locus-tag class description J3U87_00020 PF03793 PASTA domain J3U87_00020 PF00069 Protein kinase domain J3U87_00030 PF00773 RNB domain J3U87_00040 PF00809 Pterin binding enzyme J3U87_00045 PF07694 5TMR of 5TMR-LYT J3U87_00045 PF06580 Histidine kinase J3U87_00050 PF00990 Diguanylate cyclase, GGDEF domain J3U87_00050 PF00072 Response regulator receiver domain J3U87_00065 PF01266 FAD dependent oxidoreductase J3U87_00070 PF00512 His Kinase A (phospho-acceptor) domain J3U87_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_00095 PF01523 Putative modulator of DNA gyrase J3U87_00100 PF01523 Putative modulator of DNA gyrase J3U87_00105 PF01551 Peptidase family M23 J3U87_00115 PF07715 TonB-dependent Receptor Plug Domain J3U87_00115 PF00593 TonB dependent receptor J3U87_00140 PF17760 UvrA interaction domain J3U87_00140 PF17755 UvrA DNA-binding domain J3U87_00140 PF00005 ABC transporter J3U87_00145 PF00501 AMP-binding enzyme J3U87_00145 PF13193 AMP-binding enzyme C-terminal domain J3U87_00145 PF00668 Condensation domain J3U87_00145 PF00550 Phosphopantetheine attachment site J3U87_00175 PF01156 Inosine-uridine preferring nucleoside hydrolase J3U87_00200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_00200 PF03466 LysR substrate binding domain J3U87_00215 PF07724 AAA domain (Cdc48 subfamily) J3U87_00215 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_00215 PF17871 AAA lid domain J3U87_00215 PF02861 Clp amino terminal domain, pathogenicity island component J3U87_00215 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_00220 PF17871 AAA lid domain J3U87_00220 PF07724 AAA domain (Cdc48 subfamily) J3U87_00220 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_00220 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_00225 PF07724 AAA domain (Cdc48 subfamily) J3U87_00225 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_00225 PF17871 AAA lid domain J3U87_00225 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_00225 PF02861 Clp amino terminal domain, pathogenicity island component J3U87_00230 PF00106 short chain dehydrogenase J3U87_00250 PF07670 Nucleoside recognition J3U87_00250 PF02421 Ferrous iron transport protein B J3U87_00250 PF17910 FeoB cytosolic helical domain J3U87_00250 PF07664 Ferrous iron transport protein B C terminus J3U87_00250 PF04023 FeoA domain J3U87_00255 PF04023 FeoA domain J3U87_00270 PF08447 PAS fold J3U87_00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_00270 PF08448 PAS fold J3U87_00280 PF02683 Cytochrome C biogenesis protein transmembrane region J3U87_00280 PF11412 Disulphide bond corrector protein DsbC J3U87_00295 PF00285 Citrate synthase, C-terminal domain J3U87_00300 PF00285 Citrate synthase, C-terminal domain J3U87_00305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J3U87_00305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J3U87_00325 PF00675 Insulinase (Peptidase family M16) J3U87_00325 PF05193 Peptidase M16 inactive domain J3U87_00330 PF05193 Peptidase M16 inactive domain J3U87_00330 PF00675 Insulinase (Peptidase family M16) J3U87_00335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_00335 PF00183 Hsp90 protein J3U87_00340 PF00072 Response regulator receiver domain J3U87_00340 PF04397 LytTr DNA-binding domain J3U87_00355 PF12833 Helix-turn-helix domain J3U87_00355 PF02311 AraC-like ligand binding domain J3U87_00445 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_00475 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_00475 PF12867 DinB superfamily J3U87_00590 PF01432 Peptidase family M3 J3U87_00590 PF08439 Oligopeptidase F J3U87_00595 PF00005 ABC transporter J3U87_00595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J3U87_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_00600 PF00989 PAS fold J3U87_00600 PF00512 His Kinase A (phospho-acceptor) domain J3U87_00605 PF00158 Sigma-54 interaction domain J3U87_00605 PF00072 Response regulator receiver domain J3U87_00605 PF02954 Bacterial regulatory protein, Fis family J3U87_00615 PF00005 ABC transporter J3U87_00615 PF02687 FtsX-like permease family J3U87_00615 PF12704 MacB-like periplasmic core domain J3U87_00625 PF03793 PASTA domain J3U87_00625 PF00069 Protein kinase domain J3U87_00665 PF01867 CRISPR associated protein Cas1 J3U87_00680 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_00685 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_00695 PF00557 Metallopeptidase family M24 J3U87_00705 PF06744 Type VI secretion protein IcmF C-terminal J3U87_00705 PF14331 ImcF-related N-terminal domain J3U87_00705 PF06761 Intracellular multiplication and human macrophage-killing J3U87_00725 PF04717 Type VI secretion system, phage-baseplate injector J3U87_00725 PF06715 Gp5 C-terminal repeat (3 copies) J3U87_00730 PF17871 AAA lid domain J3U87_00730 PF07724 AAA domain (Cdc48 subfamily) J3U87_00730 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_00730 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_00740 PF05947 Type VI secretion system, TssF J3U87_00760 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J3U87_00780 PF00263 Bacterial type II and III secretion system protein J3U87_00780 PF03958 Bacterial type II/III secretion system short domain J3U87_00785 PF00072 Response regulator receiver domain J3U87_00785 PF02954 Bacterial regulatory protein, Fis family J3U87_00785 PF00158 Sigma-54 interaction domain J3U87_00790 PF09308 LuxQ, periplasmic J3U87_00790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_00790 PF00512 His Kinase A (phospho-acceptor) domain J3U87_00790 PF00072 Response regulator receiver domain J3U87_00800 PF01209 ubiE/COQ5 methyltransferase family J3U87_00805 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J3U87_00805 PF14572 Phosphoribosyl synthetase-associated domain J3U87_00815 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J3U87_00830 PF13193 AMP-binding enzyme C-terminal domain J3U87_00830 PF00501 AMP-binding enzyme J3U87_00830 PF00202 Aminotransferase class-III J3U87_00830 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_00830 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_00830 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_00830 PF00550 Phosphopantetheine attachment site J3U87_00830 PF00668 Condensation domain J3U87_00855 PF00535 Glycosyl transferase family 2 J3U87_00865 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase J3U87_00870 PF00672 HAMP domain J3U87_00870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_00870 PF00512 His Kinase A (phospho-acceptor) domain J3U87_00875 PF00072 Response regulator receiver domain J3U87_00875 PF00486 Transcriptional regulatory protein, C terminal J3U87_00900 PF00005 ABC transporter J3U87_00905 PF02405 Permease MlaE J3U87_00910 PF00266 Aminotransferase class-V J3U87_00915 PF02623 FliW protein J3U87_00920 PF02599 Global regulator protein family J3U87_00930 PF07726 ATPase family associated with various cellular activities (AAA) J3U87_00930 PF17863 AAA lid domain J3U87_00960 PF00072 Response regulator receiver domain J3U87_00960 PF01584 CheW-like domain J3U87_00970 PF00593 TonB dependent receptor J3U87_00975 PF00990 Diguanylate cyclase, GGDEF domain J3U87_00975 PF00563 EAL domain J3U87_00975 PF03707 Bacterial signalling protein N terminal repeat J3U87_00985 PF07715 TonB-dependent Receptor Plug Domain J3U87_00985 PF00593 TonB dependent receptor J3U87_01010 PF07584 Aerotolerance regulator N-terminal J3U87_01010 PF00092 von Willebrand factor type A domain J3U87_01025 PF01882 Protein of unknown function DUF58 J3U87_01030 PF07726 ATPase family associated with various cellular activities (AAA) J3U87_01030 PF17863 AAA lid domain J3U87_01055 PF00534 Glycosyl transferases group 1 J3U87_01055 PF13439 Glycosyltransferase Family 4 J3U87_01080 PF00069 Protein kinase domain J3U87_01080 PF03793 PASTA domain J3U87_01085 PF01627 Hpt domain J3U87_01085 PF00072 Response regulator receiver domain J3U87_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_01085 PF00512 His Kinase A (phospho-acceptor) domain J3U87_01085 PF00672 HAMP domain J3U87_01085 PF17149 Periplasmic sensor domain found in signal transduction proteins J3U87_01100 PF08281 Sigma-70, region 4 J3U87_01100 PF04542 Sigma-70 region 2 J3U87_01105 PF07690 Major Facilitator Superfamily J3U87_01125 PF01654 Cytochrome bd terminal oxidase subunit I J3U87_01130 PF03793 PASTA domain J3U87_01130 PF00069 Protein kinase domain J3U87_01135 PF05193 Peptidase M16 inactive domain J3U87_01135 PF00675 Insulinase (Peptidase family M16) J3U87_01140 PF01136 Peptidase family U32 J3U87_01140 PF16325 Peptidase family U32 C-terminal domain J3U87_01155 PF00664 ABC transporter transmembrane region J3U87_01155 PF00005 ABC transporter J3U87_01160 PF00005 ABC transporter J3U87_01160 PF00664 ABC transporter transmembrane region J3U87_01165 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J3U87_01165 PF01266 FAD dependent oxidoreductase J3U87_01190 PF08448 PAS fold J3U87_01190 PF08447 PAS fold J3U87_01190 PF00990 Diguanylate cyclase, GGDEF domain J3U87_01190 PF00563 EAL domain J3U87_01200 PF00486 Transcriptional regulatory protein, C terminal J3U87_01200 PF00072 Response regulator receiver domain J3U87_01205 PF00512 His Kinase A (phospho-acceptor) domain J3U87_01205 PF13493 Domain of unknown function (DUF4118) J3U87_01205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_01205 PF13492 GAF domain J3U87_01205 PF02702 Osmosensitive K+ channel His kinase sensor domain J3U87_01215 PF02568 Thiamine biosynthesis protein (ThiI) J3U87_01215 PF02926 THUMP domain J3U87_01245 PF02463 RecF/RecN/SMC N terminal domain J3U87_01250 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_01250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J3U87_01250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_01255 PF00108 Thiolase, N-terminal domain J3U87_01255 PF02803 Thiolase, C-terminal domain J3U87_01260 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J3U87_01260 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J3U87_01260 PF00378 Enoyl-CoA hydratase/isomerase J3U87_01265 PF08359 YsiA-like protein, C-terminal region J3U87_01265 PF00440 Bacterial regulatory proteins, tetR family J3U87_01275 PF16884 N-terminal domain of oxidoreductase J3U87_01275 PF00107 Zinc-binding dehydrogenase J3U87_01295 PF00114 Pilin (bacterial filament) J3U87_01295 PF07963 Prokaryotic N-terminal methylation motif J3U87_01300 PF17864 RuvB AAA lid domain J3U87_01300 PF05491 RuvB C-terminal winged helix domain J3U87_01300 PF05496 Holliday junction DNA helicase RuvB P-loop domain J3U87_01315 PF00149 Calcineurin-like phosphoesterase J3U87_01320 PF00990 Diguanylate cyclase, GGDEF domain J3U87_01345 PF00463 Isocitrate lyase family J3U87_01350 PF01274 Malate synthase J3U87_01370 PF01979 Amidohydrolase family J3U87_01370 PF00449 Urease alpha-subunit, N-terminal domain J3U87_01390 PF00082 Subtilase family J3U87_01395 PF07559 Flagellar basal body protein FlaE J3U87_01395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J3U87_01395 PF00460 Flagella basal body rod protein J3U87_01405 PF00462 Glutaredoxin J3U87_01405 PF08534 Redoxin J3U87_01410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_01410 PF03466 LysR substrate binding domain J3U87_01420 PF13426 PAS domain J3U87_01420 PF07228 Stage II sporulation protein E (SpoIIE) J3U87_01425 PF00691 OmpA family J3U87_01425 PF05736 OprF membrane domain J3U87_01445 PF00072 Response regulator receiver domain J3U87_01445 PF01627 Hpt domain J3U87_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_01445 PF01584 CheW-like domain J3U87_01445 PF02895 Signal transducing histidine kinase, homodimeric domain J3U87_01460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_01460 PF00672 HAMP domain J3U87_01465 PF00771 FHIPEP family J3U87_01485 PF01740 STAS domain J3U87_01495 PF09059 TyeA J3U87_01505 PF01312 FlhB HrpN YscU SpaS Family J3U87_01510 PF01311 Bacterial export proteins, family 1 J3U87_01515 PF01313 Bacterial export proteins, family 3 J3U87_01520 PF00813 FliP family J3U87_01525 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J3U87_01540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3U87_01540 PF02874 ATP synthase alpha/beta family, beta-barrel domain J3U87_01540 PF18269 T3SS EscN ATPase C-terminal domain J3U87_01545 PF02108 Flagellar assembly protein FliH J3U87_01555 PF01514 Secretory protein of YscJ/FliF family J3U87_01585 PF03958 Bacterial type II/III secretion system short domain J3U87_01585 PF00263 Bacterial type II and III secretion system protein J3U87_01630 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_01630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J3U87_01635 PF02817 e3 binding domain J3U87_01635 PF00364 Biotin-requiring enzyme J3U87_01635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J3U87_01640 PF00676 Dehydrogenase E1 component J3U87_01640 PF16870 2-oxoglutarate dehydrogenase C-terminal J3U87_01640 PF02779 Transketolase, pyrimidine binding domain J3U87_01640 PF16078 2-oxoglutarate dehydrogenase N-terminus J3U87_01645 PF00582 Universal stress protein family J3U87_01650 PF13426 PAS domain J3U87_01650 PF00072 Response regulator receiver domain J3U87_01650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_01655 PF02954 Bacterial regulatory protein, Fis family J3U87_01655 PF00072 Response regulator receiver domain J3U87_01655 PF00158 Sigma-54 interaction domain J3U87_01660 PF00158 Sigma-54 interaction domain J3U87_01660 PF02954 Bacterial regulatory protein, Fis family J3U87_01660 PF00072 Response regulator receiver domain J3U87_01665 PF00664 ABC transporter transmembrane region J3U87_01665 PF00005 ABC transporter J3U87_01665 PF03412 Peptidase C39 family J3U87_01670 PF00664 ABC transporter transmembrane region J3U87_01670 PF00005 ABC transporter J3U87_01680 PF04055 Radical SAM superfamily J3U87_01680 PF13186 Iron-sulfur cluster-binding domain J3U87_01700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_01700 PF00072 Response regulator receiver domain J3U87_01700 PF13426 PAS domain J3U87_01720 PF00990 Diguanylate cyclase, GGDEF domain J3U87_01730 PF08453 Peptidase family M9 N-terminal J3U87_01730 PF01752 Collagenase J3U87_01735 PF00486 Transcriptional regulatory protein, C terminal J3U87_01735 PF18500 CadC C-terminal domain 1 J3U87_01740 PF00884 Sulfatase J3U87_01745 PF00593 TonB dependent receptor J3U87_01750 PF00593 TonB dependent receptor J3U87_01755 PF13426 PAS domain J3U87_01755 PF00563 EAL domain J3U87_01755 PF00990 Diguanylate cyclase, GGDEF domain J3U87_01755 PF05231 MASE1 J3U87_01755 PF08448 PAS fold J3U87_01755 PF08447 PAS fold J3U87_01775 PF00005 ABC transporter J3U87_01775 PF16326 ABC transporter C-terminal domain J3U87_01775 PF12848 ABC transporter J3U87_01790 PF05922 Peptidase inhibitor I9 J3U87_01790 PF00082 Subtilase family J3U87_01790 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_01815 PF00596 Class II Aldolase and Adducin N-terminal domain J3U87_01820 PF00989 PAS fold J3U87_01820 PF00512 His Kinase A (phospho-acceptor) domain J3U87_01820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_01825 PF00158 Sigma-54 interaction domain J3U87_01825 PF00072 Response regulator receiver domain J3U87_01825 PF02954 Bacterial regulatory protein, Fis family J3U87_01830 PF02954 Bacterial regulatory protein, Fis family J3U87_01830 PF00158 Sigma-54 interaction domain J3U87_01830 PF00072 Response regulator receiver domain J3U87_01835 PF03193 RsgA GTPase J3U87_01845 PF00085 Thioredoxin J3U87_01850 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J3U87_01850 PF00437 Type II/IV secretion system protein J3U87_01860 PF03965 Penicillinase repressor J3U87_01875 PF00873 AcrB/AcrD/AcrF family J3U87_01880 PF01661 Macro domain J3U87_01900 PF01022 Bacterial regulatory protein, arsR family J3U87_01905 PF01339 CheB methylesterase J3U87_01910 PF01695 IstB-like ATP binding protein J3U87_01915 PF00698 Acyl transferase domain J3U87_01915 PF03060 Nitronate monooxygenase J3U87_01920 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_01920 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_01920 PF00550 Phosphopantetheine attachment site J3U87_01920 PF14765 Polyketide synthase dehydratase J3U87_01920 PF08659 KR domain J3U87_01920 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_01920 PF00698 Acyl transferase domain J3U87_01925 PF14765 Polyketide synthase dehydratase J3U87_01925 PF00550 Phosphopantetheine attachment site J3U87_01925 PF08659 KR domain J3U87_01925 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_01925 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_01925 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_01930 PF00550 Phosphopantetheine attachment site J3U87_01930 PF00501 AMP-binding enzyme J3U87_01930 PF13193 AMP-binding enzyme C-terminal domain J3U87_01930 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_01930 PF00668 Condensation domain J3U87_01930 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_01930 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_01930 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_01930 PF08659 KR domain J3U87_01930 PF00668 Condensation domain J3U87_01930 PF13193 AMP-binding enzyme C-terminal domain J3U87_01930 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_01930 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_01930 PF14765 Polyketide synthase dehydratase J3U87_01930 PF08659 KR domain J3U87_01930 PF00550 Phosphopantetheine attachment site J3U87_01930 PF14765 Polyketide synthase dehydratase J3U87_01930 PF00501 AMP-binding enzyme J3U87_01935 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_01935 PF14765 Polyketide synthase dehydratase J3U87_01935 PF00550 Phosphopantetheine attachment site J3U87_01935 PF08659 KR domain J3U87_01935 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_01935 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_01935 PF00668 Condensation domain J3U87_01935 PF13193 AMP-binding enzyme C-terminal domain J3U87_01935 PF00501 AMP-binding enzyme J3U87_01940 PF08241 Methyltransferase domain J3U87_01945 PF00135 Carboxylesterase family J3U87_01960 PF00069 Protein kinase domain J3U87_01960 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_01970 PF12791 Anti-sigma factor N-terminus J3U87_01970 PF07691 PA14 domain J3U87_01980 PF00069 Protein kinase domain J3U87_01980 PF03793 PASTA domain J3U87_01985 PF00072 Response regulator receiver domain J3U87_01985 PF00512 His Kinase A (phospho-acceptor) domain J3U87_01985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_01985 PF00672 HAMP domain J3U87_01985 PF17149 Periplasmic sensor domain found in signal transduction proteins J3U87_01985 PF01627 Hpt domain J3U87_01990 PF13545 Crp-like helix-turn-helix domain J3U87_01990 PF00027 Cyclic nucleotide-binding domain J3U87_02000 PF00588 SpoU rRNA Methylase family J3U87_02005 PF01699 Sodium/calcium exchanger protein J3U87_02010 PF05193 Peptidase M16 inactive domain J3U87_02010 PF00675 Insulinase (Peptidase family M16) J3U87_02015 PF00696 Amino acid kinase family J3U87_02015 PF01472 PUA domain J3U87_02020 PF00171 Aldehyde dehydrogenase family J3U87_02045 PF07690 Major Facilitator Superfamily J3U87_02050 PF18267 Rubredoxin NAD+ reductase C-terminal domain J3U87_02050 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J3U87_02050 PF04324 BFD-like [2Fe-2S] binding domain J3U87_02050 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_02050 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J3U87_02055 PF00355 Rieske [2Fe-2S] domain J3U87_02060 PF04324 BFD-like [2Fe-2S] binding domain J3U87_02060 PF01568 Molydopterin dinucleotide binding domain J3U87_02060 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J3U87_02060 PF00384 Molybdopterin oxidoreductase J3U87_02085 PF00282 Pyridoxal-dependent decarboxylase conserved domain J3U87_02090 PF04101 Glycosyltransferase family 28 C-terminal domain J3U87_02105 PF05128 Domain of unknown function (DUF697) J3U87_02110 PF03061 Thioesterase superfamily J3U87_02135 PF07494 Two component regulator propeller J3U87_02135 PF00072 Response regulator receiver domain J3U87_02135 PF07495 Y_Y_Y domain J3U87_02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_02135 PF12833 Helix-turn-helix domain J3U87_02135 PF00512 His Kinase A (phospho-acceptor) domain J3U87_02145 PF00512 His Kinase A (phospho-acceptor) domain J3U87_02145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_02145 PF00072 Response regulator receiver domain J3U87_02145 PF07495 Y_Y_Y domain J3U87_02145 PF07494 Two component regulator propeller J3U87_02145 PF12833 Helix-turn-helix domain J3U87_02150 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J3U87_02150 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J3U87_02160 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J3U87_02165 PF05188 MutS domain II J3U87_02165 PF01624 MutS domain I J3U87_02165 PF05192 MutS domain III J3U87_02165 PF05190 MutS family domain IV J3U87_02165 PF00488 MutS domain V J3U87_02175 PF00436 Single-strand binding protein family J3U87_02190 PF00005 ABC transporter J3U87_02195 PF01476 LysM domain J3U87_02195 PF00877 NlpC/P60 family J3U87_02215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_02215 PF03466 LysR substrate binding domain J3U87_02225 PF00343 Carbohydrate phosphorylase J3U87_02260 PF00756 Putative esterase J3U87_02265 PF00485 Phosphoribulokinase / Uridine kinase family J3U87_02275 PF01047 MarR family J3U87_02305 PF01928 CYTH domain J3U87_02310 PF00113 Enolase, C-terminal TIM barrel domain J3U87_02310 PF03952 Enolase, N-terminal domain J3U87_02315 PF00849 RNA pseudouridylate synthase J3U87_02320 PF04116 Fatty acid hydroxylase superfamily J3U87_02380 PF01112 Asparaginase J3U87_02390 PF00440 Bacterial regulatory proteins, tetR family J3U87_02390 PF16925 Tetracyclin repressor-like, C-terminal domain J3U87_02405 PF00072 Response regulator receiver domain J3U87_02405 PF00196 Bacterial regulatory proteins, luxR family J3U87_02410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_02410 PF05384 Sensor protein DegS J3U87_02410 PF07730 Histidine kinase J3U87_02415 PF07885 Ion channel J3U87_02415 PF17655 Inward rectifier potassium channel C-terminal domain J3U87_02420 PF00535 Glycosyl transferase family 2 J3U87_02445 PF00005 ABC transporter J3U87_02445 PF02687 FtsX-like permease family J3U87_02445 PF12704 MacB-like periplasmic core domain J3U87_02465 PF00005 ABC transporter J3U87_02485 PF07694 5TMR of 5TMR-LYT J3U87_02485 PF13492 GAF domain J3U87_02485 PF06580 Histidine kinase J3U87_02485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_02490 PF00072 Response regulator receiver domain J3U87_02490 PF04397 LytTr DNA-binding domain J3U87_02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_02495 PF00512 His Kinase A (phospho-acceptor) domain J3U87_02495 PF00989 PAS fold J3U87_02500 PF00072 Response regulator receiver domain J3U87_02500 PF00158 Sigma-54 interaction domain J3U87_02500 PF02954 Bacterial regulatory protein, Fis family J3U87_02535 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_02535 PF03413 Peptidase propeptide and YPEB domain J3U87_02535 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_02535 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_02540 PF03793 PASTA domain J3U87_02540 PF00069 Protein kinase domain J3U87_02550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J3U87_02565 PF07715 TonB-dependent Receptor Plug Domain J3U87_02565 PF00593 TonB dependent receptor J3U87_02570 PF04405 Domain of Unknown function (DUF542) J3U87_02570 PF01814 Hemerythrin HHE cation binding domain J3U87_02580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J3U87_02580 PF00384 Molybdopterin oxidoreductase J3U87_02580 PF01568 Molydopterin dinucleotide binding domain J3U87_02595 PF13247 4Fe-4S dicluster domain J3U87_02610 PF17820 PDZ domain J3U87_02610 PF03572 Peptidase family S41 J3U87_02610 PF01471 Putative peptidoglycan binding domain J3U87_02620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_02620 PF03466 LysR substrate binding domain J3U87_02640 PF00069 Protein kinase domain J3U87_02640 PF03793 PASTA domain J3U87_02655 PF02954 Bacterial regulatory protein, Fis family J3U87_02655 PF00158 Sigma-54 interaction domain J3U87_02655 PF13185 GAF domain J3U87_02725 PF04717 Type VI secretion system, phage-baseplate injector J3U87_02765 PF07694 5TMR of 5TMR-LYT J3U87_02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_02765 PF06580 Histidine kinase J3U87_02770 PF00072 Response regulator receiver domain J3U87_02770 PF04397 LytTr DNA-binding domain J3U87_02775 PF00578 AhpC/TSA family J3U87_02790 PF02424 ApbE family J3U87_02795 PF08769 Sporulation initiation factor Spo0A C terminal J3U87_02795 PF00072 Response regulator receiver domain J3U87_02815 PF03960 ArsC family J3U87_02825 PF00478 IMP dehydrogenase / GMP reductase domain J3U87_02825 PF00571 CBS domain J3U87_02830 PF03104 DNA polymerase family B, exonuclease domain J3U87_02830 PF00136 DNA polymerase family B J3U87_02845 PF01645 Conserved region in glutamate synthase J3U87_02850 PF13460 NAD(P)H-binding J3U87_02855 PF09350 Domain of unknown function (DUF1992) J3U87_02875 PF08443 RimK-like ATP-grasp domain J3U87_02880 PF01118 Semialdehyde dehydrogenase, NAD binding domain J3U87_02880 PF02774 Semialdehyde dehydrogenase, dimerisation domain J3U87_02890 PF00696 Amino acid kinase family J3U87_02895 PF00202 Aminotransferase class-III J3U87_02900 PF02371 Transposase IS116/IS110/IS902 family J3U87_02900 PF01548 Transposase J3U87_02905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J3U87_02905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J3U87_02910 PF01979 Amidohydrolase family J3U87_02930 PF16750 Sensor domain of 2-component histidine kinase J3U87_02930 PF00512 His Kinase A (phospho-acceptor) domain J3U87_02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_02930 PF00672 HAMP domain J3U87_02935 PF00486 Transcriptional regulatory protein, C terminal J3U87_02935 PF00072 Response regulator receiver domain J3U87_02940 PF03793 PASTA domain J3U87_02940 PF00069 Protein kinase domain J3U87_02970 PF03466 LysR substrate binding domain J3U87_02970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_03020 PF00005 ABC transporter J3U87_03020 PF01061 ABC-2 type transporter J3U87_03020 PF00498 FHA domain J3U87_03025 PF00175 Oxidoreductase NAD-binding domain J3U87_03025 PF00970 Oxidoreductase FAD-binding domain J3U87_03025 PF00111 2Fe-2S iron-sulfur cluster binding domain J3U87_03035 PF01435 Peptidase family M48 J3U87_03040 PF01906 Putative heavy-metal-binding J3U87_03045 PF01906 Putative heavy-metal-binding J3U87_03050 PF05544 Proline racemase J3U87_03055 PF02423 Ornithine cyclodeaminase/mu-crystallin family J3U87_03080 PF00578 AhpC/TSA family J3U87_03090 PF00586 AIR synthase related protein, N-terminal domain J3U87_03090 PF02769 AIR synthase related protein, C-terminal domain J3U87_03095 PF05230 MASE2 domain J3U87_03095 PF00990 Diguanylate cyclase, GGDEF domain J3U87_03105 PF00550 Phosphopantetheine attachment site J3U87_03105 PF14765 Polyketide synthase dehydratase J3U87_03105 PF08659 KR domain J3U87_03105 PF08242 Methyltransferase domain J3U87_03105 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_03105 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_03105 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_03115 PF02190 ATP-dependent protease La (LON) substrate-binding domain J3U87_03115 PF05362 Lon protease (S16) C-terminal proteolytic domain J3U87_03115 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_03130 PF10502 Signal peptidase, peptidase S26 J3U87_03140 PF01520 N-acetylmuramoyl-L-alanine amidase J3U87_03140 PF11741 AMIN domain J3U87_03145 PF00691 OmpA family J3U87_03160 PF00072 Response regulator receiver domain J3U87_03160 PF00486 Transcriptional regulatory protein, C terminal J3U87_03170 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_03175 PF00005 ABC transporter J3U87_03180 PF12704 MacB-like periplasmic core domain J3U87_03180 PF02687 FtsX-like permease family J3U87_03180 PF00005 ABC transporter J3U87_03185 PF00005 ABC transporter J3U87_03185 PF12704 MacB-like periplasmic core domain J3U87_03185 PF02687 FtsX-like permease family J3U87_03190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_03230 PF00012 Hsp70 protein J3U87_03285 PF03968 OstA-like protein J3U87_03285 PF04453 LPS transport system D J3U87_03295 PF00069 Protein kinase domain J3U87_03305 PF08525 Opacity-associated protein A N-terminal motif J3U87_03305 PF01476 LysM domain J3U87_03305 PF01551 Peptidase family M23 J3U87_03310 PF02810 SEC-C motif J3U87_03310 PF07517 SecA DEAD-like domain J3U87_03310 PF01043 SecA preprotein cross-linking domain J3U87_03310 PF07516 SecA Wing and Scaffold domain J3U87_03315 PF00571 CBS domain J3U87_03315 PF00478 IMP dehydrogenase / GMP reductase domain J3U87_03330 PF00884 Sulfatase J3U87_03350 PF07715 TonB-dependent Receptor Plug Domain J3U87_03350 PF00593 TonB dependent receptor J3U87_03355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_03355 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J3U87_03360 PF12823 Domain of unknown function (DUF3817) J3U87_03380 PF00485 Phosphoribulokinase / Uridine kinase family J3U87_03400 PF00171 Aldehyde dehydrogenase family J3U87_03405 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J3U87_03405 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J3U87_03415 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_03415 PF00107 Zinc-binding dehydrogenase J3U87_03425 PF00929 Exonuclease J3U87_03430 PF01266 FAD dependent oxidoreductase J3U87_03450 PF02219 Methylenetetrahydrofolate reductase J3U87_03450 PF02574 Homocysteine S-methyltransferase J3U87_03455 PF03618 Kinase/pyrophosphorylase J3U87_03460 PF00756 Putative esterase J3U87_03465 PF00282 Pyridoxal-dependent decarboxylase conserved domain J3U87_03470 PF02634 FdhD/NarQ family J3U87_03480 PF00069 Protein kinase domain J3U87_03480 PF03793 PASTA domain J3U87_03510 PF04304 Protein of unknown function (DUF454) J3U87_03520 PF03793 PASTA domain J3U87_03520 PF00069 Protein kinase domain J3U87_03530 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_03530 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_03530 PF14765 Polyketide synthase dehydratase J3U87_03530 PF00550 Phosphopantetheine attachment site J3U87_03530 PF08659 KR domain J3U87_03530 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_03535 PF00282 Pyridoxal-dependent decarboxylase conserved domain J3U87_03545 PF03062 MBOAT, membrane-bound O-acyltransferase family J3U87_03560 PF00550 Phosphopantetheine attachment site J3U87_03560 PF00668 Condensation domain J3U87_03560 PF13193 AMP-binding enzyme C-terminal domain J3U87_03560 PF00501 AMP-binding enzyme J3U87_03575 PF13537 Glutamine amidotransferase domain J3U87_03575 PF00733 Asparagine synthase J3U87_03580 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_03580 PF00107 Zinc-binding dehydrogenase J3U87_03595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J3U87_03595 PF13360 PQQ-like domain J3U87_03600 PF13360 PQQ-like domain J3U87_03600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J3U87_03615 PF00465 Iron-containing alcohol dehydrogenase J3U87_03625 PF04055 Radical SAM superfamily J3U87_03625 PF06969 HemN C-terminal domain J3U87_03630 PF00072 Response regulator receiver domain J3U87_03630 PF00990 Diguanylate cyclase, GGDEF domain J3U87_03650 PF02621 Menaquinone biosynthesis J3U87_03655 PF00209 Sodium:neurotransmitter symporter family J3U87_03665 PF00171 Aldehyde dehydrogenase family J3U87_03675 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J3U87_03715 PF08361 MAATS-type transcriptional repressor, C-terminal region J3U87_03715 PF00440 Bacterial regulatory proteins, tetR family J3U87_03720 PF00664 ABC transporter transmembrane region J3U87_03720 PF00005 ABC transporter J3U87_03750 PF09308 LuxQ, periplasmic J3U87_03750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_03750 PF00072 Response regulator receiver domain J3U87_03750 PF00512 His Kinase A (phospho-acceptor) domain J3U87_03755 PF00072 Response regulator receiver domain J3U87_03760 PF00072 Response regulator receiver domain J3U87_03765 PF08446 PAS fold J3U87_03765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_03765 PF00512 His Kinase A (phospho-acceptor) domain J3U87_03765 PF00360 Phytochrome region J3U87_03765 PF01590 GAF domain J3U87_03770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_03770 PF03466 LysR substrate binding domain J3U87_03785 PF02798 Glutathione S-transferase, N-terminal domain J3U87_03805 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal J3U87_03805 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal J3U87_03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_03815 PF01627 Hpt domain J3U87_03815 PF02895 Signal transducing histidine kinase, homodimeric domain J3U87_03815 PF09078 CheY binding J3U87_03815 PF01584 CheW-like domain J3U87_03825 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_03845 PF07238 PilZ domain J3U87_03845 PF00069 Protein kinase domain J3U87_03865 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_03870 PF00005 ABC transporter J3U87_03870 PF08402 TOBE domain J3U87_03890 PF04452 RNA methyltransferase J3U87_03895 PF00873 AcrB/AcrD/AcrF family J3U87_03900 PF00873 AcrB/AcrD/AcrF family J3U87_03905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_03910 PF03806 AbgT putative transporter family J3U87_03915 PF03061 Thioesterase superfamily J3U87_03920 PF00226 DnaJ domain J3U87_03920 PF01556 DnaJ C terminal domain J3U87_03920 PF00684 DnaJ central domain J3U87_03925 PF00899 ThiF family J3U87_03930 PF00027 Cyclic nucleotide-binding domain J3U87_03930 PF07885 Ion channel J3U87_03955 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_03955 PF00082 Subtilase family J3U87_03955 PF05922 Peptidase inhibitor I9 J3U87_03960 PF01479 S4 domain J3U87_03960 PF00849 RNA pseudouridylate synthase J3U87_03965 PF00072 Response regulator receiver domain J3U87_03965 PF09308 LuxQ, periplasmic J3U87_03965 PF00512 His Kinase A (phospho-acceptor) domain J3U87_03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_03975 PF01161 Phosphatidylethanolamine-binding protein J3U87_03985 PF03091 CutA1 divalent ion tolerance protein J3U87_04005 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J3U87_04015 PF03023 Lipid II flippase MurJ J3U87_04020 PF01081 KDPG and KHG aldolase J3U87_04025 PF02685 Glucokinase J3U87_04030 PF00920 Dehydratase family J3U87_04035 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J3U87_04040 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J3U87_04040 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J3U87_04050 PF03466 LysR substrate binding domain J3U87_04050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_04060 PF01361 Tautomerase enzyme J3U87_04070 PF00005 ABC transporter J3U87_04080 PF12833 Helix-turn-helix domain J3U87_04090 PF00593 TonB dependent receptor J3U87_04095 PF10502 Signal peptidase, peptidase S26 J3U87_04100 PF00072 Response regulator receiver domain J3U87_04100 PF01627 Hpt domain J3U87_04100 PF00512 His Kinase A (phospho-acceptor) domain J3U87_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04100 PF17149 Periplasmic sensor domain found in signal transduction proteins J3U87_04100 PF00672 HAMP domain J3U87_04105 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J3U87_04110 PF09285 Elongation factor P, C-terminal J3U87_04110 PF08207 Elongation factor P (EF-P) KOW-like domain J3U87_04110 PF01132 Elongation factor P (EF-P) OB domain J3U87_04115 PF08281 Sigma-70, region 4 J3U87_04115 PF04542 Sigma-70 region 2 J3U87_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04140 PF01751 Toprim domain J3U87_04140 PF00204 DNA gyrase B J3U87_04140 PF00986 DNA gyrase B subunit, carboxyl terminus J3U87_04145 PF00521 DNA gyrase/topoisomerase IV, subunit A J3U87_04150 PF00069 Protein kinase domain J3U87_04150 PF03793 PASTA domain J3U87_04155 PF00501 AMP-binding enzyme J3U87_04155 PF13193 AMP-binding enzyme C-terminal domain J3U87_04155 PF00668 Condensation domain J3U87_04155 PF00550 Phosphopantetheine attachment site J3U87_04155 PF00975 Thioesterase domain J3U87_04160 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_04160 PF00668 Condensation domain J3U87_04160 PF00698 Acyl transferase domain J3U87_04160 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_04160 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_04160 PF00550 Phosphopantetheine attachment site J3U87_04165 PF00501 AMP-binding enzyme J3U87_04165 PF13193 AMP-binding enzyme C-terminal domain J3U87_04165 PF00550 Phosphopantetheine attachment site J3U87_04165 PF00668 Condensation domain J3U87_04200 PF06974 Protein of unknown function (DUF1298) J3U87_04200 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain J3U87_04245 PF03190 Protein of unknown function, DUF255 J3U87_04275 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_04275 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_04275 PF03413 Peptidase propeptide and YPEB domain J3U87_04275 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_04280 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_04280 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_04290 PF01926 50S ribosome-binding GTPase J3U87_04290 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J3U87_04310 PF02441 Flavoprotein J3U87_04315 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_04315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J3U87_04325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04325 PF00512 His Kinase A (phospho-acceptor) domain J3U87_04325 PF00672 HAMP domain J3U87_04330 PF00072 Response regulator receiver domain J3U87_04330 PF00486 Transcriptional regulatory protein, C terminal J3U87_04335 PF00593 TonB dependent receptor J3U87_04335 PF07715 TonB-dependent Receptor Plug Domain J3U87_04350 PF02798 Glutathione S-transferase, N-terminal domain J3U87_04360 PF00069 Protein kinase domain J3U87_04360 PF03793 PASTA domain J3U87_04370 PF13193 AMP-binding enzyme C-terminal domain J3U87_04370 PF00501 AMP-binding enzyme J3U87_04375 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J3U87_04375 PF02142 MGS-like domain J3U87_04375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_04380 PF00326 Prolyl oligopeptidase family J3U87_04380 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J3U87_04385 PF00384 Molybdopterin oxidoreductase J3U87_04390 PF03793 PASTA domain J3U87_04390 PF00069 Protein kinase domain J3U87_04395 PF00512 His Kinase A (phospho-acceptor) domain J3U87_04395 PF00072 Response regulator receiver domain J3U87_04395 PF07494 Two component regulator propeller J3U87_04395 PF12833 Helix-turn-helix domain J3U87_04395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04395 PF07495 Y_Y_Y domain J3U87_04410 PF00067 Cytochrome P450 J3U87_04420 PF13411 MerR HTH family regulatory protein J3U87_04420 PF07739 TipAS antibiotic-recognition domain J3U87_04430 PF02463 RecF/RecN/SMC N terminal domain J3U87_04440 PF00069 Protein kinase domain J3U87_04455 PF00069 Protein kinase domain J3U87_04455 PF03793 PASTA domain J3U87_04475 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J3U87_04475 PF18416 N-acetylglucosamine binding protein domain 2 J3U87_04480 PF03793 PASTA domain J3U87_04480 PF00069 Protein kinase domain J3U87_04515 PF02954 Bacterial regulatory protein, Fis family J3U87_04525 PF00593 TonB dependent receptor J3U87_04525 PF07715 TonB-dependent Receptor Plug Domain J3U87_04530 PF00672 HAMP domain J3U87_04530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04530 PF00512 His Kinase A (phospho-acceptor) domain J3U87_04535 PF00486 Transcriptional regulatory protein, C terminal J3U87_04535 PF00072 Response regulator receiver domain J3U87_04545 PF00512 His Kinase A (phospho-acceptor) domain J3U87_04545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04545 PF00672 HAMP domain J3U87_04550 PF00486 Transcriptional regulatory protein, C terminal J3U87_04550 PF00072 Response regulator receiver domain J3U87_04555 PF00158 Sigma-54 interaction domain J3U87_04555 PF02954 Bacterial regulatory protein, Fis family J3U87_04555 PF00072 Response regulator receiver domain J3U87_04590 PF05717 IS66 Orf2 like protein J3U87_04660 PF00069 Protein kinase domain J3U87_04660 PF13360 PQQ-like domain J3U87_04665 PF03413 Peptidase propeptide and YPEB domain J3U87_04665 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_04665 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_04665 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_04665 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_04680 PF01022 Bacterial regulatory protein, arsR family J3U87_04710 PF00486 Transcriptional regulatory protein, C terminal J3U87_04710 PF00072 Response regulator receiver domain J3U87_04715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04715 PF00512 His Kinase A (phospho-acceptor) domain J3U87_04715 PF00672 HAMP domain J3U87_04730 PF00072 Response regulator receiver domain J3U87_04735 PF01627 Hpt domain J3U87_04735 PF00512 His Kinase A (phospho-acceptor) domain J3U87_04735 PF00072 Response regulator receiver domain J3U87_04735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04740 PF08448 PAS fold J3U87_04740 PF00672 HAMP domain J3U87_04740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_04740 PF00512 His Kinase A (phospho-acceptor) domain J3U87_04740 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB J3U87_04745 PF02608 ABC transporter substrate-binding protein PnrA-like J3U87_04750 PF07478 D-ala D-ala ligase C-terminus J3U87_04750 PF01820 D-ala D-ala ligase N-terminus J3U87_04765 PF01619 Proline dehydrogenase J3U87_04770 PF07715 TonB-dependent Receptor Plug Domain J3U87_04770 PF00593 TonB dependent receptor J3U87_04815 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J3U87_04815 PF00400 WD domain, G-beta repeat J3U87_04830 PF01596 O-methyltransferase J3U87_04835 PF00719 Inorganic pyrophosphatase J3U87_04840 PF01218 Coproporphyrinogen III oxidase J3U87_04845 PF04241 Protein of unknown function (DUF423) J3U87_04850 PF00563 EAL domain J3U87_04850 PF03707 Bacterial signalling protein N terminal repeat J3U87_04850 PF00990 Diguanylate cyclase, GGDEF domain J3U87_04855 PF02463 RecF/RecN/SMC N terminal domain J3U87_04865 PF01590 GAF domain J3U87_04865 PF00158 Sigma-54 interaction domain J3U87_04870 PF02627 Carboxymuconolactone decarboxylase family J3U87_04875 PF00578 AhpC/TSA family J3U87_04885 PF01740 STAS domain J3U87_04895 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J3U87_04895 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J3U87_04910 PF00149 Calcineurin-like phosphoesterase J3U87_04940 PF04542 Sigma-70 region 2 J3U87_04940 PF08281 Sigma-70, region 4 J3U87_05065 PF13007 Transposase C of IS166 homeodomain J3U87_05065 PF03050 Transposase IS66 family J3U87_05065 PF13817 IS66 C-terminal element J3U87_05065 PF13005 zinc-finger binding domain of transposase IS66 J3U87_05070 PF00440 Bacterial regulatory proteins, tetR family J3U87_05070 PF16859 Tetracyclin repressor-like, C-terminal domain J3U87_05075 PF12706 Beta-lactamase superfamily domain J3U87_05085 PF00196 Bacterial regulatory proteins, luxR family J3U87_05085 PF00072 Response regulator receiver domain J3U87_05105 PF00664 ABC transporter transmembrane region J3U87_05105 PF00005 ABC transporter J3U87_05115 PF07715 TonB-dependent Receptor Plug Domain J3U87_05115 PF00593 TonB dependent receptor J3U87_05140 PF00501 AMP-binding enzyme J3U87_05140 PF13193 AMP-binding enzyme C-terminal domain J3U87_05140 PF00668 Condensation domain J3U87_05140 PF00550 Phosphopantetheine attachment site J3U87_05150 PF07715 TonB-dependent Receptor Plug Domain J3U87_05150 PF00593 TonB dependent receptor J3U87_05155 PF00474 Sodium:solute symporter family J3U87_05160 PF06165 Glycosyltransferase family 36 J3U87_05160 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J3U87_05165 PF02927 Cellulase N-terminal ig-like domain J3U87_05165 PF00759 Glycosyl hydrolase family 9 J3U87_05215 PF00005 ABC transporter J3U87_05240 PF03466 LysR substrate binding domain J3U87_05240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_05245 PF02371 Transposase IS116/IS110/IS902 family J3U87_05245 PF01548 Transposase J3U87_05260 PF00990 Diguanylate cyclase, GGDEF domain J3U87_05265 PF00069 Protein kinase domain J3U87_05265 PF03793 PASTA domain J3U87_05275 PF01593 Flavin containing amine oxidoreductase J3U87_05285 PF03600 Citrate transporter J3U87_05310 PF00043 Glutathione S-transferase, C-terminal domain J3U87_05310 PF02798 Glutathione S-transferase, N-terminal domain J3U87_05315 PF13302 Acetyltransferase (GNAT) domain J3U87_05340 PF00069 Protein kinase domain J3U87_05370 PF07730 Histidine kinase J3U87_05375 PF00072 Response regulator receiver domain J3U87_05375 PF00196 Bacterial regulatory proteins, luxR family J3U87_05390 PF01488 Shikimate / quinate 5-dehydrogenase J3U87_05390 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J3U87_05390 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J3U87_05395 PF00072 Response regulator receiver domain J3U87_05395 PF00486 Transcriptional regulatory protein, C terminal J3U87_05400 PF00158 Sigma-54 interaction domain J3U87_05400 PF02954 Bacterial regulatory protein, Fis family J3U87_05400 PF00072 Response regulator receiver domain J3U87_05405 PF02811 PHP domain J3U87_05405 PF14579 Helix-hairpin-helix motif J3U87_05405 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J3U87_05405 PF07733 Bacterial DNA polymerase III alpha NTPase domain J3U87_05410 PF00817 impB/mucB/samB family J3U87_05410 PF11799 impB/mucB/samB family C-terminal domain J3U87_05415 PF01726 LexA DNA binding domain J3U87_05415 PF00717 Peptidase S24-like J3U87_05430 PF00512 His Kinase A (phospho-acceptor) domain J3U87_05430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_05490 PF01483 Proprotein convertase P-domain J3U87_05490 PF00082 Subtilase family J3U87_05495 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J3U87_05500 PF05016 ParE toxin of type II toxin-antitoxin system, parDE J3U87_05535 PF00266 Aminotransferase class-V J3U87_05540 PF01565 FAD binding domain J3U87_05540 PF02913 FAD linked oxidases, C-terminal domain J3U87_05545 PF01565 FAD binding domain J3U87_05545 PF02913 FAD linked oxidases, C-terminal domain J3U87_05550 PF02754 Cysteine-rich domain J3U87_05550 PF13183 4Fe-4S dicluster domain J3U87_05565 PF04717 Type VI secretion system, phage-baseplate injector J3U87_05575 PF03527 RHS protein J3U87_05575 PF05593 RHS Repeat J3U87_05590 PF00069 Protein kinase domain J3U87_05590 PF03793 PASTA domain J3U87_05620 PF00152 tRNA synthetases class II (D, K and N) J3U87_05625 PF09285 Elongation factor P, C-terminal J3U87_05625 PF08207 Elongation factor P (EF-P) KOW-like domain J3U87_05625 PF01132 Elongation factor P (EF-P) OB domain J3U87_05650 PF00486 Transcriptional regulatory protein, C terminal J3U87_05650 PF18500 CadC C-terminal domain 1 J3U87_05660 PF01435 Peptidase family M48 J3U87_05675 PF07715 TonB-dependent Receptor Plug Domain J3U87_05675 PF00593 TonB dependent receptor J3U87_05685 PF00486 Transcriptional regulatory protein, C terminal J3U87_05690 PF00005 ABC transporter J3U87_05700 PF04960 Glutaminase J3U87_05705 PF00069 Protein kinase domain J3U87_05705 PF03793 PASTA domain J3U87_05710 PF17820 PDZ domain J3U87_05710 PF02163 Peptidase family M50 J3U87_05715 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J3U87_05715 PF13288 DXP reductoisomerase C-terminal domain J3U87_05715 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J3U87_05720 PF00365 Phosphofructokinase J3U87_05735 PF00485 Phosphoribulokinase / Uridine kinase family J3U87_05745 PF00025 ADP-ribosylation factor family J3U87_05770 PF02347 Glycine cleavage system P-protein J3U87_05775 PF01435 Peptidase family M48 J3U87_05780 PF00873 AcrB/AcrD/AcrF family J3U87_05785 PF13533 Biotin-lipoyl like J3U87_05825 PF00128 Alpha amylase, catalytic domain J3U87_05825 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J3U87_05825 PF02806 Alpha amylase, C-terminal all-beta domain J3U87_05830 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J3U87_05830 PF00128 Alpha amylase, catalytic domain J3U87_05835 PF02446 4-alpha-glucanotransferase J3U87_05865 PF08774 VRR-NUC domain J3U87_05865 PF18081 Fanconi anemia-associated nuclease SAP domain J3U87_05880 PF01380 SIS domain J3U87_05880 PF00571 CBS domain J3U87_05885 PF00793 DAHP synthetase I family J3U87_05890 PF00117 Glutamine amidotransferase class-I J3U87_05890 PF06418 CTP synthase N-terminus J3U87_05895 PF02348 Cytidylyltransferase J3U87_05900 PF01938 TRAM domain J3U87_05900 PF05958 tRNA (Uracil-5-)-methyltransferase J3U87_05905 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J3U87_05905 PF01464 Transglycosylase SLT domain J3U87_05910 PF02075 Crossover junction endodeoxyribonuclease RuvC J3U87_05915 PF01709 Transcriptional regulator J3U87_05920 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_05920 PF00589 Phage integrase family J3U87_05925 PF00274 Fructose-bisphosphate aldolase class-I J3U87_05935 PF01252 Signal peptidase (SPase) II J3U87_05940 PF02779 Transketolase, pyrimidine binding domain J3U87_05940 PF02780 Transketolase, C-terminal domain J3U87_05940 PF00456 Transketolase, thiamine diphosphate binding domain J3U87_05960 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_05960 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_05970 PF00195 Chalcone and stilbene synthases, N-terminal domain J3U87_05970 PF02797 Chalcone and stilbene synthases, C-terminal domain J3U87_06020 PF17209 Hfq protein J3U87_06025 PF13545 Crp-like helix-turn-helix domain J3U87_06025 PF00027 Cyclic nucleotide-binding domain J3U87_06030 PF00378 Enoyl-CoA hydratase/isomerase J3U87_06035 PF04264 YceI-like domain J3U87_06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_06045 PF00512 His Kinase A (phospho-acceptor) domain J3U87_06055 PF07311 Dodecin J3U87_06060 PF05922 Peptidase inhibitor I9 J3U87_06060 PF00082 Subtilase family J3U87_06060 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_06080 PF00535 Glycosyl transferase family 2 J3U87_06095 PF00460 Flagella basal body rod protein J3U87_06100 PF00460 Flagella basal body rod protein J3U87_06100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J3U87_06105 PF02049 Flagellar hook-basal body complex protein FliE J3U87_06110 PF01514 Secretory protein of YscJ/FliF family J3U87_06110 PF08345 Flagellar M-ring protein C-terminal J3U87_06115 PF14841 FliG middle domain J3U87_06115 PF01706 FliG C-terminal domain J3U87_06115 PF14842 FliG N-terminal domain J3U87_06125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3U87_06125 PF18269 T3SS EscN ATPase C-terminal domain J3U87_06125 PF02874 ATP synthase alpha/beta family, beta-barrel domain J3U87_06155 PF00535 Glycosyl transferase family 2 J3U87_06220 PF00593 TonB dependent receptor J3U87_06220 PF07715 TonB-dependent Receptor Plug Domain J3U87_06230 PF13533 Biotin-lipoyl like J3U87_06235 PF00873 AcrB/AcrD/AcrF family J3U87_06250 PF14431 YwqJ-like deaminase J3U87_06250 PF18807 Tripartite Tc toxins repeat J3U87_06260 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_06265 PF01053 Cys/Met metabolism PLP-dependent enzyme J3U87_06280 PF00082 Subtilase family J3U87_06280 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_06280 PF05922 Peptidase inhibitor I9 J3U87_06285 PF01641 SelR domain J3U87_06290 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) J3U87_06305 PF04717 Type VI secretion system, phage-baseplate injector J3U87_06315 PF04717 Type VI secretion system, phage-baseplate injector J3U87_06315 PF06715 Gp5 C-terminal repeat (3 copies) J3U87_06335 PF04134 Protein of unknown function, DUF393 J3U87_06340 PF00672 HAMP domain J3U87_06340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_06340 PF01627 Hpt domain J3U87_06340 PF00072 Response regulator receiver domain J3U87_06340 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_06340 PF00512 His Kinase A (phospho-acceptor) domain J3U87_06345 PF02586 SOS response associated peptidase (SRAP) J3U87_06350 PF00117 Glutamine amidotransferase class-I J3U87_06350 PF00958 GMP synthase C terminal domain J3U87_06350 PF02540 NAD synthase J3U87_06360 PF07963 Prokaryotic N-terminal methylation motif J3U87_06360 PF00114 Pilin (bacterial filament) J3U87_06415 PF14815 NUDIX domain J3U87_06415 PF00730 HhH-GPD superfamily base excision DNA repair protein J3U87_06435 PF06798 PrkA serine protein kinase C-terminal domain J3U87_06435 PF08298 PrkA AAA domain J3U87_06445 PF00501 AMP-binding enzyme J3U87_06450 PF01435 Peptidase family M48 J3U87_06455 PF01810 LysE type translocator J3U87_06475 PF08264 Anticodon-binding domain of tRNA J3U87_06475 PF00133 tRNA synthetases class I (I, L, M and V) J3U87_06475 PF10458 Valyl tRNA synthetase tRNA binding arm J3U87_06490 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J3U87_06490 PF01676 Metalloenzyme superfamily J3U87_06515 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_06515 PF00589 Phage integrase family J3U87_06520 PF13495 Phage integrase, N-terminal SAM-like domain J3U87_06520 PF00589 Phage integrase family J3U87_06545 PF00589 Phage integrase family J3U87_06545 PF13356 Arm DNA-binding domain J3U87_06560 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_06565 PF14785 Maltose transport system permease protein MalF P2 domain J3U87_06565 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_06570 PF01547 Bacterial extracellular solute-binding protein J3U87_06575 PF00005 ABC transporter J3U87_06575 PF17912 MalK OB fold domain J3U87_06580 PF00128 Alpha amylase, catalytic domain J3U87_06580 PF02903 Alpha amylase, N-terminal ig-like domain J3U87_06580 PF16657 Maltogenic Amylase, C-terminal domain J3U87_06585 PF08323 Starch synthase catalytic domain J3U87_06585 PF00534 Glycosyl transferases group 1 J3U87_06590 PF00483 Nucleotidyl transferase J3U87_06590 PF00132 Bacterial transferase hexapeptide (six repeats) J3U87_06595 PF04231 Endonuclease I J3U87_06600 PF00672 HAMP domain J3U87_06600 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_06600 PF00072 Response regulator receiver domain J3U87_06600 PF00512 His Kinase A (phospho-acceptor) domain J3U87_06600 PF01627 Hpt domain J3U87_06600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_06610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J3U87_06610 PF12806 Acetyl-CoA dehydrogenase C-terminal like J3U87_06610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_06610 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_06615 PF13378 Enolase C-terminal domain-like J3U87_06615 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J3U87_06630 PF03527 RHS protein J3U87_06630 PF05593 RHS Repeat J3U87_06635 PF00571 CBS domain J3U87_06635 PF03471 Transporter associated domain J3U87_06640 PF02130 Uncharacterized protein family UPF0054 J3U87_06650 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_06660 PF00381 PTS HPr component phosphorylation site J3U87_06665 PF05524 PEP-utilising enzyme, N-terminal J3U87_06665 PF00391 PEP-utilising enzyme, mobile domain J3U87_06665 PF02896 PEP-utilising enzyme, TIM barrel domain J3U87_06680 PF01554 MatE J3U87_06685 PF01047 MarR family J3U87_06695 PF01541 GIY-YIG catalytic domain J3U87_06705 PF00180 Isocitrate/isopropylmalate dehydrogenase J3U87_06710 PF00694 Aconitase C-terminal domain J3U87_06715 PF00330 Aconitase family (aconitate hydratase) J3U87_06720 PF00682 HMGL-like J3U87_06720 PF08502 LeuA allosteric (dimerisation) domain J3U87_06730 PF03193 RsgA GTPase J3U87_06735 PF00158 Sigma-54 interaction domain J3U87_06735 PF00072 Response regulator receiver domain J3U87_06735 PF02954 Bacterial regulatory protein, Fis family J3U87_06740 PF01553 Acyltransferase J3U87_06790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_06790 PF00512 His Kinase A (phospho-acceptor) domain J3U87_06790 PF01627 Hpt domain J3U87_06790 PF00072 Response regulator receiver domain J3U87_06790 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_06790 PF00672 HAMP domain J3U87_06795 PF01255 Putative undecaprenyl diphosphate synthase J3U87_06805 PF00069 Protein kinase domain J3U87_06805 PF03793 PASTA domain J3U87_06815 PF00561 alpha/beta hydrolase fold J3U87_06820 PF00696 Amino acid kinase family J3U87_06820 PF01842 ACT domain J3U87_06825 PF13180 PDZ domain J3U87_06830 PF02971 Formiminotransferase domain J3U87_06830 PF07837 Formiminotransferase domain, N-terminal subdomain J3U87_06835 PF13180 PDZ domain J3U87_06850 PF00593 TonB dependent receptor J3U87_06860 PF02492 CobW/HypB/UreG, nucleotide-binding domain J3U87_06860 PF07683 Cobalamin synthesis protein cobW C-terminal domain J3U87_06880 PF13180 PDZ domain J3U87_06880 PF03572 Peptidase family S41 J3U87_06895 PF00486 Transcriptional regulatory protein, C terminal J3U87_06895 PF00072 Response regulator receiver domain J3U87_06930 PF08264 Anticodon-binding domain of tRNA J3U87_06930 PF00133 tRNA synthetases class I (I, L, M and V) J3U87_06935 PF00069 Protein kinase domain J3U87_06950 PF00593 TonB dependent receptor J3U87_06950 PF07715 TonB-dependent Receptor Plug Domain J3U87_06955 PF00501 AMP-binding enzyme J3U87_06955 PF01553 Acyltransferase J3U87_06965 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J3U87_06965 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J3U87_06970 PF00753 Metallo-beta-lactamase superfamily J3U87_06995 PF12127 SigmaW regulon antibacterial J3U87_07005 PF01972 Serine dehydrogenase proteinase J3U87_07005 PF01957 NfeD-like C-terminal, partner-binding J3U87_07010 PF17827 PrmC N-terminal domain J3U87_07010 PF05175 Methyltransferase small domain J3U87_07015 PF01464 Transglycosylase SLT domain J3U87_07015 PF00497 Bacterial extracellular solute-binding proteins, family 3 J3U87_07025 PF00561 alpha/beta hydrolase fold J3U87_07030 PF01743 Poly A polymerase head domain J3U87_07030 PF12627 Probable RNA and SrmB- binding site of polymerase A J3U87_07030 PF13735 tRNA nucleotidyltransferase domain 2 putative J3U87_07045 PF01649 Ribosomal protein S20 J3U87_07055 PF00834 Ribulose-phosphate 3 epimerase family J3U87_07060 PF13525 Outer membrane lipoprotein J3U87_07065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J3U87_07065 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_07065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_07075 PF03705 CheR methyltransferase, all-alpha domain J3U87_07075 PF01739 CheR methyltransferase, SAM binding domain J3U87_07080 PF08668 HDOD domain J3U87_07085 PF12072 Domain of unknown function (DUF3552) J3U87_07085 PF00013 KH domain J3U87_07085 PF01966 HD domain J3U87_07100 PF01590 GAF domain J3U87_07100 PF00158 Sigma-54 interaction domain J3U87_07110 PF00069 Protein kinase domain J3U87_07110 PF03793 PASTA domain J3U87_07125 PF01578 Cytochrome C assembly protein J3U87_07125 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J3U87_07135 PF12857 TOBE-like domain J3U87_07135 PF17850 CysA C-terminal regulatory domain J3U87_07135 PF00005 ABC transporter J3U87_07145 PF01578 Cytochrome C assembly protein J3U87_07160 PF00027 Cyclic nucleotide-binding domain J3U87_07165 PF01327 Polypeptide deformylase J3U87_07170 PF00551 Formyl transferase J3U87_07170 PF02911 Formyl transferase, C-terminal domain J3U87_07180 PF07495 Y_Y_Y domain J3U87_07180 PF00512 His Kinase A (phospho-acceptor) domain J3U87_07180 PF12833 Helix-turn-helix domain J3U87_07180 PF00072 Response regulator receiver domain J3U87_07180 PF07494 Two component regulator propeller J3U87_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_07185 PF00586 AIR synthase related protein, N-terminal domain J3U87_07185 PF02769 AIR synthase related protein, C-terminal domain J3U87_07205 PF00005 ABC transporter J3U87_07205 PF13732 Domain of unknown function (DUF4162) J3U87_07215 PF00005 ABC transporter J3U87_07225 PF05128 Domain of unknown function (DUF697) J3U87_07235 PF01425 Amidase J3U87_07240 PF00501 AMP-binding enzyme J3U87_07240 PF13193 AMP-binding enzyme C-terminal domain J3U87_07240 PF00975 Thioesterase domain J3U87_07240 PF00668 Condensation domain J3U87_07240 PF00550 Phosphopantetheine attachment site J3U87_07245 PF00550 Phosphopantetheine attachment site J3U87_07245 PF00668 Condensation domain J3U87_07245 PF13193 AMP-binding enzyme C-terminal domain J3U87_07245 PF00501 AMP-binding enzyme J3U87_07245 PF00975 Thioesterase domain J3U87_07255 PF00550 Phosphopantetheine attachment site J3U87_07255 PF00668 Condensation domain J3U87_07255 PF13193 AMP-binding enzyme C-terminal domain J3U87_07255 PF00501 AMP-binding enzyme J3U87_07260 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_07260 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_07260 PF14765 Polyketide synthase dehydratase J3U87_07260 PF00550 Phosphopantetheine attachment site J3U87_07260 PF08659 KR domain J3U87_07260 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_07260 PF00698 Acyl transferase domain J3U87_07265 PF14765 Polyketide synthase dehydratase J3U87_07265 PF00698 Acyl transferase domain J3U87_07265 PF08659 KR domain J3U87_07265 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_07265 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_07265 PF00550 Phosphopantetheine attachment site J3U87_07265 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_07265 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_07270 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_07270 PF14765 Polyketide synthase dehydratase J3U87_07270 PF00550 Phosphopantetheine attachment site J3U87_07270 PF08659 KR domain J3U87_07270 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_07270 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_07270 PF00698 Acyl transferase domain J3U87_07280 PF00248 Aldo/keto reductase family J3U87_07285 PF01171 PP-loop family J3U87_07300 PF00550 Phosphopantetheine attachment site J3U87_07300 PF13193 AMP-binding enzyme C-terminal domain J3U87_07300 PF00501 AMP-binding enzyme J3U87_07300 PF00975 Thioesterase domain J3U87_07300 PF00668 Condensation domain J3U87_07305 PF13193 AMP-binding enzyme C-terminal domain J3U87_07305 PF00975 Thioesterase domain J3U87_07305 PF00501 AMP-binding enzyme J3U87_07305 PF00668 Condensation domain J3U87_07305 PF00550 Phosphopantetheine attachment site J3U87_07335 PF00296 Luciferase-like monooxygenase J3U87_07340 PF00698 Acyl transferase domain J3U87_07340 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_07340 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_07340 PF00668 Condensation domain J3U87_07340 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_07340 PF00550 Phosphopantetheine attachment site J3U87_07345 PF00899 ThiF family J3U87_07345 PF00581 Rhodanese-like domain J3U87_07365 PF00115 Cytochrome C and Quinol oxidase polypeptide I J3U87_07380 PF13183 4Fe-4S dicluster domain J3U87_07380 PF02754 Cysteine-rich domain J3U87_07400 PF00293 NUDIX domain J3U87_07405 PF02810 SEC-C motif J3U87_07415 PF13533 Biotin-lipoyl like J3U87_07420 PF00873 AcrB/AcrD/AcrF family J3U87_07425 PF02321 Outer membrane efflux protein J3U87_07435 PF00814 Glycoprotease family J3U87_07440 PF01212 Beta-eliminating lyase J3U87_07455 PF06715 Gp5 C-terminal repeat (3 copies) J3U87_07455 PF04717 Type VI secretion system, phage-baseplate injector J3U87_07485 PF00939 Sodium:sulfate symporter transmembrane region J3U87_07490 PF00583 Acetyltransferase (GNAT) family J3U87_07505 PF00069 Protein kinase domain J3U87_07505 PF03793 PASTA domain J3U87_07515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_07515 PF00512 His Kinase A (phospho-acceptor) domain J3U87_07515 PF00672 HAMP domain J3U87_07520 PF00512 His Kinase A (phospho-acceptor) domain J3U87_07520 PF09308 LuxQ, periplasmic J3U87_07520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_07520 PF00072 Response regulator receiver domain J3U87_07525 PF00920 Dehydratase family J3U87_07530 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J3U87_07530 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J3U87_07535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J3U87_07535 PF00205 Thiamine pyrophosphate enzyme, central domain J3U87_07535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J3U87_07545 PF00585 C-terminal regulatory domain of Threonine dehydratase J3U87_07545 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_07580 PF00563 EAL domain J3U87_07580 PF08668 HDOD domain J3U87_07590 PF13193 AMP-binding enzyme C-terminal domain J3U87_07590 PF00668 Condensation domain J3U87_07590 PF00501 AMP-binding enzyme J3U87_07590 PF00550 Phosphopantetheine attachment site J3U87_07610 PF00550 Phosphopantetheine attachment site J3U87_07610 PF00698 Acyl transferase domain J3U87_07610 PF00668 Condensation domain J3U87_07610 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_07610 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_07610 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_07650 PF00072 Response regulator receiver domain J3U87_07650 PF00486 Transcriptional regulatory protein, C terminal J3U87_07655 PF11808 Phosphate regulon sensor protein PhoR J3U87_07655 PF00989 PAS fold J3U87_07655 PF00512 His Kinase A (phospho-acceptor) domain J3U87_07655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_07665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_07665 PF03466 LysR substrate binding domain J3U87_07680 PF02830 V4R domain J3U87_07680 PF06505 Activator of aromatic catabolism J3U87_07680 PF02954 Bacterial regulatory protein, Fis family J3U87_07680 PF00158 Sigma-54 interaction domain J3U87_07690 PF05922 Peptidase inhibitor I9 J3U87_07690 PF00082 Subtilase family J3U87_07700 PF00149 Calcineurin-like phosphoesterase J3U87_07700 PF12320 Type 5 capsule protein repressor C-terminal domain J3U87_07715 PF03372 Endonuclease/Exonuclease/phosphatase family J3U87_07735 PF01494 FAD binding domain J3U87_07745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_07745 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J3U87_07745 PF02142 MGS-like domain J3U87_07750 PF00501 AMP-binding enzyme J3U87_07775 PF00005 ABC transporter J3U87_07775 PF13732 Domain of unknown function (DUF4162) J3U87_07785 PF02310 B12 binding domain J3U87_07785 PF04055 Radical SAM superfamily J3U87_07795 PF13193 AMP-binding enzyme C-terminal domain J3U87_07795 PF00975 Thioesterase domain J3U87_07795 PF00668 Condensation domain J3U87_07795 PF00550 Phosphopantetheine attachment site J3U87_07795 PF00501 AMP-binding enzyme J3U87_07800 PF00550 Phosphopantetheine attachment site J3U87_07800 PF07993 Male sterility protein J3U87_07800 PF13193 AMP-binding enzyme C-terminal domain J3U87_07800 PF00501 AMP-binding enzyme J3U87_07800 PF00668 Condensation domain J3U87_07805 PF00550 Phosphopantetheine attachment site J3U87_07805 PF00501 AMP-binding enzyme J3U87_07805 PF13193 AMP-binding enzyme C-terminal domain J3U87_07805 PF00668 Condensation domain J3U87_07810 PF13193 AMP-binding enzyme C-terminal domain J3U87_07810 PF00668 Condensation domain J3U87_07810 PF07993 Male sterility protein J3U87_07810 PF00550 Phosphopantetheine attachment site J3U87_07810 PF00501 AMP-binding enzyme J3U87_07815 PF00550 Phosphopantetheine attachment site J3U87_07815 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_07815 PF00501 AMP-binding enzyme J3U87_07815 PF00202 Aminotransferase class-III J3U87_07815 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_07815 PF00668 Condensation domain J3U87_07815 PF13193 AMP-binding enzyme C-terminal domain J3U87_07815 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_07820 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain J3U87_07820 PF12706 Beta-lactamase superfamily domain J3U87_07825 PF03621 MbtH-like protein J3U87_07845 PF13193 AMP-binding enzyme C-terminal domain J3U87_07845 PF16177 Acetyl-coenzyme A synthetase N-terminus J3U87_07845 PF00501 AMP-binding enzyme J3U87_07850 PF04209 homogentisate 1,2-dioxygenase J3U87_07855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3U87_07860 PF01037 Lrp/AsnC ligand binding domain J3U87_07865 PF00072 Response regulator receiver domain J3U87_07870 PF01553 Acyltransferase J3U87_07875 PF00501 AMP-binding enzyme J3U87_07875 PF13193 AMP-binding enzyme C-terminal domain J3U87_07880 PF00221 Aromatic amino acid lyase J3U87_07895 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_07895 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_07925 PF00072 Response regulator receiver domain J3U87_07925 PF00486 Transcriptional regulatory protein, C terminal J3U87_07930 PF16527 Two-component sensor protein CpxA, periplasmic domain J3U87_07930 PF00672 HAMP domain J3U87_07930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_07930 PF00512 His Kinase A (phospho-acceptor) domain J3U87_07935 PF12419 SNF2 Helicase protein J3U87_07935 PF00176 SNF2 family N-terminal domain J3U87_07935 PF00271 Helicase conserved C-terminal domain J3U87_07940 PF00300 Histidine phosphatase superfamily (branch 1) J3U87_07940 PF13456 Reverse transcriptase-like J3U87_07945 PF02654 Cobalamin-5-phosphate synthase J3U87_07950 PF02277 Phosphoribosyltransferase J3U87_07955 PF12411 Choline sulfatase enzyme C terminal J3U87_07955 PF00884 Sulfatase J3U87_07960 PF03091 CutA1 divalent ion tolerance protein J3U87_07965 PF01066 CDP-alcohol phosphatidyltransferase J3U87_07985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J3U87_07985 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_07985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_08000 PF01612 3'-5' exonuclease J3U87_08000 PF00476 DNA polymerase family A J3U87_08015 PF17149 Periplasmic sensor domain found in signal transduction proteins J3U87_08015 PF00672 HAMP domain J3U87_08015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_08015 PF00072 Response regulator receiver domain J3U87_08015 PF01627 Hpt domain J3U87_08015 PF00512 His Kinase A (phospho-acceptor) domain J3U87_08025 PF00593 TonB dependent receptor J3U87_08035 PF04185 Phosphoesterase family J3U87_08040 PF00082 Subtilase family J3U87_08040 PF05922 Peptidase inhibitor I9 J3U87_08045 PF00069 Protein kinase domain J3U87_08045 PF03793 PASTA domain J3U87_08055 PF00989 PAS fold J3U87_08055 PF00512 His Kinase A (phospho-acceptor) domain J3U87_08055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_08080 PF17868 AAA lid domain J3U87_08080 PF12592 Protein of unknown function (DUF3763) J3U87_08080 PF07728 AAA domain (dynein-related subfamily) J3U87_08090 PF00144 Beta-lactamase J3U87_08110 PF04509 CheC-like family J3U87_08110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J3U87_08115 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J3U87_08115 PF02154 Flagellar motor switch protein FliM J3U87_08120 PF04545 Sigma-70, region 4 J3U87_08120 PF04542 Sigma-70 region 2 J3U87_08120 PF04539 Sigma-70 region 3 J3U87_08125 PF10609 NUBPL iron-transfer P-loop NTPase J3U87_08130 PF00448 SRP54-type protein, GTPase domain J3U87_08135 PF00771 FHIPEP family J3U87_08140 PF01312 FlhB HrpN YscU SpaS Family J3U87_08145 PF01311 Bacterial export proteins, family 1 J3U87_08150 PF01313 Bacterial export proteins, family 3 J3U87_08155 PF00813 FliP family J3U87_08165 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J3U87_08165 PF16973 Flagellar motor switch protein FliN N-terminal J3U87_08175 PF00460 Flagella basal body rod protein J3U87_08175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J3U87_08175 PF07559 Flagellar basal body protein FlaE J3U87_08180 PF07559 Flagellar basal body protein FlaE J3U87_08180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J3U87_08180 PF00460 Flagella basal body rod protein J3U87_08200 PF16916 Dimerisation domain of Zinc Transporter J3U87_08200 PF01545 Cation efflux family J3U87_08215 PF01554 MatE J3U87_08225 PF02660 Glycerol-3-phosphate acyltransferase J3U87_08230 PF00669 Bacterial flagellin N-terminal helical region J3U87_08230 PF00700 Bacterial flagellin C-terminal helical region J3U87_08245 PF01799 [2Fe-2S] binding domain J3U87_08245 PF00111 2Fe-2S iron-sulfur cluster binding domain J3U87_08265 PF00149 Calcineurin-like phosphoesterase J3U87_08275 PF01979 Amidohydrolase family J3U87_08280 PF00672 HAMP domain J3U87_08280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_08290 PF00027 Cyclic nucleotide-binding domain J3U87_08290 PF13545 Crp-like helix-turn-helix domain J3U87_08295 PF04055 Radical SAM superfamily J3U87_08295 PF13186 Iron-sulfur cluster-binding domain J3U87_08300 PF00266 Aminotransferase class-V J3U87_08305 PF01597 Glycine cleavage H-protein J3U87_08365 PF08447 PAS fold J3U87_08365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_08365 PF08448 PAS fold J3U87_08370 PF00486 Transcriptional regulatory protein, C terminal J3U87_08370 PF00072 Response regulator receiver domain J3U87_08375 PF00990 Diguanylate cyclase, GGDEF domain J3U87_08375 PF03707 Bacterial signalling protein N terminal repeat J3U87_08375 PF00563 EAL domain J3U87_08380 PF00158 Sigma-54 interaction domain J3U87_08380 PF01590 GAF domain J3U87_08380 PF02954 Bacterial regulatory protein, Fis family J3U87_08395 PF00069 Protein kinase domain J3U87_08395 PF03793 PASTA domain J3U87_08425 PF01022 Bacterial regulatory protein, arsR family J3U87_08435 PF06722 Protein of unknown function (DUF1205) J3U87_08440 PF00561 alpha/beta hydrolase fold J3U87_08445 PF08386 TAP-like protein J3U87_08445 PF00561 alpha/beta hydrolase fold J3U87_08455 PF14765 Polyketide synthase dehydratase J3U87_08455 PF00698 Acyl transferase domain J3U87_08455 PF00550 Phosphopantetheine attachment site J3U87_08455 PF08659 KR domain J3U87_08455 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_08455 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_08455 PF00107 Zinc-binding dehydrogenase J3U87_08455 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_08455 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_08460 PF00550 Phosphopantetheine attachment site J3U87_08460 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_08460 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_08460 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_08460 PF08659 KR domain J3U87_08460 PF00698 Acyl transferase domain J3U87_08460 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_08460 PF14765 Polyketide synthase dehydratase J3U87_08465 PF01209 ubiE/COQ5 methyltransferase family J3U87_08470 PF00512 His Kinase A (phospho-acceptor) domain J3U87_08470 PF00072 Response regulator receiver domain J3U87_08470 PF13188 PAS domain J3U87_08470 PF08448 PAS fold J3U87_08470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_08480 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding J3U87_08490 PF00069 Protein kinase domain J3U87_08490 PF07238 PilZ domain J3U87_08500 PF00158 Sigma-54 interaction domain J3U87_08500 PF00072 Response regulator receiver domain J3U87_08500 PF02954 Bacterial regulatory protein, Fis family J3U87_08515 PF13537 Glutamine amidotransferase domain J3U87_08515 PF00733 Asparagine synthase J3U87_08520 PF00072 Response regulator receiver domain J3U87_08520 PF04397 LytTr DNA-binding domain J3U87_08535 PF02785 Biotin carboxylase C-terminal domain J3U87_08535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_08535 PF00289 Biotin carboxylase, N-terminal domain J3U87_08545 PF00698 Acyl transferase domain J3U87_08550 PF13419 Haloacid dehalogenase-like hydrolase J3U87_08555 PF00795 Carbon-nitrogen hydrolase J3U87_08560 PF00155 Aminotransferase class I and II J3U87_08565 PF12697 Alpha/beta hydrolase family J3U87_08580 PF00395 S-layer homology domain J3U87_08595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_08595 PF00512 His Kinase A (phospho-acceptor) domain J3U87_08595 PF12833 Helix-turn-helix domain J3U87_08595 PF07494 Two component regulator propeller J3U87_08595 PF07495 Y_Y_Y domain J3U87_08595 PF00072 Response regulator receiver domain J3U87_08600 PF00072 Response regulator receiver domain J3U87_08600 PF00196 Bacterial regulatory proteins, luxR family J3U87_08615 PF02163 Peptidase family M50 J3U87_08625 PF14685 Tricorn protease PDZ domain J3U87_08625 PF14684 Tricorn protease C1 domain J3U87_08625 PF03572 Peptidase family S41 J3U87_08625 PF07676 WD40-like Beta Propeller Repeat J3U87_08640 PF04337 Protein of unknown function, DUF480 J3U87_08645 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_08650 PF13193 AMP-binding enzyme C-terminal domain J3U87_08650 PF00975 Thioesterase domain J3U87_08650 PF00501 AMP-binding enzyme J3U87_08650 PF00668 Condensation domain J3U87_08650 PF00550 Phosphopantetheine attachment site J3U87_08655 PF00850 Histone deacetylase domain J3U87_08660 PF10415 Fumarase C C-terminus J3U87_08660 PF00206 Lyase J3U87_08685 PF03793 PASTA domain J3U87_08685 PF00069 Protein kinase domain J3U87_08695 PF00072 Response regulator receiver domain J3U87_08695 PF00158 Sigma-54 interaction domain J3U87_08695 PF02954 Bacterial regulatory protein, Fis family J3U87_08700 PF00293 NUDIX domain J3U87_08720 PF00999 Sodium/hydrogen exchanger family J3U87_08735 PF00698 Acyl transferase domain J3U87_08735 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_08735 PF14765 Polyketide synthase dehydratase J3U87_08735 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_08735 PF08659 KR domain J3U87_08735 PF00550 Phosphopantetheine attachment site J3U87_08735 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_08740 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_08740 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_08740 PF08659 KR domain J3U87_08740 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_08740 PF00698 Acyl transferase domain J3U87_08740 PF00550 Phosphopantetheine attachment site J3U87_08740 PF14765 Polyketide synthase dehydratase J3U87_08740 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_08745 PF00698 Acyl transferase domain J3U87_08745 PF00550 Phosphopantetheine attachment site J3U87_08745 PF08659 KR domain J3U87_08745 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_08745 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_08745 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_08745 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_08745 PF14765 Polyketide synthase dehydratase J3U87_08750 PF00698 Acyl transferase domain J3U87_08750 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_08750 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_08750 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_08750 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_08750 PF08659 KR domain J3U87_08750 PF14765 Polyketide synthase dehydratase J3U87_08750 PF00550 Phosphopantetheine attachment site J3U87_08755 PF00483 Nucleotidyl transferase J3U87_08760 PF00471 Ribosomal protein L33 J3U87_08765 PF00497 Bacterial extracellular solute-binding proteins, family 3 J3U87_08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_08765 PF00512 His Kinase A (phospho-acceptor) domain J3U87_08770 PF11849 Domain of unknown function (DUF3369) J3U87_08780 PF01835 MG2 domain J3U87_08780 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J3U87_08780 PF17962 Bacterial macroglobulin domain 6 J3U87_08780 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J3U87_08780 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J3U87_08780 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J3U87_08780 PF07703 Alpha-2-macroglobulin bait region domain J3U87_08780 PF00207 Alpha-2-macroglobulin family J3U87_08795 PF04012 PspA/IM30 family J3U87_08805 PF17863 AAA lid domain J3U87_08805 PF07726 ATPase family associated with various cellular activities (AAA) J3U87_08845 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J3U87_08845 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J3U87_08845 PF10531 SLBB domain J3U87_08855 PF13186 Iron-sulfur cluster-binding domain J3U87_08855 PF04055 Radical SAM superfamily J3U87_08860 PF00664 ABC transporter transmembrane region J3U87_08860 PF00005 ABC transporter J3U87_08875 PF06832 Penicillin-Binding Protein C-terminus Family J3U87_08875 PF00912 Transglycosylase J3U87_08875 PF00905 Penicillin binding protein transpeptidase domain J3U87_08885 PF03476 MOSC N-terminal beta barrel domain J3U87_08885 PF00111 2Fe-2S iron-sulfur cluster binding domain J3U87_08885 PF03473 MOSC domain J3U87_08895 PF00814 Glycoprotease family J3U87_08905 PF14489 QueF-like protein J3U87_08905 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J3U87_08910 PF02978 Signal peptide binding domain J3U87_08910 PF00448 SRP54-type protein, GTPase domain J3U87_08910 PF02881 SRP54-type protein, helical bundle domain J3U87_08915 PF00886 Ribosomal protein S16 J3U87_08925 PF05239 PRC-barrel domain J3U87_08925 PF01782 RimM N-terminal domain J3U87_08930 PF01746 tRNA (Guanine-1)-methyltransferase J3U87_08935 PF09936 SAM-dependent RNA methyltransferase J3U87_08940 PF01245 Ribosomal protein L19 J3U87_08950 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J3U87_08950 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J3U87_08965 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_08965 PF00082 Subtilase family J3U87_08965 PF05922 Peptidase inhibitor I9 J3U87_08970 PF00873 AcrB/AcrD/AcrF family J3U87_08975 PF00873 AcrB/AcrD/AcrF family J3U87_08980 PF13533 Biotin-lipoyl like J3U87_08995 PF00437 Type II/IV secretion system protein J3U87_09005 PF07724 AAA domain (Cdc48 subfamily) J3U87_09005 PF17871 AAA lid domain J3U87_09005 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_09005 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_09005 PF02861 Clp amino terminal domain, pathogenicity island component J3U87_09015 PF00580 UvrD/REP helicase N-terminal domain J3U87_09015 PF13361 UvrD-like helicase C-terminal domain J3U87_09020 PF07715 TonB-dependent Receptor Plug Domain J3U87_09020 PF00593 TonB dependent receptor J3U87_09025 PF03772 Competence protein J3U87_09025 PF13567 Domain of unknown function (DUF4131) J3U87_09025 PF00753 Metallo-beta-lactamase superfamily J3U87_09055 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_09055 PF00589 Phage integrase family J3U87_09065 PF00120 Glutamine synthetase, catalytic domain J3U87_09065 PF03951 Glutamine synthetase, beta-Grasp domain J3U87_09070 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J3U87_09090 PF00300 Histidine phosphatase superfamily (branch 1) J3U87_09095 PF00885 6,7-dimethyl-8-ribityllumazine synthase J3U87_09100 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J3U87_09100 PF00925 GTP cyclohydrolase II J3U87_09105 PF00677 Lumazine binding domain J3U87_09115 PF00072 Response regulator receiver domain J3U87_09115 PF00486 Transcriptional regulatory protein, C terminal J3U87_09125 PF03129 Anticodon binding domain J3U87_09125 PF04073 Aminoacyl-tRNA editing domain J3U87_09125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J3U87_09135 PF00227 Proteasome subunit J3U87_09140 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_09140 PF07724 AAA domain (Cdc48 subfamily) J3U87_09140 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_09145 PF00753 Metallo-beta-lactamase superfamily J3U87_09155 PF13361 UvrD-like helicase C-terminal domain J3U87_09155 PF00580 UvrD/REP helicase N-terminal domain J3U87_09160 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_09165 PF00072 Response regulator receiver domain J3U87_09165 PF00486 Transcriptional regulatory protein, C terminal J3U87_09170 PF00025 ADP-ribosylation factor family J3U87_09175 PF01474 Class-II DAHP synthetase family J3U87_09180 PF01515 Phosphate acetyl/butaryl transferase J3U87_09185 PF02245 Methylpurine-DNA glycosylase (MPG) J3U87_09190 PF03793 PASTA domain J3U87_09190 PF00069 Protein kinase domain J3U87_09200 PF05593 RHS Repeat J3U87_09210 PF18029 Glyoxalase-like domain J3U87_09210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3U87_09215 PF13476 AAA domain J3U87_09225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J3U87_09225 PF13360 PQQ-like domain J3U87_09225 PF01011 PQQ enzyme repeat J3U87_09235 PF13416 Bacterial extracellular solute-binding protein J3U87_09265 PF00005 ABC transporter J3U87_09265 PF08402 TOBE domain J3U87_09275 PF16658 Class II release factor RF3, C-terminal domain J3U87_09275 PF00009 Elongation factor Tu GTP binding domain J3U87_09280 PF00005 ABC transporter J3U87_09280 PF12848 ABC transporter J3U87_09295 PF00691 OmpA family J3U87_09300 PF04052 TolB amino-terminal domain J3U87_09300 PF07676 WD40-like Beta Propeller Repeat J3U87_09310 PF02472 Biopolymer transport protein ExbD/TolR J3U87_09315 PF01618 MotA/TolQ/ExbB proton channel family J3U87_09320 PF01467 Cytidylyltransferase-like J3U87_09325 PF02463 RecF/RecN/SMC N terminal domain J3U87_09330 PF06827 Zinc finger found in FPG and IleRS J3U87_09330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J3U87_09330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J3U87_09340 PF00990 Diguanylate cyclase, GGDEF domain J3U87_09350 PF01281 Ribosomal protein L9, N-terminal domain J3U87_09350 PF03948 Ribosomal protein L9, C-terminal domain J3U87_09355 PF17284 Spermidine synthase tetramerisation domain J3U87_09365 PF00176 SNF2 family N-terminal domain J3U87_09365 PF12419 SNF2 Helicase protein J3U87_09365 PF00271 Helicase conserved C-terminal domain J3U87_09370 PF00486 Transcriptional regulatory protein, C terminal J3U87_09370 PF18500 CadC C-terminal domain 1 J3U87_09385 PF00990 Diguanylate cyclase, GGDEF domain J3U87_09390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_09390 PF00512 His Kinase A (phospho-acceptor) domain J3U87_09390 PF00989 PAS fold J3U87_09390 PF16736 Single Cache-like J3U87_09400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3U87_09405 PF00578 AhpC/TSA family J3U87_09415 PF00990 Diguanylate cyclase, GGDEF domain J3U87_09420 PF01264 Chorismate synthase J3U87_09425 PF00270 DEAD/DEAH box helicase J3U87_09425 PF08494 DEAD/H associated J3U87_09425 PF00271 Helicase conserved C-terminal domain J3U87_09455 PF08496 Peptidase family S49 N-terminal J3U87_09455 PF01343 Peptidase family S49 J3U87_09465 PF01791 DeoC/LacD family aldolase J3U87_09470 PF03372 Endonuclease/Exonuclease/phosphatase family J3U87_09500 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J3U87_09505 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J3U87_09510 PF10141 Single-strand DNA-specific exonuclease, C terminal domain J3U87_09510 PF17768 RecJ OB domain J3U87_09510 PF01368 DHH family J3U87_09510 PF02272 DHHA1 domain J3U87_09520 PF00005 ABC transporter J3U87_09520 PF12399 Branched-chain amino acid ATP-binding cassette transporter J3U87_09525 PF04552 Sigma-54, DNA binding domain J3U87_09525 PF04963 Sigma-54 factor, core binding domain J3U87_09525 PF00309 Sigma-54 factor, Activator interacting domain (AID) J3U87_09530 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J3U87_09535 PF02603 HPr Serine kinase N terminus J3U87_09535 PF07475 HPr Serine kinase C-terminal domain J3U87_09540 PF03793 PASTA domain J3U87_09540 PF00069 Protein kinase domain J3U87_09565 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_09565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J3U87_09570 PF01584 CheW-like domain J3U87_09570 PF00072 Response regulator receiver domain J3U87_09580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_09580 PF00512 His Kinase A (phospho-acceptor) domain J3U87_09585 PF00912 Transglycosylase J3U87_09585 PF00905 Penicillin binding protein transpeptidase domain J3U87_09595 PF03881 Fructosamine kinase J3U87_09600 PF13187 4Fe-4S dicluster domain J3U87_09600 PF01645 Conserved region in glutamate synthase J3U87_09605 PF00205 Thiamine pyrophosphate enzyme, central domain J3U87_09605 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J3U87_09605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J3U87_09610 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_09620 PF00025 ADP-ribosylation factor family J3U87_09630 PF00348 Polyprenyl synthetase J3U87_09635 PF04715 Anthranilate synthase component I, N terminal region J3U87_09635 PF00425 chorismate binding enzyme J3U87_09645 PF00581 Rhodanese-like domain J3U87_09650 PF03702 Anhydro-N-acetylmuramic acid kinase J3U87_09660 PF04389 Peptidase family M28 J3U87_09660 PF02225 PA domain J3U87_09665 PF07685 CobB/CobQ-like glutamine amidotransferase domain J3U87_09685 PF00990 Diguanylate cyclase, GGDEF domain J3U87_09685 PF03707 Bacterial signalling protein N terminal repeat J3U87_09685 PF00563 EAL domain J3U87_09695 PF01551 Peptidase family M23 J3U87_09695 PF10145 Phage-related minor tail protein J3U87_09695 PF01464 Transglycosylase SLT domain J3U87_09700 PF01411 tRNA synthetases class II (A) J3U87_09700 PF02272 DHHA1 domain J3U87_09700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J3U87_09705 PF02657 Fe-S metabolism associated domain J3U87_09715 PF00990 Diguanylate cyclase, GGDEF domain J3U87_09725 PF00437 Type II/IV secretion system protein J3U87_09735 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J3U87_09740 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J3U87_09745 PF01628 HrcA protein C terminal domain J3U87_09750 PF01025 GrpE J3U87_09755 PF00012 Hsp70 protein J3U87_09760 PF01556 DnaJ C terminal domain J3U87_09760 PF00684 DnaJ central domain J3U87_09760 PF00226 DnaJ domain J3U87_09765 PF06463 Molybdenum Cofactor Synthesis C J3U87_09765 PF04055 Radical SAM superfamily J3U87_09780 PF04055 Radical SAM superfamily J3U87_09785 PF02562 PhoH-like protein J3U87_09785 PF13638 PIN domain J3U87_09790 PF00551 Formyl transferase J3U87_09790 PF02911 Formyl transferase, C-terminal domain J3U87_09795 PF01029 NusB family J3U87_09810 PF01252 Signal peptidase (SPase) II J3U87_09815 PF01790 Prolipoprotein diacylglyceryl transferase J3U87_09820 PF01479 S4 domain J3U87_09820 PF00849 RNA pseudouridylate synthase J3U87_09825 PF03975 CheD chemotactic sensory transduction J3U87_09835 PF00072 Response regulator receiver domain J3U87_09855 PF07497 Rho termination factor, RNA-binding domain J3U87_09855 PF07498 Rho termination factor, N-terminal domain J3U87_09855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3U87_09860 PF01926 50S ribosome-binding GTPase J3U87_09865 PF07724 AAA domain (Cdc48 subfamily) J3U87_09865 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_09865 PF06689 ClpX C4-type zinc finger J3U87_09870 PF00574 Clp protease J3U87_09875 PF05697 Bacterial trigger factor protein (TF) J3U87_09875 PF05698 Bacterial trigger factor protein (TF) C-terminus J3U87_09875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J3U87_09900 PF00155 Aminotransferase class I and II J3U87_09910 PF01804 Penicillin amidase J3U87_09925 PF17946 RecC C-terminal domain J3U87_09930 PF12705 PD-(D/E)XK nuclease superfamily J3U87_09930 PF00580 UvrD/REP helicase N-terminal domain J3U87_09930 PF13361 UvrD-like helicase C-terminal domain J3U87_09945 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J3U87_09945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J3U87_09950 PF00158 Sigma-54 interaction domain J3U87_09950 PF02954 Bacterial regulatory protein, Fis family J3U87_09950 PF01590 GAF domain J3U87_09955 PF00909 Ammonium Transporter Family J3U87_09960 PF01645 Conserved region in glutamate synthase J3U87_09960 PF04898 Glutamate synthase central domain J3U87_09960 PF01493 GXGXG motif J3U87_09960 PF00310 Glutamine amidotransferases class-II J3U87_09965 PF03412 Peptidase C39 family J3U87_09965 PF00664 ABC transporter transmembrane region J3U87_09965 PF00005 ABC transporter J3U87_09970 PF13533 Biotin-lipoyl like J3U87_09995 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_09995 PF00107 Zinc-binding dehydrogenase J3U87_10015 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_10050 PF00756 Putative esterase J3U87_10070 PF00962 Adenosine/AMP deaminase J3U87_10090 PF04542 Sigma-70 region 2 J3U87_10090 PF08281 Sigma-70, region 4 J3U87_10100 PF00849 RNA pseudouridylate synthase J3U87_10100 PF01479 S4 domain J3U87_10120 PF00990 Diguanylate cyclase, GGDEF domain J3U87_10120 PF00563 EAL domain J3U87_10120 PF03707 Bacterial signalling protein N terminal repeat J3U87_10125 PF00072 Response regulator receiver domain J3U87_10125 PF04397 LytTr DNA-binding domain J3U87_10130 PF02743 Cache domain J3U87_10130 PF00672 HAMP domain J3U87_10130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_10130 PF06580 Histidine kinase J3U87_10135 PF00005 ABC transporter J3U87_10145 PF00144 Beta-lactamase J3U87_10150 PF03641 Possible lysine decarboxylase J3U87_10155 PF01967 MoaC family J3U87_10165 PF00679 Elongation factor G C-terminus J3U87_10165 PF00009 Elongation factor Tu GTP binding domain J3U87_10165 PF03144 Elongation factor Tu domain 2 J3U87_10165 PF06421 GTP-binding protein LepA C-terminus J3U87_10170 PF00664 ABC transporter transmembrane region J3U87_10170 PF00005 ABC transporter J3U87_10175 PF00342 Phosphoglucose isomerase J3U87_10180 PF08241 Methyltransferase domain J3U87_10190 PF00440 Bacterial regulatory proteins, tetR family J3U87_10195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_10195 PF07495 Y_Y_Y domain J3U87_10195 PF00072 Response regulator receiver domain J3U87_10195 PF07494 Two component regulator propeller J3U87_10195 PF12833 Helix-turn-helix domain J3U87_10195 PF00512 His Kinase A (phospho-acceptor) domain J3U87_10205 PF13478 XdhC Rossmann domain J3U87_10205 PF02625 XdhC and CoxI family J3U87_10215 PF00012 Hsp70 protein J3U87_10220 PF01025 GrpE J3U87_10225 PF01556 DnaJ C terminal domain J3U87_10225 PF00684 DnaJ central domain J3U87_10225 PF00226 DnaJ domain J3U87_10250 PF13537 Glutamine amidotransferase domain J3U87_10250 PF00733 Asparagine synthase J3U87_10270 PF00085 Thioredoxin J3U87_10270 PF02683 Cytochrome C biogenesis protein transmembrane region J3U87_10270 PF11412 Disulphide bond corrector protein DsbC J3U87_10280 PF00155 Aminotransferase class I and II J3U87_10285 PF04055 Radical SAM superfamily J3U87_10285 PF06968 Biotin and Thiamin Synthesis associated domain J3U87_10305 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J3U87_10310 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J3U87_10315 PF01272 Transcription elongation factor, GreA/GreB, C-term J3U87_10315 PF03449 Transcription elongation factor, N-terminal J3U87_10320 PF02574 Homocysteine S-methyltransferase J3U87_10320 PF02219 Methylenetetrahydrofolate reductase J3U87_10330 PF02881 SRP54-type protein, helical bundle domain J3U87_10330 PF00448 SRP54-type protein, GTPase domain J3U87_10345 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_10365 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J3U87_10365 PF00437 Type II/IV secretion system protein J3U87_10380 PF00005 ABC transporter J3U87_10380 PF17760 UvrA interaction domain J3U87_10380 PF17755 UvrA DNA-binding domain J3U87_10385 PF01131 DNA topoisomerase J3U87_10385 PF01396 Topoisomerase DNA binding C4 zinc finger J3U87_10385 PF01751 Toprim domain J3U87_10390 PF02481 DNA recombination-mediator protein A J3U87_10390 PF17782 DprA winged helix domain J3U87_10410 PF01209 ubiE/COQ5 methyltransferase family J3U87_10420 PF03553 Na+/H+ antiporter family J3U87_10430 PF03099 Biotin/lipoate A/B protein ligase family J3U87_10435 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J3U87_10435 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J3U87_10455 PF00005 ABC transporter J3U87_10455 PF12848 ABC transporter J3U87_10500 PF00596 Class II Aldolase and Adducin N-terminal domain J3U87_10515 PF03707 Bacterial signalling protein N terminal repeat J3U87_10515 PF00990 Diguanylate cyclase, GGDEF domain J3U87_10515 PF00563 EAL domain J3U87_10530 PF01694 Rhomboid family J3U87_10540 PF03553 Na+/H+ antiporter family J3U87_10545 PF00069 Protein kinase domain J3U87_10545 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_10550 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J3U87_10550 PF00400 WD domain, G-beta repeat J3U87_10555 PF00311 Phosphoenolpyruvate carboxylase J3U87_10600 PF01112 Asparaginase J3U87_10610 PF00437 Type II/IV secretion system protein J3U87_10615 PF00437 Type II/IV secretion system protein J3U87_10635 PF00501 AMP-binding enzyme J3U87_10640 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_10640 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_10640 PF00550 Phosphopantetheine attachment site J3U87_10640 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_10640 PF00698 Acyl transferase domain J3U87_10640 PF00668 Condensation domain J3U87_10645 PF00486 Transcriptional regulatory protein, C terminal J3U87_10645 PF00072 Response regulator receiver domain J3U87_10650 PF04998 RNA polymerase Rpb1, domain 5 J3U87_10650 PF05000 RNA polymerase Rpb1, domain 4 J3U87_10650 PF04983 RNA polymerase Rpb1, domain 3 J3U87_10650 PF00623 RNA polymerase Rpb1, domain 2 J3U87_10650 PF04997 RNA polymerase Rpb1, domain 1 J3U87_10655 PF04560 RNA polymerase Rpb2, domain 7 J3U87_10655 PF04565 RNA polymerase Rpb2, domain 3 J3U87_10655 PF04561 RNA polymerase Rpb2, domain 2 J3U87_10655 PF04563 RNA polymerase beta subunit J3U87_10655 PF00562 RNA polymerase Rpb2, domain 6 J3U87_10655 PF10385 RNA polymerase beta subunit external 1 domain J3U87_10660 PF16320 Ribosomal protein L7/L12 dimerisation domain J3U87_10660 PF00542 Ribosomal protein L7/L12 C-terminal domain J3U87_10665 PF00466 Ribosomal protein L10 J3U87_10670 PF00687 Ribosomal protein L1p/L10e family J3U87_10675 PF03946 Ribosomal protein L11, N-terminal domain J3U87_10675 PF00298 Ribosomal protein L11, RNA binding domain J3U87_10680 PF00467 KOW motif J3U87_10680 PF02357 Transcription termination factor nusG J3U87_10695 PF03144 Elongation factor Tu domain 2 J3U87_10695 PF03143 Elongation factor Tu C-terminal domain J3U87_10695 PF00009 Elongation factor Tu GTP binding domain J3U87_10730 PF00639 PPIC-type PPIASE domain J3U87_10730 PF09312 SurA N-terminal domain J3U87_10755 PF03793 PASTA domain J3U87_10755 PF00069 Protein kinase domain J3U87_10770 PF00535 Glycosyl transferase family 2 J3U87_10780 PF00202 Aminotransferase class-III J3U87_10815 PF00117 Glutamine amidotransferase class-I J3U87_10820 PF04715 Anthranilate synthase component I, N terminal region J3U87_10820 PF00425 chorismate binding enzyme J3U87_10835 PF01343 Peptidase family S49 J3U87_10840 PF01134 Glucose inhibited division protein A J3U87_10855 PF01084 Ribosomal protein S18 J3U87_10860 PF01250 Ribosomal protein S6 J3U87_10865 PF03030 Inorganic H+ pyrophosphatase J3U87_10870 PF01195 Peptidyl-tRNA hydrolase J3U87_10875 PF01386 Ribosomal L25p family J3U87_10875 PF14693 Ribosomal protein TL5, C-terminal domain J3U87_10880 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J3U87_10880 PF14572 Phosphoribosyl synthetase-associated domain J3U87_10890 PF08544 GHMP kinases C terminal J3U87_10890 PF00288 GHMP kinases N terminal domain J3U87_10905 PF01761 3-dehydroquinate synthase J3U87_10915 PF00072 Response regulator receiver domain J3U87_10915 PF00990 Diguanylate cyclase, GGDEF domain J3U87_10920 PF00248 Aldo/keto reductase family J3U87_10925 PF00005 ABC transporter J3U87_10940 PF05922 Peptidase inhibitor I9 J3U87_10940 PF00082 Subtilase family J3U87_10945 PF07715 TonB-dependent Receptor Plug Domain J3U87_10945 PF00593 TonB dependent receptor J3U87_10955 PF03144 Elongation factor Tu domain 2 J3U87_10955 PF09107 Elongation factor SelB, winged helix J3U87_10955 PF00009 Elongation factor Tu GTP binding domain J3U87_10955 PF09105 Elongation factor SelB, winged helix J3U87_10955 PF09106 Elongation factor SelB, winged helix J3U87_10975 PF12034 Domain of unknown function (DUF3520) J3U87_10975 PF00092 von Willebrand factor type A domain J3U87_10975 PF12450 von Willebrand factor J3U87_11005 PF12169 DNA polymerase III subunits gamma and tau domain III J3U87_11015 PF02575 YbaB/EbfC DNA-binding family J3U87_11020 PF13662 Toprim domain J3U87_11020 PF02132 RecR protein J3U87_11055 PF00005 ABC transporter J3U87_11060 PF04116 Fatty acid hydroxylase superfamily J3U87_11065 PF01189 16S rRNA methyltransferase RsmB/F J3U87_11065 PF01029 NusB family J3U87_11070 PF00072 Response regulator receiver domain J3U87_11070 PF00486 Transcriptional regulatory protein, C terminal J3U87_11080 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J3U87_11110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_11110 PF00512 His Kinase A (phospho-acceptor) domain J3U87_11110 PF00989 PAS fold J3U87_11120 PF01728 FtsJ-like methyltransferase J3U87_11120 PF01479 S4 domain J3U87_11125 PF07963 Prokaryotic N-terminal methylation motif J3U87_11125 PF08334 Type II secretion system (T2SS), protein G J3U87_11130 PF00158 Sigma-54 interaction domain J3U87_11130 PF00072 Response regulator receiver domain J3U87_11130 PF02954 Bacterial regulatory protein, Fis family J3U87_11135 PF00512 His Kinase A (phospho-acceptor) domain J3U87_11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_11140 PF00482 Type II secretion system (T2SS), protein F J3U87_11145 PF00437 Type II/IV secretion system protein J3U87_11150 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J3U87_11150 PF00437 Type II/IV secretion system protein J3U87_11155 PF01202 Shikimate kinase J3U87_11160 PF00289 Biotin carboxylase, N-terminal domain J3U87_11160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_11160 PF02785 Biotin carboxylase C-terminal domain J3U87_11165 PF00364 Biotin-requiring enzyme J3U87_11185 PF00263 Bacterial type II and III secretion system protein J3U87_11185 PF11741 AMIN domain J3U87_11185 PF07660 Secretin and TonB N terminus short domain J3U87_11185 PF03958 Bacterial type II/III secretion system short domain J3U87_11205 PF11104 Type IV pilus assembly protein PilM; J3U87_11215 PF00684 DnaJ central domain J3U87_11215 PF01556 DnaJ C terminal domain J3U87_11215 PF00226 DnaJ domain J3U87_11240 PF01680 SOR/SNZ family J3U87_11245 PF01174 SNO glutamine amidotransferase family J3U87_11250 PF01571 Aminomethyltransferase folate-binding domain J3U87_11260 PF00171 Aldehyde dehydrogenase family J3U87_11270 PF00120 Glutamine synthetase, catalytic domain J3U87_11285 PF01040 UbiA prenyltransferase family J3U87_11295 PF04315 Elongation factor P hydroxylase J3U87_11300 PF14492 Elongation Factor G, domain II J3U87_11300 PF00009 Elongation factor Tu GTP binding domain J3U87_11300 PF00679 Elongation factor G C-terminus J3U87_11300 PF03144 Elongation factor Tu domain 2 J3U87_11305 PF01910 Thiamine-binding protein J3U87_11310 PF04493 Endonuclease V J3U87_11325 PF00069 Protein kinase domain J3U87_11325 PF03793 PASTA domain J3U87_11330 PF00069 Protein kinase domain J3U87_11330 PF03793 PASTA domain J3U87_11335 PF01765 Ribosome recycling factor J3U87_11340 PF00696 Amino acid kinase family J3U87_11345 PF06071 Protein of unknown function (DUF933) J3U87_11345 PF01926 50S ribosome-binding GTPase J3U87_11350 PF13545 Crp-like helix-turn-helix domain J3U87_11350 PF00027 Cyclic nucleotide-binding domain J3U87_11360 PF00072 Response regulator receiver domain J3U87_11365 PF03454 MoeA C-terminal region (domain IV) J3U87_11365 PF03453 MoeA N-terminal region (domain I and II) J3U87_11365 PF00994 Probable molybdopterin binding domain J3U87_11395 PF12848 ABC transporter J3U87_11395 PF00005 ABC transporter J3U87_11400 PF02371 Transposase IS116/IS110/IS902 family J3U87_11400 PF01548 Transposase J3U87_11410 PF03315 Serine dehydratase beta chain J3U87_11410 PF03313 Serine dehydratase alpha chain J3U87_11415 PF08267 Cobalamin-independent synthase, N-terminal domain J3U87_11415 PF01717 Cobalamin-independent synthase, Catalytic domain J3U87_11420 PF00180 Isocitrate/isopropylmalate dehydrogenase J3U87_11420 PF18324 Hypothetical protein TT1725 J3U87_11450 PF00069 Protein kinase domain J3U87_11450 PF03793 PASTA domain J3U87_11460 PF00764 Arginosuccinate synthase J3U87_11465 PF14698 Argininosuccinate lyase C-terminal J3U87_11465 PF00206 Lyase J3U87_11475 PF00072 Response regulator receiver domain J3U87_11475 PF00486 Transcriptional regulatory protein, C terminal J3U87_11495 PF00158 Sigma-54 interaction domain J3U87_11495 PF00072 Response regulator receiver domain J3U87_11495 PF02954 Bacterial regulatory protein, Fis family J3U87_11510 PF00312 Ribosomal protein S15 J3U87_11515 PF00575 S1 RNA binding domain J3U87_11515 PF03725 3' exoribonuclease family, domain 2 J3U87_11515 PF01138 3' exoribonuclease family, domain 1 J3U87_11515 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J3U87_11515 PF00013 KH domain J3U87_11540 PF00221 Aromatic amino acid lyase J3U87_11545 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg J3U87_11545 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II J3U87_11545 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase J3U87_11550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J3U87_11555 PF00072 Response regulator receiver domain J3U87_11555 PF13426 PAS domain J3U87_11555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_11560 PF00753 Metallo-beta-lactamase superfamily J3U87_11560 PF03772 Competence protein J3U87_11565 PF08471 Class II vitamin B12-dependent ribonucleotide reductase J3U87_11565 PF02867 Ribonucleotide reductase, barrel domain J3U87_11590 PF00579 tRNA synthetases class I (W and Y) J3U87_11595 PF01012 Electron transfer flavoprotein domain J3U87_11595 PF00766 Electron transfer flavoprotein FAD-binding domain J3U87_11600 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_11600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J3U87_11605 PF00216 Bacterial DNA-binding protein J3U87_11610 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J3U87_11615 PF00171 Aldehyde dehydrogenase family J3U87_11620 PF08669 Glycine cleavage T-protein C-terminal barrel domain J3U87_11620 PF01571 Aminomethyltransferase folate-binding domain J3U87_11625 PF01597 Glycine cleavage H-protein J3U87_11630 PF08281 Sigma-70, region 4 J3U87_11630 PF04542 Sigma-70 region 2 J3U87_11645 PF13460 NAD(P)H-binding J3U87_11650 PF16697 Inner membrane component of T3SS, cytoplasmic domain J3U87_11665 PF12111 Polyribonucleotide phosphorylase C terminal J3U87_11665 PF00575 S1 RNA binding domain J3U87_11665 PF10150 Ribonuclease E/G family J3U87_11670 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase J3U87_11690 PF00119 ATP synthase A chain J3U87_11695 PF00137 ATP synthase subunit C J3U87_11725 PF04199 Putative cyclase J3U87_11730 PF01066 CDP-alcohol phosphatidyltransferase J3U87_11735 PF18337 RapA N-terminal Tudor like domain J3U87_11735 PF18339 RapA N-terminal Tudor like domain 1 J3U87_11735 PF00176 SNF2 family N-terminal domain J3U87_11735 PF12137 RNA polymerase recycling family C-terminal J3U87_11735 PF00271 Helicase conserved C-terminal domain J3U87_11740 PF02910 Fumarate reductase flavoprotein C-term J3U87_11740 PF00890 FAD binding domain J3U87_11745 PF02445 Quinolinate synthetase A protein J3U87_11750 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J3U87_11750 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J3U87_11755 PF00801 PKD domain J3U87_11755 PF05547 Immune inhibitor A peptidase M6 J3U87_11765 PF00005 ABC transporter J3U87_11770 PF12704 MacB-like periplasmic core domain J3U87_11770 PF02687 FtsX-like permease family J3U87_11770 PF00005 ABC transporter J3U87_11775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J3U87_11775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J3U87_11810 PF00860 Permease family J3U87_11830 PF00498 FHA domain J3U87_11830 PF00005 ABC transporter J3U87_11830 PF01061 ABC-2 type transporter J3U87_11840 PF00069 Protein kinase domain J3U87_11840 PF03793 PASTA domain J3U87_11860 PF02401 LytB protein J3U87_11865 PF01966 HD domain J3U87_11870 PF00266 Aminotransferase class-V J3U87_11875 PF00348 Polyprenyl synthetase J3U87_11880 PF02609 Exonuclease VII small subunit J3U87_11885 PF02601 Exonuclease VII, large subunit J3U87_11885 PF13742 OB-fold nucleic acid binding domain J3U87_11890 PF10672 S-adenosylmethionine-dependent methyltransferase J3U87_11890 PF17785 PUA-like domain J3U87_11895 PF02547 Queuosine biosynthesis protein J3U87_11900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J3U87_11910 PF01965 DJ-1/PfpI family J3U87_11915 PF03976 Polyphosphate kinase 2 (PPK2) J3U87_11925 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J3U87_11925 PF00476 DNA polymerase family A J3U87_11925 PF01612 3'-5' exonuclease J3U87_11925 PF01367 5'-3' exonuclease, C-terminal SAM fold J3U87_11935 PF07694 5TMR of 5TMR-LYT J3U87_11935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_11935 PF13492 GAF domain J3U87_11935 PF06580 Histidine kinase J3U87_11940 PF00072 Response regulator receiver domain J3U87_11940 PF04397 LytTr DNA-binding domain J3U87_11945 PF00881 Nitroreductase family J3U87_11945 PF01996 F420-0:Gamma-glutamyl ligase J3U87_11950 PF00512 His Kinase A (phospho-acceptor) domain J3U87_11950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_11950 PF07494 Two component regulator propeller J3U87_11950 PF00072 Response regulator receiver domain J3U87_11950 PF07495 Y_Y_Y domain J3U87_11950 PF12833 Helix-turn-helix domain J3U87_11955 PF01209 ubiE/COQ5 methyltransferase family J3U87_11975 PF11973 NQRA C-terminal domain J3U87_11975 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J3U87_11980 PF03116 NQR2, RnfD, RnfE family J3U87_11985 PF04205 FMN-binding domain J3U87_11990 PF02508 Rnf-Nqr subunit, membrane protein J3U87_11995 PF02508 Rnf-Nqr subunit, membrane protein J3U87_12000 PF00175 Oxidoreductase NAD-binding domain J3U87_12000 PF00970 Oxidoreductase FAD-binding domain J3U87_12000 PF00111 2Fe-2S iron-sulfur cluster binding domain J3U87_12005 PF02424 ApbE family J3U87_12030 PF00700 Bacterial flagellin C-terminal helical region J3U87_12030 PF00669 Bacterial flagellin N-terminal helical region J3U87_12045 PF04551 GcpE protein J3U87_12055 PF02151 UvrB/uvrC motif J3U87_12055 PF08459 UvrC Helix-hairpin-helix N-terminal J3U87_12055 PF01541 GIY-YIG catalytic domain J3U87_12065 PF00472 RF-1 domain J3U87_12065 PF03462 PCRF domain J3U87_12070 PF17827 PrmC N-terminal domain J3U87_12070 PF05175 Methyltransferase small domain J3U87_12075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J3U87_12080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J3U87_12080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J3U87_12085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3U87_12095 PF01008 Initiation factor 2 subunit family J3U87_12100 PF03749 Sugar fermentation stimulation protein RE domain J3U87_12100 PF17746 SfsA N-terminal OB domain J3U87_12110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J3U87_12120 PF00672 HAMP domain J3U87_12120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_12120 PF00512 His Kinase A (phospho-acceptor) domain J3U87_12125 PF00072 Response regulator receiver domain J3U87_12125 PF00486 Transcriptional regulatory protein, C terminal J3U87_12150 PF01026 TatD related DNase J3U87_12155 PF04055 Radical SAM superfamily J3U87_12165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J3U87_12165 PF02817 e3 binding domain J3U87_12165 PF00364 Biotin-requiring enzyme J3U87_12170 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J3U87_12170 PF04055 Radical SAM superfamily J3U87_12175 PF02666 Phosphatidylserine decarboxylase J3U87_12185 PF00474 Sodium:solute symporter family J3U87_12190 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family J3U87_12210 PF00005 ABC transporter J3U87_12215 PF01420 Type I restriction modification DNA specificity domain J3U87_12220 PF12161 HsdM N-terminal domain J3U87_12220 PF02384 N-6 DNA Methylase J3U87_12225 PF08463 EcoEI R protein C-terminal J3U87_12225 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) J3U87_12225 PF04851 Type III restriction enzyme, res subunit J3U87_12225 PF00271 Helicase conserved C-terminal domain J3U87_12240 PF00989 PAS fold J3U87_12240 PF00512 His Kinase A (phospho-acceptor) domain J3U87_12240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_12255 PF01243 Pyridoxamine 5'-phosphate oxidase J3U87_12255 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J3U87_12260 PF00892 EamA-like transporter family J3U87_12265 PF13439 Glycosyltransferase Family 4 J3U87_12265 PF00534 Glycosyl transferases group 1 J3U87_12285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_12285 PF03466 LysR substrate binding domain J3U87_12290 PF00072 Response regulator receiver domain J3U87_12295 PF00072 Response regulator receiver domain J3U87_12300 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J3U87_12305 PF01256 Carbohydrate kinase J3U87_12305 PF03853 YjeF-related protein N-terminus J3U87_12325 PF01624 MutS domain I J3U87_12325 PF05188 MutS domain II J3U87_12325 PF05192 MutS domain III J3U87_12325 PF05190 MutS family domain IV J3U87_12325 PF00488 MutS domain V J3U87_12330 PF00069 Protein kinase domain J3U87_12330 PF03793 PASTA domain J3U87_12340 PF00158 Sigma-54 interaction domain J3U87_12340 PF02954 Bacterial regulatory protein, Fis family J3U87_12350 PF00593 TonB dependent receptor J3U87_12355 PF00390 Malic enzyme, N-terminal domain J3U87_12355 PF03949 Malic enzyme, NAD binding domain J3U87_12360 PF02310 B12 binding domain J3U87_12360 PF01642 Methylmalonyl-CoA mutase J3U87_12370 PF00120 Glutamine synthetase, catalytic domain J3U87_12370 PF18318 Glutamine synthetase C-terminal domain J3U87_12370 PF12437 Glutamine synthetase type III N terminal J3U87_12375 PF12849 PBP superfamily domain J3U87_12380 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_12385 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_12390 PF00005 ABC transporter J3U87_12395 PF01895 PhoU domain J3U87_12405 PF13673 Acetyltransferase (GNAT) domain J3U87_12410 PF01142 tRNA pseudouridine synthase D (TruD) J3U87_12415 PF01464 Transglycosylase SLT domain J3U87_12415 PF10145 Phage-related minor tail protein J3U87_12415 PF01551 Peptidase family M23 J3U87_12420 PF01230 HIT domain J3U87_12425 PF03793 PASTA domain J3U87_12425 PF00069 Protein kinase domain J3U87_12430 PF01820 D-ala D-ala ligase N-terminus J3U87_12430 PF07478 D-ala D-ala ligase C-terminus J3U87_12435 PF01168 Alanine racemase, N-terminal domain J3U87_12435 PF00842 Alanine racemase, C-terminal domain J3U87_12445 PF02590 Predicted SPOUT methyltransferase J3U87_12455 PF01926 50S ribosome-binding GTPase J3U87_12455 PF01018 GTP1/OBG J3U87_12460 PF01016 Ribosomal L27 protein J3U87_12465 PF00829 Ribosomal prokaryotic L21 protein J3U87_12475 PF00378 Enoyl-CoA hydratase/isomerase J3U87_12480 PF00593 TonB dependent receptor J3U87_12485 PF06689 ClpX C4-type zinc finger J3U87_12485 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_12485 PF07724 AAA domain (Cdc48 subfamily) J3U87_12505 PF00700 Bacterial flagellin C-terminal helical region J3U87_12505 PF00669 Bacterial flagellin N-terminal helical region J3U87_12515 PF07196 Flagellin hook IN motif J3U87_12515 PF02465 Flagellar hook-associated protein 2 N-terminus J3U87_12515 PF07195 Flagellar hook-associated protein 2 C-terminus J3U87_12520 PF01434 Peptidase family M41 J3U87_12520 PF17862 AAA+ lid domain J3U87_12520 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_12525 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J3U87_12555 PF02472 Biopolymer transport protein ExbD/TolR J3U87_12565 PF01618 MotA/TolQ/ExbB proton channel family J3U87_12570 PF00873 AcrB/AcrD/AcrF family J3U87_12575 PF00873 AcrB/AcrD/AcrF family J3U87_12580 PF13533 Biotin-lipoyl like J3U87_12590 PF00072 Response regulator receiver domain J3U87_12590 PF02954 Bacterial regulatory protein, Fis family J3U87_12590 PF00158 Sigma-54 interaction domain J3U87_12600 PF13581 Histidine kinase-like ATPase domain J3U87_12605 PF01740 STAS domain J3U87_12610 PF01725 Ham1 family J3U87_12615 PF01138 3' exoribonuclease family, domain 1 J3U87_12615 PF03725 3' exoribonuclease family, domain 2 J3U87_12620 PF01177 Asp/Glu/Hydantoin racemase J3U87_12630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J3U87_12630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J3U87_12635 PF00578 AhpC/TSA family J3U87_12635 PF10417 C-terminal domain of 1-Cys peroxiredoxin J3U87_12640 PF04434 SWIM zinc finger J3U87_12645 PF00176 SNF2 family N-terminal domain J3U87_12645 PF00271 Helicase conserved C-terminal domain J3U87_12645 PF12419 SNF2 Helicase protein J3U87_12665 PF01063 Amino-transferase class IV J3U87_12675 PF01926 50S ribosome-binding GTPase J3U87_12675 PF13167 GTP-binding GTPase N-terminal J3U87_12675 PF16360 GTP-binding GTPase Middle Region J3U87_12680 PF01119 DNA mismatch repair protein, C-terminal domain J3U87_12680 PF08676 MutL C terminal dimerisation domain J3U87_12690 PF00072 Response regulator receiver domain J3U87_12690 PF00486 Transcriptional regulatory protein, C terminal J3U87_12695 PF00512 His Kinase A (phospho-acceptor) domain J3U87_12695 PF00989 PAS fold J3U87_12695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_12695 PF16736 Single Cache-like J3U87_12705 PF00588 SpoU rRNA Methylase family J3U87_12710 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J3U87_12730 PF01979 Amidohydrolase family J3U87_12740 PF02325 YGGT family J3U87_12745 PF01168 Alanine racemase, N-terminal domain J3U87_12775 PF01235 Sodium:alanine symporter family J3U87_12785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_12785 PF03466 LysR substrate binding domain J3U87_12790 PF10531 SLBB domain J3U87_12815 PF00005 ABC transporter J3U87_12840 PF02563 Polysaccharide biosynthesis/export protein J3U87_12840 PF10531 SLBB domain J3U87_12840 PF18412 Outer-membrane lipoprotein Wza C-terminal domain J3U87_12860 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_12860 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_12860 PF01483 Proprotein convertase P-domain J3U87_12860 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_12870 PF13632 Glycosyl transferase family group 2 J3U87_12870 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J3U87_12880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J3U87_12880 PF06827 Zinc finger found in FPG and IleRS J3U87_12885 PF00356 Bacterial regulatory proteins, lacI family J3U87_12895 PF16697 Inner membrane component of T3SS, cytoplasmic domain J3U87_12900 PF03793 PASTA domain J3U87_12900 PF00069 Protein kinase domain J3U87_12905 PF02954 Bacterial regulatory protein, Fis family J3U87_12905 PF00072 Response regulator receiver domain J3U87_12905 PF00158 Sigma-54 interaction domain J3U87_12930 PF00512 His Kinase A (phospho-acceptor) domain J3U87_12930 PF00989 PAS fold J3U87_12930 PF13188 PAS domain J3U87_12930 PF13426 PAS domain J3U87_12930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_12935 PF02824 TGS domain J3U87_12935 PF04607 Region found in RelA / SpoT proteins J3U87_12935 PF13291 ACT domain J3U87_12940 PF02355 Protein export membrane protein J3U87_12940 PF07549 SecD/SecF GG Motif J3U87_12945 PF02355 Protein export membrane protein J3U87_12945 PF07549 SecD/SecF GG Motif J3U87_12950 PF02699 Preprotein translocase subunit J3U87_12955 PF01702 Queuine tRNA-ribosyltransferase J3U87_12965 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J3U87_12970 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J3U87_12970 PF00437 Type II/IV secretion system protein J3U87_12975 PF00482 Type II secretion system (T2SS), protein F J3U87_12980 PF08334 Type II secretion system (T2SS), protein G J3U87_12980 PF07963 Prokaryotic N-terminal methylation motif J3U87_13015 PF03958 Bacterial type II/III secretion system short domain J3U87_13015 PF00263 Bacterial type II and III secretion system protein J3U87_13030 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J3U87_13040 PF00158 Sigma-54 interaction domain J3U87_13040 PF01590 GAF domain J3U87_13040 PF02954 Bacterial regulatory protein, Fis family J3U87_13045 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_13045 PF07724 AAA domain (Cdc48 subfamily) J3U87_13045 PF17871 AAA lid domain J3U87_13045 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_13050 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J3U87_13070 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J3U87_13095 PF14331 ImcF-related N-terminal domain J3U87_13095 PF06744 Type VI secretion protein IcmF C-terminal J3U87_13095 PF06761 Intracellular multiplication and human macrophage-killing J3U87_13110 PF00486 Transcriptional regulatory protein, C terminal J3U87_13110 PF00072 Response regulator receiver domain J3U87_13115 PF00989 PAS fold J3U87_13115 PF16736 Single Cache-like J3U87_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_13115 PF00512 His Kinase A (phospho-acceptor) domain J3U87_13120 PF07715 TonB-dependent Receptor Plug Domain J3U87_13120 PF00593 TonB dependent receptor J3U87_13130 PF02223 Thymidylate kinase J3U87_13135 PF12169 DNA polymerase III subunits gamma and tau domain III J3U87_13135 PF12170 DNA polymerase III tau subunit V interacting with alpha J3U87_13145 PF01351 Ribonuclease HII J3U87_13160 PF00557 Metallopeptidase family M24 J3U87_13195 PF10672 S-adenosylmethionine-dependent methyltransferase J3U87_13195 PF17785 PUA-like domain J3U87_13200 PF00156 Phosphoribosyl transferase domain J3U87_13205 PF00708 Acylphosphatase J3U87_13210 PF07715 TonB-dependent Receptor Plug Domain J3U87_13210 PF00593 TonB dependent receptor J3U87_13220 PF00696 Amino acid kinase family J3U87_13220 PF01842 ACT domain J3U87_13220 PF13840 ACT domain J3U87_13220 PF00742 Homoserine dehydrogenase J3U87_13220 PF03447 Homoserine dehydrogenase, NAD binding domain J3U87_13225 PF04273 Putative phosphatase (DUF442) J3U87_13225 PF00753 Metallo-beta-lactamase superfamily J3U87_13230 PF01925 Sulfite exporter TauE/SafE J3U87_13235 PF03190 Protein of unknown function, DUF255 J3U87_13240 PF00698 Acyl transferase domain J3U87_13245 PF00664 ABC transporter transmembrane region J3U87_13245 PF00005 ABC transporter J3U87_13255 PF00550 Phosphopantetheine attachment site J3U87_13255 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_13255 PF08659 KR domain J3U87_13255 PF08242 Methyltransferase domain J3U87_13255 PF14765 Polyketide synthase dehydratase J3U87_13255 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_13255 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_13265 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_13265 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_13265 PF08659 KR domain J3U87_13265 PF08242 Methyltransferase domain J3U87_13265 PF00550 Phosphopantetheine attachment site J3U87_13265 PF14765 Polyketide synthase dehydratase J3U87_13265 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_13270 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_13270 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_13270 PF08659 KR domain J3U87_13270 PF08242 Methyltransferase domain J3U87_13270 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_13270 PF00550 Phosphopantetheine attachment site J3U87_13270 PF14765 Polyketide synthase dehydratase J3U87_13270 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_13270 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_13270 PF08242 Methyltransferase domain J3U87_13270 PF00550 Phosphopantetheine attachment site J3U87_13270 PF14765 Polyketide synthase dehydratase J3U87_13270 PF08659 KR domain J3U87_13270 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_13275 PF00550 Phosphopantetheine attachment site J3U87_13275 PF08242 Methyltransferase domain J3U87_13275 PF14765 Polyketide synthase dehydratase J3U87_13275 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_13275 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_13275 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_13275 PF08659 KR domain J3U87_13280 PF13193 AMP-binding enzyme C-terminal domain J3U87_13280 PF08659 KR domain J3U87_13280 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_13280 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_13280 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_13280 PF00668 Condensation domain J3U87_13280 PF00501 AMP-binding enzyme J3U87_13280 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_13280 PF00550 Phosphopantetheine attachment site J3U87_13280 PF08659 KR domain J3U87_13280 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_13280 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_13280 PF00668 Condensation domain J3U87_13280 PF13193 AMP-binding enzyme C-terminal domain J3U87_13280 PF14765 Polyketide synthase dehydratase J3U87_13280 PF00501 AMP-binding enzyme J3U87_13280 PF14765 Polyketide synthase dehydratase J3U87_13280 PF00550 Phosphopantetheine attachment site J3U87_13285 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_13285 PF14765 Polyketide synthase dehydratase J3U87_13285 PF08659 KR domain J3U87_13285 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_13285 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_13285 PF00550 Phosphopantetheine attachment site J3U87_13300 PF03033 Glycosyltransferase family 28 N-terminal domain J3U87_13310 PF16861 Carbamoyltransferase C-terminus J3U87_13310 PF02543 Carbamoyltransferase N-terminus J3U87_13315 PF03793 PASTA domain J3U87_13315 PF00069 Protein kinase domain J3U87_13325 PF00534 Glycosyl transferases group 1 J3U87_13325 PF13439 Glycosyltransferase Family 4 J3U87_13330 PF01569 PAP2 superfamily J3U87_13335 PF07676 WD40-like Beta Propeller Repeat J3U87_13335 PF03572 Peptidase family S41 J3U87_13335 PF14685 Tricorn protease PDZ domain J3U87_13335 PF14684 Tricorn protease C1 domain J3U87_13340 PF12704 MacB-like periplasmic core domain J3U87_13340 PF02687 FtsX-like permease family J3U87_13345 PF12704 MacB-like periplasmic core domain J3U87_13345 PF00005 ABC transporter J3U87_13345 PF02687 FtsX-like permease family J3U87_13350 PF00512 His Kinase A (phospho-acceptor) domain J3U87_13350 PF00989 PAS fold J3U87_13350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_13355 PF00158 Sigma-54 interaction domain J3U87_13355 PF02954 Bacterial regulatory protein, Fis family J3U87_13355 PF00072 Response regulator receiver domain J3U87_13365 PF00474 Sodium:solute symporter family J3U87_13370 PF00480 ROK family J3U87_13375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J3U87_13395 PF00962 Adenosine/AMP deaminase J3U87_13400 PF13533 Biotin-lipoyl like J3U87_13405 PF00873 AcrB/AcrD/AcrF family J3U87_13410 PF00873 AcrB/AcrD/AcrF family J3U87_13420 PF00535 Glycosyl transferase family 2 J3U87_13425 PF13426 PAS domain J3U87_13425 PF13188 PAS domain J3U87_13425 PF00989 PAS fold J3U87_13425 PF00512 His Kinase A (phospho-acceptor) domain J3U87_13425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_13430 PF00069 Protein kinase domain J3U87_13440 PF01557 Fumarylacetoacetate (FAA) hydrolase family J3U87_13450 PF00155 Aminotransferase class I and II J3U87_13450 PF00392 Bacterial regulatory proteins, gntR family J3U87_13490 PF00440 Bacterial regulatory proteins, tetR family J3U87_13505 PF00563 EAL domain J3U87_13505 PF00990 Diguanylate cyclase, GGDEF domain J3U87_13505 PF03707 Bacterial signalling protein N terminal repeat J3U87_13510 PF03793 PASTA domain J3U87_13510 PF00069 Protein kinase domain J3U87_13515 PF01713 Smr domain J3U87_13515 PF00488 MutS domain V J3U87_13520 PF03169 OPT oligopeptide transporter protein J3U87_13540 PF02779 Transketolase, pyrimidine binding domain J3U87_13540 PF02780 Transketolase, C-terminal domain J3U87_13545 PF00676 Dehydrogenase E1 component J3U87_13560 PF01209 ubiE/COQ5 methyltransferase family J3U87_13565 PF16363 GDP-mannose 4,6 dehydratase J3U87_13585 PF16363 GDP-mannose 4,6 dehydratase J3U87_13590 PF01370 NAD dependent epimerase/dehydratase family J3U87_13595 PF00923 Transaldolase/Fructose-6-phosphate aldolase J3U87_13605 PF13580 SIS domain J3U87_13640 PF16861 Carbamoyltransferase C-terminus J3U87_13640 PF02543 Carbamoyltransferase N-terminus J3U87_13665 PF16363 GDP-mannose 4,6 dehydratase J3U87_13675 PF00728 Glycosyl hydrolase family 20, catalytic domain J3U87_13675 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain J3U87_13675 PF03173 Putative carbohydrate binding domain J3U87_13675 PF02838 Glycosyl hydrolase family 20, domain 2 J3U87_13680 PF01047 MarR family J3U87_13680 PF00480 ROK family J3U87_13690 PF00400 WD domain, G-beta repeat J3U87_13690 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J3U87_13695 PF07715 TonB-dependent Receptor Plug Domain J3U87_13695 PF00593 TonB dependent receptor J3U87_13705 PF06483 Chitinase C J3U87_13705 PF00704 Glycosyl hydrolases family 18 J3U87_13715 PF00456 Transketolase, thiamine diphosphate binding domain J3U87_13720 PF02779 Transketolase, pyrimidine binding domain J3U87_13720 PF02780 Transketolase, C-terminal domain J3U87_13725 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_13725 PF18603 L-amino acid ligase C-terminal domain 2 J3U87_13735 PF02938 GAD domain J3U87_13735 PF00152 tRNA synthetases class II (D, K and N) J3U87_13735 PF01336 OB-fold nucleic acid binding domain J3U87_13755 PF02618 YceG-like family J3U87_13765 PF14824 Sirohaem biosynthesis protein central J3U87_13765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J3U87_13765 PF10414 Sirohaem synthase dimerisation region J3U87_13770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J3U87_13770 PF14824 Sirohaem biosynthesis protein central J3U87_13770 PF10414 Sirohaem synthase dimerisation region J3U87_13775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J3U87_13775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J3U87_13780 PF00009 Elongation factor Tu GTP binding domain J3U87_13785 PF01507 Phosphoadenosine phosphosulfate reductase family J3U87_13795 PF01507 Phosphoadenosine phosphosulfate reductase family J3U87_13800 PF03477 ATP cone domain J3U87_13815 PF00881 Nitroreductase family J3U87_13820 PF00459 Inositol monophosphatase family J3U87_13825 PF00990 Diguanylate cyclase, GGDEF domain J3U87_13830 PF04344 Chemotaxis phosphatase, CheZ J3U87_13835 PF00873 AcrB/AcrD/AcrF family J3U87_13850 PF16123 Hydroxyacylglutathione hydrolase C-terminus J3U87_13850 PF00753 Metallo-beta-lactamase superfamily J3U87_13860 PF00072 Response regulator receiver domain J3U87_13865 PF01627 Hpt domain J3U87_13865 PF00072 Response regulator receiver domain J3U87_13865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_13865 PF00512 His Kinase A (phospho-acceptor) domain J3U87_13880 PF14748 Pyrroline-5-carboxylate reductase dimerisation J3U87_13880 PF03807 NADP oxidoreductase coenzyme F420-dependent J3U87_13885 PF16198 tRNA pseudouridylate synthase B C-terminal domain J3U87_13885 PF01509 TruB family pseudouridylate synthase (N terminal domain) J3U87_13890 PF02033 Ribosome-binding factor A J3U87_13895 PF00009 Elongation factor Tu GTP binding domain J3U87_13895 PF03144 Elongation factor Tu domain 2 J3U87_13895 PF11987 Translation-initiation factor 2 J3U87_13895 PF04760 Translation initiation factor IF-2, N-terminal region J3U87_13900 PF00575 S1 RNA binding domain J3U87_13900 PF08529 NusA N-terminal domain J3U87_13900 PF13184 NusA-like KH domain J3U87_13905 PF17384 RimP C-terminal SH3 domain J3U87_13905 PF02576 RimP N-terminal domain J3U87_13930 PF00497 Bacterial extracellular solute-binding proteins, family 3 J3U87_13930 PF00512 His Kinase A (phospho-acceptor) domain J3U87_13930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_13935 PF00158 Sigma-54 interaction domain J3U87_13935 PF02954 Bacterial regulatory protein, Fis family J3U87_13935 PF00072 Response regulator receiver domain J3U87_13940 PF02502 Ribose/Galactose Isomerase J3U87_13955 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J3U87_13960 PF17674 HHH domain J3U87_13960 PF00575 S1 RNA binding domain J3U87_13960 PF09371 Tex-like protein N-terminal domain J3U87_13960 PF16921 Tex protein YqgF-like domain J3U87_13965 PF00132 Bacterial transferase hexapeptide (six repeats) J3U87_13965 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J3U87_13970 PF07977 FabA-like domain J3U87_13975 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J3U87_13975 PF00132 Bacterial transferase hexapeptide (six repeats) J3U87_13985 PF07244 Surface antigen variable number repeat J3U87_13985 PF01103 Surface antigen J3U87_13990 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_13990 PF02861 Clp amino terminal domain, pathogenicity island component J3U87_13990 PF17871 AAA lid domain J3U87_13990 PF07724 AAA domain (Cdc48 subfamily) J3U87_13990 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_13995 PF00005 ABC transporter J3U87_14000 PF02687 FtsX-like permease family J3U87_14000 PF12704 MacB-like periplasmic core domain J3U87_14005 PF01336 OB-fold nucleic acid binding domain J3U87_14005 PF00152 tRNA synthetases class II (D, K and N) J3U87_14015 PF03167 Uracil DNA glycosylase superfamily J3U87_14020 PF01964 Radical SAM ThiC family J3U87_14020 PF13667 ThiC-associated domain J3U87_14025 PF01266 FAD dependent oxidoreductase J3U87_14035 PF05690 Thiazole biosynthesis protein ThiG J3U87_14040 PF02581 Thiamine monophosphate synthase J3U87_14050 PF03707 Bacterial signalling protein N terminal repeat J3U87_14050 PF00990 Diguanylate cyclase, GGDEF domain J3U87_14050 PF00563 EAL domain J3U87_14055 PF00072 Response regulator receiver domain J3U87_14070 PF02621 Menaquinone biosynthesis J3U87_14075 PF00795 Carbon-nitrogen hydrolase J3U87_14080 PF00676 Dehydrogenase E1 component J3U87_14085 PF02779 Transketolase, pyrimidine binding domain J3U87_14085 PF02780 Transketolase, C-terminal domain J3U87_14095 PF00849 RNA pseudouridylate synthase J3U87_14095 PF01479 S4 domain J3U87_14100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J3U87_14145 PF13180 PDZ domain J3U87_14145 PF17820 PDZ domain J3U87_14155 PF09190 DALR domain J3U87_14155 PF01406 tRNA synthetases class I (C) catalytic domain J3U87_14160 PF02698 DUF218 domain J3U87_14190 PF01966 HD domain J3U87_14205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J3U87_14225 PF00069 Protein kinase domain J3U87_14225 PF03793 PASTA domain J3U87_14245 PF09186 Domain of unknown function (DUF1949) J3U87_14245 PF01205 Uncharacterized protein family UPF0029 J3U87_14250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J3U87_14250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J3U87_14255 PF01430 Hsp33 protein J3U87_14265 PF12804 MobA-like NTP transferase domain J3U87_14265 PF00132 Bacterial transferase hexapeptide (six repeats) J3U87_14280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J3U87_14280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J3U87_14285 PF00069 Protein kinase domain J3U87_14285 PF03793 PASTA domain J3U87_14290 PF02637 GatB domain J3U87_14290 PF02934 GatB/GatE catalytic domain J3U87_14305 PF00005 ABC transporter J3U87_14310 PF02405 Permease MlaE J3U87_14320 PF08275 DNA primase catalytic core, N-terminal domain J3U87_14320 PF10410 DnaB-helicase binding domain of primase J3U87_14320 PF01807 CHC2 zinc finger J3U87_14335 PF00171 Aldehyde dehydrogenase family J3U87_14340 PF00248 Aldo/keto reductase family J3U87_14345 PF00207 Alpha-2-macroglobulin family J3U87_14345 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J3U87_14345 PF07703 Alpha-2-macroglobulin bait region domain J3U87_14345 PF01835 MG2 domain J3U87_14360 PF03109 ABC1 family J3U87_14365 PF02769 AIR synthase related protein, C-terminal domain J3U87_14365 PF00586 AIR synthase related protein, N-terminal domain J3U87_14370 PF01924 Hydrogenase formation hypA family J3U87_14375 PF01455 HupF/HypC family J3U87_14380 PF07503 HypF finger J3U87_14380 PF01300 Telomere recombination J3U87_14380 PF17788 HypF Kae1-like domain J3U87_14380 PF00708 Acylphosphatase J3U87_14385 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA J3U87_14400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J3U87_14405 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B J3U87_14420 PF00391 PEP-utilising enzyme, mobile domain J3U87_14420 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J3U87_14420 PF02896 PEP-utilising enzyme, TIM barrel domain J3U87_14425 PF00501 AMP-binding enzyme J3U87_14425 PF13193 AMP-binding enzyme C-terminal domain J3U87_14430 PF00676 Dehydrogenase E1 component J3U87_14435 PF00364 Biotin-requiring enzyme J3U87_14435 PF02779 Transketolase, pyrimidine binding domain J3U87_14435 PF02780 Transketolase, C-terminal domain J3U87_14440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J3U87_14440 PF02817 e3 binding domain J3U87_14440 PF00364 Biotin-requiring enzyme J3U87_14445 PF00550 Phosphopantetheine attachment site J3U87_14450 PF04542 Sigma-70 region 2 J3U87_14450 PF08281 Sigma-70, region 4 J3U87_14475 PF03102 NeuB family J3U87_14475 PF08666 SAF domain J3U87_14485 PF04002 RadC-like JAB domain J3U87_14490 PF01425 Amidase J3U87_14495 PF02686 Glu-tRNAGln amidotransferase C subunit J3U87_14515 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J3U87_14515 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J3U87_14530 PF00011 Hsp20/alpha crystallin family J3U87_14535 PF00011 Hsp20/alpha crystallin family J3U87_14540 PF01641 SelR domain J3U87_14550 PF00593 TonB dependent receptor J3U87_14550 PF07715 TonB-dependent Receptor Plug Domain J3U87_14555 PF00069 Protein kinase domain J3U87_14555 PF03793 PASTA domain J3U87_14560 PF00730 HhH-GPD superfamily base excision DNA repair protein J3U87_14565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J3U87_14565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J3U87_14580 PF03150 Di-haem cytochrome c peroxidase J3U87_14580 PF00034 Cytochrome c J3U87_14595 PF02146 Sir2 family J3U87_14600 PF00437 Type II/IV secretion system protein J3U87_14600 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J3U87_14610 PF00582 Universal stress protein family J3U87_14630 PF13746 4Fe-4S dicluster domain J3U87_14630 PF12801 4Fe-4S binding domain J3U87_14630 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J3U87_14635 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J3U87_14635 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J3U87_14635 PF00034 Cytochrome c J3U87_14645 PF00115 Cytochrome C and Quinol oxidase polypeptide I J3U87_14655 PF00403 Heavy-metal-associated domain J3U87_14660 PF00582 Universal stress protein family J3U87_14665 PF00011 Hsp20/alpha crystallin family J3U87_14670 PF00072 Response regulator receiver domain J3U87_14670 PF00486 Transcriptional regulatory protein, C terminal J3U87_14675 PF00158 Sigma-54 interaction domain J3U87_14675 PF00072 Response regulator receiver domain J3U87_14675 PF02954 Bacterial regulatory protein, Fis family J3U87_14680 PF00072 Response regulator receiver domain J3U87_14680 PF02954 Bacterial regulatory protein, Fis family J3U87_14680 PF00158 Sigma-54 interaction domain J3U87_14685 PF01841 Transglutaminase-like superfamily J3U87_14685 PF13559 Domain of unknown function (DUF4129) J3U87_14685 PF11992 Domain of unknown function (DUF3488) J3U87_14690 PF00483 Nucleotidyl transferase J3U87_14700 PF02096 60Kd inner membrane protein J3U87_14700 PF14849 YidC periplasmic domain J3U87_14705 PF00825 Ribonuclease P J3U87_14710 PF00468 Ribosomal protein L34 J3U87_14715 PF11638 DnaA N-terminal domain J3U87_14715 PF08299 Bacterial dnaA protein helix-turn-helix J3U87_14715 PF00308 Bacterial dnaA protein J3U87_14720 PF00712 DNA polymerase III beta subunit, N-terminal domain J3U87_14720 PF02767 DNA polymerase III beta subunit, central domain J3U87_14720 PF02768 DNA polymerase III beta subunit, C-terminal domain J3U87_14725 PF02463 RecF/RecN/SMC N terminal domain J3U87_14730 PF00204 DNA gyrase B J3U87_14730 PF00986 DNA gyrase B subunit, carboxyl terminus J3U87_14730 PF18053 DNA gyrase B subunit insert domain J3U87_14730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_14730 PF01751 Toprim domain J3U87_14735 PF03989 DNA gyrase C-terminal domain, beta-propeller J3U87_14735 PF00521 DNA gyrase/topoisomerase IV, subunit A J3U87_14740 PF00923 Transaldolase/Fructose-6-phosphate aldolase J3U87_14745 PF01926 50S ribosome-binding GTPase J3U87_14745 PF10396 GTP-binding protein TrmE N-terminus J3U87_14745 PF12631 MnmE helical domain J3U87_14750 PF01134 Glucose inhibited division protein A J3U87_14750 PF13932 GidA associated domain J3U87_14755 PF13614 AAA domain J3U87_14760 PF02195 ParB-like nuclease domain J3U87_14760 PF17762 HTH domain found in ParB protein J3U87_14770 PF17848 Acetyl-coA carboxylase zinc finger domain J3U87_14770 PF01039 Carboxyl transferase domain J3U87_14775 PF08245 Mur ligase middle domain J3U87_14775 PF02875 Mur ligase family, glutamate ligase domain J3U87_14780 PF00072 Response regulator receiver domain J3U87_14790 PF02954 Bacterial regulatory protein, Fis family J3U87_14790 PF00158 Sigma-54 interaction domain J3U87_14795 PF00005 ABC transporter J3U87_14800 PF18075 FtsX extracellular domain J3U87_14840 PF17863 AAA lid domain J3U87_14840 PF07726 ATPase family associated with various cellular activities (AAA) J3U87_14850 PF00005 ABC transporter J3U87_14860 PF01882 Protein of unknown function DUF58 J3U87_14925 PF06956 Regulator of RNA terminal phosphate cyclase J3U87_14925 PF00158 Sigma-54 interaction domain J3U87_14930 PF01139 tRNA-splicing ligase RtcB J3U87_14935 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain J3U87_14935 PF01137 RNA 3'-terminal phosphate cyclase J3U87_14945 PF03734 L,D-transpeptidase catalytic domain J3U87_14950 PF00490 Delta-aminolevulinic acid dehydratase J3U87_14955 PF00753 Metallo-beta-lactamase superfamily J3U87_14970 PF00762 Ferrochelatase J3U87_14975 PF01722 BolA-like protein J3U87_15010 PF03793 PASTA domain J3U87_15010 PF00069 Protein kinase domain J3U87_15025 PF00994 Probable molybdopterin binding domain J3U87_15025 PF02464 Competence-damaged protein J3U87_15035 PF02416 mttA/Hcf106 family J3U87_15040 PF10576 Iron-sulfur binding domain of endonuclease III J3U87_15040 PF00633 Helix-hairpin-helix motif J3U87_15040 PF00730 HhH-GPD superfamily base excision DNA repair protein J3U87_15045 PF01979 Amidohydrolase family J3U87_15050 PF01668 SmpB protein J3U87_15055 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_15055 PF05362 Lon protease (S16) C-terminal proteolytic domain J3U87_15055 PF02190 ATP-dependent protease La (LON) substrate-binding domain J3U87_15060 PF00990 Diguanylate cyclase, GGDEF domain J3U87_15060 PF00072 Response regulator receiver domain J3U87_15065 PF02673 Bacitracin resistance protein BacA J3U87_15070 PF01979 Amidohydrolase family J3U87_15075 PF00271 Helicase conserved C-terminal domain J3U87_15075 PF04434 SWIM zinc finger J3U87_15075 PF00176 SNF2 family N-terminal domain J3U87_15080 PF02515 CoA-transferase family III J3U87_15085 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J3U87_15085 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J3U87_15090 PF02954 Bacterial regulatory protein, Fis family J3U87_15090 PF00158 Sigma-54 interaction domain J3U87_15090 PF00072 Response regulator receiver domain J3U87_15095 PF12826 Helix-hairpin-helix motif J3U87_15095 PF03120 NAD-dependent DNA ligase OB-fold domain J3U87_15095 PF01653 NAD-dependent DNA ligase adenylation domain J3U87_15095 PF00533 BRCA1 C Terminus (BRCT) domain J3U87_15095 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J3U87_15100 PF00593 TonB dependent receptor J3U87_15110 PF03703 Bacterial PH domain J3U87_15120 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J3U87_15120 PF00117 Glutamine amidotransferase class-I J3U87_15125 PF02142 MGS-like domain J3U87_15125 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J3U87_15125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_15130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J3U87_15130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J3U87_15145 PF01467 Cytidylyltransferase-like J3U87_15150 PF01546 Peptidase family M20/M25/M40 J3U87_15155 PF01584 CheW-like domain J3U87_15155 PF02895 Signal transducing histidine kinase, homodimeric domain J3U87_15155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_15155 PF01627 Hpt domain J3U87_15155 PF07194 P2 response regulator binding domain J3U87_15160 PF00072 Response regulator receiver domain J3U87_15160 PF00158 Sigma-54 interaction domain J3U87_15160 PF02954 Bacterial regulatory protein, Fis family J3U87_15165 PF00512 His Kinase A (phospho-acceptor) domain J3U87_15165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_15165 PF02743 Cache domain J3U87_15170 PF05036 Sporulation related domain J3U87_15170 PF03330 Lytic transglycolase J3U87_15180 PF01960 ArgJ family J3U87_15190 PF00696 Amino acid kinase family J3U87_15195 PF02774 Semialdehyde dehydrogenase, dimerisation domain J3U87_15195 PF01118 Semialdehyde dehydrogenase, NAD binding domain J3U87_15200 PF03167 Uracil DNA glycosylase superfamily J3U87_15205 PF06470 SMC proteins Flexible Hinge Domain J3U87_15205 PF02463 RecF/RecN/SMC N terminal domain J3U87_15215 PF01979 Amidohydrolase family J3U87_15225 PF00437 Type II/IV secretion system protein J3U87_15230 PF13537 Glutamine amidotransferase domain J3U87_15230 PF00733 Asparagine synthase J3U87_15235 PF01370 NAD dependent epimerase/dehydratase family J3U87_15270 PF02798 Glutathione S-transferase, N-terminal domain J3U87_15270 PF00043 Glutathione S-transferase, C-terminal domain J3U87_15285 PF00270 DEAD/DEAH box helicase J3U87_15285 PF00271 Helicase conserved C-terminal domain J3U87_15310 PF04321 RmlD substrate binding domain J3U87_15315 PF00512 His Kinase A (phospho-acceptor) domain J3U87_15315 PF00672 HAMP domain J3U87_15315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_15315 PF00072 Response regulator receiver domain J3U87_15315 PF01627 Hpt domain J3U87_15315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_15325 PF00709 Adenylosuccinate synthetase J3U87_15330 PF00290 Tryptophan synthase alpha chain J3U87_15335 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_15340 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J3U87_15345 PF00218 Indole-3-glycerol phosphate synthase J3U87_15350 PF00591 Glycosyl transferase family, a/b domain J3U87_15350 PF02885 Glycosyl transferase family, helical bundle domain J3U87_15370 PF00005 ABC transporter J3U87_15375 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_15380 PF09084 NMT1/THI5 like J3U87_15390 PF01479 S4 domain J3U87_15395 PF16363 GDP-mannose 4,6 dehydratase J3U87_15400 PF02719 Polysaccharide biosynthesis protein J3U87_15410 PF01618 MotA/TolQ/ExbB proton channel family J3U87_15415 PF13677 Membrane MotB of proton-channel complex MotA/MotB J3U87_15415 PF00691 OmpA family J3U87_15420 PF02779 Transketolase, pyrimidine binding domain J3U87_15420 PF02780 Transketolase, C-terminal domain J3U87_15430 PF01627 Hpt domain J3U87_15430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_15430 PF00072 Response regulator receiver domain J3U87_15430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_15430 PF00672 HAMP domain J3U87_15430 PF00512 His Kinase A (phospho-acceptor) domain J3U87_15450 PF00107 Zinc-binding dehydrogenase J3U87_15450 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_15455 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J3U87_15455 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J3U87_15455 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J3U87_15460 PF02350 UDP-N-acetylglucosamine 2-epimerase J3U87_15465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J3U87_15465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J3U87_15470 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J3U87_15470 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J3U87_15475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J3U87_15475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J3U87_15495 PF01740 STAS domain J3U87_15510 PF00953 Glycosyl transferase family 4 J3U87_15515 PF00483 Nucleotidyl transferase J3U87_15515 PF01050 Mannose-6-phosphate isomerase J3U87_15520 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J3U87_15520 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J3U87_15520 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J3U87_15530 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_15535 PF00005 ABC transporter J3U87_15535 PF03459 TOBE domain J3U87_15555 PF02107 Flagellar L-ring protein J3U87_15565 PF00460 Flagella basal body rod protein J3U87_15565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J3U87_15570 PF00460 Flagella basal body rod protein J3U87_15570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J3U87_15575 PF02789 Cytosol aminopeptidase family, N-terminal domain J3U87_15575 PF00883 Cytosol aminopeptidase family, catalytic domain J3U87_15580 PF00293 NUDIX domain J3U87_15595 PF00043 Glutathione S-transferase, C-terminal domain J3U87_15595 PF02798 Glutathione S-transferase, N-terminal domain J3U87_15605 PF01011 PQQ enzyme repeat J3U87_15605 PF13360 PQQ-like domain J3U87_15615 PF16177 Acetyl-coenzyme A synthetase N-terminus J3U87_15615 PF00501 AMP-binding enzyme J3U87_15615 PF13193 AMP-binding enzyme C-terminal domain J3U87_15625 PF04650 YSIRK type signal peptide J3U87_15625 PF10425 C-terminus of bacterial fibrinogen-binding adhesin J3U87_15625 PF17210 SdrD B-like domain J3U87_15625 PF00746 LPXTG cell wall anchor motif J3U87_15625 PF17961 Bacterial Ig domain J3U87_15635 PF00069 Protein kinase domain J3U87_15635 PF03793 PASTA domain J3U87_15640 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_15640 PF00550 Phosphopantetheine attachment site J3U87_15640 PF08659 KR domain J3U87_15640 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_15640 PF00698 Acyl transferase domain J3U87_15640 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_15640 PF14765 Polyketide synthase dehydratase J3U87_15640 PF00107 Zinc-binding dehydrogenase J3U87_15640 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_15645 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_15645 PF00698 Acyl transferase domain J3U87_15645 PF00107 Zinc-binding dehydrogenase J3U87_15645 PF14765 Polyketide synthase dehydratase J3U87_15645 PF00550 Phosphopantetheine attachment site J3U87_15645 PF08659 KR domain J3U87_15645 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_15645 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_15645 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_15650 PF03060 Nitronate monooxygenase J3U87_15650 PF00698 Acyl transferase domain J3U87_15660 PF01434 Peptidase family M41 J3U87_15660 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_15660 PF17862 AAA+ lid domain J3U87_15665 PF00158 Sigma-54 interaction domain J3U87_15665 PF00072 Response regulator receiver domain J3U87_15665 PF02954 Bacterial regulatory protein, Fis family J3U87_15670 PF00672 HAMP domain J3U87_15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_15670 PF00512 His Kinase A (phospho-acceptor) domain J3U87_15670 PF00989 PAS fold J3U87_15690 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J3U87_15690 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J3U87_15695 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J3U87_15700 PF02233 NAD(P) transhydrogenase beta subunit J3U87_15720 PF13307 Helicase C-terminal domain J3U87_15720 PF00929 Exonuclease J3U87_15720 PF04851 Type III restriction enzyme, res subunit J3U87_15725 PF00343 Carbohydrate phosphorylase J3U87_15740 PF08245 Mur ligase middle domain J3U87_15750 PF00072 Response regulator receiver domain J3U87_15750 PF00486 Transcriptional regulatory protein, C terminal J3U87_15765 PF09587 Bacterial capsule synthesis protein PGA_cap J3U87_15775 PF00924 Mechanosensitive ion channel J3U87_15800 PF06715 Gp5 C-terminal repeat (3 copies) J3U87_15800 PF04717 Type VI secretion system, phage-baseplate injector J3U87_15835 PF01973 Protein of unknown function DUF115 J3U87_15845 PF03737 Aldolase/RraA J3U87_15850 PF00905 Penicillin binding protein transpeptidase domain J3U87_15855 PF01098 Cell cycle protein J3U87_15860 PF03793 PASTA domain J3U87_15860 PF00069 Protein kinase domain J3U87_15870 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J3U87_15875 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_15875 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_15880 PF00550 Phosphopantetheine attachment site J3U87_15890 PF01783 Ribosomal L32p protein family J3U87_15915 PF01850 PIN domain J3U87_15920 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J3U87_15925 PF01923 Cobalamin adenosyltransferase J3U87_15940 PF00069 Protein kinase domain J3U87_15940 PF03793 PASTA domain J3U87_15945 PF00830 Ribosomal L28 family J3U87_15955 PF14497 Glutathione S-transferase, C-terminal domain J3U87_15955 PF02798 Glutathione S-transferase, N-terminal domain J3U87_15960 PF10127 RNA repair pathway DNA polymerase beta family J3U87_15980 PF00460 Flagella basal body rod protein J3U87_15980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J3U87_16005 PF02119 Flagellar P-ring protein J3U87_16020 PF16325 Peptidase family U32 C-terminal domain J3U87_16020 PF01136 Peptidase family U32 J3U87_16025 PF01370 NAD dependent epimerase/dehydratase family J3U87_16035 PF00266 Aminotransferase class-V J3U87_16040 PF01521 Iron-sulphur cluster biosynthesis J3U87_16055 PF08281 Sigma-70, region 4 J3U87_16055 PF04542 Sigma-70 region 2 J3U87_16075 PF01259 SAICAR synthetase J3U87_16085 PF00154 recA bacterial DNA recombination protein J3U87_16095 PF14492 Elongation Factor G, domain II J3U87_16095 PF03764 Elongation factor G, domain IV J3U87_16095 PF00009 Elongation factor Tu GTP binding domain J3U87_16095 PF03144 Elongation factor Tu domain 2 J3U87_16095 PF00679 Elongation factor G C-terminus J3U87_16120 PF00994 Probable molybdopterin binding domain J3U87_16120 PF02464 Competence-damaged protein J3U87_16125 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J3U87_16130 PF00375 Sodium:dicarboxylate symporter family J3U87_16135 PF01380 SIS domain J3U87_16145 PF00037 4Fe-4S binding domain J3U87_16145 PF13247 4Fe-4S dicluster domain J3U87_16180 PF12697 Alpha/beta hydrolase family J3U87_16190 PF01513 ATP-NAD kinase J3U87_16210 PF07495 Y_Y_Y domain J3U87_16210 PF00512 His Kinase A (phospho-acceptor) domain J3U87_16210 PF07495 Y_Y_Y domain J3U87_16210 PF12833 Helix-turn-helix domain J3U87_16210 PF07494 Two component regulator propeller J3U87_16210 PF00512 His Kinase A (phospho-acceptor) domain J3U87_16210 PF00072 Response regulator receiver domain J3U87_16210 PF00072 Response regulator receiver domain J3U87_16210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_16210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_16210 PF12833 Helix-turn-helix domain J3U87_16210 PF07494 Two component regulator propeller J3U87_16220 PF00072 Response regulator receiver domain J3U87_16220 PF00196 Bacterial regulatory proteins, luxR family J3U87_16230 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J3U87_16235 PF00440 Bacterial regulatory proteins, tetR family J3U87_16235 PF02909 Tetracyclin repressor-like, C-terminal domain J3U87_16245 PF04030 D-arabinono-1,4-lactone oxidase J3U87_16245 PF01565 FAD binding domain J3U87_16260 PF00294 pfkB family carbohydrate kinase J3U87_16265 PF01048 Phosphorylase superfamily J3U87_16290 PF00962 Adenosine/AMP deaminase J3U87_16305 PF00512 His Kinase A (phospho-acceptor) domain J3U87_16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_16310 PF04389 Peptidase family M28 J3U87_16310 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_16325 PF14437 MafB19-like deaminase J3U87_16330 PF01968 Hydantoinase/oxoprolinase J3U87_16330 PF05378 Hydantoinase/oxoprolinase N-terminal region J3U87_16335 PF03621 MbtH-like protein J3U87_16350 PF00069 Protein kinase domain J3U87_16385 PF00005 ABC transporter J3U87_16420 PF02824 TGS domain J3U87_16420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J3U87_16420 PF03129 Anticodon binding domain J3U87_16420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J3U87_16425 PF01300 Telomere recombination J3U87_16425 PF03481 Putative GTP-binding controlling metal-binding J3U87_16440 PF00072 Response regulator receiver domain J3U87_16440 PF00486 Transcriptional regulatory protein, C terminal J3U87_16445 PF00672 HAMP domain J3U87_16445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_16445 PF00512 His Kinase A (phospho-acceptor) domain J3U87_16450 PF08331 Domain of unknown function (DUF1730) J3U87_16465 PF00581 Rhodanese-like domain J3U87_16470 PF02146 Sir2 family J3U87_16475 PF01370 NAD dependent epimerase/dehydratase family J3U87_16485 PF07715 TonB-dependent Receptor Plug Domain J3U87_16485 PF00593 TonB dependent receptor J3U87_16495 PF04127 DNA / pantothenate metabolism flavoprotein J3U87_16495 PF02441 Flavoprotein J3U87_16505 PF00625 Guanylate kinase J3U87_16510 PF08340 Domain of unknown function (DUF1732) J3U87_16510 PF03755 YicC-like family, N-terminal region J3U87_16515 PF00005 ABC transporter J3U87_16515 PF00664 ABC transporter transmembrane region J3U87_16520 PF02684 Lipid-A-disaccharide synthetase J3U87_16530 PF05221 S-adenosyl-L-homocysteine hydrolase J3U87_16530 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J3U87_16535 PF02773 S-adenosylmethionine synthetase, C-terminal domain J3U87_16535 PF00438 S-adenosylmethionine synthetase, N-terminal domain J3U87_16535 PF02772 S-adenosylmethionine synthetase, central domain J3U87_16545 PF14759 Reductase C-terminal J3U87_16545 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_16550 PF01739 CheR methyltransferase, SAM binding domain J3U87_16550 PF03705 CheR methyltransferase, all-alpha domain J3U87_16555 PF00535 Glycosyl transferase family 2 J3U87_16565 PF00953 Glycosyl transferase family 4 J3U87_16585 PF02545 Maf-like protein J3U87_16590 PF04546 Sigma-70, non-essential region J3U87_16590 PF03979 Sigma-70 factor, region 1.1 J3U87_16590 PF00140 Sigma-70 factor, region 1.2 J3U87_16590 PF04542 Sigma-70 region 2 J3U87_16590 PF04539 Sigma-70 region 3 J3U87_16590 PF04545 Sigma-70, region 4 J3U87_16595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J3U87_16595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J3U87_16600 PF00586 AIR synthase related protein, N-terminal domain J3U87_16600 PF02769 AIR synthase related protein, C-terminal domain J3U87_16600 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J3U87_16605 PF00156 Phosphoribosyl transferase domain J3U87_16610 PF01784 NIF3 (NGG1p interacting factor 3) J3U87_16615 PF00270 DEAD/DEAH box helicase J3U87_16615 PF04408 Helicase associated domain (HA2) J3U87_16615 PF00271 Helicase conserved C-terminal domain J3U87_16615 PF08482 ATP-dependent helicase C-terminal J3U87_16620 PF01209 ubiE/COQ5 methyltransferase family J3U87_16635 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J3U87_16635 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J3U87_16635 PF01488 Shikimate / quinate 5-dehydrogenase J3U87_16640 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J3U87_16640 PF03900 Porphobilinogen deaminase, C-terminal domain J3U87_16650 PF00202 Aminotransferase class-III J3U87_16655 PF01208 Uroporphyrinogen decarboxylase (URO-D) J3U87_16660 PF03653 Uncharacterised protein family (UPF0093) J3U87_16665 PF02527 rRNA small subunit methyltransferase G J3U87_16670 PF11818 C-terminal domain of tail specific protease (DUF3340) J3U87_16670 PF00595 PDZ domain J3U87_16670 PF03572 Peptidase family S41 J3U87_16670 PF17804 Tail specific protease N-terminal domain J3U87_16705 PF00749 tRNA synthetases class I (E and Q), catalytic domain J3U87_16705 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J3U87_16715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_16720 PF17757 UvrB interaction domain J3U87_16720 PF02559 CarD-like/TRCF domain J3U87_16720 PF00270 DEAD/DEAH box helicase J3U87_16720 PF00271 Helicase conserved C-terminal domain J3U87_16720 PF03461 TRCF domain J3U87_16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_16755 PF00512 His Kinase A (phospho-acceptor) domain J3U87_16755 PF00989 PAS fold J3U87_16760 PF07694 5TMR of 5TMR-LYT J3U87_16760 PF00990 Diguanylate cyclase, GGDEF domain J3U87_16770 PF00849 RNA pseudouridylate synthase J3U87_16775 PF01553 Acyltransferase J3U87_16780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J3U87_16780 PF02542 YgbB family J3U87_16785 PF06574 FAD synthetase J3U87_16785 PF01687 Riboflavin kinase J3U87_16790 PF04608 Phosphatidylglycerophosphatase A J3U87_16805 PF00990 Diguanylate cyclase, GGDEF domain J3U87_16805 PF17158 Membrane-associated sensor, integral membrane domain J3U87_16810 PF14622 Ribonuclease-III-like J3U87_16810 PF00035 Double-stranded RNA binding motif J3U87_16815 PF01479 S4 domain J3U87_16815 PF00849 RNA pseudouridylate synthase J3U87_16820 PF02224 Cytidylate kinase J3U87_16825 PF02021 Uncharacterised protein family UPF0102 J3U87_16830 PF00069 Protein kinase domain J3U87_16830 PF03793 PASTA domain J3U87_16835 PF06977 SdiA-regulated J3U87_16845 PF00962 Adenosine/AMP deaminase J3U87_16850 PF00293 NUDIX domain J3U87_16870 PF00005 ABC transporter J3U87_16880 PF03129 Anticodon binding domain J3U87_16880 PF04073 Aminoacyl-tRNA editing domain J3U87_16880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J3U87_16890 PF01678 Diaminopimelate epimerase J3U87_16900 PF00462 Glutaredoxin J3U87_16905 PF13649 Methyltransferase domain J3U87_16920 PF00271 Helicase conserved C-terminal domain J3U87_16920 PF00570 HRDC domain J3U87_16920 PF16124 RecQ zinc-binding J3U87_16920 PF09382 RQC domain J3U87_16920 PF00270 DEAD/DEAH box helicase J3U87_16930 PF00069 Protein kinase domain J3U87_16930 PF03793 PASTA domain J3U87_16950 PF02540 NAD synthase J3U87_16950 PF00795 Carbon-nitrogen hydrolase J3U87_16960 PF02743 Cache domain J3U87_16960 PF00672 HAMP domain J3U87_16960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_16970 PF01551 Peptidase family M23 J3U87_16990 PF07963 Prokaryotic N-terminal methylation motif J3U87_16990 PF08334 Type II secretion system (T2SS), protein G J3U87_16995 PF07963 Prokaryotic N-terminal methylation motif J3U87_16995 PF08334 Type II secretion system (T2SS), protein G J3U87_17000 PF00263 Bacterial type II and III secretion system protein J3U87_17000 PF03958 Bacterial type II/III secretion system short domain J3U87_17025 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J3U87_17025 PF00437 Type II/IV secretion system protein J3U87_17030 PF00482 Type II secretion system (T2SS), protein F J3U87_17035 PF13439 Glycosyltransferase Family 4 J3U87_17035 PF00534 Glycosyl transferases group 1 J3U87_17070 PF02796 Helix-turn-helix domain of resolvase J3U87_17070 PF00239 Resolvase, N terminal domain J3U87_17115 PF14490 Helix-hairpin-helix containing domain J3U87_17115 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain J3U87_17115 PF13538 UvrD-like helicase C-terminal domain J3U87_17140 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_17140 PF00589 Phage integrase family J3U87_17280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J3U87_17305 PF00535 Glycosyl transferase family 2 J3U87_17405 PF01695 IstB-like ATP binding protein J3U87_17450 PF01209 ubiE/COQ5 methyltransferase family J3U87_17470 PF00550 Phosphopantetheine attachment site J3U87_17470 PF00668 Condensation domain J3U87_17470 PF13193 AMP-binding enzyme C-terminal domain J3U87_17470 PF00501 AMP-binding enzyme J3U87_17490 PF00593 TonB dependent receptor J3U87_17490 PF07715 TonB-dependent Receptor Plug Domain J3U87_17495 PF07683 Cobalamin synthesis protein cobW C-terminal domain J3U87_17495 PF02492 CobW/HypB/UreG, nucleotide-binding domain J3U87_17510 PF16363 GDP-mannose 4,6 dehydratase J3U87_17535 PF09278 MerR, DNA binding J3U87_17535 PF00376 MerR family regulatory protein J3U87_17540 PF05724 Thiopurine S-methyltransferase (TPMT) J3U87_17555 PF01494 FAD binding domain J3U87_17565 PF18417 L-lysine epsilon oxidase C-terminal domain J3U87_17565 PF17990 L-Lysine epsilon oxidase N-terminal J3U87_17570 PF00264 Common central domain of tyrosinase J3U87_17590 PF12728 Helix-turn-helix domain J3U87_17600 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J3U87_17600 PF00400 WD domain, G-beta repeat J3U87_17615 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J3U87_17625 PF01850 PIN domain J3U87_17650 PF03741 Integral membrane protein TerC family J3U87_17670 PF01329 Pterin 4 alpha carbinolamine dehydratase J3U87_17690 PF01734 Patatin-like phospholipase J3U87_17700 PF01039 Carboxyl transferase domain J3U87_17705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_17705 PF00512 His Kinase A (phospho-acceptor) domain J3U87_17705 PF00989 PAS fold J3U87_17705 PF08447 PAS fold J3U87_17710 PF00158 Sigma-54 interaction domain J3U87_17710 PF02954 Bacterial regulatory protein, Fis family J3U87_17710 PF00072 Response regulator receiver domain J3U87_17735 PF00213 ATP synthase delta (OSCP) subunit J3U87_17740 PF02874 ATP synthase alpha/beta family, beta-barrel domain J3U87_17740 PF00306 ATP synthase alpha/beta chain, C terminal domain J3U87_17740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3U87_17745 PF00231 ATP synthase J3U87_17750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3U87_17750 PF02874 ATP synthase alpha/beta family, beta-barrel domain J3U87_17755 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J3U87_17755 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J3U87_17760 PF13847 Methyltransferase domain J3U87_17770 PF01740 STAS domain J3U87_17775 PF07499 RuvA, C-terminal domain J3U87_17775 PF01330 RuvA N terminal domain J3U87_17780 PF17864 RuvB AAA lid domain J3U87_17780 PF05491 RuvB C-terminal winged helix domain J3U87_17780 PF05496 Holliday junction DNA helicase RuvB P-loop domain J3U87_17785 PF00158 Sigma-54 interaction domain J3U87_17785 PF01590 GAF domain J3U87_17785 PF02954 Bacterial regulatory protein, Fis family J3U87_17835 PF03485 Arginyl tRNA synthetase N terminal domain J3U87_17835 PF05746 DALR anticodon binding domain J3U87_17835 PF00750 tRNA synthetases class I (R) J3U87_17855 PF00535 Glycosyl transferase family 2 J3U87_17870 PF07963 Prokaryotic N-terminal methylation motif J3U87_17870 PF00114 Pilin (bacterial filament) J3U87_17880 PF02743 Cache domain J3U87_17880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_17880 PF00512 His Kinase A (phospho-acceptor) domain J3U87_17885 PF00158 Sigma-54 interaction domain J3U87_17885 PF02954 Bacterial regulatory protein, Fis family J3U87_17885 PF00072 Response regulator receiver domain J3U87_17900 PF00072 Response regulator receiver domain J3U87_17900 PF02954 Bacterial regulatory protein, Fis family J3U87_17900 PF00158 Sigma-54 interaction domain J3U87_17920 PF03793 PASTA domain J3U87_17920 PF00069 Protein kinase domain J3U87_17925 PF00265 Thymidine kinase J3U87_17930 PF02785 Biotin carboxylase C-terminal domain J3U87_17930 PF00289 Biotin carboxylase, N-terminal domain J3U87_17930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_17935 PF00364 Biotin-requiring enzyme J3U87_17945 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J3U87_17945 PF18074 Primosomal protein N C-terminal domain J3U87_17945 PF17764 3′ DNA-binding domain (3′BD) J3U87_17945 PF04851 Type III restriction enzyme, res subunit J3U87_17945 PF00271 Helicase conserved C-terminal domain J3U87_17960 PF00459 Inositol monophosphatase family J3U87_17965 PF04002 RadC-like JAB domain J3U87_17990 PF01209 ubiE/COQ5 methyltransferase family J3U87_18010 PF02397 Bacterial sugar transferase J3U87_18015 PF01370 NAD dependent epimerase/dehydratase family J3U87_18015 PF00551 Formyl transferase J3U87_18015 PF02911 Formyl transferase, C-terminal domain J3U87_18040 PF09335 SNARE associated Golgi protein J3U87_18045 PF01975 Survival protein SurE J3U87_18055 PF08281 Sigma-70, region 4 J3U87_18055 PF04542 Sigma-70 region 2 J3U87_18070 PF00144 Beta-lactamase J3U87_18090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J3U87_18090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_18090 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_18095 PF01048 Phosphorylase superfamily J3U87_18100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_18100 PF00512 His Kinase A (phospho-acceptor) domain J3U87_18105 PF03009 Glycerophosphoryl diester phosphodiesterase family J3U87_18110 PF00749 tRNA synthetases class I (E and Q), catalytic domain J3U87_18115 PF13538 UvrD-like helicase C-terminal domain J3U87_18125 PF01734 Patatin-like phospholipase J3U87_18135 PF00067 Cytochrome P450 J3U87_18145 PF01175 Urocanase Rossmann-like domain J3U87_18145 PF17392 Urocanase C-terminal domain J3U87_18145 PF17391 Urocanase N-terminal domain J3U87_18150 PF01551 Peptidase family M23 J3U87_18150 PF08460 Bacterial SH3 domain J3U87_18155 PF10609 NUBPL iron-transfer P-loop NTPase J3U87_18160 PF10609 NUBPL iron-transfer P-loop NTPase J3U87_18165 PF01339 CheB methylesterase J3U87_18165 PF00072 Response regulator receiver domain J3U87_18170 PF01739 CheR methyltransferase, SAM binding domain J3U87_18170 PF03705 CheR methyltransferase, all-alpha domain J3U87_18175 PF03975 CheD chemotactic sensory transduction J3U87_18180 PF07715 TonB-dependent Receptor Plug Domain J3U87_18180 PF00593 TonB dependent receptor J3U87_18185 PF02463 RecF/RecN/SMC N terminal domain J3U87_18200 PF01642 Methylmalonyl-CoA mutase J3U87_18200 PF02310 B12 binding domain J3U87_18210 PF00593 TonB dependent receptor J3U87_18210 PF07715 TonB-dependent Receptor Plug Domain J3U87_18215 PF00501 AMP-binding enzyme J3U87_18215 PF00975 Thioesterase domain J3U87_18215 PF00550 Phosphopantetheine attachment site J3U87_18215 PF00668 Condensation domain J3U87_18215 PF13193 AMP-binding enzyme C-terminal domain J3U87_18260 PF00085 Thioredoxin J3U87_18265 PF01479 S4 domain J3U87_18265 PF00849 RNA pseudouridylate synthase J3U87_18285 PF18073 Rubredoxin metal binding domain J3U87_18290 PF03793 PASTA domain J3U87_18290 PF00069 Protein kinase domain J3U87_18310 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_18310 PF00589 Phage integrase family J3U87_18340 PF01752 Collagenase J3U87_18340 PF18496 Collagenase G catalytic helper subdomain J3U87_18340 PF08453 Peptidase family M9 N-terminal J3U87_18350 PF01266 FAD dependent oxidoreductase J3U87_18355 PF05544 Proline racemase J3U87_18360 PF07729 FCD domain J3U87_18360 PF00392 Bacterial regulatory proteins, gntR family J3U87_18365 PF00171 Aldehyde dehydrogenase family J3U87_18370 PF00701 Dihydrodipicolinate synthetase family J3U87_18380 PF00990 Diguanylate cyclase, GGDEF domain J3U87_18385 PF00486 Transcriptional regulatory protein, C terminal J3U87_18385 PF00072 Response regulator receiver domain J3U87_18405 PF13732 Domain of unknown function (DUF4162) J3U87_18405 PF00005 ABC transporter J3U87_18425 PF00156 Phosphoribosyl transferase domain J3U87_18435 PF06508 Queuosine biosynthesis protein QueC J3U87_18440 PF04055 Radical SAM superfamily J3U87_18465 PF01433 Peptidase family M1 domain J3U87_18475 PF00121 Triosephosphate isomerase J3U87_18480 PF00162 Phosphoglycerate kinase J3U87_18490 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J3U87_18490 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J3U87_18495 PF10509 Galactokinase galactose-binding signature J3U87_18495 PF08544 GHMP kinases C terminal J3U87_18495 PF00288 GHMP kinases N terminal domain J3U87_18500 PF00703 Glycosyl hydrolases family 2 J3U87_18500 PF02929 Beta galactosidase small chain J3U87_18500 PF16353 Domain of unknown function(DUF4981) J3U87_18500 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J3U87_18500 PF02837 Glycosyl hydrolases family 2, sugar binding domain J3U87_18510 PF01042 Endoribonuclease L-PSP J3U87_18530 PF01625 Peptide methionine sulfoxide reductase J3U87_18535 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J3U87_18535 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_18540 PF01416 tRNA pseudouridine synthase J3U87_18565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J3U87_18575 PF03480 Bacterial extracellular solute-binding protein, family 7 J3U87_18580 PF16123 Hydroxyacylglutathione hydrolase C-terminus J3U87_18580 PF00753 Metallo-beta-lactamase superfamily J3U87_18590 PF00072 Response regulator receiver domain J3U87_18590 PF00486 Transcriptional regulatory protein, C terminal J3U87_18600 PF01808 AICARFT/IMPCHase bienzyme J3U87_18600 PF02142 MGS-like domain J3U87_18605 PF01557 Fumarylacetoacetate (FAA) hydrolase family J3U87_18630 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_18630 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_18630 PF03413 Peptidase propeptide and YPEB domain J3U87_18630 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_18630 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_18635 PF04073 Aminoacyl-tRNA editing domain J3U87_18645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J3U87_18645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J3U87_18645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J3U87_18645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J3U87_18685 PF04012 PspA/IM30 family J3U87_18690 PF13580 SIS domain J3U87_18695 PF01032 FecCD transport family J3U87_18705 PF01584 CheW-like domain J3U87_18710 PF01584 CheW-like domain J3U87_18710 PF09078 CheY binding J3U87_18710 PF02895 Signal transducing histidine kinase, homodimeric domain J3U87_18710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_18710 PF01627 Hpt domain J3U87_18715 PF03109 ABC1 family J3U87_18725 PF02580 D-Tyr-tRNA(Tyr) deacylase J3U87_18735 PF00571 CBS domain J3U87_18735 PF01769 Divalent cation transporter J3U87_18735 PF03448 MgtE intracellular N domain J3U87_18740 PF02371 Transposase IS116/IS110/IS902 family J3U87_18740 PF01548 Transposase J3U87_18755 PF02091 Glycyl-tRNA synthetase alpha subunit J3U87_18760 PF05746 DALR anticodon binding domain J3U87_18760 PF02092 Glycyl-tRNA synthetase beta subunit J3U87_18765 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J3U87_18765 PF02896 PEP-utilising enzyme, TIM barrel domain J3U87_18765 PF00391 PEP-utilising enzyme, mobile domain J3U87_18785 PF02390 Putative methyltransferase J3U87_18790 PF00593 TonB dependent receptor J3U87_18795 PF00483 Nucleotidyl transferase J3U87_18795 PF01050 Mannose-6-phosphate isomerase J3U87_18800 PF00480 ROK family J3U87_18805 PF12833 Helix-turn-helix domain J3U87_18805 PF00512 His Kinase A (phospho-acceptor) domain J3U87_18805 PF07495 Y_Y_Y domain J3U87_18805 PF00072 Response regulator receiver domain J3U87_18805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_18805 PF07494 Two component regulator propeller J3U87_18810 PF00196 Bacterial regulatory proteins, luxR family J3U87_18810 PF00072 Response regulator receiver domain J3U87_18820 PF17678 Glycosyl hydrolase family 92 N-terminal domain J3U87_18820 PF07971 Glycosyl hydrolase family 92 J3U87_18830 PF00817 impB/mucB/samB family J3U87_18830 PF11799 impB/mucB/samB family C-terminal domain J3U87_18830 PF11798 IMS family HHH motif J3U87_18835 PF00270 DEAD/DEAH box helicase J3U87_18835 PF17191 RecG wedge domain J3U87_18835 PF00271 Helicase conserved C-terminal domain J3U87_18850 PF00069 Protein kinase domain J3U87_18850 PF03793 PASTA domain J3U87_18860 PF00501 AMP-binding enzyme J3U87_18860 PF13193 AMP-binding enzyme C-terminal domain J3U87_18865 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_18865 PF00672 HAMP domain J3U87_18870 PF13180 PDZ domain J3U87_18875 PF02954 Bacterial regulatory protein, Fis family J3U87_18875 PF00158 Sigma-54 interaction domain J3U87_18875 PF00072 Response regulator receiver domain J3U87_18880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_18880 PF00360 Phytochrome region J3U87_18880 PF08446 PAS fold J3U87_18880 PF01590 GAF domain J3U87_18880 PF00512 His Kinase A (phospho-acceptor) domain J3U87_18885 PF00072 Response regulator receiver domain J3U87_18885 PF00196 Bacterial regulatory proteins, luxR family J3U87_18890 PF02541 Ppx/GppA phosphatase family J3U87_18895 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV J3U87_18905 PF01883 Iron-sulfur cluster assembly protein J3U87_18905 PF10609 NUBPL iron-transfer P-loop NTPase J3U87_18910 PF01883 Iron-sulfur cluster assembly protein J3U87_18910 PF10609 NUBPL iron-transfer P-loop NTPase J3U87_18915 PF01883 Iron-sulfur cluster assembly protein J3U87_18920 PF01592 NifU-like N terminal domain J3U87_18925 PF00266 Aminotransferase class-V J3U87_18930 PF01458 Uncharacterized protein family (UPF0051) J3U87_18935 PF00005 ABC transporter J3U87_18940 PF01458 Uncharacterized protein family (UPF0051) J3U87_18955 PF00106 short chain dehydrogenase J3U87_18965 PF05199 GMC oxidoreductase J3U87_18965 PF00732 GMC oxidoreductase J3U87_18980 PF02503 Polyphosphate kinase middle domain J3U87_18980 PF13090 Polyphosphate kinase C-terminal domain 2 J3U87_18980 PF17941 Polyphosphate kinase C-terminal domain 1 J3U87_18980 PF13089 Polyphosphate kinase N-terminal domain J3U87_18990 PF17804 Tail specific protease N-terminal domain J3U87_18990 PF03572 Peptidase family S41 J3U87_18990 PF11818 C-terminal domain of tail specific protease (DUF3340) J3U87_18990 PF00595 PDZ domain J3U87_18995 PF00132 Bacterial transferase hexapeptide (six repeats) J3U87_19000 PF01565 FAD binding domain J3U87_19000 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J3U87_19020 PF00271 Helicase conserved C-terminal domain J3U87_19020 PF00270 DEAD/DEAH box helicase J3U87_19040 PF13519 von Willebrand factor type A domain J3U87_19050 PF00570 HRDC domain J3U87_19050 PF01612 3'-5' exonuclease J3U87_19060 PF01209 ubiE/COQ5 methyltransferase family J3U87_19080 PF01479 S4 domain J3U87_19080 PF00579 tRNA synthetases class I (W and Y) J3U87_19085 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J3U87_19085 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J3U87_19105 PF04389 Peptidase family M28 J3U87_19105 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_19105 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_19125 PF00682 HMGL-like J3U87_19130 PF00330 Aconitase family (aconitate hydratase) J3U87_19135 PF00694 Aconitase C-terminal domain J3U87_19140 PF00180 Isocitrate/isopropylmalate dehydrogenase J3U87_19145 PF00326 Prolyl oligopeptidase family J3U87_19145 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J3U87_19150 PF00216 Bacterial DNA-binding protein J3U87_19170 PF05547 Immune inhibitor A peptidase M6 J3U87_19170 PF00801 PKD domain J3U87_19190 PF13673 Acetyltransferase (GNAT) domain J3U87_19190 PF04229 GrpB protein J3U87_19200 PF07676 WD40-like Beta Propeller Repeat J3U87_19200 PF14685 Tricorn protease PDZ domain J3U87_19200 PF14684 Tricorn protease C1 domain J3U87_19200 PF03572 Peptidase family S41 J3U87_19210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_19210 PF00512 His Kinase A (phospho-acceptor) domain J3U87_19210 PF00989 PAS fold J3U87_19215 PF07690 Major Facilitator Superfamily J3U87_19220 PF02569 Pantoate-beta-alanine ligase J3U87_19225 PF02548 Ketopantoate hydroxymethyltransferase J3U87_19235 PF00575 S1 RNA binding domain J3U87_19275 PF07726 ATPase family associated with various cellular activities (AAA) J3U87_19275 PF17863 AAA lid domain J3U87_19290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J3U87_19290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_19290 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_19295 PF01121 Dephospho-CoA kinase J3U87_19300 PF02719 Polysaccharide biosynthesis protein J3U87_19320 PF00166 Chaperonin 10 Kd subunit J3U87_19325 PF00118 TCP-1/cpn60 chaperonin family J3U87_19330 PF00156 Phosphoribosyl transferase domain J3U87_19335 PF00128 Alpha amylase, catalytic domain J3U87_19335 PF11941 Domain of unknown function (DUF3459) J3U87_19350 PF00072 Response regulator receiver domain J3U87_19350 PF00672 HAMP domain J3U87_19350 PF01627 Hpt domain J3U87_19350 PF00512 His Kinase A (phospho-acceptor) domain J3U87_19350 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_19350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_19355 PF00512 His Kinase A (phospho-acceptor) domain J3U87_19355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_19360 PF01979 Amidohydrolase family J3U87_19370 PF00491 Arginase family J3U87_19375 PF03960 ArsC family J3U87_19380 PF00025 ADP-ribosylation factor family J3U87_19390 PF02910 Fumarate reductase flavoprotein C-term J3U87_19390 PF00890 FAD binding domain J3U87_19395 PF13085 2Fe-2S iron-sulfur cluster binding domain J3U87_19400 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J3U87_19400 PF01488 Shikimate / quinate 5-dehydrogenase J3U87_19400 PF08501 Shikimate dehydrogenase substrate binding domain J3U87_19410 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_19410 PF03413 Peptidase propeptide and YPEB domain J3U87_19410 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_19410 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_19435 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_19435 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_19435 PF03413 Peptidase propeptide and YPEB domain J3U87_19435 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_19435 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_19445 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J3U87_19455 PF03413 Peptidase propeptide and YPEB domain J3U87_19455 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_19455 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_19455 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_19460 PF00486 Transcriptional regulatory protein, C terminal J3U87_19460 PF18500 CadC C-terminal domain 1 J3U87_19475 PF12794 Mechanosensitive ion channel inner membrane domain 1 J3U87_19475 PF00924 Mechanosensitive ion channel J3U87_19475 PF12795 Mechanosensitive ion channel porin domain J3U87_19495 PF00905 Penicillin binding protein transpeptidase domain J3U87_19495 PF03717 Penicillin-binding Protein dimerisation domain J3U87_19500 PF01098 Cell cycle protein J3U87_19520 PF04055 Radical SAM superfamily J3U87_19520 PF18693 TRAM domain J3U87_19520 PF00919 Uncharacterized protein family UPF0004 J3U87_19525 PF00152 tRNA synthetases class II (D, K and N) J3U87_19525 PF01336 OB-fold nucleic acid binding domain J3U87_19530 PF01370 NAD dependent epimerase/dehydratase family J3U87_19540 PF00330 Aconitase family (aconitate hydratase) J3U87_19540 PF00694 Aconitase C-terminal domain J3U87_19560 PF13472 GDSL-like Lipase/Acylhydrolase family J3U87_19565 PF00005 ABC transporter J3U87_19585 PF02230 Phospholipase/Carboxylesterase J3U87_19590 PF03707 Bacterial signalling protein N terminal repeat J3U87_19590 PF00990 Diguanylate cyclase, GGDEF domain J3U87_19590 PF00563 EAL domain J3U87_19595 PF00072 Response regulator receiver domain J3U87_19600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_19600 PF00512 His Kinase A (phospho-acceptor) domain J3U87_19600 PF00989 PAS fold J3U87_19605 PF04012 PspA/IM30 family J3U87_19615 PF01556 DnaJ C terminal domain J3U87_19615 PF00226 DnaJ domain J3U87_19640 PF01048 Phosphorylase superfamily J3U87_19660 PF01042 Endoribonuclease L-PSP J3U87_19665 PF00171 Aldehyde dehydrogenase family J3U87_19675 PF00106 short chain dehydrogenase J3U87_19680 PF03301 Tryptophan 2,3-dioxygenase J3U87_19695 PF01809 Putative membrane protein insertion efficiency factor J3U87_19700 PF00027 Cyclic nucleotide-binding domain J3U87_19700 PF00520 Ion transport protein J3U87_19710 PF00563 EAL domain J3U87_19710 PF00990 Diguanylate cyclase, GGDEF domain J3U87_19710 PF03707 Bacterial signalling protein N terminal repeat J3U87_19715 PF00072 Response regulator receiver domain J3U87_19715 PF01627 Hpt domain J3U87_19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_19715 PF02895 Signal transducing histidine kinase, homodimeric domain J3U87_19715 PF01584 CheW-like domain J3U87_19720 PF01584 CheW-like domain J3U87_19725 PF00072 Response regulator receiver domain J3U87_19725 PF01339 CheB methylesterase J3U87_19735 PF00512 His Kinase A (phospho-acceptor) domain J3U87_19735 PF16736 Single Cache-like J3U87_19735 PF00989 PAS fold J3U87_19735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_19750 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J3U87_19750 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J3U87_19770 PF00472 RF-1 domain J3U87_19770 PF03462 PCRF domain J3U87_19780 PF05198 Translation initiation factor IF-3, N-terminal domain J3U87_19780 PF00707 Translation initiation factor IF-3, C-terminal domain J3U87_19785 PF01632 Ribosomal protein L35 J3U87_19790 PF00453 Ribosomal protein L20 J3U87_19795 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J3U87_19795 PF01409 tRNA synthetases class II core domain (F) J3U87_19800 PF03484 tRNA synthetase B5 domain J3U87_19800 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J3U87_19800 PF01588 Putative tRNA binding domain J3U87_19800 PF03147 Ferredoxin-fold anticodon binding domain J3U87_19800 PF03483 B3/4 domain J3U87_19810 PF05164 Cell division protein ZapA J3U87_19820 PF13277 YmdB-like protein J3U87_19825 PF01478 Type IV leader peptidase family J3U87_19825 PF06750 Bacterial Peptidase A24 N-terminal domain J3U87_19830 PF04286 Protein of unknown function (DUF445) J3U87_19835 PF00486 Transcriptional regulatory protein, C terminal J3U87_19835 PF00072 Response regulator receiver domain J3U87_19860 PF00164 Ribosomal protein S12/S23 J3U87_19865 PF00177 Ribosomal protein S7p/S5e J3U87_19870 PF14492 Elongation Factor G, domain II J3U87_19870 PF03764 Elongation factor G, domain IV J3U87_19870 PF00009 Elongation factor Tu GTP binding domain J3U87_19870 PF03144 Elongation factor Tu domain 2 J3U87_19870 PF00679 Elongation factor G C-terminus J3U87_19875 PF00338 Ribosomal protein S10p/S20e J3U87_19880 PF00297 Ribosomal protein L3 J3U87_19885 PF00573 Ribosomal protein L4/L1 family J3U87_19890 PF00276 Ribosomal protein L23 J3U87_19895 PF00181 Ribosomal Proteins L2, RNA binding domain J3U87_19895 PF03947 Ribosomal Proteins L2, C-terminal domain J3U87_19900 PF00203 Ribosomal protein S19 J3U87_19905 PF00237 Ribosomal protein L22p/L17e J3U87_19910 PF07650 KH domain J3U87_19910 PF00189 Ribosomal protein S3, C-terminal domain J3U87_19915 PF00252 Ribosomal protein L16p/L10e J3U87_19920 PF00831 Ribosomal L29 protein J3U87_19925 PF00366 Ribosomal protein S17 J3U87_19930 PF00238 Ribosomal protein L14p/L23e J3U87_19935 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J3U87_19935 PF00467 KOW motif J3U87_19940 PF00673 ribosomal L5P family C-terminus J3U87_19940 PF00281 Ribosomal protein L5 J3U87_19945 PF00410 Ribosomal protein S8 J3U87_19950 PF00347 Ribosomal protein L6 J3U87_19955 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J3U87_19960 PF03719 Ribosomal protein S5, C-terminal domain J3U87_19960 PF00333 Ribosomal protein S5, N-terminal domain J3U87_19965 PF00327 Ribosomal protein L30p/L7e J3U87_19970 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J3U87_19975 PF00344 SecY translocase J3U87_19980 PF01176 Translation initiation factor 1A / IF-1 J3U87_19985 PF00416 Ribosomal protein S13/S18 J3U87_19990 PF00411 Ribosomal protein S11 J3U87_19995 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J3U87_19995 PF01000 RNA polymerase Rpb3/RpoA insert domain J3U87_19995 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J3U87_20000 PF01196 Ribosomal protein L17 J3U87_20005 PF00958 GMP synthase C terminal domain J3U87_20005 PF02540 NAD synthase J3U87_20005 PF00117 Glutamine amidotransferase class-I J3U87_20010 PF04199 Putative cyclase J3U87_20025 PF18158 Adaptive response protein AidB N-terminal domain J3U87_20025 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_20025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_20045 PF17763 Glutaminase/Asparaginase C-terminal domain J3U87_20045 PF00710 Asparaginase, N-terminal J3U87_20050 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J3U87_20050 PF01926 50S ribosome-binding GTPase J3U87_20060 PF00990 Diguanylate cyclase, GGDEF domain J3U87_20080 PF01728 FtsJ-like methyltransferase J3U87_20080 PF01479 S4 domain J3U87_20085 PF01418 Helix-turn-helix domain, rpiR family J3U87_20085 PF01380 SIS domain J3U87_20090 PF01497 Periplasmic binding protein J3U87_20095 PF00005 ABC transporter J3U87_20120 PF00550 Phosphopantetheine attachment site J3U87_20120 PF07993 Male sterility protein J3U87_20120 PF00668 Condensation domain J3U87_20120 PF13193 AMP-binding enzyme C-terminal domain J3U87_20120 PF00501 AMP-binding enzyme J3U87_20130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_20130 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J3U87_20130 PF02142 MGS-like domain J3U87_20135 PF08323 Starch synthase catalytic domain J3U87_20135 PF00534 Glycosyl transferases group 1 J3U87_20140 PF02844 Phosphoribosylglycinamide synthetase, N domain J3U87_20140 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J3U87_20140 PF02843 Phosphoribosylglycinamide synthetase, C domain J3U87_20165 PF00593 TonB dependent receptor J3U87_20170 PF00975 Thioesterase domain J3U87_20175 PF00072 Response regulator receiver domain J3U87_20175 PF09308 LuxQ, periplasmic J3U87_20175 PF00512 His Kinase A (phospho-acceptor) domain J3U87_20175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_20180 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J3U87_20195 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J3U87_20210 PF03441 FAD binding domain of DNA photolyase J3U87_20210 PF00875 DNA photolyase J3U87_20220 PF13411 MerR HTH family regulatory protein J3U87_20225 PF00082 Subtilase family J3U87_20225 PF02225 PA domain J3U87_20225 PF06280 Fn3-like domain J3U87_20235 PF01817 Chorismate mutase type II J3U87_20235 PF01842 ACT domain J3U87_20235 PF00800 Prephenate dehydratase J3U87_20240 PF00588 SpoU rRNA Methylase family J3U87_20240 PF08032 RNA 2'-O ribose methyltransferase substrate binding J3U87_20245 PF09334 tRNA synthetases class I (M) J3U87_20245 PF01588 Putative tRNA binding domain J3U87_20250 PF02391 MoaE protein J3U87_20255 PF02597 ThiS family J3U87_20260 PF03606 C4-dicarboxylate anaerobic carrier J3U87_20275 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J3U87_20275 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J3U87_20280 PF00115 Cytochrome C and Quinol oxidase polypeptide I J3U87_20285 PF00510 Cytochrome c oxidase subunit III J3U87_20300 PF01594 AI-2E family transporter J3U87_20310 PF05193 Peptidase M16 inactive domain J3U87_20310 PF00675 Insulinase (Peptidase family M16) J3U87_20315 PF00692 dUTPase J3U87_20325 PF04055 Radical SAM superfamily J3U87_20335 PF08032 RNA 2'-O ribose methyltransferase substrate binding J3U87_20335 PF00588 SpoU rRNA Methylase family J3U87_20340 PF00216 Bacterial DNA-binding protein J3U87_20345 PF00586 AIR synthase related protein, N-terminal domain J3U87_20345 PF02769 AIR synthase related protein, C-terminal domain J3U87_20355 PF00072 Response regulator receiver domain J3U87_20355 PF00158 Sigma-54 interaction domain J3U87_20355 PF02954 Bacterial regulatory protein, Fis family J3U87_20380 PF00294 pfkB family carbohydrate kinase J3U87_20380 PF01467 Cytidylyltransferase-like J3U87_20385 PF00085 Thioredoxin J3U87_20390 PF01026 TatD related DNase J3U87_20395 PF00899 ThiF family J3U87_20435 PF02622 Uncharacterized ACR, COG1678 J3U87_20455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_20455 PF00512 His Kinase A (phospho-acceptor) domain J3U87_20460 PF00158 Sigma-54 interaction domain J3U87_20460 PF02954 Bacterial regulatory protein, Fis family J3U87_20460 PF00072 Response regulator receiver domain J3U87_20470 PF00486 Transcriptional regulatory protein, C terminal J3U87_20470 PF00072 Response regulator receiver domain J3U87_20475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_20475 PF00512 His Kinase A (phospho-acceptor) domain J3U87_20475 PF00672 HAMP domain J3U87_20480 PF02321 Outer membrane efflux protein J3U87_20485 PF13533 Biotin-lipoyl like J3U87_20490 PF00873 AcrB/AcrD/AcrF family J3U87_20495 PF13460 NAD(P)H-binding J3U87_20495 PF11066 Protein of unknown function (DUF2867) J3U87_20510 PF00144 Beta-lactamase J3U87_20510 PF11954 Domain of unknown function (DUF3471) J3U87_20525 PF00005 ABC transporter J3U87_20535 PF00639 PPIC-type PPIASE domain J3U87_20535 PF09312 SurA N-terminal domain J3U87_20545 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase J3U87_20550 PF00561 alpha/beta hydrolase fold J3U87_20555 PF00561 alpha/beta hydrolase fold J3U87_20565 PF00698 Acyl transferase domain J3U87_20565 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_20565 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_20565 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_20565 PF00550 Phosphopantetheine attachment site J3U87_20565 PF08659 KR domain J3U87_20570 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_20570 PF08659 KR domain J3U87_20570 PF00550 Phosphopantetheine attachment site J3U87_20570 PF14765 Polyketide synthase dehydratase J3U87_20570 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_20570 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_20570 PF00698 Acyl transferase domain J3U87_20575 PF00593 TonB dependent receptor J3U87_20585 PF13188 PAS domain J3U87_20585 PF00512 His Kinase A (phospho-acceptor) domain J3U87_20585 PF08448 PAS fold J3U87_20585 PF00072 Response regulator receiver domain J3U87_20585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_20600 PF00582 Universal stress protein family J3U87_20630 PF16363 GDP-mannose 4,6 dehydratase J3U87_20635 PF01300 Telomere recombination J3U87_20640 PF07885 Ion channel J3U87_20640 PF02254 TrkA-N domain J3U87_20700 PF01925 Sulfite exporter TauE/SafE J3U87_20710 PF01842 ACT domain J3U87_20710 PF00551 Formyl transferase J3U87_20715 PF00266 Aminotransferase class-V J3U87_20725 PF00144 Beta-lactamase J3U87_20745 PF00593 TonB dependent receptor J3U87_20745 PF07715 TonB-dependent Receptor Plug Domain J3U87_20750 PF00550 Phosphopantetheine attachment site J3U87_20750 PF00668 Condensation domain J3U87_20750 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_20750 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_20750 PF00698 Acyl transferase domain J3U87_20750 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_20755 PF00668 Condensation domain J3U87_20755 PF14765 Polyketide synthase dehydratase J3U87_20755 PF00501 AMP-binding enzyme J3U87_20755 PF13193 AMP-binding enzyme C-terminal domain J3U87_20755 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_20755 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_20755 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_20755 PF08659 KR domain J3U87_20755 PF00550 Phosphopantetheine attachment site J3U87_20765 PF02913 FAD linked oxidases, C-terminal domain J3U87_20765 PF01565 FAD binding domain J3U87_20765 PF13183 4Fe-4S dicluster domain J3U87_20775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J3U87_20775 PF01842 ACT domain J3U87_20775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J3U87_20780 PF01979 Amidohydrolase family J3U87_20780 PF13382 Adenine deaminase C-terminal domain J3U87_20785 PF00144 Beta-lactamase J3U87_20800 PF03062 MBOAT, membrane-bound O-acyltransferase family J3U87_20810 PF00664 ABC transporter transmembrane region J3U87_20810 PF00005 ABC transporter J3U87_20815 PF00664 ABC transporter transmembrane region J3U87_20815 PF00005 ABC transporter J3U87_20835 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J3U87_20840 PF12327 FtsZ family, C-terminal domain J3U87_20840 PF00091 Tubulin/FtsZ family, GTPase domain J3U87_20845 PF02491 SHS2 domain inserted in FTSA J3U87_20855 PF08245 Mur ligase middle domain J3U87_20855 PF02875 Mur ligase family, glutamate ligase domain J3U87_20855 PF01225 Mur ligase family, catalytic domain J3U87_20860 PF03033 Glycosyltransferase family 28 N-terminal domain J3U87_20860 PF04101 Glycosyltransferase family 28 C-terminal domain J3U87_20865 PF01098 Cell cycle protein J3U87_20870 PF02875 Mur ligase family, glutamate ligase domain J3U87_20870 PF08245 Mur ligase middle domain J3U87_20875 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J3U87_20875 PF00953 Glycosyl transferase family 4 J3U87_20880 PF01225 Mur ligase family, catalytic domain J3U87_20880 PF02875 Mur ligase family, glutamate ligase domain J3U87_20880 PF08245 Mur ligase middle domain J3U87_20885 PF01225 Mur ligase family, catalytic domain J3U87_20885 PF02875 Mur ligase family, glutamate ligase domain J3U87_20885 PF08245 Mur ligase middle domain J3U87_20890 PF03717 Penicillin-binding Protein dimerisation domain J3U87_20890 PF00905 Penicillin binding protein transpeptidase domain J3U87_20900 PF01795 MraW methylase family J3U87_20905 PF02381 MraZ protein, putative antitoxin-like J3U87_20915 PF00696 Amino acid kinase family J3U87_20930 PF00106 short chain dehydrogenase J3U87_20945 PF00248 Aldo/keto reductase family J3U87_20960 PF00072 Response regulator receiver domain J3U87_20960 PF12833 Helix-turn-helix domain J3U87_20965 PF00188 Cysteine-rich secretory protein family J3U87_20970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J3U87_20970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J3U87_20985 PF13426 PAS domain J3U87_20985 PF08447 PAS fold J3U87_20985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_20990 PF00082 Subtilase family J3U87_20990 PF05922 Peptidase inhibitor I9 J3U87_21000 PF02628 Cytochrome oxidase assembly protein J3U87_21010 PF00285 Citrate synthase, C-terminal domain J3U87_21020 PF00271 Helicase conserved C-terminal domain J3U87_21020 PF04851 Type III restriction enzyme, res subunit J3U87_21020 PF02151 UvrB/uvrC motif J3U87_21020 PF12344 Ultra-violet resistance protein B J3U87_21020 PF17757 UvrB interaction domain J3U87_21030 PF17810 Arginine decarboxylase helical bundle domain J3U87_21030 PF17944 Arginine decarboxylase C-terminal helical extension J3U87_21030 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J3U87_21040 PF01966 HD domain J3U87_21045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_21045 PF00072 Response regulator receiver domain J3U87_21045 PF00672 HAMP domain J3U87_21045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_21045 PF00512 His Kinase A (phospho-acceptor) domain J3U87_21045 PF01627 Hpt domain J3U87_21050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J3U87_21060 PF08241 Methyltransferase domain J3U87_21070 PF01131 DNA topoisomerase J3U87_21070 PF01751 Toprim domain J3U87_21075 PF11897 Protein of unknown function (DUF3417) J3U87_21075 PF00343 Carbohydrate phosphorylase J3U87_21085 PF03109 ABC1 family J3U87_21100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_21100 PF00672 HAMP domain J3U87_21105 PF03144 Elongation factor Tu domain 2 J3U87_21105 PF00009 Elongation factor Tu GTP binding domain J3U87_21105 PF03764 Elongation factor G, domain IV J3U87_21105 PF14492 Elongation Factor G, domain II J3U87_21105 PF00679 Elongation factor G C-terminus J3U87_21110 PF01207 Dihydrouridine synthase (Dus) J3U87_21130 PF02926 THUMP domain J3U87_21130 PF02568 Thiamine biosynthesis protein (ThiI) J3U87_21140 PF02386 Cation transport protein J3U87_21145 PF02080 TrkA-C domain J3U87_21145 PF02254 TrkA-N domain J3U87_21150 PF01661 Macro domain J3U87_21155 PF00155 Aminotransferase class I and II J3U87_21180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_21180 PF00672 HAMP domain J3U87_21190 PF00854 POT family J3U87_21195 PF07690 Major Facilitator Superfamily J3U87_21210 PF01180 Dihydroorotate dehydrogenase J3U87_21215 PF01106 NifU-like domain J3U87_21230 PF11953 Domain of unknown function (DUF3470) J3U87_21230 PF00037 4Fe-4S binding domain J3U87_21245 PF00994 Probable molybdopterin binding domain J3U87_21250 PF02525 Flavodoxin-like fold J3U87_21255 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J3U87_21290 PF10150 Ribonuclease E/G family J3U87_21290 PF00575 S1 RNA binding domain J3U87_21300 PF03600 Citrate transporter J3U87_21300 PF02080 TrkA-C domain J3U87_21330 PF08003 Protein of unknown function (DUF1698) J3U87_21340 PF13847 Methyltransferase domain J3U87_21355 PF08281 Sigma-70, region 4 J3U87_21355 PF04542 Sigma-70 region 2 J3U87_21390 PF01235 Sodium:alanine symporter family J3U87_21395 PF03979 Sigma-70 factor, region 1.1 J3U87_21395 PF04542 Sigma-70 region 2 J3U87_21395 PF04539 Sigma-70 region 3 J3U87_21395 PF04545 Sigma-70, region 4 J3U87_21395 PF00140 Sigma-70 factor, region 1.2 J3U87_21400 PF13411 MerR HTH family regulatory protein J3U87_21405 PF01556 DnaJ C terminal domain J3U87_21405 PF00684 DnaJ central domain J3U87_21405 PF00226 DnaJ domain J3U87_21410 PF00012 Hsp70 protein J3U87_21420 PF00437 Type II/IV secretion system protein J3U87_21425 PF00905 Penicillin binding protein transpeptidase domain J3U87_21425 PF17092 Penicillin-binding protein OB-like domain J3U87_21425 PF00912 Transglycosylase J3U87_21430 PF02311 AraC-like ligand binding domain J3U87_21430 PF12833 Helix-turn-helix domain J3U87_21440 PF01177 Asp/Glu/Hydantoin racemase J3U87_21445 PF00668 Condensation domain J3U87_21445 PF13193 AMP-binding enzyme C-terminal domain J3U87_21445 PF07993 Male sterility protein J3U87_21445 PF00550 Phosphopantetheine attachment site J3U87_21445 PF00501 AMP-binding enzyme J3U87_21450 PF00668 Condensation domain J3U87_21450 PF00550 Phosphopantetheine attachment site J3U87_21450 PF00501 AMP-binding enzyme J3U87_21450 PF13193 AMP-binding enzyme C-terminal domain J3U87_21455 PF01627 Hpt domain J3U87_21455 PF00072 Response regulator receiver domain J3U87_21455 PF00512 His Kinase A (phospho-acceptor) domain J3U87_21455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_21455 PF00672 HAMP domain J3U87_21455 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_21460 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J3U87_21460 PF01872 RibD C-terminal domain J3U87_21505 PF04055 Radical SAM superfamily J3U87_21525 PF03793 PASTA domain J3U87_21525 PF00069 Protein kinase domain J3U87_21530 PF00437 Type II/IV secretion system protein J3U87_21535 PF00437 Type II/IV secretion system protein J3U87_21540 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_21540 PF00082 Subtilase family J3U87_21540 PF05922 Peptidase inhibitor I9 J3U87_21560 PF01053 Cys/Met metabolism PLP-dependent enzyme J3U87_21565 PF01070 FMN-dependent dehydrogenase J3U87_21570 PF00069 Protein kinase domain J3U87_21570 PF03793 PASTA domain J3U87_21575 PF09308 LuxQ, periplasmic J3U87_21575 PF00512 His Kinase A (phospho-acceptor) domain J3U87_21575 PF00072 Response regulator receiver domain J3U87_21575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_21580 PF00535 Glycosyl transferase family 2 J3U87_21585 PF00593 TonB dependent receptor J3U87_21585 PF07715 TonB-dependent Receptor Plug Domain J3U87_21595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_21595 PF03466 LysR substrate binding domain J3U87_21600 PF00012 Hsp70 protein J3U87_21625 PF03819 MazG nucleotide pyrophosphohydrolase domain J3U87_21630 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J3U87_21640 PF00072 Response regulator receiver domain J3U87_21640 PF01627 Hpt domain J3U87_21640 PF00512 His Kinase A (phospho-acceptor) domain J3U87_21640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_21655 PF01556 DnaJ C terminal domain J3U87_21655 PF00226 DnaJ domain J3U87_21655 PF00684 DnaJ central domain J3U87_21665 PF00012 Hsp70 protein J3U87_21685 PF00581 Rhodanese-like domain J3U87_21685 PF00899 ThiF family J3U87_21710 PF00282 Pyridoxal-dependent decarboxylase conserved domain J3U87_21715 PF00557 Metallopeptidase family M24 J3U87_21750 PF00156 Phosphoribosyl transferase domain J3U87_21770 PF04542 Sigma-70 region 2 J3U87_21770 PF08281 Sigma-70, region 4 J3U87_21780 PF00202 Aminotransferase class-III J3U87_21780 PF04055 Radical SAM superfamily J3U87_21780 PF06968 Biotin and Thiamin Synthesis associated domain J3U87_21785 PF02310 B12 binding domain J3U87_21785 PF02965 Vitamin B12 dependent methionine synthase, activation domain J3U87_21785 PF02607 B12 binding domain J3U87_21785 PF00809 Pterin binding enzyme J3U87_21785 PF02574 Homocysteine S-methyltransferase J3U87_21790 PF00700 Bacterial flagellin C-terminal helical region J3U87_21790 PF00669 Bacterial flagellin N-terminal helical region J3U87_21815 PF00578 AhpC/TSA family J3U87_21820 PF01370 NAD dependent epimerase/dehydratase family J3U87_21820 PF08338 Domain of unknown function (DUF1731) J3U87_21825 PF00487 Fatty acid desaturase J3U87_21835 PF01476 LysM domain J3U87_21835 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J3U87_21845 PF13396 Phospholipase_D-nuclease N-terminal J3U87_21845 PF13091 PLD-like domain J3U87_21855 PF13091 PLD-like domain J3U87_21855 PF13396 Phospholipase_D-nuclease N-terminal J3U87_21865 PF08264 Anticodon-binding domain of tRNA J3U87_21865 PF01588 Putative tRNA binding domain J3U87_21865 PF09334 tRNA synthetases class I (M) J3U87_21870 PF00512 His Kinase A (phospho-acceptor) domain J3U87_21870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_21880 PF04748 Divergent polysaccharide deacetylase J3U87_21885 PF01040 UbiA prenyltransferase family J3U87_21890 PF00575 S1 RNA binding domain J3U87_21895 PF00293 NUDIX domain J3U87_21905 PF10397 Adenylosuccinate lyase C-terminus J3U87_21905 PF00206 Lyase J3U87_21920 PF00069 Protein kinase domain J3U87_21920 PF03793 PASTA domain J3U87_21930 PF17676 LD-carboxypeptidase C-terminal domain J3U87_21930 PF02016 LD-carboxypeptidase N-terminal domain J3U87_21940 PF00069 Protein kinase domain J3U87_21940 PF03793 PASTA domain J3U87_21975 PF13005 zinc-finger binding domain of transposase IS66 J3U87_21975 PF13007 Transposase C of IS166 homeodomain J3U87_21975 PF13817 IS66 C-terminal element J3U87_21975 PF03050 Transposase IS66 family J3U87_21985 PF03793 PASTA domain J3U87_21985 PF00069 Protein kinase domain J3U87_21990 PF02254 TrkA-N domain J3U87_21990 PF07885 Ion channel J3U87_21995 PF03190 Protein of unknown function, DUF255 J3U87_22010 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_22010 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_22010 PF08242 Methyltransferase domain J3U87_22010 PF08659 KR domain J3U87_22010 PF00550 Phosphopantetheine attachment site J3U87_22010 PF14765 Polyketide synthase dehydratase J3U87_22010 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_22025 PF07495 Y_Y_Y domain J3U87_22025 PF00072 Response regulator receiver domain J3U87_22025 PF07494 Two component regulator propeller J3U87_22025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_22025 PF12833 Helix-turn-helix domain J3U87_22025 PF00512 His Kinase A (phospho-acceptor) domain J3U87_22075 PF05717 IS66 Orf2 like protein J3U87_22120 PF01695 IstB-like ATP binding protein J3U87_22135 PF03050 Transposase IS66 family J3U87_22135 PF13005 zinc-finger binding domain of transposase IS66 J3U87_22135 PF13007 Transposase C of IS166 homeodomain J3U87_22135 PF13817 IS66 C-terminal element J3U87_22150 PF07411 Domain of unknown function (DUF1508) J3U87_22155 PF01381 Helix-turn-helix J3U87_22165 PF12867 DinB superfamily J3U87_22165 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_22170 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_22175 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_22250 PF03922 OmpW family J3U87_22255 PF00512 His Kinase A (phospho-acceptor) domain J3U87_22255 PF00072 Response regulator receiver domain J3U87_22255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_22255 PF01627 Hpt domain J3U87_22265 PF00005 ABC transporter J3U87_22265 PF02687 FtsX-like permease family J3U87_22265 PF12704 MacB-like periplasmic core domain J3U87_22270 PF12704 MacB-like periplasmic core domain J3U87_22270 PF00005 ABC transporter J3U87_22270 PF02687 FtsX-like permease family J3U87_22275 PF00005 ABC transporter J3U87_22280 PF13533 Biotin-lipoyl like J3U87_22310 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding J3U87_22315 PF03466 LysR substrate binding domain J3U87_22315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_22330 PF12704 MacB-like periplasmic core domain J3U87_22330 PF02687 FtsX-like permease family J3U87_22330 PF00005 ABC transporter J3U87_22340 PF00005 ABC transporter J3U87_22345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_22350 PF13417 Glutathione S-transferase, N-terminal domain J3U87_22355 PF00180 Isocitrate/isopropylmalate dehydrogenase J3U87_22375 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_22375 PF01627 Hpt domain J3U87_22375 PF00072 Response regulator receiver domain J3U87_22375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_22375 PF00512 His Kinase A (phospho-acceptor) domain J3U87_22375 PF00672 HAMP domain J3U87_22415 PF00072 Response regulator receiver domain J3U87_22415 PF04397 LytTr DNA-binding domain J3U87_22420 PF07694 5TMR of 5TMR-LYT J3U87_22420 PF06580 Histidine kinase J3U87_22435 PF16363 GDP-mannose 4,6 dehydratase J3U87_22440 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_22445 PF13302 Acetyltransferase (GNAT) domain J3U87_22480 PF00975 Thioesterase domain J3U87_22480 PF00550 Phosphopantetheine attachment site J3U87_22480 PF00668 Condensation domain J3U87_22480 PF13193 AMP-binding enzyme C-terminal domain J3U87_22480 PF00501 AMP-binding enzyme J3U87_22490 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_22490 PF00069 Protein kinase domain J3U87_22495 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J3U87_22500 PF06715 Gp5 C-terminal repeat (3 copies) J3U87_22500 PF04717 Type VI secretion system, phage-baseplate injector J3U87_22535 PF00400 WD domain, G-beta repeat J3U87_22535 PF00069 Protein kinase domain J3U87_22550 PF13193 AMP-binding enzyme C-terminal domain J3U87_22550 PF00668 Condensation domain J3U87_22550 PF00550 Phosphopantetheine attachment site J3U87_22550 PF00501 AMP-binding enzyme J3U87_22550 PF00550 Phosphopantetheine attachment site J3U87_22550 PF00668 Condensation domain J3U87_22550 PF13193 AMP-binding enzyme C-terminal domain J3U87_22550 PF00501 AMP-binding enzyme J3U87_22555 PF00550 Phosphopantetheine attachment site J3U87_22555 PF07993 Male sterility protein J3U87_22555 PF00501 AMP-binding enzyme J3U87_22555 PF13193 AMP-binding enzyme C-terminal domain J3U87_22555 PF00668 Condensation domain J3U87_22560 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J3U87_22565 PF00550 Phosphopantetheine attachment site J3U87_22565 PF00501 AMP-binding enzyme J3U87_22565 PF00668 Condensation domain J3U87_22565 PF13193 AMP-binding enzyme C-terminal domain J3U87_22570 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J3U87_22575 PF00550 Phosphopantetheine attachment site J3U87_22575 PF00668 Condensation domain J3U87_22575 PF13193 AMP-binding enzyme C-terminal domain J3U87_22575 PF00501 AMP-binding enzyme J3U87_22580 PF07993 Male sterility protein J3U87_22580 PF00501 AMP-binding enzyme J3U87_22580 PF13193 AMP-binding enzyme C-terminal domain J3U87_22580 PF00550 Phosphopantetheine attachment site J3U87_22580 PF00668 Condensation domain J3U87_22585 PF00005 ABC transporter J3U87_22585 PF00664 ABC transporter transmembrane region J3U87_22595 PF00550 Phosphopantetheine attachment site J3U87_22595 PF07993 Male sterility protein J3U87_22595 PF00668 Condensation domain J3U87_22595 PF13193 AMP-binding enzyme C-terminal domain J3U87_22595 PF00501 AMP-binding enzyme J3U87_22605 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_22605 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_22605 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_22605 PF03413 Peptidase propeptide and YPEB domain J3U87_22605 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_22625 PF00132 Bacterial transferase hexapeptide (six repeats) J3U87_22645 PF13193 AMP-binding enzyme C-terminal domain J3U87_22645 PF00501 AMP-binding enzyme J3U87_22660 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J3U87_22670 PF06594 Haemolysin-type calcium binding protein related domain J3U87_22670 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J3U87_22675 PF03352 Methyladenine glycosylase J3U87_22700 PF08281 Sigma-70, region 4 J3U87_22700 PF04542 Sigma-70 region 2 J3U87_22700 PF12680 SnoaL-like domain J3U87_22705 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_22710 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J3U87_22710 PF00326 Prolyl oligopeptidase family J3U87_22730 PF07411 Domain of unknown function (DUF1508) J3U87_22760 PF03793 PASTA domain J3U87_22760 PF00069 Protein kinase domain J3U87_22775 PF00072 Response regulator receiver domain J3U87_22775 PF00486 Transcriptional regulatory protein, C terminal J3U87_22780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_22780 PF01590 GAF domain J3U87_22780 PF00512 His Kinase A (phospho-acceptor) domain J3U87_22780 PF08446 PAS fold J3U87_22780 PF00360 Phytochrome region J3U87_22785 PF00990 Diguanylate cyclase, GGDEF domain J3U87_22785 PF00563 EAL domain J3U87_22785 PF03707 Bacterial signalling protein N terminal repeat J3U87_22825 PF13537 Glutamine amidotransferase domain J3U87_22825 PF00733 Asparagine synthase J3U87_22840 PF00512 His Kinase A (phospho-acceptor) domain J3U87_22840 PF18415 Histidine kinase receptor ArcB trans-membrane domain J3U87_22840 PF01627 Hpt domain J3U87_22840 PF00989 PAS fold J3U87_22840 PF00072 Response regulator receiver domain J3U87_22840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_22850 PF03150 Di-haem cytochrome c peroxidase J3U87_22850 PF00034 Cytochrome c J3U87_22865 PF02743 Cache domain J3U87_22865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_22865 PF00672 HAMP domain J3U87_22870 PF00529 HlyD membrane-fusion protein of T1SS J3U87_22870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_22875 PF00873 AcrB/AcrD/AcrF family J3U87_22880 PF02321 Outer membrane efflux protein J3U87_22885 PF07885 Ion channel J3U87_22885 PF00027 Cyclic nucleotide-binding domain J3U87_22890 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_22930 PF01047 MarR family J3U87_22935 PF02566 OsmC-like protein J3U87_22945 PF00672 HAMP domain J3U87_22945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_23025 PF10425 C-terminus of bacterial fibrinogen-binding adhesin J3U87_23025 PF04650 YSIRK type signal peptide J3U87_23025 PF17210 SdrD B-like domain J3U87_23025 PF17961 Bacterial Ig domain J3U87_23025 PF00746 LPXTG cell wall anchor motif J3U87_23030 PF03264 NapC/NirT cytochrome c family, N-terminal region J3U87_23035 PF02335 Cytochrome c552 J3U87_23050 PF04397 LytTr DNA-binding domain J3U87_23050 PF00072 Response regulator receiver domain J3U87_23055 PF06580 Histidine kinase J3U87_23055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_23055 PF07694 5TMR of 5TMR-LYT J3U87_23065 PF07715 TonB-dependent Receptor Plug Domain J3U87_23065 PF00593 TonB dependent receptor J3U87_23085 PF00486 Transcriptional regulatory protein, C terminal J3U87_23090 PF01979 Amidohydrolase family J3U87_23100 PF07715 TonB-dependent Receptor Plug Domain J3U87_23100 PF00593 TonB dependent receptor J3U87_23125 PF02678 Pirin J3U87_23125 PF05726 Pirin C-terminal cupin domain J3U87_23130 PF17149 Periplasmic sensor domain found in signal transduction proteins J3U87_23130 PF00672 HAMP domain J3U87_23130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_23130 PF01627 Hpt domain J3U87_23130 PF00512 His Kinase A (phospho-acceptor) domain J3U87_23130 PF00072 Response regulator receiver domain J3U87_23135 PF00106 short chain dehydrogenase J3U87_23150 PF04231 Endonuclease I J3U87_23170 PF01883 Iron-sulfur cluster assembly protein J3U87_23170 PF10609 NUBPL iron-transfer P-loop NTPase J3U87_23210 PF00115 Cytochrome C and Quinol oxidase polypeptide I J3U87_23215 PF00510 Cytochrome c oxidase subunit III J3U87_23235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J3U87_23235 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J3U87_23240 PF01593 Flavin containing amine oxidoreductase J3U87_23245 PF04055 Radical SAM superfamily J3U87_23245 PF13186 Iron-sulfur cluster-binding domain J3U87_23275 PF00440 Bacterial regulatory proteins, tetR family J3U87_23300 PF01037 Lrp/AsnC ligand binding domain J3U87_23305 PF02774 Semialdehyde dehydrogenase, dimerisation domain J3U87_23305 PF01118 Semialdehyde dehydrogenase, NAD binding domain J3U87_23310 PF02545 Maf-like protein J3U87_23315 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J3U87_23320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J3U87_23320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J3U87_23320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J3U87_23320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J3U87_23330 PF02457 DisA bacterial checkpoint controller nucleotide-binding J3U87_23335 PF17820 PDZ domain J3U87_23335 PF13180 PDZ domain J3U87_23350 PF01548 Transposase J3U87_23350 PF02371 Transposase IS116/IS110/IS902 family J3U87_23360 PF00486 Transcriptional regulatory protein, C terminal J3U87_23360 PF18500 CadC C-terminal domain 1 J3U87_23365 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_23365 PF00082 Subtilase family J3U87_23365 PF05922 Peptidase inhibitor I9 J3U87_23375 PF00550 Phosphopantetheine attachment site J3U87_23375 PF00501 AMP-binding enzyme J3U87_23375 PF00202 Aminotransferase class-III J3U87_23375 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_23375 PF13193 AMP-binding enzyme C-terminal domain J3U87_23375 PF00668 Condensation domain J3U87_23375 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_23375 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_23385 PF02666 Phosphatidylserine decarboxylase J3U87_23405 PF11606 Family 31 carbohydrate binding protein J3U87_23420 PF00535 Glycosyl transferase family 2 J3U87_23445 PF02397 Bacterial sugar transferase J3U87_23450 PF03808 Glycosyl transferase WecB/TagA/CpsF family J3U87_23465 PF00072 Response regulator receiver domain J3U87_23465 PF00486 Transcriptional regulatory protein, C terminal J3U87_23485 PF00069 Protein kinase domain J3U87_23485 PF03793 PASTA domain J3U87_23495 PF00069 Protein kinase domain J3U87_23495 PF03793 PASTA domain J3U87_23525 PF13005 zinc-finger binding domain of transposase IS66 J3U87_23525 PF13817 IS66 C-terminal element J3U87_23525 PF03050 Transposase IS66 family J3U87_23525 PF13007 Transposase C of IS166 homeodomain J3U87_23560 PF00239 Resolvase, N terminal domain J3U87_23560 PF02796 Helix-turn-helix domain of resolvase J3U87_23590 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_23595 PF00570 HRDC domain J3U87_23595 PF00270 DEAD/DEAH box helicase J3U87_23595 PF00271 Helicase conserved C-terminal domain J3U87_23595 PF16124 RecQ zinc-binding J3U87_23595 PF09382 RQC domain J3U87_23610 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_23685 PF01695 IstB-like ATP binding protein J3U87_23935 PF02913 FAD linked oxidases, C-terminal domain J3U87_23935 PF01565 FAD binding domain J3U87_23940 PF00155 Aminotransferase class I and II J3U87_23940 PF00392 Bacterial regulatory proteins, gntR family J3U87_23945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_23945 PF00072 Response regulator receiver domain J3U87_23945 PF00512 His Kinase A (phospho-acceptor) domain J3U87_23945 PF09308 LuxQ, periplasmic J3U87_23960 PF01590 GAF domain J3U87_23960 PF00158 Sigma-54 interaction domain J3U87_23965 PF00115 Cytochrome C and Quinol oxidase polypeptide I J3U87_23990 PF01171 PP-loop family J3U87_23990 PF11734 TilS substrate C-terminal domain J3U87_23990 PF09179 TilS substrate binding domain J3U87_23995 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_23995 PF01434 Peptidase family M41 J3U87_23995 PF06480 FtsH Extracellular J3U87_23995 PF17862 AAA+ lid domain J3U87_24005 PF00664 ABC transporter transmembrane region J3U87_24005 PF00005 ABC transporter J3U87_24030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_24035 PF00873 AcrB/AcrD/AcrF family J3U87_24040 PF02321 Outer membrane efflux protein J3U87_24055 PF00072 Response regulator receiver domain J3U87_24055 PF04397 LytTr DNA-binding domain J3U87_24065 PF01965 DJ-1/PfpI family J3U87_24085 PF04542 Sigma-70 region 2 J3U87_24085 PF08281 Sigma-70, region 4 J3U87_24090 PF03795 YCII-related domain J3U87_24100 PF16868 NMT1-like family J3U87_24105 PF12419 SNF2 Helicase protein J3U87_24105 PF00271 Helicase conserved C-terminal domain J3U87_24105 PF00176 SNF2 family N-terminal domain J3U87_24140 PF00069 Protein kinase domain J3U87_24140 PF03793 PASTA domain J3U87_24145 PF00072 Response regulator receiver domain J3U87_24145 PF00158 Sigma-54 interaction domain J3U87_24145 PF02954 Bacterial regulatory protein, Fis family J3U87_24160 PF03466 LysR substrate binding domain J3U87_24160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_24165 PF00982 Glycosyltransferase family 20 J3U87_24170 PF00723 Glycosyl hydrolases family 15 J3U87_24175 PF00392 Bacterial regulatory proteins, gntR family J3U87_24175 PF00155 Aminotransferase class I and II J3U87_24180 PF02567 Phenazine biosynthesis-like protein J3U87_24200 PF02843 Phosphoribosylglycinamide synthetase, C domain J3U87_24200 PF02844 Phosphoribosylglycinamide synthetase, N domain J3U87_24200 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J3U87_24205 PF02803 Thiolase, C-terminal domain J3U87_24205 PF00108 Thiolase, N-terminal domain J3U87_24210 PF02403 Seryl-tRNA synthetase N-terminal domain J3U87_24210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J3U87_24220 PF01871 AMMECR1 J3U87_24220 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J3U87_24240 PF00072 Response regulator receiver domain J3U87_24240 PF01627 Hpt domain J3U87_24240 PF00512 His Kinase A (phospho-acceptor) domain J3U87_24240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24265 PF07730 Histidine kinase J3U87_24265 PF05384 Sensor protein DegS J3U87_24275 PF00196 Bacterial regulatory proteins, luxR family J3U87_24275 PF00072 Response regulator receiver domain J3U87_24285 PF01740 STAS domain J3U87_24285 PF00916 Sulfate permease family J3U87_24315 PF13614 AAA domain J3U87_24320 PF02954 Bacterial regulatory protein, Fis family J3U87_24320 PF00072 Response regulator receiver domain J3U87_24320 PF00158 Sigma-54 interaction domain J3U87_24355 PF00069 Protein kinase domain J3U87_24355 PF03793 PASTA domain J3U87_24360 PF00512 His Kinase A (phospho-acceptor) domain J3U87_24360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24360 PF00672 HAMP domain J3U87_24365 PF00486 Transcriptional regulatory protein, C terminal J3U87_24365 PF00072 Response regulator receiver domain J3U87_24385 PF00392 Bacterial regulatory proteins, gntR family J3U87_24385 PF00155 Aminotransferase class I and II J3U87_24405 PF00501 AMP-binding enzyme J3U87_24410 PF01554 MatE J3U87_24435 PF03129 Anticodon binding domain J3U87_24435 PF13393 Histidyl-tRNA synthetase J3U87_24440 PF00005 ABC transporter J3U87_24455 PF02810 SEC-C motif J3U87_24465 PF00072 Response regulator receiver domain J3U87_24465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24465 PF00512 His Kinase A (phospho-acceptor) domain J3U87_24465 PF13426 PAS domain J3U87_24465 PF08448 PAS fold J3U87_24470 PF00486 Transcriptional regulatory protein, C terminal J3U87_24470 PF00072 Response regulator receiver domain J3U87_24480 PF01804 Penicillin amidase J3U87_24485 PF00155 Aminotransferase class I and II J3U87_24485 PF00392 Bacterial regulatory proteins, gntR family J3U87_24490 PF00282 Pyridoxal-dependent decarboxylase conserved domain J3U87_24505 PF12852 Cupin J3U87_24505 PF12833 Helix-turn-helix domain J3U87_24515 PF05128 Domain of unknown function (DUF697) J3U87_24525 PF00072 Response regulator receiver domain J3U87_24530 PF02954 Bacterial regulatory protein, Fis family J3U87_24530 PF00158 Sigma-54 interaction domain J3U87_24530 PF00072 Response regulator receiver domain J3U87_24535 PF03705 CheR methyltransferase, all-alpha domain J3U87_24535 PF01739 CheR methyltransferase, SAM binding domain J3U87_24540 PF01339 CheB methylesterase J3U87_24540 PF00072 Response regulator receiver domain J3U87_24545 PF01584 CheW-like domain J3U87_24550 PF00672 HAMP domain J3U87_24550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_24550 PF12729 Four helix bundle sensory module for signal transduction J3U87_24555 PF01584 CheW-like domain J3U87_24555 PF02895 Signal transducing histidine kinase, homodimeric domain J3U87_24555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24555 PF01627 Hpt domain J3U87_24555 PF00072 Response regulator receiver domain J3U87_24565 PF01293 Phosphoenolpyruvate carboxykinase J3U87_24590 PF00069 Protein kinase domain J3U87_24590 PF03793 PASTA domain J3U87_24610 PF16736 Single Cache-like J3U87_24610 PF00512 His Kinase A (phospho-acceptor) domain J3U87_24610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24610 PF00989 PAS fold J3U87_24615 PF00072 Response regulator receiver domain J3U87_24615 PF00486 Transcriptional regulatory protein, C terminal J3U87_24620 PF06719 AraC-type transcriptional regulator N-terminus J3U87_24620 PF12833 Helix-turn-helix domain J3U87_24680 PF06715 Gp5 C-terminal repeat (3 copies) J3U87_24680 PF04717 Type VI secretion system, phage-baseplate injector J3U87_24695 PF04235 Protein of unknown function (DUF418) J3U87_24700 PF00392 Bacterial regulatory proteins, gntR family J3U87_24705 PF00005 ABC transporter J3U87_24720 PF00975 Thioesterase domain J3U87_24720 PF00550 Phosphopantetheine attachment site J3U87_24720 PF13193 AMP-binding enzyme C-terminal domain J3U87_24720 PF00668 Condensation domain J3U87_24720 PF00501 AMP-binding enzyme J3U87_24725 PF13193 AMP-binding enzyme C-terminal domain J3U87_24725 PF00501 AMP-binding enzyme J3U87_24725 PF00550 Phosphopantetheine attachment site J3U87_24725 PF00975 Thioesterase domain J3U87_24725 PF00668 Condensation domain J3U87_24730 PF00501 AMP-binding enzyme J3U87_24730 PF13193 AMP-binding enzyme C-terminal domain J3U87_24730 PF00975 Thioesterase domain J3U87_24730 PF00550 Phosphopantetheine attachment site J3U87_24730 PF00668 Condensation domain J3U87_24735 PF00550 Phosphopantetheine attachment site J3U87_24735 PF00668 Condensation domain J3U87_24735 PF00501 AMP-binding enzyme J3U87_24735 PF07993 Male sterility protein J3U87_24735 PF13193 AMP-binding enzyme C-terminal domain J3U87_24740 PF00668 Condensation domain J3U87_24740 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_24740 PF00698 Acyl transferase domain J3U87_24740 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_24740 PF00550 Phosphopantetheine attachment site J3U87_24740 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_24745 PF00501 AMP-binding enzyme J3U87_24745 PF00550 Phosphopantetheine attachment site J3U87_24745 PF07993 Male sterility protein J3U87_24745 PF00668 Condensation domain J3U87_24745 PF13193 AMP-binding enzyme C-terminal domain J3U87_24750 PF00550 Phosphopantetheine attachment site J3U87_24750 PF00501 AMP-binding enzyme J3U87_24750 PF00668 Condensation domain J3U87_24750 PF13193 AMP-binding enzyme C-terminal domain J3U87_24755 PF00550 Phosphopantetheine attachment site J3U87_24755 PF07993 Male sterility protein J3U87_24755 PF00668 Condensation domain J3U87_24755 PF00501 AMP-binding enzyme J3U87_24755 PF13193 AMP-binding enzyme C-terminal domain J3U87_24760 PF00501 AMP-binding enzyme J3U87_24770 PF00005 ABC transporter J3U87_24775 PF03707 Bacterial signalling protein N terminal repeat J3U87_24775 PF00990 Diguanylate cyclase, GGDEF domain J3U87_24775 PF00563 EAL domain J3U87_24780 PF00072 Response regulator receiver domain J3U87_24785 PF00989 PAS fold J3U87_24785 PF00512 His Kinase A (phospho-acceptor) domain J3U87_24785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24810 PF00672 HAMP domain J3U87_24810 PF00512 His Kinase A (phospho-acceptor) domain J3U87_24810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24810 PF18698 Histidine kinase sensor domain J3U87_24815 PF00072 Response regulator receiver domain J3U87_24815 PF00486 Transcriptional regulatory protein, C terminal J3U87_24825 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J3U87_24825 PF00400 WD domain, G-beta repeat J3U87_24835 PF03150 Di-haem cytochrome c peroxidase J3U87_24835 PF00034 Cytochrome c J3U87_24845 PF01053 Cys/Met metabolism PLP-dependent enzyme J3U87_24870 PF12833 Helix-turn-helix domain J3U87_24870 PF02311 AraC-like ligand binding domain J3U87_24875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J3U87_24875 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J3U87_24880 PF00977 Histidine biosynthesis protein J3U87_24885 PF07690 Major Facilitator Superfamily J3U87_24895 PF00857 Isochorismatase family J3U87_24900 PF03466 LysR substrate binding domain J3U87_24900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_24930 PF07238 PilZ domain J3U87_24930 PF00069 Protein kinase domain J3U87_24935 PF00512 His Kinase A (phospho-acceptor) domain J3U87_24935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_24935 PF00672 HAMP domain J3U87_24940 PF00072 Response regulator receiver domain J3U87_24940 PF00486 Transcriptional regulatory protein, C terminal J3U87_24945 PF01593 Flavin containing amine oxidoreductase J3U87_24960 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_24960 PF12867 DinB superfamily J3U87_24970 PF00484 Carbonic anhydrase J3U87_24975 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal J3U87_24975 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal J3U87_24980 PF00550 Phosphopantetheine attachment site J3U87_24985 PF03793 PASTA domain J3U87_24985 PF00069 Protein kinase domain J3U87_25030 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_25030 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_25030 PF03413 Peptidase propeptide and YPEB domain J3U87_25030 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_25030 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_25030 PF03413 Peptidase propeptide and YPEB domain J3U87_25030 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_25030 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_25030 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_25030 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_25035 PF00072 Response regulator receiver domain J3U87_25035 PF04397 LytTr DNA-binding domain J3U87_25040 PF07694 5TMR of 5TMR-LYT J3U87_25040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_25040 PF06580 Histidine kinase J3U87_25080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_25080 PF00512 His Kinase A (phospho-acceptor) domain J3U87_25080 PF12833 Helix-turn-helix domain J3U87_25080 PF07494 Two component regulator propeller J3U87_25080 PF07495 Y_Y_Y domain J3U87_25080 PF00072 Response regulator receiver domain J3U87_25090 PF03793 PASTA domain J3U87_25090 PF00069 Protein kinase domain J3U87_25100 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain J3U87_25100 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain J3U87_25100 PF18413 Neuraminidase-like domain J3U87_25100 PF18413 Neuraminidase-like domain J3U87_25105 PF18807 Tripartite Tc toxins repeat J3U87_25105 PF05785 Rho-activating domain of cytotoxic necrotizing factor J3U87_25130 PF04542 Sigma-70 region 2 J3U87_25130 PF08281 Sigma-70, region 4 J3U87_25130 PF12680 SnoaL-like domain J3U87_25135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3U87_25150 PF01590 GAF domain J3U87_25150 PF00158 Sigma-54 interaction domain J3U87_25150 PF02954 Bacterial regulatory protein, Fis family J3U87_25155 PF00550 Phosphopantetheine attachment site J3U87_25155 PF00501 AMP-binding enzyme J3U87_25155 PF13193 AMP-binding enzyme C-terminal domain J3U87_25155 PF00501 AMP-binding enzyme J3U87_25155 PF00668 Condensation domain J3U87_25155 PF13193 AMP-binding enzyme C-terminal domain J3U87_25155 PF00550 Phosphopantetheine attachment site J3U87_25155 PF00668 Condensation domain J3U87_25165 PF03793 PASTA domain J3U87_25165 PF00069 Protein kinase domain J3U87_25200 PF00072 Response regulator receiver domain J3U87_25200 PF01627 Hpt domain J3U87_25200 PF18415 Histidine kinase receptor ArcB trans-membrane domain J3U87_25200 PF00512 His Kinase A (phospho-acceptor) domain J3U87_25200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_25200 PF00989 PAS fold J3U87_25205 PF03793 PASTA domain J3U87_25205 PF00069 Protein kinase domain J3U87_25210 PF00069 Protein kinase domain J3U87_25210 PF03793 PASTA domain J3U87_25215 PF02371 Transposase IS116/IS110/IS902 family J3U87_25215 PF01548 Transposase J3U87_25225 PF03527 RHS protein J3U87_25225 PF05593 RHS Repeat J3U87_25235 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J3U87_25250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_25250 PF03466 LysR substrate binding domain J3U87_25300 PF00005 ABC transporter J3U87_25305 PF00668 Condensation domain J3U87_25305 PF00668 Condensation domain J3U87_25305 PF13193 AMP-binding enzyme C-terminal domain J3U87_25305 PF00501 AMP-binding enzyme J3U87_25305 PF00550 Phosphopantetheine attachment site J3U87_25305 PF13193 AMP-binding enzyme C-terminal domain J3U87_25305 PF00501 AMP-binding enzyme J3U87_25305 PF00550 Phosphopantetheine attachment site J3U87_25310 PF00550 Phosphopantetheine attachment site J3U87_25310 PF13193 AMP-binding enzyme C-terminal domain J3U87_25310 PF00501 AMP-binding enzyme J3U87_25310 PF00668 Condensation domain J3U87_25315 PF00668 Condensation domain J3U87_25315 PF00501 AMP-binding enzyme J3U87_25315 PF13193 AMP-binding enzyme C-terminal domain J3U87_25315 PF00550 Phosphopantetheine attachment site J3U87_25320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3U87_25325 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal J3U87_25325 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal J3U87_25345 PF07715 TonB-dependent Receptor Plug Domain J3U87_25355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J3U87_25355 PF00205 Thiamine pyrophosphate enzyme, central domain J3U87_25355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J3U87_25360 PF07715 TonB-dependent Receptor Plug Domain J3U87_25360 PF00593 TonB dependent receptor J3U87_25380 PF03793 PASTA domain J3U87_25380 PF00069 Protein kinase domain J3U87_25385 PF02743 Cache domain J3U87_25385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_25385 PF00672 HAMP domain J3U87_25425 PF00797 N-acetyltransferase J3U87_25445 PF01979 Amidohydrolase family J3U87_25450 PF13409 Glutathione S-transferase, N-terminal domain J3U87_25455 PF13193 AMP-binding enzyme C-terminal domain J3U87_25455 PF00975 Thioesterase domain J3U87_25455 PF00501 AMP-binding enzyme J3U87_25455 PF00668 Condensation domain J3U87_25455 PF00550 Phosphopantetheine attachment site J3U87_25465 PF09844 Uncharacterized conserved protein (COG2071) J3U87_25475 PF01497 Periplasmic binding protein J3U87_25495 PF00512 His Kinase A (phospho-acceptor) domain J3U87_25495 PF00672 HAMP domain J3U87_25495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_25495 PF00989 PAS fold J3U87_25500 PF00990 Diguanylate cyclase, GGDEF domain J3U87_25500 PF00072 Response regulator receiver domain J3U87_25510 PF02743 Cache domain J3U87_25510 PF00672 HAMP domain J3U87_25510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_25520 PF13614 AAA domain J3U87_25540 PF03793 PASTA domain J3U87_25540 PF00069 Protein kinase domain J3U87_25550 PF01425 Amidase J3U87_25565 PF07715 TonB-dependent Receptor Plug Domain J3U87_25565 PF00593 TonB dependent receptor J3U87_25575 PF00069 Protein kinase domain J3U87_25575 PF07238 PilZ domain J3U87_25600 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J3U87_25600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J3U87_25605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_25605 PF03466 LysR substrate binding domain J3U87_25635 PF00069 Protein kinase domain J3U87_25635 PF03793 PASTA domain J3U87_25645 PF03466 LysR substrate binding domain J3U87_25645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_25665 PF11954 Domain of unknown function (DUF3471) J3U87_25665 PF00144 Beta-lactamase J3U87_25670 PF10503 Esterase PHB depolymerase J3U87_25690 PF08281 Sigma-70, region 4 J3U87_25690 PF04542 Sigma-70 region 2 J3U87_25700 PF06445 GyrI-like small molecule binding domain J3U87_25700 PF12833 Helix-turn-helix domain J3U87_25710 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J3U87_25780 PF12833 Helix-turn-helix domain J3U87_25795 PF07715 TonB-dependent Receptor Plug Domain J3U87_25795 PF00593 TonB dependent receptor J3U87_25850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_25850 PF03466 LysR substrate binding domain J3U87_25870 PF00034 Cytochrome c J3U87_25870 PF03150 Di-haem cytochrome c peroxidase J3U87_25920 PF00106 short chain dehydrogenase J3U87_25930 PF13411 MerR HTH family regulatory protein J3U87_25935 PF01042 Endoribonuclease L-PSP J3U87_25950 PF17760 UvrA interaction domain J3U87_25950 PF17755 UvrA DNA-binding domain J3U87_25975 PF00069 Protein kinase domain J3U87_25975 PF03793 PASTA domain J3U87_25980 PF12833 Helix-turn-helix domain J3U87_25985 PF16123 Hydroxyacylglutathione hydrolase C-terminus J3U87_25985 PF00753 Metallo-beta-lactamase superfamily J3U87_25990 PF00041 Fibronectin type III domain J3U87_25990 PF02011 Glycosyl hydrolase family 48 J3U87_25990 PF00553 Cellulose binding domain J3U87_25995 PF00069 Protein kinase domain J3U87_25995 PF03793 PASTA domain J3U87_26005 PF13649 Methyltransferase domain J3U87_26010 PF01810 LysE type translocator J3U87_26015 PF10114 Sensory domain found in PocR J3U87_26015 PF12833 Helix-turn-helix domain J3U87_26040 PF03466 LysR substrate binding domain J3U87_26040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_26055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_26055 PF03466 LysR substrate binding domain J3U87_26060 PF00857 Isochorismatase family J3U87_26065 PF02678 Pirin J3U87_26065 PF17954 Quercetinase C-terminal cupin domain J3U87_26075 PF00990 Diguanylate cyclase, GGDEF domain J3U87_26080 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J3U87_26085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26085 PF00672 HAMP domain J3U87_26085 PF13426 PAS domain J3U87_26085 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26105 PF00990 Diguanylate cyclase, GGDEF domain J3U87_26110 PF01435 Peptidase family M48 J3U87_26115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26115 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26115 PF09308 LuxQ, periplasmic J3U87_26115 PF00072 Response regulator receiver domain J3U87_26120 PF00085 Thioredoxin J3U87_26130 PF08668 HDOD domain J3U87_26130 PF00563 EAL domain J3U87_26135 PF02690 Na+/Pi-cotransporter J3U87_26145 PF03631 Virulence factor BrkB J3U87_26160 PF00092 von Willebrand factor type A domain J3U87_26225 PF00486 Transcriptional regulatory protein, C terminal J3U87_26225 PF00072 Response regulator receiver domain J3U87_26230 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26230 PF00989 PAS fold J3U87_26230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26235 PF00561 alpha/beta hydrolase fold J3U87_26255 PF12704 MacB-like periplasmic core domain J3U87_26255 PF02687 FtsX-like permease family J3U87_26255 PF00005 ABC transporter J3U87_26260 PF00005 ABC transporter J3U87_26260 PF12704 MacB-like periplasmic core domain J3U87_26260 PF02687 FtsX-like permease family J3U87_26265 PF02954 Bacterial regulatory protein, Fis family J3U87_26265 PF00072 Response regulator receiver domain J3U87_26265 PF00158 Sigma-54 interaction domain J3U87_26270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26270 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26275 PF00141 Peroxidase J3U87_26280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_26280 PF03466 LysR substrate binding domain J3U87_26285 PF00378 Enoyl-CoA hydratase/isomerase J3U87_26300 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26300 PF12833 Helix-turn-helix domain J3U87_26300 PF00072 Response regulator receiver domain J3U87_26300 PF07494 Two component regulator propeller J3U87_26300 PF07495 Y_Y_Y domain J3U87_26300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26305 PF02687 FtsX-like permease family J3U87_26305 PF00005 ABC transporter J3U87_26305 PF12704 MacB-like periplasmic core domain J3U87_26310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26310 PF01590 GAF domain J3U87_26310 PF00360 Phytochrome region J3U87_26310 PF08446 PAS fold J3U87_26320 PF00684 DnaJ central domain J3U87_26320 PF01556 DnaJ C terminal domain J3U87_26320 PF00226 DnaJ domain J3U87_26325 PF09297 NADH pyrophosphatase zinc ribbon domain J3U87_26325 PF00293 NUDIX domain J3U87_26330 PF01467 Cytidylyltransferase-like J3U87_26330 PF00294 pfkB family carbohydrate kinase J3U87_26335 PF00902 Sec-independent protein translocase protein (TatC) J3U87_26340 PF02416 mttA/Hcf106 family J3U87_26350 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_26365 PF06719 AraC-type transcriptional regulator N-terminus J3U87_26365 PF12833 Helix-turn-helix domain J3U87_26380 PF07495 Y_Y_Y domain J3U87_26380 PF00072 Response regulator receiver domain J3U87_26380 PF07494 Two component regulator propeller J3U87_26380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26380 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26380 PF12833 Helix-turn-helix domain J3U87_26385 PF08000 Bacterial PH domain J3U87_26400 PF00069 Protein kinase domain J3U87_26400 PF03793 PASTA domain J3U87_26405 PF12706 Beta-lactamase superfamily domain J3U87_26405 PF00753 Metallo-beta-lactamase superfamily J3U87_26410 PF03707 Bacterial signalling protein N terminal repeat J3U87_26410 PF00563 EAL domain J3U87_26410 PF00990 Diguanylate cyclase, GGDEF domain J3U87_26415 PF01979 Amidohydrolase family J3U87_26415 PF13382 Adenine deaminase C-terminal domain J3U87_26425 PF05552 Conserved TM helix J3U87_26425 PF00924 Mechanosensitive ion channel J3U87_26435 PF00069 Protein kinase domain J3U87_26435 PF07238 PilZ domain J3U87_26445 PF02472 Biopolymer transport protein ExbD/TolR J3U87_26455 PF00801 PKD domain J3U87_26455 PF05547 Immune inhibitor A peptidase M6 J3U87_26470 PF00563 EAL domain J3U87_26470 PF00990 Diguanylate cyclase, GGDEF domain J3U87_26470 PF03707 Bacterial signalling protein N terminal repeat J3U87_26475 PF00561 alpha/beta hydrolase fold J3U87_26485 PF00975 Thioesterase domain J3U87_26515 PF03848 Tellurite resistance protein TehB J3U87_26535 PF16347 Domain of unknown function (DUF4976) J3U87_26535 PF00884 Sulfatase J3U87_26545 PF03562 MltA specific insert domain J3U87_26545 PF06725 3D domain J3U87_26550 PF01980 tRNA-methyltransferase O J3U87_26550 PF18389 TrmO C-terminal domain J3U87_26570 PF00474 Sodium:solute symporter family J3U87_26585 PF00072 Response regulator receiver domain J3U87_26585 PF00158 Sigma-54 interaction domain J3U87_26585 PF02954 Bacterial regulatory protein, Fis family J3U87_26590 PF00672 HAMP domain J3U87_26590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26610 PF07995 Glucose / Sorbosone dehydrogenase J3U87_26615 PF03841 L-seryl-tRNA selenium transferase J3U87_26615 PF12390 Selenocysteine synthase N terminal J3U87_26630 PF01165 Ribosomal protein S21 J3U87_26640 PF00672 HAMP domain J3U87_26640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_26640 PF02743 Cache domain J3U87_26650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26650 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26660 PF00158 Sigma-54 interaction domain J3U87_26660 PF00072 Response regulator receiver domain J3U87_26680 PF00990 Diguanylate cyclase, GGDEF domain J3U87_26680 PF03707 Bacterial signalling protein N terminal repeat J3U87_26680 PF00563 EAL domain J3U87_26710 PF03060 Nitronate monooxygenase J3U87_26710 PF00698 Acyl transferase domain J3U87_26730 PF00069 Protein kinase domain J3U87_26730 PF03793 PASTA domain J3U87_26735 PF00111 2Fe-2S iron-sulfur cluster binding domain J3U87_26735 PF01799 [2Fe-2S] binding domain J3U87_26740 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J3U87_26745 PF08713 DNA alkylation repair enzyme J3U87_26750 PF01627 Hpt domain J3U87_26750 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26750 PF00672 HAMP domain J3U87_26750 PF00072 Response regulator receiver domain J3U87_26750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_26760 PF02592 Putative vitamin uptake transporter J3U87_26765 PF07070 SpoOM protein J3U87_26785 PF00462 Glutaredoxin J3U87_26795 PF00877 NlpC/P60 family J3U87_26795 PF01476 LysM domain J3U87_26825 PF00672 HAMP domain J3U87_26825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26825 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26830 PF00072 Response regulator receiver domain J3U87_26830 PF00486 Transcriptional regulatory protein, C terminal J3U87_26835 PF02190 ATP-dependent protease La (LON) substrate-binding domain J3U87_26835 PF05362 Lon protease (S16) C-terminal proteolytic domain J3U87_26835 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_26840 PF00282 Pyridoxal-dependent decarboxylase conserved domain J3U87_26865 PF00069 Protein kinase domain J3U87_26865 PF03793 PASTA domain J3U87_26895 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26895 PF09456 RcsC Alpha-Beta-Loop (ABL) J3U87_26895 PF00072 Response regulator receiver domain J3U87_26905 PF00082 Subtilase family J3U87_26905 PF05922 Peptidase inhibitor I9 J3U87_26905 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_26910 PF02578 Multi-copper polyphenol oxidoreductase laccase J3U87_26915 PF01207 Dihydrouridine synthase (Dus) J3U87_26925 PF13180 PDZ domain J3U87_26925 PF03572 Peptidase family S41 J3U87_26935 PF00440 Bacterial regulatory proteins, tetR family J3U87_26940 PF01451 Low molecular weight phosphotyrosine protein phosphatase J3U87_26945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_26945 PF00672 HAMP domain J3U87_26945 PF02743 Cache domain J3U87_26950 PF01627 Hpt domain J3U87_26950 PF00672 HAMP domain J3U87_26950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26950 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_26950 PF00072 Response regulator receiver domain J3U87_26955 PF00512 His Kinase A (phospho-acceptor) domain J3U87_26955 PF01627 Hpt domain J3U87_26955 PF00072 Response regulator receiver domain J3U87_26955 PF00672 HAMP domain J3U87_26955 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_26955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_26970 PF00106 short chain dehydrogenase J3U87_26975 PF01380 SIS domain J3U87_26985 PF01648 4'-phosphopantetheinyl transferase superfamily J3U87_26990 PF00698 Acyl transferase domain J3U87_26995 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J3U87_26995 PF07676 WD40-like Beta Propeller Repeat J3U87_26995 PF00326 Prolyl oligopeptidase family J3U87_27000 PF01432 Peptidase family M3 J3U87_27010 PF17762 HTH domain found in ParB protein J3U87_27010 PF02195 ParB-like nuclease domain J3U87_27015 PF13614 AAA domain J3U87_27020 PF04055 Radical SAM superfamily J3U87_27020 PF01938 TRAM domain J3U87_27020 PF00919 Uncharacterized protein family UPF0004 J3U87_27030 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J3U87_27030 PF02811 PHP domain J3U87_27030 PF07733 Bacterial DNA polymerase III alpha NTPase domain J3U87_27030 PF01336 OB-fold nucleic acid binding domain J3U87_27030 PF14579 Helix-hairpin-helix motif J3U87_27035 PF07650 KH domain J3U87_27035 PF01926 50S ribosome-binding GTPase J3U87_27040 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_27040 PF16193 AAA C-terminal domain J3U87_27040 PF12002 MgsA AAA+ ATPase C terminal J3U87_27045 PF08544 GHMP kinases C terminal J3U87_27045 PF00288 GHMP kinases N terminal domain J3U87_27050 PF01546 Peptidase family M20/M25/M40 J3U87_27050 PF07687 Peptidase dimerisation domain J3U87_27060 PF00005 ABC transporter J3U87_27085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J3U87_27085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J3U87_27090 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J3U87_27090 PF01266 FAD dependent oxidoreductase J3U87_27095 PF02913 FAD linked oxidases, C-terminal domain J3U87_27095 PF01565 FAD binding domain J3U87_27100 PF00392 Bacterial regulatory proteins, gntR family J3U87_27100 PF07840 FadR C-terminal domain J3U87_27105 PF00072 Response regulator receiver domain J3U87_27105 PF01627 Hpt domain J3U87_27105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_27105 PF00672 HAMP domain J3U87_27105 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_27105 PF00512 His Kinase A (phospho-acceptor) domain J3U87_27115 PF00704 Glycosyl hydrolases family 18 J3U87_27115 PF00041 Fibronectin type III domain J3U87_27120 PF00563 EAL domain J3U87_27120 PF01590 GAF domain J3U87_27120 PF00990 Diguanylate cyclase, GGDEF domain J3U87_27120 PF00360 Phytochrome region J3U87_27150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_27150 PF00512 His Kinase A (phospho-acceptor) domain J3U87_27155 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J3U87_27155 PF01872 RibD C-terminal domain J3U87_27160 PF00593 TonB dependent receptor J3U87_27160 PF07715 TonB-dependent Receptor Plug Domain J3U87_27180 PF05922 Peptidase inhibitor I9 J3U87_27180 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_27180 PF00082 Subtilase family J3U87_27185 PF00535 Glycosyl transferase family 2 J3U87_27195 PF14552 Tautomerase enzyme J3U87_27200 PF00571 CBS domain J3U87_27200 PF01595 Cyclin M transmembrane N-terminal domain J3U87_27200 PF03471 Transporter associated domain J3U87_27205 PF01212 Beta-eliminating lyase J3U87_27230 PF04986 Putative transposase J3U87_27230 PF14319 Transposase zinc-binding domain J3U87_27235 PF00589 Phage integrase family J3U87_27235 PF13495 Phage integrase, N-terminal SAM-like domain J3U87_27240 PF00589 Phage integrase family J3U87_27240 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_27245 PF14319 Transposase zinc-binding domain J3U87_27245 PF04986 Putative transposase J3U87_27255 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) J3U87_27260 PF01867 CRISPR associated protein Cas1 J3U87_27265 PF08798 CRISPR associated protein J3U87_27270 PF09704 CRISPR-associated protein (Cas_Cas5) J3U87_27290 PF00271 Helicase conserved C-terminal domain J3U87_27290 PF18019 HD domain J3U87_27290 PF00270 DEAD/DEAH box helicase J3U87_27325 PF00069 Protein kinase domain J3U87_27325 PF03793 PASTA domain J3U87_27355 PF01494 FAD binding domain J3U87_27360 PF04986 Putative transposase J3U87_27360 PF14319 Transposase zinc-binding domain J3U87_27365 PF00589 Phage integrase family J3U87_27365 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_27370 PF00589 Phage integrase family J3U87_27370 PF13495 Phage integrase, N-terminal SAM-like domain J3U87_27390 PF02463 RecF/RecN/SMC N terminal domain J3U87_27400 PF04986 Putative transposase J3U87_27400 PF14319 Transposase zinc-binding domain J3U87_27415 PF00171 Aldehyde dehydrogenase family J3U87_27450 PF12897 Alanine-glyoxylate amino-transferase J3U87_27455 PF17203 Single cache domain 3 J3U87_27455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_27455 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J3U87_27460 PF04542 Sigma-70 region 2 J3U87_27460 PF08281 Sigma-70, region 4 J3U87_27485 PF04389 Peptidase family M28 J3U87_27485 PF02225 PA domain J3U87_27490 PF04717 Type VI secretion system, phage-baseplate injector J3U87_27490 PF06715 Gp5 C-terminal repeat (3 copies) J3U87_27525 PF00535 Glycosyl transferase family 2 J3U87_27535 PF17375 Family of unknown function (DUF5397) J3U87_27555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_27570 PF00990 Diguanylate cyclase, GGDEF domain J3U87_27570 PF00072 Response regulator receiver domain J3U87_27580 PF00593 TonB dependent receptor J3U87_27600 PF00246 Zinc carboxypeptidase J3U87_27610 PF11606 Family 31 carbohydrate binding protein J3U87_27615 PF11606 Family 31 carbohydrate binding protein J3U87_27620 PF07969 Amidohydrolase family J3U87_27630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_27640 PF00474 Sodium:solute symporter family J3U87_27645 PF02254 TrkA-N domain J3U87_27645 PF00999 Sodium/hydrogen exchanger family J3U87_27665 PF04389 Peptidase family M28 J3U87_27670 PF03458 UPF0126 domain J3U87_27675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3U87_27675 PF02874 ATP synthase alpha/beta family, beta-barrel domain J3U87_27675 PF16886 ATPsynthase alpha/beta subunit N-term extension J3U87_27700 PF01813 ATP synthase subunit D J3U87_27705 PF02874 ATP synthase alpha/beta family, beta-barrel domain J3U87_27705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3U87_27710 PF18494 Pullulanase Ins domain J3U87_27710 PF11852 Domain of unknown function (DUF3372) J3U87_27710 PF03714 Bacterial pullanase-associated domain J3U87_27710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J3U87_27710 PF17967 Pullulanase N2 domain J3U87_27715 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J3U87_27715 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J3U87_27715 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain J3U87_27720 PF00293 NUDIX domain J3U87_27720 PF01467 Cytidylyltransferase-like J3U87_27745 PF04264 YceI-like domain J3U87_27770 PF08281 Sigma-70, region 4 J3U87_27770 PF04542 Sigma-70 region 2 J3U87_27775 PF00534 Glycosyl transferases group 1 J3U87_27790 PF04397 LytTr DNA-binding domain J3U87_27790 PF00072 Response regulator receiver domain J3U87_27855 PF03572 Peptidase family S41 J3U87_27855 PF13180 PDZ domain J3U87_27895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_27895 PF00512 His Kinase A (phospho-acceptor) domain J3U87_27910 PF00183 Hsp90 protein J3U87_27935 PF00194 Eukaryotic-type carbonic anhydrase J3U87_28030 PF00759 Glycosyl hydrolase family 9 J3U87_28030 PF00041 Fibronectin type III domain J3U87_28030 PF00553 Cellulose binding domain J3U87_28030 PF00942 Cellulose binding domain J3U87_28050 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J3U87_28095 PF01053 Cys/Met metabolism PLP-dependent enzyme J3U87_28100 PF01053 Cys/Met metabolism PLP-dependent enzyme J3U87_28115 PF00144 Beta-lactamase J3U87_28150 PF09308 LuxQ, periplasmic J3U87_28150 PF00512 His Kinase A (phospho-acceptor) domain J3U87_28150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_28150 PF00072 Response regulator receiver domain J3U87_28155 PF01739 CheR methyltransferase, SAM binding domain J3U87_28155 PF03705 CheR methyltransferase, all-alpha domain J3U87_28160 PF00360 Phytochrome region J3U87_28160 PF01590 GAF domain J3U87_28160 PF08446 PAS fold J3U87_28160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_28160 PF00512 His Kinase A (phospho-acceptor) domain J3U87_28170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_28170 PF00512 His Kinase A (phospho-acceptor) domain J3U87_28170 PF00989 PAS fold J3U87_28180 PF00731 AIR carboxylase J3U87_28185 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J3U87_28185 PF02222 ATP-grasp domain J3U87_28195 PF00465 Iron-containing alcohol dehydrogenase J3U87_28205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J3U87_28205 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J3U87_28210 PF03102 NeuB family J3U87_28210 PF08666 SAF domain J3U87_28220 PF03527 RHS protein J3U87_28220 PF05593 RHS Repeat J3U87_28240 PF01435 Peptidase family M48 J3U87_28245 PF00578 AhpC/TSA family J3U87_28250 PF01227 GTP cyclohydrolase I J3U87_28260 PF04389 Peptidase family M28 J3U87_28260 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_28290 PF00497 Bacterial extracellular solute-binding proteins, family 3 J3U87_28295 PF00005 ABC transporter J3U87_28300 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_28310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3U87_28330 PF00486 Transcriptional regulatory protein, C terminal J3U87_28330 PF18500 CadC C-terminal domain 1 J3U87_28340 PF00474 Sodium:solute symporter family J3U87_28360 PF04717 Type VI secretion system, phage-baseplate injector J3U87_28360 PF06715 Gp5 C-terminal repeat (3 copies) J3U87_28375 PF00072 Response regulator receiver domain J3U87_28375 PF02954 Bacterial regulatory protein, Fis family J3U87_28375 PF00158 Sigma-54 interaction domain J3U87_28380 PF00072 Response regulator receiver domain J3U87_28380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_28380 PF01627 Hpt domain J3U87_28380 PF00512 His Kinase A (phospho-acceptor) domain J3U87_28380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_28380 PF00672 HAMP domain J3U87_28385 PF03707 Bacterial signalling protein N terminal repeat J3U87_28385 PF00990 Diguanylate cyclase, GGDEF domain J3U87_28385 PF00563 EAL domain J3U87_28395 PF17149 Periplasmic sensor domain found in signal transduction proteins J3U87_28395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_28395 PF00512 His Kinase A (phospho-acceptor) domain J3U87_28395 PF01627 Hpt domain J3U87_28395 PF00072 Response regulator receiver domain J3U87_28395 PF00672 HAMP domain J3U87_28400 PF00230 Major intrinsic protein J3U87_28420 PF00082 Subtilase family J3U87_28430 PF00403 Heavy-metal-associated domain J3U87_28440 PF04397 LytTr DNA-binding domain J3U87_28440 PF00072 Response regulator receiver domain J3U87_28485 PF00072 Response regulator receiver domain J3U87_28485 PF04397 LytTr DNA-binding domain J3U87_28490 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_28490 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_28495 PF07977 FabA-like domain J3U87_28505 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_28505 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_28520 PF00550 Phosphopantetheine attachment site J3U87_28525 PF00550 Phosphopantetheine attachment site J3U87_28535 PF00156 Phosphoribosyl transferase domain J3U87_28545 PF01475 Ferric uptake regulator family J3U87_28550 PF00069 Protein kinase domain J3U87_28550 PF03793 PASTA domain J3U87_28565 PF00593 TonB dependent receptor J3U87_28565 PF00593 TonB dependent receptor J3U87_28580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_28580 PF00672 HAMP domain J3U87_28580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_28580 PF00512 His Kinase A (phospho-acceptor) domain J3U87_28580 PF01627 Hpt domain J3U87_28580 PF00072 Response regulator receiver domain J3U87_28590 PF00144 Beta-lactamase J3U87_28595 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J3U87_28595 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J3U87_28595 PF13244 Domain of unknown function (DUF4040) J3U87_28595 PF00361 Proton-conducting membrane transporter J3U87_28605 PF00361 Proton-conducting membrane transporter J3U87_28610 PF00361 Proton-conducting membrane transporter J3U87_28620 PF00361 Proton-conducting membrane transporter J3U87_28620 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J3U87_28620 PF13244 Domain of unknown function (DUF4040) J3U87_28630 PF03334 Na+/H+ antiporter subunit J3U87_28645 PF00270 DEAD/DEAH box helicase J3U87_28645 PF00271 Helicase conserved C-terminal domain J3U87_28645 PF03880 DbpA RNA binding domain J3U87_28665 PF13520 Amino acid permease J3U87_28675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J3U87_28675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J3U87_28685 PF00293 NUDIX domain J3U87_28695 PF00501 AMP-binding enzyme J3U87_28695 PF14535 AMP-binding enzyme C-terminal domain J3U87_28705 PF04820 Tryptophan halogenase J3U87_28720 PF00990 Diguanylate cyclase, GGDEF domain J3U87_28735 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J3U87_28735 PF00400 WD domain, G-beta repeat J3U87_28755 PF00501 AMP-binding enzyme J3U87_28755 PF13193 AMP-binding enzyme C-terminal domain J3U87_28755 PF00550 Phosphopantetheine attachment site J3U87_28755 PF00668 Condensation domain J3U87_28765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_28765 PF00512 His Kinase A (phospho-acceptor) domain J3U87_28765 PF16736 Single Cache-like J3U87_28765 PF00989 PAS fold J3U87_28785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_28785 PF00529 HlyD membrane-fusion protein of T1SS J3U87_28790 PF00873 AcrB/AcrD/AcrF family J3U87_28800 PF13411 MerR HTH family regulatory protein J3U87_28805 PF04945 YHS domain J3U87_28815 PF13186 Iron-sulfur cluster-binding domain J3U87_28815 PF04055 Radical SAM superfamily J3U87_28835 PF00664 ABC transporter transmembrane region J3U87_28835 PF00005 ABC transporter J3U87_28910 PF13538 UvrD-like helicase C-terminal domain J3U87_28910 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain J3U87_28910 PF14490 Helix-hairpin-helix containing domain J3U87_29020 PF00589 Phage integrase family J3U87_29025 PF00772 DnaB-like helicase N terminal domain J3U87_29025 PF14528 LAGLIDADG-like domain J3U87_29025 PF03796 DnaB-like helicase C terminal domain J3U87_29150 PF00534 Glycosyl transferases group 1 J3U87_29150 PF00535 Glycosyl transferase family 2 J3U87_29275 PF07694 5TMR of 5TMR-LYT J3U87_29275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_29275 PF06580 Histidine kinase J3U87_29275 PF13492 GAF domain J3U87_29280 PF00072 Response regulator receiver domain J3U87_29280 PF04397 LytTr DNA-binding domain J3U87_29285 PF01757 Acyltransferase family J3U87_29305 PF08443 RimK-like ATP-grasp domain J3U87_29305 PF02875 Mur ligase family, glutamate ligase domain J3U87_29305 PF08245 Mur ligase middle domain J3U87_29310 PF13537 Glutamine amidotransferase domain J3U87_29310 PF00733 Asparagine synthase J3U87_29320 PF00962 Adenosine/AMP deaminase J3U87_29325 PF00775 Dioxygenase J3U87_29325 PF04444 Catechol dioxygenase N terminus J3U87_29330 PF00067 Cytochrome P450 J3U87_29340 PF02954 Bacterial regulatory protein, Fis family J3U87_29340 PF00072 Response regulator receiver domain J3U87_29340 PF00158 Sigma-54 interaction domain J3U87_29345 PF07690 Major Facilitator Superfamily J3U87_29375 PF06580 Histidine kinase J3U87_29375 PF07694 5TMR of 5TMR-LYT J3U87_29375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_29380 PF00072 Response regulator receiver domain J3U87_29380 PF04397 LytTr DNA-binding domain J3U87_29385 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J3U87_29385 PF04616 Glycosyl hydrolases family 43 J3U87_29400 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J3U87_29400 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J3U87_29405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J3U87_29405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J3U87_29410 PF00083 Sugar (and other) transporter J3U87_29420 PF11606 Family 31 carbohydrate binding protein J3U87_29425 PF00593 TonB dependent receptor J3U87_29425 PF07715 TonB-dependent Receptor Plug Domain J3U87_29435 PF00356 Bacterial regulatory proteins, lacI family J3U87_29440 PF01425 Amidase J3U87_29445 PF07685 CobB/CobQ-like glutamine amidotransferase domain J3U87_29445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J3U87_29460 PF02607 B12 binding domain J3U87_29460 PF13411 MerR HTH family regulatory protein J3U87_29465 PF06969 HemN C-terminal domain J3U87_29465 PF04055 Radical SAM superfamily J3U87_29470 PF00005 ABC transporter J3U87_29470 PF13732 Domain of unknown function (DUF4162) J3U87_29485 PF01590 GAF domain J3U87_29485 PF00158 Sigma-54 interaction domain J3U87_29490 PF13649 Methyltransferase domain J3U87_29545 PF03050 Transposase IS66 family J3U87_29545 PF13817 IS66 C-terminal element J3U87_29545 PF13005 zinc-finger binding domain of transposase IS66 J3U87_29545 PF13007 Transposase C of IS166 homeodomain J3U87_29585 PF00881 Nitroreductase family J3U87_29595 PF03793 PASTA domain J3U87_29595 PF00069 Protein kinase domain J3U87_29650 PF03793 PASTA domain J3U87_29650 PF00069 Protein kinase domain J3U87_29660 PF00919 Uncharacterized protein family UPF0004 J3U87_29660 PF04055 Radical SAM superfamily J3U87_29660 PF01938 TRAM domain J3U87_29665 PF00512 His Kinase A (phospho-acceptor) domain J3U87_29665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_29665 PF00672 HAMP domain J3U87_29665 PF00989 PAS fold J3U87_29670 PF00163 Ribosomal protein S4/S9 N-terminal domain J3U87_29670 PF01479 S4 domain J3U87_29685 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J3U87_29685 PF01872 RibD C-terminal domain J3U87_29720 PF00072 Response regulator receiver domain J3U87_29720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_29720 PF00512 His Kinase A (phospho-acceptor) domain J3U87_29720 PF09308 LuxQ, periplasmic J3U87_29735 PF00664 ABC transporter transmembrane region J3U87_29735 PF00005 ABC transporter J3U87_29740 PF00005 ABC transporter J3U87_29740 PF00664 ABC transporter transmembrane region J3U87_29750 PF00593 TonB dependent receptor J3U87_29750 PF07715 TonB-dependent Receptor Plug Domain J3U87_29755 PF13732 Domain of unknown function (DUF4162) J3U87_29755 PF00005 ABC transporter J3U87_29785 PF00593 TonB dependent receptor J3U87_29785 PF07715 TonB-dependent Receptor Plug Domain J3U87_29795 PF00593 TonB dependent receptor J3U87_29795 PF07715 TonB-dependent Receptor Plug Domain J3U87_29805 PF01740 STAS domain J3U87_29805 PF00916 Sulfate permease family J3U87_29815 PF12833 Helix-turn-helix domain J3U87_29815 PF17853 GGDEF-like domain J3U87_29830 PF07715 TonB-dependent Receptor Plug Domain J3U87_29830 PF00593 TonB dependent receptor J3U87_29845 PF07683 Cobalamin synthesis protein cobW C-terminal domain J3U87_29845 PF02492 CobW/HypB/UreG, nucleotide-binding domain J3U87_29860 PF00069 Protein kinase domain J3U87_29860 PF03793 PASTA domain J3U87_29880 PF01979 Amidohydrolase family J3U87_29895 PF07715 TonB-dependent Receptor Plug Domain J3U87_29895 PF00593 TonB dependent receptor J3U87_29900 PF02469 Fasciclin domain J3U87_29905 PF01170 Putative RNA methylase family UPF0020 J3U87_29905 PF10672 S-adenosylmethionine-dependent methyltransferase J3U87_29905 PF02926 THUMP domain J3U87_29920 PF13614 AAA domain J3U87_29925 PF02785 Biotin carboxylase C-terminal domain J3U87_29925 PF00289 Biotin carboxylase, N-terminal domain J3U87_29925 PF00364 Biotin-requiring enzyme J3U87_29925 PF00682 HMGL-like J3U87_29925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_29925 PF02436 Conserved carboxylase domain J3U87_29930 PF03309 Type III pantothenate kinase J3U87_29955 PF02779 Transketolase, pyrimidine binding domain J3U87_29955 PF16870 2-oxoglutarate dehydrogenase C-terminal J3U87_29955 PF00676 Dehydrogenase E1 component J3U87_29955 PF16078 2-oxoglutarate dehydrogenase N-terminus J3U87_29975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_29975 PF00072 Response regulator receiver domain J3U87_29975 PF00512 His Kinase A (phospho-acceptor) domain J3U87_29975 PF09308 LuxQ, periplasmic J3U87_29980 PF00202 Aminotransferase class-III J3U87_30005 PF00268 Ribonucleotide reductase, small chain J3U87_30010 PF02867 Ribonucleotide reductase, barrel domain J3U87_30010 PF00317 Ribonucleotide reductase, all-alpha domain J3U87_30010 PF03477 ATP cone domain J3U87_30015 PF03061 Thioesterase superfamily J3U87_30020 PF07238 PilZ domain J3U87_30020 PF00069 Protein kinase domain J3U87_30025 PF00668 Condensation domain J3U87_30025 PF00975 Thioesterase domain J3U87_30025 PF00550 Phosphopantetheine attachment site J3U87_30025 PF13193 AMP-binding enzyme C-terminal domain J3U87_30025 PF00501 AMP-binding enzyme J3U87_30050 PF00512 His Kinase A (phospho-acceptor) domain J3U87_30050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_30055 PF07495 Y_Y_Y domain J3U87_30055 PF00072 Response regulator receiver domain J3U87_30055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_30055 PF00512 His Kinase A (phospho-acceptor) domain J3U87_30055 PF12833 Helix-turn-helix domain J3U87_30055 PF07494 Two component regulator propeller J3U87_30060 PF00593 TonB dependent receptor J3U87_30060 PF07715 TonB-dependent Receptor Plug Domain J3U87_30070 PF07715 TonB-dependent Receptor Plug Domain J3U87_30070 PF00593 TonB dependent receptor J3U87_30080 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J3U87_30090 PF00005 ABC transporter J3U87_30095 PF02687 FtsX-like permease family J3U87_30100 PF12704 MacB-like periplasmic core domain J3U87_30100 PF02687 FtsX-like permease family J3U87_30100 PF00005 ABC transporter J3U87_30105 PF00158 Sigma-54 interaction domain J3U87_30105 PF00072 Response regulator receiver domain J3U87_30105 PF02954 Bacterial regulatory protein, Fis family J3U87_30110 PF00512 His Kinase A (phospho-acceptor) domain J3U87_30110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_30170 PF00005 ABC transporter J3U87_30195 PF00072 Response regulator receiver domain J3U87_30195 PF00990 Diguanylate cyclase, GGDEF domain J3U87_30205 PF00550 Phosphopantetheine attachment site J3U87_30205 PF00501 AMP-binding enzyme J3U87_30205 PF13193 AMP-binding enzyme C-terminal domain J3U87_30205 PF00668 Condensation domain J3U87_30205 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_30205 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_30205 PF00202 Aminotransferase class-III J3U87_30205 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_30215 PF00550 Phosphopantetheine attachment site J3U87_30220 PF13607 Succinyl-CoA ligase like flavodoxin domain J3U87_30220 PF00583 Acetyltransferase (GNAT) family J3U87_30220 PF13380 CoA binding domain J3U87_30225 PF02785 Biotin carboxylase C-terminal domain J3U87_30225 PF00289 Biotin carboxylase, N-terminal domain J3U87_30225 PF00364 Biotin-requiring enzyme J3U87_30225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_30230 PF00378 Enoyl-CoA hydratase/isomerase J3U87_30235 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_30235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J3U87_30235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_30240 PF01039 Carboxyl transferase domain J3U87_30250 PF00440 Bacterial regulatory proteins, tetR family J3U87_30250 PF17932 Tetracyclin repressor-like, C-terminal domain J3U87_30275 PF00571 CBS domain J3U87_30275 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_30290 PF00069 Protein kinase domain J3U87_30290 PF03793 PASTA domain J3U87_30305 PF02661 Fic/DOC family J3U87_30305 PF13784 Fic/DOC family N-terminal J3U87_30335 PF00486 Transcriptional regulatory protein, C terminal J3U87_30335 PF00072 Response regulator receiver domain J3U87_30365 PF01197 Ribosomal protein L31 J3U87_30375 PF01255 Putative undecaprenyl diphosphate synthase J3U87_30380 PF07726 ATPase family associated with various cellular activities (AAA) J3U87_30380 PF17863 AAA lid domain J3U87_30385 PF17770 Ribonuclease J C-terminal domain J3U87_30385 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J3U87_30385 PF12706 Beta-lactamase superfamily domain J3U87_30390 PF00398 Ribosomal RNA adenine dimethylase J3U87_30395 PF08442 ATP-grasp domain J3U87_30395 PF00549 CoA-ligase J3U87_30400 PF02629 CoA binding domain J3U87_30400 PF00549 CoA-ligase J3U87_30405 PF00334 Nucleoside diphosphate kinase J3U87_30410 PF05649 Peptidase family M13 J3U87_30410 PF01431 Peptidase family M13 J3U87_30415 PF00588 SpoU rRNA Methylase family J3U87_30440 PF00801 PKD domain J3U87_30440 PF05547 Immune inhibitor A peptidase M6 J3U87_30450 PF00873 AcrB/AcrD/AcrF family J3U87_30455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_30455 PF00529 HlyD membrane-fusion protein of T1SS J3U87_30470 PF00675 Insulinase (Peptidase family M16) J3U87_30470 PF05193 Peptidase M16 inactive domain J3U87_30475 PF00158 Sigma-54 interaction domain J3U87_30475 PF00072 Response regulator receiver domain J3U87_30475 PF02954 Bacterial regulatory protein, Fis family J3U87_30495 PF00300 Histidine phosphatase superfamily (branch 1) J3U87_30500 PF02222 ATP-grasp domain J3U87_30525 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J3U87_30525 PF13244 Domain of unknown function (DUF4040) J3U87_30525 PF00361 Proton-conducting membrane transporter J3U87_30525 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J3U87_30530 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J3U87_30535 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J3U87_30540 PF00361 Proton-conducting membrane transporter J3U87_30545 PF01899 Na+/H+ ion antiporter subunit J3U87_30550 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J3U87_30555 PF03334 Na+/H+ antiporter subunit J3U87_30560 PF03600 Citrate transporter J3U87_30560 PF02080 TrkA-C domain J3U87_30595 PF00486 Transcriptional regulatory protein, C terminal J3U87_30595 PF00072 Response regulator receiver domain J3U87_30600 PF00364 Biotin-requiring enzyme J3U87_30605 PF00289 Biotin carboxylase, N-terminal domain J3U87_30605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3U87_30605 PF02785 Biotin carboxylase C-terminal domain J3U87_30610 PF01039 Carboxyl transferase domain J3U87_30655 PF12833 Helix-turn-helix domain J3U87_30655 PF00512 His Kinase A (phospho-acceptor) domain J3U87_30655 PF12833 Helix-turn-helix domain J3U87_30655 PF00512 His Kinase A (phospho-acceptor) domain J3U87_30655 PF07495 Y_Y_Y domain J3U87_30655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_30655 PF07495 Y_Y_Y domain J3U87_30655 PF00072 Response regulator receiver domain J3U87_30655 PF07494 Two component regulator propeller J3U87_30655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_30655 PF00072 Response regulator receiver domain J3U87_30655 PF07494 Two component regulator propeller J3U87_30660 PF00266 Aminotransferase class-V J3U87_30665 PF02511 Thymidylate synthase complementing protein J3U87_30675 PF02515 CoA-transferase family III J3U87_30680 PF07670 Nucleoside recognition J3U87_30680 PF01773 Na+ dependent nucleoside transporter N-terminus J3U87_30680 PF07662 Na+ dependent nucleoside transporter C-terminus J3U87_30685 PF01048 Phosphorylase superfamily J3U87_30695 PF00593 TonB dependent receptor J3U87_30695 PF07715 TonB-dependent Receptor Plug Domain J3U87_30700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_30700 PF00989 PAS fold J3U87_30700 PF17203 Single cache domain 3 J3U87_30700 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J3U87_30710 PF03793 PASTA domain J3U87_30710 PF00069 Protein kinase domain J3U87_30725 PF00578 AhpC/TSA family J3U87_30730 PF00072 Response regulator receiver domain J3U87_30730 PF18415 Histidine kinase receptor ArcB trans-membrane domain J3U87_30730 PF00989 PAS fold J3U87_30730 PF01627 Hpt domain J3U87_30730 PF00512 His Kinase A (phospho-acceptor) domain J3U87_30730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_30745 PF13419 Haloacid dehalogenase-like hydrolase J3U87_30750 PF00082 Subtilase family J3U87_30765 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J3U87_30765 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J3U87_30770 PF00210 Ferritin-like domain J3U87_30775 PF00069 Protein kinase domain J3U87_30775 PF03793 PASTA domain J3U87_30785 PF00795 Carbon-nitrogen hydrolase J3U87_30805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_30805 PF00512 His Kinase A (phospho-acceptor) domain J3U87_30805 PF00672 HAMP domain J3U87_30810 PF00072 Response regulator receiver domain J3U87_30810 PF00486 Transcriptional regulatory protein, C terminal J3U87_30820 PF06803 Protein of unknown function (DUF1232) J3U87_30825 PF02743 Cache domain J3U87_30825 PF00672 HAMP domain J3U87_30825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J3U87_30835 PF00067 Cytochrome P450 J3U87_30840 PF00889 Elongation factor TS J3U87_30845 PF00318 Ribosomal protein S2 J3U87_30850 PF00380 Ribosomal protein S9/S16 J3U87_30855 PF00572 Ribosomal protein L13 J3U87_30860 PF12679 ABC-2 family transporter protein J3U87_30865 PF00005 ABC transporter J3U87_30870 PF01522 Polysaccharide deacetylase J3U87_30890 PF14497 Glutathione S-transferase, C-terminal domain J3U87_30890 PF02798 Glutathione S-transferase, N-terminal domain J3U87_30900 PF03781 Sulfatase-modifying factor enzyme 1 J3U87_30905 PF01966 HD domain J3U87_30920 PF00501 AMP-binding enzyme J3U87_30920 PF00550 Phosphopantetheine attachment site J3U87_30920 PF07993 Male sterility protein J3U87_30920 PF13193 AMP-binding enzyme C-terminal domain J3U87_30920 PF00668 Condensation domain J3U87_30945 PF00005 ABC transporter J3U87_30950 PF00392 Bacterial regulatory proteins, gntR family J3U87_30975 PF00561 alpha/beta hydrolase fold J3U87_30980 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J3U87_30980 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J3U87_31000 PF13193 AMP-binding enzyme C-terminal domain J3U87_31000 PF00501 AMP-binding enzyme J3U87_31015 PF00561 alpha/beta hydrolase fold J3U87_31025 PF00668 Condensation domain J3U87_31025 PF13193 AMP-binding enzyme C-terminal domain J3U87_31025 PF07993 Male sterility protein J3U87_31025 PF00550 Phosphopantetheine attachment site J3U87_31025 PF00501 AMP-binding enzyme J3U87_31030 PF13193 AMP-binding enzyme C-terminal domain J3U87_31030 PF00975 Thioesterase domain J3U87_31030 PF00550 Phosphopantetheine attachment site J3U87_31030 PF00668 Condensation domain J3U87_31030 PF00501 AMP-binding enzyme J3U87_31035 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_31035 PF00668 Condensation domain J3U87_31035 PF00698 Acyl transferase domain J3U87_31035 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_31035 PF00550 Phosphopantetheine attachment site J3U87_31035 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_31040 PF00501 AMP-binding enzyme J3U87_31040 PF13193 AMP-binding enzyme C-terminal domain J3U87_31040 PF00550 Phosphopantetheine attachment site J3U87_31040 PF00668 Condensation domain J3U87_31045 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_31045 PF00698 Acyl transferase domain J3U87_31045 PF00668 Condensation domain J3U87_31045 PF00550 Phosphopantetheine attachment site J3U87_31045 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_31045 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_31050 PF00550 Phosphopantetheine attachment site J3U87_31050 PF00668 Condensation domain J3U87_31050 PF00501 AMP-binding enzyme J3U87_31050 PF13193 AMP-binding enzyme C-terminal domain J3U87_31060 PF00698 Acyl transferase domain J3U87_31060 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_31060 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_31060 PF14765 Polyketide synthase dehydratase J3U87_31060 PF00550 Phosphopantetheine attachment site J3U87_31060 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_31060 PF08659 KR domain J3U87_31060 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_31065 PF00082 Subtilase family J3U87_31085 PF01915 Glycosyl hydrolase family 3 C-terminal domain J3U87_31085 PF00933 Glycosyl hydrolase family 3 N terminal domain J3U87_31085 PF14310 Fibronectin type III-like domain J3U87_31090 PF00005 ABC transporter J3U87_31090 PF17912 MalK OB fold domain J3U87_31095 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_31100 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_31105 PF01547 Bacterial extracellular solute-binding protein J3U87_31115 PF03793 PASTA domain J3U87_31115 PF00069 Protein kinase domain J3U87_31135 PF13193 AMP-binding enzyme C-terminal domain J3U87_31135 PF00501 AMP-binding enzyme J3U87_31135 PF00668 Condensation domain J3U87_31135 PF00550 Phosphopantetheine attachment site J3U87_31180 PF01979 Amidohydrolase family J3U87_31185 PF01979 Amidohydrolase family J3U87_31225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J3U87_31225 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J3U87_31230 PF00756 Putative esterase J3U87_31230 PF11806 Domain of unknown function (DUF3327) J3U87_31245 PF04055 Radical SAM superfamily J3U87_31245 PF02310 B12 binding domain J3U87_31270 PF12697 Alpha/beta hydrolase family J3U87_31290 PF00009 Elongation factor Tu GTP binding domain J3U87_31295 PF01507 Phosphoadenosine phosphosulfate reductase family J3U87_31320 PF00069 Protein kinase domain J3U87_31320 PF03793 PASTA domain J3U87_31350 PF00400 WD domain, G-beta repeat J3U87_31350 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J3U87_31360 PF00072 Response regulator receiver domain J3U87_31360 PF02954 Bacterial regulatory protein, Fis family J3U87_31360 PF00158 Sigma-54 interaction domain J3U87_31370 PF04055 Radical SAM superfamily J3U87_31385 PF00672 HAMP domain J3U87_31385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_31385 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB J3U87_31385 PF00512 His Kinase A (phospho-acceptor) domain J3U87_31385 PF08448 PAS fold J3U87_31390 PF00072 Response regulator receiver domain J3U87_31390 PF00486 Transcriptional regulatory protein, C terminal J3U87_31400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_31400 PF03466 LysR substrate binding domain J3U87_31425 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J3U87_31470 PF02805 Metal binding domain of Ada J3U87_31470 PF12833 Helix-turn-helix domain J3U87_31470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J3U87_31470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J3U87_31475 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA J3U87_31480 PF00465 Iron-containing alcohol dehydrogenase J3U87_31495 PF02666 Phosphatidylserine decarboxylase J3U87_31500 PF04463 Protein of unknown function (DUF523) J3U87_31505 PF00106 short chain dehydrogenase J3U87_31515 PF00069 Protein kinase domain J3U87_31515 PF03793 PASTA domain J3U87_31530 PF00501 AMP-binding enzyme J3U87_31530 PF13193 AMP-binding enzyme C-terminal domain J3U87_31530 PF00550 Phosphopantetheine attachment site J3U87_31530 PF00668 Condensation domain J3U87_31530 PF13193 AMP-binding enzyme C-terminal domain J3U87_31530 PF00501 AMP-binding enzyme J3U87_31530 PF00550 Phosphopantetheine attachment site J3U87_31530 PF00668 Condensation domain J3U87_31535 PF00501 AMP-binding enzyme J3U87_31535 PF00550 Phosphopantetheine attachment site J3U87_31535 PF00668 Condensation domain J3U87_31535 PF13193 AMP-binding enzyme C-terminal domain J3U87_31535 PF00501 AMP-binding enzyme J3U87_31535 PF00550 Phosphopantetheine attachment site J3U87_31535 PF00668 Condensation domain J3U87_31535 PF13193 AMP-binding enzyme C-terminal domain J3U87_31540 PF00668 Condensation domain J3U87_31540 PF00501 AMP-binding enzyme J3U87_31540 PF00975 Thioesterase domain J3U87_31540 PF00550 Phosphopantetheine attachment site J3U87_31540 PF13193 AMP-binding enzyme C-terminal domain J3U87_31545 PF00155 Aminotransferase class I and II J3U87_31550 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J3U87_31555 PF00005 ABC transporter J3U87_31560 PF08713 DNA alkylation repair enzyme J3U87_31590 PF07715 TonB-dependent Receptor Plug Domain J3U87_31590 PF00593 TonB dependent receptor J3U87_31605 PF01965 DJ-1/PfpI family J3U87_31605 PF12833 Helix-turn-helix domain J3U87_31615 PF00034 Cytochrome c J3U87_31620 PF00115 Cytochrome C and Quinol oxidase polypeptide I J3U87_31625 PF07728 AAA domain (dynein-related subfamily) J3U87_31625 PF08406 CbbQ/NirQ/NorQ C-terminal J3U87_31630 PF00092 von Willebrand factor type A domain J3U87_31660 PF01638 HxlR-like helix-turn-helix J3U87_31665 PF00384 Molybdopterin oxidoreductase J3U87_31665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J3U87_31665 PF01568 Molydopterin dinucleotide binding domain J3U87_31715 PF00482 Type II secretion system (T2SS), protein F J3U87_31720 PF07963 Prokaryotic N-terminal methylation motif J3U87_31720 PF14245 Type IV pilin PilA J3U87_31725 PF00437 Type II/IV secretion system protein J3U87_31730 PF00263 Bacterial type II and III secretion system protein J3U87_31730 PF03958 Bacterial type II/III secretion system short domain J3U87_31775 PF18496 Collagenase G catalytic helper subdomain J3U87_31775 PF01752 Collagenase J3U87_31775 PF08453 Peptidase family M9 N-terminal J3U87_31805 PF00593 TonB dependent receptor J3U87_31805 PF07715 TonB-dependent Receptor Plug Domain J3U87_31840 PF00005 ABC transporter J3U87_31845 PF06580 Histidine kinase J3U87_31845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_31845 PF07694 5TMR of 5TMR-LYT J3U87_31850 PF04397 LytTr DNA-binding domain J3U87_31850 PF00072 Response regulator receiver domain J3U87_31870 PF01266 FAD dependent oxidoreductase J3U87_31880 PF12894 Anaphase-promoting complex subunit 4 WD40 domain J3U87_31880 PF00400 WD domain, G-beta repeat J3U87_31905 PF01022 Bacterial regulatory protein, arsR family J3U87_31930 PF04055 Radical SAM superfamily J3U87_31930 PF06969 HemN C-terminal domain J3U87_31980 PF00069 Protein kinase domain J3U87_31980 PF03793 PASTA domain J3U87_31985 PF00512 His Kinase A (phospho-acceptor) domain J3U87_31985 PF09308 LuxQ, periplasmic J3U87_31985 PF00072 Response regulator receiver domain J3U87_31985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_31990 PF00158 Sigma-54 interaction domain J3U87_31990 PF02954 Bacterial regulatory protein, Fis family J3U87_31990 PF00072 Response regulator receiver domain J3U87_31995 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family J3U87_32000 PF01546 Peptidase family M20/M25/M40 J3U87_32005 PF13193 AMP-binding enzyme C-terminal domain J3U87_32005 PF00501 AMP-binding enzyme J3U87_32005 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32005 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32005 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32005 PF00668 Condensation domain J3U87_32005 PF00550 Phosphopantetheine attachment site J3U87_32005 PF14765 Polyketide synthase dehydratase J3U87_32005 PF08659 KR domain J3U87_32010 PF00501 AMP-binding enzyme J3U87_32010 PF13193 AMP-binding enzyme C-terminal domain J3U87_32010 PF00550 Phosphopantetheine attachment site J3U87_32010 PF14765 Polyketide synthase dehydratase J3U87_32010 PF08659 KR domain J3U87_32010 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32010 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32010 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32010 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32010 PF00668 Condensation domain J3U87_32010 PF13193 AMP-binding enzyme C-terminal domain J3U87_32010 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32010 PF14765 Polyketide synthase dehydratase J3U87_32010 PF00550 Phosphopantetheine attachment site J3U87_32010 PF08659 KR domain J3U87_32010 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32010 PF00501 AMP-binding enzyme J3U87_32010 PF00668 Condensation domain J3U87_32015 PF00501 AMP-binding enzyme J3U87_32015 PF13193 AMP-binding enzyme C-terminal domain J3U87_32015 PF00668 Condensation domain J3U87_32015 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32015 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32015 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32015 PF08659 KR domain J3U87_32015 PF00550 Phosphopantetheine attachment site J3U87_32015 PF14765 Polyketide synthase dehydratase J3U87_32020 PF14765 Polyketide synthase dehydratase J3U87_32020 PF00550 Phosphopantetheine attachment site J3U87_32020 PF08659 KR domain J3U87_32020 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32020 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32020 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32020 PF00668 Condensation domain J3U87_32020 PF13193 AMP-binding enzyme C-terminal domain J3U87_32020 PF00501 AMP-binding enzyme J3U87_32030 PF14765 Polyketide synthase dehydratase J3U87_32030 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32030 PF08659 KR domain J3U87_32030 PF00550 Phosphopantetheine attachment site J3U87_32030 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32030 PF00550 Phosphopantetheine attachment site J3U87_32030 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32030 PF08659 KR domain J3U87_32030 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32030 PF14765 Polyketide synthase dehydratase J3U87_32030 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32030 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32035 PF08242 Methyltransferase domain J3U87_32035 PF08659 KR domain J3U87_32035 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32035 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32035 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32035 PF00550 Phosphopantetheine attachment site J3U87_32035 PF14765 Polyketide synthase dehydratase J3U87_32040 PF00067 Cytochrome P450 J3U87_32045 PF00082 Subtilase family J3U87_32045 PF05922 Peptidase inhibitor I9 J3U87_32050 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_32050 PF00082 Subtilase family J3U87_32050 PF05922 Peptidase inhibitor I9 J3U87_32055 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family J3U87_32065 PF00072 Response regulator receiver domain J3U87_32070 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_32070 PF00672 HAMP domain J3U87_32070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_32070 PF00072 Response regulator receiver domain J3U87_32070 PF00512 His Kinase A (phospho-acceptor) domain J3U87_32070 PF01627 Hpt domain J3U87_32075 PF00593 TonB dependent receptor J3U87_32075 PF07715 TonB-dependent Receptor Plug Domain J3U87_32085 PF00990 Diguanylate cyclase, GGDEF domain J3U87_32085 PF00360 Phytochrome region J3U87_32085 PF01590 GAF domain J3U87_32085 PF00563 EAL domain J3U87_32090 PF01209 ubiE/COQ5 methyltransferase family J3U87_32130 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) J3U87_32160 PF05114 Protein of unknown function (DUF692) J3U87_32170 PF08032 RNA 2'-O ribose methyltransferase substrate binding J3U87_32170 PF00588 SpoU rRNA Methylase family J3U87_32185 PF02789 Cytosol aminopeptidase family, N-terminal domain J3U87_32185 PF00883 Cytosol aminopeptidase family, catalytic domain J3U87_32190 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J3U87_32190 PF00056 lactate/malate dehydrogenase, NAD binding domain J3U87_32195 PF01451 Low molecular weight phosphotyrosine protein phosphatase J3U87_32210 PF00593 TonB dependent receptor J3U87_32210 PF07715 TonB-dependent Receptor Plug Domain J3U87_32215 PF01343 Peptidase family S49 J3U87_32245 PF03466 LysR substrate binding domain J3U87_32245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_32250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J3U87_32255 PF00041 Fibronectin type III domain J3U87_32255 PF00704 Glycosyl hydrolases family 18 J3U87_32270 PF00857 Isochorismatase family J3U87_32295 PF00593 TonB dependent receptor J3U87_32295 PF07715 TonB-dependent Receptor Plug Domain J3U87_32315 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_32315 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_32315 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_32315 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_32315 PF03413 Peptidase propeptide and YPEB domain J3U87_32335 PF03099 Biotin/lipoate A/B protein ligase family J3U87_32335 PF02237 Biotin protein ligase C terminal domain J3U87_32340 PF00668 Condensation domain J3U87_32340 PF00550 Phosphopantetheine attachment site J3U87_32340 PF13193 AMP-binding enzyme C-terminal domain J3U87_32340 PF00501 AMP-binding enzyme J3U87_32340 PF00975 Thioesterase domain J3U87_32360 PF00561 alpha/beta hydrolase fold J3U87_32365 PF00005 ABC transporter J3U87_32370 PF00072 Response regulator receiver domain J3U87_32370 PF00486 Transcriptional regulatory protein, C terminal J3U87_32375 PF04389 Peptidase family M28 J3U87_32375 PF02225 PA domain J3U87_32380 PF08453 Peptidase family M9 N-terminal J3U87_32380 PF01752 Collagenase J3U87_32380 PF18496 Collagenase G catalytic helper subdomain J3U87_32390 PF01483 Proprotein convertase P-domain J3U87_32390 PF04389 Peptidase family M28 J3U87_32395 PF01546 Peptidase family M20/M25/M40 J3U87_32395 PF07687 Peptidase dimerisation domain J3U87_32405 PF00072 Response regulator receiver domain J3U87_32405 PF17149 Periplasmic sensor domain found in signal transduction proteins J3U87_32405 PF00672 HAMP domain J3U87_32405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_32405 PF00512 His Kinase A (phospho-acceptor) domain J3U87_32405 PF01627 Hpt domain J3U87_32430 PF00764 Arginosuccinate synthase J3U87_32435 PF01316 Arginine repressor, DNA binding domain J3U87_32435 PF02863 Arginine repressor, C-terminal domain J3U87_32445 PF00378 Enoyl-CoA hydratase/isomerase J3U87_32465 PF00108 Thiolase, N-terminal domain J3U87_32465 PF02803 Thiolase, C-terminal domain J3U87_32470 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J3U87_32470 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J3U87_32470 PF00378 Enoyl-CoA hydratase/isomerase J3U87_32475 PF00501 AMP-binding enzyme J3U87_32480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J3U87_32480 PF02770 Acyl-CoA dehydrogenase, middle domain J3U87_32480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J3U87_32485 PF00672 HAMP domain J3U87_32485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_32485 PF18698 Histidine kinase sensor domain J3U87_32485 PF00512 His Kinase A (phospho-acceptor) domain J3U87_32535 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J3U87_32535 PF11892 Domain of unknown function (DUF3412) J3U87_32535 PF03641 Possible lysine decarboxylase J3U87_32540 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J3U87_32560 PF00069 Protein kinase domain J3U87_32560 PF13570 PQQ-like domain J3U87_32560 PF13360 PQQ-like domain J3U87_32560 PF01011 PQQ enzyme repeat J3U87_32580 PF04055 Radical SAM superfamily J3U87_32580 PF02310 B12 binding domain J3U87_32595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_32620 PF00593 TonB dependent receptor J3U87_32620 PF07715 TonB-dependent Receptor Plug Domain J3U87_32625 PF00501 AMP-binding enzyme J3U87_32625 PF13193 AMP-binding enzyme C-terminal domain J3U87_32625 PF00668 Condensation domain J3U87_32625 PF00550 Phosphopantetheine attachment site J3U87_32630 PF00550 Phosphopantetheine attachment site J3U87_32630 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32630 PF00698 Acyl transferase domain J3U87_32630 PF00668 Condensation domain J3U87_32630 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32630 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32635 PF00550 Phosphopantetheine attachment site J3U87_32635 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_32635 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_32635 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_32635 PF00668 Condensation domain J3U87_32635 PF00698 Acyl transferase domain J3U87_32640 PF13193 AMP-binding enzyme C-terminal domain J3U87_32640 PF00501 AMP-binding enzyme J3U87_32640 PF00668 Condensation domain J3U87_32640 PF07993 Male sterility protein J3U87_32640 PF00550 Phosphopantetheine attachment site J3U87_32645 PF13193 AMP-binding enzyme C-terminal domain J3U87_32645 PF00501 AMP-binding enzyme J3U87_32645 PF00668 Condensation domain J3U87_32645 PF00550 Phosphopantetheine attachment site J3U87_32650 PF00501 AMP-binding enzyme J3U87_32650 PF00550 Phosphopantetheine attachment site J3U87_32650 PF00668 Condensation domain J3U87_32650 PF13193 AMP-binding enzyme C-terminal domain J3U87_32655 PF00501 AMP-binding enzyme J3U87_32655 PF13193 AMP-binding enzyme C-terminal domain J3U87_32655 PF00550 Phosphopantetheine attachment site J3U87_32655 PF00668 Condensation domain J3U87_32670 PF00072 Response regulator receiver domain J3U87_32670 PF00196 Bacterial regulatory proteins, luxR family J3U87_32675 PF01595 Cyclin M transmembrane N-terminal domain J3U87_32675 PF00571 CBS domain J3U87_32680 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J3U87_32680 PF00989 PAS fold J3U87_32680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_32680 PF17203 Single cache domain 3 J3U87_32685 PF03793 PASTA domain J3U87_32685 PF00069 Protein kinase domain J3U87_32695 PF07495 Y_Y_Y domain J3U87_32695 PF00512 His Kinase A (phospho-acceptor) domain J3U87_32695 PF12833 Helix-turn-helix domain J3U87_32695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_32695 PF00072 Response regulator receiver domain J3U87_32695 PF07494 Two component regulator propeller J3U87_32700 PF01694 Rhomboid family J3U87_32705 PF01266 FAD dependent oxidoreductase J3U87_32730 PF01966 HD domain J3U87_32730 PF11871 Domain of unknown function (DUF3391) J3U87_32735 PF00672 HAMP domain J3U87_32735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_32735 PF00512 His Kinase A (phospho-acceptor) domain J3U87_32735 PF01627 Hpt domain J3U87_32735 PF00072 Response regulator receiver domain J3U87_32735 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_32740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J3U87_32740 PF10414 Sirohaem synthase dimerisation region J3U87_32745 PF04055 Radical SAM superfamily J3U87_32745 PF13186 Iron-sulfur cluster-binding domain J3U87_32750 PF17805 AsnC-like ligand binding domain J3U87_32755 PF17805 AsnC-like ligand binding domain J3U87_32755 PF13404 AsnC-type helix-turn-helix domain J3U87_32760 PF17805 AsnC-like ligand binding domain J3U87_32765 PF17805 AsnC-like ligand binding domain J3U87_32765 PF13404 AsnC-type helix-turn-helix domain J3U87_32775 PF10414 Sirohaem synthase dimerisation region J3U87_32775 PF14824 Sirohaem biosynthesis protein central J3U87_32775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J3U87_32785 PF00246 Zinc carboxypeptidase J3U87_32785 PF18027 Cytosolic carboxypeptidase N-terminal domain J3U87_32790 PF00128 Alpha amylase, catalytic domain J3U87_32790 PF00686 Starch binding domain J3U87_32790 PF09081 Domain of unknown function (DUF1921) J3U87_32810 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_32810 PF00672 HAMP domain J3U87_32815 PF02780 Transketolase, C-terminal domain J3U87_32815 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J3U87_32815 PF02779 Transketolase, pyrimidine binding domain J3U87_32825 PF00106 short chain dehydrogenase J3U87_32830 PF00149 Calcineurin-like phosphoesterase J3U87_32835 PF08544 GHMP kinases C terminal J3U87_32835 PF00288 GHMP kinases N terminal domain J3U87_32840 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_32885 PF01894 Uncharacterised protein family UPF0047 J3U87_32890 PF03796 DnaB-like helicase C terminal domain J3U87_32890 PF00772 DnaB-like helicase N terminal domain J3U87_32895 PF00501 AMP-binding enzyme J3U87_32900 PF00561 alpha/beta hydrolase fold J3U87_32905 PF00108 Thiolase, N-terminal domain J3U87_32905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J3U87_32915 PF00248 Aldo/keto reductase family J3U87_32920 PF02272 DHHA1 domain J3U87_32920 PF01411 tRNA synthetases class II (A) J3U87_32920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J3U87_32930 PF03572 Peptidase family S41 J3U87_32930 PF14685 Tricorn protease PDZ domain J3U87_32930 PF14684 Tricorn protease C1 domain J3U87_32930 PF07676 WD40-like Beta Propeller Repeat J3U87_32940 PF01209 ubiE/COQ5 methyltransferase family J3U87_32990 PF01381 Helix-turn-helix J3U87_33000 PF03109 ABC1 family J3U87_33005 PF00005 ABC transporter J3U87_33005 PF00664 ABC transporter transmembrane region J3U87_33010 PF00072 Response regulator receiver domain J3U87_33010 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_33010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_33010 PF00512 His Kinase A (phospho-acceptor) domain J3U87_33010 PF00672 HAMP domain J3U87_33010 PF01627 Hpt domain J3U87_33025 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) J3U87_33035 PF00144 Beta-lactamase J3U87_33040 PF01734 Patatin-like phospholipase J3U87_33065 PF00069 Protein kinase domain J3U87_33065 PF03793 PASTA domain J3U87_33080 PF03793 PASTA domain J3U87_33080 PF00069 Protein kinase domain J3U87_33100 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J3U87_33100 PF18764 Nitrous oxide reductase propeller repeat J3U87_33100 PF18793 Nitrous oxide reductase propeller repeat 2 J3U87_33105 PF12801 4Fe-4S binding domain J3U87_33105 PF04205 FMN-binding domain J3U87_33115 PF00005 ABC transporter J3U87_33120 PF12679 ABC-2 family transporter protein J3U87_33130 PF01022 Bacterial regulatory protein, arsR family J3U87_33150 PF14497 Glutathione S-transferase, C-terminal domain J3U87_33150 PF02798 Glutathione S-transferase, N-terminal domain J3U87_33160 PF01734 Patatin-like phospholipase J3U87_33160 PF00027 Cyclic nucleotide-binding domain J3U87_33165 PF00970 Oxidoreductase FAD-binding domain J3U87_33165 PF00111 2Fe-2S iron-sulfur cluster binding domain J3U87_33165 PF00175 Oxidoreductase NAD-binding domain J3U87_33170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) J3U87_33170 PF00355 Rieske [2Fe-2S] domain J3U87_33200 PF00067 Cytochrome P450 J3U87_33225 PF00440 Bacterial regulatory proteins, tetR family J3U87_33245 PF10604 Polyketide cyclase / dehydrase and lipid transport J3U87_33255 PF09308 LuxQ, periplasmic J3U87_33255 PF00072 Response regulator receiver domain J3U87_33255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_33255 PF00512 His Kinase A (phospho-acceptor) domain J3U87_33265 PF13411 MerR HTH family regulatory protein J3U87_33270 PF00005 ABC transporter J3U87_33280 PF04542 Sigma-70 region 2 J3U87_33280 PF08281 Sigma-70, region 4 J3U87_33365 PF03358 NADPH-dependent FMN reductase J3U87_33370 PF03352 Methyladenine glycosylase J3U87_33380 PF00440 Bacterial regulatory proteins, tetR family J3U87_33380 PF08360 QacR-like protein, C-terminal region J3U87_33390 PF08402 TOBE domain J3U87_33390 PF00005 ABC transporter J3U87_33395 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_33400 PF00528 Binding-protein-dependent transport system inner membrane component J3U87_33405 PF13416 Bacterial extracellular solute-binding protein J3U87_33415 PF02687 FtsX-like permease family J3U87_33415 PF12704 MacB-like periplasmic core domain J3U87_33425 PF12704 MacB-like periplasmic core domain J3U87_33425 PF00005 ABC transporter J3U87_33425 PF02687 FtsX-like permease family J3U87_33435 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_33435 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_33435 PF08659 KR domain J3U87_33435 PF00550 Phosphopantetheine attachment site J3U87_33435 PF00668 Condensation domain J3U87_33435 PF13193 AMP-binding enzyme C-terminal domain J3U87_33435 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_33435 PF14765 Polyketide synthase dehydratase J3U87_33435 PF00501 AMP-binding enzyme J3U87_33440 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_33440 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_33440 PF08242 Methyltransferase domain J3U87_33440 PF00550 Phosphopantetheine attachment site J3U87_33440 PF14765 Polyketide synthase dehydratase J3U87_33440 PF00975 Thioesterase domain J3U87_33440 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_33450 PF00550 Phosphopantetheine attachment site J3U87_33450 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_33450 PF00202 Aminotransferase class-III J3U87_33450 PF00501 AMP-binding enzyme J3U87_33450 PF13193 AMP-binding enzyme C-terminal domain J3U87_33450 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_33450 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_33450 PF00668 Condensation domain J3U87_33455 PF14765 Polyketide synthase dehydratase J3U87_33455 PF00550 Phosphopantetheine attachment site J3U87_33455 PF08242 Methyltransferase domain J3U87_33455 PF08659 KR domain J3U87_33455 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_33455 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_33455 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_33460 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_33460 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_33460 PF08659 KR domain J3U87_33460 PF00550 Phosphopantetheine attachment site J3U87_33460 PF14765 Polyketide synthase dehydratase J3U87_33460 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_33465 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_33465 PF08659 KR domain J3U87_33465 PF08242 Methyltransferase domain J3U87_33465 PF00550 Phosphopantetheine attachment site J3U87_33465 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_33465 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_33465 PF14765 Polyketide synthase dehydratase J3U87_33470 PF03060 Nitronate monooxygenase J3U87_33470 PF00698 Acyl transferase domain J3U87_33475 PF00069 Protein kinase domain J3U87_33475 PF03793 PASTA domain J3U87_33480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J3U87_33480 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3U87_33485 PF02817 e3 binding domain J3U87_33485 PF00364 Biotin-requiring enzyme J3U87_33485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J3U87_33490 PF00456 Transketolase, thiamine diphosphate binding domain J3U87_33490 PF17831 Pyruvate dehydrogenase E1 component middle domain J3U87_33510 PF00691 OmpA family J3U87_33560 PF08281 Sigma-70, region 4 J3U87_33560 PF04542 Sigma-70 region 2 J3U87_33610 PF00464 Serine hydroxymethyltransferase J3U87_33620 PF04073 Aminoacyl-tRNA editing domain J3U87_33625 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_33625 PF04389 Peptidase family M28 J3U87_33630 PF12627 Probable RNA and SrmB- binding site of polymerase A J3U87_33630 PF01743 Poly A polymerase head domain J3U87_33630 PF12626 Polymerase A arginine-rich C-terminus J3U87_33635 PF00474 Sodium:solute symporter family J3U87_33645 PF02926 THUMP domain J3U87_33645 PF10672 S-adenosylmethionine-dependent methyltransferase J3U87_33645 PF01170 Putative RNA methylase family UPF0020 J3U87_33670 PF08521 Two-component sensor kinase N-terminal J3U87_33670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_33670 PF00512 His Kinase A (phospho-acceptor) domain J3U87_33675 PF00072 Response regulator receiver domain J3U87_33675 PF00486 Transcriptional regulatory protein, C terminal J3U87_33680 PF00873 AcrB/AcrD/AcrF family J3U87_33685 PF13533 Biotin-lipoyl like J3U87_33690 PF02321 Outer membrane efflux protein J3U87_33730 PF00072 Response regulator receiver domain J3U87_33735 PF01590 GAF domain J3U87_33735 PF00512 His Kinase A (phospho-acceptor) domain J3U87_33735 PF00360 Phytochrome region J3U87_33735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_33735 PF08446 PAS fold J3U87_33740 PF12796 Ankyrin repeats (3 copies) J3U87_33745 PF00072 Response regulator receiver domain J3U87_33750 PF08448 PAS fold J3U87_33750 PF00563 EAL domain J3U87_33750 PF00990 Diguanylate cyclase, GGDEF domain J3U87_33755 PF07568 Histidine kinase J3U87_33755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_33755 PF12282 Signal transduction histidine kinase J3U87_33760 PF00512 His Kinase A (phospho-acceptor) domain J3U87_33760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_33760 PF01590 GAF domain J3U87_33760 PF00360 Phytochrome region J3U87_33760 PF08446 PAS fold J3U87_33765 PF00672 HAMP domain J3U87_33765 PF00072 Response regulator receiver domain J3U87_33765 PF01627 Hpt domain J3U87_33765 PF00512 His Kinase A (phospho-acceptor) domain J3U87_33765 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J3U87_33765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_33770 PF00072 Response regulator receiver domain J3U87_33785 PF02646 RmuC family J3U87_33820 PF01593 Flavin containing amine oxidoreductase J3U87_33835 PF00975 Thioesterase domain J3U87_33835 PF00501 AMP-binding enzyme J3U87_33835 PF00550 Phosphopantetheine attachment site J3U87_33835 PF00975 Thioesterase domain J3U87_33835 PF00550 Phosphopantetheine attachment site J3U87_33835 PF00668 Condensation domain J3U87_33835 PF13193 AMP-binding enzyme C-terminal domain J3U87_33835 PF00501 AMP-binding enzyme J3U87_33835 PF00668 Condensation domain J3U87_33835 PF13193 AMP-binding enzyme C-terminal domain J3U87_33865 PF03649 Uncharacterised protein family (UPF0014) J3U87_33870 PF08402 TOBE domain J3U87_33870 PF00005 ABC transporter J3U87_33880 PF00392 Bacterial regulatory proteins, gntR family J3U87_33880 PF07702 UTRA domain J3U87_33885 PF13732 Domain of unknown function (DUF4162) J3U87_33885 PF00005 ABC transporter J3U87_33895 PF13732 Domain of unknown function (DUF4162) J3U87_33895 PF00005 ABC transporter J3U87_33925 PF03793 PASTA domain J3U87_33925 PF00069 Protein kinase domain J3U87_33930 PF07676 WD40-like Beta Propeller Repeat J3U87_33930 PF03572 Peptidase family S41 J3U87_33930 PF14684 Tricorn protease C1 domain J3U87_33930 PF14685 Tricorn protease PDZ domain J3U87_33955 PF00797 N-acetyltransferase J3U87_33970 PF03466 LysR substrate binding domain J3U87_33970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3U87_33975 PF01370 NAD dependent epimerase/dehydratase family J3U87_33980 PF08361 MAATS-type transcriptional repressor, C-terminal region J3U87_33980 PF00440 Bacterial regulatory proteins, tetR family J3U87_33985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_33985 PF00512 His Kinase A (phospho-acceptor) domain J3U87_33990 PF02954 Bacterial regulatory protein, Fis family J3U87_33990 PF00072 Response regulator receiver domain J3U87_33990 PF00158 Sigma-54 interaction domain J3U87_34000 PF00474 Sodium:solute symporter family J3U87_34010 PF16177 Acetyl-coenzyme A synthetase N-terminus J3U87_34010 PF00501 AMP-binding enzyme J3U87_34010 PF13193 AMP-binding enzyme C-terminal domain J3U87_34015 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J3U87_34020 PF12833 Helix-turn-helix domain J3U87_34020 PF06719 AraC-type transcriptional regulator N-terminus J3U87_34050 PF01177 Asp/Glu/Hydantoin racemase J3U87_34055 PF00512 His Kinase A (phospho-acceptor) domain J3U87_34055 PF07495 Y_Y_Y domain J3U87_34055 PF00072 Response regulator receiver domain J3U87_34055 PF07494 Two component regulator propeller J3U87_34055 PF12833 Helix-turn-helix domain J3U87_34055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_34070 PF00873 AcrB/AcrD/AcrF family J3U87_34075 PF00529 HlyD membrane-fusion protein of T1SS J3U87_34075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_34080 PF02321 Outer membrane efflux protein J3U87_34085 PF08359 YsiA-like protein, C-terminal region J3U87_34085 PF00440 Bacterial regulatory proteins, tetR family J3U87_34120 PF00593 TonB dependent receptor J3U87_34120 PF07715 TonB-dependent Receptor Plug Domain J3U87_34130 PF00082 Subtilase family J3U87_34135 PF00144 Beta-lactamase J3U87_34140 PF00486 Transcriptional regulatory protein, C terminal J3U87_34140 PF00072 Response regulator receiver domain J3U87_34145 PF00672 HAMP domain J3U87_34145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_34145 PF00512 His Kinase A (phospho-acceptor) domain J3U87_34165 PF00873 AcrB/AcrD/AcrF family J3U87_34170 PF08334 Type II secretion system (T2SS), protein G J3U87_34175 PF12848 ABC transporter J3U87_34175 PF00005 ABC transporter J3U87_34180 PF00873 AcrB/AcrD/AcrF family J3U87_34190 PF02321 Outer membrane efflux protein J3U87_34195 PF00440 Bacterial regulatory proteins, tetR family J3U87_34195 PF17932 Tetracyclin repressor-like, C-terminal domain J3U87_34200 PF01817 Chorismate mutase type II J3U87_34200 PF02153 Prephenate dehydrogenase J3U87_34210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_34210 PF00512 His Kinase A (phospho-acceptor) domain J3U87_34210 PF16736 Single Cache-like J3U87_34210 PF00989 PAS fold J3U87_34215 PF00072 Response regulator receiver domain J3U87_34215 PF00486 Transcriptional regulatory protein, C terminal J3U87_34220 PF00069 Protein kinase domain J3U87_34220 PF03793 PASTA domain J3U87_34230 PF01638 HxlR-like helix-turn-helix J3U87_34240 PF00155 Aminotransferase class I and II J3U87_34245 PF02423 Ornithine cyclodeaminase/mu-crystallin family J3U87_34250 PF00291 Pyridoxal-phosphate dependent enzyme J3U87_34275 PF01381 Helix-turn-helix J3U87_34280 PF00550 Phosphopantetheine attachment site J3U87_34280 PF08659 KR domain J3U87_34280 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_34280 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_34280 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_34280 PF14765 Polyketide synthase dehydratase J3U87_34280 PF00698 Acyl transferase domain J3U87_34280 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_34280 PF08990 Erythronolide synthase docking J3U87_34330 PF00226 DnaJ domain J3U87_34330 PF00684 DnaJ central domain J3U87_34330 PF01556 DnaJ C terminal domain J3U87_34350 PF00069 Protein kinase domain J3U87_34350 PF03793 PASTA domain J3U87_34380 PF01695 IstB-like ATP binding protein J3U87_34420 PF05717 IS66 Orf2 like protein J3U87_34425 PF03050 Transposase IS66 family J3U87_34425 PF13005 zinc-finger binding domain of transposase IS66 J3U87_34425 PF13007 Transposase C of IS166 homeodomain J3U87_34425 PF13817 IS66 C-terminal element J3U87_34445 PF01555 DNA methylase J3U87_34455 PF04098 Rad52/22 family double-strand break repair protein J3U87_34485 PF01381 Helix-turn-helix J3U87_34485 PF00145 C-5 cytosine-specific DNA methylase J3U87_34490 PF00145 C-5 cytosine-specific DNA methylase J3U87_34515 PF00589 Phage integrase family J3U87_34515 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_34520 PF02899 Phage integrase, N-terminal SAM-like domain J3U87_34520 PF00589 Phage integrase family J3U87_34565 PF14659 Phage integrase, N-terminal SAM-like domain J3U87_34565 PF00589 Phage integrase family J3U87_34585 PF00082 Subtilase family J3U87_34600 PF00211 Adenylate and Guanylate cyclase catalytic domain J3U87_34600 PF00069 Protein kinase domain J3U87_34610 PF03793 PASTA domain J3U87_34610 PF00069 Protein kinase domain J3U87_34615 PF00082 Subtilase family J3U87_34625 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system J3U87_34690 PF00188 Cysteine-rich secretory protein family J3U87_34695 PF00266 Aminotransferase class-V J3U87_34705 PF08486 Stage II sporulation protein J3U87_34705 PF08486 Stage II sporulation protein J3U87_34710 PF02472 Biopolymer transport protein ExbD/TolR J3U87_34715 PF01618 MotA/TolQ/ExbB proton channel family J3U87_34720 PF07676 WD40-like Beta Propeller Repeat J3U87_34720 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J3U87_34720 PF00326 Prolyl oligopeptidase family J3U87_34725 PF02321 Outer membrane efflux protein J3U87_34730 PF00873 AcrB/AcrD/AcrF family J3U87_34735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3U87_34745 PF02371 Transposase IS116/IS110/IS902 family J3U87_34745 PF01548 Transposase J3U87_34755 PF00815 Histidinol dehydrogenase J3U87_34760 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J3U87_34760 PF01502 Phosphoribosyl-AMP cyclohydrolase J3U87_34765 PF00977 Histidine biosynthesis protein J3U87_34770 PF00117 Glutamine amidotransferase class-I J3U87_34775 PF00475 Imidazoleglycerol-phosphate dehydratase J3U87_34780 PF00155 Aminotransferase class I and II J3U87_34785 PF08029 HisG, C-terminal domain J3U87_34785 PF01634 ATP phosphoribosyltransferase J3U87_34800 PF13603 Leucyl-tRNA synthetase, Domain 2 J3U87_34800 PF09334 tRNA synthetases class I (M) J3U87_34800 PF08264 Anticodon-binding domain of tRNA J3U87_34800 PF00133 tRNA synthetases class I (I, L, M and V) J3U87_34810 PF03601 Conserved hypothetical protein 698 J3U87_34815 PF02868 Thermolysin metallopeptidase, alpha-helical domain J3U87_34815 PF01447 Thermolysin metallopeptidase, catalytic domain J3U87_34815 PF03413 Peptidase propeptide and YPEB domain J3U87_34815 PF07504 Fungalysin/Thermolysin Propeptide Motif J3U87_34815 PF04151 Bacterial pre-peptidase C-terminal domain J3U87_34820 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J3U87_34820 PF17203 Single cache domain 3 J3U87_34820 PF00989 PAS fold J3U87_34820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3U87_34825 PF00691 OmpA family J3U87_34830 PF00535 Glycosyl transferase family 2 J3U87_34835 PF00535 Glycosyl transferase family 2 J3U87_34845 PF00575 S1 RNA binding domain J3U87_34845 PF00773 RNB domain J3U87_34845 PF08206 Ribonuclease B OB domain J3U87_34845 PF17876 Cold shock domain J3U87_34855 PF01554 MatE J3U87_34865 PF00749 tRNA synthetases class I (E and Q), catalytic domain J3U87_34875 PF02887 Pyruvate kinase, alpha/beta domain J3U87_34875 PF00391 PEP-utilising enzyme, mobile domain J3U87_34875 PF00224 Pyruvate kinase, barrel domain J3U87_34895 PF00444 Ribosomal protein L36 J3U87_34900 PF00253 Ribosomal protein S14p/S29e J3U87_34905 PF02617 ATP-dependent Clp protease adaptor protein ClpS J3U87_34910 PF10431 C-terminal, D2-small domain, of ClpB protein J3U87_34910 PF02861 Clp amino terminal domain, pathogenicity island component J3U87_34910 PF17871 AAA lid domain J3U87_34910 PF07724 AAA domain (Cdc48 subfamily) J3U87_34910 PF00004 ATPase family associated with various cellular activities (AAA) J3U87_34960 PF00005 ABC transporter J3U87_34960 PF00664 ABC transporter transmembrane region J3U87_34965 PF08240 Alcohol dehydrogenase GroES-like domain J3U87_34965 PF14765 Polyketide synthase dehydratase J3U87_34965 PF00550 Phosphopantetheine attachment site J3U87_34965 PF08659 KR domain J3U87_34965 PF02801 Beta-ketoacyl synthase, C-terminal domain J3U87_34965 PF00109 Beta-ketoacyl synthase, N-terminal domain J3U87_34965 PF16197 Ketoacyl-synthetase C-terminal extension J3U87_34965 PF00698 Acyl transferase domain J3U87_34985 PF13335 Magnesium chelatase, subunit ChlI C-terminal J3U87_34985 PF01078 Magnesium chelatase, subunit ChlI J3U87_34990 PF02390 Putative methyltransferase