03725|PS01277|SSF54211|SSF55666|TIGR01966 NJ56_RS05940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005229|IPR013527|IPR013551 Conserved hypothetical protein CHP00255|Domain of unknown function DUF1732|YicC-like, N-terminal PF03755|PF08340|TIGR00255 NJ56_RS05945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 PF03595 NJ56_RS05950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS05955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR000160|IPR001633|IPR029787 EAL domain|GGDEF domain|Nucleotide cyclase|PAS domain G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF13426|SM00052|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254 NJ56_RS05960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001753|IPR029045 ClpP/crotonase-like domain|Crotonase superfamily GO:0003824|GO:0008152 G3DSA:3.90.226.10|PF00378|SSF52096 NJ56_RS05965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002668|IPR011657 Concentrative nucleoside transporter C-terminal domain|Concentrative nucleoside transporter N-terminal domain PF01773|PF07662 NJ56_RS05970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021957 Protein of unknown function DUF3574 PF12098 NJ56_RS05980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005115 Uncharacterised domain UPF0126 PF03458 NJ56_RS05985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004150|IPR010994|IPR012340|IPR013839|IPR013840|IPR020923|IPR033136 DNA ligase B|NAD-dependent DNA ligase, N-terminal|NAD-dependent DNA ligase, OB-fold|NAD-dependent DNA ligase, adenylation|NAD-dependent DNA ligase, conserved site|Nucleic acid-binding, OB-fold|RuvA domain 2-like GO:0003911|GO:0006259|GO:0006260|GO:0006281 G3DSA:1.10.150.20|G3DSA:1.10.287.610|G3DSA:2.40.50.140|G3DSA:3.30.1490.70|G3DSA:3.30.470.30|MF_01587|PF01653|PF03120|PS01056|SM00532|SSF47781|SSF50249|SSF56091 NJ56_RS05990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008145|IPR017665|IPR020590|IPR027417 Guanylate kinase|Guanylate kinase, conserved site|Guanylate kinase/L-type calcium channel beta subunit|P-loop containing nucleoside triphosphate hydrolase GO:0004385|GO:0006163 G3DSA:3.30.63.10|G3DSA:3.40.50.300|MF_00328|PF00625|PS00856|SM00072|SSF52540|TIGR03263 NJ56_RS05995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003716|IPR006110|IPR012293 DNA-directed RNA polymerase, omega subunit|RNA polymerase subunit, RPB6/omega|RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 G3DSA:3.90.940.10|MF_00366|PF01192|SM01409|SSF63562|TIGR00690 NJ56_RS06000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676 ACT domain|Beta-grasp domain|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like GO:0015969 G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|SM00471|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691 NJ56_RS06005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001537|IPR022724|IPR029026|IPR029028|IPR033671 Alpha/beta knot methyltransferases|RNA methyltransferase, SpoU/TrmH type, C-terminal|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA (guanosine(18)-2'-O)-methyltransferase|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008168|GO:0008173|GO:0009020|GO:0030488 G3DSA:3.40.1280.10|MF_02060|PF00588|PF12105|SSF75217 NJ56_RS06010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001650|IPR004609|IPR011545|IPR012340|IPR014001|IPR027417|IPR033454 ATP-dependent DNA helicase RecG|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|RecG, wedge domain GO:0003676|GO:0004003|GO:0005524|GO:0006281|GO:0006310 G3DSA:1.10.150.20|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00270|PF00271|PF17191|SM00487|SM00490|SSF50249|SSF52540|TIGR00643 NJ56_RS06015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 MF_02062|PF03616|TIGR00210 NJ56_RS06020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006042|IPR006043|IPR017588 Uric acid permease UacT-like|Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0016021|GO:0055085 PF00860|PS01116|TIGR00801|TIGR03173 NJ56_RS06025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007844 AsmA PF05170 NJ56_RS06030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR012660|IPR016181|IPR029069 Acyl-CoA N-acyltransferase|GNAT domain|HotDog domain|Thioesterase, putative GO:0008080 G3DSA:3.10.129.10|G3DSA:3.40.630.30|PF00583|PF09500|SSF54637|SSF55729|TIGR02447 NJ56_RS06035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003732|IPR023509 D-Tyr tRNAtyr deacylase-like domain|D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 G3DSA:3.50.80.10|MF_00518|PF02580|SSF69500|TIGR00256 NJ56_RS06040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017039|IPR023679 Uncharacterised protein family UPF0761, bacterial|Virulence factor BrkB MF_00672|PF03631|PIRSF035875|TIGR00765 NJ56_RS06045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006439|IPR023198|IPR023214 HAD hydrolase, subfamily IA|HAD-like domain|Phosphoglycolate phosphatase, domain 2 GO:0008152|GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|PR00413|SSF56784|TIGR01509 NJ56_RS06050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000640|IPR000795|IPR004161|IPR005225|IPR006298|IPR009000|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|GTP-binding protein TypA|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:2.40.50.250|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|PF00009|PF00679|PF03144|PR00315|PS00301|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01394 NJ56_RS06055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001637|IPR004809|IPR008146|IPR008147|IPR014746|IPR027302|IPR027303 Glutamine synthetase class-I, adenylation site|Glutamine synthetase type I|Glutamine synthetase, N-terminal conserved site|Glutamine synthetase, beta-Grasp domain|Glutamine synthetase, catalytic domain|Glutamine synthetase, glycine-rich site|Glutamine synthetase/guanido kinase, catalytic domain GO:0003824|GO:0004356|GO:0005737|GO:0006542|GO:0006807|GO:0009399 G3DSA:3.10.20.70|G3DSA:3.30.590.10|PF00120|PF03951|PS00180|PS00181|PS00182|SM01230|SSF54368|SSF55931|TIGR00653 NJ56_RS06065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR003594|IPR003661|IPR004358|IPR013767 Histidine kinase-like ATPase, C-terminal domain|PAS domain|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0006355|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF00989|PF02518|PR00344|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874 NJ56_RS06070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR010114|IPR011006|IPR025662|IPR025943|IPR025944|IPR027417 AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox domain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, nitrogen regulation NR(I)|Signal transduction response regulator, receiver domain GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0006808|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|SM00382|SM00448|SSF46689|SSF52172|SSF52540|TIGR01818 NJ56_RS06075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004558|IPR006638|IPR007197|IPR010723|IPR013785 Aldolase-type TIM barrel|Elongator protein 3/MiaB/NifB|HemN, C-terminal|Oxygen-independent coproporphyrinogen III oxidase HemN|Radical SAM GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114 G3DSA:3.20.20.70|PF04055|PF06969|PIRSF000167|SM00729|SSF102114|TIGR00538 NJ56_RS06085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007336 Der GTPase activator GO:0005096 MF_01058|PF04220 NJ56_RS06090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006073|IPR019987|IPR027417 GTP binding domain|GTP-binding protein, ribosome biogenesis, YsxC|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.300|MF_00321|PF01926|SSF52540|TIGR03598 NJ56_RS06095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001098|IPR002298|IPR002421|IPR002562|IPR008918|IPR012337|IPR018320|IPR019760|IPR020045|IPR020046|IPR029060 3'-5' exonuclease domain|5'-3' exonuclease, C-terminal domain|5'-3' exonuclease, N-terminal|5'-3' exonuclease, alpha-helical arch, N-terminal|DNA polymerase 1|DNA polymerase A|DNA-directed DNA polymerase, family A, conserved site|DNA-directed DNA polymerase, family A, palm domain|Helix-hairpin-helix motif, class 2|PIN domain-like|Ribonuclease H-like domain GO:0003676|GO:0003677|GO:0003824|GO:0003887|GO:0006139|GO:0006260|GO:0006261|GO:0008408 G3DSA:1.10.150.20|G3DSA:1.20.1060.10|G3DSA:3.30.420.10|G3DSA:3.30.70.370|G3DSA:3.40.50.1010|PF00476|PF01367|PF01612|PF02739|PR00868|PS00447|SM00279|SM00474|SM00475|SM00482|SSF47807|SSF53098|SSF56672|SSF88723|TIGR00593 NJ56_RS06100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001853|IPR012336|IPR017937|IPR023205 DSBA-like thioredoxin domain|Thiol:disulphide interchange protein DsbA/DsbL|Thioredoxin, conserved site|Thioredoxin-like fold GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF01323|PIRSF001488|PS00194|SSF52833 NJ56_RS06105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002575|IPR011009|IPR032882 Aminoglycoside phosphotransferase|Protein kinase-like domain|SrkA/RdoA protein kinase GO:0004674|GO:0006468 G3DSA:3.30.200.20|G3DSA:3.90.1200.10|MF_01497|PF01636|SSF56112 NJ56_RS06110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009383 Protein of unknown function DUF1040 PD029038|PF06288 NJ56_RS06115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013482|IPR025877|IPR029044 MobA-like NTP transferase|Molybdenum cofactor guanylyltransferase|Nucleotide-diphospho-sugar transferases GO:0003824|GO:0006777 G3DSA:3.90.550.10|MF_00316|PF12804|SSF53448|TIGR02665 NJ56_RS06120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004435|IPR027417 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain|P-loop containing nucleoside triphosphate hydrolase GO:0005525|GO:0006777 G3DSA:3.40.50.300|PF03205|SSF52540|TIGR00176 NJ56_RS06145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000524|IPR008920|IPR011711|IPR011991 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 NJ56_RS06150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PR00036|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS06155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002139|IPR002173|IPR011611|IPR011877|IPR029056 Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Ribokinase|Ribokinase-like|Ribokinase/fructokinase GO:0004747|GO:0006014|GO:0016301|GO:0016773 G3DSA:3.40.1190.20|MF_01987|PF00294|PR00990|PS00584|SSF53613|TIGR02152 NJ56_RS06160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025997|IPR028082 Periplasmic binding protein|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13407|SSF53822 NJ56_RS06165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001851|IPR035568 ABC transporter, FecCD/TroCD-like|ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 G3DSA:1.10.3470.10|PF02653 NJ56_RS06170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS06175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007721|IPR023064|IPR023750 D-ribose pyranase|D-ribose pyranase RbsD/L-fucose mutarotase FucU|RbsD-like domain GO:0005996|GO:0016853|GO:0016872|GO:0048029 G3DSA:3.40.1650.10|MF_01661|PF05025|SSF102546 NJ56_RS06180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003855|IPR023051 Potassium transporter|Potassium uptake protein, low affinity, Kup GO:0015079|GO:0016020|GO:0071805 MF_01522|PF02705|TIGR00794 NJ56_RS06185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR011704|IPR022547|IPR023671|IPR027417 AAA+ ATPase domain|ATPase RavA|ATPase, RavA, C-terminal|ATPase, dynein-related, AAA domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0016820|GO:0016887 G3DSA:3.40.50.300|MF_01625|PF07728|PF12592|SM00382|SSF52540 NJ56_RS06190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002035|IPR008912|IPR023481 Uncharacterised protein family CoxE-like|Uncharacterised protein family ViaA|von Willebrand factor, type A G3DSA:3.40.50.410|MF_01626|PF05762|SM00327|SSF53300 NJ56_RS06200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 G3DSA:3.30.930.10|MF_00555|PF03590|PIRSF001555|SSF55681|TIGR00669 NJ56_RS06205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000485|IPR011008|IPR011991|IPR019885|IPR019887|IPR019888 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PS00519|SM00344|SSF46785|SSF54909 NJ56_RS06210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001094|IPR008254|IPR029039 Flavodoxin-like|Flavodoxin/nitric oxide synthase|Flavoprotein-like domain GO:0010181|GO:0055114 G3DSA:3.40.50.360|PF00258|PR00369|SSF52218 NJ56_RS06220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002218|IPR004416|IPR020595|IPR023753|IPR026904 FAD/NAD(P)-binding domain|GidA associated domain 3|MnmG-related, conserved site|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0002098|GO:0008033|GO:0016491|GO:0050660|GO:0055114 G3DSA:3.50.50.60|MF_00129|PF01134|PF13932|PS01280|PS01281|SM01228|SSF51905|TIGR00136 NJ56_RS06225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003682|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 G3DSA:3.40.50.150|MF_00074|PF02527|PIRSF003078|SSF53335|TIGR00138 NJ56_RS06230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005598 ATP synthase protein I PF03899 NJ56_RS06235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000568|IPR023011 ATP synthase, F0 complex, subunit A|ATP synthase, F0 complex, subunit A, active site GO:0015078|GO:0015986|GO:0045263 G3DSA:1.20.120.220|MF_01393|PF00119|PR00123|PS00449|SSF81336|TIGR01131 NJ56_RS06240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000454|IPR002379|IPR005953|IPR020537 ATP synthase, F0 complex, subunit C|ATP synthase, F0 complex, subunit C, DCCD-binding site|ATP synthase, F0 complex, subunit C, bacterial/chloroplast|V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015986|GO:0015991|GO:0033177|GO:0045263 G3DSA:1.20.20.10|MF_01396|PF00137|PR00124|PS00605|SSF81333|TIGR01260 NJ56_RS06245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002146|IPR005864|IPR028987 ATP synthase, F0 complex, subunit b, bacterial|ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast|F-type ATP synthase subunit B-like, membrane domain GO:0015078|GO:0015986|GO:0045263 G3DSA:1.20.5.620|MF_01398|PF00430|SSF81573|TIGR01144 NJ56_RS06250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000711|IPR020781|IPR026015 ATPase, OSCP/delta subunit|ATPase, OSCP/delta subunit, conserved site|F1F0 ATP synthase OSCP/delta subunit, N-terminal domain GO:0015986|GO:0016020|GO:0046933 G3DSA:1.10.520.20|MF_01416|PF00213|PR00125|PS00389|SSF47928|TIGR01145 NJ56_RS06255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000194|IPR000793|IPR004100|IPR005294|IPR020003|IPR023366|IPR027417 ATP synthase subunit alpha-like domain|ATP synthase, F1 complex, alpha subunit|ATP synthase, alpha subunit, C-terminal|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015986|GO:0015992|GO:0045261|GO:0046034|GO:0046933 G3DSA:1.20.150.20|G3DSA:2.40.30.20|G3DSA:3.40.50.300|MF_01346|PF00006|PF00306|PF02874|PIRSF039088|PS00152|SSF47917|SSF50615|SSF52540|TIGR00962 NJ56_RS06260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000131|IPR023632 ATP synthase, F1 complex, gamma subunit|ATP synthase, F1 complex, gamma subunit conserved site GO:0015986|GO:0045261|GO:0046933 G3DSA:1.10.287.80|G3DSA:3.40.1380.10|MF_00815|PF00231|PR00126|PS00153|SSF52943|TIGR01146 NJ56_RS06270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000194|IPR003593|IPR004100|IPR005722|IPR020003|IPR024034|IPR027417 AAA+ ATPase domain|ATP synthase, F1 complex, beta subunit|ATPase, F1/V1 complex, beta/alpha subunit, C-terminal|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015986|GO:0015992|GO:0045261|GO:0046034|GO:0046933 G3DSA:1.10.1140.10|G3DSA:2.40.10.170|G3DSA:3.40.50.300|MF_01347|PF00006|PF02874|PS00152|SM00382|SSF47917|SSF50615|SSF52540|TIGR01039 NJ56_RS06275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001469|IPR020546|IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain|ATP synthase, F1 complex, delta/epsilon subunit|ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933 G3DSA:1.20.5.440|G3DSA:2.60.15.10|MF_00530|PD000944|PF00401|PF02823|SSF46604|SSF51344|TIGR01216 NJ56_RS06280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001451|IPR005882|IPR011004|IPR018357|IPR025877|IPR029044 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase|Hexapeptide repeat|Hexapeptide transferase, conserved site|MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases|Trimeric LpxA-like GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0016740|GO:0019134 G3DSA:2.160.10.10|G3DSA:3.90.550.10|MF_01631|PF00132|PF12804|PS00101|SSF51161|SSF53448|TIGR01173 NJ56_RS06285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001347|IPR005855|IPR029055 Glucosamine-fructose-6-phosphate aminotransferase, isomerising|Nucleophile aminohydrolases, N-terminal|Sugar isomerase (SIS) GO:0004360|GO:0097367|GO:1901135|GO:1901137 G3DSA:3.40.50.10490|G3DSA:3.60.20.10|MF_00164|PF01380|PF13522|SSF53697|SSF56235|TIGR01135 NJ56_RS06290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005673|IPR024370 PBP domain|Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 G3DSA:3.40.190.10|PF12849|PIRSF002756|SSF53850|TIGR00975 NJ56_RS06295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR011864 ABC transporter type 1, transmembrane domain MetI-like|Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006810|GO:0006817|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR02138 NJ56_RS06300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR005672 ABC transporter type 1, transmembrane domain MetI-like|Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0006810|GO:0016020|GO:0035435 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00974 NJ56_RS06305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR005670|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Phosphate transport system permease protein 1 GO:0005315|GO:0005524|GO:0016020|GO:0016887|GO:0035435 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR00972 NJ56_RS06310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026022|IPR028366 PhoU domain|Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 G3DSA:1.20.58.220|PF01895|PIRSF003107|SSF109755|TIGR02135 NJ56_RS06315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001638|IPR018313 Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SSF53850 NJ56_RS06320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS06325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS06330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006043|IPR026033 Purine permease PbuG-like|Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PF00860|PIRSF005353 NJ56_RS06335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003660|IPR004089|IPR033479 Double Cache domain 1|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.1060|G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF02743|SM00283|SM00304|SSF58104 NJ56_RS06340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS06345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001829|IPR008962|IPR013783|IPR016147|IPR016148|IPR018046 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, C-terminal|Pili assembly chaperone, N-terminal|Pili assembly chaperone, bacterial|Pili assembly chaperone, conserved site GO:0030288|GO:0043711|GO:0061077|GO:0071555 G3DSA:2.60.40.10|PF00345|PF02753|PR00969|PS00635|SSF49354|SSF49584 NJ56_RS06350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR018030|IPR025885|IPR025949 Fimbrial membrane usher, conserved site|Outer membrane usher protein|PapC, N-terminal domain|PapC-like, C-terminal domain GO:0005215|GO:0005515|GO:0006810|GO:0016020 PF00577|PF13953|PF13954|PS01151|SSF141729 NJ56_RS06355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS06360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004520|IPR005225|IPR006073|IPR018948|IPR025867|IPR027417 GTP binding domain|GTP-binding protein TrmE, N-terminal|MnmE, helical domain|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 G3DSA:1.20.120.430|G3DSA:3.30.1360.120|MF_00379|PF01926|PF10396|PF12631|SSF116878|SSF52540|TIGR00231|TIGR00450 NJ56_RS06365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001708|IPR019998|IPR028053|IPR028055 Membrane insertase OXA1/ALB3/YidC|Membrane insertase YidC|Membrane insertase YidC, N-terminal|Membrane insertase YidC/Oxa1, C-terminal GO:0016021|GO:0051205 MF_01810|PF02096|PF14849|PR00701|PR01900|TIGR03592|TIGR03593 NJ56_RS06370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002696 Putative membrane protein insertion efficiency factor MF_00386|PD004225|PF01809|SM01234|TIGR00278 NJ56_RS06375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000100|IPR014721|IPR020539|IPR020568 Ribonuclease P|Ribonuclease P, conserved site|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0000049|GO:0004526|GO:0008033 G3DSA:3.30.230.10|MF_00227|PD003629|PF00825|PS00648|SSF54211|TIGR00188 NJ56_RS06380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000271|IPR020939 Ribosomal protein L34|Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00391|PD003101|PF00468|PS00784|TIGR01030 NJ56_RS06390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001957|IPR003593|IPR010921|IPR013159|IPR013317|IPR018312|IPR020591|IPR024633|IPR027417 AAA+ ATPase domain|Chromosomal replication control, initiator DnaA|Chromosomal replication control, initiator DnaA, conserved site|Chromosomal replication control, initiator DnaA-like|Chromosomal replication initiator protein DnaA|Chromosomal replication initiator, DnaA C-terminal|DnaA N-terminal domain|P-loop containing nucleoside triphosphate hydrolase|Trp repressor/replication initiator GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275|GO:0043565 G3DSA:1.10.1750.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00377|PF00308|PF08299|PF11638|PR00051|PS01008|SM00382|SM00760|SSF48295|SSF52540|TIGR00362 NJ56_RS06395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001001|IPR022634|IPR022635|IPR022637 DNA polymerase III, beta chain|DNA polymerase III, beta chain, C-terminal|DNA polymerase III, beta chain, N-terminal|DNA polymerase III, beta chain, central GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 G3DSA:3.10.150.10|PF00712|PF02767|PF02768|PIRSF000804|SM00480|SSF55979|TIGR00663 NJ56_RS06400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001238|IPR003395|IPR018078|IPR027417 DNA-binding, RecF|DNA-binding, RecF, conserved site|P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal GO:0003697|GO:0005524|GO:0006281 G3DSA:3.40.50.300|MF_00365|PF02463|PS00617|PS00618|SSF52540|TIGR00611 NJ56_RS06405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000565|IPR001241|IPR002288|IPR003594|IPR006171|IPR011557|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568 DNA gyrase B subunit, C-terminal|DNA gyrase, subunit B|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, central domain|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain|Histidine kinase-like ATPase, C-terminal domain|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|TOPRIM domain GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_01898|PF00204|PF00986|PF01751|PF02518|PR00418|PR01159|PS00177|SM00387|SM00433|SSF54211|SSF55874|SSF56719|TIGR01059 NJ56_RS06410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000150|IPR006379|IPR023214 Cof family|HAD-like domain|HAD-superfamily hydrolase, subfamily IIB GO:0016787 G3DSA:3.40.50.1000|PF08282|PS01228|PS01229|SSF56784|TIGR00099|TIGR01484 NJ56_RS06415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002469|IPR022223 Dipeptidylpeptidase IV, N-terminal domain|Protein of unknown function DUF3748 GO:0006508 G3DSA:2.140.10.30|PF00930|PF12566|SSF82171 NJ56_RS06420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010780 Protein of unknown function DUF1375 PF07119 NJ56_RS06425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002068|IPR008978 Alpha crystallin/Hsp20 domain|HSP20-like chaperone G3DSA:2.60.40.790|PF00011|SSF49764 NJ56_RS06430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002068|IPR008978|IPR022848 Alpha crystallin/Hsp20 domain|HSP20-like chaperone|Small heat shock protein IbpB G3DSA:2.60.40.790|MF_02001|PF00011|SSF49764 NJ56_RS06435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006037|IPR006512|IPR023018 Regulator of K+ conductance, C-terminal|Transport protein YidE, putative|YidE/YbjL duplication GO:0006813|GO:0008324 G3DSA:3.30.70.1450|MF_01016|PF02080|PF06826|SSF116726|TIGR01625 NJ56_RS06440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 NJ56_RS06445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006664|IPR006665 OmpA-like domain|Outer membrane protein, bacterial GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PF13488|PR01021|PR01023|SSF103088 NJ56_RS06450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:3.40.630.30 NJ56_RS06455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001064|IPR011024|IPR016181 Acyl-CoA N-acyltransferase|Beta/gamma crystallin|Gamma-crystallin-related G3DSA:2.60.20.10|G3DSA:3.40.630.30|PF00030|SSF49695|SSF55729 NJ56_RS06460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF13673|SSF55729 NJ56_RS06465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004597|IPR005019|IPR011257 DNA glycosylase|DNA-3-methyladenine glycosylase I|Methyladenine glycosylase GO:0003824|GO:0006281|GO:0006284|GO:0008725 G3DSA:1.10.340.30|PF03352|SSF48150|TIGR00624 NJ56_RS06475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 G3DSA:1.20.58.180|G3DSA:3.30.930.10|MF_00254|PF02091|PR01044|SSF55681|TIGR00388 NJ56_RS06480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008909|IPR009080|IPR015944 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|DALR anticodon binding|Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004812|GO:0004814|GO:0004820|GO:0005524|GO:0005737|GO:0006418|GO:0006420|GO:0006426 G3DSA:1.10.730.10|MF_00255|PF02092|PF05746|PR01045|SSF109604|TIGR00211 NJ56_RS06485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021413 Protein of unknown function DUF3053 G3DSA:1.20.5.420|PF11254 NJ56_RS06490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR007893 Fimbrial-type adhesion domain|Spore coat protein U GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF05229 NJ56_RS06495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR025949 Outer membrane usher protein|PapC-like, C-terminal domain GO:0005215|GO:0006810|GO:0016020 PF00577|PF13953 NJ56_RS06500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008962|IPR013783|IPR016147 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 G3DSA:2.60.40.10|PF00345|SSF49354 NJ56_RS06505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007893 Spore coat protein U PF05229|SM00972 NJ56_RS06510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007893 Spore coat protein U PF05229 NJ56_RS06515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002178|IPR003352|IPR003501|IPR004718|IPR016152 PTS EIIA type-2 domain|Phosphotransferase system, EIIB component, type 2/3|Phosphotransferase system, EIIC|Phosphotransferase system, mannitol-specific enzyme IIC|Phosphotransferase/anion transporter GO:0005215|GO:0006810|GO:0008982|GO:0009401|GO:0016020|GO:0016021 G3DSA:3.40.50.2300|G3DSA:3.40.930.10|PF00359|PF02302|PF02378|PS00372|SSF52794|SSF55804|TIGR00851 NJ56_RS06520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000669|IPR008927|IPR013118|IPR013131|IPR013328|IPR016040|IPR023027|IPR023028 6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Mannitol dehydrogenase|Mannitol dehydrogenase, C-terminal|Mannitol dehydrogenase, N-terminal|Mannitol dehydrogenase, conserved site|Mannitol-1-phosphate 5-dehydrogenase|NAD(P)-binding domain GO:0003824|GO:0008152|GO:0008926|GO:0016491|GO:0019594|GO:0050662|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|MF_00196|PF01232|PF08125|PR00084|PS00974|SSF48179|SSF51735 NJ56_RS06525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007761 Mannitol repressor MtlR-like G3DSA:1.20.120.330|PF05068|SSF158668 NJ56_RS06530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021230 Protein of unknown function DUF2810 G3DSA:1.20.58.300|PF10928 NJ56_RS06535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005163|IPR005302|IPR011037 3-alpha domain|Molybdenum cofactor sulfurase, C-terminal|Pyruvate kinase-like, insert domain GO:0003824|GO:0030151|GO:0030170 G3DSA:2.40.33.20|PF03473|PF03475|SSF50800 NJ56_RS06540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003660|IPR004089|IPR004090|IPR032255 Chemotaxis methyl-accepting receptor|HAMP domain|Helical bimodular sensor domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|PF16591|PR00260|SM00283|SM00304|SM01358|SSF58104 NJ56_RS06545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001189|IPR019831|IPR019832|IPR019833 Manganese/iron superoxide dismutase|Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, N-terminal|Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:1.10.287.990|PF00081|PF02777|PIRSF000349|PR01703|PS00088|SSF46609|SSF54719 NJ56_RS06550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003786|IPR016193 Cytidine deaminase-like|Sulfur carrier protein FdhD GO:0003824|GO:0016783 G3DSA:3.10.20.10|G3DSA:3.40.140.10|MF_00187|PF02634|PIRSF015626|SSF53927|TIGR00129 NJ56_RS06555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006656|IPR006963|IPR027467 Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0016491|GO:0051539|GO:0055114 G3DSA:2.20.25.90|G3DSA:3.40.50.740|PF00384|PF04879|PS00551|SM00926|SSF53706 NJ56_RS06560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006443|IPR006655|IPR006656|IPR006657|IPR009010 Aspartate decarboxylase-like domain|Formate dehydrogenase-N, alpha subunit|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0008863|GO:0009055|GO:0016491|GO:0030151|GO:0043546|GO:0045333|GO:0047111|GO:0055114 G3DSA:2.40.40.20|G3DSA:3.40.228.10|PF00384|PF01568|PS00932|SSF50692|SSF53706|TIGR01553 NJ56_RS06565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006470|IPR014603|IPR015246|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Formate dehydrogenase iron-sulphur subunit|Formate dehydrogenase iron-sulphur subunit, Proteobacteria|Formate dehydrogenase, transmembrane GO:0015944|GO:0016021|GO:0045333|GO:0051539 G3DSA:1.20.5.480|G3DSA:3.30.70.20|PF09163|PF13247|PIRSF036298|PS00198|SSF54862|TIGR01582 NJ56_RS06570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006471|IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane|Formate dehydrogenase, gamma subunit GO:0008863|GO:0009055|GO:0009326|GO:0016020|GO:0016021|GO:0022904|GO:0045333 G3DSA:1.20.950.20|PF01292|SSF81342|TIGR01583 NJ56_RS06575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006452|IPR024064 FdhE-like|Formate dehydrogenase accessory protein GO:0005737 G3DSA:3.90.1670.10|MF_00611|PF04216|PIRSF018296|SSF144020|TIGR01562 NJ56_RS06580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004534|IPR015421|IPR015424|IPR018319|IPR025862 L-seryl-tRNA selenium transferase N-terminal domain|L-seryl-tRNA selenium transferase-like|L-seryl-tRNA(Sec) selenium transferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0001514|GO:0003824|GO:0004125|GO:0005737 G3DSA:3.40.640.10|MF_00423|PF03841|PF12390|SSF53383|TIGR00474 NJ56_RS06585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000795|IPR004535|IPR009000|IPR009001|IPR011991|IPR015190|IPR015191|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor SelB, winged helix, type 2|Translation elongation factor SelB, winged helix, type 3|Translation elongation factor, selenocysteine-specific|Translation protein, beta-barrel domain|Winged helix-turn-helix DNA-binding domain GO:0001514|GO:0003723|GO:0003746|GO:0003924|GO:0005525|GO:0005737 G3DSA:1.10.10.10|G3DSA:2.40.30.10|G3DSA:3.40.50.300|PF00009|PF09106|PF09107|PR00315|PS00301|SSF46785|SSF50447|SSF50465|SSF52540|TIGR00475 NJ56_RS06590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000755|IPR009045 D-alanyl-D-alanine dipeptidase|Hedgehog signalling/DD-peptidase zinc-binding domain GO:0005618|GO:0006508|GO:0008237|GO:0016805 G3DSA:3.30.1380.10|MF_01924|PF01427|PIRSF026671|SSF55166 NJ56_RS06595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS06600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002656|IPR032905 Acyltransferase 3|O-acetyltransferase WecH GO:0009246|GO:0016413|GO:0016747 MF_01949|PF01757 NJ56_RS06605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025166 Integrase, DNA-binding domain PF13356 NJ56_RS06615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031339 Domain of unknown function DUF4942 PF13708 NJ56_RS06625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023636|IPR023637|IPR035085|IPR035400|IPR035401 Urocanase|Urocanase conserved site|Urocanase, C-terminal domain|Urocanase, N-terminal domain|Urocanase, Rossmann-like domain GO:0016153 G3DSA:3.40.1770.10|MF_00577|PF01175|PF17391|PF17392|PIRSF001423|PS01233|SSF111326|TIGR01228 NJ56_RS06630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001106|IPR005921|IPR008948|IPR022313|IPR024083 Aromatic amino acid lyase|Fumarase/histidase, N-terminal|Histidine ammonia-lyase|L-Aspartase-like|Phenylalanine/histidine ammonia-lyases, active site GO:0003824|GO:0004397|GO:0005737|GO:0006548|GO:0016841 G3DSA:1.10.275.10|G3DSA:1.20.200.10|MF_00229|PF00221|PS00488|SSF48557|TIGR01225 NJ56_RS06635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0003333|GO:0006810|GO:0006865|GO:0015171|GO:0016020|GO:0016021|GO:0055085 PF00324|PIRSF006060|PS00218 NJ56_RS06640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010406 Protein of unknown function DUF1003 PF06210 NJ56_RS06645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022742|IPR029058 Alpha/Beta hydrolase fold|Serine aminopeptidase, S33 G3DSA:3.40.50.1820|PF12146|SSF53474 NJ56_RS06650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000917|IPR012549|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Phosphoethanolamine transferase, N-terminal|Sulfatase, N-terminal GO:0003824|GO:0008152|GO:0008484|GO:0016021 G3DSA:3.40.720.10|PF00884|PF08019|SSF53649 NJ56_RS06655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR001789|IPR011006|IPR011991|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 NJ56_RS06660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR007895|IPR011712 Histidine kinase-like ATPase, C-terminal domain|MASE1|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 G3DSA:3.30.565.10|PF02518|PF05231|PF07730|SM00387|SSF55874 NJ56_RS06665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000849|IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain|Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PIRSF002808|SSF103473|TIGR00881 NJ56_RS06675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000914|IPR023765|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain|Solute-binding protein family 5, conserved site GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PS01040|SSF53850 NJ56_RS06680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS06685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR025966 ABC transporter type 1, transmembrane domain MetI-like|Oligopeptide transport permease C-like, N-terminal domain GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 NJ56_RS06690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 NJ56_RS06695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 NJ56_RS06700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017744 Cellulose biosynthesis protein BcsG PF11658|TIGR03368 NJ56_RS06705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019995 Cellulose biosynthesis, BcsF/YhjT PD053231|PF11120|TIGR03493 NJ56_RS06710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017745 Cellulose biosynthesis protein BcsE PF10995|TIGR03369 NJ56_RS06715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024487 Cellulose biosynthesis protein BcsR PD053230|PF10945 NJ56_RS06720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017746|IPR027417 Cellulose synthase operon protein BcsQ|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF06564|SSF52540|TIGR03371 NJ56_RS06725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR003919|IPR005150|IPR009875|IPR029044 Cellulose synthase|Cellulose synthase, subunit A|Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases|PilZ domain GO:0006011|GO:0016020|GO:0016759|GO:0016760|GO:0030244|GO:0035438 G3DSA:2.40.10.220|G3DSA:3.90.550.10|PF00535|PF03552|PF07238|PR01439|SSF141371|SSF53448|TIGR03030 NJ56_RS06730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003920|IPR018513 Cellulose synthase BcsB, bacterial|Cellulose synthase, subunit B GO:0006011|GO:0016020 PF03170|PR01440 NJ56_RS06735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002037|IPR008928 Glycoside hydrolase, family 8|Six-hairpin glycosidase-like GO:0003824|GO:0004553|GO:0005975 G3DSA:1.50.10.10|PF01270|PR00735|SSF48208 NJ56_RS06740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008410|IPR011250|IPR011990|IPR019734 Cellulose synthase operon C, C-terminal|Outer membrane protein/outer membrane enzyme PagP, beta-barrel|Tetratricopeptide repeat|Tetratricopeptide-like helical domain GO:0005515|GO:0016021|GO:0019867|GO:0030244 G3DSA:1.25.40.10|G3DSA:2.40.160.20|PF05420|PF13432|PF14559|SM00028|SSF48452 NJ56_RS06745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000160|IPR001633|IPR003660|IPR029787|IPR033419 EAL domain|GGDEF domain|Gammaproteobacterial periplasmic sensor domain GAPES3|HAMP domain|Nucleotide cyclase GO:0004871|GO:0007165|GO:0016021 G3DSA:3.20.20.450|G3DSA:3.30.70.270|PF00563|PF00672|PF00990|PF17154|SM00052|SM00267|SSF141868|SSF55073|TIGR00254 NJ56_RS06750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001991|IPR018107|IPR023954 C4-dicarboxylate transport protein|Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter, conserved site GO:0006835|GO:0015293|GO:0016021 G3DSA:1.10.3860.10|MF_01300|PF00375|PR00173|PS00713|PS00714|SSF118215 NJ56_RS06755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007863|IPR011249|IPR011765 Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16, C-terminal|Peptidase M16, N-terminal GO:0003824|GO:0046872 G3DSA:3.30.830.10|PF00675|PF05193|SSF63411 NJ56_RS06760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002173|IPR011611|IPR029056 Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Ribokinase-like GO:0016773 G3DSA:3.40.1190.20|PF00294|PS00584|SSF53613 NJ56_RS06765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004370|IPR014347|IPR018191 4-oxalocrotonate tautomerase|4-oxalocrotonate tautomerase, Pseudomonas-type|Tautomerase/MIF superfamily GO:0006725|GO:0016853 G3DSA:3.30.429.10|PF01361|SSF55331|TIGR00013 NJ56_RS06770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001633 EAL domain G3DSA:3.20.20.450|PF00563|SM00052|SSF141868 NJ56_RS06775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003763|IPR011146 CDP-diacylglycerol pyrophosphatase|HIT-like domain GO:0003824|GO:0008654|GO:0008715|GO:0016020 G3DSA:3.30.428.30|MF_00319|PF02611|PIRSF001273|SSF54197 NJ56_RS06780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005274|IPR017039 Inner membrane protein YhjD|Virulence factor BrkB PF03631|PIRSF035875|TIGR00766 NJ56_RS06785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS06790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 G3DSA:1.10.3860.10|PF00375|PR00173|SSF118215 NJ56_RS06795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000277|IPR006233|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Cystathionine beta-lyase, bacterial|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0004121|GO:0005737|GO:0006520|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383|TIGR01324 NJ56_RS06800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004099|IPR006322|IPR012999|IPR016156|IPR023753 FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Glutathione reductase, eukaryote/bacterial|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0004362|GO:0006749|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0050661|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|SSF51905|SSF55424|TIGR01421 NJ56_RS06805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR007473|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Ribosomal RNA large subunit methyltransferase J|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0008649|GO:0032259|GO:0070475 G3DSA:3.40.50.150|MF_00934|PF04378|PS00092|SSF53335 NJ56_RS06810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001567|IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal|Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 G3DSA:1.10.1370.10|G3DSA:1.20.1050.40|PF01432|SSF55486 NJ56_RS06815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007536|IPR029063 Ribosomal RNA small subunit methyltransferase J|S-adenosyl-L-methionine-dependent methyltransferase GO:0008990|GO:0031167 G3DSA:3.40.1630.10|G3DSA:3.40.50.150|MF_01523|PF04445|SSF53335 NJ56_RS06820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006095|IPR006096|IPR006097|IPR014362|IPR016040|IPR033524 Glutamate dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal|Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain|Leu/Phe/Val dehydrogenases active site|NAD(P)-binding domain GO:0006520|GO:0016491|GO:0016639|GO:0055114 G3DSA:1.10.285.10|G3DSA:3.40.50.10860|G3DSA:3.40.50.720|PF00208|PF02812|PIRSF000185|PR00082|PS00074|SM00839|SSF51735|SSF53223 NJ56_RS06825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA GO:0006950 G3DSA:3.40.50.620|PF00582|PIRSF006276|SSF52402 NJ56_RS06830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019598 Universal stress protein B MF_01088|PF10625 NJ56_RS06835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 PF01384 NJ56_RS06840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004792|IPR023166|IPR023753 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like|FAD/NAD(P)-binding domain|HI0933 insert-like domain GO:0016491|GO:0055114 G3DSA:1.10.8.260|G3DSA:2.40.30.10|G3DSA:3.50.50.60|PF03486|PR00368|PR00411|SSF160996|SSF51905|TIGR00275 NJ56_RS06845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 NJ56_RS06850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016181 Acyl-CoA N-acyltransferase G3DSA:3.40.630.30|SSF55729 NJ56_RS06855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003829|IPR011051|IPR012093|IPR014710 Pirin|Pirin, N-terminal domain|RmlC-like cupin domain|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PIRSF006232|SSF51182 NJ56_RS06860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR001761|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I|Periplasmic binding protein/LacI sugar binding domain GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF00532|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS06865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PF02447|PIRSF002746|TIGR00791 NJ56_RS06885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006001|IPR027417|IPR031322 Carbohydrate kinase, thermoresistant glucokinase|P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase/gluconokinase GO:0005975|GO:0016301 G3DSA:3.40.50.300|PF01202|PR01100|SSF52540|TIGR01313 NJ56_RS06890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PF01914|TIGR00427 NJ56_RS06895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000319|IPR000534|IPR011534|IPR012080|IPR012280|IPR016040 Aspartate-semialdehyde dehydrogenase|Aspartate-semialdehyde dehydrogenase, conserved site|Aspartate-semialdehyde dehydrogenase, gamma-type|NAD(P)-binding domain|Semialdehyde dehydrogenase, NAD-binding|Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0004073|GO:0005737|GO:0006520|GO:0008652|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0016620|GO:0046983|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_02121|PF01118|PF02774|PIRSF000148|PS01103|SM00859|SSF51735|SSF55347|TIGR01745 NJ56_RS06900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR010559|IPR011620|IPR029016 GAF domain-like|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region|Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 G3DSA:3.30.450.40|G3DSA:3.30.565.10|PF06580|PF07694|SSF55781|SSF55874 NJ56_RS06905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004193|IPR006047|IPR006048|IPR006407|IPR013783|IPR014756|IPR017853 1,4-alpha-glucan-branching enzyme, GlgB|Alpha-amylase/branching enzyme, C-terminal all beta|Glycoside hydrolase superfamily|Glycoside hydrolase, family 13, N-terminal|Glycosyl hydrolase, family 13, catalytic domain|Immunoglobulin E-set|Immunoglobulin-like fold GO:0003824|GO:0003844|GO:0004553|GO:0005975|GO:0005978|GO:0043169 G3DSA:2.60.40.10|G3DSA:2.60.40.1180|G3DSA:3.20.20.80|MF_00685|PF00128|PF02806|PF02922|PIRSF000463|SM00642|SSF51011|SSF51445|SSF81296|TIGR01515 NJ56_RS06910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004193|IPR006047|IPR011837|IPR013783|IPR014756|IPR017853|IPR022844 Glycogen debranching enzyme, GlgX type|Glycogen debranching enzyme, bacterial|Glycoside hydrolase superfamily|Glycoside hydrolase, family 13, N-terminal|Glycosyl hydrolase, family 13, catalytic domain|Immunoglobulin E-set|Immunoglobulin-like fold GO:0003824|GO:0004133|GO:0004553|GO:0005975|GO:0005977|GO:0005980 G3DSA:2.60.40.10|G3DSA:2.60.40.1180|G3DSA:3.20.20.80|MF_01248|PF00128|PF02922|SM00642|SSF51011|SSF51445|SSF81296|TIGR02100 NJ56_RS06915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005835|IPR005836|IPR011004|IPR011831|IPR023049|IPR029044 ADP-glucose pyrophosphorylase, conserved site|Glucose-1-phosphate adenylyltransferase|Glucose-1-phosphate adenylyltransferase GlgC, bacterial|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|Trimeric LpxA-like GO:0005978|GO:0008878|GO:0009058|GO:0016779 G3DSA:2.160.10.10|G3DSA:3.90.550.10|MF_00624|PF00483|PS00808|PS00809|PS00810|SSF51161|SSF53448|TIGR02091 NJ56_RS06920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001296|IPR011835|IPR013534 Bacterial/plant glycogen synthase|Glycosyl transferase, family 1|Starch synthase, catalytic domain GO:0004373 G3DSA:3.40.50.2000|MF_00484|PF00534|PF08323|SSF53756|TIGR02095 NJ56_RS06925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000811|IPR011833|IPR035090 Glycogen/starch/alpha-glucan phosphorylase|Glycosyl transferase, family 35|Phosphorylase pyridoxal-phosphate attachment site GO:0004645|GO:0005975|GO:0008184|GO:0030170 G3DSA:3.40.50.2000|PF00343|PIRSF000460|PS00102|SSF53756|TIGR02093 NJ56_RS06930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000447|IPR006076|IPR023753|IPR031656 Alpha-glycerophosphate oxidase, C-terminal|FAD dependent oxidoreductase|FAD-dependent glycerol-3-phosphate dehydrogenase|FAD/NAD(P)-binding domain GO:0004368|GO:0006072|GO:0009331|GO:0016491|GO:0055114 G3DSA:3.50.50.60|PF01266|PF16901|PR01001|PS00977|PS00978|SSF51905|SSF54373 NJ56_RS06935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001034|IPR011991|IPR014036|IPR018356 DeoR C-terminal sensor domain|DeoR-type HTH domain|Transcription regulator, HTH DeoR-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.1360|PF00455|PF08220|PR00037|PS00894|SM00420|SM01134|SSF100950|SSF46785 NJ56_RS06940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022732|IPR022764|IPR023662 Peptidase S54, GlpG peptidase, N-terminal|Peptidase S54, rhomboid domain|Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 G3DSA:1.20.1540.10|MF_01594|PF01694|PF12122|SSF144091|TIGR04239 NJ56_RS06945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001763|IPR023695 Rhodanese-like domain|Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 G3DSA:3.40.250.10|MF_01009|PF00581|SM00450|SSF52821 NJ56_RS06950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR011990|IPR011991|IPR016032|IPR023768|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Tetratricopeptide-like helical domain|Transcription regulator LuxR, C-terminal|Transcriptional regulator HTH-type, MalT|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0005515|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.25.40.10|G3DSA:3.40.50.300|MF_01247|PF00196|PR00038|PS00622|SM00421|SSF46894|SSF48452|SSF52540 NJ56_RS06955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000811|IPR011833|IPR035090 Glycogen/starch/alpha-glucan phosphorylase|Glycosyl transferase, family 35|Phosphorylase pyridoxal-phosphate attachment site GO:0004645|GO:0005975|GO:0008184|GO:0030170 G3DSA:3.40.50.2000|PF00343|PIRSF000460|PS00102|SSF53756|TIGR02093 NJ56_RS06960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003385|IPR017853 Glycoside hydrolase superfamily|Glycoside hydrolase, family 77 GO:0004134|GO:0005975 G3DSA:3.20.20.80|PF02446|SSF51445|TIGR00217 NJ56_RS06965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000361|IPR001075|IPR017726|IPR034904 Fe-S cluster assembly domain|Fe/S biogenesis protein NfuA|FeS cluster biogenesis|NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536|GO:0051539|GO:0051604 G3DSA:2.60.300.12|G3DSA:3.30.300.130|MF_01637|PD002830|PF01106|PF01521|SSF117916|SSF89360|TIGR03341 NJ56_RS06970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 NJ56_RS06975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000073|IPR010076|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 G3DSA:3.40.50.1820|MF_01260|PF00561|SSF53474|TIGR01738 NJ56_RS06980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010854|IPR025543 Dodecin-like|Domain of unknown function DUF1471 G3DSA:3.30.1660.10|PF07338|SSF159871 NJ56_RS06985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011991|IPR015102|IPR023732 Probable [Fe-S]-dependent transcriptional repressor|Transcriptional regulator HTH-type, FeoC|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|MF_01586|PF09012|SSF46785 NJ56_RS06990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003373|IPR005225|IPR011640|IPR011642|IPR027417|IPR030389 FeoB-type guanine nucleotide-binding (G) domain|Ferrous iron transport protein B|Ferrous iron transport protein B, C-terminal|Nucleoside transporter/FeoB GTPase, Gate domain|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0005525|GO:0015093|GO:0015684|GO:0016021 G3DSA:3.40.50.300|PF02421|PF07664|PF07670|SSF52540|TIGR00231|TIGR00437 NJ56_RS06995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007167|IPR008988 Ferrous iron transporter FeoA domain|Transcriptional repressor, C-terminal GO:0046914 G3DSA:2.30.30.90|PF04023|SM00899|SSF50037 NJ56_RS07000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003029|IPR006641|IPR010994|IPR012337|IPR012340|IPR018974|IPR022967|IPR023319|IPR023323|IPR032639 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribonuclease H-like domain|RuvA domain 2-like|S1 domain|Tex protein, YqgF-like domain|Tex-like domain|Tex-like protein, HTH domain|Tex-like protein, N-terminal|YqgF/RNase H-like domain GO:0003676|GO:0006139 G3DSA:1.10.10.650|G3DSA:1.10.150.310|G3DSA:1.10.3500.10|G3DSA:2.40.50.140|PF00575|PF09371|PF12836|PF16921|SM00316|SM00732|SSF158832|SSF47781|SSF50249|SSF53098 NJ56_RS07005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS07010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016084 Haem oxygenase-like, multi-helical G3DSA:1.20.910.10 NJ56_RS07020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011991|IPR016084 Haem oxygenase-like, multi-helical|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|G3DSA:1.20.910.10|SSF46785|SSF48613 NJ56_RS07025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001437|IPR006358|IPR018151|IPR022691|IPR023459|IPR028624 Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor GreB|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784|GO:0070063 G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|MF_00930|PF01272|PF03449|PIRSF006092|PS00829|PS00830|SSF46557|SSF54534|TIGR01461 NJ56_RS07030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991|IPR016032 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 NJ56_RS07035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003660|IPR003661|IPR004358 HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PR00344|SM00304|SM00387|SM00388|SSF47384|SSF55874 NJ56_RS07040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001272|IPR008210|IPR013035|IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site|Phosphoenolpyruvate carboxykinase, ATP-utilising|Phosphoenolpyruvate carboxykinase, C-terminal|Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0004612|GO:0005524|GO:0006094|GO:0017076 G3DSA:3.40.449.10|G3DSA:3.90.228.20|MF_00453|PF01293|PIRSF006294|PS00532|SSF53795|SSF68923|TIGR00224 NJ56_RS07045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000397|IPR016153|IPR016154|IPR023212 Heat shock protein Hsp33|Heat shock protein Hsp33, C-terminal|Heat shock protein Hsp33, N-terminal|Heat shock protein Hsp33, helix hairpin bin domain GO:0005737|GO:0006457|GO:0051082 G3DSA:1.10.287.480|G3DSA:3.55.30.10|G3DSA:3.90.1280.10|MF_00117|PF01430|PIRSF005261|SSF118352|SSF64397 NJ56_RS07050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002942|IPR025708 Heat shock protein 15|RNA-binding S4 domain GO:0003677|GO:0003723|GO:0003727|GO:0034605|GO:0043023 G3DSA:3.10.290.10|PF01479|PIRSF016821|SM00363|SSF55174 NJ56_RS07055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006439|IPR023214 HAD hydrolase, subfamily IA|HAD-like domain GO:0008152|GO:0016787 G3DSA:3.40.50.1000|PF13419|PR00413|SSF56784|TIGR01509 NJ56_RS07060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 PD147088|PF07095 NJ56_RS07065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR015797|IPR020084 NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site GO:0016787 G3DSA:3.90.79.10|PF00293|PS00893|SSF55811 NJ56_RS07070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001264|IPR001460|IPR012338|IPR023346|IPR031376 Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain|Penicillin-binding protein, OB-like domain|Penicillin-binding protein, transpeptidase GO:0008658 G3DSA:1.10.3810.10|G3DSA:2.40.50.140|G3DSA:3.40.710.10|PF00905|PF00912|PF17092|SSF53955|SSF56601|TIGR02074 NJ56_RS07075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005883 Type IV pilus assembly protein PilM G3DSA:3.30.420.40|PF11104 NJ56_RS07080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007813 Fimbrial assembly PilN PF05137 NJ56_RS07095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001775|IPR004845|IPR004846|IPR005644|IPR011662|IPR013355 GspD/PilQ family|NolW-like|Secretin/TonB, short N-terminal domain|Type II secretion system GspD, conserved site|Type II/III secretion system|Type IV pilus secretin PilQ GO:0008565|GO:0009306|GO:0019867 PF00263|PF03958|PR00811|PR01032|PS00875|SM00965|TIGR02515 NJ56_RS07100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000623|IPR023000|IPR027417|IPR031322 P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase, conserved site|Shikimate kinase/Threonine synthase-like 1|Shikimate kinase/gluconokinase G3DSA:3.40.50.300|MF_00109|PF01202|PR01100|PS01128|SSF52540 NJ56_RS07105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016037|IPR030960|IPR030963 3-dehydroquinate synthase AroB|3-dehydroquinate synthase domain|3-dehydroquinate synthase family GO:0003856|GO:0005737|GO:0009073|GO:0016838 G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|MF_00110|PF01761|PIRSF001455|SSF56796|TIGR01357 NJ56_RS07110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007730|IPR032899 Cell division protein DamX|Sporulation-related domain GO:0030428|GO:0032506|GO:0042834 MF_02021|PF05036|SSF110997 NJ56_RS07115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR012263|IPR012327|IPR023095|IPR029063 Adenine modification methylase, M.EcoRV-type|Adenine-specific methyltransferase, domain 2|D12 class N6 adenine-specific DNA methyltransferase|DNA methylase, N-6 adenine-specific, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0009007|GO:0032259|GO:0032775 G3DSA:1.10.1020.10|G3DSA:3.40.50.150|PF02086|PIRSF000398|PR00505|PS00092|SSF53335|TIGR00571 NJ56_RS07120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000056|IPR011060|IPR013785|IPR026019 Aldolase-type TIM barrel|Ribulose-phosphate 3-epimerase|Ribulose-phosphate 3-epimerase-like|Ribulose-phosphate binding barrel GO:0003824|GO:0004750|GO:0005975|GO:0006098|GO:0008152|GO:0016857 G3DSA:3.20.20.70|PF00834|PIRSF001461|PS01085|PS01086|SSF51366|TIGR01163 NJ56_RS07125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006346|IPR006439|IPR023198|IPR023214 2-phosphoglycolate phosphatase, prokaryotic|HAD hydrolase, subfamily IA|HAD-like domain|Phosphoglycolate phosphatase, domain 2 GO:0008152|GO:0008967|GO:0016787|GO:0046295 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|MF_00495|PF13419|PR00413|SSF56784|TIGR01449|TIGR01509|TIGR01549 NJ56_RS07130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001412|IPR002305|IPR002306|IPR014729|IPR024109 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ic|Rossmann-like alpha/beta/alpha sandwich fold|Tryptophan-tRNA ligase|Tryptophan-tRNA ligase, bacterial-type GO:0000166|GO:0004812|GO:0004830|GO:0005524|GO:0005737|GO:0006418|GO:0006436 G3DSA:1.10.240.10|G3DSA:3.40.50.620|MF_00140_B|PF00579|PR01039|PS00178|SSF52374|TIGR00233 NJ56_RS07135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000878|IPR003043|IPR006366|IPR006367|IPR012409|IPR014776|IPR014777|IPR016040|IPR019478|IPR028281 NAD(P)-binding domain|Sirohaem synthase|Sirohaem synthase, N-terminal|Sirohaem synthase, dimerisation domain|Siroheme synthase, central domain|Tetrapyrrole methylase|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|Uroporphiryn-III C-methyltransferase, conserved site|Uroporphyrin-III C-methyltransferase GO:0004851|GO:0006779|GO:0008152|GO:0008168|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 G3DSA:1.10.8.210|G3DSA:3.30.160.110|G3DSA:3.30.950.10|G3DSA:3.40.1010.10|G3DSA:3.40.50.720|MF_01646|PF00590|PF10414|PF13241|PF14824|PIRSF036426|PS00839|PS00840|SSF51735|SSF53790|SSF75615|TIGR01469|TIGR01470 NJ56_RS07140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000292|IPR023271|IPR024002 Aquaporin-like|Formate/nitrite transporter|Formate/nitrite transporter, conserved site GO:0005215|GO:0006810|GO:0016020 G3DSA:1.20.1080.10|PF01226|PS01005|PS01006|TIGR00790 NJ56_RS07145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012748|IPR017941 Nitrite reductase [NAD(P)H] small subunit, NirD|Rieske [2Fe-2S] iron-sulphur domain GO:0008942|GO:0016491|GO:0042128|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF13806|SSF50022|TIGR02378 NJ56_RS07150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005117|IPR006066|IPR006067|IPR007419|IPR012744|IPR017121|IPR023753 BFD-like [2Fe-2S]-binding domain|FAD/NAD(P)-binding domain|Nitrite reductase [NAD(P)H] large subunit, NirB|Nitrite reductase [NAD(P)H], large subunit|Nitrite/Sulfite reductase ferredoxin-like domain|Nitrite/sulphite reductase 4Fe-4S domain|Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0008942|GO:0016491|GO:0020037|GO:0042128|GO:0050660|GO:0050661|GO:0051536|GO:0055114 G3DSA:3.30.413.10|G3DSA:3.50.50.60|G3DSA:3.90.480.10|PF01077|PF03460|PF04324|PF07992|PIRSF037149|PR00368|PR00397|PR00411|PS00365|SSF51905|SSF55124|SSF56014|TIGR02374 NJ56_RS07155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011059|IPR013108|IPR032466 Amidohydrolase 3|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF07969|SSF51338|SSF51556 NJ56_RS07160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846|IPR023528 Major facilitator superfamily|Major facilitator superfamily domain|Major facilitator superfamily transporter, TsgA GO:0016021|GO:0055085 G3DSA:1.20.1250.20|MF_01044|PF07690|SSF103473 NJ56_RS07165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021333 Protein of unknown function DUF2946 PF11162 NJ56_RS07170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000531|IPR010100|IPR012910 TonB-dependent copper receptor|TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01778 NJ56_RS07175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PR00036|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS07180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001088|IPR015955|IPR016040|IPR019802|IPR022616 Glycoside hydrolase, family 4|Glycoside hydrolase, family 4, conserved site|Glycosyl hydrolase, family 4, C-terminal|Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal|NAD(P)-binding domain GO:0003824|GO:0004553|GO:0005975|GO:0016616|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.110.10|PF02056|PF11975|PR00732|PS01324|SSF51735|SSF56327 NJ56_RS07185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002130|IPR020892|IPR024936|IPR029000 Cyclophilin-like domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase|Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0000413|GO:0003755|GO:0006457 G3DSA:2.40.100.10|PF00160|PIRSF001467|PR00153|PS00170|SSF50891 NJ56_RS07190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006221|IPR017926|IPR029062 Anthranilate synthase/para-aminobenzoate synthase like domain|Class I glutamine amidotransferase-like|Glutamine amidotransferase GO:0008152 G3DSA:3.40.50.880|PF00117|PR00096|PR00097|PR00099|SSF52317|TIGR00566 NJ56_RS07195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004636|IPR005814|IPR015421|IPR015422|IPR015424|IPR017652 Acetyl/Succinylornithine transaminase family, bacteria|Acetylornithine/Succinylornithine transaminase family|Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0006520|GO:0006525|GO:0008483|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01107|PF00202|PIRSF000521|PS00600|SSF53383|TIGR00707|TIGR03246 NJ56_RS07200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010020|IPR032692 Integral membrane protein YccS, N-terminal|Integral membrane protein, YccS/YhfK PF12805|PF13515|TIGR01667 NJ56_RS07205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000595|IPR011991|IPR012318|IPR014710|IPR018335|IPR018488|IPR018490 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding, conserved site|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Transcription regulator HTH, Crp-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF00325|PR00034|PS00042|PS00888|PS00889|SM00100|SM00419|SSF46785|SSF51206 NJ56_RS07210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003718|IPR015946 K homology domain-like, alpha/beta|OsmC/Ohr family G3DSA:2.20.25.10|G3DSA:3.30.300.20|PF02566|SSF82784 NJ56_RS07220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|PF13535|SSF56059 NJ56_RS07225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892 NJ56_RS07230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 NJ56_RS07235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|PF00291|SSF53686 NJ56_RS07240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006082|IPR006083|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Phosphoribulokinase|Phosphoribulokinase/uridine kinase GO:0005524|GO:0005975|GO:0008152|GO:0008974|GO:0016301 G3DSA:3.40.50.300|PF00485|PR00478|PS00567|SSF52540 NJ56_RS07245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010648 Uncharacterised protein family UPF0270 G3DSA:1.10.10.610|MF_00690|PD026997|PF06794|PIRSF006169|SSF118001 NJ56_RS07250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000073|IPR000952|IPR012020|IPR029058 AB hydrolase 4 family|AB hydrolase 4, conserved site|Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF00561|PIRSF005211|PS01133|SSF53474 NJ56_RS07255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810 NJ56_RS07260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 G3DSA:3.40.50.2000|PF01075|SSF53756 NJ56_RS07265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 NJ56_RS07270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12848|PS00211|SM00382|SSF52540 NJ56_RS07275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003680|IPR023947|IPR029039 Flavodoxin-like fold|Flavoprotein-like domain|Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 G3DSA:3.40.50.360|MF_01415|PF02525|SSF52218 NJ56_RS07280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003148|IPR004771|IPR006153|IPR016040|IPR020884 Cation/H+ exchanger|Glutathione-regulated potassium-efflux system protein KefB|K+/H+ exchanger|NAD(P)-binding domain|Regulator of K+ conductance, N-terminal GO:0005886|GO:0006812|GO:0006813|GO:0008324|GO:0015299|GO:0015503|GO:0016021|GO:0055085 G3DSA:1.20.91.10|G3DSA:3.40.50.720|MF_01412|PF00999|PF02254|SSF51735|TIGR00932 NJ56_RS07285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012658 Conserved hypothetical protein CHP02443 G3DSA:2.20.25.10|PF09526|TIGR02443 NJ56_RS07290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain G3DSA:3.10.50.40|PF00254|SSF54534 NJ56_RS07295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007236 SlyX G3DSA:1.20.5.300|MF_00715|PF04102 NJ56_RS07300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000774|IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain|Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 G3DSA:1.10.287.460|G3DSA:3.10.50.40|PF00254|PF01346|SSF54534 NJ56_RS07305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013559 YheO-like G3DSA:1.10.10.60|PD037769|PF08348|PF13309 NJ56_RS07310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003787|IPR017463|IPR027396 DsrEFH-like|Sulphur relay, DsrE/F-like protein|Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 G3DSA:3.40.1260.10|MF_00390|PF02635|SSF75169|TIGR03012 NJ56_RS07315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003787|IPR017462|IPR027396 DsrEFH-like|Sulphur relay, DsrE/F-like protein|Sulphur relay, TusC/DsrF G3DSA:3.40.1260.10|MF_00389|PF02635|SSF75169|TIGR03010 NJ56_RS07320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007215|IPR023526|IPR027396 DsrEFH-like|Sulphur relay, TusB|Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 G3DSA:3.40.1260.10|MF_01564|PF04077|SSF75169|TIGR03011 NJ56_RS07325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005679|IPR006032|IPR012340 Nucleic acid-binding, OB-fold|Ribosomal protein S12, bacterial-type|Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935 G3DSA:2.40.50.140|MF_00403_B|PF00164|PIRSF002133|PR01034|PS00055|SSF50249|TIGR00981 NJ56_RS07330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000235|IPR005717|IPR020606|IPR023798 Ribosomal protein S5/S7|Ribosomal protein S7 domain|Ribosomal protein S7, bacterial/organellar-type|Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412|GO:0015935 G3DSA:1.10.455.10|MF_00480_B|PF00177|PIRSF002122|PS00052|SSF47973|TIGR01029 NJ56_RS07335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000640|IPR000795|IPR004161|IPR004540|IPR005225|IPR005517|IPR009000|IPR014721|IPR020568|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFG/EF2|Translation elongation factor EFG/EF2, domain IV|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.30.230.