AM1_0010	PWY-3461	L-tyrosine biosynthesis II
AM1_0010	PWY-3462	L-phenylalanine biosynthesis II
AM1_0010	PWY-6120	L-tyrosine biosynthesis III
AM1_0010	PWY-6627	salinosporamide A biosynthesis
AM1_0010	PWY-7626	bacilysin biosynthesis
AM1_0084	PWY-6749	CMP-legionaminate biosynthesis I
AM1_0090	PWY-5941	glycogen degradation II (eukaryotic)
AM1_0090	PWY-6724	starch degradation II
AM1_0090	PWY-6737	starch degradation V
AM1_0090	PWY-7238	sucrose biosynthesis II
AM1_0110	PWY-7851	AM1_0110
AM1_0112	PWY-6823	molybdenum cofactor biosynthesis
AM1_0134	PWY-2301	<i>myo</i>-inositol biosynthesis
AM1_0134	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
AM1_0134	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
AM1_0134	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
AM1_0134	PWY-6664	di-myo-inositol phosphate biosynthesis
AM1_0140	PWY-2722	trehalose degradation IV
AM1_0140	PWY-2723	trehalose degradation V
AM1_0140	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AM1_0140	PWY-5661	GDP-glucose biosynthesis
AM1_0140	PWY-621	sucrose degradation III (sucrose invertase)
AM1_0140	PWY-7238	sucrose biosynthesis II
AM1_0140	PWY-7385	1,3-propanediol biosynthesis (engineered)
AM1_0188	PWY-6614	tetrahydrofolate biosynthesis
AM1_0255	PWY-5694	allantoin degradation to glyoxylate I
AM1_0255	PWY-5705	allantoin degradation to glyoxylate III
AM1_0334	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
AM1_0336	PWY-381	nitrate reduction II (assimilatory)
AM1_0336	PWY-5675	nitrate reduction V (assimilatory)
AM1_0336	PWY-6549	L-glutamine biosynthesis III
AM1_0336	PWY-6963	ammonia assimilation cycle I
AM1_0336	PWY-6964	ammonia assimilation cycle II
AM1_0404	PWY-3221	dTDP-L-rhamnose biosynthesis II
AM1_0404	PWY-6808	dTDP-D-forosamine biosynthesis
AM1_0404	PWY-6942	dTDP-D-desosamine biosynthesis
AM1_0404	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AM1_0404	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AM1_0404	PWY-6974	dTDP-L-olivose biosynthesis
AM1_0404	PWY-6976	dTDP-L-mycarose biosynthesis
AM1_0404	PWY-7104	dTDP-L-megosamine biosynthesis
AM1_0404	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AM1_0404	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AM1_0404	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AM1_0404	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AM1_0404	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AM1_0404	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AM1_0404	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AM1_0404	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AM1_0404	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AM1_0404	PWY-7688	AM1_0404
AM1_0404	PWY-7814	AM1_0404
AM1_0405	PWY-3221	dTDP-L-rhamnose biosynthesis II
AM1_0405	PWY-6808	dTDP-D-forosamine biosynthesis
AM1_0405	PWY-6942	dTDP-D-desosamine biosynthesis
AM1_0405	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AM1_0405	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AM1_0405	PWY-6974	dTDP-L-olivose biosynthesis
AM1_0405	PWY-6976	dTDP-L-mycarose biosynthesis
AM1_0405	PWY-7104	dTDP-L-megosamine biosynthesis
AM1_0405	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AM1_0405	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AM1_0405	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AM1_0405	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AM1_0405	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AM1_0405	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AM1_0405	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AM1_0405	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AM1_0405	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AM1_0405	PWY-7688	AM1_0405
AM1_0405	PWY-7814	AM1_0405
AM1_0406	PWY-5340	sulfate activation for sulfonation
AM1_0409	PWY-5686	UMP biosynthesis
AM1_0409	PWY-7790	AM1_0409
AM1_0409	PWY-7791	AM1_0409
AM1_0412	PWY-2941	L-lysine biosynthesis II
AM1_0412	PWY-2942	L-lysine biosynthesis III
AM1_0412	PWY-5097	L-lysine biosynthesis VI
AM1_0430	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AM1_0430	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AM1_0430	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AM1_0437	PWY-5392	reductive TCA cycle II
AM1_0437	PWY-5537	pyruvate fermentation to acetate V
AM1_0437	PWY-5538	pyruvate fermentation to acetate VI
AM1_0437	PWY-5690	TCA cycle II (plants and fungi)
AM1_0437	PWY-5913	TCA cycle VI (obligate autotrophs)
AM1_0437	PWY-6728	methylaspartate cycle
AM1_0437	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AM1_0437	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AM1_0439	PWY-5480	pyruvate fermentation to ethanol I
AM1_0439	PWY-5485	pyruvate fermentation to acetate IV
AM1_0439	PWY-5493	reductive monocarboxylic acid cycle
AM1_0440	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_0440	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_0442	PWY-3162	L-tryptophan degradation V (side chain pathway)
AM1_0442	PWY-5057	L-valine degradation II
AM1_0442	PWY-5076	L-leucine degradation III
AM1_0442	PWY-5078	L-isoleucine degradation II
AM1_0442	PWY-5079	L-phenylalanine degradation III
AM1_0442	PWY-5082	L-methionine degradation III
AM1_0442	PWY-5480	pyruvate fermentation to ethanol I
AM1_0442	PWY-5486	pyruvate fermentation to ethanol II
AM1_0442	PWY-5751	phenylethanol biosynthesis
AM1_0442	PWY-6313	serotonin degradation
AM1_0442	PWY-6333	acetaldehyde biosynthesis I
AM1_0442	PWY-6342	noradrenaline and adrenaline degradation
AM1_0442	PWY-6587	pyruvate fermentation to ethanol III
AM1_0442	PWY-6802	salidroside biosynthesis
AM1_0442	PWY-6871	3-methylbutanol biosynthesis
AM1_0442	PWY-7013	L-1,2-propanediol degradation
AM1_0442	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AM1_0442	PWY-7118	chitin degradation to ethanol
AM1_0442	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AM1_0444	PWY-1042	glycolysis IV (plant cytosol)
AM1_0444	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AM1_0444	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_0444	PWY-5723	Rubisco shunt
AM1_0444	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_0444	PWY-6886	1-butanol autotrophic biosynthesis
AM1_0444	PWY-6901	superpathway of glucose and xylose degradation
AM1_0444	PWY-7003	glycerol degradation to butanol
AM1_0444	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AM1_0444	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AM1_0445	PWY-5482	pyruvate fermentation to acetate II
AM1_0445	PWY-5485	pyruvate fermentation to acetate IV
AM1_0445	PWY-5497	purine nucleobases degradation II (anaerobic)
AM1_0448	PWY-101	photosynthesis light reactions
AM1_0450	PWY-101	photosynthesis light reactions
AM1_0459	PWY-723	alkylnitronates degradation
AM1_0466	PWY-5874	heme degradation
AM1_0467	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_0481	PWY-3781	aerobic respiration I (cytochrome c)
AM1_0481	PWY-4521	arsenite oxidation I (respiratory)
AM1_0481	PWY-6692	Fe(II) oxidation
AM1_0481	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AM1_0511	PWY-6854	ethylene biosynthesis III (microbes)
AM1_0520	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AM1_0520	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AM1_0520	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AM1_0521	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AM1_0521	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AM1_0521	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AM1_0529	PWY-5269	cardiolipin biosynthesis II
AM1_0529	PWY-5668	cardiolipin biosynthesis I
AM1_0529	PWY-7817	AM1_0529
AM1_0533	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_0533	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_0549	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AM1_0563	PWY-7560	methylerythritol phosphate pathway II
AM1_0565	PWY-7533	gliotoxin biosynthesis
AM1_0571	PWY-5386	methylglyoxal degradation I
AM1_0584	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AM1_0584	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AM1_0584	PWY-5989	stearate biosynthesis II (bacteria and plants)
AM1_0584	PWY-5994	palmitate biosynthesis I (animals and fungi)
AM1_0584	PWY-6113	superpathway of mycolate biosynthesis
AM1_0584	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AM1_0584	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AM1_0584	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AM1_0584	PWY-7663	gondoate biosynthesis (anaerobic)
AM1_0584	PWY-7664	oleate biosynthesis IV (anaerobic)
AM1_0584	PWY-7858	AM1_0584
AM1_0584	PWYG-321	mycolate biosynthesis
AM1_0588	PWY-6123	inosine-5'-phosphate biosynthesis I
AM1_0588	PWY-6124	inosine-5'-phosphate biosynthesis II
AM1_0588	PWY-7234	inosine-5'-phosphate biosynthesis III
AM1_0594	PWY-4202	arsenate detoxification I (glutaredoxin)
AM1_0594	PWY-4621	arsenate detoxification II (glutaredoxin)
AM1_0602	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AM1_0602	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AM1_0604	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AM1_0604	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AM1_0604	PWY-6896	thiamin salvage I
AM1_0604	PWY-6897	thiamin salvage II
AM1_0608	PWY-6167	flavin biosynthesis II (archaea)
AM1_0608	PWY-6168	flavin biosynthesis III (fungi)
AM1_0608	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AM1_0608	PWY-7991	AM1_0608
AM1_0609	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AM1_0609	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AM1_0615	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_0625	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AM1_0625	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AM1_0637	PWY-1042	glycolysis IV (plant cytosol)
AM1_0637	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_0637	PWY-6886	1-butanol autotrophic biosynthesis
AM1_0637	PWY-6901	superpathway of glucose and xylose degradation
AM1_0637	PWY-7003	glycerol degradation to butanol
