locus-tag	class	description
J3U87_00010	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_00020	COG0515	serine threonine protein kinase
J3U87_00020	COG2815	serine threonine protein kinase
J3U87_00030	COG0557	exoribonuclease II activity
J3U87_00040	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J3U87_00045	COG3275	phosphorelay sensor kinase activity
J3U87_00070	COG3852	Histidine kinase
J3U87_00095	COG0312	modulator of DNA gyrase
J3U87_00100	COG0312	modulator of DNA gyrase
J3U87_00105	COG0739	heme binding
J3U87_00115	COG4771	TonB-dependent receptor
J3U87_00140	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J3U87_00145	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_00175	COG1957	nucleoside hydrolase
J3U87_00200	COG0583	DNA-binding transcription factor activity
J3U87_00215	COG0542	response to heat
J3U87_00220	COG0542	response to heat
J3U87_00225	COG0542	response to heat
J3U87_00230	COG0300	oxidoreductase activity
J3U87_00250	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
J3U87_00250	COG1918	ferrous iron import across plasma membrane
J3U87_00255	COG1918	ferrous iron import across plasma membrane
J3U87_00295	COG0372	Belongs to the citrate synthase family
J3U87_00300	COG0372	Belongs to the citrate synthase family
J3U87_00305	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J3U87_00325	COG0612	Peptidase, M16
J3U87_00330	COG0612	Peptidase, M16
J3U87_00335	COG0326	Molecular chaperone. Has ATPase activity
J3U87_00340	COG3279	Response regulator of the LytR AlgR family
J3U87_00445	COG0515	serine threonine protein kinase
J3U87_00445	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_00475	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_00590	COG1164	Oligoendopeptidase f
J3U87_00605	COG2204	response regulator
J3U87_00615	COG0577	efflux transmembrane transporter activity
J3U87_00615	COG1136	(ABC) transporter
J3U87_00665	COG1518	maintenance of DNA repeat elements
J3U87_00695	COG0024	Methionine aminopeptidase
J3U87_00785	COG2204	response regulator
J3U87_00790	COG0784	Response regulator, receiver
J3U87_00790	COG2205	protein histidine kinase activity
J3U87_00805	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J3U87_00855	COG0463	Glycosyl transferase, family 2
J3U87_00865	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
J3U87_00900	COG1127	ABC transporter
J3U87_00905	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J3U87_00915	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
J3U87_00920	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
J3U87_00930	COG0714	Associated with various cellular activities
J3U87_00960	COG0784	Response regulator, receiver
J3U87_00960	COG0835	chemotaxis
J3U87_00985	COG4771	TonB-dependent receptor
J3U87_01010	COG2304	oxidoreductase activity
J3U87_01030	COG0714	Associated with various cellular activities
J3U87_01055	COG0297	glycogen (starch) synthase activity
J3U87_01055	COG0438	transferase activity, transferring glycosyl groups
J3U87_01080	COG2815	serine threonine protein kinase
J3U87_01080	COG0515	serine threonine protein kinase
J3U87_01125	COG1271	oxidase subunit
J3U87_01130	COG0515	serine threonine protein kinase
J3U87_01130	COG2815	serine threonine protein kinase
J3U87_01135	COG0612	Peptidase, M16
J3U87_01140	COG0826	peptidase U32
J3U87_01155	COG1132	(ABC) transporter
J3U87_01160	COG1132	(ABC) transporter
J3U87_01165	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3U87_01165	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
J3U87_01190	COG5001	Diguanylate cyclase
J3U87_01200	COG0745	RESPONSE REGULATOR receiver
J3U87_01205	COG2205	protein histidine kinase activity
J3U87_01215	COG0301	tRNA thio-modification
J3U87_01215	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J3U87_01245	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J3U87_01250	COG1960	acyl-CoA dehydrogenase activity
J3U87_01255	COG0183	Belongs to the thiolase family
J3U87_01260	COG1024	Enoyl-CoA hydratase
J3U87_01260	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3U87_01265	COG1309	transcriptional regulator
J3U87_01275	COG2130	NADP-dependent
J3U87_01300	COG2255	four-way junction helicase activity
J3U87_01315	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J3U87_01345	COG2224	Isocitrate lyase
J3U87_01350	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
J3U87_01370	COG0804	urea catabolic process
J3U87_01390	COG1404	Belongs to the peptidase S8 family
J3U87_01405	COG0678	peroxiredoxin activity
J3U87_01405	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J3U87_01420	COG2208	phosphoserine phosphatase activity
J3U87_01425	COG2885	chlorophyll binding
J3U87_01425	COG3047	cAMP biosynthetic process
J3U87_01445	COG0784	Response regulator, receiver
J3U87_01445	COG2198	Histidine kinase
J3U87_01445	COG0643	Histidine kinase
J3U87_01460	COG0840	transmembrane signaling receptor activity
J3U87_01485	COG1366	Belongs to the anti-sigma-factor antagonist family
J3U87_01505	COG4792	protein secretion
J3U87_01510	COG4791	protein targeting
J3U87_01515	COG4794	Type iii secretion
J3U87_01520	COG4790	Type iii secretion
J3U87_01645	COG0589	response to stress
J3U87_01650	COG4191	Histidine kinase
J3U87_01650	COG0784	Response regulator, receiver
J3U87_01670	COG1132	(ABC) transporter
J3U87_01680	COG0535	radical SAM domain protein
J3U87_01700	COG4191	Histidine kinase
J3U87_01700	COG0784	Response regulator, receiver
J3U87_01715	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_01730	COG3291	Pkd domain containing protein
J3U87_01735	COG3710	Transcriptional regulator
J3U87_01740	COG1368	sulfuric ester hydrolase activity
J3U87_01755	COG5002	protein histidine kinase activity
J3U87_01755	COG3447	MASE1 domain protein
J3U87_01755	COG5001	Diguanylate cyclase
J3U87_01775	COG0488	(ABC) transporter
J3U87_01790	COG1404	Belongs to the peptidase S8 family
J3U87_01810	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
J3U87_01815	COG0235	Class ii aldolase
J3U87_01830	COG2204	response regulator
J3U87_01835	COG1162	GTPase activity
J3U87_01850	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J3U87_01880	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
J3U87_01900	COG0640	Transcriptional regulator
J3U87_01915	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J3U87_01915	COG2070	2-Nitropropane dioxygenase
J3U87_01925	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_01925	COG0300	oxidoreductase activity
J3U87_01925	COG3321	synthase
J3U87_01925	COG4221	oxidoreductase activity
J3U87_01930	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_01930	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_01930	COG3321	synthase
J3U87_01930	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_01930	COG4221	oxidoreductase activity
J3U87_01930	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_01930	COG4221	oxidoreductase activity
J3U87_01930	COG3321	synthase
J3U87_01935	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_01935	COG4221	oxidoreductase activity
J3U87_01935	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_01935	COG3321	synthase
J3U87_01940	COG0500	methyltransferase
J3U87_01945	COG2272	Belongs to the type-B carboxylesterase lipase family
J3U87_01970	COG2133	pyrroloquinoline quinone binding
J3U87_01970	COG5183	chlorophyll binding
J3U87_01980	COG0515	serine threonine protein kinase
J3U87_01980	COG2815	serine threonine protein kinase
J3U87_01990	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J3U87_02010	COG0612	Peptidase, M16
J3U87_02015	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J3U87_02020	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J3U87_02045	COG2223	nitrite transmembrane transporter activity
J3U87_02050	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J3U87_02055	COG2146	nitrite reductase [NAD(P)H] activity
J3U87_02060	COG0243	molybdopterin cofactor binding
J3U87_02085	COG0076	glutamate decarboxylase activity
J3U87_02090	COG1819	glycosyl
J3U87_02105	COG3597	protein domain associated with
J3U87_02110	COG0824	Thioesterase
J3U87_02135	COG0745	RESPONSE REGULATOR receiver
J3U87_02135	COG2205	protein histidine kinase activity
J3U87_02135	COG3292	Two component regulator propeller
J3U87_02145	COG0745	RESPONSE REGULATOR receiver
J3U87_02145	COG2205	protein histidine kinase activity
J3U87_02145	COG3292	Two component regulator propeller
J3U87_02150	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J3U87_02160	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
J3U87_02165	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
J3U87_02175	COG0629	single-stranded DNA binding
J3U87_02195	COG1388	LysM domain
J3U87_02195	COG0791	NLP P60 protein
J3U87_02215	COG0583	DNA-binding transcription factor activity
J3U87_02225	COG0058	SHG alpha-glucan phosphorylase activity
J3U87_02260	COG2819	hydrolase of the alpha beta superfamily
J3U87_02265	COG0572	uridine kinase
J3U87_02275	COG1846	Transcriptional regulator
J3U87_02305	COG3025	triphosphatase activity
J3U87_02310	COG0148	phosphopyruvate hydratase activity
J3U87_02315	COG0564	pseudouridine synthase activity
J3U87_02380	COG1446	asparaginase
J3U87_02390	COG1309	transcriptional regulator
J3U87_02395	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_02420	COG0463	Glycosyl transferase, family 2
J3U87_02465	COG1136	(ABC) transporter
J3U87_02485	COG3275	phosphorelay sensor kinase activity
J3U87_02490	COG3279	Response regulator of the LytR AlgR family
J3U87_02495	COG3852	Histidine kinase
J3U87_02500	COG2204	response regulator
J3U87_02535	COG3227	Zinc metalloprotease (Elastase)
J3U87_02565	COG4771	TonB-dependent receptor
J3U87_02570	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
J3U87_02610	COG0793	Belongs to the peptidase S41A family
J3U87_02620	COG0583	DNA-binding transcription factor activity
J3U87_02640	COG2815	serine threonine protein kinase
J3U87_02640	COG0515	serine threonine protein kinase
J3U87_02725	COG3501	Rhs element vgr protein
J3U87_02765	COG3275	phosphorelay sensor kinase activity
J3U87_02770	COG3279	Response regulator of the LytR AlgR family
J3U87_02815	COG1393	Belongs to the ArsC family
J3U87_02830	COG0417	DNA replication proofreading
J3U87_02845	COG0069	glutamate synthase activity
J3U87_02850	COG0702	epimerase
J3U87_02875	COG0189	ligase activity
J3U87_02880	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J3U87_02890	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J3U87_02895	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J3U87_02905	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J3U87_02910	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
J3U87_02935	COG0745	RESPONSE REGULATOR receiver
J3U87_02940	COG0515	serine threonine protein kinase
J3U87_02940	COG2815	serine threonine protein kinase
J3U87_02970	COG0583	DNA-binding transcription factor activity
J3U87_03020	COG0842	Transport permease protein
J3U87_03020	COG1131	(ABC) transporter
J3U87_03020	COG1716	ATPase activity
J3U87_03035	COG0501	Belongs to the peptidase M48B family
J3U87_03040	COG0393	Putative heavy-metal-binding
J3U87_03045	COG0393	Putative heavy-metal-binding
J3U87_03050	COG3938	Belongs to the proline racemase family
J3U87_03070	COG0405	Gamma-glutamyltransferase
J3U87_03080	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J3U87_03090	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
J3U87_03095	COG3706	GGDEF domain
J3U87_03105	COG3321	synthase
J3U87_03105	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_03105	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_03105	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_03105	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_03115	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J3U87_03130	COG0681	Belongs to the peptidase S26 family
J3U87_03140	COG0860	N-Acetylmuramoyl-L-alanine amidase
J3U87_03145	COG2885	chlorophyll binding
J3U87_03160	COG0745	RESPONSE REGULATOR receiver
J3U87_03170	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_03175	COG1136	(ABC) transporter
J3U87_03180	COG1136	(ABC) transporter
J3U87_03180	COG0577	efflux transmembrane transporter activity
J3U87_03185	COG0577	efflux transmembrane transporter activity
J3U87_03185	COG1136	(ABC) transporter
J3U87_03190	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3U87_03230	COG0443	Heat shock 70 kDa protein
J3U87_03285	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
J3U87_03295	COG0515	serine threonine protein kinase
J3U87_03305	COG0739	heme binding
J3U87_03310	COG0653	protein targeting
J3U87_03315	COG0516	GMP reductase activity
J3U87_03315	COG0517	IMP dehydrogenase activity
J3U87_03330	COG3119	arylsulfatase activity
J3U87_03350	COG4771	TonB-dependent receptor
J3U87_03355	COG3290	protein histidine kinase activity
J3U87_03360	COG2814	Major facilitator Superfamily
J3U87_03380	COG0572	uridine kinase
J3U87_03385	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J3U87_03400	COG1012	belongs to the aldehyde dehydrogenase family
J3U87_03405	COG2084	Dehydrogenase
J3U87_03410	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_03415	COG1063	alcohol dehydrogenase
J3U87_03425	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J3U87_03450	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J3U87_03450	COG0646	methionine synthase
J3U87_03455	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
J3U87_03460	COG2819	hydrolase of the alpha beta superfamily
J3U87_03470	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
J3U87_03480	COG0515	serine threonine protein kinase
J3U87_03480	COG2815	serine threonine protein kinase
J3U87_03510	COG2832	Protein of unknown function (DUF454)
J3U87_03530	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_03530	COG4221	oxidoreductase activity
J3U87_03530	COG3321	synthase
J3U87_03530	COG0300	oxidoreductase activity
J3U87_03535	COG0076	glutamate decarboxylase activity
J3U87_03580	COG1063	alcohol dehydrogenase
J3U87_03625	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J3U87_03650	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
J3U87_03655	COG0733	neurotransmitter:sodium symporter activity
J3U87_03665	COG1012	belongs to the aldehyde dehydrogenase family
J3U87_03675	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_03715	COG1309	transcriptional regulator
J3U87_03720	COG1132	(ABC) transporter
J3U87_03750	COG5002	protein histidine kinase activity
J3U87_03750	COG0784	Response regulator, receiver
J3U87_03755	COG0784	Response regulator, receiver
J3U87_03760	COG2201	protein-glutamate methylesterase activity
J3U87_03765	COG4251	negative regulation of phosphorylation
J3U87_03770	COG0583	DNA-binding transcription factor activity
J3U87_03775	COG0631	protein serine/threonine phosphatase activity
J3U87_03785	COG0625	glutathione transferase activity
J3U87_03815	COG0643	Histidine kinase
J3U87_03815	COG2198	Histidine kinase
J3U87_03825	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J3U87_03855	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_03865	COG0395	ABC-type sugar transport system, permease component
J3U87_03870	COG3842	ATPase activity
J3U87_03885	COG2264	protein methyltransferase activity
J3U87_03890	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J3U87_03905	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3U87_03910	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
J3U87_03915	COG2050	protein possibly involved in aromatic compounds catabolism
J3U87_03920	COG0484	heat shock protein binding
J3U87_03930	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J3U87_03955	COG1404	Belongs to the peptidase S8 family
J3U87_03960	COG0564	pseudouridine synthase activity
J3U87_03965	COG2205	protein histidine kinase activity
J3U87_03965	COG0784	Response regulator, receiver
J3U87_03975	COG1881	PFAM PEBP family protein
J3U87_03985	COG1324	tolerance protein
J3U87_04005	COG3344	reverse transcriptase
J3U87_04015	COG0728	peptidoglycan biosynthetic process
J3U87_04020	COG0800	Aldolase
J3U87_04025	COG0837	glucose binding
J3U87_04035	COG0363	glucosamine-6-phosphate deaminase activity
J3U87_04040	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
J3U87_04050	COG0583	DNA-binding transcription factor activity
J3U87_04060	COG1942	4-Oxalocrotonate Tautomerase
J3U87_04070	COG4555	ABC transporter
J3U87_04080	COG3708	Transcriptional regulator
J3U87_04080	COG2207	Transcriptional regulator
J3U87_04095	COG0681	Belongs to the peptidase S26 family
J3U87_04105	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J3U87_04110	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J3U87_04115	COG1595	DNA-templated transcription, initiation
J3U87_04150	COG0515	serine threonine protein kinase
J3U87_04150	COG2815	serine threonine protein kinase
J3U87_04155	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_04245	COG1331	Highly conserved protein containing a thioredoxin domain
J3U87_04275	COG3227	Zinc metalloprotease (Elastase)
J3U87_04280	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J3U87_04290	COG1160	GTP binding
J3U87_04335	COG4772	TonB-dependent receptor
J3U87_04350	COG0625	glutathione transferase activity
J3U87_04370	COG0318	PFAM AMP-dependent synthetase and ligase
J3U87_04375	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J3U87_04385	COG0243	molybdopterin cofactor binding
J3U87_04390	COG0515	serine threonine protein kinase
J3U87_04390	COG2815	serine threonine protein kinase
J3U87_04395	COG2205	protein histidine kinase activity
J3U87_04395	COG3292	Two component regulator propeller
J3U87_04395	COG0745	RESPONSE REGULATOR receiver
J3U87_04410	COG2124	cytochrome p450
J3U87_04420	COG0789	Transcriptional regulator
J3U87_04430	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J3U87_04440	COG0457	Tetratricopeptide repeat
J3U87_04440	COG0515	serine threonine protein kinase
J3U87_04455	COG0515	serine threonine protein kinase
J3U87_04455	COG2815	serine threonine protein kinase
J3U87_04480	COG0515	serine threonine protein kinase
J3U87_04480	COG2815	serine threonine protein kinase