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00054_B|PF00009|PF00679|PF03144|PF03764|PF14492|PR00315|PS00301|SM00838|SM00889|SSF50447|SSF52540|SSF54211|SSF54980|TIGR00231|TIGR00484 NJ56_RS07345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation protein, beta-barrel domain GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485 NJ56_RS07350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007419 BFD-like [2Fe-2S]-binding domain PF04324 NJ56_RS07355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002024|IPR008331|IPR009078|IPR012347 Bacterioferritin|Ferritin-like superfamily|Ferritin-related|Ferritin/DPS protein domain GO:0006826|GO:0006879|GO:0008199 G3DSA:1.20.1260.10|PF00210|PIRSF002560|PR00601|PS00549|SSF47240|TIGR00754 NJ56_RS07360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001848|IPR018268|IPR027486 Ribosomal protein S10|Ribosomal protein S10 domain|Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.70.600|MF_00508|PF00338|PR00971|PS00361|SM01403|SSF54999|TIGR01049 NJ56_RS07365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000597|IPR009000|IPR019926|IPR019927 Ribosomal protein L3|Ribosomal protein L3, bacterial/organelle-type|Ribosomal protein L3, conserved site|Translation protein, beta-barrel domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.960.10|MF_01325_B|PF00297|PS00474|SSF50447|TIGR03625 NJ56_RS07370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002136|IPR013005|IPR023574 50S ribosomal protein uL4|Ribosomal protein L4 domain|Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 G3DSA:3.40.1370.10|MF_01328_B|PF00573|SSF52166|TIGR03953 NJ56_RS07375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001014|IPR012678|IPR013025 Ribosomal protein L23/L15e core domain|Ribosomal protein L23/L25, conserved site|Ribosomal protein L25/L23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.70.330|MF_01369_B|PF00276|PS00050|SSF54189 NJ56_RS07380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002171|IPR005880|IPR008991|IPR012340|IPR014722|IPR014726|IPR022666|IPR022669|IPR022671 Nucleic acid-binding, OB-fold|Ribosomal Proteins L2, RNA binding domain|Ribosomal protein L2|Ribosomal protein L2 domain 2|Ribosomal protein L2, C-terminal|Ribosomal protein L2, bacterial/organellar-type|Ribosomal protein L2, conserved site|Ribosomal protein L2, domain 3|Translation protein SH3-like domain GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934|GO:0016740 G3DSA:2.30.30.30|G3DSA:2.40.50.140|G3DSA:4.10.950.10|MF_01320_B|PF00181|PF03947|PIRSF002158|PS00467|SM01382|SM01383|SSF50104|SSF50249|TIGR01171 NJ56_RS07385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002222|IPR005732|IPR020934|IPR023575 Ribosomal protein S19 conserved site|Ribosomal protein S19, bacterial-type|Ribosomal protein S19, superfamily|Ribosomal protein S19/S15 GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.860.10|MF_00531|PF00203|PIRSF002144|PR00975|PS00323|SSF54570|TIGR01050 NJ56_RS07390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001063|IPR005727|IPR018260 Ribosomal protein L22, bacterial/chloroplast-type|Ribosomal protein L22/L17|Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934 G3DSA:3.90.470.10|MF_01331_B|PF00237|PS00464|SSF54843|TIGR01044 NJ56_RS07395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001351|IPR004044|IPR004087|IPR005704|IPR009019|IPR015946|IPR018280 K Homology domain|K Homology domain, type 2|K homology domain, prokaryotic type|K homology domain-like, alpha/beta|Ribosomal protein S3, C-terminal|Ribosomal protein S3, bacterial|Ribosomal protein S3, conserved site GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.1140.32|G3DSA:3.30.300.20|MF_01309_B|PF00189|PF07650|PS00548|SM00322|SSF54814|SSF54821|TIGR01009 NJ56_RS07400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000114|IPR016180|IPR020798 Ribosomal protein L10e/L16|Ribosomal protein L16|Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.90.1170.10|MF_01342|PF00252|PR00060|PS00586|PS00701|SSF54686|TIGR01164 NJ56_RS07405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.287.310|MF_00374|PF00831|SSF46561|TIGR00012 NJ56_RS07410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000266|IPR012340|IPR019979|IPR019984 30S ribosomal protein S17|Nucleic acid-binding, OB-fold|Ribosomal protein S17, conserved site|Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.140|MF_01345_B|PD001295|PF00366|PR00973|PS00056|SSF50249|TIGR03635 NJ56_RS07415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000218|IPR005745|IPR019972 Ribosomal protein L14P|Ribosomal protein L14P, conserved site|Ribosomal protein L14P, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0015934 G3DSA:2.40.150.20|MF_01367|PF00238|PS00049|SM01374|SSF50193|TIGR01067 NJ56_RS07420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003256|IPR005824|IPR005825|IPR008991|IPR014722 KOW|Ribosomal protein L2 domain 2|Ribosomal protein L24|Ribosomal protein L24/L26, conserved site|Translation protein SH3-like domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.30.30|MF_01326_B|PF17136|PS01108|SM00739|SSF50104|TIGR01079 NJ56_RS07425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002132|IPR020929|IPR020930|IPR022803|IPR031309|IPR031310 Ribosomal protein L5|Ribosomal protein L5 domain|Ribosomal protein L5, C-terminal|Ribosomal protein L5, N-terminal|Ribosomal protein L5, bacterial-type|Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.1440.10|MF_01333_B|PF00281|PF00673|PIRSF002161|PS00358|SSF55282 NJ56_RS07430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001209|IPR018271|IPR023036 Ribosomal protein S14|Ribosomal protein S14, bacterial/plastid|Ribosomal protein S14, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.830.10|MF_00537|PF00253|PS00527|SSF57716 NJ56_RS07435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 G3DSA:3.30.1370.30|G3DSA:3.30.1490.10|MF_01302_B|PF00410|PS00053|SSF56047 NJ56_RS07440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000702|IPR002358|IPR019906|IPR020040 Ribosomal protein L6|Ribosomal protein L6, alpha-beta domain|Ribosomal protein L6, bacterial-type|Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.90.930.12|MF_01365_B|PF00347|PIRSF002162|PR00059|PS00525|SSF56053|TIGR03654 NJ56_RS07445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004389|IPR005484 Ribosomal protein L18|Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.420.100|MF_01337_B|PF00861|SSF53137|TIGR00060 NJ56_RS07450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005324|IPR005712|IPR013810|IPR014721|IPR018192|IPR020568 Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S5, C-terminal|Ribosomal protein S5, N-terminal|Ribosomal protein S5, N-terminal, conserved site|Ribosomal protein S5, bacterial-type GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.160.20|G3DSA:3.30.230.10|MF_01307_B|PF00333|PF03719|PS00585|SSF54211|SSF54768|TIGR01021 NJ56_RS07455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005996|IPR016082|IPR018038 Ribosomal protein L30, bacterial-type|Ribosomal protein L30, conserved site|Ribosomal protein L30, ferredoxin-like fold domain GO:0003735|GO:0006412|GO:0015934 G3DSA:3.30.1390.20|MF_01371_B|PF00327|PIRSF002211|PS00634|SSF55129|TIGR01308 NJ56_RS07460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001196|IPR005749|IPR021131|IPR030878 Ribosomal protein L15|Ribosomal protein L15, bacterial-type|Ribosomal protein L15, conserved site|Ribosomal protein L18e/L15P GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934 G3DSA:3.100.10.10|MF_01341|PF00828|PS00475|SSF52080|TIGR01071 NJ56_RS07465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002208|IPR023201|IPR026593|IPR030659 Protein translocase subunit SecY|SecY conserved site|SecY subunit domain|SecY/SEC61-alpha family GO:0015031|GO:0016020 G3DSA:1.10.3370.10|MF_01465|PF00344|PIRSF004557|PR00303|PS00755|PS00756|SSF103491|TIGR00967 NJ56_RS07470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00251|PD002101|PF00444|PS00828|SSF57840|TIGR01022 NJ56_RS07475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001892|IPR010979|IPR018269|IPR019980|IPR027437 30s ribosomal protein S13, C-terminal|Ribosomal protein S13|Ribosomal protein S13, bacterial-type|Ribosomal protein S13, conserved site|Ribosomal protein S13-like, H2TH GO:0003676|GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.8.50|G3DSA:4.10.910.10|MF_01315|PF00416|PIRSF002134|PS00646|SSF46946|TIGR03631 NJ56_RS07480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001971|IPR018102|IPR019981 Ribosomal S11, conserved site|Ribosomal protein S11|Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.420.80|MF_01310|PF00411|PIRSF002131|PS00054|SSF53137|TIGR03632 NJ56_RS07485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001912|IPR002942|IPR005709|IPR018079 RNA-binding S4 domain|Ribosomal protein S4, bacterial-type|Ribosomal protein S4, conserved site|Ribosomal protein S4/S9, N-terminal GO:0003723|GO:0003735|GO:0005622|GO:0006412|GO:0015935|GO:0019843 G3DSA:1.10.1050.10|G3DSA:3.10.290.10|MF_01306_B|PF00163|PF01479|PS00632|SM00363|SM01390|SSF55174|TIGR01017 NJ56_RS07490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009025|IPR011260|IPR011262|IPR011263|IPR011773 DNA-directed RNA polymerase, RBP11-like dimerisation domain|DNA-directed RNA polymerase, RpoA/D/Rpb3-type|DNA-directed RNA polymerase, alpha subunit|DNA-directed RNA polymerase, insert domain|RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351|GO:0046983 G3DSA:1.10.150.20|G3DSA:3.30.1360.10|MF_00059|PD001179|PF01000|PF01193|PF03118|SM00662|SSF47789|SSF55257|SSF56553|TIGR02027 NJ56_RS07495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.90.1030.10|MF_01368|PF01196|PS01167|SSF64263|TIGR00059 NJ56_RS07500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000551|IPR009061|IPR011788 MerR-type HTH domain|Putative DNA-binding domain|Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0006355|GO:0008270 G3DSA:1.10.1660.10|PF13411|PR00040|PS00552|SM00422|SSF46955|TIGR02043 NJ56_RS07505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005589 Protein of unknown function DUF331 PF03889 NJ56_RS07510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001185|IPR019823 Large-conductance mechanosensitive channel|Large-conductance mechanosensitive channel, conserved site GO:0005216|GO:0006810|GO:0016021 MF_00115|PF01741|PR01264|PS01327|SSF81330|TIGR00220 NJ56_RS07515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003148|IPR006036|IPR006037|IPR016040 NAD(P)-binding domain|Potassium uptake protein TrkA|Regulator of K+ conductance, C-terminal|Regulator of K+ conductance, N-terminal GO:0005886|GO:0006813|GO:0008324|GO:0015079 G3DSA:3.30.70.1450|G3DSA:3.40.50.720|PF02080|PF02254|PR00335|SSF116726|SSF51735 NJ56_RS07520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001678|IPR004573|IPR006027|IPR018314|IPR023267|IPR023541|IPR029063 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site|NusB/RsmB/TIM44|RNA (C5-cytosine) methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase|SAM-dependent methyltransferase RsmB/NOP2-type|rRNA small subunit methyltransferase B|rRNA small subunit methyltransferase B, enterobacteriaceae GO:0003723|GO:0006355|GO:0006364|GO:0008168|GO:0008649 G3DSA:1.10.287.730|G3DSA:1.10.940.10|G3DSA:3.30.70.1170|G3DSA:3.40.50.150|MF_01856|PF01029|PF01189|PR02008|PS01153|SSF48013|SSF53335|TIGR00563 NJ56_RS07525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001555|IPR002376|IPR005793|IPR005794|IPR011034 Formyl transferase, C-terminal|Formyl transferase, C-terminal-like|Formyl transferase, N-terminal|Methionyl-tRNA formyltransferase|Phosphoribosylglycinamide formyltransferase, active site GO:0003824|GO:0004479|GO:0009058|GO:0016742|GO:0071951 G3DSA:3.10.25.10|G3DSA:3.40.50.170|MF_00182|PF00551|PF02911|PS00373|SSF50486|SSF53328|TIGR00460 NJ56_RS07530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023635 Peptide deformylase G3DSA:3.90.45.10|MF_00163|PF01327|PIRSF004749|PR01576|SSF56420|TIGR00079 NJ56_RS07535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003488|IPR011991 DNA recombination-mediator protein A|Winged helix-turn-helix DNA-binding domain GO:0009294 G3DSA:1.10.10.10|G3DSA:3.40.50.450|PF02481|SSF102405|TIGR00732 NJ56_RS07540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007456 Smg MF_00598|PF04361 NJ56_RS07545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 G3DSA:3.30.65.10|PF01396|SSF57783 NJ56_RS07550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006070|IPR017945|IPR023535 DHBP synthase RibB-like alpha/beta domain|Threonylcarbamoyl-AMP synthase|YrdC-like domain GO:0002949|GO:0003725|GO:0005524 G3DSA:3.90.870.10|MF_01852|PF01300|SSF55821 NJ56_RS07555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006151|IPR011342|IPR013708|IPR016040|IPR022893 NAD(P)-binding domain|Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase|Shikimate dehydrogenase|Shikimate dehydrogenase family|Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0019632|GO:0050661|GO:0055114 G3DSA:3.40.50.10860|G3DSA:3.40.50.720|MF_00222|PF01488|PF08501|SSF51735|SSF53223|TIGR00507 NJ56_RS07560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001451|IPR011004 Hexapeptide repeat|Trimeric LpxA-like G3DSA:2.160.10.10|PF00132|SSF51161 NJ56_RS07600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005697|IPR029062|IPR033752 Class I glutamine amidotransferase-like|Homoserine O-succinyltransferase MetA|MetA family GO:0005737|GO:0008899|GO:0019281 G3DSA:3.40.50.880|MF_00295|PD037892|PF04204|PIRSF000450|SSF52317|TIGR01001 NJ56_RS07605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001465|IPR006252|IPR011076 Malate synthase|Malate synthase A|Malate synthase-like GO:0003824|GO:0004474|GO:0006097 G3DSA:1.20.1220.12|G3DSA:3.20.20.360|PF01274|PIRSF001363|SSF51645|TIGR01344 NJ56_RS07610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006254|IPR015813|IPR018523 Isocitrate lyase|Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824|GO:0004451|GO:0008152|GO:0019752 G3DSA:3.20.20.60|PF00463|PIRSF001362|PS00161|SSF51621|TIGR01346 NJ56_RS07615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 MF_00747|PD043552|PF06315|PIRSF000719 NJ56_RS07620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005471|IPR011991|IPR014757|IPR029016 GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 NJ56_RS07625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000489|IPR003726|IPR003759|IPR004223|IPR006158|IPR011005|IPR011822 Cobalamin (vitamin B12)-binding domain|Cobalamin (vitamin B12)-binding module, cap domain|Cobalamin-dependent methionine synthase|Dihydropteroate synthase-like|Homocysteine-binding domain|Pterin-binding domain|Vitamin B12-dependent methionine synthase, activation domain GO:0008270|GO:0008705|GO:0009086|GO:0031419|GO:0042558|GO:0044237|GO:0046872 G3DSA:1.10.1240.10|G3DSA:3.10.196.10|G3DSA:3.20.20.20|G3DSA:3.20.20.330|G3DSA:3.40.50.280|PF00809|PF02310|PF02574|PF02607|PF02965|PIRSF000381|SM01018|SSF47644|SSF51717|SSF52242|SSF56507|SSF82282|TIGR02082 NJ56_RS07640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR011991 Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF00126|SSF46785 NJ56_RS07645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 PF03400 NJ56_RS07655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010667|IPR011747 Bacteriophage T4, Gp19, tail tube|Conserved hypothetical protein CHP02241 GO:0005198 PF06841|TIGR02241 NJ56_RS07660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020287|IPR035089 Tail sheath protein, C-terminal domain|Tail sheath protein, subtilisin-like domain PF04984|PF17482 NJ56_RS07665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020287|IPR035089 Tail sheath protein, C-terminal domain|Tail sheath protein, subtilisin-like domain PF04984|PF17482 NJ56_RS07670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020287 Tail sheath protein, C-terminal domain PF17482 NJ56_RS07675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010667|IPR011747 Bacteriophage T4, Gp19, tail tube|Conserved hypothetical protein CHP02241 GO:0005198 PF06841|TIGR02241 NJ56_RS07690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:2.40.50.260|G3DSA:3.55.50.10|PF05954|SSF69255|SSF69279 NJ56_RS07695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007048 GpW/Gp25/anti-adapter protein IraD G3DSA:3.10.450.40|PF04965|SSF160719 NJ56_RS07715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:2.10.25.20|SSF88874 NJ56_RS07725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR003959|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|SM00382|SSF52540 NJ56_RS07730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025351 Protein of unknown function DUF4255 PF14065 NJ56_RS07735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007577|IPR029044 Glycosyltransferase, DXD sugar-binding motif|Nucleotide-diphospho-sugar transferases PF04488|SSF53448 NJ56_RS07745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003344|IPR003535|IPR008964|IPR008979|IPR016186|IPR022409|IPR024519 Big-1 (bacterial Ig-like domain 1) domain|C-type lectin-like/link domain|Galactose-binding domain-like|Intimin/invasin bacterial adhesion mediator protein|Invasin/intimin cell-adhesion fragments|Inverse autotransporter, beta-domain|PKD/Chitinase domain GO:0007155 G3DSA:2.60.120.260|G3DSA:2.60.40.1080|G3DSA:2.60.40.1120|G3DSA:3.10.100.10|G3DSA:3.10.350.10|PF02369|PF11924|PR01369|SM00089|SM00634|SSF49373 NJ56_RS07755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 PF00872|PS01007 NJ56_RS07760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008638|IPR011050|IPR012334|IPR025157 Filamentous haemagglutinin, N-terminal|Hemagglutinin repeat|Pectin lyase fold|Pectin lyase fold/virulence factor G3DSA:2.160.20.10|PF05860|PF13332|SM00912|SSF51126|TIGR01901 NJ56_RS07765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005565|IPR013686|IPR027282|IPR035251 Haemolysin activator HlyB, C-terminal|Polypeptide-transport-associated, ShlB-type|ShlB, POTRA domain|Two partner secretion pathway transporter GO:0015031 G3DSA:2.40.160.50|G3DSA:3.10.20.310|PF03865|PF08479|PF17287|PIRSF029745 NJ56_RS07770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001048|IPR001341|IPR005260|IPR018042 Aspartate kinase domain|Aspartate kinase, conserved site|Aspartate kinase, monofunctional class|Aspartate/glutamate/uridylate kinase GO:0004072|GO:0008652|GO:0009089 G3DSA:3.30.70.260|G3DSA:3.40.1160.10|PF00696|PIRSF000726|PS00324|SSF53633|SSF55021|TIGR00656|TIGR00657 NJ56_RS07775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001672|IPR018189|IPR023096 Phosphoglucose isomerase (PGI)|Phosphoglucose isomerase, C-terminal|Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 G3DSA:1.10.1390.10|G3DSA:3.40.50.10490|MF_00473|PF00342|PR00662|PS00174|PS00765|SSF53697 NJ56_RS07780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009315|IPR020948 Phosphate-starvation-induced PsiE|Phosphate-starvation-induced PsiE-like GO:0016021|GO:0016036 MF_01048|PF06146|PIRSF029598 NJ56_RS07785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS07790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR029345|IPR035277 ABC transporter type 1, transmembrane domain MetI-like|Maltose transport system permease protein MalF N-terminal domain|Maltose transport system permease protein MalF, P2 domain GO:0006810|GO:0016020 G3DSA:1.10.3720.10|G3DSA:1.20.58.370|G3DSA:2.40.430.10|G3DSA:3.10.650.10|PF00528|PF14785|SSF160964|SSF161098 NJ56_RS07795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006060|IPR006061 Maltose/Cyclodextrin ABC transporter, substrate-binding protein|Solute-binding family 1, conserved site GO:0006810 G3DSA:3.40.190.10|PF13416|PR00181|PS01037|SSF53850 NJ56_RS07805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0016887|GO:0043190 G3DSA:2.40.50.100|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 NJ56_RS07810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003192|IPR023738 Maltoporin|Porin, LamB type GO:0006810|GO:0009279|GO:0015481|GO:0015768|GO:0016020|GO:0042956|GO:0042958 G3DSA:2.40.170.10|MF_01301|PD008788|PF02264|SSF56935 NJ56_RS07815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 PF07148 NJ56_RS07820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007440|IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain|Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 G3DSA:3.40.1410.10|MF_01632|PF04345|SSF64288 NJ56_RS07825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000537|IPR006370|IPR030470|IPR031103 4-hydroxybenzoate octaprenyltransferase|4-hydroxybenzoate polyprenyltransferase|UbiA prenyltransferase conserved site|UbiA prenyltransferase family GO:0004659|GO:0006744|GO:0016021|GO:0016765 MF_01635|PF01040|PS00943|TIGR01474 NJ56_RS07830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002123|IPR022284|IPR028354 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase|Glycerol-3-phosphate acyltransferase, PlsB|Phospholipid/glycerol acyltransferase GO:0004366|GO:0005886|GO:0008152|GO:0008374|GO:0008654|GO:0016746|GO:0044255 G3DSA:3.40.1130.10|MF_00393|PF01553|PIRSF000437|PIRSF500064|SM00563|SSF69593|TIGR03703 NJ56_RS07835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 G3DSA:1.10.3830.10|PF01219|PS01069 NJ56_RS07840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006197|IPR006199|IPR006200|IPR011991|IPR015927 LexA repressor, DNA-binding domain|Peptidase S24, LexA-like|Peptidase S24/S26A/S26B/S26C|Transcription regulator LexA|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0004252|GO:0006355|GO:0006508|GO:0009432|GO:0045892 G3DSA:1.10.10.10|G3DSA:2.10.109.10|MF_00015|PF00717|PF01726|PR00726|SSF46785|SSF51306|TIGR00498 NJ56_RS07845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002481|IPR011991 Ferric-uptake regulator|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01475|SSF46785 NJ56_RS07850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001269|IPR004653|IPR013785|IPR018517 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0003824|GO:0008033|GO:0017150|GO:0050660|GO:0055114 G3DSA:3.20.20.70|MF_02041|PF01207|PIRSF006621|PS01136|SSF51395|TIGR00742 NJ56_RS07855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014318 Phage shock protein, PspG PF09583|TIGR02975 NJ56_RS07860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002364|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS01162|SM00829|SSF50129|SSF51735 NJ56_RS07865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR007692|IPR007693|IPR007694|IPR016136|IPR027417 AAA+ ATPase domain|DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal|DNA helicase, DnaB type|DNA helicase, DnaB-like, C-terminal|DNA helicase, DnaB-like, N-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003678|GO:0005524|GO:0006260 G3DSA:1.10.860.10|G3DSA:3.40.50.300|PF00772|PF03796|SM00382|SSF48024|SSF52540|TIGR00665 NJ56_RS07870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000821|IPR001608|IPR009006|IPR011079|IPR020622|IPR029066 Alanine racemase|Alanine racemase, C-terminal|Alanine racemase, N-terminal|Alanine racemase, pyridoxal-phosphate attachment site|Alanine racemase/group IV decarboxylase, C-terminal|PLP-binding barrel GO:0003824|GO:0006522|GO:0008784 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_01201|PF00842|PF01168|PR00992|PS00395|SM01005|SSF50621|SSF51419|TIGR00492 NJ56_RS07875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000796|IPR004838|IPR004839|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Aspartate/other aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0006520|GO:0008483|GO:0009058|GO:0030170 G3DSA:3.90.1150.10|PF00155|PR00799|PS00105|SSF53383 NJ56_RS07880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007351 Uncharacterised protein YjbR PF04237|SSF142906 NJ56_RS07885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR004602|IPR017871|IPR027417 ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|UvrABC system subunit A GO:0005524|GO:0006289|GO:0009380|GO:0009381|GO:0016887 G3DSA:1.10.8.280|G3DSA:3.30.190.20|G3DSA:3.40.50.300|MF_00205|PF00005|PS00211|SSF52540|TIGR00630 NJ56_RS07890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000424|IPR011344|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein GO:0003697|GO:0006260 G3DSA:2.40.50.140|MF_00984|PF00436|PIRSF002070|SSF50249|TIGR00621 NJ56_RS07895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004045|IPR004046|IPR010987|IPR012336 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF02798|PF14497|SSF47616|SSF52833 NJ56_RS07900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PF00860 NJ56_RS07905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004705|IPR006153 Cation/H+ exchanger|Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021|GO:0055085 PF00999|TIGR00831 NJ56_RS07910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS07915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005538 LrgA/CidA family GO:0016021 PF03788 NJ56_RS07920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007300 CidB/LrgB family PF04172 NJ56_RS07925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001765|IPR015892 Carbonic anhydrase|Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 G3DSA:3.40.1050.10|PF00484|PS00704|PS00705|SM00947|SSF53056 NJ56_RS07930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004960|IPR011920|IPR030857 Bacterial lipid A biosynthesis acyltransferase|Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase|Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009245|GO:0009409|GO:0016021|GO:0016740|GO:0036104 MF_01942|MF_01943|PF03279|PIRSF026649|TIGR02207 NJ56_RS07940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002197|IPR005412|IPR009057 DNA binding HTH domain, Fis-type|DNA-binding protein Fis|Homeobox domain-like GO:0003677|GO:0006355|GO:0043565 G3DSA:1.10.10.60|MF_00166|PF02954|PIRSF002097|PR01590|PR01591|SSF46689 NJ56_RS07945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001269|IPR004652|IPR013785|IPR018517|IPR024036|IPR032887 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase B|tRNA-dihydrouridine synthase, TIM-barrel, NifR3|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine synthase, putative, C-terminal GO:0002943|GO:0003824|GO:0008033|GO:0016491|GO:0017150|GO:0050660|GO:0055114 G3DSA:1.10.1200.80|G3DSA:3.20.20.70|MF_02042|PF01207|PIRSF006621|PS01136|SSF51395|TIGR00737 NJ56_RS07950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004498|IPR029063 Ribosomal protein L11 methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0006479|GO:0008276 G3DSA:3.40.50.150|MF_00735|PF06325|PIRSF000401|SSF53335|TIGR00406 NJ56_RS07955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001734|IPR011849|IPR018212 Sodium/pantothenate symporter|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0015081|GO:0015233|GO:0015887|GO:0016020|GO:0016021|GO:0031402|GO:0055085|GO:0071436 PF00474|PS00456|PS00457|TIGR00813|TIGR02119 NJ56_RS07960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010398 Protein of unknown function DUF997 PD745092|PF06196 NJ56_RS07965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004549|IPR005479|IPR005481|IPR005482|IPR011054|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|Acetyl-CoA carboxylase, biotin carboxylase|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif GO:0003824|GO:0005524|GO:0016874 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF02785|PF02786|PS00866|PS00867|SM00878|SSF51246|SSF52440|SSF56059|TIGR00514 NJ56_RS07970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000089|IPR001249|IPR001882|IPR011053 Acetyl-CoA biotin carboxyl carrier|Biotin-binding site|Biotin/lipoyl attachment|Single hybrid motif GO:0003989|GO:0006633|GO:0009317 G3DSA:2.40.50.100|PF00364|PR01071|PS00188|SSF51230|TIGR00531 NJ56_RS07975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001874|IPR018509 Dehydroquinase, class II|Dehydroquinase, class II, conserved site GO:0003855 G3DSA:3.40.50.9100|MF_00169|PD004527|PF01220|PIRSF001399|PS01029|SSF52304|TIGR01088 NJ56_RS07980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013130|IPR022837 Ferric reductase transmembrane component-like domain|Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 MF_01207|PF01794 NJ56_RS07985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000572|IPR022867 Oxidoreductase, molybdopterin-binding domain|Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0042128|GO:0043546|GO:0055114 G3DSA:3.90.420.10|MF_01206|PF00174|SSF56524 NJ56_RS07990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011032|IPR013149|IPR013154|IPR014188|IPR016040|IPR020843 Acrylyl-CoA reductase AcuI|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735|TIGR02823 NJ56_RS07995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000160|IPR001633|IPR029787|IPR033423 EAL domain|GGDEF domain|Gammaproteobacterial periplasmic sensor domain GAPES4|Nucleotide cyclase G3DSA:3.20.20.450|G3DSA:3.30.70.270|PF00563|PF00990|PF17157|SM00052|SM00267|SSF141868|SSF55073 NJ56_RS08000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004753 Cell shape determining protein MreB GO:0000902 G3DSA:3.30.420.40|G3DSA:3.90.640.10|PF06723|PR01652|SSF53067|TIGR00904 NJ56_RS08005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007221 Rod shape-determining protein MreC GO:0008360 PF04085|PIRSF038471|TIGR00219 NJ56_RS08010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007227|IPR026034 Cell shape-determining protein MreD|Cell shape-determining protein MreD, proteobacterial type GO:0008360|GO:0016021 PF04093|PIRSF018472|TIGR03426 NJ56_RS08015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003697|IPR029001 Inosine triphosphate pyrophosphatase-like|Maf-like protein GO:0047429 G3DSA:3.90.950.10|MF_00528|PF02545|PIRSF006305|SSF52972|TIGR00172 NJ56_RS08020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003029|IPR004659|IPR012340|IPR019307|IPR022967 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding protein AU-1/Ribonuclease E/G|Ribonuclease E/G|S1 domain GO:0003676|GO:0003723|GO:0004540|GO:0006396 G3DSA:2.40.50.140|PF00575|PF10150|SM00316|SSF50249|TIGR00757 NJ56_RS08025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011836|IPR025263|IPR032712 AsmA-like, C-terminal|Conserved hypothetical protein CHP02099|Domain of unknown function DUF3971 PF13116|PF13502|TIGR02099 NJ56_RS08030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 G3DSA:3.60.110.10|PF00795|SSF56317 NJ56_RS08035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002510|IPR025502|IPR035068 Metalloprotease TldD/PmbA|Metalloprotease TldD/PmbA, N-terminal domain|TldD GO:0006508|GO:0008237 G3DSA:3.30.2290.10|PF01523|PIRSF004919|SSF111283 NJ56_RS08040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS08045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012451 Protein of unknown function DUF1656 MF_01546|PF07869 NJ56_RS08050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006143|IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA|RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 G3DSA:2.40.50.100|MF_01544|PF13437|PF13533|SSF111369|TIGR01730 NJ56_RS08055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006726|IPR023706 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein|Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0006810 MF_01545|PF04632 NJ56_RS08060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010102|IPR015590|IPR016160|IPR016161|IPR016162|IPR029510 Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase|Succinate semialdehyde dehydrogenase GO:0008152|GO:0009013|GO:0009450|GO:0016491|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720|TIGR01780 NJ56_RS08065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000026|IPR001887|IPR016191 Barnase|Guanine-specific ribonuclease N1/T1/U2|Ribonuclease/ribotoxin GO:0003723|GO:0004521|GO:0004540 G3DSA:3.10.450.30|PF00545|PIRSF001013|PR00117|SSF53933 NJ56_RS08070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000468 Barstar (barnase inhibitor) G3DSA:3.30.370.10|PF01337|SSF52038 NJ56_RS08075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006839|IPR023153 PSPTO4464-like domain|Ribosome-associated, YjgA G3DSA:1.10.60.30|MF_00765|PF04751|PIRSF016183|SSF158710 NJ56_RS08080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002510|IPR035068 Metalloprotease TldD/PmbA|Metalloprotease TldD/PmbA, N-terminal domain GO:0006508|GO:0008237 G3DSA:3.30.2290.10|PF01523|SSF111283 NJ56_RS08085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009155|IPR010980 Cytochrome b562|Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 G3DSA:1.20.120.10|PF07361|PIRSF000029|SSF47175 NJ56_RS08090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001437|IPR023459|IPR028625|IPR029462 Regulator of nucleoside diphosphate kinase|Regulator of nucleoside diphosphate kinase, N-terminal domain|Transcription elongation factor GreA/GreB family|Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784|GO:0065007|GO:0070063 G3DSA:1.10.286.20|G3DSA:3.10.50.30|MF_00954|PF01272|PF14760|PIRSF006092|SSF54534 NJ56_RS08105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001757|IPR004014|IPR006415|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299 Cation-transporting P-type ATPase, N-terminal|HAD-like domain|P-type ATPase|P-type ATPase, transmembrane domain|P-type ATPase, A domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IIIB GO:0000166|GO:0015444|GO:0015693|GO:0016021 G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|PF00122|PF00690|PF00702|PR01836|PS00154|SM00831|SSF56784|SSF81653|SSF81660|SSF81665|TIGR01494|TIGR01524 NJ56_RS08110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR011991|IPR012771|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I|Trehalose operon repressor|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0005991|GO:0006355|GO:0045892 G3DSA:1.10.10.10|G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PR00036|PS00356|SM00354|SSF47413|SSF53822|TIGR02405 NJ56_RS08115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001996|IPR003352|IPR011296|IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site|Phosphotransferase system, EIIC|Phosphotransferase system, IIB component, type 1|Phosphotransferase system, trehalose-specific IIBC component GO:0008982|GO:0009401|GO:0015574|GO:0015771|GO:0016020|GO:0016021 G3DSA:3.30.1360.60|PF00367|PF02378|PS01035|SSF55604|TIGR00826|TIGR01992 NJ56_RS08120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006047|IPR012769|IPR017853|IPR032091 Glycoside hydrolase superfamily|Glycosyl hydrolase, family 13, catalytic domain|Maltogenic Amylase, C-terminal|Trehalose-6-phosphate hydrolase GO:0003824|GO:0005737|GO:0005975|GO:0005993|GO:0008788 G3DSA:2.60.40.1180|G3DSA:3.20.20.80|PF00128|PF16657|SM00642|SSF51011|SSF51445|TIGR02403 NJ56_RS08125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006056|IPR006175|IPR013813|IPR019897 Endoribonuclease L-PSP/chorismate mutase-like|RidA family|RidA, conserved site|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|PS01094|SSF55298|TIGR00004 NJ56_RS08130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002801|IPR020542|IPR020545 Aspartate carbamoyltransferase regulatory subunit, C-terminal|Aspartate carbamoyltransferase regulatory subunit, N-terminal|Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 G3DSA:2.30.30.20|G3DSA:3.30.70.140|MF_00002|PD006194|PF01948|PF02748|SSF54893|SSF57825|TIGR00240 NJ56_RS08135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002082|IPR006130|IPR006131|IPR006132 Aspartate carbamoyltransferase|Aspartate/ornithine carbamoyltransferase|Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain|Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0004070|GO:0006207|GO:0006520|GO:0016597|GO:0016743 G3DSA:3.40.50.1370|MF_00001|PF00185|PF02729|PR00100|PR00101|PS00097|SSF53671|TIGR00670 NJ56_RS08140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000032|IPR001020 Phosphocarrier protein HPr-like|Phosphotransferase system, HPr histidine phosphorylation site G3DSA:3.30.1340.10|PF00381|PR00107|PS00369|SSF55594|TIGR01003 NJ56_RS08145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005337|IPR027417 P-loop containing nucleoside triphosphate hydrolase|RapZ-like family GO:0005524 G3DSA:3.40.50.300|MF_00636|PF03668|PIRSF005052|SSF52540 NJ56_RS08150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002178|IPR006320|IPR016152 PTS EIIA type-2 domain|Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN|Phosphotransferase/anion transporter GO:0005215|GO:0006810|GO:0008982|GO:0009401 G3DSA:3.40.930.10|PF00359|PS00372|SSF55804|TIGR01419 NJ56_RS08155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 G3DSA:3.30.160.100|PF02482|SSF69754|TIGR00741 NJ56_RS08160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000394|IPR007046|IPR007634|IPR011991 RNA polymerase sigma factor 54|RNA polymerase sigma factor 54, DNA-binding|RNA polymerase sigma factor 54, core-binding|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|PF00309|PF04552|PF04963|PIRSF000774|PR00045|PS00717|PS00718|TIGR02395 NJ56_RS08165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030921|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|LPS export ABC transporter, ATP-binding protein LptB|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0043190|GO:0055085 G3DSA:3.40.50.300|PF00005|PF12399|PS00211|SM00382|SSF52540|TIGR04406 NJ56_RS08170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005653|IPR014340 Lipopolysaccharide export system protein LptA|Organic solvent tolerance-like, N-terminal GO:0001530|GO:0015920|GO:0042597 G3DSA:2.60.450.10|MF_01914|PF03968|TIGR03002 NJ56_RS08175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010664|IPR026265 Lipopolysaccharide assembly, LptC-related|Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 G3DSA:2.60.450.10|MF_01915|PF06835|PIRSF028513|TIGR04409 NJ56_RS08180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010023|IPR023214 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase|HAD-like domain GO:0019143 G3DSA:3.40.50.1000|PF08282|PIRSF006118|SSF56784|TIGR01670 NJ56_RS08185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR001347|IPR004800 CBS domain|Phosphosugar isomerase, KdsD/KpsF-type|Sugar isomerase (SIS) GO:0005975|GO:0016853|GO:0097367|GO:1901135 G3DSA:3.10.580.10|G3DSA:3.40.50.10490|PF00571|PF01380|PIRSF004692|SSF53697|TIGR00393 NJ56_RS08190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004481|IPR004837 Sodium/calcium exchanger membrane region|Sodium/potassium/calcium exchanger GO:0016021|GO:0055085 PF01699|TIGR00367 NJ56_RS08195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS08200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003453|IPR030802 ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE GO:0006810|GO:0043190 PF02405|TIGR00056 NJ56_RS08205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003399|IPR030970 Mce/MlaD|Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 PF02470|TIGR04430 NJ56_RS08210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC G3DSA:3.10.450.50|PF05494|PIRSF004649 NJ56_RS08215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002645 STAS domain G3DSA:3.30.750.24|PF13466|SSF52091 NJ56_RS08220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002634 BolA protein G3DSA:3.30.300.90|PF01722|PIRSF003113|SSF82657 NJ56_RS08225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001986|IPR005750|IPR013792 Enolpyruvate transferase domain|RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta|UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0003824|GO:0008760|GO:0016765|GO:0019277 G3DSA:3.65.10.10|MF_00111|PF00275|SSF55205|TIGR01072 NJ56_RS08230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001478|IPR001940|IPR009003|IPR011783 PDZ domain|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, DegS GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.10|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02038 NJ56_RS08235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001478|IPR001940|IPR009003|IPR011782 PDZ domain|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.10|PF00595|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02037 NJ56_RS08240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009386 Protein of unknown function DUF1043 PF06295|PIRSF006318 NJ56_RS08245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005654|IPR027417|IPR030870 ATPase, AFG1-like|Cell division protein ZapE|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0051301 G3DSA:3.40.50.300|MF_01919|PF03969|SSF52540 NJ56_RS08255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005822|IPR005823|IPR023563 Ribosomal protein L13|Ribosomal protein L13, bacterial-type|Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 G3DSA:3.90.1180.10|MF_01366|PF00572|PIRSF002181|PS00783|SSF52161|TIGR01066 NJ56_RS08260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000754|IPR014721|IPR020568|IPR020574|IPR023035 Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S9|Ribosomal protein S9, bacterial/plastid|Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 G3DSA:3.30.230.10|MF_00532_B|PF00380|PS00360|SSF54211 NJ56_RS08265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004045|IPR004046|IPR010987|IPR012336 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 NJ56_RS08270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007481 Stringent starvation protein B G3DSA:2.30.30.220|PF04386|PIRSF005276|SSF101738 NJ56_RS08280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006006|IPR009051|IPR023753|IPR028261 Alpha-helical ferredoxin|Dihydroprymidine dehydrogenase domain II|FAD/NAD(P)-binding domain|Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016491|GO:0016639|GO:0051536|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF07992|PF14691|PR00419|SSF46548|SSF51971|TIGR01318 NJ56_RS08285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002489|IPR002932|IPR006982|IPR013785|IPR017932|IPR029055 Aldolase-type TIM barrel|Glutamate synthase domain|Glutamate synthase, alpha subunit, C-terminal|Glutamate synthase, central-N|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal GO:0003824|GO:0006537|GO:0006807|GO:0008152|GO:0015930|GO:0016491|GO:0016638|GO:0055114 G3DSA:2.160.20.60|G3DSA:3.20.20.70|G3DSA:3.60.20.10|PF00310|PF01493|PF01645|PF04898|SSF51395|SSF56235|SSF69336 NJ56_RS08290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005911|IPR006638|IPR007197|IPR013785|IPR032432 Aldolase-type TIM barrel|Elongator protein 3/MiaB/NifB|Protein YhcC-like|Radical SAM|Radical SAM, C-terminal extension GO:0003824|GO:0051536 G3DSA:3.20.20.70|PF04055|PF16199|SM00729|SSF102114|TIGR01212 NJ56_RS08295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR001789|IPR003594|IPR003661|IPR004358|IPR008207|IPR011006|IPR013767|IPR014409|IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain|CheY-like superfamily|Histidine kinase-like ATPase, C-terminal domain|PAS domain|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0006355|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.10.287.970|G3DSA:1.20.120.160|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF00512|PF00989|PF01627|PF02518|PIRSF003182|PR00344|SM00073|SM00091|SM00387|SM00388|SM00448|SSF47226|SSF47384|SSF52172|SSF55785|SSF55874|TIGR00229 NJ56_RS08305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026041|IPR029062 Class I glutamine amidotransferase-like|Glyoxalase ElbB G3DSA:3.40.50.880|PIRSF006320|SSF52317 NJ56_RS08310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001264|IPR011812|IPR023346 Biosynthetic peptidoglycan transglycosylase|Glycosyl transferase, family 51|Lysozyme-like domain GO:0009252|GO:0009274|GO:0016021|GO:0016763 G3DSA:1.10.3810.10|MF_00766|PF00912|SSF53955|TIGR02070 NJ56_RS08315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 NJ56_RS08320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001347|IPR023070 DnaA initiator-associating protein|Sugar isomerase (SIS) GO:0097367|GO:1901135 G3DSA:3.40.50.10490|MF_01157|PF13580|SSF53697 NJ56_RS08325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003509|IPR011335 Restriction endonuclease type II-like|Uncharacterised protein family UPF0102 G3DSA:3.40.1350.10|MF_00048|PF02021|SSF52980|TIGR00252 NJ56_RS08330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007443|IPR028082 Penicillin-binding protein activator LpoA|Periplasmic binding protein-like I G3DSA:3.40.50.2300|MF_01890|PF04348|SSF53822 NJ56_RS08335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000878|IPR008189|IPR014776|IPR014777|IPR018063 SAM-dependent methyltransferase RsmI, conserved site|Tetrapyrrole methylase|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|rRNA small subunit methyltransferase I GO:0008152|GO:0008168 G3DSA:3.30.950.10|G3DSA:3.40.1010.10|MF_01877|PF00590|PIRSF005917|PS01296|SSF53790|TIGR00096 NJ56_RS08345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003829|IPR011051|IPR012093|IPR014710 Pirin|Pirin, N-terminal domain|RmlC-like cupin domain|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PIRSF006232|SSF51182 NJ56_RS08350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS08355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032808 DoxX family PF07681 NJ56_RS08360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025612 YqjK-like protein PF13997 NJ56_RS08365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009937 Putative Actinobacterial Holin-X, holin superfamily III PF07332 NJ56_RS08370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010279 Protein of unknown function DUF883, ElaB G3DSA:1.20.5.1230|PF05957 NJ56_RS08375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009468 Protein of unknown function DUF1090 PF06476 NJ56_RS08380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026574|IPR027398 Modulator protein MzrA|SecD export protein N-terminal TM domain MF_00904|PF13721 NJ56_RS08385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032816 SNARE associated Golgi protein PF09335 NJ56_RS08395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000524|IPR008920|IPR011711|IPR011991 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 NJ56_RS08400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS08405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003766|IPR032466 Metal-dependent hydrolase|Uronate isomerase GO:0006064|GO:0008880 G3DSA:3.20.20.140|MF_00675|PF02614|SSF51556 NJ56_RS08410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008927|IPR013118|IPR013131|IPR013328|IPR016040 6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Mannitol dehydrogenase, C-terminal|Mannitol dehydrogenase, N-terminal|NAD(P)-binding domain GO:0016491|GO:0050662|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF01232|PF08125|SSF48179|SSF51735 NJ56_RS08415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007392|IPR013974 D-galactarate/Altronate dehydratase, C-terminal|SAF domain GO:0016829 PF04295|PF08666|SM00858 NJ56_RS08420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019629|IPR026267 Inner membrane protein YgjV|Uncharacterised protein family HI1736/YgjV PF10688|PIRSF011443 NJ56_RS08425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001991|IPR023025 Serine/threonine transporter SstT|Sodium:dicarboxylate symporter GO:0015293|GO:0015826|GO:0016021|GO:0032329 G3DSA:1.10.3860.10|MF_01582|PF00375|PR00173|SSF118215 NJ56_RS08430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005496|IPR022369 Integral membrane protein TerC|Integral membrane protein TerC, riboswitch-linked GO:0016021 PF03741|TIGR03718 NJ56_RS08435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000683|IPR016040 NAD(P)-binding domain|Oxidoreductase, N-terminal GO:0016491 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF01408|SSF51735|SSF55347 NJ56_RS08440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002725 Protein of unknown function DUF45 PF01863 NJ56_RS08445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005546|IPR006315|IPR011050|IPR012332|IPR013425 Autotransporter beta-domain|Autotransporter-associated beta strand repeat|Outer membrane autotransporter barrel|P22 tailspike C-terminal domain-like|Pectin lyase fold/virulence factor GO:0019867 G3DSA:2.160.20.20|G3DSA:2.40.128.130|PF03797|PF12951|SM00869|SSF103515|SSF51126|TIGR01414|TIGR02601 NJ56_RS08450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR007848|IPR017237|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|S-adenosyl-L-methionine-dependent methyltransferase|rRNA (guanine-N2-)-methyltransferase, RsmD GO:0003676|GO:0005737|GO:0008168|GO:0008990|GO:0031167|GO:0032259 G3DSA:3.40.50.150|MF_01859|PF05175|PIRSF037565|PS00092|SSF53335 NJ56_RS08455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001155|IPR013785|IPR023753 Aldolase-type TIM barrel|FAD/NAD(P)-binding domain|NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF00724|PF07992|PR00368|PR00411|SSF51395|SSF51905|SSF51971 NJ56_RS08460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005565|IPR013686|IPR027282|IPR035251 Haemolysin activator HlyB, C-terminal|Polypeptide-transport-associated, ShlB-type|ShlB, POTRA domain|Two partner secretion pathway transporter GO:0015031 G3DSA:2.40.160.50|G3DSA:3.10.20.310|PF03865|PF08479|PF17287|PIRSF029745 NJ56_RS08475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 PF08845 NJ56_RS08480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 NJ56_RS08485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002694|IPR011991|IPR013264 DNA primase, catalytic core, N-terminal|Winged helix-turn-helix DNA-binding domain|Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 G3DSA:1.10.10.10|G3DSA:3.40.1360.10|G3DSA:3.90.580.10|G3DSA:3.90.980.10|PF01807|PF13155|SM00400|SSF56731|SSF57783 NJ56_RS08490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762|IPR023109 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 NJ56_RS08510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 PF08845 NJ56_RS08515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 NJ56_RS08520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002694|IPR011991|IPR013264 DNA primase, catalytic core, N-terminal|Winged helix-turn-helix DNA-binding domain|Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 G3DSA:1.10.10.10|G3DSA:3.40.1360.10|G3DSA:3.90.580.10|G3DSA:3.90.980.10|PF01807|PF13155|SM00400|SSF56731|SSF57783 NJ56_RS08525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 NJ56_RS08530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002694|IPR011991|IPR013264 DNA primase, catalytic core, N-terminal|Winged helix-turn-helix DNA-binding domain|Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 G3DSA:1.10.10.10|G3DSA:3.40.1360.10|G3DSA:3.90.580.10|G3DSA:3.90.980.10|PF01807|PF13155|SM00400|SSF56731|SSF57783 NJ56_RS08535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762|IPR023109 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 NJ56_RS08555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 G3DSA:2.10.260.10|PF08845 NJ56_RS08565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018958 Knr4/Smi1-like domain G3DSA:3.40.1580.10|PF14567|SM00860|SSF160631 NJ56_RS08585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024409 Protein of unknown function DUF3833 PF12915 NJ56_RS08590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003333|IPR029063 Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008610 G3DSA:3.40.50.150|PF02353|PIRSF003085|SSF53335 NJ56_RS08595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010775 Protein of unknown function DUF1365 PF07103 NJ56_RS08600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002937|IPR023753 Amine oxidase|FAD/NAD(P)-binding domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.660.20|PF01593|SSF51905 NJ56_RS08605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR016040|IPR020904 NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00081|PS00061|SSF51735 NJ56_RS08610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009959|IPR032710 NTF2-like domain|Polyketide cyclase SnoaL-like domain G3DSA:3.10.450.50|PF12680|SSF54427 NJ56_RS08620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027379 Cardiolipin synthase N-terminal PF13396 NJ56_RS08630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000943|IPR007127|IPR007624|IPR007627|IPR007630|IPR007631|IPR009042|IPR011991|IPR012760|IPR013324|IPR013325|IPR014284|IPR028630 RNA polymerase sigma factor 70, non-essential domain|RNA polymerase sigma factor 70, region 1.1|RNA polymerase sigma factor RpoD|RNA polymerase sigma factor RpoD, C-terminal|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.601.10|MF_00963|PF00140|PF03979|PF04539|PF04542|PF04545|PF04546|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02393|TIGR02937 NJ56_RS08635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002694|IPR006171|IPR006295|IPR013173|IPR013264|IPR016136|IPR019475|IPR030846 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal|DNA primase DnaG, DnaB-binding domain|DNA primase DnaG, bacteria|DNA primase, DnaB-helicase binding domain|DNA primase, DnaG|DNA primase, catalytic core, N-terminal|TOPRIM domain|Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0006269|GO:0008270|GO:0016779 G3DSA:1.10.860.10|G3DSA:1.20.50.20|G3DSA:3.40.1360.20|G3DSA:3.90.580.10|G3DSA:3.90.980.10|MF_00974|PF01807|PF08275|PF08278|PF10410|PF13155|PIRSF002811|SM00400|SM00493|SM00766|SSF117023|SSF56731|SSF57783|TIGR01391 NJ56_RS08640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001911|IPR018278 Ribosomal protein S21|Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.5.1150|MF_00358|PD005521|PF01165|PR00976|PS01181|TIGR00030 NJ56_RS08645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000905|IPR017860|IPR017861|IPR022450 Gcp-like domain|Kae1/TsaD family|Peptidase M22, conserved site|tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 G3DSA:3.30.420.40|MF_01445|PF00814|PR00789|PS01016|SSF53067|TIGR00329|TIGR03723 NJ56_RS08650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 MF_01043|PF02660|SM01207|TIGR00023 NJ56_RS08655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006156|IPR006157 Dihydroneopterin aldolase|Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 G3DSA:3.30.1130.10|PF02152|SM00905|SSF55620|TIGR00525|TIGR00526 NJ56_RS08660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 MF_01006|PF02673|TIGR00753 NJ56_RS08665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002646|IPR003607|IPR006674|IPR012006|IPR032828 HD domain|HD/PDEase domain|Poly A polymerase, head domain|tRNA nucleotidyltransferase, proteobacteria|tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain GO:0001680|GO:0003723|GO:0004810|GO:0005524|GO:0006396|GO:0016779 G3DSA:1.10.3090.10|G3DSA:3.30.460.10|MF_01261|MF_01262|PF01743|PF01966|PF12627|PIRSF000813|SM00471|SSF81301|SSF81891 NJ56_RS08670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003646|IPR016476 SH3 domain protein|SH3-like domain, bacterial-type G3DSA:1.20.5.50|G3DSA:2.30.30.410|PF08239|PIRSF006158|SM00287|TIGR04211 NJ56_RS08675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023577|IPR033469 CYTH domain|CYTH-like domain G3DSA:2.40.320.10|PF01928|SM01118|SSF55154 NJ56_RS08680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005190|IPR013546|IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme|Glutamate-ammonia ligase adenylyltransferase, repeated domain|PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0008882|GO:0016779 G3DSA:1.10.4050.10|G3DSA:1.20.120.330|G3DSA:3.30.460.10|MF_00802|PF03710|PF08335|SSF81301|SSF81593 NJ56_RS08685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002173|IPR004821|IPR011611|IPR011913|IPR011914|IPR014729|IPR023030|IPR029056 Bifunctional protein HldE|Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Cytidyltransferase-like domain|RfaE bifunctional protein, domain I|RfaE bifunctional protein, domain II|Ribokinase-like|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0005975|GO:0009058|GO:0016773|GO:0016779 G3DSA:3.40.1190.20|G3DSA:3.40.50.620|MF_01603|PF00294|PF01467|PS00583|SSF52374|SSF53613|TIGR00125|TIGR02198|TIGR02199 NJ56_RS08695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007475 Membrane fusogenic activity PF04380 NJ56_RS08700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000422|IPR017945 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB|DHBP synthase RibB-like alpha/beta domain GO:0008686|GO:0009231 G3DSA:3.90.870.10|MF_00180|PF00926|SSF55821|TIGR00506 NJ56_RS08705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004183|IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type|Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0008270|GO:0016491|GO:0016701|GO:0055114 G3DSA:3.40.830.10|PF02900|PIRSF006157|SSF53213 NJ56_RS08710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005494|IPR016185 Glutathionylspermidine synthase, pre-ATP-grasp-like domain|Pre-ATP-grasp domain PF03738|SSF52440|SSF56059 NJ56_RS08715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009576 Biofilm formation YgiB MF_01188|PF06693 NJ56_RS08720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003423|IPR010130 Outer membrane efflux protein|Type I secretion outer membrane protein, TolC GO:0005215|GO:0006810|GO:0019867 G3DSA:1.20.1600.10|PF02321|SSF56954|TIGR01844 NJ56_RS08725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR004385|IPR015797|IPR020084 NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site|Nucleoside diphosphate pyrophosphatase GO:0016787|GO:0016818|GO:0046872 G3DSA:3.90.79.10|PF00293|PS00893|SSF55811|TIGR00052 NJ56_RS08730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009659 Protein of unknown function DUF1249 PF06853 NJ56_RS08735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004843|IPR013622|IPR026575|IPR029052 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal|3,5-cyclic adenosine monophosphate phosphodiesterase CpdA|Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0004115|GO:0016787 G3DSA:3.60.21.10|MF_00905|PD587589|PF00149|SSF56300 NJ56_RS08740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008886|IPR029058 Alpha/Beta hydrolase fold|Uncharacterised protein family UPF0227/Esterase YqiA G3DSA:3.40.50.1820|PF05728|SSF53474 NJ56_RS08745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001241|IPR002288|IPR003594|IPR005737|IPR006171|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568 DNA gyrase B subunit, C-terminal|DNA topoisomerase IV, subunit B, Gram-negative|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, central domain|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain|Histidine kinase-like ATPase, C-terminal domain|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|TOPRIM domain GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_00938|PF00204|PF00986|PF01751|PF02518|PR00418|PR01098|PS00177|SM00387|SM00433|SSF54211|SSF55874|SSF56719|TIGR01055 NJ56_RS08750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS08755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003680|IPR029039 Flavodoxin-like fold|Flavoprotein-like domain G3DSA:3.40.50.360|PF02525|SSF52218 NJ56_RS08765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002205|IPR005742|IPR006691|IPR013757|IPR013758|IPR013760|IPR024946|IPR035516 Arginine repressor C-terminal-like domain|DNA gyrase/topoisomerase IV, subunit A, C-terminal|DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat|DNA topoisomerase IV, subunit A, Gram-negative|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain|Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265 G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.30.1360.40|G3DSA:3.90.199.10|MF_00936|PF00521|PF03989|SM00434|SSF101904|SSF56719|TIGR01062 NJ56_RS08770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002123|IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase|Phospholipid/glycerol