AM1_0653	PWY-4381	fatty acid biosynthesis initiation I
AM1_0705	PWY-6871	3-methylbutanol biosynthesis
AM1_0770	PWY-2941	L-lysine biosynthesis II
AM1_0770	PWY-2942	L-lysine biosynthesis III
AM1_0770	PWY-5097	L-lysine biosynthesis VI
AM1_0770	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AM1_0770	PWY-6559	spermidine biosynthesis II
AM1_0770	PWY-6562	norspermidine biosynthesis
AM1_0770	PWY-7153	grixazone biosynthesis
AM1_0770	PWY-7977	AM1_0770
AM1_0782	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AM1_0782	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AM1_0782	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AM1_0791	PWY-2201	folate transformations I
AM1_0791	PWY-3841	folate transformations II
AM1_0850	PWY-5874	heme degradation
AM1_0854	PWY-6832	2-aminoethylphosphonate degradation II
AM1_0855	PWY-6906	chitin derivatives degradation
AM1_0855	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AM1_0855	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AM1_0857	PWY-6123	inosine-5'-phosphate biosynthesis I
AM1_0857	PWY-7234	inosine-5'-phosphate biosynthesis III
AM1_0858	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AM1_0881	PWY-7101	5-deoxystrigol biosynthesis
AM1_0896	PWY-7980	AM1_0896
AM1_0898	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AM1_0935	PWY-6936	seleno-amino acid biosynthesis
AM1_0935	PWY-7274	D-cycloserine biosynthesis
AM1_0935	PWY-7870	AM1_0935
AM1_0943	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AM1_0943	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AM1_0943	PWY-7953	AM1_0943
AM1_0949	PWY-1042	glycolysis IV (plant cytosol)
AM1_0949	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_0949	PWY-6901	superpathway of glucose and xylose degradation
AM1_0949	PWY-7003	glycerol degradation to butanol
AM1_0950	PWY-1042	glycolysis IV (plant cytosol)
AM1_0950	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AM1_0950	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_0950	PWY-5723	Rubisco shunt
AM1_0950	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_0950	PWY-6886	1-butanol autotrophic biosynthesis
AM1_0950	PWY-6901	superpathway of glucose and xylose degradation
AM1_0950	PWY-7003	glycerol degradation to butanol
AM1_0950	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AM1_0950	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AM1_0996	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AM1_0996	PWY-622	starch biosynthesis
AM1_0996	PWY-7900	AM1_0996
AM1_1002	PWY-6936	seleno-amino acid biosynthesis
AM1_1002	PWY-7274	D-cycloserine biosynthesis
AM1_1002	PWY-7870	AM1_1002
AM1_1006	PWY-3341	L-proline biosynthesis III
AM1_1006	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AM1_1010	PWY-6167	flavin biosynthesis II (archaea)
AM1_1010	PWY-6168	flavin biosynthesis III (fungi)
AM1_1013	PWY-7805	AM1_1013
AM1_1013	PWY-7807	AM1_1013
AM1_1019	PWY-5064	chlorophyll <i>a</i> biosynthesis II
AM1_1019	PWY-5068	chlorophyll cycle
AM1_1019	PWY-5086	chlorophyll <i>a</i> biosynthesis I
AM1_1019	PWY-7764	AM1_1019
AM1_1062	PWY-7799	AM1_1062
AM1_1062	PWY-7800	AM1_1062
AM1_1064	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AM1_1068	PWY-5316	nicotine biosynthesis
AM1_1068	PWY-7342	superpathway of nicotine biosynthesis
AM1_1083	PWY-101	photosynthesis light reactions
AM1_1085	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_1085	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_1094	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AM1_1108	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AM1_1109	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AM1_1109	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AM1_1109	PWY-6406	salicylate biosynthesis I
AM1_1110	PWY-5027	phylloquinol biosynthesis
AM1_1113	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AM1_1113	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AM1_1113	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AM1_1118	PWY-622	starch biosynthesis
AM1_1139	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AM1_1159	PWY-3961	phosphopantothenate biosynthesis II
AM1_1193	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AM1_1193	PWY-581	indole-3-acetate biosynthesis II
AM1_1193	PWY-7308	acrylonitrile degradation I
AM1_1194	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AM1_1194	PWY-581	indole-3-acetate biosynthesis II
AM1_1194	PWY-7308	acrylonitrile degradation I
AM1_1195	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AM1_1195	PWY-581	indole-3-acetate biosynthesis II
AM1_1195	PWY-7308	acrylonitrile degradation I
AM1_1221	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AM1_1231	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AM1_1231	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AM1_1237	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
AM1_1256	PWY-2201	folate transformations I
AM1_1256	PWY-3841	folate transformations II
AM1_1256	PWY-7977	AM1_1256
AM1_1264	PWY-6832	2-aminoethylphosphonate degradation II
AM1_1276	PWY-7651	heparan sulfate degradation
AM1_1382	PWY-6823	molybdenum cofactor biosynthesis
AM1_1388	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AM1_1388	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AM1_1389	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AM1_1389	PWY-6164	3-dehydroquinate biosynthesis I
AM1_1389	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AM1_1394	PWY-5392	reductive TCA cycle II
AM1_1394	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AM1_1394	PWY-5690	TCA cycle II (plants and fungi)
AM1_1394	PWY-5913	TCA cycle VI (obligate autotrophs)
AM1_1394	PWY-6728	methylaspartate cycle
AM1_1394	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AM1_1394	PWY-7254	TCA cycle VII (acetate-producers)
AM1_1394	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AM1_1399	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_1399	PWY-5723	Rubisco shunt
AM1_1415	PWY-5659	GDP-mannose biosynthesis
AM1_1415	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AM1_1417	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AM1_1430	PWY-5958	acridone alkaloid biosynthesis
AM1_1430	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AM1_1430	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AM1_1431	PWY-7039	phosphatidate metabolism, as a signaling molecule
AM1_1431	PWY-7817	AM1_1431
AM1_1434	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AM1_1434	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AM1_1434	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AM1_1435	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AM1_1435	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AM1_1435	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AM1_1438	PWY-6938	NADH repair
AM1_1444	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_1444	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_1445	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_1445	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_1450	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_1450	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_1450	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_1450	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_1482	PWY-5331	taurine biosynthesis
AM1_1490	PWY-7183	pyrimidine nucleobases salvage I
AM1_1491	PWY-6475	<i>trans</i>-lycopene biosynthesis II (plants)
AM1_1497	PWY-381	nitrate reduction II (assimilatory)
AM1_1497	PWY-5675	nitrate reduction V (assimilatory)
AM1_1497	PWY-6549	L-glutamine biosynthesis III
AM1_1497	PWY-6963	ammonia assimilation cycle I
AM1_1497	PWY-6964	ammonia assimilation cycle II
AM1_1506	PWY-1042	glycolysis IV (plant cytosol)
AM1_1506	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_1506	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_1506	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_1506	PWY-7385	1,3-propanediol biosynthesis (engineered)
AM1_1510	PWY-6840	homoglutathione biosynthesis
AM1_1510	PWY-7255	ergothioneine biosynthesis I (bacteria)
AM1_1525	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AM1_1525	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AM1_1539	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_1539	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_1573	PWY-5350	thiosulfate disproportionation III (rhodanese)
AM1_1573	PWY-7927	AM1_1573
AM1_1585	PWY-5152	leucodelphinidin biosynthesis
AM1_1630	PWY-5747	2-methylcitrate cycle II
AM1_1640	PWY-5686	UMP biosynthesis
AM1_1643	PWY-1042	glycolysis IV (plant cytosol)
AM1_1643	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AM1_1643	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_1643	PWY-5723	Rubisco shunt
AM1_1643	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_1643	PWY-6886	1-butanol autotrophic biosynthesis
AM1_1643	PWY-6901	superpathway of glucose and xylose degradation
AM1_1643	PWY-7003	glycerol degradation to butanol
AM1_1643	PWY-7124	ethylene biosynthesis V (engineered)
AM1_1643	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AM1_1645	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_1645	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_1655	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_1655	PWY-5723	Rubisco shunt
AM1_1658	PWY-40	putrescine biosynthesis I
AM1_1658	PWY-43	putrescine biosynthesis II
AM1_1658	PWY-6305	putrescine biosynthesis IV
AM1_1658	PWY-6834	spermidine biosynthesis III
AM1_1660	PWY-101	photosynthesis light reactions
AM1_1685	PWY-7902	AM1_1685
AM1_1688	PWY-4261	glycerol degradation I
AM1_1691	PWY-7902	AM1_1691
AM1_1693	PWY-6349	CDP-archaeol biosynthesis
AM1_1698	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AM1_1698	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AM1_1703	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_1703	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_1703	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_1703	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_1704	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AM1_1704	PWY-6269	adenosylcobalamin salvage from cobinamide II
