locus-tag class description CVPH_0001 PF00308 Bacterial dnaA protein CVPH_0001 PF08299 Bacterial dnaA protein helix-turn-helix CVPH_0001 PF11638 DnaA N-terminal domain CVPH_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain CVPH_0002 PF02767 DNA polymerase III beta subunit, central domain CVPH_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain CVPH_0003 PF02463 RecF/RecN/SMC N terminal domain CVPH_0004 PF01751 Toprim domain CVPH_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVPH_0004 PF18053 DNA gyrase B subunit insert domain CVPH_0004 PF00986 DNA gyrase B subunit, carboxyl terminus CVPH_0004 PF00204 DNA gyrase B CVPH_0005 PF00485 Phosphoribulokinase / Uridine kinase family CVPH_0008 PF08264 Anticodon-binding domain of tRNA CVPH_0008 PF00133 tRNA synthetases class I (I, L, M and V) CVPH_0008 PF13603 Leucyl-tRNA synthetase, Domain 2 CVPH_0009 PF01180 Dihydroorotate dehydrogenase CVPH_0012 PF02798 Glutathione S-transferase, N-terminal domain CVPH_0012 PF00043 Glutathione S-transferase, C-terminal domain CVPH_0013 PF02167 Cytochrome C1 family CVPH_0014 PF00033 Cytochrome b/b6/petB CVPH_0014 PF00032 Cytochrome b(C-terminal)/b6/petD CVPH_0015 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CVPH_0015 PF00355 Rieske [2Fe-2S] domain CVPH_0017 PF02810 SEC-C motif CVPH_0017 PF07517 SecA DEAD-like domain CVPH_0017 PF01043 SecA preprotein cross-linking domain CVPH_0017 PF07516 SecA Wing and Scaffold domain CVPH_0018 PF03702 Anhydro-N-acetylmuramic acid kinase CVPH_0019 PF01979 Amidohydrolase family CVPH_0021 PF06574 FAD synthetase CVPH_0021 PF01687 Riboflavin kinase CVPH_0022 PF14815 NUDIX domain CVPH_0022 PF00730 HhH-GPD superfamily base excision DNA repair protein CVPH_0023 PF04204 Homoserine O-succinyltransferase CVPH_0025 PF00155 Aminotransferase class I and II CVPH_0026 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVPH_0028 PF01259 SAICAR synthetase CVPH_0031 PF13288 DXP reductoisomerase C-terminal domain CVPH_0031 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CVPH_0031 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CVPH_0033 PF01255 Putative undecaprenyl diphosphate synthase CVPH_0034 PF00977 Histidine biosynthesis protein CVPH_0036 PF01040 UbiA prenyltransferase family CVPH_0038 PF02630 SCO1/SenC CVPH_0041 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CVPH_0041 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CVPH_0042 PF00115 Cytochrome C and Quinol oxidase polypeptide I CVPH_0043 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CVPH_0044 PF00510 Cytochrome c oxidase subunit III CVPH_0047 PF00115 Cytochrome C and Quinol oxidase polypeptide I CVPH_0050 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVPH_0050 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CVPH_0056 PF00361 Proton-conducting membrane transporter CVPH_0057 PF00361 Proton-conducting membrane transporter CVPH_0057 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CVPH_0058 PF00361 Proton-conducting membrane transporter CVPH_0058 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CVPH_0060 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CVPH_0061 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CVPH_0062 PF12838 4Fe-4S dicluster domain CVPH_0063 PF00146 NADH dehydrogenase CVPH_0064 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CVPH_0064 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVPH_0064 PF00384 Molybdopterin oxidoreductase CVPH_0065 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CVPH_0065 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CVPH_0065 PF10531 SLBB domain CVPH_0067 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CVPH_0068 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CVPH_0069 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CVPH_0070 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CVPH_0071 PF01523 Putative modulator of DNA gyrase CVPH_0073 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVPH_0077 PF01168 Alanine racemase, N-terminal domain CVPH_0078 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CVPH_0079 PF00696 Amino acid kinase family CVPH_0099 PF01641 SelR domain CVPH_0100 PF01743 Poly A polymerase head domain CVPH_0100 PF12627 Probable RNA and SrmB- binding site of polymerase A CVPH_0104 PF01926 50S ribosome-binding GTPase CVPH_0107 PF00034 Cytochrome c CVPH_0108 PF05697 Bacterial trigger factor protein (TF) CVPH_0108 PF05698 Bacterial trigger factor protein (TF) C-terminus CVPH_0108 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVPH_0109 PF00574 Clp protease CVPH_0110 PF10431 C-terminal, D2-small domain, of ClpB protein CVPH_0110 PF06689 ClpX C4-type zinc finger CVPH_0110 PF07724 AAA domain (Cdc48 subfamily) CVPH_0111 PF13167 GTP-binding GTPase N-terminal CVPH_0111 PF01926 50S ribosome-binding GTPase CVPH_0111 PF16360 GTP-binding GTPase Middle Region CVPH_0112 PF02190 ATP-dependent protease La (LON) substrate-binding domain CVPH_0112 PF05362 Lon protease (S16) C-terminal proteolytic domain CVPH_0112 PF00004 ATPase family associated with various cellular activities (AAA) CVPH_0115 PF13098 Thioredoxin-like domain CVPH_0115 PF10411 Disulfide bond isomerase protein N-terminus CVPH_0116 PF00883 Cytosol aminopeptidase family, catalytic domain CVPH_0116 PF02789 Cytosol aminopeptidase family, N-terminal domain CVPH_0119 PF00753 Metallo-beta-lactamase superfamily CVPH_0119 PF00258 Flavodoxin CVPH_0123 PF07556 Protein of unknown function (DUF1538) CVPH_0124 PF07556 Protein of unknown function (DUF1538) CVPH_0125 PF01063 Amino-transferase class IV CVPH_0127 PF02223 Thymidylate kinase CVPH_0128 PF09115 DNA polymerase III, delta subunit, C terminal CVPH_0129 PF00202 Aminotransferase class-III CVPH_0132 PF13686 DsrE/DsrF/DrsH-like family CVPH_0133 PF01206 Sulfurtransferase TusA CVPH_0134 PF07720 Tetratricopeptide repeat CVPH_0134 PF01435 Peptidase family M48 CVPH_0135 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CVPH_0136 PF01725 Ham1 family CVPH_0137 PF06969 HemN C-terminal domain CVPH_0137 PF04055 Radical SAM superfamily CVPH_0149 PF00005 ABC transporter CVPH_0149 PF00664 ABC transporter transmembrane region CVPH_0155 PF08241 Methyltransferase domain CVPH_0156 PF01297 Zinc-uptake complex component A periplasmic CVPH_0157 PF08003 Protein of unknown function (DUF1698) CVPH_0159 PF01765 Ribosome recycling factor CVPH_0160 PF00696 Amino acid kinase family CVPH_0161 PF00005 ABC transporter CVPH_0161 PF17755 UvrA DNA-binding domain CVPH_0161 PF17760 UvrA interaction domain CVPH_0163 PF00551 Formyl transferase CVPH_0164 PF00586 AIR synthase related protein, N-terminal domain CVPH_0164 PF02769 AIR synthase related protein, C-terminal domain CVPH_0165 PF01066 CDP-alcohol phosphatidyltransferase CVPH_0166 PF00308 Bacterial dnaA protein CVPH_0168 PF14824 Sirohaem biosynthesis protein central CVPH_0168 PF10414 Sirohaem synthase dimerisation region CVPH_0168 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVPH_0171 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CVPH_0171 PF01578 Cytochrome C assembly protein CVPH_0173 PF01546 Peptidase family M20/M25/M40 CVPH_0173 PF07687 Peptidase dimerisation domain CVPH_0174 PF01746 tRNA (Guanine-1)-methyltransferase CVPH_0205 PF00543 Nitrogen regulatory protein P-II CVPH_0206 PF00909 Ammonium Transporter Family CVPH_0207 PF00701 Dihydrodipicolinate synthetase family CVPH_0208 PF06804 NlpB/DapX lipoprotein CVPH_0209 PF03120 NAD-dependent DNA ligase OB-fold domain CVPH_0209 PF00533 BRCA1 C Terminus (BRCT) domain CVPH_0209 PF01653 NAD-dependent DNA ligase adenylation domain CVPH_0210 PF00543 Nitrogen regulatory protein P-II CVPH_0213 PF00571 CBS domain CVPH_0214 PF03861 ANTAR domain CVPH_0214 PF08376 Nitrate and nitrite sensing CVPH_0215 PF00902 Sec-independent protein translocase protein (TatC) CVPH_0216 PF02416 mttA/Hcf106 family CVPH_0217 PF02416 mttA/Hcf106 family CVPH_0218 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CVPH_0219 PF01502 Phosphoribosyl-AMP cyclohydrolase CVPH_0223 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVPH_0223 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVPH_0229 PF00472 RF-1 domain CVPH_0229 PF03462 PCRF domain CVPH_0230 PF00312 Ribosomal protein S15 CVPH_0231 PF03279 Bacterial lipid A biosynthesis acyltransferase CVPH_0232 PF13662 Toprim domain CVPH_0232 PF01807 CHC2 zinc finger CVPH_0232 