acyltransferase GO:0003841|GO:0008152|GO:0008654|GO:0016020|GO:0016746 G3DSA:3.40.1130.10|PF01553|SM00563|SSF69593|TIGR00530 NJ56_RS08775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008972|IPR011706|IPR011707|IPR026589 Cell division protein FtsP|Cupredoxin|Multicopper oxidase, type 2|Multicopper oxidase, type 3 GO:0005507|GO:0016491|GO:0043093|GO:0055114 G3DSA:2.60.40.420|MF_00915|PF07731|PF07732|SSF49503 NJ56_RS08780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006638|IPR007197|IPR013704|IPR013785|IPR020612|IPR022946|IPR024560 Aldolase-type TIM barrel|Elongator protein 3/MiaB/NifB|Methylthiotransferase, conserved site|Radical SAM|Uncharacterised protein family UPF0313|Uncharacterised protein family UPF0313, C-terminal|Uncharacterised protein family UPF0313, N-terminal GO:0003824|GO:0051536|GO:0051539 G3DSA:3.20.20.70|G3DSA:3.40.50.280|MF_01251|PF04055|PF08497|PF11842|PS01278|SM00729|SSF102114|TIGR03904 NJ56_RS08785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018170|IPR020471|IPR023210 Aldo/keto reductase|Aldo/keto reductase, conserved site|NADP-dependent oxidoreductase domain GO:0016491|GO:0055114 G3DSA:3.20.20.100|PF00248|PIRSF000097|PR00069|PS00062|PS00063|SSF51430 NJ56_RS08790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001670|IPR018211 Alcohol dehydrogenase, iron-type|Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|PF00465|PS00060|PS00913|SSF56796 NJ56_RS08795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR009594|IPR018060 DNA binding HTH domain, AraC-type|Homeobox domain-like|Transcription regulator HTH, AraC, N-terminal GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF06719|PF12833|SM00342|SSF46689 NJ56_RS08800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032816 SNARE associated Golgi protein PF09335 NJ56_RS08805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000277|IPR006233|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Cystathionine beta-lyase, bacterial|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0004121|GO:0005737|GO:0006520|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383|TIGR01324 NJ56_RS08810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002898|IPR014164 MotA/TolQ/ExbB proton channel|TonB-system energizer ExbB type-1 GO:0006810|GO:0008565|GO:0016020 PF01618|TIGR02797 NJ56_RS08815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003400|IPR014170 Biopolymer transport protein ExbD/TolR|TonB system transport protein ExbD type-1 GO:0005215|GO:0006810|GO:0016020 PF02472|TIGR02803 NJ56_RS08820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002035 von Willebrand factor, type A G3DSA:3.40.50.410|SSF53300 NJ56_RS08825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031582 Putative tight adherence pilin protein F PF16964 NJ56_RS08830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012495 TadE-like PF07811 NJ56_RS08835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990 Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.40.10|SSF48452 NJ56_RS08840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018076 Type II secretion system F domain PF00482 NJ56_RS08845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018076 Type II secretion system F domain PF00482 NJ56_RS08850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001482|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type II secretion system protein E GO:0005524|GO:0006810 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|SSF52540 NJ56_RS08855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 NJ56_RS08865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001775|IPR004846|IPR032789 GspD/PilQ family|Pilus formation protein, N-terminal|Type II/III secretion system GO:0009306 PF00263|PF13629|PR00811|PR01032 NJ56_RS08875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 PF01478 NJ56_RS08885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SSF46894 NJ56_RS08890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013708|IPR016040 NAD(P)-binding domain|Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 G3DSA:3.40.50.10860|G3DSA:3.40.50.720|PF08501|SSF51735|SSF53223 NJ56_RS08895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000531|IPR010105|IPR012910 TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain|TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0006810|GO:0015891|GO:0016020 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01783 NJ56_RS08900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000801|IPR013783|IPR014756|IPR021764|IPR029058 Alpha/Beta hydrolase fold|Enterochelin esterase, N-terminal|Immunoglobulin E-set|Immunoglobulin-like fold|Putative esterase GO:0005506|GO:0005737|GO:0006826|GO:0008849 G3DSA:2.60.40.10|G3DSA:3.40.50.1820|PF00756|PF11806|SSF53474|SSF81296 NJ56_RS08905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005153 MbtH-like protein G3DSA:3.90.820.10|PF03621|SM00923|SSF160582 NJ56_RS08910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR001031|IPR001242|IPR006162|IPR009081|IPR010071|IPR020802|IPR020806|IPR020845|IPR025110|IPR029058 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Alpha/Beta hydrolase fold|Amino acid adenylation domain|Condensation domain|Phosphopantetheine attachment site|Phosphopantetheine binding ACP domain|Polyketide synthase, phosphopantetheine-binding domain|Polyketide synthase, thioesterase domain|Thioesterase GO:0003824|GO:0008152|GO:0009058|GO:0016788|GO:0031177 G3DSA:1.10.1200.10|G3DSA:2.30.38.10|G3DSA:3.30.1110.20|G3DSA:3.30.300.30|G3DSA:3.30.559.10|G3DSA:3.40.50.1820|G3DSA:3.40.50.980|PF00501|PF00550|PF00668|PF00975|PF13193|PS00012|PS00455|SM00823|SM00824|SSF47336|SSF52777|SSF53474|SSF56801|TIGR01733 NJ56_RS08920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS08925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000522|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD-like|ABC transporter, FecCD/TroCD-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 NJ56_RS08930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000522|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD-like|ABC transporter, FecCD/TroCD-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 NJ56_RS08935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS08940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002491 ABC transporter periplasmic binding domain GO:0005488 G3DSA:3.40.50.1980|PF01497|SSF53807 NJ56_RS08945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004561|IPR005801|IPR015890 ADC synthase|Chorismate-utilising enzyme, C-terminal|Isochorismate synthase GO:0008909|GO:0009058 G3DSA:3.60.120.10|PF00425|SSF56322|TIGR00543 NJ56_RS08950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR011963|IPR020845|IPR025110 2,3-dihydroxybenzoate-AMP ligase|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824|GO:0008152|GO:0008668|GO:0019290 G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|SSF56801|TIGR02275 NJ56_RS08955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000868|IPR009081|IPR016291 Isochorismatase|Isochorismatase-like|Phosphopantetheine binding ACP domain GO:0003824|GO:0008152|GO:0008908 G3DSA:1.10.1200.10|G3DSA:3.40.50.850|PF00550|PF00857|PIRSF001111|PR01398|SSF47336|SSF52499 NJ56_RS08960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR003560|IPR016040|IPR020904 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0008667|GO:0016491|GO:0019290|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR01397|PS00061|SSF51735|TIGR04316 NJ56_RS08965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR020845 AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824|GO:0008152 G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PS00455|SSF56801 NJ56_RS08970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000634|IPR001926|IPR005789 Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Threonine dehydratase, catabolic|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004794|GO:0006520|GO:0006567|GO:0030170 G3DSA:3.40.50.1100|PF00291|PS00165|SSF53686|TIGR01127 NJ56_RS08975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004694|IPR013057|IPR023726 Amino acid transporter, transmembrane domain|Hydroxy amino acid transporter|Threonine/serine transporter TdcC GO:0005215|GO:0006810|GO:0015565|GO:0015826|GO:0016021|GO:0022889|GO:0032329 MF_01583|PF01490|TIGR00814 NJ56_RS08980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000890|IPR004372|IPR023865|IPR024917 Acetate/propionate kinase|Aliphatic acid kinase, short-chain|Aliphatic acid kinase, short-chain, conserved site|Propionate kinase GO:0005622|GO:0006082|GO:0008152|GO:0016301|GO:0016310|GO:0016774 G3DSA:3.30.420.40|MF_00020|MF_01881|PF00871|PIRSF000722|PR00471|PS01075|PS01076|SSF53067|TIGR00016 NJ56_RS08985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001150|IPR004184|IPR005949|IPR019777 Formate C-acetyltransferase glycine radical, conserved site|Formate acetyltransferase|Glycine radical domain|Pyruvate formate lyase domain GO:0003824|GO:0005737|GO:0005975|GO:0008152|GO:0008861 G3DSA:3.20.70.20|PF01228|PF02901|PIRSF000379|PS00850|SSF51998|TIGR01255 NJ56_RS08990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002173|IPR011611|IPR017583|IPR023314|IPR029056 Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Ribokinase-like|Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain|Tagatose/fructose phosphokinase GO:0005975|GO:0016773 G3DSA:2.20.150.10|G3DSA:3.40.1190.20|PF00294|PIRSF000535|PS00583|PS00584|SSF53613|TIGR03168 NJ56_RS08995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR001347|IPR004800 CBS domain|Phosphosugar isomerase, KdsD/KpsF-type|Sugar isomerase (SIS) GO:0005975|GO:0016853|GO:0097367|GO:1901135 G3DSA:3.10.580.10|G3DSA:3.40.50.10490|PF00571|PF01380|PIRSF004692|SM00116|SSF53697|SSF54631|TIGR00393 NJ56_RS09000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001034|IPR011991|IPR014036|IPR018356 DeoR C-terminal sensor domain|DeoR-type HTH domain|Transcription regulator, HTH DeoR-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.1360|PF00455|PF08220|PS00894|SM00420|SM01134|SSF100950|SSF46785 NJ56_RS09005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009693 Glucitol operon activator PF06923|PIRSF011474 NJ56_RS09010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR016040|IPR020904 NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 NJ56_RS09015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 G3DSA:2.40.33.40|PD015842|PF03829|SSF141530 NJ56_RS09020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004702|IPR011618|IPR011638 Phosphotransferease, sorbitol phosphotransferase enzyme II|Sorbitol phosphotransferase enzyme II, C-terminal|Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 PF03612|PF07663|TIGR00825 NJ56_RS09025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 PF03608|PIRSF038321|TIGR00821 NJ56_RS09035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032497 Uncharacterised protein YmgD PF16456 NJ56_RS09040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|SSF56349 NJ56_RS09050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000189|IPR008258|IPR023346|IPR023664|IPR024570 Lysozyme-like domain|Murein transglycosylase-C|Murein transglycosylase-C, N-terminal|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1 GO:0000270|GO:0008933|GO:0009279|GO:0016020|GO:0016798|GO:0016998 G3DSA:1.10.530.10|MF_01616|PF01464|PF11873|PS00922|SSF53955 NJ56_RS09055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007457 Fe(II) trafficking protein YggX GO:0005506 G3DSA:1.10.3880.10|MF_00686|PD029191|PF04362|PIRSF029827|SSF111148 NJ56_RS09060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000445|IPR003265|IPR003651|IPR004035|IPR004036|IPR005760|IPR011257|IPR015797|IPR023170|IPR029119 A/G-specific adenine glycosylase MutY|DNA glycosylase|Endonuclease III, iron-sulphur binding site|Endonuclease III-like, conserved site-2|Endonuclease III-like, iron-sulphur cluster loop motif|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain|MutY, C-terminal|NUDIX hydrolase domain-like GO:0003677|GO:0003824|GO:0006281|GO:0006284|GO:0016787|GO:0019104|GO:0051539 G3DSA:1.10.1670.10|G3DSA:1.10.340.30|G3DSA:3.90.79.10|PF00633|PF00730|PF10576|PF14815|PS00764|PS01155|SM00478|SM00525|SSF48150|SSF55811|TIGR01084 NJ56_RS09065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003358|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 G3DSA:3.40.50.150|MF_01057|PF02390|SSF53335|TIGR00091 NJ56_RS09070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007416 Protein of unknown function DUF469 PF04320 NJ56_RS09075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012338|IPR015868 Beta-lactamase/transpeptidase-like|Glutaminase GO:0004359|GO:0006541 G3DSA:3.40.710.10|MF_00313|PF04960|SSF56601|TIGR03814 NJ56_RS09080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021307 Protein of unknown function DUF2884 PF11101 NJ56_RS09085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004559|IPR006638|IPR007197|IPR013785 Aldolase-type TIM barrel|Coproporphyrinogen III oxidase, oxygen-independent related|Elongator protein 3/MiaB/NifB|Radical SAM GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114 G3DSA:3.20.20.70|PF04055|SM00729|SSF102114|TIGR00539 NJ56_RS09090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002637|IPR020922|IPR029001 Ham1-like protein|Inosine triphosphate pyrophosphatase-like|dITP/XTP pyrophosphatase GO:0009143|GO:0017111|GO:0047429 G3DSA:3.90.950.10|MF_01405|PF01725|SSF52972|TIGR00042 NJ56_RS09095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003746|IPR005228 Conserved hypothetical protein CHP00251|Protein of unknown function DUF167 G3DSA:3.30.1200.10|MF_00634|PF02594|SM01152|SSF69786|TIGR00251 NJ56_RS09100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003425 CCB3/YggT GO:0016020 PF02325 NJ56_RS09105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000304|IPR008927|IPR016040|IPR028939|IPR029036 6-phosphogluconate dehydrogenase C-terminal domain-like|NAD(P)-binding domain|Pyrroline-5-carboxylate reductase|Pyrroline-5-carboxylate reductase, catalytic, N-terminal|Pyrroline-5-carboxylate reductase, dimerisation domain GO:0004735|GO:0006561|GO:0055114 G3DSA:1.10.3730.10|G3DSA:3.40.50.720|MF_01925|PF03807|PF14748|PIRSF000193|PS00521|SSF48179|SSF51735|TIGR00112 NJ56_RS09110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001608|IPR011078|IPR029066 Alanine racemase, N-terminal|PLP-binding barrel|Pyridoxal phosphate homeostasis protein G3DSA:3.20.20.10|PF01168|PIRSF004848|PS01211|SSF51419|TIGR00044 NJ56_RS09115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001482|IPR006321|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Pilus retraction protein PilT|Type II secretion system protein E GO:0005524|GO:0006810 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|SSF52540|TIGR01420 NJ56_RS09120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007466|IPR017754 Agmatine deiminase|Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446|GO:0047632 G3DSA:3.75.10.10|MF_01841|PF04371|SSF55909|TIGR03380 NJ56_RS09125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003010|IPR017755 Carbon-nitrogen hydrolase|N-carbamoylputrescine amidase GO:0006596|GO:0006807|GO:0016810|GO:0050126 G3DSA:3.60.110.10|PF00795|SSF56317|TIGR03381 NJ56_RS09130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005227|IPR006641|IPR012337 Putative pre-16S rRNA nuclease|Ribonuclease H-like domain|YqgF/RNase H-like domain GO:0003676|GO:0006139|GO:0006364 G3DSA:3.30.420.140|MF_00651|PF03652|SM00732|SSF53098|TIGR00250 NJ56_RS09135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003774 Protein of unknown function UPF0301 G3DSA:3.40.1740.10|MF_00758|PF02622|SSF143456 NJ56_RS09140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004215|IPR004218|IPR006284|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|Glutathione synthetase, prokaryotic|Pre-ATP-grasp domain|Prokaryotic glutathione synthetase, ATP-binding|Prokaryotic glutathione synthetase, N-terminal GO:0003824|GO:0004363|GO:0005524|GO:0005829|GO:0006750 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00162|PF02951|PF02955|SSF52440|SSF56059|TIGR01380 NJ56_RS09145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006700|IPR015947|IPR029026|IPR029028 Alpha/beta knot methyltransferases|PUA-like domain|Ribosomal RNA small subunit methyltransferase E|tRNA (guanine-N1-)-methyltransferase, N-terminal GO:0006364|GO:0008168 G3DSA:2.40.240.20|G3DSA:3.40.1280.10|PF04452|PIRSF015601|SSF75217|SSF88697|TIGR00046 NJ56_RS09150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007346 Endonuclease I GO:0004518 PF04231|SSF54060 NJ56_RS09155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006640|IPR023483|IPR035240 SprT-like|SprT-like, zinc ribbon domain|Uncharacterised protein family SprT G3DSA:2.10.110.10|MF_00746|PF10263|PF17283|SM00731 NJ56_RS09160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001845|IPR011991 HTH ArsR-type DNA-binding domain|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01022|PR00778|SM00418|SSF46785 NJ56_RS09165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007272 Sulphur transport domain PF04143 NJ56_RS09175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002133|IPR022628|IPR022629|IPR022630|IPR022631|IPR022636 S-adenosylmethionine synthetase|S-adenosylmethionine synthetase superfamily|S-adenosylmethionine synthetase, C-terminal|S-adenosylmethionine synthetase, N-terminal|S-adenosylmethionine synthetase, central domain|S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0005524|GO:0006556 G3DSA:3.30.300.10|MF_00086|PF00438|PF02772|PF02773|PIRSF000497|PS00376|PS00377|SSF55973|TIGR01034 NJ56_RS09180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000183|IPR002985|IPR009006|IPR022644|IPR022653|IPR022657|IPR029066 Alanine racemase/group IV decarboxylase, C-terminal|Arginine decarboxylase|Orn/DAP/Arg decarboxylase 2, N-terminal|Orn/DAP/Arg decarboxylase 2, conserved site|Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site|Ornithine/DAP/Arg decarboxylase|PLP-binding barrel GO:0003824|GO:0006527|GO:0008295|GO:0008792 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_01417|PF02784|PIRSF001336|PR01179|PR01180|PS00878|PS00879|SSF50621|SSF51419|TIGR01273 NJ56_RS09185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|SSF50022 NJ56_RS09190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005474|IPR005475|IPR005478|IPR009014|IPR020826|IPR029061|IPR033248 Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase binding site|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase, bacterial-like|Transketolase-like, pyrimidine-binding domain GO:0003824|GO:0004802|GO:0008152 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PF02779|PF02780|PS00801|PS00802|SM00861|SSF52518|SSF52922|TIGR00232 NJ56_RS09195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006422|IPR016040|IPR020828|IPR020829|IPR020830|IPR020831 D-erythrose-4-phosphate dehydrogenase|Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain|Glyceraldehyde 3-phosphate dehydrogenase, active site|Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain|Glyceraldehyde/Erythrose phosphate dehydrogenase family|NAD(P)-binding domain GO:0005737|GO:0016620|GO:0042823|GO:0048001|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_01640|PF00044|PF02800|PIRSF000149|PR00078|PS00071|SM00846|SSF51735|SSF55347|TIGR01532 NJ56_RS09200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001576|IPR015824|IPR015911 Phosphoglycerate kinase|Phosphoglycerate kinase, N-terminal|Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 G3DSA:3.40.50.1260|MF_00145|PF00162|PIRSF000724|PR00477|PS00111|SSF53748 NJ56_RS09205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000771|IPR006411|IPR013785 Aldolase-type TIM barrel|Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype|Fructose-bisphosphate aldolase, class-II GO:0003824|GO:0004332|GO:0005975|GO:0006096|GO:0008270|GO:0016832 G3DSA:3.20.20.70|PF01116|PIRSF001359|PS00602|PS00806|SSF51569|TIGR00167|TIGR01520 NJ56_RS09210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006685|IPR006686|IPR007523|IPR008910|IPR010920|IPR011014|IPR011066 Conserved TM helix|LSM domain|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, conserved site|Mechanosensitive ion channel MscS, transmembrane-2|NDUFAF3/Mth938 domain-containing protein GO:0016020|GO:0055085 G3DSA:2.30.30.60|G3DSA:3.30.70.100|G3DSA:3.40.1230.10|PF00924|PF05552|PS01246|SSF50182|SSF82689|SSF82861 NJ56_RS09215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001123|IPR004777|IPR023445 Amino acid exporter protein, LeuE-type|Arginine exporter protein ArgO, enterobacteria|L-lysine exporter/arginine exporter GO:0006865|GO:0015181|GO:0015809|GO:0016020|GO:0016021 MF_01901|PF01810|TIGR00948 NJ56_RS09220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007497 Protein of unknown function DUF541 G3DSA:3.30.1890.10|PF04402 NJ56_RS09225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991|IPR017685|IPR023490 HTH-type transcriptional regulator ArgP|HTH-type transcriptional regulator ArgP, Gammaproteobacteria|LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|MF_00513|PF00126|PF03466|PR00039|SSF46785|SSF53850|TIGR03298 NJ56_RS09230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004788|IPR020672 Ribose 5-phosphate isomerase, type A|Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 G3DSA:3.30.70.260|G3DSA:3.40.50.1360|MF_00170|PF06026|SSF100950|SSF75445|TIGR00021 NJ56_RS09235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006139|IPR006140|IPR016040|IPR029752|IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.30.70.260|G3DSA:3.40.50.720|PF00389|PF02826|PS00065|PS00670|PS00671|SSF51735|SSF52283|SSF55021 NJ56_RS09240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002698 5-formyltetrahydrofolate cyclo-ligase G3DSA:3.40.50.10420|PF01812|PIRSF006806|SSF100950|TIGR02727 NJ56_RS09250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007838|IPR023771 Cell division protein ZapA, eubacteria|Cell division protein ZapA-like MF_02012|PF05164|SSF102829 NJ56_RS09255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011978 Uncharacterised protein family UPF0149 MF_00346|PF03695|SSF101327|TIGR02292 NJ56_RS09260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000994|IPR001131|IPR001714|IPR007865|IPR028980|IPR029149 Aminopeptidase P, N-terminal|Creatinase/Aminopeptidase P, N-terminal|Creatinase/Aminopeptidase P/Spt16, N-terminal|Peptidase M24|Peptidase M24, methionine aminopeptidase|Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site GO:0004177|GO:0030145 G3DSA:3.40.350.10|G3DSA:3.90.230.10|PF00557|PF05195|PR00599|PS00491|SM01011|SSF53092|SSF55920 NJ56_RS09265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002938|IPR010971|IPR011295|IPR018168|IPR023753 2-polyprenyl-6-methoxyphenol 4-hydroxylase|FAD-binding domain|FAD/NAD(P)-binding domain|Ubiquinone biosynthesis hydroxylase UbiH/COQ6|Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0006744|GO:0008681|GO:0016491|GO:0016709|GO:0050660|GO:0055114|GO:0071949 G3DSA:3.50.50.60|PF01494|PR00420|PS01304|SSF51905|TIGR01984|TIGR01988 NJ56_RS09270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002938|IPR010971|IPR018168|IPR023753 FAD-binding domain|FAD/NAD(P)-binding domain|Ubiquinone biosynthesis hydroxylase UbiH/COQ6|Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0006744|GO:0016491|GO:0016709|GO:0050660|GO:0055114|GO:0071949 G3DSA:3.50.50.60|PF01494|PR00420|PS01304|SSF51905|TIGR01988 NJ56_RS09275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006222|IPR006223|IPR013977|IPR022903|IPR029043 Glycine cleavage T-protein, C-terminal barrel domain|Glycine cleavage T-protein-like, N-terminal|Glycine cleavage T-protein/YgfZ, C-terminal domain|Glycine cleavage system T protein|Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 G3DSA:2.40.30.110|G3DSA:3.30.1360.120|G3DSA:4.10.1250.10|MF_00259|PF01571|PF08669|PIRSF006487|SSF101790|SSF103025|TIGR00528 NJ56_RS09280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002930|IPR003016|IPR011053|IPR017453|IPR033753 2-oxo acid dehydrogenase, lipoyl-binding site|Glycine cleavage system H-protein|Glycine cleavage system H-protein, subgroup|Glycine cleavage system H-protein/Simiate|Single hybrid motif GO:0005960|GO:0019464 G3DSA:2.40.50.100|MF_00272|PF01597|PS00189|SSF51230|TIGR00527 NJ56_RS09285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003437|IPR015421|IPR015422|IPR015424|IPR020581 Glycine cleavage system P protein|Glycine dehydrogenase (decarboxylating)|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0004375|GO:0006544|GO:0006546|GO:0055114 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00711|PF02347|SSF53383|TIGR00461 NJ56_RS09295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004254|IPR005744 AdipoR/Haemolysin-III-related|Hly-III GO:0016021|GO:0019835 PF03006|TIGR01065 NJ56_RS09300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006222|IPR017703|IPR023758|IPR029043 Glycine cleavage T-protein-like, N-terminal|Glycine cleavage T-protein/YgfZ, C-terminal domain|YgfZ/GcvT conserved site|tRNA-modifying protein YgfZ GO:0005542|GO:0009451 G3DSA:3.30.70.1400|MF_01175|PF01571|PIRSF006487|SSF101790|SSF103025|TIGR03317 NJ56_RS09305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005631 Flavinator of succinate dehydrogenase G3DSA:1.10.150.250|PF03937|SSF109910 NJ56_RS09310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009883 Inner membrane protein YgfX PD083358|PF07254|PIRSF020653 NJ56_RS09315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001226|IPR008254|IPR010086|IPR029039 Flavodoxin, conserved site|Flavodoxin, long chain|Flavodoxin/nitric oxide synthase|Flavoprotein-like domain GO:0009055|GO:0010181 G3DSA:3.40.50.360|PF00258|PIRSF038996|PS00201|SSF52218|TIGR01752 NJ56_RS09320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR011932|IPR013762|IPR023009|IPR023109 DNA breaking-rejoining enzyme, catalytic core|Integrase, Lambda-type, N-terminal|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD|Tyrosine recombinase XerD GO:0003677|GO:0006310|GO:0009009|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01807|MF_01808|PF00589|PF02899|SSF47823|SSF56349|TIGR02225 NJ56_RS09325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012336|IPR017937|IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin, conserved site|Thioredoxin-like fold GO:0045454 G3DSA:3.10.450.70|G3DSA:3.40.30.10|PF10411|PF13098|PS00194|SSF52833|SSF54423 NJ56_RS09330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001667|IPR003156|IPR004610 Bacterial RecJ exonuclease|DDH domain|DHHA1 domain GO:0003676|GO:0006281|GO:0006310|GO:0008409 G3DSA:3.90.1640.10|PF01368|PF02272|SSF64182|TIGR00644 NJ56_RS09340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002313|IPR004364|IPR004365|IPR012340|IPR018149|IPR034762 Aminoacyl-tRNA synthetase, class II (D/K/N)|Bacterial/eukaryotic lysine-tRNA ligase, class II|Lysine-tRNA ligase, class II|Lysyl-tRNA synthetase, class II, C-terminal|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0004824|GO:0005524|GO:0005737|GO:0006418|GO:0006430 G3DSA:2.40.50.140|G3DSA:3.30.930.10|MF_00252|PF00152|PF01336|PIRSF039101|PR00982|SSF50249|SSF55681|TIGR00499 NJ56_RS09350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003453|IPR030802 ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE GO:0006810|GO:0043190 PF02405|TIGR00056 NJ56_RS09355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 NJ56_RS09360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003399 Mce/MlaD G3DSA:1.20.1170.10|PF02470 NJ56_RS09365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005586 ABC-type transport auxiliary lipoprotein component G3DSA:3.40.50.10610|PF03886|SSF159594 NJ56_RS09370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011991|IPR016032 Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|SSF46894 NJ56_RS09380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001775|IPR004845|IPR004846|IPR005644|IPR013356 GspD/PilQ family|NolW-like|Type II secretion system GspD|Type II secretion system GspD, conserved site|Type II/III secretion system GO:0008565|GO:0009306|GO:0015627|GO:0015628|GO:0019867 PF00263|PF03958|PR00811|PS00875|TIGR02517 NJ56_RS09385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001482|IPR003593|IPR013369|IPR027417 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system GspE|Type II secretion system protein E GO:0005524|GO:0006810|GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|SM00382|SSF160246|SSF52540|TIGR02533 NJ56_RS09390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001992|IPR003004|IPR018076 GspF/PilC family|Type II secretion system F domain|Type II secretion system conserved site GO:0009306|GO:0016020 PF00482|PR00812|PS00874 NJ56_RS09395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000983|IPR010054|IPR012902|IPR013545 Bacterial general secretion pathway protein G-type pilin|General secretion pathway protein G|Prokaryotic N-terminal methylation site|Type II secretion system protein G GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF07963|PF08334|PR00813|SSF54523|TIGR01710|TIGR02532 NJ56_RS09405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010052|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.1300.30|PF07963|SSF54523|TIGR01707|TIGR02532 NJ56_RS09410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010055|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 G3DSA:2.10.70.20|G3DSA:3.10.610.10|G3DSA:3.30.700.10|PF07963|PF11612|PS00409|SSF54523|TIGR01711|TIGR02532 NJ56_RS09415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 G3DSA:1.10.40.60|PF03934|SSF158544 NJ56_RS09420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024230 GspL, cytoplasmic actin-ATPase-like domain PF05134|SSF53067 NJ56_RS09425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023229 Type II secretion system protein M, periplasmic domain G3DSA:3.30.1360.100|SSF103054 NJ56_RS09430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SM00862|SSF46894 NJ56_RS09440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001853|IPR012336 DSBA-like thioredoxin domain|Thioredoxin-like fold GO:0015035 G3DSA:3.40.30.10|PF01323|SSF52833 NJ56_RS09445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001279 Metallo-beta-lactamase G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 NJ56_RS09450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS09455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS09460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000183|IPR002986|IPR009006|IPR022643|IPR022644|IPR022653|IPR022657|IPR029066 Alanine racemase/group IV decarboxylase, C-terminal|Diaminopimelate decarboxylase, LysA|Orn/DAP/Arg decarboxylase 2, C-terminal|Orn/DAP/Arg decarboxylase 2, N-terminal|Orn/DAP/Arg decarboxylase 2, conserved site|Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site|Ornithine/DAP/Arg decarboxylase|PLP-binding barrel GO:0003824|GO:0008836|GO:0009089 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_02120|PF00278|PF02784|PR01179|PR01181|PS00878|PS00879|SSF50621|SSF51419|TIGR01048 NJ56_RS09465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PR00036|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS09475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR002123|IPR020845|IPR023775|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Bifunctional protein Aas|Phospholipid/glycerol acyltransferase GO:0003824|GO:0006631|GO:0008152|GO:0008654|GO:0008779|GO:0008922|GO:0016746 G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.1130.10|G3DSA:3.40.50.980|MF_01162|PF00501|PF01553|PF13193|PS00455|SM00563|SSF56801|SSF69593 NJ56_RS09480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846|IPR023727 Lysophospholipid transporter LplT|Major facilitator superfamily|Major facilitator superfamily domain GO:0005886|GO:0016021|GO:0051977|GO:0051978|GO:0055085 G3DSA:1.20.1250.20|MF_01585|PF07690|SSF103473 NJ56_RS09485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023210 NADP-dependent oxidoreductase domain G3DSA:3.20.20.100|PF00248|SSF51430 NJ56_RS09490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005496 Integral membrane protein TerC GO:0016021 PF03741 NJ56_RS09495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004230|IPR011335|IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II|DNA mismatch repair protein MutH|Restriction endonuclease type II-like GO:0003677|GO:0004519|GO:0006304 G3DSA:3.40.600.10|MF_00759|PF02976|SM00927|SSF52980|TIGR02248 NJ56_RS09505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR015797|IPR020084|IPR020476|IPR022927 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site|RNA pyrophosphohydrolase RppH GO:0016787 G3DSA:3.90.79.10|MF_00298|PF00293|PR00502|PS00893|SSF55811 NJ56_RS09510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000121|IPR003018|IPR006318|IPR008279|IPR008731|IPR015813|IPR018274|IPR023151|IPR029016 GAF domain|GAF domain-like|PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphotransferase system, enzyme I N-terminal|Phosphotransferase system, enzyme I-like|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824|GO:0005515|GO:0009401|GO:0016310|GO:0016772 G3DSA:1.10.274.10|G3DSA:3.20.20.60|G3DSA:3.30.450.40|G3DSA:3.50.30.10|PF00391|PF01590|PF02896|PF05524|PR01736|PS00370|PS00742|SM00065|SSF47831|SSF51621|SSF52009|SSF55781|TIGR01417 NJ56_RS09515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 MF_01147|PF01790|PS01311|TIGR00544 NJ56_RS09520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000398|IPR020940|IPR023451 Thymidylate synthase|Thymidylate synthase, active site|Thymidylate synthase/dCMP hydroxymethylase domain GO:0004799|GO:0006231 G3DSA:3.30.572.10|MF_00008|PF00303|PR00108|PS00091|SSF55831|TIGR03284 NJ56_RS09530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012902 Prokaryotic N-terminal methylation site G3DSA:3.30.700.10|PF07963|SSF54523|TIGR02532 NJ56_RS09535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016419 Prepilin peptidase-dependent protein B, predicted PIRSF004525 NJ56_RS09540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019652 Protein of unknown function DUF2509 PF10713 NJ56_RS09545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012902|IPR022204 Prepilin peptidase dependent protein C|Prokaryotic N-terminal methylation site PF07963|PF12528|PS00409|TIGR02532 NJ56_RS09550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006697|IPR011335|IPR027417 P-loop containing nucleoside triphosphate hydrolase|RecBCD enzyme subunit RecC|Restriction endonuclease type II-like GO:0008854|GO:0009338 G3DSA:1.10.10.160|G3DSA:1.10.486.10|G3DSA:3.40.50.300|MF_01486|PF04257|PIRSF000980|SSF52540|SSF52980|TIGR01450 NJ56_RS09555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001431|IPR007863|IPR011249|IPR011765|IPR032632 Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16, C-terminal|Peptidase M16, N-terminal|Peptidase M16, middle/third domain|Peptidase M16, zinc-binding site GO:0003824|GO:0004222|GO:0006508|GO:0046872 G3DSA:3.30.830.10|PF00675|PF05193|PF16187|PS00143|SSF63411 NJ56_RS09560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004586|IPR011335|IPR011604|IPR014017|IPR027417|IPR034739 Exonuclease, phage-type/RecB, C-terminal|P-loop containing nucleoside triphosphate hydrolase|RecBCD enzyme subunit RecB|Restriction endonuclease type II-like|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0003677|GO:0004518|GO:0005524|GO:0006281|GO:0008854|GO:0016787 G3DSA:1.10.3170.10|G3DSA:3.40.50.300|G3DSA:3.90.320.10|MF_01485|PF00580|PF13361|SSF52540|SSF52980|TIGR00609 NJ56_RS09565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006344|IPR027417|IPR027785 P-loop containing nucleoside triphosphate hydrolase|RecBCD enzyme subunit RecD|UvrD-like helicase C-terminal domain GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 G3DSA:3.40.50.300|MF_01487|PF13538|PF13604|SSF52540|TIGR01447 NJ56_RS09570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR001048|IPR010167|IPR016181 Acyl-CoA N-acyltransferase|Amino-acid N-acetyltransferase|Aspartate/glutamate/uridylate kinase|GNAT domain GO:0004042|GO:0005737|GO:0006526|GO:0008080 G3DSA:3.40.1160.10|G3DSA:3.40.630.30|MF_01105|PF00583|PF00696|PIRSF000423|SSF53633|SSF55729|TIGR01890 NJ56_RS09575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002508|IPR021731 AMIN domain|N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 G3DSA:3.40.630.40|PF01520|PF11741|SM00646|SSF53187 NJ56_RS09595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005300|IPR009009|IPR010611|IPR026044 3D domain|Lytic transglycosylase MltA, domain B|Membrane-bound lytic murein transglycosylase A|RlpA-like protein, double-psi beta-barrel domain GO:0004553|GO:0009254|GO:0019867 G3DSA:2.40.240.50|PF03562|PF06725|PIRSF019422|SM00925|SSF50685 NJ56_RS09600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000594 THIF-type NAD/FAD binding fold GO:0008641 G3DSA:3.40.50.720|PF00899|SSF69572 NJ56_RS09605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003808|IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE|Fe-S metabolism associated domain, SufE-like G3DSA:3.90.1010.10|PF02657|SSF82649|TIGR03391 NJ56_RS09610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR020578|IPR022471 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulphurase, catalytic subunit, CsdA|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0016226|GO:0031071 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PS00595|SSF53383|TIGR03392 NJ56_RS09615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010305|IPR010920 LSM domain|Protein of unknown function DUF903 G3DSA:2.30.30.100|PF06004|SSF50182 NJ56_RS09620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS09625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006696 Protein of unknown function DUF423 PF04241 NJ56_RS09630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002877|IPR011224|IPR029063 Ribosomal RNA large subunit methyltransferase M|Ribosomal RNA methyltransferase FtsJ domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168|GO:0032259 G3DSA:3.40.50.150|MF_01551|PF01728|PIRSF028774|SSF53335 NJ56_RS09635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002421|IPR008918|IPR020045|IPR020046|IPR022895|IPR029060 5'-3' exonuclease, C-terminal domain|5'-3' exonuclease, N-terminal|5'-3' exonuclease, alpha-helical arch, N-terminal|Flap endonuclease Xni|Helix-hairpin-helix motif, class 2|PIN domain-like GO:0003677|GO:0003824|GO:0048256 G3DSA:1.10.150.20|G3DSA:3.40.50.1010|MF_01192|PF01367|PF02739|SM00279|SM00475|SSF47807|SSF88723 NJ56_RS09640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021826|IPR027820|IPR031100 Domain of unknown function DUF3412|Domain of unknown function DUF4478|LOG family G3DSA:3.30.1850.10|G3DSA:3.40.50.450|PF03641|PF11892|PF14793|SSF102405 NJ56_RS09645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016428|IPR029139|IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF|NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal|NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0033739|GO:0046857|GO:0055114 G3DSA:3.30.1130.10|MF_00817|PF14489|PF14819|PIRSF004750|SSF55620|TIGR03138 NJ56_RS09650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009948 Syd GO:0009898 MF_01104|PF07348 NJ56_RS09655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007384|IPR023376 Protein of unknown function UCP006257|YqcC-like domain G3DSA:1.20.1440.40|PF04287|PIRSF006257|SSF158452 NJ56_RS09660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006145|IPR006224|IPR020103 Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|PF00849|PS01129|SSF55120 NJ56_RS09665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001094|IPR008254|IPR029039 Flavodoxin-like|Flavodoxin/nitric oxide synthase|Flavoprotein-like domain GO:0010181|GO:0055114 G3DSA:3.40.50.360|PF00258|PR00369|SSF52218 NJ56_RS09670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020911 Uncharacterised protein family UPF0325 MF_01519|PD080106|PF11944 NJ56_RS09675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001451|IPR005664|IPR011004|IPR018357|IPR023180 Hexapeptide repeat|Hexapeptide transferase, conserved site|Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family|Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1|Trimeric LpxA-like GO:0008666|GO:0009089|GO:0016740 G3DSA:1.10.166.10|G3DSA:2.160.10.10|MF_00811|PF00132|PF14602|PF14805|PS00101|SSF51161|TIGR00965 NJ56_RS09680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002912|IPR002934|IPR003607|IPR006674|IPR010043|IPR013546 ACT domain|Bifunctional uridylyltransferase/uridylyl-removing enzyme|HD domain|HD/PDEase domain|PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase|Polymerase, nucleotidyl transferase domain GO:0006807|GO:0008773|GO:0016779 G3DSA:1.10.3090.10|G3DSA:1.20.120.330|G3DSA:3.30.460.10|G3DSA:3.30.70.260|MF_00277|PF01842|PF01909|PF01966|PF08335|PIRSF006288|SM00471|SSF109604|SSF55021|SSF81301|SSF81593|TIGR01693 NJ56_RS09685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000994|IPR001714|IPR002467 Peptidase M24|Peptidase M24, methionine aminopeptidase|Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 G3DSA:3.90.230.10|MF_01974|PF00557|PR00599|PS00680|SSF55920|TIGR00500 NJ56_RS09690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001865|IPR005706|IPR018130|IPR023591 Ribosomal protein S2|Ribosomal protein S2, bacteria/mitochondria/plastid|Ribosomal protein S2, conserved site|Ribosomal protein S2, flavodoxin-like domain GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.40.50.10490|MF_00291_B|PF00318|PR00395|PS00962|PS00963|SSF52313|TIGR01011 NJ56_RS09695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001816|IPR009060|IPR014039|IPR018101 Translation elongation factor EFTs/EF1B|Translation elongation factor EFTs/EF1B, dimerisation|Translation elongation factor Ts, conserved site|UBA-like GO:0003746|GO:0005515|GO:0005622|GO:0006414 G3DSA:1.10.8.10|G3DSA:3.30.479.20|MF_00050|PF00889|PS01127|SSF46934|SSF54713|TIGR00116 NJ56_RS09700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001048|IPR011817|IPR015963 Aspartate/glutamate/uridylate kinase|Uridylate kinase|Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0009041|GO:0033862 G3DSA:3.40.1160.10|MF_01220_B|PF00696|PIRSF005650|SSF53633|TIGR02075 NJ56_RS09705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002661|IPR023584 Ribosome recycling factor|Ribosome recycling factor domain GO:0006412 G3DSA:1.10.132.20|MF_00040|PF01765|SSF55194|TIGR00496 NJ56_RS09710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003821|IPR013512|IPR013644|IPR016040|IPR026877 1-deoxy-D-xylulose 5-phosphate reductoisomerase|1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal|1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal|DXP reductoisomerase C-terminal domain|NAD(P)-binding domain GO:0005515|GO:0008299|GO:0030604|GO:0046872|GO:0055114|GO:0070402 G3DSA:1.10.1740.10|G3DSA:3.40.50.720|MF_00183|PF02670|PF08436|PF13288|PIRSF006205|SSF51735|SSF55347|SSF69055|TIGR00243 NJ56_RS09715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001441|IPR018520 Decaprenyl diphosphate synthase-like|Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 G3DSA:3.40.1180.10|MF_01139|PF01255|PS01066|SSF64005|TIGR00055 NJ56_RS09720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 PF01148|PS01315 NJ56_RS09725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001478|IPR004387|IPR008915 PDZ domain|Peptidase M50|Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0005515|GO:0006508|GO:0016021 G3DSA:2.30.42.10|PF00595|PF02163|SM00228|SSF50156|TIGR00054 NJ56_RS09730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000184|IPR010827|IPR023707 Bacterial surface antigen (D15)|Outer membrane protein assembly factor BamA|POTRA domain, BamA/TamA-like GO:0019867|GO:0071709 G3DSA:2.40.160.50|G3DSA:3.10.20.310|MF_01430|PF01103|PF07244|PIRSF006076|TIGR03303 NJ56_RS09735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005632|IPR024930 Chaperone protein Skp|Skp domain GO:0051082 G3DSA:3.30.910.20|PF03938|PIRSF002094|SM00935|SSF111384 NJ56_RS09740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001451|IPR007691|IPR011004|IPR018357|IPR020573 Hexapeptide repeat|Hexapeptide transferase, conserved site|Trimeric LpxA-like|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016410|GO:0016740|GO:0016747 G3DSA:2.160.10.10|MF_00523|PF00132|PF04613|PS00101|SSF51161|TIGR01853 NJ56_RS09745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010084|IPR013114|IPR029069 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ|Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ|HotDog domain GO:0005737|GO:0006633|GO:0016836 G3DSA:3.10.129.10|MF_00406|PF07977|SSF54637|TIGR01750 NJ56_RS09750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001451|IPR010137|IPR011004|IPR018357|IPR029098 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase|Hexapeptide repeat|Hexapeptide transferase, conserved site|Trimeric LpxA-like|Udp N-acetylglucosamine O-acyltransferase, C-terminal GO:0008610|GO:0008780|GO:0016740 G3DSA:1.20.1180.10|G3DSA:2.160.10.10|MF_00387|PF00132|PF13720|PIRSF000456|PS00101|SSF51161|TIGR01852 NJ56_RS09755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 G3DSA:3.40.50.2000|MF_00392|PF02684|SSF53756|TIGR00215 NJ56_RS09760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012337|IPR022898|IPR024567 Ribonuclease H-like domain|Ribonuclease HII|Ribonuclease HII/HIII domain GO:0003676|GO:0004523 G3DSA:3.30.420.10|MF_00052_B|PF01351|SSF53098 NJ56_RS09765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003141|IPR004013|IPR004365|IPR004805|IPR011708|IPR016195|IPR029460 Bacterial DNA polymerase III, alpha subunit|DNA polymerase III, alpha subunit|DNA polymerase, helix-hairpin-helix motif|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type|PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like GO:0003676|GO:0003824|GO:0006260|GO:0008408 G3DSA:1.10.150.280|G3DSA:2.40.50.140|G3DSA:3.20.20.140|PF01336|PF02811|PF07733|PF14579|SM00481|SSF89550|TIGR00594 NJ56_RS09770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001095|IPR029045 Acetyl-CoA carboxylase, alpha subunit|ClpP/crotonase-like domain GO:0003989|GO:0006633|GO:0009317 G3DSA:3.90.226.10|MF_00823|PF03255|PR01069|SSF52096|TIGR00513 NJ56_RS09780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 G3DSA:3.90.210.10|PF02917|SSF56399 NJ56_RS09790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 NJ56_RS09795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011063|IPR012094|IPR012795|IPR012796|IPR014729|IPR015262|IPR020825 Lysidine-tRNA(Ile) synthetase, C-terminal|Phenylalanyl-tRNA synthetase, B3/B4|Rossmann-like alpha/beta/alpha sandwich fold|tRNA(Ile)-lysidine synthase|tRNA(Ile)-lysidine synthase , substrate-binding domain|tRNA(Ile)-lysidine synthase, N-terminal|tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 G3DSA:3.40.50.620|MF_01161|PF01171|PF09179|PF11734|SM00977|SSF52402|SSF56037|SSF82829|TIGR02432|TIGR02433 NJ56_RS09800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF00034|SSF46626 NJ56_RS09805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009778|IPR023534 Modulator of Rho-dependent transcription termination|Rof/RNase P-like G3DSA:2.30.30.400|PF07073|SSF101744 NJ56_RS09810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009624 Uncharacterised protein family UPF0253 MF_01064|PD054643|PF06786 NJ56_RS09815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009822|IPR011335 Restriction endonuclease type II-like|YaeQ G3DSA:3.10.640.10|PF07152|PIRSF011484|SM01322|SSF52980 NJ56_RS09820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 G3DSA:3.30.160.20|PF00472|PS00745|SSF75620 NJ56_RS09825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007298|IPR033450 Copper resistance lipoprotein NlpE|NlpE, C-terminal OB domain PF04170|PF17185 NJ56_RS09830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002314|IPR002316|IPR004154|IPR004500|IPR007214|IPR023717 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Proline-tRNA ligase, class IIa|Prolyl-tRNA synthetase, class IIa, bacterial-type|Prolyl-tRNA synthetase, class IIa, type 1|YbaK/aminoacyl-tRNA synthetase-associated domain GO:0000166|GO:0002161|GO:0004812|GO:0004827|GO:0005524|GO:0005737|GO:0006418|GO:0006433 G3DSA:3.30.930.10|G3DSA:3.40.50.800|MF_01569|PF00587|PF03129|PF04073|PIRSF001535|PR01046|SSF52954|SSF55681|SSF55826|TIGR00409 NJ56_RS09835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023368|IPR023370 TsaA-like domain|Uncharacterised protein family UPF0066, conserved site G3DSA:2.40.30.70|G3DSA:3.30.2310.10|PF01980|PS01318|SSF118196|TIGR00104 NJ56_RS09840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 MF_00976|PF16358 NJ56_RS09845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004872 Lipoprotein NlpA family G3DSA:3.40.190.10|PF03180|PIRSF002854|SSF53850|TIGR00363 NJ56_RS09850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS09855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR012692|IPR017871|IPR018449|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria|ABC transporter-like|NIL domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0009276|GO:0016887|GO:0048473|GO:0048474 G3DSA:3.30.70.260|G3DSA:3.40.50.300|PF00005|PF09383|PS00211|SM00382|SM00930|SSF52540|SSF55021|TIGR02314 NJ56_RS09860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004446|IPR006543|IPR006549|IPR023214 D,D-heptose 1,7-bisphosphate phosphatase|HAD-like domain|HAD-superfamily hydrolase,subfamily IIIA|Histidinol-phosphate phosphatase GO:0005975|GO:0016791 G3DSA:3.40.50.1000|PF13242|PIRSF004682|SSF56784|TIGR00213|TIGR01656|TIGR01662 NJ56_RS09885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017028|IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein|Uncharacterised conserved protein UCP034456 PF10043|PIRSF034456 NJ56_RS09890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001736|IPR025202 Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824 G3DSA:3.30.870.10|PF13091|PIRSF000850|SM00155|SSF56024 NJ56_RS09895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR003781|IPR013815|IPR016040|IPR016102|IPR016181|IPR032875 ATP-grasp fold, subdomain 1|Acyl-CoA N-acyltransferase|CoA-binding|GNAT domain|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0003824|GO:0005524|GO:0008080|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|G3DSA:3.40.630.30|PF00583|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF55729|SSF56059 NJ56_RS09900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005636 DTW PF03942|SM01144 NJ56_RS09905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005746|IPR012336|IPR013766|IPR017937 Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like fold GO:0006662|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|SSF52833|TIGR01068 NJ56_RS09910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001537|IPR013123|IPR016479|IPR029026|IPR029028|IPR029064 50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|RNA 2-O ribose methyltransferase, substrate binding|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type|tRNA/rRNA methyltransferase, YfiF, predicted GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.30.1330.30|G3DSA:3.40.1280.10|PF00588|PF08032|PIRSF006280|SM00967|SSF55315|SSF75217 NJ56_RS09915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004638|IPR011701|IPR020846 Drug resistance transporter EmrB/QacA subfamily|Major facilitator superfamily|Major facilitator superfamily domain GO:0006810|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PR01036|SSF103473|TIGR00711 NJ56_RS09920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005694|IPR006143|IPR032317 Efflux pump membrane protein Emr|RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0006855|GO:0015238|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.50.100|PF00529|PF16576|SSF111369|TIGR00998 NJ56_RS09930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000835|IPR011991|IPR023187 MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|PS01117|SM00347|SSF46785 NJ56_RS09935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS09945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 G3DSA:3.40.190.10|PF04069|SSF53850 NJ56_RS09950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS09955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR003439|IPR003593|IPR005892|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|CBS domain|Glycine betaine transport ATP-binding subunit|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016887|GO:0031460 G3DSA:3.10.580.10|G3DSA:3.40.50.300|PF00005|PF00571|PS00211|SM00382|SSF52540|SSF54631|TIGR01186 NJ56_RS09960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000358|IPR009078|IPR026494|IPR030475 Ferritin-like superfamily|Ribonucleoside reductase subunit beta, NrdF|Ribonucleotide reductase small subunit family|Ribonucleotide reductase small subunit, acitve site GO:0005971|GO:0009263|GO:0055114 G3DSA:1.10.620.20|PF00268|PIRSF000355|PS00368|SSF47240|TIGR04171 NJ56_RS09965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000788|IPR008926|IPR013346|IPR013509|IPR013554|IPR026459 Ribonucleotide reductase N-terminal|Ribonucleotide reductase R1 subunit, N-terminal|Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase large subunit, N-terminal|Ribonucleotide reductase, class 1b, subunit NrdE|Ribonucleotide reductase, class I , alpha subunit GO:0004748|GO:0005524|GO:0006260|GO:0055114 G3DSA:3.20.70.20|PF00317|PF02867|PF08343|PR01183|PS00089|SSF48168|SSF51998|TIGR02506|TIGR04170 NJ56_RS09970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004465|IPR020852|IPR029039 Flavoprotein-like domain|Ribonucleotide reductase Class Ib, NrdI|Ribonucleotide reductase, class Ib, NrdI, bacterial G3DSA:3.40.50.360|MF_00128|PF07972|PIRSF005087|SSF52218|TIGR00333 NJ56_RS09975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002109|IPR011909|IPR012336 Glutaredoxin|Glutaredoxin-like protein NrdH|Thioredoxin-like fold GO:0009055|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00462|SSF52833|TIGR02194 NJ56_RS09980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023497 Acid shock protein MF_00546 NJ56_RS09985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018994 Protein of unknown function DUF2002 PF09400|SSF159894 NJ56_RS09990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009587 Protein of unknown function DUF1198 PD093913|PF06711 NJ56_RS09995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006983 MbeD/MobD-like PF04899 NJ56_RS10000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 NJ56_RS10005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006231|IPR023753 FAD/NAD(P)-binding domain|Malate:quinone-oxidoreductase GO:0006099|GO:0008924|GO:0016491|GO:0055114 G3DSA:3.50.50.60|MF_00212|PF06039|SSF51905|TIGR01320 NJ56_RS10010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000262|IPR008259|IPR012133|IPR013785|IPR020920 Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase|L-lactate dehydrogenase, bacterial GO:0003824|GO:0004457|GO:0006089|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|MF_01559|PF01070|PIRSF000138|PS00557|SSF51395 NJ56_RS10015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PF02652|TIGR00795 NJ56_RS10020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS10025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022742|IPR029058 Alpha/Beta hydrolase fold|Serine aminopeptidase, S33 G3DSA:3.40.50.1820|PF12146|SSF53474 NJ56_RS10030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025997|IPR028082 Periplasmic binding protein|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13407|SSF53822 NJ56_RS10035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS10040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001851|IPR035568 ABC transporter, FecCD/TroCD-like|ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 G3DSA:1.10.3470.10|PF02653 NJ56_RS10045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001851|IPR035568 ABC transporter, FecCD/TroCD-like|ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 G3DSA:1.10.3470.10|PF02653 NJ56_RS10050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000577|IPR006003|IPR018484|IPR018485 Carbohydrate kinase, FGGY|Carbohydrate kinase, FGGY, C-terminal|Carbohydrate kinase, FGGY, N-terminal|FGGY carbohydrate kinase, pentulose kinase GO:0005975|GO:0016773 G3DSA:3.30.420.40|PF00370|PF02782|PIRSF000538|SSF53067|TIGR01315 NJ56_RS10055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 G3DSA:3.40.50.10490|PF01380|SSF53697 NJ56_RS10080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022385 Rhs repeat-associated core GO:0097264 TIGR03696 NJ56_RS10085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003284|IPR022044|IPR022045 Insecticide toxin TcdB middle/C-terminal|Insecticide toxin TcdB middle/N-terminal|Salmonella virulence plasmid 65kDa B protein GO:0005737 G3DSA:2.130.10.130|PF03534|PF12255|PF12256|PR01341|SSF69318 NJ56_RS10095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018003 Insecticidal toxin complex/plasmid virulence protein PF03538 NJ56_RS10100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR015059|IPR029283 Calcium-dependent cell adhesion molecule 1, membrane-binding domain|Calcium-dependent cell adhesion molecule, N-terminal GO:0016020|GO:0016337 G3DSA:2.60.40.1720|PF08964|PF14564 NJ56_RS10105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001584|IPR002514|IPR009057|IPR012337 Homeobox domain-like|Integrase, catalytic core|Ribonuclease H-like domain|Transposase IS3/IS911family GO:0003676|GO:0003677|GO:0004803|GO:0006313|GO:0015074 G3DSA:1.10.10.60|G3DSA:3.30.420.10|PF00665|PF01527|SSF46689|SSF53098 NJ56_RS10125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS10140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090 NJ56_RS10145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS10150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR018030|IPR025885|IPR025949 Fimbrial membrane usher, conserved site|Outer membrane usher protein|PapC, N-terminal domain|PapC-like, C-terminal domain GO:0005215|GO:0005515|GO:0006810|GO:0016020 PF00577|PF13953|PF13954|PS01151|SSF141729 NJ56_RS10155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001829|IPR008962|IPR013783|IPR016147|IPR016148 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, C-terminal|Pili assembly chaperone, N-terminal|Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077|GO:0071555 G3DSA:2.60.40.10|PF00345|PF02753|PR00969|SSF49354|SSF49584 NJ56_RS10185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011989 Armadillo-like helical G3DSA:1.25.10.10|PF05729 NJ56_RS10205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002694|IPR004968|IPR006171|IPR011991|IPR013237|IPR014818|IPR027417 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal|Bacteriophage/plasmid primase, P4, C-terminal|DNA primase/nucleoside triphosphatase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|TOPRIM domain|Winged helix-turn-helix DNA-binding domain|Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0004386|GO:0006260|GO:0008270 G3DSA:1.10.10.10|G3DSA:3.40.1360.10|G3DSA:3.40.50.300|G3DSA:3.90.580.10|PF03288|PF08273|PF08706|PF13362|SM00778|SM00885|SSF46785|SSF52540|SSF57783 NJ56_RS10210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR035317 Protein of unknown function DUF5375 PD070475|PF17345 NJ56_RS10220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018880 Bacteriophage P4, Ash protein PF10554 NJ56_RS10230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010260|IPR011991 DNA-binding transcriptional activator AlpA|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|PF05930 NJ56_RS10235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic PD037484 NJ56_RS10240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007684 Zinc finger, Ogr/Delta-type PF04606 NJ56_RS10245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13175|SSF52540 NJ56_RS10250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762|IPR023109|IPR025166 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13356|SSF56349 NJ56_RS10260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000037|IPR020081|IPR023620 Small protein B|SsrA-binding protein|SsrA-binding protein, conserved site GO:0003723 G3DSA:2.40.280.10|MF_00023|PD004488|PF01668|PS01317|SSF74982|TIGR00086 NJ56_RS10265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005031|IPR023393 Coenzyme Q-binding protein COQ10, START domain|START-like domain G3DSA:3.30.530.20|PF03364|SSF55961 NJ56_RS10270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005346|IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|RnfH protein G3DSA:3.10.20.280|MF_00460|PF03658|SSF54285 NJ56_RS10275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007450|IPR026592 Lipoprotein SmpA/OmlA|Outer membrane protein assembly factor BamE GO:0019867 G3DSA:3.30.1450.10|MF_00925|PF04355 NJ56_RS10280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003395|IPR004604|IPR027417 DNA recombination/repair protein RecN|P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal GO:0005524|GO:0006281|GO:0006310 G3DSA:3.40.50.300|PF02463|PIRSF003128|SSF52540|TIGR00634 NJ56_RS10285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002504|IPR016064|IPR017437|IPR017438 ATP-NAD kinase, PpnK-type, all-beta|Inorganic polyphosphate/ATP-NAD kinase, domain 1|NAD kinase|NAD kinase/diacylglycerol kinase-like domain GO:0003951|GO:0006741|GO:0008152|GO:0019674 G3DSA:2.60.200.30|G3DSA:3.40.50.10330|MF_00361|PF01513|SSF111331 NJ56_RS10295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000740|IPR009012|IPR013805 GrpE nucleotide exchange factor|GrpE nucleotide exchange factor, coiled-coil|GrpE nucleotide exchange factor, head GO:0000774|GO:0006457|GO:0042803|GO:0051087 G3DSA:2.30.22.10|G3DSA:3.90.20.20|MF_01151|PF01025|PR00773|PS01071|SSF51064|SSF58014 NJ56_RS10300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002043|IPR005122|IPR018085 Uracil-DNA glycosylase family 1|Uracil-DNA glycosylase, active site|Uracil-DNA glycosylase-like GO:0004844|GO:0006281|GO:0006284|GO:0016799 G3DSA:3.40.470.10|MF_00148|PF03167|PS00130|SM00986|SM00987|SSF52141|TIGR00628 NJ56_RS10305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001150|IPR011140|IPR019777 Autonomous glycyl radical cofactor GrcA|Formate C-acetyltransferase glycine radical, conserved site|Glycine radical domain GO:0003824|GO:0008152 G3DSA:3.20.70.20|MF_00806|PF01228|PIRSF000378|PS00850|SSF51998|TIGR04365 NJ56_RS10310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024499|IPR029058 Alpha/Beta hydrolase fold|Protein of unknown function DUF2974 G3DSA:3.40.50.1820|PF11187|SSF53474 NJ56_RS10315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002110|IPR020683 Ankyrin repeat|Ankyrin repeat-containing domain GO:0005515 G3DSA:1.25.40.20|PF00023|PF12796|SM00248|SSF48403 NJ56_RS10320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000629|IPR001650|IPR011545|IPR014001|IPR027417|IPR028621 ATP-dependent RNA helicase DEAD-box, conserved site|ATP-dependent RNA helicase SrmB|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000027|GO:0003676|GO:0004004|GO:0005524 