AM1_1704	PWY-7961	AM1_1704
AM1_1704	PWY-7963	AM1_1704
AM1_1704	PWY-7964	AM1_1704
AM1_1704	PWY-7965	AM1_1704
AM1_1704	PWY-7966	AM1_1704
AM1_1704	PWY-7967	AM1_1704
AM1_1704	PWY-7968	AM1_1704
AM1_1704	PWY-7969	AM1_1704
AM1_1704	PWY-7970	AM1_1704
AM1_1704	PWY-7975	AM1_1704
AM1_1733	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AM1_1737	PWY-2161	folate polyglutamylation
AM1_1744	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_1744	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_1744	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_1744	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_1749	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_1749	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_1749	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_1749	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_1752	PWY-7560	methylerythritol phosphate pathway II
AM1_1781	PWY-5532	adenosine nucleotides degradation IV
AM1_1781	PWY-5723	Rubisco shunt
AM1_1783	PWY-5532	adenosine nucleotides degradation IV
AM1_1783	PWY-5723	Rubisco shunt
AM1_1785	PWY-5532	adenosine nucleotides degradation IV
AM1_1785	PWY-5723	Rubisco shunt
AM1_1799	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AM1_1799	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AM1_1799	PWY-7953	AM1_1799
AM1_1800	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AM1_1800	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AM1_1800	PWY-7953	AM1_1800
AM1_1811	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_1811	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_1811	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_1811	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_1832	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_1832	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_1839	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AM1_1880	PWY-5097	L-lysine biosynthesis VI
AM1_1881	PWY-5350	thiosulfate disproportionation III (rhodanese)
AM1_1881	PWY-7927	AM1_1881
AM1_1883	PWY-5686	UMP biosynthesis
AM1_1883	PWY-7790	AM1_1883
AM1_1883	PWY-7791	AM1_1883
AM1_1929	PWY-622	starch biosynthesis
AM1_1929	PWY-7902	AM1_1929
AM1_1938	PWY-1622	formaldehyde assimilation I (serine pathway)
AM1_1938	PWY-181	photorespiration
AM1_1938	PWY-2161	folate polyglutamylation
AM1_1938	PWY-2201	folate transformations I
AM1_1938	PWY-3661	glycine betaine degradation I
AM1_1938	PWY-3661-1	glycine betaine degradation II (mammalian)
AM1_1938	PWY-3841	folate transformations II
AM1_1938	PWY-5497	purine nucleobases degradation II (anaerobic)
AM1_1939	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_1939	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_1939	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_1943	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AM1_1943	PWY-6416	quinate degradation II
AM1_1943	PWY-6707	gallate biosynthesis
AM1_1957	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AM1_1957	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AM1_1957	PWY-6897	thiamin salvage II
AM1_1957	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AM1_1957	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AM1_1957	PWY-7356	thiamin salvage IV (yeast)
AM1_1957	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AM1_1969	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AM1_1969	PWY-6148	tetrahydromethanopterin biosynthesis
AM1_1969	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AM1_1969	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AM1_1969	PWY-7852	AM1_1969
AM1_1969	PWY-7853	AM1_1969
AM1_1983	PWY-6167	flavin biosynthesis II (archaea)
AM1_1983	PWY-6168	flavin biosynthesis III (fungi)
AM1_1983	PWY-7980	AM1_1983
AM1_2009	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_2011	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_2011	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_2011	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_2011	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_2014	PWY-3341	L-proline biosynthesis III
AM1_2014	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AM1_2022	PWY-622	starch biosynthesis
AM1_2033	PWY-5169	cyanurate degradation
AM1_2033	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AM1_2036	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AM1_2036	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AM1_2036	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AM1_2036	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AM1_2036	PWY-6978	plastoquinol-9 biosynthesis II
AM1_2045	PWY-101	photosynthesis light reactions
AM1_2048	PWY-6654	phosphopantothenate biosynthesis III
AM1_2060	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_2060	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_2060	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_2069	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AM1_2103	PWY-5941	glycogen degradation II (eukaryotic)
AM1_2103	PWY-6724	starch degradation II
AM1_2103	PWY-6737	starch degradation V
AM1_2103	PWY-7238	sucrose biosynthesis II
AM1_2110	PWY-6012	acyl carrier protein metabolism I
AM1_2114	PWY-5941	glycogen degradation II (eukaryotic)
AM1_2114	PWY-6731	starch degradation III
AM1_2114	PWY-6737	starch degradation V
AM1_2114	PWY-7238	sucrose biosynthesis II
AM1_2118	PWY-5101	L-isoleucine biosynthesis II
AM1_2118	PWY-5103	L-isoleucine biosynthesis III
AM1_2118	PWY-5104	L-isoleucine biosynthesis IV
AM1_2118	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AM1_2118	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AM1_2118	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AM1_2118	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AM1_2126	PWY-3781	aerobic respiration I (cytochrome c)
AM1_2126	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AM1_2126	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AM1_2126	PWY-6692	Fe(II) oxidation
AM1_2135	PWY-1622	formaldehyde assimilation I (serine pathway)
AM1_2135	PWY-5392	reductive TCA cycle II
AM1_2135	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AM1_2135	PWY-5690	TCA cycle II (plants and fungi)
AM1_2135	PWY-5913	TCA cycle VI (obligate autotrophs)
AM1_2135	PWY-6728	methylaspartate cycle
AM1_2135	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AM1_2135	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AM1_2135	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AM1_2148	PWY-1361	benzoyl-CoA degradation I (aerobic)
AM1_2148	PWY-5109	2-methylbutanoate biosynthesis
AM1_2148	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AM1_2148	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AM1_2148	PWY-5177	glutaryl-CoA degradation
AM1_2148	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AM1_2148	PWY-6435	4-hydroxybenzoate biosynthesis V
AM1_2148	PWY-6583	pyruvate fermentation to butanol I
AM1_2148	PWY-6863	pyruvate fermentation to hexanol
AM1_2148	PWY-6883	pyruvate fermentation to butanol II
AM1_2148	PWY-6944	androstenedione degradation
AM1_2148	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AM1_2148	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AM1_2148	PWY-7007	methyl ketone biosynthesis
AM1_2148	PWY-7046	4-coumarate degradation (anaerobic)
AM1_2148	PWY-7094	fatty acid salvage
AM1_2148	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AM1_2148	PWY-735	jasmonic acid biosynthesis
AM1_2148	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AM1_2148	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AM1_2148	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AM1_2148	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AM1_2148	PWY-7726	AM1_2148
AM1_2148	PWY-7778	AM1_2148
AM1_2148	PWY-7779	AM1_2148
AM1_2150	PWY-7094	fatty acid salvage
AM1_2150	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AM1_2166	PWY-101	photosynthesis light reactions
AM1_2170	PWY-6749	CMP-legionaminate biosynthesis I
AM1_2172	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AM1_2172	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AM1_2172	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AM1_2188	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
AM1_2188	PWY-5940	streptomycin biosynthesis
AM1_2194	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AM1_2195	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AM1_2195	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AM1_2196	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AM1_2196	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AM1_2209	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_2209	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_2209	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_2209	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_2262	PWY-6832	2-aminoethylphosphonate degradation II
AM1_2282	PWY-622	starch biosynthesis
AM1_2282	PWY-7902	AM1_2282
AM1_2283	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_2296	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AM1_2296	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AM1_2296	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AM1_2307	PWY-7805	AM1_2307
AM1_2307	PWY-7807	AM1_2307
AM1_2309	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AM1_2311	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_2311	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_2333	PWY-3461	L-tyrosine biosynthesis II
AM1_2333	PWY-3462	L-phenylalanine biosynthesis II
AM1_2333	PWY-6120	L-tyrosine biosynthesis III
AM1_2333	PWY-6627	salinosporamide A biosynthesis
AM1_2333	PWY-7626	bacilysin biosynthesis
AM1_2342	PWY-6703	preQ<sub>0</sub> biosynthesis
AM1_2344	PWY-6703	preQ<sub>0</sub> biosynthesis
AM1_2349	PWY-2941	L-lysine biosynthesis II
