locus-tag class description D5125_RS00010 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS00020 PF17092 Penicillin-binding protein OB-like domain D5125_RS00020 PF00912 Transglycosylase D5125_RS00020 PF00905 Penicillin binding protein transpeptidase domain D5125_RS00025 PF00072 Response regulator receiver domain D5125_RS00025 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS00025 PF00672 HAMP domain D5125_RS00025 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_RS00025 PF01627 Hpt domain D5125_RS00030 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS00030 PF00072 Response regulator receiver domain D5125_RS00040 PF00999 Sodium/hydrogen exchanger family D5125_RS00045 PF01207 Dihydrouridine synthase (Dus) D5125_RS00050 PF00293 NUDIX domain D5125_RS00065 PF04356 Protein of unknown function (DUF489) D5125_RS00070 PF00717 Peptidase S24-like D5125_RS00075 PF11798 IMS family HHH motif D5125_RS00075 PF11799 impB/mucB/samB family C-terminal domain D5125_RS00075 PF00817 impB/mucB/samB family D5125_RS00075 PF13438 Domain of unknown function (DUF4113) D5125_RS00085 PF13247 4Fe-4S dicluster domain D5125_RS00085 PF12800 4Fe-4S binding domain D5125_RS00090 PF00384 Molybdopterin oxidoreductase D5125_RS00090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5125_RS00090 PF01568 Molydopterin dinucleotide binding domain D5125_RS00100 PF00176 SNF2 family N-terminal domain D5125_RS00100 PF00271 Helicase conserved C-terminal domain D5125_RS00100 PF12419 SNF2 Helicase protein D5125_RS00110 PF02719 Polysaccharide biosynthesis protein D5125_RS00115 PF02397 Bacterial sugar transferase D5125_RS00120 PF01370 NAD dependent epimerase/dehydratase family D5125_RS00125 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS00125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5125_RS00130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5125_RS00130 PF00361 Proton-conducting membrane transporter D5125_RS00130 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5125_RS00130 PF13244 Domain of unknown function (DUF4040) D5125_RS00135 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_RS00140 PF00361 Proton-conducting membrane transporter D5125_RS00145 PF01899 Na+/H+ ion antiporter subunit D5125_RS00150 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5125_RS00155 PF03334 Na+/H+ antiporter subunit D5125_RS00160 PF01625 Peptide methionine sulfoxide reductase D5125_RS00165 PF00034 Cytochrome c D5125_RS00175 PF00672 HAMP domain D5125_RS00175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS00175 PF01627 Hpt domain D5125_RS00175 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS00175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS00175 PF00072 Response regulator receiver domain D5125_RS00205 PF00072 Response regulator receiver domain D5125_RS00210 PF00072 Response regulator receiver domain D5125_RS00210 PF01627 Hpt domain D5125_RS00210 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_RS00210 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS00210 PF00672 HAMP domain D5125_RS00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS00215 PF07690 Major Facilitator Superfamily D5125_RS00235 PF01496 V-type ATPase 116kDa subunit family D5125_RS00250 PF01991 ATP synthase (E/31 kDa) subunit D5125_RS00255 PF02874 ATP synthase alpha/beta family, beta-barrel domain D5125_RS00255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_RS00255 PF16886 ATPsynthase alpha/beta subunit N-term extension D5125_RS00260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_RS00270 PF01258 Prokaryotic dksA/traR C4-type zinc finger D5125_RS00275 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5125_RS00280 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D5125_RS00290 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding D5125_RS00290 PF01628 HrcA protein C terminal domain D5125_RS00295 PF01513 ATP-NAD kinase D5125_RS00300 PF02463 RecF/RecN/SMC N terminal domain D5125_RS00315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5125_RS00315 PF00205 Thiamine pyrophosphate enzyme, central domain D5125_RS00315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D5125_RS00320 PF00361 Proton-conducting membrane transporter D5125_RS00325 PF00361 Proton-conducting membrane transporter D5125_RS00325 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus D5125_RS00330 PF00361 Proton-conducting membrane transporter D5125_RS00330 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5125_RS00335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_RS00345 PF12838 4Fe-4S dicluster domain D5125_RS00350 PF00146 NADH dehydrogenase D5125_RS00355 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal D5125_RS00355 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D5125_RS00355 PF00384 Molybdopterin oxidoreductase D5125_RS00360 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5125_RS00360 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D5125_RS00360 PF10531 SLBB domain D5125_RS00370 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D5125_RS00375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D5125_RS00380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_RS00385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D5125_RS00390 PF01209 ubiE/COQ5 methyltransferase family D5125_RS00395 PF07885 Ion channel D5125_RS00395 PF00027 Cyclic nucleotide-binding domain D5125_RS00420 PF00361 Proton-conducting membrane transporter D5125_RS00420 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D5125_RS00420 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5125_RS00420 PF13244 Domain of unknown function (DUF4040) D5125_RS00435 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5125_RS00440 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_RS00445 PF00361 Proton-conducting membrane transporter D5125_RS00450 PF01899 Na+/H+ ion antiporter subunit D5125_RS00455 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5125_RS00465 PF01844 HNH endonuclease D5125_RS00490 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D5125_RS00490 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5125_RS00490 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS00495 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D5125_RS00500 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D5125_RS00500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D5125_RS00510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_RS00515 PF00146 NADH dehydrogenase D5125_RS00520 PF00361 Proton-conducting membrane transporter D5125_RS00525 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_RS00530 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D5125_RS00545 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5125_RS00550 PF01899 Na+/H+ ion antiporter subunit D5125_RS00560 PF01966 HD domain D5125_RS00565 PF00753 Metallo-beta-lactamase superfamily D5125_RS00565 PF03772 Competence protein D5125_RS00575 PF00155 Aminotransferase class I and II D5125_RS00580 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D5125_RS00580 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_RS00580 PF14602 Hexapeptide repeat of succinyl-transferase D5125_RS00595 PF07670 Nucleoside recognition D5125_RS00600 PF00877 NlpC/P60 family D5125_RS00605 PF12008 Type I restriction and modification enzyme - subunit R C terminal D5125_RS00605 PF18766 SWI2/SNF2 ATPase D5125_RS00605 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_RS00625 PF02384 N-6 DNA Methylase D5125_RS00625 PF12161 HsdM N-terminal domain D5125_RS00680 PF01578 Cytochrome C assembly protein D5125_RS00690 PF03100 CcmE D5125_RS00695 PF01383 CpcD/allophycocyanin linker domain D5125_RS00695 PF00970 Oxidoreductase FAD-binding domain D5125_RS00695 PF00175 Oxidoreductase NAD-binding domain D5125_RS00700 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) D5125_RS00710 PF00171 Aldehyde dehydrogenase family D5125_RS00720 PF00202 Aminotransferase class-III D5125_RS00725 PF01546 Peptidase family M20/M25/M40 D5125_RS00725 PF07687 Peptidase dimerisation domain D5125_RS00730 PF00484 Carbonic anhydrase D5125_RS00735 PF06832 Penicillin-Binding Protein C-terminus Family D5125_RS00735 PF00905 Penicillin binding protein transpeptidase domain D5125_RS00735 PF00912 Transglycosylase D5125_RS00740 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain D5125_RS00740 PF11974 Bacterial alpha-2-macroglobulin MG3 domain D5125_RS00740 PF07703 Alpha-2-macroglobulin bait region domain D5125_RS00740 PF17962 Bacterial macroglobulin domain 6 D5125_RS00740 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain D5125_RS00740 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain D5125_RS00740 PF00207 Alpha-2-macroglobulin family D5125_RS00740 PF01835 MG2 domain D5125_RS00745 PF00437 Type II/IV secretion system protein D5125_RS00750 PF00005 ABC transporter D5125_RS00750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D5125_RS00760 PF00528 Binding-protein-dependent transport system inner membrane component D5125_RS00775 PF01709 Transcriptional regulator D5125_RS00780 PF02075 Crossover junction endodeoxyribonuclease RuvC D5125_RS00785 PF07499 RuvA, C-terminal domain D5125_RS00785 PF01330 RuvA N terminal domain D5125_RS00790 PF17864 RuvB AAA lid domain D5125_RS00790 PF05496 Holliday junction DNA helicase RuvB P-loop domain D5125_RS00790 PF05491 RuvB C-terminal winged helix domain D5125_RS00795 PF03061 Thioesterase superfamily D5125_RS00800 PF01618 MotA/TolQ/ExbB proton channel family D5125_RS00805 PF02472 Biopolymer transport protein ExbD/TolR D5125_RS00815 PF07676 WD40-like Beta Propeller Repeat D5125_RS00815 PF04052 TolB amino-terminal domain D5125_RS00820 PF00691 OmpA family D5125_RS00835 PF06508 Queuosine biosynthesis protein QueC D5125_RS00860 PF01555 DNA methylase D5125_RS00870 PF00849 RNA pseudouridylate synthase D5125_RS00870 PF01479 S4 domain D5125_RS00875 PF12111 Polyribonucleotide phosphorylase C terminal D5125_RS00875 PF10150 Ribonuclease E/G family D5125_RS00875 PF00575 S1 RNA binding domain D5125_RS00880 PF01451 Low molecular weight phosphotyrosine protein phosphatase D5125_RS00885 PF11808 Phosphate regulon sensor protein PhoR D5125_RS00885 PF00989 PAS fold D5125_RS00885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS00885 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS00890 PF00486 Transcriptional regulatory protein, C terminal D5125_RS00890 PF00072 Response regulator receiver domain D5125_RS00900 PF00563 EAL domain D5125_RS00900 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS00900 PF03707 Bacterial signalling protein N terminal repeat D5125_RS00910 PF04998 RNA polymerase Rpb1, domain 5 D5125_RS00910 PF04997 RNA polymerase Rpb1, domain 1 D5125_RS00910 PF05000 RNA polymerase Rpb1, domain 4 D5125_RS00910 PF04983 RNA polymerase Rpb1, domain 3 D5125_RS00910 PF00623 RNA polymerase Rpb1, domain 2 D5125_RS00915 PF04563 RNA polymerase beta subunit D5125_RS00915 PF10385 RNA polymerase beta subunit external 1 domain D5125_RS00915 PF00562 RNA polymerase Rpb2, domain 6 D5125_RS00915 PF04560 RNA polymerase Rpb2, domain 7 D5125_RS00915 PF04561 RNA polymerase Rpb2, domain 2 D5125_RS00915 PF04565 RNA polymerase Rpb2, domain 3 D5125_RS00920 PF16320 Ribosomal protein L7/L12 dimerisation domain D5125_RS00920 PF00542 Ribosomal protein L7/L12 C-terminal domain D5125_RS00925 PF00466 Ribosomal protein L10 D5125_RS00930 PF00687 Ribosomal protein L1p/L10e family D5125_RS00935 PF03946 Ribosomal protein L11, N-terminal domain D5125_RS00935 PF00298 Ribosomal protein L11, RNA binding domain D5125_RS00940 PF02357 Transcription termination factor nusG D5125_RS00940 PF00467 KOW motif D5125_RS00945 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D5125_RS00955 PF03143 Elongation factor Tu C-terminal domain D5125_RS00955 PF03144 Elongation factor Tu domain 2 D5125_RS00955 PF00009 Elongation factor Tu GTP binding domain D5125_RS00980 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D5125_RS00980 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D5125_RS00980 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D5125_RS00985 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D5125_RS00990 PF01195 Peptidyl-tRNA hydrolase D5125_RS00995 PF00814 Glycoprotease family D5125_RS01000 PF01165 Ribosomal protein S21 D5125_RS01010 PF08278 DNA primase DnaG DnaB-binding D5125_RS01010 PF13662 Toprim domain D5125_RS01010 PF08275 DNA primase catalytic core, N-terminal domain D5125_RS01010 PF01807 CHC2 zinc finger D5125_RS01010 PF10410 DnaB-helicase binding domain of primase D5125_RS01015 PF00140 Sigma-70 factor, region 1.2 D5125_RS01015 PF04545 Sigma-70, region 4 D5125_RS01015 PF03979 Sigma-70 factor, region 1.1 D5125_RS01015 PF04546 Sigma-70, non-essential region D5125_RS01015 PF04542 Sigma-70 region 2 D5125_RS01015 PF04539 Sigma-70 region 3 D5125_RS01025 PF17755 UvrA DNA-binding domain D5125_RS01025 PF17760 UvrA interaction domain D5125_RS01030 PF01219 Prokaryotic diacylglycerol kinase D5125_RS01035 PF01521 Iron-sulphur cluster biosynthesis D5125_RS01045 PF02774 Semialdehyde dehydrogenase, dimerisation domain D5125_RS01045 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5125_RS01050 PF03653 Uncharacterised protein family (UPF0093) D5125_RS01065 PF03976 Polyphosphate kinase 2 (PPK2) D5125_RS01070 PF03781 Sulfatase-modifying factor enzyme 1 D5125_RS01075 PF00027 Cyclic nucleotide-binding domain D5125_RS01075 PF07885 Ion channel D5125_RS01090 PF02646 RmuC family D5125_RS01100 PF01850 PIN domain D5125_RS01110 PF01850 PIN domain D5125_RS01145 PF00919 Uncharacterized protein family UPF0004 D5125_RS01145 PF04055 Radical SAM superfamily D5125_RS01155 PF00072 Response regulator receiver domain D5125_RS01165 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS01165 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS01165 PF01627 Hpt domain D5125_RS01165 PF00072 Response regulator receiver domain D5125_RS01165 PF00672 HAMP domain D5125_RS01170 PF00072 Response regulator receiver domain D5125_RS01175 PF00072 Response regulator receiver domain D5125_RS01195 PF08264 Anticodon-binding domain of tRNA D5125_RS01195 PF06827 Zinc finger found in FPG and IleRS D5125_RS01195 PF00133 tRNA synthetases class I (I, L, M and V) D5125_RS01200 PF01252 Signal peptidase (SPase) II D5125_RS01205 PF00478 IMP dehydrogenase / GMP reductase domain D5125_RS01205 PF00571 CBS domain D5125_RS01210 PF00578 AhpC/TSA family D5125_RS01235 PF00155 Aminotransferase class I and II D5125_RS01240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS01240 PF00672 HAMP domain D5125_RS01245 PF12796 Ankyrin repeats (3 copies) D5125_RS01265 PF03466 LysR substrate binding domain D5125_RS01265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_RS01280 PF01230 HIT domain D5125_RS01285 PF13662 Toprim domain D5125_RS01285 PF02132 RecR protein D5125_RS01290 PF02575 YbaB/EbfC DNA-binding family D5125_RS01295 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D5125_RS01295 PF12170 DNA polymerase III tau subunit V interacting with alpha D5125_RS01295 PF12169 DNA polymerase III subunits gamma and tau domain III D5125_RS01305 PF07075 Protein of unknown function (DUF1343) D5125_RS01315 PF00521 DNA gyrase/topoisomerase IV, subunit A D5125_RS01315 PF03989 DNA gyrase C-terminal domain, beta-propeller D5125_RS01320 PF03193 RsgA GTPase D5125_RS01325 PF00929 Exonuclease D5125_RS01330 PF00672 HAMP domain D5125_RS01330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS01335 PF00270 DEAD/DEAH box helicase D5125_RS01335 PF00271 Helicase conserved C-terminal domain D5125_RS01340 PF02559 CarD-like/TRCF domain D5125_RS01340 PF00270 DEAD/DEAH box helicase D5125_RS01340 PF17757 UvrB interaction domain D5125_RS01340 PF00271 Helicase conserved C-terminal domain D5125_RS01340 PF03461 TRCF domain D5125_RS01345 PF12419 SNF2 Helicase protein D5125_RS01345 PF00176 SNF2 family N-terminal domain D5125_RS01345 PF00271 Helicase conserved C-terminal domain D5125_RS01360 PF04362 Bacterial Fe(2+) trafficking D5125_RS01365 PF00730 HhH-GPD superfamily base excision DNA repair protein D5125_RS01365 PF10576 Iron-sulfur binding domain of endonuclease III D5125_RS01365 PF00633 Helix-hairpin-helix motif D5125_RS01365 PF14815 NUDIX domain D5125_RS01370 PF02685 Glucokinase D5125_RS01380 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D5125_RS01380 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D5125_RS01385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5125_RS01395 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D5125_RS01400 PF03334 Na+/H+ antiporter subunit D5125_RS01410 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D5125_RS01415 PF00361 Proton-conducting membrane transporter D5125_RS01420 PF00361 Proton-conducting membrane transporter D5125_RS01430 PF00361 Proton-conducting membrane transporter D5125_RS01435 PF03600 Citrate transporter D5125_RS01440 PF00485 Phosphoribulokinase / Uridine kinase family D5125_RS01450 PF00459 Inositol monophosphatase family D5125_RS01455 PF01464 Transglycosylase SLT domain D5125_RS01455 PF14718 Soluble lytic murein transglycosylase L domain D5125_RS01465 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS01465 PF00072 Response regulator receiver domain D5125_RS01470 PF00072 Response regulator receiver domain D5125_RS01480 PF00072 Response regulator receiver domain D5125_RS01480 PF01627 Hpt domain D5125_RS01480 PF01584 CheW-like domain D5125_RS01480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS01485 PF00809 Pterin binding enzyme D5125_RS01490 PF00004 ATPase family associated with various cellular activities (AAA) D5125_RS01490 PF06480 FtsH Extracellular D5125_RS01490 PF17862 AAA+ lid domain D5125_RS01490 PF01434 Peptidase family M41 D5125_RS01495 PF01728 FtsJ-like methyltransferase D5125_RS01500 PF01985 CRS1 / YhbY (CRM) domain D5125_RS01505 PF01272 Transcription elongation factor, GreA/GreB, C-term D5125_RS01505 PF03449 Transcription elongation factor, N-terminal D5125_RS01510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5125_RS01510 PF02142 MGS-like domain D5125_RS01510 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D5125_RS01515 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D5125_RS01515 PF00117 Glutamine amidotransferase class-I D5125_RS01520 PF16124 RecQ zinc-binding D5125_RS01520 PF00570 HRDC domain D5125_RS01520 PF00270 DEAD/DEAH box helicase D5125_RS01520 PF09382 RQC domain D5125_RS01520 PF00271 Helicase conserved C-terminal domain D5125_RS01530 PF01312 FlhB HrpN YscU SpaS Family D5125_RS01540 PF06339 Ectoine synthase D5125_RS01545 PF00202 Aminotransferase class-III D5125_RS01550 PF00583 Acetyltransferase (GNAT) family D5125_RS01555 PF01047 MarR family D5125_RS01560 PF13614 AAA domain D5125_RS01565 PF01339 CheB methylesterase D5125_RS01565 PF00072 Response regulator receiver domain D5125_RS01570 PF00072 Response regulator receiver domain D5125_RS01570 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_RS01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS01570 PF01584 CheW-like domain D5125_RS01570 PF01627 Hpt domain D5125_RS01575 PF00072 Response regulator receiver domain D5125_RS01580 PF04545 Sigma-70, region 4 D5125_RS01580 PF04539 Sigma-70 region 3 D5125_RS01580 PF04542 Sigma-70 region 2 D5125_RS01585 PF10609 NUBPL iron-transfer P-loop NTPase D5125_RS01590 PF00448 SRP54-type protein, GTPase domain D5125_RS01595 PF00771 FHIPEP family D5125_RS01600 PF01312 FlhB HrpN YscU SpaS Family D5125_RS01605 PF05987 Bacterial protein of unknown function (DUF898) D5125_RS01610 PF01435 Peptidase family M48 D5125_RS01615 PF01311 Bacterial export proteins, family 1 D5125_RS01620 PF01313 Bacterial export proteins, family 3 D5125_RS01625 PF00813 FliP family D5125_RS01630 PF04347 Flagellar biosynthesis protein, FliO D5125_RS01635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D5125_RS01640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D5125_RS01640 PF02154 Flagellar motor switch protein FliM D5125_RS01655 PF01406 tRNA synthetases class I (C) catalytic domain D5125_RS01655 PF09190 DALR domain D5125_RS01660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D5125_RS01665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D5125_RS01670 PF00149 Calcineurin-like phosphoesterase D5125_RS01675 PF05951 Bacterial protein of unknown function (DUF882) D5125_RS01680 PF01471 Putative peptidoglycan binding domain D5125_RS01680 PF03734 L,D-transpeptidase catalytic domain D5125_RS01685 PF04262 Glutamate-cysteine ligase D5125_RS01690 PF00768 D-alanyl-D-alanine carboxypeptidase D5125_RS01695 PF01594 AI-2E family transporter D5125_RS01705 PF03466 LysR substrate binding domain D5125_RS01705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_RS01710 PF11791 Aconitate B N-terminal domain D5125_RS01710 PF00330 Aconitase family (aconitate hydratase) D5125_RS01710 PF06434 Aconitate hydratase 2 N-terminus D5125_RS01725 PF00005 ABC transporter D5125_RS01735 PF12838 4Fe-4S dicluster domain D5125_RS01750 PF00034 Cytochrome c D5125_RS01760 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D5125_RS01760 PF18764 Nitrous oxide reductase propeller repeat D5125_RS01760 PF18793 Nitrous oxide reductase propeller repeat 2 D5125_RS01765 PF02630 SCO1/SenC D5125_RS01780 PF00034 Cytochrome c D5125_RS01785 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5125_RS01790 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D5125_RS01810 PF01292 Prokaryotic cytochrome b561 D5125_RS01815 PF14824 Sirohaem biosynthesis protein central D5125_RS01815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5125_RS01815 PF10414 Sirohaem synthase dimerisation region D5125_RS01820 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_RS01830 PF13404 AsnC-type helix-turn-helix domain D5125_RS01830 PF17805 AsnC-like ligand binding domain D5125_RS01835 PF17805 AsnC-like ligand binding domain D5125_RS01840 PF17805 AsnC-like ligand binding domain D5125_RS01840 PF13404 AsnC-type helix-turn-helix domain D5125_RS01845 PF04055 Radical SAM superfamily D5125_RS01845 PF13186 Iron-sulfur cluster-binding domain D5125_RS01855 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_RS01860 PF04445 Putative SAM-dependent methyltransferase D5125_RS01865 PF00595 PDZ domain D5125_RS01865 PF11818 C-terminal domain of tail specific protease (DUF3340) D5125_RS01865 PF03572 Peptidase family S41 D5125_RS01865 PF17804 Tail specific protease N-terminal domain D5125_RS01875 PF00085 Thioredoxin D5125_RS01885 PF02690 Na+/Pi-cotransporter D5125_RS01890 PF02080 TrkA-C domain D5125_RS01890 PF02254 TrkA-N domain D5125_RS01895 PF02386 Cation transport protein D5125_RS01905 PF13493 Domain of unknown function (DUF4118) D5125_RS01905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS01905 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS01905 PF02702 Osmosensitive K+ channel His kinase sensor domain D5125_RS01910 PF00072 Response regulator receiver domain D5125_RS01910 PF00486 Transcriptional regulatory protein, C terminal D5125_RS01915 PF01053 Cys/Met metabolism PLP-dependent enzyme D5125_RS01935 PF00873 AcrB/AcrD/AcrF family D5125_RS01940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_RS01950 PF08241 Methyltransferase domain D5125_RS01955 PF00581 Rhodanese-like domain D5125_RS01960 PF01053 Cys/Met metabolism PLP-dependent enzyme D5125_RS01970 PF00266 Aminotransferase class-V D5125_RS01985 PF13247 4Fe-4S dicluster domain D5125_RS01990 PF01568 Molydopterin dinucleotide binding domain D5125_RS01990 PF00384 Molybdopterin oxidoreductase D5125_RS02000 PF08534 Redoxin D5125_RS02015 PF01925 Sulfite exporter TauE/SafE D5125_RS02050 PF00204 DNA gyrase B D5125_RS02050 PF00986 DNA gyrase B subunit, carboxyl terminus D5125_RS02050 PF01751 Toprim domain D5125_RS02050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS02060 PF02609 Exonuclease VII small subunit D5125_RS02065 PF00348 Polyprenyl synthetase D5125_RS02070 PF02649 Type I GTP cyclohydrolase folE2 D5125_RS02080 PF04608 Phosphatidylglycerophosphatase A D5125_RS02085 PF02769 AIR synthase related protein, C-terminal domain D5125_RS02085 PF00586 AIR synthase related protein, N-terminal domain D5125_RS02090 PF01029 NusB family D5125_RS02095 PF00885 6,7-dimethyl-8-ribityllumazine synthase D5125_RS02100 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D5125_RS02100 PF00925 GTP cyclohydrolase II D5125_RS02105 PF00677 Lumazine binding domain D5125_RS02115 PF01872 RibD C-terminal domain D5125_RS02115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D5125_RS02125 PF03477 ATP cone domain D5125_RS02130 PF00464 Serine hydroxymethyltransferase D5125_RS02135 PF00072 Response regulator receiver domain D5125_RS02140 PF00072 Response regulator receiver domain D5125_RS02140 PF00672 HAMP domain D5125_RS02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS02140 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS02140 PF01627 Hpt domain D5125_RS02140 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS02145 PF01370 NAD dependent epimerase/dehydratase family D5125_RS02150 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D5125_RS02150 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D5125_RS02150 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D5125_RS02155 PF03796 DnaB-like helicase C terminal domain D5125_RS02155 PF00772 DnaB-like helicase N terminal domain D5125_RS02160 PF01281 Ribosomal protein L9, N-terminal domain D5125_RS02160 PF03948 Ribosomal protein L9, C-terminal domain D5125_RS02170 PF01084 Ribosomal protein S18 D5125_RS02175 PF01250 Ribosomal protein S6 D5125_RS02180 PF02321 Outer membrane efflux protein D5125_RS02185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5125_RS02185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5125_RS02185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5125_RS02185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5125_RS02190 PF01322 Cytochrome C' D5125_RS02205 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ D5125_RS02210 PF04221 RelB antitoxin D5125_RS02215 PF00589 Phage integrase family D5125_RS02225 PF13181 Tetratricopeptide repeat D5125_RS02230 PF01609 Transposase DDE domain D5125_RS02235 PF00665 Integrase core domain D5125_RS02255 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D5125_RS02260 PF01750 Hydrogenase maturation protease D5125_RS02265 PF00793 DAHP synthetase I family D5125_RS02270 PF04186 FxsA cytoplasmic membrane protein D5125_RS02275 PF03091 CutA1 divalent ion tolerance protein D5125_RS02280 PF02683 Cytochrome C biogenesis protein transmembrane region D5125_RS02280 PF11412 Disulphide bond corrector protein DsbC D5125_RS02285 PF02590 Predicted SPOUT methyltransferase D5125_RS02290 PF02545 Maf-like protein D5125_RS02295 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D5125_RS02295 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D5125_RS02300 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D5125_RS02300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D5125_RS02305 PF01464 Transglycosylase SLT domain D5125_RS02305 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5125_RS02310 PF00689 Cation transporting ATPase, C-terminus D5125_RS02310 PF00690 Cation transporter/ATPase, N-terminus D5125_RS02315 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_RS02325 PF06962 Putative rRNA methylase D5125_RS02350 PF03167 Uracil DNA glycosylase superfamily D5125_RS02355 PF08502 LeuA allosteric (dimerisation) domain D5125_RS02355 PF00682 HMGL-like D5125_RS02360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS02360 PF01590 GAF domain D5125_RS02360 PF08446 PAS fold D5125_RS02360 PF00360 Phytochrome region D5125_RS02360 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS02365 PF01722 BolA-like protein D5125_RS02370 PF00672 HAMP domain D5125_RS02370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS02385 PF04358 DsrC like protein D5125_RS02410 PF00085 Thioredoxin D5125_RS02415 PF01980 tRNA-methyltransferase O D5125_RS02415 PF18389 TrmO C-terminal domain D5125_RS02440 PF00873 AcrB/AcrD/AcrF family D5125_RS02455 PF07549 SecD/SecF GG Motif D5125_RS02455 PF02355 Protein export membrane protein D5125_RS02460 PF02355 Protein export membrane protein D5125_RS02460 PF13721 SecD export protein N-terminal TM region D5125_RS02460 PF07549 SecD/SecF GG Motif D5125_RS02465 PF02699 Preprotein translocase subunit D5125_RS02470 PF01702 Queuine tRNA-ribosyltransferase D5125_RS02475 PF02547 Queuosine biosynthesis protein D5125_RS02480 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS02490 PF16363 GDP-mannose 4,6 dehydratase D5125_RS02510 PF18113 Rubredoxin binding C-terminal domain D5125_RS02510 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS02515 PF01636 Phosphotransferase enzyme family D5125_RS02520 PF01814 Hemerythrin HHE cation binding domain D5125_RS02540 PF13307 Helicase C-terminal domain D5125_RS02540 PF04851 Type III restriction enzyme, res subunit D5125_RS02555 PF14814 Bifunctional transglycosylase second domain D5125_RS02555 PF00905 Penicillin binding protein transpeptidase domain D5125_RS02555 PF00912 Transglycosylase D5125_RS02575 PF13344 Haloacid dehalogenase-like hydrolase D5125_RS02575 PF00293 NUDIX domain D5125_RS02580 PF01933 Uncharacterised protein family UPF0052 D5125_RS02590 PF00325 Bacterial regulatory proteins, crp family D5125_RS02590 PF00027 Cyclic nucleotide-binding domain D5125_RS02595 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5125_RS02610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_RS02610 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D5125_RS02615 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D5125_RS02615 PF13746 4Fe-4S dicluster domain D5125_RS02615 PF12801 4Fe-4S binding domain D5125_RS02625 PF09820 Predicted AAA-ATPase D5125_RS02625 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS02670 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_RS02670 PF08463 EcoEI R protein C-terminal D5125_RS02670 PF00271 Helicase conserved C-terminal domain D5125_RS02670 PF04851 Type III restriction enzyme, res subunit D5125_RS02675 PF04851 Type III restriction enzyme, res subunit D5125_RS02675 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_RS02675 PF00271 Helicase conserved C-terminal domain D5125_RS02675 PF08463 EcoEI R protein C-terminal D5125_RS02690 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5125_RS02710 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_RS02730 PF01139 tRNA-splicing ligase RtcB D5125_RS02735 PF10127 RNA repair pathway DNA polymerase beta family D5125_RS02845 PF00436 Single-strand binding protein family D5125_RS02890 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) D5125_RS02945 PF01966 HD domain D5125_RS02945 PF00072 Response regulator receiver domain D5125_RS02965 PF00072 Response regulator receiver domain D5125_RS02965 PF00486 Transcriptional regulatory protein, C terminal D5125_RS02970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS02970 PF00672 HAMP domain D5125_RS02970 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS02980 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS02980 PF17151 Periplasmic sensor domain D5125_RS03000 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D5125_RS03000 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_RS03020 PF00374 Nickel-dependent hydrogenase D5125_RS03030 PF01590 GAF domain D5125_RS03030 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS03030 PF00563 EAL domain D5125_RS03030 PF00360 Phytochrome region D5125_RS03035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS03035 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS03035 PF01627 Hpt domain D5125_RS03035 PF00989 PAS fold D5125_RS03035 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5125_RS03035 PF00072 Response regulator receiver domain D5125_RS03060 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5125_RS03060 PF10518 TAT (twin-arginine translocation) pathway signal sequence D5125_RS03060 PF00384 Molybdopterin oxidoreductase D5125_RS03060 PF01568 Molydopterin dinucleotide binding domain D5125_RS03065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D5125_RS03070 PF02152 Dihydroneopterin aldolase D5125_RS03075 PF02660 Glycerol-3-phosphate acyltransferase D5125_RS03080 PF01523 Putative modulator of DNA gyrase D5125_RS03085 PF01523 Putative modulator of DNA gyrase D5125_RS03090 PF00795 Carbon-nitrogen hydrolase D5125_RS03120 PF00579 tRNA synthetases class I (W and Y) D5125_RS03125 PF04225 Opacity-associated protein A LysM-like domain D5125_RS03125 PF01551 Peptidase family M23 D5125_RS03135 PF02028 BCCT, betaine/carnitine/choline family transporter D5125_RS03150 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B D5125_RS03150 PF00175 Oxidoreductase NAD-binding domain D5125_RS03160 PF01259 SAICAR synthetase D5125_RS03180 PF00437 Type II/IV secretion system protein D5125_RS03185 PF01168 Alanine racemase, N-terminal domain D5125_RS03190 PF03807 NADP oxidoreductase coenzyme F420-dependent D5125_RS03190 PF14748 Pyrroline-5-carboxylate reductase dimerisation D5125_RS03195 PF02325 YGGT family D5125_RS03200 PF02594 Uncharacterised ACR, YggU family COG1872 D5125_RS03210 PF00471 Ribosomal protein L33 D5125_RS03215 PF00830 Ribosomal L28 family D5125_RS03220 PF04002 RadC-like JAB domain D5125_RS03225 PF02441 Flavoprotein D5125_RS03225 PF04127 DNA / pantothenate metabolism flavoprotein D5125_RS03230 PF00692 dUTPase D5125_RS03235 PF00696 Amino acid kinase family D5125_RS03245 PF00156 Phosphoribosyl transferase domain D5125_RS03255 PF01209 ubiE/COQ5 methyltransferase family D5125_RS03265 PF03109 ABC1 family D5125_RS03275 PF08497 Radical SAM N-terminal D5125_RS03275 PF04055 Radical SAM superfamily D5125_RS03275 PF11842 Domain of unknown function (DUF3362) D5125_RS03280 PF00625 Guanylate kinase D5125_RS03285 PF03205 Molybdopterin guanine dinucleotide synthesis protein B D5125_RS03290 PF03264 NapC/NirT cytochrome c family, N-terminal region D5125_RS03295 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D5125_RS03300 PF12801 4Fe-4S binding domain D5125_RS03300 PF13237 4Fe-4S dicluster domain D5125_RS03305 PF12838 4Fe-4S dicluster domain D5125_RS03305 PF12800 4Fe-4S binding domain D5125_RS03310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D5125_RS03310 PF00384 Molybdopterin oxidoreductase D5125_RS03310 PF01568 Molydopterin dinucleotide binding domain D5125_RS03320 PF12838 4Fe-4S dicluster domain D5125_RS03320 PF13187 4Fe-4S dicluster domain D5125_RS03330 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS03330 PF03707 Bacterial signalling protein N terminal repeat D5125_RS03330 PF00563 EAL domain D5125_RS03355 PF01925 Sulfite exporter TauE/SafE D5125_RS03365 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ D5125_RS03370 PF00902 Sec-independent protein translocase protein (TatC) D5125_RS03375 PF02416 mttA/Hcf106 family D5125_RS03380 PF02416 mttA/Hcf106 family D5125_RS03385 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D5125_RS03390 PF04002 RadC-like JAB domain D5125_RS03400 PF00004 ATPase family associated with various cellular activities (AAA) D5125_RS03400 PF17862 AAA+ lid domain D5125_RS03400 PF01434 Peptidase family M41 D5125_RS03420 PF07669 Eco57I restriction-modification methylase D5125_RS03455 PF00977 Histidine biosynthesis protein D5125_RS03460 PF00977 Histidine biosynthesis protein D5125_RS03465 PF00117 Glutamine amidotransferase class-I D5125_RS03470 PF00475 Imidazoleglycerol-phosphate dehydratase D5125_RS03475 PF02580 D-Tyr-tRNA(Tyr) deacylase D5125_RS03480 PF00009 Elongation factor Tu GTP binding domain D5125_RS03480 PF00679 Elongation factor G C-terminus D5125_RS03480 PF03144 Elongation factor Tu domain 2 D5125_RS03485 PF01145 SPFH domain / Band 7 family D5125_RS03485 PF16200 C-terminal region of band_7 D5125_RS03505 PF01649 Ribosomal protein S20 D5125_RS03510 PF02424 ApbE family D5125_RS03515 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D5125_RS03515 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D5125_RS03520 PF07715 TonB-dependent Receptor Plug Domain D5125_RS03520 PF00593 TonB dependent receptor D5125_RS03530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS03530 PF00072 Response regulator receiver domain D5125_RS03530 PF01627 Hpt domain D5125_RS03530 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS03535 PF02508 Rnf-Nqr subunit, membrane protein D5125_RS03540 PF04205 FMN-binding domain D5125_RS03545 PF03116 NQR2, RnfD, RnfE family D5125_RS03550 PF10531 SLBB domain D5125_RS03550 PF12838 4Fe-4S dicluster domain D5125_RS03550 PF13375 RnfC Barrel sandwich hybrid domain D5125_RS03550 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5125_RS03555 PF04060 Putative Fe-S cluster D5125_RS03560 PF02508 Rnf-Nqr subunit, membrane protein D5125_RS03575 PF00919 Uncharacterized protein family UPF0004 D5125_RS03575 PF04055 Radical SAM superfamily D5125_RS03575 PF18693 TRAM domain D5125_RS03600 PF00571 CBS domain D5125_RS03600 PF00005 ABC transporter D5125_RS03605 PF00528 Binding-protein-dependent transport system inner membrane component D5125_RS03610 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D5125_RS03640 PF00501 AMP-binding enzyme D5125_RS03640 PF13193 AMP-binding enzyme C-terminal domain D5125_RS03665 PF00483 Nucleotidyl transferase D5125_RS03670 PF16363 GDP-mannose 4,6 dehydratase D5125_RS03680 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D5125_RS03690 PF16363 GDP-mannose 4,6 dehydratase D5125_RS03715 PF04055 Radical SAM superfamily D5125_RS03715 PF13186 Iron-sulfur cluster-binding domain D5125_RS03720 PF06463 Molybdenum Cofactor Synthesis C D5125_RS03720 PF04055 Radical SAM superfamily D5125_RS03725 PF06463 Molybdenum Cofactor Synthesis C D5125_RS03725 PF04055 Radical SAM superfamily D5125_RS03730 PF04055 Radical SAM superfamily D5125_RS03730 PF02310 B12 binding domain D5125_RS03740 PF05050 Methyltransferase FkbM domain D5125_RS03790 PF03275 UDP-galactopyranose mutase D5125_RS03800 PF16363 GDP-mannose 4,6 dehydratase D5125_RS03805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D5125_RS03805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D5125_RS03805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D5125_RS03840 PF08241 Methyltransferase domain D5125_RS03845 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_RS03850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5125_RS03850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5125_RS03855 PF00535 Glycosyl transferase family 2 D5125_RS03865 PF01609 Transposase DDE domain D5125_RS03900 PF02348 Cytidylyltransferase D5125_RS03905 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_RS03915 PF03102 NeuB family D5125_RS03915 PF08666 SAF domain D5125_RS03920 PF00202 Aminotransferase class-III D5125_RS03975 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_RS03980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D5125_RS03980 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D5125_RS04050 PF13749 Putative ATP-dependent DNA helicase recG C-terminal D5125_RS04050 PF17191 RecG wedge domain D5125_RS04050 PF00270 DEAD/DEAH box helicase D5125_RS04055 PF05685 Putative restriction endonuclease D5125_RS04060 PF10996 Beta-Casp domain D5125_RS04060 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D5125_RS04060 PF00753 Metallo-beta-lactamase superfamily D5125_RS04065 PF16363 GDP-mannose 4,6 dehydratase D5125_RS04070 PF01370 NAD dependent epimerase/dehydratase family D5125_RS04075 PF01050 Mannose-6-phosphate isomerase D5125_RS04075 PF00483 Nucleotidyl transferase D5125_RS04090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5125_RS04090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5125_RS04090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5125_RS04090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5125_RS04095 PF03102 NeuB family D5125_RS04095 PF08666 SAF domain D5125_RS04105 PF02954 Bacterial regulatory protein, Fis family D5125_RS04105 PF00072 Response regulator receiver domain D5125_RS04105 PF00158 Sigma-54 interaction domain D5125_RS04110 PF01545 Cation efflux family D5125_RS04110 PF16916 Dimerisation domain of Zinc Transporter D5125_RS04115 PF00072 Response regulator receiver domain D5125_RS04115 PF00486 Transcriptional regulatory protein, C terminal D5125_RS04130 PF09820 Predicted AAA-ATPase D5125_RS04130 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS04135 PF01794 Ferric reductase like transmembrane component D5125_RS04150 PF01475 Ferric uptake regulator family D5125_RS04155 PF00829 Ribosomal prokaryotic L21 protein D5125_RS04160 PF01016 Ribosomal L27 protein D5125_RS04165 PF01018 GTP1/OBG D5125_RS04165 PF01926 50S ribosome-binding GTPase D5125_RS04170 PF00696 Amino acid kinase family D5125_RS04170 PF01472 PUA domain D5125_RS04175 PF00989 PAS fold D5125_RS04175 PF00072 Response regulator receiver domain D5125_RS04175 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS04175 PF01627 Hpt domain D5125_RS04175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS04175 PF18415 Histidine kinase receptor ArcB trans-membrane domain D5125_RS04180 PF00563 EAL domain D5125_RS04180 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS04180 PF03707 Bacterial signalling protein N terminal repeat D5125_RS04190 PF02219 Methylenetetrahydrofolate reductase D5125_RS04195 PF05221 S-adenosyl-L-homocysteine hydrolase D5125_RS04195 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D5125_RS04200 PF02772 S-adenosylmethionine synthetase, central domain D5125_RS04200 PF00438 S-adenosylmethionine synthetase, N-terminal domain D5125_RS04200 PF02773 S-adenosylmethionine synthetase, C-terminal domain D5125_RS04215 PF00202 Aminotransferase class-III D5125_RS04220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D5125_RS04220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D5125_RS04230 PF00291 Pyridoxal-phosphate dependent enzyme D5125_RS04235 PF00491 Arginase family D5125_RS04240 PF00360 Phytochrome region D5125_RS04240 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS04240 PF01590 GAF domain D5125_RS04240 PF00563 EAL domain D5125_RS04250 PF10576 Iron-sulfur binding domain of endonuclease III D5125_RS04250 PF00730 HhH-GPD superfamily base excision DNA repair protein D5125_RS04250 PF00633 Helix-hairpin-helix motif D5125_RS04255 PF08264 Anticodon-binding domain of tRNA D5125_RS04255 PF10458 Valyl tRNA synthetase tRNA binding arm D5125_RS04255 PF00133 tRNA synthetases class I (I, L, M and V) D5125_RS04260 PF03544 Gram-negative bacterial TonB protein C-terminal D5125_RS04265 PF02472 Biopolymer transport protein ExbD/TolR D5125_RS04270 PF01618 MotA/TolQ/ExbB proton channel family D5125_RS04275 PF01618 MotA/TolQ/ExbB proton channel family D5125_RS04280 PF01026 TatD related DNase D5125_RS04300 PF11741 AMIN domain D5125_RS04300 PF00263 Bacterial type II and III secretion system protein D5125_RS04300 PF07660 Secretin and TonB N terminus short domain D5125_RS04300 PF03958 Bacterial type II/III secretion system short domain D5125_RS04305 PF04351 Pilus assembly protein, PilP D5125_RS04310 PF04350 Pilus assembly protein, PilO D5125_RS04315 PF05137 Fimbrial assembly protein (PilN) D5125_RS04320 PF11104 Type IV pilus assembly protein PilM; D5125_RS04325 PF00905 Penicillin binding protein transpeptidase domain D5125_RS04325 PF17092 Penicillin-binding protein OB-like domain D5125_RS04325 PF00912 Transglycosylase D5125_RS04330 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS04330 PF09820 Predicted AAA-ATPase D5125_RS04335 PF00999 Sodium/hydrogen exchanger family D5125_RS04335 PF02254 TrkA-N domain D5125_RS04340 PF00571 CBS domain D5125_RS04340 PF01595 Cyclin M transmembrane N-terminal domain D5125_RS04360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS04360 PF00672 HAMP domain D5125_RS04360 PF02743 Cache domain D5125_RS04365 PF13614 AAA domain D5125_RS04370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS04370 PF12729 Four helix bundle sensory module for signal transduction D5125_RS04370 PF00672 HAMP domain D5125_RS04375 PF00072 Response regulator receiver domain D5125_RS04385 PF01584 CheW-like domain D5125_RS04385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS04385 PF01627 Hpt domain D5125_RS04385 PF07194 P2 response regulator binding domain D5125_RS04385 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_RS04390 PF02743 Cache domain D5125_RS04390 PF00672 HAMP domain D5125_RS04390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS04395 PF01584 CheW-like domain D5125_RS04400 PF00672 HAMP domain D5125_RS04400 PF16591 Helical bimodular sensor domain D5125_RS04400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS04405 PF01584 CheW-like domain D5125_RS04410 PF03705 CheR methyltransferase, all-alpha domain D5125_RS04410 PF01739 CheR methyltransferase, SAM binding domain D5125_RS04415 PF03975 CheD chemotactic sensory transduction D5125_RS04420 PF01339 CheB methylesterase D5125_RS04420 PF00072 Response regulator receiver domain D5125_RS04425 PF02142 MGS-like domain D5125_RS04425 PF01808 AICARFT/IMPCHase bienzyme D5125_RS04430 PF02843 Phosphoribosylglycinamide synthetase, C domain D5125_RS04430 PF02844 Phosphoribosylglycinamide synthetase, N domain D5125_RS04430 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D5125_RS04435 PF17283 SprT-like zinc ribbon domain D5125_RS04435 PF10263 SprT-like family D5125_RS04445 PF13609 Gram-negative porin D5125_RS04450 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D5125_RS04455 PF00881 Nitroreductase family D5125_RS04465 PF07295 Zinc-ribbon containing domain D5125_RS04470 PF00437 Type II/IV secretion system protein D5125_RS04475 PF00343 Carbohydrate phosphorylase D5125_RS04480 PF00171 Aldehyde dehydrogenase family D5125_RS04485 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D5125_RS04495 PF01467 Cytidylyltransferase-like D5125_RS04505 PF01812 5-formyltetrahydrofolate cyclo-ligase family D5125_RS04515 PF05164 Cell division protein ZapA D5125_RS04525 PF03695 Uncharacterised protein family (UPF0149) D5125_RS04530 PF05195 Aminopeptidase P, N-terminal domain D5125_RS04530 PF00557 Metallopeptidase family M24 D5125_RS04535 PF01494 FAD binding domain D5125_RS04540 PF01494 FAD binding domain D5125_RS04545 PF17863 AAA lid domain D5125_RS04545 PF07726 ATPase family associated with various cellular activities (AAA) D5125_RS04555 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS04555 PF09820 Predicted AAA-ATPase D5125_RS04590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS04590 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS04590 PF00072 Response regulator receiver domain D5125_RS04590 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5125_RS04595 PF00072 Response regulator receiver domain D5125_RS04595 PF00486 Transcriptional regulatory protein, C terminal D5125_RS04615 PF09820 Predicted AAA-ATPase D5125_RS04615 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS04620 PF13181 Tetratricopeptide repeat D5125_RS04645 PF00486 Transcriptional regulatory protein, C terminal D5125_RS04645 PF00072 Response regulator receiver domain D5125_RS04650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS04650 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS04660 PF09820 Predicted AAA-ATPase D5125_RS04660 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS04665 PF00111 2Fe-2S iron-sulfur cluster binding domain D5125_RS04665 PF00175 Oxidoreductase NAD-binding domain D5125_RS04665 PF00970 Oxidoreductase FAD-binding domain D5125_RS04675 PF00034 Cytochrome c D5125_RS04680 PF00085 Thioredoxin D5125_RS04680 PF01323 DSBA-like thioredoxin domain D5125_RS04690 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS04695 PF00580 UvrD/REP helicase N-terminal domain D5125_RS04695 PF13361 UvrD-like helicase C-terminal domain D5125_RS04710 PF00313 'Cold-shock' DNA-binding domain D5125_RS04720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5125_RS04755 PF03968 OstA-like protein D5125_RS04760 PF00005 ABC transporter D5125_RS04760 PF12399 Branched-chain amino acid ATP-binding cassette transporter D5125_RS04765 PF04552 Sigma-54, DNA binding domain D5125_RS04765 PF04963 Sigma-54 factor, core binding domain D5125_RS04765 PF00309 Sigma-54 factor, Activator interacting domain (AID) D5125_RS04770 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D5125_RS04775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D5125_RS04785 PF03668 P-loop ATPase protein family D5125_RS04790 PF03610 PTS system fructose IIA component D5125_RS04795 PF00381 PTS HPr component phosphorylation site D5125_RS04820 PF00005 ABC transporter D5125_RS04835 PF02391 MoaE protein D5125_RS04840 PF03144 Elongation factor Tu domain 2 D5125_RS04840 PF00679 Elongation factor G C-terminus D5125_RS04840 PF14492 Elongation Factor G, domain II D5125_RS04840 PF03764 Elongation factor G, domain IV D5125_RS04840 PF00009 Elongation factor Tu GTP binding domain D5125_RS04850 PF01627 Hpt domain D5125_RS04850 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_RS04850 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS04850 PF00072 Response regulator receiver domain D5125_RS04850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS04850 PF00672 HAMP domain D5125_RS04855 PF00072 Response regulator receiver domain D5125_RS04860 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS04860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS04860 PF01627 Hpt domain D5125_RS04860 PF00072 Response regulator receiver domain D5125_RS04860 PF00672 HAMP domain D5125_RS04860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS04875 PF05685 Putative restriction endonuclease D5125_RS04880 PF05685 Putative restriction endonuclease D5125_RS04885 PF03372 Endonuclease/Exonuclease/phosphatase family D5125_RS04890 PF00709 Adenylosuccinate synthetase D5125_RS04895 PF13393 Histidyl-tRNA synthetase D5125_RS04905 PF01145 SPFH domain / Band 7 family D5125_RS04910 PF01145 SPFH domain / Band 7 family D5125_RS04910 PF12221 Bacterial membrane protein N terminal D5125_RS04915 PF01926 50S ribosome-binding GTPase D5125_RS04915 PF16360 GTP-binding GTPase Middle Region D5125_RS04915 PF13167 GTP-binding GTPase N-terminal D5125_RS04920 PF17209 Hfq protein D5125_RS04930 PF01510 N-acetylmuramoyl-L-alanine amidase D5125_RS04945 PF07556 Protein of unknown function (DUF1538) D5125_RS04950 PF07556 Protein of unknown function (DUF1538) D5125_RS04960 PF03641 Possible lysine decarboxylase D5125_RS04965 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D5125_RS04965 PF01676 Metalloenzyme superfamily D5125_RS04995 PF07722 Peptidase C26 D5125_RS05010 PF01594 AI-2E family transporter D5125_RS05015 PF01066 CDP-alcohol phosphatidyltransferase D5125_RS05025 PF02769 AIR synthase related protein, C-terminal domain D5125_RS05025 PF00586 AIR synthase related protein, N-terminal domain D5125_RS05030 PF00551 Formyl transferase D5125_RS05035 PF09308 LuxQ, periplasmic D5125_RS05035 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS05035 PF00072 Response regulator receiver domain D5125_RS05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS05045 PF00692 dUTPase D5125_RS05055 PF00563 EAL domain D5125_RS05055 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS05055 PF03707 Bacterial signalling protein N terminal repeat D5125_RS05060 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS05060 PF00072 Response regulator receiver domain D5125_RS05065 PF00672 HAMP domain D5125_RS05065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS05095 PF13439 Glycosyltransferase Family 4 D5125_RS05095 PF00534 Glycosyl transferases group 1 D5125_RS05115 PF00535 Glycosyl transferase family 2 D5125_RS05125 PF00005 ABC transporter D5125_RS05125 PF00664 ABC transporter transmembrane region D5125_RS05145 PF01926 50S ribosome-binding GTPase D5125_RS05145 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D5125_RS05150 PF13360 PQQ-like domain D5125_RS05155 PF09976 Tetratricopeptide repeat-like domain D5125_RS05160 PF03129 Anticodon binding domain D5125_RS05160 PF13393 Histidyl-tRNA synthetase D5125_RS05175 PF04055 Radical SAM superfamily D5125_RS05180 PF04607 Region found in RelA / SpoT proteins D5125_RS05180 PF02824 TGS domain D5125_RS05180 PF13291 ACT domain D5125_RS05190 PF04384 Iron-sulphur cluster assembly D5125_RS05195 PF00111 2Fe-2S iron-sulfur cluster binding domain D5125_RS05200 PF00012 Hsp70 protein D5125_RS05205 PF00226 DnaJ domain D5125_RS05205 PF07743 HSCB C-terminal oligomerisation domain D5125_RS05210 PF01521 Iron-sulphur cluster biosynthesis D5125_RS05215 PF01592 NifU-like N terminal domain D5125_RS05220 PF00266 Aminotransferase class-V D5125_RS05225 PF02082 Transcriptional regulator D5125_RS05230 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_RS05235 PF00588 SpoU rRNA Methylase family D5125_RS05240 PF00459 Inositol monophosphatase family D5125_RS05255 PF02445 Quinolinate synthetase A protein D5125_RS05260 PF00849 RNA pseudouridylate synthase D5125_RS05265 PF03350 Uncharacterized protein family, UPF0114 D5125_RS05280 PF00563 EAL domain D5125_RS05280 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS05280 PF03707 Bacterial signalling protein N terminal repeat D5125_RS05285 PF08447 PAS fold D5125_RS05285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS05290 PF03734 L,D-transpeptidase catalytic domain D5125_RS05290 PF01471 Putative peptidoglycan binding domain D5125_RS05325 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D5125_RS05330 PF00639 PPIC-type PPIASE domain D5125_RS05330 PF09312 SurA N-terminal domain D5125_RS05335 PF03968 OstA-like protein D5125_RS05335 PF04453 LPS transport system D D5125_RS05340 PF00072 Response regulator receiver domain D5125_RS05345 PF00072 Response regulator receiver domain D5125_RS05355 PF03960 ArsC family D5125_RS05360 PF03358 NADPH-dependent FMN reductase D5125_RS05370 PF00308 Bacterial dnaA protein D5125_RS05375 PF01381 Helix-turn-helix D5125_RS05380 PF05973 Phage derived protein Gp49-like (DUF891) D5125_RS05395 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) D5125_RS05415 PF13181 Tetratricopeptide repeat D5125_RS05430 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) D5125_RS05450 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_RS05505 PF13181 Tetratricopeptide repeat D5125_RS05530 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D5125_RS05530 PF00413 Matrixin D5125_RS05530 PF08548 Peptidase M10 serralysin C terminal D5125_RS05540 PF00005 ABC transporter D5125_RS05540 PF14524 Wzt C-terminal domain D5125_RS05610 PF00535 Glycosyl transferase family 2 D5125_RS05625 PF00535 Glycosyl transferase family 2 D5125_RS05630 PF00664 ABC transporter transmembrane region D5125_RS05630 PF00005 ABC transporter D5125_RS05635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_RS05635 PF00529 HlyD membrane-fusion protein of T1SS D5125_RS05650 PF01202 Shikimate kinase D5125_RS05655 PF10518 TAT (twin-arginine translocation) pathway signal sequence D5125_RS05655 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding D5125_RS05655 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS05665 PF03264 NapC/NirT cytochrome c family, N-terminal region D5125_RS05670 PF05099 Tellurite resistance protein TerB D5125_RS05670 PF00226 DnaJ domain D5125_RS05675 PF07715 TonB-dependent Receptor Plug Domain D5125_RS05675 PF00593 TonB dependent receptor D5125_RS05680 PF01497 Periplasmic binding protein D5125_RS05690 PF00834 Ribulose-phosphate 3 epimerase family D5125_RS05700 PF13419 Haloacid dehalogenase-like hydrolase D5125_RS05705 PF00069 Protein kinase domain D5125_RS05705 PF03793 PASTA domain D5125_RS05715 PF01171 PP-loop family D5125_RS05725 PF01926 50S ribosome-binding GTPase D5125_RS05730 PF02630 SCO1/SenC D5125_RS05750 PF02602 Uroporphyrinogen-III synthase HemD D5125_RS05755 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D5125_RS05755 PF03900 Porphobilinogen deaminase, C-terminal domain D5125_RS05760 PF04397 LytTr DNA-binding domain D5125_RS05760 PF00072 Response regulator receiver domain D5125_RS05765 PF06580 Histidine kinase D5125_RS05765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS05770 PF14698 Argininosuccinate lyase C-terminal D5125_RS05770 PF00206 Lyase D5125_RS05780 PF12633 Adenylate cyclase NT domain D5125_RS05780 PF01295 Adenylate cyclase, class-I D5125_RS05785 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D5125_RS05785 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D5125_RS05795 PF01678 Diaminopimelate epimerase D5125_RS05800 PF04340 Protein of unknown function, DUF484 D5125_RS05805 PF00589 Phage integrase family D5125_RS05805 PF02899 Phage integrase, N-terminal SAM-like domain D5125_RS05810 PF00149 Calcineurin-like phosphoesterase D5125_RS05815 PF04379 ApaG domain D5125_RS05825 PF00072 Response regulator receiver domain D5125_RS05830 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS05830 PF00072 Response regulator receiver domain D5125_RS05835 PF13466 STAS domain D5125_RS05845 PF02954 Bacterial regulatory protein, Fis family D5125_RS05845 PF00158 Sigma-54 interaction domain D5125_RS05845 PF01590 GAF domain D5125_RS05855 PF07715 TonB-dependent Receptor Plug Domain D5125_RS05855 PF00593 TonB dependent receptor D5125_RS05865 PF07715 TonB-dependent Receptor Plug Domain D5125_RS05865 PF00593 TonB dependent receptor D5125_RS05870 PF00535 Glycosyl transferase family 2 D5125_RS05880 PF06574 FAD synthetase D5125_RS05880 PF01687 Riboflavin kinase D5125_RS05885 PF00128 Alpha amylase, catalytic domain D5125_RS05885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D5125_RS05885 PF02806 Alpha amylase, C-terminal all-beta domain D5125_RS05895 PF00989 PAS fold D5125_RS05895 PF00072 Response regulator receiver domain D5125_RS05895 PF01627 Hpt domain D5125_RS05895 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS05895 PF00497 Bacterial extracellular solute-binding proteins, family 3 D5125_RS05900 PF00072 Response regulator receiver domain D5125_RS05900 PF00486 Transcriptional regulatory protein, C terminal D5125_RS05905 PF00348 Polyprenyl synthetase D5125_RS05915 PF01402 Ribbon-helix-helix protein, copG family D5125_RS05920 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5125_RS05925 PF01351 Ribonuclease HII D5125_RS05930 PF02684 Lipid-A-disaccharide synthetase D5125_RS05955 PF01609 Transposase DDE domain D5125_RS05965 PF01555 DNA methylase D5125_RS05980 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_RS05980 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D5125_RS05985 PF07977 FabA-like domain D5125_RS05990 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D5125_RS05990 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_RS06000 PF07244 Surface antigen variable number repeat D5125_RS06000 PF01103 Surface antigen D5125_RS06005 PF17820 PDZ domain D5125_RS06005 PF02163 Peptidase family M50 D5125_RS06015 PF13288 DXP reductoisomerase C-terminal domain D5125_RS06015 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D5125_RS06015 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D5125_RS06025 PF01255 Putative undecaprenyl diphosphate synthase D5125_RS06030 PF01765 Ribosome recycling factor D5125_RS06035 PF00696 Amino acid kinase family D5125_RS06040 PF00889 Elongation factor TS D5125_RS06045 PF00318 Ribosomal protein S2 D5125_RS06050 PF00557 Metallopeptidase family M24 D5125_RS06055 PF01966 HD domain D5125_RS06055 PF08335 GlnD PII-uridylyltransferase D5125_RS06055 PF01842 ACT domain D5125_RS06055 PF01909 Nucleotidyltransferase domain D5125_RS06065 PF05191 Adenylate kinase, active site lid D5125_RS06070 PF01066 CDP-alcohol phosphatidyltransferase D5125_RS06075 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D5125_RS06075 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D5125_RS06080 PF10369 Small subunit of acetolactate synthase D5125_RS06085 PF00205 Thiamine pyrophosphate enzyme, central domain D5125_RS06085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5125_RS06085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D5125_RS06090 PF01926 50S ribosome-binding GTPase D5125_RS06090 PF06071 Protein of unknown function (DUF933) D5125_RS06095 PF13466 STAS domain D5125_RS06105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS06105 PF00672 HAMP domain D5125_RS06105 PF17200 Single Cache domain 2 D5125_RS06110 PF00072 Response regulator receiver domain D5125_RS06110 PF01339 CheB methylesterase D5125_RS06115 PF03975 CheD chemotactic sensory transduction D5125_RS06120 PF01739 CheR methyltransferase, SAM binding domain D5125_RS06120 PF03705 CheR methyltransferase, all-alpha domain D5125_RS06135 PF13614 AAA domain D5125_RS06140 PF01584 CheW-like domain D5125_RS06145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS06145 PF02203 Tar ligand binding domain homologue D5125_RS06145 PF00672 HAMP domain D5125_RS06150 PF01584 CheW-like domain D5125_RS06155 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_RS06155 PF01627 Hpt domain D5125_RS06155 PF09078 CheY binding D5125_RS06155 PF01584 CheW-like domain D5125_RS06155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS06160 PF00072 Response regulator receiver domain D5125_RS06165 PF00270 DEAD/DEAH box helicase D5125_RS06165 PF00271 Helicase conserved C-terminal domain D5125_RS06170 PF00929 Exonuclease D5125_RS06170 PF08411 Exonuclease C-terminal D5125_RS06185 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) D5125_RS06190 PF01867 CRISPR associated protein Cas1 D5125_RS06210 PF08798 CRISPR associated protein D5125_RS06220 PF09704 CRISPR-associated protein (Cas_Cas5) D5125_RS06225 PF09344 CT1975-like protein D5125_RS06240 PF00271 Helicase conserved C-terminal domain D5125_RS06240 PF00270 DEAD/DEAH box helicase D5125_RS06240 PF18019 HD domain D5125_RS06245 PF03937 Flavinator of succinate dehydrogenase D5125_RS06250 PF13085 2Fe-2S iron-sulfur cluster binding domain D5125_RS06255 PF00890 FAD binding domain D5125_RS06255 PF02910 Fumarate reductase flavoprotein C-term D5125_RS06270 PF00390 Malic enzyme, N-terminal domain D5125_RS06270 PF03949 Malic enzyme, NAD binding domain D5125_RS06270 PF01515 Phosphate acetyl/butaryl transferase D5125_RS06280 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5125_RS06285 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D5125_RS06290 PF03480 Bacterial extracellular solute-binding protein, family 7 D5125_RS06295 PF00570 HRDC domain D5125_RS06295 PF01612 3'-5' exonuclease D5125_RS06305 PF02875 Mur ligase family, glutamate ligase domain D5125_RS06305 PF01225 Mur ligase family, catalytic domain D5125_RS06305 PF08245 Mur ligase middle domain D5125_RS06310 PF02441 Flavoprotein D5125_RS06315 PF09335 SNARE associated Golgi protein D5125_RS06320 PF00072 Response regulator receiver domain D5125_RS06325 PF00202 Aminotransferase class-III D5125_RS06330 PF02581 Thiamine monophosphate synthase D5125_RS06335 PF08543 Phosphomethylpyrimidine kinase D5125_RS06355 PF09345 Domain of unknown function (DUF1987) D5125_RS06360 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS06365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS06365 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS06365 PF01627 Hpt domain D5125_RS06365 PF00072 Response regulator receiver domain D5125_RS06375 PF02401 LytB protein D5125_RS06385 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS06385 PF00563 EAL domain D5125_RS06385 PF08448 PAS fold D5125_RS06390 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS06390 PF00563 EAL domain D5125_RS06390 PF03707 Bacterial signalling protein N terminal repeat D5125_RS06395 PF04073 Aminoacyl-tRNA editing domain D5125_RS06395 PF03129 Anticodon binding domain D5125_RS06395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5125_RS06400 PF07977 FabA-like domain D5125_RS06410 PF02954 Bacterial regulatory protein, Fis family D5125_RS06415 PF01207 Dihydrouridine synthase (Dus) D5125_RS06430 PF00289 Biotin carboxylase, N-terminal domain D5125_RS06430 PF02785 Biotin carboxylase C-terminal domain D5125_RS06430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5125_RS06435 PF00364 Biotin-requiring enzyme D5125_RS06440 PF01220 Dehydroquinase class II D5125_RS06455 PF01636 Phosphotransferase enzyme family D5125_RS06465 PF00365 Phosphofructokinase D5125_RS06470 PF03030 Inorganic H+ pyrophosphatase D5125_RS06480 PF13335 Magnesium chelatase, subunit ChlI C-terminal D5125_RS06480 PF01078 Magnesium chelatase, subunit ChlI D5125_RS06485 PF04380 Membrane fusogenic activity D5125_RS06490 PF00543 Nitrogen regulatory protein P-II D5125_RS06495 PF00909 Ammonium Transporter Family D5125_RS06505 PF09086 Domain of unknown function (DUF1924) D5125_RS06515 PF02607 B12 binding domain D5125_RS06515 PF02574 Homocysteine S-methyltransferase D5125_RS06515 PF00809 Pterin binding enzyme D5125_RS06515 PF02965 Vitamin B12 dependent methionine synthase, activation domain D5125_RS06515 PF02310 B12 binding domain D5125_RS06530 PF00005 ABC transporter D5125_RS06530 PF00027 Cyclic nucleotide-binding domain D5125_RS06545 PF01841 Transglutaminase-like superfamily D5125_RS06545 PF11992 Domain of unknown function (DUF3488) D5125_RS06545 PF13559 Domain of unknown function (DUF4129) D5125_RS06560 PF18509 Magnetochrome domain D5125_RS06565 PF01925 Sulfite exporter TauE/SafE D5125_RS06590 PF08402 TOBE domain D5125_RS06590 PF00005 ABC transporter D5125_RS06600 PF01761 3-dehydroquinate synthase D5125_RS06610 PF01645 Conserved region in glutamate synthase D5125_RS06610 PF00310 Glutamine amidotransferases class-II D5125_RS06610 PF04898 Glutamate synthase central domain D5125_RS06610 PF01493 GXGXG motif D5125_RS06615 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5125_RS06615 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS06635 PF02661 Fic/DOC family D5125_RS06635 PF13784 Fic/DOC family N-terminal D5125_RS06645 PF02384 N-6 DNA Methylase D5125_RS06645 PF12161 HsdM N-terminal domain D5125_RS06670 PF03707 Bacterial signalling protein N terminal repeat D5125_RS06670 PF00563 EAL domain D5125_RS06670 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS06675 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS06675 PF08446 PAS fold D5125_RS06675 PF00360 Phytochrome region D5125_RS06675 PF01590 GAF domain D5125_RS06715 PF03969 AFG1-like ATPase D5125_RS06720 PF04551 GcpE protein D5125_RS06730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D5125_RS06735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5125_RS06735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D5125_RS06740 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D5125_RS06745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_RS06750 PF00374 Nickel-dependent hydrogenase D5125_RS06760 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS06765 PF01208 Uroporphyrinogen decarboxylase (URO-D) D5125_RS06770 PF03881 Fructosamine kinase D5125_RS06795 PF00255 Glutathione peroxidase D5125_RS06810 PF13411 MerR HTH family regulatory protein D5125_RS06815 PF00875 DNA photolyase D5125_RS06815 PF03441 FAD binding domain of DNA photolyase D5125_RS06820 PF16868 NMT1-like family D5125_RS06825 PF00708 Acylphosphatase D5125_RS06825 PF17788 HypF Kae1-like domain D5125_RS06825 PF01300 Telomere recombination D5125_RS06825 PF07503 HypF finger D5125_RS06840 PF01040 UbiA prenyltransferase family D5125_RS06845 PF04345 Chorismate lyase D5125_RS06850 PF17191 RecG wedge domain D5125_RS06850 PF00270 DEAD/DEAH box helicase D5125_RS06850 PF00271 Helicase conserved C-terminal domain D5125_RS06855 PF01894 Uncharacterised protein family UPF0047 D5125_RS06860 PF01042 Endoribonuclease L-PSP D5125_RS06865 PF04607 Region found in RelA / SpoT proteins D5125_RS06865 PF02824 TGS domain D5125_RS06865 PF13291 ACT domain D5125_RS06870 PF01192 RNA polymerase Rpb6 D5125_RS06875 PF03279 Bacterial lipid A biosynthesis acyltransferase D5125_RS06880 PF03710 Glutamate-ammonia ligase adenylyltransferase D5125_RS06880 PF08335 GlnD PII-uridylyltransferase D5125_RS06885 PF01063 Amino-transferase class IV D5125_RS06900 PF00534 Glycosyl transferases group 1 D5125_RS06905 PF02540 NAD synthase D5125_RS06905 PF00795 Carbon-nitrogen hydrolase D5125_RS06915 PF00549 CoA-ligase D5125_RS06915 PF02629 CoA binding domain D5125_RS06920 PF00549 CoA-ligase D5125_RS06920 PF08442 ATP-grasp domain D5125_RS06930 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS06930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS06935 PF00072 Response regulator receiver domain D5125_RS06935 PF00158 Sigma-54 interaction domain D5125_RS06935 PF02954 Bacterial regulatory protein, Fis family D5125_RS06955 PF00586 AIR synthase related protein, N-terminal domain D5125_RS06955 PF02769 AIR synthase related protein, C-terminal domain D5125_RS06960 PF01924 Hydrogenase formation hypA family D5125_RS06965 PF01455 HupF/HypC family D5125_RS06970 PF01381 Helix-turn-helix D5125_RS06975 PF02492 CobW/HypB/UreG, nucleotide-binding domain D5125_RS06980 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE D5125_RS06980 PF00301 Rubredoxin D5125_RS06990 PF01750 Hydrogenase maturation protease D5125_RS06995 PF00374 Nickel-dependent hydrogenase D5125_RS07000 PF03916 Polysulphide reductase, NrfD D5125_RS07005 PF13247 4Fe-4S dicluster domain D5125_RS07010 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D5125_RS07010 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D5125_RS07015 PF02954 Bacterial regulatory protein, Fis family D5125_RS07015 PF00072 Response regulator receiver domain D5125_RS07015 PF00158 Sigma-54 interaction domain D5125_RS07020 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D5125_RS07035 PF01925 Sulfite exporter TauE/SafE D5125_RS07045 PF00293 NUDIX domain D5125_RS07050 PF01960 ArgJ family D5125_RS07055 PF01043 SecA preprotein cross-linking domain D5125_RS07055 PF02810 SEC-C motif D5125_RS07055 PF07516 SecA Wing and Scaffold domain D5125_RS07055 PF07517 SecA DEAD-like domain D5125_RS07065 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D5125_RS07070 PF12327 FtsZ family, C-terminal domain D5125_RS07070 PF00091 Tubulin/FtsZ family, GTPase domain D5125_RS07075 PF02491 SHS2 domain inserted in FTSA D5125_RS07080 PF03799 Cell division protein FtsQ D5125_RS07080 PF08478 POTRA domain, FtsQ-type D5125_RS07085 PF07478 D-ala D-ala ligase C-terminus D5125_RS07085 PF01820 D-ala D-ala ligase N-terminus D5125_RS07090 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D5125_RS07090 PF01565 FAD binding domain D5125_RS07095 PF01225 Mur ligase family, catalytic domain D5125_RS07095 PF02875 Mur ligase family, glutamate ligase domain D5125_RS07095 PF08245 Mur ligase middle domain D5125_RS07100 PF03033 Glycosyltransferase family 28 N-terminal domain D5125_RS07100 PF04101 Glycosyltransferase family 28 C-terminal domain D5125_RS07105 PF01098 Cell cycle protein D5125_RS07110 PF08245 Mur ligase middle domain D5125_RS07110 PF02875 Mur ligase family, glutamate ligase domain D5125_RS07115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D5125_RS07115 PF00953 Glycosyl transferase family 4 D5125_RS07120 PF01225 Mur ligase family, catalytic domain D5125_RS07120 PF08245 Mur ligase middle domain D5125_RS07120 PF02875 Mur ligase family, glutamate ligase domain D5125_RS07125 PF01225 Mur ligase family, catalytic domain D5125_RS07125 PF02875 Mur ligase family, glutamate ligase domain D5125_RS07125 PF08245 Mur ligase middle domain D5125_RS07130 PF03717 Penicillin-binding Protein dimerisation domain D5125_RS07130 PF00905 Penicillin binding protein transpeptidase domain D5125_RS07135 PF04999 Cell division protein FtsL D5125_RS07140 PF01795 MraW methylase family D5125_RS07145 PF02381 MraZ protein, putative antitoxin-like D5125_RS07165 PF00578 AhpC/TSA family D5125_RS07170 PF01521 Iron-sulphur cluster biosynthesis D5125_RS07190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5125_RS07195 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain D5125_RS07195 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D5125_RS07200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_RS07200 PF02874 ATP synthase alpha/beta family, beta-barrel domain D5125_RS07205 PF00231 ATP synthase D5125_RS07210 PF02874 ATP synthase alpha/beta family, beta-barrel domain D5125_RS07210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_RS07210 PF00306 ATP synthase alpha/beta chain, C terminal domain D5125_RS07215 PF00213 ATP synthase delta (OSCP) subunit D5125_RS07220 PF00430 ATP synthase B/B' CF(0) D5125_RS07225 PF00137 ATP synthase subunit C D5125_RS07230 PF00119 ATP synthase A chain D5125_RS07240 PF17762 HTH domain found in ParB protein D5125_RS07240 PF02195 ParB-like nuclease domain D5125_RS07245 PF13614 AAA domain D5125_RS07250 PF00072 Response regulator receiver domain D5125_RS07250 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS07255 PF02527 rRNA small subunit methyltransferase G D5125_RS07260 PF01134 Glucose inhibited division protein A D5125_RS07260 PF13932 GidA associated domain D5125_RS07265 PF17863 AAA lid domain D5125_RS07265 PF07726 ATPase family associated with various cellular activities (AAA) D5125_RS07275 PF13559 Domain of unknown function (DUF4129) D5125_RS07275 PF11992 Domain of unknown function (DUF3488) D5125_RS07275 PF01841 Transglutaminase-like superfamily D5125_RS07280 PF01926 50S ribosome-binding GTPase D5125_RS07280 PF12631 MnmE helical domain D5125_RS07280 PF10396 GTP-binding protein TrmE N-terminus D5125_RS07285 PF14849 YidC periplasmic domain D5125_RS07285 PF02096 60Kd inner membrane protein D5125_RS07290 PF00825 Ribonuclease P D5125_RS07295 PF00468 Ribosomal protein L34 D5125_RS07300 PF08299 Bacterial dnaA protein helix-turn-helix D5125_RS07300 PF11638 DnaA N-terminal domain D5125_RS07300 PF00308 Bacterial dnaA protein D5125_RS07305 PF02768 DNA polymerase III beta subunit, C-terminal domain D5125_RS07305 PF00712 DNA polymerase III beta subunit, N-terminal domain D5125_RS07305 PF02767 DNA polymerase III beta subunit, central domain D5125_RS07310 PF02463 RecF/RecN/SMC N terminal domain D5125_RS07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS07315 PF18053 DNA gyrase B subunit insert domain D5125_RS07315 PF00204 DNA gyrase B D5125_RS07315 PF01751 Toprim domain D5125_RS07315 PF00986 DNA gyrase B subunit, carboxyl terminus D5125_RS07325 PF02092 Glycyl-tRNA synthetase beta subunit D5125_RS07325 PF05746 DALR anticodon binding domain D5125_RS07330 PF02091 Glycyl-tRNA synthetase alpha subunit D5125_RS07345 PF01545 Cation efflux family D5125_RS07345 PF16916 Dimerisation domain of Zinc Transporter D5125_RS07350 PF00120 Glutamine synthetase, catalytic domain D5125_RS07350 PF03951 Glutamine synthetase, beta-Grasp domain D5125_RS07360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS07360 PF00989 PAS fold D5125_RS07360 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS07365 PF00158 Sigma-54 interaction domain D5125_RS07365 PF02954 Bacterial regulatory protein, Fis family D5125_RS07365 PF00072 Response regulator receiver domain D5125_RS07380 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D5125_RS07380 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D5125_RS07390 PF02386 Cation transport protein D5125_RS07395 PF03652 Holliday junction resolvase D5125_RS07400 PF02622 Uncharacterized ACR, COG1678 D5125_RS07410 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D5125_RS07415 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D5125_RS07420 PF16653 Saccharopine dehydrogenase C-terminal domain D5125_RS07420 PF03435 Saccharopine dehydrogenase NADP binding domain D5125_RS07425 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D5125_RS07430 PF00583 Acetyltransferase (GNAT) family D5125_RS07430 PF00795 Carbon-nitrogen hydrolase D5125_RS07435 PF17810 Arginine decarboxylase helical bundle domain D5125_RS07435 PF17944 Arginine decarboxylase C-terminal helical extension D5125_RS07435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D5125_RS07445 PF07690 Major Facilitator Superfamily D5125_RS07450 PF01784 NIF3 (NGG1p interacting factor 3) D5125_RS07455 PF13180 PDZ domain D5125_RS07455 PF00595 PDZ domain D5125_RS07460 PF00155 Aminotransferase class I and II D5125_RS07475 PF00815 Histidinol dehydrogenase D5125_RS07480 PF01634 ATP phosphoribosyltransferase D5125_RS07485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D5125_RS07490 PF00005 ABC transporter D5125_RS07495 PF13472 GDSL-like Lipase/Acylhydrolase family D5125_RS07500 PF01964 Radical SAM ThiC family D5125_RS07500 PF13667 ThiC-associated domain D5125_RS07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS07515 PF00072 Response regulator receiver domain D5125_RS07515 PF00486 Transcriptional regulatory protein, C terminal D5125_RS07540 PF02470 MlaD protein D5125_RS07545 PF02405 Permease MlaE D5125_RS07550 PF00005 ABC transporter D5125_RS07555 PF01235 Sodium:alanine symporter family D5125_RS07585 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D5125_RS07590 PF01609 Transposase DDE domain D5125_RS07620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D5125_RS07620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D5125_RS07630 PF01022 Bacterial regulatory protein, arsR family D5125_RS07635 PF03773 Predicted permease D5125_RS07640 PF00975 Thioesterase domain D5125_RS07650 PF00483 Nucleotidyl transferase D5125_RS07670 PF02569 Pantoate-beta-alanine ligase D5125_RS07675 PF02548 Ketopantoate hydroxymethyltransferase D5125_RS07680 PF01712 Deoxynucleoside kinase D5125_RS07685 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D5125_RS07690 PF01743 Poly A polymerase head domain D5125_RS07690 PF12627 Probable RNA and SrmB- binding site of polymerase A D5125_RS07690 PF12626 Polymerase A arginine-rich C-terminus D5125_RS07695 PF00211 Adenylate and Guanylate cyclase catalytic domain D5125_RS07695 PF00072 Response regulator receiver domain D5125_RS07720 PF01850 PIN domain D5125_RS07730 PF00268 Ribonucleotide reductase, small chain D5125_RS07735 PF00317 Ribonucleotide reductase, all-alpha domain D5125_RS07735 PF02867 Ribonucleotide reductase, barrel domain D5125_RS07735 PF03477 ATP cone domain D5125_RS07740 PF03167 Uracil DNA glycosylase superfamily D5125_RS07745 PF00196 Bacterial regulatory proteins, luxR family D5125_RS07745 PF00072 Response regulator receiver domain D5125_RS07760 PF00005 ABC transporter D5125_RS07760 PF12848 ABC transporter D5125_RS07765 PF01541 GIY-YIG catalytic domain D5125_RS07765 PF08459 UvrC Helix-hairpin-helix N-terminal D5125_RS07765 PF02151 UvrB/uvrC motif D5125_RS07770 PF01066 CDP-alcohol phosphatidyltransferase D5125_RS07785 PF04715 Anthranilate synthase component I, N terminal region D5125_RS07785 PF00425 chorismate binding enzyme D5125_RS07790 PF00072 Response regulator receiver domain D5125_RS07800 PF01979 Amidohydrolase family D5125_RS07810 PF00132 Bacterial transferase hexapeptide (six repeats) D5125_RS07810 PF12804 MobA-like NTP transferase domain D5125_RS07810 PF14602 Hexapeptide repeat of succinyl-transferase D5125_RS07815 PF01380 SIS domain D5125_RS07820 PF00899 ThiF family D5125_RS07825 PF12419 SNF2 Helicase protein D5125_RS07825 PF00271 Helicase conserved C-terminal domain D5125_RS07825 PF00176 SNF2 family N-terminal domain D5125_RS07830 PF00145 C-5 cytosine-specific DNA methylase D5125_RS07880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D5125_RS07880 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS07935 PF02817 e3 binding domain D5125_RS07935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D5125_RS07935 PF00364 Biotin-requiring enzyme D5125_RS07940 PF00456 Transketolase, thiamine diphosphate binding domain D5125_RS07940 PF17831 Pyruvate dehydrogenase E1 component middle domain D5125_RS07955 PF04333 MlaA lipoprotein D5125_RS07960 PF00929 Exonuclease D5125_RS07965 PF00462 Glutaredoxin D5125_RS07970 PF13537 Glutamine amidotransferase domain D5125_RS07970 PF00733 Asparagine synthase D5125_RS07975 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D5125_RS07975 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D5125_RS07980 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D5125_RS07980 PF02780 Transketolase, C-terminal domain D5125_RS07980 PF02779 Transketolase, pyrimidine binding domain D5125_RS07985 PF01751 Toprim domain D5125_RS07985 PF01131 DNA topoisomerase D5125_RS07985 PF13368 Topoisomerase C-terminal repeat D5125_RS07990 PF04361 Protein of unknown function (DUF494) D5125_RS07995 PF17782 DprA winged helix domain D5125_RS07995 PF02481 DNA recombination-mediator protein A D5125_RS08005 PF01327 Polypeptide deformylase D5125_RS08010 PF00072 Response regulator receiver domain D5125_RS08020 PF00890 FAD binding domain D5125_RS08025 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit D5125_RS08025 PF13187 4Fe-4S dicluster domain D5125_RS08030 PF04102 SlyX D5125_RS08040 PF00072 Response regulator receiver domain D5125_RS08045 PF00672 HAMP domain D5125_RS08045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS08045 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS08045 PF01627 Hpt domain D5125_RS08045 PF00072 Response regulator receiver domain D5125_RS08045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS08050 PF00578 AhpC/TSA family D5125_RS08055 PF13718 GNAT acetyltransferase 2 D5125_RS08055 PF05127 Helicase D5125_RS08055 PF17176 tRNA-binding domain D5125_RS08055 PF08351 Domain of unknown function (DUF1726) D5125_RS08060 PF00669 Bacterial flagellin N-terminal helical region D5125_RS08060 PF00700 Bacterial flagellin C-terminal helical region D5125_RS08065 PF08443 RimK-like ATP-grasp domain D5125_RS08065 PF18030 RimK PreATP-grasp domain D5125_RS08075 PF08443 RimK-like ATP-grasp domain D5125_RS08075 PF18030 RimK PreATP-grasp domain D5125_RS08090 PF07690 Major Facilitator Superfamily D5125_RS08095 PF01553 Acyltransferase D5125_RS08095 PF00501 AMP-binding enzyme D5125_RS08100 PF00158 Sigma-54 interaction domain D5125_RS08100 PF01590 GAF domain D5125_RS08105 PF01590 GAF domain D5125_RS08105 PF05524 PEP-utilising enzyme, N-terminal D5125_RS08105 PF00391 PEP-utilising enzyme, mobile domain D5125_RS08105 PF02896 PEP-utilising enzyme, TIM barrel domain D5125_RS08110 PF00293 NUDIX domain D5125_RS08120 PF01032 FecCD transport family D5125_RS08125 PF00005 ABC transporter D5125_RS08135 PF01627 Hpt domain D5125_RS08135 PF00672 HAMP domain D5125_RS08135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS08135 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS08135 PF00072 Response regulator receiver domain D5125_RS08135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS08160 PF01502 Phosphoribosyl-AMP cyclohydrolase D5125_RS08165 PF16123 Hydroxyacylglutathione hydrolase C-terminus D5125_RS08165 PF00753 Metallo-beta-lactamase superfamily D5125_RS08170 PF13361 UvrD-like helicase C-terminal domain D5125_RS08170 PF00580 UvrD/REP helicase N-terminal domain D5125_RS08180 PF00072 Response regulator receiver domain D5125_RS08185 PF00303 Thymidylate synthase D5125_RS08190 PF01609 Transposase DDE domain D5125_RS08195 PF00145 C-5 cytosine-specific DNA methylase D5125_RS08210 PF00582 Universal stress protein family D5125_RS08215 PF17946 RecC C-terminal domain D5125_RS08220 PF13361 UvrD-like helicase C-terminal domain D5125_RS08220 PF00580 UvrD/REP helicase N-terminal domain D5125_RS08220 PF12705 PD-(D/E)XK nuclease superfamily D5125_RS08225 PF13538 UvrD-like helicase C-terminal domain D5125_RS08235 PF04452 RNA methyltransferase D5125_RS08240 PF06827 Zinc finger found in FPG and IleRS D5125_RS08240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D5125_RS08240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D5125_RS08260 PF00005 ABC transporter D5125_RS08265 PF03695 Uncharacterised protein family (UPF0149) D5125_RS08265 PF02810 SEC-C motif D5125_RS08270 PF05872 Bacterial protein of unknown function (DUF853) D5125_RS08280 PF00072 Response regulator receiver domain D5125_RS08280 PF01627 Hpt domain D5125_RS08280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS08280 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_RS08280 PF01584 CheW-like domain D5125_RS08285 PF01627 Hpt domain D5125_RS08285 PF07194 P2 response regulator binding domain D5125_RS08285 PF02895 Signal transducing histidine kinase, homodimeric domain D5125_RS08285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS08285 PF01584 CheW-like domain D5125_RS08290 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D5125_RS08290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS08295 PF01584 CheW-like domain D5125_RS08300 PF00072 Response regulator receiver domain D5125_RS08305 PF00072 Response regulator receiver domain D5125_RS08320 PF00072 Response regulator receiver domain D5125_RS08320 PF01627 Hpt domain D5125_RS08320 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS08320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS08320 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_RS08320 PF00672 HAMP domain D5125_RS08325 PF00585 C-terminal regulatory domain of Threonine dehydratase D5125_RS08325 PF00291 Pyridoxal-phosphate dependent enzyme D5125_RS08330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D5125_RS08340 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS08340 PF03707 Bacterial signalling protein N terminal repeat D5125_RS08340 PF00563 EAL domain D5125_RS08345 PF00571 CBS domain D5125_RS08345 PF01380 SIS domain D5125_RS08350 PF01699 Sodium/calcium exchanger protein D5125_RS08365 PF10672 S-adenosylmethionine-dependent methyltransferase D5125_RS08365 PF17785 PUA-like domain D5125_RS08370 PF01790 Prolipoprotein diacylglyceryl transferase D5125_RS08375 PF12697 Alpha/beta hydrolase family D5125_RS08380 PF00224 Pyruvate kinase, barrel domain D5125_RS08380 PF02887 Pyruvate kinase, alpha/beta domain D5125_RS08385 PF00764 Arginosuccinate synthase D5125_RS08390 PF00289 Biotin carboxylase, N-terminal domain D5125_RS08390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D5125_RS08390 PF02785 Biotin carboxylase C-terminal domain D5125_RS08395 PF00364 Biotin-requiring enzyme D5125_RS08395 PF00682 HMGL-like D5125_RS08395 PF02436 Conserved carboxylase domain D5125_RS08400 PF00437 Type II/IV secretion system protein D5125_RS08400 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D5125_RS08405 PF01966 HD domain D5125_RS08405 PF11871 Domain of unknown function (DUF3391) D5125_RS08410 PF00476 DNA polymerase family A D5125_RS08410 PF01367 5'-3' exonuclease, C-terminal SAM fold D5125_RS08410 PF01612 3'-5' exonuclease D5125_RS08410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D5125_RS08445 PF01584 CheW-like domain D5125_RS08445 PF00072 Response regulator receiver domain D5125_RS08450 PF01739 CheR methyltransferase, SAM binding domain D5125_RS08450 PF03705 CheR methyltransferase, all-alpha domain D5125_RS08455 PF00460 Flagella basal body rod protein D5125_RS08460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_RS08460 PF00460 Flagella basal body rod protein D5125_RS08470 PF03963 Flagellar hook capping protein - N-terminal region D5125_RS08475 PF00460 Flagella basal body rod protein D5125_RS08475 PF07559 Flagellar basal body protein FlaE D5125_RS08475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_RS08480 PF00460 Flagella basal body rod protein D5125_RS08480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_RS08490 PF00575 S1 RNA binding domain D5125_RS08490 PF10150 Ribonuclease E/G family D5125_RS08495 PF03880 DbpA RNA binding domain D5125_RS08495 PF00271 Helicase conserved C-terminal domain D5125_RS08495 PF00270 DEAD/DEAH box helicase D5125_RS08500 PF14693 Ribosomal protein TL5, C-terminal domain D5125_RS08500 PF01386 Ribosomal L25p family D5125_RS08505 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D5125_RS08505 PF14572 Phosphoribosyl synthetase-associated domain D5125_RS08515 PF00288 GHMP kinases N terminal domain D5125_RS08515 PF08544 GHMP kinases C terminal D5125_RS08520 PF03550 Outer membrane lipoprotein LolB D5125_RS08530 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D5125_RS08530 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D5125_RS08530 PF01488 Shikimate / quinate 5-dehydrogenase D5125_RS08535 PF00472 RF-1 domain D5125_RS08535 PF03462 PCRF domain D5125_RS08540 PF05175 Methyltransferase small domain D5125_RS08540 PF17827 PrmC N-terminal domain D5125_RS08550 PF00899 ThiF family D5125_RS08555 PF05175 Methyltransferase small domain D5125_RS08560 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS08580 PF00034 Cytochrome c D5125_RS08585 PF03150 Di-haem cytochrome c peroxidase D5125_RS08585 PF00034 Cytochrome c D5125_RS08595 PF03264 NapC/NirT cytochrome c family, N-terminal region D5125_RS08600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_RS08605 PF01814 Hemerythrin HHE cation binding domain D5125_RS08620 PF02637 GatB domain D5125_RS08620 PF02934 GatB/GatE catalytic domain D5125_RS08625 PF01425 Amidase D5125_RS08630 PF02686 Glu-tRNAGln amidotransferase C subunit D5125_RS08650 PF00905 Penicillin binding protein transpeptidase domain D5125_RS08650 PF03717 Penicillin-binding Protein dimerisation domain D5125_RS08655 PF01098 Cell cycle protein D5125_RS08660 PF13406 Transglycosylase SLT domain D5125_RS08665 PF03330 Lytic transglycolase D5125_RS08665 PF05036 Sporulation related domain D5125_RS08670 PF07943 Penicillin-binding protein 5, C-terminal domain D5125_RS08670 PF00768 D-alanyl-D-alanine carboxypeptidase D5125_RS08675 PF01063 Amino-transferase class IV D5125_RS08680 PF04359 Protein of unknown function (DUF493) D5125_RS08685 PF03099 Biotin/lipoate A/B protein ligase family D5125_RS08690 PF04055 Radical SAM superfamily D5125_RS08695 PF04055 Radical SAM superfamily D5125_RS08695 PF06463 Molybdenum Cofactor Synthesis C D5125_RS08710 PF00994 Probable molybdopterin binding domain D5125_RS08715 PF00994 Probable molybdopterin binding domain D5125_RS08715 PF03454 MoeA C-terminal region (domain IV) D5125_RS08715 PF03453 MoeA N-terminal region (domain I and II) D5125_RS08720 PF02597 ThiS family D5125_RS08725 PF03459 TOBE domain D5125_RS08725 PF00005 ABC transporter D5125_RS08730 PF00999 Sodium/hydrogen exchanger family D5125_RS08735 PF00582 Universal stress protein family D5125_RS08740 PF00528 Binding-protein-dependent transport system inner membrane component D5125_RS08750 PF00118 TCP-1/cpn60 chaperonin family D5125_RS08755 PF00166 Chaperonin 10 Kd subunit D5125_RS08760 PF03707 Bacterial signalling protein N terminal repeat D5125_RS08760 PF00563 EAL domain D5125_RS08760 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS08770 PF00155 Aminotransferase class I and II D5125_RS08775 PF00742 Homoserine dehydrogenase D5125_RS08775 PF01842 ACT domain D5125_RS08775 PF03447 Homoserine dehydrogenase, NAD binding domain D5125_RS08785 PF00886 Ribosomal protein S16 D5125_RS08790 PF01782 RimM N-terminal domain D5125_RS08790 PF05239 PRC-barrel domain D5125_RS08795 PF01746 tRNA (Guanine-1)-methyltransferase D5125_RS08800 PF01245 Ribosomal protein L19 D5125_RS08815 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS08815 PF00563 EAL domain D5125_RS08815 PF03707 Bacterial signalling protein N terminal repeat D5125_RS08820 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D5125_RS08820 PF00355 Rieske [2Fe-2S] domain D5125_RS08825 PF00033 Cytochrome b/b6/petB D5125_RS08825 PF00032 Cytochrome b(C-terminal)/b6/petD D5125_RS08830 PF02167 Cytochrome C1 family D5125_RS08835 PF02798 Glutathione S-transferase, N-terminal domain D5125_RS08835 PF00043 Glutathione S-transferase, C-terminal domain D5125_RS08840 PF04386 Stringent starvation protein B D5125_RS08855 PF00873 AcrB/AcrD/AcrF family D5125_RS08860 PF00588 SpoU rRNA Methylase family D5125_RS08865 PF01180 Dihydroorotate dehydrogenase D5125_RS08870 PF03597 Cytochrome oxidase maturation protein cbb3-type D5125_RS08885 PF00403 Heavy-metal-associated domain D5125_RS08895 PF08241 Methyltransferase domain D5125_RS08900 PF00561 alpha/beta hydrolase fold D5125_RS08905 PF01966 HD domain D5125_RS08905 PF13286 Phosphohydrolase-associated domain D5125_RS08915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS08915 PF00672 HAMP domain D5125_RS08915 PF01627 Hpt domain D5125_RS08915 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS08915 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS08915 PF00072 Response regulator receiver domain D5125_RS08920 PF03480 Bacterial extracellular solute-binding protein, family 7 D5125_RS08925 PF01726 LexA DNA binding domain D5125_RS08925 PF00717 Peptidase S24-like D5125_RS08945 PF02384 N-6 DNA Methylase D5125_RS08945 PF12161 HsdM N-terminal domain D5125_RS08950 PF17761 DUF1016 N-terminal domain D5125_RS08950 PF06250 YhcG PDDEXK nuclease domain D5125_RS08955 PF01420 Type I restriction modification DNA specificity domain D5125_RS08960 PF13749 Putative ATP-dependent DNA helicase recG C-terminal D5125_RS08960 PF00270 DEAD/DEAH box helicase D5125_RS08960 PF17191 RecG wedge domain D5125_RS08975 PF00486 Transcriptional regulatory protein, C terminal D5125_RS08975 PF00072 Response regulator receiver domain D5125_RS08980 PF03600 Citrate transporter D5125_RS08980 PF02080 TrkA-C domain D5125_RS08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_RS08985 PF03466 LysR substrate binding domain D5125_RS09000 PF17820 PDZ domain D5125_RS09000 PF18509 Magnetochrome domain D5125_RS09010 PF01545 Cation efflux family D5125_RS09010 PF16916 Dimerisation domain of Zinc Transporter D5125_RS09015 PF01925 Sulfite exporter TauE/SafE D5125_RS09020 PF07719 Tetratricopeptide repeat D5125_RS09025 PF04011 LemA family D5125_RS09035 PF16916 Dimerisation domain of Zinc Transporter D5125_RS09035 PF01545 Cation efflux family D5125_RS09045 PF18509 Magnetochrome domain D5125_RS09060 PF00083 Sugar (and other) transporter D5125_RS09060 PF07690 Major Facilitator Superfamily D5125_RS09070 PF18509 Magnetochrome domain D5125_RS09070 PF17820 PDZ domain D5125_RS09130 PF13187 4Fe-4S dicluster domain D5125_RS09130 PF12838 4Fe-4S dicluster domain D5125_RS09150 PF00248 Aldo/keto reductase family D5125_RS09155 PF03707 Bacterial signalling protein N terminal repeat D5125_RS09155 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS09155 PF00563 EAL domain D5125_RS09160 PF03707 Bacterial signalling protein N terminal repeat D5125_RS09160 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS09160 PF00563 EAL domain D5125_RS09165 PF11871 Domain of unknown function (DUF3391) D5125_RS09165 PF01966 HD domain D5125_RS09170 PF00873 AcrB/AcrD/AcrF family D5125_RS09175 PF13533 Biotin-lipoyl like D5125_RS09180 PF08668 HDOD domain D5125_RS09180 PF00563 EAL domain D5125_RS09190 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS09190 PF03707 Bacterial signalling protein N terminal repeat D5125_RS09190 PF00563 EAL domain D5125_RS09195 PF00365 Phosphofructokinase D5125_RS09200 PF00005 ABC transporter D5125_RS09200 PF12848 ABC transporter D5125_RS09205 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS09205 PF09820 Predicted AAA-ATPase D5125_RS09210 PF09820 Predicted AAA-ATPase D5125_RS09210 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS09215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS09215 PF00672 HAMP domain D5125_RS09215 PF12729 Four helix bundle sensory module for signal transduction D5125_RS09220 PF01339 CheB methylesterase D5125_RS09220 PF00072 Response regulator receiver domain D5125_RS09225 PF01739 CheR methyltransferase, SAM binding domain D5125_RS09230 PF01627 Hpt domain D5125_RS09230 PF01584 CheW-like domain D5125_RS09230 PF00072 Response regulator receiver domain D5125_RS09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS09235 PF00158 Sigma-54 interaction domain D5125_RS09235 PF00072 Response regulator receiver domain D5125_RS09240 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS09260 PF01695 IstB-like ATP binding protein D5125_RS09265 PF00665 Integrase core domain D5125_RS09325 PF00589 Phage integrase family D5125_RS09325 PF02899 Phage integrase, N-terminal SAM-like domain D5125_RS09390 PF00155 Aminotransferase class I and II D5125_RS09395 PF02151 UvrB/uvrC motif D5125_RS09395 PF17757 UvrB interaction domain D5125_RS09395 PF00271 Helicase conserved C-terminal domain D5125_RS09395 PF12344 Ultra-violet resistance protein B D5125_RS09395 PF04851 Type III restriction enzyme, res subunit D5125_RS09405 PF01300 Telomere recombination D5125_RS09415 PF00719 Inorganic pyrophosphatase D5125_RS09425 PF01967 MoaC family D5125_RS09430 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D5125_RS09435 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D5125_RS09445 PF00456 Transketolase, thiamine diphosphate binding domain D5125_RS09445 PF02779 Transketolase, pyrimidine binding domain D5125_RS09445 PF02780 Transketolase, C-terminal domain D5125_RS09450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D5125_RS09450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D5125_RS09455 PF00162 Phosphoglycerate kinase D5125_RS09460 PF00224 Pyruvate kinase, barrel domain D5125_RS09460 PF02887 Pyruvate kinase, alpha/beta domain D5125_RS09465 PF01116 Fructose-bisphosphate aldolase class-II D5125_RS09480 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D5125_RS09500 PF12631 MnmE helical domain D5125_RS09500 PF10396 GTP-binding protein TrmE N-terminus D5125_RS09500 PF01926 50S ribosome-binding GTPase D5125_RS09505 PF01926 50S ribosome-binding GTPase D5125_RS09505 PF12631 MnmE helical domain D5125_RS09505 PF10396 GTP-binding protein TrmE N-terminus D5125_RS09510 PF00285 Citrate synthase, C-terminal domain D5125_RS09515 PF00390 Malic enzyme, N-terminal domain D5125_RS09515 PF03949 Malic enzyme, NAD binding domain D5125_RS09530 PF01197 Ribosomal protein L31 D5125_RS09535 PF06968 Biotin and Thiamin Synthesis associated domain D5125_RS09535 PF04055 Radical SAM superfamily D5125_RS09540 PF00155 Aminotransferase class I and II D5125_RS09565 PF02163 Peptidase family M50 D5125_RS09565 PF17820 PDZ domain D5125_RS09570 PF03411 Penicillin-insensitive murein endopeptidase D5125_RS09585 PF14489 QueF-like protein D5125_RS09590 PF00374 Nickel-dependent hydrogenase D5125_RS09595 PF09820 Predicted AAA-ATPase D5125_RS09595 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS09600 PF05685 Putative restriction endonuclease D5125_RS09620 PF01609 Transposase DDE domain D5125_RS09625 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5125_RS09630 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_RS09640 PF01381 Helix-turn-helix D5125_RS09650 PF07963 Prokaryotic N-terminal methylation motif D5125_RS09650 PF00114 Pilin (bacterial filament) D5125_RS09665 PF13847 Methyltransferase domain D5125_RS09665 PF03551 Transcriptional regulator PadR-like family D5125_RS09685 PF01381 Helix-turn-helix D5125_RS09710 PF05981 CreA protein D5125_RS09715 PF02601 Exonuclease VII, large subunit D5125_RS09715 PF13742 OB-fold nucleic acid binding domain D5125_RS09720 PF00571 CBS domain D5125_RS09720 PF00478 IMP dehydrogenase / GMP reductase domain D5125_RS09725 PF00117 Glutamine amidotransferase class-I D5125_RS09725 PF00958 GMP synthase C terminal domain D5125_RS09725 PF02540 NAD synthase D5125_RS09730 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB D5125_RS09760 PF12728 Helix-turn-helix domain D5125_RS09760 PF02661 Fic/DOC family D5125_RS09800 PF04358 DsrC like protein D5125_RS09825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D5125_RS09825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D5125_RS09830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D5125_RS09830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D5125_RS09835 PF02635 DsrE/DsrF-like family D5125_RS09840 PF02635 DsrE/DsrF-like family D5125_RS09845 PF04077 DsrH like protein D5125_RS09850 PF04358 DsrC like protein D5125_RS09865 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS09865 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5125_RS09875 PF13247 4Fe-4S dicluster domain D5125_RS09885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D5125_RS09885 PF07685 CobB/CobQ-like glutamine amidotransferase domain D5125_RS09905 PF02222 ATP-grasp domain D5125_RS09905 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D5125_RS09910 PF00731 AIR carboxylase D5125_RS09915 PF02719 Polysaccharide biosynthesis protein D5125_RS09920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_RS09925 PF00037 4Fe-4S binding domain D5125_RS09930 PF01467 Cytidylyltransferase-like D5125_RS09945 PF05193 Peptidase M16 inactive domain D5125_RS09945 PF00675 Insulinase (Peptidase family M16) D5125_RS09950 PF05193 Peptidase M16 inactive domain D5125_RS09950 PF00675 Insulinase (Peptidase family M16) D5125_RS09955 PF02881 SRP54-type protein, helical bundle domain D5125_RS09955 PF00448 SRP54-type protein, GTPase domain D5125_RS09960 PF00005 ABC transporter D5125_RS09965 PF18075 FtsX extracellular domain D5125_RS09970 PF17200 Single Cache domain 2 D5125_RS09970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS09970 PF00672 HAMP domain D5125_RS09975 PF04545 Sigma-70, region 4 D5125_RS09975 PF00140 Sigma-70 factor, region 1.2 D5125_RS09975 PF04542 Sigma-70 region 2 D5125_RS09995 PF01695 IstB-like ATP binding protein D5125_RS10000 PF00665 Integrase core domain D5125_RS10020 PF01420 Type I restriction modification DNA specificity domain D5125_RS10030 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D5125_RS10030 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D5125_RS10035 PF00101 Ribulose bisphosphate carboxylase, small chain D5125_RS10060 PF00936 BMC domain D5125_RS10065 PF00936 BMC domain D5125_RS10085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_RS10085 PF03466 LysR substrate binding domain D5125_RS10090 PF13439 Glycosyltransferase Family 4 D5125_RS10090 PF00534 Glycosyl transferases group 1 D5125_RS10105 PF12729 Four helix bundle sensory module for signal transduction D5125_RS10105 PF00672 HAMP domain D5125_RS10105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS10115 PF03707 Bacterial signalling protein N terminal repeat D5125_RS10115 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS10115 PF00563 EAL domain D5125_RS10130 PF00534 Glycosyl transferases group 1 D5125_RS10130 PF13439 Glycosyltransferase Family 4 D5125_RS10135 PF05685 Putative restriction endonuclease D5125_RS10145 PF01809 Putative membrane protein insertion efficiency factor D5125_RS10155 PF00571 CBS domain D5125_RS10170 PF13614 AAA domain D5125_RS10185 PF00871 Acetokinase family D5125_RS10190 PF07085 DRTGG domain D5125_RS10190 PF01515 Phosphate acetyl/butaryl transferase D5125_RS10210 PF00437 Type II/IV secretion system protein D5125_RS10215 PF00180 Isocitrate/isopropylmalate dehydrogenase D5125_RS10220 PF00313 'Cold-shock' DNA-binding domain D5125_RS10225 PF02617 ATP-dependent Clp protease adaptor protein ClpS D5125_RS10230 PF07724 AAA domain (Cdc48 subfamily) D5125_RS10230 PF17871 AAA lid domain D5125_RS10230 PF10431 C-terminal, D2-small domain, of ClpB protein D5125_RS10230 PF00004 ATPase family associated with various cellular activities (AAA) D5125_RS10230 PF02861 Clp amino terminal domain, pathogenicity island component D5125_RS10235 PF01176 Translation initiation factor 1A / IF-1 D5125_RS10240 PF03707 Bacterial signalling protein N terminal repeat D5125_RS10240 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS10240 PF00563 EAL domain D5125_RS10245 PF01339 CheB methylesterase D5125_RS10245 PF01739 CheR methyltransferase, SAM binding domain D5125_RS10245 PF03705 CheR methyltransferase, all-alpha domain D5125_RS10245 PF08448 PAS fold D5125_RS10250 PF00196 Bacterial regulatory proteins, luxR family D5125_RS10250 PF00072 Response regulator receiver domain D5125_RS10275 PF05114 Protein of unknown function (DUF692) D5125_RS10285 PF07681 DoxX D5125_RS10290 PF03707 Bacterial signalling protein N terminal repeat D5125_RS10290 PF00563 EAL domain D5125_RS10290 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS10290 PF13188 PAS domain D5125_RS10295 PF00672 HAMP domain D5125_RS10295 PF02743 Cache domain D5125_RS10295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS10300 PF00072 Response regulator receiver domain D5125_RS10300 PF01584 CheW-like domain D5125_RS10310 PF00842 Alanine racemase, C-terminal domain D5125_RS10310 PF01168 Alanine racemase, N-terminal domain D5125_RS10315 PF18073 Rubredoxin metal binding domain D5125_RS10320 PF17151 Periplasmic sensor domain D5125_RS10320 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS10325 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS10345 PF02666 Phosphatidylserine decarboxylase D5125_RS10355 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D5125_RS10355 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D5125_RS10360 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D5125_RS10365 PF02233 NAD(P) transhydrogenase beta subunit D5125_RS10390 PF00669 Bacterial flagellin N-terminal helical region D5125_RS10390 PF00700 Bacterial flagellin C-terminal helical region D5125_RS10395 PF00669 Bacterial flagellin N-terminal helical region D5125_RS10395 PF08884 Flagellin D3 domain D5125_RS10395 PF00700 Bacterial flagellin C-terminal helical region D5125_RS10400 PF03646 FlaG protein D5125_RS10405 PF07195 Flagellar hook-associated protein 2 C-terminus D5125_RS10405 PF07196 Flagellin hook IN motif D5125_RS10405 PF02465 Flagellar hook-associated protein 2 N-terminus D5125_RS10410 PF02561 Flagellar protein FliS D5125_RS10420 PF01578 Cytochrome C assembly protein D5125_RS10425 PF02978 Signal peptide binding domain D5125_RS10425 PF02881 SRP54-type protein, helical bundle domain D5125_RS10425 PF00448 SRP54-type protein, GTPase domain D5125_RS10430 PF05685 Putative restriction endonuclease D5125_RS10440 PF00696 Amino acid kinase family D5125_RS10440 PF00583 Acetyltransferase (GNAT) family D5125_RS10445 PF01546 Peptidase family M20/M25/M40 D5125_RS10445 PF07687 Peptidase dimerisation domain D5125_RS10450 PF00920 Dehydratase family D5125_RS10455 PF00742 Homoserine dehydrogenase D5125_RS10455 PF01842 ACT domain D5125_RS10455 PF03447 Homoserine dehydrogenase, NAD binding domain D5125_RS10455 PF00696 Amino acid kinase family D5125_RS10455 PF13840 ACT domain D5125_RS10460 PF01235 Sodium:alanine symporter family D5125_RS10465 PF00924 Mechanosensitive ion channel D5125_RS10475 PF07238 PilZ domain D5125_RS10480 PF01119 DNA mismatch repair protein, C-terminal domain D5125_RS10480 PF08676 MutL C terminal dimerisation domain D5125_RS10485 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D5125_RS10490 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_RS10495 PF13356 Arm DNA-binding domain D5125_RS10495 PF14659 Phage integrase, N-terminal SAM-like domain D5125_RS10495 PF00589 Phage integrase family D5125_RS10530 PF00436 Single-strand binding protein family D5125_RS10535 PF04231 Endonuclease I D5125_RS10570 PF04002 RadC-like JAB domain D5125_RS10575 PF08401 Domain of unknown function (DUF1738) D5125_RS10575 PF18818 Metallopeptidase superfamily domain D5125_RS10575 PF13362 Toprim domain D5125_RS10580 PF00216 Bacterial DNA-binding protein D5125_RS10590 PF01027 Inhibitor of apoptosis-promoting Bax1 D5125_RS10600 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) D5125_RS10605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5125_RS10605 PF02403 Seryl-tRNA synthetase N-terminal domain D5125_RS10615 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D5125_RS10640 PF01722 BolA-like protein D5125_RS10650 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D5125_RS10655 PF00085 Thioredoxin D5125_RS10660 PF00490 Delta-aminolevulinic acid dehydratase D5125_RS10680 PF03976 Polyphosphate kinase 2 (PPK2) D5125_RS10685 PF01865 Protein of unknown function DUF47 D5125_RS10690 PF01384 Phosphate transporter family D5125_RS10705 PF00989 PAS fold D5125_RS10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS10705 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS10705 PF00072 Response regulator receiver domain D5125_RS10705 PF18415 Histidine kinase receptor ArcB trans-membrane domain D5125_RS10705 PF01627 Hpt domain D5125_RS10710 PF00563 EAL domain D5125_RS10710 PF03707 Bacterial signalling protein N terminal repeat D5125_RS10710 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS10715 PF02616 Segregation and condensation protein ScpA D5125_RS10720 PF00579 tRNA synthetases class I (W and Y) D5125_RS10725 PF02163 Peptidase family M50 D5125_RS10730 PF01300 Telomere recombination D5125_RS10735 PF02811 PHP domain D5125_RS10745 PF01138 3' exoribonuclease family, domain 1 D5125_RS10745 PF03725 3' exoribonuclease family, domain 2 D5125_RS10745 PF00013 KH domain D5125_RS10745 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D5125_RS10745 PF00575 S1 RNA binding domain D5125_RS10750 PF00312 Ribosomal protein S15 D5125_RS10755 PF16198 tRNA pseudouridylate synthase B C-terminal domain D5125_RS10755 PF09157 Pseudouridine synthase II TruB, C-terminal D5125_RS10755 PF01509 TruB family pseudouridylate synthase (N terminal domain) D5125_RS10760 PF02033 Ribosome-binding factor A D5125_RS10765 PF11987 Translation-initiation factor 2 D5125_RS10765 PF03144 Elongation factor Tu domain 2 D5125_RS10765 PF08364 Bacterial translation initiation factor IF-2 associated region D5125_RS10765 PF00009 Elongation factor Tu GTP binding domain D5125_RS10765 PF04760 Translation initiation factor IF-2, N-terminal region D5125_RS10770 PF00575 S1 RNA binding domain D5125_RS10770 PF13184 NusA-like KH domain D5125_RS10770 PF08529 NusA N-terminal domain D5125_RS10775 PF02576 RimP N-terminal domain D5125_RS10775 PF17384 RimP C-terminal SH3 domain D5125_RS10785 PF03658 RnfH family Ubiquitin D5125_RS10790 PF03364 Polyketide cyclase / dehydrase and lipid transport D5125_RS10795 PF00209 Sodium:neurotransmitter symporter family D5125_RS10800 PF01668 SmpB protein D5125_RS10810 PF13356 Arm DNA-binding domain D5125_RS10810 PF14659 Phage integrase, N-terminal SAM-like domain D5125_RS10810 PF00589 Phage integrase family D5125_RS10815 PF01300 Telomere recombination D5125_RS10820 PF02163 Peptidase family M50 D5125_RS10825 PF00579 tRNA synthetases class I (W and Y) D5125_RS10830 PF02616 Segregation and condensation protein ScpA D5125_RS10835 PF00563 EAL domain D5125_RS10835 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS10835 PF03707 Bacterial signalling protein N terminal repeat D5125_RS10840 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS10840 PF01627 Hpt domain D5125_RS10840 PF00072 Response regulator receiver domain D5125_RS10840 PF00989 PAS fold D5125_RS10840 PF18415 Histidine kinase receptor ArcB trans-membrane domain D5125_RS10845 PF00145 C-5 cytosine-specific DNA methylase D5125_RS10865 PF01420 Type I restriction modification DNA specificity domain D5125_RS10875 PF13749 Putative ATP-dependent DNA helicase recG C-terminal D5125_RS10875 PF00270 DEAD/DEAH box helicase D5125_RS10875 PF17191 RecG wedge domain D5125_RS10895 PF00092 von Willebrand factor type A domain D5125_RS10895 PF07584 Aerotolerance regulator N-terminal D5125_RS10900 PF00092 von Willebrand factor type A domain D5125_RS10910 PF01882 Protein of unknown function DUF58 D5125_RS10915 PF17863 AAA lid domain D5125_RS10915 PF07726 ATPase family associated with various cellular activities (AAA) D5125_RS10920 PF00563 EAL domain D5125_RS10920 PF03707 Bacterial signalling protein N terminal repeat D5125_RS10920 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS10925 PF00510 Cytochrome c oxidase subunit III D5125_RS10935 PF00085 Thioredoxin D5125_RS10940 PF12794 Mechanosensitive ion channel inner membrane domain 1 D5125_RS10940 PF00924 Mechanosensitive ion channel D5125_RS10940 PF12795 Mechanosensitive ion channel porin domain D5125_RS10945 PF00762 Ferrochelatase D5125_RS10950 PF03734 L,D-transpeptidase catalytic domain D5125_RS10950 PF17969 L,D-transpeptidase C-terminal domain D5125_RS10970 PF00403 Heavy-metal-associated domain D5125_RS10990 PF00578 AhpC/TSA family D5125_RS11030 PF12704 MacB-like periplasmic core domain D5125_RS11030 PF02687 FtsX-like permease family D5125_RS11030 PF00005 ABC transporter D5125_RS11040 PF00543 Nitrogen regulatory protein P-II D5125_RS11045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D5125_RS11050 PF02348 Cytidylyltransferase D5125_RS11065 PF01488 Shikimate / quinate 5-dehydrogenase D5125_RS11065 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D5125_RS11065 PF08501 Shikimate dehydrogenase substrate binding domain D5125_RS11070 PF00873 AcrB/AcrD/AcrF family D5125_RS11090 PF01544 CorA-like Mg2+ transporter protein D5125_RS11105 PF00293 NUDIX domain D5125_RS11110 PF00535 Glycosyl transferase family 2 D5125_RS11130 PF13419 Haloacid dehalogenase-like hydrolase D5125_RS11135 PF00270 DEAD/DEAH box helicase D5125_RS11135 PF12300 ATP-dependent RNA helicase RhlB D5125_RS11135 PF00271 Helicase conserved C-terminal domain D5125_RS11140 PF00085 Thioredoxin D5125_RS11145 PF07498 Rho termination factor, N-terminal domain D5125_RS11145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_RS11145 PF07497 Rho termination factor, RNA-binding domain D5125_RS11165 PF02556 Preprotein translocase subunit SecB D5125_RS11170 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D5125_RS11170 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D5125_RS11175 PF09308 LuxQ, periplasmic D5125_RS11175 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS11175 PF00072 Response regulator receiver domain D5125_RS11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS11180 PF00158 Sigma-54 interaction domain D5125_RS11180 PF00072 Response regulator receiver domain D5125_RS11180 PF02954 Bacterial regulatory protein, Fis family D5125_RS11185 PF00072 Response regulator receiver domain D5125_RS11190 PF12833 Helix-turn-helix domain D5125_RS11195 PF01966 HD domain D5125_RS11195 PF01743 Poly A polymerase head domain D5125_RS11195 PF12627 Probable RNA and SrmB- binding site of polymerase A D5125_RS11200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D5125_RS11205 PF00672 HAMP domain D5125_RS11205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS11205 PF07730 Histidine kinase D5125_RS11205 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D5125_RS11210 PF00196 Bacterial regulatory proteins, luxR family D5125_RS11210 PF00072 Response regulator receiver domain D5125_RS11215 PF00581 Rhodanese-like domain D5125_RS11220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_RS11220 PF00529 HlyD membrane-fusion protein of T1SS D5125_RS11225 PF00873 AcrB/AcrD/AcrF family D5125_RS11235 PF00459 Inositol monophosphatase family D5125_RS11315 PF00665 Integrase core domain D5125_RS11320 PF01695 IstB-like ATP binding protein D5125_RS11340 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D5125_RS11380 PF00589 Phage integrase family D5125_RS11380 PF13495 Phage integrase, N-terminal SAM-like domain D5125_RS11385 PF02754 Cysteine-rich domain D5125_RS11390 PF13183 4Fe-4S dicluster domain D5125_RS11390 PF13085 2Fe-2S iron-sulfur cluster binding domain D5125_RS11395 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS11395 PF04324 BFD-like [2Fe-2S] binding domain D5125_RS11400 PF01593 Flavin containing amine oxidoreductase D5125_RS11405 PF08406 CbbQ/NirQ/NorQ C-terminal D5125_RS11405 PF07728 AAA domain (dynein-related subfamily) D5125_RS11410 PF00164 Ribosomal protein S12/S23 D5125_RS11415 PF00177 Ribosomal protein S7p/S5e D5125_RS11420 PF03144 Elongation factor Tu domain 2 D5125_RS11420 PF00009 Elongation factor Tu GTP binding domain D5125_RS11420 PF00679 Elongation factor G C-terminus D5125_RS11420 PF14492 Elongation Factor G, domain II D5125_RS11420 PF03764 Elongation factor G, domain IV D5125_RS11425 PF03143 Elongation factor Tu C-terminal domain D5125_RS11425 PF03144 Elongation factor Tu domain 2 D5125_RS11425 PF00009 Elongation factor Tu GTP binding domain D5125_RS11430 PF00338 Ribosomal protein S10p/S20e D5125_RS11435 PF00297 Ribosomal protein L3 D5125_RS11440 PF00573 Ribosomal protein L4/L1 family D5125_RS11445 PF00276 Ribosomal protein L23 D5125_RS11450 PF03947 Ribosomal Proteins L2, C-terminal domain D5125_RS11450 PF00181 Ribosomal Proteins L2, RNA binding domain D5125_RS11455 PF00203 Ribosomal protein S19 D5125_RS11460 PF00237 Ribosomal protein L22p/L17e D5125_RS11465 PF00189 Ribosomal protein S3, C-terminal domain D5125_RS11465 PF07650 KH domain D5125_RS11470 PF00252 Ribosomal protein L16p/L10e D5125_RS11475 PF00831 Ribosomal L29 protein D5125_RS11480 PF00366 Ribosomal protein S17 D5125_RS11485 PF00238 Ribosomal protein L14p/L23e D5125_RS11490 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D5125_RS11495 PF00281 Ribosomal protein L5 D5125_RS11495 PF00673 ribosomal L5P family C-terminus D5125_RS11500 PF00253 Ribosomal protein S14p/S29e D5125_RS11505 PF00410 Ribosomal protein S8 D5125_RS11510 PF00347 Ribosomal protein L6 D5125_RS11515 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D5125_RS11520 PF03719 Ribosomal protein S5, C-terminal domain D5125_RS11520 PF00333 Ribosomal protein S5, N-terminal domain D5125_RS11525 PF00327 Ribosomal protein L30p/L7e D5125_RS11530 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D5125_RS11535 PF00344 SecY translocase D5125_RS11540 PF00444 Ribosomal protein L36 D5125_RS11545 PF00416 Ribosomal protein S13/S18 D5125_RS11550 PF00411 Ribosomal protein S11 D5125_RS11555 PF00163 Ribosomal protein S4/S9 N-terminal domain D5125_RS11555 PF01479 S4 domain D5125_RS11560 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D5125_RS11560 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D5125_RS11560 PF01000 RNA polymerase Rpb3/RpoA insert domain D5125_RS11565 PF01196 Ribosomal protein L17 D5125_RS11575 PF00563 EAL domain D5125_RS11575 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS11575 PF08447 PAS fold D5125_RS11575 PF08448 PAS fold D5125_RS11585 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D5125_RS11585 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D5125_RS11590 PF00004 ATPase family associated with various cellular activities (AAA) D5125_RS11590 PF10431 C-terminal, D2-small domain, of ClpB protein D5125_RS11590 PF07724 AAA domain (Cdc48 subfamily) D5125_RS11595 PF00227 Proteasome subunit D5125_RS11600 PF02080 TrkA-C domain D5125_RS11600 PF02254 TrkA-N domain D5125_RS11605 PF00072 Response regulator receiver domain D5125_RS11605 PF00158 Sigma-54 interaction domain D5125_RS11605 PF02954 Bacterial regulatory protein, Fis family D5125_RS11610 PF00672 HAMP domain D5125_RS11610 PF00989 PAS fold D5125_RS11610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS11610 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS11620 PF01029 NusB family D5125_RS11620 PF01189 16S rRNA methyltransferase RsmB/F D5125_RS11625 PF00551 Formyl transferase D5125_RS11625 PF02911 Formyl transferase, C-terminal domain D5125_RS11660 PF03884 DNA gyrase inhibitor YacG D5125_RS11665 PF07072 Cell division protein D5125_RS11670 PF01121 Dephospho-CoA kinase D5125_RS11675 PF01478 Type IV leader peptidase family D5125_RS11675 PF06750 Bacterial Peptidase A24 N-terminal domain D5125_RS11680 PF00482 Type II secretion system (T2SS), protein F D5125_RS11685 PF00437 Type II/IV secretion system protein D5125_RS11685 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D5125_RS11690 PF05191 Adenylate kinase, active site lid D5125_RS11725 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D5125_RS11725 PF01676 Metalloenzyme superfamily D5125_RS11730 PF01551 Peptidase family M23 D5125_RS11735 PF13180 PDZ domain D5125_RS11735 PF03572 Peptidase family S41 D5125_RS11740 PF04748 Divergent polysaccharide deacetylase D5125_RS11745 PF01965 DJ-1/PfpI family D5125_RS11755 PF04023 FeoA domain D5125_RS11755 PF07670 Nucleoside recognition D5125_RS11755 PF02421 Ferrous iron transport protein B D5125_RS11755 PF17910 FeoB cytosolic helical domain D5125_RS11755 PF07664 Ferrous iron transport protein B C terminus D5125_RS11765 PF13609 Gram-negative porin D5125_RS11780 PF08264 Anticodon-binding domain of tRNA D5125_RS11780 PF00133 tRNA synthetases class I (I, L, M and V) D5125_RS11780 PF13603 Leucyl-tRNA synthetase, Domain 2 D5125_RS11810 PF07963 Prokaryotic N-terminal methylation motif D5125_RS11810 PF00114 Pilin (bacterial filament) D5125_RS11870 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_RS11875 PF00156 Phosphoribosyl transferase domain D5125_RS11880 PF01979 Amidohydrolase family D5125_RS11885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D5125_RS11885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D5125_RS11890 PF00156 Phosphoribosyl transferase domain D5125_RS11900 PF00731 AIR carboxylase D5125_RS11910 PF01725 Ham1 family D5125_RS11915 PF01138 3' exoribonuclease family, domain 1 D5125_RS11915 PF03725 3' exoribonuclease family, domain 2 D5125_RS11930 PF03755 YicC-like family, N-terminal region D5125_RS11930 PF08340 Domain of unknown function (DUF1732) D5125_RS11935 PF13356 Arm DNA-binding domain D5125_RS11935 PF00589 Phage integrase family D5125_RS11965 PF01695 IstB-like ATP binding protein D5125_RS12010 PF01420 Type I restriction modification DNA specificity domain D5125_RS12025 PF00271 Helicase conserved C-terminal domain D5125_RS12025 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_RS12025 PF08463 EcoEI R protein C-terminal D5125_RS12025 PF04851 Type III restriction enzyme, res subunit D5125_RS12060 PF14437 MafB19-like deaminase D5125_RS12065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5125_RS12065 PF10371 Domain of unknown function D5125_RS12065 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D5125_RS12065 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D5125_RS12065 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D5125_RS12070 PF13247 4Fe-4S dicluster domain D5125_RS12070 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS12070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D5125_RS12105 PF06490 Flagellar regulatory protein FleQ D5125_RS12105 PF00158 Sigma-54 interaction domain D5125_RS12105 PF02954 Bacterial regulatory protein, Fis family D5125_RS12110 PF02954 Bacterial regulatory protein, Fis family D5125_RS12110 PF00072 Response regulator receiver domain D5125_RS12110 PF00158 Sigma-54 interaction domain D5125_RS12115 PF02049 Flagellar hook-basal body complex protein FliE D5125_RS12120 PF08345 Flagellar M-ring protein C-terminal D5125_RS12120 PF01514 Secretory protein of YscJ/FliF family D5125_RS12125 PF14841 FliG middle domain D5125_RS12125 PF01706 FliG C-terminal domain D5125_RS12125 PF14842 FliG N-terminal domain D5125_RS12135 PF18269 T3SS EscN ATPase C-terminal domain D5125_RS12135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D5125_RS12150 PF01464 Transglycosylase SLT domain D5125_RS12160 PF00075 RNase H D5125_RS12165 PF00929 Exonuclease D5125_RS12170 PF00873 AcrB/AcrD/AcrF family D5125_RS12175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_RS12200 PF00883 Cytosol aminopeptidase family, catalytic domain D5125_RS12200 PF02789 Cytosol aminopeptidase family, N-terminal domain D5125_RS12205 PF00154 recA bacterial DNA recombination protein D5125_RS12210 PF02631 RecX family D5125_RS12220 PF03749 Sugar fermentation stimulation protein RE domain D5125_RS12220 PF17746 SfsA N-terminal OB domain D5125_RS12230 PF02272 DHHA1 domain D5125_RS12230 PF01411 tRNA synthetases class II (A) D5125_RS12230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D5125_RS12235 PF12704 MacB-like periplasmic core domain D5125_RS12235 PF02687 FtsX-like permease family D5125_RS12240 PF00005 ABC transporter D5125_RS12245 PF03466 LysR substrate binding domain D5125_RS12245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_RS12250 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D5125_RS12250 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D5125_RS12255 PF08406 CbbQ/NirQ/NorQ C-terminal D5125_RS12255 PF07728 AAA domain (dynein-related subfamily) D5125_RS12260 PF00092 von Willebrand factor type A domain D5125_RS12265 PF00106 short chain dehydrogenase D5125_RS12270 PF16921 Tex protein YqgF-like domain D5125_RS12270 PF09371 Tex-like protein N-terminal domain D5125_RS12270 PF00575 S1 RNA binding domain D5125_RS12270 PF17674 HHH domain D5125_RS12350 PF01975 Survival protein SurE D5125_RS12360 PF09335 SNARE associated Golgi protein D5125_RS12365 PF01551 Peptidase family M23 D5125_RS12365 PF01476 LysM domain D5125_RS12370 PF00140 Sigma-70 factor, region 1.2 D5125_RS12370 PF04542 Sigma-70 region 2 D5125_RS12370 PF04545 Sigma-70, region 4 D5125_RS12370 PF04539 Sigma-70 region 3 D5125_RS12375 PF00158 Sigma-54 interaction domain D5125_RS12375 PF02954 Bacterial regulatory protein, Fis family D5125_RS12375 PF00072 Response regulator receiver domain D5125_RS12380 PF00483 Nucleotidyl transferase D5125_RS12390 PF02446 4-alpha-glucanotransferase D5125_RS12405 PF00005 ABC transporter D5125_RS12410 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D5125_RS12410 PF02896 PEP-utilising enzyme, TIM barrel domain D5125_RS12410 PF00391 PEP-utilising enzyme, mobile domain D5125_RS12415 PF03618 Kinase/pyrophosphorylase D5125_RS12420 PF02562 PhoH-like protein D5125_RS12420 PF13638 PIN domain D5125_RS12425 PF00578 AhpC/TSA family D5125_RS12430 PF01842 ACT domain D5125_RS12435 PF00701 Dihydrodipicolinate synthetase family D5125_RS12440 PF06804 NlpB/DapX lipoprotein D5125_RS12445 PF07669 Eco57I restriction-modification methylase D5125_RS12450 PF17728 BsuBI/PstI restriction endonuclease HTH domain D5125_RS12450 PF06616 BsuBI/PstI restriction endonuclease domain D5125_RS12455 PF05233 PHB accumulation regulatory domain D5125_RS12455 PF07879 PHB/PHA accumulation regulator DNA-binding domain D5125_RS12460 PF00108 Thiolase, N-terminal domain D5125_RS12460 PF02803 Thiolase, C-terminal domain D5125_RS12465 PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) D5125_RS12470 PF00561 alpha/beta hydrolase fold D5125_RS12475 PF01979 Amidohydrolase family D5125_RS12480 PF03471 Transporter associated domain D5125_RS12480 PF00571 CBS domain D5125_RS12480 PF01595 Cyclin M transmembrane N-terminal domain D5125_RS12485 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D5125_RS12490 PF11734 TilS substrate C-terminal domain D5125_RS12490 PF09179 TilS substrate binding domain D5125_RS12490 PF01171 PP-loop family D5125_RS12500 PF00152 tRNA synthetases class II (D, K and N) D5125_RS12500 PF01336 OB-fold nucleic acid binding domain D5125_RS12505 PF01578 Cytochrome C assembly protein D5125_RS12505 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D5125_RS12510 PF08534 Redoxin D5125_RS12515 PF03918 Cytochrome C biogenesis protein D5125_RS12530 PF18073 Rubredoxin metal binding domain D5125_RS12535 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D5125_RS12540 PF01747 ATP-sulfurylase D5125_RS12540 PF14306 PUA-like domain D5125_RS12555 PF00529 HlyD membrane-fusion protein of T1SS D5125_RS12555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_RS12560 PF00873 AcrB/AcrD/AcrF family D5125_RS12570 PF00501 AMP-binding enzyme D5125_RS12570 PF13193 AMP-binding enzyme C-terminal domain D5125_RS12570 PF00668 Condensation domain D5125_RS12570 PF00550 Phosphopantetheine attachment site D5125_RS12570 PF00975 Thioesterase domain D5125_RS12575 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_RS12575 PF00550 Phosphopantetheine attachment site D5125_RS12575 PF00698 Acyl transferase domain D5125_RS12575 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_RS12575 PF14765 Polyketide synthase dehydratase D5125_RS12575 PF08659 KR domain D5125_RS12575 PF16197 Ketoacyl-synthetase C-terminal extension D5125_RS12575 PF08240 Alcohol dehydrogenase GroES-like domain D5125_RS12580 PF02543 Carbamoyltransferase N-terminus D5125_RS12580 PF16861 Carbamoyltransferase C-terminus D5125_RS12590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D5125_RS12590 PF03466 LysR substrate binding domain D5125_RS12595 PF04060 Putative Fe-S cluster D5125_RS12600 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D5125_RS12600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D5125_RS12600 PF10371 Domain of unknown function D5125_RS12600 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D5125_RS12600 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D5125_RS12605 PF08534 Redoxin D5125_RS12610 PF10531 SLBB domain D5125_RS12610 PF13375 RnfC Barrel sandwich hybrid domain D5125_RS12610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D5125_RS12610 PF13237 4Fe-4S dicluster domain D5125_RS12615 PF03116 NQR2, RnfD, RnfE family D5125_RS12620 PF04205 FMN-binding domain D5125_RS12625 PF02508 Rnf-Nqr subunit, membrane protein D5125_RS12630 PF02508 Rnf-Nqr subunit, membrane protein D5125_RS12640 PF00083 Sugar (and other) transporter D5125_RS12660 PF01850 PIN domain D5125_RS12665 PF09957 Bacterial antitoxin of type II TA system, VapB D5125_RS12710 PF00962 Adenosine/AMP deaminase D5125_RS12730 PF09827 CRISPR associated protein Cas2 D5125_RS12735 PF01867 CRISPR associated protein Cas1 D5125_RS12745 PF09827 CRISPR associated protein Cas2 D5125_RS12760 PF08240 Alcohol dehydrogenase GroES-like domain D5125_RS12760 PF00107 Zinc-binding dehydrogenase D5125_RS12775 PF02938 GAD domain D5125_RS12775 PF00152 tRNA synthetases class II (D, K and N) D5125_RS12775 PF01336 OB-fold nucleic acid binding domain D5125_RS12780 PF04381 Putative exonuclease, RdgC D5125_RS12785 PF01264 Chorismate synthase D5125_RS12790 PF12832 MFS_1 like family D5125_RS12805 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_RS12805 PF00034 Cytochrome c D5125_RS12805 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D5125_RS12810 PF00330 Aconitase family (aconitate hydratase) D5125_RS12815 PF00694 Aconitase C-terminal domain D5125_RS12820 PF00180 Isocitrate/isopropylmalate dehydrogenase D5125_RS12825 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5125_RS12825 PF02774 Semialdehyde dehydrogenase, dimerisation domain D5125_RS12830 PF01118 Semialdehyde dehydrogenase, NAD binding domain D5125_RS12830 PF02774 Semialdehyde dehydrogenase, dimerisation domain D5125_RS12840 PF01416 tRNA pseudouridine synthase D5125_RS12845 PF04940 Sensors of blue-light using FAD D5125_RS12845 PF00563 EAL domain D5125_RS12850 PF00672 HAMP domain D5125_RS12850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS12850 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS12850 PF00072 Response regulator receiver domain D5125_RS12850 PF01627 Hpt domain D5125_RS12850 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS12855 PF00072 Response regulator receiver domain D5125_RS12960 PF00563 EAL domain D5125_RS12960 PF03707 Bacterial signalling protein N terminal repeat D5125_RS12960 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS12965 PF13188 PAS domain D5125_RS12965 PF03707 Bacterial signalling protein N terminal repeat D5125_RS12965 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS12965 PF00563 EAL domain D5125_RS12970 PF08401 Domain of unknown function (DUF1738) D5125_RS12970 PF13362 Toprim domain D5125_RS12970 PF18818 Metallopeptidase superfamily domain D5125_RS12975 PF04851 Type III restriction enzyme, res subunit D5125_RS12975 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_RS12975 PF00271 Helicase conserved C-terminal domain D5125_RS12975 PF08463 EcoEI R protein C-terminal D5125_RS12980 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_RS12980 PF08463 EcoEI R protein C-terminal D5125_RS12980 PF00271 Helicase conserved C-terminal domain D5125_RS12980 PF04851 Type III restriction enzyme, res subunit D5125_RS13005 PF04480 Protein of unknown function (DUF559) D5125_RS13020 PF01420 Type I restriction modification DNA specificity domain D5125_RS13045 PF03309 Type III pantothenate kinase D5125_RS13050 PF02237 Biotin protein ligase C terminal domain D5125_RS13050 PF03099 Biotin/lipoate A/B protein ligase family D5125_RS13060 PF01597 Glycine cleavage H-protein D5125_RS13065 PF01571 Aminomethyltransferase folate-binding domain D5125_RS13065 PF08669 Glycine cleavage T-protein C-terminal barrel domain D5125_RS13070 PF03707 Bacterial signalling protein N terminal repeat D5125_RS13070 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS13070 PF00563 EAL domain D5125_RS13075 PF08448 PAS fold D5125_RS13075 PF03705 CheR methyltransferase, all-alpha domain D5125_RS13075 PF01739 CheR methyltransferase, SAM binding domain D5125_RS13075 PF01339 CheB methylesterase D5125_RS13085 PF01969 Protein of unknown function DUF111 D5125_RS13090 PF01740 STAS domain D5125_RS13090 PF00916 Sulfate permease family D5125_RS13105 PF02347 Glycine cleavage system P-protein D5125_RS13110 PF00294 pfkB family carbohydrate kinase D5125_RS13120 PF00186 Dihydrofolate reductase D5125_RS13130 PF02463 RecF/RecN/SMC N terminal domain D5125_RS13130 PF06470 SMC proteins Flexible Hinge Domain D5125_RS13135 PF04354 ZipA, C-terminal FtsZ-binding domain D5125_RS13140 PF12826 Helix-hairpin-helix motif D5125_RS13140 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D5125_RS13140 PF03120 NAD-dependent DNA ligase OB-fold domain D5125_RS13140 PF01653 NAD-dependent DNA ligase adenylation domain D5125_RS13140 PF00533 BRCA1 C Terminus (BRCT) domain D5125_RS13145 PF02347 Glycine cleavage system P-protein D5125_RS13150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_RS13150 PF00460 Flagella basal body rod protein D5125_RS13155 PF02107 Flagellar L-ring protein D5125_RS13160 PF02119 Flagellar P-ring protein D5125_RS13165 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D5125_RS13165 PF10135 Rod binding protein D5125_RS13170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D5125_RS13170 PF00460 Flagella basal body rod protein D5125_RS13175 PF00669 Bacterial flagellin N-terminal helical region D5125_RS13190 PF18337 RapA N-terminal Tudor like domain D5125_RS13190 PF00176 SNF2 family N-terminal domain D5125_RS13190 PF00271 Helicase conserved C-terminal domain D5125_RS13190 PF18339 RapA N-terminal Tudor like domain 1 D5125_RS13190 PF12137 RNA polymerase recycling family C-terminal D5125_RS13195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS13195 PF00183 Hsp90 protein D5125_RS13200 PF13419 Haloacid dehalogenase-like hydrolase D5125_RS13205 PF01343 Peptidase family S49 D5125_RS13210 PF00486 Transcriptional regulatory protein, C terminal D5125_RS13210 PF00072 Response regulator receiver domain D5125_RS13215 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_RS13215 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS13215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS13215 PF00672 HAMP domain D5125_RS13215 PF01627 Hpt domain D5125_RS13215 PF00072 Response regulator receiver domain D5125_RS13220 PF01814 Hemerythrin HHE cation binding domain D5125_RS13225 PF00106 short chain dehydrogenase D5125_RS13230 PF13419 Haloacid dehalogenase-like hydrolase D5125_RS13240 PF03379 CcmB protein D5125_RS13245 PF00005 ABC transporter D5125_RS13250 PF02261 Aspartate decarboxylase D5125_RS13260 PF01740 STAS domain D5125_RS13260 PF00916 Sulfate permease family D5125_RS13270 PF00814 Glycoprotease family D5125_RS13285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5125_RS13290 PF04348 LppC putative lipoprotein D5125_RS13295 PF02021 Uncharacterised protein family UPF0102 D5125_RS13300 PF13580 SIS domain D5125_RS13305 PF04972 BON domain D5125_RS13310 PF01565 FAD binding domain D5125_RS13310 PF02913 FAD linked oxidases, C-terminal domain D5125_RS13315 PF04055 Radical SAM superfamily D5125_RS13315 PF00919 Uncharacterized protein family UPF0004 D5125_RS13315 PF01938 TRAM domain D5125_RS13320 PF02562 PhoH-like protein D5125_RS13325 PF02130 Uncharacterized protein family UPF0054 D5125_RS13330 PF00795 Carbon-nitrogen hydrolase D5125_RS13350 PF01875 Memo-like protein D5125_RS13355 PF01871 AMMECR1 D5125_RS13355 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D5125_RS13370 PF02673 Bacitracin resistance protein BacA D5125_RS13375 PF14824 Sirohaem biosynthesis protein central D5125_RS13375 PF10414 Sirohaem synthase dimerisation region D5125_RS13375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D5125_RS13380 PF00581 Rhodanese-like domain D5125_RS13385 PF01206 Sulfurtransferase TusA D5125_RS13390 PF13686 DsrE/DsrF/DrsH-like family D5125_RS13405 PF00581 Rhodanese-like domain D5125_RS13415 PF04204 Homoserine O-succinyltransferase D5125_RS13450 PF00672 HAMP domain D5125_RS13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS13450 PF00072 Response regulator receiver domain D5125_RS13450 PF01627 Hpt domain D5125_RS13450 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS13450 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS13455 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS13455 PF13426 PAS domain D5125_RS13455 PF08448 PAS fold D5125_RS13455 PF08447 PAS fold D5125_RS13455 PF05231 MASE1 D5125_RS13455 PF00563 EAL domain D5125_RS13460 PF00072 Response regulator receiver domain D5125_RS13480 PF12804 MobA-like NTP transferase domain D5125_RS13485 PF17768 RecJ OB domain D5125_RS13485 PF02272 DHHA1 domain D5125_RS13485 PF01368 DHH family D5125_RS13490 PF04751 Protein of unknown function (DUF615) D5125_RS13495 PF00550 Phosphopantetheine attachment site D5125_RS13495 PF00698 Acyl transferase domain D5125_RS13495 PF16197 Ketoacyl-synthetase C-terminal extension D5125_RS13495 PF00668 Condensation domain D5125_RS13495 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_RS13495 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_RS13500 PF00975 Thioesterase domain D5125_RS13500 PF13193 AMP-binding enzyme C-terminal domain D5125_RS13500 PF00550 Phosphopantetheine attachment site D5125_RS13500 PF00668 Condensation domain D5125_RS13500 PF00501 AMP-binding enzyme D5125_RS13505 PF00668 Condensation domain D5125_RS13505 PF00550 Phosphopantetheine attachment site D5125_RS13505 PF13193 AMP-binding enzyme C-terminal domain D5125_RS13505 PF00501 AMP-binding enzyme D5125_RS13520 PF00211 Adenylate and Guanylate cyclase catalytic domain D5125_RS13535 PF02915 Rubrerythrin D5125_RS13565 PF00293 NUDIX domain D5125_RS13575 PF08328 Adenylosuccinate lyase C-terminal D5125_RS13575 PF00206 Lyase D5125_RS13580 PF13419 Haloacid dehalogenase-like hydrolase D5125_RS13600 PF01541 GIY-YIG catalytic domain D5125_RS13605 PF04055 Radical SAM superfamily D5125_RS13605 PF06969 HemN C-terminal domain D5125_RS13610 PF00072 Response regulator receiver domain D5125_RS13610 PF00486 Transcriptional regulatory protein, C terminal D5125_RS13620 PF08448 PAS fold D5125_RS13620 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS13620 PF00563 EAL domain D5125_RS13630 PF01627 Hpt domain D5125_RS13630 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS13630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS13630 PF00072 Response regulator receiver domain D5125_RS13630 PF00672 HAMP domain D5125_RS13630 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_RS13640 PF01136 Peptidase family U32 D5125_RS13645 PF01136 Peptidase family U32 D5125_RS13650 PF02036 SCP-2 sterol transfer family D5125_RS13655 PF16199 Radical_SAM C-terminal domain D5125_RS13655 PF04055 Radical SAM superfamily D5125_RS13670 PF16177 Acetyl-coenzyme A synthetase N-terminus D5125_RS13670 PF00501 AMP-binding enzyme D5125_RS13670 PF13193 AMP-binding enzyme C-terminal domain D5125_RS13675 PF00929 Exonuclease D5125_RS13675 PF02811 PHP domain D5125_RS13675 PF14579 Helix-hairpin-helix motif D5125_RS13675 PF07733 Bacterial DNA polymerase III alpha NTPase domain D5125_RS13675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D5125_RS13680 PF00571 CBS domain D5125_RS13680 PF00478 IMP dehydrogenase / GMP reductase domain D5125_RS13735 PF00474 Sodium:solute symporter family D5125_RS13755 PF00873 AcrB/AcrD/AcrF family D5125_RS13775 PF04172 LrgB-like family D5125_RS13780 PF01627 Hpt domain D5125_RS13780 PF00072 Response regulator receiver domain D5125_RS13780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D5125_RS13780 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS13780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS13780 PF00672 HAMP domain D5125_RS13790 PF00356 Bacterial regulatory proteins, lacI family D5125_RS13795 PF03707 Bacterial signalling protein N terminal repeat D5125_RS13795 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS13795 PF00563 EAL domain D5125_RS13805 PF01618 MotA/TolQ/ExbB proton channel family D5125_RS13810 PF02472 Biopolymer transport protein ExbD/TolR D5125_RS13815 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D5125_RS13820 PF03966 Trm112p-like protein D5125_RS13825 PF02348 Cytidylyltransferase D5125_RS13830 PF12849 PBP superfamily domain D5125_RS13835 PF00528 Binding-protein-dependent transport system inner membrane component D5125_RS13840 PF00528 Binding-protein-dependent transport system inner membrane component D5125_RS13845 PF00005 ABC transporter D5125_RS13850 PF01895 PhoU domain D5125_RS13855 PF05175 Methyltransferase small domain D5125_RS13865 PF06969 HemN C-terminal domain D5125_RS13865 PF04055 Radical SAM superfamily D5125_RS13875 PF02568 Thiamine biosynthesis protein (ThiI) D5125_RS13875 PF02926 THUMP domain D5125_RS13880 PF02910 Fumarate reductase flavoprotein C-term D5125_RS13880 PF00890 FAD binding domain D5125_RS13885 PF08281 Sigma-70, region 4 D5125_RS13885 PF04542 Sigma-70 region 2 D5125_RS13905 PF13180 PDZ domain D5125_RS13910 PF06421 GTP-binding protein LepA C-terminus D5125_RS13910 PF00009 Elongation factor Tu GTP binding domain D5125_RS13910 PF00679 Elongation factor G C-terminus D5125_RS13915 PF10502 Signal peptidase, peptidase S26 D5125_RS13925 PF00035 Double-stranded RNA binding motif D5125_RS13925 PF14622 Ribonuclease-III-like D5125_RS13930 PF01926 50S ribosome-binding GTPase D5125_RS13930 PF07650 KH domain D5125_RS13935 PF02565 Recombination protein O C terminal D5125_RS13935 PF11967 Recombination protein O N terminal D5125_RS13940 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D5125_RS13950 PF00563 EAL domain D5125_RS13950 PF08448 PAS fold D5125_RS13950 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS13960 PF04055 Radical SAM superfamily D5125_RS13965 PF08207 Elongation factor P (EF-P) KOW-like domain D5125_RS13965 PF01132 Elongation factor P (EF-P) OB domain D5125_RS13965 PF09285 Elongation factor P, C-terminal D5125_RS13970 PF00152 tRNA synthetases class II (D, K and N) D5125_RS14005 PF03739 Lipopolysaccharide export system permease LptF/LptG D5125_RS14010 PF03739 Lipopolysaccharide export system permease LptF/LptG D5125_RS14020 PF01327 Polypeptide deformylase D5125_RS14030 PF02578 Multi-copper polyphenol oxidoreductase laccase D5125_RS14035 PF01479 S4 domain D5125_RS14035 PF00849 RNA pseudouridylate synthase D5125_RS14040 PF13525 Outer membrane lipoprotein D5125_RS14050 PF00004 ATPase family associated with various cellular activities (AAA) D5125_RS14050 PF07724 AAA domain (Cdc48 subfamily) D5125_RS14050 PF17871 AAA lid domain D5125_RS14050 PF02861 Clp amino terminal domain, pathogenicity island component D5125_RS14050 PF10431 C-terminal, D2-small domain, of ClpB protein D5125_RS14065 PF00684 DnaJ central domain D5125_RS14065 PF01556 DnaJ C terminal domain D5125_RS14065 PF00226 DnaJ domain D5125_RS14070 PF01370 NAD dependent epimerase/dehydratase family D5125_RS14070 PF08338 Domain of unknown function (DUF1731) D5125_RS14080 PF07690 Major Facilitator Superfamily D5125_RS14085 PF00436 Single-strand binding protein family D5125_RS14100 PF03477 ATP cone domain D5125_RS14100 PF13597 Anaerobic ribonucleoside-triphosphate reductase D5125_RS14105 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS14105 PF03707 Bacterial signalling protein N terminal repeat D5125_RS14105 PF00563 EAL domain D5125_RS14110 PF00873 AcrB/AcrD/AcrF family D5125_RS14115 PF13533 Biotin-lipoyl like D5125_RS14120 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D5125_RS14125 PF00291 Pyridoxal-phosphate dependent enzyme D5125_RS14130 PF00290 Tryptophan synthase alpha chain D5125_RS14135 PF17848 Acetyl-coA carboxylase zinc finger domain D5125_RS14135 PF01039 Carboxyl transferase domain D5125_RS14145 PF00313 'Cold-shock' DNA-binding domain D5125_RS14150 PF02875 Mur ligase family, glutamate ligase domain D5125_RS14150 PF08245 Mur ligase middle domain D5125_RS14165 PF02674 Colicin V production protein D5125_RS14170 PF00156 Phosphoribosyl transferase domain D5125_RS14175 PF01053 Cys/Met metabolism PLP-dependent enzyme D5125_RS14200 PF00773 RNB domain D5125_RS14205 PF16658 Class II release factor RF3, C-terminal domain D5125_RS14205 PF00009 Elongation factor Tu GTP binding domain D5125_RS14210 PF01595 Cyclin M transmembrane N-terminal domain D5125_RS14210 PF03471 Transporter associated domain D5125_RS14210 PF00571 CBS domain D5125_RS14215 PF00571 CBS domain D5125_RS14215 PF03471 Transporter associated domain D5125_RS14215 PF01595 Cyclin M transmembrane N-terminal domain D5125_RS14220 PF01008 Initiation factor 2 subunit family D5125_RS14225 PF03989 DNA gyrase C-terminal domain, beta-propeller D5125_RS14225 PF00521 DNA gyrase/topoisomerase IV, subunit A D5125_RS14230 PF00266 Aminotransferase class-V D5125_RS14235 PF01842 ACT domain D5125_RS14235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D5125_RS14235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D5125_RS14240 PF01842 ACT domain D5125_RS14240 PF01817 Chorismate mutase type II D5125_RS14240 PF00800 Prephenate dehydratase D5125_RS14245 PF03707 Bacterial signalling protein N terminal repeat D5125_RS14245 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS14245 PF00563 EAL domain D5125_RS14255 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D5125_RS14255 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D5125_RS14270 PF06250 YhcG PDDEXK nuclease domain D5125_RS14270 PF17761 DUF1016 N-terminal domain D5125_RS14300 PF00114 Pilin (bacterial filament) D5125_RS14300 PF07963 Prokaryotic N-terminal methylation motif D5125_RS14320 PF05567 Neisseria PilC beta-propeller domain D5125_RS14325 PF07963 Prokaryotic N-terminal methylation motif D5125_RS14325 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor D5125_RS14335 PF00732 GMC oxidoreductase D5125_RS14335 PF05199 GMC oxidoreductase D5125_RS14345 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS14345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS14345 PF00072 Response regulator receiver domain D5125_RS14345 PF09308 LuxQ, periplasmic D5125_RS14350 PF03023 Lipid II flippase MurJ D5125_RS14360 PF01584 CheW-like domain D5125_RS14370 PF00270 DEAD/DEAH box helicase D5125_RS14370 PF00271 Helicase conserved C-terminal domain D5125_RS14385 PF03264 NapC/NirT cytochrome c family, N-terminal region D5125_RS14400 PF02223 Thymidylate kinase D5125_RS14405 PF09115 DNA polymerase III, delta subunit, C terminal D5125_RS14415 PF01026 TatD related DNase D5125_RS14420 PF03976 Polyphosphate kinase 2 (PPK2) D5125_RS14425 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS14430 PF01580 FtsK/SpoIIIE family D5125_RS14430 PF17854 FtsK alpha domain D5125_RS14430 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D5125_RS14430 PF09397 Ftsk gamma domain D5125_RS14435 PF03548 Outer membrane lipoprotein carrier protein LolA D5125_RS14440 PF00004 ATPase family associated with various cellular activities (AAA) D5125_RS14440 PF16193 AAA C-terminal domain D5125_RS14440 PF12002 MgsA AAA+ ATPase C terminal D5125_RS14445 PF00211 Adenylate and Guanylate cyclase catalytic domain D5125_RS14450 PF00664 ABC transporter transmembrane region D5125_RS14450 PF00005 ABC transporter D5125_RS14455 PF02661 Fic/DOC family D5125_RS14460 PF04976 DMSO reductase anchor subunit (DmsC) D5125_RS14465 PF01648 4'-phosphopantetheinyl transferase superfamily D5125_RS14505 PF00486 Transcriptional regulatory protein, C terminal D5125_RS14505 PF00072 Response regulator receiver domain D5125_RS14510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS14515 PF02082 Transcriptional regulator D5125_RS14525 PF08461 Ribonuclease R winged-helix domain D5125_RS14525 PF17876 Cold shock domain D5125_RS14525 PF08206 Ribonuclease B OB domain D5125_RS14525 PF00773 RNB domain D5125_RS14525 PF00575 S1 RNA binding domain D5125_RS14530 PF00588 SpoU rRNA Methylase family D5125_RS14530 PF08032 RNA 2'-O ribose methyltransferase substrate binding D5125_RS14535 PF02545 Maf-like protein D5125_RS14545 PF01783 Ribosomal L32p protein family D5125_RS14550 PF02504 Fatty acid synthesis protein D5125_RS14555 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D5125_RS14555 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D5125_RS14560 PF00698 Acyl transferase domain D5125_RS14570 PF00550 Phosphopantetheine attachment site D5125_RS14575 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_RS14575 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_RS14580 PF01063 Amino-transferase class IV D5125_RS14585 PF02618 YceG-like family D5125_RS14605 PF00596 Class II Aldolase and Adducin N-terminal domain D5125_RS14610 PF03707 Bacterial signalling protein N terminal repeat D5125_RS14610 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS14610 PF00563 EAL domain D5125_RS14615 PF13545 Crp-like helix-turn-helix domain D5125_RS14615 PF00027 Cyclic nucleotide-binding domain D5125_RS14620 PF00465 Iron-containing alcohol dehydrogenase D5125_RS14665 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D5125_RS14700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_RS14775 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system D5125_RS14805 PF03412 Peptidase C39 family D5125_RS14805 PF00005 ABC transporter D5125_RS14805 PF00664 ABC transporter transmembrane region D5125_RS14830 PF04221 RelB antitoxin D5125_RS14860 PF16363 GDP-mannose 4,6 dehydratase D5125_RS14885 PF00005 ABC transporter D5125_RS14925 PF00005 ABC transporter D5125_RS14925 PF00664 ABC transporter transmembrane region D5125_RS15015 PF08241 Methyltransferase domain D5125_RS15020 PF16363 GDP-mannose 4,6 dehydratase D5125_RS15025 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D5125_RS15045 PF01934 Protein of unknown function DUF86 D5125_RS15070 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_RS15085 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH D5125_RS15110 PF13439 Glycosyltransferase Family 4 D5125_RS15110 PF00534 Glycosyl transferases group 1 D5125_RS15115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D5125_RS15115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D5125_RS15115 PF03129 Anticodon binding domain D5125_RS15115 PF02824 TGS domain D5125_RS15120 PF05198 Translation initiation factor IF-3, N-terminal domain D5125_RS15120 PF00707 Translation initiation factor IF-3, C-terminal domain D5125_RS15125 PF01632 Ribosomal protein L35 D5125_RS15130 PF00453 Ribosomal protein L20 D5125_RS15135 PF01409 tRNA synthetases class II core domain (F) D5125_RS15135 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D5125_RS15140 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D5125_RS15140 PF03484 tRNA synthetase B5 domain D5125_RS15140 PF03483 B3/4 domain D5125_RS15140 PF01588 Putative tRNA binding domain D5125_RS15140 PF03147 Ferredoxin-fold anticodon binding domain D5125_RS15145 PF00216 Bacterial DNA-binding protein D5125_RS15150 PF13411 MerR HTH family regulatory protein D5125_RS15160 PF09820 Predicted AAA-ATPase D5125_RS15160 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS15165 PF00698 Acyl transferase domain D5125_RS15190 PF04403 Paraquat-inducible protein A D5125_RS15195 PF04403 Paraquat-inducible protein A D5125_RS15200 PF02470 MlaD protein D5125_RS15205 PF13193 AMP-binding enzyme C-terminal domain D5125_RS15205 PF00668 Condensation domain D5125_RS15205 PF16197 Ketoacyl-synthetase C-terminal extension D5125_RS15205 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_RS15205 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_RS15205 PF00501 AMP-binding enzyme D5125_RS15205 PF08659 KR domain D5125_RS15205 PF14765 Polyketide synthase dehydratase D5125_RS15205 PF00550 Phosphopantetheine attachment site D5125_RS15210 PF00550 Phosphopantetheine attachment site D5125_RS15210 PF16197 Ketoacyl-synthetase C-terminal extension D5125_RS15210 PF00501 AMP-binding enzyme D5125_RS15210 PF00668 Condensation domain D5125_RS15210 PF13193 AMP-binding enzyme C-terminal domain D5125_RS15210 PF00109 Beta-ketoacyl synthase, N-terminal domain D5125_RS15210 PF02801 Beta-ketoacyl synthase, C-terminal domain D5125_RS15210 PF08659 KR domain D5125_RS15210 PF14765 Polyketide synthase dehydratase D5125_RS15225 PF04851 Type III restriction enzyme, res subunit D5125_RS15225 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D5125_RS15225 PF00271 Helicase conserved C-terminal domain D5125_RS15225 PF08463 EcoEI R protein C-terminal D5125_RS15235 PF02384 N-6 DNA Methylase D5125_RS15235 PF12161 HsdM N-terminal domain D5125_RS15245 PF01420 Type I restriction modification DNA specificity domain D5125_RS15250 PF02661 Fic/DOC family D5125_RS15250 PF13784 Fic/DOC family N-terminal D5125_RS15340 PF13166 AAA domain D5125_RS15345 PF12320 Type 5 capsule protein repressor C-terminal domain D5125_RS15345 PF00149 Calcineurin-like phosphoesterase D5125_RS15350 PF13476 AAA domain D5125_RS15360 PF00975 Thioesterase domain D5125_RS15360 PF00501 AMP-binding enzyme D5125_RS15360 PF13193 AMP-binding enzyme C-terminal domain D5125_RS15360 PF00550 Phosphopantetheine attachment site D5125_RS15360 PF00668 Condensation domain D5125_RS15365 PF02423 Ornithine cyclodeaminase/mu-crystallin family D5125_RS15375 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family D5125_RS15385 PF02770 Acyl-CoA dehydrogenase, middle domain D5125_RS15385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D5125_RS15385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D5125_RS15395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D5125_RS15395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D5125_RS15425 PF01256 Carbohydrate kinase D5125_RS15425 PF03853 YjeF-related protein N-terminus D5125_RS15430 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D5125_RS15435 PF11741 AMIN domain D5125_RS15435 PF01520 N-acetylmuramoyl-L-alanine amidase D5125_RS15450 PF00391 PEP-utilising enzyme, mobile domain D5125_RS15450 PF02896 PEP-utilising enzyme, TIM barrel domain D5125_RS15450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D5125_RS15455 PF01297 Zinc-uptake complex component A periplasmic D5125_RS15465 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system D5125_RS15470 PF00005 ABC transporter D5125_RS15475 PF00950 ABC 3 transport family D5125_RS15485 PF03621 MbtH-like protein D5125_RS15490 PF00873 AcrB/AcrD/AcrF family D5125_RS15495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D5125_RS15500 PF00072 Response regulator receiver domain D5125_RS15500 PF17149 Periplasmic sensor domain found in signal transduction proteins D5125_RS15500 PF00672 HAMP domain D5125_RS15500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS15500 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS15500 PF01627 Hpt domain D5125_RS15505 PF04255 Protein of unknown function (DUF433) D5125_RS15510 PF00005 ABC transporter D5125_RS15515 PF01061 ABC-2 type transporter D5125_RS15525 PF00128 Alpha amylase, catalytic domain D5125_RS15535 PF05116 Sucrose-6F-phosphate phosphohydrolase D5125_RS15535 PF05166 YcgL domain D5125_RS15540 PF00534 Glycosyl transferases group 1 D5125_RS15540 PF00862 Sucrose synthase D5125_RS15555 PF01103 Surface antigen D5125_RS15555 PF17243 POTRA domain TamA domain 1 D5125_RS15560 PF00285 Citrate synthase, C-terminal domain D5125_RS15570 PF00501 AMP-binding enzyme D5125_RS15570 PF13193 AMP-binding enzyme C-terminal domain D5125_RS15570 PF16177 Acetyl-coenzyme A synthetase N-terminus D5125_RS15575 PF00005 ABC transporter D5125_RS15575 PF00664 ABC transporter transmembrane region D5125_RS15585 PF01272 Transcription elongation factor, GreA/GreB, C-term D5125_RS15585 PF03449 Transcription elongation factor, N-terminal D5125_RS15590 PF00291 Pyridoxal-phosphate dependent enzyme D5125_RS15595 PF00483 Nucleotidyl transferase D5125_RS15600 PF00155 Aminotransferase class I and II D5125_RS15605 PF02153 Prephenate dehydrogenase D5125_RS15610 PF08323 Starch synthase catalytic domain D5125_RS15610 PF00534 Glycosyl transferases group 1 D5125_RS15615 PF04303 PrpF protein D5125_RS15620 PF00330 Aconitase family (aconitate hydratase) D5125_RS15620 PF00694 Aconitase C-terminal domain D5125_RS15625 PF00672 HAMP domain D5125_RS15625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS15630 PF12848 ABC transporter D5125_RS15630 PF16326 ABC transporter C-terminal domain D5125_RS15630 PF00005 ABC transporter D5125_RS15645 PF00092 von Willebrand factor type A domain D5125_RS15660 PF07728 AAA domain (dynein-related subfamily) D5125_RS15660 PF08406 CbbQ/NirQ/NorQ C-terminal D5125_RS15670 PF00510 Cytochrome c oxidase subunit III D5125_RS15675 PF00115 Cytochrome C and Quinol oxidase polypeptide I D5125_RS15680 PF00034 Cytochrome c D5125_RS15715 PF02374 Anion-transporting ATPase D5125_RS15715 PF17886 HSP20-like domain found in ArsA D5125_RS15725 PF00176 SNF2 family N-terminal domain D5125_RS15725 PF00271 Helicase conserved C-terminal domain D5125_RS15730 PF00488 MutS domain V D5125_RS15730 PF05188 MutS domain II D5125_RS15730 PF05192 MutS domain III D5125_RS15730 PF05190 MutS family domain IV D5125_RS15730 PF01624 MutS domain I D5125_RS15735 PF07733 Bacterial DNA polymerase III alpha NTPase domain D5125_RS15735 PF01336 OB-fold nucleic acid binding domain D5125_RS15735 PF02811 PHP domain D5125_RS15735 PF14579 Helix-hairpin-helix motif D5125_RS15735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D5125_RS15740 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D5125_RS15745 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5125_RS15750 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D5125_RS15750 PF00749 tRNA synthetases class I (E and Q), catalytic domain D5125_RS15765 PF09820 Predicted AAA-ATPase D5125_RS15765 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS15795 PF00072 Response regulator receiver domain D5125_RS15795 PF00486 Transcriptional regulatory protein, C terminal D5125_RS15800 PF07689 KaiB domain D5125_RS15800 PF00512 His Kinase A (phospho-acceptor) domain D5125_RS15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D5125_RS15810 PF08011 PD-(D/E)XK nuclease superfamily D5125_RS15810 PF09820 Predicted AAA-ATPase D5125_RS15815 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS15815 PF00563 EAL domain D5125_RS15815 PF03707 Bacterial signalling protein N terminal repeat D5125_RS15825 PF00072 Response regulator receiver domain D5125_RS15825 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS15840 PF16363 GDP-mannose 4,6 dehydratase D5125_RS15845 PF04321 RmlD substrate binding domain D5125_RS15850 PF00483 Nucleotidyl transferase D5125_RS15855 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D5125_RS15870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D5125_RS15870 PF05698 Bacterial trigger factor protein (TF) C-terminus D5125_RS15870 PF05697 Bacterial trigger factor protein (TF) D5125_RS15875 PF00574 Clp protease D5125_RS15880 PF07724 AAA domain (Cdc48 subfamily) D5125_RS15880 PF10431 C-terminal, D2-small domain, of ClpB protein D5125_RS15880 PF06689 ClpX C4-type zinc finger D5125_RS15885 PF02190 ATP-dependent protease La (LON) substrate-binding domain D5125_RS15885 PF00004 ATPase family associated with various cellular activities (AAA) D5125_RS15885 PF05362 Lon protease (S16) C-terminal proteolytic domain D5125_RS15890 PF00216 Bacterial DNA-binding protein D5125_RS15905 PF13145 PPIC-type PPIASE domain D5125_RS15910 PF13380 CoA binding domain D5125_RS15915 PF01618 MotA/TolQ/ExbB proton channel family D5125_RS15920 PF00691 OmpA family D5125_RS15920 PF13677 Membrane MotB of proton-channel complex MotA/MotB D5125_RS15925 PF04376 Arginine-tRNA-protein transferase, N terminus D5125_RS15925 PF04377 Arginine-tRNA-protein transferase, C terminus D5125_RS15930 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS15930 PF00563 EAL domain D5125_RS15930 PF03707 Bacterial signalling protein N terminal repeat D5125_RS15940 PF01479 S4 domain D5125_RS15945 PF00462 Glutaredoxin D5125_RS15950 PF11940 Domain of unknown function (DUF3458) Ig-like fold D5125_RS15950 PF01433 Peptidase family M1 domain D5125_RS15950 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D5125_RS15955 PF01618 MotA/TolQ/ExbB proton channel family D5125_RS15960 PF13677 Membrane MotB of proton-channel complex MotA/MotB D5125_RS15960 PF00691 OmpA family D5125_RS15970 PF00360 Phytochrome region D5125_RS15970 PF01590 GAF domain D5125_RS15970 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS15970 PF00563 EAL domain D5125_RS15975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D5125_RS15980 PF02224 Cytidylate kinase D5125_RS15985 PF00575 S1 RNA binding domain D5125_RS15990 PF00216 Bacterial DNA-binding protein D5125_RS16000 PF13649 Methyltransferase domain D5125_RS16005 PF08003 Protein of unknown function (DUF1698) D5125_RS16010 PF04715 Anthranilate synthase component I, N terminal region D5125_RS16010 PF00425 chorismate binding enzyme D5125_RS16015 PF00202 Aminotransferase class-III D5125_RS16025 PF00291 Pyridoxal-phosphate dependent enzyme D5125_RS16030 PF05958 tRNA (Uracil-5-)-methyltransferase D5125_RS16040 PF17969 L,D-transpeptidase C-terminal domain D5125_RS16040 PF03734 L,D-transpeptidase catalytic domain D5125_RS16050 PF00933 Glycosyl hydrolase family 3 N terminal domain D5125_RS16055 PF00156 Phosphoribosyl transferase domain D5125_RS16060 PF10417 C-terminal domain of 1-Cys peroxiredoxin D5125_RS16060 PF00578 AhpC/TSA family D5125_RS16065 PF01048 Phosphorylase superfamily D5125_RS16100 PF01435 Peptidase family M48 D5125_RS16120 PF01142 tRNA pseudouridine synthase D (TruD) D5125_RS16175 PF02542 YgbB family D5125_RS16180 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D5125_RS16185 PF04977 Septum formation initiator D5125_RS16190 PF00113 Enolase, C-terminal TIM barrel domain D5125_RS16190 PF03952 Enolase, N-terminal domain D5125_RS16195 PF00793 DAHP synthetase I family D5125_RS16200 PF00117 Glutamine amidotransferase class-I D5125_RS16200 PF06418 CTP synthase N-terminus D5125_RS16205 PF08443 RimK-like ATP-grasp domain D5125_RS16205 PF18030 RimK PreATP-grasp domain D5125_RS16210 PF00583 Acetyltransferase (GNAT) family D5125_RS16220 PF03840 Preprotein translocase SecG subunit D5125_RS16225 PF00121 Triosephosphate isomerase D5125_RS16240 PF00271 Helicase conserved C-terminal domain D5125_RS16240 PF04408 Helicase associated domain (HA2) D5125_RS16240 PF00270 DEAD/DEAH box helicase D5125_RS16240 PF08482 ATP-dependent helicase C-terminal D5125_RS16245 PF01053 Cys/Met metabolism PLP-dependent enzyme D5125_RS16250 PF01546 Peptidase family M20/M25/M40 D5125_RS16250 PF07687 Peptidase dimerisation domain D5125_RS16270 PF13181 Tetratricopeptide repeat D5125_RS16270 PF01435 Peptidase family M48 D5125_RS16295 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS16295 PF03707 Bacterial signalling protein N terminal repeat D5125_RS16295 PF00563 EAL domain D5125_RS16300 PF07689 KaiB domain D5125_RS16305 PF06745 KaiC D5125_RS16320 PF16078 2-oxoglutarate dehydrogenase N-terminus D5125_RS16320 PF00676 Dehydrogenase E1 component D5125_RS16320 PF16870 2-oxoglutarate dehydrogenase C-terminal D5125_RS16320 PF02779 Transketolase, pyrimidine binding domain D5125_RS16325 PF02817 e3 binding domain D5125_RS16325 PF00364 Biotin-requiring enzyme D5125_RS16325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D5125_RS16330 PF05683 Fumarase C-terminus D5125_RS16330 PF05681 Fumarate hydratase (Fumerase) D5125_RS16335 PF01475 Ferric uptake regulator family D5125_RS16340 PF04355 SmpA / OmlA family D5125_RS16345 PF00011 Hsp20/alpha crystallin family D5125_RS16350 PF00011 Hsp20/alpha crystallin family D5125_RS16355 PF01551 Peptidase family M23 D5125_RS16355 PF10145 Phage-related minor tail protein D5125_RS16355 PF01464 Transglycosylase SLT domain D5125_RS16360 PF02810 SEC-C motif D5125_RS16375 PF03649 Uncharacterised protein family (UPF0014) D5125_RS16380 PF00005 ABC transporter D5125_RS16385 PF02390 Putative methyltransferase D5125_RS16390 PF05690 Thiazole biosynthesis protein ThiG D5125_RS16400 PF00753 Metallo-beta-lactamase superfamily D5125_RS16415 PF12729 Four helix bundle sensory module for signal transduction D5125_RS16415 PF00672 HAMP domain D5125_RS16415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D5125_RS16420 PF02464 Competence-damaged protein D5125_RS16435 PF04279 Intracellular septation protein A D5125_RS16440 PF03795 YCII-related domain D5125_RS16445 PF00639 PPIC-type PPIASE domain D5125_RS16450 PF08331 Domain of unknown function (DUF1730) D5125_RS16465 PF11898 Domain of unknown function (DUF3418) D5125_RS16465 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D5125_RS16465 PF00271 Helicase conserved C-terminal domain D5125_RS16465 PF04408 Helicase associated domain (HA2) D5125_RS16465 PF00270 DEAD/DEAH box helicase D5125_RS16490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D5125_RS16490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D5125_RS16490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D5125_RS16490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D5125_RS16495 PF10411 Disulfide bond isomerase protein N-terminus D5125_RS16495 PF13098 Thioredoxin-like domain D5125_RS16500 PF04461 Protein of unknown function (DUF520) D5125_RS16505 PF00589 Phage integrase family D5125_RS16505 PF02899 Phage integrase, N-terminal SAM-like domain D5125_RS16510 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D5125_RS16510 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D5125_RS16515 PF03692 Putative zinc- or iron-chelating domain D5125_RS16525 PF02769 AIR synthase related protein, C-terminal domain D5125_RS16525 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D5125_RS16525 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D5125_RS16535 PF00106 short chain dehydrogenase D5125_RS16540 PF13380 CoA binding domain D5125_RS16540 PF00583 Acetyltransferase (GNAT) family D5125_RS16540 PF13607 Succinyl-CoA ligase like flavodoxin domain D5125_RS16545 PF00850 Histone deacetylase domain D5125_RS16560 PF00092 von Willebrand factor type A domain D5125_RS16570 PF08406 CbbQ/NirQ/NorQ C-terminal D5125_RS16570 PF07728 AAA domain (dynein-related subfamily) D5125_RS16575 PF00101 Ribulose bisphosphate carboxylase, small chain D5125_RS16580 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D5125_RS16580 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D5125_RS16590 PF00380 Ribosomal protein S9/S16 D5125_RS16595 PF00572 Ribosomal protein L13 D5125_RS16605 PF13183 4Fe-4S dicluster domain D5125_RS16605 PF02754 Cysteine-rich domain D5125_RS16610 PF03232 Ubiquinone biosynthesis protein COQ7 D5125_RS16615 PF02566 OsmC-like protein D5125_RS16620 PF00027 Cyclic nucleotide-binding domain D5125_RS16620 PF13545 Crp-like helix-turn-helix domain D5125_RS16630 PF00069 Protein kinase domain D5125_RS16630 PF03793 PASTA domain D5125_RS16635 PF01226 Formate/nitrite transporter D5125_RS16640 PF00355 Rieske [2Fe-2S] domain D5125_RS16645 PF04324 BFD-like [2Fe-2S] binding domain D5125_RS16645 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D5125_RS16645 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D5125_RS16645 PF07992 Pyridine nucleotide-disulphide oxidoreductase D5125_RS16645 PF18267 Rubredoxin NAD+ reductase C-terminal domain D5125_RS16650 PF13545 Crp-like helix-turn-helix domain D5125_RS16650 PF00027 Cyclic nucleotide-binding domain D5125_RS16660 PF05973 Phage derived protein Gp49-like (DUF891) D5125_RS16665 PF00218 Indole-3-glycerol phosphate synthase D5125_RS16670 PF12450 von Willebrand factor D5125_RS16670 PF00092 von Willebrand factor type A domain D5125_RS16670 PF12034 Domain of unknown function (DUF3520) D5125_RS16675 PF04542 Sigma-70 region 2 D5125_RS16675 PF08281 Sigma-70, region 4 D5125_RS16685 PF02885 Glycosyl transferase family, helical bundle domain D5125_RS16685 PF00591 Glycosyl transferase family, a/b domain D5125_RS16690 PF01381 Helix-turn-helix D5125_RS16695 PF00117 Glutamine amidotransferase class-I D5125_RS16700 PF01432 Peptidase family M3 D5125_RS16715 PF17764 3′ DNA-binding domain (3′BD) D5125_RS16715 PF00271 Helicase conserved C-terminal domain D5125_RS16715 PF00270 DEAD/DEAH box helicase D5125_RS16715 PF18074 Primosomal protein N C-terminal domain D5125_RS16715 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D5125_RS16720 PF05736 OprF membrane domain D5125_RS16720 PF00691 OmpA family D5125_RS16725 PF05746 DALR anticodon binding domain D5125_RS16725 PF00750 tRNA synthetases class I (R) D5125_RS16725 PF03485 Arginyl tRNA synthetase N terminal domain D5125_RS16740 PF03707 Bacterial signalling protein N terminal repeat D5125_RS16740 PF00990 Diguanylate cyclase, GGDEF domain D5125_RS16740 PF00563 EAL domain D5125_RS16745 PF00398 Ribosomal RNA adenine dimethylase D5125_RS16755 PF00342 Phosphoglucose isomerase D5125_RS16765 PF01479 S4 domain D5125_RS16765 PF00849 RNA pseudouridylate synthase D5125_RS16770 PF04079 Segregation and condensation complex subunit ScpB D5125_RS16775 PF07690 Major Facilitator Superfamily D5125_RS16785 PF02120 Flagellar hook-length control protein FliK D5125_RS16790 PF05173 Dihydrodipicolinate reductase, C-terminus D5125_RS16790 PF01113 Dihydrodipicolinate reductase, N-terminus D5125_RS16795 PF00684 DnaJ central domain D5125_RS16795 PF01556 DnaJ C terminal domain D5125_RS16795 PF00226 DnaJ domain D5125_RS16800 PF00012 Hsp70 protein D5125_RS16805 PF01025 GrpE D5125_RS16810 PF00753 Metallo-beta-lactamase superfamily D5125_RS16810 PF12706 Beta-lactamase superfamily domain D5125_RS16815 PF08668 HDOD domain D5125_RS16820 PF00004 ATPase family associated with various cellular activities (AAA) D5125_RS16820 PF17862 AAA+ lid domain D5125_RS16820 PF01434 Peptidase family M41 D5125_RS16820 PF06480 FtsH Extracellular D5125_RS16830 PF02599 Global regulator protein family D5125_RS16835 PF00696 Amino acid kinase family D5125_RS16835 PF01842 ACT domain D5125_RS16835 PF13840 ACT domain D5125_RS16850 PF01136 Peptidase family U32 D5125_RS16850 PF16325 Peptidase family U32 C-terminal domain D5125_RS16865 PF10609 NUBPL iron-transfer P-loop NTPase D5125_RS16870 PF09334 tRNA synthetases class I (M) D5125_RS16870 PF01588 Putative tRNA binding domain D5125_RS16875 PF02525 Flavodoxin-like fold D5125_RS16880 PF02254 TrkA-N domain D5125_RS16880 PF00999 Sodium/hydrogen exchanger family D5125_RS16885 PF01169 Uncharacterized protein family UPF0016