G3DSA:3.40.50.300|MF_00967|PF00270|PF00271|PS00039|SM00487|SM00490|SSF52540 NJ56_RS10325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR007848|IPR022882|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|S-adenosyl-L-methionine-dependent methyltransferase|tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0003676|GO:0008168|GO:0016430|GO:0032259 G3DSA:3.40.50.150|MF_01872|PF05175|PR00507|PS00092|SSF53335 NJ56_RS10330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003953|IPR005288|IPR015939|IPR023753|IPR027477 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|L-aspartate oxidase|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain GO:0005737|GO:0008734|GO:0009435|GO:0016491|GO:0055114 G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|PF02910|PIRSF000171|PR00368|SSF46977|SSF51905|SSF56425|TIGR00551 NJ56_RS10335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000838|IPR007627|IPR011991|IPR013249|IPR013324|IPR013325|IPR014284|IPR014286 RNA polymerase sigma factor 70, ECF, conserved site|RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70 RpoE type|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PS01063|SSF88659|SSF88946|TIGR02937|TIGR02939 NJ56_RS10340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005572|IPR005573|IPR026279 Anti sigma-E protein RseA, C-terminal|Anti sigma-E protein RseA, N-terminal|Sigma-E factor negative regulatory protein RseA GO:0006950|GO:0016989 PF03872|PF03873|PIRSF016938|SSF89069 NJ56_RS10345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005588|IPR033434|IPR033436 MucB/RseB|MucB/RseB, C-terminal|MucB/RseB, N-terminal G3DSA:2.50.20.10|PF03888|PF17188|PIRSF005427 NJ56_RS10350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007359|IPR026268 Positive regulator of sigma(E), RseC/MucC|Protein RseC PF04246|PIRSF004923 NJ56_RS10355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000640|IPR000795|IPR004161|IPR005225|IPR006297|IPR013842|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor 4|Elongation factor EFG, domain V-like|GTP-binding protein LepA, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2 GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00071|PF00009|PF00679|PF03144|PF06421|PR00315|PS00301|SSF52540|SSF54980|TIGR00231|TIGR01393 NJ56_RS10360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000223|IPR015927|IPR019533|IPR019757|IPR019758 Peptidase S24/S26A/S26B/S26C|Peptidase S26|Peptidase S26A, signal peptidase I|Peptidase S26A, signal peptidase I, conserved site|Peptidase S26A, signal peptidase I, lysine active site GO:0006508|GO:0008236|GO:0016020|GO:0016021 G3DSA:2.10.109.10|PF00717|PF10502|PR00727|PS00760|PS00761|SSF51306|TIGR02227 NJ56_RS10365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000999|IPR011907|IPR014720 Double-stranded RNA-binding domain|Ribonuclease III|Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396|GO:0016075 G3DSA:1.10.1520.10|G3DSA:3.30.160.20|MF_00104|PF00035|PF14622|PS00517|SM00358|SM00535|SSF54768|SSF69065|TIGR02191 NJ56_RS10370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004044|IPR005225|IPR005662|IPR006073|IPR009019|IPR015946|IPR027417 GTP binding domain|GTP-binding protein Era|K Homology domain, type 2|K homology domain, prokaryotic type|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0003723|GO:0005525|GO:0005622 G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00367|PF01926|PF07650|PR00326|SSF52540|SSF54814|TIGR00231|TIGR00436 NJ56_RS10375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003717|IPR012340|IPR022572 DNA replication/recombination mediator RecO, N-terminal|Nucleic acid-binding, OB-fold|Recombination protein O, RecO GO:0006281|GO:0006310 G3DSA:2.40.50.140|MF_00201|PF02565|PF11967|SSF50249|SSF57863|TIGR00613 NJ56_RS10380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004569|IPR013785 Aldolase-type TIM barrel|Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0003824|GO:0005737|GO:0008615|GO:0033856 G3DSA:3.20.20.70|MF_00279|PF03740|SSF63892|TIGR00559 NJ56_RS10385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002582|IPR004568|IPR008278 4'-phosphopantetheinyl transferase superfamily|Holo-[acyl carrier protein] synthase|Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 G3DSA:3.90.470.20|MF_00101|PD004282|PF01648|SSF56214|TIGR00516|TIGR00556 NJ56_RS10390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain G3DSA:3.30.70.20|PF12838|PS00198|SSF54862 NJ56_RS10395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000281|IPR001347|IPR009057|IPR011991 Helix-turn-helix protein RpiR|Homeobox domain-like|Sugar isomerase (SIS)|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|SSF46689|SSF53697 NJ56_RS10400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001347|IPR005486|IPR005488 Glucokinase regulatory protein, conserved site|N-acetylmuramic acid 6-phosphate etherase MurQ|Sugar isomerase (SIS) GO:0016835|GO:0046348|GO:0097367|GO:1901135 G3DSA:1.10.8.10|G3DSA:3.40.50.10490|MF_00068|PF01380|PS01272|SSF53697|TIGR00274 NJ56_RS10405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001996|IPR003352|IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site|Phosphotransferase system, EIIC|Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401|GO:0016020 G3DSA:3.30.1360.60|PF00367|PF02378|PS01035|SSF55604 NJ56_RS10410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006435|IPR023214 HAD-like domain|HAD-superfamily hydrolase, subfamily IF, YfhB G3DSA:3.40.50.1000|PF12710|SSF56784|TIGR01545 NJ56_RS10415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016192|IPR016193|IPR028883 APOBEC/CMP deaminase, zinc-binding|Cytidine deaminase-like|tRNA-specific adenosine deaminase GO:0002100|GO:0003824|GO:0008251|GO:0008270|GO:0016787 G3DSA:3.40.140.10|MF_00972|PF14437|PS00903|SSF53927 NJ56_RS10420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000189|IPR001638|IPR008258|IPR023346|IPR023703 Lysozyme-like domain|Membrane-bound lytic murein transglycosylase F|Prokaryotic transglycosylase, active site|Solute-binding protein family 3/N-terminal domain of MltF|Transglycosylase SLT domain 1 GO:0000270|GO:0008933|GO:0016020|GO:0016837 G3DSA:1.10.530.10|G3DSA:3.40.190.10|MF_02016|PF00497|PF01464|PS00922|SM00062|SSF53850|SSF53955 NJ56_RS10425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010073|IPR010918|IPR016188|IPR029062 AIR synthase-related protein, C-terminal domain|Class I glutamine amidotransferase-like|Phosphoribosylformylglycinamidine synthase|PurM-like, N-terminal domain GO:0004642|GO:0006189 G3DSA:3.30.1330.10|G3DSA:3.40.50.880|G3DSA:3.90.650.10|MF_00419|PF02769|PF13507|SM01211|SSF109736|SSF52317|SSF55326|SSF56042|SSF82697|TIGR01735 NJ56_RS10440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003661|IPR004358 Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 NJ56_RS10445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025262 Quorum-sensing regulator protein G PD117379|PF13942 NJ56_RS10450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR002078|IPR003593|IPR009057|IPR011006|IPR025662|IPR025943|IPR025944|IPR027417 AAA+ ATPase domain|CheY-like superfamily|Homeobox domain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PS00675|PS00676|PS00688|SM00382|SM00448|SSF46689|SSF52172|SSF52540 NJ56_RS10455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000132|IPR003010|IPR003694|IPR014445|IPR014729|IPR022310 Carbon-nitrogen hydrolase|Glutamine-dependent NAD(+) synthetase|NAD(+) synthetase|NAD/GMP synthase|Nitrilase/cyanide hydratase, conserved site|Rossmann-like alpha/beta/alpha sandwich fold GO:0003952|GO:0005524|GO:0006807|GO:0009435|GO:0016810 G3DSA:3.40.50.620|G3DSA:3.60.110.10|PF00795|PF02540|PIRSF006630|PS00920|SSF52402|SSF56317|TIGR00552 NJ56_RS10460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002187|IPR002332|IPR011322|IPR015867|IPR017918 Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein P-II, urydylation site|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII, conserved site|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0006808|GO:0030234 G3DSA:3.30.70.120|PF00543|PIRSF039144|PR00340|PS00496|PS00638|SM00938|SSF54913 NJ56_RS10465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019733 Uncharacterised protein family YhfT PF10797 NJ56_RS10470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021238 Protein of unknown function DUF2620 PF10941 NJ56_RS10475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001559|IPR032466 Metal-dependent hydrolase|Phosphotriesterase GO:0008270|GO:0009056 G3DSA:3.20.20.140|PF02126|PIRSF016839|SSF51556 NJ56_RS10480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001608|IPR029066 Alanine racemase, N-terminal|PLP-binding barrel G3DSA:3.20.20.10|PF01168|SSF51419 NJ56_RS10485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011608 PRD domain GO:0006355 G3DSA:1.10.1790.10|SSF63520 NJ56_RS10490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011991|IPR032791 Uncharacterised protein YhfZ, C-terminal domain|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF14502|PF14503|SSF46785|SSF53850 NJ56_RS10495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000971|IPR001221|IPR001433|IPR008333|IPR009050|IPR017938|IPR023950 Flavohemoprotein|Globin|Globin-like|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0008941|GO:0016491|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 G3DSA:1.10.490.10|G3DSA:2.40.30.10|G3DSA:3.40.50.80|MF_01252|PF00042|PF00175|PF00970|PR00410|SSF46458|SSF52343|SSF63380 NJ56_RS10500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001085|IPR015421|IPR015422|IPR015424|IPR019798 Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|Serine hydroxymethyltransferase|Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0003824|GO:0004372|GO:0006545|GO:0030170|GO:0035999 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00051|PF00464|PIRSF000412|PS00096|SSF53383 NJ56_RS10505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020846|IPR024989|IPR026032 Major facilitator superfamily associated domain|Major facilitator superfamily domain|Probable 3-phenylpropionic acid transporter G3DSA:1.20.1250.20|PF12832|PIRSF004925|SSF103473 NJ56_RS10510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011608 PRD domain GO:0006355 G3DSA:1.10.1790.10|PF00874|SSF63520 NJ56_RS10515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010412|IPR016537 Protein of unknown function DUF1007|Uncharacterised conserved protein UCP008159, PF06226|PIRSF008159 NJ56_RS10520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 PF03824 NJ56_RS10525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000760|IPR020550|IPR020583|IPR022337 Inositol monophosphatase, SuhB|Inositol monophosphatase, conserved site|Inositol monophosphatase, metal-binding site|Inositol monophosphatase-like GO:0008934|GO:0046854|GO:0046855 G3DSA:3.30.540.10|G3DSA:3.40.190.80|PF00459|PR00377|PR01959|PS00629|PS00630|SSF56655 NJ56_RS10530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001537|IPR004384|IPR029026|IPR029028 Alpha/beta knot methyltransferases|RNA methyltransferase TrmH, group 1|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 G3DSA:3.40.1280.10|PF00588|PIRSF004808|SSF75217|TIGR00050 NJ56_RS10535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000944|IPR010242|IPR011991|IPR030489 Transcription factor HTH, IscR|Transcription regulator Rrf2-type|Transcription regulator Rrf2-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003690|GO:0003700|GO:0006355 G3DSA:1.10.10.10|MF_01176|PF02082|PS01332|SSF46785|TIGR00738|TIGR02010 NJ56_RS10540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000192|IPR010240|IPR015421|IPR015422|IPR015424|IPR016454|IPR020578 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulfurase|Cysteine desulfurase IscS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0030170|GO:0031071|GO:0044571 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00331|PF00266|PIRSF005572|PS00595|SSF53383|TIGR02006 NJ56_RS10545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002871|IPR011339 ISC system FeS cluster assembly, IscU scaffold|NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 G3DSA:3.90.1010.10|PF01592|SSF82649|TIGR01999 NJ56_RS10550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000361|IPR011302|IPR016092|IPR017870 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion, C-terminal, conserved site|Iron-binding protein IscA, proteobacteria GO:0005198|GO:0005506|GO:0051536|GO:0097428 G3DSA:2.60.300.12|MF_01429|PF01521|PS01152|SSF89360|TIGR00049|TIGR02011 NJ56_RS10555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001623|IPR004640|IPR009073 Co-chaperone Hsc20|Co-chaperone HscB, C-terminal oligomerisation domain|DnaJ domain GO:0001671|GO:0051087|GO:0051259|GO:0097428 G3DSA:1.10.287.110|G3DSA:1.20.1280.20|MF_00682|PF00226|PF07743|SM00271|SSF46565|SSF47144|TIGR00714 NJ56_RS10560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010236|IPR013126|IPR018181|IPR029047|IPR029048 Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain|Heat shock protein 70kD, peptide-binding domain|ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.420.40|MF_00679|PF00012|PR00301|PS00297|PS00329|PS01036|SSF100920|SSF100934|SSF53067|TIGR01991 NJ56_RS10565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001041|IPR001055|IPR011536|IPR012675|IPR018298 2Fe-2S ferredoxin-type iron-sulfur binding domain|Adrenodoxin|Adrenodoxin, iron-sulphur binding site|Beta-grasp domain|Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051536|GO:0051537 G3DSA:3.10.20.30|PF00111|PR00355|PS00814|SSF54292|TIGR02007 NJ56_RS10570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 G3DSA:1.10.10.600|PF04384|PIRSF039003|SSF140319|TIGR03412 NJ56_RS10575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000819|IPR008330|IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B|Peptidase M17, leucyl aminopeptidase, C-terminal|Peptidase M17, peptidase B GO:0004177|GO:0005622|GO:0005737|GO:0006508|GO:0008235|GO:0019538|GO:0030145 G3DSA:3.40.630.10|MF_00504|PF00883|PF12404|PIRSF036388|PR00481|PS00631|SSF53187 NJ56_RS10580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009839|IPR027945 SseB protein N-terminal domain|SseB protein, C-terminal PF07179|PF14581 NJ56_RS10585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001599|IPR002890|IPR008930|IPR011625|IPR013783|IPR019565|IPR026284 Alpha-2-macroglobulin|Alpha-2-macroglobulin domain protein, bacteria|Alpha-2-macroglobulin, N-terminal|Alpha-2-macroglobulin, N-terminal 2|Alpha-2-macroglobulin, thiol-ester bond-forming|Immunoglobulin-like fold|Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid GO:0004866 G3DSA:1.50.10.20|G3DSA:2.60.120.430|G3DSA:2.60.40.10|PF00207|PF01835|PF07703|PF10569|PF11974|PIRSF038980|SM01359|SM01360|SSF48239 NJ56_RS10590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001264|IPR001460|IPR009647|IPR011815|IPR012338|IPR023346 Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain|Penicillin-binding protein 1C|Penicillin-binding protein, transpeptidase|Penicillin-binding, C-terminal GO:0008658|GO:0008955|GO:0009252 G3DSA:1.10.3810.10|G3DSA:3.40.710.10|PF00905|PF00912|PF06832|SSF53955|SSF56601|TIGR02073 NJ56_RS10595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011024 Gamma-crystallin-related G3DSA:2.60.120.200|G3DSA:2.60.20.10|G3DSA:3.40.630.30|PF03995|SSF49695 NJ56_RS10600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001564|IPR023005|IPR034907 Nucleoside diphosphate kinase|Nucleoside diphosphate kinase, active site|Nucleoside diphosphate kinase-like domain GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 G3DSA:3.30.70.141|MF_00451|PF00334|PR01243|PS00469|SM00562|SSF54919 NJ56_RS10605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004383|IPR007197|IPR013785|IPR027492 Aldolase-type TIM barrel|Dual-specificity RNA methyltransferase RlmN|Radical SAM|Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0003824|GO:0005737|GO:0006364|GO:0008173|GO:0030488|GO:0051536|GO:0070475 G3DSA:3.20.20.70|MF_01849|PF04055|PIRSF006004|SSF102114|TIGR00048 NJ56_RS10610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR013360|IPR019734 Pilus biogenesis/stability type IV, PilW|Tetratricopeptide repeat|Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.40.10|PF13181|PF13431|SM00028|SSF48452|TIGR02521 NJ56_RS10615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982|IPR025194 Cro/C1-type helix-turn-helix domain|Domain of unknown function DUF4115|Lambda repressor-like, DNA-binding domain GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF13413|PF13464|SM00530|SSF47413 NJ56_RS10620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004588|IPR011005|IPR016425|IPR029065 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type|Dihydropteroate synthase-like|Enolase C-terminal domain-like GO:0005506|GO:0008299|GO:0016114|GO:0044237|GO:0046429|GO:0055114 G3DSA:3.20.20.120|MF_00159|PF04551|PIRSF004640|SSF51717|SSF56014|TIGR00612 NJ56_RS10625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004154|IPR004516|IPR015807 Anticodon-binding|Histidine-tRNA ligase|Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0004821|GO:0005524|GO:0005737|GO:0006427 G3DSA:3.30.930.10|G3DSA:3.40.50.800|MF_00127|PF03129|PF13393|PIRSF001549|SSF52954|SSF55681|TIGR00442 NJ56_RS10630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR018704|IPR026039 Tetratricopeptide repeat-like domain|Tetratricopeptide-like helical domain|Uncharacterised protein family UPF0070 GO:0005515 G3DSA:1.25.40.10|PF09976|PIRSF006170|SSF48452 NJ56_RS10635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002372|IPR011047|IPR015943|IPR017687|IPR018391 Outer membrane protein assembly factor BamB|Pyrrolo-quinoline quinone beta-propeller repeat|Pyrrolo-quinoline quinone repeat|Quinoprotein alcohol dehydrogenase-like superfamily|WD40/YVTN repeat-like-containing domain GO:0005515 G3DSA:2.130.10.10|G3DSA:2.140.10.10|MF_00923|PF13360|SM00564|SSF50998|TIGR03300 NJ56_RS10640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005225|IPR006073|IPR015946|IPR016484|IPR027417|IPR032859 GTP binding domain|GTP-binding protein EngA|GTPase Der, C-terminal KH-domain-like|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0005525 G3DSA:1.20.120.430|G3DSA:3.30.300.20|MF_00195|PF01926|PF14714|PIRSF006485|PR00326|SSF52540|TIGR00231|TIGR03594 NJ56_RS10645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010807|IPR029037 Protein of unknown function DUF1407|YfgJ-like G3DSA:2.20.28.20|PD060428|PF07191|SSF161187 NJ56_RS10650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003753|IPR016102|IPR020579|IPR025824 Exonuclease VII, large subunit|Exonuclease VII, large subunit, C-terminal|OB-fold nucleic acid binding domain|Succinyl-CoA synthetase-like GO:0003676|GO:0006308|GO:0008855|GO:0009318 G3DSA:2.40.50.140|G3DSA:3.40.50.261|MF_00378|PF02601|PF13742|TIGR00237 NJ56_RS10655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR001093|IPR005990|IPR013785|IPR015875 Aldolase-type TIM barrel|CBS domain|IMP dehydrogenase / GMP reductase, conserved site|IMP dehydrogenase/GMP reductase|Inosine-5'-monophosphate dehydrogenase GO:0003824|GO:0003938|GO:0006164|GO:0016491|GO:0055114 G3DSA:3.20.20.70|MF_01964|PF00478|PF00571|PIRSF000130|PS00487|SM00116|SM01240|SSF51412|SSF54631|TIGR01302 NJ56_RS10660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001674|IPR004739|IPR014729|IPR017926|IPR022310|IPR022955|IPR029062 Class I glutamine amidotransferase-like|GMP synthase|GMP synthase, C-terminal|GMP synthase, glutamine amidotransferase|Glutamine amidotransferase|NAD/GMP synthase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003922|GO:0005524|GO:0006164|GO:0006177 G3DSA:3.30.300.10|G3DSA:3.40.50.620|G3DSA:3.40.50.880|MF_00344|PF00117|PF00958|PF02540|PR00096|PR00097|PR00099|SSF52317|SSF52402|SSF54810|TIGR00884|TIGR00888 NJ56_RS10665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001064|IPR011024 Beta/gamma crystallin|Gamma-crystallin-related G3DSA:2.60.20.10|G3DSA:2.80.10.50|PF00030|SM00247|SSF49695 NJ56_RS10680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026870 Zinc-ribbon domain PF13240 NJ56_RS10695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022037 Protein of unknown function DUF3606 PF12244 NJ56_RS10700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004399|IPR013749|IPR029056 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase|Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Ribokinase-like GO:0008972|GO:0009228 G3DSA:3.40.1190.20|PF08543|SSF53613|TIGR00097 NJ56_RS10710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 G3DSA:3.40.1420.10|PF08816|PIRSF009103|SSF89872 NJ56_RS10715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001206|IPR005218|IPR016064|IPR017438|IPR022433 Diacylglycerol kinase, catalytic domain|Diacylglycerol/lipid kinase|Inorganic polyphosphate/ATP-NAD kinase, domain 1|Lipid kinase YegS|NAD kinase/diacylglycerol kinase-like domain GO:0001727|GO:0003951|GO:0008152|GO:0016301|GO:0046872 G3DSA:3.40.50.10330|MF_01377|PF00781|SM00046|SSF111331|TIGR00147|TIGR03702 NJ56_RS10720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001539|IPR013785|IPR032525 Aldolase-type TIM barrel|Peptidase U32|Peptidase family U32, C-terminal GO:0003824|GO:0006508|GO:0008233 G3DSA:3.20.20.70|PF01136|PF16325|PS01276 NJ56_RS10725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010879 Domain of unknown function DUF1508 G3DSA:3.30.160.160|PF07411|SSF160113 NJ56_RS10730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 NJ56_RS10735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003660|IPR003661|IPR004358 HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PR00344|SM00304|SM00387|SM00388|SSF158472|SSF47384|SSF55874 NJ56_RS10740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004638|IPR011701|IPR020846|IPR023721 Drug resistance transporter EmrB/QacA subfamily|Major facilitator superfamily|Major facilitator superfamily domain|Multidrug resistance protein MdtD, putative GO:0006810|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|MF_01577|PF07690|PR01036|SSF103473|TIGR00711 NJ56_RS10745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001036|IPR023931|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains|Multidrug resistance protein MdtC GO:0005215|GO:0006810|GO:0016020 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|MF_01424|PF00873|PR00702|SSF82693|SSF82714|SSF82866 NJ56_RS10750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001036|IPR022831|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains|Multidrug resistance protein MdtB GO:0005215|GO:0006810|GO:0016020 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|MF_01423|PF00873|PR00702|SSF82693|SSF82714|SSF82866 NJ56_RS10755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006143|IPR022824 Multidrug resistance protein MdtA|RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 G3DSA:1.20.1600.10|MF_01422|PF13437|PF13533|SSF111369|TIGR01730 NJ56_RS10760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS10765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS10770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS10775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR018030|IPR025885|IPR025949 Fimbrial membrane usher, conserved site|Outer membrane usher protein|PapC, N-terminal domain|PapC-like, C-terminal domain GO:0005215|GO:0005515|GO:0006810|GO:0016020 PF00577|PF13953|PF13954|PS01151|SSF141729 NJ56_RS10780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001829|IPR008962|IPR013783|IPR016147|IPR016148|IPR018046 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, C-terminal|Pili assembly chaperone, N-terminal|Pili assembly chaperone, bacterial|Pili assembly chaperone, conserved site GO:0030288|GO:0043711|GO:0061077|GO:0071555 G3DSA:2.60.40.10|PF00345|PF02753|PR00969|PS00635|SSF49354|SSF49584 NJ56_RS10785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|SSF49401 NJ56_RS10790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013126|IPR018181 Heat shock protein 70 family|Heat shock protein 70, conserved site G3DSA:3.30.420.40|PF00012|PS00329|SSF53067 NJ56_RS10795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR006667|IPR006668|IPR006669 CBS domain|Magnesium transporter MgtE|Magnesium transporter, MgtE intracellular domain|SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324|GO:0015095|GO:0015693|GO:0016020 G3DSA:1.10.357.20|G3DSA:1.25.60.10|G3DSA:3.10.580.10|PF00571|PF01769|PF03448|SM00924|SSF158791|SSF161093|SSF54631|TIGR00400 NJ56_RS10800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022576 Protein of unknown function DUF2633 PD053432|PF11119 NJ56_RS10805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003695|IPR022371|IPR030673 Exopolyphosphatase|Ppx/GppA phosphatase|Pyrophosphatase, GppA/Ppx-type GO:0004309|GO:0006793 G3DSA:3.30.420.150|G3DSA:3.30.420.40|PF02541|PIRSF001267|SSF109604|SSF53067|TIGR03706 NJ56_RS10810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003414|IPR024953|IPR025198|IPR025200 Polyphosphate kinase|Polyphosphate kinase C-terminal domain|Polyphosphate kinase N-terminal domain|Polyphosphate kinase middle domain GO:0006799|GO:0008976|GO:0009358 G3DSA:1.20.58.310|G3DSA:3.30.1840.10|G3DSA:3.30.870.10|MF_00347|PF02503|PF13089|PF13090|PIRSF015589|SSF140356|SSF143724|SSF56024|TIGR03705 NJ56_RS10815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR015943 ABC transporter type 1, transmembrane domain MetI-like|WD40/YVTN repeat-like-containing domain GO:0005515|GO:0006810|GO:0016020 G3DSA:1.10.3720.10|G3DSA:2.130.10.10|PF00528|SSF161098|SSF69322 NJ56_RS10820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR005672 ABC transporter type 1, transmembrane domain MetI-like|Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0006810|GO:0016020|GO:0035435 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00974 NJ56_RS10825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR005670|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Phosphate transport system permease protein 1 GO:0005315|GO:0005524|GO:0016020|GO:0016887|GO:0035435 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR00972 NJ56_RS10830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF13302|SSF55729 NJ56_RS10835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001555|IPR002376|IPR004607 Formyl transferase, N-terminal|Phosphoribosylglycinamide formyltransferase|Phosphoribosylglycinamide formyltransferase, active site GO:0004644|GO:0006189|GO:0009058|GO:0016742 G3DSA:3.40.50.170|MF_01930|PF00551|PS00373|SSF53328|TIGR00639 NJ56_RS10845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004733|IPR010918|IPR016188 AIR synthase-related protein, C-terminal domain|Phosphoribosylformylglycinamidine cyclo-ligase|PurM-like, N-terminal domain GO:0004641|GO:0005737|GO:0006189 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_00741|PF00586|PF02769|SSF55326|SSF56042|TIGR00878 NJ56_RS10855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005765|IPR029057|IPR034332 Phosphoribosyltransferase-like|Uracil phosphoribosyl transferase|Uracil phosphoribosyltransferase, bacterial-type GO:0004845|GO:0006223 G3DSA:3.40.50.2020|MF_01218_B|PF14681|SSF53271|TIGR01091 NJ56_RS10860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006042|IPR006043 Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PF00860|PS01116|TIGR00801 NJ56_RS10865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013317|IPR017788|IPR020591|IPR022864|IPR027417 Chromosomal replication control, initiator DnaA-like|Chromosomal replication initiator protein DnaA|DnaA regulatory inactivator Hda|DnaA regulatory inactivator Hda, Enterobacteriaceae|P-loop containing nucleoside triphosphate hydrolase GO:0032297 G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_01158|PF00308|PR00051|SSF52540|TIGR03420 NJ56_RS10870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006659|IPR006660|IPR012336 Arsenate reductase|Arsenate reductase-like|Thioredoxin-like fold GO:0008794|GO:0055114 G3DSA:3.40.30.10|PF03960|SSF52833|TIGR00014 NJ56_RS10875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001915|IPR011990|IPR030873 Beta-barrel assembly-enhancing protease|Peptidase M48|Tetratricopeptide-like helical domain GO:0004222|GO:0005515|GO:0006508|GO:0008237|GO:0016020|GO:0061077 G3DSA:1.25.40.10|G3DSA:3.30.2010.10|MF_00997|PF01435|PF14559|SSF48452 NJ56_RS10880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002549 Transmembrane protein TqsA-like PF01594 NJ56_RS10885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000866|IPR012336|IPR024706 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Thioredoxin-like fold GO:0016209|GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF00578|PIRSF000239|SSF52833 NJ56_RS10890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 G3DSA:3.30.70.260|PF13740|PIRSF028103|SSF55021 NJ56_RS10895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002220|IPR005263|IPR013785|IPR020624|IPR020625 4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site|Schiff base-forming aldolase, conserved site GO:0003824|GO:0008152|GO:0008840|GO:0009089|GO:0016829 G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00665|PS00666|SM01130|SSF51569|TIGR00674 NJ56_RS10900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010653|IPR014524 NlpB/DapX lipoprotein|Outer membrane protein assembly factor BamC MF_00924|PF06804|PIRSF026343 NJ56_RS10905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001636|IPR018236|IPR028923 Phosphoribosylaminoimidazole-succinocarboxamide synthase|SAICAR synthetase, conserved site|SAICAR synthetase/ADE2, N-terminal GO:0004639|GO:0006164 G3DSA:3.30.200.20|G3DSA:3.30.470.20|MF_00137|PF01259|PS01057|PS01058|SSF56104|TIGR00081 NJ56_RS10910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007382 Uncharacterised protein family UPF0756, transmembrame MF_01874|PD021096|PF04284 NJ56_RS10915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR007807|IPR016181|IPR024914|IPR027417|IPR033442 Acyl-CoA N-acyltransferase|GNAT domain|Helicase domain|P-loop containing nucleoside triphosphate hydrolase|tRNA(Met) cytidine acetyltransferase TmcA|tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain GO:0000049|GO:0002101|GO:0008080|GO:0051391|GO:0051392 G3DSA:3.40.50.300|G3DSA:3.40.630.30|MF_01886|PF05127|PF13718|PF17176|SSF52540|SSF55729 NJ56_RS10920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003140|IPR029058 Alpha/Beta hydrolase fold|Phospholipase/carboxylesterase/thioesterase GO:0016787 G3DSA:3.40.50.1820|PF02230|SSF53474 NJ56_RS10925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020910 Uncharacterised protein family UPF0370 MF_01566|PF13980 NJ56_RS10930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003709|IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain|Peptidase M15B GO:0006508|GO:0008233 G3DSA:3.30.1380.10|PF02557|SSF55166 NJ56_RS10935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001261|IPR002933|IPR005941|IPR011650 ArgE/DapE/ACY1/CPG2/YscS, conserved site|Peptidase M20|Peptidase M20, dimerisation domain|Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0006508|GO:0008152|GO:0008237|GO:0009014|GO:0009089|GO:0016787 G3DSA:3.40.630.10|MF_01690|PF01546|PF07687|PS00758|SSF53187|SSF55031|TIGR01246 NJ56_RS10940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006504|IPR006660|IPR012336 Arsenate reductase-like|Thioredoxin-like fold|Transcriptional regulator Spx/MgsR G3DSA:3.40.30.10|PF03960|SSF52833|TIGR01617 NJ56_RS10945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002701|IPR008240|IPR020822 Chorismate mutase|Chorismate mutase, periplasmic|Chorismate mutase, type II GO:0046417 G3DSA:1.20.59.10|PF01817|PIRSF026640|SM00830|SSF48600|TIGR01806 NJ56_RS10950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990 Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.40.10|PF12688|SSF48452 NJ56_RS10955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001036|IPR004764|IPR027463 Acriflavin resistance protein|Hydrophobe/amphiphile efflux-1 HAE1|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00915 NJ56_RS10960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017162 Uncharacterised conserved protein UCP037266 PF09904|PIRSF037266 NJ56_RS10965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR001789|IPR011006|IPR011991|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 NJ56_RS10975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004496|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Ferredoxin-type protein NapF GO:0005506|GO:0009055|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.30.70.20|PF12838|PF13187|PS00198|SSF54862|TIGR00402 NJ56_RS10980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005623 Chaperone NapD, nitrate reductase assembly PF03927 NJ56_RS10985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006656|IPR006657|IPR006963|IPR009010|IPR010051|IPR019546|IPR027467 Aspartate decarboxylase-like domain|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, molybdopterin cofactor binding site|Periplasmic nitrate reductase, large subunit|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal GO:0008940|GO:0016491|GO:0030151|GO:0042128|GO:0042597|GO:0051539|GO:0055114 G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.50.740|MF_01630|PF00384|PF01568|PF04879|PF10518|PS00551|SM00926|SSF50692|SSF53706|TIGR01409|TIGR01706 NJ56_RS10990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005591|IPR011031 Multihaem cytochrome|Nitrate reductase cytochrome c-type subunit NapB G3DSA:1.10.1130.10|PF03892|PIRSF006105|SSF48695 NJ56_RS10995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005126|IPR011031|IPR011885|IPR024717 Denitrification system component NapC/NirT/NrfH|Multihaem cytochrome|NapC/NirT cytochrome c, N-terminal|Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 G3DSA:1.10.468.10|PF03264|PIRSF000013|SSF48695|TIGR02161 NJ56_RS11000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR004385|IPR015797 NUDIX hydrolase domain|NUDIX hydrolase domain-like|Nucleoside diphosphate pyrophosphatase GO:0016787|GO:0016818|GO:0046872 G3DSA:3.90.79.10|PF00293|SSF55811|TIGR00052 NJ56_RS11005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002505|IPR012188|IPR012301|IPR012302|IPR015884|IPR016040 Malic enzyme, N-terminal domain|Malic enzyme, NAD-binding|Malic enzyme, conserved site|NAD(P)-binding domain|NAD(P)-dependent malic enzyme|Phosphate acetyl/butaryl transferase GO:0004470|GO:0004471|GO:0006108|GO:0008152|GO:0016746|GO:0046872|GO:0051287|GO:0055114 G3DSA:3.40.50.10380|G3DSA:3.40.50.720|G3DSA:3.40.718.10|PF00390|PF01515|PF03949|PIRSF036684|PS00331|SM00919|SM01274|SSF51735|SSF53223|SSF53659 NJ56_RS11010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003791 Protein of unknown function UPF0178 MF_00489|PF02639 NJ56_RS11015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001260|IPR018375 Coproporphyrinogen III oxidase, aerobic|Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 G3DSA:3.40.1500.10|MF_00333|PF01218|PIRSF000166|PR00073|PS01021|SSF102886 NJ56_RS11020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181|IPR017255|IPR023072 Acetyltransferase, GNAT, predicted|Acetyltransferase, YpeA|Acyl-CoA N-acyltransferase|GNAT domain GO:0008080|GO:0016747 G3DSA:3.40.630.30|MF_01127|PF00583|PIRSF037663|SSF55729 NJ56_RS11030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002182|IPR011664|IPR011990|IPR027417 Abortive infection system protein AbiD/AbiF-like|NB-ARC|P-loop containing nucleoside triphosphate hydrolase|Tetratricopeptide-like helical domain GO:0005515|GO:0043531 G3DSA:1.25.40.120|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00931|PF07751|SSF48452|SSF52540 NJ56_RS11035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021835 Protein of unknown function DUF3427 PF11907 NJ56_RS11040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SSF47413 NJ56_RS11055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011991 Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|SSF46785 NJ56_RS11065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001932 PPM-type phosphatase domain GO:0003824 G3DSA:3.60.40.10|SSF81606 NJ56_RS11075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005220|IPR016052 Bacterial OB-fold|Bacteriophage 933W, L0136 G3DSA:2.40.50.200|PF04076|SSF101756|TIGR00156 NJ56_RS11080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010938 Protein of unknown function DUF1131 G3DSA:2.60.460.10|PD105195|PF06572 NJ56_RS11085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006314|IPR011008 Dimeric alpha-beta barrel|Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 PF04261|SSF54909|TIGR01413 NJ56_RS11090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002220|IPR013785|IPR020624 Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, conserved site GO:0003824|GO:0008152|GO:0016829 G3DSA:3.20.20.70|PF00701|PIRSF001365|PR00146|PS00665|SM01130|SSF51569 NJ56_RS11095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007260|IPR011060|IPR013785 Aldolase-type TIM barrel|Putative N-acetylmannosamine-6-phosphate epimerase|Ribulose-phosphate binding barrel GO:0003824|GO:0006051|GO:0008152|GO:0047465 G3DSA:3.20.20.70|MF_01235|PF04131|SSF51366 NJ56_RS11100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000600 ROK family G3DSA:3.30.420.40|PF00480|PS01125|SSF53067 NJ56_RS11105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004375 YhcH/YjgK/YiaL family G3DSA:2.60.120.370|PF04074|SSF51197|TIGR00022 NJ56_RS11110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000281|IPR001347|IPR009057|IPR011991 Helix-turn-helix protein RpiR|Homeobox domain-like|Sugar isomerase (SIS)|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|SSF46689|SSF53697 NJ56_RS11115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004742|IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain|Sialic acid transporter GO:0015144|GO:0016021|GO:0034219|GO:0055085 G3DSA:1.20.1250.20|MF_01238|PF07690|SSF103473 NJ56_RS11120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 G3DSA:3.40.190.10|PF13531|SSF53850|TIGR00971 NJ56_RS11125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR005667|IPR011865 ABC transporter type 1, transmembrane domain MetI-like|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysT GO:0006810|GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00969|TIGR02139 NJ56_RS11130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR005667|IPR011866 ABC transporter type 1, transmembrane domain MetI-like|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysW GO:0006810|GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00969|TIGR02140 NJ56_RS11135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR005666|IPR008995|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Sulphate transport system permease protein 1 GO:0005524|GO:0006810|GO:0016020|GO:0016887|GO:0042626 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF50331|SSF52540|TIGR00968 NJ56_RS11140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001216|IPR001926|IPR005856|IPR005858 Cysteine synthase|Cysteine synthase CysM|Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004124|GO:0006535 G3DSA:3.40.50.1100|PF00291|PS00901|SSF53686|TIGR01136|TIGR01138 NJ56_RS11145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001127|IPR011055 Duplicated hybrid motif|Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 G3DSA:2.70.70.10|PF00358|PS00371|SSF51261|TIGR00830 NJ56_RS11150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000121|IPR006318|IPR008279|IPR008731|IPR015813|IPR018274|IPR023151|IPR024692 PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphotransferase system, enzyme I|Phosphotransferase system, enzyme I N-terminal|Phosphotransferase system, enzyme I-like|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824|GO:0008965|GO:0009401|GO:0016310|GO:0016772 G3DSA:1.10.274.10|G3DSA:3.20.20.60|G3DSA:3.50.30.10|PF00391|PF02896|PF05524|PIRSF000732|PR01736|PS00370|PS00742|SSF47831|SSF51621|SSF52009|TIGR01417 NJ56_RS11155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000032|IPR001020|IPR002114 Phosphocarrier protein HPr-like|Phosphotransferase system, HPr histidine phosphorylation site|Phosphotransferase system, HPr serine phosphorylation site G3DSA:3.30.1340.10|PF00381|PR00107|PS00369|PS00589|SSF55594|TIGR01003 NJ56_RS11160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001216|IPR001926|IPR005856|IPR005859 Cysteine synthase|Cysteine synthase CysK|Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004124|GO:0006535 G3DSA:3.40.50.1100|PF00291|PS00901|SSF53686|TIGR01136|TIGR01139 NJ56_RS11165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 MF_00468|PF07264 NJ56_RS11170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007449|IPR011919 Cell division protein ZipA|ZipA, C-terminal FtsZ-binding domain GO:0007049|GO:0016021|GO:0090529 G3DSA:3.30.1400.10|MF_00509|PD035754|PF04354|SM00771|SSF64383|TIGR02205 NJ56_RS11175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001357|IPR001679|IPR003583|IPR004149|IPR004150|IPR010994|IPR012340|IPR013839|IPR013840|IPR018239|IPR033136 BRCT domain|Helix-hairpin-helix DNA-binding motif, class 1|NAD-dependent DNA ligase|NAD-dependent DNA ligase, N-terminal|NAD-dependent DNA ligase, OB-fold|NAD-dependent DNA ligase, active site|NAD-dependent DNA ligase, adenylation|NAD-dependent DNA ligase, conserved site|Nucleic acid-binding, OB-fold|RuvA domain 2-like|Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003677|GO:0003911|GO:0006260|GO:0006281 G3DSA:1.10.150.20|G3DSA:1.10.287.610|G3DSA:2.40.50.140|G3DSA:3.30.1490.70|G3DSA:3.30.470.30|G3DSA:3.40.50.10190|MF_01588|PF00533|PF01653|PF03119|PF03120|PF12826|PF14520|PIRSF001604|PS01055|PS01056|SM00278|SM00292|SM00532|SSF47781|SSF50249|SSF52113|SSF56091|TIGR00575 NJ56_RS11180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024530 Putative quorum-sensing-regulated virulence factor PD056452|PF12843 NJ56_RS11185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025577 FlxA-like protein G3DSA:1.20.120.330|PF14282 NJ56_RS11190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009267 Putative nucleotidyltransferase PF06042 NJ56_RS11210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000924|IPR001412|IPR004527|IPR008925|IPR014729|IPR020058|IPR020061|IPR020751|IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding|Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1|Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2|Aminoacyl-tRNA synthetase, class I, conserved site|Glutamate-tRNA ligase, bacterial/mitochondrial|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000049|GO:0000166|GO:0004812|GO:0004818|GO:0005524|GO:0005737|GO:0006418|GO:0006424|GO:0016876|GO:0043039 G3DSA:1.10.10.350|G3DSA:1.10.1160.10|G3DSA:1.10.8.70|G3DSA:3.40.50.620|MF_00022|PF00749|PR00987|PS00178|SSF48163|SSF52374|TIGR00464 NJ56_RS11245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002668|IPR011642|IPR011657 Concentrative nucleoside transporter C-terminal domain|Concentrative nucleoside transporter N-terminal domain|Nucleoside transporter/FeoB GTPase, Gate domain PF01773|PF07662|PF07670 NJ56_RS11250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 MF_00221|PF01566|PR00447|TIGR01197 NJ56_RS11255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019638 Protein of unknown function DUF2502 PF10697 NJ56_RS11260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS11265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007896 Chlorhexidine efflux transporter PF05232 NJ56_RS11270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 G3DSA:3.30.420.40|G3DSA:3.40.367.20|MF_00524|PF02685|SSF53067|TIGR00749 NJ56_RS11275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS11280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR007492|IPR011006 CheY-like superfamily|LytTR DNA-binding domain|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677 G3DSA:2.20.25.10|G3DSA:2.40.50.40|G3DSA:3.40.50.2300|PF00072|PF04397|SM00448|SM00850|SSF52172 NJ56_RS11285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR010559|IPR011620|IPR029016 GAF domain-like|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region|Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 G3DSA:3.30.450.40|G3DSA:3.30.565.10|PF02518|PF06580|PF07694|SM00387|SSF55781|SSF55874 NJ56_RS11290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010856|IPR027443 Isopenicillin N synthase-like|Protein of unknown function DUF1479 G3DSA:2.60.120.330|PF07350|SSF51197 NJ56_RS11295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 NJ56_RS11300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 G3DSA:1.20.950.20|PF01292|SSF81342 NJ56_RS11310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031807|IPR035069 HicB-like antitoxin of toxin-antitoxin system|TTHA1013/TTHA0281-like G3DSA:3.30.2390.10|PF15970|SSF143100 NJ56_RS11315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011757|IPR023346|IPR031304 Lysozyme-like domain|Lytic transglycosylase MltB|Transglycosylase SLT domain 2 G3DSA:1.10.530.10|G3DSA:1.10.8.350|PF13406|SSF53955|TIGR02282 NJ56_RS11320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004624|IPR013987|IPR013988 PhnA protein|PhnA protein, C-terminal|PhnA protein, N-terminal G3DSA:2.20.25.10|G3DSA:2.30.30.40|PF03831|PF08274|SSF57783|SSF82057|TIGR00686 NJ56_RS11325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008430|IPR011324 Cytotoxic necrotizing factor, Rho-activating domain|Cytotoxic necrotizing factor-like, catalytic G3DSA:3.60.100.10|PF05785|SSF64438 NJ56_RS11335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR005895|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter, haem export, CcmA|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005215|GO:0005524|GO:0016887|GO:0017004|GO:0030288 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR01189 NJ56_RS11340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003544|IPR026031 Cytochrome c-type biogenesis protein CcmB|Cytochrome c-type biogenesis protein CcmB, bacteria GO:0015232|GO:0015886|GO:0016020|GO:0017004 PF03379|PIRSF002764|PR01414|TIGR01190 NJ56_RS11345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002541|IPR003557 Cytochrome c assembly protein|Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004|GO:0020037 PF01578|PR01386|TIGR01191 NJ56_RS11350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 PF04995|TIGR03141 NJ56_RS11355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 G3DSA:2.40.50.140|MF_01959|PF03100|SSF82093 NJ56_RS11360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002541|IPR003567|IPR003568|IPR032523 Cytochrome c assembly protein|Cytochrome c-type biogenesis protein|Cytochrome c-type biogenesis protein CcmF|Cytochrome c-type biogenesis protein CcmF, C-terminal GO:0015232|GO:0015886|GO:0016020|GO:0017004|GO:0020037 PF01578|PF16327|PR01410|PR01411|TIGR00353 NJ56_RS11365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004799|IPR012336|IPR013740|IPR017937 Periplasmic protein thiol:disulphide oxidoreductase DsbE|Redoxin|Thioredoxin, conserved site|Thioredoxin-like fold GO:0015036|GO:0016491|GO:0017004|GO:0030288|GO:0045454 G3DSA:3.40.30.10|PF08534|PS00194|SSF52833|TIGR00385 NJ56_RS11370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005616 CcmH/CycL/Ccl2/NrfF family PF03918 NJ56_RS11375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR017560 Cytochrome c-type biogenesis protein CcmI|Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.40.10|PF14559|SSF48452|TIGR03142 NJ56_RS11380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007428 MlaA lipoprotein GO:0016020 PF04333|PR01805 NJ56_RS11385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) G3DSA:2.40.160.60|PF03349|SSF56935 NJ56_RS11390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005272|IPR035571 Conserved hypothetical protein CHP00743|UPF0234/UPF0381 domain G3DSA:3.30.70.860|PF04175|TIGR00743 NJ56_RS11395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002155|IPR012806|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Acetyl-CoA C-acyltransferase FadI|Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0003988|GO:0005737|GO:0006631|GO:0008152|GO:0016042|GO:0016747 G3DSA:3.40.47.10|MF_01618|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930|TIGR02446 NJ56_RS11400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001753|IPR006108|IPR006176|IPR006180|IPR008927|IPR012802|IPR013328|IPR016040|IPR029045 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|3-hydroxyacyl-CoA dehydrogenase, conserved site|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|ClpP/crotonase-like domain|Crotonase superfamily|Fatty oxidation complex, alpha subunit FadJ|NAD(P)-binding domain GO:0003824|GO:0003857|GO:0004300|GO:0006631|GO:0006635|GO:0008152|GO:0008692|GO:0016491|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|MF_01617|PF00378|PF00725|PF02737|PS00067|SSF48179|SSF51735|SSF52096|TIGR02440 NJ56_RS11410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004449|IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1|Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 G3DSA:3.40.50.1240|PF00300|SSF53254|TIGR00249 NJ56_RS11415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002625|IPR022990 Smr domain|Uncharacterised protein family UPF0115 MF_01042|PF01713|SM00463|SSF160443 NJ56_RS11420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR004556|IPR007848|IPR017127|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|Modification methylase HemK|Ribosomal protein L3-specific, glutamine-N5-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0005622|GO:0006479|GO:0008168|GO:0008276|GO:0009007|GO:0032259|GO:0032775 G3DSA:1.10.8.10|G3DSA:3.40.50.150|MF_02125|PF05175|PIRSF037167|PS00092|SSF53335|TIGR00536|TIGR03533 NJ56_RS11425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000453|IPR020541 Chorismate synthase|Chorismate synthase, conserved site GO:0004107|GO:0009073 G3DSA:3.60.150.10|MF_00300|PF01264|PIRSF001456|PS00787|PS00788|PS00789|SSF103263|TIGR00033 NJ56_RS11430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005073|IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain|Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 G3DSA:3.30.1380.10|PF03411|PIRSF018455|SSF55166 NJ56_RS11435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 NJ56_RS11440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007411 Elongation factor P hydroxylase PF04315 NJ56_RS11445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014987 Uncharacterised protein family YfcL PF08891 NJ56_RS11450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006076|IPR008471|IPR017610|IPR023032|IPR023753 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain|MnmC-like methyltransferase|tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC|tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0004808|GO:0008033|GO:0008168|GO:0016491|GO:0016645|GO:0055114 G3DSA:3.40.50.150|G3DSA:3.50.50.60|MF_01102|PF01266|PF05430|SSF51905|TIGR03197 NJ56_RS11455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014030|IPR014031|IPR016039|IPR018201|IPR020841 Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|Polyketide synthase, beta-ketoacyl synthase domain|Thiolase-like GO:0003824|GO:0008152 G3DSA:3.40.47.10|PF00109|PF02801|PS00606|SM00825|SSF53901 NJ56_RS11460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007803|IPR027443 Aspartyl/asparaginy/proline hydroxylase|Isopenicillin N synthase-like GO:0018193 G3DSA:2.60.120.330|PF05118|SSF51197 NJ56_RS11465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 PIRSF020588 NJ56_RS11475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012336|IPR017937|IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain|Thioredoxin, conserved site|Thioredoxin-like fold GO:0045454 G3DSA:2.60.40.1250|G3DSA:3.40.30.10|PF11412|PF13899|PS00194|SSF52833 NJ56_RS11480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012336|IPR017937 Thioredoxin, conserved site|Thioredoxin-like fold GO:0045454 G3DSA:3.40.30.10|PF13462|PS00194|SSF52833 NJ56_RS11485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000866|IPR012336 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Thioredoxin-like fold GO:0016209|GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF00578|SSF52833 NJ56_RS11490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000524|IPR004839|IPR011991|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|PR00035|SM00345|SSF46785|SSF53383 NJ56_RS11495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS11500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS11505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR011051|IPR013096|IPR014710|IPR018060|IPR018062|IPR020449 Cupin 2, conserved barrel|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox domain-like|RmlC-like cupin domain|RmlC-like jelly roll fold|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF07883|PF12833|PR00032|PS00041|SM00342|SSF46689|SSF51182 NJ56_RS11510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006139|IPR006140|IPR016040|IPR020921|IPR024531|IPR029752|IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|Erythronate-4-phosphate dehydrogenase|Erythronate-4-phosphate dehydrogenase, dimerisation domain|NAD(P)-binding domain GO:0005737|GO:0008152|GO:0008615|GO:0016616|GO:0033711|GO:0046983|GO:0051287|GO:0055114 G3DSA:3.40.50.720|MF_01825|PF00389|PF02826|PF11890|PS00065|PS00671|SSF51735|SSF52283 NJ56_RS11515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000534|IPR012280|IPR016040 NAD(P)-binding domain|Semialdehyde dehydrogenase, NAD-binding|Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF01118|PF02774|PIRSF000148|SM00859|SSF51735|SSF55347 NJ56_RS11520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001406|IPR020095|IPR020097|IPR020103 Pseudouridine synthase I, TruA|Pseudouridine synthase I, TruA, C-terminal|Pseudouridine synthase I, TruA, alpha/beta domain|Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.70.580|G3DSA:3.30.70.660|MF_00171|PF01416|PIRSF001430|SSF55120|TIGR00071 NJ56_RS11525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032816 SNARE associated Golgi protein PF09335 NJ56_RS11530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000438|IPR029045|IPR034733 Acetyl-CoA carboxylase|Acetyl-CoA carboxylase carboxyl transferase, beta subunit|ClpP/crotonase-like domain GO:0003989|GO:0006633|GO:0009317 G3DSA:3.90.226.10|MF_01395|PF01039|PR01070|SSF52096|TIGR00515 NJ56_RS11535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001645|IPR004101|IPR013221|IPR018109 Folylpolyglutamate synthetase|Folylpolyglutamate synthetase, conserved site|Mur ligase, C-terminal|Mur ligase, central GO:0004326|GO:0005524|GO:0009058|GO:0009396|GO:0016874 G3DSA:3.40.1190.10|G3DSA:3.90.190.20|PF02875|PF08245|PIRSF001563|PS01012|SSF53244|SSF53623|TIGR01499 NJ56_RS11540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007730|IPR032898 Cell division protein DedD|Sporulation-related domain GO:0030428|GO:0032506|GO:0042834 G3DSA:3.30.70.1070|MF_02022|PF05036|SSF110997 NJ56_RS11545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 PF02674 NJ56_RS11550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000836|IPR005854|IPR029055|IPR029057 Amidophosphoribosyltransferase|Nucleophile aminohydrolases, N-terminal|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0004044|GO:0009113|GO:0009116 G3DSA:3.40.50.2020|G3DSA:3.60.20.10|MF_01931|PF00156|PF13522|PIRSF000485|SSF53271|SSF56235|TIGR01134 NJ56_RS11555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003382|IPR004507 Flavin prenyltransferase UbiX/Pad1|Flavoprotein GO:0003824 G3DSA:3.40.50.1950|MF_01984|PF02441|SSF52507|TIGR00421 NJ56_RS11560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001638|IPR005768|IPR018313 Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site|Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0005215|GO:0006810|GO:0030288 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SSF53850|TIGR01096 NJ56_RS11565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS11570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS11575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 NJ56_RS11580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001509|IPR010099|IPR013549|IPR016040 Domain of unknown function DUF1731|Epimerase family protein SDR39U1|NAD(P)-binding domain|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|PF08338|SSF51735|TIGR01777 NJ56_RS11585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004045|IPR004046|IPR010987|IPR012336 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 NJ56_RS11590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001633 EAL domain G3DSA:3.20.20.450|PF00563|SM00052|SSF141868 NJ56_RS11595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000979|IPR020935|IPR024654|IPR029052 Calcineurin-like phosphoesterase domain, lpxH type|Metallo-dependent phosphatase-like|Phosphodiesterase MJ0936/Vps29|Phosphodiesterase YfcE, conserved site G3DSA:3.60.21.10|PF12850|PS01269|SSF56300|TIGR00040 NJ56_RS11600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR015797|IPR024195 NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, YfcD, predicted GO:0016787|GO:0016817 G3DSA:3.90.79.10|PF00293|PIRSF017340|SSF55811 NJ56_RS11605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 PF03611 NJ56_RS11610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 G3DSA:3.40.50.2300|PF02302|SSF52794 NJ56_RS11615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002178|IPR016152 PTS EIIA type-2 domain|Phosphotransferase/anion transporter GO:0005215|GO:0006810 G3DSA:3.40.930.10|PF00359|SSF55804 NJ56_RS11620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS11625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002505|IPR004614|IPR010766|IPR016475|IPR027417|IPR028979 DRTGG|HPr(Ser) kinase/phosphorylase, N-terminal domain-like|P-loop containing nucleoside triphosphate hydrolase|Phosphate acetyl/butaryl transferase|Phosphate acetyltransferase|Phosphate acetyltransferase, bacteria GO:0008152|GO:0008959|GO:0016407|GO:0016746 G3DSA:3.40.1390.20|G3DSA:3.40.50.10750|G3DSA:3.40.50.300|PF01515|PF07085|PF13500|PIRSF006107|SSF52540|SSF53659|SSF75138|TIGR00651 NJ56_RS11630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000890|IPR004372|IPR023865 Acetate/propionate kinase|Aliphatic acid kinase, short-chain|Aliphatic acid kinase, short-chain, conserved site GO:0005622|GO:0006082|GO:0008152|GO:0016301|GO:0016310|GO:0016774 G3DSA:3.30.420.40|MF_00020|PF00871|PIRSF000722|PR00471|PS01075|PS01076|SSF53067|TIGR00016 NJ56_RS11635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007334 Uncharacterised protein family UPF0208 MF_01101|PF04217 NJ56_RS11640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005587|IPR023145|IPR023146 Uncharacterised protein family UPF0304, YfbU|YfbU, alpha-helical bundle domain|YfbU, helix-hairpin domain G3DSA:1.10.287.680|G3DSA:1.10.3190.10|MF_00762|PD035118|PF03887|PIRSF006272|SSF116960 NJ56_RS11650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004680|IPR006037|IPR031312 Citrate transporter-like domain|Regulator of K+ conductance, C-terminal|Sodium/sulphate symporter, conserved site GO:0006813|GO:0008324|GO:0016021|GO:0055085 G3DSA:3.30.70.1450|PF02080|PF03600|PS01271|SSF116726 NJ56_RS11655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003607|IPR006674|IPR022971 5'-deoxynucleotidase YfbR|HD domain|HD/PDEase domain G3DSA:1.10.3210.10|MF_01100|PD353566|PF13023|SM00471|SSF109604 NJ56_RS11660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 NJ56_RS11670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS11675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000440|IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid|NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0016651|GO:0055114 MF_01394|PF00507 NJ56_RS11680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006137|IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit|NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0008137|GO:0048038|GO:0051536|GO:0051539|GO:0055114 G3DSA:3.40.50.700|MF_01356|PF01058|PS01150|SSF56770|TIGR01957 NJ56_RS11685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001135|IPR001268|IPR010218|IPR014029|IPR022885|IPR023062|IPR029014 NAD(P)H-quinone oxidoreductase subunit D/H|NADH dehydrogenase, subunit C|NADH dehydrogenase, subunit CD|NADH-quinone oxidoreductase, subunit D|NADH:ubiquinone oxidoreductase, 30kDa subunit|NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site|NiFe hydrogenase-like GO:0008137|GO:0016651|GO:0030964|GO:0048038|GO:0050136|GO:0051287|GO:0055114 G3DSA:1.10.645.10|MF_01357|MF_01358|MF_01359|PD001581|PF00329|PF00346|PS00535|SSF143243|SSF56762|TIGR01961|TIGR01962 NJ56_RS11690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002023|IPR012336 NADH-quinone oxidoreductase subunit E-like|Thioredoxin-like fold GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF01257|PIRSF000216|PS01099|SSF52833|TIGR01958 NJ56_RS11695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001949|IPR011537|IPR011538|IPR019575 NADH ubiquinone oxidoreductase, F subunit|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain|NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 PF01512|PF10589|PS00644|PS00645|SM00928|SSF140490|SSF142019|SSF142984|TIGR01959 NJ56_RS11700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000283|IPR001041|IPR006656|IPR006657|IPR006963|IPR009010|IPR010228|IPR012675|IPR019574 2Fe-2S ferredoxin-type iron-sulfur binding domain|Aspartate decarboxylase-like domain|Beta-grasp domain|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site|NADH:ubiquinone oxidoreductase, subunit G|NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0008137|GO:0009055|GO:0016020|GO:0016491|GO:0016651|GO:0030151|GO:0042773|GO:0051536|GO:0055114 G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.10.20.30|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PF10588|PF13510|PS00641|PS00642|PS00643|SM00926|SM00929|SSF50692|SSF53706|SSF54292|SSF54862|TIGR01973 NJ56_RS11705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001694|IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site|NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 MF_01350|PF00146|PS00667|PS00668 NJ56_RS11710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010226|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 G3DSA:3.30.70.20|MF_01351|PF12838|PS00198|SSF54862|TIGR01971 NJ56_RS11715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 PF00499 NJ56_RS11720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 MF_01456|PF00420 NJ56_RS11725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001516|IPR001750|IPR003945|IPR018393 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal|NADH-plastoquinone oxidoreductase, chain 5|NADH-plastoquinone oxidoreductase, chain 5 subgroup|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit GO:0008137|GO:0042773|GO:0055114 PF00361|PF00662|PR01434|PR01435|TIGR01974 NJ56_RS11730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001750|IPR003918|IPR010227 NADH-quinone oxidoreductase, chain M/4|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PF00361|PR01437|TIGR01972 