PF08275 DNA primase catalytic core, N-terminal domain CVPH_0232 PF08278 DNA primase DnaG DnaB-binding CVPH_0232 PF10410 DnaB-helicase binding domain of primase CVPH_0233 PF03717 Penicillin-binding Protein dimerisation domain CVPH_0233 PF00905 Penicillin binding protein transpeptidase domain CVPH_0235 PF01795 MraW methylase family CVPH_0236 PF02381 MraZ protein, putative antitoxin-like CVPH_0238 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CVPH_0240 PF03989 DNA gyrase C-terminal domain, beta-propeller CVPH_0240 PF00521 DNA gyrase/topoisomerase IV, subunit A CVPH_0242 PF02649 Type I GTP cyclohydrolase folE2 CVPH_0243 PF00793 DAHP synthetase I family CVPH_0244 PF00521 DNA gyrase/topoisomerase IV, subunit A CVPH_0244 PF03989 DNA gyrase C-terminal domain, beta-propeller CVPH_0246 PF00009 Elongation factor Tu GTP binding domain CVPH_0246 PF03144 Elongation factor Tu domain 2 CVPH_0246 PF16658 Class II release factor RF3, C-terminal domain CVPH_0247 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CVPH_0248 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CVPH_0248 PF00953 Glycosyl transferase family 4 CVPH_0250 PF00037 4Fe-4S binding domain CVPH_0258 PF05958 tRNA (Uracil-5-)-methyltransferase CVPH_0261 PF07690 Major Facilitator Superfamily CVPH_0262 PF00933 Glycosyl hydrolase family 3 N terminal domain CVPH_0268 PF04055 Radical SAM superfamily CVPH_0269 PF08534 Redoxin CVPH_0274 PF01467 Cytidylyltransferase-like CVPH_0275 PF00753 Metallo-beta-lactamase superfamily CVPH_0276 PF00849 RNA pseudouridylate synthase CVPH_0276 PF01479 S4 domain CVPH_0279 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CVPH_0279 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CVPH_0279 PF06827 Zinc finger found in FPG and IleRS CVPH_0283 PF01571 Aminomethyltransferase folate-binding domain CVPH_0284 PF03600 Citrate transporter CVPH_0285 PF03309 Type III pantothenate kinase CVPH_0286 PF00579 tRNA synthetases class I (W and Y) CVPH_0288 PF00849 RNA pseudouridylate synthase CVPH_0288 PF01479 S4 domain CVPH_0289 PF00133 tRNA synthetases class I (I, L, M and V) CVPH_0289 PF08264 Anticodon-binding domain of tRNA CVPH_0289 PF06827 Zinc finger found in FPG and IleRS CVPH_0290 PF01761 3-dehydroquinate synthase CVPH_0292 PF02686 Glu-tRNAGln amidotransferase C subunit CVPH_0293 PF01425 Amidase CVPH_0294 PF02637 GatB domain CVPH_0294 PF02934 GatB/GatE catalytic domain CVPH_0295 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CVPH_0296 PF02163 Peptidase family M50 CVPH_0297 PF04073 Aminoacyl-tRNA editing domain CVPH_0297 PF03129 Anticodon binding domain CVPH_0297 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVPH_0298 PF02666 Phosphatidylserine decarboxylase CVPH_0299 PF03471 Transporter associated domain CVPH_0299 PF00571 CBS domain CVPH_0299 PF01595 Cyclin M transmembrane N-terminal domain CVPH_0300 PF03952 Enolase, N-terminal domain CVPH_0300 PF00113 Enolase, C-terminal TIM barrel domain CVPH_0301 PF00226 DnaJ domain CVPH_0301 PF00684 DnaJ central domain CVPH_0301 PF01556 DnaJ C terminal domain CVPH_0302 PF00012 Hsp70 protein CVPH_0303 PF01467 Cytidylyltransferase-like CVPH_0305 PF00719 Inorganic pyrophosphatase CVPH_0307 PF00989 PAS fold CVPH_0307 PF00512 His Kinase A (phospho-acceptor) domain CVPH_0307 PF00672 HAMP domain CVPH_0307 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVPH_0308 PF00072 Response regulator receiver domain CVPH_0308 PF00486 Transcriptional regulatory protein, C terminal CVPH_0309 PF02254 TrkA-N domain CVPH_0309 PF02080 TrkA-C domain CVPH_0310 PF02386 Cation transport protein CVPH_0311 PF06733 DEAD_2 CVPH_0311 PF13307 Helicase C-terminal domain CVPH_0312 PF00348 Polyprenyl synthetase CVPH_0313 PF01728 FtsJ-like methyltransferase CVPH_0314 PF03144 Elongation factor Tu domain 2 CVPH_0314 PF00009 Elongation factor Tu GTP binding domain CVPH_0314 PF00679 Elongation factor G C-terminus CVPH_0315 PF00873 AcrB/AcrD/AcrF family CVPH_0317 PF03190 Protein of unknown function, DUF255 CVPH_0319 PF01330 RuvA N terminal domain CVPH_0319 PF07499 RuvA, C-terminal domain CVPH_0320 PF00694 Aconitase C-terminal domain CVPH_0321 PF00330 Aconitase family (aconitate hydratase) CVPH_0322 PF13537 Glutamine amidotransferase domain CVPH_0322 PF00733 Asparagine synthase CVPH_0323 PF00075 RNase H CVPH_0329 PF03364 Polyketide cyclase / dehydrase and lipid transport CVPH_0330 PF01668 SmpB protein CVPH_0331 PF00216 Bacterial DNA-binding protein CVPH_0332 PF00334 Nucleoside diphosphate kinase CVPH_0333 PF04055 Radical SAM superfamily CVPH_0335 PF04551 GcpE protein CVPH_0337 PF02780 Transketolase, C-terminal domain CVPH_0337 PF02779 Transketolase, pyrimidine binding domain CVPH_0337 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CVPH_0338 PF01136 Peptidase family U32 CVPH_0338 PF16325 Peptidase family U32 C-terminal domain CVPH_0339 PF05175 Methyltransferase small domain CVPH_0340 PF00462 Glutaredoxin CVPH_0344 PF02769 AIR synthase related protein, C-terminal domain CVPH_0344 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CVPH_0344 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CVPH_0345 PF01709 Transcriptional regulator CVPH_0346 PF02445 Quinolinate synthetase A protein CVPH_0347 PF00152 tRNA synthetases class II (D, K and N) CVPH_0347 PF02938 GAD domain CVPH_0347 PF01336 OB-fold nucleic acid binding domain CVPH_0349 PF00557 Metallopeptidase family M24 CVPH_0350 PF01435 Peptidase family M48 CVPH_0351 PF04011 LemA family CVPH_0355 PF00929 Exonuclease CVPH_0356 PF01192 RNA polymerase Rpb6 CVPH_0361 PF11490 DNA polymerase III polC-type N-terminus II CVPH_0361 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CVPH_0361 PF14579 Helix-hairpin-helix motif CVPH_0361 PF02811 PHP domain CVPH_0361 PF00929 Exonuclease CVPH_0361 PF07733 Bacterial DNA polymerase III alpha NTPase domain CVPH_0361 PF14480 DNA polymerase III polC-type N-terminus I CVPH_0362 PF16177 Acetyl-coenzyme A synthetase N-terminus CVPH_0362 PF00501 AMP-binding enzyme CVPH_0362 PF13193 AMP-binding enzyme C-terminal domain CVPH_0364 PF00490 Delta-aminolevulinic acid dehydratase CVPH_0365 PF13667 ThiC-associated domain CVPH_0365 PF01964 Radical SAM ThiC family CVPH_0366 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CVPH_0367 PF01926 50S ribosome-binding GTPase CVPH_0367 PF01018 GTP1/OBG CVPH_0371 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CVPH_0372 PF02548 Ketopantoate hydroxymethyltransferase CVPH_0373 PF02569 Pantoate-beta-alanine ligase CVPH_0374 PF01106 NifU-like domain CVPH_0376 PF00586 AIR synthase related protein, N-terminal domain CVPH_0376 PF02769 AIR synthase related protein, C-terminal domain CVPH_0377 PF01258 Prokaryotic dksA/traR C4-type zinc finger CVPH_0378 PF13419 Haloacid dehalogenase-like hydrolase CVPH_0379 PF00291 Pyridoxal-phosphate dependent enzyme CVPH_0379 PF00585 C-terminal regulatory domain of Threonine dehydratase CVPH_0384 PF00180 Isocitrate/isopropylmalate dehydrogenase CVPH_0392 PF00155 Aminotransferase class I and II CVPH_0393 PF02151 UvrB/uvrC motif CVPH_0393 PF17757 UvrB interaction domain CVPH_0393 PF12344 Ultra-violet resistance protein B CVPH_0393 PF04851 Type III restriction enzyme, res subunit CVPH_0393 PF00271 Helicase conserved C-terminal domain CVPH_0394 PF04055 Radical SAM superfamily CVPH_0397 PF01264 Chorismate synthase CVPH_0400 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CVPH_0403 PF01494 FAD binding domain CVPH_0404 PF01243 Pyridoxamine 5'-phosphate oxidase CVPH_0404 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CVPH_0405 PF08501 Shikimate dehydrogenase substrate binding domain CVPH_0405 PF01488 Shikimate / quinate 5-dehydrogenase CVPH_0405 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CVPH_0406 PF10150 Ribonuclease E/G family CVPH_0406 PF00575 S1 RNA binding domain CVPH_0406 PF12111 Polyribonucleotide phosphorylase C terminal CVPH_0409 PF02673 Bacitracin resistance protein BacA CVPH_0410 PF01569 PAP2 superfamily CVPH_0411 PF11940 Domain of unknown function (DUF3458) Ig-like fold CVPH_0411 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CVPH_0411 PF01433 Peptidase family M1 domain CVPH_0412 PF00994 Probable molybdopterin binding domain CVPH_0412 PF02464 Competence-damaged protein CVPH_0412 PF18146 Damage-inducible protein CinA KH domain CVPH_0415 PF01207 Dihydrouridine synthase (Dus) CVPH_0416 PF02491 SHS2 domain inserted