AM1_2349	PWY-5097	L-lysine biosynthesis VI
AM1_2358	PWY-5155	&beta;-alanine biosynthesis III
AM1_2366	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AM1_2366	PWY-7820	AM1_2366
AM1_2367	PWY-6454	vancomycin resistance I
AM1_2367	PWY-6455	vancomycin resistance II
AM1_2383	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AM1_2383	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_2383	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AM1_2383	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AM1_2383	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_2383	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_2383	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_2383	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AM1_2413	PWY-6891	thiazole biosynthesis II (Bacillus)
AM1_2413	PWY-6892	thiazole biosynthesis I (E. coli)
AM1_2413	PWY-7560	methylerythritol phosphate pathway II
AM1_2414	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AM1_2415	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_2415	PWY-5723	Rubisco shunt
AM1_2417	PWY-6936	seleno-amino acid biosynthesis
AM1_2422	PWY-7158	L-phenylalanine degradation V
AM1_2437	PWY-7805	AM1_2437
AM1_2437	PWY-7807	AM1_2437
AM1_2444	PWY-6910	hydroxymethylpyrimidine salvage
AM1_2444	PWY-7356	thiamin salvage IV (yeast)
AM1_2444	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AM1_2448	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AM1_2448	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AM1_2457	PWY-101	photosynthesis light reactions
AM1_2458	PWY-101	photosynthesis light reactions
AM1_2463	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AM1_2463	PWY-3162	L-tryptophan degradation V (side chain pathway)
AM1_2463	PWY-5057	L-valine degradation II
AM1_2463	PWY-5076	L-leucine degradation III
AM1_2463	PWY-5078	L-isoleucine degradation II
AM1_2463	PWY-5079	L-phenylalanine degradation III
AM1_2463	PWY-5082	L-methionine degradation III
AM1_2463	PWY-5480	pyruvate fermentation to ethanol I
AM1_2463	PWY-5486	pyruvate fermentation to ethanol II
AM1_2463	PWY-5751	phenylethanol biosynthesis
AM1_2463	PWY-6313	serotonin degradation
AM1_2463	PWY-6333	acetaldehyde biosynthesis I
AM1_2463	PWY-6342	noradrenaline and adrenaline degradation
AM1_2463	PWY-6587	pyruvate fermentation to ethanol III
AM1_2463	PWY-6802	salidroside biosynthesis
AM1_2463	PWY-6871	3-methylbutanol biosynthesis
AM1_2463	PWY-7013	L-1,2-propanediol degradation
AM1_2463	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AM1_2463	PWY-7118	chitin degradation to ethanol
AM1_2463	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AM1_2463	PWY-7798	AM1_2463
AM1_2475	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_2475	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_2475	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_2475	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_2497	PWY-3781	aerobic respiration I (cytochrome c)
AM1_2497	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AM1_2497	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AM1_2497	PWY-6692	Fe(II) oxidation
AM1_2527	PWY-3801	sucrose degradation II (sucrose synthase)
AM1_2527	PWY-6527	stachyose degradation
AM1_2527	PWY-7238	sucrose biosynthesis II
AM1_2527	PWY-7343	UDP-glucose biosynthesis
AM1_2527	PWY-7817	AM1_2527
AM1_2536	PWY-5098	chlorophyll <i>a</i> degradation I
AM1_2536	PWY-6927	chlorophyll <i>a</i> degradation II
AM1_2536	PWY-7164	chlorophyll <i>a</i> degradation III
AM1_2595	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AM1_2595	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AM1_2595	PWY-7953	AM1_2595
AM1_2612	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AM1_2612	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AM1_2612	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AM1_2613	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AM1_2613	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AM1_2613	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AM1_2613	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AM1_2620	PWY-7205	CMP phosphorylation
AM1_2626	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AM1_2635	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_2637	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AM1_2637	PWY-6855	chitin degradation I (archaea)
AM1_2637	PWY-6906	chitin derivatives degradation
AM1_2650	PWY-5381	pyridine nucleotide cycling (plants)
AM1_2650	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AM1_2650	PWY-6596	adenosine nucleotides degradation I
AM1_2650	PWY-6606	guanosine nucleotides degradation II
AM1_2650	PWY-6607	guanosine nucleotides degradation I
AM1_2650	PWY-6608	guanosine nucleotides degradation III
AM1_2650	PWY-7185	UTP and CTP dephosphorylation I
AM1_2650	PWY-7821	AM1_2650
AM1_2652	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AM1_2652	PWY-6167	flavin biosynthesis II (archaea)
AM1_2652	PWY-6168	flavin biosynthesis III (fungi)
AM1_2652	PWY-7863	AM1_2652
AM1_2660	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AM1_2702	PWY-4261	glycerol degradation I
AM1_2702	PWY-6118	glycerol-3-phosphate shuttle
AM1_2702	PWY-6952	glycerophosphodiester degradation
AM1_2748	PWY-5108	L-isoleucine biosynthesis V
AM1_2748	PWY-5132	humulone biosynthesis
AM1_2748	PWY-5133	cohumulone biosynthesis
AM1_2748	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AM1_2748	PWY-7118	chitin degradation to ethanol
AM1_2748	PWY-7857	AM1_2748
AM1_2753	PWY-7511	protein ubiquitylation
AM1_2770	PWY-7851	AM1_2770
AM1_2789	PWY-7884	AM1_2789
AM1_2790	PWY-3121	linamarin degradation
AM1_2790	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AM1_2790	PWY-6002	lotaustralin degradation
AM1_2790	PWY-6788	cellulose degradation II (fungi)
AM1_2790	PWY-7091	linustatin bioactivation
AM1_2790	PWY-7092	neolinustatin bioactivation
AM1_2790	PWY-7913	AM1_2790
AM1_2796	PWY-1001	cellulose biosynthesis
AM1_2814	PWY-6807	xyloglucan degradation II (exoglucanase)
AM1_2816	PWY-6788	cellulose degradation II (fungi)
AM1_2840	PWY-7883	AM1_2840
AM1_2844	PWY-4381	fatty acid biosynthesis initiation I
AM1_2853	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AM1_2853	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AM1_2853	PWY-7953	AM1_2853
AM1_2875	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_2876	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_2876	PWY-5723	Rubisco shunt
AM1_2877	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AM1_2884	PWY-7238	sucrose biosynthesis II
AM1_2884	PWY-7347	sucrose biosynthesis III
AM1_2889	PWY-101	photosynthesis light reactions
AM1_2891	PWY-7805	AM1_2891
AM1_2891	PWY-7807	AM1_2891
AM1_2907	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AM1_2912	PWY-5963	thio-molybdenum cofactor biosynthesis
AM1_2914	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AM1_2914	PWY-7177	UTP and CTP dephosphorylation II
AM1_2914	PWY-7185	UTP and CTP dephosphorylation I
AM1_2915	PWY-7560	methylerythritol phosphate pathway II
AM1_2941	PWY-101	photosynthesis light reactions
AM1_2942	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AM1_2945	PWY-6605	adenine and adenosine salvage II
AM1_2945	PWY-6610	adenine and adenosine salvage IV
AM1_2945	PWY-7805	AM1_2945
AM1_2945	PWY-7807	AM1_2945
AM1_2962	PWY-6854	ethylene biosynthesis III (microbes)
AM1_2984	PWY-6683	sulfate reduction III (assimilatory)
AM1_3002	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AM1_3003	PWY-5098	chlorophyll <i>a</i> degradation I
AM1_3003	PWY-6927	chlorophyll <i>a</i> degradation II
AM1_3003	PWY-7164	chlorophyll <i>a</i> degradation III
AM1_3052	PWY-5532	adenosine nucleotides degradation IV
AM1_3052	PWY-5723	Rubisco shunt
AM1_3054	PWY-2582	brassinosteroid biosynthesis II
AM1_3054	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AM1_3054	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AM1_3054	PWY-6948	sitosterol degradation to androstenedione
AM1_3054	PWY-699	brassinosteroid biosynthesis I
AM1_3054	PWY-7299	progesterone biosynthesis
AM1_3056	PWY-5663	tetrahydrobiopterin biosynthesis I
AM1_3056	PWY-5664	tetrahydrobiopterin biosynthesis II
AM1_3056	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AM1_3056	PWY-6703	preQ<sub>0</sub> biosynthesis
AM1_3056	PWY-6983	tetrahydrobiopterin biosynthesis III
AM1_3056	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AM1_3056	PWY-7852	AM1_3056
AM1_3071	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AM1_3071	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AM1_3076	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AM1_3076	PWY-5491	diethylphosphate degradation
AM1_3085	PWY-5101	L-isoleucine biosynthesis II
AM1_3085	PWY-5103	L-isoleucine biosynthesis III
AM1_3085	PWY-5104	L-isoleucine biosynthesis IV
AM1_3085	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AM1_3085	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AM1_3085	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AM1_3085	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AM1_3088	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AM1_3088	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AM1_3089	PWY-6823	molybdenum cofactor biosynthesis
AM1_3089	PWY-7887	AM1_3089
AM1_3124	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AM1_3124	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AM1_3124	PWY-7953	AM1_3124
AM1_3127	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_3127	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_3143	PWY-5101	L-isoleucine biosynthesis II
AM1_3143	PWY-5103	L-isoleucine biosynthesis III
AM1_3143	PWY-5104	L-isoleucine biosynthesis IV
AM1_3143	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AM1_3146	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AM1_3154	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AM1_3154	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AM1_3154	PWY-5989	stearate biosynthesis II (bacteria and plants)
