locus-tag class description AM1_0003 PF00293 NUDIX domain AM1_0009 PF00478 IMP dehydrogenase / GMP reductase domain AM1_0009 PF00571 CBS domain AM1_0011 PF01343 Peptidase family S49 AM1_0013 PF00892 EamA-like transporter family AM1_0014 PF00860 Permease family AM1_0016 PF03707 Bacterial signalling protein N terminal repeat AM1_0016 PF00990 Diguanylate cyclase, GGDEF domain AM1_0016 PF00563 EAL domain AM1_0017 PF13188 PAS domain AM1_0017 PF08448 PAS fold AM1_0017 PF00512 His Kinase A (phospho-acceptor) domain AM1_0017 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0017 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0017 PF13188 PAS domain AM1_0017 PF08448 PAS fold AM1_0017 PF00512 His Kinase A (phospho-acceptor) domain AM1_0017 PF00072 Response regulator receiver domain AM1_0017 PF00072 Response regulator receiver domain AM1_0020 PF13638 PIN domain AM1_0020 PF02562 PhoH-like protein AM1_0024 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AM1_0024 PF17126 RsmF rRNA methyltransferase first C-terminal domain AM1_0024 PF01189 16S rRNA methyltransferase RsmB/F AM1_0028 PF00294 pfkB family carbohydrate kinase AM1_0029 PF00196 Bacterial regulatory proteins, luxR family AM1_0029 PF00072 Response regulator receiver domain AM1_0034 PF02618 YceG-like family AM1_0036 PF03652 Holliday junction resolvase AM1_0040 PF00395 S-layer homology domain AM1_0040 PF04966 Carbohydrate-selective porin, OprB family AM1_0044 PF00106 short chain dehydrogenase AM1_0046 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AM1_0048 PF01590 GAF domain AM1_0048 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM1_0049 PF13460 NAD(P)H-binding AM1_0060 PF13737 Transposase DDE domain AM1_0062 PF00665 Integrase core domain AM1_0062 PF13333 Integrase core domain AM1_0062 PF13276 HTH-like domain AM1_0064 PF00872 Transposase, Mutator family AM1_0068 PF09308 LuxQ, periplasmic AM1_0068 PF00512 His Kinase A (phospho-acceptor) domain AM1_0068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0068 PF00072 Response regulator receiver domain AM1_0069 PF00563 EAL domain AM1_0069 PF01590 GAF domain AM1_0069 PF00990 Diguanylate cyclase, GGDEF domain AM1_0069 PF00360 Phytochrome region AM1_0070 PF01894 Uncharacterised protein family UPF0047 AM1_0073 PF00924 Mechanosensitive ion channel AM1_0073 PF12795 Mechanosensitive ion channel porin domain AM1_0073 PF12794 Mechanosensitive ion channel inner membrane domain 1 AM1_0079 PF01544 CorA-like Mg2+ transporter protein AM1_0083 PF01694 Rhomboid family AM1_0084 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM1_0084 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM1_0084 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM1_0084 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM1_0085 PF07549 SecD/SecF GG Motif AM1_0085 PF02355 Protein export membrane protein AM1_0091 PF00194 Eukaryotic-type carbonic anhydrase AM1_0095 PF01610 Transposase AM1_0095 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_0095 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_0102 PF00872 Transposase, Mutator family AM1_0109 PF10742 Protein of unknown function (DUF2555) AM1_0110 PF02441 Flavoprotein AM1_0110 PF04127 DNA / pantothenate metabolism flavoprotein AM1_0112 PF01967 MoaC family AM1_0117 PF02627 Carboxymuconolactone decarboxylase family AM1_0119 PF08281 Sigma-70, region 4 AM1_0119 PF04542 Sigma-70 region 2 AM1_0119 PF12680 SnoaL-like domain AM1_0124 PF13808 DDE_Tnp_1-associated AM1_0124 PF01609 Transposase DDE domain AM1_0131 PF03880 DbpA RNA binding domain AM1_0131 PF00270 DEAD/DEAH box helicase AM1_0131 PF12343 Cold shock protein DEAD box A AM1_0131 PF00271 Helicase conserved C-terminal domain AM1_0132 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM1_0133 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM1_0134 PF01658 Myo-inositol-1-phosphate synthase AM1_0137 PF00005 ABC transporter AM1_0141 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_0141 PF00403 Heavy-metal-associated domain AM1_0141 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM1_0146 PF01636 Phosphotransferase enzyme family AM1_0149 PF04551 GcpE protein AM1_0155 PF07885 Ion channel AM1_0155 PF02254 TrkA-N domain AM1_0159 PF00355 Rieske [2Fe-2S] domain AM1_0162 PF00999 Sodium/hydrogen exchanger family AM1_0165 PF00931 NB-ARC domain AM1_0165 PF00400 WD domain, G-beta repeat AM1_0168 PF12849 PBP superfamily domain AM1_0169 PF02472 Biopolymer transport protein ExbD/TolR AM1_0171 PF01618 MotA/TolQ/ExbB proton channel family AM1_0172 PF00400 WD domain, G-beta repeat AM1_0172 PF00931 NB-ARC domain AM1_0175 PF00528 Binding-protein-dependent transport system inner membrane component AM1_0176 PF00528 Binding-protein-dependent transport system inner membrane component AM1_0177 PF12849 PBP superfamily domain AM1_0181 PF00226 DnaJ domain AM1_0181 PF01556 DnaJ C terminal domain AM1_0181 PF00684 DnaJ central domain AM1_0183 PF01740 STAS domain AM1_0188 PF00809 Pterin binding enzyme AM1_0193 PF03707 Bacterial signalling protein N terminal repeat AM1_0193 PF00990 Diguanylate cyclase, GGDEF domain AM1_0193 PF00563 EAL domain AM1_0197 PF09308 LuxQ, periplasmic AM1_0197 PF00072 Response regulator receiver domain AM1_0197 PF00512 His Kinase A (phospho-acceptor) domain AM1_0197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0204 PF00106 short chain dehydrogenase AM1_0210 PF00106 short chain dehydrogenase AM1_0212 PF00175 Oxidoreductase NAD-binding domain AM1_0212 PF00042 Globin AM1_0212 PF00970 Oxidoreductase FAD-binding domain AM1_0213 PF07690 Major Facilitator Superfamily AM1_0214 PF07690 Major Facilitator Superfamily AM1_0218 PF00563 EAL domain AM1_0218 PF12792 CSS motif domain associated with EAL AM1_0220 PF00672 HAMP domain AM1_0220 PF00512 His Kinase A (phospho-acceptor) domain AM1_0220 PF01627 Hpt domain AM1_0220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0220 PF00072 Response regulator receiver domain AM1_0220 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_0223 PF13546 DDE superfamily endonuclease AM1_0224 PF00072 Response regulator receiver domain AM1_0224 PF08448 PAS fold AM1_0224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0224 PF13426 PAS domain AM1_0224 PF00512 His Kinase A (phospho-acceptor) domain AM1_0227 PF00990 Diguanylate cyclase, GGDEF domain AM1_0227 PF00498 FHA domain AM1_0227 PF00563 EAL domain AM1_0245 PF00589 Phage integrase family AM1_0245 PF13356 Arm DNA-binding domain AM1_0249 PF02625 XdhC and CoxI family AM1_0249 PF13478 XdhC Rossmann domain AM1_0255 PF04115 Ureidoglycolate lyase AM1_0256 PF07885 Ion channel AM1_0256 PF17655 Inward rectifier potassium channel C-terminal domain AM1_0263 PF00004 ATPase family associated with various cellular activities (AAA) AM1_0263 PF16450 Proteasomal ATPase OB C-terminal domain AM1_0263 PF17758 Proteasomal ATPase OB N-terminal domain AM1_0267 PF00072 Response regulator receiver domain AM1_0267 PF00196 Bacterial regulatory proteins, luxR family AM1_0268 PF00512 His Kinase A (phospho-acceptor) domain AM1_0268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0283 PF03808 Glycosyl transferase WecB/TagA/CpsF family AM1_0284 PF00270 DEAD/DEAH box helicase AM1_0284 PF00271 Helicase conserved C-terminal domain AM1_0284 PF17764 3′ DNA-binding domain (3′BD) AM1_0284 PF18074 Primosomal protein N C-terminal domain AM1_0284 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AM1_0285 PF02954 Bacterial regulatory protein, Fis family AM1_0285 PF00072 Response regulator receiver domain AM1_0285 PF00158 Sigma-54 interaction domain AM1_0286 PF00072 Response regulator receiver domain AM1_0287 PF00512 His Kinase A (phospho-acceptor) domain AM1_0287 PF08446 PAS fold AM1_0287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0287 PF01590 GAF domain AM1_0287 PF00360 Phytochrome region AM1_0314 PF03483 B3/4 domain AM1_0314 PF03484 tRNA synthetase B5 domain AM1_0314 PF03147 Ferredoxin-fold anticodon binding domain AM1_0314 PF01588 Putative tRNA binding domain AM1_0314 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AM1_0319 PF01661 Macro domain AM1_0329 PF04493 Endonuclease V AM1_0333 PF00899 ThiF family AM1_0335 PF03976 Polyphosphate kinase 2 (PPK2) AM1_0336 PF18318 Glutamine synthetase C-terminal domain AM1_0336 PF12437 Glutamine synthetase type III N terminal AM1_0336 PF00120 Glutamine synthetase, catalytic domain AM1_0338 PF08460 Bacterial SH3 domain AM1_0338 PF01551 Peptidase family M23 AM1_0339 PF03239 Iron permease FTR1 family AM1_0341 PF03781 Sulfatase-modifying factor enzyme 1 AM1_0344 PF13737 Transposase DDE domain AM1_0350 PF01507 Phosphoadenosine phosphosulfate reductase family AM1_0359 PF12849 PBP superfamily domain AM1_0360 PF01699 Sodium/calcium exchanger protein AM1_0362 PF01554 MatE AM1_0365 PF04960 Glutaminase AM1_0373 PF00535 Glycosyl transferase family 2 AM1_0377 PF13439 Glycosyltransferase Family 4 AM1_0377 PF00534 Glycosyl transferases group 1 AM1_0378 PF00733 Asparagine synthase AM1_0378 PF13537 Glutamine amidotransferase domain AM1_0380 PF13439 Glycosyltransferase Family 4 AM1_0384 PF00534 Glycosyl transferases group 1 AM1_0384 PF13439 Glycosyltransferase Family 4 AM1_0386 PF00005 ABC transporter AM1_0386 PF00664 ABC transporter transmembrane region AM1_0387 PF00534 Glycosyl transferases group 1 AM1_0387 PF13579 Glycosyl transferase 4-like domain AM1_0391 PF13614 AAA domain AM1_0393 PF01370 NAD dependent epimerase/dehydratase family AM1_0394 PF00072 Response regulator receiver domain AM1_0394 PF00486 Transcriptional regulatory protein, C terminal AM1_0395 PF00989 PAS fold AM1_0395 PF13188 PAS domain AM1_0395 PF13426 PAS domain AM1_0395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0395 PF00512 His Kinase A (phospho-acceptor) domain AM1_0400 PF07516 SecA Wing and Scaffold domain AM1_0400 PF01043 SecA preprotein cross-linking domain AM1_0400 PF07517 SecA DEAD-like domain AM1_0400 PF02810 SEC-C motif AM1_0400 PF00271 Helicase conserved C-terminal domain AM1_0401 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM1_0401 PF02770 Acyl-CoA dehydrogenase, middle domain AM1_0401 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM1_0402 PF00004 ATPase family associated with various cellular activities (AAA) AM1_0402 PF07724 AAA domain (Cdc48 subfamily) AM1_0402 PF10431 C-terminal, D2-small domain, of ClpB protein AM1_0402 PF17871 AAA lid domain AM1_0402 PF02861 Clp amino terminal domain, pathogenicity island component AM1_0403 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AM1_0404 PF00483 Nucleotidyl transferase AM1_0405 PF16363 GDP-mannose 4,6 dehydratase AM1_0407 PF13614 AAA domain AM1_0408 PF01555 DNA methylase AM1_0409 PF00156 Phosphoribosyl transferase domain AM1_0411 PF01223 DNA/RNA non-specific endonuclease AM1_0412 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM1_0412 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AM1_0413 PF02457 DisA bacterial checkpoint controller nucleotide-binding AM1_0414 PF01255 Putative undecaprenyl diphosphate synthase AM1_0416 PF00684 DnaJ central domain AM1_0416 PF00226 DnaJ domain AM1_0416 PF01556 DnaJ C terminal domain AM1_0417 PF00482 Type II secretion system (T2SS), protein F AM1_0418 PF00437 Type II/IV secretion system protein AM1_0419 PF00437 Type II/IV secretion system protein AM1_0419 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM1_0422 PF00012 Hsp70 protein AM1_0423 PF01556 DnaJ C terminal domain AM1_0423 PF00226 DnaJ domain AM1_0423 PF00684 DnaJ central domain AM1_0429 PF03330 Lytic transglycolase AM1_0437 PF00583 Acetyltransferase (GNAT) family AM1_0437 PF13380 CoA binding domain AM1_0437 PF13607 Succinyl-CoA ligase like flavodoxin domain AM1_0439 PF01228 Glycine radical AM1_0439 PF02901 Pyruvate formate lyase-like AM1_0440 PF02896 PEP-utilising enzyme, TIM barrel domain AM1_0440 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM1_0440 PF00391 PEP-utilising enzyme, mobile domain AM1_0441 PF04055 Radical SAM superfamily AM1_0442 PF00465 Iron-containing alcohol dehydrogenase AM1_0442 PF00171 Aldehyde dehydrogenase family AM1_0443 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AM1_0443 PF09363 XFP C-terminal domain AM1_0443 PF09364 XFP N-terminal domain AM1_0444 PF02887 Pyruvate kinase, alpha/beta domain AM1_0444 PF00224 Pyruvate kinase, barrel domain AM1_0445 PF00871 Acetokinase family AM1_0448 PF00124 Photosynthetic reaction centre protein AM1_0450 PF00355 Rieske [2Fe-2S] domain AM1_0452 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_0454 PF13533 Biotin-lipoyl like AM1_0460 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_0465 PF02915 Rubrerythrin AM1_0466 PF01126 Heme oxygenase AM1_0467 PF06969 HemN C-terminal domain AM1_0467 PF04055 Radical SAM superfamily AM1_0469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0469 PF00512 His Kinase A (phospho-acceptor) domain AM1_0469 PF00072 Response regulator receiver domain AM1_0469 PF01627 Hpt domain AM1_0471 PF00873 AcrB/AcrD/AcrF family AM1_0473 PF07670 Nucleoside recognition AM1_0473 PF02421 Ferrous iron transport protein B AM1_0473 PF17910 FeoB cytosolic helical domain AM1_0473 PF07664 Ferrous iron transport protein B C terminus AM1_0481 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM1_0482 PF01152 Bacterial-like globin AM1_0485 PF13358 DDE superfamily endonuclease AM1_0495 PF13333 Integrase core domain AM1_0495 PF00665 Integrase core domain AM1_0495 PF13276 HTH-like domain AM1_0498 PF01695 IstB-like ATP binding protein AM1_0499 PF00665 Integrase core domain AM1_0504 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_0504 PF13359 DDE superfamily endonuclease AM1_0506 PF13359 DDE superfamily endonuclease AM1_0506 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_0510 PF10502 Signal peptidase, peptidase S26 AM1_0511 PF09055 Nickel-containing superoxide dismutase AM1_0514 PF00581 Rhodanese-like domain AM1_0514 PF00899 ThiF family AM1_0515 PF00072 Response regulator receiver domain AM1_0515 PF00196 Bacterial regulatory proteins, luxR family AM1_0516 PF07730 Histidine kinase AM1_0518 PF02397 Bacterial sugar transferase AM1_0522 PF00990 Diguanylate cyclase, GGDEF domain AM1_0522 PF00563 EAL domain AM1_0522 PF03707 Bacterial signalling protein N terminal repeat AM1_0524 PF07859 alpha/beta hydrolase fold AM1_0525 PF04542 Sigma-70 region 2 AM1_0525 PF04545 Sigma-70, region 4 AM1_0525 PF04539 Sigma-70 region 3 AM1_0526 PF01716 Manganese-stabilising protein / photosystem II polypeptide AM1_0529 PF01066 CDP-alcohol phosphatidyltransferase AM1_0532 PF11283 Protein of unknown function (DUF3084) AM1_0533 PF01078 Magnesium chelatase, subunit ChlI AM1_0533 PF17863 AAA lid domain AM1_0533 PF13519 von Willebrand factor type A domain AM1_0535 PF13546 DDE superfamily endonuclease AM1_0547 PF00990 Diguanylate cyclase, GGDEF domain AM1_0547 PF00072 Response regulator receiver domain AM1_0548 PF00563 EAL domain AM1_0548 PF00990 Diguanylate cyclase, GGDEF domain AM1_0548 PF03707 Bacterial signalling protein N terminal repeat AM1_0549 PF00202 Aminotransferase class-III AM1_0555 PF13614 AAA domain AM1_0556 PF03466 LysR substrate binding domain AM1_0556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_0559 PF02541 Ppx/GppA phosphatase family AM1_0560 PF01435 Peptidase family M48 AM1_0562 PF08460 Bacterial SH3 domain AM1_0562 PF01551 Peptidase family M23 AM1_0563 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AM1_0563 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM1_0563 PF13288 DXP reductoisomerase C-terminal domain AM1_0564 PF01590 GAF domain AM1_0564 PF00563 EAL domain AM1_0564 PF00990 Diguanylate cyclase, GGDEF domain AM1_0564 PF00360 Phytochrome region AM1_0565 PF01244 Membrane dipeptidase (Peptidase family M19) AM1_0568 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_0573 PF16295 Tetracyclin repressor-like, C-terminal domain AM1_0573 PF00440 Bacterial regulatory proteins, tetR family AM1_0574 PF14602 Hexapeptide repeat of succinyl-transferase AM1_0574 PF12464 Maltose acetyltransferase AM1_0575 PF00534 Glycosyl transferases group 1 AM1_0575 PF13439 Glycosyltransferase Family 4 AM1_0582 PF08448 PAS fold AM1_0582 PF00563 EAL domain AM1_0582 PF08447 PAS fold AM1_0582 PF00990 Diguanylate cyclase, GGDEF domain AM1_0584 PF07977 FabA-like domain AM1_0586 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AM1_0587 PF01103 Surface antigen AM1_0587 PF07244 Surface antigen variable number repeat AM1_0588 PF01259 SAICAR synthetase AM1_0590 PF00459 Inositol monophosphatase family AM1_0593 PF03600 Citrate transporter AM1_0593 PF02080 TrkA-C domain AM1_0594 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM1_0595 PF01758 Sodium Bile acid symporter family AM1_0596 PF13411 MerR HTH family regulatory protein AM1_0598 PF02092 Glycyl-tRNA synthetase beta subunit AM1_0599 PF00675 Insulinase (Peptidase family M16) AM1_0599 PF05193 Peptidase M16 inactive domain AM1_0601 PF00679 Elongation factor G C-terminus AM1_0601 PF03764 Elongation factor G, domain IV AM1_0601 PF00009 Elongation factor Tu GTP binding domain AM1_0601 PF14492 Elongation Factor G, domain II AM1_0602 PF01177 Asp/Glu/Hydantoin racemase AM1_0603 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM1_0604 PF02769 AIR synthase related protein, C-terminal domain AM1_0604 PF00586 AIR synthase related protein, N-terminal domain AM1_0606 PF00067 Cytochrome P450 AM1_0608 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM1_0608 PF00925 GTP cyclohydrolase II AM1_0609 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM1_0609 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM1_0615 PF01218 Coproporphyrinogen III oxidase AM1_0617 PF01048 Phosphorylase superfamily AM1_0619 PF00707 Translation initiation factor IF-3, C-terminal domain AM1_0619 PF05198 Translation initiation factor IF-3, N-terminal domain AM1_0620 PF01435 Peptidase family M48 AM1_0622 PF02903 Alpha amylase, N-terminal ig-like domain AM1_0622 PF00128 Alpha amylase, catalytic domain AM1_0622 PF16657 Maltogenic Amylase, C-terminal domain AM1_0624 PF08525 Opacity-associated protein A N-terminal motif AM1_0624 PF01551 Peptidase family M23 AM1_0624 PF01476 LysM domain AM1_0625 PF08279 HTH domain AM1_0625 PF02237 Biotin protein ligase C terminal domain AM1_0625 PF03099 Biotin/lipoate A/B protein ligase family AM1_0630 PF00082 Subtilase family AM1_0632 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_0632 PF03466 LysR substrate binding domain AM1_0633 PF17954 Quercetinase C-terminal cupin domain AM1_0633 PF02678 Pirin AM1_0635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0635 PF00512 His Kinase A (phospho-acceptor) domain AM1_0635 PF00072 Response regulator receiver domain AM1_0635 PF09308 LuxQ, periplasmic AM1_0636 PF00582 Universal stress protein family AM1_0637 PF00162 Phosphoglycerate kinase AM1_0642 PF13393 Histidyl-tRNA synthetase AM1_0642 PF03129 Anticodon binding domain AM1_0646 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM1_0647 PF02687 FtsX-like permease family AM1_0647 PF12704 MacB-like periplasmic core domain AM1_0647 PF00005 ABC transporter AM1_0648 PF00005 ABC transporter AM1_0649 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM1_0649 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM1_0649 PF06827 Zinc finger found in FPG and IleRS AM1_0652 PF02504 Fatty acid synthesis protein AM1_0653 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM1_0653 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM1_0654 PF00892 EamA-like transporter family AM1_0655 PF00936 BMC domain AM1_0656 PF00936 BMC domain AM1_0658 PF00005 ABC transporter AM1_0658 PF00571 CBS domain AM1_0661 PF03055 Retinal pigment epithelial membrane protein AM1_0664 PF12419 SNF2 Helicase protein AM1_0664 PF00176 SNF2 family N-terminal domain AM1_0664 PF00271 Helicase conserved C-terminal domain AM1_0666 PF00528 Binding-protein-dependent transport system inner membrane component AM1_0667 PF00226 DnaJ domain AM1_0667 PF01556 DnaJ C terminal domain AM1_0671 PF03649 Uncharacterised protein family (UPF0014) AM1_0672 PF08463 EcoEI R protein C-terminal AM1_0672 PF04851 Type III restriction enzyme, res subunit AM1_0672 PF00271 Helicase conserved C-terminal domain AM1_0672 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AM1_0679 PF02384 N-6 DNA Methylase AM1_0679 PF12161 HsdM N-terminal domain AM1_0681 PF13546 DDE superfamily endonuclease AM1_0683 PF03400 IS1 transposase AM1_0686 PF01850 PIN domain AM1_0694 PF07549 SecD/SecF GG Motif AM1_0694 PF02355 Protein export membrane protein AM1_0695 PF02355 Protein export membrane protein AM1_0695 PF07549 SecD/SecF GG Motif AM1_0696 PF02779 Transketolase, pyrimidine binding domain AM1_0696 PF02780 Transketolase, C-terminal domain AM1_0696 PF00364 Biotin-requiring enzyme AM1_0699 PF01209 ubiE/COQ5 methyltransferase family AM1_0701 PF05419 GUN4-like AM1_0701 PF16416 ARM-like repeat domain, GUN4-N terminal AM1_0702 PF00211 Adenylate and Guanylate cyclase catalytic domain AM1_0705 PF08502 LeuA allosteric (dimerisation) domain AM1_0705 PF00682 HMGL-like AM1_0708 PF00872 Transposase, Mutator family AM1_0713 PF13396 Phospholipase_D-nuclease N-terminal AM1_0713 PF13091 PLD-like domain AM1_0714 PF00360 Phytochrome region AM1_0714 PF00563 EAL domain AM1_0714 PF00990 Diguanylate cyclase, GGDEF domain AM1_0714 PF01590 GAF domain AM1_0716 PF00400 WD domain, G-beta repeat AM1_0720 PF00501 AMP-binding enzyme AM1_0724 PF00501 AMP-binding enzyme AM1_0725 PF02801 Beta-ketoacyl synthase, C-terminal domain AM1_0725 PF00550 Phosphopantetheine attachment site AM1_0725 PF14765 Polyketide synthase dehydratase AM1_0725 PF00109 Beta-ketoacyl synthase, N-terminal domain AM1_0725 PF16197 Ketoacyl-synthetase C-terminal extension AM1_0725 PF08659 KR domain AM1_0725 PF00501 AMP-binding enzyme AM1_0725 PF13193 AMP-binding enzyme C-terminal domain AM1_0725 PF00668 Condensation domain AM1_0726 PF00155 Aminotransferase class I and II AM1_0728 PF00106 short chain dehydrogenase AM1_0729 PF01555 DNA methylase AM1_0742 PF03400 IS1 transposase AM1_0744 PF14579 Helix-hairpin-helix motif AM1_0744 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM1_0744 PF01336 OB-fold nucleic acid binding domain AM1_0744 PF02811 PHP domain AM1_0744 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM1_0746 PF01809 Putative membrane protein insertion efficiency factor AM1_0747 PF03222 Tryptophan/tyrosine permease family AM1_0754 PF00588 SpoU rRNA Methylase family AM1_0755 PF01980 tRNA-methyltransferase O AM1_0755 PF18389 TrmO C-terminal domain AM1_0759 PF04072 Leucine carboxyl methyltransferase AM1_0769 PF02222 ATP-grasp domain AM1_0770 PF13840 ACT domain AM1_0770 PF00696 Amino acid kinase family AM1_0772 PF03459 TOBE domain AM1_0772 PF00005 ABC transporter AM1_0776 PF04241 Protein of unknown function (DUF423) AM1_0782 PF01513 ATP-NAD kinase AM1_0791 PF02574 Homocysteine S-methyltransferase AM1_0791 PF02219 Methylenetetrahydrofolate reductase AM1_0794 PF00486 Transcriptional regulatory protein, C terminal AM1_0794 PF00072 Response regulator receiver domain AM1_0798 PF03358 NADPH-dependent FMN reductase AM1_0800 PF00534 Glycosyl transferases group 1 AM1_0800 PF13439 Glycosyltransferase Family 4 AM1_0802 PF00174 Oxidoreductase molybdopterin binding domain AM1_0803 PF04321 RmlD substrate binding domain AM1_0806 PF12327 FtsZ family, C-terminal domain AM1_0806 PF00091 Tubulin/FtsZ family, GTPase domain AM1_0807 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM1_0807 PF14572 Phosphoribosyl synthetase-associated domain AM1_0809 PF00005 ABC transporter AM1_0810 PF13545 Crp-like helix-turn-helix domain AM1_0817 PF00305 Lipoxygenase AM1_0820 PF00440 Bacterial regulatory proteins, tetR family AM1_0822 PF00462 Glutaredoxin AM1_0824 PF00067 Cytochrome P450 AM1_0825 PF00684 DnaJ central domain AM1_0825 PF00226 DnaJ domain AM1_0825 PF01556 DnaJ C terminal domain AM1_0828 PF00486 Transcriptional regulatory protein, C terminal AM1_0828 PF00072 Response regulator receiver domain AM1_0829 PF00672 HAMP domain AM1_0829 PF13426 PAS domain AM1_0829 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0829 PF00512 His Kinase A (phospho-acceptor) domain AM1_0830 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AM1_0832 PF00211 Adenylate and Guanylate cyclase catalytic domain AM1_0832 PF13191 AAA ATPase domain AM1_0835 PF01593 Flavin containing amine oxidoreductase AM1_0836 PF00348 Polyprenyl synthetase AM1_0841 PF00675 Insulinase (Peptidase family M16) AM1_0841 PF05193 Peptidase M16 inactive domain AM1_0843 PF04134 Protein of unknown function, DUF393 AM1_0847 PF00905 Penicillin binding protein transpeptidase domain AM1_0847 PF03717 Penicillin-binding Protein dimerisation domain AM1_0847 PF03793 PASTA domain AM1_0849 PF01795 MraW methylase family AM1_0850 PF01126 Heme oxygenase AM1_0854 PF00266 Aminotransferase class-V AM1_0855 PF01979 Amidohydrolase family AM1_0857 PF00731 AIR carboxylase AM1_0858 PF01168 Alanine racemase, N-terminal domain AM1_0858 PF00842 Alanine racemase, C-terminal domain AM1_0859 PF02798 Glutathione S-transferase, N-terminal domain AM1_0859 PF00043 Glutathione S-transferase, C-terminal domain AM1_0860 PF00005 ABC transporter AM1_0861 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM1_0861 PF00005 ABC transporter AM1_0863 PF02653 Branched-chain amino acid transport system / permease component AM1_0866 PF00395 S-layer homology domain AM1_0866 PF04966 Carbohydrate-selective porin, OprB family AM1_0867 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_0868 PF01730 UreF AM1_0874 PF13333 Integrase core domain AM1_0874 PF13276 HTH-like domain AM1_0874 PF00665 Integrase core domain AM1_0875 PF05194 UreE urease accessory protein, C-terminal domain AM1_0875 PF02814 UreE urease accessory protein, N-terminal domain AM1_0876 PF01507 Phosphoadenosine phosphosulfate reductase family AM1_0878 PF08241 Methyltransferase domain AM1_0879 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AM1_0880 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AM1_0884 PF01209 ubiE/COQ5 methyltransferase family AM1_0890 PF12966 N-ATPase, AtpR subunit AM1_0891 PF00119 ATP synthase A chain AM1_0892 PF00137 ATP synthase subunit C AM1_0894 PF00430 ATP synthase B/B' CF(0) AM1_0895 PF00213 ATP synthase delta (OSCP) subunit AM1_0896 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM1_0896 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM1_0896 PF00306 ATP synthase alpha/beta chain, C terminal domain AM1_0897 PF00231 ATP synthase AM1_0899 PF05685 Putative restriction endonuclease AM1_0902 PF03193 RsgA GTPase AM1_0904 PF00694 Aconitase C-terminal domain AM1_0908 PF00072 Response regulator receiver domain AM1_0908 PF14332 Domain of unknown function (DUF4388) AM1_0909 PF00072 Response regulator receiver domain AM1_0912 PF01590 GAF domain AM1_0912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM1_0913 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0913 PF02895 Signal transducing histidine kinase, homodimeric domain AM1_0913 PF01584 CheW-like domain AM1_0913 PF07194 P2 response regulator binding domain AM1_0913 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0913 PF07194 P2 response regulator binding domain AM1_0913 PF01584 CheW-like domain AM1_0913 PF02895 Signal transducing histidine kinase, homodimeric domain AM1_0913 PF01627 Hpt domain AM1_0913 PF01627 Hpt domain AM1_0917 PF00909 Ammonium Transporter Family AM1_0919 PF02597 ThiS family AM1_0920 PF00291 Pyridoxal-phosphate dependent enzyme AM1_0925 PF03055 Retinal pigment epithelial membrane protein AM1_0926 PF01668 SmpB protein AM1_0930 PF02576 RimP N-terminal domain AM1_0931 PF08529 NusA N-terminal domain AM1_0931 PF13184 NusA-like KH domain AM1_0931 PF00575 S1 RNA binding domain AM1_0932 PF11987 Translation-initiation factor 2 AM1_0932 PF00009 Elongation factor Tu GTP binding domain AM1_0932 PF04760 Translation initiation factor IF-2, N-terminal region AM1_0936 PF00535 Glycosyl transferase family 2 AM1_0940 PF02637 GatB domain AM1_0940 PF02934 GatB/GatE catalytic domain AM1_0942 PF14437 MafB19-like deaminase AM1_0943 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM1_0946 PF00654 Voltage gated chloride channel AM1_0950 PF02887 Pyruvate kinase, alpha/beta domain AM1_0950 PF00224 Pyruvate kinase, barrel domain AM1_0951 PF00689 Cation transporting ATPase, C-terminus AM1_0951 PF00690 Cation transporter/ATPase, N-terminus AM1_0955 PF00403 Heavy-metal-associated domain AM1_0958 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM1_0958 PF08479 POTRA domain, ShlB-type AM1_0958 PF17287 POTRA domain AM1_0959 PF07689 KaiB domain AM1_0959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_0959 PF00512 His Kinase A (phospho-acceptor) domain AM1_0960 PF00999 Sodium/hydrogen exchanger family AM1_0963 PF01255 Putative undecaprenyl diphosphate synthase AM1_0965 PF13546 DDE superfamily endonuclease AM1_0968 PF13737 Transposase DDE domain AM1_0971 PF13180 PDZ domain AM1_0974 PF00005 ABC transporter AM1_0975 PF01494 FAD binding domain AM1_0979 PF17932 Tetracyclin repressor-like, C-terminal domain AM1_0979 PF00440 Bacterial regulatory proteins, tetR family AM1_0981 PF00849 RNA pseudouridylate synthase AM1_0986 PF00005 ABC transporter AM1_0988 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM1_0991 PF13181 Tetratricopeptide repeat AM1_0991 PF00535 Glycosyl transferase family 2 AM1_0992 PF06745 KaiC AM1_0993 PF07689 KaiB domain AM1_0994 PF07688 KaiA C-terminal domain AM1_0995 PF00117 Glutamine amidotransferase class-I AM1_0995 PF01171 PP-loop family AM1_0995 PF00958 GMP synthase C terminal domain AM1_0996 PF00128 Alpha amylase, catalytic domain AM1_0996 PF02806 Alpha amylase, C-terminal all-beta domain AM1_0996 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM1_1002 PF06426 Serine acetyltransferase, N-terminal AM1_1002 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_1004 PF14437 MafB19-like deaminase AM1_1006 PF00171 Aldehyde dehydrogenase family AM1_1011 PF01737 YCF9 AM1_1013 PF12627 Probable RNA and SrmB- binding site of polymerase A AM1_1013 PF01743 Poly A polymerase head domain AM1_1014 PF00528 Binding-protein-dependent transport system inner membrane component AM1_1015 PF00528 Binding-protein-dependent transport system inner membrane component AM1_1016 PF00005 ABC transporter AM1_1019 PF01040 UbiA prenyltransferase family AM1_1023 PF00535 Glycosyl transferase family 2 AM1_1024 PF00534 Glycosyl transferases group 1 AM1_1024 PF13439 Glycosyltransferase Family 4 AM1_1025 PF13439 Glycosyltransferase Family 4 AM1_1025 PF00534 Glycosyl transferases group 1 AM1_1037 PF08264 Anticodon-binding domain of tRNA AM1_1037 PF00133 tRNA synthetases class I (I, L, M and V) AM1_1037 PF13603 Leucyl-tRNA synthetase, Domain 2 AM1_1037 PF09334 tRNA synthetases class I (M) AM1_1040 PF05973 Phage derived protein Gp49-like (DUF891) AM1_1041 PF01381 Helix-turn-helix AM1_1052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_1052 PF03466 LysR substrate binding domain AM1_1055 PF00400 WD domain, G-beta repeat AM1_1056 PF00360 Phytochrome region AM1_1056 PF00990 Diguanylate cyclase, GGDEF domain AM1_1056 PF01590 GAF domain AM1_1056 PF00563 EAL domain AM1_1059 PF02545 Maf-like protein AM1_1062 PF00557 Metallopeptidase family M24 AM1_1064 PF02673 Bacitracin resistance protein BacA AM1_1068 PF02445 Quinolinate synthetase A protein AM1_1069 PF04472 Cell division protein SepF AM1_1070 PF01565 FAD binding domain AM1_1070 PF02913 FAD linked oxidases, C-terminal domain AM1_1073 PF00487 Fatty acid desaturase AM1_1078 PF02801 Beta-ketoacyl synthase, C-terminal domain AM1_1078 PF00109 Beta-ketoacyl synthase, N-terminal domain AM1_1079 PF00583 Acetyltransferase (GNAT) family AM1_1081 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM1_1082 PF02392 Ycf4 AM1_1083 PF00124 Photosynthetic reaction centre protein AM1_1084 PF00421 Photosystem II protein AM1_1087 PF07517 SecA DEAD-like domain AM1_1087 PF01043 SecA preprotein cross-linking domain AM1_1087 PF07516 SecA Wing and Scaffold domain AM1_1088 PF01914 MarC family integral membrane protein AM1_1092 PF01112 Asparaginase AM1_1093 PF08241 Methyltransferase domain AM1_1094 PF01960 ArgJ family AM1_1098 PF00072 Response regulator receiver domain AM1_1101 PF01627 Hpt domain AM1_1101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1101 PF00072 Response regulator receiver domain AM1_1101 PF01584 CheW-like domain AM1_1102 PF10127 RNA repair pathway DNA polymerase beta family AM1_1104 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM1_1104 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM1_1106 PF00072 Response regulator receiver domain AM1_1107 PF00072 Response regulator receiver domain AM1_1108 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM1_1108 PF16582 Middle domain of thiamine pyrophosphate AM1_1109 PF00425 chorismate binding enzyme AM1_1110 PF01040 UbiA prenyltransferase family AM1_1111 PF01556 DnaJ C terminal domain AM1_1111 PF00226 DnaJ domain AM1_1113 PF01513 ATP-NAD kinase AM1_1116 PF02151 UvrB/uvrC motif AM1_1116 PF12826 Helix-hairpin-helix motif AM1_1116 PF08459 UvrC Helix-hairpin-helix N-terminal AM1_1116 PF01541 GIY-YIG catalytic domain AM1_1118 PF08323 Starch synthase catalytic domain AM1_1118 PF00534 Glycosyl transferases group 1 AM1_1120 PF01241 Photosystem I psaG / psaK AM1_1121 PF00440 Bacterial regulatory proteins, tetR family AM1_1125 PF13546 DDE superfamily endonuclease AM1_1129 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits AM1_1130 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit AM1_1130 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits AM1_1131 PF01475 Ferric uptake regulator family AM1_1135 PF00421 Photosystem II protein AM1_1139 PF01264 Chorismate synthase AM1_1142 PF01628 HrcA protein C terminal domain AM1_1150 PF01435 Peptidase family M48 AM1_1152 PF13359 DDE superfamily endonuclease AM1_1152 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_1153 PF08460 Bacterial SH3 domain AM1_1153 PF01551 Peptidase family M23 AM1_1154 PF00216 Bacterial DNA-binding protein AM1_1156 PF01740 STAS domain AM1_1157 PF00072 Response regulator receiver domain AM1_1157 PF00486 Transcriptional regulatory protein, C terminal AM1_1158 PF13581 Histidine kinase-like ATPase domain AM1_1160 PF00293 NUDIX domain AM1_1161 PF00578 AhpC/TSA family AM1_1163 PF00583 Acetyltransferase (GNAT) family AM1_1164 PF12419 SNF2 Helicase protein AM1_1164 PF00271 Helicase conserved C-terminal domain AM1_1164 PF00176 SNF2 family N-terminal domain AM1_1172 PF03190 Protein of unknown function, DUF255 AM1_1178 PF13847 Methyltransferase domain AM1_1179 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AM1_1180 PF00561 alpha/beta hydrolase fold AM1_1182 PF00043 Glutathione S-transferase, C-terminal domain AM1_1182 PF02798 Glutathione S-transferase, N-terminal domain AM1_1185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1185 PF00512 His Kinase A (phospho-acceptor) domain AM1_1185 PF01627 Hpt domain AM1_1185 PF00072 Response regulator receiver domain AM1_1185 PF00989 PAS fold AM1_1185 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM1_1186 PF00072 Response regulator receiver domain AM1_1186 PF00989 PAS fold AM1_1186 PF01627 Hpt domain AM1_1186 PF00512 His Kinase A (phospho-acceptor) domain AM1_1186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1186 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM1_1187 PF03120 NAD-dependent DNA ligase OB-fold domain AM1_1187 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM1_1187 PF12826 Helix-hairpin-helix motif AM1_1187 PF01653 NAD-dependent DNA ligase adenylation domain AM1_1187 PF00533 BRCA1 C Terminus (BRCT) domain AM1_1191 PF00106 short chain dehydrogenase AM1_1194 PF02979 Nitrile hydratase, alpha chain AM1_1196 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_1196 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_1197 PF03781 Sulfatase-modifying factor enzyme 1 AM1_1204 PF05729 NACHT domain AM1_1204 PF00805 Pentapeptide repeats (8 copies) AM1_1204 PF00400 WD domain, G-beta repeat AM1_1205 PF00805 Pentapeptide repeats (8 copies) AM1_1205 PF05729 NACHT domain AM1_1205 PF00400 WD domain, G-beta repeat AM1_1209 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_1221 PF00266 Aminotransferase class-V AM1_1222 PF01458 Uncharacterized protein family (UPF0051) AM1_1223 PF00005 ABC transporter AM1_1224 PF01458 Uncharacterized protein family (UPF0051) AM1_1229 PF00440 Bacterial regulatory proteins, tetR family AM1_1230 PF00043 Glutathione S-transferase, C-terminal domain AM1_1230 PF02798 Glutathione S-transferase, N-terminal domain AM1_1235 PF03400 IS1 transposase AM1_1243 PF00501 AMP-binding enzyme AM1_1243 PF13193 AMP-binding enzyme C-terminal domain AM1_1244 PF00106 short chain dehydrogenase AM1_1245 PF00291 Pyridoxal-phosphate dependent enzyme AM1_1246 PF03734 L,D-transpeptidase catalytic domain AM1_1246 PF01476 LysM domain AM1_1247 PF03462 PCRF domain AM1_1247 PF00472 RF-1 domain AM1_1248 PF01197 Ribosomal protein L31 AM1_1249 PF00380 Ribosomal protein S9/S16 AM1_1250 PF00572 Ribosomal protein L13 AM1_1251 PF01416 tRNA pseudouridine synthase AM1_1252 PF01196 Ribosomal protein L17 AM1_1253 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM1_1253 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM1_1253 PF01000 RNA polymerase Rpb3/RpoA insert domain AM1_1254 PF00411 Ribosomal protein S11 AM1_1255 PF00416 Ribosomal protein S13/S18 AM1_1256 PF02607 B12 binding domain AM1_1256 PF02965 Vitamin B12 dependent methionine synthase, activation domain AM1_1256 PF00809 Pterin binding enzyme AM1_1256 PF02574 Homocysteine S-methyltransferase AM1_1256 PF02310 B12 binding domain AM1_1261 PF03009 Glycerophosphoryl diester phosphodiesterase family AM1_1262 PF03707 Bacterial signalling protein N terminal repeat AM1_1262 PF00990 Diguanylate cyclase, GGDEF domain AM1_1262 PF00563 EAL domain AM1_1263 PF00350 Dynamin family AM1_1264 PF00266 Aminotransferase class-V AM1_1265 PF00472 RF-1 domain AM1_1266 PF01541 GIY-YIG catalytic domain AM1_1268 PF02810 SEC-C motif AM1_1272 PF03055 Retinal pigment epithelial membrane protein AM1_1274 PF01842 ACT domain AM1_1274 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM1_1274 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM1_1279 PF00421 Photosystem II protein AM1_1283 PF04055 Radical SAM superfamily AM1_1305 PF00140 Sigma-70 factor, region 1.2 AM1_1305 PF04545 Sigma-70, region 4 AM1_1305 PF04542 Sigma-70 region 2 AM1_1305 PF04539 Sigma-70 region 3 AM1_1308 PF00004 ATPase family associated with various cellular activities (AAA) AM1_1308 PF17862 AAA+ lid domain AM1_1308 PF06480 FtsH Extracellular AM1_1308 PF01434 Peptidase family M41 AM1_1309 PF00781 Diacylglycerol kinase catalytic domain AM1_1309 PF02142 MGS-like domain AM1_1313 PF07859 alpha/beta hydrolase fold AM1_1315 PF00106 short chain dehydrogenase AM1_1317 PF06719 AraC-type transcriptional regulator N-terminus AM1_1317 PF12833 Helix-turn-helix domain AM1_1322 PF03466 LysR substrate binding domain AM1_1322 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_1324 PF00248 Aldo/keto reductase family AM1_1326 PF01488 Shikimate / quinate 5-dehydrogenase AM1_1326 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AM1_1326 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AM1_1327 PF12146 Serine aminopeptidase, S33 AM1_1334 PF00440 Bacterial regulatory proteins, tetR family AM1_1334 PF17932 Tetracyclin repressor-like, C-terminal domain AM1_1335 PF00465 Iron-containing alcohol dehydrogenase AM1_1336 PF00171 Aldehyde dehydrogenase family AM1_1347 PF00290 Tryptophan synthase alpha chain AM1_1349 PF10716 NADH dehydrogenase transmembrane subunit AM1_1350 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_1350 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AM1_1352 PF00676 Dehydrogenase E1 component AM1_1360 PF01078 Magnesium chelatase, subunit ChlI AM1_1360 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM1_1362 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM1_1362 PF00005 ABC transporter AM1_1363 PF00037 4Fe-4S binding domain AM1_1364 PF00005 ABC transporter AM1_1366 PF04029 2-phosphosulpholactate phosphatase AM1_1368 PF00421 Photosystem II protein AM1_1369 PF00421 Photosystem II protein AM1_1371 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM1_1373 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM1_1373 PF01409 tRNA synthetases class II core domain (F) AM1_1374 PF01207 Dihydrouridine synthase (Dus) AM1_1376 PF01432 Peptidase family M3 AM1_1377 PF00805 Pentapeptide repeats (8 copies) AM1_1377 PF00069 Protein kinase domain AM1_1378 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM1_1378 PF01590 GAF domain AM1_1379 PF00072 Response regulator receiver domain AM1_1379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1380 PF02941 Ferredoxin thioredoxin reductase variable alpha chain AM1_1382 PF00994 Probable molybdopterin binding domain AM1_1382 PF03454 MoeA C-terminal region (domain IV) AM1_1382 PF03453 MoeA N-terminal region (domain I and II) AM1_1384 PF01613 Flavin reductase like domain AM1_1384 PF00258 Flavodoxin AM1_1386 PF00753 Metallo-beta-lactamase superfamily AM1_1386 PF01613 Flavin reductase like domain AM1_1389 PF00793 DAHP synthetase I family AM1_1394 PF10415 Fumarase C C-terminus AM1_1394 PF00206 Lyase AM1_1398 PF03958 Bacterial type II/III secretion system short domain AM1_1398 PF00263 Bacterial type II and III secretion system protein AM1_1399 PF00834 Ribulose-phosphate 3 epimerase family AM1_1400 PF00924 Mechanosensitive ion channel AM1_1400 PF12795 Mechanosensitive ion channel porin domain AM1_1400 PF12794 Mechanosensitive ion channel inner membrane domain 1 AM1_1401 PF00211 Adenylate and Guanylate cyclase catalytic domain AM1_1403 PF03109 ABC1 family AM1_1408 PF07687 Peptidase dimerisation domain AM1_1408 PF01546 Peptidase family M20/M25/M40 AM1_1413 PF14403 Circularly permuted ATP-grasp type 2 AM1_1413 PF04168 A predicted alpha-helical domain with a conserved ER motif. AM1_1414 PF14403 Circularly permuted ATP-grasp type 2 AM1_1416 PF08448 PAS fold AM1_1416 PF00990 Diguanylate cyclase, GGDEF domain AM1_1416 PF00563 EAL domain AM1_1423 PF00350 Dynamin family AM1_1425 PF00400 WD domain, G-beta repeat AM1_1425 PF00931 NB-ARC domain AM1_1426 PF00350 Dynamin family AM1_1427 PF13419 Haloacid dehalogenase-like hydrolase AM1_1428 PF13361 UvrD-like helicase C-terminal domain AM1_1428 PF00580 UvrD/REP helicase N-terminal domain AM1_1430 PF00117 Glutamine amidotransferase class-I AM1_1431 PF01219 Prokaryotic diacylglycerol kinase AM1_1432 PF02130 Uncharacterized protein family UPF0054 AM1_1435 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AM1_1436 PF08669 Glycine cleavage T-protein C-terminal barrel domain AM1_1436 PF01571 Aminomethyltransferase folate-binding domain AM1_1437 PF02605 Photosystem I reaction centre subunit XI AM1_1438 PF03853 YjeF-related protein N-terminus AM1_1438 PF01256 Carbohydrate kinase AM1_1439 PF01701 Photosystem I reaction centre subunit IX / PsaJ AM1_1440 PF02507 Photosystem I reaction centre subunit III AM1_1441 PF00814 Glycoprotease family AM1_1442 PF02535 ZIP Zinc transporter AM1_1443 PF12146 Serine aminopeptidase, S33 AM1_1444 PF00148 Nitrogenase component 1 type Oxidoreductase AM1_1445 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AM1_1449 PF10609 NUBPL iron-transfer P-loop NTPase AM1_1449 PF01883 Iron-sulfur cluster assembly protein AM1_1450 PF01098 Cell cycle protein AM1_1453 PF00575 S1 RNA binding domain AM1_1454 PF02469 Fasciclin domain AM1_1461 PF00202 Aminotransferase class-III AM1_1464 PF00011 Hsp20/alpha crystallin family AM1_1468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1468 PF00512 His Kinase A (phospho-acceptor) domain AM1_1468 PF07689 KaiB domain AM1_1469 PF00196 Bacterial regulatory proteins, luxR family AM1_1469 PF00072 Response regulator receiver domain AM1_1478 PF00005 ABC transporter AM1_1478 PF17912 MalK OB fold domain AM1_1480 PF00072 Response regulator receiver domain AM1_1480 PF00486 Transcriptional regulatory protein, C terminal AM1_1481 PF00512 His Kinase A (phospho-acceptor) domain AM1_1481 PF00672 HAMP domain AM1_1481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1481 PF13426 PAS domain AM1_1487 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_1487 PF13359 DDE superfamily endonuclease AM1_1488 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_1488 PF13359 DDE superfamily endonuclease AM1_1489 PF02325 YGGT family AM1_1493 PF00588 SpoU rRNA Methylase family AM1_1493 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM1_1497 PF03951 Glutamine synthetase, beta-Grasp domain AM1_1497 PF00120 Glutamine synthetase, catalytic domain AM1_1499 PF00512 His Kinase A (phospho-acceptor) domain AM1_1499 PF09308 LuxQ, periplasmic AM1_1499 PF00072 Response regulator receiver domain AM1_1499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1500 PF00072 Response regulator receiver domain AM1_1501 PF00072 Response regulator receiver domain AM1_1501 PF00486 Transcriptional regulatory protein, C terminal AM1_1501 PF01627 Hpt domain AM1_1504 PF03448 MgtE intracellular N domain AM1_1504 PF00571 CBS domain AM1_1504 PF01769 Divalent cation transporter AM1_1506 PF01116 Fructose-bisphosphate aldolase class-II AM1_1508 PF04225 Opacity-associated protein A LysM-like domain AM1_1508 PF01551 Peptidase family M23 AM1_1509 PF00588 SpoU rRNA Methylase family AM1_1510 PF04107 Glutamate-cysteine ligase family 2(GCS2) AM1_1514 PF00977 Histidine biosynthesis protein AM1_1525 PF08245 Mur ligase middle domain AM1_1525 PF02875 Mur ligase family, glutamate ligase domain AM1_1526 PF00107 Zinc-binding dehydrogenase AM1_1526 PF08240 Alcohol dehydrogenase GroES-like domain AM1_1528 PF06838 Methionine gamma-lyase AM1_1529 PF01106 NifU-like domain AM1_1531 PF01597 Glycine cleavage H-protein AM1_1539 PF00148 Nitrogenase component 1 type Oxidoreductase AM1_1539 PF08369 Proto-chlorophyllide reductase 57 kD subunit AM1_1540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM1_1540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM1_1540 PF03129 Anticodon binding domain AM1_1552 PF01638 HxlR-like helix-turn-helix AM1_1553 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM1_1557 PF00072 Response regulator receiver domain AM1_1557 PF09308 LuxQ, periplasmic AM1_1557 PF00512 His Kinase A (phospho-acceptor) domain AM1_1557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1563 PF13411 MerR HTH family regulatory protein AM1_1565 PF07730 Histidine kinase AM1_1566 PF00196 Bacterial regulatory proteins, luxR family AM1_1566 PF00072 Response regulator receiver domain AM1_1569 PF01209 ubiE/COQ5 methyltransferase family AM1_1573 PF00581 Rhodanese-like domain AM1_1578 PF00805 Pentapeptide repeats (8 copies) AM1_1578 PF00069 Protein kinase domain AM1_1584 PF00805 Pentapeptide repeats (8 copies) AM1_1584 PF00069 Protein kinase domain AM1_1585 PF01370 NAD dependent epimerase/dehydratase family AM1_1589 PF00005 ABC transporter AM1_1592 PF00005 ABC transporter AM1_1593 PF00762 Ferrochelatase AM1_1596 PF04539 Sigma-70 region 3 AM1_1596 PF04542 Sigma-70 region 2 AM1_1596 PF00140 Sigma-70 factor, region 1.2 AM1_1596 PF04545 Sigma-70, region 4 AM1_1599 PF01434 Peptidase family M41 AM1_1599 PF17862 AAA+ lid domain AM1_1599 PF00004 ATPase family associated with various cellular activities (AAA) AM1_1599 PF06480 FtsH Extracellular AM1_1601 PF00005 ABC transporter AM1_1608 PF00043 Glutathione S-transferase, C-terminal domain AM1_1608 PF02798 Glutathione S-transferase, N-terminal domain AM1_1610 PF01638 HxlR-like helix-turn-helix AM1_1617 PF03466 LysR substrate binding domain AM1_1617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_1618 PF08240 Alcohol dehydrogenase GroES-like domain AM1_1618 PF00107 Zinc-binding dehydrogenase AM1_1621 PF00378 Enoyl-CoA hydratase/isomerase AM1_1621 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM1_1621 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM1_1622 PF00296 Luciferase-like monooxygenase AM1_1623 PF00106 short chain dehydrogenase AM1_1629 PF00360 Phytochrome region AM1_1629 PF00990 Diguanylate cyclase, GGDEF domain AM1_1629 PF01590 GAF domain AM1_1629 PF00563 EAL domain AM1_1630 PF00330 Aconitase family (aconitate hydratase) AM1_1630 PF11791 Aconitate B N-terminal domain AM1_1630 PF06434 Aconitate hydratase 2 N-terminus AM1_1636 PF00291 Pyridoxal-phosphate dependent enzyme AM1_1638 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AM1_1639 PF00072 Response regulator receiver domain AM1_1639 PF00486 Transcriptional regulatory protein, C terminal AM1_1640 PF01180 Dihydroorotate dehydrogenase AM1_1643 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM1_1643 PF01676 Metalloenzyme superfamily AM1_1644 PF03116 NQR2, RnfD, RnfE family AM1_1645 PF02896 PEP-utilising enzyme, TIM barrel domain AM1_1645 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM1_1645 PF00391 PEP-utilising enzyme, mobile domain AM1_1646 PF00582 Universal stress protein family AM1_1648 PF00072 Response regulator receiver domain AM1_1649 PF11992 Domain of unknown function (DUF3488) AM1_1649 PF13559 Domain of unknown function (DUF4129) AM1_1649 PF01841 Transglutaminase-like superfamily AM1_1650 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_1651 PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N AM1_1654 PF13426 PAS domain AM1_1654 PF00512 His Kinase A (phospho-acceptor) domain AM1_1654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1654 PF00672 HAMP domain AM1_1658 PF17944 Arginine decarboxylase C-terminal helical extension AM1_1658 PF17810 Arginine decarboxylase helical bundle domain AM1_1658 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM1_1660 PF12838 4Fe-4S dicluster domain AM1_1662 PF01645 Conserved region in glutamate synthase AM1_1662 PF00310 Glutamine amidotransferases class-II AM1_1662 PF01493 GXGXG motif AM1_1662 PF04898 Glutamate synthase central domain AM1_1667 PF13230 Glutamine amidotransferases class-II AM1_1670 PF00082 Subtilase family AM1_1675 PF02463 RecF/RecN/SMC N terminal domain AM1_1676 PF00570 HRDC domain AM1_1676 PF01612 3'-5' exonuclease AM1_1683 PF03109 ABC1 family AM1_1685 PF00982 Glycosyltransferase family 20 AM1_1688 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM1_1688 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM1_1691 PF09506 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) AM1_1692 PF04055 Radical SAM superfamily AM1_1692 PF13282 Domain of unknown function (DUF4070) AM1_1692 PF02310 B12 binding domain AM1_1694 PF00781 Diacylglycerol kinase catalytic domain AM1_1697 PF01066 CDP-alcohol phosphatidyltransferase AM1_1698 PF04055 Radical SAM superfamily AM1_1701 PF00919 Uncharacterized protein family UPF0004 AM1_1701 PF04055 Radical SAM superfamily AM1_1701 PF18693 TRAM domain AM1_1702 PF00271 Helicase conserved C-terminal domain AM1_1702 PF00270 DEAD/DEAH box helicase AM1_1703 PF00905 Penicillin binding protein transpeptidase domain AM1_1703 PF00912 Transglycosylase AM1_1705 PF10150 Ribonuclease E/G family AM1_1706 PF01738 Dienelactone hydrolase family AM1_1707 PF00392 Bacterial regulatory proteins, gntR family AM1_1709 PF00092 von Willebrand factor type A domain AM1_1712 PF05193 Peptidase M16 inactive domain AM1_1712 PF00675 Insulinase (Peptidase family M16) AM1_1717 PF00035 Double-stranded RNA binding motif AM1_1717 PF00636 Ribonuclease III domain AM1_1718 PF01578 Cytochrome C assembly protein AM1_1719 PF00684 DnaJ central domain AM1_1719 PF01556 DnaJ C terminal domain AM1_1719 PF00226 DnaJ domain AM1_1720 PF09179 TilS substrate binding domain AM1_1720 PF01171 PP-loop family AM1_1721 PF00072 Response regulator receiver domain AM1_1721 PF00486 Transcriptional regulatory protein, C terminal AM1_1722 PF13419 Haloacid dehalogenase-like hydrolase AM1_1725 PF00563 EAL domain AM1_1725 PF00990 Diguanylate cyclase, GGDEF domain AM1_1725 PF03707 Bacterial signalling protein N terminal repeat AM1_1726 PF00072 Response regulator receiver domain AM1_1727 PF00360 Phytochrome region AM1_1727 PF01590 GAF domain AM1_1727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1727 PF08446 PAS fold AM1_1727 PF00512 His Kinase A (phospho-acceptor) domain AM1_1728 PF12631 MnmE helical domain AM1_1728 PF10396 GTP-binding protein TrmE N-terminus AM1_1728 PF01926 50S ribosome-binding GTPase AM1_1733 PF06968 Biotin and Thiamin Synthesis associated domain AM1_1733 PF04055 Radical SAM superfamily AM1_1735 PF13426 PAS domain AM1_1735 PF00672 HAMP domain AM1_1735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1735 PF00512 His Kinase A (phospho-acceptor) domain AM1_1736 PF00579 tRNA synthetases class I (W and Y) AM1_1737 PF08245 Mur ligase middle domain AM1_1737 PF02875 Mur ligase family, glutamate ligase domain AM1_1743 PF00005 ABC transporter AM1_1743 PF00664 ABC transporter transmembrane region AM1_1744 PF00905 Penicillin binding protein transpeptidase domain AM1_1744 PF17092 Penicillin-binding protein OB-like domain AM1_1744 PF00912 Transglycosylase AM1_1746 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM1_1747 PF10693 Protein of unknown function (DUF2499) AM1_1749 PF03033 Glycosyltransferase family 28 N-terminal domain AM1_1749 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AM1_1751 PF02342 TerD domain AM1_1752 PF08544 GHMP kinases C terminal AM1_1752 PF00288 GHMP kinases N terminal domain AM1_1753 PF00398 Ribosomal RNA adenine dimethylase AM1_1759 PF00664 ABC transporter transmembrane region AM1_1759 PF00005 ABC transporter AM1_1759 PF03412 Peptidase C39 family AM1_1765 PF10396 GTP-binding protein TrmE N-terminus AM1_1765 PF12631 MnmE helical domain AM1_1765 PF01926 50S ribosome-binding GTPase AM1_1766 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM1_1766 PF00529 HlyD membrane-fusion protein of T1SS AM1_1767 PF00873 AcrB/AcrD/AcrF family AM1_1772 PF00384 Molybdopterin oxidoreductase AM1_1772 PF01568 Molydopterin dinucleotide binding domain AM1_1772 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM1_1781 PF00101 Ribulose bisphosphate carboxylase, small chain AM1_1781 PF00004 ATPase family associated with various cellular activities (AAA) AM1_1783 PF00101 Ribulose bisphosphate carboxylase, small chain AM1_1785 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AM1_1785 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AM1_1786 PF00583 Acetyltransferase (GNAT) family AM1_1789 PF00795 Carbon-nitrogen hydrolase AM1_1791 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM1_1793 PF00338 Ribosomal protein S10p/S20e AM1_1794 PF03144 Elongation factor Tu domain 2 AM1_1794 PF00009 Elongation factor Tu GTP binding domain AM1_1794 PF03143 Elongation factor Tu C-terminal domain AM1_1795 PF00679 Elongation factor G C-terminus AM1_1795 PF00009 Elongation factor Tu GTP binding domain AM1_1795 PF03764 Elongation factor G, domain IV AM1_1795 PF03144 Elongation factor Tu domain 2 AM1_1795 PF14492 Elongation Factor G, domain II AM1_1796 PF00177 Ribosomal protein S7p/S5e AM1_1797 PF00164 Ribosomal protein S12/S23 AM1_1798 PF02575 YbaB/EbfC DNA-binding family AM1_1799 PF01565 FAD binding domain AM1_1799 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM1_1800 PF01225 Mur ligase family, catalytic domain AM1_1800 PF08245 Mur ligase middle domain AM1_1800 PF02875 Mur ligase family, glutamate ligase domain AM1_1801 PF00588 SpoU rRNA Methylase family AM1_1806 PF01926 50S ribosome-binding GTPase AM1_1806 PF01018 GTP1/OBG AM1_1808 PF00072 Response regulator receiver domain AM1_1808 PF00486 Transcriptional regulatory protein, C terminal AM1_1809 PF05140 ResB-like family AM1_1811 PF01098 Cell cycle protein AM1_1812 PF13380 CoA binding domain AM1_1812 PF00583 Acetyltransferase (GNAT) family AM1_1812 PF13607 Succinyl-CoA ligase like flavodoxin domain AM1_1814 PF00395 S-layer homology domain AM1_1814 PF04966 Carbohydrate-selective porin, OprB family AM1_1819 PF00005 ABC transporter AM1_1824 PF01926 50S ribosome-binding GTPase AM1_1824 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM1_1828 PF00916 Sulfate permease family AM1_1828 PF01740 STAS domain AM1_1829 PF04542 Sigma-70 region 2 AM1_1829 PF04539 Sigma-70 region 3 AM1_1829 PF00140 Sigma-70 factor, region 1.2 AM1_1829 PF04545 Sigma-70, region 4 AM1_1831 PF00403 Heavy-metal-associated domain AM1_1832 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AM1_1835 PF04228 Putative neutral zinc metallopeptidase AM1_1839 PF00800 Prephenate dehydratase AM1_1839 PF01817 Chorismate mutase type II AM1_1839 PF01842 ACT domain AM1_1841 PF01590 GAF domain AM1_1841 PF00990 Diguanylate cyclase, GGDEF domain AM1_1841 PF00563 EAL domain AM1_1841 PF00360 Phytochrome region AM1_1842 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM1_1844 PF00528 Binding-protein-dependent transport system inner membrane component AM1_1847 PF01709 Transcriptional regulator AM1_1848 PF03808 Glycosyl transferase WecB/TagA/CpsF family AM1_1849 PF00005 ABC transporter AM1_1850 PF18075 FtsX extracellular domain AM1_1850 PF02687 FtsX-like permease family AM1_1854 PF03793 PASTA domain AM1_1854 PF00069 Protein kinase domain AM1_1855 PF00106 short chain dehydrogenase AM1_1858 PF04820 Tryptophan halogenase AM1_1862 PF11016 Protein of unknown function (DUF2854) AM1_1863 PF04461 Protein of unknown function (DUF520) AM1_1864 PF00171 Aldehyde dehydrogenase family AM1_1865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM1_1865 PF00205 Thiamine pyrophosphate enzyme, central domain AM1_1865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM1_1867 PF00478 IMP dehydrogenase / GMP reductase domain AM1_1868 PF00085 Thioredoxin AM1_1870 PF00512 His Kinase A (phospho-acceptor) domain AM1_1870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1870 PF01627 Hpt domain AM1_1870 PF00672 HAMP domain AM1_1870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_1870 PF00072 Response regulator receiver domain AM1_1871 PF00440 Bacterial regulatory proteins, tetR family AM1_1874 PF01965 DJ-1/PfpI family AM1_1876 PF00149 Calcineurin-like phosphoesterase AM1_1876 PF02872 5'-nucleotidase, C-terminal domain AM1_1880 PF00155 Aminotransferase class I and II AM1_1881 PF00581 Rhodanese-like domain AM1_1883 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM1_1883 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM1_1886 PF00005 ABC transporter AM1_1891 PF01757 Acyltransferase family AM1_1893 PF01209 ubiE/COQ5 methyltransferase family AM1_1895 PF05958 tRNA (Uracil-5-)-methyltransferase AM1_1896 PF13439 Glycosyltransferase Family 4 AM1_1901 PF01209 ubiE/COQ5 methyltransferase family AM1_1906 PF00534 Glycosyl transferases group 1 AM1_1908 PF13847 Methyltransferase domain AM1_1908 PF03551 Transcriptional regulator PadR-like family AM1_1910 PF13807 G-rich domain on putative tyrosine kinase AM1_1910 PF13614 AAA domain AM1_1910 PF02706 Chain length determinant protein AM1_1911 PF13439 Glycosyltransferase Family 4 AM1_1911 PF00534 Glycosyl transferases group 1 AM1_1912 PF00005 ABC transporter AM1_1916 PF08007 Cupin superfamily protein AM1_1917 PF02603 HPr Serine kinase N terminus AM1_1917 PF07475 HPr Serine kinase C-terminal domain AM1_1922 PF07687 Peptidase dimerisation domain AM1_1922 PF01546 Peptidase family M20/M25/M40 AM1_1924 PF03747 ADP-ribosylglycohydrolase AM1_1927 PF13546 DDE superfamily endonuclease AM1_1929 PF00483 Nucleotidyl transferase AM1_1930 PF02390 Putative methyltransferase AM1_1933 PF01250 Ribosomal protein S6 AM1_1934 PF10442 FIST C domain AM1_1934 PF00990 Diguanylate cyclase, GGDEF domain AM1_1934 PF08495 FIST N domain AM1_1934 PF00563 EAL domain AM1_1935 PF16166 Chloroplast import apparatus Tic20-like AM1_1936 PF16166 Chloroplast import apparatus Tic20-like AM1_1938 PF00464 Serine hydroxymethyltransferase AM1_1939 PF00953 Glycosyl transferase family 4 AM1_1941 PF18146 Damage-inducible protein CinA KH domain AM1_1941 PF00994 Probable molybdopterin binding domain AM1_1941 PF02464 Competence-damaged protein AM1_1943 PF01220 Dehydroquinase class II AM1_1944 PF16326 ABC transporter C-terminal domain AM1_1944 PF12848 ABC transporter AM1_1944 PF00005 ABC transporter AM1_1946 PF00583 Acetyltransferase (GNAT) family AM1_1946 PF13508 Acetyltransferase (GNAT) domain AM1_1947 PF17871 AAA lid domain AM1_1947 PF02861 Clp amino terminal domain, pathogenicity island component AM1_1947 PF00004 ATPase family associated with various cellular activities (AAA) AM1_1947 PF10431 C-terminal, D2-small domain, of ClpB protein AM1_1947 PF07724 AAA domain (Cdc48 subfamily) AM1_1948 PF16916 Dimerisation domain of Zinc Transporter AM1_1948 PF01545 Cation efflux family AM1_1950 PF03330 Lytic transglycolase AM1_1954 PF01171 PP-loop family AM1_1957 PF02581 Thiamine monophosphate synthase AM1_1957 PF17792 ThiD2 family AM1_1959 PF00762 Ferrochelatase AM1_1960 PF00486 Transcriptional regulatory protein, C terminal AM1_1960 PF00072 Response regulator receiver domain AM1_1962 PF03150 Di-haem cytochrome c peroxidase AM1_1962 PF14376 Haem-binding domain AM1_1962 PF00034 Cytochrome c AM1_1963 PF00072 Response regulator receiver domain AM1_1963 PF00512 His Kinase A (phospho-acceptor) domain AM1_1963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1963 PF09308 LuxQ, periplasmic AM1_1966 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM1_1966 PF00512 His Kinase A (phospho-acceptor) domain AM1_1966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_1968 PF03437 BtpA family AM1_1969 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM1_1972 PF00293 NUDIX domain AM1_1973 PF13676 TIR domain AM1_1977 PF01926 50S ribosome-binding GTPase AM1_1982 PF02577 Bifunctional nuclease AM1_1983 PF00677 Lumazine binding domain AM1_1985 PF12911 N-terminal TM domain of oligopeptide transport permease C AM1_1985 PF00528 Binding-protein-dependent transport system inner membrane component AM1_1987 PF01435 Peptidase family M48 AM1_1988 PF03965 Penicillinase repressor AM1_1993 PF01661 Macro domain AM1_2003 PF01593 Flavin containing amine oxidoreductase AM1_2009 PF01903 CbiX AM1_2011 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AM1_2011 PF03033 Glycosyltransferase family 28 N-terminal domain AM1_2014 PF00171 Aldehyde dehydrogenase family AM1_2018 PF00248 Aldo/keto reductase family AM1_2019 PF05552 Conserved TM helix AM1_2020 PF00152 tRNA synthetases class II (D, K and N) AM1_2020 PF01336 OB-fold nucleic acid binding domain AM1_2021 PF02563 Polysaccharide biosynthesis/export protein AM1_2022 PF08323 Starch synthase catalytic domain AM1_2022 PF00534 Glycosyl transferases group 1 AM1_2023 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_2024 PF05151 Photosystem II reaction centre M protein (PsbM) AM1_2026 PF00421 Photosystem II protein AM1_2027 PF05239 PRC-barrel domain AM1_2027 PF01782 RimM N-terminal domain AM1_2028 PF00155 Aminotransferase class I and II AM1_2033 PF01425 Amidase AM1_2036 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AM1_2043 PF13368 Topoisomerase C-terminal repeat AM1_2043 PF01131 DNA topoisomerase AM1_2043 PF01751 Toprim domain AM1_2044 PF00361 Proton-conducting membrane transporter AM1_2045 PF00175 Oxidoreductase NAD-binding domain AM1_2046 PF01494 FAD binding domain AM1_2048 PF02548 Ketopantoate hydroxymethyltransferase AM1_2049 PF00117 Glutamine amidotransferase class-I AM1_2052 PF02529 Cytochrome B6-F complex subunit 5 AM1_2057 PF00012 Hsp70 protein AM1_2059 PF01370 NAD dependent epimerase/dehydratase family AM1_2060 PF00953 Glycosyl transferase family 4 AM1_2061 PF03447 Homoserine dehydrogenase, NAD binding domain AM1_2061 PF00742 Homoserine dehydrogenase AM1_2061 PF01842 ACT domain AM1_2067 PF00583 Acetyltransferase (GNAT) family AM1_2069 PF02403 Seryl-tRNA synthetase N-terminal domain AM1_2069 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM1_2070 PF01343 Peptidase family S49 AM1_2073 PF12833 Helix-turn-helix domain AM1_2077 PF11066 Protein of unknown function (DUF2867) AM1_2077 PF13460 NAD(P)H-binding AM1_2079 PF00528 Binding-protein-dependent transport system inner membrane component AM1_2079 PF12911 N-terminal TM domain of oligopeptide transport permease C AM1_2080 PF00528 Binding-protein-dependent transport system inner membrane component AM1_2081 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM1_2083 PF00595 PDZ domain AM1_2083 PF03572 Peptidase family S41 AM1_2084 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM1_2085 PF03150 Di-haem cytochrome c peroxidase AM1_2085 PF00034 Cytochrome c AM1_2089 PF12792 CSS motif domain associated with EAL AM1_2089 PF00563 EAL domain AM1_2091 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM1_2091 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AM1_2103 PF02446 4-alpha-glucanotransferase AM1_2104 PF01266 FAD dependent oxidoreductase AM1_2109 PF04542 Sigma-70 region 2 AM1_2109 PF04545 Sigma-70, region 4 AM1_2109 PF04539 Sigma-70 region 3 AM1_2109 PF00140 Sigma-70 factor, region 1.2 AM1_2111 PF01475 Ferric uptake regulator family AM1_2112 PF01740 STAS domain AM1_2112 PF00916 Sulfate permease family AM1_2113 PF00485 Phosphoribulokinase / Uridine kinase family AM1_2114 PF00343 Carbohydrate phosphorylase AM1_2115 PF01641 SelR domain AM1_2117 PF00561 alpha/beta hydrolase fold AM1_2117 PF08386 TAP-like protein AM1_2118 PF10369 Small subunit of acetolactate synthase AM1_2120 PF06596 Photosystem II reaction centre X protein (PsbX) AM1_2121 PF02325 YGGT family AM1_2122 PF02785 Biotin carboxylase C-terminal domain AM1_2122 PF00289 Biotin carboxylase, N-terminal domain AM1_2122 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM1_2123 PF01632 Ribosomal protein L35 AM1_2124 PF00453 Ribosomal protein L20 AM1_2125 PF10431 C-terminal, D2-small domain, of ClpB protein AM1_2125 PF02861 Clp amino terminal domain, pathogenicity island component AM1_2125 PF17871 AAA lid domain AM1_2125 PF07724 AAA domain (Cdc48 subfamily) AM1_2125 PF00004 ATPase family associated with various cellular activities (AAA) AM1_2126 PF00361 Proton-conducting membrane transporter AM1_2127 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM1_2127 PF00361 Proton-conducting membrane transporter AM1_2127 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AM1_2130 PF01434 Peptidase family M41 AM1_2130 PF06480 FtsH Extracellular AM1_2130 PF00004 ATPase family associated with various cellular activities (AAA) AM1_2130 PF17862 AAA+ lid domain AM1_2131 PF00795 Carbon-nitrogen hydrolase AM1_2134 PF00999 Sodium/hydrogen exchanger family AM1_2135 PF00056 lactate/malate dehydrogenase, NAD binding domain AM1_2135 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM1_2136 PF01520 N-acetylmuramoyl-L-alanine amidase AM1_2136 PF11741 AMIN domain AM1_2137 PF11910 Cyanobacterial and plant NDH-1 subunit O AM1_2145 PF12146 Serine aminopeptidase, S33 AM1_2147 PF00501 AMP-binding enzyme AM1_2148 PF00378 Enoyl-CoA hydratase/isomerase AM1_2148 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM1_2148 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM1_2149 PF02803 Thiolase, C-terminal domain AM1_2149 PF00108 Thiolase, N-terminal domain AM1_2150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM1_2150 PF09317 Domain of unknown function (DUF1974) AM1_2150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM1_2151 PF01367 5'-3' exonuclease, C-terminal SAM fold AM1_2151 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM1_2151 PF00476 DNA polymerase family A AM1_2151 PF01612 3'-5' exonuclease AM1_2156 PF00300 Histidine phosphatase superfamily (branch 1) AM1_2157 PF00285 Citrate synthase, C-terminal domain AM1_2158 PF00146 NADH dehydrogenase AM1_2159 PF12838 4Fe-4S dicluster domain AM1_2160 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM1_2161 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM1_2162 PF01694 Rhomboid family AM1_2163 PF17760 UvrA interaction domain AM1_2163 PF17755 UvrA DNA-binding domain AM1_2165 PF01494 FAD binding domain AM1_2166 PF00124 Photosynthetic reaction centre protein AM1_2167 PF01230 HIT domain AM1_2170 PF00483 Nucleotidyl transferase AM1_2171 PF00436 Single-strand binding protein family AM1_2172 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM1_2172 PF02844 Phosphoribosylglycinamide synthetase, N domain AM1_2172 PF02843 Phosphoribosylglycinamide synthetase, C domain AM1_2178 PF01061 ABC-2 type transporter AM1_2178 PF00498 FHA domain AM1_2178 PF00005 ABC transporter AM1_2179 PF03793 PASTA domain AM1_2179 PF00069 Protein kinase domain AM1_2180 PF00528 Binding-protein-dependent transport system inner membrane component AM1_2181 PF01595 Cyclin M transmembrane N-terminal domain AM1_2181 PF00571 CBS domain AM1_2181 PF03471 Transporter associated domain AM1_2182 PF01134 Glucose inhibited division protein A AM1_2182 PF13932 GidA associated domain AM1_2185 PF03062 MBOAT, membrane-bound O-acyltransferase family AM1_2188 PF00483 Nucleotidyl transferase AM1_2189 PF16363 GDP-mannose 4,6 dehydratase AM1_2190 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AM1_2193 PF01380 SIS domain AM1_2193 PF00571 CBS domain AM1_2194 PF02348 Cytidylyltransferase AM1_2195 PF00793 DAHP synthetase I family AM1_2199 PF01757 Acyltransferase family AM1_2217 PF00072 Response regulator receiver domain AM1_2219 PF13538 UvrD-like helicase C-terminal domain AM1_2222 PF07885 Ion channel AM1_2228 PF00795 Carbon-nitrogen hydrolase AM1_2232 PF00586 AIR synthase related protein, N-terminal domain AM1_2232 PF02769 AIR synthase related protein, C-terminal domain AM1_2233 PF01420 Type I restriction modification DNA specificity domain AM1_2236 PF02384 N-6 DNA Methylase AM1_2236 PF12161 HsdM N-terminal domain AM1_2237 PF08463 EcoEI R protein C-terminal AM1_2237 PF00271 Helicase conserved C-terminal domain AM1_2237 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AM1_2237 PF04851 Type III restriction enzyme, res subunit AM1_2239 PF00534 Glycosyl transferases group 1 AM1_2239 PF13439 Glycosyltransferase Family 4 AM1_2240 PF00072 Response regulator receiver domain AM1_2240 PF00196 Bacterial regulatory proteins, luxR family AM1_2251 PF00462 Glutaredoxin AM1_2253 PF02798 Glutathione S-transferase, N-terminal domain AM1_2260 PF03466 LysR substrate binding domain AM1_2260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_2262 PF00266 Aminotransferase class-V AM1_2264 PF01192 RNA polymerase Rpb6 AM1_2283 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AM1_2285 PF03400 IS1 transposase AM1_2289 PF13673 Acetyltransferase (GNAT) domain AM1_2289 PF04229 GrpB protein AM1_2292 PF12169 DNA polymerase III subunits gamma and tau domain III AM1_2293 PF09154 Domain of unknown function (DUF1939) AM1_2293 PF00128 Alpha amylase, catalytic domain AM1_2294 PF00069 Protein kinase domain AM1_2295 PF02915 Rubrerythrin AM1_2296 PF00155 Aminotransferase class I and II AM1_2299 PF00005 ABC transporter AM1_2299 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM1_2301 PF03023 Lipid II flippase MurJ AM1_2302 PF03023 Lipid II flippase MurJ AM1_2305 PF00990 Diguanylate cyclase, GGDEF domain AM1_2305 PF03707 Bacterial signalling protein N terminal repeat AM1_2305 PF00563 EAL domain AM1_2306 PF00106 short chain dehydrogenase AM1_2307 PF00719 Inorganic pyrophosphatase AM1_2309 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM1_2314 PF09334 tRNA synthetases class I (M) AM1_2314 PF00133 tRNA synthetases class I (I, L, M and V) AM1_2314 PF08264 Anticodon-binding domain of tRNA AM1_2318 PF00005 ABC transporter AM1_2321 PF03129 Anticodon binding domain AM1_2321 PF04073 Aminoacyl-tRNA editing domain AM1_2321 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM1_2325 PF01699 Sodium/calcium exchanger protein AM1_2330 PF00574 Clp protease AM1_2331 PF00574 Clp protease AM1_2335 PF00005 ABC transporter AM1_2336 PF00583 Acetyltransferase (GNAT) family AM1_2336 PF01047 MarR family AM1_2337 PF01479 S4 domain AM1_2337 PF00849 RNA pseudouridylate synthase AM1_2338 PF02811 PHP domain AM1_2340 PF04542 Sigma-70 region 2 AM1_2340 PF04539 Sigma-70 region 3 AM1_2340 PF04545 Sigma-70, region 4 AM1_2340 PF00140 Sigma-70 factor, region 1.2 AM1_2341 PF17746 SfsA N-terminal OB domain AM1_2341 PF03749 Sugar fermentation stimulation protein RE domain AM1_2342 PF04055 Radical SAM superfamily AM1_2344 PF06508 Queuosine biosynthesis protein QueC AM1_2347 PF02896 PEP-utilising enzyme, TIM barrel domain AM1_2347 PF00391 PEP-utilising enzyme, mobile domain AM1_2347 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM1_2348 PF10674 Protein of unknown function (DUF2488) AM1_2349 PF01678 Diaminopimelate epimerase AM1_2352 PF08525 Opacity-associated protein A N-terminal motif AM1_2352 PF01551 Peptidase family M23 AM1_2352 PF01476 LysM domain AM1_2354 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AM1_2357 PF01494 FAD binding domain AM1_2358 PF02261 Aspartate decarboxylase AM1_2361 PF17863 AAA lid domain AM1_2361 PF07726 ATPase family associated with various cellular activities (AAA) AM1_2365 PF16363 GDP-mannose 4,6 dehydratase AM1_2366 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM1_2366 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM1_2366 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM1_2367 PF01427 D-ala-D-ala dipeptidase AM1_2373 PF00919 Uncharacterized protein family UPF0004 AM1_2373 PF01938 TRAM domain AM1_2373 PF04055 Radical SAM superfamily AM1_2375 PF01380 SIS domain AM1_2376 PF00502 Phycobilisome protein AM1_2380 PF03109 ABC1 family AM1_2383 PF02867 Ribonucleotide reductase, barrel domain AM1_2383 PF00317 Ribonucleotide reductase, all-alpha domain AM1_2383 PF03477 ATP cone domain AM1_2387 PF00563 EAL domain AM1_2387 PF00498 FHA domain AM1_2387 PF00990 Diguanylate cyclase, GGDEF domain AM1_2389 PF01726 LexA DNA binding domain AM1_2389 PF00717 Peptidase S24-like AM1_2396 PF13546 DDE superfamily endonuclease AM1_2401 PF00929 Exonuclease AM1_2401 PF02811 PHP domain AM1_2401 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM1_2401 PF14579 Helix-hairpin-helix motif AM1_2401 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM1_2404 PF13333 Integrase core domain AM1_2404 PF00665 Integrase core domain AM1_2404 PF13276 HTH-like domain AM1_2407 PF13808 DDE_Tnp_1-associated AM1_2407 PF01609 Transposase DDE domain AM1_2410 PF01555 DNA methylase AM1_2413 PF02779 Transketolase, pyrimidine binding domain AM1_2413 PF00456 Transketolase, thiamine diphosphate binding domain AM1_2413 PF02780 Transketolase, C-terminal domain AM1_2415 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AM1_2417 PF00291 Pyridoxal-phosphate dependent enzyme AM1_2419 PF06750 Bacterial Peptidase A24 N-terminal domain AM1_2419 PF01478 Type IV leader peptidase family AM1_2423 PF02527 rRNA small subunit methyltransferase G AM1_2424 PF13640 2OG-Fe(II) oxygenase superfamily AM1_2424 PF18331 PKHD-type hydroxylase C-terminal domain AM1_2428 PF03441 FAD binding domain of DNA photolyase AM1_2428 PF00875 DNA photolyase AM1_2431 PF06452 Carbohydrate family 9 binding domain-like AM1_2431 PF02018 Carbohydrate binding domain AM1_2431 PF00331 Glycosyl hydrolase family 10 AM1_2431 PF00395 S-layer homology domain AM1_2436 PF17862 AAA+ lid domain AM1_2436 PF01434 Peptidase family M41 AM1_2436 PF00004 ATPase family associated with various cellular activities (AAA) AM1_2436 PF06480 FtsH Extracellular AM1_2440 PF00012 Hsp70 protein AM1_2444 PF08543 Phosphomethylpyrimidine kinase AM1_2449 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_2449 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_2449 PF01610 Transposase AM1_2452 PF00072 Response regulator receiver domain AM1_2452 PF00211 Adenylate and Guanylate cyclase catalytic domain AM1_2455 PF02698 DUF218 domain AM1_2457 PF00223 Photosystem I psaA/psaB protein AM1_2458 PF00223 Photosystem I psaA/psaB protein AM1_2461 PF00270 DEAD/DEAH box helicase AM1_2461 PF00271 Helicase conserved C-terminal domain AM1_2461 PF17191 RecG wedge domain AM1_2463 PF00107 Zinc-binding dehydrogenase AM1_2463 PF08240 Alcohol dehydrogenase GroES-like domain AM1_2464 PF01061 ABC-2 type transporter AM1_2464 PF00005 ABC transporter AM1_2464 PF00498 FHA domain AM1_2465 PF01523 Putative modulator of DNA gyrase AM1_2466 PF01523 Putative modulator of DNA gyrase AM1_2467 PF00437 Type II/IV secretion system protein AM1_2467 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM1_2468 PF13439 Glycosyltransferase Family 4 AM1_2468 PF00534 Glycosyl transferases group 1 AM1_2477 PF13276 HTH-like domain AM1_2477 PF00665 Integrase core domain AM1_2477 PF13333 Integrase core domain AM1_2480 PF00873 AcrB/AcrD/AcrF family AM1_2491 PF13439 Glycosyltransferase Family 4 AM1_2491 PF00534 Glycosyl transferases group 1 AM1_2492 PF02016 LD-carboxypeptidase N-terminal domain AM1_2492 PF17676 LD-carboxypeptidase C-terminal domain AM1_2495 PF00085 Thioredoxin AM1_2496 PF00361 Proton-conducting membrane transporter AM1_2496 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AM1_2496 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM1_2497 PF00361 Proton-conducting membrane transporter AM1_2497 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AM1_2501 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM1_2501 PF06827 Zinc finger found in FPG and IleRS AM1_2501 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM1_2502 PF07728 AAA domain (dynein-related subfamily) AM1_2503 PF02427 Photosystem I reaction centre subunit IV / PsaE AM1_2504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_2504 PF00512 His Kinase A (phospho-acceptor) domain AM1_2504 PF07689 KaiB domain AM1_2505 PF00400 WD domain, G-beta repeat AM1_2506 PF00069 Protein kinase domain AM1_2512 PF01336 OB-fold nucleic acid binding domain AM1_2512 PF02811 PHP domain AM1_2512 PF14579 Helix-hairpin-helix motif AM1_2512 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM1_2512 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM1_2514 PF04607 Region found in RelA / SpoT proteins AM1_2514 PF13291 ACT domain AM1_2514 PF02824 TGS domain AM1_2515 PF00092 von Willebrand factor type A domain AM1_2517 PF07714 Protein tyrosine kinase AM1_2518 PF11741 AMIN domain AM1_2518 PF01520 N-acetylmuramoyl-L-alanine amidase AM1_2520 PF01694 Rhomboid family AM1_2527 PF00483 Nucleotidyl transferase AM1_2528 PF00717 Peptidase S24-like AM1_2529 PF11798 IMS family HHH motif AM1_2529 PF13438 Domain of unknown function (DUF4113) AM1_2529 PF00817 impB/mucB/samB family AM1_2529 PF11799 impB/mucB/samB family C-terminal domain AM1_2531 PF00248 Aldo/keto reductase family AM1_2535 PF00004 ATPase family associated with various cellular activities (AAA) AM1_2535 PF17866 AAA lid domain AM1_2537 PF07298 NnrU protein AM1_2542 PF00873 AcrB/AcrD/AcrF family AM1_2543 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM1_2545 PF03551 Transcriptional regulator PadR-like family AM1_2545 PF10400 Virulence activator alpha C-term AM1_2553 PF03358 NADPH-dependent FMN reductase AM1_2555 PF00582 Universal stress protein family AM1_2555 PF00999 Sodium/hydrogen exchanger family AM1_2556 PF12773 Double zinc ribbon AM1_2556 PF00498 FHA domain AM1_2557 PF07690 Major Facilitator Superfamily AM1_2558 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AM1_2558 PF01502 Phosphoribosyl-AMP cyclohydrolase AM1_2560 PF16697 Inner membrane component of T3SS, cytoplasmic domain AM1_2561 PF00085 Thioredoxin AM1_2562 PF10410 DnaB-helicase binding domain of primase AM1_2562 PF08275 DNA primase catalytic core, N-terminal domain AM1_2562 PF01807 CHC2 zinc finger AM1_2566 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM1_2571 PF00529 HlyD membrane-fusion protein of T1SS AM1_2571 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM1_2573 PF12704 MacB-like periplasmic core domain AM1_2573 PF00005 ABC transporter AM1_2573 PF02687 FtsX-like permease family AM1_2574 PF10502 Signal peptidase, peptidase S26 AM1_2580 PF04542 Sigma-70 region 2 AM1_2580 PF04545 Sigma-70, region 4 AM1_2583 PF00145 C-5 cytosine-specific DNA methylase AM1_2589 PF00305 Lipoxygenase AM1_2590 PF13546 DDE superfamily endonuclease AM1_2593 PF13546 DDE superfamily endonuclease AM1_2595 PF01820 D-ala D-ala ligase N-terminus AM1_2595 PF07478 D-ala D-ala ligase C-terminus AM1_2597 PF04294 VanW like protein AM1_2604 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AM1_2612 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AM1_2612 PF02769 AIR synthase related protein, C-terminal domain AM1_2612 PF00586 AIR synthase related protein, N-terminal domain AM1_2613 PF13537 Glutamine amidotransferase domain AM1_2613 PF00156 Phosphoribosyl transferase domain AM1_2614 PF01926 50S ribosome-binding GTPase AM1_2615 PF00133 tRNA synthetases class I (I, L, M and V) AM1_2615 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase AM1_2615 PF08264 Anticodon-binding domain of tRNA AM1_2615 PF10458 Valyl tRNA synthetase tRNA binding arm AM1_2616 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_2617 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM1_2620 PF02224 Cytidylate kinase AM1_2620 PF02569 Pantoate-beta-alanine ligase AM1_2621 PF00155 Aminotransferase class I and II AM1_2630 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits AM1_2630 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit AM1_2631 PF14870 Photosynthesis system II assembly factor YCF48 AM1_2632 PF00301 Rubredoxin AM1_2633 PF01926 50S ribosome-binding GTPase AM1_2633 PF06071 Protein of unknown function (DUF933) AM1_2634 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM1_2634 PF01276 Orn/Lys/Arg decarboxylase, major domain AM1_2635 PF05175 Methyltransferase small domain AM1_2637 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AM1_2638 PF12773 Double zinc ribbon AM1_2638 PF00498 FHA domain AM1_2639 PF00069 Protein kinase domain AM1_2640 PF12146 Serine aminopeptidase, S33 AM1_2644 PF03764 Elongation factor G, domain IV AM1_2644 PF00009 Elongation factor Tu GTP binding domain AM1_2644 PF03144 Elongation factor Tu domain 2 AM1_2644 PF14492 Elongation Factor G, domain II AM1_2644 PF00679 Elongation factor G C-terminus AM1_2649 PF02254 TrkA-N domain AM1_2649 PF00999 Sodium/hydrogen exchanger family AM1_2650 PF01975 Survival protein SurE AM1_2651 PF12706 Beta-lactamase superfamily domain AM1_2652 PF06574 FAD synthetase AM1_2652 PF01687 Riboflavin kinase AM1_2653 PF07726 ATPase family associated with various cellular activities (AAA) AM1_2653 PF17863 AAA lid domain AM1_2655 PF01134 Glucose inhibited division protein A AM1_2658 PF13417 Glutathione S-transferase, N-terminal domain AM1_2660 PF00266 Aminotransferase class-V AM1_2663 PF03466 LysR substrate binding domain AM1_2663 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_2675 PF00106 short chain dehydrogenase AM1_2682 PF03808 Glycosyl transferase WecB/TagA/CpsF family AM1_2683 PF01464 Transglycosylase SLT domain AM1_2683 PF10145 Phage-related minor tail protein AM1_2683 PF01551 Peptidase family M23 AM1_2687 PF00563 EAL domain AM1_2687 PF00990 Diguanylate cyclase, GGDEF domain AM1_2687 PF00498 FHA domain AM1_2688 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_2690 PF11805 Protein of unknown function (DUF3326) AM1_2695 PF00830 Ribosomal L28 family AM1_2697 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_2698 PF00578 AhpC/TSA family AM1_2698 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM1_2699 PF00535 Glycosyl transferase family 2 AM1_2702 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AM1_2702 PF01266 FAD dependent oxidoreductase AM1_2705 PF01209 ubiE/COQ5 methyltransferase family AM1_2706 PF16363 GDP-mannose 4,6 dehydratase AM1_2714 PF13439 Glycosyltransferase Family 4 AM1_2715 PF01522 Polysaccharide deacetylase AM1_2720 PF00350 Dynamin family AM1_2721 PF13545 Crp-like helix-turn-helix domain AM1_2723 PF01022 Bacterial regulatory protein, arsR family AM1_2726 PF04480 Protein of unknown function (DUF559) AM1_2730 PF12452 Protein of unknown function (DUF3685) AM1_2730 PF00072 Response regulator receiver domain AM1_2731 PF08719 Domain of unknown function (DUF1768) AM1_2735 PF01906 Putative heavy-metal-binding AM1_2743 PF02754 Cysteine-rich domain AM1_2743 PF13183 4Fe-4S dicluster domain AM1_2744 PF02913 FAD linked oxidases, C-terminal domain AM1_2744 PF01565 FAD binding domain AM1_2748 PF00501 AMP-binding enzyme AM1_2748 PF13193 AMP-binding enzyme C-terminal domain AM1_2748 PF16177 Acetyl-coenzyme A synthetase N-terminus AM1_2751 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AM1_2752 PF13649 Methyltransferase domain AM1_2755 PF04607 Region found in RelA / SpoT proteins AM1_2758 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM1_2766 PF02463 RecF/RecN/SMC N terminal domain AM1_2777 PF12697 Alpha/beta hydrolase family AM1_2778 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_2783 PF04955 HupE / UreJ protein AM1_2784 PF00890 FAD binding domain AM1_2784 PF02910 Fumarate reductase flavoprotein C-term AM1_2787 PF00440 Bacterial regulatory proteins, tetR family AM1_2787 PF08359 YsiA-like protein, C-terminal region AM1_2788 PF05656 Protein of unknown function (DUF805) AM1_2790 PF00232 Glycosyl hydrolase family 1 AM1_2791 PF00561 alpha/beta hydrolase fold AM1_2792 PF00069 Protein kinase domain AM1_2796 PF07238 PilZ domain AM1_2796 PF00535 Glycosyl transferase family 2 AM1_2796 PF03170 Bacterial cellulose synthase subunit AM1_2796 PF03552 Cellulose synthase AM1_2797 PF00072 Response regulator receiver domain AM1_2800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_2800 PF00672 HAMP domain AM1_2800 PF00989 PAS fold AM1_2800 PF18698 Histidine kinase sensor domain AM1_2800 PF00512 His Kinase A (phospho-acceptor) domain AM1_2805 PF06470 SMC proteins Flexible Hinge Domain AM1_2805 PF02463 RecF/RecN/SMC N terminal domain AM1_2807 PF13614 AAA domain AM1_2808 PF02706 Chain length determinant protein AM1_2808 PF13614 AAA domain AM1_2808 PF13807 G-rich domain on putative tyrosine kinase AM1_2813 PF03480 Bacterial extracellular solute-binding protein, family 7 AM1_2814 PF02837 Glycosyl hydrolases family 2, sugar binding domain AM1_2814 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AM1_2814 PF00703 Glycosyl hydrolases family 2 AM1_2814 PF16353 Domain of unknown function(DUF4981) AM1_2814 PF02929 Beta galactosidase small chain AM1_2821 PF00805 Pentapeptide repeats (8 copies) AM1_2821 PF00069 Protein kinase domain AM1_2822 PF00069 Protein kinase domain AM1_2822 PF00805 Pentapeptide repeats (8 copies) AM1_2823 PF13476 AAA domain AM1_2827 PF00515 Tetratricopeptide repeat AM1_2827 PF13176 Tetratricopeptide repeat AM1_2833 PF00491 Arginase family AM1_2834 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AM1_2835 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_2837 PF00528 Binding-protein-dependent transport system inner membrane component AM1_2838 PF00005 ABC transporter AM1_2840 PF03702 Anhydro-N-acetylmuramic acid kinase AM1_2841 PF00069 Protein kinase domain AM1_2844 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM1_2844 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM1_2849 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term AM1_2849 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus AM1_2850 PF00355 Rieske [2Fe-2S] domain AM1_2853 PF08245 Mur ligase middle domain AM1_2853 PF01225 Mur ligase family, catalytic domain AM1_2853 PF02875 Mur ligase family, glutamate ligase domain AM1_2854 PF01138 3' exoribonuclease family, domain 1 AM1_2854 PF03725 3' exoribonuclease family, domain 2 AM1_2856 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AM1_2857 PF00692 dUTPase AM1_2858 PF13640 2OG-Fe(II) oxygenase superfamily AM1_2859 PF02571 Precorrin-6x reductase CbiJ/CobK AM1_2860 PF00563 EAL domain AM1_2860 PF00990 Diguanylate cyclase, GGDEF domain AM1_2860 PF00498 FHA domain AM1_2861 PF01245 Ribosomal protein L19 AM1_2863 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AM1_2864 PF00467 KOW motif AM1_2864 PF02357 Transcription termination factor nusG AM1_2865 PF00298 Ribosomal protein L11, RNA binding domain AM1_2865 PF03946 Ribosomal protein L11, N-terminal domain AM1_2866 PF00687 Ribosomal protein L1p/L10e family AM1_2867 PF00466 Ribosomal protein L10 AM1_2868 PF16320 Ribosomal protein L7/L12 dimerisation domain AM1_2868 PF00542 Ribosomal protein L7/L12 C-terminal domain AM1_2869 PF04472 Cell division protein SepF AM1_2872 PF01061 ABC-2 type transporter AM1_2872 PF00005 ABC transporter AM1_2872 PF00498 FHA domain AM1_2873 PF13737 Transposase DDE domain AM1_2875 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AM1_2876 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM1_2877 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AM1_2877 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AM1_2878 PF10128 Glucose-6-phosphate dehydrogenase subunit AM1_2878 PF01471 Putative peptidoglycan binding domain AM1_2881 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM1_2881 PF07685 CobB/CobQ-like glutamine amidotransferase domain AM1_2883 PF01330 RuvA N terminal domain AM1_2883 PF07499 RuvA, C-terminal domain AM1_2885 PF07690 Major Facilitator Superfamily AM1_2886 PF03793 PASTA domain AM1_2886 PF00069 Protein kinase domain AM1_2887 PF12697 Alpha/beta hydrolase family AM1_2889 PF00124 Photosynthetic reaction centre protein AM1_2891 PF01368 DHH family AM1_2891 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AM1_2891 PF17768 RecJ OB domain AM1_2891 PF02272 DHHA1 domain AM1_2893 PF01169 Uncharacterized protein family UPF0016 AM1_2894 PF01169 Uncharacterized protein family UPF0016 AM1_2897 PF08865 Domain of unknown function (DUF1830) AM1_2900 PF01784 NIF3 (NGG1p interacting factor 3) AM1_2904 PF13302 Acetyltransferase (GNAT) domain AM1_2908 PF02441 Flavoprotein AM1_2913 PF00480 ROK family AM1_2914 PF00117 Glutamine amidotransferase class-I AM1_2914 PF06418 CTP synthase N-terminus AM1_2915 PF02542 YgbB family AM1_2921 PF01595 Cyclin M transmembrane N-terminal domain AM1_2921 PF03471 Transporter associated domain AM1_2921 PF00571 CBS domain AM1_2922 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) AM1_2923 PF00085 Thioredoxin AM1_2935 PF07884 Vitamin K epoxide reductase family AM1_2936 PF00174 Oxidoreductase molybdopterin binding domain AM1_2937 PF01783 Ribosomal L32p protein family AM1_2939 PF00990 Diguanylate cyclase, GGDEF domain AM1_2939 PF07694 5TMR of 5TMR-LYT AM1_2940 PF00578 AhpC/TSA family AM1_2941 PF00175 Oxidoreductase NAD-binding domain AM1_2944 PF00528 Binding-protein-dependent transport system inner membrane component AM1_2945 PF00156 Phosphoribosyl transferase domain AM1_2952 PF13359 DDE superfamily endonuclease AM1_2952 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_2953 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_2953 PF13359 DDE superfamily endonuclease AM1_2956 PF00583 Acetyltransferase (GNAT) family AM1_2959 PF00805 Pentapeptide repeats (8 copies) AM1_2959 PF00069 Protein kinase domain AM1_2960 PF00528 Binding-protein-dependent transport system inner membrane component AM1_2961 PF00528 Binding-protein-dependent transport system inner membrane component AM1_2962 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM1_2962 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM1_2965 PF18029 Glyoxalase-like domain AM1_2970 PF13732 Domain of unknown function (DUF4162) AM1_2970 PF00005 ABC transporter AM1_2972 PF01694 Rhomboid family AM1_2979 PF00654 Voltage gated chloride channel AM1_2981 PF13419 Haloacid dehalogenase-like hydrolase AM1_2984 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM1_2984 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM1_2985 PF07690 Major Facilitator Superfamily AM1_2986 PF00395 S-layer homology domain AM1_2986 PF04966 Carbohydrate-selective porin, OprB family AM1_2987 PF01568 Molydopterin dinucleotide binding domain AM1_2987 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM1_2987 PF00384 Molybdopterin oxidoreductase AM1_2989 PF00883 Cytosol aminopeptidase family, catalytic domain AM1_2989 PF02789 Cytosol aminopeptidase family, N-terminal domain AM1_2990 PF00881 Nitroreductase family AM1_2994 PF13545 Crp-like helix-turn-helix domain AM1_2994 PF00027 Cyclic nucleotide-binding domain AM1_2996 PF00563 EAL domain AM1_2996 PF00990 Diguanylate cyclase, GGDEF domain AM1_2996 PF03707 Bacterial signalling protein N terminal repeat AM1_2999 PF04972 BON domain AM1_2999 PF00691 OmpA family AM1_3002 PF01964 Radical SAM ThiC family AM1_3004 PF09157 Pseudouridine synthase II TruB, C-terminal AM1_3004 PF16198 tRNA pseudouridylate synthase B C-terminal domain AM1_3004 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM1_3013 PF02657 Fe-S metabolism associated domain AM1_3014 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_3014 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_3018 PF00440 Bacterial regulatory proteins, tetR family AM1_3018 PF13977 BetI-type transcriptional repressor, C-terminal AM1_3026 PF05114 Protein of unknown function (DUF692) AM1_3031 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_3031 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_3034 PF00072 Response regulator receiver domain AM1_3034 PF00196 Bacterial regulatory proteins, luxR family AM1_3035 PF01965 DJ-1/PfpI family AM1_3038 PF01475 Ferric uptake regulator family AM1_3040 PF02421 Ferrous iron transport protein B AM1_3040 PF07670 Nucleoside recognition AM1_3040 PF07664 Ferrous iron transport protein B C terminus AM1_3046 PF00990 Diguanylate cyclase, GGDEF domain AM1_3049 PF13545 Crp-like helix-turn-helix domain AM1_3052 PF00101 Ribulose bisphosphate carboxylase, small chain AM1_3053 PF01502 Phosphoribosyl-AMP cyclohydrolase AM1_3055 PF03129 Anticodon binding domain AM1_3055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM1_3055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM1_3056 PF01227 GTP cyclohydrolase I AM1_3057 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_3057 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_3064 PF05973 Phage derived protein Gp49-like (DUF891) AM1_3067 PF01381 Helix-turn-helix AM1_3070 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_3070 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_3071 PF00490 Delta-aminolevulinic acid dehydratase AM1_3072 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AM1_3072 PF01297 Zinc-uptake complex component A periplasmic AM1_3073 PF00005 ABC transporter AM1_3074 PF00950 ABC 3 transport family AM1_3075 PF01545 Cation efflux family AM1_3076 PF03009 Glycerophosphoryl diester phosphodiesterase family AM1_3079 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM1_3081 PF02033 Ribosome-binding factor A AM1_3082 PF01915 Glycosyl hydrolase family 3 C-terminal domain AM1_3082 PF00933 Glycosyl hydrolase family 3 N terminal domain AM1_3085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM1_3085 PF00205 Thiamine pyrophosphate enzyme, central domain AM1_3085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM1_3087 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM1_3087 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AM1_3089 PF02391 MoaE protein AM1_3092 PF02096 60Kd inner membrane protein AM1_3094 PF00825 Ribonuclease P AM1_3095 PF11638 DnaA N-terminal domain AM1_3095 PF08299 Bacterial dnaA protein helix-turn-helix AM1_3095 PF00308 Bacterial dnaA protein AM1_3096 PF00712 DNA polymerase III beta subunit, N-terminal domain AM1_3096 PF02767 DNA polymerase III beta subunit, central domain AM1_3096 PF02768 DNA polymerase III beta subunit, C-terminal domain AM1_3099 PF00535 Glycosyl transferase family 2 AM1_3100 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM1_3101 PF00072 Response regulator receiver domain AM1_3101 PF00486 Transcriptional regulatory protein, C terminal AM1_3102 PF03055 Retinal pigment epithelial membrane protein AM1_3103 PF03092 BT1 family AM1_3106 PF00106 short chain dehydrogenase AM1_3110 PF00171 Aldehyde dehydrogenase family AM1_3111 PF01661 Macro domain AM1_3113 PF03989 DNA gyrase C-terminal domain, beta-propeller AM1_3113 PF00521 DNA gyrase/topoisomerase IV, subunit A AM1_3118 PF02350 UDP-N-acetylglucosamine 2-epimerase AM1_3120 PF00437 Type II/IV secretion system protein AM1_3121 PF07689 KaiB domain AM1_3123 PF02163 Peptidase family M50 AM1_3124 PF07478 D-ala D-ala ligase C-terminus AM1_3124 PF01820 D-ala D-ala ligase N-terminus AM1_3127 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AM1_3129 PF02522 Aminoglycoside 3-N-acetyltransferase AM1_3140 PF10502 Signal peptidase, peptidase S26 AM1_3141 PF10502 Signal peptidase, peptidase S26 AM1_3143 PF00920 Dehydratase family AM1_3147 PF00400 WD domain, G-beta repeat AM1_3147 PF00931 NB-ARC domain AM1_3158 PF00543 Nitrogen regulatory protein P-II AM1_3159 PF00805 Pentapeptide repeats (8 copies) AM1_3159 PF00069 Protein kinase domain AM1_3160 PF08402 TOBE domain AM1_3160 PF00005 ABC transporter AM1_3161 PF00436 Single-strand binding protein family AM1_3162 PF01594 AI-2E family transporter AM1_3163 PF02091 Glycyl-tRNA synthetase alpha subunit AM1_3167 PF01475 Ferric uptake regulator family AM1_3169 PF00483 Nucleotidyl transferase AM1_3173 PF01521 Iron-sulphur cluster biosynthesis AM1_3177 PF12697 Alpha/beta hydrolase family AM1_3181 PF00639 PPIC-type PPIASE domain AM1_3181 PF09312 SurA N-terminal domain AM1_3182 PF00664 ABC transporter transmembrane region AM1_3182 PF00005 ABC transporter AM1_3182 PF03412 Peptidase C39 family AM1_3187 PF13411 MerR HTH family regulatory protein AM1_3187 PF06445 GyrI-like small molecule binding domain AM1_3189 PF00072 Response regulator receiver domain AM1_3189 PF00211 Adenylate and Guanylate cyclase catalytic domain AM1_3191 PF00069 Protein kinase domain AM1_3194 PF00722 Glycosyl hydrolases family 16 AM1_3194 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM1_3195 PF13439 Glycosyltransferase Family 4 AM1_3195 PF00534 Glycosyl transferases group 1 AM1_3196 PF01740 STAS domain AM1_3196 PF00916 Sulfate permease family AM1_3197 PF00999 Sodium/hydrogen exchanger family AM1_3199 PF00361 Proton-conducting membrane transporter AM1_3207 PF13806 Rieske-like [2Fe-2S] domain AM1_3209 PF18267 Rubredoxin NAD+ reductase C-terminal domain AM1_3209 PF04324 BFD-like [2Fe-2S] binding domain AM1_3209 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_3209 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM1_3209 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM1_3211 PF00069 Protein kinase domain AM1_3214 PF00118 TCP-1/cpn60 chaperonin family AM1_3218 PF13180 PDZ domain AM1_3225 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_3230 PF00486 Transcriptional regulatory protein, C terminal AM1_3230 PF00072 Response regulator receiver domain AM1_3232 PF00762 Ferrochelatase AM1_3234 PF04545 Sigma-70, region 4 AM1_3234 PF00140 Sigma-70 factor, region 1.2 AM1_3234 PF04542 Sigma-70 region 2 AM1_3234 PF04539 Sigma-70 region 3 AM1_3237 PF17862 AAA+ lid domain AM1_3237 PF06480 FtsH Extracellular AM1_3237 PF01434 Peptidase family M41 AM1_3237 PF00004 ATPase family associated with various cellular activities (AAA) AM1_3240 PF04143 Sulphur transport AM1_3241 PF00486 Transcriptional regulatory protein, C terminal AM1_3241 PF00072 Response regulator receiver domain AM1_3242 PF06965 Na+/H+ antiporter 1 AM1_3242 PF13462 Thioredoxin AM1_3244 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM1_3244 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM1_3249 PF03358 NADPH-dependent FMN reductase AM1_3250 PF00364 Biotin-requiring enzyme AM1_3250 PF00561 alpha/beta hydrolase fold AM1_3254 PF00989 PAS fold AM1_3254 PF00512 His Kinase A (phospho-acceptor) domain AM1_3254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_3255 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_3259 PF00400 WD domain, G-beta repeat AM1_3259 PF00931 NB-ARC domain AM1_3266 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM1_3266 PF17287 POTRA domain AM1_3266 PF08479 POTRA domain, ShlB-type AM1_3270 PF00872 Transposase, Mutator family AM1_3271 PF00872 Transposase, Mutator family AM1_3272 PF00872 Transposase, Mutator family AM1_3280 PF00936 BMC domain AM1_3283 PF13737 Transposase DDE domain AM1_3285 PF00563 EAL domain AM1_3285 PF00990 Diguanylate cyclase, GGDEF domain AM1_3285 PF03707 Bacterial signalling protein N terminal repeat AM1_3291 PF00266 Aminotransferase class-V AM1_3300 PF01042 Endoribonuclease L-PSP AM1_3303 PF01266 FAD dependent oxidoreductase AM1_3303 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AM1_3305 PF02633 Creatinine amidohydrolase AM1_3306 PF01494 FAD binding domain AM1_3308 PF01566 Natural resistance-associated macrophage protein AM1_3308 PF03358 NADPH-dependent FMN reductase AM1_3309 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM1_3309 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM1_3309 PF00205 Thiamine pyrophosphate enzyme, central domain AM1_3312 PF05762 VWA domain containing CoxE-like protein AM1_3314 PF14251 Domain of unknown function (DUF4346) AM1_3315 PF00224 Pyruvate kinase, barrel domain AM1_3315 PF02887 Pyruvate kinase, alpha/beta domain AM1_3315 PF00391 PEP-utilising enzyme, mobile domain AM1_3316 PF02082 Transcriptional regulator AM1_3326 PF03186 CobD/Cbib protein AM1_3327 PF03562 MltA specific insert domain AM1_3327 PF06725 3D domain AM1_3329 PF13419 Haloacid dehalogenase-like hydrolase AM1_3330 PF08448 PAS fold AM1_3330 PF00990 Diguanylate cyclase, GGDEF domain AM1_3330 PF00563 EAL domain AM1_3332 PF02686 Glu-tRNAGln amidotransferase C subunit AM1_3333 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM1_3337 PF00069 Protein kinase domain AM1_3338 PF01497 Periplasmic binding protein AM1_3343 PF02609 Exonuclease VII small subunit AM1_3344 PF13742 OB-fold nucleic acid binding domain AM1_3344 PF02601 Exonuclease VII, large subunit AM1_3345 PF00905 Penicillin binding protein transpeptidase domain AM1_3345 PF00912 Transglycosylase AM1_3347 PF01479 S4 domain AM1_3347 PF00579 tRNA synthetases class I (W and Y) AM1_3348 PF00005 ABC transporter AM1_3349 PF01032 FecCD transport family AM1_3350 PF01032 FecCD transport family AM1_3352 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_3357 PF01497 Periplasmic binding protein AM1_3358 PF00593 TonB dependent receptor AM1_3358 PF07715 TonB-dependent Receptor Plug Domain AM1_3362 PF00421 Photosystem II protein AM1_3364 PF00421 Photosystem II protein AM1_3366 PF00421 Photosystem II protein AM1_3369 PF00127 Copper binding proteins, plastocyanin/azurin family AM1_3372 PF00274 Fructose-bisphosphate aldolase class-I AM1_3374 PF04072 Leucine carboxyl methyltransferase AM1_3382 PF12852 Cupin AM1_3382 PF12833 Helix-turn-helix domain AM1_3383 PF00593 TonB dependent receptor AM1_3383 PF07715 TonB-dependent Receptor Plug Domain AM1_3385 PF01596 O-methyltransferase AM1_3387 PF01494 FAD binding domain AM1_3391 PF01596 O-methyltransferase AM1_3393 PF00593 TonB dependent receptor AM1_3393 PF07715 TonB-dependent Receptor Plug Domain AM1_3396 PF12833 Helix-turn-helix domain AM1_3397 PF01497 Periplasmic binding protein AM1_3398 PF07715 TonB-dependent Receptor Plug Domain AM1_3398 PF00593 TonB dependent receptor AM1_3401 PF01497 Periplasmic binding protein AM1_3403 PF07715 TonB-dependent Receptor Plug Domain AM1_3403 PF00593 TonB dependent receptor AM1_3406 PF12833 Helix-turn-helix domain AM1_3407 PF00593 TonB dependent receptor AM1_3407 PF07715 TonB-dependent Receptor Plug Domain AM1_3409 PF00210 Ferritin-like domain AM1_3410 PF02472 Biopolymer transport protein ExbD/TolR AM1_3411 PF01618 MotA/TolQ/ExbB proton channel family AM1_3414 PF01032 FecCD transport family AM1_3415 PF00005 ABC transporter AM1_3416 PF01497 Periplasmic binding protein AM1_3419 PF13545 Crp-like helix-turn-helix domain AM1_3424 PF08240 Alcohol dehydrogenase GroES-like domain AM1_3424 PF00107 Zinc-binding dehydrogenase AM1_3427 PF00889 Elongation factor TS AM1_3428 PF00318 Ribosomal protein S2 AM1_3429 PF04452 RNA methyltransferase AM1_3435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM1_3435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM1_3435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM1_3435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM1_3437 PF00905 Penicillin binding protein transpeptidase domain AM1_3437 PF03717 Penicillin-binding Protein dimerisation domain AM1_3444 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AM1_3444 PF17770 Ribonuclease J C-terminal domain AM1_3444 PF00753 Metallo-beta-lactamase superfamily AM1_3445 PF00701 Dihydrodipicolinate synthetase family AM1_3447 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM1_3447 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM1_3448 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM1_3448 PF05698 Bacterial trigger factor protein (TF) C-terminus AM1_3448 PF05697 Bacterial trigger factor protein (TF) AM1_3449 PF00574 Clp protease AM1_3450 PF06689 ClpX C4-type zinc finger AM1_3450 PF10431 C-terminal, D2-small domain, of ClpB protein AM1_3450 PF07724 AAA domain (Cdc48 subfamily) AM1_3451 PF00561 alpha/beta hydrolase fold AM1_3452 PF01119 DNA mismatch repair protein, C-terminal domain AM1_3452 PF08676 MutL C terminal dimerisation domain AM1_3454 PF08448 PAS fold AM1_3454 PF00990 Diguanylate cyclase, GGDEF domain AM1_3454 PF00563 EAL domain AM1_3455 PF01713 Smr domain AM1_3455 PF00488 MutS domain V AM1_3461 PF00486 Transcriptional regulatory protein, C terminal AM1_3461 PF00072 Response regulator receiver domain AM1_3462 PF13411 MerR HTH family regulatory protein AM1_3464 PF16656 Purple acid Phosphatase, N-terminal domain AM1_3464 PF00149 Calcineurin-like phosphoesterase AM1_3465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_3465 PF00672 HAMP domain AM1_3465 PF00512 His Kinase A (phospho-acceptor) domain AM1_3466 PF00072 Response regulator receiver domain AM1_3466 PF00486 Transcriptional regulatory protein, C terminal AM1_3466 PF01627 Hpt domain AM1_3467 PF04072 Leucine carboxyl methyltransferase AM1_3468 PF00128 Alpha amylase, catalytic domain AM1_3470 PF00484 Carbonic anhydrase AM1_3472 PF00474 Sodium:solute symporter family AM1_3475 PF03400 IS1 transposase AM1_3481 PF00072 Response regulator receiver domain AM1_3481 PF00486 Transcriptional regulatory protein, C terminal AM1_3488 PF00005 ABC transporter AM1_3489 PF00528 Binding-protein-dependent transport system inner membrane component AM1_3490 PF00528 Binding-protein-dependent transport system inner membrane component AM1_3491 PF12849 PBP superfamily domain AM1_3492 PF01022 Bacterial regulatory protein, arsR family AM1_3497 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AM1_3497 PF00400 WD domain, G-beta repeat AM1_3498 PF01590 GAF domain AM1_3498 PF00990 Diguanylate cyclase, GGDEF domain AM1_3498 PF00360 Phytochrome region AM1_3498 PF00563 EAL domain AM1_3499 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal AM1_3499 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal AM1_3500 PF16655 PhoD-like phosphatase, N-terminal domain AM1_3500 PF09423 PhoD-like phosphatase AM1_3509 PF00230 Major intrinsic protein AM1_3511 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM1_3513 PF09335 SNARE associated Golgi protein AM1_3514 PF00698 Acyl transferase domain AM1_3515 PF13193 AMP-binding enzyme C-terminal domain AM1_3515 PF01553 Acyltransferase AM1_3515 PF00501 AMP-binding enzyme AM1_3517 PF01327 Polypeptide deformylase AM1_3519 PF02397 Bacterial sugar transferase AM1_3527 PF17284 Spermidine synthase tetramerisation domain AM1_3528 PF00491 Arginase family AM1_3531 PF01425 Amidase AM1_3533 PF00909 Ammonium Transporter Family AM1_3534 PF00909 Ammonium Transporter Family AM1_3540 PF04294 VanW like protein AM1_3544 PF08486 Stage II sporulation protein AM1_3550 PF00154 recA bacterial DNA recombination protein AM1_3551 PF16655 PhoD-like phosphatase, N-terminal domain AM1_3551 PF09423 PhoD-like phosphatase AM1_3557 PF00106 short chain dehydrogenase AM1_3563 PF00067 Cytochrome P450 AM1_3564 PF00305 Lipoxygenase AM1_3565 PF00069 Protein kinase domain AM1_3565 PF03793 PASTA domain AM1_3566 PF00072 Response regulator receiver domain AM1_3566 PF00158 Sigma-54 interaction domain AM1_3566 PF02954 Bacterial regulatory protein, Fis family AM1_3567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_3567 PF00512 His Kinase A (phospho-acceptor) domain AM1_3567 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM1_3568 PF11849 Domain of unknown function (DUF3369) AM1_3569 PF01590 GAF domain AM1_3569 PF00360 Phytochrome region AM1_3569 PF00990 Diguanylate cyclase, GGDEF domain AM1_3569 PF00563 EAL domain AM1_3570 PF01170 Putative RNA methylase family UPF0020 AM1_3570 PF02926 THUMP domain AM1_3571 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM1_3571 PF02817 e3 binding domain AM1_3571 PF00364 Biotin-requiring enzyme AM1_3574 PF01592 NifU-like N terminal domain AM1_3575 PF10726 Protein of function (DUF2518) AM1_3576 PF00465 Iron-containing alcohol dehydrogenase AM1_3577 PF00155 Aminotransferase class I and II AM1_3578 PF02386 Cation transport protein AM1_3579 PF02080 TrkA-C domain AM1_3579 PF02254 TrkA-N domain AM1_3580 PF01926 50S ribosome-binding GTPase AM1_3580 PF07650 KH domain AM1_3583 PF00300 Histidine phosphatase superfamily (branch 1) AM1_3589 PF00815 Histidinol dehydrogenase AM1_3590 PF01649 Ribosomal protein S20 AM1_3591 PF01026 TatD related DNase AM1_3592 PF00562 RNA polymerase Rpb2, domain 6 AM1_3592 PF04565 RNA polymerase Rpb2, domain 3 AM1_3592 PF04560 RNA polymerase Rpb2, domain 7 AM1_3592 PF10385 RNA polymerase beta subunit external 1 domain AM1_3592 PF04563 RNA polymerase beta subunit AM1_3592 PF04561 RNA polymerase Rpb2, domain 2 AM1_3593 PF04997 RNA polymerase Rpb1, domain 1 AM1_3593 PF00623 RNA polymerase Rpb1, domain 2 AM1_3593 PF04983 RNA polymerase Rpb1, domain 3 AM1_3594 PF04998 RNA polymerase Rpb1, domain 5 AM1_3594 PF05000 RNA polymerase Rpb1, domain 4 AM1_3594 PF04983 RNA polymerase Rpb1, domain 3 AM1_3595 PF00561 alpha/beta hydrolase fold AM1_3596 PF01554 MatE AM1_3599 PF05690 Thiazole biosynthesis protein ThiG AM1_3600 PF08281 Sigma-70, region 4 AM1_3600 PF04542 Sigma-70 region 2 AM1_3602 PF01040 UbiA prenyltransferase family AM1_3608 PF00534 Glycosyl transferases group 1 AM1_3608 PF13439 Glycosyltransferase Family 4 AM1_3609 PF01370 NAD dependent epimerase/dehydratase family AM1_3611 PF08241 Methyltransferase domain AM1_3616 PF00550 Phosphopantetheine attachment site AM1_3622 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM1_3623 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_3624 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM1_3624 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM1_3625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM1_3625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM1_3625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM1_3626 PF02719 Polysaccharide biosynthesis protein AM1_3629 PF13546 DDE superfamily endonuclease AM1_3631 PF01016 Ribosomal L27 protein AM1_3632 PF00829 Ribosomal prokaryotic L21 protein AM1_3638 PF01594 AI-2E family transporter AM1_3642 PF08502 LeuA allosteric (dimerisation) domain AM1_3642 PF00682 HMGL-like AM1_3645 PF00069 Protein kinase domain AM1_3645 PF00805 Pentapeptide repeats (8 copies) AM1_3646 PF01063 Amino-transferase class IV AM1_3649 PF00128 Alpha amylase, catalytic domain AM1_3652 PF01252 Signal peptidase (SPase) II AM1_3653 PF02632 BioY family AM1_3654 PF00421 Photosystem II protein AM1_3655 PF00421 Photosystem II protein AM1_3657 PF04029 2-phosphosulpholactate phosphatase AM1_3658 PF01207 Dihydrouridine synthase (Dus) AM1_3661 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM1_3664 PF02570 Precorrin-8X methylmutase AM1_3665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM1_3667 PF13085 2Fe-2S iron-sulfur cluster binding domain AM1_3669 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM1_3669 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM1_3672 PF00459 Inositol monophosphatase family AM1_3674 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus AM1_3676 PF00106 short chain dehydrogenase AM1_3679 PF01475 Ferric uptake regulator family AM1_3680 PF08534 Redoxin AM1_3681 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM1_3681 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_3692 PF01593 Flavin containing amine oxidoreductase AM1_3695 PF00872 Transposase, Mutator family AM1_3701 PF13546 DDE superfamily endonuclease AM1_3704 PF00149 Calcineurin-like phosphoesterase AM1_3707 PF13640 2OG-Fe(II) oxygenase superfamily AM1_3707 PF18331 PKHD-type hydroxylase C-terminal domain AM1_3711 PF00360 Phytochrome region AM1_3711 PF00563 EAL domain AM1_3711 PF01590 GAF domain AM1_3711 PF00990 Diguanylate cyclase, GGDEF domain AM1_3712 PF08719 Domain of unknown function (DUF1768) AM1_3715 PF00141 Peroxidase AM1_3716 PF00582 Universal stress protein family AM1_3717 PF01740 STAS domain AM1_3717 PF00916 Sulfate permease family AM1_3720 PF00005 ABC transporter AM1_3724 PF00005 ABC transporter AM1_3724 PF09383 NIL domain AM1_3725 PF00072 Response regulator receiver domain AM1_3725 PF00486 Transcriptional regulatory protein, C terminal AM1_3729 PF03741 Integral membrane protein TerC family AM1_3731 PF02146 Sir2 family AM1_3733 PF00334 Nucleoside diphosphate kinase AM1_3734 PF01569 PAP2 superfamily AM1_3737 PF03781 Sulfatase-modifying factor enzyme 1 AM1_3738 PF03781 Sulfatase-modifying factor enzyme 1 AM1_3739 PF01627 Hpt domain AM1_3739 PF00072 Response regulator receiver domain AM1_3739 PF01584 CheW-like domain AM1_3739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_3740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM1_3740 PF00672 HAMP domain AM1_3740 PF12729 Four helix bundle sensory module for signal transduction AM1_3742 PF00072 Response regulator receiver domain AM1_3742 PF00486 Transcriptional regulatory protein, C terminal AM1_3743 PF00072 Response regulator receiver domain AM1_3743 PF14332 Domain of unknown function (DUF4388) AM1_3746 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM1_3746 PF03120 NAD-dependent DNA ligase OB-fold domain AM1_3746 PF01653 NAD-dependent DNA ligase adenylation domain AM1_3746 PF00533 BRCA1 C Terminus (BRCT) domain AM1_3746 PF12826 Helix-hairpin-helix motif AM1_3751 PF02557 D-alanyl-D-alanine carboxypeptidase AM1_3752 PF00069 Protein kinase domain AM1_3753 PF13378 Enolase C-terminal domain-like AM1_3754 PF13193 AMP-binding enzyme C-terminal domain AM1_3754 PF00501 AMP-binding enzyme AM1_3757 PF01381 Helix-turn-helix AM1_3759 PF00487 Fatty acid desaturase AM1_3770 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_3771 PF06298 Photosystem II protein Y (PsbY) AM1_3776 PF04055 Radical SAM superfamily AM1_3779 PF00005 ABC transporter AM1_3779 PF00664 ABC transporter transmembrane region AM1_3786 PF01029 NusB family AM1_3787 PF02881 SRP54-type protein, helical bundle domain AM1_3787 PF00448 SRP54-type protein, GTPase domain AM1_3789 PF07228 Stage II sporulation protein E (SpoIIE) AM1_3789 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain AM1_3790 PF05195 Aminopeptidase P, N-terminal domain AM1_3790 PF00557 Metallopeptidase family M24 AM1_3794 PF01925 Sulfite exporter TauE/SafE AM1_3796 PF01433 Peptidase family M1 domain AM1_3796 PF11838 ERAP1-like C-terminal domain AM1_3804 PF01894 Uncharacterised protein family UPF0047 AM1_3808 PF08460 Bacterial SH3 domain AM1_3808 PF01551 Peptidase family M23 AM1_3810 PF01063 Amino-transferase class IV AM1_3814 PF02683 Cytochrome C biogenesis protein transmembrane region AM1_3814 PF17991 Thioredoxin like C-terminal domain AM1_3814 PF00578 AhpC/TSA family AM1_3815 PF00480 ROK family AM1_3822 PF00994 Probable molybdopterin binding domain AM1_3823 PF01209 ubiE/COQ5 methyltransferase family AM1_3827 PF00400 WD domain, G-beta repeat AM1_3827 PF00931 NB-ARC domain AM1_3831 PF00881 Nitroreductase family AM1_3832 PF13419 Haloacid dehalogenase-like hydrolase AM1_3833 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AM1_3833 PF12706 Beta-lactamase superfamily domain AM1_3837 PF01968 Hydantoinase/oxoprolinase AM1_3837 PF05378 Hydantoinase/oxoprolinase N-terminal region AM1_3840 PF03471 Transporter associated domain AM1_3840 PF00999 Sodium/hydrogen exchanger family AM1_3840 PF02080 TrkA-C domain AM1_3841 PF13419 Haloacid dehalogenase-like hydrolase AM1_3844 PF00196 Bacterial regulatory proteins, luxR family AM1_3844 PF00072 Response regulator receiver domain AM1_3845 PF16658 Class II release factor RF3, C-terminal domain AM1_3845 PF00009 Elongation factor Tu GTP binding domain AM1_3846 PF01627 Hpt domain AM1_3846 PF00512 His Kinase A (phospho-acceptor) domain AM1_3846 PF00072 Response regulator receiver domain AM1_3846 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_3846 PF00672 HAMP domain AM1_3848 PF03773 Predicted permease AM1_3850 PF01702 Queuine tRNA-ribosyltransferase AM1_3851 PF02533 Photosystem II 4 kDa reaction centre component AM1_3853 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM1_3853 PF01872 RibD C-terminal domain AM1_3854 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM1_3854 PF00588 SpoU rRNA Methylase family AM1_3860 PF13737 Transposase DDE domain AM1_3862 PF00665 Integrase core domain AM1_3862 PF13333 Integrase core domain AM1_3862 PF13276 HTH-like domain AM1_3868 PF08494 DEAD/H associated AM1_3868 PF00270 DEAD/DEAH box helicase AM1_3868 PF00271 Helicase conserved C-terminal domain AM1_3869 PF01590 GAF domain AM1_3869 PF00360 Phytochrome region AM1_3869 PF08446 PAS fold AM1_3869 PF00512 His Kinase A (phospho-acceptor) domain AM1_3869 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_3870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_3870 PF01590 GAF domain AM1_3870 PF00512 His Kinase A (phospho-acceptor) domain AM1_3870 PF08446 PAS fold AM1_3870 PF00360 Phytochrome region AM1_3871 PF00072 Response regulator receiver domain AM1_3875 PF08448 PAS fold AM1_3875 PF00990 Diguanylate cyclase, GGDEF domain AM1_3875 PF00563 EAL domain AM1_3877 PF00684 DnaJ central domain AM1_3877 PF01556 DnaJ C terminal domain AM1_3877 PF00226 DnaJ domain AM1_3880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM1_3880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM1_3882 PF17848 Acetyl-coA carboxylase zinc finger domain AM1_3882 PF01039 Carboxyl transferase domain AM1_3885 PF14495 Cytochrome c-550 domain AM1_3886 PF14495 Cytochrome c-550 domain AM1_3889 PF03992 Antibiotic biosynthesis monooxygenase AM1_3892 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase AM1_3896 PF02617 ATP-dependent Clp protease adaptor protein ClpS AM1_3903 PF00305 Lipoxygenase AM1_3904 PF00390 Malic enzyme, N-terminal domain AM1_3904 PF03949 Malic enzyme, NAD binding domain AM1_3907 PF08264 Anticodon-binding domain of tRNA AM1_3907 PF06827 Zinc finger found in FPG and IleRS AM1_3907 PF00133 tRNA synthetases class I (I, L, M and V) AM1_3912 PF00069 Protein kinase domain AM1_3912 PF00805 Pentapeptide repeats (8 copies) AM1_3916 PF00072 Response regulator receiver domain AM1_3916 PF00486 Transcriptional regulatory protein, C terminal AM1_3917 PF02132 RecR protein AM1_3917 PF13662 Toprim domain AM1_3918 PF00730 HhH-GPD superfamily base excision DNA repair protein AM1_3918 PF14815 NUDIX domain AM1_3924 PF13546 DDE superfamily endonuclease AM1_3925 PF04545 Sigma-70, region 4 AM1_3925 PF00140 Sigma-70 factor, region 1.2 AM1_3925 PF04539 Sigma-70 region 3 AM1_3925 PF04542 Sigma-70 region 2 AM1_3926 PF01648 4'-phosphopantetheinyl transferase superfamily AM1_3927 PF00258 Flavodoxin AM1_3927 PF01613 Flavin reductase like domain AM1_3932 PF00364 Biotin-requiring enzyme AM1_3934 PF09285 Elongation factor P, C-terminal AM1_3934 PF08207 Elongation factor P (EF-P) KOW-like domain AM1_3934 PF01132 Elongation factor P (EF-P) OB domain AM1_3935 PF03707 Bacterial signalling protein N terminal repeat AM1_3935 PF00990 Diguanylate cyclase, GGDEF domain AM1_3935 PF00563 EAL domain AM1_3937 PF00486 Transcriptional regulatory protein, C terminal AM1_3937 PF00072 Response regulator receiver domain AM1_3938 PF06055 Exopolysaccharide synthesis, ExoD AM1_3940 PF05221 S-adenosyl-L-homocysteine hydrolase AM1_3940 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM1_3943 PF00294 pfkB family carbohydrate kinase AM1_3944 PF03900 Porphobilinogen deaminase, C-terminal domain AM1_3944 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM1_3946 PF16363 GDP-mannose 4,6 dehydratase AM1_3947 PF00365 Phosphofructokinase AM1_3948 PF01726 LexA DNA binding domain AM1_3948 PF00717 Peptidase S24-like AM1_3951 PF00400 WD domain, G-beta repeat AM1_3951 PF00931 NB-ARC domain AM1_3952 PF00069 Protein kinase domain AM1_3954 PF02021 Uncharacterised protein family UPF0102 AM1_3956 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM1_3957 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_3965 PF02910 Fumarate reductase flavoprotein C-term AM1_3965 PF00890 FAD binding domain AM1_3966 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) AM1_3967 PF00211 Adenylate and Guanylate cyclase catalytic domain AM1_3967 PF00672 HAMP domain AM1_3968 PF01370 NAD dependent epimerase/dehydratase family AM1_3971 PF01145 SPFH domain / Band 7 family AM1_3975 PF00528 Binding-protein-dependent transport system inner membrane component AM1_3977 PF01435 Peptidase family M48 AM1_3978 PF00113 Enolase, C-terminal TIM barrel domain AM1_3978 PF03952 Enolase, N-terminal domain AM1_3979 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM1_3981 PF00395 S-layer homology domain AM1_3981 PF04966 Carbohydrate-selective porin, OprB family AM1_3982 PF04055 Radical SAM superfamily AM1_3983 PF01479 S4 domain AM1_3983 PF00163 Ribosomal protein S4/S9 N-terminal domain AM1_3984 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM1_3988 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_3989 PF00459 Inositol monophosphatase family AM1_3990 PF00684 DnaJ central domain AM1_3990 PF01556 DnaJ C terminal domain AM1_3990 PF00226 DnaJ domain AM1_3991 PF13393 Histidyl-tRNA synthetase AM1_3992 PF01634 ATP phosphoribosyltransferase AM1_3997 PF00155 Aminotransferase class I and II AM1_3998 PF04012 PspA/IM30 family AM1_4001 PF00248 Aldo/keto reductase family AM1_4002 PF00285 Citrate synthase, C-terminal domain AM1_4009 PF00664 ABC transporter transmembrane region AM1_4009 PF00005 ABC transporter AM1_4009 PF03412 Peptidase C39 family AM1_4012 PF12697 Alpha/beta hydrolase family AM1_4017 PF02567 Phenazine biosynthesis-like protein AM1_4019 PF00534 Glycosyl transferases group 1 AM1_4019 PF13439 Glycosyltransferase Family 4 AM1_4021 PF13439 Glycosyltransferase Family 4 AM1_4021 PF00534 Glycosyl transferases group 1 AM1_4028 PF00005 ABC transporter AM1_4031 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain AM1_4033 PF01494 FAD binding domain AM1_4036 PF00069 Protein kinase domain AM1_4041 PF11266 Long-chain fatty aldehyde decarbonylase AM1_4042 PF01488 Shikimate / quinate 5-dehydrogenase AM1_4047 PF01209 ubiE/COQ5 methyltransferase family AM1_4050 PF01124 MAPEG family AM1_4052 PF08148 DSHCT (NUC185) domain AM1_4052 PF00271 Helicase conserved C-terminal domain AM1_4052 PF00270 DEAD/DEAH box helicase AM1_4053 PF00072 Response regulator receiver domain AM1_4053 PF00486 Transcriptional regulatory protein, C terminal AM1_4054 PF01627 Hpt domain AM1_4054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4054 PF02895 Signal transducing histidine kinase, homodimeric domain AM1_4054 PF01584 CheW-like domain AM1_4054 PF07194 P2 response regulator binding domain AM1_4055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM1_4055 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM1_4057 PF00072 Response regulator receiver domain AM1_4059 PF03167 Uracil DNA glycosylase superfamily AM1_4061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4061 PF00512 His Kinase A (phospho-acceptor) domain AM1_4063 PF13180 PDZ domain AM1_4063 PF02163 Peptidase family M50 AM1_4064 PF00730 HhH-GPD superfamily base excision DNA repair protein AM1_4064 PF00633 Helix-hairpin-helix motif AM1_4065 PF00253 Ribosomal protein S14p/S29e AM1_4068 PF01467 Cytidylyltransferase-like AM1_4070 PF09190 DALR domain AM1_4070 PF01406 tRNA synthetases class I (C) catalytic domain AM1_4072 PF00563 EAL domain AM1_4072 PF00498 FHA domain AM1_4072 PF00990 Diguanylate cyclase, GGDEF domain AM1_4074 PF13180 PDZ domain AM1_4075 PF16193 AAA C-terminal domain AM1_4075 PF05496 Holliday junction DNA helicase RuvB P-loop domain AM1_4075 PF12002 MgsA AAA+ ATPase C terminal AM1_4078 PF00872 Transposase, Mutator family AM1_4084 PF00124 Photosynthetic reaction centre protein AM1_4085 PF07687 Peptidase dimerisation domain AM1_4085 PF01546 Peptidase family M20/M25/M40 AM1_4086 PF03601 Conserved hypothetical protein 698 AM1_4091 PF01797 Transposase IS200 like AM1_4097 PF00005 ABC transporter AM1_4098 PF00886 Ribosomal protein S16 AM1_4100 PF02562 PhoH-like protein AM1_4101 PF08241 Methyltransferase domain AM1_4106 PF01746 tRNA (Guanine-1)-methyltransferase AM1_4107 PF01351 Ribonuclease HII AM1_4108 PF00696 Amino acid kinase family AM1_4118 PF13460 NAD(P)H-binding AM1_4121 PF17674 HHH domain AM1_4121 PF00575 S1 RNA binding domain AM1_4121 PF09371 Tex-like protein N-terminal domain AM1_4121 PF16921 Tex protein YqgF-like domain AM1_4125 PF02503 Polyphosphate kinase middle domain AM1_4125 PF13090 Polyphosphate kinase C-terminal domain 2 AM1_4125 PF17941 Polyphosphate kinase C-terminal domain 1 AM1_4125 PF13089 Polyphosphate kinase N-terminal domain AM1_4128 PF01464 Transglycosylase SLT domain AM1_4128 PF14718 Soluble lytic murein transglycosylase L domain AM1_4132 PF08460 Bacterial SH3 domain AM1_4132 PF01551 Peptidase family M23 AM1_4135 PF00557 Metallopeptidase family M24 AM1_4135 PF05195 Aminopeptidase P, N-terminal domain AM1_4136 PF13439 Glycosyltransferase Family 4 AM1_4136 PF00534 Glycosyl transferases group 1 AM1_4137 PF00448 SRP54-type protein, GTPase domain AM1_4137 PF02978 Signal peptide binding domain AM1_4137 PF02881 SRP54-type protein, helical bundle domain AM1_4138 PF00583 Acetyltransferase (GNAT) family AM1_4139 PF03737 Aldolase/RraA AM1_4144 PF00892 EamA-like transporter family AM1_4147 PF00270 DEAD/DEAH box helicase AM1_4147 PF00271 Helicase conserved C-terminal domain AM1_4147 PF02559 CarD-like/TRCF domain AM1_4147 PF17757 UvrB interaction domain AM1_4147 PF03461 TRCF domain AM1_4149 PF03167 Uracil DNA glycosylase superfamily AM1_4153 PF00892 EamA-like transporter family AM1_4160 PF00892 EamA-like transporter family AM1_4161 PF00067 Cytochrome P450 AM1_4171 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM1_4171 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM1_4174 PF03466 LysR substrate binding domain AM1_4174 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_4182 PF12804 MobA-like NTP transferase domain AM1_4182 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_4182 PF03479 Plants and Prokaryotes Conserved (PCC) domain AM1_4183 PF02308 MgtC family AM1_4189 PF01593 Flavin containing amine oxidoreductase AM1_4200 PF01740 STAS domain AM1_4201 PF04371 Porphyromonas-type peptidyl-arginine deiminase AM1_4208 PF00188 Cysteine-rich secretory protein family AM1_4210 PF12034 Domain of unknown function (DUF3520) AM1_4210 PF12450 von Willebrand factor AM1_4210 PF00092 von Willebrand factor type A domain AM1_4211 PF01022 Bacterial regulatory protein, arsR family AM1_4212 PF13369 Transglutaminase-like superfamily AM1_4214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4214 PF00512 His Kinase A (phospho-acceptor) domain AM1_4214 PF00672 HAMP domain AM1_4214 PF00989 PAS fold AM1_4215 PF09367 CpeS-like protein AM1_4216 PF17876 Cold shock domain AM1_4216 PF08206 Ribonuclease B OB domain AM1_4216 PF00575 S1 RNA binding domain AM1_4216 PF00773 RNB domain AM1_4217 PF01895 PhoU domain AM1_4221 PF00535 Glycosyl transferase family 2 AM1_4231 PF13546 DDE superfamily endonuclease AM1_4234 PF00764 Arginosuccinate synthase AM1_4236 PF02405 Permease MlaE AM1_4240 PF02660 Glycerol-3-phosphate acyltransferase AM1_4245 PF07685 CobB/CobQ-like glutamine amidotransferase domain AM1_4247 PF03819 MazG nucleotide pyrophosphohydrolase domain AM1_4264 PF13359 DDE superfamily endonuclease AM1_4264 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_4269 PF04294 VanW like protein AM1_4270 PF00005 ABC transporter AM1_4270 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM1_4271 PF11862 Domain of unknown function (DUF3382) AM1_4271 PF02653 Branched-chain amino acid transport system / permease component AM1_4272 PF00342 Phosphoglucose isomerase AM1_4273 PF00498 FHA domain AM1_4273 PF12401 Protein of unknown function (DUF2662) AM1_4275 PF10990 Protein of unknown function (DUF2809) AM1_4276 PF03883 Peroxide stress protein YaaA AM1_4282 PF01627 Hpt domain AM1_4282 PF18415 Histidine kinase receptor ArcB trans-membrane domain AM1_4282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4282 PF00512 His Kinase A (phospho-acceptor) domain AM1_4282 PF00072 Response regulator receiver domain AM1_4282 PF00989 PAS fold AM1_4285 PF00664 ABC transporter transmembrane region AM1_4285 PF00005 ABC transporter AM1_4295 PF00400 WD domain, G-beta repeat AM1_4295 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AM1_4297 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM1_4301 PF01209 ubiE/COQ5 methyltransferase family AM1_4304 PF00072 Response regulator receiver domain AM1_4304 PF00196 Bacterial regulatory proteins, luxR family AM1_4305 PF00326 Prolyl oligopeptidase family AM1_4306 PF00905 Penicillin binding protein transpeptidase domain AM1_4312 PF08241 Methyltransferase domain AM1_4314 PF01590 GAF domain AM1_4314 PF00990 Diguanylate cyclase, GGDEF domain AM1_4314 PF00360 Phytochrome region AM1_4314 PF00563 EAL domain AM1_4318 PF00069 Protein kinase domain AM1_4319 PF00805 Pentapeptide repeats (8 copies) AM1_4319 PF00069 Protein kinase domain AM1_4320 PF00069 Protein kinase domain AM1_4321 PF00069 Protein kinase domain AM1_4322 PF03793 PASTA domain AM1_4322 PF00069 Protein kinase domain AM1_4323 PF00069 Protein kinase domain AM1_4324 PF01926 50S ribosome-binding GTPase AM1_4324 PF12631 MnmE helical domain AM1_4324 PF10396 GTP-binding protein TrmE N-terminus AM1_4329 PF05175 Methyltransferase small domain AM1_4331 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AM1_4331 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AM1_4335 PF04480 Protein of unknown function (DUF559) AM1_4340 PF03055 Retinal pigment epithelial membrane protein AM1_4341 PF05193 Peptidase M16 inactive domain AM1_4341 PF00675 Insulinase (Peptidase family M16) AM1_4342 PF05860 haemagglutination activity domain AM1_4344 PF01872 RibD C-terminal domain AM1_4347 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AM1_4347 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AM1_4347 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AM1_4348 PF02233 NAD(P) transhydrogenase beta subunit AM1_4349 PF04228 Putative neutral zinc metallopeptidase AM1_4350 PF00731 AIR carboxylase AM1_4351 PF00583 Acetyltransferase (GNAT) family AM1_4352 PF14489 QueF-like protein AM1_4353 PF13180 PDZ domain AM1_4355 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AM1_4355 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase AM1_4356 PF00849 RNA pseudouridylate synthase AM1_4356 PF01479 S4 domain AM1_4357 PF00551 Formyl transferase AM1_4359 PF17275 Family of unknown function (DUF5340) AM1_4360 PF00218 Indole-3-glycerol phosphate synthase AM1_4361 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM1_4361 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_4362 PF00571 CBS domain AM1_4362 PF02163 Peptidase family M50 AM1_4363 PF01740 STAS domain AM1_4364 PF01434 Peptidase family M41 AM1_4364 PF00004 ATPase family associated with various cellular activities (AAA) AM1_4364 PF06480 FtsH Extracellular AM1_4364 PF17862 AAA+ lid domain AM1_4366 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM1_4367 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM1_4368 PF04002 RadC-like JAB domain AM1_4369 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM1_4369 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM1_4372 PF08865 Domain of unknown function (DUF1830) AM1_4373 PF12794 Mechanosensitive ion channel inner membrane domain 1 AM1_4373 PF12795 Mechanosensitive ion channel porin domain AM1_4373 PF00924 Mechanosensitive ion channel AM1_4374 PF01070 FMN-dependent dehydrogenase AM1_4376 PF13361 UvrD-like helicase C-terminal domain AM1_4376 PF00580 UvrD/REP helicase N-terminal domain AM1_4377 PF11738 Protein of unknown function (DUF3298) AM1_4377 PF01522 Polysaccharide deacetylase AM1_4377 PF13739 Deacetylase PdaC AM1_4381 PF13520 Amino acid permease AM1_4387 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_4387 PF03466 LysR substrate binding domain AM1_4389 PF00121 Triosephosphate isomerase AM1_4391 PF00664 ABC transporter transmembrane region AM1_4391 PF00005 ABC transporter AM1_4392 PF01464 Transglycosylase SLT domain AM1_4392 PF10145 Phage-related minor tail protein AM1_4392 PF01551 Peptidase family M23 AM1_4403 PF05140 ResB-like family AM1_4403 PF01578 Cytochrome C assembly protein AM1_4406 PF00970 Oxidoreductase FAD-binding domain AM1_4406 PF00042 Globin AM1_4406 PF00175 Oxidoreductase NAD-binding domain AM1_4411 PF00118 TCP-1/cpn60 chaperonin family AM1_4412 PF00166 Chaperonin 10 Kd subunit AM1_4415 PF14698 Argininosuccinate lyase C-terminal AM1_4415 PF00206 Lyase AM1_4417 PF00528 Binding-protein-dependent transport system inner membrane component AM1_4421 PF02938 GAD domain AM1_4421 PF00152 tRNA synthetases class II (D, K and N) AM1_4421 PF01336 OB-fold nucleic acid binding domain AM1_4424 PF00814 Glycoprotease family AM1_4425 PF02416 mttA/Hcf106 family AM1_4426 PF13326 Photosystem II Pbs27 AM1_4427 PF01888 CbiD AM1_4428 PF00117 Glutamine amidotransferase class-I AM1_4428 PF00958 GMP synthase C terminal domain AM1_4430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4430 PF00512 His Kinase A (phospho-acceptor) domain AM1_4430 PF00989 PAS fold AM1_4431 PF02514 CobN/Magnesium Chelatase AM1_4442 PF01554 MatE AM1_4444 PF01411 tRNA synthetases class II (A) AM1_4444 PF02272 DHHA1 domain AM1_4444 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM1_4446 PF01641 SelR domain AM1_4447 PF00664 ABC transporter transmembrane region AM1_4447 PF00005 ABC transporter AM1_4449 PF16639 Apocytochrome F, N-terminal AM1_4449 PF01333 Apocytochrome F, C-terminal AM1_4450 PF00355 Rieske [2Fe-2S] domain AM1_4452 PF00902 Sec-independent protein translocase protein (TatC) AM1_4456 PF13180 PDZ domain AM1_4459 PF00595 PDZ domain AM1_4459 PF03572 Peptidase family S41 AM1_4460 PF04172 LrgB-like family AM1_4461 PF03788 LrgA family AM1_4462 PF00585 C-terminal regulatory domain of Threonine dehydratase AM1_4462 PF00291 Pyridoxal-phosphate dependent enzyme AM1_4471 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AM1_4471 PF03625 Domain of unknown function DUF302 AM1_4475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM1_4479 PF03040 CemA family AM1_4480 PF00400 WD domain, G-beta repeat AM1_4492 PF04820 Tryptophan halogenase AM1_4494 PF00958 GMP synthase C terminal domain AM1_4494 PF13302 Acetyltransferase (GNAT) domain AM1_4494 PF00117 Glutamine amidotransferase class-I AM1_4494 PF13673 Acetyltransferase (GNAT) domain AM1_4494 PF03352 Methyladenine glycosylase AM1_4499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4499 PF00986 DNA gyrase B subunit, carboxyl terminus AM1_4499 PF00204 DNA gyrase B AM1_4499 PF01751 Toprim domain AM1_4503 PF03781 Sulfatase-modifying factor enzyme 1 AM1_4505 PF00330 Aconitase family (aconitate hydratase) AM1_4506 PF01253 Translation initiation factor SUI1 AM1_4512 PF01842 ACT domain AM1_4512 PF00551 Formyl transferase AM1_4514 PF07238 PilZ domain AM1_4514 PF03170 Bacterial cellulose synthase subunit AM1_4514 PF00535 Glycosyl transferase family 2 AM1_4515 PF00293 NUDIX domain AM1_4517 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM1_4536 PF00072 Response regulator receiver domain AM1_4537 PF00498 FHA domain AM1_4537 PF00563 EAL domain AM1_4537 PF00990 Diguanylate cyclase, GGDEF domain AM1_4538 PF00750 tRNA synthetases class I (R) AM1_4538 PF03485 Arginyl tRNA synthetase N terminal domain AM1_4538 PF05746 DALR anticodon binding domain AM1_4540 PF08241 Methyltransferase domain AM1_4541 PF01040 UbiA prenyltransferase family AM1_4542 PF00069 Protein kinase domain AM1_4542 PF00805 Pentapeptide repeats (8 copies) AM1_4546 PF03816 Cell envelope-related transcriptional attenuator domain AM1_4547 PF00483 Nucleotidyl transferase AM1_4548 PF08240 Alcohol dehydrogenase GroES-like domain AM1_4548 PF00107 Zinc-binding dehydrogenase AM1_4549 PF00293 NUDIX domain AM1_4550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM1_4554 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM1_4555 PF00575 S1 RNA binding domain AM1_4556 PF03477 ATP cone domain AM1_4563 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM1_4563 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM1_4563 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM1_4563 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM1_4564 PF01747 ATP-sulfurylase AM1_4564 PF14306 PUA-like domain AM1_4566 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM1_4568 PF02580 D-Tyr-tRNA(Tyr) deacylase AM1_4569 PF01380 SIS domain AM1_4571 PF00563 EAL domain AM1_4571 PF01590 GAF domain AM1_4571 PF00360 Phytochrome region AM1_4571 PF00990 Diguanylate cyclase, GGDEF domain AM1_4572 PF00657 GDSL-like Lipase/Acylhydrolase AM1_4579 PF07085 DRTGG domain AM1_4581 PF01790 Prolipoprotein diacylglyceryl transferase AM1_4582 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM1_4583 PF00762 Ferrochelatase AM1_4586 PF04539 Sigma-70 region 3 AM1_4586 PF04542 Sigma-70 region 2 AM1_4586 PF04545 Sigma-70, region 4 AM1_4586 PF00140 Sigma-70 factor, region 1.2 AM1_4590 PF01434 Peptidase family M41 AM1_4590 PF06480 FtsH Extracellular AM1_4590 PF00004 ATPase family associated with various cellular activities (AAA) AM1_4590 PF17862 AAA+ lid domain AM1_4592 PF12849 PBP superfamily domain AM1_4593 PF02130 Uncharacterized protein family UPF0054 AM1_4593 PF07883 Cupin domain AM1_4597 PF01243 Pyridoxamine 5'-phosphate oxidase AM1_4597 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM1_4600 PF00248 Aldo/keto reductase family AM1_4606 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM1_4608 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AM1_4612 PF00400 WD domain, G-beta repeat AM1_4615 PF01636 Phosphotransferase enzyme family AM1_4616 PF00069 Protein kinase domain AM1_4617 PF03466 LysR substrate binding domain AM1_4617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_4618 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM1_4618 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM1_4619 PF00510 Cytochrome c oxidase subunit III AM1_4620 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM1_4621 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM1_4621 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AM1_4623 PF01040 UbiA prenyltransferase family AM1_4624 PF00005 ABC transporter AM1_4633 PF01791 DeoC/LacD family aldolase AM1_4634 PF02565 Recombination protein O C terminal AM1_4634 PF11967 Recombination protein O N terminal AM1_4636 PF13439 Glycosyltransferase Family 4 AM1_4636 PF00534 Glycosyl transferases group 1 AM1_4637 PF02547 Queuosine biosynthesis protein AM1_4640 PF03065 Glycosyl hydrolase family 57 AM1_4640 PF09210 Domain of unknown function (DUF1957) AM1_4642 PF01933 Uncharacterised protein family UPF0052 AM1_4644 PF03776 Septum formation topological specificity factor MinE AM1_4645 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM1_4646 PF03775 Septum formation inhibitor MinC, C-terminal domain AM1_4648 PF04101 Glycosyltransferase family 28 C-terminal domain AM1_4648 PF03033 Glycosyltransferase family 28 N-terminal domain AM1_4651 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM1_4654 PF02602 Uroporphyrinogen-III synthase HemD AM1_4655 PF04542 Sigma-70 region 2 AM1_4655 PF08281 Sigma-70, region 4 AM1_4657 PF01202 Shikimate kinase AM1_4659 PF00487 Fatty acid desaturase AM1_4660 PF00919 Uncharacterized protein family UPF0004 AM1_4660 PF04055 Radical SAM superfamily AM1_4660 PF01938 TRAM domain AM1_4662 PF02481 DNA recombination-mediator protein A AM1_4662 PF17782 DprA winged helix domain AM1_4663 PF01327 Polypeptide deformylase AM1_4665 PF00032 Cytochrome b(C-terminal)/b6/petD AM1_4666 PF00033 Cytochrome b/b6/petB AM1_4667 PF03572 Peptidase family S41 AM1_4667 PF00595 PDZ domain AM1_4668 PF01966 HD domain AM1_4670 PF00075 RNase H AM1_4672 PF01725 Ham1 family AM1_4673 PF01940 Integral membrane protein DUF92 AM1_4676 PF01472 PUA domain AM1_4676 PF00696 Amino acid kinase family AM1_4682 PF01209 ubiE/COQ5 methyltransferase family AM1_4688 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM1_4688 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM1_4691 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AM1_4691 PF12557 Cob(I)alamin adenosyltransferase N terminal AM1_4693 PF01547 Bacterial extracellular solute-binding protein AM1_4696 PF00297 Ribosomal protein L3 AM1_4697 PF00573 Ribosomal protein L4/L1 family AM1_4698 PF00276 Ribosomal protein L23 AM1_4699 PF03947 Ribosomal Proteins L2, C-terminal domain AM1_4699 PF00181 Ribosomal Proteins L2, RNA binding domain AM1_4700 PF00203 Ribosomal protein S19 AM1_4701 PF00237 Ribosomal protein L22p/L17e AM1_4702 PF07650 KH domain AM1_4702 PF00189 Ribosomal protein S3, C-terminal domain AM1_4703 PF00252 Ribosomal protein L16p/L10e AM1_4704 PF00831 Ribosomal L29 protein AM1_4705 PF00366 Ribosomal protein S17 AM1_4706 PF00238 Ribosomal protein L14p/L23e AM1_4707 PF00467 KOW motif AM1_4707 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AM1_4708 PF00281 Ribosomal protein L5 AM1_4708 PF00673 ribosomal L5P family C-terminus AM1_4709 PF00410 Ribosomal protein S8 AM1_4710 PF00347 Ribosomal protein L6 AM1_4711 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AM1_4712 PF03719 Ribosomal protein S5, C-terminal domain AM1_4712 PF00333 Ribosomal protein S5, N-terminal domain AM1_4713 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AM1_4714 PF00344 SecY translocase AM1_4716 PF01176 Translation initiation factor 1A / IF-1 AM1_4717 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AM1_4717 PF00877 NlpC/P60 family AM1_4718 PF03793 PASTA domain AM1_4718 PF00069 Protein kinase domain AM1_4730 PF13426 PAS domain AM1_4730 PF00196 Bacterial regulatory proteins, luxR family AM1_4731 PF00581 Rhodanese-like domain AM1_4732 PF05729 NACHT domain AM1_4732 PF00805 Pentapeptide repeats (8 copies) AM1_4732 PF00400 WD domain, G-beta repeat AM1_4734 PF04480 Protein of unknown function (DUF559) AM1_4737 PF00400 WD domain, G-beta repeat AM1_4738 PF08681 Protein of unknown function (DUF1778) AM1_4740 PF00356 Bacterial regulatory proteins, lacI family AM1_4753 PF17864 RuvB AAA lid domain AM1_4753 PF05491 RuvB C-terminal winged helix domain AM1_4753 PF05496 Holliday junction DNA helicase RuvB P-loop domain AM1_4754 PF01139 tRNA-splicing ligase RtcB AM1_4755 PF02397 Bacterial sugar transferase AM1_4757 PF04539 Sigma-70 region 3 AM1_4757 PF04545 Sigma-70, region 4 AM1_4757 PF04542 Sigma-70 region 2 AM1_4758 PF01027 Inhibitor of apoptosis-promoting Bax1 AM1_4760 PF16916 Dimerisation domain of Zinc Transporter AM1_4760 PF01545 Cation efflux family AM1_4761 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AM1_4761 PF02222 ATP-grasp domain AM1_4763 PF00004 ATPase family associated with various cellular activities (AAA) AM1_4763 PF01434 Peptidase family M41 AM1_4763 PF06480 FtsH Extracellular AM1_4763 PF17862 AAA+ lid domain AM1_4767 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AM1_4767 PF01266 FAD dependent oxidoreductase AM1_4768 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM1_4768 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM1_4769 PF00266 Aminotransferase class-V AM1_4772 PF00563 EAL domain AM1_4772 PF00990 Diguanylate cyclase, GGDEF domain AM1_4772 PF13426 PAS domain AM1_4786 PF02384 N-6 DNA Methylase AM1_4786 PF12161 HsdM N-terminal domain AM1_4792 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM1_4793 PF00072 Response regulator receiver domain AM1_4793 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_4793 PF01627 Hpt domain AM1_4793 PF00512 His Kinase A (phospho-acceptor) domain AM1_4793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4793 PF00672 HAMP domain AM1_4795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4795 PF00512 His Kinase A (phospho-acceptor) domain AM1_4803 PF00490 Delta-aminolevulinic acid dehydratase AM1_4805 PF00291 Pyridoxal-phosphate dependent enzyme AM1_4810 PF00773 RNB domain AM1_4811 PF11780 Protein of unknown function (DUF3318) AM1_4812 PF01084 Ribosomal protein S18 AM1_4813 PF00471 Ribosomal protein L33 AM1_4818 PF08240 Alcohol dehydrogenase GroES-like domain AM1_4818 PF00107 Zinc-binding dehydrogenase AM1_4821 PF03091 CutA1 divalent ion tolerance protein AM1_4822 PF00512 His Kinase A (phospho-acceptor) domain AM1_4822 PF01627 Hpt domain AM1_4822 PF00672 HAMP domain AM1_4822 PF17149 Periplasmic sensor domain found in signal transduction proteins AM1_4822 PF00072 Response regulator receiver domain AM1_4822 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4823 PF00005 ABC transporter AM1_4823 PF00664 ABC transporter transmembrane region AM1_4826 PF01593 Flavin containing amine oxidoreductase AM1_4828 PF08241 Methyltransferase domain AM1_4829 PF13477 Glycosyl transferase 4-like AM1_4829 PF00534 Glycosyl transferases group 1 AM1_4833 PF00534 Glycosyl transferases group 1 AM1_4836 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM1_4838 PF01022 Bacterial regulatory protein, arsR family AM1_4839 PF00085 Thioredoxin AM1_4840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM1_4844 PF13407 Periplasmic binding protein domain AM1_4845 PF13249 Squalene-hopene cyclase N-terminal domain AM1_4845 PF13243 Squalene-hopene cyclase C-terminal domain AM1_4848 PF01872 RibD C-terminal domain AM1_4849 PF03572 Peptidase family S41 AM1_4849 PF00595 PDZ domain AM1_4850 PF13439 Glycosyltransferase Family 4 AM1_4850 PF00534 Glycosyl transferases group 1 AM1_4852 PF11965 Domain of unknown function (DUF3479) AM1_4852 PF02514 CobN/Magnesium Chelatase AM1_4853 PF02681 Divergent PAP2 family AM1_4854 PF00348 Polyprenyl synthetase AM1_4855 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM1_4855 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM1_4857 PF05193 Peptidase M16 inactive domain AM1_4857 PF00675 Insulinase (Peptidase family M16) AM1_4859 PF05193 Peptidase M16 inactive domain AM1_4859 PF00675 Insulinase (Peptidase family M16) AM1_4860 PF00288 GHMP kinases N terminal domain AM1_4860 PF08544 GHMP kinases C terminal AM1_4861 PF02706 Chain length determinant protein AM1_4861 PF13807 G-rich domain on putative tyrosine kinase AM1_4861 PF13614 AAA domain AM1_4863 PF03552 Cellulose synthase AM1_4863 PF00535 Glycosyl transferase family 2 AM1_4863 PF03170 Bacterial cellulose synthase subunit AM1_4863 PF07238 PilZ domain AM1_4868 PF14602 Hexapeptide repeat of succinyl-transferase AM1_4868 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_4868 PF12804 MobA-like NTP transferase domain AM1_4872 PF01396 Topoisomerase DNA binding C4 zinc finger AM1_4872 PF01751 Toprim domain AM1_4872 PF01131 DNA topoisomerase AM1_4882 PF13546 DDE superfamily endonuclease AM1_4884 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AM1_4884 PF00326 Prolyl oligopeptidase family AM1_4885 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AM1_4885 PF00326 Prolyl oligopeptidase family AM1_4886 PF13545 Crp-like helix-turn-helix domain AM1_4886 PF00027 Cyclic nucleotide-binding domain AM1_4889 PF02581 Thiamine monophosphate synthase AM1_4890 PF04015 Domain of unknown function (DUF362) AM1_4891 PF11264 Thylakoid formation protein AM1_4893 PF00462 Glutaredoxin AM1_4894 PF01722 BolA-like protein AM1_4896 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AM1_4896 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AM1_4897 PF01467 Cytidylyltransferase-like AM1_4899 PF02540 NAD synthase AM1_4899 PF00795 Carbon-nitrogen hydrolase AM1_4901 PF07885 Ion channel AM1_4901 PF02254 TrkA-N domain AM1_4902 PF02472 Biopolymer transport protein ExbD/TolR AM1_4903 PF01618 MotA/TolQ/ExbB proton channel family AM1_4905 PF03061 Thioesterase superfamily AM1_4907 PF01078 Magnesium chelatase, subunit ChlI AM1_4907 PF17863 AAA lid domain AM1_4908 PF10502 Signal peptidase, peptidase S26 AM1_4909 PF00348 Polyprenyl synthetase AM1_4910 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_4913 PF00485 Phosphoribulokinase / Uridine kinase family AM1_4914 PF00149 Calcineurin-like phosphoesterase AM1_4915 PF02152 Dihydroneopterin aldolase AM1_4917 PF01434 Peptidase family M41 AM1_4917 PF00004 ATPase family associated with various cellular activities (AAA) AM1_4917 PF06480 FtsH Extracellular AM1_4917 PF17862 AAA+ lid domain AM1_4921 PF00582 Universal stress protein family AM1_4929 PF01479 S4 domain AM1_4929 PF01728 FtsJ-like methyltransferase AM1_4933 PF09335 SNARE associated Golgi protein AM1_4940 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM1_4940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM1_4945 PF03707 Bacterial signalling protein N terminal repeat AM1_4945 PF00990 Diguanylate cyclase, GGDEF domain AM1_4945 PF00563 EAL domain AM1_4948 PF00072 Response regulator receiver domain AM1_4948 PF00196 Bacterial regulatory proteins, luxR family AM1_4950 PF02401 LytB protein AM1_4951 PF00950 ABC 3 transport family AM1_4952 PF00005 ABC transporter AM1_4953 PF01297 Zinc-uptake complex component A periplasmic AM1_4956 PF03170 Bacterial cellulose synthase subunit AM1_4956 PF00535 Glycosyl transferase family 2 AM1_4956 PF07238 PilZ domain AM1_4956 PF03552 Cellulose synthase AM1_4972 PF03572 Peptidase family S41 AM1_4972 PF00595 PDZ domain AM1_4974 PF01430 Hsp33 protein AM1_4978 PF00355 Rieske [2Fe-2S] domain AM1_4979 PF01590 GAF domain AM1_4979 PF00990 Diguanylate cyclase, GGDEF domain AM1_4979 PF00360 Phytochrome region AM1_4979 PF00563 EAL domain AM1_4980 PF08769 Sporulation initiation factor Spo0A C terminal AM1_4980 PF00072 Response regulator receiver domain AM1_4981 PF08448 PAS fold AM1_4981 PF00990 Diguanylate cyclase, GGDEF domain AM1_4981 PF00563 EAL domain AM1_4982 PF04389 Peptidase family M28 AM1_4984 PF04542 Sigma-70 region 2 AM1_4984 PF04539 Sigma-70 region 3 AM1_4984 PF04545 Sigma-70, region 4 AM1_4989 PF00400 WD domain, G-beta repeat AM1_4991 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM1_4991 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM1_4994 PF08240 Alcohol dehydrogenase GroES-like domain AM1_4994 PF00107 Zinc-binding dehydrogenase AM1_4996 PF00989 PAS fold AM1_4996 PF08447 PAS fold AM1_4996 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_4996 PF00512 His Kinase A (phospho-acceptor) domain AM1_5005 PF05532 CsbD-like AM1_5006 PF01609 Transposase DDE domain AM1_5006 PF13808 DDE_Tnp_1-associated AM1_5013 PF08241 Methyltransferase domain AM1_5014 PF01048 Phosphorylase superfamily AM1_5026 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM1_5026 PF00056 lactate/malate dehydrogenase, NAD binding domain AM1_5034 PF13538 UvrD-like helicase C-terminal domain AM1_5034 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AM1_5034 PF14490 Helix-hairpin-helix containing domain AM1_5035 PF01979 Amidohydrolase family AM1_5038 PF00005 ABC transporter AM1_5038 PF02687 FtsX-like permease family AM1_5038 PF12704 MacB-like periplasmic core domain AM1_5039 PF00005 ABC transporter AM1_5042 PF07043 Protein of unknown function (DUF1328) AM1_5046 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) AM1_5047 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM1_5048 PF00571 CBS domain AM1_5048 PF02163 Peptidase family M50 AM1_5049 PF00582 Universal stress protein family AM1_5050 PF01405 Photosystem II reaction centre T protein AM1_5051 PF00672 HAMP domain AM1_5051 PF00512 His Kinase A (phospho-acceptor) domain AM1_5051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5051 PF18698 Histidine kinase sensor domain AM1_5051 PF00989 PAS fold AM1_5052 PF00072 Response regulator receiver domain AM1_5052 PF00196 Bacterial regulatory proteins, luxR family AM1_5053 PF01062 Bestrophin, RFP-TM, chloride channel AM1_5056 PF00486 Transcriptional regulatory protein, C terminal AM1_5056 PF00072 Response regulator receiver domain AM1_5057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5057 PF00512 His Kinase A (phospho-acceptor) domain AM1_5057 PF00072 Response regulator receiver domain AM1_5057 PF00672 HAMP domain AM1_5057 PF01627 Hpt domain AM1_5057 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_5058 PF08448 PAS fold AM1_5058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5058 PF00512 His Kinase A (phospho-acceptor) domain AM1_5058 PF00672 HAMP domain AM1_5058 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB AM1_5060 PF00924 Mechanosensitive ion channel AM1_5067 PF00072 Response regulator receiver domain AM1_5067 PF00196 Bacterial regulatory proteins, luxR family AM1_5068 PF07689 KaiB domain AM1_5068 PF00512 His Kinase A (phospho-acceptor) domain AM1_5068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5074 PF01370 NAD dependent epimerase/dehydratase family AM1_5074 PF08338 Domain of unknown function (DUF1731) AM1_5076 PF01339 CheB methylesterase AM1_5076 PF00072 Response regulator receiver domain AM1_5077 PF00072 Response regulator receiver domain AM1_5077 PF01627 Hpt domain AM1_5077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5077 PF01584 CheW-like domain AM1_5078 PF00672 HAMP domain AM1_5078 PF02743 Cache domain AM1_5078 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM1_5079 PF01584 CheW-like domain AM1_5080 PF14332 Domain of unknown function (DUF4388) AM1_5080 PF00072 Response regulator receiver domain AM1_5081 PF00072 Response regulator receiver domain AM1_5083 PF01209 ubiE/COQ5 methyltransferase family AM1_5085 PF09335 SNARE associated Golgi protein AM1_5086 PF09335 SNARE associated Golgi protein AM1_5088 PF00563 EAL domain AM1_5088 PF00990 Diguanylate cyclase, GGDEF domain AM1_5088 PF03707 Bacterial signalling protein N terminal repeat AM1_5090 PF00571 CBS domain AM1_5090 PF00291 Pyridoxal-phosphate dependent enzyme AM1_5093 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AM1_5096 PF00486 Transcriptional regulatory protein, C terminal AM1_5096 PF00072 Response regulator receiver domain AM1_5099 PF02652 L-lactate permease AM1_5100 PF02417 Chromate transporter AM1_5101 PF01263 Aldose 1-epimerase AM1_5103 PF01774 UreD urease accessory protein AM1_5104 PF00547 Urease, gamma subunit AM1_5106 PF00699 Urease beta subunit AM1_5107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5107 PF00512 His Kinase A (phospho-acceptor) domain AM1_5107 PF01627 Hpt domain AM1_5107 PF00989 PAS fold AM1_5107 PF00072 Response regulator receiver domain AM1_5107 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM1_5108 PF00072 Response regulator receiver domain AM1_5109 PF00449 Urease alpha-subunit, N-terminal domain AM1_5109 PF01979 Amidohydrolase family AM1_5111 PF13359 DDE superfamily endonuclease AM1_5111 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_5113 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_5113 PF13359 DDE superfamily endonuclease AM1_5118 PF13185 GAF domain AM1_5118 PF00990 Diguanylate cyclase, GGDEF domain AM1_5118 PF00563 EAL domain AM1_5120 PF00005 ABC transporter AM1_5120 PF00664 ABC transporter transmembrane region AM1_5122 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM1_5122 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM1_5123 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM1_5123 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM1_5123 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM1_5123 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM1_5128 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM1_5135 PF00072 Response regulator receiver domain AM1_5135 PF01627 Hpt domain AM1_5135 PF00512 His Kinase A (phospho-acceptor) domain AM1_5135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5136 PF01969 Protein of unknown function DUF111 AM1_5138 PF01300 Telomere recombination AM1_5141 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_5143 PF04715 Anthranilate synthase component I, N terminal region AM1_5143 PF00425 chorismate binding enzyme AM1_5144 PF02531 PsaD AM1_5145 PF13426 PAS domain AM1_5145 PF00512 His Kinase A (phospho-acceptor) domain AM1_5145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5145 PF00672 HAMP domain AM1_5147 PF01609 Transposase DDE domain AM1_5147 PF13808 DDE_Tnp_1-associated AM1_5148 PF13180 PDZ domain AM1_5150 PF16124 RecQ zinc-binding AM1_5150 PF00271 Helicase conserved C-terminal domain AM1_5150 PF00270 DEAD/DEAH box helicase AM1_5154 PF13188 PAS domain AM1_5154 PF03707 Bacterial signalling protein N terminal repeat AM1_5154 PF00990 Diguanylate cyclase, GGDEF domain AM1_5154 PF00563 EAL domain AM1_5155 PF00067 Cytochrome P450 AM1_5164 PF00206 Lyase AM1_5164 PF10397 Adenylosuccinate lyase C-terminus AM1_5165 PF02560 Cyanate lyase C-terminal domain AM1_5166 PF00005 ABC transporter AM1_5167 PF00528 Binding-protein-dependent transport system inner membrane component AM1_5169 PF00486 Transcriptional regulatory protein, C terminal AM1_5169 PF00072 Response regulator receiver domain AM1_5170 PF00512 His Kinase A (phospho-acceptor) domain AM1_5170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5172 PF00535 Glycosyl transferase family 2 AM1_5174 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_5177 PF13546 DDE superfamily endonuclease AM1_5180 PF00069 Protein kinase domain AM1_5185 PF01008 Initiation factor 2 subunit family AM1_5186 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AM1_5186 PF02780 Transketolase, C-terminal domain AM1_5186 PF02779 Transketolase, pyrimidine binding domain AM1_5190 PF00528 Binding-protein-dependent transport system inner membrane component AM1_5192 PF12773 Double zinc ribbon AM1_5192 PF00498 FHA domain AM1_5193 PF00117 Glutamine amidotransferase class-I AM1_5193 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM1_5195 PF00561 alpha/beta hydrolase fold AM1_5196 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM1_5196 PF00588 SpoU rRNA Methylase family AM1_5197 PF00636 Ribonuclease III domain AM1_5200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM1_5200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM1_5202 PF00210 Ferritin-like domain AM1_5205 PF00156 Phosphoribosyl transferase domain AM1_5208 PF00069 Protein kinase domain AM1_5208 PF00805 Pentapeptide repeats (8 copies) AM1_5211 PF03707 Bacterial signalling protein N terminal repeat AM1_5211 PF00563 EAL domain AM1_5211 PF00990 Diguanylate cyclase, GGDEF domain AM1_5218 PF03435 Saccharopine dehydrogenase NADP binding domain AM1_5221 PF05973 Phage derived protein Gp49-like (DUF891) AM1_5222 PF01381 Helix-turn-helix AM1_5223 PF00692 dUTPase AM1_5225 PF17191 RecG wedge domain AM1_5225 PF00271 Helicase conserved C-terminal domain AM1_5225 PF00270 DEAD/DEAH box helicase AM1_5227 PF00990 Diguanylate cyclase, GGDEF domain AM1_5227 PF00563 EAL domain AM1_5227 PF00498 FHA domain AM1_5228 PF12794 Mechanosensitive ion channel inner membrane domain 1 AM1_5228 PF12795 Mechanosensitive ion channel porin domain AM1_5228 PF00924 Mechanosensitive ion channel AM1_5232 PF12146 Serine aminopeptidase, S33 AM1_5239 PF00080 Copper/zinc superoxide dismutase (SODC) AM1_5243 PF00561 alpha/beta hydrolase fold AM1_5246 PF00474 Sodium:solute symporter family AM1_5248 PF00395 S-layer homology domain AM1_5248 PF04966 Carbohydrate-selective porin, OprB family AM1_5253 PF01435 Peptidase family M48 AM1_5255 PF00679 Elongation factor G C-terminus AM1_5255 PF00009 Elongation factor Tu GTP binding domain AM1_5255 PF03144 Elongation factor Tu domain 2 AM1_5255 PF06421 GTP-binding protein LepA C-terminus AM1_5256 PF02075 Crossover junction endodeoxyribonuclease RuvC AM1_5258 PF00378 Enoyl-CoA hydratase/isomerase AM1_5261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5261 PF00512 His Kinase A (phospho-acceptor) domain AM1_5261 PF00989 PAS fold AM1_5262 PF00486 Transcriptional regulatory protein, C terminal AM1_5262 PF00072 Response regulator receiver domain AM1_5264 PF03616 Sodium/glutamate symporter AM1_5265 PF13847 Methyltransferase domain AM1_5265 PF01938 TRAM domain AM1_5267 PF13359 DDE superfamily endonuclease AM1_5267 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_5268 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_5268 PF13359 DDE superfamily endonuclease AM1_5275 PF17863 AAA lid domain AM1_5275 PF07726 ATPase family associated with various cellular activities (AAA) AM1_5276 PF07726 ATPase family associated with various cellular activities (AAA) AM1_5276 PF17863 AAA lid domain AM1_5286 PF13546 DDE superfamily endonuclease AM1_5288 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_5288 PF13359 DDE superfamily endonuclease AM1_5289 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_5289 PF13359 DDE superfamily endonuclease AM1_5300 PF13439 Glycosyltransferase Family 4 AM1_5302 PF00400 WD domain, G-beta repeat AM1_5302 PF00931 NB-ARC domain AM1_5304 PF03793 PASTA domain AM1_5304 PF00069 Protein kinase domain AM1_5305 PF02690 Na+/Pi-cotransporter AM1_5308 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_5308 PF01627 Hpt domain AM1_5308 PF00512 His Kinase A (phospho-acceptor) domain AM1_5308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5308 PF00072 Response regulator receiver domain AM1_5308 PF00672 HAMP domain AM1_5310 PF08865 Domain of unknown function (DUF1830) AM1_5311 PF05996 Ferredoxin-dependent bilin reductase AM1_5313 PF01520 N-acetylmuramoyl-L-alanine amidase AM1_5313 PF08239 Bacterial SH3 domain AM1_5315 PF00924 Mechanosensitive ion channel AM1_5325 PF01794 Ferric reductase like transmembrane component AM1_5327 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AM1_5327 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM1_5330 PF01063 Amino-transferase class IV AM1_5334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_5334 PF03466 LysR substrate binding domain AM1_5345 PF13417 Glutathione S-transferase, N-terminal domain AM1_5345 PF00043 Glutathione S-transferase, C-terminal domain AM1_5346 PF13419 Haloacid dehalogenase-like hydrolase AM1_5348 PF07681 DoxX AM1_5349 PF14528 LAGLIDADG-like domain AM1_5349 PF03796 DnaB-like helicase C terminal domain AM1_5349 PF03796 DnaB-like helicase C terminal domain AM1_5349 PF00772 DnaB-like helicase N terminal domain AM1_5349 PF14528 LAGLIDADG-like domain AM1_5349 PF00772 DnaB-like helicase N terminal domain AM1_5350 PF03948 Ribosomal protein L9, C-terminal domain AM1_5350 PF01281 Ribosomal protein L9, N-terminal domain AM1_5356 PF01625 Peptide methionine sulfoxide reductase AM1_5359 PF00069 Protein kinase domain AM1_5361 PF00849 RNA pseudouridylate synthase AM1_5362 PF02361 Cobalt transport protein AM1_5363 PF04715 Anthranilate synthase component I, N terminal region AM1_5363 PF00425 chorismate binding enzyme AM1_5365 PF01168 Alanine racemase, N-terminal domain AM1_5366 PF04472 Cell division protein SepF AM1_5367 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM1_5367 PF03807 NADP oxidoreductase coenzyme F420-dependent AM1_5369 PF00005 ABC transporter AM1_5369 PF17912 MalK OB fold domain AM1_5371 PF00561 alpha/beta hydrolase fold AM1_5373 PF01761 3-dehydroquinate synthase AM1_5374 PF04225 Opacity-associated protein A LysM-like domain AM1_5374 PF01551 Peptidase family M23 AM1_5378 PF00361 Proton-conducting membrane transporter AM1_5379 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AM1_5379 PF00361 Proton-conducting membrane transporter AM1_5379 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM1_5380 PF00936 BMC domain AM1_5381 PF00936 BMC domain AM1_5382 PF03319 Ethanolamine utilisation protein EutN/carboxysome AM1_5383 PF00101 Ribulose bisphosphate carboxylase, small chain AM1_5386 PF00709 Adenylosuccinate synthetase AM1_5392 PF00781 Diacylglycerol kinase catalytic domain AM1_5392 PF02142 MGS-like domain AM1_5401 PF00293 NUDIX domain AM1_5405 PF05198 Translation initiation factor IF-3, N-terminal domain AM1_5405 PF00707 Translation initiation factor IF-3, C-terminal domain AM1_5406 PF08361 MAATS-type transcriptional repressor, C-terminal region AM1_5406 PF00440 Bacterial regulatory proteins, tetR family AM1_5408 PF08351 Domain of unknown function (DUF1726) AM1_5408 PF05127 Helicase AM1_5408 PF17176 tRNA-binding domain AM1_5408 PF13718 GNAT acetyltransferase 2 AM1_5411 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM1_5411 PF02142 MGS-like domain AM1_5411 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM1_5413 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM1_5413 PF02142 MGS-like domain AM1_5413 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM1_5414 PF02653 Branched-chain amino acid transport system / permease component AM1_5416 PF01797 Transposase IS200 like AM1_5419 PF02540 NAD synthase AM1_5420 PF00312 Ribosomal protein S15 AM1_5422 PF18152 DAHP synthase ferredoxin-like domain AM1_5422 PF00793 DAHP synthetase I family AM1_5424 PF01209 ubiE/COQ5 methyltransferase family AM1_5428 PF00850 Histone deacetylase domain AM1_5434 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AM1_5434 PF00400 WD domain, G-beta repeat AM1_5436 PF00578 AhpC/TSA family AM1_5437 PF01966 HD domain AM1_5437 PF07698 7TM receptor with intracellular HD hydrolase AM1_5437 PF07697 7TM-HD extracellular AM1_5440 PF00571 CBS domain AM1_5440 PF00478 IMP dehydrogenase / GMP reductase domain AM1_5442 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_5443 PF00085 Thioredoxin AM1_5447 PF17862 AAA+ lid domain AM1_5447 PF06480 FtsH Extracellular AM1_5447 PF00004 ATPase family associated with various cellular activities (AAA) AM1_5447 PF01434 Peptidase family M41 AM1_5452 PF01610 Transposase AM1_5452 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_5452 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_5461 PF12627 Probable RNA and SrmB- binding site of polymerase A AM1_5461 PF01743 Poly A polymerase head domain AM1_5461 PF01966 HD domain AM1_5468 PF02311 AraC-like ligand binding domain AM1_5468 PF12833 Helix-turn-helix domain AM1_5469 PF00400 WD domain, G-beta repeat AM1_5469 PF00931 NB-ARC domain AM1_5472 PF00561 alpha/beta hydrolase fold AM1_5474 PF13649 Methyltransferase domain AM1_5478 PF02397 Bacterial sugar transferase AM1_5479 PF03781 Sulfatase-modifying factor enzyme 1 AM1_5480 PF00069 Protein kinase domain AM1_5480 PF00805 Pentapeptide repeats (8 copies) AM1_5482 PF03979 Sigma-70 factor, region 1.1 AM1_5482 PF04542 Sigma-70 region 2 AM1_5482 PF04539 Sigma-70 region 3 AM1_5482 PF04545 Sigma-70, region 4 AM1_5482 PF00140 Sigma-70 factor, region 1.2 AM1_5483 PF00154 recA bacterial DNA recombination protein AM1_5485 PF02586 SOS response associated peptidase (SRAP) AM1_5486 PF00817 impB/mucB/samB family AM1_5486 PF11799 impB/mucB/samB family C-terminal domain AM1_5488 PF00043 Glutathione S-transferase, C-terminal domain AM1_5488 PF13417 Glutathione S-transferase, N-terminal domain AM1_5489 PF13546 DDE superfamily endonuclease AM1_5490 PF00543 Nitrogen regulatory protein P-II AM1_5494 PF00578 AhpC/TSA family AM1_5494 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM1_5497 PF00625 Guanylate kinase AM1_5498 PF04025 Domain of unknown function (DUF370) AM1_5501 PF01740 STAS domain AM1_5507 PF01765 Ribosome recycling factor AM1_5511 PF02468 Photosystem II reaction centre N protein (psbN) AM1_5512 PF00737 Photosystem II 10 kDa phosphoprotein AM1_5513 PF02416 mttA/Hcf106 family AM1_5514 PF01195 Peptidyl-tRNA hydrolase AM1_5515 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_5516 PF04055 Radical SAM superfamily AM1_5516 PF06463 Molybdenum Cofactor Synthesis C AM1_5517 PF12681 Glyoxalase-like domain AM1_5521 PF00456 Transketolase, thiamine diphosphate binding domain AM1_5521 PF02780 Transketolase, C-terminal domain AM1_5521 PF02779 Transketolase, pyrimidine binding domain AM1_5522 PF00109 Beta-ketoacyl synthase, N-terminal domain AM1_5522 PF02801 Beta-ketoacyl synthase, C-terminal domain AM1_5523 PF00550 Phosphopantetheine attachment site AM1_5525 PF00561 alpha/beta hydrolase fold AM1_5526 PF02754 Cysteine-rich domain AM1_5528 PF01627 Hpt domain AM1_5528 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_5528 PF00072 Response regulator receiver domain AM1_5528 PF00512 His Kinase A (phospho-acceptor) domain AM1_5528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5528 PF00672 HAMP domain AM1_5529 PF02151 UvrB/uvrC motif AM1_5529 PF12344 Ultra-violet resistance protein B AM1_5529 PF00271 Helicase conserved C-terminal domain AM1_5529 PF17757 UvrB interaction domain AM1_5529 PF04851 Type III restriction enzyme, res subunit AM1_5539 PF16736 Single Cache-like AM1_5539 PF00989 PAS fold AM1_5539 PF00512 His Kinase A (phospho-acceptor) domain AM1_5539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5540 PF01627 Hpt domain AM1_5540 PF00486 Transcriptional regulatory protein, C terminal AM1_5540 PF00072 Response regulator receiver domain AM1_5543 PF12706 Beta-lactamase superfamily domain AM1_5546 PF13439 Glycosyltransferase Family 4 AM1_5546 PF00534 Glycosyl transferases group 1 AM1_5547 PF00534 Glycosyl transferases group 1 AM1_5547 PF13439 Glycosyltransferase Family 4 AM1_5548 PF13439 Glycosyltransferase Family 4 AM1_5548 PF00534 Glycosyl transferases group 1 AM1_5549 PF00534 Glycosyl transferases group 1 AM1_5549 PF13439 Glycosyltransferase Family 4 AM1_5550 PF18693 TRAM domain AM1_5550 PF00919 Uncharacterized protein family UPF0004 AM1_5550 PF04055 Radical SAM superfamily AM1_5551 PF05173 Dihydrodipicolinate reductase, C-terminus AM1_5551 PF01113 Dihydrodipicolinate reductase, N-terminus AM1_5552 PF03912 Psb28 protein AM1_5553 PF03572 Peptidase family S41 AM1_5553 PF00595 PDZ domain AM1_5555 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AM1_5555 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM1_5556 PF01165 Ribosomal protein S21 AM1_5557 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_5562 PF00501 AMP-binding enzyme AM1_5564 PF11965 Domain of unknown function (DUF3479) AM1_5564 PF02514 CobN/Magnesium Chelatase AM1_5569 PF03707 Bacterial signalling protein N terminal repeat AM1_5569 PF00990 Diguanylate cyclase, GGDEF domain AM1_5569 PF00563 EAL domain AM1_5570 PF03099 Biotin/lipoate A/B protein ligase family AM1_5571 PF00571 CBS domain AM1_5571 PF02163 Peptidase family M50 AM1_5574 PF06463 Molybdenum Cofactor Synthesis C AM1_5574 PF04055 Radical SAM superfamily AM1_5575 PF00462 Glutaredoxin AM1_5576 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM1_5576 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM1_5577 PF16363 GDP-mannose 4,6 dehydratase AM1_5582 PF04434 SWIM zinc finger AM1_5586 PF00535 Glycosyl transferase family 2 AM1_5591 PF09382 RQC domain AM1_5591 PF16124 RecQ zinc-binding AM1_5591 PF00570 HRDC domain AM1_5591 PF00270 DEAD/DEAH box helicase AM1_5591 PF00271 Helicase conserved C-terminal domain AM1_5595 PF01797 Transposase IS200 like AM1_5596 PF00488 MutS domain V AM1_5596 PF05190 MutS family domain IV AM1_5596 PF05192 MutS domain III AM1_5596 PF05188 MutS domain II AM1_5596 PF01624 MutS domain I AM1_5599 PF17768 RecJ OB domain AM1_5599 PF02272 DHHA1 domain AM1_5599 PF01368 DHH family AM1_5599 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AM1_5603 PF00005 ABC transporter AM1_5604 PF04286 Protein of unknown function (DUF445) AM1_5606 PF00005 ABC transporter AM1_5607 PF03109 ABC1 family AM1_5610 PF02617 ATP-dependent Clp protease adaptor protein ClpS AM1_5613 PF01189 16S rRNA methyltransferase RsmB/F AM1_5613 PF01029 NusB family AM1_5618 PF11378 Protein of unknown function (DUF3181) AM1_5620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM1_5620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM1_5621 PF02163 Peptidase family M50 AM1_5621 PF17820 PDZ domain AM1_5623 PF08448 PAS fold AM1_5623 PF00563 EAL domain AM1_5623 PF00990 Diguanylate cyclase, GGDEF domain AM1_5624 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM1_5628 PF01594 AI-2E family transporter AM1_5631 PF17886 HSP20-like domain found in ArsA AM1_5631 PF02374 Anion-transporting ATPase AM1_5633 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AM1_5634 PF00106 short chain dehydrogenase AM1_5635 PF01227 GTP cyclohydrolase I AM1_5637 PF00072 Response regulator receiver domain AM1_5638 PF00072 Response regulator receiver domain AM1_5638 PF09308 LuxQ, periplasmic AM1_5638 PF00512 His Kinase A (phospho-acceptor) domain AM1_5638 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5644 PF01979 Amidohydrolase family AM1_5646 PF02794 RTX toxin acyltransferase family AM1_5651 PF00924 Mechanosensitive ion channel AM1_5659 PF03781 Sulfatase-modifying factor enzyme 1 AM1_5662 PF06745 KaiC AM1_5662 PF18073 Rubredoxin metal binding domain AM1_5663 PF00486 Transcriptional regulatory protein, C terminal AM1_5663 PF00072 Response regulator receiver domain AM1_5667 PF00158 Sigma-54 interaction domain AM1_5667 PF02954 Bacterial regulatory protein, Fis family AM1_5667 PF00072 Response regulator receiver domain AM1_5668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5668 PF00512 His Kinase A (phospho-acceptor) domain AM1_5668 PF00072 Response regulator receiver domain AM1_5668 PF09308 LuxQ, periplasmic AM1_5679 PF13546 DDE superfamily endonuclease AM1_5687 PF00400 WD domain, G-beta repeat AM1_5688 PF00072 Response regulator receiver domain AM1_5688 PF01627 Hpt domain AM1_5688 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_5688 PF00512 His Kinase A (phospho-acceptor) domain AM1_5688 PF00672 HAMP domain AM1_5688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5689 PF13230 Glutamine amidotransferases class-II AM1_5690 PF12867 DinB superfamily AM1_5690 PF03781 Sulfatase-modifying factor enzyme 1 AM1_5691 PF10017 Histidine-specific methyltransferase, SAM-dependent AM1_5692 PF00012 Hsp70 protein AM1_5693 PF00226 DnaJ domain AM1_5693 PF01556 DnaJ C terminal domain AM1_5696 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AM1_5699 PF00069 Protein kinase domain AM1_5700 PF00069 Protein kinase domain AM1_5701 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM1_5701 PF02772 S-adenosylmethionine synthetase, central domain AM1_5701 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM1_5702 PF00535 Glycosyl transferase family 2 AM1_5704 PF00072 Response regulator receiver domain AM1_5704 PF01627 Hpt domain AM1_5704 PF00512 His Kinase A (phospho-acceptor) domain AM1_5704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5704 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_5704 PF00672 HAMP domain AM1_5706 PF05958 tRNA (Uracil-5-)-methyltransferase AM1_5706 PF01938 TRAM domain AM1_5713 PF00535 Glycosyl transferase family 2 AM1_5714 PF00535 Glycosyl transferase family 2 AM1_5715 PF00534 Glycosyl transferases group 1 AM1_5715 PF13439 Glycosyltransferase Family 4 AM1_5720 PF00005 ABC transporter AM1_5720 PF00664 ABC transporter transmembrane region AM1_5721 PF00535 Glycosyl transferase family 2 AM1_5722 PF00132 Bacterial transferase hexapeptide (six repeats) AM1_5726 PF13614 AAA domain AM1_5727 PF00534 Glycosyl transferases group 1 AM1_5727 PF13439 Glycosyltransferase Family 4 AM1_5729 PF00534 Glycosyl transferases group 1 AM1_5729 PF13439 Glycosyltransferase Family 4 AM1_5733 PF00155 Aminotransferase class I and II AM1_5737 PF00521 DNA gyrase/topoisomerase IV, subunit A AM1_5737 PF03989 DNA gyrase C-terminal domain, beta-propeller AM1_5742 PF01521 Iron-sulphur cluster biosynthesis AM1_5743 PF00483 Nucleotidyl transferase AM1_5743 PF01050 Mannose-6-phosphate isomerase AM1_5748 PF08486 Stage II sporulation protein AM1_5749 PF16363 GDP-mannose 4,6 dehydratase AM1_5751 PF00005 ABC transporter AM1_5753 PF00180 Isocitrate/isopropylmalate dehydrogenase AM1_5754 PF03971 Monomeric isocitrate dehydrogenase AM1_5755 PF00069 Protein kinase domain AM1_5758 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AM1_5759 PF03808 Glycosyl transferase WecB/TagA/CpsF family AM1_5760 PF01488 Shikimate / quinate 5-dehydrogenase AM1_5760 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AM1_5760 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AM1_5761 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM1_5761 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM1_5761 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM1_5762 PF16363 GDP-mannose 4,6 dehydratase AM1_5763 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM1_5764 PF13537 Glutamine amidotransferase domain AM1_5764 PF00733 Asparagine synthase AM1_5766 PF13847 Methyltransferase domain AM1_5778 PF00936 BMC domain AM1_5779 PF02142 MGS-like domain AM1_5779 PF01808 AICARFT/IMPCHase bienzyme AM1_5780 PF00067 Cytochrome P450 AM1_5783 PF08239 Bacterial SH3 domain AM1_5783 PF00069 Protein kinase domain AM1_5784 PF01904 Protein of unknown function DUF72 AM1_5785 PF00005 ABC transporter AM1_5785 PF16326 ABC transporter C-terminal domain AM1_5785 PF12848 ABC transporter AM1_5787 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AM1_5787 PF00953 Glycosyl transferase family 4 AM1_5788 PF00753 Metallo-beta-lactamase superfamily AM1_5788 PF16123 Hydroxyacylglutathione hydrolase C-terminus AM1_5796 PF04794 YdjC-like protein AM1_5798 PF04055 Radical SAM superfamily AM1_5798 PF02310 B12 binding domain AM1_5801 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_5801 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_5807 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_5843 PF12146 Serine aminopeptidase, S33 AM1_5844 PF12833 Helix-turn-helix domain AM1_5844 PF02311 AraC-like ligand binding domain AM1_5848 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_5848 PF01610 Transposase AM1_5848 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_5858 PF00990 Diguanylate cyclase, GGDEF domain AM1_5858 PF00072 Response regulator receiver domain AM1_5859 PF00563 EAL domain AM1_5859 PF03707 Bacterial signalling protein N terminal repeat AM1_5859 PF00990 Diguanylate cyclase, GGDEF domain AM1_5863 PF13610 DDE domain AM1_5876 PF01476 LysM domain AM1_5876 PF01551 Peptidase family M23 AM1_5876 PF08525 Opacity-associated protein A N-terminal motif AM1_5878 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AM1_5880 PF00114 Pilin (bacterial filament) AM1_5880 PF07963 Prokaryotic N-terminal methylation motif AM1_5883 PF13359 DDE superfamily endonuclease AM1_5883 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_5892 PF08448 PAS fold AM1_5892 PF03705 CheR methyltransferase, all-alpha domain AM1_5892 PF01739 CheR methyltransferase, SAM binding domain AM1_5892 PF01339 CheB methylesterase AM1_5894 PF00360 Phytochrome region AM1_5894 PF08446 PAS fold AM1_5894 PF00512 His Kinase A (phospho-acceptor) domain AM1_5894 PF01590 GAF domain AM1_5894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5895 PF00486 Transcriptional regulatory protein, C terminal AM1_5895 PF00072 Response regulator receiver domain AM1_5896 PF00072 Response regulator receiver domain AM1_5897 PF00360 Phytochrome region AM1_5897 PF00512 His Kinase A (phospho-acceptor) domain AM1_5897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5897 PF01590 GAF domain AM1_5897 PF08446 PAS fold AM1_5899 PF01047 MarR family AM1_5900 PF00892 EamA-like transporter family AM1_5902 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AM1_5903 PF13409 Glutathione S-transferase, N-terminal domain AM1_5904 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM1_5904 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_5905 PF00155 Aminotransferase class I and II AM1_5906 PF00216 Bacterial DNA-binding protein AM1_5920 PF03725 3' exoribonuclease family, domain 2 AM1_5920 PF01138 3' exoribonuclease family, domain 1 AM1_5920 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM1_5920 PF00013 KH domain AM1_5920 PF00575 S1 RNA binding domain AM1_5922 PF00176 SNF2 family N-terminal domain AM1_5922 PF00271 Helicase conserved C-terminal domain AM1_5922 PF12419 SNF2 Helicase protein AM1_5924 PF00512 His Kinase A (phospho-acceptor) domain AM1_5924 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5924 PF00360 Phytochrome region AM1_5924 PF08446 PAS fold AM1_5924 PF01590 GAF domain AM1_5925 PF00072 Response regulator receiver domain AM1_5927 PF00183 Hsp90 protein AM1_5930 PF03358 NADPH-dependent FMN reductase AM1_5932 PF00805 Pentapeptide repeats (8 copies) AM1_5932 PF00069 Protein kinase domain AM1_5937 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM1_5937 PF01926 50S ribosome-binding GTPase AM1_5938 PF09367 CpeS-like protein AM1_5939 PF00756 Putative esterase AM1_5941 PF00459 Inositol monophosphatase family AM1_5943 PF00005 ABC transporter AM1_5943 PF06472 ABC transporter transmembrane region 2 AM1_5948 PF01381 Helix-turn-helix AM1_5953 PF01638 HxlR-like helix-turn-helix AM1_5955 PF02347 Glycine cleavage system P-protein AM1_5959 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AM1_5960 PF00990 Diguanylate cyclase, GGDEF domain AM1_5960 PF07694 5TMR of 5TMR-LYT AM1_5962 PF07963 Prokaryotic N-terminal methylation motif AM1_5962 PF00114 Pilin (bacterial filament) AM1_5964 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_5964 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_5966 PF00400 WD domain, G-beta repeat AM1_5966 PF00931 NB-ARC domain AM1_5974 PF00672 HAMP domain AM1_5974 PF00909 Ammonium Transporter Family AM1_5975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_5975 PF00512 His Kinase A (phospho-acceptor) domain AM1_5975 PF01627 Hpt domain AM1_5975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5975 PF00072 Response regulator receiver domain AM1_5975 PF00672 HAMP domain AM1_5976 PF00072 Response regulator receiver domain AM1_5978 PF03400 IS1 transposase AM1_5988 PF00005 ABC transporter AM1_5989 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM1_5989 PF00005 ABC transporter AM1_5990 PF02653 Branched-chain amino acid transport system / permease component AM1_5991 PF02653 Branched-chain amino acid transport system / permease component AM1_5993 PF00795 Carbon-nitrogen hydrolase AM1_5994 PF03069 Acetamidase/Formamidase family AM1_5997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_5997 PF00072 Response regulator receiver domain AM1_5997 PF00512 His Kinase A (phospho-acceptor) domain AM1_5997 PF09308 LuxQ, periplasmic AM1_6003 PF00421 Photosystem II protein AM1_6004 PF00258 Flavodoxin AM1_6006 PF00027 Cyclic nucleotide-binding domain AM1_6006 PF13545 Crp-like helix-turn-helix domain AM1_6007 PF00578 AhpC/TSA family AM1_6008 PF01494 FAD binding domain AM1_6011 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM1_6011 PF13202 EF hand AM1_6014 PF07995 Glucose / Sorbosone dehydrogenase AM1_6015 PF00400 WD domain, G-beta repeat AM1_6015 PF00931 NB-ARC domain AM1_6019 PF07963 Prokaryotic N-terminal methylation motif AM1_6019 PF08334 Type II secretion system (T2SS), protein G AM1_6030 PF01654 Cytochrome bd terminal oxidase subunit I AM1_6038 PF00005 ABC transporter AM1_6040 PF09115 DNA polymerase III, delta subunit, C terminal AM1_6041 PF02223 Thymidylate kinase AM1_6045 PF00124 Photosynthetic reaction centre protein AM1_6048 PF00862 Sucrose synthase AM1_6048 PF00534 Glycosyl transferases group 1 AM1_6050 PF17862 AAA+ lid domain AM1_6050 PF00004 ATPase family associated with various cellular activities (AAA) AM1_6050 PF01434 Peptidase family M41 AM1_6052 PF01975 Survival protein SurE AM1_6053 PF00990 Diguanylate cyclase, GGDEF domain AM1_6053 PF00072 Response regulator receiver domain AM1_6060 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM1_6067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6067 PF00512 His Kinase A (phospho-acceptor) domain AM1_6069 PF00072 Response regulator receiver domain AM1_6069 PF00990 Diguanylate cyclase, GGDEF domain AM1_6070 PF00512 His Kinase A (phospho-acceptor) domain AM1_6070 PF09308 LuxQ, periplasmic AM1_6070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6070 PF00072 Response regulator receiver domain AM1_6071 PF00931 NB-ARC domain AM1_6071 PF00400 WD domain, G-beta repeat AM1_6083 PF04820 Tryptophan halogenase AM1_6085 PF17874 MalT-like TPR region AM1_6085 PF00196 Bacterial regulatory proteins, luxR family AM1_6086 PF17874 MalT-like TPR region AM1_6086 PF00196 Bacterial regulatory proteins, luxR family AM1_6090 PF13649 Methyltransferase domain AM1_6096 PF00440 Bacterial regulatory proteins, tetR family AM1_6099 PF00440 Bacterial regulatory proteins, tetR family AM1_6099 PF16925 Tetracyclin repressor-like, C-terminal domain AM1_6100 PF08240 Alcohol dehydrogenase GroES-like domain AM1_6100 PF00107 Zinc-binding dehydrogenase AM1_6103 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AM1_6106 PF02311 AraC-like ligand binding domain AM1_6106 PF12833 Helix-turn-helix domain AM1_6113 PF13977 BetI-type transcriptional repressor, C-terminal AM1_6113 PF00440 Bacterial regulatory proteins, tetR family AM1_6125 PF02899 Phage integrase, N-terminal SAM-like domain AM1_6125 PF00589 Phage integrase family AM1_6126 PF13737 Transposase DDE domain AM1_6127 PF00589 Phage integrase family AM1_6127 PF02899 Phage integrase, N-terminal SAM-like domain AM1_6133 PF01554 MatE AM1_6134 PF00210 Ferritin-like domain AM1_6135 PF12833 Helix-turn-helix domain AM1_6136 PF03466 LysR substrate binding domain AM1_6136 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_6138 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM1_6139 PF00873 AcrB/AcrD/AcrF family AM1_6141 PF00106 short chain dehydrogenase AM1_6148 PF00999 Sodium/hydrogen exchanger family AM1_6151 PF01695 IstB-like ATP binding protein AM1_6152 PF00665 Integrase core domain AM1_6171 PF00140 Sigma-70 factor, region 1.2 AM1_6171 PF04545 Sigma-70, region 4 AM1_6171 PF03979 Sigma-70 factor, region 1.1 AM1_6171 PF04539 Sigma-70 region 3 AM1_6171 PF04542 Sigma-70 region 2 AM1_6173 PF00216 Bacterial DNA-binding protein AM1_6179 PF18818 Metallopeptidase superfamily domain AM1_6179 PF08401 Domain of unknown function (DUF1738) AM1_6180 PF13700 Domain of unknown function (DUF4158) AM1_6180 PF01526 Tn3 transposase DDE domain AM1_6182 PF00589 Phage integrase family AM1_6182 PF02899 Phage integrase, N-terminal SAM-like domain AM1_6197 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_6197 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_6197 PF01610 Transposase AM1_6199 PF00360 Phytochrome region AM1_6199 PF00990 Diguanylate cyclase, GGDEF domain AM1_6199 PF01590 GAF domain AM1_6199 PF00563 EAL domain AM1_6202 PF00589 Phage integrase family AM1_6205 PF00072 Response regulator receiver domain AM1_6205 PF00486 Transcriptional regulatory protein, C terminal AM1_6206 PF18698 Histidine kinase sensor domain AM1_6206 PF00512 His Kinase A (phospho-acceptor) domain AM1_6206 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6206 PF00672 HAMP domain AM1_6208 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_6209 PF00106 short chain dehydrogenase AM1_6213 PF01610 Transposase AM1_6213 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_6213 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_6214 PF05973 Phage derived protein Gp49-like (DUF891) AM1_6220 PF00931 NB-ARC domain AM1_6220 PF00400 WD domain, G-beta repeat AM1_6223 PF00400 WD domain, G-beta repeat AM1_6223 PF00931 NB-ARC domain AM1_6226 PF01348 Type II intron maturase AM1_6226 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM1_6227 PF01526 Tn3 transposase DDE domain AM1_6227 PF13700 Domain of unknown function (DUF4158) AM1_6232 PF12833 Helix-turn-helix domain AM1_6232 PF02311 AraC-like ligand binding domain AM1_6237 PF00665 Integrase core domain AM1_6238 PF01695 IstB-like ATP binding protein AM1_6240 PF00872 Transposase, Mutator family AM1_6258 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_6258 PF01610 Transposase AM1_6258 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_6261 PF13546 DDE superfamily endonuclease AM1_6263 PF02502 Ribose/Galactose Isomerase AM1_6266 PF08334 Type II secretion system (T2SS), protein G AM1_6266 PF07963 Prokaryotic N-terminal methylation motif AM1_6273 PF13737 Transposase DDE domain AM1_6281 PF00440 Bacterial regulatory proteins, tetR family AM1_6281 PF08359 YsiA-like protein, C-terminal region AM1_6282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6282 PF07730 Histidine kinase AM1_6284 PF01209 ubiE/COQ5 methyltransferase family AM1_6292 PF00069 Protein kinase domain AM1_6300 PF01022 Bacterial regulatory protein, arsR family AM1_6305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6305 PF00512 His Kinase A (phospho-acceptor) domain AM1_6305 PF01627 Hpt domain AM1_6305 PF00072 Response regulator receiver domain AM1_6306 PF00072 Response regulator receiver domain AM1_6307 PF02861 Clp amino terminal domain, pathogenicity island component AM1_6308 PF00196 Bacterial regulatory proteins, luxR family AM1_6308 PF00072 Response regulator receiver domain AM1_6311 PF01965 DJ-1/PfpI family AM1_6313 PF00196 Bacterial regulatory proteins, luxR family AM1_6313 PF00072 Response regulator receiver domain AM1_6314 PF13462 Thioredoxin AM1_6314 PF06965 Na+/H+ antiporter 1 AM1_6315 PF12833 Helix-turn-helix domain AM1_6316 PF12833 Helix-turn-helix domain AM1_6316 PF02311 AraC-like ligand binding domain AM1_6318 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM1_6319 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM1_6319 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AM1_6320 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AM1_6320 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AM1_6321 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AM1_6326 PF13737 Transposase DDE domain AM1_6328 PF13180 PDZ domain AM1_6330 PF13180 PDZ domain AM1_6332 PF00486 Transcriptional regulatory protein, C terminal AM1_6332 PF00072 Response regulator receiver domain AM1_6333 PF00072 Response regulator receiver domain AM1_6333 PF01627 Hpt domain AM1_6333 PF00512 His Kinase A (phospho-acceptor) domain AM1_6333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6333 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM1_6333 PF00672 HAMP domain AM1_6334 PF00582 Universal stress protein family AM1_6335 PF00689 Cation transporting ATPase, C-terminus AM1_6335 PF00690 Cation transporter/ATPase, N-terminus AM1_6336 PF00582 Universal stress protein family AM1_6345 PF00892 EamA-like transporter family AM1_6346 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM1_6346 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM1_6351 PF01208 Uroporphyrinogen decarboxylase (URO-D) AM1_6352 PF01475 Ferric uptake regulator family AM1_6355 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_6355 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM1_6357 PF00072 Response regulator receiver domain AM1_6358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6358 PF00512 His Kinase A (phospho-acceptor) domain AM1_6358 PF18415 Histidine kinase receptor ArcB trans-membrane domain AM1_6358 PF01627 Hpt domain AM1_6358 PF00072 Response regulator receiver domain AM1_6358 PF00989 PAS fold AM1_6359 PF00512 His Kinase A (phospho-acceptor) domain AM1_6359 PF09308 LuxQ, periplasmic AM1_6359 PF00072 Response regulator receiver domain AM1_6359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6361 PF13458 Periplasmic binding protein AM1_6362 PF01384 Phosphate transporter family AM1_6365 PF00069 Protein kinase domain AM1_6365 PF00805 Pentapeptide repeats (8 copies) AM1_6366 PF01493 GXGXG motif AM1_6366 PF01645 Conserved region in glutamate synthase AM1_6366 PF04898 Glutamate synthase central domain AM1_6366 PF00310 Glutamine amidotransferases class-II AM1_6370 PF02469 Fasciclin domain AM1_6372 PF00361 Proton-conducting membrane transporter AM1_6373 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AM1_6373 PF00361 Proton-conducting membrane transporter AM1_6373 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM1_6374 PF16736 Single Cache-like AM1_6374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_6374 PF00989 PAS fold AM1_6374 PF00512 His Kinase A (phospho-acceptor) domain AM1_6375 PF04966 Carbohydrate-selective porin, OprB family AM1_6376 PF00300 Histidine phosphatase superfamily (branch 1) AM1_6378 PF00248 Aldo/keto reductase family AM1_6381 PF00005 ABC transporter AM1_6381 PF00664 ABC transporter transmembrane region AM1_6383 PF04101 Glycosyltransferase family 28 C-terminal domain AM1_6386 PF00486 Transcriptional regulatory protein, C terminal AM1_6386 PF00072 Response regulator receiver domain AM1_6387 PF00072 Response regulator receiver domain AM1_6387 PF00486 Transcriptional regulatory protein, C terminal AM1_6388 PF00708 Acylphosphatase AM1_6391 PF03808 Glycosyl transferase WecB/TagA/CpsF family AM1_6407 PF10664 Cyanobacterial and plastid NDH-1 subunit M AM1_6410 PF00478 IMP dehydrogenase / GMP reductase domain AM1_6410 PF00571 CBS domain AM1_6422 PF00696 Amino acid kinase family AM1_6423 PF08041 PetM family of cytochrome b6f complex subunit 7 AM1_6424 PF03742 PetN AM1_6425 PF02419 PsbL protein AM1_A0001 PF13417 Glutathione S-transferase, N-terminal domain AM1_A0009 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM1_A0014 PF01695 IstB-like ATP binding protein AM1_A0015 PF00665 Integrase core domain AM1_A0017 PF00145 C-5 cytosine-specific DNA methylase AM1_A0018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_A0018 PF00512 His Kinase A (phospho-acceptor) domain AM1_A0022 PF01551 Peptidase family M23 AM1_A0041 PF01209 ubiE/COQ5 methyltransferase family AM1_A0047 PF00924 Mechanosensitive ion channel AM1_A0051 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_A0054 PF00440 Bacterial regulatory proteins, tetR family AM1_A0062 PF04472 Cell division protein SepF AM1_A0069 PF00156 Phosphoribosyl transferase domain AM1_A0069 PF05139 Erythromycin esterase AM1_A0071 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_A0079 PF17820 PDZ domain AM1_A0079 PF13180 PDZ domain AM1_A0084 PF02522 Aminoglycoside 3-N-acetyltransferase AM1_A0090 PF00912 Transglycosylase AM1_A0090 PF00905 Penicillin binding protein transpeptidase domain AM1_A0091 PF14490 Helix-hairpin-helix containing domain AM1_A0091 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AM1_A0091 PF13538 UvrD-like helicase C-terminal domain AM1_A0092 PF00154 recA bacterial DNA recombination protein AM1_A0095 PF00773 RNB domain AM1_A0095 PF08206 Ribonuclease B OB domain AM1_A0095 PF00575 S1 RNA binding domain AM1_A0096 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_A0114 PF00563 EAL domain AM1_A0114 PF00498 FHA domain AM1_A0114 PF00990 Diguanylate cyclase, GGDEF domain AM1_A0120 PF00106 short chain dehydrogenase AM1_A0124 PF00873 AcrB/AcrD/AcrF family AM1_A0125 PF00425 chorismate binding enzyme AM1_A0127 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM1_A0134 PF01850 PIN domain AM1_A0135 PF00589 Phage integrase family AM1_A0135 PF02899 Phage integrase, N-terminal SAM-like domain AM1_A0139 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM1_A0147 PF07664 Ferrous iron transport protein B C terminus AM1_A0147 PF17910 FeoB cytosolic helical domain AM1_A0147 PF02421 Ferrous iron transport protein B AM1_A0147 PF07670 Nucleoside recognition AM1_A0150 PF00210 Ferritin-like domain AM1_A0153 PF03649 Uncharacterised protein family (UPF0014) AM1_A0154 PF00005 ABC transporter AM1_A0155 PF07690 Major Facilitator Superfamily AM1_A0156 PF01497 Periplasmic binding protein AM1_A0157 PF07715 TonB-dependent Receptor Plug Domain AM1_A0157 PF00593 TonB dependent receptor AM1_A0161 PF00005 ABC transporter AM1_A0162 PF01032 FecCD transport family AM1_A0163 PF01032 FecCD transport family AM1_A0164 PF02472 Biopolymer transport protein ExbD/TolR AM1_A0165 PF01618 MotA/TolQ/ExbB proton channel family AM1_A0170 PF00593 TonB dependent receptor AM1_A0170 PF07715 TonB-dependent Receptor Plug Domain AM1_A0171 PF07690 Major Facilitator Superfamily AM1_A0172 PF00005 ABC transporter AM1_A0172 PF00664 ABC transporter transmembrane region AM1_A0172 PF04954 Siderophore-interacting protein AM1_A0172 PF08021 Siderophore-interacting FAD-binding domain AM1_A0173 PF00664 ABC transporter transmembrane region AM1_A0173 PF00005 ABC transporter AM1_A0182 PF01497 Periplasmic binding protein AM1_A0184 PF07715 TonB-dependent Receptor Plug Domain AM1_A0184 PF00593 TonB dependent receptor AM1_A0185 PF01497 Periplasmic binding protein AM1_A0193 PF00665 Integrase core domain AM1_A0193 PF13333 Integrase core domain AM1_A0193 PF13276 HTH-like domain AM1_A0198 PF00593 TonB dependent receptor AM1_A0198 PF07715 TonB-dependent Receptor Plug Domain AM1_A0202 PF01169 Uncharacterized protein family UPF0016 AM1_A0215 PF01695 IstB-like ATP binding protein AM1_A0220 PF00975 Thioesterase domain AM1_A0224 PF12833 Helix-turn-helix domain AM1_A0226 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM1_A0226 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM1_A0227 PF00550 Phosphopantetheine attachment site AM1_A0227 PF00668 Condensation domain AM1_A0227 PF00501 AMP-binding enzyme AM1_A0227 PF13193 AMP-binding enzyme C-terminal domain AM1_A0228 PF00550 Phosphopantetheine attachment site AM1_A0228 PF00698 Acyl transferase domain AM1_A0228 PF00109 Beta-ketoacyl synthase, N-terminal domain AM1_A0228 PF16197 Ketoacyl-synthetase C-terminal extension AM1_A0228 PF02801 Beta-ketoacyl synthase, C-terminal domain AM1_A0228 PF00668 Condensation domain AM1_A0230 PF08242 Methyltransferase domain AM1_A0230 PF00668 Condensation domain AM1_A0230 PF00550 Phosphopantetheine attachment site AM1_A0230 PF00501 AMP-binding enzyme AM1_A0231 PF00109 Beta-ketoacyl synthase, N-terminal domain AM1_A0231 PF00668 Condensation domain AM1_A0231 PF02801 Beta-ketoacyl synthase, C-terminal domain AM1_A0231 PF00698 Acyl transferase domain AM1_A0231 PF16197 Ketoacyl-synthetase C-terminal extension AM1_A0231 PF00550 Phosphopantetheine attachment site AM1_A0232 PF00501 AMP-binding enzyme AM1_A0232 PF13193 AMP-binding enzyme C-terminal domain AM1_A0232 PF00668 Condensation domain AM1_A0232 PF13193 AMP-binding enzyme C-terminal domain AM1_A0232 PF00501 AMP-binding enzyme AM1_A0232 PF00668 Condensation domain AM1_A0232 PF00550 Phosphopantetheine attachment site AM1_A0232 PF00550 Phosphopantetheine attachment site AM1_A0233 PF00668 Condensation domain AM1_A0233 PF00550 Phosphopantetheine attachment site AM1_A0233 PF00501 AMP-binding enzyme AM1_A0233 PF13193 AMP-binding enzyme C-terminal domain AM1_A0234 PF00202 Aminotransferase class-III AM1_A0235 PF13193 AMP-binding enzyme C-terminal domain AM1_A0235 PF00668 Condensation domain AM1_A0235 PF00550 Phosphopantetheine attachment site AM1_A0235 PF00975 Thioesterase domain AM1_A0235 PF00501 AMP-binding enzyme AM1_A0236 PF07993 Male sterility protein AM1_A0236 PF00501 AMP-binding enzyme AM1_A0236 PF13193 AMP-binding enzyme C-terminal domain AM1_A0236 PF00668 Condensation domain AM1_A0236 PF00550 Phosphopantetheine attachment site AM1_A0237 PF13649 Methyltransferase domain AM1_A0241 PF02801 Beta-ketoacyl synthase, C-terminal domain AM1_A0241 PF00109 Beta-ketoacyl synthase, N-terminal domain AM1_A0241 PF16197 Ketoacyl-synthetase C-terminal extension AM1_A0241 PF00668 Condensation domain AM1_A0241 PF13193 AMP-binding enzyme C-terminal domain AM1_A0241 PF00501 AMP-binding enzyme AM1_A0241 PF00202 Aminotransferase class-III AM1_A0241 PF00550 Phosphopantetheine attachment site AM1_A0245 PF01648 4'-phosphopantetheinyl transferase superfamily AM1_A0246 PF00501 AMP-binding enzyme AM1_A0246 PF13193 AMP-binding enzyme C-terminal domain AM1_A0247 PF00425 chorismate binding enzyme AM1_A0247 PF04715 Anthranilate synthase component I, N terminal region AM1_A0251 PF13614 AAA domain AM1_A0252 PF02195 ParB-like nuclease domain AM1_A0255 PF01526 Tn3 transposase DDE domain AM1_A0255 PF13700 Domain of unknown function (DUF4158) AM1_A0256 PF01348 Type II intron maturase AM1_A0256 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM1_A0258 PF00589 Phage integrase family AM1_A0258 PF02899 Phage integrase, N-terminal SAM-like domain AM1_A0259 PF01695 IstB-like ATP binding protein AM1_A0260 PF00665 Integrase core domain AM1_A0261 PF02899 Phage integrase, N-terminal SAM-like domain AM1_A0261 PF00589 Phage integrase family AM1_A0268 PF01475 Ferric uptake regulator family AM1_A0269 PF01169 Uncharacterized protein family UPF0016 AM1_A0273 PF07690 Major Facilitator Superfamily AM1_A0274 PF00593 TonB dependent receptor AM1_A0274 PF07715 TonB-dependent Receptor Plug Domain AM1_A0277 PF00484 Carbonic anhydrase AM1_A0282 PF03412 Peptidase C39 family AM1_A0282 PF00005 ABC transporter AM1_A0282 PF00664 ABC transporter transmembrane region AM1_A0289 PF02794 RTX toxin acyltransferase family AM1_A0296 PF00551 Formyl transferase AM1_A0296 PF00378 Enoyl-CoA hydratase/isomerase AM1_A0296 PF02911 Formyl transferase, C-terminal domain AM1_A0298 PF00931 NB-ARC domain AM1_A0298 PF00400 WD domain, G-beta repeat AM1_A0300 PF00578 AhpC/TSA family AM1_A0300 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM1_A0301 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM1_A0301 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM1_A0302 PF00753 Metallo-beta-lactamase superfamily AM1_A0303 PF00291 Pyridoxal-phosphate dependent enzyme AM1_A0312 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_A0312 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_A0312 PF01610 Transposase AM1_A0313 PF02195 ParB-like nuclease domain AM1_A0314 PF13614 AAA domain AM1_A0320 PF13545 Crp-like helix-turn-helix domain AM1_A0320 PF00027 Cyclic nucleotide-binding domain AM1_A0329 PF00145 C-5 cytosine-specific DNA methylase AM1_A0353 PF00216 Bacterial DNA-binding protein AM1_A0354 PF03979 Sigma-70 factor, region 1.1 AM1_A0354 PF00140 Sigma-70 factor, region 1.2 AM1_A0354 PF04542 Sigma-70 region 2 AM1_A0354 PF04539 Sigma-70 region 3 AM1_A0354 PF04545 Sigma-70, region 4 AM1_A0364 PF01740 STAS domain AM1_A0368 PF00990 Diguanylate cyclase, GGDEF domain AM1_A0368 PF00072 Response regulator receiver domain AM1_A0369 PF17149 Periplasmic sensor domain found in signal transduction proteins AM1_A0369 PF00072 Response regulator receiver domain AM1_A0369 PF01627 Hpt domain AM1_A0369 PF00512 His Kinase A (phospho-acceptor) domain AM1_A0369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_A0369 PF00672 HAMP domain AM1_A0375 PF00872 Transposase, Mutator family AM1_A0387 PF17841 BID domain of Bartonella effector protein (Bep) AM1_A0387 PF03389 MobA/MobL family AM1_A0387 PF01443 Viral (Superfamily 1) RNA helicase AM1_B0001 PF01610 Transposase AM1_B0001 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_B0001 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_B0002 PF01695 IstB-like ATP binding protein AM1_B0003 PF00665 Integrase core domain AM1_B0006 PF01695 IstB-like ATP binding protein AM1_B0012 PF00665 Integrase core domain AM1_B0013 PF01695 IstB-like ATP binding protein AM1_B0015 PF13180 PDZ domain AM1_B0023 PF00156 Phosphoribosyl transferase domain AM1_B0023 PF05139 Erythromycin esterase AM1_B0027 PF13614 AAA domain AM1_B0027 PF00376 MerR family regulatory protein AM1_B0028 PF02195 ParB-like nuclease domain AM1_B0035 PF00440 Bacterial regulatory proteins, tetR family AM1_B0035 PF16925 Tetracyclin repressor-like, C-terminal domain AM1_B0050 PF13732 Domain of unknown function (DUF4162) AM1_B0050 PF00005 ABC transporter AM1_B0054 PF13546 DDE superfamily endonuclease AM1_B0062 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM1_B0062 PF02770 Acyl-CoA dehydrogenase, middle domain AM1_B0062 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM1_B0064 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_B0064 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_B0064 PF01610 Transposase AM1_B0086 PF00216 Bacterial DNA-binding protein AM1_B0087 PF03979 Sigma-70 factor, region 1.1 AM1_B0087 PF04542 Sigma-70 region 2 AM1_B0087 PF04539 Sigma-70 region 3 AM1_B0087 PF04545 Sigma-70, region 4 AM1_B0087 PF00140 Sigma-70 factor, region 1.2 AM1_B0103 PF00583 Acetyltransferase (GNAT) family AM1_B0107 PF13340 Putative transposase of IS4/5 family (DUF4096) AM1_B0109 PF00067 Cytochrome P450 AM1_B0112 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_B0112 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_B0114 PF03928 Haem-degrading AM1_B0119 PF00795 Carbon-nitrogen hydrolase AM1_B0121 PF02472 Biopolymer transport protein ExbD/TolR AM1_B0122 PF01618 MotA/TolQ/ExbB proton channel family AM1_B0123 PF01032 FecCD transport family AM1_B0124 PF00149 Calcineurin-like phosphoesterase AM1_B0127 PF07715 TonB-dependent Receptor Plug Domain AM1_B0127 PF00593 TonB dependent receptor AM1_B0133 PF02798 Glutathione S-transferase, N-terminal domain AM1_B0135 PF00462 Glutaredoxin AM1_B0136 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM1_B0142 PF01475 Ferric uptake regulator family AM1_B0146 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_B0146 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_B0148 PF00437 Type II/IV secretion system protein AM1_B0152 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_B0152 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_B0152 PF01610 Transposase AM1_B0155 PF01022 Bacterial regulatory protein, arsR family AM1_B0156 PF00501 AMP-binding enzyme AM1_B0157 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_B0157 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_B0161 PF01717 Cobalamin-independent synthase, Catalytic domain AM1_B0161 PF08267 Cobalamin-independent synthase, N-terminal domain AM1_B0166 PF01406 tRNA synthetases class I (C) catalytic domain AM1_B0166 PF09190 DALR domain AM1_B0169 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM1_B0169 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM1_B0169 PF03129 Anticodon binding domain AM1_B0169 PF02824 TGS domain AM1_B0170 PF08460 Bacterial SH3 domain AM1_B0170 PF01551 Peptidase family M23 AM1_B0173 PF01227 GTP cyclohydrolase I AM1_B0175 PF01551 Peptidase family M23 AM1_B0177 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AM1_B0179 PF01979 Amidohydrolase family AM1_B0187 PF00589 Phage integrase family AM1_B0187 PF02899 Phage integrase, N-terminal SAM-like domain AM1_B0194 PF02899 Phage integrase, N-terminal SAM-like domain AM1_B0194 PF00589 Phage integrase family AM1_B0196 PF00717 Peptidase S24-like AM1_B0197 PF00485 Phosphoribulokinase / Uridine kinase family AM1_B0206 PF00872 Transposase, Mutator family AM1_B0243 PF01385 Probable transposase AM1_B0243 PF12323 Helix-turn-helix domain AM1_B0243 PF07282 Putative transposase DNA-binding domain AM1_B0264 PF00069 Protein kinase domain AM1_B0264 PF03781 Sulfatase-modifying factor enzyme 1 AM1_B0265 PF03781 Sulfatase-modifying factor enzyme 1 AM1_B0265 PF00069 Protein kinase domain AM1_B0266 PF03781 Sulfatase-modifying factor enzyme 1 AM1_B0266 PF00069 Protein kinase domain AM1_B0270 PF03781 Sulfatase-modifying factor enzyme 1 AM1_B0270 PF00069 Protein kinase domain AM1_B0277 PF04225 Opacity-associated protein A LysM-like domain AM1_B0277 PF01551 Peptidase family M23 AM1_B0294 PF04539 Sigma-70 region 3 AM1_B0294 PF00140 Sigma-70 factor, region 1.2 AM1_B0294 PF04545 Sigma-70, region 4 AM1_B0294 PF04542 Sigma-70 region 2 AM1_B0298 PF03793 PASTA domain AM1_B0298 PF00069 Protein kinase domain AM1_B0302 PF00067 Cytochrome P450 AM1_B0307 PF00931 NB-ARC domain AM1_B0307 PF00400 WD domain, G-beta repeat AM1_B0311 PF05901 Excalibur calcium-binding domain AM1_B0311 PF00565 Staphylococcal nuclease homologue AM1_B0313 PF07411 Domain of unknown function (DUF1508) AM1_B0314 PF00717 Peptidase S24-like AM1_B0315 PF13438 Domain of unknown function (DUF4113) AM1_B0315 PF11799 impB/mucB/samB family C-terminal domain AM1_B0315 PF11798 IMS family HHH motif AM1_B0315 PF00817 impB/mucB/samB family AM1_B0319 PF00805 Pentapeptide repeats (8 copies) AM1_B0319 PF00400 WD domain, G-beta repeat AM1_B0319 PF05729 NACHT domain AM1_B0320 PF00589 Phage integrase family AM1_B0331 PF02899 Phage integrase, N-terminal SAM-like domain AM1_B0331 PF00589 Phage integrase family AM1_B0332 PF01526 Tn3 transposase DDE domain AM1_B0332 PF13700 Domain of unknown function (DUF4158) AM1_B0334 PF01348 Type II intron maturase AM1_B0334 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM1_B0335 PF01526 Tn3 transposase DDE domain AM1_B0335 PF13700 Domain of unknown function (DUF4158) AM1_B0343 PF01850 PIN domain AM1_B0356 PF00264 Common central domain of tyrosinase AM1_B0364 PF05901 Excalibur calcium-binding domain AM1_B0364 PF00565 Staphylococcal nuclease homologue AM1_B0365 PF03781 Sulfatase-modifying factor enzyme 1 AM1_B0374 PF01381 Helix-turn-helix AM1_B0375 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB AM1_B0378 PF01695 IstB-like ATP binding protein AM1_B0379 PF00665 Integrase core domain AM1_B0381 PF02371 Transposase IS116/IS110/IS902 family AM1_B0381 PF01548 Transposase AM1_B0384 PF01610 Transposase AM1_B0384 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_B0384 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_B0389 PF00400 WD domain, G-beta repeat AM1_B0389 PF00931 NB-ARC domain AM1_B0395 PF00082 Subtilase family AM1_B0400 PF02371 Transposase IS116/IS110/IS902 family AM1_B0400 PF01548 Transposase AM1_B0403 PF03400 IS1 transposase AM1_B0404 PF02522 Aminoglycoside 3-N-acetyltransferase AM1_B0409 PF04472 Cell division protein SepF AM1_B0411 PF00912 Transglycosylase AM1_B0411 PF00905 Penicillin binding protein transpeptidase domain AM1_B0413 PF13538 UvrD-like helicase C-terminal domain AM1_B0413 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AM1_B0413 PF14490 Helix-hairpin-helix containing domain AM1_B0414 PF00154 recA bacterial DNA recombination protein AM1_B0417 PF00773 RNB domain AM1_B0417 PF08206 Ribonuclease B OB domain AM1_B0417 PF00575 S1 RNA binding domain AM1_C0014 PF01627 Hpt domain AM1_C0014 PF00512 His Kinase A (phospho-acceptor) domain AM1_C0014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_C0014 PF00072 Response regulator receiver domain AM1_C0016 PF07730 Histidine kinase AM1_C0017 PF00072 Response regulator receiver domain AM1_C0017 PF00196 Bacterial regulatory proteins, luxR family AM1_C0018 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM1_C0019 PF00873 AcrB/AcrD/AcrF family AM1_C0023 PF00072 Response regulator receiver domain AM1_C0023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_C0023 PF01627 Hpt domain AM1_C0023 PF18415 Histidine kinase receptor ArcB trans-membrane domain AM1_C0023 PF00989 PAS fold AM1_C0023 PF00512 His Kinase A (phospho-acceptor) domain AM1_C0028 PF01551 Peptidase family M23 AM1_C0045 PF00795 Carbon-nitrogen hydrolase AM1_C0048 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_C0050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM1_C0050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM1_C0052 PF03466 LysR substrate binding domain AM1_C0052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_C0055 PF03466 LysR substrate binding domain AM1_C0055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_C0058 PF08240 Alcohol dehydrogenase GroES-like domain AM1_C0058 PF00107 Zinc-binding dehydrogenase AM1_C0066 PF01695 IstB-like ATP binding protein AM1_C0067 PF00665 Integrase core domain AM1_C0074 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_C0077 PF00905 Penicillin binding protein transpeptidase domain AM1_C0077 PF00912 Transglycosylase AM1_C0078 PF00665 Integrase core domain AM1_C0079 PF01695 IstB-like ATP binding protein AM1_C0080 PF13276 HTH-like domain AM1_C0080 PF13333 Integrase core domain AM1_C0080 PF00665 Integrase core domain AM1_C0085 PF04029 2-phosphosulpholactate phosphatase AM1_C0086 PF00072 Response regulator receiver domain AM1_C0086 PF00486 Transcriptional regulatory protein, C terminal AM1_C0092 PF00427 Phycobilisome Linker polypeptide AM1_C0093 PF01383 CpcD/allophycocyanin linker domain AM1_C0094 PF00427 Phycobilisome Linker polypeptide AM1_C0094 PF01383 CpcD/allophycocyanin linker domain AM1_C0096 PF00502 Phycobilisome protein AM1_C0098 PF00502 Phycobilisome protein AM1_C0099 PF00502 Phycobilisome protein AM1_C0100 PF00502 Phycobilisome protein AM1_C0101 PF00072 Response regulator receiver domain AM1_C0101 PF00486 Transcriptional regulatory protein, C terminal AM1_C0102 PF00427 Phycobilisome Linker polypeptide AM1_C0105 PF00421 Photosystem II protein AM1_C0108 PF01126 Heme oxygenase AM1_C0117 PF00502 Phycobilisome protein AM1_C0118 PF03130 PBS lyase HEAT-like repeat AM1_C0119 PF06206 CpeT/CpcT family (DUF1001) AM1_C0134 PF02899 Phage integrase, N-terminal SAM-like domain AM1_C0134 PF00589 Phage integrase family AM1_C0139 PF00111 2Fe-2S iron-sulfur cluster binding domain AM1_C0178 PF00171 Aldehyde dehydrogenase family AM1_C0180 PF00072 Response regulator receiver domain AM1_C0191 PF00502 Phycobilisome protein AM1_C0192 PF00502 Phycobilisome protein AM1_C0193 PF00486 Transcriptional regulatory protein, C terminal AM1_C0193 PF00072 Response regulator receiver domain AM1_C0194 PF00486 Transcriptional regulatory protein, C terminal AM1_C0194 PF00072 Response regulator receiver domain AM1_C0203 PF00427 Phycobilisome Linker polypeptide AM1_C0205 PF01126 Heme oxygenase AM1_C0212 PF00502 Phycobilisome protein AM1_C0213 PF00502 Phycobilisome protein AM1_C0215 PF01383 CpcD/allophycocyanin linker domain AM1_C0215 PF00427 Phycobilisome Linker polypeptide AM1_C0216 PF01383 CpcD/allophycocyanin linker domain AM1_C0217 PF09367 CpeS-like protein AM1_C0220 PF04485 Phycobilisome degradation protein nblA AM1_C0236 PF12852 Cupin AM1_C0236 PF12833 Helix-turn-helix domain AM1_C0239 PF00106 short chain dehydrogenase AM1_C0245 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_C0245 PF13359 DDE superfamily endonuclease AM1_C0251 PF00239 Resolvase, N terminal domain AM1_C0251 PF02796 Helix-turn-helix domain of resolvase AM1_C0252 PF13613 Helix-turn-helix of DDE superfamily endonuclease AM1_C0252 PF13359 DDE superfamily endonuclease AM1_C0259 PF01627 Hpt domain AM1_C0259 PF00072 Response regulator receiver domain AM1_C0259 PF00486 Transcriptional regulatory protein, C terminal AM1_C0262 PF00561 alpha/beta hydrolase fold AM1_C0272 PF03130 PBS lyase HEAT-like repeat AM1_C0282 PF00156 Phosphoribosyl transferase domain AM1_C0282 PF05139 Erythromycin esterase AM1_C0285 PF00485 Phosphoribulokinase / Uridine kinase family AM1_C0287 PF13614 AAA domain AM1_C0288 PF02195 ParB-like nuclease domain AM1_C0293 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM1_C0293 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM1_C0295 PF00535 Glycosyl transferase family 2 AM1_C0304 PF00072 Response regulator receiver domain AM1_C0304 PF00486 Transcriptional regulatory protein, C terminal AM1_C0305 PF18719 ArlS sensor domain AM1_C0305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_C0305 PF00512 His Kinase A (phospho-acceptor) domain AM1_C0327 PF13700 Domain of unknown function (DUF4158) AM1_C0327 PF01526 Tn3 transposase DDE domain AM1_C0328 PF01348 Type II intron maturase AM1_C0328 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM1_C0338 PF00216 Bacterial DNA-binding protein AM1_C0339 PF03979 Sigma-70 factor, region 1.1 AM1_C0339 PF04542 Sigma-70 region 2 AM1_C0339 PF00140 Sigma-70 factor, region 1.2 AM1_C0339 PF04545 Sigma-70, region 4 AM1_C0339 PF04539 Sigma-70 region 3 AM1_C0344 PF05163 DinB family AM1_C0353 PF00216 Bacterial DNA-binding protein AM1_C0355 PF04542 Sigma-70 region 2 AM1_C0355 PF00140 Sigma-70 factor, region 1.2 AM1_C0355 PF04539 Sigma-70 region 3 AM1_C0355 PF03979 Sigma-70 factor, region 1.1 AM1_C0355 PF04545 Sigma-70, region 4 AM1_C0360 PF00216 Bacterial DNA-binding protein AM1_C0362 PF01740 STAS domain AM1_C0365 PF00990 Diguanylate cyclase, GGDEF domain AM1_C0365 PF00072 Response regulator receiver domain AM1_C0366 PF17149 Periplasmic sensor domain found in signal transduction proteins AM1_C0366 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_C0366 PF00672 HAMP domain AM1_C0366 PF00072 Response regulator receiver domain AM1_C0366 PF01627 Hpt domain AM1_C0366 PF00512 His Kinase A (phospho-acceptor) domain AM1_D0001 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_D0003 PF00575 S1 RNA binding domain AM1_D0003 PF08206 Ribonuclease B OB domain AM1_D0003 PF00773 RNB domain AM1_D0007 PF04472 Cell division protein SepF AM1_D0011 PF00486 Transcriptional regulatory protein, C terminal AM1_D0011 PF00072 Response regulator receiver domain AM1_D0013 PF04472 Cell division protein SepF AM1_D0020 PF13546 DDE superfamily endonuclease AM1_D0029 PF04539 Sigma-70 region 3 AM1_D0029 PF00140 Sigma-70 factor, region 1.2 AM1_D0029 PF04542 Sigma-70 region 2 AM1_D0029 PF04545 Sigma-70, region 4 AM1_D0031 PF08525 Opacity-associated protein A N-terminal motif AM1_D0031 PF01476 LysM domain AM1_D0031 PF01551 Peptidase family M23 AM1_D0056 PF01695 IstB-like ATP binding protein AM1_D0057 PF18272 single-stranded DNA binding TraI N-terminal subdomain AM1_D0057 PF18340 DNA relaxase TraI 2B/2B-like domain AM1_D0057 PF08751 TrwC relaxase AM1_D0057 PF07057 DNA helicase TraI AM1_D0076 PF03400 IS1 transposase AM1_D0085 PF02151 UvrB/uvrC motif AM1_D0085 PF08459 UvrC Helix-hairpin-helix N-terminal AM1_D0085 PF01541 GIY-YIG catalytic domain AM1_D0087 PF01396 Topoisomerase DNA binding C4 zinc finger AM1_D0087 PF01751 Toprim domain AM1_D0087 PF01131 DNA topoisomerase AM1_D0089 PF04542 Sigma-70 region 2 AM1_D0089 PF03979 Sigma-70 factor, region 1.1 AM1_D0089 PF00140 Sigma-70 factor, region 1.2 AM1_D0089 PF04539 Sigma-70 region 3 AM1_D0089 PF04545 Sigma-70, region 4 AM1_D0093 PF00011 Hsp20/alpha crystallin family AM1_D0103 PF05973 Phage derived protein Gp49-like (DUF891) AM1_D0123 PF13545 Crp-like helix-turn-helix domain AM1_D0123 PF00027 Cyclic nucleotide-binding domain AM1_D0125 PF00072 Response regulator receiver domain AM1_D0128 PF13614 AAA domain AM1_D0134 PF00384 Molybdopterin oxidoreductase AM1_D0134 PF01568 Molydopterin dinucleotide binding domain AM1_D0137 PF13610 DDE domain AM1_D0138 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) AM1_D0143 PF00365 Phosphofructokinase AM1_D0144 PF01924 Hydrogenase formation hypA family AM1_D0147 PF00011 Hsp20/alpha crystallin family AM1_D0148 PF08240 Alcohol dehydrogenase GroES-like domain AM1_D0149 PF00005 ABC transporter AM1_D0154 PF02769 AIR synthase related protein, C-terminal domain AM1_D0154 PF00586 AIR synthase related protein, N-terminal domain AM1_D0156 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM1_D0156 PF02896 PEP-utilising enzyme, TIM barrel domain AM1_D0156 PF00391 PEP-utilising enzyme, mobile domain AM1_D0157 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM1_D0160 PF00999 Sodium/hydrogen exchanger family AM1_D0162 PF00119 ATP synthase A chain AM1_D0163 PF00137 ATP synthase subunit C AM1_D0164 PF00430 ATP synthase B/B' CF(0) AM1_D0165 PF00306 ATP synthase alpha/beta chain, C terminal domain AM1_D0165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM1_D0165 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM1_D0167 PF00231 ATP synthase AM1_D0171 PF01627 Hpt domain AM1_D0171 PF00072 Response regulator receiver domain AM1_D0171 PF00486 Transcriptional regulatory protein, C terminal AM1_D0172 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AM1_D0172 PF01522 Polysaccharide deacetylase AM1_D0173 PF00582 Universal stress protein family AM1_D0175 PF00582 Universal stress protein family AM1_D0177 PF00037 4Fe-4S binding domain AM1_D0177 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM1_D0177 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM1_D0180 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM1_D0182 PF00384 Molybdopterin oxidoreductase AM1_D0182 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM1_D0182 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AM1_D0183 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM1_D0184 PF00571 CBS domain AM1_D0187 PF00374 Nickel-dependent hydrogenase AM1_D0188 PF01455 HupF/HypC family AM1_D0189 PF00708 Acylphosphatase AM1_D0189 PF17788 HypF Kae1-like domain AM1_D0189 PF07503 HypF finger AM1_D0189 PF01300 Telomere recombination AM1_D0192 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_D0193 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AM1_D0197 PF00586 AIR synthase related protein, N-terminal domain AM1_D0197 PF02769 AIR synthase related protein, C-terminal domain AM1_D0198 PF08448 PAS fold AM1_D0198 PF00512 His Kinase A (phospho-acceptor) domain AM1_D0198 PF13188 PAS domain AM1_D0198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_D0198 PF00072 Response regulator receiver domain AM1_D0200 PF00343 Carbohydrate phosphorylase AM1_D0201 PF00140 Sigma-70 factor, region 1.2 AM1_D0201 PF04539 Sigma-70 region 3 AM1_D0201 PF04545 Sigma-70, region 4 AM1_D0201 PF04542 Sigma-70 region 2 AM1_D0204 PF00107 Zinc-binding dehydrogenase AM1_D0204 PF08240 Alcohol dehydrogenase GroES-like domain AM1_D0207 PF00166 Chaperonin 10 Kd subunit AM1_D0208 PF00118 TCP-1/cpn60 chaperonin family AM1_D0209 PF08865 Domain of unknown function (DUF1830) AM1_D0219 PF02899 Phage integrase, N-terminal SAM-like domain AM1_D0219 PF00589 Phage integrase family AM1_D0226 PF13700 Domain of unknown function (DUF4158) AM1_D0226 PF01526 Tn3 transposase DDE domain AM1_D0228 PF00665 Integrase core domain AM1_D0229 PF01695 IstB-like ATP binding protein AM1_D0234 PF00582 Universal stress protein family AM1_D0237 PF00004 ATPase family associated with various cellular activities (AAA) AM1_D0237 PF17862 AAA+ lid domain AM1_D0237 PF01434 Peptidase family M41 AM1_D0238 PF13460 NAD(P)H-binding AM1_D0238 PF11066 Protein of unknown function (DUF2867) AM1_D0243 PF01209 ubiE/COQ5 methyltransferase family AM1_D0245 PF13091 PLD-like domain AM1_D0245 PF13396 Phospholipase_D-nuclease N-terminal AM1_D0254 PF00916 Sulfate permease family AM1_D0254 PF01740 STAS domain AM1_D0256 PF00753 Metallo-beta-lactamase superfamily AM1_D0260 PF02899 Phage integrase, N-terminal SAM-like domain AM1_D0260 PF00589 Phage integrase family AM1_D0265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM1_D0271 PF00762 Ferrochelatase AM1_D0273 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM1_E0008 PF13737 Transposase DDE domain AM1_E0013 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM1_E0014 PF00589 Phage integrase family AM1_E0025 PF00589 Phage integrase family AM1_E0037 PF04545 Sigma-70, region 4 AM1_E0037 PF00140 Sigma-70 factor, region 1.2 AM1_E0037 PF04539 Sigma-70 region 3 AM1_E0037 PF04542 Sigma-70 region 2 AM1_E0037 PF03979 Sigma-70 factor, region 1.1 AM1_E0071 PF08751 TrwC relaxase AM1_E0071 PF07057 DNA helicase TraI AM1_E0071 PF18272 single-stranded DNA binding TraI N-terminal subdomain AM1_E0071 PF18340 DNA relaxase TraI 2B/2B-like domain AM1_E0077 PF00665 Integrase core domain AM1_E0078 PF01695 IstB-like ATP binding protein AM1_E0079 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_E0079 PF01610 Transposase AM1_E0079 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_E0080 PF01695 IstB-like ATP binding protein AM1_E0084 PF00561 alpha/beta hydrolase fold AM1_E0091 PF13614 AAA domain AM1_E0095 PF00773 RNB domain AM1_E0095 PF08206 Ribonuclease B OB domain AM1_E0095 PF17876 Cold shock domain AM1_E0095 PF00575 S1 RNA binding domain AM1_E0096 PF00067 Cytochrome P450 AM1_E0103 PF01638 HxlR-like helix-turn-helix AM1_E0109 PF00400 WD domain, G-beta repeat AM1_E0109 PF00931 NB-ARC domain AM1_E0111 PF02899 Phage integrase, N-terminal SAM-like domain AM1_E0111 PF00589 Phage integrase family AM1_E0115 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal AM1_E0115 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal AM1_E0123 PF06224 Winged helix DNA-binding domain AM1_E0124 PF00154 recA bacterial DNA recombination protein AM1_E0127 PF08206 Ribonuclease B OB domain AM1_E0127 PF00575 S1 RNA binding domain AM1_E0127 PF00773 RNB domain AM1_E0127 PF17876 Cold shock domain AM1_E0129 PF07411 Domain of unknown function (DUF1508) AM1_E0163 PF03979 Sigma-70 factor, region 1.1 AM1_E0163 PF00140 Sigma-70 factor, region 1.2 AM1_E0163 PF04542 Sigma-70 region 2 AM1_E0163 PF04539 Sigma-70 region 3 AM1_E0163 PF04545 Sigma-70, region 4 AM1_E0175 PF01695 IstB-like ATP binding protein AM1_E0176 PF00665 Integrase core domain AM1_E0190 PF18272 single-stranded DNA binding TraI N-terminal subdomain AM1_E0190 PF07057 DNA helicase TraI AM1_E0190 PF18340 DNA relaxase TraI 2B/2B-like domain AM1_E0190 PF08751 TrwC relaxase AM1_E0211 PF01476 LysM domain AM1_E0211 PF08525 Opacity-associated protein A N-terminal motif AM1_E0211 PF01551 Peptidase family M23 AM1_E0213 PF08281 Sigma-70, region 4 AM1_E0213 PF04542 Sigma-70 region 2 AM1_E0215 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AM1_E0216 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AM1_E0220 PF17761 DUF1016 N-terminal domain AM1_E0220 PF06250 YhcG PDDEXK nuclease domain AM1_E0222 PF04539 Sigma-70 region 3 AM1_E0222 PF00140 Sigma-70 factor, region 1.2 AM1_E0222 PF04545 Sigma-70, region 4 AM1_E0222 PF04542 Sigma-70 region 2 AM1_F0003 PF13700 Domain of unknown function (DUF4158) AM1_F0003 PF01526 Tn3 transposase DDE domain AM1_F0004 PF01348 Type II intron maturase AM1_F0004 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM1_F0012 PF00188 Cysteine-rich secretory protein family AM1_F0024 PF00072 Response regulator receiver domain AM1_F0024 PF00486 Transcriptional regulatory protein, C terminal AM1_F0034 PF13545 Crp-like helix-turn-helix domain AM1_F0036 PF13614 AAA domain AM1_F0038 PF12419 SNF2 Helicase protein AM1_F0038 PF00271 Helicase conserved C-terminal domain AM1_F0038 PF00176 SNF2 family N-terminal domain AM1_F0041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM1_F0041 PF00512 His Kinase A (phospho-acceptor) domain AM1_F0042 PF08267 Cobalamin-independent synthase, N-terminal domain AM1_F0042 PF01717 Cobalamin-independent synthase, Catalytic domain AM1_F0044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM1_F0044 PF03466 LysR substrate binding domain AM1_F0047 PF02867 Ribonucleotide reductase, barrel domain AM1_F0047 PF00317 Ribonucleotide reductase, all-alpha domain AM1_F0047 PF03477 ATP cone domain AM1_F0048 PF00268 Ribonucleotide reductase, small chain AM1_F0053 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_F0053 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_F0054 PF00501 AMP-binding enzyme AM1_F0055 PF01022 Bacterial regulatory protein, arsR family AM1_F0057 PF00270 DEAD/DEAH box helicase AM1_F0057 PF18074 Primosomal protein N C-terminal domain AM1_F0057 PF17764 3′ DNA-binding domain (3′BD) AM1_F0057 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AM1_F0057 PF00271 Helicase conserved C-terminal domain AM1_F0058 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AM1_F0059 PF01609 Transposase DDE domain AM1_F0059 PF13808 DDE_Tnp_1-associated AM1_F0060 PF01526 Tn3 transposase DDE domain AM1_F0060 PF13700 Domain of unknown function (DUF4158) AM1_F0061 PF01348 Type II intron maturase AM1_F0061 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM1_F0067 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AM1_F0068 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AM1_F0069 PF03928 Haem-degrading AM1_F0070 PF00437 Type II/IV secretion system protein AM1_F0072 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM1_F0072 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM1_F0075 PF01475 Ferric uptake regulator family AM1_F0077 PF02421 Ferrous iron transport protein B AM1_F0077 PF07670 Nucleoside recognition AM1_F0077 PF07664 Ferrous iron transport protein B C terminus AM1_F0085 PF08264 Anticodon-binding domain of tRNA AM1_F0085 PF09334 tRNA synthetases class I (M) AM1_F0088 PF00805 Pentapeptide repeats (8 copies) AM1_F0088 PF00069 Protein kinase domain AM1_F0094 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_F0094 PF01610 Transposase AM1_F0094 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_F0097 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM1_F0100 PF00994 Probable molybdopterin binding domain AM1_F0101 PF01435 Peptidase family M48 AM1_F0113 PF00486 Transcriptional regulatory protein, C terminal AM1_F0113 PF00072 Response regulator receiver domain AM1_F0120 PF00067 Cytochrome P450 AM1_F0127 PF03793 PASTA domain AM1_F0127 PF00069 Protein kinase domain AM1_F0128 PF00931 NB-ARC domain AM1_F0128 PF00400 WD domain, G-beta repeat AM1_F0144 PF01551 Peptidase family M23 AM1_F0144 PF08460 Bacterial SH3 domain AM1_F0151 PF00665 Integrase core domain AM1_F0152 PF01695 IstB-like ATP binding protein AM1_F0157 PF18272 single-stranded DNA binding TraI N-terminal subdomain AM1_F0157 PF07057 DNA helicase TraI AM1_F0157 PF18340 DNA relaxase TraI 2B/2B-like domain AM1_F0157 PF08751 TrwC relaxase AM1_F0170 PF01809 Putative membrane protein insertion efficiency factor AM1_F0176 PF04545 Sigma-70, region 4 AM1_F0176 PF04542 Sigma-70 region 2 AM1_F0176 PF00140 Sigma-70 factor, region 1.2 AM1_F0176 PF03979 Sigma-70 factor, region 1.1 AM1_F0176 PF04539 Sigma-70 region 3 AM1_F0191 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM1_F0191 PF01348 Type II intron maturase AM1_F0192 PF13700 Domain of unknown function (DUF4158) AM1_F0192 PF01526 Tn3 transposase DDE domain AM1_G0010 PF13676 TIR domain AM1_G0011 PF00400 WD domain, G-beta repeat AM1_G0011 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AM1_G0021 PF03781 Sulfatase-modifying factor enzyme 1 AM1_G0022 PF03781 Sulfatase-modifying factor enzyme 1 AM1_G0023 PF03781 Sulfatase-modifying factor enzyme 1 AM1_G0028 PF13614 AAA domain AM1_G0038 PF13610 DDE domain AM1_G0041 PF00672 HAMP domain AM1_G0041 PF00909 Ammonium Transporter Family AM1_G0047 PF17820 PDZ domain AM1_G0047 PF13180 PDZ domain AM1_G0054 PF04545 Sigma-70, region 4 AM1_G0054 PF04539 Sigma-70 region 3 AM1_G0054 PF00140 Sigma-70 factor, region 1.2 AM1_G0054 PF04542 Sigma-70 region 2 AM1_G0064 PF13546 DDE superfamily endonuclease AM1_G0075 PF01551 Peptidase family M23 AM1_G0080 PF00106 short chain dehydrogenase AM1_G0084 PF00106 short chain dehydrogenase AM1_G0085 PF00106 short chain dehydrogenase AM1_G0098 PF12849 PBP superfamily domain AM1_G0111 PF00069 Protein kinase domain AM1_G0111 PF00805 Pentapeptide repeats (8 copies) AM1_G0114 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) AM1_G0115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM1_G0118 PF00665 Integrase core domain AM1_G0119 PF01695 IstB-like ATP binding protein AM1_G0129 PF16363 GDP-mannose 4,6 dehydratase AM1_G0153 PF01809 Putative membrane protein insertion efficiency factor AM1_G0158 PF00717 Peptidase S24-like AM1_G0159 PF13438 Domain of unknown function (DUF4113) AM1_G0159 PF11799 impB/mucB/samB family C-terminal domain AM1_G0159 PF00817 impB/mucB/samB family AM1_G0162 PF00400 WD domain, G-beta repeat AM1_G0162 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AM1_G0162 PF00400 WD domain, G-beta repeat AM1_G0162 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AM1_G0164 PF00931 NB-ARC domain AM1_G0164 PF00400 WD domain, G-beta repeat AM1_H0001 PF00665 Integrase core domain AM1_H0002 PF01695 IstB-like ATP binding protein AM1_H0003 PF13542 Helix-turn-helix domain of transposase family ISL3 AM1_H0003 PF01610 Transposase AM1_H0003 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AM1_H0028 PF00239 Resolvase, N terminal domain AM1_H0028 PF02796 Helix-turn-helix domain of resolvase AM1_H0058 PF01590 GAF domain AM1_H0058 PF00360 Phytochrome region AM1_H0058 PF00563 EAL domain AM1_H0058 PF00990 Diguanylate cyclase, GGDEF domain AM1_H0059 PF02899 Phage integrase, N-terminal SAM-like domain AM1_H0059 PF00589 Phage integrase family AM1_H0060 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AM1_H0060 PF00400 WD domain, G-beta repeat AM1_H0064 PF13676 TIR domain AM1_H0068 PF00270 DEAD/DEAH box helicase AM1_H0068 PF08148 DSHCT (NUC185) domain AM1_H0068 PF00271 Helicase conserved C-terminal domain AM1_H0072 PF13614 AAA domain AM1_H0074 PF00665 Integrase core domain AM1_H0075 PF01695 IstB-like ATP binding protein AM1_H0091 PF04539 Sigma-70 region 3 AM1_H0091 PF04542 Sigma-70 region 2 AM1_H0091 PF00140 Sigma-70 factor, region 1.2 AM1_H0091 PF04545 Sigma-70, region 4 AM1_H0106 PF01551 Peptidase family M23 AM1_H0116 PF08865 Domain of unknown function (DUF1830)