J3U87_04515	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
J3U87_04530	COG5002	protein histidine kinase activity
J3U87_04545	COG2205	protein histidine kinase activity
J3U87_04590	COG3436	PFAM IS66 Orf2 family protein
J3U87_04660	COG0515	serine threonine protein kinase
J3U87_04660	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J3U87_04665	COG3227	Zinc metalloprotease (Elastase)
J3U87_04680	COG0640	Transcriptional regulator
J3U87_04710	COG0745	RESPONSE REGULATOR receiver
J3U87_04715	COG2205	protein histidine kinase activity
J3U87_04730	COG3437	response regulator, receiver
J3U87_04735	COG2205	protein histidine kinase activity
J3U87_04735	COG2198	Histidine kinase
J3U87_04735	COG0784	Response regulator, receiver
J3U87_04740	COG5002	protein histidine kinase activity
J3U87_04745	COG1744	ABC transporter substrate-binding protein PnrA-like
J3U87_04750	COG1181	Belongs to the D-alanine--D-alanine ligase family
J3U87_04765	COG0506	proline dehydrogenase activity
J3U87_04815	COG4249	Peptidase C14 caspase catalytic subunit p20
J3U87_04815	COG2319	Wd-40 repeat
J3U87_04835	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J3U87_04840	COG0408	coproporphyrinogen oxidase activity
J3U87_04845	COG2363	Small membrane protein
J3U87_04865	COG3604	Transcriptional regulator
J3U87_04870	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J3U87_04875	COG0450	alkyl hydroperoxide reductase
J3U87_04895	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J3U87_04910	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J3U87_04940	COG1595	DNA-templated transcription, initiation
J3U87_05065	COG2433	Pfam Transposase IS66
J3U87_05070	COG1309	transcriptional regulator
J3U87_05105	COG1132	(ABC) transporter
J3U87_05115	COG4774	siderophore transport
J3U87_05150	COG4771	TonB-dependent receptor
J3U87_05155	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J3U87_05160	COG3459	Glycosyltransferase 36 associated
J3U87_05165	COG3291	Pkd domain containing protein
J3U87_05240	COG0583	DNA-binding transcription factor activity
J3U87_05260	COG3706	GGDEF domain
J3U87_05265	COG2815	serine threonine protein kinase
J3U87_05265	COG0515	serine threonine protein kinase
J3U87_05285	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
J3U87_05315	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J3U87_05370	COG4585	Histidine kinase
J3U87_05375	COG2197	response regulator
J3U87_05390	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J3U87_05395	COG0745	RESPONSE REGULATOR receiver
J3U87_05405	COG0587	DNA-directed DNA polymerase activity
J3U87_05410	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J3U87_05415	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J3U87_05430	COG4191	Histidine kinase
J3U87_05490	COG1404	Belongs to the peptidase S8 family
J3U87_05490	COG4935	Belongs to the peptidase S8 family
J3U87_05495	COG3609	addiction module antidote protein, CC2985 family
J3U87_05535	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J3U87_05540	COG0277	FAD linked oxidase domain protein
J3U87_05545	COG0277	FAD linked oxidase domain protein
J3U87_05550	COG0247	lactate metabolic process
J3U87_05590	COG0515	serine threonine protein kinase
J3U87_05590	COG2815	serine threonine protein kinase
J3U87_05625	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J3U87_05650	COG3710	Transcriptional regulator
J3U87_05660	COG0501	Belongs to the peptidase M48B family
J3U87_05685	COG3710	Transcriptional regulator
J3U87_05690	COG1131	(ABC) transporter
J3U87_05695	COG0842	Transport permease protein
J3U87_05700	COG2066	Belongs to the glutaminase family
J3U87_05705	COG2815	serine threonine protein kinase
J3U87_05705	COG0515	serine threonine protein kinase
J3U87_05710	COG0750	zinc metalloprotease
J3U87_05715	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
J3U87_05720	COG0205	6-phosphofructokinase activity
J3U87_05735	COG0572	uridine kinase
J3U87_05745	COG1100	Small GTP-binding protein
J3U87_05770	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J3U87_05770	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J3U87_05775	COG0501	Belongs to the peptidase M48B family
J3U87_05825	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J3U87_05840	COG0405	Gamma-glutamyltransferase
J3U87_05880	COG0517	IMP dehydrogenase activity
J3U87_05880	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
J3U87_05885	COG2877	3-deoxy-8-phosphooctulonate synthase activity
J3U87_05890	COG0504	CTP synthase activity
J3U87_05895	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
J3U87_05900	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J3U87_05905	COG0741	lytic transglycosylase activity
J3U87_05915	COG0217	transcriptional regulatory protein
J3U87_05925	COG3588	fructose-bisphosphate aldolase
J3U87_05935	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
J3U87_05940	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J3U87_06015	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J3U87_06020	COG1923	regulation of RNA biosynthetic process
J3U87_06025	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J3U87_06035	COG2353	YceI-like domain
J3U87_06055	COG3360	Dodecin
J3U87_06060	COG1404	Belongs to the peptidase S8 family
J3U87_06095	COG1815	bacterial-type flagellum-dependent cell motility
J3U87_06100	COG1558	bacterial-type flagellum-dependent cell motility
J3U87_06105	COG1677	Flagellar hook-basal body complex protein FliE
J3U87_06115	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J3U87_06125	COG1157	protein secretion by the type III secretion system
J3U87_06230	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3U87_06260	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J3U87_06265	COG0626	cystathionine gamma-synthase activity
J3U87_06280	COG1404	Belongs to the peptidase S8 family
J3U87_06285	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J3U87_06290	COG0724	RNA recognition motif
J3U87_06305	COG3501	Rhs element vgr protein
J3U87_06335	COG3011	Protein conserved in bacteria
J3U87_06340	COG5002	protein histidine kinase activity
J3U87_06340	COG2205	protein histidine kinase activity
J3U87_06340	COG0784	Response regulator, receiver
J3U87_06345	COG2135	peptidase activity
J3U87_06350	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J3U87_06350	COG0519	Catalyzes the synthesis of GMP from XMP
J3U87_06415	COG1194	a g-specific adenine glycosylase
J3U87_06435	COG2766	serine protein kinase
J3U87_06445	COG1022	Amp-dependent synthetase and ligase
J3U87_06455	COG1280	lysine exporter protein (LysE YggA)
J3U87_06475	COG0525	valine-tRNA ligase activity
J3U87_06515	COG4974	Belongs to the 'phage' integrase family
J3U87_06520	COG4974	Belongs to the 'phage' integrase family
J3U87_06545	COG0582	viral genome integration into host DNA
J3U87_06560	COG0395	ABC-type sugar transport system, permease component
J3U87_06575	COG3842	ATPase activity
J3U87_06585	COG0297	glycogen (starch) synthase activity
J3U87_06590	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J3U87_06595	COG2356	endonuclease I
J3U87_06600	COG0784	Response regulator, receiver
J3U87_06600	COG2205	protein histidine kinase activity
J3U87_06600	COG5002	protein histidine kinase activity
J3U87_06610	COG1960	acyl-CoA dehydrogenase activity
J3U87_06615	COG4948	Mandelate Racemase Muconate Lactonizing
J3U87_06630	COG3209	COG3209 Rhs family protein
J3U87_06635	COG4535	Mg2 and Co2 transporter CorC
J3U87_06640	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
J3U87_06650	COG0492	ferredoxin-NADP+ reductase activity
J3U87_06665	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J3U87_06695	COG2827	Endonuclease containing a URI domain
J3U87_06705	COG0473	3-isopropylmalate dehydrogenase activity
J3U87_06710	COG0066	3-isopropylmalate dehydratase activity
J3U87_06715	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
J3U87_06720	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J3U87_06795	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J3U87_06805	COG2815	serine threonine protein kinase
J3U87_06805	COG0515	serine threonine protein kinase
J3U87_06815	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J3U87_06820	COG0527	aspartate kinase activity
J3U87_06825	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J3U87_06835	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J3U87_06860	COG0523	cobalamin synthesis protein
J3U87_06880	COG0793	Belongs to the peptidase S41A family
J3U87_06895	COG0745	RESPONSE REGULATOR receiver
J3U87_06930	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J3U87_06965	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J3U87_06970	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J3U87_06995	COG4864	UPF0365 protein
J3U87_07005	COG1030	water channel activity
J3U87_07010	COG2890	protein-(glutamine-N5) methyltransferase activity
J3U87_07015	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
J3U87_07025	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J3U87_07030	COG0617	tRNA 3'-terminal CCA addition
J3U87_07045	COG0268	Binds directly to 16S ribosomal RNA
J3U87_07055	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J3U87_07060	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J3U87_07065	COG1960	acyl-CoA dehydrogenase activity
J3U87_07075	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J3U87_07080	COG1639	'signal transduction protein
J3U87_07085	COG1418	mRNA catabolic process
J3U87_07100	COG3604	Transcriptional regulator
J3U87_07135	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J3U87_07145	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J3U87_07165	COG0242	peptide deformylase activity
J3U87_07170	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J3U87_07180	COG0745	RESPONSE REGULATOR receiver
J3U87_07180	COG2205	protein histidine kinase activity
J3U87_07180	COG3292	Two component regulator propeller
J3U87_07185	COG0709	Synthesizes selenophosphate from selenide and ATP
J3U87_07205	COG1131	(ABC) transporter
J3U87_07225	COG3597	protein domain associated with
J3U87_07235	COG0154	amidase activity
J3U87_07265	COG0604	alcohol dehydrogenase
J3U87_07265	COG3321	synthase
J3U87_07280	COG0667	Aldo Keto reductase
J3U87_07285	COG0037	tRNA processing
J3U87_07300	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_07380	COG0247	lactate metabolic process
J3U87_07380	COG2181	nitrate reductase activity
J3U87_07400	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
J3U87_07420	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J3U87_07485	COG0471	metal ion transport
J3U87_07515	COG2770	Histidine kinase
J3U87_07515	COG2205	protein histidine kinase activity
J3U87_07520	COG0784	Response regulator, receiver
J3U87_07520	COG2205	protein histidine kinase activity
J3U87_07525	COG0129	dihydroxy-acid dehydratase activity
J3U87_07530	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J3U87_07540	COG3978	acetolactate synthase activity
J3U87_07545	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
J3U87_07580	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J3U87_07615	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_07650	COG0745	RESPONSE REGULATOR receiver
J3U87_07690	COG1404	Belongs to the peptidase S8 family
J3U87_07700	COG0420	3'-5' exonuclease activity
J3U87_07715	COG3568	Endonuclease Exonuclease Phosphatase
J3U87_07750	COG1022	Amp-dependent synthetase and ligase
J3U87_07775	COG4152	abc transporter atp-binding protein
J3U87_07785	COG1032	radical SAM domain protein
J3U87_07820	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
J3U87_07845	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J3U87_07850	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
J3U87_07855	COG3185	4-Hydroxyphenylpyruvate dioxygenase
J3U87_07860	COG1522	sequence-specific DNA binding
J3U87_07880	COG2986	histidine ammonia-lyase
J3U87_07890	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_07895	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J3U87_07930	COG2205	protein histidine kinase activity
J3U87_07935	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J3U87_07945	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
J3U87_07950	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
J3U87_07955	COG3119	arylsulfatase activity
J3U87_07960	COG1324	tolerance protein
J3U87_07965	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J3U87_07985	COG1960	acyl-CoA dehydrogenase activity
J3U87_08000	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J3U87_08045	COG0515	serine threonine protein kinase
J3U87_08045	COG2815	serine threonine protein kinase
J3U87_08055	COG4191	Histidine kinase
J3U87_08080	COG0714	Associated with various cellular activities
J3U87_08110	COG1776	CheC inhibitor of MCP methylation
J3U87_08110	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J3U87_08115	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J3U87_08120	COG1191	sigma factor activity
J3U87_08130	COG1419	protein localization to endoplasmic reticulum
J3U87_08135	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J3U87_08140	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J3U87_08145	COG1684	flagellar biosynthetic protein fliR
J3U87_08150	COG1987	bacterial-type flagellum assembly
J3U87_08155	COG1338	Plays a role in the flagellum-specific transport system
J3U87_08165	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J3U87_08215	COG0534	Mate efflux family protein
J3U87_08225	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
J3U87_08230	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J3U87_08245	COG2080	2 iron, 2 sulfur cluster binding
J3U87_08265	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J3U87_08275	COG0402	S-adenosylhomocysteine deaminase activity
J3U87_08290	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J3U87_08295	COG0641	radical SAM
J3U87_08300	COG1104	cysteine desulfurase activity
J3U87_08305	COG0509	glycine decarboxylation via glycine cleavage system
J3U87_08370	COG0745	RESPONSE REGULATOR receiver
J3U87_08425	COG0640	Transcriptional regulator
J3U87_08445	COG2267	carboxylic ester hydrolase activity
J3U87_08460	COG0604	alcohol dehydrogenase
J3U87_08460	COG3321	synthase
J3U87_08465	COG2226	methyltransferase
J3U87_08500	COG2204	response regulator
J3U87_08520	COG3279	Response regulator of the LytR AlgR family
J3U87_08535	COG0439	Biotin carboxylase
J3U87_08550	COG0546	phosphoglycolate phosphatase activity
J3U87_08555	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J3U87_08565	COG2267	carboxylic ester hydrolase activity
J3U87_08595	COG2205	protein histidine kinase activity
J3U87_08595	COG0745	RESPONSE REGULATOR receiver
J3U87_08595	COG3292	Two component regulator propeller
J3U87_08600	COG2197	response regulator
J3U87_08615	COG1994	Peptidase M50
J3U87_08625	COG0793	Belongs to the peptidase S41A family
J3U87_08625	COG4946	Tricorn protease homolog
J3U87_08635	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_08640	COG3132	Protein of unknown function, DUF480
J3U87_08645	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_08645	COG0515	serine threonine protein kinase
J3U87_08685	COG2815	serine threonine protein kinase
J3U87_08685	COG0515	serine threonine protein kinase
J3U87_08700	COG1051	belongs to the nudix hydrolase family
J3U87_08720	COG0475	glutathione-regulated potassium exporter activity
J3U87_08740	COG3321	synthase
J3U87_08740	COG0604	alcohol dehydrogenase
J3U87_08745	COG3321	synthase
J3U87_08745	COG0604	alcohol dehydrogenase
J3U87_08750	COG0604	alcohol dehydrogenase
J3U87_08750	COG3321	synthase
J3U87_08760	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J3U87_08765	COG4191	Histidine kinase
J3U87_08765	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3U87_08770	COG3437	response regulator, receiver
J3U87_08770	COG0784	Response regulator, receiver
J3U87_08795	COG1842	Phage shock protein A
J3U87_08805	COG0714	Associated with various cellular activities
J3U87_08855	COG0535	radical SAM domain protein
J3U87_08860	COG1132	(ABC) transporter
J3U87_08875	COG4953	penicillin-binding protein 1C
J3U87_08885	COG3217	Mosc domain protein beta barrel domain protein
J3U87_08885	COG0633	Ferredoxin
J3U87_08895	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J3U87_08905	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J3U87_08905	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J3U87_08910	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J3U87_08915	COG0228	four-way junction DNA binding
J3U87_08925	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J3U87_08930	COG0336	Belongs to the RNA methyltransferase TrmD family
J3U87_08935	COG4752	Belongs to the RNA methyltransferase TrmD family
J3U87_08940	COG0335	large ribosomal subunit rRNA binding
J3U87_08950	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J3U87_08955	COG0346	lactoylglutathione lyase activity
J3U87_08965	COG1404	Belongs to the peptidase S8 family
J3U87_09005	COG0542	response to heat
J3U87_09020	COG4771	TonB-dependent receptor
J3U87_09025	COG2333	competence protein COMEC
J3U87_09025	COG0658	competence protein
J3U87_09050	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
J3U87_09055	COG4974	Belongs to the 'phage' integrase family
J3U87_09095	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
J3U87_09100	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J3U87_09100	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J3U87_09125	COG0442	prolyl-tRNA aminoacylation
J3U87_09135	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
J3U87_09140	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
J3U87_09155	COG0210	DNA helicase
J3U87_09165	COG0745	RESPONSE REGULATOR receiver
J3U87_09170	COG1100	Small GTP-binding protein
J3U87_09175	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
J3U87_09180	COG0280	phosphate acetyltransferase
J3U87_09185	COG2094	Belongs to the DNA glycosylase MPG family
J3U87_09190	COG0515	serine threonine protein kinase
J3U87_09190	COG2815	serine threonine protein kinase
J3U87_09215	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J3U87_09235	COG4134	Bacterial extracellular solute-binding protein
J3U87_09275	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
J3U87_09280	COG0488	(ABC) transporter
J3U87_09285	COG0742	ribosomal rna small subunit methyltransferase
J3U87_09295	COG2885	chlorophyll binding
J3U87_09300	COG0823	Involved in the tonB-independent uptake of proteins
J3U87_09315	COG0811	peptide transport
J3U87_09320	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J3U87_09325	COG0497	DNA recombination
J3U87_09330	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J3U87_09350	COG0359	binds to the 23S rRNA
J3U87_09355	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
J3U87_09365	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J3U87_09370	COG3710	Transcriptional regulator
J3U87_09390	COG5002	protein histidine kinase activity
J3U87_09400	COG0346	lactoylglutathione lyase activity
J3U87_09405	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J3U87_09420	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
J3U87_09425	COG1201	RNA secondary structure unwinding
J3U87_09455	COG0616	signal peptide processing
J3U87_09465	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
J3U87_09470	COG0708	Exodeoxyribonuclease III
J3U87_09500	COG1519	Transferase
J3U87_09505	COG0825	malonyl-CoA metabolic process
J3U87_09510	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J3U87_09510	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
J3U87_09520	COG1137	ATPase activity
J3U87_09525	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
J3U87_09530	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J3U87_09535	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
J3U87_09540	COG2815	serine threonine protein kinase
J3U87_09540	COG0515	serine threonine protein kinase
J3U87_09570	COG0835	chemotaxis
J3U87_09570	COG0784	Response regulator, receiver
J3U87_09580	COG2205	protein histidine kinase activity
J3U87_09585	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
J3U87_09595	COG3001	Fructosamine kinase
J3U87_09605	COG0028	Belongs to the TPP enzyme family
J3U87_09610	COG0492	ferredoxin-NADP+ reductase activity
J3U87_09620	COG1100	Small GTP-binding protein
J3U87_09630	COG0142	geranyltranstransferase activity
J3U87_09635	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J3U87_09645	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
J3U87_09650	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
J3U87_09660	COG2234	aminopeptidase activity
J3U87_09665	COG1492	cobalamin metabolic process
J3U87_09695	COG0739	heme binding
J3U87_09695	COG0741	lytic transglycosylase activity
J3U87_09695	COG1196	nuclear chromosome segregation
J3U87_09700	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J3U87_09705	COG2166	iron-sulfur cluster assembly
J3U87_09735	COG0859	PFAM glycosyl transferase family 9
J3U87_09740	COG0859	PFAM glycosyl transferase family 9
J3U87_09745	COG1420	regulation of RNA biosynthetic process
J3U87_09750	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J3U87_09755	COG0443	Heat shock 70 kDa protein
J3U87_09760	COG0484	heat shock protein binding
J3U87_09765	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J3U87_09780	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J3U87_09785	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
J3U87_09790	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J3U87_09810	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
J3U87_09820	COG0564	pseudouridine synthase activity
J3U87_09825	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
J3U87_09835	COG0745	RESPONSE REGULATOR receiver
J3U87_09855	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
J3U87_09860	COG0218	Necessary for normal cell division and for the maintenance of normal septation
J3U87_09865	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J3U87_09870	COG0740	serine-type endopeptidase activity
J3U87_09875	COG0544	peptidyl-prolyl cis-trans isomerase activity
J3U87_09905	COG1509	lysine 2,3-aminomutase activity
J3U87_09925	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
J3U87_09930	COG1074	ATP-dependent DNA helicase activity
J3U87_09945	COG0545	Peptidyl-prolyl cis-trans isomerase
J3U87_09955	COG0004	ammonium transporteR
J3U87_09960	COG0067	glutamate synthase
J3U87_09960	COG0069	glutamate synthase activity
J3U87_09960	COG0070	glutamate synthase
J3U87_09965	COG2274	protein secretion by the type I secretion system
J3U87_09995	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
J3U87_10015	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_10050	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
J3U87_10070	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J3U87_10090	COG1595	DNA-templated transcription, initiation
J3U87_10100	COG0564	pseudouridine synthase activity
J3U87_10125	COG3279	Response regulator of the LytR AlgR family
J3U87_10130	COG2972	Histidine kinase
J3U87_10135	COG1136	(ABC) transporter
J3U87_10150	COG1611	Belongs to the LOG family
J3U87_10165	COG0481	GTPase activity
J3U87_10170	COG1132	(ABC) transporter
J3U87_10175	COG0166	Belongs to the GPI family
J3U87_10180	COG2226	methyltransferase
J3U87_10195	COG0745	RESPONSE REGULATOR receiver
J3U87_10195	COG2205	protein histidine kinase activity
J3U87_10195	COG3292	Two component regulator propeller
J3U87_10205	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
J3U87_10215	COG0443	Heat shock 70 kDa protein
J3U87_10220	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J3U87_10225	COG0484	heat shock protein binding
J3U87_10250	COG0367	asparagine synthase
J3U87_10280	COG0156	8-amino-7-oxononanoate synthase activity
J3U87_10285	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
J3U87_10305	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
J3U87_10310	COG1663	tetraacyldisaccharide 4'-kinase activity
J3U87_10315	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J3U87_10320	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J3U87_10320	COG0646	methionine synthase
J3U87_10330	COG0552	protein localization to endoplasmic reticulum
J3U87_10365	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J3U87_10380	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J3U87_10385	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J3U87_10390	COG0758	DNA mediated transformation
J3U87_10410	COG2226	methyltransferase
J3U87_10420	COG1757	Na H antiporter
J3U87_10430	COG0095	Lipoate-protein ligase
J3U87_10435	COG0686	Belongs to the AlaDH PNT family
J3U87_10455	COG0488	(ABC) transporter
J3U87_10500	COG3347	Dehydrogenase
J3U87_10500	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_10540	COG1757	Na H antiporter
J3U87_10550	COG4249	Peptidase C14 caspase catalytic subunit p20
J3U87_10550	COG2319	Wd-40 repeat
J3U87_10555	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
J3U87_10590	COG3586	endonuclease activity
J3U87_10600	COG1446	asparaginase
J3U87_10645	COG0745	RESPONSE REGULATOR receiver
J3U87_10650	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J3U87_10655	COG0085	RNA polymerase activity
J3U87_10660	COG0222	ribosome binding
J3U87_10665	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J3U87_10675	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J3U87_10695	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J3U87_10730	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J3U87_10755	COG0515	serine threonine protein kinase
J3U87_10755	COG2815	serine threonine protein kinase
J3U87_10770	COG0463	Glycosyl transferase, family 2
J3U87_10780	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J3U87_10815	COG0512	Glutamine amidotransferase of anthranilate synthase
J3U87_10820	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J3U87_10835	COG0616	signal peptide processing
J3U87_10840	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
J3U87_10855	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J3U87_10860	COG0360	Binds together with S18 to 16S ribosomal RNA
J3U87_10865	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
J3U87_10870	COG0193	aminoacyl-tRNA hydrolase activity
J3U87_10875	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
J3U87_10880	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J3U87_10890	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J3U87_10905	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J3U87_10920	COG0667	Aldo Keto reductase
J3U87_10925	COG1136	(ABC) transporter
J3U87_10945	COG4771	TonB-dependent receptor
J3U87_10975	COG2304	oxidoreductase activity
J3U87_11005	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J3U87_11015	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
J3U87_11020	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J3U87_11055	COG1131	(ABC) transporter
J3U87_11065	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J3U87_11065	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J3U87_11070	COG0745	RESPONSE REGULATOR receiver
J3U87_11080	COG2894	cell division
J3U87_11110	COG3852	Histidine kinase
J3U87_11120	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
J3U87_11130	COG2204	response regulator
J3U87_11135	COG4191	Histidine kinase
J3U87_11140	COG1459	type II secretion system
J3U87_11150	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J3U87_11155	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J3U87_11160	COG0439	Biotin carboxylase
J3U87_11165	COG0511	ligase activity, forming carbon-carbon bonds
J3U87_11215	COG0484	heat shock protein binding
J3U87_11240	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
J3U87_11265	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_11285	COG0109	protoheme IX farnesyltransferase activity
J3U87_11295	COG3101	peptidyl-lysine hydroxylation
J3U87_11300	COG1217	gtp-binding protein TYPA
J3U87_11305	COG0011	TIGRFAM Protein of
J3U87_11310	COG1515	deoxyribonuclease V activity
J3U87_11325	COG2815	serine threonine protein kinase
J3U87_11325	COG0515	serine threonine protein kinase
J3U87_11335	COG0233	cytoplasmic translational termination
J3U87_11340	COG0528	UMP kinase activity
J3U87_11345	COG0012	GTP binding
J3U87_11350	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J3U87_11360	COG0745	RESPONSE REGULATOR receiver
J3U87_11365	COG0303	'Molybdopterin
J3U87_11395	COG0488	(ABC) transporter
J3U87_11410	COG1760	l-serine dehydratase
J3U87_11415	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
J3U87_11420	COG0473	3-isopropylmalate dehydrogenase activity
J3U87_11460	COG0137	argininosuccinate synthase activity
J3U87_11465	COG0165	Argininosuccinate lyase
J3U87_11475	COG0745	RESPONSE REGULATOR receiver
J3U87_11495	COG2204	response regulator
J3U87_11510	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J3U87_11515	COG1185	polyribonucleotide nucleotidyltransferase activity
J3U87_11540	COG2986	histidine ammonia-lyase
J3U87_11545	COG0674	pyruvate-flavodoxin oxidoreductase activity
J3U87_11545	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
J3U87_11550	COG1013	pyruvate-flavodoxin oxidoreductase activity
J3U87_11555	COG0784	Response regulator, receiver
J3U87_11555	COG4191	Histidine kinase
J3U87_11590	COG0180	Tryptophanyl-tRNA synthetase
J3U87_11595	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
J3U87_11600	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J3U87_11615	COG1012	belongs to the aldehyde dehydrogenase family
J3U87_11630	COG1595	DNA-templated transcription, initiation
J3U87_11645	COG0702	epimerase
J3U87_11655	COG0717	Belongs to the dCTP deaminase family
J3U87_11665	COG1530	ribonuclease E activity
J3U87_11670	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J3U87_11675	COG0047	phosphoribosylformylglycinamidine synthase activity
J3U87_11690	COG0356	it plays a direct role in the translocation of protons across the membrane
J3U87_11695	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J3U87_11725	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
J3U87_11730	COG1183	phosphatidylcholine synthase activity
J3U87_11740	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
J3U87_11745	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
J3U87_11770	COG0577	efflux transmembrane transporter activity
J3U87_11770	COG1136	(ABC) transporter
J3U87_11775	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J3U87_11810	COG2252	PERMEase
J3U87_11830	COG0842	Transport permease protein
J3U87_11830	COG1131	(ABC) transporter
J3U87_11830	COG1716	ATPase activity
J3U87_11840	COG0515	serine threonine protein kinase
J3U87_11840	COG2815	serine threonine protein kinase
J3U87_11860	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J3U87_11870	COG1104	cysteine desulfurase activity
J3U87_11875	COG0142	geranyltranstransferase activity
J3U87_11880	COG1722	exodeoxyribonuclease VII activity
J3U87_11885	COG1570	exodeoxyribonuclease VII activity
J3U87_11890	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J3U87_11895	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
J3U87_11925	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J3U87_11925	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J3U87_11940	COG3279	Response regulator of the LytR AlgR family
J3U87_11945	COG0778	Nitroreductase
J3U87_11945	COG1478	Catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives
J3U87_11950	COG3292	Two component regulator propeller
J3U87_11950	COG0745	RESPONSE REGULATOR receiver
J3U87_11950	COG2205	protein histidine kinase activity
J3U87_11955	COG2226	methyltransferase
J3U87_11980	COG1805	sodium ion transport
J3U87_11985	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J3U87_11995	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J3U87_12000	COG2871	sodium ion transport
J3U87_12045	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J3U87_12055	COG0322	excinuclease ABC activity
J3U87_12065	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J3U87_12075	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J3U87_12080	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J3U87_12095	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
J3U87_12110	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J3U87_12120	COG5002	protein histidine kinase activity
J3U87_12125	COG0745	RESPONSE REGULATOR receiver
J3U87_12150	COG0084	hydrolase, TatD family'
J3U87_12170	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J3U87_12175	COG0688	phosphatidylethanolamine metabolic process
J3U87_12185	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J3U87_12190	COG1755	Isoprenylcysteine carboxyl methyltransferase
J3U87_12215	COG0732	type I restriction modification DNA specificity domain
J3U87_12255	COG0259	pyridoxamine-phosphate oxidase activity
J3U87_12260	COG2962	Rard protein
J3U87_12265	COG0438	transferase activity, transferring glycosyl groups
J3U87_12285	COG0583	DNA-binding transcription factor activity
J3U87_12290	COG0745	RESPONSE REGULATOR receiver
J3U87_12295	COG0784	Response regulator, receiver
J3U87_12300	COG0802	atpase or kinase
J3U87_12305	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J3U87_12305	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
J3U87_12325	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
J3U87_12330	COG0515	serine threonine protein kinase
J3U87_12340	COG3604	Transcriptional regulator
J3U87_12360	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
J3U87_12360	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
J3U87_12365	COG1703	isobutyryl-CoA mutase activity
J3U87_12380	COG0573	inorganic phosphate transmembrane transporter activity
J3U87_12385	COG0581	inorganic phosphate transmembrane transporter activity
J3U87_12390	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J3U87_12395	COG0704	Plays a role in the regulation of phosphate uptake
J3U87_12405	COG2153	protein acetylation
J3U87_12410	COG0585	pseudouridine synthase activity
J3U87_12415	COG0739	heme binding
J3U87_12415	COG0741	lytic transglycosylase activity
J3U87_12415	COG1196	nuclear chromosome segregation
J3U87_12420	COG0537	adenosine 5'-monophosphoramidase activity
J3U87_12425	COG2815	serine threonine protein kinase
J3U87_12425	COG0515	serine threonine protein kinase
J3U87_12430	COG1181	Belongs to the D-alanine--D-alanine ligase family
J3U87_12435	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J3U87_12445	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
J3U87_12450	COG0799	negative regulation of ribosome biogenesis
J3U87_12455	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J3U87_12460	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J3U87_12465	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J3U87_12475	COG1024	Enoyl-CoA hydratase
J3U87_12485	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J3U87_12555	COG0848	biopolymer transport protein
J3U87_12565	COG0811	peptide transport
J3U87_12570	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J3U87_12590	COG2204	response regulator
J3U87_12605	COG1366	Belongs to the anti-sigma-factor antagonist family
J3U87_12610	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J3U87_12615	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J3U87_12620	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J3U87_12630	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J3U87_12635	COG0450	alkyl hydroperoxide reductase
J3U87_12640	COG4279	zinc finger
J3U87_12645	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J3U87_12665	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J3U87_12675	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J3U87_12680	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J3U87_12690	COG0745	RESPONSE REGULATOR receiver
J3U87_12695	COG5002	protein histidine kinase activity
J3U87_12710	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J3U87_12730	COG1228	amidohydrolase
J3U87_12740	COG0762	integral membrane protein
J3U87_12745	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J3U87_12760	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J3U87_12775	COG1115	amino acid carrier protein
J3U87_12785	COG0583	DNA-binding transcription factor activity
J3U87_12790	COG1596	polysaccharide export
J3U87_12790	COG1555	photosystem II stabilization
J3U87_12815	COG1131	(ABC) transporter
J3U87_12840	COG1596	polysaccharide export
J3U87_12870	COG1215	transferase activity, transferring glycosyl groups
J3U87_12880	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J3U87_12900	COG2815	serine threonine protein kinase
J3U87_12900	COG0515	serine threonine protein kinase
J3U87_12930	COG5002	protein histidine kinase activity
J3U87_12940	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J3U87_12945	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J3U87_12950	COG1862	Preprotein translocase
J3U87_12955	COG0343	queuine tRNA-ribosyltransferase activity
J3U87_12965	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J3U87_12970	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J3U87_12975	COG1459	type II secretion system
J3U87_13015	COG1450	Type ii and iii secretion system protein
J3U87_13030	COG0284	orotidine-5'-phosphate decarboxylase activity
J3U87_13110	COG0745	RESPONSE REGULATOR receiver
J3U87_13115	COG5002	protein histidine kinase activity
J3U87_13130	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J3U87_13135	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J3U87_13145	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J3U87_13160	COG0006	proline dipeptidase activity
J3U87_13200	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J3U87_13205	COG1254	Belongs to the acylphosphatase family
J3U87_13210	COG4771	TonB-dependent receptor
J3U87_13220	COG0527	aspartate kinase activity
J3U87_13220	COG0460	homoserine dehydrogenase
J3U87_13225	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J3U87_13225	COG3453	Protein conserved in bacteria
J3U87_13235	COG1331	Highly conserved protein containing a thioredoxin domain
J3U87_13240	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J3U87_13245	COG1132	(ABC) transporter
J3U87_13255	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_13255	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_13255	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_13255	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_13255	COG3321	synthase
J3U87_13265	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_13265	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_13265	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_13265	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_13265	COG3321	synthase
J3U87_13270	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_13270	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_13270	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_13270	COG3321	synthase
J3U87_13270	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_13270	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_13270	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_13270	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_13270	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_13270	COG3321	synthase
J3U87_13275	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_13275	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_13275	COG3321	synthase
J3U87_13275	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_13275	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_13280	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_13280	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_13280	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_13280	COG4221	oxidoreductase activity
J3U87_13280	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_13280	COG3321	synthase
J3U87_13280	COG3321	synthase
J3U87_13280	COG4221	oxidoreductase activity
J3U87_13285	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_13285	COG0300	oxidoreductase activity
J3U87_13285	COG3321	synthase
J3U87_13285	COG4221	oxidoreductase activity
J3U87_13300	COG1819	glycosyl
J3U87_13310	COG2192	nodulation
J3U87_13315	COG0515	serine threonine protein kinase
J3U87_13325	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J3U87_13325	COG0438	transferase activity, transferring glycosyl groups
J3U87_13330	COG0671	phosphoesterase, PA-phosphatase related
J3U87_13335	COG4946	Tricorn protease homolog
J3U87_13335	COG0793	Belongs to the peptidase S41A family
J3U87_13340	COG0577	efflux transmembrane transporter activity
J3U87_13345	COG0577	efflux transmembrane transporter activity
J3U87_13345	COG1136	(ABC) transporter
J3U87_13350	COG4191	Histidine kinase
J3U87_13355	COG2204	response regulator
J3U87_13370	COG1940	carbohydrate kinase activity
J3U87_13375	COG0363	glucosamine-6-phosphate deaminase activity
J3U87_13410	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J3U87_13420	COG0463	Glycosyl transferase, family 2
J3U87_13420	COG1216	Glycosyl transferase, family 2
J3U87_13425	COG5002	protein histidine kinase activity
J3U87_13430	COG0515	serine threonine protein kinase
J3U87_13440	COG0179	Fumarylacetoacetate (FAA) hydrolase
J3U87_13490	COG1309	transcriptional regulator
J3U87_13510	COG2815	serine threonine protein kinase
J3U87_13510	COG0515	serine threonine protein kinase
J3U87_13520	COG1297	OPT oligopeptide transporter protein
J3U87_13540	COG0022	dehydrogenase e1 component
J3U87_13545	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J3U87_13560	COG2226	methyltransferase
J3U87_13595	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J3U87_13600	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J3U87_13605	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J3U87_13640	COG2192	nodulation
J3U87_13690	COG2319	Wd-40 repeat
J3U87_13690	COG4249	Peptidase C14 caspase catalytic subunit p20
J3U87_13695	COG4771	TonB-dependent receptor
J3U87_13715	COG3959	Transketolase, thiamine diphosphate binding domain
J3U87_13720	COG3958	Transketolase
J3U87_13725	COG1181	Belongs to the D-alanine--D-alanine ligase family
J3U87_13755	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J3U87_13765	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J3U87_13765	COG1648	precorrin-2 dehydrogenase activity
J3U87_13775	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J3U87_13785	COG0175	sulfate reduction
J3U87_13795	COG0175	sulfate reduction
J3U87_13800	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J3U87_13830	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
J3U87_13850	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J3U87_13865	COG0784	Response regulator, receiver
J3U87_13865	COG2205	protein histidine kinase activity
J3U87_13865	COG2198	Histidine kinase
J3U87_13880	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J3U87_13885	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J3U87_13890	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J3U87_13895	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J3U87_13900	COG0195	Participates in both transcription termination and antitermination
J3U87_13905	COG0779	Required for maturation of 30S ribosomal subunits
J3U87_13930	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3U87_13930	COG4191	Histidine kinase
J3U87_13935	COG2204	response regulator
J3U87_13940	COG0698	ribose 5-phosphate isomerase
J3U87_13960	COG2183	response to ionizing radiation
J3U87_13965	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J3U87_13970	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J3U87_13975	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J3U87_13985	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J3U87_13990	COG0542	response to heat
J3U87_13995	COG1136	(ABC) transporter
J3U87_14000	COG4591	ABC-type transport system involved in lipoprotein release permease component
J3U87_14015	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J3U87_14020	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
J3U87_14035	COG2022	thiamine diphosphate biosynthetic process
J3U87_14040	COG0352	thiamine-phosphate diphosphorylase activity
J3U87_14055	COG0745	RESPONSE REGULATOR receiver
J3U87_14070	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
J3U87_14075	COG0815	Transfers the fatty acyl group on membrane lipoproteins
J3U87_14080	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J3U87_14085	COG0022	dehydrogenase e1 component
J3U87_14095	COG0564	pseudouridine synthase activity
J3U87_14100	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
J3U87_14145	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J3U87_14155	COG0215	cysteine-tRNA ligase activity
J3U87_14160	COG2949	membrane
J3U87_14190	COG1078	dGTPase activity
J3U87_14225	COG2815	serine threonine protein kinase
J3U87_14225	COG0515	serine threonine protein kinase
J3U87_14245	COG1739	Uncharacterized protein family UPF0029
J3U87_14250	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J3U87_14265	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J3U87_14280	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
J3U87_14285	COG0515	serine threonine protein kinase
J3U87_14285	COG2815	serine threonine protein kinase
J3U87_14290	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J3U87_14305	COG1127	ABC transporter
J3U87_14310	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J3U87_14320	COG0358	DNA primase activity
J3U87_14335	COG1012	belongs to the aldehyde dehydrogenase family
J3U87_14340	COG0667	Aldo Keto reductase
J3U87_14345	COG2373	Large extracellular alpha-helical protein
J3U87_14375	COG0298	carbon dioxide binding
J3U87_14380	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
J3U87_14385	COG0375	protein maturation
J3U87_14400	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J3U87_14405	COG0543	2 iron, 2 sulfur cluster binding
J3U87_14420	COG0574	Belongs to the PEP-utilizing enzyme family
J3U87_14420	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J3U87_14425	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J3U87_14430	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J3U87_14435	COG0508	dehydrogenase complex catalyzes the overall conversion of
J3U87_14435	COG0022	dehydrogenase e1 component
J3U87_14475	COG2089	acid synthase
J3U87_14490	COG0154	amidase activity
J3U87_14495	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J3U87_14515	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J3U87_14535	COG0071	Belongs to the small heat shock protein (HSP20) family
J3U87_14540	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J3U87_14560	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
J3U87_14580	COG1858	cytochrome C peroxidase
J3U87_14600	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J3U87_14610	COG0589	response to stress
J3U87_14645	COG3278	Belongs to the heme-copper respiratory oxidase family
J3U87_14660	COG0589	response to stress
J3U87_14670	COG0745	RESPONSE REGULATOR receiver
J3U87_14675	COG2204	response regulator
J3U87_14680	COG2204	response regulator
J3U87_14685	COG1305	Transglutaminase-like
J3U87_14690	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J3U87_14700	COG0706	membrane insertase activity
J3U87_14705	COG0594	ribonuclease P activity
J3U87_14710	COG0230	Belongs to the bacterial ribosomal protein bL34 family
J3U87_14715	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J3U87_14720	COG0592	DNA-directed DNA polymerase activity
J3U87_14725	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J3U87_14730	COG0187	DNA topoisomerase II activity
J3U87_14735	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J3U87_14740	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J3U87_14745	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
J3U87_14750	COG0445	tRNA wobble uridine modification
J3U87_14755	COG1192	Involved in chromosome partitioning
J3U87_14760	COG1475	DNA binding
J3U87_14770	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J3U87_14775	COG0285	dihydrofolate synthase activity
J3U87_14780	COG0745	RESPONSE REGULATOR receiver
J3U87_14790	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
J3U87_14795	COG2884	Cell division ATP-binding protein ftsE
J3U87_14800	COG2177	Part of the ABC transporter FtsEX involved in
J3U87_14840	COG0714	Associated with various cellular activities
J3U87_14850	COG1131	(ABC) transporter
J3U87_14925	COG4650	regulator
J3U87_14930	COG1690	Belongs to the RtcB family
J3U87_14935	COG0430	RNA-3'-phosphate cyclase activity
J3U87_14945	COG3034	peptidoglycan biosynthetic process
J3U87_14950	COG0113	porphobilinogen synthase activity
J3U87_14955	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
J3U87_14975	COG0271	Belongs to the BolA IbaG family
J3U87_15010	COG2815	serine threonine protein kinase
J3U87_15010	COG0515	serine threonine protein kinase
J3U87_15025	COG1546	Belongs to the CinA family
J3U87_15025	COG1058	Belongs to the CinA family
J3U87_15035	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J3U87_15040	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J3U87_15045	COG0402	S-adenosylhomocysteine deaminase activity
J3U87_15050	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J3U87_15055	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J3U87_15065	COG1968	undecaprenyl-diphosphatase activity
J3U87_15070	COG0418	dihydroorotase activity
J3U87_15085	COG0189	ligase activity
J3U87_15090	COG2204	response regulator
J3U87_15095	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J3U87_15110	COG3428	Bacterial PH domain
J3U87_15120	COG0505	Belongs to the CarA family
J3U87_15125	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J3U87_15145	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J3U87_15155	COG0643	Histidine kinase
J3U87_15155	COG2198	Histidine kinase
J3U87_15160	COG2204	response regulator
J3U87_15165	COG4191	Histidine kinase
J3U87_15170	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J3U87_15180	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
J3U87_15190	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J3U87_15195	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J3U87_15200	COG1573	uracil-dna glycosylase
J3U87_15205	COG1196	nuclear chromosome segregation
J3U87_15215	COG0402	S-adenosylhomocysteine deaminase activity
J3U87_15230	COG0367	asparagine synthase
J3U87_15235	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_15285	COG0513	Belongs to the DEAD box helicase family
J3U87_15325	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J3U87_15330	COG0159	tryptophan synthase activity
J3U87_15335	COG0133	tryptophan synthase activity
J3U87_15345	COG0134	indole-3-glycerol-phosphate synthase activity
J3U87_15350	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
J3U87_15370	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
J3U87_15375	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3U87_15380	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J3U87_15390	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J3U87_15395	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J3U87_15400	COG1086	Polysaccharide biosynthesis protein
J3U87_15410	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J3U87_15420	COG0022	dehydrogenase e1 component
J3U87_15430	COG0784	Response regulator, receiver
J3U87_15430	COG2205	protein histidine kinase activity
J3U87_15430	COG5002	protein histidine kinase activity
J3U87_15450	COG1063	alcohol dehydrogenase
J3U87_15455	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J3U87_15460	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
J3U87_15470	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
J3U87_15475	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3U87_15495	COG1366	Belongs to the anti-sigma-factor antagonist family
J3U87_15510	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J3U87_15520	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
J3U87_15535	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
J3U87_15555	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
J3U87_15575	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J3U87_15580	COG0494	nUDIX hydrolase
J3U87_15595	COG0625	glutathione transferase activity
J3U87_15635	COG2815	serine threonine protein kinase
J3U87_15635	COG0515	serine threonine protein kinase
J3U87_15650	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J3U87_15650	COG2070	2-Nitropropane dioxygenase
J3U87_15655	COG0563	adenylate kinase activity
J3U87_15660	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J3U87_15665	COG2204	response regulator
J3U87_15670	COG5000	phosphorelay sensor kinase activity
J3U87_15720	COG1199	ATP-dependent helicase activity
J3U87_15720	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J3U87_15725	COG0058	SHG alpha-glucan phosphorylase activity
J3U87_15740	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J3U87_15765	COG2843	Capsule synthesis protein
J3U87_15775	COG0668	transmembrane transport
J3U87_15835	COG2604	Protein of unknown function DUF115
J3U87_15845	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J3U87_15850	COG0768	penicillin binding
J3U87_15860	COG0515	serine threonine protein kinase
J3U87_15860	COG2815	serine threonine protein kinase
J3U87_15870	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
J3U87_15875	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J3U87_15880	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_15890	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J3U87_15915	COG1487	ribonuclease activity
J3U87_15925	COG2096	Adenosyltransferase
J3U87_15940	COG2815	serine threonine protein kinase
J3U87_15940	COG0515	serine threonine protein kinase
J3U87_15955	COG0625	glutathione transferase activity
J3U87_15960	COG3541	Predicted nucleotidyltransferase
J3U87_15980	COG1256	bacterial-type flagellum assembly
J3U87_15980	COG4786	Flagellar basal body rod
J3U87_16005	COG1706	bacterial-type flagellum-dependent cell motility
J3U87_16020	COG0826	peptidase U32
J3U87_16035	COG1104	cysteine desulfurase activity
J3U87_16040	COG0316	Belongs to the HesB IscA family
J3U87_16045	COG1215	transferase activity, transferring glycosyl groups
J3U87_16075	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J3U87_16085	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
J3U87_16095	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J3U87_16120	COG1546	Belongs to the CinA family
J3U87_16120	COG1058	Belongs to the CinA family
J3U87_16130	COG1301	dicarboxylic acid transport
J3U87_16135	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J3U87_16145	COG0437	4 iron, 4 sulfur cluster binding
J3U87_16180	COG2267	carboxylic ester hydrolase activity
J3U87_16190	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J3U87_16210	COG2205	protein histidine kinase activity
J3U87_16210	COG3292	Two component regulator propeller
J3U87_16210	COG2205	protein histidine kinase activity
J3U87_16210	COG0745	RESPONSE REGULATOR receiver
J3U87_16210	COG3292	Two component regulator propeller
J3U87_16210	COG0745	RESPONSE REGULATOR receiver
J3U87_16220	COG2197	response regulator
J3U87_16260	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J3U87_16265	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
J3U87_16290	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J3U87_16305	COG2205	protein histidine kinase activity
J3U87_16350	COG0515	serine threonine protein kinase
J3U87_16385	COG1124	(ABC) transporter
J3U87_16420	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J3U87_16425	COG0009	L-threonylcarbamoyladenylate synthase
J3U87_16440	COG0745	RESPONSE REGULATOR receiver
J3U87_16445	COG2205	protein histidine kinase activity
J3U87_16450	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J3U87_16470	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J3U87_16475	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_16485	COG1629	transport
J3U87_16485	COG4206	TonB-dependent receptor
J3U87_16495	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J3U87_16505	COG0194	GDP metabolic process
J3U87_16510	COG1561	YicC-like family, N-terminal region
J3U87_16515	COG1132	(ABC) transporter
J3U87_16535	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J3U87_16545	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J3U87_16550	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J3U87_16565	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J3U87_16575	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_16585	COG0424	maF-like protein
J3U87_16600	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J3U87_16605	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
J3U87_16610	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J3U87_16615	COG1643	Atp-dependent helicase
J3U87_16620	COG2226	methyltransferase
J3U87_16635	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J3U87_16640	COG0181	hydroxymethylbilane synthase activity
J3U87_16660	COG1981	membrane
J3U87_16665	COG0357	Ribosomal RNA small subunit methyltransferase G
J3U87_16670	COG0793	Belongs to the peptidase S41A family
J3U87_16705	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J3U87_16715	COG2205	protein histidine kinase activity
J3U87_16720	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J3U87_16755	COG3852	Histidine kinase
J3U87_16760	COG3706	GGDEF domain
J3U87_16770	COG0564	pseudouridine synthase activity
J3U87_16775	COG2937	Belongs to the GPAT DAPAT family
J3U87_16780	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J3U87_16780	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J3U87_16785	COG0196	riboflavin kinase activity
J3U87_16790	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J3U87_16805	COG3706	GGDEF domain
J3U87_16810	COG0571	ribonuclease III activity
J3U87_16815	COG1187	pseudouridine synthase activity
J3U87_16820	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
J3U87_16825	COG0792	nuclease activity
J3U87_16830	COG0515	serine threonine protein kinase
J3U87_16830	COG2815	serine threonine protein kinase
J3U87_16835	COG3204	pilus organization
J3U87_16845	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J3U87_16870	COG1131	(ABC) transporter
J3U87_16880	COG0442	prolyl-tRNA aminoacylation
J3U87_16890	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
J3U87_16900	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J3U87_16905	COG2226	methyltransferase
J3U87_16920	COG0514	ATP-dependent DNA helicase (RecQ)
J3U87_16950	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J3U87_16950	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J3U87_16990	COG2165	general secretion pathway protein
J3U87_17025	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J3U87_17030	COG1459	type II secretion system
J3U87_17035	COG0438	transferase activity, transferring glycosyl groups
J3U87_17115	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J3U87_17140	COG4974	Belongs to the 'phage' integrase family
J3U87_17280	COG2131	deaminase
J3U87_17430	COG3586	endonuclease activity
J3U87_17450	COG2226	methyltransferase
J3U87_17510	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_17535	COG0789	Transcriptional regulator
J3U87_17540	COG0500	methyltransferase
J3U87_17555	COG0644	oxidoreductase
J3U87_17590	COG3311	Transcriptional regulator
J3U87_17600	COG2319	Wd-40 repeat
J3U87_17600	COG4249	Peptidase C14 caspase catalytic subunit p20
J3U87_17615	COG4456	Virulence-associated protein
J3U87_17630	COG4691	Plasmid stability protein
J3U87_17650	COG0861	Integral membrane protein TerC family
J3U87_17670	COG2154	pterin-4-alpha-carbinolamine dehydratase
J3U87_17690	COG1752	Esterase of the alpha-beta hydrolase superfamily
J3U87_17700	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J3U87_17705	COG4191	Histidine kinase
J3U87_17710	COG2204	response regulator
J3U87_17735	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J3U87_17745	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J3U87_17750	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J3U87_17755	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J3U87_17760	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
J3U87_17770	COG1366	Belongs to the anti-sigma-factor antagonist family
J3U87_17775	COG0632	four-way junction helicase activity
J3U87_17780	COG2255	four-way junction helicase activity
J3U87_17835	COG0018	arginyl-trna synthetase
J3U87_17855	COG0463	Glycosyl transferase, family 2
J3U87_17880	COG3852	Histidine kinase
J3U87_17885	COG2204	response regulator
J3U87_17925	COG1435	thymidine kinase activity
J3U87_17930	COG0439	Biotin carboxylase
J3U87_17935	COG0511	ligase activity, forming carbon-carbon bonds
J3U87_17945	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J3U87_17960	COG0483	inositol monophosphate 1-phosphatase activity
J3U87_17965	COG2003	Belongs to the UPF0758 family
J3U87_17990	COG2226	methyltransferase
J3U87_18010	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J3U87_18015	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J3U87_18015	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_18040	COG1238	metal cluster binding
J3U87_18055	COG1595	DNA-templated transcription, initiation
J3U87_18090	COG1960	acyl-CoA dehydrogenase activity
J3U87_18095	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
J3U87_18100	COG2205	protein histidine kinase activity
J3U87_18105	COG0584	glycerophosphoryl diester phosphodiesterase
J3U87_18110	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J3U87_18115	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J3U87_18125	COG1752	Esterase of the alpha-beta hydrolase superfamily
J3U87_18155	COG0489	protein tyrosine kinase activity
J3U87_18160	COG0489	protein tyrosine kinase activity
J3U87_18165	COG2201	protein-glutamate methylesterase activity
J3U87_18175	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
J3U87_18180	COG4206	TonB-dependent receptor
J3U87_18185	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J3U87_18200	COG1703	isobutyryl-CoA mutase activity
J3U87_18200	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
J3U87_18200	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
J3U87_18210	COG4771	TonB-dependent receptor
J3U87_18260	COG3118	belongs to the thioredoxin family
J3U87_18265	COG0564	pseudouridine synthase activity
J3U87_18285	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J3U87_18290	COG0515	serine threonine protein kinase
J3U87_18290	COG2815	serine threonine protein kinase
J3U87_18315	COG3485	protocatechuate 3,4-dioxygenase
J3U87_18350	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3U87_18365	COG1012	belongs to the aldehyde dehydrogenase family
J3U87_18370	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J3U87_18385	COG0745	RESPONSE REGULATOR receiver
J3U87_18425	COG1040	competence protein
J3U87_18435	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
J3U87_18440	COG0602	queuosine metabolic process
J3U87_18475	COG0149	triose-phosphate isomerase activity
J3U87_18490	COG1085	galactose-1-phosphate uridylyltransferase
J3U87_18495	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J3U87_18500	COG3250	beta-galactosidase activity
J3U87_18535	COG1902	pentaerythritol trinitrate reductase activity
J3U87_18535	COG0446	pyridine nucleotide-disulphide oxidoreductase
J3U87_18540	COG0101	tRNA pseudouridine synthase activity
J3U87_18565	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J3U87_18575	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J3U87_18580	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J3U87_18590	COG0745	RESPONSE REGULATOR receiver
J3U87_18600	COG0138	bifunctional purine biosynthesis protein purh
J3U87_18605	COG3971	2-oxopent-4-enoate hydratase activity
J3U87_18610	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
J3U87_18635	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J3U87_18685	COG1842	Phage shock protein A
J3U87_18690	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J3U87_18695	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J3U87_18705	COG0835	chemotaxis
J3U87_18710	COG0643	Histidine kinase
J3U87_18710	COG2198	Histidine kinase
J3U87_18715	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J3U87_18725	COG1490	D-aminoacyl-tRNA deacylase activity
J3U87_18735	COG2239	Acts as a magnesium transporter
J3U87_18755	COG0752	glycyl-tRNA synthetase alpha subunit
J3U87_18760	COG0751	glycine-tRNA ligase activity
J3U87_18765	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J3U87_18765	COG0574	Belongs to the PEP-utilizing enzyme family
J3U87_18785	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J3U87_18795	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
J3U87_18795	COG0662	Cupin 2, conserved barrel domain protein
J3U87_18800	COG1940	carbohydrate kinase activity
J3U87_18805	COG2205	protein histidine kinase activity
J3U87_18805	COG3292	Two component regulator propeller
J3U87_18805	COG0745	RESPONSE REGULATOR receiver
J3U87_18810	COG2197	response regulator
J3U87_18820	COG3537	Alpha-1,2-mannosidase
J3U87_18835	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J3U87_18850	COG2815	serine threonine protein kinase
J3U87_18850	COG0515	serine threonine protein kinase
J3U87_18860	COG0318	PFAM AMP-dependent synthetase and ligase
J3U87_18875	COG2204	response regulator
J3U87_18880	COG4251	negative regulation of phosphorylation
J3U87_18895	COG1950	PFAM Membrane protein of
J3U87_18905	COG0489	protein tyrosine kinase activity
J3U87_18910	COG0489	protein tyrosine kinase activity
J3U87_18915	COG2151	metal-sulfur cluster biosynthetic enzyme
J3U87_18920	COG0822	iron-sulfur transferase activity
J3U87_18925	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J3U87_18930	COG0719	Fe-S assembly protein
J3U87_18935	COG0396	ATPase activity
J3U87_18940	COG0719	Fe-S assembly protein
J3U87_18965	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
J3U87_18980	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
J3U87_18995	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
J3U87_19000	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J3U87_19050	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
J3U87_19060	COG2226	methyltransferase
J3U87_19080	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J3U87_19085	COG0686	Belongs to the AlaDH PNT family
J3U87_19125	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J3U87_19130	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
J3U87_19135	COG0066	3-isopropylmalate dehydratase activity
J3U87_19140	COG0473	3-isopropylmalate dehydrogenase activity
J3U87_19145	COG0823	Involved in the tonB-independent uptake of proteins
J3U87_19145	COG1506	peptidase
J3U87_19150	COG0776	regulation of translation
J3U87_19190	COG0456	acetyltransferase
J3U87_19190	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
J3U87_19195	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
J3U87_19200	COG0793	Belongs to the peptidase S41A family
J3U87_19200	COG4946	Tricorn protease homolog
J3U87_19215	COG2814	Major facilitator Superfamily
J3U87_19225	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
J3U87_19275	COG0714	Associated with various cellular activities
J3U87_19290	COG1960	acyl-CoA dehydrogenase activity
J3U87_19295	COG0237	dephospho-CoA kinase activity
J3U87_19320	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J3U87_19330	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J3U87_19355	COG4191	Histidine kinase
J3U87_19360	COG0402	S-adenosylhomocysteine deaminase activity
J3U87_19370	COG0010	Belongs to the arginase family
J3U87_19375	COG1393	Belongs to the ArsC family
J3U87_19380	COG1100	Small GTP-binding protein
J3U87_19390	COG1053	succinate dehydrogenase
J3U87_19395	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J3U87_19400	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J3U87_19460	COG3710	Transcriptional regulator
J3U87_19475	COG1196	nuclear chromosome segregation
J3U87_19475	COG3264	Mechanosensitive ion channel
J3U87_19495	COG0768	penicillin binding
J3U87_19500	COG0772	Belongs to the SEDS family
J3U87_19520	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J3U87_19525	COG0017	Asparaginyl-tRNA synthetase
J3U87_19540	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J3U87_19565	COG4181	ATPase activity
J3U87_19570	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
J3U87_19585	COG0400	carboxylic ester hydrolase activity
J3U87_19595	COG0784	Response regulator, receiver
J3U87_19600	COG2202	Pas domain
J3U87_19600	COG2205	protein histidine kinase activity
J3U87_19605	COG1842	Phage shock protein A
J3U87_19615	COG0484	heat shock protein binding
J3U87_19620	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
J3U87_19640	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
J3U87_19680	COG3483	tryptophan 2,3-dioxygenase activity
J3U87_19695	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J3U87_19700	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J3U87_19715	COG2198	Histidine kinase
J3U87_19715	COG0784	Response regulator, receiver
J3U87_19715	COG0643	Histidine kinase
J3U87_19720	COG0835	chemotaxis
J3U87_19725	COG2201	protein-glutamate methylesterase activity
J3U87_19735	COG5002	protein histidine kinase activity
J3U87_19750	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J3U87_19770	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
J3U87_19780	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
J3U87_19785	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J3U87_19790	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
J3U87_19795	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J3U87_19800	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J3U87_19800	COG0072	phenylalanine-tRNA ligase activity
J3U87_19820	COG1692	metallophosphoesterase
J3U87_19825	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
J3U87_19830	COG4399	Belongs to the UPF0754 family
J3U87_19860	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
J3U87_19865	COG0049	tRNA binding
J3U87_19870	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J3U87_19875	COG0051	transcription antitermination factor activity, RNA binding
J3U87_19880	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J3U87_19885	COG0088	Forms part of the polypeptide exit tunnel
J3U87_19890	COG0089	rRNA binding
J3U87_19895	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J3U87_19900	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J3U87_19905	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J3U87_19910	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J3U87_19915	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
J3U87_19920	COG0255	Belongs to the universal ribosomal protein uL29 family
J3U87_19925	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J3U87_19930	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
J3U87_19935	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
J3U87_19940	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
J3U87_19945	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J3U87_19950	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J3U87_19955	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
J3U87_19960	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J3U87_19980	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J3U87_19990	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J3U87_19995	COG0202	RNA polymerase activity
J3U87_20000	COG0203	ribosomal protein L17
J3U87_20005	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J3U87_20005	COG0519	Catalyzes the synthesis of GMP from XMP
J3U87_20010	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
J3U87_20025	COG1960	acyl-CoA dehydrogenase activity
J3U87_20045	COG0252	asparaginase activity
J3U87_20080	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
J3U87_20090	COG4607	ABC-type enterochelin transport system periplasmic component
J3U87_20095	COG1120	ATPase activity
J3U87_20130	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J3U87_20140	COG0151	Belongs to the GarS family
J3U87_20175	COG0784	Response regulator, receiver
J3U87_20175	COG2205	protein histidine kinase activity
J3U87_20180	COG0135	phosphoribosylanthranilate isomerase activity
J3U87_20195	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J3U87_20210	COG0415	Belongs to the DNA photolyase family
J3U87_20220	COG0789	Transcriptional regulator
J3U87_20235	COG0077	Prephenate dehydratase
J3U87_20235	COG1605	Chorismate mutase
J3U87_20240	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J3U87_20245	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J3U87_20245	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J3U87_20250	COG0314	molybdopterin synthase activity
J3U87_20260	COG1288	antiporter activity
J3U87_20275	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J3U87_20300	COG0628	permease
J3U87_20310	COG0612	Peptidase, M16
J3U87_20315	COG0756	dUTP diphosphatase activity
J3U87_20325	COG0820	rRNA (adenine-C2-)-methyltransferase activity
J3U87_20335	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J3U87_20340	COG0776	regulation of translation
J3U87_20345	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J3U87_20355	COG2204	response regulator
J3U87_20380	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
J3U87_20380	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J3U87_20385	COG3118	belongs to the thioredoxin family
J3U87_20390	COG0084	hydrolase, TatD family'
J3U87_20395	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J3U87_20430	COG0492	ferredoxin-NADP+ reductase activity
J3U87_20435	COG1678	Uncharacterized ACR, COG1678
J3U87_20455	COG4191	Histidine kinase
J3U87_20470	COG0745	RESPONSE REGULATOR receiver
J3U87_20475	COG2205	protein histidine kinase activity
J3U87_20480	COG1538	Outer membrane efflux protein
J3U87_20485	COG1566	PFAM secretion protein HlyD family protein
J3U87_20495	COG0702	epimerase
J3U87_20510	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J3U87_20525	COG1131	(ABC) transporter
J3U87_20535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J3U87_20570	COG3321	synthase
J3U87_20570	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_20600	COG0589	response to stress
J3U87_20635	COG0009	L-threonylcarbamoyladenylate synthase
J3U87_20640	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J3U87_20710	COG0788	formyltetrahydrofolate deformylase activity
J3U87_20715	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J3U87_20725	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J3U87_20755	COG0300	oxidoreductase activity
J3U87_20755	COG0318	PFAM AMP-dependent synthetase and ligase
J3U87_20755	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_20755	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_20755	COG3321	synthase
J3U87_20765	COG0247	lactate metabolic process
J3U87_20765	COG0277	FAD linked oxidase domain protein
J3U87_20775	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J3U87_20780	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
J3U87_20800	COG1696	Membrane protein involved in D-alanine export
J3U87_20810	COG1132	(ABC) transporter
J3U87_20815	COG1132	(ABC) transporter
J3U87_20835	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
J3U87_20840	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J3U87_20855	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J3U87_20860	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J3U87_20865	COG0772	Belongs to the SEDS family
J3U87_20870	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J3U87_20875	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J3U87_20880	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J3U87_20900	COG0275	rRNA processing
J3U87_20905	COG2001	Belongs to the MraZ family
J3U87_20910	COG2235	arginine
J3U87_20960	COG2207	Transcriptional regulator
J3U87_20960	COG4753	response regulator
J3U87_20965	COG2340	Cysteine-rich secretory protein family
J3U87_20970	COG0673	inositol 2-dehydrogenase activity
J3U87_21000	COG1612	heme a metabolic process
J3U87_21020	COG0556	nucleotide-excision repair
J3U87_21030	COG1166	arginine decarboxylase activity
J3U87_21040	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J3U87_21045	COG5002	protein histidine kinase activity
J3U87_21045	COG2205	protein histidine kinase activity
J3U87_21045	COG0784	Response regulator, receiver
J3U87_21060	COG2226	methyltransferase
J3U87_21085	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J3U87_21105	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J3U87_21130	COG0301	tRNA thio-modification
J3U87_21140	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J3U87_21145	COG0569	domain protein
J3U87_21150	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
J3U87_21155	COG0156	8-amino-7-oxononanoate synthase activity
J3U87_21180	COG0840	transmembrane signaling receptor activity
J3U87_21190	COG3104	oligopeptide transport
J3U87_21195	COG2814	Major facilitator Superfamily
J3U87_21210	COG0167	dihydroorotate dehydrogenase activity
J3U87_21215	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
J3U87_21245	COG0521	Mo-molybdopterin cofactor biosynthetic process
J3U87_21250	COG2249	NAD(P)H dehydrogenase (quinone) activity
J3U87_21255	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
J3U87_21290	COG1530	ribonuclease E activity
J3U87_21300	COG0471	metal ion transport
J3U87_21300	COG3273	potassium ion transport
J3U87_21330	COG0500	methyltransferase
J3U87_21340	COG4106	trans-aconitate 2-methyltransferase activity
J3U87_21390	COG1115	amino acid carrier protein
J3U87_21395	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J3U87_21400	COG0789	Transcriptional regulator
J3U87_21405	COG0484	heat shock protein binding
J3U87_21410	COG0443	Heat shock 70 kDa protein
J3U87_21420	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J3U87_21425	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
J3U87_21430	COG1917	Cupin 2, conserved barrel domain protein
J3U87_21430	COG4977	sequence-specific DNA binding
J3U87_21440	COG1794	racemase activity, acting on amino acids and derivatives
J3U87_21460	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J3U87_21460	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J3U87_21485	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J3U87_21500	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J3U87_21505	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
J3U87_21525	COG2815	serine threonine protein kinase
J3U87_21525	COG0515	serine threonine protein kinase
J3U87_21540	COG1404	Belongs to the peptidase S8 family
J3U87_21560	COG2873	o-acetylhomoserine
J3U87_21570	COG2815	serine threonine protein kinase
J3U87_21570	COG0515	serine threonine protein kinase
J3U87_21575	COG2205	protein histidine kinase activity
J3U87_21575	COG0784	Response regulator, receiver
J3U87_21580	COG1215	transferase activity, transferring glycosyl groups
J3U87_21595	COG0583	DNA-binding transcription factor activity
J3U87_21600	COG0443	Heat shock 70 kDa protein
J3U87_21625	COG3956	TIGRFAM MazG family protein
J3U87_21640	COG2205	protein histidine kinase activity
J3U87_21640	COG2198	Histidine kinase
J3U87_21640	COG0784	Response regulator, receiver
J3U87_21655	COG0484	heat shock protein binding
J3U87_21665	COG0443	Heat shock 70 kDa protein
J3U87_21715	COG0024	Methionine aminopeptidase
J3U87_21770	COG1595	DNA-templated transcription, initiation
J3U87_21785	COG1410	methionine synthase
J3U87_21785	COG0646	methionine synthase
J3U87_21790	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J3U87_21815	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J3U87_21835	COG1388	LysM domain
J3U87_21835	COG1705	Flagellar rod assembly protein muramidase FlgJ
J3U87_21845	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J3U87_21855	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J3U87_21865	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J3U87_21865	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J3U87_21880	COG2861	carbohydrate metabolic process
J3U87_21885	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
J3U87_21895	COG0494	nUDIX hydrolase
J3U87_21905	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J3U87_21920	COG0515	serine threonine protein kinase
J3U87_21920	COG2815	serine threonine protein kinase
J3U87_21930	COG1619	proteins homologs of microcin C7 resistance protein MccF
J3U87_21940	COG0515	serine threonine protein kinase
J3U87_21940	COG2815	serine threonine protein kinase
J3U87_21975	COG2433	Pfam Transposase IS66
J3U87_21990	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J3U87_21995	COG1331	Highly conserved protein containing a thioredoxin domain
J3U87_22010	COG3321	synthase
J3U87_22010	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_22010	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_22010	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_22010	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_22025	COG3292	Two component regulator propeller
J3U87_22025	COG0745	RESPONSE REGULATOR receiver
J3U87_22025	COG2205	protein histidine kinase activity
J3U87_22075	COG3436	PFAM IS66 Orf2 family protein
J3U87_22135	COG2433	Pfam Transposase IS66
J3U87_22165	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_22170	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_22175	COG0515	serine threonine protein kinase
J3U87_22175	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_22250	COG3047	cAMP biosynthetic process
J3U87_22255	COG2205	protein histidine kinase activity
J3U87_22255	COG2198	Histidine kinase
J3U87_22255	COG0784	Response regulator, receiver
J3U87_22265	COG1136	(ABC) transporter
J3U87_22265	COG0577	efflux transmembrane transporter activity
J3U87_22270	COG1136	(ABC) transporter
J3U87_22270	COG0577	efflux transmembrane transporter activity
J3U87_22275	COG1136	(ABC) transporter
J3U87_22340	COG1136	(ABC) transporter
J3U87_22345	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3U87_22355	COG0538	isocitrate dehydrogenase activity
J3U87_22375	COG0784	Response regulator, receiver
J3U87_22375	COG2205	protein histidine kinase activity
J3U87_22375	COG5002	protein histidine kinase activity
J3U87_22420	COG3275	phosphorelay sensor kinase activity
J3U87_22435	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_22495	COG3344	reverse transcriptase
J3U87_22605	COG3227	Zinc metalloprotease (Elastase)
J3U87_22625	COG1045	serine acetyltransferase
J3U87_22645	COG0318	PFAM AMP-dependent synthetase and ligase
J3U87_22675	COG2818	Glycosylase
J3U87_22700	COG1595	DNA-templated transcription, initiation
J3U87_22710	COG1505	serine-type exopeptidase activity
J3U87_22775	COG0745	RESPONSE REGULATOR receiver
J3U87_22780	COG4251	negative regulation of phosphorylation
J3U87_22825	COG0367	asparagine synthase
J3U87_22840	COG5002	protein histidine kinase activity
J3U87_22840	COG0784	Response regulator, receiver
J3U87_22840	COG2198	Histidine kinase
J3U87_22850	COG1858	cytochrome C peroxidase
J3U87_22865	COG0840	transmembrane signaling receptor activity
J3U87_22870	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3U87_22880	COG1538	Outer membrane efflux protein
J3U87_22885	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J3U87_22930	COG1846	Transcriptional regulator
J3U87_22935	COG1764	response to oxidative stress
J3U87_22945	COG0840	transmembrane signaling receptor activity
J3U87_23025	COG4932	domain protein
J3U87_23030	COG3005	denitrification pathway
J3U87_23035	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
J3U87_23055	COG3275	phosphorelay sensor kinase activity
J3U87_23065	COG4774	siderophore transport
J3U87_23085	COG3710	Transcriptional regulator
J3U87_23090	COG1228	amidohydrolase
J3U87_23100	COG4206	TonB-dependent receptor
J3U87_23135	COG0300	oxidoreductase activity
J3U87_23150	COG2356	endonuclease I
J3U87_23170	COG0489	protein tyrosine kinase activity
J3U87_23170	COG2151	metal-sulfur cluster biosynthetic enzyme
J3U87_23210	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J3U87_23215	COG1845	cytochrome c oxidase, subunit III
J3U87_23235	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J3U87_23240	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
J3U87_23245	COG0535	radical SAM domain protein
J3U87_23275	COG1309	transcriptional regulator
J3U87_23300	COG1522	sequence-specific DNA binding
J3U87_23310	COG0424	maF-like protein
J3U87_23315	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J3U87_23320	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J3U87_23330	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
J3U87_23335	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J3U87_23360	COG3710	Transcriptional regulator
J3U87_23365	COG1404	Belongs to the peptidase S8 family
J3U87_23385	COG0688	phosphatidylethanolamine metabolic process
J3U87_23445	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J3U87_23450	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
J3U87_23465	COG0745	RESPONSE REGULATOR receiver
J3U87_23525	COG2433	Pfam Transposase IS66
J3U87_23590	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_23610	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_23930	COG0529	Catalyzes the synthesis of activated sulfate
J3U87_23935	COG0277	FAD linked oxidase domain protein
J3U87_23940	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3U87_23945	COG2205	protein histidine kinase activity
J3U87_23945	COG0784	Response regulator, receiver
J3U87_23950	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_23965	COG3256	nitric oxide reductase
J3U87_23990	COG0037	tRNA processing
J3U87_23995	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J3U87_24035	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J3U87_24055	COG3279	Response regulator of the LytR AlgR family
J3U87_24085	COG4941	Belongs to the sigma-70 factor family
J3U87_24090	COG3795	YCII-related domain
J3U87_24100	COG2358	TRAP transporter, solute receptor (TAXI family
J3U87_24105	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J3U87_24140	COG0515	serine threonine protein kinase
J3U87_24145	COG2204	response regulator
J3U87_24155	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J3U87_24170	COG3387	PFAM Glycoside hydrolase 15-related
J3U87_24175	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3U87_24200	COG0151	Belongs to the GarS family
J3U87_24205	COG0183	Belongs to the thiolase family
J3U87_24210	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J3U87_24220	COG3885	ferrous iron binding
J3U87_24220	COG2078	PFAM AMMECR1 domain protein
J3U87_24265	COG4585	Histidine kinase
J3U87_24275	COG2197	response regulator
J3U87_24285	COG0659	secondary active sulfate transmembrane transporter activity
J3U87_24355	COG0515	serine threonine protein kinase
J3U87_24355	COG2815	serine threonine protein kinase
J3U87_24360	COG5002	protein histidine kinase activity
J3U87_24365	COG0745	RESPONSE REGULATOR receiver
J3U87_24385	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3U87_24405	COG1022	Amp-dependent synthetase and ligase
J3U87_24410	COG0534	Mate efflux family protein
J3U87_24435	COG0124	histidyl-tRNA synthetase
J3U87_24440	COG1136	(ABC) transporter
J3U87_24455	COG3012	SEC-C Motif Domain Protein
J3U87_24485	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3U87_24490	COG0076	glutamate decarboxylase activity
J3U87_24515	COG3597	protein domain associated with
J3U87_24525	COG3437	response regulator, receiver
J3U87_24535	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J3U87_24540	COG2201	protein-glutamate methylesterase activity
J3U87_24545	COG0835	chemotaxis
J3U87_24555	COG0643	Histidine kinase
J3U87_24555	COG0784	Response regulator, receiver
J3U87_24555	COG2198	Histidine kinase
J3U87_24610	COG5002	protein histidine kinase activity
J3U87_24615	COG0745	RESPONSE REGULATOR receiver
J3U87_24620	COG2207	Transcriptional regulator
J3U87_24695	COG2311	Membrane
J3U87_24700	COG1725	Transcriptional regulator
J3U87_24705	COG1131	(ABC) transporter
J3U87_24720	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_24760	COG0318	PFAM AMP-dependent synthetase and ligase
J3U87_24770	COG4615	Cyclic peptide transporter
J3U87_24785	COG4191	Histidine kinase
J3U87_24815	COG0745	RESPONSE REGULATOR receiver
J3U87_24825	COG2319	Wd-40 repeat
J3U87_24825	COG4249	Peptidase C14 caspase catalytic subunit p20
J3U87_24835	COG1858	cytochrome C peroxidase
J3U87_24845	COG0626	cystathionine gamma-synthase activity
J3U87_24870	COG2207	Transcriptional regulator
J3U87_24880	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
J3U87_24895	COG1335	isochorismatase
J3U87_24900	COG0583	DNA-binding transcription factor activity
J3U87_24935	COG2205	protein histidine kinase activity
J3U87_24940	COG0745	RESPONSE REGULATOR receiver
J3U87_24960	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_24975	COG3425	synthase
J3U87_24980	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_24985	COG0515	serine threonine protein kinase
J3U87_24985	COG2815	serine threonine protein kinase
J3U87_25030	COG3227	Zinc metalloprotease (Elastase)
J3U87_25030	COG3227	Zinc metalloprotease (Elastase)
J3U87_25035	COG3279	Response regulator of the LytR AlgR family
J3U87_25040	COG3275	phosphorelay sensor kinase activity
J3U87_25060	COG0405	Gamma-glutamyltransferase
J3U87_25080	COG0745	RESPONSE REGULATOR receiver
J3U87_25080	COG3292	Two component regulator propeller
J3U87_25080	COG2205	protein histidine kinase activity
J3U87_25090	COG0515	serine threonine protein kinase
J3U87_25090	COG2815	serine threonine protein kinase
J3U87_25130	COG1595	DNA-templated transcription, initiation
J3U87_25135	COG0346	lactoylglutathione lyase activity
J3U87_25165	COG0515	serine threonine protein kinase
J3U87_25165	COG2815	serine threonine protein kinase
J3U87_25200	COG2198	Histidine kinase
J3U87_25200	COG0784	Response regulator, receiver
J3U87_25200	COG5002	protein histidine kinase activity
J3U87_25205	COG0515	serine threonine protein kinase
J3U87_25205	COG2815	serine threonine protein kinase
J3U87_25210	COG2815	serine threonine protein kinase
J3U87_25210	COG0515	serine threonine protein kinase
J3U87_25225	COG3209	COG3209 Rhs family protein
J3U87_25235	COG3344	reverse transcriptase
J3U87_25250	COG0583	DNA-binding transcription factor activity
J3U87_25300	COG4615	Cyclic peptide transporter
J3U87_25320	COG3185	4-Hydroxyphenylpyruvate dioxygenase
J3U87_25345	COG4774	siderophore transport
J3U87_25345	COG1629	transport
J3U87_25380	COG2815	serine threonine protein kinase
J3U87_25380	COG0515	serine threonine protein kinase
J3U87_25425	COG2162	N-hydroxyarylamine O-acetyltransferase activity
J3U87_25445	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J3U87_25450	COG0435	Glutathione S-transferase
J3U87_25465	COG3361	conserved protein (COG2071)
J3U87_25475	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J3U87_25495	COG5000	phosphorelay sensor kinase activity
J3U87_25510	COG0840	transmembrane signaling receptor activity
J3U87_25520	COG1192	Involved in chromosome partitioning
J3U87_25540	COG0515	serine threonine protein kinase
J3U87_25540	COG2815	serine threonine protein kinase
J3U87_25565	COG4771	TonB-dependent receptor
J3U87_25600	COG2084	Dehydrogenase
J3U87_25605	COG0583	DNA-binding transcription factor activity
J3U87_25635	COG0515	serine threonine protein kinase
J3U87_25665	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J3U87_25690	COG1595	DNA-templated transcription, initiation
J3U87_25700	COG3708	Transcriptional regulator
J3U87_25700	COG2207	Transcriptional regulator
J3U87_25780	COG2207	Transcriptional regulator
J3U87_25795	COG4771	TonB-dependent receptor
J3U87_25870	COG1858	cytochrome C peroxidase
J3U87_25920	COG0300	oxidoreductase activity
J3U87_25935	COG0251	oxidation-reduction process
J3U87_25950	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J3U87_25975	COG2815	serine threonine protein kinase
J3U87_25975	COG0515	serine threonine protein kinase
J3U87_25985	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J3U87_25990	COG5297	Belongs to the glycosyl hydrolase family 6
J3U87_25990	COG4733	cellulase activity
J3U87_26005	COG2226	methyltransferase
J3U87_26010	COG1280	lysine exporter protein (LysE YggA)
J3U87_26060	COG1335	isochorismatase
J3U87_26065	COG1741	Belongs to the pirin family
J3U87_26080	COG2113	Glycine betaine
J3U87_26085	COG5002	protein histidine kinase activity
J3U87_26105	COG3706	GGDEF domain
J3U87_26115	COG2205	protein histidine kinase activity
J3U87_26115	COG0784	Response regulator, receiver
J3U87_26130	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J3U87_26135	COG1283	sodium-dependent phosphate transmembrane transporter activity
J3U87_26145	COG1295	ribonuclease BN
J3U87_26160	COG2304	oxidoreductase activity
J3U87_26225	COG0745	RESPONSE REGULATOR receiver
J3U87_26230	COG4191	Histidine kinase
J3U87_26235	COG2267	carboxylic ester hydrolase activity
J3U87_26255	COG0577	efflux transmembrane transporter activity
J3U87_26255	COG1136	(ABC) transporter
J3U87_26260	COG0577	efflux transmembrane transporter activity
J3U87_26260	COG1136	(ABC) transporter
J3U87_26270	COG4191	Histidine kinase
J3U87_26275	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
J3U87_26280	COG0583	DNA-binding transcription factor activity
J3U87_26285	COG1024	Enoyl-CoA hydratase
J3U87_26295	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_26300	COG3292	Two component regulator propeller
J3U87_26300	COG2205	protein histidine kinase activity
J3U87_26300	COG0745	RESPONSE REGULATOR receiver
J3U87_26310	COG4251	negative regulation of phosphorylation
J3U87_26320	COG0484	heat shock protein binding
J3U87_26330	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
J3U87_26330	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J3U87_26335	COG0805	protein transport
J3U87_26340	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J3U87_26365	COG2207	Transcriptional regulator
J3U87_26380	COG3292	Two component regulator propeller
J3U87_26380	COG0745	RESPONSE REGULATOR receiver
J3U87_26380	COG2205	protein histidine kinase activity
J3U87_26400	COG2815	serine threonine protein kinase
J3U87_26400	COG0515	serine threonine protein kinase
J3U87_26405	COG1234	tRNA 3'-trailer cleavage
J3U87_26415	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
J3U87_26425	COG0668	transmembrane transport
J3U87_26445	COG0848	biopolymer transport protein
J3U87_26475	COG0596	Alpha beta hydrolase
J3U87_26485	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
J3U87_26515	COG0500	methyltransferase
J3U87_26535	COG3119	arylsulfatase activity
J3U87_26545	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
J3U87_26550	COG1720	tRNA m6t6A37 methyltransferase activity
J3U87_26585	COG2204	response regulator
J3U87_26610	COG2133	pyrroloquinoline quinone binding
J3U87_26615	COG1921	L-seryl-tRNASec selenium transferase activity
J3U87_26630	COG0828	Belongs to the bacterial ribosomal protein bS21 family
J3U87_26650	COG2205	protein histidine kinase activity
J3U87_26660	COG2204	response regulator
J3U87_26710	COG2070	2-Nitropropane dioxygenase
J3U87_26710	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J3U87_26730	COG2815	serine threonine protein kinase
J3U87_26730	COG0515	serine threonine protein kinase
J3U87_26745	COG4912	Dna alkylation repair
J3U87_26760	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J3U87_26765	COG4326	sporulation control protein
J3U87_26770	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
J3U87_26795	COG0791	NLP P60 protein
J3U87_26795	COG1388	LysM domain
J3U87_26825	COG2205	protein histidine kinase activity
J3U87_26830	COG0745	RESPONSE REGULATOR receiver
J3U87_26865	COG0515	serine threonine protein kinase
J3U87_26865	COG2815	serine threonine protein kinase
J3U87_26895	COG2205	protein histidine kinase activity
J3U87_26895	COG0784	Response regulator, receiver
J3U87_26905	COG1404	Belongs to the peptidase S8 family
J3U87_26915	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J3U87_26925	COG0793	Belongs to the peptidase S41A family
J3U87_26935	COG1309	transcriptional regulator
J3U87_26940	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J3U87_26950	COG2205	protein histidine kinase activity
J3U87_26950	COG4999	Histidine kinase
J3U87_26950	COG3850	Histidine kinase
J3U87_26950	COG3437	response regulator, receiver
J3U87_26955	COG0784	Response regulator, receiver
J3U87_26955	COG2205	protein histidine kinase activity
J3U87_26955	COG5002	protein histidine kinase activity
J3U87_26970	COG0300	oxidoreductase activity
J3U87_26990	COG3321	synthase
J3U87_26995	COG0823	Involved in the tonB-independent uptake of proteins
J3U87_26995	COG1506	peptidase
J3U87_27000	COG0339	signal peptide processing
J3U87_27010	COG1475	DNA binding
J3U87_27015	COG1192	Involved in chromosome partitioning
J3U87_27020	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J3U87_27035	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J3U87_27050	COG1473	amidohydrolase
J3U87_27060	COG4615	Cyclic peptide transporter
J3U87_27085	COG1070	Carbohydrate kinase
J3U87_27090	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J3U87_27095	COG0277	FAD linked oxidase domain protein
J3U87_27100	COG2186	Transcriptional regulator
J3U87_27105	COG5002	protein histidine kinase activity
J3U87_27105	COG0784	Response regulator, receiver
J3U87_27105	COG2205	protein histidine kinase activity
J3U87_27120	COG5001	Diguanylate cyclase
J3U87_27120	COG2203	Gaf domain
J3U87_27120	COG3706	GGDEF domain
J3U87_27120	COG4251	negative regulation of phosphorylation
J3U87_27150	COG2205	protein histidine kinase activity
J3U87_27180	COG1404	Belongs to the peptidase S8 family
J3U87_27185	COG0463	Glycosyl transferase, family 2
J3U87_27195	COG1942	4-Oxalocrotonate Tautomerase
J3U87_27200	COG1253	flavin adenine dinucleotide binding
J3U87_27205	COG3033	Beta-eliminating lyase
J3U87_27230	COG0517	IMP dehydrogenase activity
J3U87_27245	COG0517	IMP dehydrogenase activity
J3U87_27255	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J3U87_27260	COG1518	maintenance of DNA repeat elements
J3U87_27290	COG1203	CRISPR-associated helicase, Cas3
J3U87_27355	COG0644	oxidoreductase
J3U87_27360	COG0517	IMP dehydrogenase activity
J3U87_27365	COG4974	Belongs to the 'phage' integrase family
J3U87_27370	COG4974	Belongs to the 'phage' integrase family
J3U87_27390	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J3U87_27400	COG0517	IMP dehydrogenase activity
J3U87_27415	COG1012	belongs to the aldehyde dehydrogenase family
J3U87_27450	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J3U87_27455	COG3290	protein histidine kinase activity
J3U87_27485	COG2234	aminopeptidase activity
J3U87_27525	COG0463	Glycosyl transferase, family 2
J3U87_27620	COG1574	metal-dependent hydrolase with the TIM-barrel fold
J3U87_27630	COG0840	transmembrane signaling receptor activity
J3U87_27640	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J3U87_27645	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J3U87_27645	COG4651	solute:proton antiporter activity
J3U87_27665	COG2234	aminopeptidase activity
J3U87_27675	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
J3U87_27695	COG1269	ATP hydrolysis coupled proton transport
J3U87_27700	COG1394	ATPase activity, coupled to movement of substances
J3U87_27715	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
J3U87_27720	COG1051	belongs to the nudix hydrolase family
J3U87_27720	COG1056	cytidyltransferase-related domain
J3U87_27770	COG1595	DNA-templated transcription, initiation
J3U87_27775	COG0438	transferase activity, transferring glycosyl groups
J3U87_27790	COG3279	Response regulator of the LytR AlgR family
J3U87_27855	COG0793	Belongs to the peptidase S41A family
J3U87_27910	COG0326	Molecular chaperone. Has ATPase activity
J3U87_28050	COG3609	addiction module antidote protein, CC2985 family
J3U87_28095	COG0626	cystathionine gamma-synthase activity
J3U87_28100	COG0626	cystathionine gamma-synthase activity
J3U87_28150	COG2205	protein histidine kinase activity
J3U87_28150	COG0784	Response regulator, receiver
J3U87_28155	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J3U87_28160	COG4251	negative regulation of phosphorylation
J3U87_28180	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J3U87_28185	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J3U87_28195	COG1454	alcohol dehydrogenase
J3U87_28210	COG2089	acid synthase
J3U87_28220	COG3209	COG3209 Rhs family protein
J3U87_28245	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J3U87_28250	COG0302	gtp cyclohydrolase
J3U87_28290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J3U87_28300	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J3U87_28310	COG0346	lactoylglutathione lyase activity
J3U87_28330	COG3710	Transcriptional regulator
J3U87_28340	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J3U87_28375	COG2204	response regulator
J3U87_28400	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J3U87_28430	COG2217	Heavy metal translocating P-type atpase
J3U87_28440	COG3279	Response regulator of the LytR AlgR family
J3U87_28485	COG3279	Response regulator of the LytR AlgR family
J3U87_28490	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J3U87_28520	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_28525	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_28535	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
J3U87_28550	COG0515	serine threonine protein kinase
J3U87_28550	COG2815	serine threonine protein kinase
J3U87_28595	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J3U87_28595	COG2111	Na H antiporter
J3U87_28605	COG0651	ATP synthesis coupled electron transport
J3U87_28610	COG0651	ATP synthesis coupled electron transport
J3U87_28675	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J3U87_28685	COG0494	nUDIX hydrolase
J3U87_28695	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
J3U87_28720	COG2199	diguanylate cyclase activity
J3U87_28720	COG2203	Gaf domain
J3U87_28735	COG2319	Wd-40 repeat
J3U87_28735	COG4249	Peptidase C14 caspase catalytic subunit p20
J3U87_28765	COG5002	protein histidine kinase activity
J3U87_28785	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3U87_28800	COG0789	Transcriptional regulator
J3U87_28815	COG0641	radical SAM
J3U87_28910	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J3U87_29020	COG0582	viral genome integration into host DNA
J3U87_29230	COG0631	protein serine/threonine phosphatase activity
J3U87_29275	COG3275	phosphorelay sensor kinase activity
J3U87_29280	COG3279	Response regulator of the LytR AlgR family
J3U87_29305	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J3U87_29305	COG0189	ligase activity
J3U87_29310	COG0367	asparagine synthase
J3U87_29325	COG3485	protocatechuate 3,4-dioxygenase
J3U87_29330	COG2124	cytochrome p450
J3U87_29340	COG2204	response regulator
J3U87_29345	COG2814	Major facilitator Superfamily
J3U87_29375	COG3275	phosphorelay sensor kinase activity
J3U87_29380	COG3279	Response regulator of the LytR AlgR family
J3U87_29385	COG3507	Belongs to the glycosyl hydrolase 43 family
J3U87_29400	COG1070	Carbohydrate kinase
J3U87_29410	COG2814	Major facilitator Superfamily
J3U87_29425	COG4771	TonB-dependent receptor
J3U87_29440	COG0154	amidase activity
J3U87_29465	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J3U87_29470	COG4152	abc transporter atp-binding protein
J3U87_29485	COG3604	Transcriptional regulator
J3U87_29545	COG2433	Pfam Transposase IS66
J3U87_29595	COG0515	serine threonine protein kinase
J3U87_29595	COG2815	serine threonine protein kinase
J3U87_29650	COG0515	serine threonine protein kinase
J3U87_29660	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J3U87_29665	COG5000	phosphorelay sensor kinase activity
J3U87_29670	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
J3U87_29685	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J3U87_29685	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J3U87_29720	COG2205	protein histidine kinase activity
J3U87_29720	COG0784	Response regulator, receiver
J3U87_29735	COG1132	(ABC) transporter
J3U87_29740	COG1132	(ABC) transporter
J3U87_29755	COG1131	(ABC) transporter
J3U87_29795	COG4771	TonB-dependent receptor
J3U87_29805	COG0659	secondary active sulfate transmembrane transporter activity
J3U87_29815	COG2207	Transcriptional regulator
J3U87_29830	COG4771	TonB-dependent receptor
J3U87_29845	COG0523	cobalamin synthesis protein
J3U87_29880	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J3U87_29900	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
J3U87_29905	COG0116	Belongs to the methyltransferase superfamily
J3U87_29905	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J3U87_29920	COG1192	Involved in chromosome partitioning
J3U87_29925	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
J3U87_29930	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
J3U87_29975	COG5002	protein histidine kinase activity
J3U87_29975	COG0784	Response regulator, receiver
J3U87_29980	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J3U87_30015	COG1607	acyl-coa hydrolase
J3U87_30055	COG3292	Two component regulator propeller
J3U87_30055	COG2205	protein histidine kinase activity
J3U87_30055	COG0745	RESPONSE REGULATOR receiver
J3U87_30060	COG4771	TonB-dependent receptor
J3U87_30070	COG4774	siderophore transport
J3U87_30090	COG1136	(ABC) transporter
J3U87_30095	COG0577	efflux transmembrane transporter activity
J3U87_30100	COG1136	(ABC) transporter
J3U87_30100	COG0577	efflux transmembrane transporter activity
J3U87_30105	COG2204	response regulator
J3U87_30110	COG4191	Histidine kinase
J3U87_30170	COG1131	(ABC) transporter
J3U87_30215	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_30235	COG1960	acyl-CoA dehydrogenase activity
J3U87_30240	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J3U87_30250	COG1309	transcriptional regulator
J3U87_30290	COG2815	serine threonine protein kinase
J3U87_30290	COG0515	serine threonine protein kinase
J3U87_30335	COG0745	RESPONSE REGULATOR receiver
J3U87_30365	COG0254	rRNA binding
J3U87_30370	COG4589	Belongs to the CDS family
J3U87_30380	COG0714	Associated with various cellular activities
J3U87_30385	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
J3U87_30390	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J3U87_30395	COG0045	succinate-CoA ligase (ADP-forming) activity
J3U87_30400	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
J3U87_30405	COG0105	UTP biosynthetic process
J3U87_30410	COG3590	peptidase
J3U87_30470	COG0612	Peptidase, M16
J3U87_30475	COG2204	response regulator
J3U87_30500	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
J3U87_30525	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J3U87_30525	COG2111	Na H antiporter
J3U87_30530	COG2111	Na H antiporter
J3U87_30535	COG1006	Multisubunit Na H antiporter MnhC subunit
J3U87_30540	COG0651	ATP synthesis coupled electron transport
J3U87_30545	COG1863	multisubunit Na H antiporter MnhE subunit
J3U87_30550	COG2212	antiporter activity
J3U87_30555	COG1320	monovalent cation:proton antiporter activity
J3U87_30560	COG0471	metal ion transport
J3U87_30560	COG3273	potassium ion transport
J3U87_30595	COG0745	RESPONSE REGULATOR receiver
J3U87_30600	COG0511	ligase activity, forming carbon-carbon bonds
J3U87_30605	COG0439	Biotin carboxylase
J3U87_30610	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J3U87_30655	COG3292	Two component regulator propeller
J3U87_30655	COG2205	protein histidine kinase activity
J3U87_30655	COG3292	Two component regulator propeller
J3U87_30655	COG0745	RESPONSE REGULATOR receiver
J3U87_30655	COG0745	RESPONSE REGULATOR receiver
J3U87_30655	COG2205	protein histidine kinase activity
J3U87_30660	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J3U87_30675	COG1804	L-carnitine dehydratase bile acid-inducible protein F
J3U87_30680	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J3U87_30685	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
J3U87_30700	COG3290	protein histidine kinase activity
J3U87_30710	COG2815	serine threonine protein kinase
J3U87_30710	COG0515	serine threonine protein kinase
J3U87_30730	COG5002	protein histidine kinase activity
J3U87_30730	COG2198	Histidine kinase
J3U87_30730	COG0784	Response regulator, receiver
J3U87_30745	COG0546	phosphoglycolate phosphatase activity
J3U87_30765	COG2936	dipeptidyl-peptidase activity
J3U87_30775	COG2815	serine threonine protein kinase
J3U87_30775	COG0515	serine threonine protein kinase
J3U87_30805	COG2205	protein histidine kinase activity
J3U87_30810	COG0745	RESPONSE REGULATOR receiver
J3U87_30820	COG3339	Conserved Protein
J3U87_30825	COG0840	transmembrane signaling receptor activity
J3U87_30840	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J3U87_30845	COG0052	Belongs to the universal ribosomal protein uS2 family
J3U87_30850	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J3U87_30855	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
J3U87_30860	COG1668	transmembrane transport
J3U87_30865	COG4555	ABC transporter
J3U87_30890	COG0625	glutathione transferase activity
J3U87_30900	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J3U87_30905	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J3U87_30950	COG1725	Transcriptional regulator
J3U87_30980	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J3U87_30990	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_31015	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J3U87_31060	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_31060	COG0604	alcohol dehydrogenase
J3U87_31060	COG3321	synthase
J3U87_31090	COG3842	ATPase activity
J3U87_31095	COG0395	ABC-type sugar transport system, permease component
J3U87_31100	COG1175	transmembrane transport
J3U87_31105	COG1653	transport
J3U87_31115	COG2815	serine threonine protein kinase
J3U87_31115	COG0515	serine threonine protein kinase
J3U87_31185	COG1228	amidohydrolase
J3U87_31225	COG0545	Peptidyl-prolyl cis-trans isomerase
J3U87_31230	COG2382	esterase
J3U87_31240	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
J3U87_31270	COG2267	carboxylic ester hydrolase activity
J3U87_31290	COG0529	Catalyzes the synthesis of activated sulfate
J3U87_31290	COG2895	sulfate adenylyltransferase (ATP) activity
J3U87_31295	COG0175	sulfate reduction
J3U87_31300	COG0529	Catalyzes the synthesis of activated sulfate
J3U87_31320	COG0515	serine threonine protein kinase
J3U87_31320	COG2815	serine threonine protein kinase
J3U87_31350	COG2319	Wd-40 repeat
J3U87_31350	COG4249	Peptidase C14 caspase catalytic subunit p20
J3U87_31370	COG1032	radical SAM domain protein
J3U87_31385	COG5002	protein histidine kinase activity
J3U87_31400	COG0583	DNA-binding transcription factor activity
J3U87_31425	COG3534	alpha-L-arabinofuranosidase
J3U87_31470	COG2169	Transcriptional regulator
J3U87_31470	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J3U87_31480	COG1454	alcohol dehydrogenase
J3U87_31495	COG0688	phosphatidylethanolamine metabolic process
J3U87_31500	COG1683	Conserved Protein
J3U87_31540	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_31560	COG4335	DNA alkylation repair
J3U87_31590	COG4771	TonB-dependent receptor
J3U87_31605	COG4977	sequence-specific DNA binding
J3U87_31615	COG2010	Cytochrome c
J3U87_31620	COG3256	nitric oxide reductase
J3U87_31665	COG0243	molybdopterin cofactor binding
J3U87_31715	COG1459	type II secretion system
J3U87_31720	COG4968	Prepilin-type N-terminal cleavage methylation domain
J3U87_31730	COG1450	Type ii and iii secretion system protein
J3U87_31840	COG1131	(ABC) transporter
J3U87_31845	COG3275	phosphorelay sensor kinase activity
J3U87_31850	COG3279	Response regulator of the LytR AlgR family
J3U87_31880	COG4249	Peptidase C14 caspase catalytic subunit p20
J3U87_31880	COG2319	Wd-40 repeat
J3U87_31905	COG0640	Transcriptional regulator
J3U87_31930	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J3U87_31980	COG2815	serine threonine protein kinase
J3U87_31980	COG0515	serine threonine protein kinase
J3U87_31985	COG0784	Response regulator, receiver
J3U87_31985	COG2205	protein histidine kinase activity
J3U87_31990	COG2204	response regulator
J3U87_32000	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J3U87_32005	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_32005	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_32005	COG3321	synthase
J3U87_32005	COG4221	oxidoreductase activity
J3U87_32010	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_32010	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_32010	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_32010	COG3321	synthase
J3U87_32010	COG4221	oxidoreductase activity
J3U87_32010	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_32010	COG3321	synthase
J3U87_32010	COG4221	oxidoreductase activity
J3U87_32015	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_32015	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_32015	COG3321	synthase
J3U87_32015	COG4221	oxidoreductase activity
J3U87_32020	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_32020	COG0300	oxidoreductase activity
J3U87_32020	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_32020	COG0318	PFAM AMP-dependent synthetase and ligase
J3U87_32020	COG3321	synthase
J3U87_32030	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_32030	COG0300	oxidoreductase activity
J3U87_32030	COG3321	synthase
J3U87_32030	COG0300	oxidoreductase activity
J3U87_32030	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_32030	COG3321	synthase
J3U87_32030	COG4221	oxidoreductase activity
J3U87_32030	COG4221	oxidoreductase activity
J3U87_32035	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_32035	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_32035	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_32035	COG3321	synthase
J3U87_32035	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_32050	COG1404	Belongs to the peptidase S8 family
J3U87_32055	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
J3U87_32070	COG2205	protein histidine kinase activity
J3U87_32070	COG5002	protein histidine kinase activity
J3U87_32070	COG0784	Response regulator, receiver
J3U87_32075	COG4771	TonB-dependent receptor
J3U87_32085	COG2203	Gaf domain
J3U87_32085	COG3706	GGDEF domain
J3U87_32085	COG5001	Diguanylate cyclase
J3U87_32085	COG4251	negative regulation of phosphorylation
J3U87_32090	COG2226	methyltransferase
J3U87_32160	COG3220	belongs to the UPF0276 family
J3U87_32170	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J3U87_32185	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J3U87_32195	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J3U87_32210	COG4771	TonB-dependent receptor
J3U87_32215	COG0616	signal peptide processing
J3U87_32245	COG0583	DNA-binding transcription factor activity
J3U87_32250	COG1902	pentaerythritol trinitrate reductase activity
J3U87_32270	COG1335	isochorismatase
J3U87_32295	COG4771	TonB-dependent receptor
J3U87_32315	COG3227	Zinc metalloprotease (Elastase)
J3U87_32360	COG2267	carboxylic ester hydrolase activity
J3U87_32370	COG0745	RESPONSE REGULATOR receiver
J3U87_32375	COG2234	aminopeptidase activity
J3U87_32430	COG0137	argininosuccinate synthase activity
J3U87_32435	COG1438	arginine binding
J3U87_32445	COG1024	Enoyl-CoA hydratase
J3U87_32455	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J3U87_32465	COG0183	Belongs to the thiolase family
J3U87_32470	COG1024	Enoyl-CoA hydratase
J3U87_32470	COG1250	3-hydroxyacyl-CoA dehydrogenase
J3U87_32475	COG1022	Amp-dependent synthetase and ligase
J3U87_32480	COG1960	acyl-CoA dehydrogenase activity
J3U87_32485	COG5002	protein histidine kinase activity
J3U87_32535	COG1611	Belongs to the LOG family
J3U87_32540	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J3U87_32580	COG1032	radical SAM domain protein
J3U87_32595	COG2205	protein histidine kinase activity
J3U87_32620	COG4771	TonB-dependent receptor
J3U87_32625	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_32675	COG1253	flavin adenine dinucleotide binding
J3U87_32680	COG3290	protein histidine kinase activity
J3U87_32685	COG2815	serine threonine protein kinase
J3U87_32685	COG0515	serine threonine protein kinase
J3U87_32695	COG3292	Two component regulator propeller
J3U87_32695	COG0745	RESPONSE REGULATOR receiver
J3U87_32695	COG2205	protein histidine kinase activity
J3U87_32700	COG0457	Tetratricopeptide repeat
J3U87_32700	COG0705	Rhomboid family
J3U87_32705	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J3U87_32735	COG0784	Response regulator, receiver
J3U87_32735	COG5002	protein histidine kinase activity
J3U87_32735	COG2205	protein histidine kinase activity
J3U87_32740	COG1648	precorrin-2 dehydrogenase activity
J3U87_32740	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J3U87_32745	COG0535	radical SAM domain protein
J3U87_32775	COG1648	precorrin-2 dehydrogenase activity
J3U87_32775	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J3U87_32785	COG2866	Carboxypeptidase
J3U87_32815	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J3U87_32825	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_32830	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
J3U87_32835	COG0083	homoserine kinase activity
J3U87_32840	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J3U87_32885	COG0432	Pfam Uncharacterised protein family UPF0047
J3U87_32890	COG0305	Participates in initiation and elongation during chromosome replication
J3U87_32895	COG0318	PFAM AMP-dependent synthetase and ligase
J3U87_32900	COG0596	Alpha beta hydrolase
J3U87_32905	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J3U87_32915	COG0667	Aldo Keto reductase
J3U87_32920	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J3U87_32930	COG0793	Belongs to the peptidase S41A family
J3U87_32930	COG4946	Tricorn protease homolog
J3U87_32940	COG2226	methyltransferase
J3U87_32990	COG1476	TRANSCRIPTIONal
J3U87_33005	COG1132	(ABC) transporter
J3U87_33040	COG1752	Esterase of the alpha-beta hydrolase superfamily
J3U87_33065	COG0515	serine threonine protein kinase
J3U87_33065	COG2815	serine threonine protein kinase
J3U87_33080	COG0515	serine threonine protein kinase
J3U87_33120	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
J3U87_33130	COG0640	Transcriptional regulator
J3U87_33150	COG0625	glutathione transferase activity
J3U87_33170	COG4638	Rieske (2fe-2S)
J3U87_33225	COG1309	transcriptional regulator
J3U87_33255	COG2205	protein histidine kinase activity
J3U87_33255	COG0784	Response regulator, receiver
J3U87_33265	COG0789	Transcriptional regulator
J3U87_33270	COG1131	(ABC) transporter
J3U87_33365	COG0431	NADPH-dependent FMN reductase
J3U87_33370	COG2818	Glycosylase
J3U87_33390	COG3842	ATPase activity
J3U87_33395	COG1176	ABC-type spermidine putrescine transport system, permease component I
J3U87_33400	COG1177	transmembrane transport
J3U87_33405	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
J3U87_33415	COG0577	efflux transmembrane transporter activity
J3U87_33425	COG0577	efflux transmembrane transporter activity
J3U87_33425	COG1136	(ABC) transporter
J3U87_33435	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_33435	COG3321	synthase
J3U87_33435	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_33435	COG0318	PFAM AMP-dependent synthetase and ligase
J3U87_33435	COG0300	oxidoreductase activity
J3U87_33440	COG3321	synthase
J3U87_33440	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J3U87_33440	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
J3U87_33440	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_33455	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_33455	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_33455	COG3321	synthase
J3U87_33455	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_33455	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_33460	COG4221	oxidoreductase activity
J3U87_33460	COG0300	oxidoreductase activity
J3U87_33460	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_33460	COG3321	synthase
J3U87_33465	COG3321	synthase
J3U87_33465	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_33465	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J3U87_33465	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_33465	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J3U87_33470	COG2070	2-Nitropropane dioxygenase
J3U87_33470	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J3U87_33480	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J3U87_33485	COG0508	dehydrogenase complex catalyzes the overall conversion of
J3U87_33510	COG2885	chlorophyll binding
J3U87_33610	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J3U87_33620	COG3760	aminoacyl-tRNA metabolism involved in translational fidelity
J3U87_33630	COG0617	tRNA 3'-terminal CCA addition
J3U87_33635	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J3U87_33645	COG0116	Belongs to the methyltransferase superfamily
J3U87_33645	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J3U87_33650	COG0631	protein serine/threonine phosphatase activity
J3U87_33670	COG0642	Histidine kinase
J3U87_33675	COG0745	RESPONSE REGULATOR receiver
J3U87_33680	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J3U87_33685	COG1566	PFAM secretion protein HlyD family protein
J3U87_33730	COG0784	Response regulator, receiver
J3U87_33735	COG4251	negative regulation of phosphorylation
J3U87_33740	COG0666	response to abiotic stimulus
J3U87_33745	COG0784	Response regulator, receiver
J3U87_33750	COG5002	protein histidine kinase activity
J3U87_33750	COG5001	Diguanylate cyclase
J3U87_33760	COG4251	negative regulation of phosphorylation
J3U87_33820	COG1233	COG1233 Phytoene dehydrogenase and related
J3U87_33865	COG0390	transport system, permease component
J3U87_33870	COG3842	ATPase activity
J3U87_33880	COG2188	Transcriptional regulator
J3U87_33885	COG1131	(ABC) transporter
J3U87_33895	COG1131	(ABC) transporter
J3U87_33925	COG0515	serine threonine protein kinase
J3U87_33925	COG2815	serine threonine protein kinase
J3U87_33930	COG4946	Tricorn protease homolog
J3U87_33930	COG0793	Belongs to the peptidase S41A family
J3U87_33970	COG0583	DNA-binding transcription factor activity
J3U87_33975	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J3U87_33980	COG1309	transcriptional regulator
J3U87_33985	COG4191	Histidine kinase
J3U87_34000	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J3U87_34020	COG2207	Transcriptional regulator
J3U87_34050	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J3U87_34055	COG3292	Two component regulator propeller
J3U87_34055	COG2205	protein histidine kinase activity
J3U87_34055	COG0745	RESPONSE REGULATOR receiver
J3U87_34065	COG1028	Short-chain dehydrogenase reductase Sdr
J3U87_34075	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J3U87_34080	COG1538	Outer membrane efflux protein
J3U87_34085	COG1309	transcriptional regulator
J3U87_34130	COG1404	Belongs to the peptidase S8 family
J3U87_34135	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J3U87_34145	COG2205	protein histidine kinase activity
J3U87_34170	COG2165	general secretion pathway protein
J3U87_34175	COG0488	(ABC) transporter
J3U87_34180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J3U87_34190	COG1538	Outer membrane efflux protein
J3U87_34195	COG1309	transcriptional regulator
J3U87_34200	COG0287	Prephenate dehydrogenase
J3U87_34200	COG1605	Chorismate mutase
J3U87_34210	COG5002	protein histidine kinase activity
J3U87_34215	COG0745	RESPONSE REGULATOR receiver
J3U87_34230	COG1733	regulation of RNA biosynthetic process
J3U87_34245	COG2423	ornithine cyclodeaminase activity
J3U87_34275	COG1476	TRANSCRIPTIONal
J3U87_34330	COG0484	heat shock protein binding
J3U87_34350	COG2815	serine threonine protein kinase
J3U87_34350	COG0515	serine threonine protein kinase
J3U87_34420	COG3436	PFAM IS66 Orf2 family protein
J3U87_34425	COG4372	Transposase
J3U87_34455	COG4712	double-strand break repair protein
J3U87_34490	COG0270	DNA (cytosine-5-)-methyltransferase activity
J3U87_34515	COG4974	Belongs to the 'phage' integrase family
J3U87_34520	COG4974	Belongs to the 'phage' integrase family
J3U87_34565	COG0582	viral genome integration into host DNA
J3U87_34610	COG0515	serine threonine protein kinase
J3U87_34610	COG2815	serine threonine protein kinase
J3U87_34625	COG1106	Psort location Cytoplasmic, score
J3U87_34690	COG2340	Cysteine-rich secretory protein family
J3U87_34705	COG2385	sporulation resulting in formation of a cellular spore
J3U87_34705	COG2385	sporulation resulting in formation of a cellular spore
J3U87_34710	COG0848	biopolymer transport protein
J3U87_34715	COG0811	peptide transport
J3U87_34720	COG0823	Involved in the tonB-independent uptake of proteins
J3U87_34720	COG1506	peptidase
J3U87_34755	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J3U87_34760	COG0140	phosphoribosyl-ATP diphosphatase activity
J3U87_34760	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J3U87_34765	COG0107	imidazoleglycerol-phosphate synthase activity
J3U87_34770	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J3U87_34775	COG0131	Imidazoleglycerol-phosphate dehydratase
J3U87_34780	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J3U87_34785	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
J3U87_34800	COG0495	leucyl-tRNA aminoacylation
J3U87_34810	COG2855	membrane
J3U87_34820	COG3290	protein histidine kinase activity
J3U87_34825	COG2885	chlorophyll binding
J3U87_34830	COG1215	transferase activity, transferring glycosyl groups
J3U87_34845	COG0557	exoribonuclease II activity
J3U87_34855	COG0534	Mate efflux family protein
J3U87_34865	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J3U87_34895	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J3U87_34900	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J3U87_34950	COG0640	Transcriptional regulator
J3U87_34960	COG1132	(ABC) transporter
J3U87_34965	COG3321	synthase
J3U87_34965	COG0604	alcohol dehydrogenase
J3U87_34985	COG0606	chelatase, subunit chli
J3U87_34990	COG0220	tRNA (guanine-N7-)-methyltransferase activity