locus-tag	class	description
FOC79_00005	COG0444	Belongs to the ABC transporter superfamily
FOC79_00010	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC79_00015	COG0601	transmembrane transport
FOC79_00020	COG1862	Preprotein translocase
FOC79_00025	COG0343	queuine tRNA-ribosyltransferase activity
FOC79_00030	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC79_00035	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC79_00055	COG1940	carbohydrate kinase activity
FOC79_00065	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FOC79_00075	COG0204	Acyl-transferase
FOC79_00080	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FOC79_00110	COG0438	transferase activity, transferring glycosyl groups
FOC79_00130	COG0335	large ribosomal subunit rRNA binding
FOC79_00140	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
FOC79_00170	COG1837	Belongs to the UPF0109 family
FOC79_00175	COG0228	four-way junction DNA binding
FOC79_00215	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FOC79_00225	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FOC79_00230	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
FOC79_00245	COG0552	protein localization to endoplasmic reticulum
FOC79_00250	COG0561	phosphatase activity
FOC79_00255	COG1196	nuclear chromosome segregation
FOC79_00260	COG0571	ribonuclease III activity
FOC79_00285	COG4166	transmembrane transport
FOC79_00290	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC79_00295	COG0601	transmembrane transport
FOC79_00300	COG4608	Belongs to the ABC transporter superfamily
FOC79_00320	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FOC79_00325	COG1461	Dihydroxyacetone kinase
FOC79_00330	COG1302	Protein conserved in bacteria
FOC79_00335	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FOC79_00345	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FOC79_00350	COG1162	GTPase activity
FOC79_00355	COG2815	serine threonine protein kinase
FOC79_00355	COG0515	serine threonine protein kinase
FOC79_00360	COG0631	protein serine/threonine phosphatase activity
FOC79_00365	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FOC79_00365	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FOC79_00370	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FOC79_00375	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FOC79_00390	COG0706	membrane insertase activity
FOC79_00395	COG5002	protein histidine kinase activity
FOC79_00400	COG0745	RESPONSE REGULATOR receiver
FOC79_00415	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FOC79_00420	COG1426	Protein conserved in bacteria
FOC79_00425	COG0612	Peptidase, M16
FOC79_00450	COG1744	ABC transporter substrate-binding protein PnrA-like
FOC79_00460	COG4841	protein insertion into membrane
FOC79_00465	COG2197	response regulator
FOC79_00470	COG4585	Histidine kinase
FOC79_00480	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FOC79_00485	COG0572	uridine kinase
FOC79_00490	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FOC79_00505	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
FOC79_00510	COG4472	Bacterial protein of unknown function (DUF965)
FOC79_00515	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FOC79_00520	COG1597	lipid kinase activity
FOC79_00525	COG0561	phosphatase activity
FOC79_00545	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FOC79_00550	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
FOC79_00555	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FOC79_00565	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FOC79_00575	COG0556	nucleotide-excision repair
FOC79_00585	COG1466	dna polymerase III delta subunit
FOC79_00590	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
FOC79_00595	COG0509	glycine decarboxylation via glycine cleavage system
FOC79_00600	COG0772	Belongs to the SEDS family
FOC79_00615	COG1160	GTP binding
FOC79_00620	COG0539	negative regulation of cytoplasmic translation
FOC79_00625	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
FOC79_00635	COG1141	Ferredoxin
FOC79_00640	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
FOC79_00645	COG1187	pseudouridine synthase activity
FOC79_00650	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
FOC79_00670	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
FOC79_00680	COG2996	Protein conserved in bacteria
FOC79_00690	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FOC79_00700	COG0116	Belongs to the methyltransferase superfamily
FOC79_00710	COG3599	regulation of cell shape
FOC79_00735	COG0534	Mate efflux family protein
FOC79_00750	COG3716	PTS system mannose fructose sorbose family IID component
FOC79_00755	COG3715	PTS system
FOC79_00765	COG1074	ATP-dependent DNA helicase activity
FOC79_00770	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
FOC79_00775	COG2195	Cleaves the N-terminal amino acid of tripeptides
FOC79_00780	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FOC79_00785	COG2384	SAM-dependent methyltransferase
FOC79_00810	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FOC79_00815	COG0151	Belongs to the GarS family
FOC79_00825	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FOC79_00830	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
FOC79_00845	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FOC79_00850	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FOC79_00855	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FOC79_00860	COG1185	polyribonucleotide nucleotidyltransferase activity
FOC79_00865	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FOC79_00885	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FOC79_00885	COG1199	ATP-dependent helicase activity
FOC79_00890	COG0617	tRNA 3'-terminal CCA addition
FOC79_00905	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
FOC79_00920	COG0668	transmembrane transport
FOC79_00925	COG0517	IMP dehydrogenase activity
FOC79_00930	COG0622	Phosphoesterase
FOC79_00935	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
FOC79_00940	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
FOC79_00945	COG1394	ATPase activity, coupled to movement of substances
FOC79_00950	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
FOC79_00955	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
FOC79_00960	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
FOC79_00965	COG1527	subunit (C
FOC79_00975	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FOC79_00980	COG1269	ATP hydrolysis coupled proton transport