AM1_3154	PWY-6113	superpathway of mycolate biosynthesis
AM1_3154	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AM1_3154	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AM1_3154	PWY-7663	gondoate biosynthesis (anaerobic)
AM1_3154	PWY-7664	oleate biosynthesis IV (anaerobic)
AM1_3154	PWY-7858	AM1_3154
AM1_3154	PWYG-321	mycolate biosynthesis
AM1_3157	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AM1_3169	PWY-3801	sucrose degradation II (sucrose synthase)
AM1_3169	PWY-6527	stachyose degradation
AM1_3169	PWY-7238	sucrose biosynthesis II
AM1_3169	PWY-7343	UDP-glucose biosynthesis
AM1_3169	PWY-7817	AM1_3169
AM1_3209	PWY-6683	sulfate reduction III (assimilatory)
AM1_3303	PWY-7892	AM1_3303
AM1_3305	PWY-6167	flavin biosynthesis II (archaea)
AM1_3315	PWY-1042	glycolysis IV (plant cytosol)
AM1_3315	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AM1_3315	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_3315	PWY-5723	Rubisco shunt
AM1_3315	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_3315	PWY-6886	1-butanol autotrophic biosynthesis
AM1_3315	PWY-6901	superpathway of glucose and xylose degradation
AM1_3315	PWY-7003	glycerol degradation to butanol
AM1_3315	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AM1_3315	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AM1_3345	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_3345	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_3345	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_3345	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_3372	PWY-1042	glycolysis IV (plant cytosol)
AM1_3372	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_3372	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_3372	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_3372	PWY-7385	1,3-propanediol biosynthesis (engineered)
AM1_3425	PWY-7883	AM1_3425
AM1_3435	PWY-6749	CMP-legionaminate biosynthesis I
AM1_3437	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_3437	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_3445	PWY-2941	L-lysine biosynthesis II
AM1_3445	PWY-2942	L-lysine biosynthesis III
AM1_3445	PWY-5097	L-lysine biosynthesis VI
AM1_3447	PWY-2941	L-lysine biosynthesis II
AM1_3447	PWY-2942	L-lysine biosynthesis III
AM1_3447	PWY-5097	L-lysine biosynthesis VI
AM1_3447	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AM1_3447	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AM1_3447	PWY-6559	spermidine biosynthesis II
AM1_3447	PWY-6562	norspermidine biosynthesis
AM1_3447	PWY-7153	grixazone biosynthesis
AM1_3447	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AM1_3447	PWY-7977	AM1_3447
AM1_3470	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AM1_3470	PWY-5743	3-hydroxypropanoate cycle
AM1_3470	PWY-5744	glyoxylate assimilation
AM1_3470	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AM1_3470	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_3470	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AM1_3470	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AM1_3499	PWY-6483	ceramide degradation
AM1_3499	PWY-7119	sphingolipid recycling and degradation (yeast)
AM1_3514	PWY-4381	fatty acid biosynthesis initiation I
AM1_3514	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AM1_3514	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AM1_3515	PWY-5667	CDP-diacylglycerol biosynthesis I
AM1_3515	PWY-5981	CDP-diacylglycerol biosynthesis III
AM1_3515	PWY-6453	stigma estolide biosynthesis
AM1_3515	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AM1_3515	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AM1_3515	PWY-7587	oleate biosynthesis III (cyanobacteria)
AM1_3515	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
AM1_3515	PWY-7782	AM1_3515
AM1_3519	PWY-6655	xanthan biosynthesis
AM1_3519	PWY-6658	acetan biosynthesis
AM1_3531	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AM1_3536	PWY-6717	(1,4)-&beta;-xylan degradation
AM1_3536	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AM1_3576	PWY-6349	CDP-archaeol biosynthesis
AM1_3599	PWY-6891	thiazole biosynthesis II (Bacillus)
AM1_3599	PWY-6892	thiazole biosynthesis I (E. coli)
AM1_3642	PWY-5101	L-isoleucine biosynthesis II
AM1_3642	PWY-6871	3-methylbutanol biosynthesis
AM1_3646	PWY-5057	L-valine degradation II
AM1_3646	PWY-5076	L-leucine degradation III
AM1_3646	PWY-5078	L-isoleucine degradation II
AM1_3646	PWY-5101	L-isoleucine biosynthesis II
AM1_3646	PWY-5103	L-isoleucine biosynthesis III
AM1_3646	PWY-5104	L-isoleucine biosynthesis IV
AM1_3646	PWY-5108	L-isoleucine biosynthesis V
AM1_3646	PWY-7767	AM1_3646
AM1_3650	PWY-5656	mannosylglycerate biosynthesis I
AM1_3652	PWY-7884	AM1_3652
AM1_3665	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_3667	PWY-3781	aerobic respiration I (cytochrome c)
AM1_3667	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AM1_3667	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AM1_3667	PWY-5690	TCA cycle II (plants and fungi)
AM1_3667	PWY-6728	methylaspartate cycle
AM1_3667	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AM1_3667	PWY-7254	TCA cycle VII (acetate-producers)
AM1_3667	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AM1_3669	PWY-6854	ethylene biosynthesis III (microbes)
AM1_3674	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_3674	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_3681	PWY-4081	glutathione redox reactions I
AM1_3703	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AM1_3703	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AM1_3710	PWY-7511	protein ubiquitylation
AM1_3715	PWY-5506	methanol oxidation to formaldehyde IV
AM1_3733	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AM1_3733	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AM1_3733	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_3733	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_3733	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AM1_3733	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AM1_3733	PWY-7205	CMP phosphorylation
AM1_3733	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AM1_3733	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_3733	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AM1_3733	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_3733	PWY-7224	purine deoxyribonucleosides salvage
AM1_3733	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_3733	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AM1_3753	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AM1_3776	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AM1_3776	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AM1_3823	PWY-5027	phylloquinol biosynthesis
AM1_3823	PWY-5839	menaquinol-7 biosynthesis
AM1_3823	PWY-5844	menaquinol-9 biosynthesis
AM1_3823	PWY-5849	menaquinol-6 biosynthesis
AM1_3823	PWY-5890	menaquinol-10 biosynthesis
AM1_3823	PWY-5891	menaquinol-11 biosynthesis
AM1_3823	PWY-5892	menaquinol-12 biosynthesis
AM1_3823	PWY-5895	menaquinol-13 biosynthesis
AM1_3850	PWY-6700	queuosine biosynthesis
AM1_3853	PWY-7991	AM1_3853
AM1_3880	PWY-6683	sulfate reduction III (assimilatory)
AM1_3882	PWY-4381	fatty acid biosynthesis initiation I
AM1_3882	PWY-5743	3-hydroxypropanoate cycle
AM1_3882	PWY-5744	glyoxylate assimilation
AM1_3882	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AM1_3882	PWY-6722	candicidin biosynthesis
AM1_3892	PWY-6829	tRNA methylation (yeast)
AM1_3897	PWY-5279	sulfite oxidation II
AM1_3908	PWY-5098	chlorophyll <i>a</i> degradation I
AM1_3908	PWY-6927	chlorophyll <i>a</i> degradation II
AM1_3908	PWY-7164	chlorophyll <i>a</i> degradation III
AM1_3918	PWY-6502	oxidized GTP and dGTP detoxification
AM1_3926	PWY-6012	acyl carrier protein metabolism I
AM1_3926	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AM1_3926	PWY-6289	petrobactin biosynthesis
AM1_3940	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AM1_3944	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AM1_3944	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AM1_3947	PWY-1042	glycolysis IV (plant cytosol)
AM1_3947	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_3947	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_3947	PWY-7385	1,3-propanediol biosynthesis (engineered)
AM1_3965	PWY-5316	nicotine biosynthesis
AM1_3965	PWY-7342	superpathway of nicotine biosynthesis
AM1_3968	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AM1_3978	PWY-1042	glycolysis IV (plant cytosol)
AM1_3978	PWY-1622	formaldehyde assimilation I (serine pathway)
AM1_3978	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AM1_3978	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_3978	PWY-5723	Rubisco shunt
AM1_3978	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_3978	PWY-6886	1-butanol autotrophic biosynthesis
AM1_3978	PWY-6901	superpathway of glucose and xylose degradation
AM1_3978	PWY-7003	glycerol degradation to butanol
AM1_3978	PWY-7124	ethylene biosynthesis V (engineered)
AM1_3978	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AM1_3979	PWY-5386	methylglyoxal degradation I
AM1_3984	PWY-7560	methylerythritol phosphate pathway II
AM1_3989	PWY-2301	<i>myo</i>-inositol biosynthesis
AM1_3989	PWY-4702	phytate degradation I
AM1_3989	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AM1_4041	PWY-282	cuticular wax biosynthesis
AM1_4041	PWY-6622	heptadecane biosynthesis
AM1_4041	PWY-7032	alkane biosynthesis I
AM1_4042	PWY-6622	heptadecane biosynthesis
AM1_4042	PWY-7032	alkane biosynthesis I
AM1_4047	PWY-5839	menaquinol-7 biosynthesis
AM1_4047	PWY-5844	menaquinol-9 biosynthesis
AM1_4047	PWY-5849	menaquinol-6 biosynthesis
AM1_4047	PWY-5890	menaquinol-10 biosynthesis
AM1_4047	PWY-5891	menaquinol-11 biosynthesis
AM1_4047	PWY-5892	menaquinol-12 biosynthesis
AM1_4047	PWY-5895	menaquinol-13 biosynthesis
AM1_4068	PWY-7851	AM1_4068
AM1_4084	PWY-101	photosynthesis light reactions
AM1_4094	PWY-5530	sorbitol biosynthesis II