in FTSA CVPH_0417 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CVPH_0418 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVPH_0418 PF00205 Thiamine pyrophosphate enzyme, central domain CVPH_0418 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVPH_0419 PF10369 Small subunit of acetolactate synthase CVPH_0420 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CVPH_0420 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CVPH_0421 PF01066 CDP-alcohol phosphatidyltransferase CVPH_0422 PF08502 LeuA allosteric (dimerisation) domain CVPH_0422 PF00682 HMGL-like CVPH_0425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CVPH_0425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CVPH_0426 PF00202 Aminotransferase class-III CVPH_0428 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CVPH_0429 PF03448 MgtE intracellular N domain CVPH_0429 PF01769 Divalent cation transporter CVPH_0429 PF00571 CBS domain CVPH_0433 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CVPH_0433 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CVPH_0433 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CVPH_0433 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CVPH_0435 PF00456 Transketolase, thiamine diphosphate binding domain CVPH_0435 PF17831 Pyruvate dehydrogenase E1 component middle domain CVPH_0438 PF00892 EamA-like transporter family CVPH_0439 PF01138 3' exoribonuclease family, domain 1 CVPH_0439 PF00575 S1 RNA binding domain CVPH_0439 PF03725 3' exoribonuclease family, domain 2 CVPH_0439 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CVPH_0439 PF00013 KH domain CVPH_0445 PF13187 4Fe-4S dicluster domain CVPH_0445 PF12838 4Fe-4S dicluster domain CVPH_0448 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CVPH_0448 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVPH_0448 PF10518 TAT (twin-arginine translocation) pathway signal sequence CVPH_0452 PF00115 Cytochrome C and Quinol oxidase polypeptide I CVPH_0453 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVPH_0454 PF00403 Heavy-metal-associated domain CVPH_0466 PF00149 Calcineurin-like phosphoesterase CVPH_0467 PF01168 Alanine racemase, N-terminal domain CVPH_0467 PF00842 Alanine racemase, C-terminal domain CVPH_0468 PF00772 DnaB-like helicase N terminal domain CVPH_0468 PF03796 DnaB-like helicase C terminal domain CVPH_0469 PF01281 Ribosomal protein L9, N-terminal domain CVPH_0469 PF03948 Ribosomal protein L9, C-terminal domain CVPH_0470 PF01084 Ribosomal protein S18 CVPH_0471 PF01250 Ribosomal protein S6 CVPH_0472 PF14814 Bifunctional transglycosylase second domain CVPH_0472 PF00905 Penicillin binding protein transpeptidase domain CVPH_0472 PF00912 Transglycosylase CVPH_0473 PF00814 Glycoprotease family CVPH_0474 PF01578 Cytochrome C assembly protein CVPH_0475 PF03100 CcmE CVPH_0476 PF08534 Redoxin CVPH_0477 PF00216 Bacterial DNA-binding protein CVPH_0501 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CVPH_0501 PF02843 Phosphoribosylglycinamide synthetase, C domain CVPH_0501 PF02844 Phosphoribosylglycinamide synthetase, N domain CVPH_0522 PF13145 PPIC-type PPIASE domain CVPH_0527 PF01252 Signal peptidase (SPase) II CVPH_0528 PF01266 FAD dependent oxidoreductase CVPH_0530 PF02272 DHHA1 domain CVPH_0530 PF17768 RecJ OB domain CVPH_0530 PF01368 DHH family CVPH_0531 PF02824 TGS domain CVPH_0531 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVPH_0531 PF03129 Anticodon binding domain CVPH_0531 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CVPH_0532 PF00707 Translation initiation factor IF-3, C-terminal domain CVPH_0532 PF05198 Translation initiation factor IF-3, N-terminal domain CVPH_0533 PF01632 Ribosomal protein L35 CVPH_0534 PF00453 Ribosomal protein L20 CVPH_0536 PF01409 tRNA synthetases class II core domain (F) CVPH_0536 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CVPH_0537 PF03483 B3/4 domain CVPH_0537 PF03484 tRNA synthetase B5 domain CVPH_0537 PF03147 Ferredoxin-fold anticodon binding domain CVPH_0537 PF01588 Putative tRNA binding domain CVPH_0537 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CVPH_0538 PF00216 Bacterial DNA-binding protein CVPH_0543 PF01625 Peptide methionine sulfoxide reductase CVPH_0544 PF00899 ThiF family CVPH_0548 PF00464 Serine hydroxymethyltransferase CVPH_0549 PF03477 ATP cone domain CVPH_0551 PF18073 Rubredoxin metal binding domain CVPH_0552 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CVPH_0552 PF12557 Cob(I)alamin adenosyltransferase N terminal CVPH_0554 PF07715 TonB-dependent Receptor Plug Domain CVPH_0554 PF00593 TonB dependent receptor CVPH_0555 PF00266 Aminotransferase class-V CVPH_0556 PF01842 ACT domain CVPH_0556 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVPH_0556 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVPH_0557 PF00800 Prephenate dehydratase CVPH_0557 PF01817 Chorismate mutase type II CVPH_0557 PF01842 ACT domain CVPH_0558 PF00155 Aminotransferase class I and II CVPH_0559 PF02153 Prephenate dehydrogenase CVPH_0560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CVPH_0562 PF04358 DsrC like protein CVPH_0563 PF10502 Signal peptidase, peptidase S26 CVPH_0564 PF17762 HTH domain found in ParB protein CVPH_0564 PF02195 ParB-like nuclease domain CVPH_0566 PF13180 PDZ domain CVPH_0566 PF03572 Peptidase family S41 CVPH_0569 PF01790 Prolipoprotein diacylglyceryl transferase CVPH_0570 PF00303 Thymidylate synthase CVPH_0573 PF14622 Ribonuclease-III-like CVPH_0573 PF00035 Double-stranded RNA binding motif CVPH_0574 PF07650 KH domain CVPH_0574 PF01926 50S ribosome-binding GTPase CVPH_0575 PF11967 Recombination protein O N terminal CVPH_0575 PF02565 Recombination protein O C terminal CVPH_0576 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CVPH_0577 PF01648 4'-phosphopantetheinyl transferase superfamily CVPH_0581 PF00578 AhpC/TSA family CVPH_0582 PF06421 GTP-binding protein LepA C-terminus CVPH_0582 PF00009 Elongation factor Tu GTP binding domain CVPH_0582 PF00679 Elongation factor G C-terminus CVPH_0585 PF01578 Cytochrome C assembly protein CVPH_0586 PF00448 SRP54-type protein, GTPase domain CVPH_0586 PF02881 SRP54-type protein, helical bundle domain CVPH_0586 PF02978 Signal peptide binding domain CVPH_0588 PF00815 Histidinol dehydrogenase CVPH_0589 PF01634 ATP phosphoribosyltransferase CVPH_0590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CVPH_0592 PF08459 UvrC Helix-hairpin-helix N-terminal CVPH_0592 PF01541 GIY-YIG catalytic domain CVPH_0592 PF02151 UvrB/uvrC motif CVPH_0594 PF00005 ABC transporter CVPH_0594 PF12848 ABC transporter CVPH_0594 PF16326 ABC transporter C-terminal domain CVPH_0595 PF03918 Cytochrome C biogenesis protein CVPH_0596 PF01894 Uncharacterised protein family UPF0047 CVPH_0597 PF00152 tRNA synthetases class II (D, K and N) CVPH_0597 PF01336 OB-fold nucleic acid binding domain CVPH_0599 PF02224 Cytidylate kinase CVPH_0600 PF00575 S1 RNA binding domain CVPH_0601 PF00216 Bacterial DNA-binding protein CVPH_0604 PF04241 Protein of unknown function (DUF423) CVPH_0606 PF03193 RsgA GTPase CVPH_0608 PF16491 CAAX prenyl protease N-terminal, five membrane helices CVPH_0608 PF01435 Peptidase family M48 CVPH_0609 PF01842 ACT domain CVPH_0609 PF13840 ACT domain CVPH_0609 PF00696 Amino acid kinase family CVPH_0610 PF01063 Amino-transferase class IV CVPH_0612 PF01202 Shikimate kinase CVPH_0616 PF03279 Bacterial lipid A biosynthesis acyltransferase CVPH_0617 PF00132 Bacterial transferase hexapeptide (six repeats) CVPH_0618 PF02082 Transcriptional regulator CVPH_0619 PF00266 Aminotransferase class-V CVPH_0620 PF01592 NifU-like N terminal domain CVPH_0621 PF01521 Iron-sulphur cluster biosynthesis CVPH_0622 PF07743 HSCB C-terminal oligomerisation domain CVPH_0623 PF00012 Hsp70 protein CVPH_0624 PF00111 2Fe-2S iron-sulfur cluster binding domain CVPH_0628 PF10609 NUBPL iron-transfer P-loop NTPase CVPH_0629 PF08264 Anticodon-binding domain of tRNA CVPH_0629 PF09334 tRNA synthetases class I (M) CVPH_0630 PF01432 Peptidase family M3 CVPH_0632 PF02801 Beta-ketoacyl synthase, C-terminal domain CVPH_0632 PF00109 Beta-ketoacyl synthase, N-terminal domain CVPH_0633 PF00550 Phosphopantetheine attachment site CVPH_0634 PF06508 Queuosine biosynthesis protein QueC CVPH_0635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVPH_0635 PF01751 Toprim domain CVPH_0635 PF00204 DNA gyrase B CVPH_0635 PF00986 