NJ56_RS11735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001750|IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit GO:0008137|GO:0042773|GO:0055114 MF_00445|PF00361|TIGR01770 NJ56_RS11740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009476 Protein of unknown function DUF1097 PF06496 NJ56_RS11745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010279 Protein of unknown function DUF883, ElaB PF05957 NJ56_RS11750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004561|IPR005801|IPR015890|IPR034681 ADC synthase|Chorismate-utilising enzyme, C-terminal|Isochorismate synthase|Isochorismate synthase MenF GO:0008909|GO:0009058|GO:0009234 G3DSA:3.60.120.10|MF_01935|PF00425|SSF56322|TIGR00543 NJ56_RS11755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004433|IPR011766|IPR012001|IPR029035|IPR029061|IPR032264 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase|DHS-like NAD/FAD-binding domain|Menaquinone biosynthesis protein MenD, middle domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0003824|GO:0009234|GO:0030976|GO:0070204 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|MF_01659|PF02775|PF02776|PF16582|PIRSF004983|SSF52467|SSF52518|TIGR00173 NJ56_RS11760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000073|IPR022485|IPR029058 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase|Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 GO:0009234|GO:0070205 G3DSA:3.40.50.1820|MF_01660|PF00561|SSF53474|TIGR03695 NJ56_RS11765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001753|IPR010198|IPR014748|IPR018376|IPR029045 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB|ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152|GO:0008935|GO:0009234 G3DSA:1.10.12.10|G3DSA:3.90.226.10|MF_01934|PF00378|PS00166|SSF52096|TIGR01929 NJ56_RS11770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010196|IPR013342|IPR029017|IPR029065 Enolase C-terminal domain-like|Enolase N-terminal domain-like|Mandelate racemase/muconate lactonizing enzyme, C-terminal|o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 G3DSA:3.20.20.120|G3DSA:3.30.390.10|MF_00470|PF13378|SM00922|SSF51604|SSF54826|TIGR01927 NJ56_RS11775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR010192|IPR020845|IPR025110 2-succinylbenzoate--CoA ligase|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824|GO:0005524|GO:0008152|GO:0008756|GO:0009234 G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|SSF56801|TIGR01923 NJ56_RS11780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002226|IPR010582|IPR011614|IPR018028|IPR020835|IPR024708|IPR024711 Catalase active site|Catalase core domain|Catalase haem-binding site|Catalase immune-responsive domain|Catalase, mono-functional, haem-containing|Catalase, mono-functional, haem-containing, clades 1 and 3|Catalase-like domain GO:0004096|GO:0006979|GO:0020037|GO:0055114 G3DSA:2.40.180.10|PF00199|PF06628|PIRSF038928|PR00067|PS00437|PS00438|SM01060|SSF56634 NJ56_RS11785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009998|IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel|YfaZ GO:0016021 G3DSA:2.40.160.10|PF07437|SSF56925 NJ56_RS11790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013059|IPR013061|IPR018227 Amino acid/polyamine transporter 2|Tryptophan/tryrosine permease, conserved site|Tryptophan/tyrosine transporter GO:0003333|GO:0005887|GO:0015173|GO:0015801 PF03222|PR00166|PS00594|TIGR00837 NJ56_RS11795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025686 Glucosyl transferase II PF14264 NJ56_RS11800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 NJ56_RS11805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007267|IPR016480 Glucose translocase, bactoprenol-linked|GtrA-like protein GO:0000271|GO:0006810|GO:0016021 PF04138|PIRSF006298 NJ56_RS11810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001453|IPR008135|IPR008136 CinA, C-terminal|Competence-induced protein CinA|MoaB/Mog domain G3DSA:3.40.980.10|G3DSA:3.90.950.20|MF_00226_B|PF00994|PIRSF006728|SM00852|SSF142433|SSF53218|TIGR00177|TIGR00200 NJ56_RS11815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005658|IPR023084|IPR023189|IPR027438 Ecotin, C-terminal|Proteinase inhibitor I11, ecotin|Proteinase inhibitor I11, ecotin domain|Proteinase inhibitor I11, ecotin, gammaproteobacteria G3DSA:2.60.40.550|G3DSA:4.10.1230.10|MF_00706|PF03974|PIRSF006865|SSF49772 NJ56_RS11820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008936 Rho GTPase activation protein GO:0007165 G3DSA:1.10.555.10|SSF48350 NJ56_RS11825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001041|IPR006058|IPR012675 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain GO:0009055|GO:0051536|GO:0051537 G3DSA:3.10.20.30|PF00111|PS00197|SSF54292 NJ56_RS11830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000358|IPR009078|IPR030475 Ferritin-like superfamily|Ribonucleotide reductase small subunit family|Ribonucleotide reductase small subunit, acitve site GO:0055114 G3DSA:1.10.620.20|PF00268|PS00368|SSF47240 NJ56_RS11835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000788|IPR005144|IPR008926|IPR013346|IPR013509 ATP-cone domain|Ribonucleotide reductase R1 subunit, N-terminal|Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase large subunit, N-terminal|Ribonucleotide reductase, class I , alpha subunit GO:0004748|GO:0005524|GO:0006260|GO:0055114 G3DSA:3.20.70.20|PF00317|PF02867|PF03477|PR01183|PS00089|SSF48168|SSF51998|TIGR02506 NJ56_RS11840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010233|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 G3DSA:3.40.50.150|MF_00472|PF13489|SSF53335|TIGR01983 NJ56_RS11845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002205|IPR005743|IPR006691|IPR013757|IPR013758|IPR013760|IPR035516 DNA gyrase, subunit A|DNA gyrase/topoisomerase IV, subunit A, C-terminal|DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain|Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265 G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.90.199.10|MF_01897|PF00521|PF03989|SM00434|SSF101904|SSF56719|TIGR01063 NJ56_RS11850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR003594|IPR003661|IPR004358|IPR011006|IPR019017|IPR030856 CheY-like superfamily|Histidine kinase-like ATPase, C-terminal domain|Sensor histidine kinase RcsC|Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0005524|GO:0005886|GO:0006355|GO:0007165|GO:0016021|GO:0016310|GO:0016772|GO:0018106|GO:0042710 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|MF_00979|PF00072|PF00512|PF02518|PF09456|PR00344|SM00387|SM00388|SM00448|SSF47384|SSF52172|SSF55874 NJ56_RS11855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR001789|IPR011006|IPR011991|IPR016032|IPR030864 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Transcriptional regulatory protein RcsB|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|MF_00981|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 NJ56_RS11860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003661|IPR008207|IPR030861|IPR032306 Histidine kinase-like ATPase, C-terminal domain|Phosphotransferase RcsD|Phosphotransferase RcsD, RcsD-ABL domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000155|GO:0000160|GO:0004871|GO:0005887|GO:0007165|GO:0009927 G3DSA:1.20.120.160|G3DSA:3.30.565.10|MF_00980|PF01627|PF02518|PF16359|SM00387|SM00388|SSF47226|SSF47384|SSF55874 NJ56_RS11865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS11870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001702|IPR001897|IPR013793 Porin, Gram-negative type|Porin, Gram-negative type, conserved site|Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 G3DSA:2.40.160.10|PF00267|PR00182|PR00183|PS00576|SSF56935 NJ56_RS11885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF13302|SSF55729 NJ56_RS11890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001466|IPR012338 Beta-lactamase-related|Beta-lactamase/transpeptidase-like G3DSA:3.40.710.10|PF00144|SSF56601 NJ56_RS11895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001279|IPR024884 Metallo-beta-lactamase|N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 G3DSA:3.60.15.10|PF12706|PIRSF038896|SSF56281 NJ56_RS11900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010391 DNA damage-inducible protein DinI-like G3DSA:3.30.910.10|PF06183|SSF54857 NJ56_RS11910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR015073 Atu1913-like G3DSA:4.10.1210.10|PF08980|SSF141099 NJ56_RS11915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011010|IPR013762|IPR015094|IPR023109 DNA breaking-rejoining enzyme, catalytic core|Integrase, lambda-type, N-terminal DNA-binding|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0008907|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.60|PF09003|SSF56349 NJ56_RS11920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:1.10.1660.20 NJ56_RS11925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012337|IPR033390 3'-5' exoribonuclease Rv2179c-like domain|Ribonuclease H-like domain GO:0003676 G3DSA:3.30.420.10|PF16473|SSF53098 NJ56_RS11935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:1.10.3210.10|SSF109604 NJ56_RS11940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019276 Protein of unkown function DUF2303 PF10065 NJ56_RS11960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982|IPR015927|IPR027910 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain|Peptidase S24/S26A/S26B/S26C|YdiL-like domain GO:0003677|GO:0043565 G3DSA:1.10.3100.10|G3DSA:2.10.109.10|PF00717|PF01381|SM00530|SSF47413|SSF51306 NJ56_RS11965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 G3DSA:1.10.260.40|PF14549|SSF47413 NJ56_RS11980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025317 Protein of unknown function DUF4222 PF13973 NJ56_RS11985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011991 Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|PF13730 NJ56_RS11990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008593 DNA N-6-adenine-methyltransferase GO:0003677|GO:0009007|GO:0032775 PF05869|TIGR01712 NJ56_RS11995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008822|IPR016281 Crossover junction endodeoxyribonuclease, RusA|Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310|GO:0008821 G3DSA:3.30.1330.70|PF05866|PIRSF001007|SSF103084 NJ56_RS12000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005039|IPR014054 Antirepressor protein, C-terminal|Bacteriophage regulatory protein, Rha family GO:0003677 PF03374|PF09669 NJ56_RS12005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding PF04383|SM01252 NJ56_RS12010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003615|IPR010373 HNH nuclease|Protein of unknown function DUF968 G3DSA:3.30.50.20|PF06147|SM00507 NJ56_RS12015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001305|IPR003222 Antitermination protein|Heat shock protein DnaJ, cysteine-rich domain GO:0003677|GO:0006355|GO:0031072|GO:0051082 G3DSA:2.10.230.10|PF03589|SSF57938 NJ56_RS12020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001091|IPR002052|IPR002941|IPR029063 DNA methylase N-4/N-6|DNA methylase, N-6 adenine-specific, conserved site|Restriction/modification DNA-methylase|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0003677|GO:0006306|GO:0008168|GO:0008170|GO:0032259 G3DSA:3.40.50.150|PF01555|PR00508|PS00092|SSF53335 NJ56_RS12025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF00561|SSF53474 NJ56_RS12035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006481 Bacteriophage lambda, GpS, holin PF05106|TIGR01594 NJ56_RS12040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000726|IPR023346 Glycoside hydrolase, family 19, catalytic|Lysozyme-like domain GO:0004568|GO:0006032|GO:0016998 G3DSA:3.30.20.10|PF00182|SSF53955 NJ56_RS12045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022538 Protein of unknown function DUF2570 PF10828 NJ56_RS12055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014054 Bacteriophage regulatory protein, Rha family PF09669|TIGR02681 NJ56_RS12060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002711|IPR003615 HNH endonuclease|HNH nuclease GO:0003676|GO:0004519 G3DSA:3.40.1800.10|PF01844|SM00507 NJ56_RS12065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006448 Putative phage terminase, small subunit, P27 family PF05119 NJ56_RS12070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005021 Terminase large subunit, Lambdalikevirus-type PF03354 NJ56_RS12075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006427|IPR006944 Bacteriophage/Gene transfer agent portal protein|Phage portal protein, HK97 PF04860|TIGR01537 NJ56_RS12080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006433|IPR035443 Herpesvirus/Caudovirus protease domain|Prohead protease G3DSA:3.20.16.10|PF04586|TIGR01543 NJ56_RS12085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024455 Phage capsid G3DSA:3.30.2400.10|PF05065|SSF56563|TIGR01554 NJ56_RS12090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006450|IPR021146 Phage gp6-like head-tail connector protein|Phage protein of unkonwn function G3DSA:1.10.3230.10|PF05135|TIGR01560 NJ56_RS12095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008767 Bacteriophage SPP1, head-tail adaptor PF05521|TIGR01563 NJ56_RS12105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:3.30.2000.10 NJ56_RS12110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024400 Protein of unknown function DUF2635 PD027295|PF10948 NJ56_RS12115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007067|IPR020287|IPR035089 Tail sheath protein|Tail sheath protein, C-terminal domain|Tail sheath protein, subtilisin-like domain PF04984|PF17482|PIRSF007349 NJ56_RS12120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019596 Bacteriophage Mu, GpM, tail tube PF10618 NJ56_RS12125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019289 Bacteriophage tail protein Gp41, putative PF10109 NJ56_RS12130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010090 Phage tail tape measure protein PF10145|TIGR01760 NJ56_RS12140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009826 DNA circulation, N-terminal PD332323|PF07157 NJ56_RS12145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026276 Baseplate protein GpP G3DSA:2.30.300.10|PIRSF004440|SSF69279 NJ56_RS12150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013046|IPR014462 Phage baseplate assembly protein V/Gp45|Phage-associated protein Gp45 PF06890|PIRSF012337|TIGR01644 NJ56_RS12155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010877 Bacteriophage Mu, Gp46 PF07409 NJ56_RS12160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006949 Baseplate protein J-like PF04865 NJ56_RS12165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018755 Bacteriophage Mu-like, Gp48 PF10076 NJ56_RS12170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 G3DSA:2.10.280.10|PF03406 NJ56_RS12175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003458 Bacteriophage T4, Gp38, tail fibre assembly PF02413 NJ56_RS12195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000917|IPR012159|IPR017849|IPR017850|IPR024588 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Inner membrane protein YejM|Inner membrane protein YejM, N-terminal|Sulfatase, N-terminal GO:0003824|GO:0008152|GO:0008484 G3DSA:3.40.720.10|PF00884|PF11893|PIRSF004950|SSF53649 NJ56_RS12200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009857|IPR023202 Uncharacterised protein family UPF0352|YejL-like domain G3DSA:1.10.3390.10|MF_00816|PD027794|PF07208|PIRSF006188|SSF158651 NJ56_RS12205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007358 Nucleoid-associated protein NdpA GO:0009295 MF_00730|PF04245 NJ56_RS12210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011035|IPR020055|IPR020056|IPR029751 Ribosomal protein L25|Ribosomal protein L25, short-form|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain|Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain GO:0003735|GO:0005840|GO:0006412|GO:0008097 G3DSA:2.40.240.10|MF_01336|PD012503|PF01386|SSF50715 NJ56_RS12215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001650|IPR006935|IPR011332|IPR014001|IPR027417 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Zinc-binding ribosomal protein GO:0003677|GO:0005524|GO:0006412|GO:0016787 G3DSA:3.40.50.300|PF00271|PF04851|SM00487|SM00490|SSF52540|SSF57829 NJ56_RS12220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000748|IPR002942|IPR006145|IPR018496|IPR020103 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|PS01149|SM00363|SSF55120|SSF55174|TIGR00093 NJ56_RS12225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004812|IPR011701|IPR020846 Drug resistance transporter Bcr/CmlA subfamily|Major facilitator superfamily|Major facilitator superfamily domain GO:0005215|GO:0006810|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473|TIGR00710 NJ56_RS12230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020489 Uncharacterised protein family YejG PD073777|PF13989 NJ56_RS12235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540 NJ56_RS12240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR025966 ABC transporter type 1, transmembrane domain MetI-like|Oligopeptide transport permease C-like, N-terminal domain GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 NJ56_RS12245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS12250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|SSF53850 NJ56_RS12255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001633|IPR024744 EAL domain|Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain G3DSA:3.20.20.450|PF00563|PF12792|SM00052|SSF141868 NJ56_RS12260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000064 Endopeptidase, NLPC/P60 domain G3DSA:3.90.1720.10|PF00877|SSF54001 NJ56_RS12265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000326|IPR032908 Lipid A 1-diphosphate synthase|Phosphatidic acid phosphatase type 2/haloperoxidase GO:0005886|GO:0043165|GO:0050380 G3DSA:1.20.144.10|MF_01945|PF01569|SM00014|SSF48317 NJ56_RS12270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003495|IPR011629|IPR027417 CobW/HypB/UreG, nucleotide-binding domain|Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF02492|PF07683|SM00833|SSF52540 NJ56_RS12285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000669|IPR008927|IPR013118|IPR013131|IPR013328|IPR016040|IPR023027 6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Mannitol dehydrogenase|Mannitol dehydrogenase, C-terminal|Mannitol dehydrogenase, N-terminal|Mannitol dehydrogenase, conserved site|NAD(P)-binding domain GO:0003824|GO:0008152|GO:0016491|GO:0019594|GO:0050662|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF01232|PF08125|PR00084|PS00974|SSF48179|SSF51735 NJ56_RS12295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004628|IPR013022 Mannonate dehydratase|Xylose isomerase-like, TIM barrel domain GO:0006064|GO:0008927 G3DSA:3.20.20.150|MF_00106|PF03786|PIRSF016049|SSF51658|TIGR00695 NJ56_RS12300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001059|IPR008991|IPR011897|IPR012340|IPR013185|IPR013852|IPR014722|IPR015365|IPR020599 Elongation factor P, C-terminal|Nucleic acid-binding, OB-fold|Ribosomal protein L2 domain 2|Translation elongation factor P-like, YeiP|Translation elongation factor P/YeiP|Translation elongation factor P/YeiP, central|Translation elongation factor P/YeiP, conserved site|Translation elongation factor, KOW-like|Translation protein SH3-like domain GO:0003746|GO:0005737|GO:0006414|GO:0043043 G3DSA:2.30.30.30|G3DSA:2.40.50.140|MF_00646|PF01132|PF08207|PF09285|PIRSF005901|PS01275|SM00841|SM01185|SSF50104|SSF50249|TIGR02178 NJ56_RS12305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR013059|IPR018227 Amino acid/polyamine transporter 2|Amino acid/polyamine transporter I|Tryptophan/tyrosine transporter GO:0003333|GO:0005887|GO:0015171|GO:0015173|GO:0015801|GO:0016020 PF03222|PIRSF006060|PR00166|TIGR00837 NJ56_RS12315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006655|IPR006656|IPR006657|IPR006658|IPR009010 Aspartate decarboxylase-like domain|Molybdopterin dinucleotide-binding domain|Molybdopterin guanine dinucleotide-containing S/N-oxide reductase|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0030151|GO:0055114 G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.90.55.10|PF00384|PF01568|PS00490|SSF50692|SSF53706|TIGR00509 NJ56_RS12320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005126|IPR009154|IPR011031 Membrane-bound tetrahaem cytochrome TorC/YecK|Multihaem cytochrome|NapC/NirT cytochrome c, N-terminal GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 G3DSA:1.10.468.10|PF03264|PIRSF000014|SSF48695 NJ56_RS12325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR015797|IPR020084|IPR020476 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site GO:0016787 G3DSA:3.90.79.10|PF00293|PR00502|PS00893|SSF55811 NJ56_RS12330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000032|IPR001020|IPR002114|IPR002178|IPR016152 PTS EIIA type-2 domain|Phosphocarrier protein HPr-like|Phosphotransferase system, HPr histidine phosphorylation site|Phosphotransferase system, HPr serine phosphorylation site|Phosphotransferase/anion transporter GO:0005215|GO:0006810 G3DSA:3.30.1340.10|G3DSA:3.40.930.10|PF00359|PF00381|PR00107|PS00369|PS00372|PS00589|SSF55594|SSF55804|TIGR01003 NJ56_RS12335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002173|IPR011611|IPR017583|IPR022463|IPR023314|IPR029056 Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Fructose 1-phosphate kinase|Ribokinase-like|Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain|Tagatose/fructose phosphokinase GO:0005975|GO:0008662|GO:0016773 G3DSA:2.20.150.10|G3DSA:3.40.1190.20|PF00294|PIRSF000535|PS00583|PS00584|SSF53613|TIGR03168|TIGR03828 NJ56_RS12340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003352|IPR003353|IPR003501|IPR006327 Phosphotransferase system, EIIB component, type 2/3|Phosphotransferase system, EIIC|Phosphotransferase system, fructose IIC component|Phosphotransferase system, fructose-specific IIB subunit GO:0005351|GO:0008982|GO:0009401|GO:0016020|GO:0016021|GO:0022877 G3DSA:3.40.50.2300|PF02302|PF02378|SSF52794|TIGR00829|TIGR01427 NJ56_RS12345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001719|IPR013022|IPR018246 AP endonuclease 2|AP endonuclease 2, zinc binding site|Xylose isomerase-like, TIM barrel domain GO:0003677|GO:0006281|GO:0008270 G3DSA:3.20.20.150|MF_00152|PF01261|PS00729|PS00730|PS00731|SM00518|SSF51658|TIGR00587 NJ56_RS12350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004630|IPR018383 Uncharacterised protein family UPF0324, bacteria|Uncharacterised protein family UPF0324, prokaryote GO:0016021 PF03601|TIGR00698 NJ56_RS12365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS12370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0003333|GO:0006810|GO:0006865|GO:0015171|GO:0016020|GO:0016021|GO:0055085 PF00324|PIRSF006060|PS00218 NJ56_RS12375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002491 ABC transporter periplasmic binding domain GO:0005488 G3DSA:3.40.50.1980|PF01497|SSF53807 NJ56_RS12380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000522|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD-like|ABC transporter, FecCD/TroCD-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 NJ56_RS12385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS12390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000531|IPR010916|IPR012910 TonB box, conserved site|TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PS00430|SSF56935 NJ56_RS12400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PF13520|PIRSF006060 NJ56_RS12405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012337|IPR013520|IPR013620|IPR023607 Exodeoxyribonuclease I|Exodeoxyribonuclease I, C-terminal|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H-like domain GO:0003676|GO:0004529|GO:0006281|GO:0008852 G3DSA:3.30.420.10|PF00929|PF08411|PIRSF000977|SM00479|SSF53098 NJ56_RS12410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013120|IPR016040 Male sterility, NAD-binding|NAD(P)-binding domain G3DSA:3.40.50.720|PF07993|SSF51735 NJ56_RS12415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 PF04632 NJ56_RS12420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007458 Protein of unknown function DUF496 MF_00683|PD030876|PF04363|PIRSF028773 NJ56_RS12430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 G3DSA:3.40.50.10140|SSF52200 NJ56_RS12435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629|GO:0008152 G3DSA:3.40.1090.10|PF01734|SSF52151 NJ56_RS12440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR015032 MTH538 TIR-like domain G3DSA:3.40.50.9200|PF08937 NJ56_RS12445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 G3DSA:3.40.50.10140|PF13676|SSF52200 NJ56_RS12465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR015032 MTH538 TIR-like domain G3DSA:3.40.50.9200|PF08937|SSF52206 NJ56_RS12475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 NJ56_RS12480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain G3DSA:3.30.572.10|PF00303|SSF55831 NJ56_RS12490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013610|IPR017113 Antirestriction, ArdC|Domain of unknown function DUF1738 PF08401|PIRSF037112 NJ56_RS12500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016387|IPR027417|IPR032689 Mobilization, MobA|P-loop containing nucleoside triphosphate hydrolase|TraD/TraG, TraM recognition site G3DSA:3.40.50.300|PF12696|PIRSF003273|SSF52540 NJ56_RS12510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001482|IPR014155|IPR025662|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Sigma-54 interaction domain, ATP-binding site 1|Type II secretion system protein E|Type IV secretion system protein VirB11 GO:0005524|GO:0005737|GO:0006810|GO:0009405 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00675|SSF52540|TIGR02788 NJ56_RS12515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI PF03743 NJ56_RS12520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010258|IPR014148 Conjugal transfer, TrbG/VirB9/CagX|P-type conjugative transfer protein VirB9 PF03524|TIGR02781 NJ56_RS12525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007430|IPR026264|IPR032710 Bacterial virulence protein VirB8|NTF2-like domain|Type IV secretion system protein VirB8/PtlE GO:0016020|GO:0030255 PF04335|PIRSF003299|SSF54427 NJ56_RS12530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 PF04610 NJ56_RS12540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014158|IPR023220 Type IV secretion system, VirB5|Type IV secretion system, VirB5-domain G3DSA:1.20.58.430|PF07996|SSF101082 NJ56_RS12545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007792|IPR018145|IPR027417 CagE, TrbE, VirB component of type IV transporter system, central domain|P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system, VirB3 / TrbD / AvhB GO:0005524 G3DSA:3.40.50.300|PF03135|PF05101|SSF52540 NJ56_RS12550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 PF04956 NJ56_RS12555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000962|IPR012783 Zinc finger, C4 DksA/TraR-type|Zinc finger, DksA/TraR C4-type GO:0008270 PF01258|SSF57716|TIGR02419 NJ56_RS12560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021364 Protein of unknown function DUF2857 G3DSA:1.10.4000.10|PF11198 NJ56_RS12565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010260 DNA-binding transcriptional activator AlpA PF05930 NJ56_RS12575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018306|IPR025280 Bacteriophage T5, Orf172 DNA-binding|Domain of unknown function DUF4041 G3DSA:3.40.50.300|PF10544|PF13250|SM00974 NJ56_RS12580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 G3DSA:1.10.260.40|PF13693|SSF47413 NJ56_RS12585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982|IPR027910 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain|YdiL-like domain GO:0003677|GO:0043565 G3DSA:1.10.3100.10|SM00530|SSF47413 NJ56_RS12590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain GO:0003677|GO:0043565 G3DSA:1.10.260.40|SM00530|SSF47413 NJ56_RS12595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762|IPR023109|IPR025166 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13356|SSF56349 NJ56_RS12605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000595|IPR011991|IPR012318|IPR014710|IPR018490 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 NJ56_RS12610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0016887|GO:0043190 G3DSA:2.40.50.100|G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 NJ56_RS12615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS12620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026045 Ferric binding protein G3DSA:3.40.190.10|PF13343|PIRSF002825|SSF53850 NJ56_RS12625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000849|IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain|Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PIRSF002808|SSF103473 NJ56_RS12630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR007895|IPR011712 Histidine kinase-like ATPase, C-terminal domain|MASE1|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 G3DSA:3.30.565.10|PF02518|PF05231|PF07730|SM00387|SSF55874 NJ56_RS12635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR001789|IPR011006|IPR011991|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 NJ56_RS12640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR011006|IPR024187|IPR028141 CheY-like superfamily|Signal transduction response regulator, citrate/malate metabolism|Signal transduction response regulator, receiver domain|Transcriptional regulator GO:0000160|GO:0001071|GO:0003677|GO:0005737|GO:0009605 G3DSA:1.10.10.60|G3DSA:3.40.50.2300|PF00072|PF12431|PIRSF006171|SM00448|SSF52172 NJ56_RS12645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR003594|IPR004358|IPR016120|IPR029151|IPR033463 Histidine kinase-like ATPase, C-terminal domain|PAS domain|Periplasmic sensor domain-like|Signal transduction histidine kinase, sporulation regulator SpoOB|Signal transduction histidine kinase-related protein, C-terminal|Single cache domain 3 GO:0000155|GO:0000160|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF02518|PF17203|PR00344|SM00091|SM00387|SSF103190|SSF55785|SSF55874|SSF55890 NJ56_RS12650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004821|IPR005216|IPR013166|IPR014729|IPR016181 Acyl-CoA N-acyltransferase|Citrate lyase ligase|Citrate lyase ligase, C-terminal|Cytidyltransferase-like domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0008771|GO:0009058 G3DSA:3.40.50.620|G3DSA:3.40.630.30|PD016147|PF08218|PIRSF005751|SM00764|SSF52374|SSF55729|TIGR00124|TIGR00125 NJ56_RS12655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006495|IPR023439 Citrate lyase acyl carrier protein CitD|Malonate decarboxylase/citrate lyase acyl carrier protein GO:0005737 MF_00805|PD015389|PF06857|PIRSF002736|TIGR01608 NJ56_RS12660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005000|IPR011206|IPR015813 Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 G3DSA:3.20.20.360|PF03328|PIRSF015582|SSF51621 NJ56_RS12665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 G3DSA:3.40.1080.10|PF04223|PIRSF009451|SSF100950|TIGR01584 NJ56_RS12670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 PF03802|TIGR03124 NJ56_RS12675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002736|IPR017551 Triphosphoribosyl-dephospho-CoA protein|Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MF_00397|PF01874|TIGR03125 NJ56_RS12680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001898|IPR030676 Citrate carrier CitT-related|Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 PF00939|PIRSF002457|TIGR00785 NJ56_RS12685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003542|IPR008278 4'-phosphopantetheinyl transferase superfamily|Enterobactin synthetase-like, component D GO:0000287|GO:0008897|GO:0009239|GO:0009366|GO:0016780 G3DSA:3.90.470.20|PF01648|PR01399|SSF56214 NJ56_RS12700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010384|IPR024079 Metallopeptidase, catalytic domain|MtfA family GO:0008237 G3DSA:3.40.390.10|MF_01593|PF06167|SSF55486 NJ56_RS12710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017704 Putative selenium-binding protein YdfZ PF14001|TIGR03318 NJ56_RS12715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021266 Kdo hydroxylase PF11004 NJ56_RS12720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019713 Inner membrane protein YlaC PF10777 NJ56_RS12725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011032|IPR013149|IPR013154|IPR014189|IPR016040|IPR020843 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase PIG3 GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735|TIGR02824 NJ56_RS12730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004199|IPR006101|IPR006102|IPR006103|IPR006104|IPR008979|IPR011013|IPR013783|IPR014718|IPR017853|IPR023230|IPR023232|IPR023933|IPR032312 Beta galactosidase small chain/ domain 5|Beta-galactosidase, domain 4|Galactose mutarotase-like domain|Galactose-binding domain-like|Glycoside hydrolase family 2, catalytic domain|Glycoside hydrolase superfamily|Glycoside hydrolase, family 2|Glycoside hydrolase, family 2, active site|Glycoside hydrolase, family 2, beta-galactosidase|Glycoside hydrolase, family 2, conserved site|Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich|Glycoside hydrolase-type carbohydrate-binding|Glycosyl hydrolases family 2, sugar binding domain|Immunoglobulin-like fold GO:0003824|GO:0004553|GO:0004565|GO:0005975|GO:0009341|GO:0016798|GO:0030246 G3DSA:2.60.120.260|G3DSA:2.60.40.10|G3DSA:2.70.98.10|G3DSA:3.20.20.80|MF_01687|PF00703|PF02836|PF02837|PF02929|PF16353|PR00132|PS00608|PS00719|SM01038|SSF49303|SSF49785|SSF51445|SSF74650 NJ56_RS12735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.10.60|G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PR00036|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS12745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 NJ56_RS12750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019717 Dextransucrase DSRB MF_01549|PF10781 NJ56_RS12755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003122|IPR003660|IPR004089|IPR004090|IPR004091|IPR035440 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|Chemotaxis methyl-accepting receptor, methyl-accepting site|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|Methyl-accepting chemotaxis protein, four helix bundle domain GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.1060|G3DSA:1.10.287.950|G3DSA:1.20.120.30|PF00015|PF00672|PF02203|PR00260|PS00538|SM00283|SM00304|SSF47170|SSF58104 NJ56_RS12760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PF02308|PR01837 NJ56_RS12770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA GO:0006950 G3DSA:3.40.50.620|PF00582|PIRSF006276|SSF52402 NJ56_RS12780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 G3DSA:1.10.4000.10|MF_00725|PD015582|PF05247|SSF63592 NJ56_RS12785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 MF_01891|PD016592|PF05280|PIRSF003159|SSF160930 NJ56_RS12790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000540|IPR002898|IPR022522 Flagellar motor protein MotA, conserved site|Flagellar motor stator, MotA|MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PF01618|PS01307|TIGR03818 NJ56_RS12795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006665|IPR025713 Motility protein B, N-terminal domain|OmpA-like domain G3DSA:3.30.1330.60|PF00691|PF13677|SSF103088 NJ56_RS12800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002545|IPR003594|IPR003661|IPR004105|IPR004358|IPR008207|IPR015162 CheW-like domain|CheY binding|Histidine kinase CheA-like, homodimeric domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0005737|GO:0006935|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.560|G3DSA:1.20.120.160|G3DSA:2.30.30.40|G3DSA:2.40.50.180|G3DSA:3.30.565.10|G3DSA:3.30.70.400|PF01584|PF01627|PF02518|PF02895|PF09078|PR00344|SM00073|SM00260|SM00387|SM01231|SSF47226|SSF47384|SSF50341|SSF55052|SSF55874 NJ56_RS12805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 G3DSA:2.30.30.40|G3DSA:2.40.50.180|PF01584|SM00260|SSF50341 NJ56_RS12810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003122|IPR003660|IPR004089|IPR004090|IPR004091|IPR035440 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|Chemotaxis methyl-accepting receptor, methyl-accepting site|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|Methyl-accepting chemotaxis protein, four helix bundle domain GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.1060|G3DSA:1.10.287.950|G3DSA:1.20.120.30|PF00015|PF00672|PF02203|PR00260|PS00538|SM00283|SM00304|SM00319|SSF47170|SSF58104 NJ56_RS12815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003122|IPR003660|IPR004089|IPR004090|IPR004091|IPR035440 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|Chemotaxis methyl-accepting receptor, methyl-accepting site|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|Methyl-accepting chemotaxis protein, four helix bundle domain GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.1060|G3DSA:1.10.287.950|G3DSA:1.20.120.30|PF00015|PF00672|PF02203|PR00260|PS00538|SM00283|SM00304|SM00319|SSF47170|SSF58104 NJ56_RS12820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000780|IPR022641|IPR022642|IPR026024|IPR029063 Chemotaxis protein methyltransferase CheR|Chemotaxis receptor methyltransferase CheR, N-terminal|MCP methyltransferase, CheR-type|MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal|S-adenosyl-L-methionine-dependent methyltransferase GO:0008757 G3DSA:1.10.155.10|G3DSA:3.40.50.150|PF01739|PF03705|PIRSF000410|PR00996|SM00138|SSF47757|SSF53335 NJ56_RS12825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000673|IPR001789|IPR008248|IPR011006 CheY-like superfamily|Signal transduction response regulator, chemotaxis, CheB|Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase|Signal transduction response regulator, receiver domain GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 G3DSA:3.40.50.180|G3DSA:3.40.50.2300|MF_00099|PF00072|PF01339|PIRSF000876|SM00448|SSF52172|SSF52738 NJ56_RS12830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.2300|PF00072|SM00448|SSF52172 NJ56_RS12835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 G3DSA:1.10.287.500|G3DSA:1.20.5.590|PF04344|PIRSF002884|SSF75708 NJ56_RS12845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SM00862|SSF46894 NJ56_RS12850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SM00862|SSF46894 NJ56_RS12860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS12865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS12870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS12875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001829|IPR008962|IPR013783|IPR016147|IPR016148 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, C-terminal|Pili assembly chaperone, N-terminal|Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077|GO:0071555 G3DSA:2.60.40.10|PF00345|PF02753|PR00969|SSF49354|SSF49584 NJ56_RS12880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR018030|IPR025885|IPR025949 Fimbrial membrane usher, conserved site|Outer membrane usher protein|PapC, N-terminal domain|PapC-like, C-terminal domain GO:0005215|GO:0005515|GO:0006810|GO:0016020 PF00577|PF13953|PF13954|PS01151|SSF141729 NJ56_RS12890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000259|IPR008966 Adhesion domain|Fimbrial-type adhesion domain GO:0007155|GO:0009289 G3DSA:2.60.40.1090|PF00419|SSF49401 NJ56_RS12895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007016|IPR021797|IPR031726 O-antigen ligase-related|Protein glycosylation ligase domain|Virulence factor membrane-bound polymerase, C-terminal PF04932|PF11846|PF15864 NJ56_RS12900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR011991|IPR016032 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00196|SM00421|SSF46894 NJ56_RS12905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000209|IPR015500|IPR022398|IPR023827|IPR023828 Peptidase S8, subtilisin, Asp-active site|Peptidase S8, subtilisin, His-active site|Peptidase S8, subtilisin, Ser-active site|Peptidase S8, subtilisin-related|Peptidase S8/S53 domain GO:0004252|GO:0006508 G3DSA:3.40.50.200|PF00082|PR00723|PS00136|PS00137|PS00138|SSF52743 NJ56_RS12910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006135|IPR006136|IPR029025 Flagellar biosynthetic protein FlhB|Type III secretion system substrate exporter|Type III secretion system substrate exporter, C-terminal GO:0009306|GO:0015031|GO:0016020|GO:0016021|GO:0044780 G3DSA:3.40.1690.10|PF01312|PR00950|SSF160544|TIGR00328 NJ56_RS12915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001712|IPR006301|IPR025505 FHIPEP conserved site|Flagellar biosynthesis protein FlhA|Type III secretion system FHIPEP GO:0009306|GO:0016020|GO:0016021|GO:0044780 PF00771|PIRSF005419|PR00949|PS00994|TIGR01398 NJ56_RS12920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009420 Flagellar protein FlhE PF06366 NJ56_RS12925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007809 FlgN-like protein GO:0005515|GO:0044780 G3DSA:1.20.58.300|PF05130|SSF140566 NJ56_RS12930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007412|IPR031316 Anti-sigma-28 factor FlgM, C-terminal|Anti-sigma-28 factor, FlgM GO:0045892 G3DSA:1.10.287.1160|PF04316|SSF101498|TIGR03824 NJ56_RS12935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013974|IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal|SAF domain G3DSA:3.90.1210.10|PF13144|SM00858|TIGR03170 NJ56_RS12940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001444|IPR006300|IPR019776 Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 PF00460|PIRSF002889|PS00588|TIGR01396 NJ56_RS12945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001444|IPR006299|IPR010930|IPR019776 Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod protein FlgC|Flagellar basal-body/hook protein, C-terminal domain GO:0030694|GO:0071973 PF00460|PF06429|PS00588|TIGR01395 NJ56_RS12950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005648|IPR025963|IPR025965 Flagellar hook capping protein|FlgD Ig-like domain|FlgD Tudor-like domain PF03963|PF13860|PF13861 NJ56_RS12955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001444|IPR010930|IPR011491|IPR019776|IPR020013 Fagellar hook-basal body protein, FlgE/F/G|Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook protein FlgE GO:0071973 G3DSA:2.60.98.20|PF00460|PF06429|PF07559|PS00588|SSF117143|TIGR03506 NJ56_RS12960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001444|IPR010930|IPR020013 Fagellar hook-basal body protein, FlgE/F/G|Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain GO:0071973 PF00460|PF06429|SSF117143|TIGR03506 NJ56_RS12965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001444|IPR010930|IPR012834|IPR019776|IPR020013 Fagellar hook-basal body protein, FlgE/F/G|Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod FlgG|Flagellar basal-body/hook protein, C-terminal domain GO:0009426|GO:0071973 PF00460|PF06429|PS00588|SSF117143|TIGR02488|TIGR03506 NJ56_RS12970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 MF_00415|PF02107|PR01008 NJ56_RS12975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 MF_00416|PF02119|PR01010 NJ56_RS12980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002901|IPR013377|IPR019301 Flagellar protein FlgJ, N-terminal|Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain|Peptidoglycan hydrolase FlgJ GO:0004040|GO:0016798|GO:0044780 G3DSA:1.10.530.10|PF01832|PF10135|PR01002|SM00047|TIGR02541 NJ56_RS12985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001444|IPR002371|IPR010930 Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780|GO:0071973 G3DSA:1.20.1170.10|PF00460|PF06429|PR01005|SSF64518|TIGR02492 NJ56_RS12990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001029|IPR013384 Flagellar hook-associated protein 3|Flagellin, D0/D1 domain GO:0005198|GO:0009424|GO:0071973 G3DSA:1.20.1330.10|PF00669|SSF64518|TIGR02550 NJ56_RS12995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002010|IPR006303 Flagellar biosynthesis protein FliR|Type III secretion system inner membrane R protein GO:0006605|GO:0016020|GO:0016021|GO:0044780 PF01311|PR00953|TIGR01400 NJ56_RS13000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002191|IPR006305 Bacterial export protein family 3|Flagellar biosynthesis protein FliQ GO:0009306|GO:0016020|GO:0016021|GO:0044780 PF01313|PIRSF004669|PR00952|TIGR01402 NJ56_RS13005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005837|IPR005838 Flagellar transport protein FliP|Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PF00813|PR00951|PR01302|PS01060|PS01061|TIGR01103 NJ56_RS13010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 PF04347|TIGR03500 NJ56_RS13015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001172|IPR001543|IPR012826|IPR031576 Flagellar motor switch FliN|Flagellar motor switch FliN/Type III secretion HrcQb|Flagellar motor switch protein FliN, N-terminal|Surface presentation of antigen (SpoA) GO:0003774|GO:0006935|GO:0009288|GO:0009425|GO:0016020|GO:0071973 G3DSA:2.30.330.10|PF01052|PF16973|PR00956|SSF101801|TIGR02480 NJ56_RS13020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001543|IPR001689|IPR028976 CheC-like domain|Flagellar motor switch protein FliM|Surface presentation of antigen (SpoA) GO:0003774|GO:0009425|GO:0071973 G3DSA:2.30.330.10|G3DSA:3.40.1550.10|PF01052|PF02154|PIRSF002888|PR00955|SSF101801|SSF103039|TIGR01397 NJ56_RS13025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 PF03748 NJ56_RS13035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001635|IPR021136 Flagellar hook-length control protein FliK|Flagellar hook-length control protein-like, C-terminal GO:0009424|GO:0044780 PF02120|PR01007 NJ56_RS13040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012823|IPR018006 Flagellar FliJ, proteobacteria|Flagellar export FliJ GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PF02050|PIRSF019404|PR01004|TIGR02473 NJ56_RS13045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000194|IPR003593|IPR005714|IPR020003|IPR020005|IPR027417 AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|ATPase, type III secretion system, FliI/YscN|Flagellar export ATPase FliI, clade 1|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257|GO:0044780|GO:0071973 G3DSA:3.40.50.300|PF00006|PS00152|SM00382|SSF52540|TIGR01026|TIGR03496 NJ56_RS13050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000563|IPR018035 Flagellar assembly protein FliH|Flagellar assembly protein FliH/Type III secretion system HrpE GO:0003774|GO:0009288|GO:0071973 PF02108|PR01003 NJ56_RS13055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000090|IPR011002|IPR023087|IPR028263|IPR032779 Flagellar motor switch protein FliG|Flagellar motor switch protein FliG, C-terminal|Flagellar motor switch protein FliG, N-terminal domain|Flagellar motor switch protein FliG, alpha-helical|Flagellar motor switch protein FliG, middle domain GO:0003774|GO:0006935|GO:0009288|GO:0071973 G3DSA:1.10.220.30|PF01706|PF14841|PF14842|PIRSF003161|PR00954|SSF48029|TIGR00207 NJ56_RS13060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000067|IPR006182|IPR013556 Flagellar M-ring C-terminal|Flagellar M-ring protein FliF|Secretory protein YscJ/FliF GO:0003774|GO:0009431|GO:0071973 G3DSA:3.30.70.1530|PF01514|PF08345|PIRSF004862|PR01009|TIGR00206 NJ56_RS13065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 MF_00724|PF02049|PR01006|TIGR00205 NJ56_RS13075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001604|IPR018524|IPR020821 DNA/RNA non-specific endonuclease|DNA/RNA non-specific endonuclease, active site|Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 G3DSA:3.40.570.10|PF01223|PS01070|SM00477|SM00892|SSF54060 NJ56_RS13080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003148|IPR013099|IPR016040 NAD(P)-binding domain|Potassium channel domain|Regulator of K+ conductance, N-terminal GO:0006813 G3DSA:1.10.287.70|G3DSA:3.40.50.720|PF02254|PF07885|SSF51735|SSF81324 NJ56_RS13085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003607|IPR029016|IPR029151|IPR033479 Double Cache domain 1|GAF domain-like|HD/PDEase domain|Periplasmic sensor domain-like G3DSA:1.10.3210.10|G3DSA:3.30.450.20|G3DSA:3.30.450.40|PF02743|PF13487|SM00471|SSF103190|SSF109604 NJ56_RS13090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR018060 DNA binding HTH domain, AraC-type|Homeobox domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.280|PF12833|SM00342|SSF46689 NJ56_RS13095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008622 Flagellar protein FliT G3DSA:1.20.58.380|MF_01180|PF05400 NJ56_RS13100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003713 Flagellar protein FliS GO:0044780 G3DSA:1.20.120.340|PF02561|PIRSF039090|SSF101116|TIGR00208 NJ56_RS13105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003481|IPR010809|IPR010810 Flagellar hook-associated 2, C-terminal|Flagellar hook-associated protein 2, N-terminal|Flagellin hook, IN motif GO:0006928|GO:0007155|GO:0009288|GO:0009424|GO:0044781 PF02465|PF07195|PF07196 NJ56_RS13110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001029|IPR001492 Flagellin|Flagellin, D0/D1 domain GO:0005198|GO:0009420|GO:0071973 G3DSA:1.20.1330.10|PF00669|PF00700|PR00207|SSF64518 NJ56_RS13115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001029|IPR001492 Flagellin|Flagellin, D0/D1 domain GO:0005198|GO:0009420|GO:0071973 G3DSA:1.20.1330.10|PF00669|PF00700|PR00207|SSF64518 NJ56_RS13120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001029|IPR001492 Flagellin|Flagellin, D0/D1 domain GO:0005198|GO:0009420|GO:0071973 G3DSA:1.20.1330.10|PF00669|PF00700|PR00207|SSF64518 NJ56_RS13125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000943|IPR007624|IPR007627|IPR007630|IPR011991|IPR012845|IPR013324|IPR013325|IPR014284|IPR028617 RNA polymerase sigma factor FliA|RNA polymerase sigma factor, FliA/WhiG|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|MF_00962|PF04539|PF04542|PF04545|PIRSF000770|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02479|TIGR02937 NJ56_RS13130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004107|IPR022523 Flagellar regulator, FliZ|Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PF02899|TIGR03823 NJ56_RS13135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001926|IPR005966|IPR023702|IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase|D-cysteine desulfhydrase|D-cysteine desulphhydrase, bacterial|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0003824|GO:0019148 G3DSA:3.40.50.1100|MF_01045|PF00291|PIRSF006278|SSF53686|TIGR01275 NJ56_RS13140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001320|IPR001638|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site GO:0004970|GO:0005215|GO:0006810|GO:0016020 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850 NJ56_RS13145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS13150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 NJ56_RS13155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002872|IPR005933|IPR010985|IPR013321|IPR015590|IPR016160|IPR016161|IPR016162|IPR024082|IPR024089|IPR024090|IPR025703|IPR029041|IPR029510 Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase|Arc-type ribbon-helix-helix|Bifunctional protein PutA|Delta-1-pyrroline-5-carboxylate dehydrogenase 3|FAD-linked oxidoreductase-like|Proline dehydrogenase PutA, domain I|Proline dehydrogenase PutA, domain I/II|Proline dehydrogenase PutA, domain II|Proline dehydrogenase domain|Ribbon-helix-helix GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0006561|GO:0008152|GO:0010133|GO:0016491|GO:0055114 G3DSA:1.10.1220.10|G3DSA:1.20.5.550|G3DSA:3.20.20.220|G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PF01619|PF14850|PIRSF000197|PS00070|PS00687|SSF47598|SSF51730|SSF53720|SSF81935|TIGR01238 NJ56_RS13160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001734|IPR011851|IPR018212 Sodium/proline symporter|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0005215|GO:0005298|GO:0006810|GO:0006814|GO:0015824|GO:0016020|GO:0016021|GO:0031402|GO:0055085 PF00474|PS00456|PS00457|TIGR00813|TIGR02121 NJ56_RS13165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011990|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Tetratricopeptide-like helical domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0005515|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.25.40.10|PF00486|SM00862|SSF46894 NJ56_RS13170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004754 Amino acid antiporter|Amino acid/polyamine transporter I GO:0003333|GO:0006865|GO:0015171|GO:0016020|GO:0016021 PF13520|PIRSF006060|TIGR00905 NJ56_RS13175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000310|IPR005308|IPR008286|IPR011193|IPR015421|IPR015422|IPR015424 Orn/Lys/Arg decarboxylase, C-terminal|Orn/Lys/Arg decarboxylase, N-terminal|Orn/Lys/Arg decarboxylase, major domain|Ornithine/lysine/arginine decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0005737|GO:0006520|GO:0016831 G3DSA:3.40.640.10|G3DSA:3.90.100.10|G3DSA:3.90.1150.10|PF01276|PF03709|PF03711|PIRSF009393|PS00703|SSF53383|SSF55904 NJ56_RS13180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0003333|GO:0006810|GO:0006865|GO:0015171|GO:0016020|GO:0016021|GO:0055085 PF00324|PIRSF006060|PS00218 NJ56_RS13190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 NJ56_RS13195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR016040|IPR020904 NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 NJ56_RS13200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic PF10769 NJ56_RS13205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR001789|IPR011006|IPR011991|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 NJ56_RS13210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000305|IPR001162|IPR001943|IPR004791|IPR010994 GIY-YIG nuclease superfamily|RuvA domain 2-like|UVR domain|UvrABC system, subunit C|UvrC family homology region GO:0005515|GO:0005737|GO:0006281|GO:0009380|GO:0009381 G3DSA:1.10.150.20|G3DSA:3.40.1440.10|G3DSA:4.10.860.10|MF_00203|PF01541|PF02151|PF08459|SM00465|SSF46600|SSF47781|SSF82771|TIGR00194 NJ56_RS13215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000462|IPR004570 CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016020|GO:0016021|GO:0016780 PF01066|PIRSF000847|PS00379|TIGR00560 NJ56_RS13235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007684 Zinc finger, Ogr/Delta-type PF04606 NJ56_RS13240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:3.55.50.10|PF05954|SSF69279 NJ56_RS13245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009734|IPR016912 Bacteriophage P2, GpU|Myoviridae, GpU PF06995|PIRSF029208 NJ56_RS13250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010090 Phage tail tape measure protein G3DSA:1.20.58.60|PF10145|TIGR01760 NJ56_RS13255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009493 Burkholderia phage phiE202, Gp27 PF06528 NJ56_RS13260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019289 Bacteriophage tail protein Gp41, putative PF10109 NJ56_RS13265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006498 Tail tube protein PF04985|TIGR01611 NJ56_RS13270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020287|IPR035089 Tail sheath protein, C-terminal domain|Tail sheath protein, subtilisin-like domain PF04984|PF17482 NJ56_RS13280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011083|IPR022225 Phage tail collar domain|Phage tail fibre protein G3DSA:3.90.1340.10|G3DSA:4.10.1070.10|PF07484|PF12571|SSF88874 NJ56_RS13285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006521 Tail protein I PF09684|TIGR01634 NJ56_RS13290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006949|IPR014507 Baseplate assembly protein J, predicted|Baseplate protein J-like PF04865|PIRSF020481 NJ56_RS13295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007048 GpW/Gp25/anti-adapter protein IraD G3DSA:3.10.450.40|PF04965|SSF160719 NJ56_RS13300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006531|IPR013046 Gp5 N-terminal|Phage baseplate assembly protein V/Gp45 G3DSA:2.40.50.260|PF04717|TIGR01644 NJ56_RS13310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010359 IrrE N-terminal-like domain PF06114 NJ56_RS13315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025683 Protein beta PF14350 NJ56_RS13325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006522 Phage virion morphogensis protein PF05069|TIGR01635 NJ56_RS13330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009678 Bacteriophage tail completion protein R PF06891 NJ56_RS13335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020000 Bacteriophage P2, LysB TIGR03495 NJ56_RS13340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002196|IPR023346|IPR023347 Glycoside hydrolase, family 24|Lysozyme domain|Lysozyme-like domain GO:0003796|GO:0009253|GO:0016998 G3DSA:1.10.530.40|PF00959|SSF53955 NJ56_RS13345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032118 Bacteriophage holin HP1 family PF16080 NJ56_RS13350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008861 Phage Tail Protein X-like G3DSA:3.10.350.10|PF05489 NJ56_RS13355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009225 Bacteriophage head completion protein GpL GO:0019069 PF05926 NJ56_RS13360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010270|IPR011990 Bacteriophage P2, GpM|Tetratricopeptide-like helical domain GO:0003677|GO:0004519|GO:0005515|GO:0019069 G3DSA:1.25.40.10|PF05944 NJ56_RS13365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006441 Bacteriophage P2, GpN, major capsid GO:0019028 PF05125|TIGR01551 NJ56_RS13370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009228 Capsid scaffolding protein GpO GO:0019069 G3DSA:3.90.20.10|PF05929 NJ56_RS13375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010332|IPR035421 ATPase terminase subunit, putative|Terminase, large subunit gp17-like GO:0005524|GO:0019069 G3DSA:1.10.10.60|PF03237|PF06056|PF17289 NJ56_RS13380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006430|IPR006944|IPR030935 Bacteriophage/Gene transfer agent portal protein|Phage portal protein PBSX family|Phage portal protein PBSX family, Proteobacteria PF04860|PIRSF018494|TIGR01540 NJ56_RS13395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008766 Replication gene A protein GO:0006260 PF05840 NJ56_RS13400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020126 Protein of unknown function DUF2732 PD057914|PF10809 NJ56_RS13415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009679 Bacteriophage 186, CII PF06892 NJ56_RS13425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010744|IPR032499 Bacteriophage CI repressor|Bacteriophage CI repressor, C-terminal GO:0003677|GO:0045892|GO:0051259 G3DSA:1.10.260.40|PF07022|PF16452 NJ56_RS13430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001357|IPR029024 BRCT domain|TerB-like G3DSA:1.10.3680.10|G3DSA:3.40.50.10190|SSF52113 NJ56_RS13435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762|IPR023109 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 NJ56_RS13440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:1.20.1250.20 NJ56_RS13470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011646|IPR027417 KAP family P-loop domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF07693|SSF52540 NJ56_RS13490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR012263|IPR012327|IPR023095|IPR029063 Adenine modification methylase, M.EcoRV-type|Adenine-specific methyltransferase, domain 2|D12 class N6 adenine-specific DNA methyltransferase|DNA methylase, N-6 adenine-specific, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0009007|GO:0032259|GO:0032775 G3DSA:1.10.1020.10|G3DSA:3.40.50.150|PF02086|PIRSF000398|PR00505|PS00092|SSF53335|TIGR00571 NJ56_RS13495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020126 Protein of unknown function DUF2732 PD057914|PF10809 NJ56_RS13525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982|IPR027910 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain|YdiL-like domain GO:0003677|GO:0043565 G3DSA:1.10.3100.10|PF13560|SM00530|SSF47413 NJ56_RS13530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR018306|IPR025280 Bacteriophage T5, Orf172 DNA-binding|Domain of unknown function DUF4041|Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.40.10|PF13250|PF13455|SM00974 NJ56_RS13545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001584|IPR012337 Integrase, catalytic core|Ribonuclease H-like domain GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|SSF53098 NJ56_RS13550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003122|IPR003660|IPR004089|IPR004090 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF02203|PR00260|SM00283|SM00304|SSF47170|SSF58104 NJ56_RS13560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR008995|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF50331|SSF52540 NJ56_RS13565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS13570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006061|IPR026045 Ferric binding protein|Solute-binding family 1, conserved site GO:0006810 G3DSA:3.40.190.10|PF13343|PIRSF002825|PS01037|SSF53850 NJ56_RS13580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009056|IPR014353 Cytochrome c-like domain|Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0009055|GO:0016020|GO:0016614|GO:0020037 G3DSA:1.10.760.10|PF13442|PIRSF000018|SSF46626 NJ56_RS13585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 G3DSA:3.50.50.60|PF13450|SSF51905 NJ56_RS13595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF13673|SSF55729 NJ56_RS13610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031837 Domain of unknown function DUF5071 PF16804 NJ56_RS13615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001223|IPR017853 Glycoside hydrolase family 18, catalytic domain|Glycoside hydrolase superfamily GO:0005975 G3DSA:3.20.20.80|PF00704|SSF51445 NJ56_RS13620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013099 Potassium channel domain G3DSA:1.10.287.70|PF07885|SSF81324 NJ56_RS13625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012338|IPR015868 Beta-lactamase/transpeptidase-like|Glutaminase GO:0004359|GO:0006541 G3DSA:3.40.710.10|MF_00313|PF04960|SSF56601|TIGR03814 NJ56_RS13630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR022520 Amino acid/polyamine transporter I|Putative glutamate/gamma-aminobutyrate antiporter GO:0003333|GO:0015171|GO:0016020 PF13520|PIRSF006060|TIGR03813 NJ56_RS13635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002129|IPR010107|IPR015421|IPR015422|IPR015424|IPR021115 Glutamate decarboxylase|Pyridoxal phosphate-dependent decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|Pyridoxal-phosphate binding site GO:0003824|GO:0004351|GO:0006536|GO:0016831|GO:0019752|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00282|PS00392|SSF53383|TIGR01788 