AM1_4094	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AM1_4106	PWY-6829	tRNA methylation (yeast)
AM1_4106	PWY-7285	methylwyosine biosynthesis
AM1_4106	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AM1_4108	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AM1_4108	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AM1_4201	PWY-43	putrescine biosynthesis II
AM1_4234	PWY-4983	L-citrulline-nitric oxide cycle
AM1_4234	PWY-4984	urea cycle
AM1_4234	PWY-5	canavanine biosynthesis
AM1_4234	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AM1_4234	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AM1_4272	PWY-3801	sucrose degradation II (sucrose synthase)
AM1_4272	PWY-5054	sorbitol biosynthesis I
AM1_4272	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AM1_4272	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AM1_4272	PWY-5659	GDP-mannose biosynthesis
AM1_4272	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_4272	PWY-621	sucrose degradation III (sucrose invertase)
AM1_4272	PWY-622	starch biosynthesis
AM1_4272	PWY-6981	chitin biosynthesis
AM1_4272	PWY-6992	1,5-anhydrofructose degradation
AM1_4272	PWY-7238	sucrose biosynthesis II
AM1_4272	PWY-7347	sucrose biosynthesis III
AM1_4272	PWY-7385	1,3-propanediol biosynthesis (engineered)
AM1_4291	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AM1_4291	PWY-7806	AM1_4291
AM1_4352	PWY-6700	queuosine biosynthesis
AM1_4355	PWY-7921	AM1_4355
AM1_4355	PWY-7922	AM1_4355
AM1_4355	PWY-7979	AM1_4355
AM1_4357	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AM1_4357	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AM1_4361	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AM1_4361	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AM1_4365	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_4366	PWY-5194	siroheme biosynthesis
AM1_4366	PWY-5196	factor 430 biosynthesis
AM1_4366	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_4367	PWY-5686	UMP biosynthesis
AM1_4367	PWY-7790	AM1_4367
AM1_4367	PWY-7791	AM1_4367
AM1_4369	PWY-1042	glycolysis IV (plant cytosol)
AM1_4369	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_4369	PWY-6901	superpathway of glucose and xylose degradation
AM1_4369	PWY-7003	glycerol degradation to butanol
AM1_4374	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AM1_4374	PWY-6174	mevalonate pathway II (archaea)
AM1_4374	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AM1_4374	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AM1_4374	PWY-7102	bisabolene biosynthesis
AM1_4374	PWY-7391	isoprene biosynthesis II (engineered)
AM1_4374	PWY-7524	mevalonate pathway III (archaea)
AM1_4374	PWY-7560	methylerythritol phosphate pathway II
AM1_4374	PWY-922	mevalonate pathway I
AM1_4385	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AM1_4385	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
AM1_4389	PWY-1042	glycolysis IV (plant cytosol)
AM1_4389	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_4389	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_4389	PWY-7003	glycerol degradation to butanol
AM1_4413	PWY-7183	pyrimidine nucleobases salvage I
AM1_4415	PWY-4983	L-citrulline-nitric oxide cycle
AM1_4415	PWY-4984	urea cycle
AM1_4415	PWY-5	canavanine biosynthesis
AM1_4415	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AM1_4415	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AM1_4427	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_4428	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AM1_4450	PWY-101	photosynthesis light reactions
AM1_4458	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AM1_4498	PWY-2781	<i>cis</i>-zeatin biosynthesis
AM1_4512	PWY-2201	folate transformations I
AM1_4512	PWY-5497	purine nucleobases degradation II (anaerobic)
AM1_4512	PWY-7909	AM1_4512
AM1_4514	PWY-1001	cellulose biosynthesis
AM1_4560	PWY-1622	formaldehyde assimilation I (serine pathway)
AM1_4560	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AM1_4560	PWY-5913	TCA cycle VI (obligate autotrophs)
AM1_4560	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_4560	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AM1_4560	PWY-6549	L-glutamine biosynthesis III
AM1_4560	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AM1_4560	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AM1_4560	PWY-7124	ethylene biosynthesis V (engineered)
AM1_4563	PWY-6749	CMP-legionaminate biosynthesis I
AM1_4564	PWY-5278	sulfite oxidation III
AM1_4564	PWY-5340	sulfate activation for sulfonation
AM1_4564	PWY-6683	sulfate reduction III (assimilatory)
AM1_4564	PWY-6932	selenate reduction
AM1_4569	PWY-6749	CMP-legionaminate biosynthesis I
AM1_4579	PWY-1281	sulfoacetaldehyde degradation I
AM1_4579	PWY-5482	pyruvate fermentation to acetate II
AM1_4579	PWY-5485	pyruvate fermentation to acetate IV
AM1_4579	PWY-5497	purine nucleobases degradation II (anaerobic)
AM1_4579	PWY-6637	sulfolactate degradation II
AM1_4582	PWY-5194	siroheme biosynthesis
AM1_4582	PWY-5196	factor 430 biosynthesis
AM1_4582	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_4597	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AM1_4597	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AM1_4618	PWY-5316	nicotine biosynthesis
AM1_4618	PWY-5381	pyridine nucleotide cycling (plants)
AM1_4618	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AM1_4618	PWY-7342	superpathway of nicotine biosynthesis
AM1_4620	PWY-3781	aerobic respiration I (cytochrome c)
AM1_4620	PWY-4521	arsenite oxidation I (respiratory)
AM1_4620	PWY-6692	Fe(II) oxidation
AM1_4620	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AM1_4630	PWY-101	photosynthesis light reactions
AM1_4633	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AM1_4637	PWY-6700	queuosine biosynthesis
AM1_4640	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AM1_4640	PWY-622	starch biosynthesis
AM1_4640	PWY-7900	AM1_4640
AM1_4648	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_4648	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_4648	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_4648	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_4654	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AM1_4654	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AM1_4654	PWY-5194	siroheme biosynthesis
AM1_4654	PWY-5196	factor 430 biosynthesis
AM1_4654	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_4657	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AM1_4676	PWY-3341	L-proline biosynthesis III
AM1_4676	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AM1_4688	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AM1_4715	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AM1_4729	PWY-7352	daunorubicin biosynthesis
AM1_4729	PWY-7354	aclacinomycin biosynthesis
AM1_4731	PWY-5350	thiosulfate disproportionation III (rhodanese)
AM1_4731	PWY-7927	AM1_4731
AM1_4767	PWY-4261	glycerol degradation I
AM1_4767	PWY-6118	glycerol-3-phosphate shuttle
AM1_4767	PWY-6952	glycerophosphodiester degradation
AM1_4768	PWY-5667	CDP-diacylglycerol biosynthesis I
AM1_4768	PWY-5981	CDP-diacylglycerol biosynthesis III
AM1_4768	PWY-7902	AM1_4768
AM1_4769	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AM1_4803	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AM1_4803	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AM1_4814	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AM1_4814	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AM1_4845	PWY-6098	diploterol and cycloartenol biosynthesis
AM1_4845	PWY-7072	hopanoid biosynthesis (bacteria)
AM1_4852	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_4852	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_4855	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AM1_4855	PWY-2201	folate transformations I
AM1_4855	PWY-3841	folate transformations II
AM1_4855	PWY-5030	L-histidine degradation III
AM1_4855	PWY-5497	purine nucleobases degradation II (anaerobic)
AM1_4855	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AM1_4855	PWY-7909	AM1_4855
AM1_4860	PWY-702	L-methionine biosynthesis II
AM1_4868	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AM1_4889	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AM1_4889	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AM1_4889	PWY-7242	D-fructuronate degradation
AM1_4889	PWY-7310	D-glucosaminate degradation
AM1_4889	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AM1_4896	PWY-5381	pyridine nucleotide cycling (plants)
AM1_4899	PWY-5381	pyridine nucleotide cycling (plants)
AM1_4899	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AM1_4899	PWY-7761	AM1_4899
AM1_4904	PWY-7511	protein ubiquitylation
AM1_4907	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_4907	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_4913	PWY-5723	Rubisco shunt
AM1_4915	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AM1_4915	PWY-6148	tetrahydromethanopterin biosynthesis
AM1_4915	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AM1_4915	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AM1_4941	PWY-5692	allantoin degradation to glyoxylate II
AM1_4941	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AM1_4950	PWY-7560	methylerythritol phosphate pathway II
AM1_4956	PWY-1001	cellulose biosynthesis
AM1_5013	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AM1_5013	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AM1_5013	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AM1_5013	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AM1_5013	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AM1_5013	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AM1_5013	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AM1_5013	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AM1_5013	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AM1_5013	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AM1_5014	PWY-4202	arsenate detoxification I (glutaredoxin)