DNA gyrase B subunit, carboxyl terminus CVPH_0636 PF00118 TCP-1/cpn60 chaperonin family CVPH_0637 PF00166 Chaperonin 10 Kd subunit CVPH_0638 PF00140 Sigma-70 factor, region 1.2 CVPH_0638 PF04542 Sigma-70 region 2 CVPH_0638 PF04545 Sigma-70, region 4 CVPH_0639 PF00625 Guanylate kinase CVPH_0640 PF04362 Bacterial Fe(2+) trafficking CVPH_0641 PF03023 Lipid II flippase MurJ CVPH_0642 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CVPH_0642 PF00132 Bacterial transferase hexapeptide (six repeats) CVPH_0643 PF07977 FabA-like domain CVPH_0644 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CVPH_0644 PF00132 Bacterial transferase hexapeptide (six repeats) CVPH_0645 PF01103 Surface antigen CVPH_0645 PF07244 Surface antigen variable number repeat CVPH_0646 PF02163 Peptidase family M50 CVPH_0646 PF17820 PDZ domain CVPH_0648 PF01678 Diaminopimelate epimerase CVPH_0649 PF00149 Calcineurin-like phosphoesterase CVPH_0650 PF04379 ApaG domain CVPH_0651 PF00398 Ribosomal RNA adenine dimethylase CVPH_0652 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CVPH_0654 PF00873 AcrB/AcrD/AcrF family CVPH_0655 PF04055 Radical SAM superfamily CVPH_0656 PF03099 Biotin/lipoate A/B protein ligase family CVPH_0657 PF04359 Protein of unknown function (DUF493) CVPH_0658 PF05491 RuvB C-terminal winged helix domain CVPH_0658 PF17864 RuvB AAA lid domain CVPH_0658 PF05496 Holliday junction DNA helicase RuvB P-loop domain CVPH_0661 PF09967 VWA-like domain (DUF2201) CVPH_0661 PF13203 Putative metallopeptidase domain CVPH_0666 PF00463 Isocitrate lyase family CVPH_0668 PF08032 RNA 2'-O ribose methyltransferase substrate binding CVPH_0668 PF00588 SpoU rRNA Methylase family CVPH_0669 PF00639 PPIC-type PPIASE domain CVPH_0669 PF09312 SurA N-terminal domain CVPH_0670 PF04453 LPS transport system D CVPH_0671 PF01145 SPFH domain / Band 7 family CVPH_0672 PF01145 SPFH domain / Band 7 family CVPH_0673 PF13393 Histidyl-tRNA synthetase CVPH_0674 PF00709 Adenylosuccinate synthetase CVPH_0675 PF00575 S1 RNA binding domain CVPH_0675 PF08461 Ribonuclease R winged-helix domain CVPH_0675 PF17876 Cold shock domain CVPH_0675 PF00773 RNB domain CVPH_0675 PF08206 Ribonuclease B OB domain CVPH_0676 PF00920 Dehydratase family CVPH_0678 PF00929 Exonuclease CVPH_0679 PF02626 Carboxyltransferase domain, subdomain A and B CVPH_0680 PF02682 Carboxyltransferase domain, subdomain C and D CVPH_0681 PF03746 LamB/YcsF family CVPH_0683 PF02769 AIR synthase related protein, C-terminal domain CVPH_0683 PF00586 AIR synthase related protein, N-terminal domain CVPH_0684 PF00581 Rhodanese-like domain CVPH_0685 PF00111 2Fe-2S iron-sulfur cluster binding domain CVPH_0685 PF00175 Oxidoreductase NAD-binding domain CVPH_0685 PF00970 Oxidoreductase FAD-binding domain CVPH_0686 PF00268 Ribonucleotide reductase, small chain CVPH_0687 PF00317 Ribonucleotide reductase, all-alpha domain CVPH_0687 PF03477 ATP cone domain CVPH_0687 PF02867 Ribonucleotide reductase, barrel domain CVPH_0688 PF00501 AMP-binding enzyme CVPH_0688 PF13193 AMP-binding enzyme C-terminal domain CVPH_0689 PF01734 Patatin-like phospholipase CVPH_0690 PF00108 Thiolase, N-terminal domain CVPH_0690 PF02803 Thiolase, C-terminal domain CVPH_0691 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CVPH_0691 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CVPH_0691 PF00378 Enoyl-CoA hydratase/isomerase CVPH_0692 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVPH_0692 PF09317 Domain of unknown function (DUF1974) CVPH_0692 PF02770 Acyl-CoA dehydrogenase, middle domain CVPH_0692 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVPH_0694 PF00762 Ferrochelatase CVPH_0701 PF00795 Carbon-nitrogen hydrolase CVPH_0701 PF02540 NAD synthase CVPH_0706 PF03458 UPF0126 domain CVPH_0709 PF00425 chorismate binding enzyme CVPH_0709 PF04715 Anthranilate synthase component I, N terminal region CVPH_0711 PF00691 OmpA family CVPH_0712 PF07676 WD40-like Beta Propeller Repeat CVPH_0712 PF04052 TolB amino-terminal domain CVPH_0713 PF04384 Iron-sulphur cluster assembly CVPH_0714 PF04607 Region found in RelA / SpoT proteins CVPH_0714 PF02824 TGS domain CVPH_0714 PF13291 ACT domain CVPH_0715 PF13525 Outer membrane lipoprotein CVPH_0716 PF07690 Major Facilitator Superfamily CVPH_0717 PF00436 Single-strand binding protein family CVPH_0718 PF01230 HIT domain CVPH_0727 PF01029 NusB family CVPH_0728 PF00885 6,7-dimethyl-8-ribityllumazine synthase CVPH_0729 PF00925 GTP cyclohydrolase II CVPH_0729 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CVPH_0730 PF00677 Lumazine binding domain CVPH_0731 PF03631 Virulence factor BrkB CVPH_0732 PF12848 ABC transporter CVPH_0732 PF00005 ABC transporter CVPH_0733 PF01098 Cell cycle protein CVPH_0734 PF04101 Glycosyltransferase family 28 C-terminal domain CVPH_0734 PF03033 Glycosyltransferase family 28 N-terminal domain CVPH_0735 PF06968 Biotin and Thiamin Synthesis associated domain CVPH_0735 PF04055 Radical SAM superfamily CVPH_0736 PF00120 Glutamine synthetase, catalytic domain CVPH_0736 PF03951 Glutamine synthetase, beta-Grasp domain CVPH_0738 PF01218 Coproporphyrinogen III oxidase CVPH_0739 PF01300 Telomere recombination CVPH_0740 PF02899 Phage integrase, N-terminal SAM-like domain CVPH_0740 PF00589 Phage integrase family CVPH_0741 PF00183 Hsp90 protein CVPH_0742 PF01467 Cytidylyltransferase-like CVPH_0745 PF00588 SpoU rRNA Methylase family CVPH_0746 PF00459 Inositol monophosphatase family CVPH_0747 PF00106 short chain dehydrogenase CVPH_0748 PF02646 RmuC family CVPH_0749 PF13419 Haloacid dehalogenase-like hydrolase CVPH_0753 PF01783 Ribosomal L32p protein family CVPH_0754 PF02504 Fatty acid synthesis protein CVPH_0755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CVPH_0755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CVPH_0756 PF00348 Polyprenyl synthetase CVPH_0757 PF02609 Exonuclease VII small subunit CVPH_0759 PF01743 Poly A polymerase head domain CVPH_0759 PF12627 Probable RNA and SrmB- binding site of polymerase A CVPH_0759 PF12626 Polymerase A arginine-rich C-terminus CVPH_0760 PF14489 QueF-like protein CVPH_0761 PF03739 Lipopolysaccharide export system permease LptF/LptG CVPH_0762 PF07497 Rho termination factor, RNA-binding domain CVPH_0762 PF07498 Rho termination factor, N-terminal domain CVPH_0762 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVPH_0763 PF00085 Thioredoxin CVPH_0764 PF08335 GlnD PII-uridylyltransferase CVPH_0764 PF01966 HD domain CVPH_0764 PF01842 ACT domain CVPH_0764 PF01909 Nucleotidyltransferase domain CVPH_0765 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVPH_0768 PF01098 Cell cycle protein CVPH_0769 PF13406 Transglycosylase SLT domain CVPH_0770 PF07943 Penicillin-binding protein 5, C-terminal domain CVPH_0770 PF00768 D-alanyl-D-alanine carboxypeptidase CVPH_0771 PF01063 Amino-transferase class IV CVPH_0772 PF01636 Phosphotransferase enzyme family CVPH_0773 PF00483 Nucleotidyl transferase CVPH_0774 PF12170 DNA polymerase III tau subunit V interacting with alpha CVPH_0774 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CVPH_0774 PF12169 DNA polymerase III subunits gamma and tau domain III CVPH_0775 PF02575 YbaB/EbfC DNA-binding family CVPH_0776 PF02132 RecR protein CVPH_0776 PF13662 Toprim domain CVPH_0779 PF08264 Anticodon-binding domain of tRNA CVPH_0779 PF10458 Valyl tRNA synthetase tRNA binding arm CVPH_0779 PF00133 tRNA synthetases class I (I, L, M and V) CVPH_0781 PF00478 IMP dehydrogenase / GMP reductase domain CVPH_0781 PF00571 CBS domain CVPH_0787 PF13393 Histidyl-tRNA synthetase CVPH_0787 PF03129 Anticodon binding domain CVPH_0788 PF09976 Tetratricopeptide repeat-like domain CVPH_0789 PF01926 50S ribosome-binding GTPase CVPH_0789 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CVPH_0791 PF06418 CTP synthase N-terminus CVPH_0791 PF00117 Glutamine amidotransferase class-I CVPH_0794 PF00005 ABC transporter CVPH_0794 PF00664 ABC transporter transmembrane region CVPH_0795 PF00171 Aldehyde dehydrogenase family CVPH_0796 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVPH_0796 PF00205 Thiamine pyrophosphate enzyme, central domain CVPH_0796 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVPH_0810 PF00591 Glycosyl transferase family, a/b domain CVPH_0810 PF02885 Glycosyl transferase family, helical bundle domain CVPH_0813 PF00313 'Cold-shock' DNA-binding domain CVPH_0816 PF03167 Uracil DNA