FOC79_00995	COG1316	TRANSCRIPTIONal
FOC79_01005	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FOC79_01010	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FOC79_01020	COG2309	aminopeptidase activity
FOC79_01025	COG0716	FMN binding
FOC79_01035	COG4485	Bacterial membrane protein, YfhO
FOC79_01040	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FOC79_01055	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
FOC79_01065	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
FOC79_01070	COG4109	DRTGG domain
FOC79_01080	COG1131	(ABC) transporter
FOC79_01090	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FOC79_01095	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FOC79_01105	COG0482	sulfurtransferase activity
FOC79_01115	COG1104	cysteine desulfurase activity
FOC79_01120	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FOC79_01130	COG1114	Component of the transport system for branched-chain amino acids
FOC79_01135	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
FOC79_01140	COG3599	regulation of cell shape
FOC79_01145	COG2302	S4 RNA-binding domain
FOC79_01180	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FOC79_01185	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FOC79_01190	COG0768	penicillin binding
FOC79_01200	COG0275	rRNA processing
FOC79_01205	COG2001	Belongs to the MraZ family
FOC79_01220	COG1077	Cell shape determining protein MreB Mrl
FOC79_01225	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FOC79_01240	COG1104	cysteine desulfurase activity
FOC79_01245	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
FOC79_01275	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FOC79_01280	COG0719	Fe-S assembly protein
FOC79_01300	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC79_01305	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FOC79_01315	COG0006	proline dipeptidase activity
FOC79_01320	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FOC79_01340	COG0557	exoribonuclease II activity
FOC79_01365	COG0148	phosphopyruvate hydratase activity
FOC79_01370	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
FOC79_01380	COG0126	phosphoglycerate kinase activity
FOC79_01390	COG2390	Transcriptional regulator
FOC79_01395	COG1854	S-ribosylhomocysteine lyase activity
FOC79_01410	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
FOC79_01415	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC79_01425	COG0446	pyridine nucleotide-disulphide oxidoreductase
FOC79_01430	COG1053	succinate dehydrogenase
FOC79_01440	COG3711	transcriptional antiterminator
FOC79_01445	COG0058	SHG alpha-glucan phosphorylase activity
FOC79_01450	COG1640	4-alpha-glucanotransferase
FOC79_01460	COG3425	synthase
FOC79_01470	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FOC79_01485	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
FOC79_01490	COG3557	Belongs to the UPF0374 family
FOC79_01495	COG1132	(ABC) transporter
FOC79_01510	COG1268	BioY protein
FOC79_01520	COG0628	permease
FOC79_01525	COG2706	6-phosphogluconolactonase activity
FOC79_01530	COG1968	undecaprenyl-diphosphatase activity
FOC79_01535	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC79_01535	COG1263	PTS System
FOC79_01535	COG2190	(PTS) system
FOC79_01540	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
FOC79_01545	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FOC79_01550	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
FOC79_01560	COG1573	uracil-dna glycosylase
FOC79_01580	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC79_01595	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
FOC79_01600	COG0395	ABC-type sugar transport system, permease component
FOC79_01615	COG1737	Transcriptional regulator
FOC79_01635	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
FOC79_01645	COG0009	L-threonylcarbamoyladenylate synthase
FOC79_01650	COG2890	protein-(glutamine-N5) methyltransferase activity
FOC79_01655	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
FOC79_01660	COG1435	thymidine kinase activity
FOC79_01665	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC79_01675	COG3442	glutamine amidotransferase
FOC79_01680	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FOC79_01685	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC79_01705	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FOC79_01710	COG1705	Flagellar rod assembly protein muramidase FlgJ
FOC79_01730	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
FOC79_01735	COG1418	mRNA catabolic process
FOC79_01750	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
FOC79_01755	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
FOC79_01780	COG1704	LemA family
FOC79_01800	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FOC79_01805	COG1177	transmembrane transport
FOC79_01815	COG3842	ATPase activity
FOC79_01825	COG0740	serine-type endopeptidase activity
FOC79_01830	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FOC79_01840	COG1323	Belongs to the UPF0348 family
FOC79_01845	COG2226	methyltransferase
FOC79_01850	COG0799	negative regulation of ribosome biogenesis
FOC79_01855	COG1713	HD superfamily hydrolase involved in NAD metabolism
FOC79_01860	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
FOC79_01870	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
FOC79_01875	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
FOC79_01885	COG2084	Dehydrogenase
FOC79_01890	COG0438	transferase activity, transferring glycosyl groups
FOC79_01900	COG0242	peptide deformylase activity
FOC79_01905	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FOC79_01910	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
FOC79_01920	COG0497	DNA recombination
FOC79_01925	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
FOC79_01930	COG0142	geranyltranstransferase activity
FOC79_01935	COG1722	exodeoxyribonuclease VII activity
FOC79_01940	COG1570	exodeoxyribonuclease VII activity
FOC79_01945	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FOC79_01950	COG2239	Acts as a magnesium transporter
FOC79_01960	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC79_01960	COG0072	phenylalanine-tRNA ligase activity
FOC79_01965	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
FOC79_01975	COG2217	Heavy metal translocating P-type atpase
FOC79_01990	COG0395	ABC-type sugar transport system, permease component
FOC79_01995	COG1175	transmembrane transport
FOC79_02005	COG1609	Transcriptional regulator
FOC79_02020	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FOC79_02025	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC79_02030	COG1187	pseudouridine synthase activity
FOC79_02035	COG2244	polysaccharide biosynthetic process
FOC79_02040	COG0495	leucyl-tRNA aminoacylation
FOC79_02045	COG1388	LysM domain
FOC79_02045	COG1705	Flagellar rod assembly protein muramidase FlgJ
FOC79_02050	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
FOC79_02055	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FOC79_02080	COG0596	Alpha beta hydrolase
FOC79_02105	COG0459	protein refolding
FOC79_02120	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FOC79_02135	COG1686	Belongs to the peptidase S11 family
FOC79_02145	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FOC79_02150	COG0154	amidase activity
FOC79_02155	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FOC79_02165	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FOC79_02175	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FOC79_02180	COG1045	serine acetyltransferase
FOC79_02205	COG3250	beta-galactosidase activity
FOC79_02215	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
FOC79_02240	COG3414	Phosphotransferase system galactitol-specific IIB component
FOC79_02245	COG3775	system Galactitol-specific IIC component
FOC79_02250	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC79_02250	COG3711	transcriptional antiterminator
FOC79_02255	COG3711	transcriptional antiterminator
FOC79_02255	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC79_02280	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
FOC79_02285	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
FOC79_02290	COG0436	Aminotransferase
FOC79_02295	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FOC79_02295	COG1215	transferase activity, transferring glycosyl groups
FOC79_02300	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FOC79_02305	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FOC79_02310	COG1164	Oligoendopeptidase f
FOC79_02320	COG0235	Class ii aldolase
FOC79_02325	COG3775	system Galactitol-specific IIC component
FOC79_02330	COG3414	Phosphotransferase system galactitol-specific IIB component
FOC79_02355	COG1819	glycosyl
FOC79_02360	COG4989	oxidoreductase activity
FOC79_02370	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC79_02375	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC79_02380	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC79_02430	COG0395	ABC-type sugar transport system, permease component
FOC79_02435	COG1175	transmembrane transport
FOC79_02445	COG4977	sequence-specific DNA binding
FOC79_02445	COG1917	Cupin 2, conserved barrel domain protein
FOC79_02455	COG0531	amino acid
FOC79_02470	COG0673	inositol 2-dehydrogenase activity
FOC79_02495	COG1253	flavin adenine dinucleotide binding
FOC79_02505	COG0564	pseudouridine synthase activity
FOC79_02515	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
FOC79_02520	COG2357	RelA SpoT domain protein
FOC79_02525	COG2226	methyltransferase
FOC79_02530	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FOC79_02545	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FOC79_02550	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FOC79_02555	COG1316	TRANSCRIPTIONal
FOC79_02565	COG4753	response regulator
FOC79_02565	COG2207	Transcriptional regulator
FOC79_02570	COG2972	Histidine kinase
FOC79_02590	COG0395	ABC-type sugar transport system, permease component
FOC79_02595	COG1175	transmembrane transport
FOC79_02605	COG2723	6-phospho-beta-galactosidase activity
FOC79_02615	COG1846	Transcriptional regulator
FOC79_02620	COG1733	regulation of RNA biosynthetic process
FOC79_02625	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
FOC79_02645	COG0463	Glycosyl transferase, family 2
FOC79_02650	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
FOC79_02670	COG0626	cystathionine gamma-synthase activity
FOC79_02675	COG1181	Belongs to the D-alanine--D-alanine ligase family
FOC79_02685	COG1704	LemA family
FOC79_02690	COG0254	rRNA binding
FOC79_02695	COG1607	acyl-coa hydrolase
FOC79_02700	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FOC79_02725	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
FOC79_02730	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
FOC79_02735	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FOC79_02740	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FOC79_02745	COG1121	(ABC) transporter
FOC79_02770	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FOC79_02775	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FOC79_02780	COG1464	Belongs to the NlpA lipoprotein family
FOC79_02790	COG2207	Transcriptional regulator
FOC79_02790	COG3708	Transcriptional regulator
FOC79_02810	COG1131	(ABC) transporter
FOC79_02835	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
FOC79_02840	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FOC79_02845	COG2081	HI0933 family
FOC79_02850	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FOC79_02855	COG0704	Plays a role in the regulation of phosphate uptake
FOC79_02860	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FOC79_02870	COG0573	inorganic phosphate transmembrane transporter activity
FOC79_02880	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC79_02885	COG0110	maltose O-acetyltransferase activity
FOC79_02895	COG1051	belongs to the nudix hydrolase family
FOC79_02905	COG0220	tRNA (guanine-N7-)-methyltransferase activity
FOC79_02920	COG2177	Part of the ABC transporter FtsEX involved in
FOC79_02925	COG2884	Cell division ATP-binding protein ftsE
FOC79_02955	COG1131	(ABC) transporter
FOC79_02975	COG0653	protein targeting
FOC79_02990	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
FOC79_03015	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
FOC79_03035	COG1116	anion transmembrane transporter activity
FOC79_03045	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC79_03210	COG0517	IMP dehydrogenase activity
FOC79_03225	COG4177	L-phenylalanine transmembrane transporter activity
FOC79_03245	COG1621	beta-fructofuranosidase activity
FOC79_03255	COG1609	Transcriptional regulator
FOC79_03275	COG1131	(ABC) transporter
FOC79_03280	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FOC79_03285	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC79_03290	COG4708	membrane
FOC79_03300	COG0488	(ABC) transporter
FOC79_03320	COG0765	amino acid transport
FOC79_03330	COG4608	Belongs to the ABC transporter superfamily
FOC79_03335	COG0444	Belongs to the ABC transporter superfamily
FOC79_03340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC79_03345	COG0601	transmembrane transport
FOC79_03350	COG4166	transmembrane transport
FOC79_03355	COG0101	tRNA pseudouridine synthase activity
FOC79_03365	COG1122	ATPase activity
FOC79_03370	COG1122	ATPase activity
FOC79_03375	COG0203	ribosomal protein L17
FOC79_03380	COG0202	RNA polymerase activity
FOC79_03390	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FOC79_03395	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FOC79_03420	COG1841	ribosomal large subunit assembly
FOC79_03425	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FOC79_03430	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FOC79_03435	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
FOC79_03440	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FOC79_03450	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FOC79_03460	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FOC79_03465	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FOC79_03470	COG0255	Belongs to the universal ribosomal protein uL29 family
FOC79_03480	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FOC79_03490	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
FOC79_03495	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FOC79_03500	COG0089	rRNA binding
FOC79_03510	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FOC79_03525	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
FOC79_03530	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FOC79_03535	COG0084	hydrolase, TatD family'
FOC79_03540	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC79_03540	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC79_03570	COG0395	ABC-type sugar transport system, permease component
FOC79_03580	COG3842	ATPase activity
FOC79_03595	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC79_03600	COG5002	protein histidine kinase activity
FOC79_03600	COG3850	Histidine kinase
FOC79_03605	COG0745	RESPONSE REGULATOR receiver
FOC79_03610	COG0629	single-stranded DNA binding
FOC79_03615	COG1481	regulation of sporulation
FOC79_03625	COG1660	Displays ATPase and GTPase activities
FOC79_03630	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FOC79_03635	COG0492	ferredoxin-NADP+ reductase activity
FOC79_03640	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
FOC79_03645	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
FOC79_03650	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
FOC79_03675	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FOC79_03680	COG2818	Glycosylase
FOC79_03695	COG2827	Endonuclease containing a URI domain
FOC79_03700	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FOC79_03715	COG3870	Protein conserved in bacteria
FOC79_03720	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FOC79_03730	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
FOC79_03735	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FOC79_03740	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
FOC79_03755	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC79_03765	COG0590	tRNA wobble adenosine to inosine editing
FOC79_03785	COG0737	Belongs to the 5'-nucleotidase family
FOC79_03825	COG3052	prosthetic group binding
FOC79_03845	COG0511	ligase activity, forming carbon-carbon bonds
FOC79_03855	COG2851	Citrate transporter
FOC79_03875	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
FOC79_03880	COG0789	Transcriptional regulator
FOC79_03895	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FOC79_03900	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
FOC79_03915	COG1464	Belongs to the NlpA lipoprotein family
FOC79_03920	COG1473	amidohydrolase
FOC79_03935	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FOC79_03940	COG0436	Aminotransferase
FOC79_03945	COG1942	4-Oxalocrotonate Tautomerase
FOC79_03950	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC79_03955	COG1970	mechanosensitive ion channel activity
FOC79_03985	COG1686	Belongs to the peptidase S11 family
FOC79_03990	COG5002	protein histidine kinase activity
FOC79_04000	COG0516	GMP reductase activity
FOC79_04000	COG0517	IMP dehydrogenase activity
FOC79_04010	COG0012	GTP binding
FOC79_04015	COG4481	Protein conserved in bacteria
FOC79_04020	COG1475	DNA binding
FOC79_04025	COG1192	Involved in chromosome partitioning
FOC79_04030	COG0357	Ribosomal RNA small subunit methyltransferase G
FOC79_04035	COG0359	binds to the 23S rRNA
FOC79_04050	COG0629	single-stranded DNA binding
FOC79_04055	COG0360	Binds together with S18 to 16S ribosomal RNA
FOC79_04070	COG3279	Response regulator of the LytR AlgR family
FOC79_04085	COG0187	DNA topoisomerase II activity
FOC79_04095	COG2501	S4 domain
FOC79_04100	COG0592	DNA-directed DNA polymerase activity
FOC79_04105	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FOC79_04115	COG0778	Nitroreductase
FOC79_04125	COG1132	(ABC) transporter
FOC79_04130	COG3443	Belongs to the bacterial solute-binding protein 9 family
FOC79_04135	COG0594	ribonuclease P activity
FOC79_04140	COG0706	membrane insertase activity
FOC79_04150	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC79_04150	COG1263	PTS System
FOC79_04155	COG0366	Alpha amylase catalytic
FOC79_04165	COG2188	Transcriptional regulator
FOC79_04170	COG0445	tRNA wobble uridine modification
FOC79_04175	COG1051	belongs to the nudix hydrolase family
FOC79_04180	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FOC79_04185	COG0305	Participates in initiation and elongation during chromosome replication
FOC79_04195	COG3842	ATPase activity
FOC79_04200	COG0756	dUTP diphosphatase activity
FOC79_04210	COG4956	integral membrane protein (PIN domain superfamily)
FOC79_04215	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FOC79_04230	COG0215	cysteine-tRNA ligase activity
FOC79_04235	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
FOC79_04240	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FOC79_04245	COG3688	RNA-binding protein containing a PIN domain
FOC79_04255	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FOC79_04260	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FOC79_04265	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FOC79_04270	COG0250	Participates in transcription elongation, termination and antitermination
FOC79_04280	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
FOC79_04285	COG0081	regulation of translation
FOC79_04290	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FOC79_04295	COG0222	ribosome binding
FOC79_04300	COG1078	dGTPase activity
FOC79_04305	COG0095	Lipoate-protein ligase
FOC79_04315	COG3343	RNA polymerase activity
FOC79_04320	COG0504	CTP synthase activity
FOC79_04325	COG0191	fructose-bisphosphate aldolase activity
FOC79_04330	COG2755	lipolytic protein G-D-S-L family
FOC79_04330	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FOC79_04355	COG0561	phosphatase activity
FOC79_04360	COG1482	cell wall glycoprotein biosynthetic process
FOC79_04365	COG2813	Specifically methylates the guanine in position
FOC79_04370	COG3583	domain protein
FOC79_04375	COG3583	domain protein
FOC79_04380	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC79_04390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FOC79_04400	COG2217	Heavy metal translocating P-type atpase
FOC79_04405	COG0640	Transcriptional regulator
FOC79_04410	COG0167	dihydroorotate dehydrogenase activity
FOC79_04425	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FOC79_04435	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
FOC79_04450	COG3842	ATPase activity
FOC79_04455	COG1178	ABC-type Fe3 transport system permease component
FOC79_04465	COG1285	pathogenesis
FOC79_04480	COG0494	nUDIX hydrolase
FOC79_04490	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FOC79_04495	COG0049	tRNA binding
FOC79_04500	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
FOC79_04505	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FOC79_04515	COG1131	(ABC) transporter
FOC79_04520	COG1349	DNA-binding transcription factor activity
FOC79_04525	COG1105	Belongs to the carbohydrate kinase PfkB family
FOC79_04530	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FOC79_04530	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FOC79_04530	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC79_04535	COG0039	L-malate dehydrogenase activity
FOC79_04540	COG0193	aminoacyl-tRNA hydrolase activity
FOC79_04545	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FOC79_04550	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
FOC79_04560	COG1098	S1 RNA binding domain
FOC79_04565	COG0037	tRNA processing
FOC79_04575	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FOC79_04580	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
FOC79_04585	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FOC79_04605	COG1129	ABC transporter
FOC79_04625	COG2972	Histidine kinase
FOC79_04645	COG0745	RESPONSE REGULATOR receiver
FOC79_04650	COG5002	protein histidine kinase activity
FOC79_04655	COG1363	Peptidase, m42
FOC79_04660	COG1234	tRNA 3'-trailer cleavage
FOC79_04665	COG0095	Lipoate-protein ligase
FOC79_04755	COG1882	Formate acetyltransferase
FOC79_04760	COG2207	Transcriptional regulator
FOC79_04760	COG1917	Cupin 2, conserved barrel domain protein
FOC79_04770	COG1175	transmembrane transport
FOC79_04775	COG0395	ABC-type sugar transport system, permease component
FOC79_04780	COG5426	von Willebrand factor, type A
FOC79_04790	COG1940	carbohydrate kinase activity
FOC79_04800	COG2222	sugar isomerase
FOC79_04815	COG1393	Belongs to the ArsC family
FOC79_04825	COG1266	CAAX protease self-immunity
FOC79_04830	COG0640	Transcriptional regulator
FOC79_04835	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC79_04845	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FOC79_04850	COG3639	organic phosphonate transmembrane transporter activity
FOC79_04865	COG0569	domain protein
FOC79_04870	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FOC79_04895	COG1522	sequence-specific DNA binding
FOC79_04900	COG0436	Aminotransferase
FOC79_04905	COG1164	Oligoendopeptidase f
FOC79_04910	COG0737	Belongs to the 5'-nucleotidase family
FOC79_04920	COG2252	PERMEase
FOC79_04930	COG2183	response to ionizing radiation
FOC79_04935	COG1215	transferase activity, transferring glycosyl groups
FOC79_04940	COG0217	transcriptional regulatory protein
FOC79_04945	COG2197	response regulator
FOC79_04960	COG1131	(ABC) transporter
FOC79_04965	COG2738	Putative neutral zinc metallopeptidase
FOC79_04970	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FOC79_04975	COG1739	Uncharacterized protein family UPF0029
FOC79_04980	COG1307	EDD domain protein, DegV family
FOC79_04985	COG1072	(Pantothenic acid kinase))
FOC79_05010	COG0366	Alpha amylase catalytic
FOC79_05020	COG0519	Catalyzes the synthesis of GMP from XMP
FOC79_05020	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FOC79_05065	COG1523	belongs to the glycosyl hydrolase 13 family
FOC79_05070	COG4464	protein tyrosine phosphatase activity
FOC79_05090	COG3475	LICD family
FOC79_05100	COG0463	Glycosyl transferase, family 2
FOC79_05115	COG2244	polysaccharide biosynthetic process
FOC79_05125	COG2843	Capsule synthesis protein
FOC79_05130	COG1316	TRANSCRIPTIONal
FOC79_05135	COG0562	UDP-galactopyranose mutase
FOC79_05145	COG2226	methyltransferase
FOC79_05155	COG0602	queuosine metabolic process
FOC79_05175	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FOC79_05190	COG1132	(ABC) transporter
FOC79_05200	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC79_05200	COG1263	PTS System
FOC79_05205	COG1214	PFAM Peptidase M22, glycoprotease
FOC79_05215	COG0456	acetyltransferase
FOC79_05225	COG0488	(ABC) transporter
FOC79_05250	COG0383	alpha-mannosidase activity
FOC79_05265	COG0180	Tryptophanyl-tRNA synthetase
FOC79_05270	COG1393	Belongs to the ArsC family
FOC79_05275	COG4862	establishment of competence for transformation
FOC79_05280	COG0433	COG0433 Predicted ATPase
FOC79_05285	COG4989	oxidoreductase activity
FOC79_05290	COG0561	phosphatase activity
FOC79_05310	COG0765	amino acid transport
FOC79_05320	COG3976	FMN-binding domain protein
FOC79_05320	COG1053	succinate dehydrogenase
FOC79_05325	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FOC79_05415	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FOC79_05415	COG0456	acetyltransferase
FOC79_05445	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
FOC79_05455	COG0656	L-ascorbic acid biosynthetic process
FOC79_05475	COG3326	Membrane
FOC79_05480	COG0371	Dehydrogenase
FOC79_05485	COG4470	Protein conserved in bacteria
FOC79_05490	COG0647	UMP catabolic process
FOC79_05500	COG1764	response to oxidative stress
FOC79_05505	COG0492	ferredoxin-NADP+ reductase activity
FOC79_05510	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
FOC79_05520	COG0539	negative regulation of cytoplasmic translation
FOC79_05525	COG0166	Belongs to the GPI family
FOC79_05650	COG1132	(ABC) transporter
FOC79_05655	COG1132	(ABC) transporter
FOC79_05660	COG2357	RelA SpoT domain protein
FOC79_05665	COG0745	RESPONSE REGULATOR receiver
FOC79_05690	COG0431	NADPH-dependent FMN reductase
FOC79_05690	COG3976	FMN-binding domain protein
FOC79_05690	COG1053	succinate dehydrogenase
FOC79_05695	COG2169	Transcriptional regulator
FOC79_05705	COG1979	alcohol dehydrogenase
FOC79_05740	COG2207	Transcriptional regulator
FOC79_05760	COG3250	beta-galactosidase activity
FOC79_05775	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC79_05785	COG3037	sugar-specific permease SgaT UlaA
FOC79_05860	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC79_05870	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC79_05880	COG1175	transmembrane transport
FOC79_05885	COG0395	ABC-type sugar transport system, permease component
FOC79_05890	COG1609	Transcriptional regulator
FOC79_05900	COG0527	aspartate kinase activity
FOC79_05905	COG0460	homoserine dehydrogenase
FOC79_05910	COG0083	homoserine kinase activity
FOC79_05945	COG0745	RESPONSE REGULATOR receiver
FOC79_05975	COG3119	arylsulfatase activity
FOC79_05980	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FOC79_06000	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
FOC79_06025	COG0561	phosphatase activity
FOC79_06035	COG0745	RESPONSE REGULATOR receiver
FOC79_06040	COG5002	protein histidine kinase activity
FOC79_06085	COG5002	protein histidine kinase activity
FOC79_06095	COG0574	Belongs to the PEP-utilizing enzyme family
FOC79_06095	COG3848	Pyruvate phosphate dikinase
FOC79_06100	COG1183	phosphatidylcholine synthase activity
FOC79_06105	COG0688	phosphatidylethanolamine metabolic process
FOC79_06115	COG3848	Pyruvate phosphate dikinase
FOC79_06115	COG0574	Belongs to the PEP-utilizing enzyme family
FOC79_06130	COG1523	belongs to the glycosyl hydrolase 13 family
FOC79_06140	COG1363	Peptidase, m42
FOC79_06145	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC79_06155	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FOC79_06160	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FOC79_06160	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FOC79_06170	COG0237	dephospho-CoA kinase activity
FOC79_06185	COG1484	DNA-dependent DNA replication
FOC79_06200	COG1609	Transcriptional regulator
FOC79_06205	COG3764	Sortase (surface protein transpeptidase)
FOC79_06215	COG1780	Probably involved in ribonucleotide reductase function
FOC79_06220	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FOC79_06225	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FOC79_06235	COG1028	Short-chain dehydrogenase reductase Sdr
FOC79_06250	COG0235	Class ii aldolase
FOC79_06260	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC79_06270	COG1129	ABC transporter
FOC79_06275	COG1172	Belongs to the binding-protein-dependent transport system permease family
FOC79_06285	COG1070	Carbohydrate kinase
FOC79_06290	COG4154	Belongs to the RbsD FucU family
FOC79_06295	COG1454	alcohol dehydrogenase
FOC79_06300	COG1464	Belongs to the NlpA lipoprotein family
FOC79_06305	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FOC79_06315	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FOC79_06320	COG4667	esterase of the alpha-beta hydrolase superfamily
FOC79_06385	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FOC79_06390	COG1696	Membrane protein involved in D-alanine export
FOC79_06400	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
FOC79_06405	COG3590	peptidase
FOC79_06425	COG2514	catechol 2,3-dioxygenase activity
FOC79_06440	COG1187	pseudouridine synthase activity
FOC79_06445	COG1252	NADH dehydrogenase
FOC79_06450	COG0142	geranyltranstransferase activity
FOC79_06455	COG4939	FMN-binding domain protein
FOC79_06460	COG1477	protein flavinylation
FOC79_06470	COG2378	regulation of single-species biofilm formation
FOC79_06515	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FOC79_06525	COG0577	efflux transmembrane transporter activity
FOC79_06525	COG1136	(ABC) transporter
FOC79_06530	COG0513	Belongs to the DEAD box helicase family
FOC79_06535	COG0736	holo-[acyl-carrier-protein] synthase activity
FOC79_06545	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC79_06595	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
FOC79_06595	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FOC79_06610	COG0802	atpase or kinase
FOC79_06620	COG0812	UDP-N-acetylmuramate dehydrogenase activity
FOC79_06640	COG0280	phosphate acetyltransferase
FOC79_06665	COG1687	branched-chain amino acid
FOC79_06670	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
FOC79_06685	COG3237	CsbD-like
FOC79_06690	COG0488	(ABC) transporter
FOC79_06705	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC79_06720	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC79_06735	COG1363	Peptidase, m42
FOC79_06740	COG1446	asparaginase
FOC79_06750	COG3142	Participates in the control of copper homeostasis
FOC79_06760	COG2195	Cleaves the N-terminal amino acid of tripeptides
FOC79_06770	COG1132	(ABC) transporter
FOC79_06775	COG1132	(ABC) transporter
FOC79_06785	COG0708	Exodeoxyribonuclease III
FOC79_06795	COG2217	Heavy metal translocating P-type atpase
FOC79_06835	COG1363	Peptidase, m42
FOC79_06865	COG1263	PTS System
FOC79_06865	COG2190	(PTS) system
FOC79_06865	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC79_06870	COG0596	Alpha beta hydrolase
FOC79_06880	COG0232	Belongs to the dGTPase family. Type 2 subfamily
FOC79_06895	COG1136	(ABC) transporter
FOC79_06900	COG1136	(ABC) transporter
FOC79_06900	COG0577	efflux transmembrane transporter activity
FOC79_06905	COG0745	RESPONSE REGULATOR receiver
FOC79_06910	COG5002	protein histidine kinase activity
FOC79_06960	COG0745	RESPONSE REGULATOR receiver
FOC79_06965	COG5002	protein histidine kinase activity
FOC79_06980	COG1131	(ABC) transporter
FOC79_06995	COG1132	(ABC) transporter
FOC79_07000	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC79_07010	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC79_07025	COG0561	phosphatase activity
FOC79_07075	COG2217	Heavy metal translocating P-type atpase
FOC79_07085	COG0783	Belongs to the Dps family
FOC79_07095	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
FOC79_07100	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
FOC79_07120	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
FOC79_07140	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FOC79_07155	COG0640	Transcriptional regulator
FOC79_07175	COG0443	Heat shock 70 kDa protein
FOC79_07190	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC79_07195	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FOC79_07200	COG2070	2-Nitropropane dioxygenase
FOC79_07205	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FOC79_07215	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FOC79_07225	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FOC79_07230	COG0439	Biotin carboxylase
FOC79_07235	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FOC79_07240	COG0825	malonyl-CoA metabolic process
FOC79_07245	COG4166	transmembrane transport
FOC79_07335	COG0577	efflux transmembrane transporter activity
FOC79_07335	COG1136	(ABC) transporter
FOC79_07340	COG0577	efflux transmembrane transporter activity
FOC79_07340	COG1136	(ABC) transporter
FOC79_07385	COG2261	transglycosylase associated protein
FOC79_07415	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
FOC79_07425	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FOC79_07440	COG1011	Hydrolase
FOC79_07450	COG0386	Belongs to the glutathione peroxidase family
FOC79_07475	COG1760	l-serine dehydratase
FOC79_07480	COG1760	l-serine dehydratase
FOC79_07490	COG2137	regulation of response to DNA damage stimulus
FOC79_07495	COG3679	Belongs to the UPF0342 family
FOC79_07500	COG0420	3'-5' exonuclease activity
FOC79_07505	COG4717	serine-type aminopeptidase activity
FOC79_07510	COG3481	metal-dependent phosphohydrolase, HD sub domain
FOC79_07560	COG2182	Extracellular solute-binding protein
FOC79_07565	COG1175	transmembrane transport
FOC79_07570	COG3833	ABC-type maltose transport systems, permease component
FOC79_07580	COG1671	Belongs to the UPF0178 family
FOC79_07585	COG1349	DNA-binding transcription factor activity
FOC79_07615	COG3623	hexulose-6-phosphate isomerase
FOC79_07640	COG0537	adenosine 5'-monophosphoramidase activity
FOC79_07660	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FOC79_07695	COG0346	lactoylglutathione lyase activity
FOC79_07700	COG0295	cytidine deaminase activity
FOC79_07715	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
FOC79_07720	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
FOC79_07725	COG0297	glycogen (starch) synthase activity
FOC79_07730	COG0058	SHG alpha-glucan phosphorylase activity
FOC79_07740	COG0133	tryptophan synthase activity
FOC79_07750	COG0577	efflux transmembrane transporter activity
FOC79_07755	COG1136	(ABC) transporter
FOC79_07760	COG5002	protein histidine kinase activity
FOC79_07765	COG0745	RESPONSE REGULATOR receiver
FOC79_07770	COG1278	Cold shock
FOC79_07775	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
FOC79_07785	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FOC79_07790	COG2190	(PTS) system
FOC79_07790	COG1263	PTS System
FOC79_07790	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC79_07830	COG3853	Toxic anion resistance protein (TelA)
FOC79_07840	COG0494	nUDIX hydrolase
FOC79_07855	COG0519	Catalyzes the synthesis of GMP from XMP
FOC79_07860	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FOC79_07865	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FOC79_07880	COG0697	spore germination
FOC79_07895	COG1193	negative regulation of DNA recombination
FOC79_07900	COG3118	belongs to the thioredoxin family
FOC79_07905	COG0356	it plays a direct role in the translocation of protons across the membrane
FOC79_07910	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FOC79_07925	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
FOC79_07935	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
FOC79_07940	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FOC79_07945	COG1285	pathogenesis
FOC79_07955	COG0525	valine-tRNA ligase activity
FOC79_07960	COG0285	dihydrofolate synthase activity
FOC79_07965	COG1278	Cold shock
FOC79_07970	COG2003	Belongs to the UPF0758 family
FOC79_07975	COG1077	Cell shape determining protein MreB Mrl
FOC79_07995	COG1125	glycine betaine transport
FOC79_07995	COG0517	IMP dehydrogenase activity
FOC79_08010	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FOC79_08020	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FOC79_08025	COG0772	Belongs to the SEDS family
FOC79_08030	COG4471	UPF0298 protein
FOC79_08035	COG0742	ribosomal rna small subunit methyltransferase
FOC79_08040	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FOC79_08045	COG1692	metallophosphoesterase
FOC79_08050	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
FOC79_08065	COG0632	four-way junction helicase activity
FOC79_08070	COG2255	four-way junction helicase activity
FOC79_08075	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
FOC79_08090	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
FOC79_08095	COG0018	arginyl-trna synthetase
FOC79_08100	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FOC79_08110	COG0534	Mate efflux family protein
FOC79_08120	COG0513	Belongs to the DEAD box helicase family
FOC79_08125	COG1940	carbohydrate kinase activity
FOC79_08135	COG1132	(ABC) transporter
FOC79_08140	COG1132	(ABC) transporter
FOC79_08150	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC79_08165	COG0024	Methionine aminopeptidase
FOC79_08170	COG1674	ftsk spoiiie
FOC79_08180	COG0513	Belongs to the DEAD box helicase family
FOC79_08185	COG1609	Transcriptional regulator
FOC79_08205	COG0587	DNA-directed DNA polymerase activity
FOC79_08220	COG1555	photosystem II stabilization
FOC79_08235	COG4152	abc transporter atp-binding protein
FOC79_08240	COG1668	transmembrane transport
FOC79_08250	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC79_08255	COG3331	DNA recombination
FOC79_08260	COG0785	Cytochrome C biogenesis protein
FOC79_08265	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC79_08275	COG0544	peptidyl-prolyl cis-trans isomerase activity
FOC79_08280	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
FOC79_08285	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FOC79_08290	COG2270	Major facilitator Superfamily
FOC79_08295	COG0358	DNA primase activity
FOC79_08295	COG0305	Participates in initiation and elongation during chromosome replication
FOC79_08300	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FOC79_08305	COG0752	glycyl-tRNA synthetase alpha subunit
FOC79_08310	COG0751	glycine-tRNA ligase activity
FOC79_08320	COG2755	lipolytic protein G-D-S-L family
FOC79_08320	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FOC79_08325	COG1234	tRNA 3'-trailer cleavage
FOC79_08330	COG1028	Short-chain dehydrogenase reductase Sdr
FOC79_08340	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
FOC79_08340	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FOC79_08345	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FOC79_08350	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FOC79_08360	COG3763	UPF0154 protein
FOC79_08370	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC79_08375	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FOC79_08380	COG4589	Belongs to the CDS family
FOC79_08385	COG0750	zinc metalloprotease
FOC79_08390	COG2176	DNA-directed DNA polymerase activity
FOC79_08415	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FOC79_08420	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC79_08420	COG3103	Sh3 type 3 domain protein
FOC79_08420	COG4991	sh3 domain protein
FOC79_08425	COG0124	histidyl-tRNA synthetase
FOC79_08430	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FOC79_08435	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
FOC79_08440	COG0735	belongs to the Fur family
FOC79_08450	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
FOC79_08455	COG0251	oxidation-reduction process
FOC79_08460	COG1610	YqeY-like protein
FOC79_08465	COG1702	phosphate starvation-inducible protein PhoH
FOC79_08475	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
FOC79_08480	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
FOC79_08485	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FOC79_08490	COG1381	Involved in DNA repair and RecF pathway recombination
FOC79_08500	COG1216	Glycosyl transferase, family 2
FOC79_08500	COG1442	glycosyl transferase family 8
FOC79_08505	COG3475	LICD family
FOC79_08530	COG0564	pseudouridine synthase activity
FOC79_08550	COG0561	phosphatase activity
FOC79_08555	COG2151	metal-sulfur cluster biosynthetic enzyme
FOC79_08560	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC79_08565	COG0542	response to heat
FOC79_08570	COG0628	permease
FOC79_08585	COG4864	UPF0365 protein
FOC79_08600	COG0318	PFAM AMP-dependent synthetase and ligase
FOC79_08605	COG0052	Belongs to the universal ribosomal protein uS2 family
FOC79_08610	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
FOC79_08615	COG0528	UMP kinase activity
FOC79_08620	COG0233	cytoplasmic translational termination
FOC79_08630	COG0779	Required for maturation of 30S ribosomal subunits
FOC79_08635	COG0195	Participates in both transcription termination and antitermination
FOC79_08640	COG2740	Nucleic-acid-binding protein implicated in transcription termination
FOC79_08655	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
FOC79_08660	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
FOC79_08665	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
FOC79_08670	COG0196	riboflavin kinase activity
FOC79_08675	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FOC79_08680	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC79_08685	COG1420	regulation of RNA biosynthetic process
FOC79_08690	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FOC79_08700	COG0484	heat shock protein binding
FOC79_08705	COG0582	viral genome integration into host DNA
FOC79_08780	COG5377	YqaJ viral recombinase family
FOC79_08895	COG0616	signal peptide processing
FOC79_08985	COG5632	N-Acetylmuramoyl-L-alanine amidase
FOC79_08985	COG5263	repeat protein
FOC79_09005	COG0481	GTPase activity
FOC79_09020	COG0488	(ABC) transporter
FOC79_09025	COG1454	alcohol dehydrogenase
FOC79_09025	COG1012	belongs to the aldehyde dehydrogenase family
FOC79_09030	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC79_09030	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC79_09065	COG0584	glycerophosphoryl diester phosphodiesterase
FOC79_09070	COG2824	Alkylphosphonate utilization operon protein PhnA
FOC79_09100	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC79_09105	COG2207	Transcriptional regulator
FOC79_09135	COG1293	RNA-binding protein homologous to eukaryotic snRNP
FOC79_09140	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC79_09145	COG1227	inorganic diphosphatase activity
FOC79_09150	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
FOC79_09155	COG1882	Formate acetyltransferase
FOC79_09165	COG0187	DNA topoisomerase II activity
FOC79_09170	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FOC79_09175	COG0514	ATP-dependent DNA helicase (RecQ)
FOC79_09185	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
FOC79_09195	COG4974	Belongs to the 'phage' integrase family
FOC79_09200	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FOC79_09205	COG0758	DNA mediated transformation
FOC79_09235	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FOC79_09245	COG0681	Belongs to the peptidase S26 family
FOC79_09250	COG3409	Peptidoglycan-binding domain 1 protein
FOC79_09250	COG0793	Belongs to the peptidase S41A family
FOC79_09255	COG0813	purine-nucleoside phosphorylase activity
FOC79_09260	COG4479	Belongs to the UPF0346 family
FOC79_09265	COG1272	protein, Hemolysin III
FOC79_09280	COG1346	cytolysis
FOC79_09290	COG0588	phosphoglycerate mutase activity
FOC79_09295	COG0742	ribosomal rna small subunit methyltransferase
FOC79_09305	COG0765	amino acid transport
FOC79_09310	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC79_09315	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FOC79_09320	COG0805	protein transport
FOC79_09325	COG0672	)-iron permease
FOC79_09330	COG2837	iron assimilation
FOC79_09345	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
FOC79_09350	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
FOC79_09355	COG0488	(ABC) transporter
FOC79_09360	COG1132	(ABC) transporter
FOC79_09365	COG3475	LICD family
FOC79_09370	COG1063	alcohol dehydrogenase
FOC79_09375	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
FOC79_09380	COG4750	Nucleotidyl transferase
FOC79_09385	COG0697	spore germination
FOC79_09400	COG3935	DnaD domain protein
FOC79_09410	COG0483	inositol monophosphate 1-phosphatase activity
FOC79_09420	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
FOC79_09430	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FOC79_09435	COG0505	Belongs to the CarA family
FOC79_09440	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
FOC79_09445	COG0540	Belongs to the ATCase OTCase family
FOC79_09450	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
FOC79_09480	COG4608	Belongs to the ABC transporter superfamily