AM1_5014	PWY-5532	adenosine nucleotides degradation IV
AM1_5014	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AM1_5014	PWY-6608	guanosine nucleotides degradation III
AM1_5014	PWY-6609	adenine and adenosine salvage III
AM1_5014	PWY-6611	adenine and adenosine salvage V
AM1_5014	PWY-6620	guanine and guanosine salvage
AM1_5014	PWY-6627	salinosporamide A biosynthesis
AM1_5014	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AM1_5014	PWY-7179	purine deoxyribonucleosides degradation I
AM1_5014	PWY-7179-1	purine deoxyribonucleosides degradation
AM1_5026	PWY-5481	pyruvate fermentation to lactate
AM1_5026	PWY-6901	superpathway of glucose and xylose degradation
AM1_5093	PWY-7801	AM1_5093
AM1_5104	PWY-5704	urea degradation II
AM1_5106	PWY-5704	urea degradation II
AM1_5109	PWY-5704	urea degradation II
AM1_5123	PWY-6749	CMP-legionaminate biosynthesis I
AM1_5128	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AM1_5137	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AM1_5137	PWY-6269	adenosylcobalamin salvage from cobinamide II
AM1_5137	PWY-7964	AM1_5137
AM1_5137	PWY-7965	AM1_5137
AM1_5137	PWY-7966	AM1_5137
AM1_5137	PWY-7967	AM1_5137
AM1_5137	PWY-7968	AM1_5137
AM1_5137	PWY-7969	AM1_5137
AM1_5137	PWY-7970	AM1_5137
AM1_5143	PWY-5958	acridone alkaloid biosynthesis
AM1_5143	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AM1_5143	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AM1_5164	PWY-6123	inosine-5'-phosphate biosynthesis I
AM1_5164	PWY-6124	inosine-5'-phosphate biosynthesis II
AM1_5164	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AM1_5164	PWY-7234	inosine-5'-phosphate biosynthesis III
AM1_5185	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AM1_5185	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AM1_5186	PWY-6891	thiazole biosynthesis II (Bacillus)
AM1_5186	PWY-6892	thiazole biosynthesis I (E. coli)
AM1_5186	PWY-7560	methylerythritol phosphate pathway II
AM1_5193	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AM1_5193	PWY-5686	UMP biosynthesis
AM1_5193	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AM1_5193	PWY-7790	AM1_5193
AM1_5193	PWY-7791	AM1_5193
AM1_5239	PWY-6854	ethylene biosynthesis III (microbes)
AM1_5258	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AM1_5311	PWY-5917	phycocyanobilin biosynthesis
AM1_5311	PWY-7578	phycoviolobilin biosynthesis
AM1_5328	PWY-7980	AM1_5328
AM1_5330	PWY-5057	L-valine degradation II
AM1_5330	PWY-5076	L-leucine degradation III
AM1_5330	PWY-5078	L-isoleucine degradation II
AM1_5330	PWY-5101	L-isoleucine biosynthesis II
AM1_5330	PWY-5103	L-isoleucine biosynthesis III
AM1_5330	PWY-5104	L-isoleucine biosynthesis IV
AM1_5330	PWY-5108	L-isoleucine biosynthesis V
AM1_5330	PWY-7767	AM1_5330
AM1_5344	PWY-6689	tRNA splicing
AM1_5363	PWY-5958	acridone alkaloid biosynthesis
AM1_5363	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AM1_5363	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AM1_5365	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AM1_5367	PWY-3341	L-proline biosynthesis III
AM1_5367	PWY-4981	L-proline biosynthesis II (from arginine)
AM1_5367	PWY-6344	L-ornithine degradation II (Stickland reaction)
AM1_5373	PWY-6164	3-dehydroquinate biosynthesis I
AM1_5383	PWY-5532	adenosine nucleotides degradation IV
AM1_5383	PWY-5723	Rubisco shunt
AM1_5386	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AM1_5407	PWY-7352	daunorubicin biosynthesis
AM1_5407	PWY-7354	aclacinomycin biosynthesis
AM1_5413	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AM1_5413	PWY-5686	UMP biosynthesis
AM1_5413	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AM1_5413	PWY-7790	AM1_5413
AM1_5413	PWY-7791	AM1_5413
AM1_5422	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AM1_5422	PWY-6164	3-dehydroquinate biosynthesis I
AM1_5422	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AM1_5439	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AM1_5478	PWY-6655	xanthan biosynthesis
AM1_5478	PWY-6658	acetan biosynthesis
AM1_5497	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AM1_5514	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AM1_5516	PWY-6823	molybdenum cofactor biosynthesis
AM1_5521	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_5521	PWY-5723	Rubisco shunt
AM1_5521	PWY-6891	thiazole biosynthesis II (Bacillus)
AM1_5521	PWY-6892	thiazole biosynthesis I (E. coli)
AM1_5521	PWY-6901	superpathway of glucose and xylose degradation
AM1_5521	PWY-7560	methylerythritol phosphate pathway II
AM1_5551	PWY-2941	L-lysine biosynthesis II
AM1_5551	PWY-2942	L-lysine biosynthesis III
AM1_5551	PWY-5097	L-lysine biosynthesis VI
AM1_5555	PWY-5103	L-isoleucine biosynthesis III
AM1_5555	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AM1_5559	PWY-7887	AM1_5559
AM1_5559	PWY-7892	AM1_5559
AM1_5564	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_5564	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_5570	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AM1_5570	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AM1_5577	PWY-3821	galactose degradation III
AM1_5577	PWY-6317	galactose degradation I (Leloir pathway)
AM1_5577	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AM1_5577	PWY-6527	stachyose degradation
AM1_5577	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AM1_5577	PWY-7344	UDP-D-galactose biosynthesis
AM1_5599	PWY-7805	AM1_5599
AM1_5599	PWY-7807	AM1_5599
AM1_5620	PWY-4981	L-proline biosynthesis II (from arginine)
AM1_5620	PWY-4984	urea cycle
AM1_5620	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AM1_5632	PWY-5367	petroselinate biosynthesis
AM1_5632	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AM1_5632	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AM1_5632	PWY-5989	stearate biosynthesis II (bacteria and plants)
AM1_5632	PWY-5994	palmitate biosynthesis I (animals and fungi)
AM1_5632	PWY-6113	superpathway of mycolate biosynthesis
AM1_5632	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AM1_5632	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AM1_5632	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AM1_5632	PWY-7663	gondoate biosynthesis (anaerobic)
AM1_5632	PWY-7664	oleate biosynthesis IV (anaerobic)
AM1_5632	PWY-7858	AM1_5632
AM1_5632	PWYG-321	mycolate biosynthesis
AM1_5633	PWY-4381	fatty acid biosynthesis initiation I
AM1_5633	PWY-5743	3-hydroxypropanoate cycle
AM1_5633	PWY-5744	glyoxylate assimilation
AM1_5633	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AM1_5633	PWY-6722	candicidin biosynthesis
AM1_5635	PWY-5663	tetrahydrobiopterin biosynthesis I
AM1_5635	PWY-5664	tetrahydrobiopterin biosynthesis II
AM1_5635	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AM1_5635	PWY-6703	preQ<sub>0</sub> biosynthesis
AM1_5635	PWY-6983	tetrahydrobiopterin biosynthesis III
AM1_5635	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AM1_5635	PWY-7852	AM1_5635
AM1_5644	PWY-5686	UMP biosynthesis
AM1_5644	PWY-7790	AM1_5644
AM1_5644	PWY-7791	AM1_5644
AM1_5690	PWY-7255	ergothioneine biosynthesis I (bacteria)
AM1_5691	PWY-7255	ergothioneine biosynthesis I (bacteria)
AM1_5691	PWY-7550	ergothioneine biosynthesis II (fungi)
AM1_5701	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AM1_5701	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AM1_5740	PWY-6269	adenosylcobalamin salvage from cobinamide II
AM1_5740	PWY-7962	AM1_5740
AM1_5740	PWY-7971	AM1_5740
AM1_5740	PWY-7972	AM1_5740
AM1_5743	PWY-5659	GDP-mannose biosynthesis
AM1_5743	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AM1_5749	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
AM1_5749	PWY-5739	GDP-D-perosamine biosynthesis
AM1_5749	PWY-5740	GDP-L-colitose biosynthesis
AM1_5749	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AM1_5749	PWY-7573	GDP-mycosamine biosynthesis
AM1_5754	PWY-5913	TCA cycle VI (obligate autotrophs)
AM1_5754	PWY-6549	L-glutamine biosynthesis III
AM1_5754	PWY-6728	methylaspartate cycle
AM1_5754	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AM1_5754	PWY-7124	ethylene biosynthesis V (engineered)
AM1_5754	PWY-7254	TCA cycle VII (acetate-producers)
AM1_5754	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AM1_5758	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_5760	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AM1_5765	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AM1_5765	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AM1_5765	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AM1_5779	PWY-6123	inosine-5'-phosphate biosynthesis I
AM1_5779	PWY-6124	inosine-5'-phosphate biosynthesis II
AM1_5779	PWY-7234	inosine-5'-phosphate biosynthesis III
AM1_5787	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_5787	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_5787	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_5788	PWY-5386	methylglyoxal degradation I
AM1_5794	PWY-5129	sphingolipid biosynthesis (plants)
AM1_5794	PWY-7836	AM1_5794
AM1_5794	PWY-7838	AM1_5794
AM1_5794	PWY-7839	AM1_5794
AM1_5794	PWY-7841	AM1_5794
AM1_5905	PWY-5443	aminopropanol phosphate biosynthesis I
AM1_5939	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AM1_6011	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_6011	PWY-5723	Rubisco shunt
AM1_6041	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AM1_6041	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_6041	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_6041	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AM1_6041	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AM1_6041	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AM1_6045	PWY-101	photosynthesis light reactions
AM1_6048	PWY-3801	sucrose degradation II (sucrose synthase)
AM1_6052	PWY-5381	pyridine nucleotide cycling (plants)
AM1_6052	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AM1_6052	PWY-6596	adenosine nucleotides degradation I
AM1_6052	PWY-6606	guanosine nucleotides degradation II