NJ56_RS13640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006145|IPR006224|IPR020103 Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|PF00849|PS01129|SSF55120 NJ56_RS13650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003876 Arginine deiminase GO:0006527|GO:0016990 G3DSA:3.75.10.10|MF_00242|PF02274|PIRSF006356|PR01466|SSF55909|TIGR01078 NJ56_RS13655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PF13520|PIRSF006060 NJ56_RS13665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 PF03553 NJ56_RS13670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018636 Protein of unknown function DUF2058 PF09831 NJ56_RS13675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:3.10.450.160 NJ56_RS13680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000748|IPR002942|IPR006145|IPR018496|IPR020103 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.10.290.10|G3DSA:3.30.70.1560|G3DSA:3.30.70.580|PF00849|PF01479|PS01149|SM00363|SSF55120|SSF55174|TIGR00093 NJ56_RS13690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 G3DSA:3.40.50.2300|PF02302|SSF52794 NJ56_RS13695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003352|IPR004501|IPR004796 Phosphotransferase system, EIIC|Phosphotransferase system, EIIC component, type 3|Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016020|GO:0016021 PF02378|PIRSF006351|TIGR00359|TIGR00410 NJ56_RS13700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001360|IPR017853|IPR018120 Glycoside hydrolase family 1|Glycoside hydrolase family 1, active site|Glycoside hydrolase superfamily GO:0004553|GO:0005975 G3DSA:3.20.20.80|PF00232|PR00131|PS00572|SSF51445 NJ56_RS13705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 G3DSA:1.20.58.80|PF02255|PIRSF000699|SSF46973 NJ56_RS13710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR011051|IPR013096|IPR014710|IPR018060|IPR018062|IPR020449 Cupin 2, conserved barrel|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox domain-like|RmlC-like cupin domain|RmlC-like jelly roll fold|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF07883|PF12833|PR00032|PS00041|SM00342|SSF46689|SSF51182 NJ56_RS13715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006879|IPR011330|IPR022948 Carbohydrate deacetylase YdjC-like|Chitooligosaccharide deacetylase ChbG-like, bacteria|Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0000272|GO:0003824|GO:0005975|GO:0016811 G3DSA:3.20.20.370|MF_01246|PF04794|SSF88713 NJ56_RS13740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 NJ56_RS13745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 NJ56_RS13750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 NJ56_RS13755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008152|GO:0008168 G3DSA:3.40.50.150|PF08241|SSF53335 NJ56_RS13765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF13673|SSF55729 NJ56_RS13770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000291|IPR005905|IPR011095|IPR011127|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|D-alanine--D-alanine ligase|D-alanine--D-alanine ligase, C-terminal|D-alanine--D-alanine ligase, N-terminal domain|D-alanine--D-alanine ligase/VANA/B/C, conserved site|Pre-ATP-grasp domain GO:0003824|GO:0005524|GO:0005737|GO:0008716 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00047|PF01820|PF07478|PIRSF039102|PS00843|PS00844|SSF52440|SSF56059|TIGR01205 NJ56_RS13775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010486|IPR028623 HNS-dependent expression A/B|HNS-dependent expression B GO:0009268|GO:0051082 G3DSA:1.10.890.10|MF_00947|PD070929|PF06411 NJ56_RS13780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000772|IPR003558 Cytolethal distending toxin A/C|Ricin B, lectin domain GO:0009405 G3DSA:2.80.10.50|PF03498|SSF50370 NJ56_RS13785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005135 Endonuclease/exonuclease/phosphatase G3DSA:3.60.10.10|PF03372|SSF56219 NJ56_RS13790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR000160|IPR001610|IPR013655|IPR029787 GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS fold-3 GO:0005515 G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF08447|PF13426|SM00086|SM00091|SM00267|SSF55073|SSF55785|TIGR00229|TIGR00254 NJ56_RS13795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000687|IPR011009|IPR018935 Protein kinase-like domain|RIO kinase|RIO kinase, conserved site GO:0004674|GO:0005524 G3DSA:1.10.510.10|G3DSA:3.30.200.20|PF01163|PS01245|SM00090|SSF56112 NJ56_RS13800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 NJ56_RS13805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004754 Amino acid antiporter|Amino acid/polyamine transporter I GO:0003333|GO:0006865|GO:0015171|GO:0016020|GO:0016021 PF13520|PIRSF006060|TIGR00905 NJ56_RS13810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR018060|IPR018062|IPR020449 DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox domain-like|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PR00032|PS00041|SM00342|SSF46689 NJ56_RS13815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020262 Uncharacterised protein family YecJ PD060536|PF10964 NJ56_RS13820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025611 YobH-like protein PF13996 NJ56_RS13825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020907 PhoP/PhoQ regulator MgrB PF13998 NJ56_RS13830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025594 YebO-like protein PF13974 NJ56_RS13835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019701 Bacteriophage P22, NinX G3DSA:3.30.2120.10|PF10765 NJ56_RS13840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025135 Protein of unknown function DUF4060 PF13269 NJ56_RS13845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0003333|GO:0006810|GO:0006865|GO:0015171|GO:0016020|GO:0016021|GO:0055085 PF00324|PIRSF006060|PS00218 NJ56_RS13850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009746|IPR011250 Antimicrobial peptide resistance/lipid A acylation PagP|Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 G3DSA:2.40.160.20|MF_00837|PD103779|PF07017|SSF56925 NJ56_RS13855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019672 Protein of unknown function DUF2627 PF10736 NJ56_RS13860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 NJ56_RS13865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003730|IPR011324 Cytotoxic necrotizing factor-like, catalytic|Multi-copper polyphenol oxidoreductase G3DSA:3.60.140.10|PF02578|SSF64438|TIGR00726 NJ56_RS13870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001460|IPR005311|IPR012338 Beta-lactamase/transpeptidase-like|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, transpeptidase GO:0008658 G3DSA:3.40.710.10|G3DSA:3.90.1310.10|PF00905|PF03717|SSF56519|SSF56601 NJ56_RS13875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016718|IPR025714|IPR029063 Methyltransferase domain|S-adenosyl-L-methionine-dependent methyltransferase|rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 G3DSA:3.40.50.150|PF13847|PIRSF018249|SSF53335 NJ56_RS13885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021329 Protein of unknown function DUF2938 PF11158 NJ56_RS13890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001307|IPR001763|IPR001845|IPR011991 HTH ArsR-type DNA-binding domain|Rhodanese-like domain|Thiosulphate sulfurtransferase, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0004792|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.250.10|PF00581|PF12840|PR00778|PS00380|SM00418|SM00450|SSF46785|SSF52821 NJ56_RS13895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 NJ56_RS13900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR001242|IPR009081|IPR010071|IPR020459|IPR020845|IPR025110 AMP-binding|AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Amino acid adenylation domain|Condensation domain|Phosphopantetheine binding ACP domain GO:0003824|GO:0008152 G3DSA:1.10.1200.10|G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.30.559.10|G3DSA:3.40.50.980|PF00501|PF00550|PF00668|PF13193|PR00154|PS00455|SSF47336|SSF52777|SSF56801|TIGR01733 NJ56_RS13905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000172|IPR007867|IPR012132|IPR023753 FAD/NAD(P)-binding domain|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal GO:0016491|GO:0016614|GO:0050660|GO:0055114 G3DSA:3.30.560.10|G3DSA:4.10.450.10|PF00732|PF05199|PIRSF000137|PS00623|SSF51905|SSF54373 NJ56_RS13910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001031|IPR029058 Alpha/Beta hydrolase fold|Thioesterase GO:0009058|GO:0016788 G3DSA:3.40.50.1820|PF00975|SSF53474 NJ56_RS13915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|SSF47203|SSF56645 NJ56_RS13920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF00583|SSF55729 NJ56_RS13925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001486|IPR009050 Globin-like|Truncated hemoglobin GO:0019825 G3DSA:1.10.490.10|PF01152|SSF46458 NJ56_RS13930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003382 Flavoprotein GO:0003824 G3DSA:3.40.50.1950|PF02441|SSF52507 NJ56_RS13935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003810|IPR022929 Putative manganese efflux pump|Putative manganese efflux pump MntP MF_01521|PF02659 NJ56_RS13940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009328 Protein of unknown function DUF986 MF_01071|PD091196|PF06173|PIRSF020687 NJ56_RS13945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 PF03613|TIGR00828 NJ56_RS13950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 PF03609|TIGR00822 NJ56_RS13955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004701|IPR004720|IPR013789|IPR018455 Phosphotransferase system, mannose family IIA component|Phosphotransferase system, mannose-type IIA component|Phosphotransferase system, sorbose subfamily IIB component|Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008643|GO:0008982|GO:0009401|GO:0016021|GO:0016773 G3DSA:3.40.35.10|G3DSA:3.40.50.510|PF03610|PF03830|SSF52728|SSF53062|TIGR00824|TIGR00854 NJ56_RS13960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR005170|IPR005496|IPR016166|IPR016169 CBS domain|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD-binding, type 2|Integral membrane protein TerC|Transporter-associated domain GO:0003824|GO:0016021|GO:0016614|GO:0050660|GO:0055114 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|PF03741|SM01091|SSF54631|SSF56176 NJ56_RS13965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004644|IPR005130|IPR005131|IPR029009 Allosteric substrate binding domain|Iron-sulphur-dependent L-serine dehydratase single chain form|Serine dehydratase beta chain|Serine dehydratase-like, alpha subunit GO:0003941|GO:0006094|GO:0051539 G3DSA:1.10.4100.10|G3DSA:3.30.1330.90|PF03313|PF03315|SSF143548|TIGR00720 NJ56_RS13970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000059|IPR000086|IPR015797 NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016787|GO:0016818|GO:0030145 G3DSA:3.90.79.10|PF00293|PS01293|SSF55811 NJ56_RS13975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005801|IPR005802|IPR006805|IPR015890|IPR019999 ADC synthase|Anthranilate synthase component I, N-terminal|Anthranilate synthase component I-like|Chorismate-utilising enzyme, C-terminal|Para-aminobenzoate synthase, component I GO:0009058|GO:0009396 G3DSA:3.60.120.10|PF00425|PF04715|PR00095|SSF56322|TIGR00553 NJ56_RS13980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005371 Uncharacterised protein family UPF0181 MF_00507|PD026807|PF03701 NJ56_RS13985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003135|IPR005862|IPR011054|IPR013815|IPR016185 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type|ATP-grasp fold, subdomain 1|Formate-dependent phosphoribosylglycinamide formyltransferase|Pre-ATP-grasp domain|Rudiment single hybrid motif GO:0000287|GO:0003824|GO:0004644|GO:0005524|GO:0009152|GO:0016742 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_01643|PF02222|SSF51246|SSF52440|SSF56059|TIGR01142 NJ56_RS13990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000629|IPR001650|IPR005580|IPR011545|IPR014001|IPR027417|IPR028619 ATP-dependent RNA helicase DEAD-box, conserved site|ATP-dependent RNA helicase DbpA|DEAD box helicase DbpA/CsdA, RNA-binding domain|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000027|GO:0003676|GO:0003724|GO:0005524 G3DSA:3.40.50.300|MF_00965|PF00270|PF00271|PF03880|PS00039|SM00487|SM00490|SSF52540 NJ56_RS13995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009813 Uncharacterised protein family YebG G3DSA:1.10.10.710|PF07130 NJ56_RS14000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007374|IPR008314|IPR015947 ASCH domain|PUA-like domain|Uncharacterised conserved protein UCP029143 G3DSA:2.30.130.30|MF_00684|PF04266|PIRSF029143|SM01022|SSF88697 NJ56_RS14005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025603 YebF/Colicin-M immunity protein PD077599|PF13995 NJ56_RS14015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001375|IPR002470|IPR023302|IPR029058 Alpha/Beta hydrolase fold|Peptidase S9, prolyl oligopeptidase, catalytic domain|Peptidase S9A, N-terminal domain|Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508|GO:0008236|GO:0070008 G3DSA:2.130.10.120|G3DSA:3.40.50.1820|PF00326|PF02897|PR00862|SSF50993|SSF53474 NJ56_RS14020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012337|IPR013520 Exonuclease, RNase T/DNA polymerase III|Ribonuclease H-like domain GO:0003676 G3DSA:3.30.420.10|PF00929|SM00479|SSF53098 NJ56_RS14025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000073|IPR002410|IPR005944|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Peptidase S33|Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508|GO:0008233 G3DSA:3.40.50.1820|PF00561|PIRSF006431|PR00793|SSF53474|TIGR01249 NJ56_RS14030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 G3DSA:1.20.58.250|PD057609|PF06440|SSF46575 NJ56_RS14035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008331|IPR009078|IPR012347 Ferritin-like superfamily|Ferritin-related|Ferritin/DPS protein domain GO:0006879|GO:0008199 G3DSA:1.20.1260.10|PF00210|SSF47240 NJ56_RS14040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007348|IPR014756 CopC domain|Immunoglobulin E-set GO:0005507|GO:0042597|GO:0046688 G3DSA:2.60.40.1220|PF04234|SSF81296 NJ56_RS14045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008457 Copper resistance protein D GO:0016021 PF05425 NJ56_RS14050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019648 Protein of unknown function DUF2511 PF10709 NJ56_RS14055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 NJ56_RS14060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001466|IPR001586|IPR012338 Beta-lactamase, class-C active site|Beta-lactamase-related|Beta-lactamase/transpeptidase-like GO:0008800|GO:0017001|GO:0030288 G3DSA:3.40.710.10|PF00144|PS00336|SSF56601 NJ56_RS14080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019689 Toxin GhoT/OrtT PF10753 NJ56_RS14085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005534|IPR007195 Curli production assembly/transport component CsgG|TolB, N-terminal GO:0015031|GO:0030288|GO:0042597 G3DSA:3.40.50.10070|PF03783|SSF52964 NJ56_RS14090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR014508 Tetratricopeptide-like helical domain|Uncharacterised conserved protein withTPR-like repeats GO:0005515 G3DSA:1.25.40.10|PF16068|PIRSF020555 NJ56_RS14095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008517 Protein of unknown function DUF799 G3DSA:3.40.50.10070|PF05643 NJ56_RS14105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007374|IPR009326|IPR015947 ASCH domain|PUA-like domain|Protein of unknown function DUF984 G3DSA:3.10.400.10|PF04266|PIRSF021320|SM01022|SSF88697 NJ56_RS14110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009950 Protein of unknown function DUF1480 PD060427|PF07351 NJ56_RS14115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR000160|IPR001610|IPR013655|IPR013656|IPR029787 GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS fold-3|PAS fold-4 GO:0005515 G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF08447|PF08448|SM00086|SM00091|SM00267|SSF55073|SSF55785|TIGR00229|TIGR00254 NJ56_RS14120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003399 Mce/MlaD PF02470 NJ56_RS14125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005219|IPR007498 Conserved hypothetical protein CHP00155|Paraquat-inducible protein A PF04403|TIGR00155 NJ56_RS14130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003018|IPR029016 GAF domain|GAF domain-like GO:0005515 G3DSA:3.30.450.40|PF13185|SM00065|SSF55781 NJ56_RS14135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016103|IPR023529|IPR035236 ProQ/FinO domain|RNA chaperone ProQ|RNA chaperone ProQ, C-terminal GO:0003723|GO:0010608|GO:0033592|GO:0034057 G3DSA:1.10.1710.10|MF_00749|PF04352|PF17516|SM00945|SSF48657 NJ56_RS14140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001478|IPR004447|IPR005151|IPR020992|IPR029045 C-terminal-processing peptidase S41A|ClpP/crotonase-like domain|PDZ domain|Tail specific protease|Tail specific protease, C-terminal GO:0005515|GO:0006508|GO:0008236 G3DSA:2.30.42.10|G3DSA:3.30.750.44|G3DSA:3.90.226.10|PF00595|PF03572|PF11818|SM00228|SM00245|SSF50156|SSF52096|TIGR00225 NJ56_RS14145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001915|IPR022919 Peptidase M48|Peptidase M48, protease HtpX, putative GO:0004222|GO:0006508 G3DSA:3.30.2010.10|MF_00188|PF01435 NJ56_RS14155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846 Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PR01036|SSF103473 NJ56_RS14160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005471|IPR011991|IPR014757|IPR029016 GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 NJ56_RS14165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002477|IPR002502 N-acetylmuramoyl-L-alanine amidase domain|Peptidoglycan binding-like GO:0008745|GO:0009253 G3DSA:1.10.101.10|G3DSA:3.40.80.10|PF01471|PF01510|SM00644|SSF47090|SSF55846 NJ56_RS14170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 G3DSA:1.10.3860.10|PF00375|PR00173|SSF118215 NJ56_RS14175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007404|IPR016956 Inner membrane protein YdjM|LexA-binding, inner membrane-associated putative hydrolase PF04307|PIRSF030780 NJ56_RS14180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006439|IPR023198|IPR023214 HAD hydrolase, subfamily IA|HAD-like domain|Phosphoglycolate phosphatase, domain 2 GO:0008152|GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|PR00413|SSF56784|TIGR01509 NJ56_RS14185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025229 YniB-like protein PD035714|PF14002 NJ56_RS14190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011009|IPR016477 Fructosamine/Ketosamine-3-kinase|Protein kinase-like domain G3DSA:3.30.200.20|G3DSA:3.90.1200.10|PF03881|PIRSF006221|SSF56112 NJ56_RS14195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001626|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD/TroCD-like|ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 G3DSA:1.10.3470.10|PF00950|SSF81345 NJ56_RS14200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001626|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD/TroCD-like|ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 G3DSA:1.10.3470.10|PF00950|SSF81345 NJ56_RS14205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS14210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006127|IPR006128|IPR006129 Adhesin B|Adhesion lipoprotein|Periplasmic solute binding protein, ZnuA-like GO:0007155|GO:0030001|GO:0046872 G3DSA:3.40.50.1980|PF01297|PR00690|PR00691|SSF53807 NJ56_RS14215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000189|IPR008258|IPR023346 Lysozyme-like domain|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1 GO:0000270|GO:0008933|GO:0016020 G3DSA:1.10.530.10|PF01464|PS00922|SSF53955 NJ56_RS14220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PF01914|TIGR00427 NJ56_RS14245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025309 KTSC domain PF13619 NJ56_RS14250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012427 Protein of unknown function DUF1622 PF07784 NJ56_RS14255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002314|IPR002320|IPR004095|IPR004154|IPR012675|IPR012676|IPR012947|IPR018163 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Beta-grasp domain|TGS|TGS-like|Threonine-tRNA ligase, class IIa|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166|GO:0004812|GO:0004829|GO:0005524|GO:0005737|GO:0006418|GO:0006435|GO:0016876|GO:0043039 G3DSA:3.10.20.30|G3DSA:3.30.930.10|G3DSA:3.30.980.10|G3DSA:3.40.50.800|MF_00184|PF00587|PF02824|PF03129|PF07973|PR01047|SM00863|SSF52954|SSF55186|SSF55681|SSF81271|TIGR00418 NJ56_RS14260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001288|IPR019813|IPR019814|IPR019815 Translation initiation factor 3|Translation initiation factor 3, C-terminal|Translation initiation factor 3, N-terminal|Translation initiation factor 3, conserved site GO:0003743|GO:0006413 G3DSA:3.10.20.80|G3DSA:3.30.110.10|MF_00080|PF00707|PF05198|PS00938|SSF54364|SSF55200|TIGR00168 NJ56_RS14265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001706|IPR018265|IPR021137 Ribosomal protein L35|Ribosomal protein L35, conserved site|Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00514|PF01632|PR00064|PS00936|SSF143034|TIGR00001 NJ56_RS14270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005813|IPR035566 Ribosomal protein L20|Ribosomal protein L20 C-terminal domain GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:1.10.1900.20|MF_00382|PD002389|PF00453|PR00062|PS00937|SSF74731|TIGR01032 NJ56_RS14275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002319|IPR004188|IPR004529|IPR010978|IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial|Phenylalanine-tRNA ligase, class II, N-terminal|Phenylalanyl-tRNA synthetase|Phenylalanyl-tRNA synthetase, class IIc, alpha subunit|tRNA-binding arm GO:0000049|GO:0000166|GO:0004812|GO:0004826|GO:0005524|GO:0005737|GO:0006432|GO:0043039 G3DSA:3.30.930.10|MF_00281|PF01409|PF02912|SSF46589|SSF55681|TIGR00468 NJ56_RS14280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002547|IPR004532|IPR005121|IPR005146|IPR005147|IPR009061|IPR012340|IPR020825 B3/B4 tRNA-binding domain|Ferrodoxin-fold anticodon-binding domain|Nucleic acid-binding, OB-fold|Phenylalanine-tRNA ligase, class IIc, beta subunit|Phenylalanyl-tRNA synthetase, B3/B4|Putative DNA-binding domain|tRNA synthetase, B5-domain|tRNA-binding domain GO:0000049|GO:0000287|GO:0003723|GO:0004826|GO:0005524|GO:0005737|GO:0006432 G3DSA:2.40.50.140|G3DSA:3.30.56.10|G3DSA:3.30.70.380|G3DSA:3.30.930.10|G3DSA:3.50.40.10|MF_00283|PF01588|PF03147|PF03483|PF03484|SM00873|SM00874|SM00896|SSF46955|SSF50249|SSF54991|SSF55681|SSF56037|TIGR00472 NJ56_RS14285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000119|IPR005684|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain|Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 G3DSA:4.10.520.10|MF_00380|PF00216|PR01727|PS00045|SM00411|SSF47729|TIGR00987 NJ56_RS14290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007829 TM2 domain PF05154 NJ56_RS14300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006531|IPR013046 Gp5 N-terminal|Phage baseplate assembly protein V/Gp45 PF04717|TIGR01644 NJ56_RS14305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003812 Fido domain G3DSA:1.10.3290.10|PF02661|SSF140931 NJ56_RS14315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006522 Phage virion morphogensis protein PF05069|TIGR01635 NJ56_RS14325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 NJ56_RS14330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000522|IPR023691|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD-like|ABC transporter, FecCD/TroCD-like|ABC transporter, vitamin B12 import, permease protein BtuC GO:0005215|GO:0015889|GO:0016020 G3DSA:1.10.3470.10|MF_01004|PF01032|SSF81345 NJ56_RS14335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR023693|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter, vitamin B12, BtuD|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015889|GO:0016887 G3DSA:3.40.50.300|MF_01005|PF00005|PS00211|SM00382|SSF52540 NJ56_RS14340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000653|IPR015421|IPR015422|IPR015424|IPR022850 DegT/DnrJ/EryC1/StrS aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0003824|GO:0008483 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01167|PF01041|PIRSF000390|SSF53383 NJ56_RS14345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR022857|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases|Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 G3DSA:3.90.550.10|MF_01164|PF00535|SSF53448 NJ56_RS14350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001509|IPR002376|IPR005793|IPR011034|IPR016040|IPR021168 Bifunctional polymyxin resistance protein, ArnA|Formyl transferase, C-terminal|Formyl transferase, C-terminal-like|Formyl transferase, N-terminal|NAD(P)-binding domain|NAD-dependent epimerase/dehydratase GO:0003824|GO:0009058|GO:0016742|GO:0050662|GO:0055114 G3DSA:3.10.25.10|G3DSA:3.40.50.170|G3DSA:3.40.50.720|MF_01166|PF00551|PF01370|PF02911|PIRSF036506|SSF50486|SSF51735|SSF53328 NJ56_RS14355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002509|IPR011330|IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable|Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain GO:0003824|GO:0005975|GO:0016810|GO:0016811 G3DSA:3.20.20.370|MF_01870|PF01522|SSF88713 NJ56_RS14360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003342|IPR022839 Glycosyl transferase family 39/83|Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0000030|GO:0006493|GO:0016020|GO:0016763 MF_01165|PF02366 NJ56_RS14365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620|IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE|EamA domain GO:0016020|GO:0016021 MF_01869|PF00892|SSF103481 NJ56_RS14370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF MF_00538|SSF103481 NJ56_RS14375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000064 Endopeptidase, NLPC/P60 domain G3DSA:2.30.260.10|G3DSA:3.90.1720.10|PF00877|SSF54001 NJ56_RS14380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004143|IPR004562|IPR019491|IPR023741 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain|Lipoate protein ligase, C-terminal|Lipoate-protein ligase A|Lipoyltransferase/lipoate-protein ligase GO:0006464|GO:0009249|GO:0016979|GO:0018055 G3DSA:3.30.390.50|G3DSA:3.30.930.10|MF_01602|PF03099|PF10437|SSF55681|SSF82649|TIGR00545 NJ56_RS14385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003846 Uncharacterised protein family UPF0061 MF_00692|PF02696 NJ56_RS14390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS14395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000522|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD-like|ABC transporter, FecCD/TroCD-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 NJ56_RS14400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002491 ABC transporter periplasmic binding domain GO:0005488 G3DSA:3.40.50.1980|PF01497|SSF53807 NJ56_RS14405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 G3DSA:3.40.1570.10|PF05171|SSF144064 NJ56_RS14410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000531|IPR010916|IPR010949|IPR011276|IPR012910 TonB box, conserved site|TonB-dependent haem/haemoglobin receptor|TonB-dependent haemoglobin/transferrin/lactoferrin receptor|TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain GO:0004872|GO:0005215|GO:0006810|GO:0016020|GO:0019867 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PS00430|SSF56935|TIGR01785|TIGR01786 NJ56_RS14415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019600 Hemin uptake protein HemP G3DSA:2.10.70.10|PF10636 NJ56_RS14420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006218|IPR006219|IPR013785 Aldolase-type TIM barrel|DAHP synthetase I/KDSA|DHAP synthase, class 1 GO:0003824|GO:0003849|GO:0009058|GO:0009073 G3DSA:3.20.20.70|PF00793|PIRSF001361|SSF51569|TIGR00034 NJ56_RS14425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005177|IPR008917|IPR026530 Bifunctional kinase-pyrophosphorylase|Phosphoenolpyruvate synthase regulatory protein|Transcription factor, Skn-1-like, DNA-binding domain GO:0003677|GO:0005524|GO:0006355|GO:0016772 G3DSA:3.40.50.300|MF_01062|PF03618|SSF47454 NJ56_RS14430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000121|IPR002192|IPR006319|IPR008279|IPR013815|IPR015813|IPR018274|IPR023151 ATP-grasp fold, subdomain 1|PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphoenolpyruvate synthase|Pyruvate phosphate dikinase, PEP/pyruvate-binding|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824|GO:0005524|GO:0006090|GO:0008986|GO:0016301|GO:0016310|GO:0016772 G3DSA:3.20.20.60|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.50.30.10|PF00391|PF01326|PF02896|PIRSF000854|PS00370|PS00742|SSF51621|SSF52009|SSF56059|TIGR01418 NJ56_RS14440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002549 Transmembrane protein TqsA-like PF01594 NJ56_RS14445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004113|IPR006094|IPR009051|IPR016164|IPR016166|IPR016167|IPR016169|IPR016171|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD linked oxidase, N-terminal|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0016491|GO:0016614|GO:0050660|GO:0051536|GO:0055114 G3DSA:1.10.1060.10|G3DSA:1.10.45.10|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF01565|PF02913|PF13183|PS00198|SSF46548|SSF55103|SSF56176 NJ56_RS14450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003736|IPR006683|IPR029069 HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 NJ56_RS14455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000361|IPR016092|IPR017870 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion, C-terminal, conserved site GO:0005198|GO:0051536|GO:0097428 G3DSA:2.60.300.12|PF01521|PS01152|SSF89360|TIGR00049 NJ56_RS14460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000825|IPR010231 SUF system FeS cluster assembly, SufB|SUF system FeS cluster assembly, SufBD GO:0016226 PF01458|SSF101960|TIGR01980 NJ56_RS14465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR010230|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|FeS cluster assembly SUF system, ATPase SufC|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR01978 NJ56_RS14470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000825|IPR011542 SUF system FeS cluster assembly, SufBD|SUF system FeS cluster assembly, SufD GO:0016226 PF01458|SSF101960|TIGR01981 NJ56_RS14475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000192|IPR010970|IPR015421|IPR015422|IPR015424|IPR020578 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulfurase, SufS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0006534|GO:0030170|GO:0031071 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PS00595|SSF53383|TIGR01979 NJ56_RS14480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003808|IPR023939 Cysteine desulfuration protein SufE|Fe-S metabolism associated domain, SufE-like GO:0006790|GO:0016226 G3DSA:3.90.1010.10|MF_01832|PF02657|SSF82649 NJ56_RS14485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005490 L,D-transpeptidase catalytic domain GO:0016740 G3DSA:2.40.440.10|G3DSA:3.10.350.10|PF03734|SSF141523 NJ56_RS14490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006817|IPR016367 Lipoprotein leucine-zipper|Murein-lipoprotein GO:0019867 G3DSA:1.20.5.190|PF04728|PIRSF002855|SSF58042 NJ56_RS14495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001697|IPR011037|IPR015793|IPR015795|IPR015813|IPR018209 Pyruvate kinase|Pyruvate kinase, C-terminal|Pyruvate kinase, active site|Pyruvate kinase, barrel|Pyruvate kinase-like, insert domain|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0000287|GO:0003824|GO:0004743|GO:0006096|GO:0030955 G3DSA:2.40.33.10|G3DSA:3.20.20.60|G3DSA:3.40.1380.20|PF00224|PF02887|PR01050|PS00110|SSF50800|SSF51621|SSF52935|TIGR01064 NJ56_RS14515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002528|IPR022913 Multi antimicrobial extrusion protein|Multidrug resistance protein MdtK GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 MF_00400|PF01554|PIRSF006603|TIGR00797 NJ56_RS14520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001783|IPR017938|IPR023366|IPR026017 ATP synthase subunit alpha-like domain|Lumazine-binding domain|Lumazine-binding protein|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.20|PF00677|PIRSF000498|SSF63380|TIGR00187 NJ56_RS14525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003333|IPR029063 Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008610 G3DSA:3.40.50.150|PF02353|PIRSF003085|SSF53335 NJ56_RS14530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004812|IPR011701|IPR020846 Drug resistance transporter Bcr/CmlA subfamily|Major facilitator superfamily|Major facilitator superfamily domain GO:0005215|GO:0006810|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473|TIGR00710 NJ56_RS14535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS14540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR023588|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I|Transcription regulator HTH, PurR GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|MF_01277|PF00356|PF13377|PR00036|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS14550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001189|IPR019831|IPR019832|IPR019833 Manganese/iron superoxide dismutase|Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, N-terminal|Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:1.10.287.990|PF00081|PF02777|PIRSF000349|PR01703|PS00088|SSF46609|SSF54719 NJ56_RS14555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000064 Endopeptidase, NLPC/P60 domain G3DSA:3.90.1720.10|PF00877|SSF54001 NJ56_RS14560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002109|IPR004480|IPR012336|IPR014434 Glutaredoxin|Monothiol glutaredoxin|Monothiol glutaredoxin-related|Thioredoxin-like fold GO:0009055|GO:0015035|GO:0015036|GO:0045454 G3DSA:3.40.30.10|PF00462|PIRSF005894|SSF52833|TIGR00365 NJ56_RS14565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005987|IPR012337|IPR013520 Exonuclease, RNase T/DNA polymerase III|Ribonuclease H-like domain|Ribonuclease T GO:0003676|GO:0004540|GO:0006396 G3DSA:3.30.420.10|MF_00157|PF00929|SM00479|SSF53098|TIGR01298 NJ56_RS14570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004360|IPR004361|IPR018146|IPR029068 Glyoxalase I|Glyoxalase I, conserved site|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain GO:0004462|GO:0046872 G3DSA:3.10.180.10|PF00903|PS00934|SSF54593|TIGR00068 NJ56_RS14575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001155|IPR013785 Aldolase-type TIM barrel|NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF00724|SSF51395 NJ56_RS14580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001647|IPR009057|IPR011075 DNA-binding HTH domain, TetR-type|Homeobox domain-like|Tetracycline transcriptional regulator, TetR-related, C-terminal GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PF16925|SSF46689|SSF48498 NJ56_RS14585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000917|IPR012549|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Phosphoethanolamine transferase, N-terminal|Sulfatase, N-terminal GO:0003824|GO:0008152|GO:0008484|GO:0016021 G3DSA:3.40.720.10|PF00884|PF08019|SSF53649 NJ56_RS14590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010710 Protein of unknown function DUF1289 PF06945 NJ56_RS14595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020471|IPR023210 Aldo/keto reductase|NADP-dependent oxidoreductase domain GO:0016491|GO:0055114 G3DSA:3.20.20.100|PF00248|PR00069|SSF51430 NJ56_RS14605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000835|IPR011991|IPR023071|IPR023187 MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Transcriptional regulator, SlyA|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|MF_01819|PF01047|PR00598|PS01117|SM00347|SSF46785 NJ56_RS14610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008816 Glycine zipper 2TM domain GO:0019867 PF05433 NJ56_RS14615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 G3DSA:3.30.420.40|MF_01270|PF03702|SSF53067 NJ56_RS14620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000659|IPR011576|IPR012349|IPR019576|IPR019740 FMN-binding split barrel|Pyridoxamine 5'-phosphate oxidase|Pyridoxamine 5'-phosphate oxidase, conserved site|Pyridoxamine 5'-phosphate oxidase, putative|Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0004733|GO:0008615|GO:0010181|GO:0016638|GO:0048037|GO:0055114 G3DSA:2.30.110.10|MF_01629|PF01243|PF10590|PIRSF000190|PS01064|SSF50475|TIGR00558 NJ56_RS14625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001412|IPR002305|IPR002307|IPR002942|IPR014729|IPR024107 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ic|RNA-binding S4 domain|Rossmann-like alpha/beta/alpha sandwich fold|Tyrosine-tRNA ligase|Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0000166|GO:0003723|GO:0004812|GO:0004831|GO:0005524|GO:0005737|GO:0006418|GO:0006437 G3DSA:1.10.240.10|G3DSA:3.10.290.10|G3DSA:3.40.50.620|MF_02006|PF00579|PF01479|PR01040|PS00178|SM00363|SSF52374|SSF55174|TIGR00234 NJ56_RS14630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004625|IPR013749|IPR023685|IPR029056 Pyridoxal kinase PdxY|Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Pyridoxine kinase|Ribokinase-like GO:0008478|GO:0009443 G3DSA:3.40.1190.20|MF_01639|PF08543|SSF53613|TIGR00687 NJ56_RS14635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004045|IPR004046|IPR010987|IPR012336 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 NJ56_RS14640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020317 Uncharacterised protein family YjbD PD063639|PF11656 NJ56_RS14645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR029033 Histidine phosphatase superfamily G3DSA:3.40.50.1240 NJ56_RS14650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009698 Protein of unknown function DUF1282 PF06930 NJ56_RS14660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001623|IPR002939|IPR008971|IPR018253 Chaperone DnaJ, C-terminal|DnaJ domain|DnaJ domain, conserved site|HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 G3DSA:1.10.287.110|G3DSA:1.20.5.460|G3DSA:2.60.260.20|PF00226|PF01556|PR00625|PS00636|SM00271|SSF46565|SSF49493 NJ56_RS14665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:1.10.1660.10|PF13591 NJ56_RS14670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000109|IPR005279|IPR018456|IPR020846|IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A|Dipeptide/tripeptide permease|Major facilitator superfamily domain|PTR2 family proton/oligopeptide symporter, conserved site|Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0006857|GO:0015197|GO:0015833|GO:0016020 G3DSA:1.20.1250.20|MF_01878|PF00854|PS01023|SSF103473|TIGR00924 NJ56_RS14675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR014358|IPR016040 Enoyl-[acyl-carrier-protein] reductase (NADH)|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR GO:0004318|GO:0006633|GO:0055114 G3DSA:3.40.50.720|PF13561|PIRSF000094|PR00081|SSF51735 NJ56_RS14680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS14685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR013563|IPR027417 AAA+ ATPase domain|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|SM00382|SSF52540|TIGR01727 NJ56_RS14690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR025966 ABC transporter type 1, transmembrane domain MetI-like|Oligopeptide transport permease C-like, N-terminal domain GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 NJ56_RS14695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS14700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000914|IPR023765|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain|Solute-binding protein family 5, conserved site GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PS01040|SSF53850 NJ56_RS14710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 G3DSA:3.90.210.10|PF02917|PR01395|SSF56399 NJ56_RS14720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002078|IPR002197|IPR003593|IPR009057|IPR014317|IPR025943|IPR025944|IPR027417 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|Homeobox domain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|Transcription activator PspF GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00158|PF02954|PR01590|PS00676|PS00688|SM00382|SSF46689|SSF52540|TIGR02974 NJ56_RS14725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007157|IPR014319 Phage shock protein, PspA|PspA/IM30 G3DSA:1.20.5.320|G3DSA:1.20.5.50|PF04012|TIGR02977 NJ56_RS14730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009554 Phage shock protein B GO:0006355|GO:0009271 PF06667|TIGR02976 NJ56_RS14735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007168|IPR014320 Phage shock protein, PspC|Phage shock protein, PspC, N-terminal PF04024|TIGR02978 NJ56_RS14740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014321 Phage shock protein, PspD PF09584|TIGR02979 NJ56_RS14745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007413|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Protein of unknown function DUF463, YcjX-like protein G3DSA:3.40.50.300|PF04317|PIRSF019381|SSF52540 NJ56_RS14750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006507|IPR021147 Protein of unknown function DUF697|Uncharacterised protein family UPF0283 MF_01085|PF05128|TIGR01620 NJ56_RS14755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014914 RES domain PF08808|SM00953 NJ56_RS14760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011979|IPR024467 Conserved hypothetical protein CHP02293|Domain of unknown function DUF2384 PF09722|TIGR02293 NJ56_RS14765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR002078|IPR003593|IPR009057|IPR013767|IPR025662|IPR025943|IPR025944|IPR027417|IPR030828 AAA+ ATPase domain|Homeobox domain-like|P-loop containing nucleoside triphosphate hydrolase|PAS domain|PAS fold|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|TyrR family, helix-turn-helix domain GO:0003677|GO:0005524|GO:0006355|GO:0008134 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.20|G3DSA:3.30.70.260|G3DSA:3.40.50.300|PF00158|PF00989|PS00675|PS00676|PS00688|SM00091|SM00382|SSF46689|SSF52540|SSF55021|SSF55785|TIGR04381 NJ56_RS14770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002065|IPR012336|IPR013740|IPR018219 Putative thiol peroxidase Tpx|Redoxin|Thiol peroxidase conserved site|Thioredoxin-like fold GO:0008379|GO:0016209|GO:0016491|GO:0016684|GO:0055114 G3DSA:3.40.30.10|MF_00269|PF08534|PS01265|SSF52833 NJ56_RS14775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013341|IPR013342|IPR018110|IPR029017|IPR029065 Enolase C-terminal domain-like|Enolase N-terminal domain-like|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain|Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|PS00909|SM00922|SSF51604|SSF54826 NJ56_RS14780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 G3DSA:3.40.630.10|PF00246|SSF53187 NJ56_RS14785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|SSF53850 NJ56_RS14790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 G3DSA:1.20.58.340|G3DSA:3.30.460.20|PF01544|SSF143865|SSF144083 NJ56_RS14795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011063|IPR012089|IPR014729|IPR035107 2-thiocytidine tRNA biosynthesis protein, TtcA|Rossmann-like alpha/beta/alpha sandwich fold|tRNA thiolation protein, TtcA/Ctu1 type|tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal GO:0008033 G3DSA:3.40.50.620|MF_01850|PF01171|PIRSF004976|SSF52402 NJ56_RS14800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002869|IPR002880|IPR009014|IPR011766|IPR011895|IPR017900|IPR019456|IPR019752|IPR029061|IPR033412 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal|Pyruvate-flavodoxin oxidoreductase|Pyruvate-flavodoxin oxidoreductase, EKR domain|Pyruvate-flavodoxin oxidoreductase, central domain|Pyruvate/ketoisovalerate oxidoreductase, catalytic domain|Pyruvate:ferredoxin oxidoreductase, core domain II|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0005506|GO:0008152|GO:0016491|GO:0016903|GO:0022900|GO:0030976|GO:0055114 G3DSA:3.30.70.20|G3DSA:3.40.50.920|G3DSA:3.40.50.970|G3DSA:3.40.920.10|G3DSA:4.10.780.10|PF01558|PF01855|PF02775|PF10371|PF13484|PF17147|PIRSF000159|PS00198|SM00890|SSF52518|SSF52922|SSF53323|SSF54862|TIGR02176 NJ56_RS14805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000390 Small multidrug resistance protein family GO:0016021 PF00893|SSF103481 NJ56_RS14810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PF02308|PR01837 NJ56_RS14815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005590 Protein of unknown function DUF333 PF03891 NJ56_RS14820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005184 Domain of unknown function DUF306, Meta/HslJ PF03724 NJ56_RS14825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006139|IPR006140|IPR016040|IPR029752|IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|PS00065|PS00670|PS00671|SSF51735|SSF52283 NJ56_RS14830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021730 Dicarboxylate transport PF11739 NJ56_RS14835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010499|IPR011256|IPR029441 Bacterial transcription activator, effector binding|Integron-associated effector binding protein|Regulatory factor, effector binding domain G3DSA:3.20.80.10|PF14526|SM00871|SSF55136 NJ56_RS14840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025985 YnbE-like lipoprotein PD052969|PF13617 NJ56_RS14845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008309 Uncharacterised conserved protein UCP025560 PF07027|PIRSF025560 NJ56_RS14850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003680|IPR023048|IPR029039 Flavodoxin-like fold|Flavoprotein-like domain|NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 G3DSA:3.40.50.360|MF_01216|PF02525|SSF52218 NJ56_RS14860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001650|IPR003593|IPR007502|IPR010222|IPR011545|IPR011709|IPR014001|IPR024590|IPR027417 AAA+ ATPase domain|DEAD/DEAH box helicase domain|Domain of unknown function DUF1605|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase-associated domain|P-loop containing nucleoside triphosphate hydrolase|RNA helicase HrpA|RNA helicase HrpA, C-terminal GO:0003676|GO:0004004|GO:0004386|GO:0005524 G3DSA:3.40.50.300|PF00270|PF00271|PF04408|PF07717|PF11898|SM00382|SM00487|SM00490|SM00847|SSF52540|TIGR01967 NJ56_RS14865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001254|IPR008256|IPR009003|IPR018114|IPR033116 Peptidase S1, PA clan|Peptidase S1B|Serine proteases, trypsin domain|Serine proteases, trypsin family, histidine active site|Serine proteases, trypsin family, serine active site GO:0004252|GO:0006508|GO:0008236 G3DSA:2.40.10.10|PF00089|PR00839|PS00134|PS00135|SM00020|SSF50494 NJ56_RS14875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005247|IPR008914 Phosphatidylethanolamine-binding protein|YbhB/YbcL G3DSA:3.90.280.10|PF01161|SSF49777|TIGR00481 NJ56_RS14880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR018060|IPR018062 DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PS00041|SM00342|SSF46689 NJ56_RS14885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 NJ56_RS14890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001424|IPR018152 Superoxide dismutase, copper/zinc binding domain|Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:2.60.40.200|PF00080|PS00087|SSF49329 NJ56_RS14895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003660|IPR003661|IPR004358 HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF02518|PR00344|SM00304|SM00387|SM00388|SSF47384|SSF55874 NJ56_RS14900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 NJ56_RS14910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293|IPR004754 Amino acid antiporter|Amino acid/polyamine transporter I GO:0003333|GO:0006865|GO:0015171|GO:0016020|GO:0016021 PF13520|PIRSF006060|TIGR00905 NJ56_RS14915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010854|IPR025539|IPR025543 Dodecin-like|Domain of unknown function DUF1471|YdgH protein G3DSA:3.30.1660.10|PF07338|PIRSF014774|SSF159871 NJ56_RS14920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007698|IPR007886|IPR008142|IPR008143|IPR016040|IPR024605|IPR026255 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2|NAD(P) transhydrogenase, alpha subunit|NAD(P) transhydrogenase, alpha subunit, C-terminal|NAD(P)-binding domain GO:0008746|GO:0015992|GO:0016491|GO:0055114 G3DSA:3.40.50.720|PF01262|PF05222|PF12769|PIRSF000203|PS00836|PS00837|SM01002|SM01003|SSF51735|SSF52283|TIGR00561 NJ56_RS14925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012136|IPR029035|IPR034300 DHS-like NAD/FAD-binding domain|NADP transhydrogenase beta-like domain|NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 G3DSA:3.40.50.1220|PF02233|PIRSF000204|SSF52467 NJ56_RS14930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004560|IPR013022 L-ribulose-5-phosphate 3-epimerase|Xylose isomerase-like, TIM barrel domain GO:0005975|GO:0016861 G3DSA:3.20.20.150|PF01261|SSF51658|TIGR00542 NJ56_RS14935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001754|IPR011060|IPR013785 Aldolase-type TIM barrel|Orotidine 5'-phosphate decarboxylase domain|Ribulose-phosphate binding barrel GO:0003824|GO:0004590|GO:0006207|GO:0008152 G3DSA:3.20.20.70|PF00215|SM00934|SSF51366 NJ56_RS14940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001303 Class II aldolase/adducin N-terminal G3DSA:3.40.225.10|PF00596|SM01007|SSF53639 NJ56_RS14945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002178|IPR016152 PTS EIIA type-2 domain|Phosphotransferase/anion transporter GO:0005215|GO:0006810 G3DSA:3.40.930.10|PF00359|SSF55804 NJ56_RS14950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003501|IPR004703|IPR017180 Phosphotransferase system component IIBC, sugar-specific, predicted|Phosphotransferase system, EIIB component, type 2/3|Phosphotransferase system, sugar-specific permease component GO:0008982|GO:0009401|GO:0016021 G3DSA:3.40.50.2300|PF02302|PF03611|PIRSF037343|SSF52794 NJ56_RS14955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001034|IPR011991|IPR014036|IPR018356 DeoR C-terminal sensor domain|DeoR-type HTH domain|Transcription regulator, HTH DeoR-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.1360|PF00455|PF08220|PS00894|SM00420|SM01134|SSF100950|SSF46785 NJ56_RS14960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001279 Metallo-beta-lactamase G3DSA:3.60.15.10|PF13483|SSF56281 NJ56_RS14965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|UspA GO:0006950 G3DSA:3.40.50.620|PF00582|SSF52402 NJ56_RS14970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000595|IPR011991|IPR012318|IPR014710|IPR018335|IPR018490 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Transcription regulator HTH, Crp-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PR00034|PS00042|SM00100|SM00419|SSF46785|SSF51206 NJ56_RS14975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001497|IPR008332|IPR011991|IPR014048|IPR023546 Methylated-DNA--protein-cysteine methyltransferase|Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylated-DNA-[protein]-cysteine S-methyltransferase, active site|Methylguanine DNA methyltransferase, ribonuclease-like domain|Winged helix-turn-helix DNA-binding domain GO:0003824|GO:0003908|GO:0006281 G3DSA:1.10.10.10|G3DSA:3.30.160.70|MF_00772|PF01035|PF02870|PS00374|SSF46767|SSF53155|TIGR00589 NJ56_RS14980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010499|IPR011256|IPR024911|IPR029442 Bacterial transcription activator, effector binding|DNA gyrase inhibitor GyrI|GyrI-like small molecule binding domain|Regulatory factor, effector binding domain GO:0008657 G3DSA:3.20.80.10|MF_01896|PF06445|SM00871|SSF55136 NJ56_RS14985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007791|IPR025266|IPR028932|IPR029024 Co-chaperone DjlA, N-terminal|TerB, N-terminal|TerB-C domain|TerB-like G3DSA:1.10.3680.10|PF05099|PF13208|PF15615|SSF158682 NJ56_RS14990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006439|IPR011951|IPR023198|IPR023214 HAD hydrolase, subfamily IA|HAD-like domain|HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB|Phosphoglycolate phosphatase, domain 2 GO:0008152|GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01549|TIGR02254 NJ56_RS15000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016946 Uncharacterised conserved protein UCP030125 G3DSA:2.60.120.620|PIRSF030125 NJ56_RS15005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002129|IPR010977|IPR015421|IPR015422|IPR015424|IPR021115 Aromatic-L-amino-acid decarboxylase|Pyridoxal phosphate-dependent decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|Pyridoxal-phosphate binding site GO:0003824|GO:0006520|GO:0016831|GO:0019752|GO:0030170 G3DSA:1.20.1340.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00282|PR00800|PS00392|SSF53383 NJ56_RS15010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010662|IPR029058 Alpha/Beta hydrolase fold|Putative hydrolase RBBP9/YdeN GO:0016787 G3DSA:3.40.50.1820|PF06821|SSF53474 NJ56_RS15015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017030 Virulence effector, SrfC G3DSA:3.40.50.300|PF10139|PIRSF034586 NJ56_RS15020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009216 Virulence factor SrfB G3DSA:3.30.420.40|PF07520|PIRSF034585|SSF53067 NJ56_RS15030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000845|IPR011271|IPR018953 AMP nucleosidase|AMP nucleoside phosphorylase, N-terminal|Nucleoside phosphorylase domain GO:0003824|GO:0008714|GO:0009116|GO:0044209 G3DSA:3.30.1730.10|G3DSA:3.40.50.1580|MF_01932|PF01048|PF10423|SSF53167|TIGR01717 NJ56_RS15050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007213|IPR029063 Methyltransferase Ppm1/Ppm2/Tcmp|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168|GO:0032259 G3DSA:3.40.50.150|PF04072|SSF53335 NJ56_RS15055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002477|IPR002502 N-acetylmuramoyl-L-alanine amidase domain|Peptidoglycan binding-like GO:0008745|GO:0009253 G3DSA:1.10.101.10|G3DSA:3.40.80.10|PF01510|SM00644|SSF47090|SSF55846 NJ56_RS15060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR016040|IPR020904 NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 NJ56_RS15065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003844 Uncharacterised protein family UPF0060 GO:0016020 MF_00010|PF02694 NJ56_RS15070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009700 Protein of unknown function DUF1283 MF_01581|PD073251|PF06932 NJ56_RS15075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010595 Protein of unknown function DUF1161 PD336997|PF06649 NJ56_RS15080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001807|IPR014743|IPR023790 Chloride channel, core|Chloride channel, voltage gated|Chloride channel, voltage-gated, ClcB GO:0005216|GO:0005247|GO:0006821|GO:0010447|GO:0016020|GO:0055085 G3DSA:1.10.3080.10|MF_01203|PF00654|PR00762|SSF81340 NJ56_RS15085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004472|IPR027417 Dethiobiotin synthase BioD|P-loop containing nucleoside triphosphate hydrolase GO:0000287|GO:0004141|GO:0005524|GO:0009102 G3DSA:3.40.50.300|MF_00336|PF13500|PIRSF006755|SSF52540|TIGR00347 NJ56_RS15090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000600|IPR011991 ROK family|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|G3DSA:3.30.420.40|PF00480|SSF46785|SSF53067 NJ56_RS15095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 G3DSA:3.30.54.10|G3DSA:3.50.14.10|PF05472|SSF56596|TIGR02648 NJ56_RS15100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000362|IPR005677|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083 Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate hydratase, class II|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004333|GO:0006099|GO:0006106|GO:0016829|GO:0045239 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00743|PF00206|PF10415|PR00145|PR00149|PS00163|SSF48557|TIGR00979 NJ56_RS15105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001250|IPR011051|IPR014710|IPR016305|IPR018050 Mannose-6-phosphate isomerase|Mannose-6-phosphate isomerase, type I|Phosphomannose isomerase, type I, conserved site|RmlC-like cupin domain|RmlC-like jelly roll fold GO:0004476|GO:0005975|GO:0008270|GO:0009298 G3DSA:1.10.441.10|G3DSA:2.60.120.10|PF01238|PIRSF001480|PR00714|PS00965|PS00966|SSF51182|TIGR00218 NJ56_RS15110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010352 Protein of unknown function DUF945 PF06097 NJ56_RS15115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001365|IPR006330|IPR006650|IPR028893|IPR032466 Adenosine deaminase|Adenosine/AMP deaminase active site|Adenosine/AMP deaminase domain|Adenosine/adenine deaminase|Metal-dependent hydrolase GO:0004000|GO:0009168|GO:0019239 G3DSA:3.20.20.140|MF_00540|PF00962|PS00485|SSF51556|TIGR01430 NJ56_RS15120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016833 Putative sodium bile acid cotransporter PF13593|PIRSF026166 NJ56_RS15125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000683|IPR004104|IPR016040 NAD(P)-binding domain|Oxidoreductase, C-terminal|Oxidoreductase, N-terminal GO:0008152|GO:0016491|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF01408|PF02894|SSF51735 NJ56_RS15130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004537|IPR014431|IPR014710|IPR015392|IPR015985|IPR029063 Domain of unknown function DUF1971|RmlC-like jelly roll fold|S-adenosyl-L-methionine-dependent methyltransferase|Tellurite resistance methyltransferase TehB-like domain|Tellurite resistance methyltransferase, TehB|Tellurite resistance methyltransferase, TehB type-2 GO:0005737|GO:0008757|GO:0046690 G3DSA:2.60.120.10|G3DSA:3.40.50.150|PF03848|PF09313|PIRSF005215|SSF51197|SSF53335|TIGR00477 NJ56_RS15135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000559|IPR020628|IPR027417 Formate-tetrahydrofolate ligase, FTHFS|Formate-tetrahydrofolate ligase, FTHFS, conserved site|P-loop containing nucleoside triphosphate hydrolase GO:0004329|GO:0005524 G3DSA:3.10.410.10|G3DSA:3.40.50.300|MF_01543|PF01268|PS00722|SSF52540 NJ56_RS15140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019690 Protein of unknown function DUF2569 PF10754 NJ56_RS15145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003667|IPR011293 Electron transport complex, subunit RnfA/RsxA|Rnf-Nqr subunit, membrane protein GO:0016020|GO:0022900 MF_00459|PF02508|PIRSF006102|TIGR01943 NJ56_RS15150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007202|IPR010207|IPR016463|IPR017900 4Fe-4S domain|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Electron transport complex, RnfB/RsxB|Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0009055|GO:0022900|GO:0051536 G3DSA:3.30.70.20|MF_00463|PF04060|PF14697|PIRSF005784|PS00198|SSF54862|TIGR01944 NJ56_RS15155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009051|IPR010208|IPR011538|IPR017896|IPR017900|IPR019554|IPR026902 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Electron transport complex, subunit RnfC/RsxC|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain|RnfC Barrel sandwich hybrid domain|Soluble ligand binding domain GO:0009055|GO:0016020|GO:0051536|GO:0051539 G3DSA:3.30.70.20|MF_00461|PF01512|PF10531|PF13237|PF13375|PS00198|SSF142019|SSF46548|TIGR01945 NJ56_RS15160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR011256|IPR018060|IPR020449|IPR029442 DNA binding HTH domain, AraC-type|GyrI-like small molecule binding domain|Homeobox domain-like|Regulatory factor, effector binding domain|Transcription regulator HTH, AraC- type GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:3.20.80.10|PF06445|PF12833|PR00032|SM00342|SSF46689|SSF55136 NJ56_RS15165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004338|IPR011303 Electron transport complex, subunit RnfD/RsxD|NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020|GO:0016021|GO:0022900 MF_00462|PF03116|TIGR01946 NJ56_RS15170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007329|IPR010209 Electron transport complex, subunit RnfG/RsxG|FMN-binding GO:0005886|GO:0009055|GO:0010181|GO:0016020|GO:0022900 MF_00479|PF04205|PIRSF006091|SM00900|TIGR01947 NJ56_RS15175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003667|IPR010968 Electron transport complex, RsxE|Rnf-Nqr subunit, membrane protein GO:0016020|GO:0022900 MF_00478|PF02508|PIRSF006102|TIGR01948 NJ56_RS15180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000445|IPR003265|IPR003651|IPR004035|IPR004036|IPR005759|IPR011257|IPR023170 DNA glycosylase|Endonuclease III|Endonuclease III, iron-sulphur binding site|Endonuclease III-like, conserved site-2|Endonuclease III-like, iron-sulphur cluster loop motif|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain GO:0003677|GO:0003824|GO:0003906|GO:0006281|GO:0006284|GO:0051539 G3DSA:1.10.1670.10|G3DSA:1.10.340.30|MF_00942|PF00633|PF00730|PF10576|PIRSF001435|PS00764|PS01155|SM00478|SM00525|SSF48150|TIGR01083 NJ56_RS15185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003029|IPR004476|IPR011129|IPR011804|IPR012340|IPR013223|IPR022966 Cold shock domain|Nucleic acid-binding, OB-fold|Ribonuclease B, N-terminal OB domain|Ribonuclease II|Ribonuclease II/R, conserved site|Ribonuclease II/ribonuclease R|S1 domain GO:0003676|GO:0003723|GO:0004540|GO:0006401|GO:0008859|GO:0016070 G3DSA:2.40.50.140|MF_01036|PF00575|PF00773|PF08206|PS01175|SM00357|SM00955|SSF50249|TIGR00358|TIGR02062 NJ56_RS15190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR000160|IPR001610|IPR003018|IPR013655|IPR013656|IPR029016|IPR029787 GAF domain|GAF domain-like|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS fold-3|PAS fold-4 GO:0005515 G3DSA:3.30.450.20|G3DSA:3.30.450.40|G3DSA:3.30.70.270|PF00990|PF01590|PF08447|PF08448|SM00065|SM00086|SM00091|SM00267|SSF55073|SSF55781|SSF55785|TIGR00229|TIGR00254 NJ56_RS15195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001585|IPR004731|IPR013785|IPR018225 Aldolase-type TIM barrel|Transaldolase type 3B/Fructose-6-phosphate aldolase|Transaldolase, active site|Transaldolase/Fructose-6-phosphate aldolase GO:0003824|GO:0005975 G3DSA:3.20.20.70|PF00923|PS00958|PS01054|SSF51569|TIGR00875 NJ56_RS15200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008816 Glycine zipper 2TM domain GO:0019867 PF05433 NJ56_RS15205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001950|IPR005872 Archaeal/bacterial translation initiation factor SUI1|SUI1 domain GO:0003743|GO:0006413 G3DSA:3.30.780.10|PF01253|PIRSF037511|SSF55159|TIGR01158 NJ56_RS15210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001754|IPR011060|IPR013785|IPR014732|IPR018089 Aldolase-type TIM barrel|Orotidine 5'-phosphate decarboxylase|Orotidine 5'-phosphate decarboxylase domain|Orotidine 5'-phosphate decarboxylase, active site|Ribulose-phosphate binding barrel GO:0003824|GO:0004590|GO:0006207|GO:0008152|GO:0044205 G3DSA:3.20.20.70|MF_01200_B|PF00215|PS00156|SM00934|SSF51366|TIGR01740 NJ56_RS15215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010854|IPR025543 Dodecin-like|Domain of unknown function DUF1471 G3DSA:3.30.1660.10|PF07338|SSF159871 NJ56_RS15220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010985|IPR013321 Arc-type ribbon-helix-helix|Ribbon-helix-helix GO:0006355 G3DSA:1.10.1220.10|SSF47598 NJ56_RS15225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR019734|IPR030865 Lipopolysaccharide assembly protein B|Tetratricopeptide repeat|Tetratricopeptide-like helical domain GO:0005515|GO:0008653 G3DSA:1.25.40.10|MF_00994|PF13176|PF13432|SM00028|SSF48452 NJ56_RS15230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010445|IPR032906 Lipopolysaccharide assembly protein A|Lipopolysaccharide assembly protein A domain GO:0005886|GO:0005887|GO:0008653 MF_01948|PF06305 NJ56_RS15235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase G3DSA:1.20.144.10|PF01569|SM00014|SSF48317 NJ56_RS15240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000926|IPR032677 GTP cyclohydrolase II|GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 MF_00179|PF00925|SSF142695|TIGR00505 NJ56_RS15245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000573|IPR001030|IPR006249|IPR015928|IPR015931|IPR015932|IPR018136 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase family, 4Fe-4S cluster binding site|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/Iron-responsive element-binding protein 2 GO:0008152 G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF00694|PR00415|PS00450|PS01244|SSF52016|SSF53732|TIGR01341 NJ56_RS15260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS15265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003601|IPR003602|IPR005733|IPR006171|IPR013263|IPR013497|IPR013498|IPR013825|IPR023405|IPR023406|IPR028612 DNA topoisomerase I, bacterial-type|DNA topoisomerase I, type IA|DNA topoisomerase I, zinc ribbon-like, bacterial-type|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|DNA topoisomerase, type IA, zn finger|TOPRIM domain GO:0003677|GO:0003916|GO:0003917|GO:0005694|GO:0006265 G3DSA:1.10.460.10|G3DSA:2.20.25.10|G3DSA:2.70.20.10|G3DSA:3.30.65.10|G3DSA:3.40.50.140|MF_00952|PF01131|PF01396|PF01751|PF08272|PR00417|PS00396|SM00436|SM00437|SM00493|SSF56712|SSF57783|TIGR01051 NJ56_RS15275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019633 Protein of unknown function DUF2498 PF10692 NJ56_RS15280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002142|IPR013703|IPR029045 ClpP/crotonase-like domain|Peptidase S49|Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886|GO:0006508|GO:0008233 G3DSA:3.90.226.10|PF01343|PF08496|SSF52096 NJ56_RS15285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR016040|IPR020904 NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00081|PS00061|SM00822|SSF51735 NJ56_RS15290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003724|IPR025826|IPR027417 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR|Cob(I)alamin adenosyltransferase N-terminal domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0008817|GO:0009236 G3DSA:3.40.50.300|PF02572|PF12557|PIRSF015617|SSF52540|TIGR00708 NJ56_RS15295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000748|IPR002942|IPR006145|IPR018496|IPR020103 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.10.290.10|G3DSA:3.30.70.1560|G3DSA:3.30.70.580|PF00849|PF01479|PS01149|SM00363|SSF55120|SSF55174|TIGR00093 NJ56_RS15300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006070|IPR017945 DHBP synthase RibB-like alpha/beta domain|YrdC-like domain GO:0003725 G3DSA:3.90.870.10|PF01300|SSF55821|TIGR00057 NJ56_RS15305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003141|IPR004013|IPR016195 PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like GO:0003824 G3DSA:3.20.20.140|PF02811|SM00481|SSF89550 NJ56_RS15310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005257|IPR005801|IPR006805|IPR015890|IPR019999 ADC synthase|Anthranilate synthase component I, N-terminal|Anthranilate synthase component I, TrpE-like, bacterial|Anthranilate synthase component I-like|Chorismate-utilising enzyme, C-terminal GO:0004049|GO:0009058 G3DSA:3.60.120.10|PF00425|PF04715|PIRSF001373|PR00095|SSF56322|TIGR00565 NJ56_RS15315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006221|IPR017926|IPR029062 Anthranilate synthase/para-aminobenzoate synthase like domain|Class I glutamine amidotransferase-like|Glutamine amidotransferase GO:0008152 G3DSA:3.40.50.880|PF00117|PR00096|PR00097|PR00099|SSF52317|TIGR00566 NJ56_RS15320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000312|IPR005940|IPR017459 Anthranilate phosphoribosyl transferase|Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase, family 3 GO:0000162|GO:0004048|GO:0008152|GO:0016757 G3DSA:1.20.970.10|G3DSA:3.40.1030.10|MF_00211|PF00591|PF02885|SSF47648|SSF52418|TIGR01245 NJ56_RS15325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001240|IPR001468|IPR011060|IPR013785|IPR013798 Aldolase-type TIM barrel|Indole-3-glycerol phosphate synthase|Indole-3-glycerol phosphate synthase, conserved site|N-(5'phosphoribosyl) anthranilate isomerase (PRAI)|Ribulose-phosphate binding barrel GO:0003824|GO:0004425|GO:0004640|GO:0006568|GO:0008152 G3DSA:3.20.20.70|MF_00134_B|MF_00135|PF00218|PF00697|PS00614|SSF51366 NJ56_RS15330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001926|IPR006653|IPR006654|IPR023026 Tryptophan synthase beta chain/beta chain-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme|Tryptophan synthase, beta chain|Tryptophan synthase, beta chain, conserved site GO:0000162|GO:0004834|GO:0006568 G3DSA:3.40.50.1100|MF_00133|PF00291|PIRSF001413|PS00168|SSF53686|TIGR00263 NJ56_RS15335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002028|IPR011060|IPR013785|IPR018204 Aldolase-type TIM barrel|Ribulose-phosphate binding barrel|Tryptophan synthase, alpha chain|Tryptophan synthase, alpha chain, active site GO:0003824|GO:0004834|GO:0006568|GO:0008152 G3DSA:3.20.20.70|MF_00131|PF00290|PS00167|SSF51366|TIGR00262 NJ56_RS15340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 NJ56_RS15345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000758|IPR005618|IPR011250 Outer membrane protein, OmpW|Outer membrane protein/outer membrane enzyme PagP, beta-barrel|Virulence-related outer membrane protein GO:0009279|GO:0016021|GO:0019867 G3DSA:2.40.160.20|PF03922|PS00695|SSF56925 NJ56_RS15350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005358 Putative zinc- or iron-chelating domain containing protein PF03692 NJ56_RS15355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009627 Uncharacterised protein family UPF0259 MF_01067|PF06790 NJ56_RS15360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002645|IPR011547 SLC26A/SulP transporter domain|STAS domain GO:0008272|GO:0015116|GO:0016021 G3DSA:3.30.750.24|PF00916|PF01740|SSF52091 NJ56_RS15365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006008 Intracellular septation protein A GO:0016021 MF_00189|PF04279|TIGR00997 NJ56_RS15370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006683|IPR029069 HotDog domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 NJ56_RS15375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003538|IPR006260 Gram-negative bacterial TonB protein|TonB, C-terminal GO:0006810|GO:0015343|GO:0015891|GO:0030288|GO:0031992 G3DSA:3.30.2420.10|PF03544|PF16031|PR01374|SSF74653|TIGR01352 NJ56_RS15380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR011991|IPR016032 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00196|PR00038|PS00622|SM00421|SSF46894 NJ56_RS15390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008394|IPR008966 Adhesion domain|Enterobacteria AfaD invasin PF05775|SSF49401 NJ56_RS15395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000015|IPR018030|IPR025885|IPR025949 Fimbrial membrane usher, conserved site|Outer membrane usher protein|PapC, N-terminal domain|PapC-like, C-terminal domain GO:0005215|GO:0005515|GO:0006810|GO:0016020 PF00577|PF13953|PF13954|PS01151|SSF141729 NJ56_RS15400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001829|IPR008962|IPR013783|IPR016147|IPR016148 Immunoglobulin-like fold|PapD-like|Pili assembly chaperone, C-terminal|Pili assembly chaperone, N-terminal|Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077|GO:0071555 G3DSA:2.60.40.10|PF00345|PF02753|PR00969|SSF49354|SSF49584 NJ56_RS15410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001867|IPR011991|IPR016032 OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00486|SM00862|SSF46894 NJ56_RS15415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031854 Putative membrane protein FidL-like PF15941 NJ56_RS15425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005545|IPR011008 Dimeric alpha-beta barrel|YCII-related G3DSA:3.30.70.1060|PF03795|SSF54909 NJ56_RS15430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027392 Transcription factor zinc-finger PF13453 NJ56_RS15445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001736|IPR022924|IPR025202|IPR027379|IPR030840 Cardiolipin synthase|Cardiolipin synthase A|Cardiolipin synthase N-terminal|Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824|GO:0008808|GO:0016780|GO:0032049 G3DSA:3.30.870.10|MF_00190|PF13091|PF13396|SM00155|SSF56024|TIGR04265 NJ56_RS15450 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007376 dsDNA mimic, putative G3DSA:3.10.450.140|MF_00680|PD020447|PF04269|PIRSF004916|SSF102816 NJ56_RS15455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 NJ56_RS15460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 NJ56_RS15465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR025966 ABC transporter type 1, transmembrane domain MetI-like|Oligopeptide transport permease C-like, N-terminal domain GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 NJ56_RS15470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS15475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000914|IPR023765|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain|Solute-binding protein family 5, conserved site GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PS01040|SSF53850 NJ56_RS15480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|SSF53850 NJ56_RS15490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PF01914|TIGR00427 NJ56_RS15500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001670|IPR012079|IPR015590|IPR016161|IPR016162|IPR018211 Alcohol dehydrogenase, iron-type|Alcohol dehydrogenase, iron-type, conserved site|Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde/histidinol dehydrogenase|Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008152|GO:0008774|GO:0015976|GO:0016491|GO:0046872|GO:0055114 G3DSA:1.20.1090.10|G3DSA:3.40.309.10|G3DSA:3.40.50.1970|G3DSA:3.40.605.10|PF00171|PF00465|PIRSF000111|PS00060|PS00913|SSF53720|SSF56796 NJ56_RS15505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001267|IPR020633|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Thymidine kinase|Thymidine kinase, conserved site GO:0004797|GO:0005524 G3DSA:3.30.60.20|G3DSA:3.40.50.300|MF_00124|PF00265|PIRSF035805|PS00603|SSF52540|SSF57716 NJ56_RS15510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001801|IPR027444|IPR027454 Histone-like protein H-NS|Histone-like protein H-NS family, oligomerisation domain|Histone-like protein H-NS, C-terminal domain GO:0003677|GO:0005622|GO:0006355|GO:0046983 G3DSA:1.10.287.1050|G3DSA:4.10.430.10|PF00816|PIRSF002096|SM00528|SSF81273 NJ56_RS15515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001732|IPR008927|IPR014026|IPR014027|IPR016040|IPR017476|IPR028357 6-phosphogluconate dehydrogenase C-terminal domain-like|NAD(P)-binding domain|UDP-glucose 6-dehydrogenase, bacterial type|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0000271|GO:0003979|GO:0016616|GO:0051287|GO:0055114 G3DSA:1.20.5.170|G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500134|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026 NJ56_RS15520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR011006|IPR028616 CheY-like superfamily|Regulator of RpoS|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.2300|MF_00958|PF00072|SM00448|SSF52172 NJ56_RS15525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629|GO:0008152 G3DSA:3.40.1090.10|PF01734|SSF52151 NJ56_RS15530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004027|IPR023006|IPR032710 NTF2-like domain|SEC-C motif|Uncharacterised protein family UPF0225 G3DSA:3.10.450.50|MF_00612|PF02810|SSF103642|SSF54427 NJ56_RS15535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002376|IPR002912|IPR004810 ACT domain|Formyl transferase, N-terminal|Formyltetrahydrofolate deformylase GO:0006189|GO:0008864|GO:0009058|GO:0016742 G3DSA:3.30.70.260|G3DSA:3.40.50.170|MF_01927|PF00551|PF01842|PIRSF036480|PR01575|SSF53328|SSF55021|TIGR00655 NJ56_RS15555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR011991 Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF00126|SSF46785 NJ56_RS15560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002196|IPR023346|IPR023347 Glycoside hydrolase, family 24|Lysozyme domain|Lysozyme-like domain GO:0003796|GO:0009253|GO:0016998 G3DSA:1.10.530.40|PF00959|SSF53955 NJ56_RS15565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004808|IPR005135|IPR020847 AP endonuclease 1|AP endonuclease 1, binding site|Endonuclease/exonuclease/phosphatase GO:0003677|GO:0004518|GO:0004519|GO:0005622|GO:0006281 G3DSA:3.60.10.10|PF03372|PS00726|SSF56219|TIGR00195|TIGR00633 NJ56_RS15570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR015797|IPR020476 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase domain-like GO:0016787 G3DSA:3.90.79.10|PF00293|PR00502|SSF55811 NJ56_RS15575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009971 Protein of unknown function DUF1496 PF07383 NJ56_RS15580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003601|IPR003602|IPR005738|IPR006171|IPR013497|IPR013825|IPR023405|IPR023406 DNA topoisomerase III|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|TOPRIM domain GO:0003677|GO:0003916|GO:0003917|GO:0006265 G3DSA:1.10.460.10|G3DSA:2.70.20.10|G3DSA:3.40.50.140|MF_00953|PF01131|PF01751|PR00417|PS00396|SM00436|SM00437|SM00493|SSF56712|TIGR01056 NJ56_RS15585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004536|IPR010918|IPR016188|IPR023061 AIR synthase-related protein, C-terminal domain|PurM-like, N-terminal domain|Selenophosphate synthetase|Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_00625|PF00586|PF02769|PIRSF036407|SSF55326|SSF56042|TIGR00476 NJ56_RS15590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000415|IPR026021|IPR029479 Nitroreductase|Nitroreductase-like|Putative NAD(P)H nitroreductase YdjA-like GO:0016491 G3DSA:3.40.109.10|PF00881|PIRSF000232|SSF55469 NJ56_RS15595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002142|IPR004634|IPR004635|IPR029045 ClpP/crotonase-like domain|Peptidase S49|Peptidase S49, SppA|Peptidase S49, protease IV GO:0006465|GO:0006508|GO:0008233|GO:0016021 G3DSA:3.90.226.10|PF01343|PIRSF001217|SSF52096|TIGR00705|TIGR00706 NJ56_RS15600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006033|IPR006034|IPR020827|IPR027473|IPR027474|IPR027475 Asparaginase/glutaminase, active site 1|Asparaginase/glutaminase, active site 2|Asparaginase/glutaminase-like|L-asparaginase, C-terminal domain|L-asparaginase, N-terminal|L-asparaginase, type I GO:0004067|GO:0006520 G3DSA:3.40.50.1170|G3DSA:3.40.50.40|PF00710|PIRSF001220|PIRSF500176|PR00139|PS00144|PS00917|SM00870|SSF53774|TIGR00519 NJ56_RS15605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000868 Isochorismatase-like GO:0003824|GO:0008152 G3DSA:3.40.50.850|PF00857|SSF52499 NJ56_RS15610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009749 Protein of unknown function DUF1315 PF07023 NJ56_RS15615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002579|IPR011057 Mss4-like|Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 G3DSA:2.170.150.20|MF_01400|PF01641|SSF51316|TIGR00357 NJ56_RS15620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006424|IPR016040|IPR020828|IPR020829|IPR020830|IPR020831 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain|Glyceraldehyde 3-phosphate dehydrogenase, active site|Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain|Glyceraldehyde-3-phosphate dehydrogenase, type I|Glyceraldehyde/Erythrose phosphate dehydrogenase family|NAD(P)-binding domain GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF00044|PF02800|PIRSF000149|PR00078|PS00071|SM00846|SSF51735|SSF55347|TIGR01534 NJ56_RS15625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008183|IPR011013|IPR014718|IPR025532 Aldose 1-/Glucose-6-phosphate 1-epimerase|Galactose mutarotase-like domain|Glucose-6-phosphate 1-epimerase|Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0016853|GO:0030246 G3DSA:2.70.98.10|PF01263|PIRSF016020|SSF74650 NJ56_RS15630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000917|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Sulfatase, N-terminal GO:0003824|GO:0008152|GO:0008484 G3DSA:3.40.720.10|PF00884|SSF53649 NJ56_RS15640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010583|IPR011250 MltA-interacting MipA|Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 G3DSA:2.40.160.20|PF06629 NJ56_RS15650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010650|IPR013153|IPR016230|IPR027417 P-loop containing nucleoside triphosphate hydrolase|PrkA AAA domain|PrkA C-terminal domain|Serine-protein kinase, PrkA GO:0004672 G3DSA:3.40.50.300|PF06798|PF08298|PIRSF000549|SM00763|SSF52540 NJ56_RS15655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006698 Uncharacterised protein family UPF0229 MF_01232|PF04285 NJ56_RS15660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000399|IPR011766|IPR012000|IPR012001|IPR012782|IPR029035|IPR029061 Acetolactate synthase, catabolic|DHS-like NAD/FAD-binding domain|TPP-binding enzyme, conserved site|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0003984|GO:0030976|GO:0034077 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|PS00187|SSF52467|SSF52518|TIGR02418 NJ56_RS15665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 G3DSA:3.30.1330.80|PF03306|PIRSF001332|SSF117856|TIGR01252 NJ56_RS15670 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS15675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR003018|IPR012226|IPR013655|IPR029016|IPR029787 Diguanylate cyclase/phosphodiesterase|EAL domain|GAF domain|GAF domain-like|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS fold-3 GO:0005515 G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.450.40|G3DSA:3.30.70.270|G3DSA:3.40.50.10600|PF00563|PF00990|PF08447|PF13185|PF13426|PIRSF005925|SM00052|SM00065|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55781|SSF55785|TIGR00229|TIGR00254 NJ56_RS15685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001958|IPR004812|IPR005829|IPR011701|IPR020846 Drug resistance transporter Bcr/CmlA subfamily|Major facilitator superfamily|Major facilitator superfamily domain|Sugar transporter, conserved site|Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215|GO:0006810|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PR01035|PS00216|SSF103473|TIGR00710 NJ56_RS15690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000821|IPR001608|IPR009006|IPR011079|IPR020622|IPR029066 Alanine racemase|Alanine racemase, C-terminal|Alanine racemase, N-terminal|Alanine racemase, pyridoxal-phosphate attachment site|Alanine racemase/group IV decarboxylase, C-terminal|PLP-binding barrel GO:0003824|GO:0006522|GO:0008784 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_01201|PF00842|PF01168|PR00992|PS00395|SM01005|SSF50621|SSF51419|TIGR00492 NJ56_RS15695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006076|IPR023080|IPR023753 D-amino acid dehydrogenase DadA|FAD dependent oxidoreductase|FAD/NAD(P)-binding domain GO:0008718|GO:0016491|GO:0019478|GO:0055114 G3DSA:3.50.50.60|MF_01202|PF01266|SSF51905|SSF54373 NJ56_RS15700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007390 Sporulation stage V, protein R PF04293 NJ56_RS15705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000524|IPR008920|IPR011991|IPR014178|IPR028374 FadR, C-terminal domain|Fatty acid response transcription factor FadR|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain GO:0000062|GO:0003677|GO:0003700|GO:0006355|GO:0019217 G3DSA:1.10.10.10|G3DSA:1.20.120.530|MF_00696|PF00392|PF07840|PR00035|SM00345|SSF46785|SSF48008|TIGR02812 NJ56_RS15710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 MF_01599|PF06450|TIGR00774 NJ56_RS15715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003752|IPR022920|IPR023380 Disulphide bond formation protein DsbB|Disulphide bond formation protein DsbB-like domain|Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 G3DSA:1.20.1550.10|MF_00286|PF02600|SSF158442 NJ56_RS15730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005358|IPR008228 Putative zinc- or iron-chelating domain containing protein|Uncharacterised conserved protein UCP006173 MF_00676|PF03692|PIRSF006173 NJ56_RS15735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 G3DSA:3.90.850.10|PF01557|SSF56529 NJ56_RS15740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR027354 YcgL domain MF_01866|PD030374|PF05166|SSF160191 NJ56_RS15745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005526|IPR007874|IPR013033 Septum formation inhibitor MinC|Septum formation inhibitor MinC, C-terminal|Septum formation inhibitor MinC, N-terminal GO:0000902|GO:0051302|GO:0051726|GO:1901891 G3DSA:2.160.20.70|MF_00267|PF03775|PF05209|SSF63848|TIGR01222 NJ56_RS15750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002586|IPR010223|IPR025501|IPR027417 ATP binding protein MinD|ATP binding protein MinD, bacterial-type|CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0016887 G3DSA:3.40.50.300|PF01656|PIRSF003092|SSF52540|TIGR01968 NJ56_RS15755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 G3DSA:3.30.1070.10|MF_00262|PF03776|SSF55229|TIGR01215 NJ56_RS15760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002121|IPR002562|IPR006292|IPR010997|IPR012337 3'-5' exonuclease domain|HRDC domain|HRDC-like|Ribonuclease D|Ribonuclease H-like domain GO:0000166|GO:0003676|GO:0003824|GO:0005622|GO:0006139|GO:0008033|GO:0008408|GO:0033890|GO:0044237 G3DSA:1.10.150.80|G3DSA:3.30.420.10|MF_01899|PF00570|PF01612|SM00341|SM00474|SSF47819|SSF53098|TIGR01388 NJ56_RS15765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824|GO:0008152 G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|SSF56801 NJ56_RS15770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004658 Outer membrane lipoprotein Slp GO:0019867 PF03843|PIRSF004982|TIGR00752 NJ56_RS15775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000905|IPR022496 Gcp-like domain|tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 G3DSA:3.30.420.40|PF00814|SSF53067|TIGR03725 NJ56_RS15780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006555|IPR010614|IPR027417 ATP-dependent helicase, C-terminal|DEAD2|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006139|GO:0008026|GO:0016818 G3DSA:3.40.50.300|PF06733|PF13307|SM00491|SSF52540 NJ56_RS15785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006175|IPR013813|IPR019897 Endoribonuclease L-PSP/chorismate mutase-like|RidA, conserved site|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|PS01094|SSF55298 NJ56_RS15790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000390|IPR023737 Small multidrug resistance protein family|Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848|GO:0016021 MF_01597|PF00893|SSF103481 NJ56_RS15795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000390|IPR023740 Small multidrug resistance protein family|Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848|GO:0016021 MF_01598|PF00893|SSF103481 NJ56_RS15800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000887|IPR013785|IPR031337|IPR031338 Aldolase-type TIM barrel|KDPG/KHG aldolase|KDPG/KHG aldolase, active site 1|KDPG/KHG aldolase, active site 2 GO:0003824|GO:0008152|GO:0016829 G3DSA:3.20.20.70|PF01081|PS00159|PS00160|SSF51569|TIGR01182 NJ56_RS15805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001282|IPR016040|IPR019796|IPR022674|IPR022675 Glucose-6-phosphate dehydrogenase|Glucose-6-phosphate dehydrogenase, C-terminal|Glucose-6-phosphate dehydrogenase, NAD-binding|Glucose-6-phosphate dehydrogenase, active site|NAD(P)-binding domain GO:0004345|GO:0006006|GO:0050661|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_00966|PF00479|PF02781|PIRSF000110|PR00079|PS00069|SSF51735|SSF55347|TIGR00871 NJ56_RS15810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000281|IPR001347|IPR009057|IPR011991 Helix-turn-helix protein RpiR|Homeobox domain-like|Sugar isomerase (SIS)|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|SSF46689|SSF53697 NJ56_RS15815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001697|IPR011037|IPR015793|IPR015795|IPR015813|IPR018209 Pyruvate kinase|Pyruvate kinase, C-terminal|Pyruvate kinase, active site|Pyruvate kinase, barrel|Pyruvate kinase-like, insert domain|Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0000287|GO:0003824|GO:0004743|GO:0006096|GO:0030955 G3DSA:2.40.33.10|G3DSA:3.20.20.60|G3DSA:3.40.1380.20|PF00224|PF02887|PR01050|PS00110|SSF50800|SSF51621|SSF52935|TIGR01064 NJ56_RS15820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004960|IPR011921 Bacterial lipid A biosynthesis acyltransferase|Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016740|GO:0016747 MF_01944|PF03279|PIRSF026649|TIGR02208 NJ56_RS15825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007340|IPR011055|IPR013731|IPR016047|IPR018392 Duplicated hybrid motif|LysM domain|Opacity-associated protein A|Opacity-associated protein A, N-terminal|Peptidase M23 G3DSA:2.70.70.10|G3DSA:3.10.350.10|PF01551|PF04225|PF08525|SM00257|SSF51261 NJ56_RS15830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 G3DSA:3.40.50.1980|PF01297|SSF53807 NJ56_RS15835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 NJ56_RS15840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001626|IPR029022|IPR035568 ABC transporter, BtuC-like|ABC transporter, FecCD/TroCD-like|ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 G3DSA:1.10.3470.10|PF00950|SSF81345 NJ56_RS15845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000109|IPR005279|IPR018456|IPR020846|IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B|Dipeptide/tripeptide permease|Major facilitator superfamily domain|PTR2 family proton/oligopeptide symporter, conserved site|Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0006857|GO:0015197|GO:0015833|GO:0016020 G3DSA:1.20.1250.20|MF_01879|PF00854|PS01023|SSF103473|TIGR00924 NJ56_RS15850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR004605|IPR008823|IPR008824|IPR011991|IPR027417 AAA+ ATPase domain|DNA helicase, Holliday junction RuvB type|DNA helicase, Holliday junction RuvB type, C-terminal|Holliday junction DNA helicase ruvB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 G3DSA:1.10.10.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00016|PD005323|PF05491|PF05496|SM00382|SSF46785|SSF52540|TIGR00635 NJ56_RS15855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000085|IPR003583|IPR010994|IPR011114|IPR012340|IPR013849 Bacterial DNA recombination protein RuvA|DNA helicase, Holliday junction RuvA type, domain I, bacterial|Helix-hairpin-helix DNA-binding motif, class 1|Holliday junction DNA helicase RuvA, C-terminal|Nucleic acid-binding, OB-fold|RuvA domain 2-like GO:0003677|GO:0003678|GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 G3DSA:1.10.150.20|G3DSA:1.10.150.280|G3DSA:1.10.8.10|G3DSA:2.40.50.140|MF_00031|PF01330|PF07499|PF14520|SM00278|SSF46929|SSF47781|SSF50249|TIGR00084 NJ56_RS15860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002176|IPR012337|IPR020563 Crossover junction endodeoxyribonuclease RuvC|Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site|Ribonuclease H-like domain GO:0003676|GO:0004520|GO:0006281|GO:0006310|GO:0008821 G3DSA:3.30.420.10|MF_00034|PF02075|PR00696|PS01321|SSF53098|TIGR00228 NJ56_RS15865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002876|IPR017856|IPR026564|IPR029072 Integrase, N-terminal zinc-binding domain-like|Transcriptional regulator TACO1-like|Transcriptional regulator TACO1-like, domain 3|YebC-like G3DSA:1.10.10.200|G3DSA:3.30.70.980|MF_00693|PF01709|SSF75625|TIGR01033 NJ56_RS15870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR003564|IPR015797|IPR020084 Dihydroneopterin triphosphate diphosphatase|NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site GO:0008828|GO:0016787|GO:0019177|GO:0046656 G3DSA:3.90.79.10|PF00293|PR01404|PS00893|SSF55811 NJ56_RS15875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002312|IPR004115|IPR004364|IPR004365|IPR004524|IPR012340|IPR029351 Aminoacyl-tRNA synthetase, class II (D/K/N)|Aspartate-tRNA ligase, type 1|Aspartyl/Asparaginyl-tRNA synthetase, class IIb|GAD domain|GAD-like domain|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0005524|GO:0005737|GO:0006418|GO:0016874 G3DSA:2.40.50.140|G3DSA:3.30.930.10|MF_00044|PF00152|PF01336|PF02938|PR01042|SSF50249|SSF55261|SSF55681|TIGR00459 NJ56_RS15880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain PF09723|SM00834|TIGR02605 NJ56_RS15885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002763 Protein of unknown function DUF72 G3DSA:3.20.20.410|PF01904|SSF117396 NJ56_RS15890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001129|IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain|Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein G3DSA:1.20.120.550|PF01124|SSF161084 NJ56_RS15895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005271|IPR029063 Carboxy-S-adenosyl-L-methionine synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0002098 G3DSA:3.40.50.150|MF_01589|PF13649|PIRSF006325|SSF53335|TIGR00740 NJ56_RS15900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010017|IPR027555|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|tRNA (mo5U34)-methyltransferase-like|tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 G3DSA:3.40.50.150|MF_01590|PF08003|SSF53335|TIGR00452 NJ56_RS15905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005627|IPR023648 Copper homeostasis CutC domain|Copper homeostasis protein CutC GO:0005507|GO:0055070 G3DSA:3.20.20.380|MF_00795|PF03932|SSF110395 NJ56_RS15910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010393|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Protein of unknown function DUF991 G3DSA:3.10.180.10|PF06185|SSF54593 NJ56_RS15915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001278|IPR001412|IPR005148|IPR008909|IPR009080|IPR014729|IPR035684 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Arginine-tRNA ligase|Arginyl tRNA synthetase N-terminal domain|Arginyl-tRNA synthetase, catalytic core domain|DALR anticodon binding|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0004814|GO:0005524|GO:0005737|GO:0006418|GO:0006420 G3DSA:1.10.730.10|G3DSA:3.30.1360.70|G3DSA:3.40.50.620|MF_00123|PF00750|PF03485|PF05746|PR01038|PS00178|SM00836|SM01016|SSF47323|SSF52374|SSF55190|TIGR00456 NJ56_RS15920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022231 Protein of unknown function DUF3757 PF12582 NJ56_RS15925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008638|IPR011050|IPR012334|IPR025157 Filamentous haemagglutinin, N-terminal|Hemagglutinin repeat|Pectin lyase fold|Pectin lyase fold/virulence factor G3DSA:2.160.20.10|PF05860|PF13332|SM00912|SSF51126|TIGR01901 NJ56_RS15930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005565|IPR013686|IPR027282|IPR035251 Haemolysin activator HlyB, C-terminal|Polypeptide-transport-associated, ShlB-type|ShlB, POTRA domain|Two partner secretion pathway transporter GO:0015031 G3DSA:2.40.160.50|G3DSA:3.10.20.310|PF03865|PF08479|PF17287|PIRSF029745 NJ56_RS15935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004268 Peptidoglycan biosynthesis protein MurJ MF_02078|PF03023|PIRSF002869|PR01806|TIGR01695 NJ56_RS15940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000683|IPR016040 NAD(P)-binding domain|Oxidoreductase, N-terminal GO:0016491 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF01408|SSF51735|SSF55347 NJ56_RS15945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007432|IPR011991 Protein of unknown function DUF480|Winged helix-turn-helix DNA-binding domain G3DSA:1.10.10.10|MF_01584|PF04337|SSF46785 NJ56_RS15950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain GO:0008080 G3DSA:3.40.630.30|PF13302|SSF55729 NJ56_RS15955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846|IPR022855 Major facilitator superfamily|Major facilitator superfamily domain|Multidrug resistance protein MdtH GO:0016021|GO:0055085 G3DSA:1.20.1250.20|MF_01529|PF07690|SSF103473 NJ56_RS15960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007138|IPR011008 Antibiotic biosynthesis monooxygenase domain|Dimeric alpha-beta barrel G3DSA:3.30.70.100|PF03992|SSF54909 NJ56_RS15965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010835 Protein of unknown function DUF1439 PF07273 NJ56_RS15970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020945|IPR026269 DMSO/Nitrate reductase chaperone|Tat proofreading chaperone DmsD-type G3DSA:1.10.3480.10|PF02613|PIRSF004690|SSF89155 NJ56_RS15975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003141|IPR004013|IPR016195|IPR023710 PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like|Probable phosphatase YcdX GO:0003824|GO:0008270 G3DSA:3.20.20.140|MF_01561|PF02811|SM00481|SSF89550 NJ56_RS15980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006140|IPR016040 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|NAD(P)-binding domain GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF02826|SSF51735 NJ56_RS15985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000109|IPR005279|IPR020846 Dipeptide/tripeptide permease|Major facilitator superfamily domain|Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0015197|GO:0015833|GO:0016020 G3DSA:1.20.1250.20|PF00854|SSF103473|TIGR00924 NJ56_RS15995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017946|IPR030395 Glycerophosphodiester phosphodiesterase domain|PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 G3DSA:3.20.20.190|PF03009|SSF51695 NJ56_RS16005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 NJ56_RS16010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001902|IPR002645|IPR011547|IPR018045 SLC26A/SulP transporter|SLC26A/SulP transporter domain|STAS domain|Sulphate anion transporter, conserved site GO:0008271|GO:0008272|GO:0015116|GO:0016020|GO:0016021|GO:0055085 G3DSA:3.30.750.24|PF00916|PF01740|PS01130|SSF52091|TIGR00815 NJ56_RS16015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006218|IPR006269|IPR013785 3-deoxy-8-phosphooctulonate synthase|Aldolase-type TIM barrel|DAHP synthetase I/KDSA GO:0003824|GO:0005737|GO:0008152|GO:0008676|GO:0009058 G3DSA:3.20.20.70|MF_00056|PF00793|SSF51569|TIGR01362 NJ56_RS16020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011990|IPR032698 Protein SirB1, N-terminal|Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.25.40.10|PF13369|PF13371|SSF48452 NJ56_RS16025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007360 Invasion gene expression up-regulator, SirB PF04247|PIRSF005610 NJ56_RS16030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002052|IPR004556|IPR019874|IPR025714|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase domain|Modification methylase HemK|Protein-(glutamine-N5) methyltransferase, release factor-specific|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0006479|GO:0008168|GO:0008276|GO:0032259 G3DSA:1.10.8.10|G3DSA:3.40.50.150|MF_02126|PF13847|PS00092|SSF53335|TIGR00536|TIGR03534 NJ56_RS16035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000352|IPR004373|IPR005139 Peptide chain release factor|Peptide chain release factor 1|Peptide chain release factor class I/class II GO:0003747|GO:0005737|GO:0006415|GO:0016149 G3DSA:1.20.58.410|G3DSA:3.30.160.20|MF_00093|PF00472|PF03462|PS00745|SM00937|SSF75620|TIGR00019 NJ56_RS16040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000343|IPR006151|IPR015895|IPR015896|IPR016040|IPR018214 Glutamyl-tRNA reductase, conserved site|NAD(P)-binding domain|Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 G3DSA:1.10.1200.70|G3DSA:3.40.50.720|MF_00087|PF00745|PF01488|PF05201|PIRSF000445|PS00747|SSF51735|SSF69075|SSF69742|TIGR01035 NJ56_RS16045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004565|IPR029046 Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein LolB GO:0009279|GO:0015031 G3DSA:2.50.20.10|MF_00233|PF03550|SSF89392|TIGR00548 NJ56_RS16050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004424|IPR006204|IPR013750|IPR014721|IPR020568 4-diphosphocytidyl-2C-methyl-D-erythritol kinase|GHMP kinase N-terminal domain|GHMP kinase, C-terminal domain|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0005524|GO:0016114|GO:0050515 G3DSA:3.30.230.10|G3DSA:3.30.70.890|MF_00061|PF00288|PF08544|PIRSF010376|SSF54211|SSF55060|TIGR00154 NJ56_RS16055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000842|IPR005946|IPR029057|IPR029099 Phosphoribosyl pyrophosphate synthetase, conserved site|Phosphoribosyltransferase-like|Ribose-phosphate diphosphokinase|Ribose-phosphate pyrophosphokinase, N-terminal domain GO:0000287|GO:0004749|GO:0009156|GO:0009165|GO:0044249 G3DSA:3.40.50.2020|MF_00583_B|PF13793|PF14572|PS00114|SM01400|SSF53271|TIGR01251 NJ56_RS16060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019698 Protein of unknown function DUF2583 PF10762 NJ56_RS16065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001328|IPR018171 Peptidyl-tRNA hydrolase|Peptidyl-tRNA hydrolase, conserved site GO:0004045 G3DSA:3.40.50.1470|MF_00083|PF01195|PS01195|PS01196|SSF53178|TIGR00447 NJ56_RS16075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004396|IPR006073|IPR012675|IPR012676|IPR013029|IPR023192|IPR027417 Beta-grasp domain|Domain of unknown function DUF933|GTP binding domain|P-loop containing nucleoside triphosphate hydrolase|Ribosome-binding ATPase YchF/Obg-like ATPase 1|TGS-like|TGS-like domain GO:0005525 G3DSA:1.10.150.300|G3DSA:3.10.20.30|G3DSA:3.40.50.300|MF_00944|PF01926|PF06071|PIRSF006641|PR00326|SSF52540|SSF81271|TIGR00092 NJ56_RS16085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002078|IPR003018|IPR003593|IPR009057|IPR025662|IPR025944|IPR027417|IPR029016 AAA+ ATPase domain|GAF domain|GAF domain-like|Homeobox domain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, conserved site GO:0003677|GO:0005515|GO:0005524|GO:0006355|GO:0008134 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF13492|PS00675|PS00688|SM00065|SM00382|SSF46689|SSF52540|SSF55781 NJ56_RS16090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010918|IPR011854|IPR016188 AIR synthase-related protein, C-terminal domain|Hydrogenase expression/formation protein HypE|PurM-like, N-terminal domain G3DSA:3.30.1330.10|G3DSA:3.90.650.10|PF00586|PF02769|PIRSF005644|SSF55326|SSF56042|TIGR02124 NJ56_RS16095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002780 Hydrogenase formation HypD protein GO:0046872 PF01924|PIRSF005622|TIGR00075 NJ56_RS16100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001109|IPR019812 Hydrogenase assembly chaperone, conserved site|Hydrogenase expression/formation protein, HupF/HypC PF01455|PR00445|PS01097|SSF159127|TIGR00074 NJ56_RS16105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003495|IPR004392|IPR012202|IPR027417 CobW/HypB/UreG, nucleotide-binding domain|Hydrogenase accessory protein HypB|P-loop containing nucleoside triphosphate hydrolase|[NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0006461|GO:0016151 G3DSA:3.40.50.300|PF02492|PIRSF005624|SSF52540|TIGR00073 NJ56_RS16110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000688|IPR020538 Hydrogenase nickel incorporation protein HypA/HybF|Hydrogenase nickel incorporation protein HypA/HybF, conserved site GO:0006464|GO:0016151 MF_00213|PF01155|PIRSF004761|PS01249|TIGR00100 NJ56_RS16115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021285 Transcription regulator, HycA PF11046 NJ56_RS16120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain G3DSA:3.30.70.20|PF00037|PS00198|SSF54862 NJ56_RS16125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001750|IPR003918 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PF00361|PR01437 NJ56_RS16130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001694|IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site|NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 PF00146|PS00667|PS00668 NJ56_RS16135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001135|IPR001268|IPR001501|IPR014029|IPR029014 NADH-quinone oxidoreductase, subunit D|NADH:ubiquinone oxidoreductase, 30kDa subunit|NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site|NiFe hydrogenase-like|Nickel-dependent hydrogenase, large subunit GO:0008137|GO:0016151|GO:0016651|GO:0048038|GO:0051287|GO:0055114 G3DSA:1.10.645.10|PD001581|PF00329|PF00346|PF00374|PS00535|SSF143243|SSF56762 NJ56_RS16140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain G3DSA:3.30.70.20|PF12838|PS00198|SSF54862 NJ56_RS16145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006137|IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit|NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0008137|GO:0048038|GO:0051536|GO:0051539|GO:0055114 G3DSA:3.40.50.700|PF01058|PS01150|SSF56770 NJ56_RS16150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010005 Formate hydrogenlyase maturation HycH PD021295|PF07450 NJ56_RS16155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000671|IPR004420|IPR023430 Peptidase A31 family|Peptidase A31, hydrogenase maturation protease HycI|Peptidase HybD-like domain GO:0008047|GO:0008233 G3DSA:3.40.50.1450|PF01750|PR00446|SSF53163|TIGR00072|TIGR00142 NJ56_RS16160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain G3DSA:3.30.70.20|PF00037|PF12800|PS00198|SSF54862 NJ56_RS16165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006478|IPR006655|IPR006656|IPR006657|IPR006963|IPR009010 Aspartate decarboxylase-like domain|Formate dehydrogenase, alpha subunit|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0008863|GO:0009055|GO:0015942|GO:0016491|GO:0030151|GO:0055114 G3DSA:1.20.5.460|G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PIRSF000144|PS00490|SM00926|SSF50692|SSF53706|TIGR01591 NJ56_RS16170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001792|IPR004421|IPR006070|IPR011125|IPR017945 Acylphosphatase-like domain|Carbamoyltransferase, HypF-type|DHBP synthase RibB-like alpha/beta domain|YrdC-like domain|Zinc finger, HypF-type GO:0003725|GO:0008270|GO:0016743|GO:0046872|GO:0046944 G3DSA:2.10.290.10|G3DSA:3.30.420.40|G3DSA:3.30.70.100|G3DSA:3.90.870.10|PF00708|PF01300|PF07503|PIRSF006256|SSF54975|SSF55821|TIGR00143 NJ56_RS16175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004688|IPR011541 Nickel/cobalt transporter, high-affinity|Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 PF03824|TIGR00802 NJ56_RS16180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006070|IPR017945 DHBP synthase RibB-like alpha/beta domain|YrdC-like domain GO:0003725 G3DSA:3.90.870.10|PF01300|SSF55821 NJ56_RS16185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS16190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010282|IPR011051|IPR014710 RmlC-like cupin domain|RmlC-like jelly roll fold|Uncharacterised protein family HutD/Ves G3DSA:2.60.120.10|PF05962|SSF51182 NJ56_RS16195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006680|IPR010252|IPR011059|IPR032466 Amidohydrolase-related|Formiminoglutamate deiminase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556|TIGR02022 NJ56_RS16200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000524|IPR010248|IPR011663|IPR011991|IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain|Histidine utilization repressor|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0003700|GO:0006355|GO:0006547|GO:0045892 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288|TIGR02018 NJ56_RS16205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005920|IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Imidazolonepropionase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain GO:0005737|GO:0016787|GO:0016810|GO:0016812|GO:0019556 G3DSA:2.30.40.10|G3DSA:3.20.20.140|MF_00372|PF01979|SSF51338|SSF51556|TIGR01224 NJ56_RS16210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007709|IPR010247 N-formylglutamate amidohydrolase|N-formylglutamate deformylase G3DSA:3.40.630.40|PF05013|SSF53187|TIGR02017 NJ56_RS16215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001702|IPR001897 Porin, Gram-negative type|Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 G3DSA:2.40.160.10|PF00267|PR00182|PR00183|SSF56935 NJ56_RS16220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007036|IPR016681 Succinylglutamate desuccinylase|Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0008270|GO:0009017|GO:0016788|GO:0019544|GO:0019545 G3DSA:3.40.630.10|MF_00767|PF04952|PIRSF017020|SSF53187|TIGR03242 NJ56_RS16225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 G3DSA:3.75.10.20|MF_01172|PF04996|SSF55909|TIGR03241 NJ56_RS16230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR017649|IPR029510 Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase|Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0008152|GO:0016491|GO:0043824|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|MF_01174|PF00171|PS00070|PS00687|SSF53720|TIGR03240 NJ56_RS16235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007041|IPR016181|IPR017650 Acyl-CoA N-acyltransferase|Arginine N-succinyltransferase|Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 G3DSA:2.40.40.20|G3DSA:3.40.630.30|MF_01171|PF04958|SSF55729|TIGR03243|TIGR03244 NJ56_RS16240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004636|IPR005814|IPR015421|IPR015422|IPR015424|IPR017652 Acetyl/Succinylornithine transaminase family, bacteria|Acetylornithine/Succinylornithine transaminase family|Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0006520|GO:0006525|GO:0008483|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01107|PF00202|PIRSF000521|PS00600|SSF53383|TIGR00707|TIGR03246 NJ56_RS16245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000524|IPR004839|IPR011991|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 NJ56_RS16250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 PF01654|PIRSF006446 NJ56_RS16255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PF02322|PIRSF000267|TIGR00203 NJ56_RS16260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018895 Protein of unknown function DUF2474 PF10617 NJ56_RS16265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003660|IPR011712|IPR016380|IPR029016|IPR029095 GAF domain-like|HAMP domain|Histidine kinase-like ATPase, C-terminal domain|NarX-like, N-terminal|Signal transduction histidine kinase, nitrate/nitrite-sensing|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0007165|GO:0016021|GO:0046983 G3DSA:3.30.450.40|G3DSA:3.30.565.10|PF00672|PF02518|PF07730|PF13675|PIRSF003167|SM00304|SM00387|SSF158472|SSF55874 NJ56_RS16270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007037|IPR013113|IPR017938 FAD-binding 9, siderophore-interacting|Riboflavin synthase-like beta-barrel|Siderophore-interacting protein GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF04954|PF08021|SSF63380 NJ56_RS16275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004713|IPR004837 Calcium/proton exchanger|Sodium/calcium exchanger membrane region GO:0006812|GO:0008324|GO:0016021|GO:0055085 PF01699|TIGR00846 NJ56_RS16280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003714|IPR027417 P-loop containing nucleoside triphosphate hydrolase|PhoH-like protein GO:0005524 G3DSA:3.40.50.300|PF02562|SSF52540 NJ56_RS16285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009057|IPR018060|IPR018062 DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox domain-like GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PS00041|SM00342|SSF46689 NJ56_RS16290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS16300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003423|IPR010130 Outer membrane efflux protein|Type I secretion outer membrane protein, TolC GO:0005215|GO:0006810|GO:0019867 G3DSA:1.20.1600.10|PF02321|SSF56954|TIGR01844 NJ56_RS16305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003997|IPR006143|IPR006144|IPR010129|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain|RTX secretion protein D, Gram-negative bacteria|Secretion protein HlyD, conserved site|Type I secretion membrane fusion protein, HlyD family GO:0005215|GO:0008565|GO:0009306|GO:0015031|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.287.540|G3DSA:1.20.5.50|G3DSA:2.40.50.100|PF00529|PF16576|PR01490|PS00543|TIGR01843 NJ56_RS16310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR010128|IPR011527|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter-like|ATPase, type I secretion system, PrtD|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0008565|GO:0016021|GO:0016887|GO:0030253|GO:0030256|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR01842 NJ56_RS16315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003086|IPR016085|IPR021140|IPR022815 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19|Metalloprotease inhibitor I38|Protease inhibitor I38|Protease inhibitor, beta-barrel domain GO:0004866|GO:0030288 G3DSA:2.40.128.10|PD015804|PF02974|PR01274|SSF50882 NJ56_RS16320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006026|IPR011049|IPR013858|IPR016294|IPR018511|IPR024079 Hemolysin-type calcium-binding conserved site|Metallopeptidase, catalytic domain|Peptidase M10 serralysin, C-terminal|Peptidase M10B|Peptidase, metallopeptidase|Serralysin-like metalloprotease, C-terminal GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008237|GO:0008270 G3DSA:2.150.10.10|G3DSA:3.40.390.10|PF08548|PF13583|PIRSF001205|PR00313|PS00330|SM00235|SSF51120|SSF55486 NJ56_RS16325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001898|IPR030676 Citrate carrier CitT-related|Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 PF00939|PIRSF002457|TIGR00785 NJ56_RS16330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000014|IPR003594|IPR004358|IPR013767|IPR029151|IPR033463 Histidine kinase-like ATPase, C-terminal domain|PAS domain|PAS fold|Periplasmic sensor domain-like|Signal transduction histidine kinase-related protein, C-terminal|Single cache domain 3 GO:0006355|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00989|PF02518|PF14689|PF17203|PR00344|SM00387|SSF103190|SSF55785|SSF55874 NJ56_RS16335 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR011006|IPR011991|IPR024187 CheY-like superfamily|Signal transduction response regulator, citrate/malate metabolism|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0001071|GO:0003677|GO:0005737|GO:0009605 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PIRSF006171|SM00448|SSF52172 NJ56_RS16340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 PF03390|PIRSF005348 NJ56_RS16345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004089|IPR004090 Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|PF00015|PR00260|SM00283|SSF58104 NJ56_RS16350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001567|IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal|Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 G3DSA:1.10.1370.10|G3DSA:1.20.1050.40|PF01432|SSF55486 NJ56_RS16355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001360|IPR017853|IPR018120|IPR033132 Glycoside hydrolase family 1|Glycoside hydrolase family 1, active site|Glycoside hydrolase superfamily|Glycosyl hydrolases family 1, N-terminal conserved site GO:0004553|GO:0005975 G3DSA:3.20.20.80|PF00232|PR00131|PS00572|PS00653|SSF51445 NJ56_RS16360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001690|IPR016181|IPR018311 Acyl-CoA N-acyltransferase|Autoinducer synthase|Autoinducer synthesis, conserved site GO:0016740 G3DSA:3.40.630.30|PF00765|PR01549|PS00949|SSF55729 NJ56_RS16365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR005143|IPR011991|IPR016032 Signal transduction response regulator, C-terminal effector|Transcription factor LuxR-like, autoinducer-binding domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.80|PF00196|PF03472|PR00038|SM00421|SSF46894|SSF75516 NJ56_RS16370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004439|IPR019818|IPR024084 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic|Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain GO:0000287|GO:0004450|GO:0006099|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF00180|PS00470|SM01329|SSF53659|TIGR00183 NJ56_RS16375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000748|IPR006145|IPR018496|IPR020103 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.30.70.1560|G3DSA:3.30.70.580|PF00849|PS01149|SSF55120|TIGR00093 NJ56_RS16380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000086|IPR015797|IPR020084|IPR020476 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site GO:0016787 G3DSA:3.90.79.10|PF00293|PR00502|PS00893|SSF55811 NJ56_RS16385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004506|IPR014729|IPR023382 Adenine nucleotide alpha hydrolase-like domains|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-specific 2-thiouridylase GO:0008033|GO:0016740|GO:0016783 G3DSA:2.30.30.280|G3DSA:2.40.30.10|G3DSA:3.40.50.620|MF_00144|PF03054|SSF52402|TIGR00420 NJ56_RS16390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007451 Uncharacterised protein family UPF0274 G3DSA:1.10.3890.10|MF_00695|PD037115|PF04356|SSF101322 NJ56_RS16395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000362|IPR004769|IPR008948|IPR013539|IPR020557|IPR022761|IPR024083 Adenylosuccinate lyase|Adenylosuccinate lyase PurB, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004018|GO:0006188|GO:0009152 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF08328|PR00149|PS00163|SSF48557|TIGR00928 NJ56_RS16400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011250|IPR027385 Outer membrane protein beta-barrel|Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 G3DSA:2.40.160.20|PF13505|SSF56925 NJ56_RS16405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001789|IPR001867|IPR011006|IPR011991 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 NJ56_RS16410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003594|IPR003661|IPR004358|IPR015014 Histidine kinase-like ATPase, C-terminal domain|PhoQ Sensor|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0005524|GO:0007165|GO:0016020|GO:0016310|GO:0016772|GO:0018106|GO:0046872 G3DSA:3.30.565.10|PF02518|PF08918|PR00344|SM00387|SM00388|SSF47384|SSF55874 NJ56_RS16415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003347 JmjC domain G3DSA:2.60.120.650|PF08007|SM00558|SSF51197 NJ56_RS16420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001261|IPR002933|IPR010161|IPR011650 ArgE/DapE/ACY1/CPG2/YscS, conserved site|Peptidase M20|Peptidase M20, dimerisation domain|Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006508|GO:0006518|GO:0008152|GO:0008237|GO:0008270|GO:0016787|GO:0045148 G3DSA:3.40.630.10|MF_00550|PF01546|PF07687|PIRSF037215|PS00758|PS00759|SSF53187|SSF55031|TIGR01882 NJ56_RS16425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003000|IPR027546|IPR029035 DHS-like NAD/FAD-binding domain|Sirtuin family|Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 G3DSA:3.40.50.1220|MF_01121|PF02146|SSF52467 NJ56_RS16430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000600|IPR023505 N-acetyl-D-glucosamine kinase|ROK family GO:0045127 G3DSA:3.30.420.40|MF_01271|PF00480|PS01125|SSF53067 NJ56_RS16435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003838|IPR011925|IPR011926|IPR025857 ABC transporter permease protein domain|Lipoprotein-releasing system transmembrane protein LolC/E|Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type|MacB-like periplasmic core domain GO:0006810|GO:0009276|GO:0016020|GO:0016021|GO:0042953|GO:0042954 PF02687|PF12704|TIGR02212|TIGR02213 NJ56_RS16440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR011924|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Lipoprotein releasing system, ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0016020|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR02211 NJ56_RS16445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003838|IPR011925|IPR025857 ABC transporter permease protein domain|Lipoprotein-releasing system transmembrane protein LolC/E|MacB-like periplasmic core domain GO:0016020|GO:0016021|GO:0042953|GO:0042954 PF02687|PF12704|TIGR02212 NJ56_RS16455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001650|IPR003711|IPR004576|IPR005118|IPR011545|IPR014001|IPR027417 CarD-like/TRCF domain|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transcription-repair coupling factor|Transcription-repair-coupling factor, C-terminal domain GO:0003676|GO:0003684|GO:0005524|GO:0006281 G3DSA:3.40.50.300|MF_00969|PF00270|PF00271|PF02559|PF03461|SM00487|SM00490|SM00982|SM01058|SSF141259|SSF143517|SSF52540|TIGR00580 NJ56_RS16460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008816 Glycine zipper 2TM domain GO:0019867 PF05433 NJ56_RS16465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF07992|PR00368|PR00411|SSF51905 NJ56_RS16470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008886|IPR022987|IPR029058 Alpha/Beta hydrolase fold|Uncharacterised protein family UPF0227|Uncharacterised protein family UPF0227/Esterase YqiA G3DSA:3.40.50.1820|MF_01047|PF05728|SSF53474 NJ56_RS16475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001764|IPR017853|IPR019800|IPR022956 Beta-hexosaminidase, bacterial|Glycoside hydrolase superfamily|Glycoside hydrolase, family 3, N-terminal|Glycoside hydrolase, family 3, active site GO:0004553|GO:0004563|GO:0005975 G3DSA:3.20.20.300|MF_00364|PF00933|PS00775|SSF51445 NJ56_RS16480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002575|IPR011009|IPR014093 Aminoglycoside phosphotransferase|Protein kinase-like domain|Thiamine kinase GO:0006772|GO:0016310|GO:0019165 G3DSA:3.90.1200.10|MF_01604|PF01636|SSF56112|TIGR02721 NJ56_RS16485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014094 Penicillin-binding protein activator LpoB G3DSA:3.40.50.10070|MF_01889|PF13036|TIGR02722 NJ56_RS16490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010824 Protein of unknown function DUF1425 PF07233 NJ56_RS16495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001310|IPR011146|IPR019808 HIT-like domain|Histidine triad (HIT) protein|Histidine triad, conserved site GO:0003824 G3DSA:3.30.428.10|PF01230|PR00332|PS00892|SSF54197 NJ56_RS16500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001996|IPR003352|IPR004719|IPR011299|IPR018113 PTS system glucose-specific IIBC component|Phosphotransferase system EIIB, cysteine phosphorylation site|Phosphotransferase system, EIIC|Phosphotransferase system, IIB component, type 1|Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0005355|GO:0008982|GO:0009401|GO:0015758|GO:0016020|GO:0016021 G3DSA:3.30.1360.60|PF00367|PF02378|PS01035|SSF55604|TIGR00826|TIGR00852|TIGR02002 NJ56_RS16505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001130|IPR015991|IPR018228|IPR032466 Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family|Uncharacterised hydrolase TatD-type GO:0004536|GO:0016788|GO:0016888 G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01091|PS01137|SSF51556|TIGR00010 NJ56_RS16510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004622|IPR008921|IPR015199|IPR027417 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, delta prime subunit|DNA polymerase III, delta subunit, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 G3DSA:1.10.8.10|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF09115|PF13177|SSF48019|SSF52540|TIGR00678 NJ56_RS16515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018094|IPR018095|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Thymidylate kinase|Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 G3DSA:3.40.50.300|MF_00165|PF02223|PS01331|SSF52540|TIGR00041 NJ56_RS16520 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003770 Endolytic murein transglycosylase G3DSA:3.30.160.60|MF_02065|PF02618|TIGR00247 NJ56_RS16525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001544|IPR017824|IPR018300 Aminodeoxychorismate lyase, class IV|Aminotransferase class IV|Aminotransferase, class IV, conserved site GO:0003824|GO:0008152|GO:0008696|GO:0030170|GO:0046656 G3DSA:3.20.10.10|G3DSA:3.30.470.10|PF01063|PS00770|SSF56752|TIGR03461 NJ56_RS16530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014030|IPR014031|IPR016039|IPR017568|IPR018201|IPR020841 3-oxoacyl-[acyl-carrier-protein] synthase 2|Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|Polyketide synthase, beta-ketoacyl synthase domain|Thiolase-like GO:0003824|GO:0006633|GO:0008152|GO:0016747 G3DSA:3.40.47.10|PF00109|PF02801|PIRSF000447|PS00606|SM00825|SSF53901|TIGR03150 NJ56_RS16535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003231|IPR006162|IPR009081 Acyl carrier protein (ACP)|Phosphopantetheine attachment site|Phosphopantetheine binding ACP domain GO:0006633 G3DSA:1.10.1200.10|MF_01217|PF00550|PS00012|SSF47336|TIGR00517 NJ56_RS16540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002347|IPR011284|IPR016040|IPR020904 3-oxoacyl-(acyl-carrier-protein) reductase|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0004316|GO:0006633|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01830 NJ56_RS16545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004410|IPR014043|IPR016035|IPR016036|IPR020801|IPR024925 Acyl transferase|Acyl transferase/acyl hydrolase/lysophospholipase|Malonyl CoA-acyl carrier protein transacylase|Malonyl CoA-acyl carrier protein transacylase, FabD-type|Malonyl-CoA ACP transacylase, ACP-binding|Polyketide synthase, acyl transferase domain GO:0003824|GO:0004314|GO:0008152 G3DSA:3.40.366.10|PF00698|PIRSF000446|SM00827|SSF52151|SSF55048|TIGR00128 NJ56_RS16550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004655|IPR013747|IPR013751|IPR016039 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III|3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal|3-oxoacyl-[acyl-carrier-protein] synthase 3|Thiolase-like GO:0003824|GO:0004315|GO:0006633|GO:0008152 G3DSA:3.40.47.10|MF_01815|PF08541|PF08545|SSF53901|TIGR00747 NJ56_RS16555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003664|IPR012281 Fatty acid synthesis PlsX protein|Phospholipid biosynthesis protein, PlsX-like GO:0003824|GO:0006633|GO:0016747 G3DSA:3.40.718.10|MF_00019|PF02504|PIRSF002465|SSF53659|TIGR00182 NJ56_RS16560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002677|IPR011332 Ribosomal protein L32p|Zinc-binding ribosomal protein GO:0003735|GO:0006412|GO:0015934 MF_00340|PF01783|SSF57829|TIGR01031 NJ56_RS16565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003772 Large ribosomal RNA subunit accumulation protein YceD PF02620 NJ56_RS16570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003697|IPR029001 Inosine triphosphate pyrophosphatase-like|Maf-like protein GO:0047429 G3DSA:3.90.950.10|MF_00528|PF02545|PIRSF006305|SSF52972|TIGR00172 NJ56_RS16575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002942|IPR006145|IPR006224|IPR006225|IPR020103 Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|PS01129|SM00363|SSF55120|SSF55174|TIGR00005 NJ56_RS16585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003029|IPR004659|IPR012340|IPR019307|IPR021968|IPR022967|IPR028878 Nucleic acid-binding, OB-fold|Polyribonucleotide phosphorylase C-terminal|RNA-binding domain, S1|RNA-binding protein AU-1/Ribonuclease E/G|Ribonuclease E|Ribonuclease E/G|S1 domain GO:0003676|GO:0003723|GO:0004540|GO:0006396|GO:0008995 G3DSA:2.40.50.140|MF_00970|PF00575|PF10150|PF12111|SM00316|SSF50249|TIGR00757 NJ56_RS16590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005135 Endonuclease/exonuclease/phosphatase G3DSA:3.60.10.10|SSF56219 NJ56_RS16595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007138|IPR011008 Antibiotic biosynthesis monooxygenase domain|Dimeric alpha-beta barrel G3DSA:3.30.70.100|PF03992|SSF54909 NJ56_RS16600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002195|IPR004721|IPR006680|IPR032466 Amidohydrolase-related|Dihydroorotase homodimeric type|Dihydroorotase, conserved site|Metal-dependent hydrolase GO:0004151|GO:0016787|GO:0016812|GO:0019856 G3DSA:3.20.20.140|MF_00219|PF01979|PIRSF001237|PS00483|SSF51556|TIGR00856 NJ56_RS16605 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010391 DNA damage-inducible protein DinI-like G3DSA:3.30.910.10|PF06183|SSF54857 NJ56_RS16610 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025730 Biofilm regulator BssS PD060858|PF13991 NJ56_RS16615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006076|IPR023493|IPR023753 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain|N-methyl-L-tryptophan oxidase MTOX GO:0016491|GO:0050131|GO:0050660|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.40.50.720|MF_00515|PF01266|SSF51905|SSF54373 NJ56_RS16620 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR011991|IPR016032 Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF00196|SM00421|SSF46894 NJ56_RS16625 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002549 Transmembrane protein TqsA-like PF01594 NJ56_RS16630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001763|IPR020936|IPR022111 Rhodanase, C-terminal|Rhodanese-like domain|Uncharacterised protein family UPF0176 G3DSA:3.40.250.10|MF_00469|PF00581|PF12368|SM00450|SSF52821 NJ56_RS16635 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004960|IPR011920 Bacterial lipid A biosynthesis acyltransferase|Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 MF_01942|PF03279|PIRSF026649|TIGR02207 NJ56_RS16640 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005545|IPR011008 Dimeric alpha-beta barrel|YCII-related G3DSA:3.30.70.1060|PF03795|SSF54909 NJ56_RS16645 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000109|IPR005279|IPR018456|IPR020846 Dipeptide/tripeptide permease|Major facilitator superfamily domain|PTR2 family proton/oligopeptide symporter, conserved site|Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0006857|GO:0015197|GO:0015833|GO:0016020 G3DSA:1.20.1250.20|PF00854|PS01022|PS01023|SSF103473|TIGR00924 NJ56_RS16650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 NJ56_RS16655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001173|IPR023725|IPR029044 Glucan biosynthesis glucosyltransferase H|Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases GO:0016758 G3DSA:3.90.550.10|MF_01072|PF00535|SSF53448 NJ56_RS16660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007444|IPR011013|IPR013783|IPR014438|IPR014718|IPR014756|IPR023704 Galactose mutarotase-like domain|Glucan biosynthesis protein G|Glucan biosynthesis, periplasmic, MdoG C-terminal|Glucan biosynthesis, periplasmic, MdoG/D|Glycoside hydrolase-type carbohydrate-binding|Immunoglobulin E-set|Immunoglobulin-like fold GO:0003824|GO:0005975|GO:0016051|GO:0030246|GO:0042597 G3DSA:2.60.40.10|G3DSA:2.70.98.10|MF_01069|PF04349|PIRSF006281|SSF74650|SSF81296 NJ56_RS16665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002656 Acyltransferase 3 GO:0016747 PF01757 NJ56_RS16675 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005170|IPR006037|IPR006153|IPR016166|IPR016169|IPR023729 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|Cation/H+ exchanger|FAD-binding, type 2|K(+)/H(+) antiporter NhaP2|Regulator of K+ conductance, C-terminal|Transporter-associated domain GO:0003824|GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0008324|GO:0015299|GO:0016021|GO:0016614|GO:0050660|GO:0055085|GO:0055114 G3DSA:3.30.465.10|G3DSA:3.30.70.1450|MF_01075|PF00999|PF02080|PF03471|SM01091|SSF116726|SSF56176 NJ56_RS16680 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 G3DSA:3.40.1050.10|PF00484|SM00947|SSF53056 NJ56_RS16690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007453|IPR025526 DsrC-like domain|Sulphur transfer protein DsrC/TusE G3DSA:1.10.10.370|G3DSA:3.30.1420.10|PF04358|PIRSF006223|SSF69721|TIGR03342 NJ56_RS16695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001792|IPR017968|IPR028627 Acylphosphatase, bacteria|Acylphosphatase, conserved site|Acylphosphatase-like domain GO:0003998 G3DSA:3.30.70.100|MF_01450|PF00708|PS00150|PS00151|SSF54975 NJ56_RS16700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002478|IPR015947|IPR019614|IPR023542|IPR029063 PUA domain|PUA-like domain|S-adenosyl-L-methionine-dependent methyltransferase|S-adenosylmethionine-dependent methyltransferase|rRNA large subunit methyltransferase I GO:0003723|GO:0008168|GO:0008649 G3DSA:2.30.130.10|G3DSA:3.30.750.80|G3DSA:3.40.50.150|MF_01857|PF10672|SM00359|SSF53335|SSF88697 NJ56_RS16705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011722|IPR022866 Heat shock protein HspQ|Hemimethylated DNA-binding domain GO:0003677 G3DSA:2.30.30.390|MF_01194|PF08755|SM00992|SSF141255|TIGR02097 NJ56_RS16710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003781|IPR016040 CoA-binding|NAD(P)-binding domain GO:0048037 G3DSA:3.40.50.720|PF13380|SM00881|SSF51735 NJ56_RS16715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR018635 Uncharacterised protein family UPF0319 MF_00789|PF09829 NJ56_RS16720 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004363|IPR011607|IPR018148 Methylglyoxal synthase|Methylglyoxal synthase, active site|Methylglyoxal synthase-like domain GO:0008929|GO:0019242 G3DSA:3.40.50.1380|MF_00549|PF02142|PIRSF006614|PS01335|SM00851|SSF52335|TIGR00160 NJ56_RS16725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014017|IPR022161|IPR027417|IPR034739 DNA helicase IV, N-terminal domain|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0005524|GO:0016787 G3DSA:3.40.50.300|PF00580|PF12462|PF13361|SSF52540 NJ56_RS16730 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005185|IPR031308 Inner membrane component domain|Uncharacterised conserved protein UCP028777 PF03733|PIRSF028777 NJ56_RS16735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010019|IPR010020|IPR032692 Integral membrane protein YccS, N-terminal|Integral membrane protein, YccS|Integral membrane protein, YccS/YhfK PF12805|PF13515|TIGR01666|TIGR01667 NJ56_RS16740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007076|IPR007077|IPR026256 TfoX, C-terminal|TfoX, N-terminal|Transcriptional regulator, TfoX/Sxy-type G3DSA:1.10.150.20|G3DSA:3.30.1460.30|PF04993|PF04994|PIRSF028788|SSF159894 NJ56_RS16745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004596|IPR027417 Cell division suppressor protein, SulA|P-loop containing nucleoside triphosphate hydrolase GO:0009432|GO:0051782 G3DSA:3.40.50.300|MF_01179|PF03846|PIRSF003093|SSF52540 NJ56_RS16750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000498|IPR002368|IPR006664|IPR006665|IPR006690|IPR011250 OmpA-like domain|Outer membrane protein OmpA-like, transmembrane domain|Outer membrane protein, OmpA|Outer membrane protein, OmpA-like, conserved site|Outer membrane protein, bacterial|Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0005198|GO:0009279|GO:0016021 G3DSA:2.40.160.20|G3DSA:3.30.1330.60|PF00691|PF01389|PR01021|PR01022|PS01068|SSF103088|SSF56925 NJ56_RS16755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009390|IPR035087|IPR035375 Macrodomain Ter protein, MatP|MatP, C-terminal ribbon-helix-helix domain|MatP, N-terminal GO:0043565 G3DSA:1.10.3990.20|MF_01073|PD033720|PF06303|PF17414 NJ56_RS16760 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008269|IPR014721|IPR020568 Peptidase S16, Lon proteolytic domain|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0004176|GO:0004252|GO:0006508 G3DSA:3.30.230.10|PF05362|PF13654|PR00830|SSF54211 NJ56_RS16765 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010083|IPR013114|IPR029069 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA|Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ|HotDog domain GO:0005737|GO:0006633|GO:0008693 G3DSA:3.10.129.10|MF_00405|PF07977|SSF54637|TIGR01749 NJ56_RS16770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007040 Ribosome modulation factor G3DSA:1.10.10.620|MF_00919|PD051650|PF04957 NJ56_RS16775 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005586 ABC-type transport auxiliary lipoprotein component G3DSA:3.40.50.10610|PF03886|SSF159594 NJ56_RS16780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003399 Mce/MlaD G3DSA:1.10.287.500|PF02470 NJ56_RS16785 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005219|IPR007498 Conserved hypothetical protein CHP00155|Paraquat-inducible protein A G3DSA:2.10.230.10|PF04403|TIGR00155 NJ56_RS16790 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032524|IPR032781 AAA+ ATPase domain|ABC transporter Uup, C-terminal|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0005524|GO:0016887 G3DSA:1.20.58.410|G3DSA:3.40.50.300|PF00005|PF12848|PF16326|PS00211|SM00382|SSF52540 NJ56_RS16795 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000241|IPR002052|IPR004114|IPR017244|IPR019614|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Putative RNA methylase domain|Ribosomal RNA large subunit methyltransferase K/L|S-adenosyl-L-methionine-dependent methyltransferase|S-adenosylmethionine-dependent methyltransferase|THUMP domain GO:0003676|GO:0003723|GO:0005737|GO:0008168|GO:0008990|GO:0031167|GO:0032259 G3DSA:3.30.750.80|G3DSA:3.40.50.150|MF_01858|PF01170|PF02926|PF10672|PIRSF037618|PS00092|PS01261|SM00981|SSF53335 NJ56_RS16800 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001041|IPR005302|IPR005303|IPR006058|IPR011037|IPR012675 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|MOSC, N-terminal beta barrel|Molybdenum cofactor sulfurase, C-terminal|Pyruvate kinase-like, insert domain GO:0003824|GO:0009055|GO:0030151|GO:0030170|GO:0051536|GO:0051537 G3DSA:2.40.33.20|G3DSA:3.10.20.30|PF00111|PF03473|PF03476|PS00197|SSF141673|SSF50800|SSF54292 NJ56_RS16805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009809 Cell division protein ZapC MF_00906|PF07126|PIRSF010252 NJ56_RS16810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001295|IPR005719|IPR005720|IPR012135|IPR013785 Aldolase-type TIM barrel|Dihydroorotate dehydrogenase domain|Dihydroorotate dehydrogenase, class 1/ 2|Dihydroorotate dehydrogenase, class 2|Dihydroorotate dehydrogenase, conserved site GO:0003824|GO:0004152|GO:0005737|GO:0006207|GO:0006222|GO:0016020|GO:0016627|GO:0055114 G3DSA:3.20.20.70|MF_00225|PF01180|PIRSF000164|PS00911|PS00912|SSF51395|TIGR01036 NJ56_RS16815 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012779|IPR014782|IPR024601|IPR035414 Peptidase M1, alanyl aminopeptidase|Peptidase M1, alanyl aminopeptidase, C-terminal|Peptidase M1, alanyl aminopeptidase, Ig-like fold|Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 G3DSA:1.10.390.10|G3DSA:1.25.50.10|G3DSA:2.60.40.1730|PF01433|PF11940|PF17432|PR00756|SSF55486|SSF63737|TIGR02414 NJ56_RS16820 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002638|IPR006406|IPR007229 Nicotinate phosphoribosyltransferase|Nicotinate phosphoribosyltransferase family|Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0004516|GO:0009435|GO:0019357 G3DSA:3.20.140.10|MF_00570|PF04095|PIRSF000484|SSF51690|SSF54675|TIGR01514 NJ56_RS16825 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002312|IPR004364|IPR004365|IPR004522|IPR012340 Aminoacyl-tRNA synthetase, class II (D/K/N)|Asparagine-tRNA ligase|Aspartyl/Asparaginyl-tRNA synthetase, class IIb|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0004816|GO:0005524|GO:0005737|GO:0006418|GO:0006421 G3DSA:2.40.50.140|G3DSA:3.30.930.10|MF_00534|PF00152|PF01336|PR01042|SSF50249|SSF55681|TIGR00457 NJ56_RS16830 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001702|IPR001897|IPR013793 Porin, Gram-negative type|Porin, Gram-negative type, conserved site|Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 G3DSA:2.40.160.10|PF00267|PR00182|PR00183|PS00576|SSF56935 NJ56_RS16835 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000796|IPR004838|IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Aspartate/other aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0006520|GO:0008483|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PR00799|PS00105|SSF53383 NJ56_RS16840 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001279 Metallo-beta-lactamase G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 NJ56_RS16845 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009045|IPR010275 Hedgehog signalling/DD-peptidase zinc-binding domain|Protein of unknown function DUF882 G3DSA:3.30.1380.10|PF05951|SSF55166 NJ56_RS16850 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002477|IPR005490 L,D-transpeptidase catalytic domain|Peptidoglycan binding-like GO:0016740 G3DSA:1.10.101.10|G3DSA:2.40.440.10|PF01471|PF03734|SSF141523|SSF47090 NJ56_RS16855 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007406|IPR012090|IPR027417|IPR032520 Chromosome partition protein MukB|MukB, N-terminal domain|MukB, hinge domain|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 G3DSA:1.10.287.620|G3DSA:1.20.1170.10|G3DSA:1.20.120.330|G3DSA:3.40.1140.10|G3DSA:3.40.50.300|MF_01800|PF04310|PF13558|PF16330|PIRSF005246|SSF52540 NJ56_RS16860 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 MF_01802|PF04288 NJ56_RS16865 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005582|IPR011991|IPR033439|IPR033440|IPR033441 Chromosome partition protein MukF|Chromosome partition protein MukF, C-terminal domain|Chromosome partition protein MukF, middle domain|Chromosome partition protein MukF, winged-helix domain|Winged helix-turn-helix DNA-binding domain GO:0005509|GO:0006260|GO:0007059 G3DSA:1.10.10.10|MF_01803|PF03882|PF17192|PF17193|PIRSF018282|SSF140570|SSF46785 NJ56_RS16870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025714|IPR029063|IPR033664 Methyltransferase domain|S-adenosyl-L-methionine-dependent methyltransferase|tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 G3DSA:3.40.50.150|MF_02057|PF13847|SSF53335 NJ56_RS16875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003848|IPR014729 Domain of unknown function DUF218|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:3.40.50.620|PF02698 NJ56_RS16880 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002575|IPR011009 Aminoglycoside phosphotransferase|Protein kinase-like domain G3DSA:3.90.1200.10|PF01636|SSF56112 NJ56_RS16885 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003329|IPR004528|IPR029044 3-deoxy-D-manno-octulosonate cytidylyltransferase|Acylneuraminate cytidylyltransferase|Nucleotide-diphospho-sugar transferases GO:0005737|GO:0008690 G3DSA:3.90.550.10|MF_00057|PF02348|SSF53448|TIGR00466 NJ56_RS16890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005651 Uncharacterised protein family UPF0434/Trm112 G3DSA:2.20.25.10|MF_01187|PF03966|SSF158997 NJ56_RS16895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340 Cold shock domain|Cold shock, CspA|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|SM00357|SSF50249 NJ56_RS16900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0006355 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249 NJ56_RS16905 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009770|IPR029068 Domain of unknown function DUF1338|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase G3DSA:3.10.180.10|PF07063|SM01150 NJ56_RS16910 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003758|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 G3DSA:3.40.50.300|MF_00409|PF02606|SSF52540|TIGR00682 NJ56_RS16915 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR011527|IPR011917|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter, lipid A export, MsbA|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0034040|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR02203 NJ56_RS16920 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001279|IPR004477|IPR004797|IPR025405 ComEC/Rec2-related protein|Competence protein ComEC/Rec2|Domain of unknown function DUF4131|Metallo-beta-lactamase GO:0016021|GO:0030420 G3DSA:3.60.15.10|PF00753|PF03772|PF13567|SM00849|SSF56281|TIGR00360|TIGR00361 NJ56_RS16925 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000119|IPR005685|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain|Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 G3DSA:4.10.520.10|MF_00381|PF00216|PR01727|PS00045|SM00411|SSF47729|TIGR00988 NJ56_RS16930 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000110|IPR003029|IPR012340|IPR022967 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribosomal protein S1|S1 domain GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412 G3DSA:2.40.50.140|PF00575|PIRSF002111|PR00681|SM00316|SSF50249|TIGR00717 NJ56_RS16935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003136|IPR011994|IPR027417 Cytidylate kinase|Cytidylate kinase domain|P-loop containing nucleoside triphosphate hydrolase GO:0004127|GO:0005524|GO:0006139 G3DSA:3.40.50.300|MF_00238|PF02224|SSF52540|TIGR00017 NJ56_RS16940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001986|IPR006264|IPR013792|IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase|3-phosphoshikimate 1-carboxyvinyltransferase, conserved site|Enolpyruvate transferase domain|RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824|GO:0003866|GO:0009073|GO:0016765 G3DSA:3.65.10.10|MF_00210|PF00275|PIRSF000505|PS00104|PS00885|SSF55205|TIGR01356 NJ56_RS16945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR020578|IPR022278 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Phosphoserine aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0004648|GO:0006564 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00160|PF00266|PIRSF000525|PS00595|SSF53383|TIGR01364 NJ56_RS16950 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004550|IPR006034|IPR020827|IPR027473|IPR027474|IPR027475 Asparaginase/glutaminase, active site 1|Asparaginase/glutaminase, active site 2|Asparaginase/glutaminase-like|L-asparaginase, C-terminal domain|L-asparaginase, N-terminal|L-asparaginase, type II GO:0004067|GO:0006520|GO:0006528 G3DSA:3.40.50.1170|G3DSA:3.40.50.40|PF00710|PIRSF001220|PIRSF500176|PR00139|PS00144|PS00917|SM00870|SSF53774|TIGR00520 NJ56_RS16955 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003776 YcaO-like domain PF02624|TIGR00702 NJ56_RS16960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000292|IPR023271|IPR023999|IPR024002 Aquaporin-like|Formate transporter FocA, putative|Formate/nitrite transporter|Formate/nitrite transporter, conserved site GO:0005215|GO:0006810|GO:0015499|GO:0015724|GO:0016020|GO:0016021 G3DSA:1.20.1080.10|PF01226|PS01005|PS01006|TIGR00790|TIGR04060 NJ56_RS16965 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001150|IPR004184|IPR005949|IPR019777 Formate C-acetyltransferase glycine radical, conserved site|Formate acetyltransferase|Glycine radical domain|Pyruvate formate lyase domain GO:0003824|GO:0005737|GO:0005975|GO:0008152|GO:0008861 G3DSA:3.20.70.20|PF01228|PF02901|PIRSF000379|PS00850|SSF51998|TIGR01255 NJ56_RS16970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001989|IPR007197|IPR012838|IPR012839 Organic radical enzyme activase|Pyruvate formate-lyase activating enzyme|Radical SAM|Radical-activating enzyme, conserved site GO:0003824|GO:0016491|GO:0043365|GO:0051536|GO:0051539|GO:0055114 G3DSA:3.80.30.10|PF04055|PF13353|PIRSF000371|PS01087|SSF102114|TIGR02493 NJ56_RS16975 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011701|IPR020846|IPR023745 MSF-type transporter, YcaD|Major facilitator superfamily|Major facilitator superfamily domain GO:0016021|GO:0055085 G3DSA:1.20.1250.20|MF_01149|PF07690|SSF103473 NJ56_RS16980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002314|IPR002317|IPR010978|IPR015866 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Serine-tRNA ligase, type1|Serine-tRNA synthetase, type1, N-terminal|tRNA-binding arm GO:0000166|GO:0004812|GO:0004828|GO:0005524|GO:0005737|GO:0006418|GO:0006434 G3DSA:1.10.287.40|G3DSA:3.30.930.10|MF_00176|PF00587|PF02403|PIRSF001529|PR00981|SSF46589|SSF55681|TIGR00414 NJ56_RS16985 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003593|IPR003959|IPR008921|IPR021886|IPR027417|IPR032423 AAA C-terminal domain|AAA+ ATPase domain|ATPase, AAA-type, core|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|MgsA AAA+ ATPase C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0005524|GO:0006260 G3DSA:1.10.3710.10|G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF00004|PF12002|PF16193|SM00382|SSF48019|SSF52540 NJ56_RS16990 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004564|IPR018323|IPR029046 Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein carrier protein LolA, Proteobacteria|Outer membrane lipoprotein carrier protein LolA-like GO:0042597|GO:0042953|GO:0042954 G3DSA:2.50.20.10|MF_00240|PF03548|SSF89392|TIGR00547 NJ56_RS16995 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002543|IPR011991|IPR018541|IPR025199|IPR027417 DNA translocase FtsK, 4TM region|FtsK domain|FtsK gamma domain|P-loop containing nucleoside triphosphate hydrolase|Winged helix-turn-helix DNA-binding domain GO:0000166|GO:0003677|GO:0005524 G3DSA:1.10.10.10|G3DSA:3.40.50.300|PF01580|PF09397|PF13491|SM00843|SSF46785|SSF52540 NJ56_RS17000 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000485|IPR011008|IPR011991|IPR019887|IPR019888 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|SM00344|SSF46785|SSF54909 NJ56_RS17005 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000103|IPR005982|IPR008255|IPR023753 FAD/NAD(P)-binding domain|Pyridine nucleotide-disulphide oxidoreductase, class-II|Pyridine nucleotide-disulphide oxidoreductase, class-II, active site|Thioredoxin reductase GO:0004791|GO:0005737|GO:0016491|GO:0019430|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF07992|PR00368|PR00469|PS00573|SSF51905|TIGR01292 NJ56_RS17010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR011527|IPR014216|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0016020|GO:0016021|GO:0016887|GO:0042626|GO:0042883|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR02857 NJ56_RS17015 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR011527|IPR014223|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR02868 NJ56_RS17020 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004616|IPR016181 Acyl-CoA N-acyltransferase|Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MF_00688|PF03588|SSF55729|TIGR00667 NJ56_RS17025 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004368|IPR006196|IPR012340|IPR022967 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding domain, S1, IF1 type|Translation initiation factor IF-1 GO:0003723|GO:0003743|GO:0006413 G3DSA:2.40.50.140|MF_00075|PF01176|SM00316|SSF50249|TIGR00008 NJ56_RS17030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR013461|IPR018368|IPR019489|IPR027417|IPR028299 AAA+ ATPase domain|ATP-dependent Clp protease ATP-binding subunit ClpA|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp, N-terminal|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase GO:0004176|GO:0005524|GO:0019538 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|SM00382|SM01086|SSF52540|SSF81923|TIGR02639 NJ56_RS17035 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003769|IPR014719|IPR022935 ATP-dependent Clp protease adaptor protein ClpS|Adaptor protein ClpS, core|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like GO:0030163 G3DSA:3.30.1390.10|MF_00302|PF02617|SSF54736 NJ56_RS17040 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002059|IPR011129|IPR012156|IPR012340|IPR012751|IPR019844 Cold shock domain|Cold shock, CspA|Cold-shock conserved site|Cold-shock protein, DNA-binding|CspD, cold shock|Nucleic acid-binding, OB-fold GO:0003676|GO:0003677|GO:0005737|GO:0006355|GO:0006950 G3DSA:2.40.50.140|PF00313|PIRSF002599|PR00050|PS00352|SM00357|SSF50249|TIGR02381 NJ56_RS17045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR003838|IPR017871|IPR025857|IPR027417 AAA+ ATPase domain|ABC transporter permease protein domain|ABC transporter, conserved site|ABC transporter-like|MacB-like periplasmic core domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016887 G3DSA:3.40.50.300|PF00005|PF02687|PF12704|PS00211|SM00382|SSF52540 NJ56_RS17050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.20.1600.10|PF16576|SSF111369|TIGR01730 NJ56_RS17055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007488 Protein of unknown function DUF535 PF04393 NJ56_RS17060 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR022602|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Protein of unknown function DUF2813 G3DSA:3.40.50.300|PF11398|SSF52540 NJ56_RS17065 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005642 Lysine exporter LysO PD022789|PF03956 NJ56_RS17070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004137|IPR010048|IPR011254|IPR016099|IPR016100 Hydroxylamine reductase|Hydroxylamine reductase/Ni-containing CO dehydrogenase|Prismane, alpha-bundle|Prismane-like|Prismane-like, alpha/beta-sandwich GO:0003824|GO:0005737|GO:0016491|GO:0016661|GO:0051536|GO:0055114 G3DSA:1.20.1270.20|G3DSA:3.40.50.2030|MF_00069|PF03063|PIRSF000076|SSF56821|TIGR01703 NJ56_RS17075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001041|IPR001433|IPR001709|IPR001834|IPR006058|IPR008333|IPR012675|IPR017938 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|Flavoprotein pyridine nucleotide cytochrome reductase|NADH:cytochrome b5 reductase (CBR)|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00371|PR00406|PS00197|SSF52343|SSF54292|SSF63380 NJ56_RS17080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001597|IPR015421|IPR015422|IPR015424|IPR023603 Aromatic amino acid beta-eliminating lyase/threonine aldolase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2|Threonine aldolase GO:0003824|GO:0006520|GO:0016829 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01212|PIRSF017617|SSF53383 NJ56_RS17085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR016040|IPR021295|IPR023393 NAD(P)-binding domain|Protein of unknown function DUF2867|START-like domain G3DSA:3.30.530.20|G3DSA:3.40.50.720|PF11066|PF13460|SSF51735 NJ56_RS17090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001509|IPR016040 NAD(P)-binding domain|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|SSF51735 NJ56_RS17095 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002765|IPR035439 Uncharacterised protein family UPF0145|Uncharacterised protein family UPF0145/C2CD5 G3DSA:3.30.110.70|MF_00338|PF01906|SSF117782 NJ56_RS17100 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR024289 Domain of unknown function DUF3828 PF12883 NJ56_RS17105 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 NJ56_RS17110 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001320|IPR001638|IPR005768|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site|Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0004970|GO:0005215|GO:0006810|GO:0016020|GO:0030288 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850|TIGR01096 NJ56_RS17115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS17120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS17125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001320|IPR001638|IPR005768|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site|Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0004970|GO:0005215|GO:0006810|GO:0016020|GO:0030288 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850|TIGR01096 NJ56_RS17130 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010280|IPR011825|IPR029063|IPR030390|IPR030391 (Uracil-5)-methyltransferase family|23S rRNA (uracil(747)-C(5))-methyltransferase RlmC|RNA methyltransferase TrmA, active site|RNA methyltransferase TrmA, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0006396|GO:0008173|GO:0016070|GO:0016436 G3DSA:3.40.50.150|MF_01012|PF05958|PS01230|PS01231|SSF53335|TIGR02085 NJ56_RS17135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019703 Protein of unknown function DUF2593 PF10767 NJ56_RS17140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS17145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS17150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR005893|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Spermidine/putrescine ABC transporter, ATP-binding subunit|Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0015417|GO:0015846|GO:0016820|GO:0016887|GO:0043190 G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540|TIGR01187 NJ56_RS17155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 G3DSA:3.40.190.10|PF13416|PIRSF019574|PR00909|SSF53850 NJ56_RS17160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019660 Putative sensory transduction regulator YbjN PF10722 NJ56_RS17165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010815 Protein of unknown function DUF1418 PF07214 NJ56_RS17170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002109|IPR011767|IPR011902|IPR012336|IPR014025 Glutaredoxin|Glutaredoxin active site|Glutaredoxin subgroup|Glutaredoxin, GrxA|Thioredoxin-like fold GO:0009055|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00462|PR00160|PS00195|SSF52833|TIGR02183 NJ56_RS17175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006037|IPR006512|IPR023017 Regulator of K+ conductance, C-terminal|Transport protein YbjL, putative|YidE/YbjL duplication GO:0006813|GO:0008324 G3DSA:3.30.70.1450|MF_01015|PF02080|PF06826|SSF116726|TIGR01625 NJ56_RS17180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase G3DSA:1.20.144.10|PF01569|SSF48317 NJ56_RS17185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase G3DSA:1.20.144.10|PF01569|SM00014|SSF48317 NJ56_RS17190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002915|IPR011343|IPR013785|IPR028581 Aldolase-type TIM barrel|DeoC/FbaB/ lacD aldolase|Deoxyribose-phosphate aldolase|Deoxyribose-phosphate aldolase type I GO:0003824|GO:0004139|GO:0005737|GO:0009264|GO:0016829 G3DSA:3.20.20.70|MF_00114|PF01791|PIRSF001357|SM01133|SSF51569|TIGR00126 NJ56_RS17195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001034|IPR011991|IPR014036|IPR018356 DeoR C-terminal sensor domain|DeoR-type HTH domain|Transcription regulator, HTH DeoR-type, conserved site|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.1360|PF00455|PF08220|PS00894|SM00420|SM01134|SSF100950 NJ56_RS17200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004694 Hydroxy amino acid transporter GO:0005215|GO:0006810|GO:0016021 TIGR00814 NJ56_RS17205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004644|IPR005130|IPR005131|IPR029009 Allosteric substrate binding domain|Iron-sulphur-dependent L-serine dehydratase single chain form|Serine dehydratase beta chain|Serine dehydratase-like, alpha subunit GO:0003941|GO:0006094|GO:0051539 G3DSA:1.10.4100.10|G3DSA:3.30.1330.90|PF03313|PF03315|SSF143548|TIGR00720 NJ56_RS17210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001967|IPR012338|IPR012907|IPR015956|IPR018044 Beta-lactamase/transpeptidase-like|Penicillin-binding protein-associated|Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0004180|GO:0006508|GO:0009002 G3DSA:2.60.410.10|G3DSA:3.40.710.10|PF00768|PF07943|PR00725|SM00936|SSF56601|SSF69189 NJ56_RS17215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR001216|IPR001926 CBS domain|Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0006535 G3DSA:3.10.580.10|G3DSA:3.40.50.1100|PF00291|PF00571|PS00901|SM00116|SSF53686|SSF54631 NJ56_RS17220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000277|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383 NJ56_RS17225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005123|IPR026992|IPR027443 Isopenicillin N synthase-like|Non-haem dioxygenase N-terminal domain|Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 G3DSA:2.60.120.330|PF03171|PF14226|PR00682|SSF51197 NJ56_RS17230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006385|IPR023214 HAD-like domain|HAD-superfamily hydrolase, subfamily IB, SerB1-like G3DSA:1.20.1440.100|G3DSA:3.40.50.1000|PF12710|SSF56784|TIGR01488|TIGR01490 NJ56_RS17235 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004045|IPR004046|IPR010987|IPR012336 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 NJ56_RS17240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001509|IPR016040 NAD(P)-binding domain|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|SSF51735 NJ56_RS17245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011322|IPR013115|IPR013820|IPR015867|IPR018198|IPR020621 ATP phosphoribosyltransferase HisG, long form|ATP phosphoribosyltransferase, catalytic domain|ATP phosphoribosyltransferase, conserved site|Histidine biosynthesis HisG, C-terminal|Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 G3DSA:3.30.70.120|G3DSA:3.40.190.10|MF_00079|PF01634|PF08029|PS01316|SSF53850|SSF54913|TIGR00070|TIGR03455 NJ56_RS17250 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001692|IPR012131|IPR016161|IPR022695 Aldehyde/histidinol dehydrogenase|Histidinol dehydrogenase|Histidinol dehydrogenase, conserved site|Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008152|GO:0008270|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.1980|MF_01024|PF00815|PIRSF000099|PR00083|PS00611|SSF53720|TIGR00069 NJ56_RS17255 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001917|IPR004839|IPR005861|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferase, class-II, pyridoxal-phosphate binding site|Histidinol-phosphate aminotransferase family|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0000105|GO:0003824|GO:0004400|GO:0008152|GO:0009058|GO:0016740|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01023|PF00155|PS00599|SSF53383|TIGR01141 NJ56_RS17260 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000807|IPR005954|IPR006543|IPR006549|IPR020565|IPR020566|IPR020568|IPR023214 HAD-like domain|HAD-superfamily hydrolase,subfamily IIIA|Histidine biosynthesis bifunctional protein HisB|Histidinol-phosphatase|Histidinol-phosphate phosphatase|Imidazoleglycerol-phosphate dehydratase|Imidazoleglycerol-phosphate dehydratase, conserved site|Ribosomal protein S5 domain 2-type fold GO:0000105|GO:0004401|GO:0004424|GO:0005737|GO:0016791 G3DSA:3.30.230.40|G3DSA:3.40.50.1000|MF_00076|MF_01022|PF00475|PF13242|PS00954|PS00955|SSF54211|SSF56784|TIGR01261|TIGR01656|TIGR01662 NJ56_RS17265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010139|IPR017926|IPR029062 Class I glutamine amidotransferase-like|Glutamine amidotransferase|Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 G3DSA:3.40.50.880|MF_00278|PF00117|PIRSF000495|PR00096|SSF52317|TIGR01855 NJ56_RS17270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006062|IPR006063|IPR011060|IPR013785|IPR023016 Aldolase-type TIM barrel|Histidine biosynthesis|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA|Ribulose-phosphate binding barrel GO:0000105|GO:0003824|GO:0003949|GO:0008152 G3DSA:3.20.20.70|MF_01014|PF00977|SSF51366|TIGR00007 NJ56_RS17275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004651|IPR006062|IPR011060|IPR013785 Aldolase-type TIM barrel|Histidine biosynthesis|Histidine biosynthesis, HisF|Ribulose-phosphate binding barrel GO:0000105|GO:0000107|GO:0003824|GO:0005737|GO:0008152 G3DSA:3.20.20.70|MF_01013|PF00977|SSF51366|TIGR00735 NJ56_RS17280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002496|IPR008179|IPR021130|IPR023019 Histidine biosynthesis bifunctional protein HisIE|Phosphoribosyl-AMP cyclohydrolase domain|Phosphoribosyl-ATP pyrophosphohydrolase|Phosphoribosyl-ATP pyrophosphohydrolase-like GO:0000105|GO:0004635|GO:0004636 G3DSA:1.10.287.1080|MF_01019|MF_01020|PD002610|PF01502|PF01503|SSF101386|SSF141734|TIGR03188 NJ56_RS17285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006113|IPR006114|IPR006115|IPR006183|IPR006184|IPR008927|IPR013328|IPR016040 6-phosphogluconate dehydrogenase|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, C-terminal|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, decarboxylating|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate-binding site|NAD(P)-binding domain GO:0004616|GO:0006098|GO:0016491|GO:0055114 G3DSA:1.10.1040.10|G3DSA:1.20.5.320|G3DSA:3.40.50.720|PF00393|PF03446|PIRSF000109|PR00076|PS00461|SM01350|SSF48179|SSF51735|TIGR00873 NJ56_RS17290 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005835|IPR029044 Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain GO:0009058|GO:0016779 G3DSA:3.90.550.10|PF00483|SSF53448 NJ56_RS17295 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005771|IPR005835|IPR029044 Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011|GO:0009058|GO:0016779 G3DSA:3.90.550.10|PF00483|SSF53448|TIGR01099 NJ56_RS17300 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR005170|IPR005496|IPR016166|IPR016169 CBS domain|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD-binding, type 2|Integral membrane protein TerC|Transporter-associated domain GO:0003824|GO:0016021|GO:0016614|GO:0050660|GO:0055114 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|PF03741|SM01091|SSF54631|SSF56176 NJ56_RS17305 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004669|IPR018385 C4-dicarboxylate anaerobic carrier|C4-dicarboxylate anaerobic carrier-like GO:0015556|GO:0015740|GO:0016021 PF03606|TIGR00771 NJ56_RS17310 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007844 AsmA PF05170 NJ56_RS17315 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011962|IPR029054 dCTP deaminase|dUTPase-like GO:0006229|GO:0008829 G3DSA:2.70.40.10|MF_00146|PF00692|SSF51283|TIGR02274 NJ56_RS17320 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000764|IPR006083|IPR026008|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Phosphoribulokinase/uridine kinase|Uridine kinase|Uridine kinase-like GO:0004849|GO:0005524|GO:0008152|GO:0016301|GO:0016773 G3DSA:3.40.50.300|MF_00551|PF00485|PR00988|SSF52540|TIGR00235 NJ56_RS17325 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000808|IPR019591|IPR027417|IPR033756|IPR034904 Fe-S cluster assembly domain|Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35|Mrp, conserved site|Mrp/NBP35 ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|MF_02040|PF10609|PS01215|SSF117916|SSF52540 NJ56_RS17330 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001412|IPR002547|IPR004495|IPR009080|IPR012340|IPR014729|IPR014758|IPR015413|IPR023458|IPR029038|IPR033911 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Methionine-tRNA ligase, type 1|Methioninyl-tRNA synthetase core domain|Methionyl-tRNA synthetase|Methionyl-tRNA synthetase, Zn-domain|Methionyl-tRNA synthetase, beta subunit, C-terminal|Methionyl/Leucyl tRNA synthetase|Nucleic acid-binding, OB-fold|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-binding domain GO:0000049|GO:0000166|GO:0004812|GO:0004825|GO:0005524|GO:0005737|GO:0006418|GO:0006431 G3DSA:1.10.730.10|G3DSA:2.170.220.10|G3DSA:2.20.28.20|G3DSA:2.40.50.140|G3DSA:3.40.50.620|MF_00098|PF01588|PF09334|PR01041|PS00178|SSF47323|SSF50249|SSF52374|SSF57770|TIGR00398|TIGR00399 NJ56_RS17340 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005538|IPR022957 LrgA/CidA family|Uncharacterised protein family UPF0299 GO:0016021 MF_01144|PF03788 NJ56_RS17345 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005261|IPR007300 CidB/LrgB family|Conserved hypothetical protein CHP00659 PF04172|TIGR00659 NJ56_RS17350 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002125|IPR006263|IPR013171|IPR016192|IPR016193|IPR020797 APOBEC/CMP deaminase, zinc-binding|Cytidine and deoxycytidylate deaminase domain|Cytidine deaminase, bacteria|Cytidine deaminase, homodimeric|Cytidine deaminase-like|Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0003824|GO:0004126|GO:0008270|GO:0009972|GO:0016787 G3DSA:3.40.140.10|MF_01558|PF00383|PF08211|PIRSF006334|PS00903|SSF53927|TIGR01355 NJ56_RS17355 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 NJ56_RS17360 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 NJ56_RS17365 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001891|IPR012301|IPR012302|IPR015884|IPR016040|IPR023667 Malic enzyme, N-terminal domain|Malic enzyme, NAD-binding|Malic enzyme, conserved site|Malic oxidoreductase|NAD(P)-binding domain|NAD-dependent malic enzyme, proteobacteria GO:0004470|GO:0004471|GO:0051287|GO:0055114 G3DSA:3.40.50.10380|G3DSA:3.40.50.720|MF_01619|PF00390|PF03949|PIRSF000106|PR00072|PS00331|SM00919|SM01274|SSF51735|SSF53223 NJ56_RS17370 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003848|IPR014729|IPR023604 Domain of unknown function DUF218|Rossmann-like alpha/beta/alpha sandwich fold|Uncharacterised protein family SanA G3DSA:3.40.50.620|PF02698|PIRSF005011 NJ56_RS17375 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001851|IPR035568 ABC transporter, FecCD/TroCD-like|ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 G3DSA:1.10.3470.10|PF02653 NJ56_RS17380 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS17385 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025997|IPR028082 Periplasmic binding protein|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13407|SSF53822 NJ56_RS17390 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PR00036|PS00356|SM00354|SSF47413|SSF53822 NJ56_RS17395 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007349 Domain of unknown function DUF418 PF04235 NJ56_RS17400 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001474|IPR018234|IPR020602 GTP cyclohydrolase I|GTP cyclohydrolase I domain|GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 G3DSA:1.10.286.10|G3DSA:3.30.1130.10|MF_00223|PF01227|PS00859|PS00860|SSF55620|TIGR00063 NJ56_RS17405 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010645|IPR020846 Major facilitator superfamily domain|Uncharacterised MFS-type transporter YbfB G3DSA:1.20.1250.20|PF06779|SSF103473 NJ56_RS17410 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000847|IPR005119|IPR011991 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 NJ56_RS17415 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002328|IPR011032|IPR013149|IPR013154|IPR014183|IPR016040|IPR020843 Alcohol dehydrogenase class III|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain GO:0006069|GO:0008270|GO:0016491|GO:0051903|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|SM00829|SSF50129|SSF51735|TIGR02818 NJ56_RS17420 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000801|IPR014186|IPR029058 Alpha/Beta hydrolase fold|Putative esterase|S-formylglutathione hydrolase GO:0018738|GO:0046294 G3DSA:3.40.50.1820|PF00756|SSF53474|TIGR02821 NJ56_RS17425 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010323|IPR011990 Protein of unknown function DUF924|Tetratricopeptide-like helical domain GO:0005515 G3DSA:1.20.58.320|PF06041|SSF48452 NJ56_RS17430 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001453|IPR005110|IPR005111|IPR008284 MoaB/Mog domain|MoeA, C-terminal, domain IV|MoeA, N-terminal and linker domain|Molybdenum cofactor biosynthesis, conserved site GO:0006777|GO:0032324 G3DSA:2.170.190.11|G3DSA:2.40.340.10|G3DSA:3.40.980.10|G3DSA:3.90.105.10|PF00994|PF03453|PF03454|PS01079|SM00852|SSF53218|SSF63867|SSF63882|TIGR00177 NJ56_RS17435 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000594|IPR012730 Molybdopterin synthase sulfurylase MoeB|THIF-type NAD/FAD binding fold GO:0006777|GO:0008641 G3DSA:3.40.50.720|PF00899|SSF69572|TIGR02355 NJ56_RS17440 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12848|SM00382|SSF52540 NJ56_RS17445 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002524|IPR027470 Cation efflux protein|Cation efflux protein, cytoplasmic domain GO:0006812|GO:0008324|GO:0016021|GO:0055085 G3DSA:1.20.1510.10|G3DSA:3.30.70.1350|PF01545|PF16916|SSF160240|SSF161111|TIGR01297 NJ56_RS17455 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000644|IPR006667 CBS domain|SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 G3DSA:1.10.357.20|G3DSA:3.10.580.10|PF00571|PF01769|SSF161093|SSF54631 NJ56_RS17460 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000758|IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel|Virulence-related outer membrane protein GO:0009279|GO:0016021 G3DSA:2.40.160.20|PF06316|PR00316|PS00694|SSF56925 NJ56_RS17465 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS17470 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023149|IPR023506|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|Trans-aconitate 2-methyltransferase|Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 G3DSA:1.10.150.290|G3DSA:3.40.50.150|MF_00560|PF13649|SSF53335 NJ56_RS17475 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002177|IPR008331|IPR009078|IPR012347|IPR023067|IPR023188 DNA protection during starvation protein, gammaproteobacteria|DNA-binding protein Dps|DNA-binding protein Dps, conserved site|Ferritin-like superfamily|Ferritin-related|Ferritin/DPS protein domain GO:0006879|GO:0006950|GO:0008199|GO:0016722|GO:0055114 G3DSA:1.20.1260.10|MF_01441|PF00210|PIRSF005900|PR01346|PS00818|SSF47240 NJ56_RS17480 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001320|IPR001638|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site GO:0004970|GO:0005215|GO:0006810|GO:0016020 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850 NJ56_RS17485 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR010065 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 NJ56_RS17490 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 NJ56_RS17495 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010286|IPR016909|IPR029063 Ribosomal RNA large subunit methyltransferase F|Ribosomal RNA large subunit methyltransferase F-like|S-adenosyl-L-methionine-dependent methyltransferase GO:0005737|GO:0006364|GO:0008168|GO:0008988 G3DSA:3.40.50.150|MF_01848|PF05971|PIRSF029038|SSF53335 NJ56_RS17500 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000312|IPR017459 Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase, family 3 GO:0008152|GO:0016757 G3DSA:1.20.970.10|G3DSA:3.40.1030.10|PF00591|PF02885|SSF47648|SSF52418 NJ56_RS17505 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006555|IPR010614|IPR014001|IPR027417 ATP-dependent helicase, C-terminal|DEAD2|Helicase superfamily 1/2, ATP-binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006139|GO:0008026|GO:0016818 G3DSA:3.40.50.300|PF06733|PF13307|SM00487|SM00491|SSF52540 NJ56_RS17510 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001702|IPR001897 Porin, Gram-negative type|Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 G3DSA:2.40.160.10|PF00267|PR00182|PR00183|SSF56935 NJ56_RS17515 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 NJ56_RS17525 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000310|IPR005308|IPR008286|IPR011193|IPR015421|IPR015422|IPR015424 Orn/Lys/Arg decarboxylase, C-terminal|Orn/Lys/Arg decarboxylase, N-terminal|Orn/Lys/Arg decarboxylase, major domain|Ornithine/lysine/arginine decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824|GO:0005737|GO:0006520|GO:0016831 G3DSA:3.40.50.2300|G3DSA:3.40.640.10|G3DSA:3.90.100.10|G3DSA:3.90.1150.10|PF01276|PF03709|PF03711|PIRSF009393|PS00703|SSF53383|SSF55904 NJ56_RS17530 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PF13520|PIRSF006060 NJ56_RS17535 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098 NJ56_RS17540 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 NJ56_RS17545 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR001991 ABC transporter type 1, transmembrane domain MetI-like|Sodium:dicarboxylate symporter GO:0006810|GO:0015293|GO:0016020|GO:0016021 G3DSA:1.10.3720.10|PF00528|PR00173|SSF161098 NJ56_RS17550 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 G3DSA:3.40.190.10|G3DSA:3.40.190.120|PF04069|SSF53850 NJ56_RS17555 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001307|IPR001763 Rhodanese-like domain|Thiosulphate sulfurtransferase, conserved site GO:0004792 G3DSA:3.40.250.10|PF00581|PS00683|SM00450|SSF52821 NJ56_RS17560 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009921 Domain of unknown function DUF1456 PF07308 NJ56_RS17565 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR005769 ABC transporter type 1, transmembrane domain MetI-like|ABC transporter, permease PhnE/PtxC GO:0005887|GO:0006810|GO:0015604|GO:0015716|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01097 NJ56_RS17570 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000515|IPR005769 ABC transporter type 1, transmembrane domain MetI-like|ABC transporter, permease PhnE/PtxC GO:0005887|GO:0006810|GO:0015604|GO:0015716|GO:0016020 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01097 NJ56_RS17575 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005770|IPR017797 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein|Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190|GO:0055085 G3DSA:3.40.190.10|PF12974|SSF53850|TIGR01098|TIGR03431 NJ56_RS17580 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003439|IPR003593|IPR012693|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter, phosphonate import, PhnC|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015416|GO:0015716|GO:0016020|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR02315 NJ56_RS17585 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007341 Transglycosylase-associated protein GO:0016021 PF04226 NJ56_RS17590 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR020941 Suppressor of fused-like domain PF05076 NJ56_RS17595 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002711|IPR003615 HNH endonuclease|HNH nuclease GO:0003676|GO:0004519 G3DSA:3.40.1800.10|PF01844|SM00507 NJ56_RS17600 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR023577|IPR033469 CYTH domain|CYTH-like domain G3DSA:2.40.320.10|PD009560|PF01928|SM01118|SSF55154 NJ56_RS17615 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR026866|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Protein CR006, P-loop domain G3DSA:3.40.50.300|PF13166|SSF52540 NJ56_RS17630 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001207|IPR011991 Transposase, mutator type|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF00872 NJ56_RS17650 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025202 Phospholipase D-like domain G3DSA:3.30.870.10|PF13091|SSF56024 NJ56_RS17655 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR032874 DDE domain PF13610 NJ56_RS17660 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011664 Abortive infection system protein AbiD/AbiF-like PF07751 NJ56_RS17665 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982|IPR027910 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain|YdiL-like domain GO:0003677|GO:0043565 G3DSA:1.10.3100.10|PF01381|SM00530|SSF47413 NJ56_RS17685 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012931 TraG-like, N-terminal PF07916 NJ56_RS17690 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010927 Type IV conjugative transfer system protein TraH PF06122 NJ56_RS17695 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012336 Thioredoxin-like fold G3DSA:3.40.30.10|PF13728|SSF52833 NJ56_RS17700 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013229 PEGA PF08308 NJ56_RS17705 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR015927|IPR019533 Peptidase S24/S26A/S26B/S26C|Peptidase S26 G3DSA:2.10.109.10|PF10502|SSF51306 NJ56_RS17710 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC PF09673 NJ56_RS17715 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009649 TraU PF06834 NJ56_RS17725 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN PF06986 NJ56_RS17735 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002789|IPR025955|IPR027417 Helicase HerA, central domain|P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:3.40.50.300|PF01935|PF11130|SSF52540 NJ56_RS17740 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014118 Type IV conjugative transfer system protein TraV PF09676 NJ56_RS17745 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI PF03743 NJ56_RS17750 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010563 Pilus assembly TraK PF06586 NJ56_RS17755 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007973 Pilus assembly TraE GO:0000746 PF05309 NJ56_RS17770 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012336|IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin-like fold G3DSA:3.10.450.70|G3DSA:3.40.30.10|PF10411|PF13098|SSF52833|SSF54423 NJ56_RS17780 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013321 Arc-type ribbon-helix-helix GO:0006355 G3DSA:1.10.1220.10 NJ56_RS17805 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540 NJ56_RS17810 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR013741 Repressor KorB domain G3DSA:3.90.1530.10|PF08535|SSF109709 NJ56_RS17870 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain GO:0046983 G3DSA:4.10.280.10 NJ56_RS17875 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|G3DSA:3.90.120.10|PF00145|SSF53335 NJ56_RS17890 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR021944 Protein of unknown function DUF3560 PF12083 NJ56_RS17895 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009241 Toxin HigB-like PF05973 NJ56_RS17900 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982|IPR011991 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.1190.10|PF01381|SM00530|SSF47413 NJ56_RS17935 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR019476|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system coupling protein TraD, DNA-binding domain G3DSA:3.40.50.300|PF10412|SSF52540 NJ56_RS17940 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014059|IPR014862|IPR027417 Conjugative relaxase, N-terminal|P-loop containing nucleoside triphosphate hydrolase|TrwC relaxase G3DSA:3.40.50.300|PF08751|PF13604|SSF52540|SSF55464|TIGR02686 NJ56_RS17945 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007560|IPR011335 Restriction endonuclease type II-like|Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 G3DSA:3.40.1350.10|PF04471|SSF52980 NJ56_RS17960 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008258|IPR023346 Lysozyme-like domain|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 NJ56_RS17970 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 PF00816 NJ56_RS17980 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR002104|IPR011010|IPR013762|IPR016423 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain|Resolvase, Rsv GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|PIRSF004576|SSF56349 NJ56_RS18010 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic G3DSA:1.10.260.40 NJ56_RS18030 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006118|IPR006119|IPR011991 Recombinase, conserved site|Resolvase, N-terminal catalytic domain|Winged helix-turn-helix DNA-binding domain GO:0000150|GO:0003677|GO:0006310 G3DSA:1.10.10.10|G3DSA:3.40.50.1390|PF00239|PF13384|PS00397|PS00398|SM00857|SSF53041 NJ56_RS18045 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012340 Nucleic acid-binding, OB-fold G3DSA:2.40.50.140|SSF50249 NJ56_RS18050 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540 NJ56_RS18055 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003115|IPR004437|IPR010575|IPR013741 KorB, C-terminal|ParB/RepB/Spo0J partition protein family|ParB/Sulfiredoxin|Repressor KorB domain GO:0003677|GO:0045892 G3DSA:1.10.10.730|G3DSA:2.30.30.150|G3DSA:3.90.1530.10|PF08535|SM00470|SSF109709|SSF110849|TIGR00180 NJ56_RS18070 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001126|IPR017961|IPR025188 DNA polymerase, Y-family, little finger domain|Domain of unknown function DUF4113|UmuC domain GO:0003684|GO:0006281 G3DSA:1.10.150.20|G3DSA:3.30.1490.100|G3DSA:3.30.70.270|PF00817|PF11799|PF13438|SSF100879|SSF56672 NJ56_RS18075 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR006197|IPR015927 Peptidase S24, LexA-like|Peptidase S24/S26A/S26B/S26C GO:0003677|GO:0006355 G3DSA:2.10.109.10|PF00717|PR00726|SSF51306 NJ56_RS18080 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003115 ParB/Sulfiredoxin G3DSA:1.10.10.730|G3DSA:3.90.1530.10|PF02195|SM00470|SSF109709|SSF110849 NJ56_RS18085 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009385 Plasmid SOS inhibition PF06290 NJ56_RS18090 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009713 Uncharacterised protein family PsiA PF06952 NJ56_RS18115 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR031339 Domain of unknown function DUF4942 PF13708 NJ56_RS18120 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009241|IPR035095 Toxin HigB-like|Toxin RelE-like domain G3DSA:3.30.2310.20|PF05973|SSF143011 NJ56_RS18125 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR001387|IPR010982|IPR011991 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.1190.10|PF01381|SM00530|SSF47413 NJ56_RS18135 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008258|IPR023346 Lysozyme-like domain|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 NJ56_RS18140 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007925|IPR010992 Integration host factor (IHF)-like DNA-binding domain|Relaxosome protein TraM GO:0000746|GO:0003677 G3DSA:1.10.10.450|PD008204|PF05261|SSF140581|SSF47729 NJ56_RS18145 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000792|IPR011991|IPR013656|IPR016032 PAS fold-4|Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.20|PF00196|PF08448|PR00038|PS00622|SM00421|SSF46894 NJ56_RS18150 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008876 Relaxosome protein TraY GO:0000746|GO:0003677 PF05509 NJ56_RS18155 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR008873 TraA GO:0000746|GO:0005576 PF05513|TIGR02758 NJ56_RS18160 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009838|IPR016382 Pilus assembly, TraL|Type IV conjugative transfer system, protein TraL GO:0000746|GO:0009279|GO:0009297|GO:0019867 PF07178|PIRSF003259|TIGR02762 NJ56_RS18165 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007973 Pilus assembly TraE GO:0000746 PF05309|TIGR02761 NJ56_RS18170 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010563|IPR014126 Pilus assembly TraK|Type-F conjugative transfer system secretin TraK PF06586|TIGR02756 NJ56_RS18175 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI G3DSA:1.20.5.340|PF03743 NJ56_RS18180 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014118 Type IV conjugative transfer system protein TraV PF09676|TIGR02747 NJ56_RS18185 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014117|IPR025955|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:3.40.50.300|PF11130|SSF52540|TIGR02746 NJ56_RS18190 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014115 Type-F conjugative transfer system protein TrbI PF09677|TIGR02744 NJ56_RS18195 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014114|IPR025864 Type-F conjugative transfer system protein TraW|Type-F conjugative transfer system protein TraW N-terminal domain PF12477|TIGR02743 NJ56_RS18200 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009649 TraU PF06834 NJ56_RS18205 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014113|IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC|Type-F conjugative transfer system pilin assembly protein TrbC, subgroup PF09673|TIGR02742 NJ56_RS18210 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN PF06986|TIGR02750 NJ56_RS18215 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014110 Type-F conjugative transfer system pilin assembly protein TraF PF13728|TIGR02739 NJ56_RS18220 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012336|IPR014109 Thioredoxin-like fold|Type-F conjugative transfer system pilin assembly thiol-disulphide isomerase TrbB G3DSA:3.40.30.10|PF13728|SSF52833|TIGR02738 NJ56_RS18225 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR010927 Type IV conjugative transfer system protein TraH PF06122 NJ56_RS18230 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR012931 TraG-like, N-terminal PF07916 NJ56_RS18240 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014128|IPR019476|IPR022585|IPR027417 P-loop containing nucleoside triphosphate hydrolase|TraD coupling protein, N-terminal|Type IV conjugative transfer system, coupling protein TraD|Type IV secretion system coupling protein TraD, DNA-binding domain GO:0000746 G3DSA:3.40.50.300|PF10412|PF12615|SSF52540|TIGR02759 NJ56_RS18245 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR009767|IPR014059|IPR014129|IPR014862|IPR027417 Conjugative relaxase, N-terminal|Conjugative transfer relaxase protein TraI|DNA helicase, TraI type|P-loop containing nucleoside triphosphate hydrolase|TrwC relaxase GO:0000746|GO:0003677|GO:0003678|GO:0005524|GO:0016818 G3DSA:3.40.50.300|PF07057|PF08751|PF13604|SSF52540|SSF55464|TIGR02686|TIGR02760 NJ56_RS18265 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR003314|IPR009061|IPR011991 Mu-type HTH domain|Putative DNA-binding domain|Winged helix-turn-helix DNA-binding domain GO:0003677 G3DSA:1.10.10.10|PF02316|SSF46955 NJ56_RS18270 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR025202 Phospholipase D-like domain G3DSA:3.30.870.10|PF13091|SSF56024 NJ56_RS18275 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR007842 HEPN domain G3DSA:1.20.120.330|PF05168|SSF81593 NJ56_RS18280 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR014966 FRG domain PF08867|SM00901 NJ56_RS18285 /data/g2d_mirror/Yersinia_ruckeri_SC09/ASM77535v2_genomic IPR000525|IPR011991 Initiator Rep protein|Winged helix-turn-helix DNA-binding domain GO:0003887|GO:0005727|GO:0006270 G3DSA:1.10.10.10|PF01051|SSF46785