glycosylase superfamily CVPH_0817 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVPH_0817 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVPH_0822 PF03793 PASTA domain CVPH_0822 PF00069 Protein kinase domain CVPH_0823 PF07690 Major Facilitator Superfamily CVPH_0824 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVPH_0824 PF18267 Rubredoxin NAD+ reductase C-terminal domain CVPH_0824 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVPH_0824 PF04324 BFD-like [2Fe-2S] binding domain CVPH_0824 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVPH_0825 PF02391 MoaE protein CVPH_0826 PF12804 MobA-like NTP transferase domain CVPH_0827 PF03453 MoeA N-terminal region (domain I and II) CVPH_0827 PF03454 MoeA C-terminal region (domain IV) CVPH_0827 PF00994 Probable molybdopterin binding domain CVPH_0828 PF01967 MoaC family CVPH_0829 PF04055 Radical SAM superfamily CVPH_0829 PF06463 Molybdenum Cofactor Synthesis C CVPH_0830 PF02597 ThiS family CVPH_0840 PF00994 Probable molybdopterin binding domain CVPH_0842 PF00092 von Willebrand factor type A domain CVPH_0843 PF07728 AAA domain (dynein-related subfamily) CVPH_0843 PF08406 CbbQ/NirQ/NorQ C-terminal CVPH_0844 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CVPH_0844 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CVPH_0845 PF03466 LysR substrate binding domain CVPH_0845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVPH_0848 PF01960 ArgJ family CVPH_0849 PF00528 Binding-protein-dependent transport system inner membrane component CVPH_0851 PF08402 TOBE domain CVPH_0851 PF00005 ABC transporter CVPH_0852 PF07731 Multicopper oxidase CVPH_0852 PF07732 Multicopper oxidase CVPH_0852 PF10518 TAT (twin-arginine translocation) pathway signal sequence CVPH_0852 PF00394 Multicopper oxidase CVPH_0858 PF00210 Ferritin-like domain CVPH_0859 PF00210 Ferritin-like domain CVPH_0861 PF16916 Dimerisation domain of Zinc Transporter CVPH_0861 PF01545 Cation efflux family CVPH_0862 PF02075 Crossover junction endodeoxyribonuclease RuvC CVPH_0863 PF00085 Thioredoxin CVPH_0864 PF03960 ArsC family CVPH_0867 PF02580 D-Tyr-tRNA(Tyr) deacylase CVPH_0868 PF02092 Glycyl-tRNA synthetase beta subunit CVPH_0869 PF03775 Septum formation inhibitor MinC, C-terminal domain CVPH_0869 PF05209 Septum formation inhibitor MinC, N-terminal domain CVPH_0872 PF02472 Biopolymer transport protein ExbD/TolR CVPH_0873 PF01618 MotA/TolQ/ExbB proton channel family CVPH_0875 PF17864 RuvB AAA lid domain CVPH_0875 PF05496 Holliday junction DNA helicase RuvB P-loop domain CVPH_0875 PF05491 RuvB C-terminal winged helix domain CVPH_0877 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CVPH_0877 PF01488 Shikimate / quinate 5-dehydrogenase CVPH_0877 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CVPH_0878 PF03462 PCRF domain CVPH_0878 PF00472 RF-1 domain CVPH_0879 PF00950 ABC 3 transport family CVPH_0880 PF01475 Ferric uptake regulator family CVPH_0881 PF04355 SmpA / OmlA family CVPH_0882 PF06965 Na+/H+ antiporter 1 CVPH_0882 PF01343 Peptidase family S49 CVPH_0883 PF00005 ABC transporter CVPH_0884 PF03379 CcmB protein CVPH_0885 PF00438 S-adenosylmethionine synthetase, N-terminal domain CVPH_0885 PF02772 S-adenosylmethionine synthetase, central domain CVPH_0885 PF02773 S-adenosylmethionine synthetase, C-terminal domain CVPH_0886 PF05221 S-adenosyl-L-homocysteine hydrolase CVPH_0886 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CVPH_0887 PF02091 Glycyl-tRNA synthetase alpha subunit CVPH_0888 PF09335 SNARE associated Golgi protein CVPH_0890 PF00924 Mechanosensitive ion channel CVPH_0891 PF04055 Radical SAM superfamily CVPH_0891 PF00919 Uncharacterized protein family UPF0004 CVPH_0891 PF01938 TRAM domain CVPH_0892 PF02630 SCO1/SenC CVPH_0894 PF02562 PhoH-like protein CVPH_0896 PF04356 Protein of unknown function (DUF489) CVPH_0897 PF01649 Ribosomal protein S20 CVPH_0899 PF02601 Exonuclease VII, large subunit CVPH_0899 PF13742 OB-fold nucleic acid binding domain CVPH_0900 PF08525 Opacity-associated protein A N-terminal motif CVPH_0900 PF01551 Peptidase family M23 CVPH_0900 PF01476 LysM domain CVPH_0904 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CVPH_0907 PF02542 YgbB family CVPH_0908 PF01225 Mur ligase family, catalytic domain CVPH_0908 PF08245 Mur ligase middle domain CVPH_0908 PF02875 Mur ligase family, glutamate ligase domain CVPH_0910 PF01820 D-ala D-ala ligase N-terminus CVPH_0910 PF07478 D-ala D-ala ligase C-terminus CVPH_0911 PF08478 POTRA domain, FtsQ-type CVPH_0911 PF03799 Cell division protein FtsQ CVPH_0913 PF01476 LysM domain CVPH_0913 PF01464 Transglycosylase SLT domain CVPH_0914 PF01722 BolA-like protein CVPH_0915 PF00175 Oxidoreductase NAD-binding domain CVPH_0915 PF00970 Oxidoreductase FAD-binding domain CVPH_0915 PF00111 2Fe-2S iron-sulfur cluster binding domain CVPH_0925 PF02875 Mur ligase family, glutamate ligase domain CVPH_0925 PF08245 Mur ligase middle domain CVPH_0926 PF01027 Inhibitor of apoptosis-promoting Bax1 CVPH_0928 PF01842 ACT domain CVPH_0928 PF00742 Homoserine dehydrogenase CVPH_0928 PF03447 Homoserine dehydrogenase, NAD binding domain CVPH_0929 PF00291 Pyridoxal-phosphate dependent enzyme CVPH_0930 PF00291 Pyridoxal-phosphate dependent enzyme CVPH_0932 PF03653 Uncharacterised protein family (UPF0093) CVPH_0936 PF00675 Insulinase (Peptidase family M16) CVPH_0936 PF05193 Peptidase M16 inactive domain CVPH_0937 PF00675 Insulinase (Peptidase family M16) CVPH_0937 PF05193 Peptidase M16 inactive domain CVPH_0938 PF01794 Ferric reductase like transmembrane component CVPH_0939 PF00174 Oxidoreductase molybdopterin binding domain CVPH_0940 PF02881 SRP54-type protein, helical bundle domain CVPH_0940 PF00448 SRP54-type protein, GTPase domain CVPH_0945 PF01329 Pterin 4 alpha carbinolamine dehydratase CVPH_0946 PF03900 Porphobilinogen deaminase, C-terminal domain CVPH_0946 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CVPH_0948 PF14698 Argininosuccinate lyase C-terminal CVPH_0948 PF00206 Lyase CVPH_0949 PF00551 Formyl transferase CVPH_0949 PF02911 Formyl transferase, C-terminal domain CVPH_0952 PF00588 SpoU rRNA Methylase family CVPH_0953 PF10431 C-terminal, D2-small domain, of ClpB protein CVPH_0953 PF02861 Clp amino terminal domain, pathogenicity island component CVPH_0953 PF17871 AAA lid domain CVPH_0953 PF07724 AAA domain (Cdc48 subfamily) CVPH_0953 PF00004 ATPase family associated with various cellular activities (AAA) CVPH_0956 PF02508 Rnf-Nqr subunit, membrane protein CVPH_0958 PF17827 PrmC N-terminal domain CVPH_0958 PF05175 Methyltransferase small domain CVPH_0962 PF05681 Fumarate hydratase (Fumerase) CVPH_0962 PF05683 Fumarase C-terminus CVPH_0964 PF04085 rod shape-determining protein MreC CVPH_0966 PF00905 Penicillin binding protein transpeptidase domain CVPH_0966 PF03717 Penicillin-binding Protein dimerisation domain CVPH_0967 PF01702 Queuine tRNA-ribosyltransferase CVPH_0968 PF00005 ABC transporter CVPH_0968 PF00664 ABC transporter transmembrane region CVPH_0970 PF02631 RecX family CVPH_0971 PF00154 recA bacterial DNA recombination protein CVPH_0972 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CVPH_0972 PF01872 RibD C-terminal domain CVPH_0973 PF02441 Flavoprotein CVPH_0973 PF04127 DNA / pantothenate metabolism flavoprotein CVPH_0975 PF02811 PHP domain CVPH_0975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CVPH_0975 PF01336 OB-fold nucleic acid binding domain CVPH_0975 PF14579 Helix-hairpin-helix motif CVPH_0975 PF07733 Bacterial DNA polymerase III alpha NTPase domain CVPH_0981 PF00425 chorismate binding enzyme CVPH_0981 PF04715 Anthranilate synthase component I, N terminal region CVPH_0982 PF04983 RNA polymerase Rpb1, domain 3 CVPH_0982 PF05000 RNA polymerase Rpb1, domain 4 CVPH_0982 PF00623 RNA polymerase Rpb1, domain 2 CVPH_0982 PF04997 RNA polymerase Rpb1, domain 1 CVPH_0982 PF04998 RNA polymerase Rpb1, domain 5 CVPH_0983 PF04560 RNA polymerase Rpb2, domain 7 CVPH_0983 PF10385 RNA polymerase beta subunit external 1 domain CVPH_0983 PF04565 RNA polymerase Rpb2, domain 3 CVPH_0983 PF04561 RNA polymerase Rpb2, domain 2 CVPH_0983 PF04563 RNA polymerase beta subunit CVPH_0983 PF00562 RNA polymerase Rpb2, domain 6 CVPH_0984 PF00542 Ribosomal protein L7/L12 C-terminal domain CVPH_0984 PF16320 Ribosomal protein L7/L12 dimerisation domain CVPH_0985 PF00466 Ribosomal protein L10 CVPH_0986 PF00687 Ribosomal protein L1p/L10e family CVPH_0987 PF03946 Ribosomal protein L11, N-terminal domain CVPH_0987 PF00298 Ribosomal protein L11, RNA binding domain CVPH_0988 PF00467 KOW motif CVPH_0988 PF02357 Transcription termination factor nusG CVPH_0989 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CVPH_0990 PF03143 Elongation factor Tu C-terminal domain CVPH_0990 PF03144 Elongation factor Tu domain 2 CVPH_0990 PF00009 Elongation factor Tu GTP binding domain CVPH_0991 PF03949 Malic enzyme, NAD binding domain CVPH_0991 PF00390 Malic enzyme, N-terminal domain CVPH_0995 PF02347 Glycine cleavage system P-protein CVPH_0996 PF01230 HIT domain CVPH_1005 PF00881 Nitroreductase family CVPH_1010 PF00578 AhpC/TSA family CVPH_1013 PF03795 YCII-related domain CVPH_1015 PF05173 Dihydrodipicolinate reductase, C-terminus CVPH_1015 PF01113 Dihydrodipicolinate reductase, N-terminus CVPH_1022 PF00793 DAHP synthetase I family CVPH_1023 PF00218 Indole-3-glycerol phosphate synthase CVPH_1024 PF02566 OsmC-like protein CVPH_1025 PF05690 Thiazole biosynthesis protein ThiG CVPH_1030 PF00155 Aminotransferase class I and II CVPH_1031 PF00561 alpha/beta hydrolase fold CVPH_1032 PF00731 AIR carboxylase CVPH_1033 PF02222 ATP-grasp domain CVPH_1033 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CVPH_1035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CVPH_1035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CVPH_1036 PF02348 Cytidylyltransferase CVPH_1037 PF03966 Trm112p-like protein CVPH_1038 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CVPH_1040 PF02687 FtsX-like permease family CVPH_1040 PF12704 MacB-like periplasmic core domain CVPH_1041 PF00005 ABC transporter CVPH_1046 PF02261 Aspartate decarboxylase CVPH_1047 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CVPH_1048 PF02436 Conserved carboxylase domain CVPH_1048 PF00682 HMGL-like CVPH_1048 PF00364 Biotin-requiring enzyme CVPH_1050 PF01176 Translation initiation factor 1A / IF-1 CVPH_1051 PF02219 Methylenetetrahydrofolate reductase CVPH_1055 PF01699 Sodium/calcium exchanger protein CVPH_1056 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CVPH_1057 PF01520 N-acetylmuramoyl-L-alanine amidase CVPH_1059 PF07685 CobB/CobQ-like glutamine amidotransferase domain CVPH_1059 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CVPH_1061 PF13247 4Fe-4S dicluster domain CVPH_1063 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVPH_1063 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CVPH_1066 PF04358 DsrC like protein CVPH_1067 PF04077 DsrH like protein CVPH_1068 PF02635 DsrE/DsrF-like family CVPH_1069 PF02635 DsrE/DsrF-like family CVPH_1070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVPH_1070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVPH_1071 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVPH_1071 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVPH_1072 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVPH_1072 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CVPH_1073 PF01245 Ribosomal protein L19 CVPH_1074 PF00589 Phage integrase family CVPH_1074 PF02899 Phage integrase, N-terminal SAM-like domain CVPH_1078 PF00483 Nucleotidyl transferase CVPH_1079 PF01272 Transcription elongation factor, GreA/GreB, C-term CVPH_1079 PF03449 Transcription elongation factor, N-terminal CVPH_1080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CVPH_1080 PF02142 MGS-like domain CVPH_1080 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CVPH_1081 PF04333 MlaA lipoprotein CVPH_1082 PF00117 Glutamine amidotransferase class-I CVPH_1082 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CVPH_1088 PF02272 DHHA1 domain CVPH_1088 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CVPH_1088 PF01411 tRNA synthetases class II (A) CVPH_1089 PF01300 Telomere recombination CVPH_1091 PF01380 SIS domain CVPH_1092 PF00342 Phosphoglucose isomerase CVPH_1093 PF00483 Nucleotidyl transferase CVPH_1100 PF13439 Glycosyltransferase Family 4 CVPH_1100 PF00534 Glycosyl transferases group 1 CVPH_1103 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CVPH_1103 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVPH_1107 PF01975 Survival protein SurE CVPH_1108 PF00004 ATPase family associated with various cellular activities (AAA) CVPH_1108 PF07724 AAA domain (Cdc48 subfamily) CVPH_1108 PF02861 Clp amino terminal domain, pathogenicity island component CVPH_1108 PF10431 C-terminal, D2-small domain, of ClpB protein CVPH_1108 PF17871 AAA lid domain CVPH_1109 PF02617 ATP-dependent Clp protease adaptor protein ClpS CVPH_1110 PF03739 Lipopolysaccharide export system permease LptF/LptG CVPH_1111 PF02540 NAD synthase CVPH_1111 PF00958 GMP synthase C terminal domain CVPH_1111 PF00117 Glutamine amidotransferase class-I CVPH_1112 PF14437 MafB19-like deaminase CVPH_1114 PF00698 Acyl transferase domain CVPH_1115 PF01016 Ribosomal L27 protein CVPH_1116 PF00829 Ribosomal prokaryotic L21 protein CVPH_1117 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CVPH_1118 PF00149 Calcineurin-like phosphoesterase CVPH_1119 PF00773 RNB domain CVPH_1120 PF01597 Glycine cleavage H-protein CVPH_1121 PF08669 Glycine cleavage T-protein C-terminal barrel domain CVPH_1121 PF01571 Aminomethyltransferase folate-binding domain CVPH_1122 PF04279 Intracellular septation protein A CVPH_1124 PF01042 Endoribonuclease L-PSP CVPH_1125 PF00271 Helicase conserved C-terminal domain CVPH_1125 PF17191 RecG wedge domain CVPH_1125 PF00270 DEAD/DEAH box helicase CVPH_1126 PF04345 Chorismate lyase CVPH_1127 PF13847 Methyltransferase domain CVPH_1128 PF00117 Glutamine amidotransferase class-I CVPH_1129 PF00581 Rhodanese-like domain CVPH_1130 PF00462 Glutaredoxin CVPH_1131 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CVPH_1131 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CVPH_1134 PF00380 Ribosomal protein S9/S16 CVPH_1135 PF00572 Ribosomal protein L13 CVPH_1136 PF08019 Phosphoethanolamine transferase EptA/EptB CVPH_1136 PF00884 Sulfatase CVPH_1138 PF00899 ThiF family CVPH_1143 PF00271 Helicase conserved C-terminal domain CVPH_1143 PF00270 DEAD/DEAH box helicase CVPH_1143 PF12343 Cold shock protein DEAD box A CVPH_1143 PF03880 DbpA RNA binding domain CVPH_1144 PF00916 Sulfate permease family CVPH_1144 PF01740 STAS domain CVPH_1145 PF00313 'Cold-shock' DNA-binding domain CVPH_1151 PF00929 Exonuclease CVPH_1151 PF08411 Exonuclease C-terminal CVPH_1152 PF10576 Iron-sulfur binding domain of endonuclease III CVPH_1152 PF00633 Helix-hairpin-helix motif CVPH_1152 PF00730 HhH-GPD superfamily base excision DNA repair protein CVPH_1154 PF03881 Fructosamine kinase CVPH_1155 PF00117 Glutamine amidotransferase class-I CVPH_1156 PF00475 Imidazoleglycerol-phosphate dehydratase CVPH_1158 PF01118 Semialdehyde dehydrogenase, NAD binding domain CVPH_1158 PF02774 Semialdehyde dehydrogenase, dimerisation domain CVPH_1160 PF01784 NIF3 (NGG1p interacting factor 3) CVPH_1161 PF00155 Aminotransferase class I and II CVPH_1162 PF08543 Phosphomethylpyrimidine kinase CVPH_1163 PF01323 DSBA-like thioredoxin domain CVPH_1164 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CVPH_1165 PF02152 Dihydroneopterin aldolase CVPH_1166 PF02660 Glycerol-3-phosphate acyltransferase CVPH_1167 PF03976 Polyphosphate kinase 2 (PPK2) CVPH_1169 PF01061 ABC-2 type transporter CVPH_1170 PF00005 ABC transporter CVPH_1171 PF02817 e3 binding domain CVPH_1171 PF00364 Biotin-requiring enzyme CVPH_1171 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CVPH_1172 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVPH_1172 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVPH_1175 PF00890 FAD binding domain CVPH_1175 PF02910 Fumarate reductase flavoprotein C-term CVPH_1176 PF01327 Polypeptide deformylase CVPH_1178 PF02954 Bacterial regulatory protein, Fis family CVPH_1179 PF01808 AICARFT/IMPCHase bienzyme CVPH_1179 PF02142 MGS-like domain CVPH_1181 PF00270 DEAD/DEAH box helicase CVPH_1181 PF00271 Helicase conserved C-terminal domain CVPH_1181 PF03880 DbpA RNA binding domain CVPH_1182 PF01812 5-formyltetrahydrofolate cyclo-ligase family CVPH_1185 PF01494 FAD binding domain CVPH_1186 PF01523 Putative modulator of DNA gyrase CVPH_1188 PF03471 Transporter associated domain CVPH_1188 PF00571 CBS domain CVPH_1189 PF03658 RnfH family Ubiquitin CVPH_1190 PF00977 Histidine biosynthesis protein CVPH_1192 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVPH_1201 PF00814 Glycoprotease family CVPH_1202 PF12399 Branched-chain amino acid ATP-binding cassette transporter CVPH_1202 PF00005 ABC transporter CVPH_1204 PF02237 Biotin protein ligase C terminal domain CVPH_1204 PF08279 HTH domain CVPH_1204 PF03099 Biotin/lipoate A/B protein ligase family CVPH_1205 PF01219 Prokaryotic diacylglycerol kinase CVPH_1206 PF01416 tRNA pseudouridine synthase CVPH_1207 PF08267 Cobalamin-independent synthase, N-terminal domain CVPH_1207 PF01717 Cobalamin-independent synthase, Catalytic domain CVPH_1208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVPH_1208 PF03466 LysR substrate binding domain CVPH_1209 PF03600 Citrate transporter CVPH_1209 PF02080 TrkA-C domain CVPH_1210 PF00484 Carbonic anhydrase CVPH_1213 PF08328 Adenylosuccinate lyase C-terminal CVPH_1213 PF00206 Lyase CVPH_1214 PF00330 Aconitase family (aconitate hydratase) CVPH_1214 PF11791 Aconitate B N-terminal domain CVPH_1214 PF06434 Aconitate hydratase 2 N-terminus CVPH_1215 PF00471 Ribosomal protein L33 CVPH_1216 PF00830 Ribosomal L28 family CVPH_1225 PF09424 Yqey-like protein CVPH_1226 PF01165 Ribosomal protein S21 CVPH_1227 PF01196 Ribosomal protein L17 CVPH_1228 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CVPH_1228 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CVPH_1228 PF01000 RNA polymerase Rpb3/RpoA insert domain CVPH_1229 PF01479 S4 domain CVPH_1229 PF00163 Ribosomal protein S4/S9 N-terminal domain CVPH_1230 PF00411 Ribosomal protein S11 CVPH_1231 PF00416 Ribosomal protein S13/S18 CVPH_1232 PF00444 Ribosomal protein L36 CVPH_1233 PF00344 SecY translocase CVPH_1234 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CVPH_1235 PF00327 Ribosomal protein L30p/L7e CVPH_1236 PF00333 Ribosomal protein S5, N-terminal domain CVPH_1236 PF03719 Ribosomal protein S5, C-terminal domain CVPH_1237 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CVPH_1238 PF00347 Ribosomal protein L6 CVPH_1239 PF00410 Ribosomal protein S8 CVPH_1240 PF00253 Ribosomal protein S14p/S29e CVPH_1241 PF00281 Ribosomal protein L5 CVPH_1241 PF00673 ribosomal L5P family C-terminus CVPH_1242 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CVPH_1243 PF00238 Ribosomal protein L14p/L23e CVPH_1244 PF00366 Ribosomal protein S17 CVPH_1245 PF00831 Ribosomal L29 protein CVPH_1246 PF00252 Ribosomal protein L16p/L10e CVPH_1247 PF00189 Ribosomal protein S3, C-terminal domain CVPH_1247 PF07650 KH domain CVPH_1248 PF00237 Ribosomal protein L22p/L17e CVPH_1249 PF00203 Ribosomal protein S19 CVPH_1250 PF03947 Ribosomal Proteins L2, C-terminal domain CVPH_1250 PF00181 Ribosomal Proteins L2, RNA binding domain CVPH_1251 PF00276 Ribosomal protein L23 CVPH_1252 PF00573 Ribosomal protein L4/L1 family CVPH_1253 PF00297 Ribosomal protein L3 CVPH_1254 PF00338 Ribosomal protein S10p/S20e CVPH_1255 PF03144 Elongation factor Tu domain 2 CVPH_1255 PF00009 Elongation factor Tu GTP binding domain CVPH_1255 PF03143 Elongation factor Tu C-terminal domain CVPH_1256 PF00009 Elongation factor Tu GTP binding domain CVPH_1256 PF03764 Elongation factor G, domain IV CVPH_1256 PF03144 Elongation factor Tu domain 2 CVPH_1256 PF14492 Elongation Factor G, domain II CVPH_1256 PF00679 Elongation factor G C-terminus CVPH_1257 PF00177 Ribosomal protein S7p/S5e CVPH_1258 PF00164 Ribosomal protein S12/S23 CVPH_1259 PF01451 Low molecular weight phosphotyrosine protein phosphatase CVPH_1260 PF00571 CBS domain CVPH_1260 PF01380 SIS domain CVPH_1263 PF02872 5'-nucleotidase, C-terminal domain CVPH_1263 PF00149 Calcineurin-like phosphoesterase CVPH_1264 PF01225 Mur ligase family, catalytic domain CVPH_1264 PF08245 Mur ligase middle domain CVPH_1264 PF02875 Mur ligase family, glutamate ligase domain CVPH_1267 PF02875 Mur ligase family, glutamate ligase domain CVPH_1267 PF01225 Mur ligase family, catalytic domain CVPH_1267 PF08245 Mur ligase middle domain CVPH_1268 PF01066 CDP-alcohol phosphatidyltransferase CVPH_1269 PF00764 Arginosuccinate synthase CVPH_1271 PF03692 Putative zinc- or iron-chelating domain CVPH_1273 PF00152 tRNA synthetases class II (D, K and N) CVPH_1274 PF09285 Elongation factor P, C-terminal CVPH_1274 PF08207 Elongation factor P (EF-P) KOW-like domain CVPH_1274 PF01132 Elongation factor P (EF-P) OB domain CVPH_1277 PF08442 ATP-grasp domain CVPH_1277 PF00549 CoA-ligase CVPH_1278 PF02629 CoA binding domain CVPH_1278 PF00549 CoA-ligase CVPH_1283 PF04205 FMN-binding domain CVPH_1284 PF03116 NQR2, RnfD, RnfE family CVPH_1285 PF10531 SLBB domain CVPH_1285 PF12838 4Fe-4S dicluster domain CVPH_1285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CVPH_1285 PF13375 RnfC Barrel sandwich hybrid domain CVPH_1286 PF04060 Putative Fe-S cluster CVPH_1287 PF02508 Rnf-Nqr subunit, membrane protein CVPH_1291 PF13495 Phage integrase, N-terminal SAM-like domain CVPH_1291 PF00589 Phage integrase family CVPH_1299 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CVPH_1299 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CVPH_1299 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CVPH_1299 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CVPH_1300 PF00809 Pterin binding enzyme CVPH_1301 PF06480 FtsH Extracellular CVPH_1301 PF00004 ATPase family associated with various cellular activities (AAA) CVPH_1301 PF17862 AAA+ lid domain CVPH_1301 PF01434 Peptidase family M41 CVPH_1304 PF00171 Aldehyde dehydrogenase family CVPH_1305 PF00579 tRNA synthetases class I (W and Y) CVPH_1307 PF00270 DEAD/DEAH box helicase CVPH_1307 PF00271 Helicase conserved C-terminal domain CVPH_1309 PF01384 Phosphate transporter family CVPH_1310 PF01865 Protein of unknown function DUF47 CVPH_1312 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CVPH_1313 PF11734 TilS substrate C-terminal domain CVPH_1313 PF09179 TilS substrate binding domain CVPH_1313 PF01171 PP-loop family CVPH_1314 PF02130 Uncharacterized protein family UPF0054 CVPH_1315 PF18074 Primosomal protein N C-terminal domain CVPH_1315 PF00270 DEAD/DEAH box helicase CVPH_1315 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CVPH_1315 PF17764 3′ DNA-binding domain (3′BD) CVPH_1315 PF00271 Helicase conserved C-terminal domain CVPH_1317 PF00202 Aminotransferase class-III CVPH_1318 PF13419 Haloacid dehalogenase-like hydrolase CVPH_1319 PF14748 Pyrroline-5-carboxylate reductase dimerisation CVPH_1319 PF03807 NADP oxidoreductase coenzyme F420-dependent CVPH_1322 PF00557 Metallopeptidase family M24 CVPH_1322 PF05195 Aminopeptidase P, N-terminal domain CVPH_1323 PF00591 Glycosyl transferase family, a/b domain CVPH_1323 PF02885 Glycosyl transferase family, helical bundle domain CVPH_1324 PF00929 Exonuclease CVPH_1325 PF00288 GHMP kinases N terminal domain CVPH_1326 PF14572 Phosphoribosyl synthetase-associated domain CVPH_1326 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CVPH_1327 PF03979 Sigma-70 factor, region 1.1 CVPH_1327 PF00140 Sigma-70 factor, region 1.2 CVPH_1327 PF04542 Sigma-70 region 2 CVPH_1327 PF04545 Sigma-70, region 4 CVPH_1327 PF04546 Sigma-70, non-essential region CVPH_1327 PF04539 Sigma-70 region 3 CVPH_1328 PF00459 Inositol monophosphatase family CVPH_1329 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CVPH_1329 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CVPH_1330 PF02684 Lipid-A-disaccharide synthetase CVPH_1332 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CVPH_1332 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CVPH_1337 PF00293 NUDIX domain CVPH_1357 PF16123 Hydroxyacylglutathione hydrolase C-terminus CVPH_1357 PF00753 Metallo-beta-lactamase superfamily CVPH_1358 PF00462 Glutaredoxin CVPH_1359 PF00180 Isocitrate/isopropylmalate dehydrogenase CVPH_1360 PF00301 Rubredoxin CVPH_1361 PF00578 AhpC/TSA family CVPH_1361 PF10417 C-terminal domain of 1-Cys peroxiredoxin CVPH_1362 PF01406 tRNA synthetases class I (C) catalytic domain CVPH_1362 PF09190 DALR domain CVPH_1372 PF00365 Phosphofructokinase CVPH_1373 PF05191 Adenylate kinase, active site lid CVPH_1375 PF03030 Inorganic H+ pyrophosphatase CVPH_1377 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVPH_1379 PF00890 FAD binding domain CVPH_1380 PF13187 4Fe-4S dicluster domain CVPH_1380 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit CVPH_1382 PF14306 PUA-like domain CVPH_1382 PF01747 ATP-sulfurylase CVPH_1385 PF02581 Thiamine monophosphate synthase CVPH_1387 PF12705 PD-(D/E)XK nuclease superfamily CVPH_1387 PF13361 UvrD-like helicase C-terminal domain CVPH_1387 PF00580 UvrD/REP helicase N-terminal domain CVPH_1388 PF00750 tRNA synthetases class I (R) CVPH_1388 PF05746 DALR anticodon binding domain CVPH_1388 PF03485 Arginyl tRNA synthetase N terminal domain CVPH_1389 PF00476 DNA polymerase family A CVPH_1389 PF01367 5'-3' exonuclease, C-terminal SAM fold CVPH_1389 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CVPH_1389 PF01612 3'-5' exonuclease CVPH_1390 PF00005 ABC transporter CVPH_1393 PF12801 4Fe-4S binding domain CVPH_1393 PF13746 4Fe-4S dicluster domain CVPH_1393 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CVPH_1394 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CVPH_1394 PF14602 Hexapeptide repeat of succinyl-transferase CVPH_1394 PF00132 Bacterial transferase hexapeptide (six repeats) CVPH_1396 PF01040 UbiA prenyltransferase family CVPH_1397 PF01479 S4 domain CVPH_1397 PF00849 RNA pseudouridylate synthase CVPH_1398 PF01026 TatD related DNase CVPH_1400 PF02527 rRNA small subunit methyltransferase G CVPH_1401 PF01134 Glucose inhibited division protein A CVPH_1401 PF13932 GidA associated domain CVPH_1402 PF01116 Fructose-bisphosphate aldolase class-II CVPH_1403 PF00224 Pyruvate kinase, barrel domain CVPH_1403 PF02887 Pyruvate kinase, alpha/beta domain CVPH_1404 PF00162 Phosphoglycerate kinase CVPH_1406 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVPH_1406 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CVPH_1407 PF00456 Transketolase, thiamine diphosphate binding domain CVPH_1407 PF02780 Transketolase, C-terminal domain CVPH_1407 PF02779 Transketolase, pyrimidine binding domain CVPH_1408 PF01121 Dephospho-CoA kinase CVPH_1410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVPH_1418 PF02033 Ribosome-binding factor A CVPH_1419 PF00009 Elongation factor Tu GTP binding domain CVPH_1419 PF11987 Translation-initiation factor 2 CVPH_1419 PF04760 Translation initiation factor IF-2, N-terminal region CVPH_1420 PF13184 NusA-like KH domain CVPH_1420 PF08529 NusA N-terminal domain CVPH_1420 PF00575 S1 RNA binding domain CVPH_1421 PF02576 RimP N-terminal domain CVPH_1421 PF17384 RimP C-terminal SH3 domain CVPH_1422 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CVPH_1422 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CVPH_1423 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CVPH_1424 PF12002 MgsA AAA+ ATPase C terminal CVPH_1424 PF00004 ATPase family associated with various cellular activities (AAA) CVPH_1424 PF16193 AAA C-terminal domain CVPH_1425 PF02424 ApbE family CVPH_1426 PF13406 Transglycosylase SLT domain CVPH_1427 PF03652 Holliday junction resolvase CVPH_1428 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CVPH_1428 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CVPH_1430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVPH_1431 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CVPH_1431 PF01580 FtsK/SpoIIIE family CVPH_1431 PF09397 Ftsk gamma domain CVPH_1431 PF17854 FtsK alpha domain CVPH_1442 PF00156 Phosphoribosyl transferase domain CVPH_1443 PF03372 Endonuclease/Exonuclease/phosphatase family CVPH_1444 PF02390 Putative methyltransferase CVPH_1445 PF04186 FxsA cytoplasmic membrane protein CVPH_1446 PF08245 Mur ligase middle domain CVPH_1446 PF02875 Mur ligase family, glutamate ligase domain CVPH_1448 PF00156 Phosphoribosyl transferase domain CVPH_1449 PF01053 Cys/Met metabolism PLP-dependent enzyme CVPH_1450 PF07977 FabA-like domain CVPH_1451 PF02801 Beta-ketoacyl synthase, C-terminal domain CVPH_1451 PF00109 Beta-ketoacyl synthase, N-terminal domain CVPH_1452 PF02355 Protein export membrane protein CVPH_1452 PF07549 SecD/SecF GG Motif CVPH_1453 PF02355 Protein export membrane protein CVPH_1453 PF07549 SecD/SecF GG Motif CVPH_1453 PF13721 SecD export protein N-terminal TM region CVPH_1454 PF02699 Preprotein translocase subunit CVPH_1455 PF02403 Seryl-tRNA synthetase N-terminal domain CVPH_1455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVPH_1456 PF00581 Rhodanese-like domain CVPH_1458 PF00085 Thioredoxin CVPH_1460 PF00072 Response regulator receiver domain CVPH_1460 PF00196 Bacterial regulatory proteins, luxR family CVPH_1461 PF00672 HAMP domain CVPH_1461 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVPH_1461 PF07730 Histidine kinase CVPH_1461 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CVPH_1462 PF01926 50S ribosome-binding GTPase CVPH_1462 PF12631 MnmE helical domain CVPH_1462 PF10396 GTP-binding protein TrmE N-terminus CVPH_1463 PF04262 Glutamate-cysteine ligase CVPH_1464 PF02581 Thiamine monophosphate synthase CVPH_1473 PF03883 Peroxide stress protein YaaA CVPH_1474 PF00310 Glutamine amidotransferases class-II CVPH_1474 PF01645 Conserved region in glutamate synthase CVPH_1474 PF01493 GXGXG motif CVPH_1474 PF04898 Glutamate synthase central domain CVPH_1476 PF00186 Dihydrofolate reductase CVPH_1477 PF02545 Maf-like protein CVPH_1478 PF03461 TRCF domain CVPH_1478 PF00270 DEAD/DEAH box helicase CVPH_1478 PF02559 CarD-like/TRCF domain CVPH_1478 PF00271 Helicase conserved C-terminal domain CVPH_1478 PF17757 UvrB interaction domain CVPH_1479 PF00294 pfkB family carbohydrate kinase CVPH_1480 PF02401 LytB protein CVPH_1481 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVPH_1482 PF17848 Acetyl-coA carboxylase zinc finger domain CVPH_1482 PF01039 Carboxyl transferase domain CVPH_1483 PF00290 Tryptophan synthase alpha chain CVPH_1484 PF01208 Uroporphyrinogen decarboxylase (URO-D) CVPH_1485 PF01197 Ribosomal protein L31 CVPH_1486 PF00403 Heavy-metal-associated domain CVPH_1488 PF12804 MobA-like NTP transferase domain CVPH_1488 PF00132 Bacterial transferase hexapeptide (six repeats) CVPH_1494 PF00291 Pyridoxal-phosphate dependent enzyme CVPH_1495 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CVPH_1501 PF13368 Topoisomerase C-terminal repeat CVPH_1501 PF01131 DNA topoisomerase CVPH_1501 PF01751 Toprim domain CVPH_1504 PF00468 Ribosomal protein L34 CVPH_1505 PF00825 Ribonuclease P CVPH_1506 PF01809 Putative membrane protein insertion efficiency factor CVPH_1507 PF14849 YidC periplasmic domain CVPH_1507 PF02096 60Kd inner membrane protein CVPH_1508 PF01888 CbiD CVPH_1509 PF01510 N-acetylmuramoyl-L-alanine amidase CVPH_1512 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CVPH_1512 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CVPH_1513 PF02874 ATP synthase alpha/beta family, beta-barrel domain CVPH_1513 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVPH_1514 PF00231 ATP synthase CVPH_1515 PF02874 ATP synthase alpha/beta family, beta-barrel domain CVPH_1515 PF00306 ATP synthase alpha/beta chain, C terminal domain CVPH_1515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVPH_1516 PF00213 ATP synthase delta (OSCP) subunit CVPH_1517 PF00430 ATP synthase B/B' CF(0) CVPH_1518 PF00137 ATP synthase subunit C CVPH_1519 PF00119 ATP synthase A chain CVPH_1521 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVPH_1523 PF01513 ATP-NAD kinase CVPH_1524 PF01025 GrpE CVPH_1541 PF02683 Cytochrome C biogenesis protein transmembrane region CVPH_1541 PF11412 Disulphide bond corrector protein DsbC CVPH_1542 PF01220 Dehydroquinase class II CVPH_1543 PF00364 Biotin-requiring enzyme CVPH_1544 PF00289 Biotin carboxylase, N-terminal domain CVPH_1544 PF02785 Biotin carboxylase C-terminal domain CVPH_1544 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CVPH_1545 PF01118 Semialdehyde dehydrogenase, NAD binding domain CVPH_1545 PF02774 Semialdehyde dehydrogenase, dimerisation domain CVPH_1546 PF01521 Iron-sulphur cluster biosynthesis CVPH_1547 PF00285 Citrate synthase, C-terminal domain CVPH_1548 PF01209 ubiE/COQ5 methyltransferase family CVPH_1550 PF03109 ABC1 family CVPH_1551 PF01386 Ribosomal L25p family CVPH_1551 PF14693 Ribosomal protein TL5, C-terminal domain CVPH_1552 PF01195 Peptidyl-tRNA hydrolase CVPH_1553 PF01926 50S ribosome-binding GTPase CVPH_1553 PF06071 Protein of unknown function (DUF933) CVPH_1554 PF01676 Metalloenzyme superfamily CVPH_1554 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CVPH_1555 PF00834 Ribulose-phosphate 3 epimerase family CVPH_1558 PF00318 Ribosomal protein S2 CVPH_1559 PF00889 Elongation factor TS CVPH_1572 PF03840 Preprotein translocase SecG subunit CVPH_1573 PF00121 Triosephosphate isomerase