AM1_6052	PWY-6607	guanosine nucleotides degradation I
AM1_6052	PWY-6608	guanosine nucleotides degradation III
AM1_6052	PWY-7185	UTP and CTP dephosphorylation I
AM1_6052	PWY-7821	AM1_6052
AM1_6055	PWY-4041	&gamma;-glutamyl cycle
AM1_6055	PWY-4061	glutathione-mediated detoxification I
AM1_6055	PWY-5826	hypoglycin biosynthesis
AM1_6055	PWY-6842	glutathione-mediated detoxification II
AM1_6055	PWY-7112	4-hydroxy-2-nonenal detoxification
AM1_6055	PWY-7559	glutathione degradation (DUG pathway - yeast)
AM1_6231	PWY-5386	methylglyoxal degradation I
AM1_6318	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_6318	PWY-3801	sucrose degradation II (sucrose synthase)
AM1_6318	PWY-5054	sorbitol biosynthesis I
AM1_6318	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AM1_6318	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AM1_6318	PWY-5659	GDP-mannose biosynthesis
AM1_6318	PWY-5723	Rubisco shunt
AM1_6318	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_6318	PWY-621	sucrose degradation III (sucrose invertase)
AM1_6318	PWY-622	starch biosynthesis
AM1_6318	PWY-6981	chitin biosynthesis
AM1_6318	PWY-6992	1,5-anhydrofructose degradation
AM1_6318	PWY-7238	sucrose biosynthesis II
AM1_6318	PWY-7347	sucrose biosynthesis III
AM1_6318	PWY-7385	1,3-propanediol biosynthesis (engineered)
AM1_6320	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AM1_6321	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_6344	PWY-5331	taurine biosynthesis
AM1_6351	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AM1_6351	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AM1_6351	PWY-7766	AM1_6351
AM1_6383	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_6383	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_6383	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_6383	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_6384	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_6384	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_6384	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_6384	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_6385	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_6385	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_6385	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_6385	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_6409	PWY-3461	L-tyrosine biosynthesis II
AM1_6409	PWY-3462	L-phenylalanine biosynthesis II
AM1_6409	PWY-6120	L-tyrosine biosynthesis III
AM1_6409	PWY-6627	salinosporamide A biosynthesis
AM1_6409	PWY-7626	bacilysin biosynthesis
AM1_A0090	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_A0090	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_A0090	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_A0090	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_A0125	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AM1_A0125	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AM1_A0125	PWY-6406	salicylate biosynthesis I
AM1_A0139	PWY-3781	aerobic respiration I (cytochrome c)
AM1_A0139	PWY-4521	arsenite oxidation I (respiratory)
AM1_A0139	PWY-6692	Fe(II) oxidation
AM1_A0139	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AM1_A0226	PWY-4381	fatty acid biosynthesis initiation I
AM1_A0234	PWY-6409	pyoverdine I biosynthesis
AM1_A0234	PWY-6562	norspermidine biosynthesis
AM1_A0234	PWY-761	rhizobactin 1021 biosynthesis
AM1_A0234	PWY-7855	AM1_A0234
AM1_A0234	PWY-7988	AM1_A0234
AM1_A0245	PWY-6012	acyl carrier protein metabolism I
AM1_A0245	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AM1_A0245	PWY-6289	petrobactin biosynthesis
AM1_A0247	PWY-5958	acridone alkaloid biosynthesis
AM1_A0247	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AM1_A0247	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AM1_A0248	PWY-6012	acyl carrier protein metabolism I
AM1_A0248	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AM1_A0248	PWY-6289	petrobactin biosynthesis
AM1_A0277	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AM1_A0277	PWY-5743	3-hydroxypropanoate cycle
AM1_A0277	PWY-5744	glyoxylate assimilation
AM1_A0277	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AM1_A0277	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_A0277	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AM1_A0277	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AM1_A0303	PWY-6936	seleno-amino acid biosynthesis
AM1_B0037	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AM1_B0037	PWY-5743	3-hydroxypropanoate cycle
AM1_B0037	PWY-5744	glyoxylate assimilation
AM1_B0037	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AM1_B0037	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_B0037	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AM1_B0037	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AM1_B0119	PWY-7142	cyanide detoxification II
AM1_B0132	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AM1_B0132	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AM1_B0161	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AM1_B0161	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AM1_B0161	PWY-6936	seleno-amino acid biosynthesis
AM1_B0161	PWY-702	L-methionine biosynthesis II
AM1_B0173	PWY-5663	tetrahydrobiopterin biosynthesis I
AM1_B0173	PWY-5664	tetrahydrobiopterin biosynthesis II
AM1_B0173	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AM1_B0173	PWY-6703	preQ<sub>0</sub> biosynthesis
AM1_B0173	PWY-6983	tetrahydrobiopterin biosynthesis III
AM1_B0173	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AM1_B0173	PWY-7852	AM1_B0173
AM1_B0177	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_B0177	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_B0179	PWY-5686	UMP biosynthesis
AM1_B0179	PWY-7790	AM1_B0179
AM1_B0179	PWY-7791	AM1_B0179
AM1_B0411	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AM1_B0411	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AM1_B0411	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AM1_B0411	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AM1_C0053	PWY-7352	daunorubicin biosynthesis
AM1_C0053	PWY-7354	aclacinomycin biosynthesis
AM1_C0108	PWY-5874	heme degradation
AM1_C0178	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AM1_C0178	PWY-6853	ethylene biosynthesis II (microbes)
AM1_C0178	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AM1_C0185	PWY-5917	phycocyanobilin biosynthesis
AM1_C0185	PWY-7578	phycoviolobilin biosynthesis
AM1_C0205	PWY-5874	heme degradation
AM1_C0293	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AM1_C0293	PWY-2201	folate transformations I
AM1_C0293	PWY-3841	folate transformations II
AM1_C0293	PWY-5030	L-histidine degradation III
AM1_C0293	PWY-5497	purine nucleobases degradation II (anaerobic)
AM1_C0293	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AM1_C0293	PWY-7909	AM1_C0293
AM1_D0143	PWY-1042	glycolysis IV (plant cytosol)
AM1_D0143	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AM1_D0143	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_D0143	PWY-7385	1,3-propanediol biosynthesis (engineered)
AM1_D0148	PWY-3162	L-tryptophan degradation V (side chain pathway)
AM1_D0148	PWY-5057	L-valine degradation II
AM1_D0148	PWY-5076	L-leucine degradation III
AM1_D0148	PWY-5078	L-isoleucine degradation II
AM1_D0148	PWY-5079	L-phenylalanine degradation III
AM1_D0148	PWY-5082	L-methionine degradation III
AM1_D0148	PWY-5480	pyruvate fermentation to ethanol I
AM1_D0148	PWY-5486	pyruvate fermentation to ethanol II
AM1_D0148	PWY-5751	phenylethanol biosynthesis
AM1_D0148	PWY-6313	serotonin degradation
AM1_D0148	PWY-6333	acetaldehyde biosynthesis I
AM1_D0148	PWY-6342	noradrenaline and adrenaline degradation
AM1_D0148	PWY-6587	pyruvate fermentation to ethanol III
AM1_D0148	PWY-6802	salidroside biosynthesis
AM1_D0148	PWY-6871	3-methylbutanol biosynthesis
AM1_D0148	PWY-7013	L-1,2-propanediol degradation
AM1_D0148	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AM1_D0148	PWY-7118	chitin degradation to ethanol
AM1_D0148	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AM1_D0156	PWY-5484	glycolysis II (from fructose 6-phosphate)
AM1_D0156	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AM1_D0157	PWY-7980	AM1_D0157
AM1_D0165	PWY-7980	AM1_D0165
AM1_D0182	PWY-5382	hydrogen oxidation II (aerobic, NAD)
AM1_D0182	PWY-6758	hydrogen production II
AM1_D0200	PWY-5941	glycogen degradation II (eukaryotic)
AM1_D0200	PWY-6731	starch degradation III
AM1_D0200	PWY-6737	starch degradation V
AM1_D0200	PWY-7238	sucrose biosynthesis II
AM1_D0255	PWY-5350	thiosulfate disproportionation III (rhodanese)
AM1_D0255	PWY-7927	AM1_D0255
AM1_E0115	PWY-6483	ceramide degradation
AM1_E0115	PWY-7119	sphingolipid recycling and degradation (yeast)
AM1_F0042	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AM1_F0042	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AM1_F0042	PWY-6936	seleno-amino acid biosynthesis
AM1_F0042	PWY-702	L-methionine biosynthesis II
AM1_F0047	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AM1_F0047	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_F0047	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AM1_F0047	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AM1_F0047	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_F0047	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_F0047	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_F0047	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AM1_F0048	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AM1_F0048	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_F0048	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AM1_F0048	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AM1_F0048	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_F0048	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AM1_F0048	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AM1_F0048	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis