AM1_0009 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_0016 SM00052 Putative diguanylate phosphodiesterase AM1_0016 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_0016 SM00091 PAS domain AM1_0016 SM00267 diguanylate cyclase AM1_0016 SM00448 cheY-homologous receiver domain AM1_0017 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_0017 SM00387 Histidine kinase-like ATPases AM1_0017 SM00388 His Kinase A (phosphoacceptor) domain AM1_0018 SM00448 cheY-homologous receiver domain AM1_0020 SM00670 Large family of predicted nucleotide-binding domains AM1_0022 SM00320 WD40 repeats AM1_0023 SM00028 Tetratricopeptide repeats AM1_0029 SM00421 helix_turn_helix, Lux Regulon AM1_0036 SM00732 Likely ribonuclease with RNase H fold. AM1_0043 SM00567 E-Z type HEAT repeats AM1_0048 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_0052 SM00287 Bacterial SH3 domain homologues AM1_0055 SM00364 Leucine-rich repeats, bacterial type AM1_0055 SM00369 Leucine-rich repeats, typical (most populated) subfamily AM1_0067 SM00838 Elongation factor G C-terminus AM1_0068 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_0068 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_0068 SM00091 PAS domain AM1_0068 SM00387 Histidine kinase-like ATPases AM1_0068 SM00388 His Kinase A (phosphoacceptor) domain AM1_0068 SM00448 cheY-homologous receiver domain AM1_0069 SM00267 diguanylate cyclase AM1_0069 SM00448 cheY-homologous receiver domain AM1_0075 SM00912 haemagglutination activity domain AM1_0082 SM00028 Tetratricopeptide repeats AM1_0091 SM01057 Eukaryotic-type carbonic anhydrase AM1_0104 SM00028 Tetratricopeptide repeats AM1_0106 SM00710 Parallel beta-helix repeats AM1_0131 SM00487 DEAD-like helicases superfamily AM1_0131 SM00490 helicase superfamily c-terminal domain AM1_0137 SM00382 ATPases associated with a variety of cellular activities AM1_0142 SM00642 Alpha-amylase domain AM1_0165 SM00320 WD40 repeats AM1_0172 SM00320 WD40 repeats AM1_0174 SM00382 ATPases associated with a variety of cellular activities AM1_0179 SM00880 AM1_0179 AM1_0180 SM01321 AM1_0180 AM1_0181 SM00271 DnaJ molecular chaperone homology domain AM1_0193 SM00267 diguanylate cyclase AM1_0197 SM00387 Histidine kinase-like ATPases AM1_0197 SM00388 His Kinase A (phosphoacceptor) domain AM1_0197 SM00448 cheY-homologous receiver domain AM1_0210 SM00822 AM1_0210 AM1_0211 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_0218 SM00052 Putative diguanylate phosphodiesterase AM1_0220 SM00387 Histidine kinase-like ATPases AM1_0220 SM00388 His Kinase A (phosphoacceptor) domain AM1_0220 SM00448 cheY-homologous receiver domain AM1_0224 SM00091 PAS domain AM1_0224 SM00240 Forkhead associated domain AM1_0224 SM00387 Histidine kinase-like ATPases AM1_0224 SM00388 His Kinase A (phosphoacceptor) domain AM1_0227 SM00240 Forkhead associated domain AM1_0239 SM00382 ATPases associated with a variety of cellular activities AM1_0257 SM00028 Tetratricopeptide repeats AM1_0263 SM00382 ATPases associated with a variety of cellular activities AM1_0267 SM00421 helix_turn_helix, Lux Regulon AM1_0267 SM00448 cheY-homologous receiver domain AM1_0268 SM00387 Histidine kinase-like ATPases AM1_0268 SM00388 His Kinase A (phosphoacceptor) domain AM1_0277 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_0284 SM00487 DEAD-like helicases superfamily AM1_0284 SM00490 helicase superfamily c-terminal domain AM1_0285 SM00387 Histidine kinase-like ATPases AM1_0285 SM00388 His Kinase A (phosphoacceptor) domain AM1_0285 SM00448 cheY-homologous receiver domain AM1_0286 SM00448 cheY-homologous receiver domain AM1_0287 SM00387 Histidine kinase-like ATPases AM1_0287 SM00388 His Kinase A (phosphoacceptor) domain AM1_0288 SM00507 HNH nucleases AM1_0319 SM00506 Appr-1"-p processing enzyme AM1_0336 SM01230 AM1_0336 AM1_0386 SM00382 ATPases associated with a variety of cellular activities AM1_0394 SM00448 cheY-homologous receiver domain AM1_0395 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_0395 SM00091 PAS domain AM1_0395 SM00387 Histidine kinase-like ATPases AM1_0395 SM00388 His Kinase A (phosphoacceptor) domain AM1_0402 SM00382 ATPases associated with a variety of cellular activities AM1_0402 SM01086 C-terminal, D2-small domain, of ClpB protein AM1_0411 SM00477 DNA/RNA non-specific endonuclease AM1_0411 SM00892 DNA/RNA non-specific endonuclease AM1_0416 SM00271 DnaJ molecular chaperone homology domain AM1_0418 SM00382 ATPases associated with a variety of cellular activities AM1_0423 SM00271 DnaJ molecular chaperone homology domain AM1_0437 SM00881 CoA binding domain AM1_0449 SM00450 Rhodanese Homology Domain AM1_0461 SM00248 ankyrin repeats AM1_0463 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_0467 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_0469 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_0469 SM00091 PAS domain AM1_0469 SM00387 Histidine kinase-like ATPases AM1_0469 SM00388 His Kinase A (phosphoacceptor) domain AM1_0469 SM00448 cheY-homologous receiver domain AM1_0474 SM00899 AM1_0474 AM1_0480 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_0480 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_0498 SM00382 ATPases associated with a variety of cellular activities AM1_0513 SM00232 JAB/MPN domain AM1_0514 SM00450 Rhodanese Homology Domain AM1_0515 SM00421 helix_turn_helix, Lux Regulon AM1_0515 SM00448 cheY-homologous receiver domain AM1_0516 SM00387 Histidine kinase-like ATPases AM1_0522 SM00052 Putative diguanylate phosphodiesterase AM1_0522 SM00267 diguanylate cyclase AM1_0522 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_0533 SM00327 von Willebrand factor (vWF) type A domain AM1_0533 SM00382 ATPases associated with a variety of cellular activities AM1_0547 SM00267 diguanylate cyclase AM1_0547 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_0548 SM00052 Putative diguanylate phosphodiesterase AM1_0548 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_0548 SM00267 diguanylate cyclase AM1_0550 SM00155 Phospholipase D. Active site motifs. AM1_0550 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM1_0564 SM00267 diguanylate cyclase AM1_0564 SM00448 cheY-homologous receiver domain AM1_0568 SM00360 RNA recognition motif AM1_0574 SM01266 AM1_0574 AM1_0582 SM00052 Putative diguanylate phosphodiesterase AM1_0582 SM00091 PAS domain AM1_0582 SM00240 Forkhead associated domain AM1_0582 SM00267 diguanylate cyclase AM1_0594 SM00226 Low molecular weight phosphatase family AM1_0596 SM00422 helix_turn_helix, mercury resistance AM1_0600 SM00028 Tetratricopeptide repeats AM1_0601 SM00838 Elongation factor G C-terminus AM1_0601 SM00889 Elongation factor G, domain IV AM1_0607 SM00028 Tetratricopeptide repeats AM1_0609 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM1_0622 SM00642 Alpha-amylase domain AM1_0635 SM00387 Histidine kinase-like ATPases AM1_0635 SM00388 His Kinase A (phosphoacceptor) domain AM1_0635 SM00448 cheY-homologous receiver domain AM1_0648 SM00382 ATPases associated with a variety of cellular activities AM1_0649 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AM1_0649 SM01232 AM1_0649 AM1_0655 SM00877 AM1_0655 AM1_0656 SM00877 AM1_0656 AM1_0658 SM00382 ATPases associated with a variety of cellular activities AM1_0664 SM00487 DEAD-like helicases superfamily AM1_0664 SM00490 helicase superfamily c-terminal domain AM1_0667 SM00028 Tetratricopeptide repeats AM1_0667 SM00271 DnaJ molecular chaperone homology domain AM1_0668 SM00028 Tetratricopeptide repeats AM1_0672 SM00487 DEAD-like helicases superfamily AM1_0696 SM00861 Transketolase, pyrimidine binding domain AM1_0702 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AM1_0702 SM01080 AM1_0702 AM1_0705 SM00917 LeuA allosteric (dimerisation) domain AM1_0713 SM00155 Phospholipase D. Active site motifs. AM1_0714 SM00052 Putative diguanylate phosphodiesterase AM1_0714 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_0716 SM00320 WD40 repeats AM1_0725 SM00823 Phosphopantetheine attachment site AM1_0725 SM01294 AM1_0725 AM1_0727 SM00855 Phosphoglycerate mutase family AM1_0728 SM00822 AM1_0728 AM1_0746 SM01234 AM1_0746 AM1_0749 SM00244 prohibitin homologues AM1_0750 SM00244 prohibitin homologues AM1_0772 SM00382 ATPases associated with a variety of cellular activities AM1_0794 SM00448 cheY-homologous receiver domain AM1_0794 SM00862 Transcriptional regulatory protein, C terminal AM1_0806 SM00864 Tubulin/FtsZ family, GTPase domain AM1_0806 SM00865 Tubulin/FtsZ family, C-terminal domain AM1_0807 SM01400 AM1_0807 AM1_0809 SM00382 ATPases associated with a variety of cellular activities AM1_0810 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_0825 SM00271 DnaJ molecular chaperone homology domain AM1_0828 SM00448 cheY-homologous receiver domain AM1_0829 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_0829 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_0829 SM00091 PAS domain AM1_0829 SM00387 Histidine kinase-like ATPases AM1_0829 SM00388 His Kinase A (phosphoacceptor) domain AM1_0832 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AM1_0839 SM00930 AM1_0839 AM1_0857 SM01001 AIR carboxylase AM1_0858 SM01005 Alanine racemase, C-terminal domain AM1_0860 SM00382 ATPases associated with a variety of cellular activities AM1_0861 SM00382 ATPases associated with a variety of cellular activities AM1_0875 SM00988 UreE urease accessory protein, N-terminal domain AM1_0888 SM00857 Resolvase, N terminal domain AM1_0898 SM01329 AM1_0898 AM1_0908 SM00448 cheY-homologous receiver domain AM1_0909 SM00448 cheY-homologous receiver domain AM1_0910 SM00260 Two component signalling adaptor domain AM1_0912 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM1_0912 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_0913 SM00073 Histidine Phosphotransfer domain AM1_0913 SM00260 Two component signalling adaptor domain AM1_0913 SM00387 Histidine kinase-like ATPases AM1_0913 SM00448 cheY-homologous receiver domain AM1_0913 SM01231 AM1_0913 AM1_0914 SM00260 Two component signalling adaptor domain AM1_0931 SM00322 K homology RNA-binding domain AM1_0940 SM00845 GatB domain AM1_0946 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_0949 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM1_0951 SM00831 Cation transporter/ATPase, N-terminus AM1_0952 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_0959 SM00387 Histidine kinase-like ATPases AM1_0959 SM00388 His Kinase A (phosphoacceptor) domain AM1_0971 SM00028 Tetratricopeptide repeats AM1_0974 SM00382 ATPases associated with a variety of cellular activities AM1_0986 SM00382 ATPases associated with a variety of cellular activities AM1_0991 SM00028 Tetratricopeptide repeats AM1_0993 SM01248 AM1_0993 AM1_0994 SM01247 AM1_0994 AM1_0996 SM00642 Alpha-amylase domain AM1_1013 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_1016 SM00382 ATPases associated with a variety of cellular activities AM1_1043 SM00966 SpoVT / AbrB like domain AM1_1055 SM00320 WD40 repeats AM1_1056 SM00267 diguanylate cyclase AM1_1075 SM00450 Rhodanese Homology Domain AM1_1078 SM00825 Beta-ketoacyl synthase AM1_1086 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1087 SM00957 SecA DEAD-like domain AM1_1087 SM00958 SecA preprotein cross-linking domain AM1_1091 SM00912 haemagglutination activity domain AM1_1098 SM00448 cheY-homologous receiver domain AM1_1101 SM00387 Histidine kinase-like ATPases AM1_1101 SM00448 cheY-homologous receiver domain AM1_1104 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM1_1106 SM00448 cheY-homologous receiver domain AM1_1107 SM00448 cheY-homologous receiver domain AM1_1111 SM00271 DnaJ molecular chaperone homology domain AM1_1116 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM1_1116 SM00465 GIY-YIG type nucleases (URI domain) AM1_1134 SM00028 Tetratricopeptide repeats AM1_1138 SM00855 Phosphoglycerate mutase family AM1_1143 SM00450 Rhodanese Homology Domain AM1_1154 SM00411 bacterial (prokaryotic) histone like domain AM1_1157 SM00331 Sigma factor PP2C-like phosphatases AM1_1157 SM00448 cheY-homologous receiver domain AM1_1164 SM00487 DEAD-like helicases superfamily AM1_1164 SM00490 helicase superfamily c-terminal domain AM1_1185 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1185 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_1185 SM00091 PAS domain AM1_1185 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_1185 SM00387 Histidine kinase-like ATPases AM1_1185 SM00388 His Kinase A (phosphoacceptor) domain AM1_1185 SM00448 cheY-homologous receiver domain AM1_1186 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1186 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_1186 SM00091 PAS domain AM1_1186 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_1186 SM00387 Histidine kinase-like ATPases AM1_1186 SM00388 His Kinase A (phosphoacceptor) domain AM1_1186 SM00448 cheY-homologous receiver domain AM1_1187 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM1_1187 SM00292 breast cancer carboxy-terminal domain AM1_1187 SM00532 Ligase N family AM1_1196 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_1205 SM00320 WD40 repeats AM1_1214 SM00287 Bacterial SH3 domain homologues AM1_1223 SM00382 ATPases associated with a variety of cellular activities AM1_1226 SM00420 helix_turn_helix, Deoxyribose operon repressor AM1_1237 SM00028 Tetratricopeptide repeats AM1_1239 SM00191 Integrin alpha (beta-propellor repeats). AM1_1239 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AM1_1247 SM00937 AM1_1247 AM1_1253 SM00662 RNA polymerases D AM1_1256 SM01018 B12 binding domain AM1_1262 SM00052 Putative diguanylate phosphodiesterase AM1_1262 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_1262 SM00091 PAS domain AM1_1262 SM00267 diguanylate cyclase AM1_1283 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_1284 SM00670 Large family of predicted nucleotide-binding domains AM1_1308 SM00382 ATPases associated with a variety of cellular activities AM1_1309 SM00046 Diacylglycerol kinase catalytic domain (presumed) AM1_1309 SM00851 MGS-like domain AM1_1317 SM00342 helix_turn_helix, arabinose operon control protein AM1_1360 SM00382 ATPases associated with a variety of cellular activities AM1_1362 SM00382 ATPases associated with a variety of cellular activities AM1_1364 SM00382 ATPases associated with a variety of cellular activities AM1_1377 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_1378 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1379 SM00448 cheY-homologous receiver domain AM1_1382 SM00852 Probable molybdopterin binding domain AM1_1384 SM00849 Metallo-beta-lactamase superfamily AM1_1384 SM00903 Flavin reductase like domain AM1_1386 SM00849 Metallo-beta-lactamase superfamily AM1_1386 SM00903 Flavin reductase like domain AM1_1392 SM00364 Leucine-rich repeats, bacterial type AM1_1392 SM00365 Leucine-rich repeat, SDS22-like subfamily AM1_1392 SM00369 Leucine-rich repeats, typical (most populated) subfamily AM1_1400 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_1401 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AM1_1401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_1406 SM00028 Tetratricopeptide repeats AM1_1412 SM00460 Transglutaminase/protease-like homologues AM1_1416 SM00052 Putative diguanylate phosphodiesterase AM1_1416 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_1416 SM00091 PAS domain AM1_1416 SM00267 diguanylate cyclase AM1_1425 SM00320 WD40 repeats AM1_1434 SM01211 AM1_1434 AM1_1453 SM00316 Ribosomal protein S1-like RNA-binding domain AM1_1454 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AM1_1463 SM00318 Staphylococcal nuclease homologues AM1_1468 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_1468 SM00387 Histidine kinase-like ATPases AM1_1468 SM00388 His Kinase A (phosphoacceptor) domain AM1_1469 SM00421 helix_turn_helix, Lux Regulon AM1_1469 SM00448 cheY-homologous receiver domain AM1_1478 SM00382 ATPases associated with a variety of cellular activities AM1_1480 SM00448 cheY-homologous receiver domain AM1_1480 SM00862 Transcriptional regulatory protein, C terminal AM1_1481 SM00387 Histidine kinase-like ATPases AM1_1481 SM00388 His Kinase A (phosphoacceptor) domain AM1_1493 SM00967 RNA 2'-O ribose methyltransferase substrate binding AM1_1497 SM01230 AM1_1497 AM1_1499 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1499 SM00387 Histidine kinase-like ATPases AM1_1499 SM00388 His Kinase A (phosphoacceptor) domain AM1_1499 SM00448 cheY-homologous receiver domain AM1_1500 SM00091 PAS domain AM1_1500 SM00387 Histidine kinase-like ATPases AM1_1500 SM00388 His Kinase A (phosphoacceptor) domain AM1_1500 SM00448 cheY-homologous receiver domain AM1_1501 SM00448 cheY-homologous receiver domain AM1_1501 SM00862 Transcriptional regulatory protein, C terminal AM1_1504 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_1504 SM00924 MgtE intracellular N domain AM1_1508 SM00257 Lysin motif AM1_1526 SM00829 Enoylreductase AM1_1540 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM1_1553 SM00062 Bacterial periplasmic substrate-binding proteins AM1_1557 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1557 SM00387 Histidine kinase-like ATPases AM1_1557 SM00388 His Kinase A (phosphoacceptor) domain AM1_1557 SM00448 cheY-homologous receiver domain AM1_1562 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AM1_1563 SM00422 helix_turn_helix, mercury resistance AM1_1566 SM00421 helix_turn_helix, Lux Regulon AM1_1566 SM00448 cheY-homologous receiver domain AM1_1571 SM00028 Tetratricopeptide repeats AM1_1573 SM00450 Rhodanese Homology Domain AM1_1578 SM00028 Tetratricopeptide repeats AM1_1578 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_1580 SM00248 ankyrin repeats AM1_1584 SM00028 Tetratricopeptide repeats AM1_1584 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_1599 SM00382 ATPases associated with a variety of cellular activities AM1_1601 SM00382 ATPases associated with a variety of cellular activities AM1_1618 SM00829 Enoylreductase AM1_1629 SM00267 diguanylate cyclase AM1_1639 SM00267 diguanylate cyclase AM1_1639 SM00448 cheY-homologous receiver domain AM1_1641 SM00235 Zinc-dependent metalloprotease AM1_1648 SM00448 cheY-homologous receiver domain AM1_1649 SM00460 Transglutaminase/protease-like homologues AM1_1653 SM00382 ATPases associated with a variety of cellular activities AM1_1653 SM00393 Putative single-stranded nucleic acids-binding domain AM1_1654 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1654 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_1654 SM00387 Histidine kinase-like ATPases AM1_1654 SM00388 His Kinase A (phosphoacceptor) domain AM1_1676 SM00474 3'-5' exonuclease AM1_1689 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AM1_1692 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_1694 SM00046 Diacylglycerol kinase catalytic domain (presumed) AM1_1698 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_1701 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_1702 SM00487 DEAD-like helicases superfamily AM1_1702 SM00490 helicase superfamily c-terminal domain AM1_1705 SM00316 Ribosomal protein S1-like RNA-binding domain AM1_1707 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM1_1709 SM00327 von Willebrand factor (vWF) type A domain AM1_1711 SM00028 Tetratricopeptide repeats AM1_1717 SM00358 Double-stranded RNA binding motif AM1_1717 SM00535 Ribonuclease III family AM1_1719 SM00028 Tetratricopeptide repeats AM1_1719 SM00271 DnaJ molecular chaperone homology domain AM1_1721 SM00448 cheY-homologous receiver domain AM1_1721 SM00862 Transcriptional regulatory protein, C terminal AM1_1725 SM00052 Putative diguanylate phosphodiesterase AM1_1725 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_1725 SM00091 PAS domain AM1_1725 SM00267 diguanylate cyclase AM1_1725 SM00448 cheY-homologous receiver domain AM1_1726 SM00448 cheY-homologous receiver domain AM1_1727 SM00387 Histidine kinase-like ATPases AM1_1727 SM00388 His Kinase A (phosphoacceptor) domain AM1_1733 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_1733 SM00876 Biotin and Thiamin Synthesis associated domain AM1_1735 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1735 SM00387 Histidine kinase-like ATPases AM1_1735 SM00388 His Kinase A (phosphoacceptor) domain AM1_1743 SM00382 ATPases associated with a variety of cellular activities AM1_1744 SM00240 Forkhead associated domain AM1_1753 SM00650 Ribosomal RNA adenine dimethylases AM1_1759 SM00382 ATPases associated with a variety of cellular activities AM1_1772 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM1_1781 SM00961 Ribulose bisphosphate carboxylase, small chain AM1_1783 SM00961 Ribulose bisphosphate carboxylase, small chain AM1_1787 SM00028 Tetratricopeptide repeats AM1_1792 SM00464 Found in ATP-dependent protease La (LON) AM1_1793 SM01403 AM1_1793 AM1_1795 SM00838 Elongation factor G C-terminus AM1_1795 SM00889 Elongation factor G, domain IV AM1_1805 SM00073 Histidine Phosphotransfer domain AM1_1808 SM00421 helix_turn_helix, Lux Regulon AM1_1808 SM00448 cheY-homologous receiver domain AM1_1819 SM00382 ATPases associated with a variety of cellular activities AM1_1838 SM00240 Forkhead associated domain AM1_1841 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1841 SM00267 diguanylate cyclase AM1_1849 SM00382 ATPases associated with a variety of cellular activities AM1_1854 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_1855 SM00822 AM1_1855 AM1_1860 SM01234 AM1_1860 AM1_1867 SM01240 AM1_1867 AM1_1870 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_1870 SM00387 Histidine kinase-like ATPases AM1_1870 SM00388 His Kinase A (phosphoacceptor) domain AM1_1870 SM00448 cheY-homologous receiver domain AM1_1881 SM00450 Rhodanese Homology Domain AM1_1886 SM00382 ATPases associated with a variety of cellular activities AM1_1887 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AM1_1887 SM01225 AM1_1887 AM1_1912 SM00382 ATPases associated with a variety of cellular activities AM1_1919 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AM1_1931 SM00563 Phosphate acyltransferases AM1_1934 SM00052 Putative diguanylate phosphodiesterase AM1_1941 SM00852 Probable molybdopterin binding domain AM1_1944 SM00382 ATPases associated with a variety of cellular activities AM1_1945 SM00028 Tetratricopeptide repeats AM1_1947 SM00382 ATPases associated with a variety of cellular activities AM1_1947 SM01086 C-terminal, D2-small domain, of ClpB protein AM1_1960 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_1960 SM00448 cheY-homologous receiver domain AM1_1963 SM00091 PAS domain AM1_1963 SM00387 Histidine kinase-like ATPases AM1_1963 SM00388 His Kinase A (phosphoacceptor) domain AM1_1963 SM00448 cheY-homologous receiver domain AM1_1966 SM00387 Histidine kinase-like ATPases AM1_1973 SM00255 Toll - interleukin 1 - resistance AM1_1973 SM00364 Leucine-rich repeats, bacterial type AM1_1973 SM00365 Leucine-rich repeat, SDS22-like subfamily AM1_1973 SM00369 Leucine-rich repeats, typical (most populated) subfamily AM1_1993 SM00506 Appr-1"-p processing enzyme AM1_2023 SM00360 RNA recognition motif AM1_2038 SM00364 Leucine-rich repeats, bacterial type AM1_2038 SM00365 Leucine-rich repeat, SDS22-like subfamily AM1_2038 SM00369 Leucine-rich repeats, typical (most populated) subfamily AM1_2041 SM00327 von Willebrand factor (vWF) type A domain AM1_2043 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM1_2043 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM1_2043 SM00493 AM1_2043 AM1_2056 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_2063 SM00671 Sel1-like repeats. AM1_2073 SM00342 helix_turn_helix, arabinose operon control protein AM1_2083 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_2083 SM00245 tail specific protease AM1_2089 SM00052 Putative diguanylate phosphodiesterase AM1_2091 SM01350 AM1_2091 AM1_2122 SM00878 Biotin carboxylase C-terminal domain AM1_2125 SM00382 ATPases associated with a variety of cellular activities AM1_2125 SM01086 C-terminal, D2-small domain, of ClpB protein AM1_2130 SM00382 ATPases associated with a variety of cellular activities AM1_2136 SM00646 AM1_2136 AM1_2151 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AM1_2151 SM00474 3'-5' exonuclease AM1_2151 SM00475 5'-3' exonuclease AM1_2151 SM00482 DNA polymerase A domain AM1_2156 SM00855 Phosphoglycerate mutase family AM1_2164 SM00173 Ras subfamily of RAS small GTPases AM1_2164 SM00174 Rho (Ras homology) subfamily of Ras-like small GTPases AM1_2164 SM00175 Rab subfamily of small GTPases AM1_2164 SM00320 WD40 repeats AM1_2172 SM01209 AM1_2172 AM1_2172 SM01210 AM1_2172 AM1_2177 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_2178 SM00240 Forkhead associated domain AM1_2178 SM00382 ATPases associated with a variety of cellular activities AM1_2179 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_2181 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_2182 SM01228 AM1_2182 AM1_2193 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_2201 SM00382 ATPases associated with a variety of cellular activities AM1_2217 SM00421 helix_turn_helix, Lux Regulon AM1_2217 SM00448 cheY-homologous receiver domain AM1_2229 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_2237 SM00487 DEAD-like helicases superfamily AM1_2240 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_2240 SM00421 helix_turn_helix, Lux Regulon AM1_2292 SM00382 ATPases associated with a variety of cellular activities AM1_2293 SM00642 Alpha-amylase domain AM1_2294 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_2299 SM00382 ATPases associated with a variety of cellular activities AM1_2305 SM00052 Putative diguanylate phosphodiesterase AM1_2305 SM00267 diguanylate cyclase AM1_2305 SM00448 cheY-homologous receiver domain AM1_2318 SM00382 ATPases associated with a variety of cellular activities AM1_2319 SM00567 E-Z type HEAT repeats AM1_2322 SM00909 Sporulation and spore germination AM1_2333 SM00830 Chorismate mutase type II AM1_2335 SM00382 ATPases associated with a variety of cellular activities AM1_2337 SM00363 S4 RNA-binding domain AM1_2338 SM00481 DNA polymerase alpha chain like domain AM1_2366 SM00984 UDP binding domain AM1_2370 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. AM1_2373 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_2374 SM00331 Sigma factor PP2C-like phosphatases AM1_2374 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AM1_2387 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_2387 SM00240 Forkhead associated domain AM1_2387 SM00387 Histidine kinase-like ATPases AM1_2387 SM00388 His Kinase A (phosphoacceptor) domain AM1_2389 SM00347 helix_turn_helix multiple antibiotic resistance protein AM1_2401 SM00479 AM1_2401 AM1_2413 SM00861 Transketolase, pyrimidine binding domain AM1_2416 SM00028 Tetratricopeptide repeats AM1_2424 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AM1_2426 SM00028 Tetratricopeptide repeats AM1_2436 SM00382 ATPases associated with a variety of cellular activities AM1_2438 SM00507 HNH nucleases AM1_2452 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AM1_2461 SM00487 DEAD-like helicases superfamily AM1_2461 SM00490 helicase superfamily c-terminal domain AM1_2463 SM00829 Enoylreductase AM1_2464 SM00240 Forkhead associated domain AM1_2464 SM00382 ATPases associated with a variety of cellular activities AM1_2471 SM00028 Tetratricopeptide repeats AM1_2487 SM01093 AM1_2487 AM1_2489 SM01093 AM1_2489 AM1_2501 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AM1_2501 SM01232 AM1_2501 AM1_2504 SM00387 Histidine kinase-like ATPases AM1_2504 SM00388 His Kinase A (phosphoacceptor) domain AM1_2504 SM01248 AM1_2504 AM1_2505 SM00320 WD40 repeats AM1_2506 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_2510 SM00912 haemagglutination activity domain AM1_2512 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AM1_2512 SM00481 DNA polymerase alpha chain like domain AM1_2514 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM1_2514 SM00954 Region found in RelA / SpoT proteins AM1_2515 SM00327 von Willebrand factor (vWF) type A domain AM1_2517 SM00320 WD40 repeats AM1_2518 SM00646 AM1_2518 AM1_2535 SM00382 ATPases associated with a variety of cellular activities AM1_2552 SM00248 ankyrin repeats AM1_2556 SM00240 Forkhead associated domain AM1_2560 SM00240 Forkhead associated domain AM1_2562 SM00400 zinc finger AM1_2562 SM00493 AM1_2562 AM1_2573 SM00382 ATPases associated with a variety of cellular activities AM1_2576 SM00530 Helix-turn-helix XRE-family like proteins AM1_2578 SM00028 Tetratricopeptide repeats AM1_2586 SM00028 Tetratricopeptide repeats AM1_2616 SM00360 RNA recognition motif AM1_2619 SM00644 AM1_2619 AM1_2638 SM00240 Forkhead associated domain AM1_2639 SM00240 Forkhead associated domain AM1_2643 SM00028 Tetratricopeptide repeats AM1_2644 SM00838 Elongation factor G C-terminus AM1_2644 SM00889 Elongation factor G, domain IV AM1_2646 SM00248 ankyrin repeats AM1_2651 SM00849 Metallo-beta-lactamase superfamily AM1_2652 SM00904 Riboflavin kinase AM1_2653 SM00382 ATPases associated with a variety of cellular activities AM1_2661 SM00450 Rhodanese Homology Domain AM1_2682 SM00052 Putative diguanylate phosphodiesterase AM1_2687 SM00240 Forkhead associated domain AM1_2721 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_2723 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_2739 SM00028 Tetratricopeptide repeats AM1_2759 SM00028 Tetratricopeptide repeats AM1_2759 SM00255 Toll - interleukin 1 - resistance AM1_2763 SM00028 Tetratricopeptide repeats AM1_2792 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_2797 SM00448 cheY-homologous receiver domain AM1_2798 SM01118 AM1_2798 AM1_2799 SM00244 prohibitin homologues AM1_2800 SM00387 Histidine kinase-like ATPases AM1_2800 SM00388 His Kinase A (phosphoacceptor) domain AM1_2805 SM00968 SMC proteins Flexible Hinge Domain AM1_2821 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_2827 SM00028 Tetratricopeptide repeats AM1_2838 SM00382 ATPases associated with a variety of cellular activities AM1_2841 SM00028 Tetratricopeptide repeats AM1_2841 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_2845 SM00028 Tetratricopeptide repeats AM1_2858 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AM1_2860 SM00052 Putative diguanylate phosphodiesterase AM1_2860 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_2860 SM00240 Forkhead associated domain AM1_2860 SM00267 diguanylate cyclase AM1_2864 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AM1_2864 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM1_2865 SM00649 Ribosomal protein L11/L12 AM1_2872 SM00240 Forkhead associated domain AM1_2872 SM00382 ATPases associated with a variety of cellular activities AM1_2883 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM1_2886 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_2921 SM01091 Transporter associated domain AM1_2926 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AM1_2926 SM01080 AM1_2926 AM1_2935 SM00756 AM1_2935 AM1_2939 SM00267 diguanylate cyclase AM1_2944 SM00320 WD40 repeats AM1_2955 SM00028 Tetratricopeptide repeats AM1_2959 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_2970 SM00382 ATPases associated with a variety of cellular activities AM1_2983 SM00567 E-Z type HEAT repeats AM1_2987 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM1_2994 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_2996 SM00052 Putative diguanylate phosphodiesterase AM1_2996 SM00267 diguanylate cyclase AM1_2998 SM00173 Ras subfamily of RAS small GTPases AM1_2998 SM00174 Rho (Ras homology) subfamily of Ras-like small GTPases AM1_2998 SM00175 Rab subfamily of small GTPases AM1_3005 SM00644 AM1_3005 AM1_3014 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_3020 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_3030 SM00320 WD40 repeats AM1_3031 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_3034 SM00421 helix_turn_helix, Lux Regulon AM1_3046 SM00267 diguanylate cyclase AM1_3048 SM00320 WD40 repeats AM1_3049 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_3052 SM00961 Ribulose bisphosphate carboxylase, small chain AM1_3055 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM1_3057 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_3070 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_3071 SM01004 Delta-aminolevulinic acid dehydratase AM1_3073 SM00382 ATPases associated with a variety of cellular activities AM1_3076 SM00098 Alkaline phosphatase homologues AM1_3091 SM00393 Putative single-stranded nucleic acids-binding domain AM1_3095 SM00382 ATPases associated with a variety of cellular activities AM1_3095 SM00760 Bacterial dnaA protein helix-turn-helix domain AM1_3096 SM00480 DNA polymerase III beta subunit AM1_3100 SM00226 Low molecular weight phosphatase family AM1_3101 SM00421 helix_turn_helix, Lux Regulon AM1_3101 SM00448 cheY-homologous receiver domain AM1_3111 SM00506 Appr-1"-p processing enzyme AM1_3113 SM00434 DNA Topoisomerase IV AM1_3121 SM01248 AM1_3121 AM1_3123 SM00028 Tetratricopeptide repeats AM1_3131 SM00822 AM1_3131 AM1_3151 SM00244 prohibitin homologues AM1_3152 SM00054 EF-hand, calcium binding motif AM1_3155 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_3155 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_3158 SM00938 Nitrogen regulatory protein P-II AM1_3159 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_3160 SM00382 ATPases associated with a variety of cellular activities AM1_3174 SM00028 Tetratricopeptide repeats AM1_3182 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_3182 SM00382 ATPases associated with a variety of cellular activities AM1_3187 SM00422 helix_turn_helix, mercury resistance AM1_3189 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AM1_3189 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_3189 SM00240 Forkhead associated domain AM1_3191 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_3211 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_3218 SM00028 Tetratricopeptide repeats AM1_3230 SM00448 cheY-homologous receiver domain AM1_3230 SM00862 Transcriptional regulatory protein, C terminal AM1_3237 SM00382 ATPases associated with a variety of cellular activities AM1_3241 SM00448 cheY-homologous receiver domain AM1_3244 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM1_3246 SM00049 Domain found in Dishevelled, Egl-10, and Pleckstrin AM1_3253 SM00028 Tetratricopeptide repeats AM1_3254 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_3254 SM00387 Histidine kinase-like ATPases AM1_3255 SM00448 cheY-homologous receiver domain AM1_3259 SM00320 WD40 repeats AM1_3267 SM00634 Bacterial Ig-like domain (group 1) AM1_3267 SM00912 haemagglutination activity domain AM1_3269 SM00028 Tetratricopeptide repeats AM1_3274 SM00248 ankyrin repeats AM1_3280 SM00877 AM1_3280 AM1_3282 SM00897 FIST N domain AM1_3284 SM01204 AM1_3284 AM1_3285 SM00052 Putative diguanylate phosphodiesterase AM1_3285 SM00267 diguanylate cyclase AM1_3302 SM00710 Parallel beta-helix repeats AM1_3311 SM00563 Phosphate acyltransferases AM1_3312 SM00327 von Willebrand factor (vWF) type A domain AM1_3327 SM00925 MltA specific insert domain AM1_3330 SM00052 Putative diguanylate phosphodiesterase AM1_3330 SM00267 diguanylate cyclase AM1_3337 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_3348 SM00382 ATPases associated with a variety of cellular activities AM1_3360 SM00342 helix_turn_helix, arabinose operon control protein AM1_3382 SM00342 helix_turn_helix, arabinose operon control protein AM1_3396 SM00342 helix_turn_helix, arabinose operon control protein AM1_3399 SM00342 helix_turn_helix, arabinose operon control protein AM1_3406 SM00342 helix_turn_helix, arabinose operon control protein AM1_3415 SM00382 ATPases associated with a variety of cellular activities AM1_3419 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_3425 SM00287 Bacterial SH3 domain homologues AM1_3443 SM00563 Phosphate acyltransferases AM1_3444 SM00849 Metallo-beta-lactamase superfamily AM1_3445 SM01130 AM1_3445 AM1_3447 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM1_3450 SM00382 ATPases associated with a variety of cellular activities AM1_3450 SM00994 ClpX C4-type zinc finger AM1_3450 SM01086 C-terminal, D2-small domain, of ClpB protein AM1_3452 SM00853 MutL C terminal dimerisation domain AM1_3452 SM01340 AM1_3452 AM1_3454 SM00052 Putative diguanylate phosphodiesterase AM1_3454 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_3454 SM00091 PAS domain AM1_3454 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_3454 SM00267 diguanylate cyclase AM1_3455 SM00463 Small MutS-related domain AM1_3455 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AM1_3455 SM00534 ATPase domain of DNA mismatch repair MUTS family AM1_3461 SM00448 cheY-homologous receiver domain AM1_3461 SM00862 Transcriptional regulatory protein, C terminal AM1_3462 SM00422 helix_turn_helix, mercury resistance AM1_3465 SM00387 Histidine kinase-like ATPases AM1_3465 SM00388 His Kinase A (phosphoacceptor) domain AM1_3466 SM00448 cheY-homologous receiver domain AM1_3466 SM00862 Transcriptional regulatory protein, C terminal AM1_3468 SM00642 Alpha-amylase domain AM1_3470 SM00947 Carbonic anhydrase AM1_3481 SM00448 cheY-homologous receiver domain AM1_3488 SM00382 ATPases associated with a variety of cellular activities AM1_3492 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_3495 SM00364 Leucine-rich repeats, bacterial type AM1_3495 SM00365 Leucine-rich repeat, SDS22-like subfamily AM1_3495 SM00369 Leucine-rich repeats, typical (most populated) subfamily AM1_3496 SM00248 ankyrin repeats AM1_3497 SM00320 WD40 repeats AM1_3498 SM00267 diguanylate cyclase AM1_3506 SM00028 Tetratricopeptide repeats AM1_3506 SM00382 ATPases associated with a variety of cellular activities AM1_3514 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM1_3515 SM00563 Phosphate acyltransferases AM1_3536 SM00633 Glycosyl hydrolase family 10 AM1_3550 SM00382 ATPases associated with a variety of cellular activities AM1_3555 SM00271 DnaJ molecular chaperone homology domain AM1_3560 SM00530 Helix-turn-helix XRE-family like proteins AM1_3565 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_3565 SM00387 Histidine kinase-like ATPases AM1_3565 SM00388 His Kinase A (phosphoacceptor) domain AM1_3566 SM00448 cheY-homologous receiver domain AM1_3567 SM00387 Histidine kinase-like ATPases AM1_3567 SM00448 cheY-homologous receiver domain AM1_3568 SM00267 diguanylate cyclase AM1_3568 SM00448 cheY-homologous receiver domain AM1_3569 SM00267 diguanylate cyclase AM1_3569 SM00448 cheY-homologous receiver domain AM1_3570 SM00981 AM1_3570 AM1_3572 SM00897 FIST N domain AM1_3572 SM01204 AM1_3572 AM1_3583 SM00855 Phosphoglycerate mutase family AM1_3593 SM00663 RNA polymerase I subunit A N-terminus AM1_3625 SM00984 UDP binding domain AM1_3634 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM1_3642 SM00917 LeuA allosteric (dimerisation) domain AM1_3645 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_3649 SM00642 Alpha-amylase domain AM1_3691 SM00710 Parallel beta-helix repeats AM1_3705 SM00028 Tetratricopeptide repeats AM1_3707 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AM1_3708 SM00937 AM1_3708 AM1_3711 SM00267 diguanylate cyclase AM1_3720 SM00382 ATPases associated with a variety of cellular activities AM1_3724 SM00382 ATPases associated with a variety of cellular activities AM1_3725 SM00448 cheY-homologous receiver domain AM1_3725 SM00862 Transcriptional regulatory protein, C terminal AM1_3733 SM00562 AM1_3733 AM1_3734 SM00014 Acid phosphatase homologues AM1_3739 SM00073 Histidine Phosphotransfer domain AM1_3739 SM00260 Two component signalling adaptor domain AM1_3739 SM00387 Histidine kinase-like ATPases AM1_3739 SM00448 cheY-homologous receiver domain AM1_3739 SM01231 AM1_3739 AM1_3740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM1_3740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_3741 SM00260 Two component signalling adaptor domain AM1_3742 SM00448 cheY-homologous receiver domain AM1_3743 SM00448 cheY-homologous receiver domain AM1_3746 SM00292 breast cancer carboxy-terminal domain AM1_3752 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_3752 SM00287 Bacterial SH3 domain homologues AM1_3753 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM1_3757 SM00530 Helix-turn-helix XRE-family like proteins AM1_3764 SM00244 prohibitin homologues AM1_3776 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_3779 SM00382 ATPases associated with a variety of cellular activities AM1_3783 SM00028 Tetratricopeptide repeats AM1_3784 SM00028 Tetratricopeptide repeats AM1_3787 SM00382 ATPases associated with a variety of cellular activities AM1_3787 SM00962 SRP54-type protein, GTPase domain AM1_3787 SM00963 SRP54-type protein, helical bundle domain AM1_3789 SM00331 Sigma factor PP2C-like phosphatases AM1_3790 SM01011 Aminopeptidase P, N-terminal domain AM1_3796 SM00567 E-Z type HEAT repeats AM1_3821 SM00248 ankyrin repeats AM1_3822 SM00852 Probable molybdopterin binding domain AM1_3827 SM00320 WD40 repeats AM1_3844 SM00421 helix_turn_helix, Lux Regulon AM1_3846 SM00448 cheY-homologous receiver domain AM1_3866 SM00248 ankyrin repeats AM1_3867 SM00248 ankyrin repeats AM1_3868 SM00487 DEAD-like helicases superfamily AM1_3868 SM00490 helicase superfamily c-terminal domain AM1_3869 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_3869 SM00091 PAS domain AM1_3869 SM00387 Histidine kinase-like ATPases AM1_3869 SM00388 His Kinase A (phosphoacceptor) domain AM1_3870 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_3870 SM00091 PAS domain AM1_3870 SM00387 Histidine kinase-like ATPases AM1_3870 SM00388 His Kinase A (phosphoacceptor) domain AM1_3871 SM00448 cheY-homologous receiver domain AM1_3875 SM00052 Putative diguanylate phosphodiesterase AM1_3875 SM00267 diguanylate cyclase AM1_3875 SM00448 cheY-homologous receiver domain AM1_3877 SM00271 DnaJ molecular chaperone homology domain AM1_3878 SM00877 AM1_3878 AM1_3902 SM00028 Tetratricopeptide repeats AM1_3904 SM00919 Malic enzyme, NAD binding domain AM1_3904 SM01274 AM1_3904 AM1_3912 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_3916 SM00448 cheY-homologous receiver domain AM1_3917 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM1_3917 SM00493 AM1_3917 AM1_3918 SM00478 endonuclease III AM1_3918 SM00525 AM1_3918 AM1_3927 SM00903 Flavin reductase like domain AM1_3934 SM00841 Elongation factor P, C-terminal AM1_3934 SM01185 AM1_3934 AM1_3935 SM00052 Putative diguanylate phosphodiesterase AM1_3935 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_3935 SM00091 PAS domain AM1_3935 SM00267 diguanylate cyclase AM1_3937 SM00387 Histidine kinase-like ATPases AM1_3937 SM00448 cheY-homologous receiver domain AM1_3940 SM00996 S-adenosyl-L-homocysteine hydrolase AM1_3940 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM1_3942 SM00028 Tetratricopeptide repeats AM1_3945 SM00028 Tetratricopeptide repeats AM1_3952 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_3953 SM00959 Rho termination factor, N-terminal domain AM1_3964 SM00363 S4 RNA-binding domain AM1_3967 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AM1_3967 SM00240 Forkhead associated domain AM1_3970 SM00363 S4 RNA-binding domain AM1_3971 SM00244 prohibitin homologues AM1_3978 SM01192 AM1_3978 AM1_3978 SM01193 AM1_3978 AM1_3983 SM00363 S4 RNA-binding domain AM1_3983 SM01390 AM1_3983 AM1_3990 SM00028 Tetratricopeptide repeats AM1_3990 SM00271 DnaJ molecular chaperone homology domain AM1_3993 SM00240 Forkhead associated domain AM1_4009 SM00382 ATPases associated with a variety of cellular activities AM1_4028 SM00382 ATPases associated with a variety of cellular activities AM1_4036 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4040 SM00732 Likely ribonuclease with RNase H fold. AM1_4052 SM00487 DEAD-like helicases superfamily AM1_4052 SM00490 helicase superfamily c-terminal domain AM1_4052 SM01142 AM1_4052 AM1_4053 SM00448 cheY-homologous receiver domain AM1_4053 SM00862 Transcriptional regulatory protein, C terminal AM1_4054 SM00073 Histidine Phosphotransfer domain AM1_4054 SM00260 Two component signalling adaptor domain AM1_4054 SM00387 Histidine kinase-like ATPases AM1_4054 SM00448 cheY-homologous receiver domain AM1_4054 SM01231 AM1_4054 AM1_4055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM1_4055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_4056 SM00260 Two component signalling adaptor domain AM1_4057 SM00448 cheY-homologous receiver domain AM1_4059 SM00986 Uracil DNA glycosylase superfamily AM1_4059 SM00987 UreE urease accessory protein, C-terminal domain AM1_4061 SM00388 His Kinase A (phosphoacceptor) domain AM1_4063 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_4064 SM00478 endonuclease III AM1_4064 SM00525 AM1_4064 AM1_4070 SM00840 AM1_4070 AM1_4072 SM00052 Putative diguanylate phosphodiesterase AM1_4072 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_4072 SM00091 PAS domain AM1_4072 SM00240 Forkhead associated domain AM1_4072 SM00267 diguanylate cyclase AM1_4073 SM00257 Lysin motif AM1_4074 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_4075 SM00382 ATPases associated with a variety of cellular activities AM1_4091 SM01321 AM1_4091 AM1_4121 SM00316 Ribosomal protein S1-like RNA-binding domain AM1_4121 SM00732 Likely ribonuclease with RNase H fold. AM1_4135 SM01011 Aminopeptidase P, N-terminal domain AM1_4137 SM00382 ATPases associated with a variety of cellular activities AM1_4137 SM00962 SRP54-type protein, GTPase domain AM1_4137 SM00963 SRP54-type protein, helical bundle domain AM1_4147 SM00487 DEAD-like helicases superfamily AM1_4147 SM00490 helicase superfamily c-terminal domain AM1_4147 SM00982 AM1_4147 AM1_4147 SM01058 CarD-like/TRCF domain AM1_4149 SM00986 Uracil DNA glycosylase superfamily AM1_4149 SM00987 UreE urease accessory protein, C-terminal domain AM1_4210 SM00327 von Willebrand factor (vWF) type A domain AM1_4211 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_4214 SM00091 PAS domain AM1_4214 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_4214 SM00387 Histidine kinase-like ATPases AM1_4214 SM00388 His Kinase A (phosphoacceptor) domain AM1_4216 SM00316 Ribosomal protein S1-like RNA-binding domain AM1_4216 SM00357 Cold shock protein domain AM1_4216 SM00955 AM1_4216 AM1_4228 SM00028 Tetratricopeptide repeats AM1_4240 SM01207 AM1_4240 AM1_4268 SM00235 Zinc-dependent metalloprotease AM1_4270 SM00382 ATPases associated with a variety of cellular activities AM1_4273 SM00240 Forkhead associated domain AM1_4282 SM00387 Histidine kinase-like ATPases AM1_4282 SM00388 His Kinase A (phosphoacceptor) domain AM1_4282 SM00448 cheY-homologous receiver domain AM1_4285 SM00382 ATPases associated with a variety of cellular activities AM1_4295 SM00320 WD40 repeats AM1_4304 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_4304 SM00421 helix_turn_helix, Lux Regulon AM1_4307 SM00028 Tetratricopeptide repeats AM1_4313 SM00873 B3/4 domain AM1_4313 SM00874 tRNA synthetase B5 domain AM1_4313 SM00896 Ferredoxin-fold anticodon binding domain AM1_4314 SM00267 diguanylate cyclase AM1_4318 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4319 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4320 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4321 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4322 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4323 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4331 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AM1_4331 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AM1_4337 SM00849 Metallo-beta-lactamase superfamily AM1_4342 SM00912 haemagglutination activity domain AM1_4347 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AM1_4347 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AM1_4350 SM01001 AIR carboxylase AM1_4353 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_4356 SM00363 S4 RNA-binding domain AM1_4362 SM00028 Tetratricopeptide repeats AM1_4364 SM00382 ATPases associated with a variety of cellular activities AM1_4367 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AM1_4369 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM1_4370 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_4373 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_4391 SM00382 ATPases associated with a variety of cellular activities AM1_4394 SM00028 Tetratricopeptide repeats AM1_4412 SM00883 Chaperonin 10 Kd subunit AM1_4430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_4430 SM00387 Histidine kinase-like ATPases AM1_4430 SM00388 His Kinase A (phosphoacceptor) domain AM1_4430 SM00448 cheY-homologous receiver domain AM1_4435 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AM1_4437 SM01225 AM1_4437 AM1_4444 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM1_4447 SM00382 ATPases associated with a variety of cellular activities AM1_4459 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_4459 SM00245 tail specific protease AM1_4464 SM00989 AM1_4464 AM1_4467 SM00989 AM1_4467 AM1_4480 SM00320 WD40 repeats AM1_4488 SM00327 von Willebrand factor (vWF) type A domain AM1_4488 SM00609 Vault protein Inter-alpha-Trypsin domain AM1_4499 SM00387 Histidine kinase-like ATPases AM1_4499 SM00433 TopoisomeraseII AM1_4510 SM00226 Low molecular weight phosphatase family AM1_4519 SM00240 Forkhead associated domain AM1_4521 SM00240 Forkhead associated domain AM1_4531 SM00710 Parallel beta-helix repeats AM1_4536 SM00448 cheY-homologous receiver domain AM1_4537 SM00091 PAS domain AM1_4537 SM00240 Forkhead associated domain AM1_4537 SM00387 Histidine kinase-like ATPases AM1_4537 SM00388 His Kinase A (phosphoacceptor) domain AM1_4538 SM00836 DALR anticodon binding domain AM1_4538 SM01016 Arginyl tRNA synthetase N terminal dom AM1_4542 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4548 SM00829 Enoylreductase AM1_4555 SM00316 Ribosomal protein S1-like RNA-binding domain AM1_4571 SM00267 diguanylate cyclase AM1_4571 SM01079 AM1_4571 AM1_4590 SM00382 ATPases associated with a variety of cellular activities AM1_4591 SM00028 Tetratricopeptide repeats AM1_4612 SM00320 WD40 repeats AM1_4613 SM00240 Forkhead associated domain AM1_4616 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4624 SM00382 ATPases associated with a variety of cellular activities AM1_4633 SM01133 AM1_4633 AM1_4653 SM00028 Tetratricopeptide repeats AM1_4660 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_4667 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_4667 SM00245 tail specific protease AM1_4668 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM1_4676 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AM1_4679 SM00028 Tetratricopeptide repeats AM1_4699 SM01382 AM1_4699 AM1_4699 SM01383 AM1_4699 AM1_4702 SM00322 K homology RNA-binding domain AM1_4706 SM01374 AM1_4706 AM1_4707 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM1_4716 SM00316 Ribosomal protein S1-like RNA-binding domain AM1_4718 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_4727 SM00327 von Willebrand factor (vWF) type A domain AM1_4730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_4730 SM00421 helix_turn_helix, Lux Regulon AM1_4731 SM00450 Rhodanese Homology Domain AM1_4732 SM00028 Tetratricopeptide repeats AM1_4732 SM00320 WD40 repeats AM1_4737 SM00320 WD40 repeats AM1_4747 SM00173 Ras subfamily of RAS small GTPases AM1_4747 SM00174 Rho (Ras homology) subfamily of Ras-like small GTPases AM1_4747 SM00175 Rab subfamily of small GTPases AM1_4748 SM00028 Tetratricopeptide repeats AM1_4749 SM00028 Tetratricopeptide repeats AM1_4750 SM00028 Tetratricopeptide repeats AM1_4753 SM00382 ATPases associated with a variety of cellular activities AM1_4763 SM00382 ATPases associated with a variety of cellular activities AM1_4772 SM00267 diguanylate cyclase AM1_4789 SM00479 AM1_4789 AM1_4791 SM00320 WD40 repeats AM1_4791 SM00773 Proposed nucleic acid binding domain AM1_4793 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_4793 SM00387 Histidine kinase-like ATPases AM1_4793 SM00388 His Kinase A (phosphoacceptor) domain AM1_4793 SM00448 cheY-homologous receiver domain AM1_4794 SM00448 cheY-homologous receiver domain AM1_4795 SM00387 Histidine kinase-like ATPases AM1_4795 SM00388 His Kinase A (phosphoacceptor) domain AM1_4800 SM01236 AM1_4800 AM1_4803 SM01004 Delta-aminolevulinic acid dehydratase AM1_4806 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AM1_4810 SM00955 AM1_4810 AM1_4818 SM00829 Enoylreductase AM1_4822 SM00387 Histidine kinase-like ATPases AM1_4822 SM00388 His Kinase A (phosphoacceptor) domain AM1_4822 SM00448 cheY-homologous receiver domain AM1_4823 SM00382 ATPases associated with a variety of cellular activities AM1_4827 SM00267 diguanylate cyclase AM1_4838 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_4849 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_4849 SM00245 tail specific protease AM1_4872 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM1_4872 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM1_4872 SM00493 AM1_4872 AM1_4886 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_4907 SM00382 ATPases associated with a variety of cellular activities AM1_4915 SM00905 Dihydroneopterin aldolase AM1_4917 SM00382 ATPases associated with a variety of cellular activities AM1_4929 SM00363 S4 RNA-binding domain AM1_4945 SM00052 Putative diguanylate phosphodiesterase AM1_4945 SM00267 diguanylate cyclase AM1_4948 SM00448 cheY-homologous receiver domain AM1_4952 SM00382 ATPases associated with a variety of cellular activities AM1_4965 SM00912 haemagglutination activity domain AM1_4968 SM00912 haemagglutination activity domain AM1_4972 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_4972 SM00245 tail specific protease AM1_4979 SM00267 diguanylate cyclase AM1_4979 SM00448 cheY-homologous receiver domain AM1_4980 SM00052 Putative diguanylate phosphodiesterase AM1_4980 SM00267 diguanylate cyclase AM1_4980 SM00448 cheY-homologous receiver domain AM1_4981 SM00052 Putative diguanylate phosphodiesterase AM1_4981 SM00267 diguanylate cyclase AM1_4981 SM00448 cheY-homologous receiver domain AM1_4989 SM00320 WD40 repeats AM1_4991 SM00342 helix_turn_helix, arabinose operon control protein AM1_4994 SM00829 Enoylreductase AM1_4996 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_4996 SM00091 PAS domain AM1_5031 SM00382 ATPases associated with a variety of cellular activities AM1_5034 SM00382 ATPases associated with a variety of cellular activities AM1_5039 SM00382 ATPases associated with a variety of cellular activities AM1_5048 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_5051 SM00387 Histidine kinase-like ATPases AM1_5051 SM00388 His Kinase A (phosphoacceptor) domain AM1_5052 SM00421 helix_turn_helix, Lux Regulon AM1_5052 SM00448 cheY-homologous receiver domain AM1_5055 SM00331 Sigma factor PP2C-like phosphatases AM1_5055 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AM1_5056 SM00448 cheY-homologous receiver domain AM1_5057 SM00387 Histidine kinase-like ATPases AM1_5057 SM00388 His Kinase A (phosphoacceptor) domain AM1_5057 SM00448 cheY-homologous receiver domain AM1_5058 SM00387 Histidine kinase-like ATPases AM1_5058 SM00448 cheY-homologous receiver domain AM1_5063 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AM1_5067 SM00421 helix_turn_helix, Lux Regulon AM1_5067 SM00448 cheY-homologous receiver domain AM1_5068 SM00387 Histidine kinase-like ATPases AM1_5076 SM00448 cheY-homologous receiver domain AM1_5077 SM00073 Histidine Phosphotransfer domain AM1_5077 SM00260 Two component signalling adaptor domain AM1_5077 SM00387 Histidine kinase-like ATPases AM1_5077 SM00448 cheY-homologous receiver domain AM1_5077 SM01231 AM1_5077 AM1_5078 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM1_5079 SM00260 Two component signalling adaptor domain AM1_5080 SM00448 cheY-homologous receiver domain AM1_5081 SM00448 cheY-homologous receiver domain AM1_5088 SM00052 Putative diguanylate phosphodiesterase AM1_5088 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5088 SM00267 diguanylate cyclase AM1_5096 SM00448 cheY-homologous receiver domain AM1_5096 SM00862 Transcriptional regulatory protein, C terminal AM1_5107 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5107 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_5107 SM00091 PAS domain AM1_5107 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5107 SM00387 Histidine kinase-like ATPases AM1_5107 SM00388 His Kinase A (phosphoacceptor) domain AM1_5107 SM00448 cheY-homologous receiver domain AM1_5108 SM00387 Histidine kinase-like ATPases AM1_5108 SM00448 cheY-homologous receiver domain AM1_5118 SM00052 Putative diguanylate phosphodiesterase AM1_5118 SM00267 diguanylate cyclase AM1_5120 SM00382 ATPases associated with a variety of cellular activities AM1_5135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5135 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5135 SM00387 Histidine kinase-like ATPases AM1_5135 SM00388 His Kinase A (phosphoacceptor) domain AM1_5135 SM00448 cheY-homologous receiver domain AM1_5140 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_5140 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_5142 SM00360 RNA recognition motif AM1_5145 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5145 SM00387 Histidine kinase-like ATPases AM1_5145 SM00388 His Kinase A (phosphoacceptor) domain AM1_5148 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_5150 SM00487 DEAD-like helicases superfamily AM1_5150 SM00490 helicase superfamily c-terminal domain AM1_5154 SM00052 Putative diguanylate phosphodiesterase AM1_5154 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5154 SM00267 diguanylate cyclase AM1_5157 SM00028 Tetratricopeptide repeats AM1_5157 SM00255 Toll - interleukin 1 - resistance AM1_5164 SM00998 Adenylosuccinate lyase C-terminus AM1_5165 SM01116 AM1_5165 AM1_5166 SM00382 ATPases associated with a variety of cellular activities AM1_5169 SM00342 helix_turn_helix, arabinose operon control protein AM1_5169 SM00448 cheY-homologous receiver domain AM1_5170 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_5170 SM00091 PAS domain AM1_5170 SM00387 Histidine kinase-like ATPases AM1_5170 SM00388 His Kinase A (phosphoacceptor) domain AM1_5180 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5186 SM00861 Transketolase, pyrimidine binding domain AM1_5192 SM00240 Forkhead associated domain AM1_5193 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AM1_5196 SM00967 RNA 2'-O ribose methyltransferase substrate binding AM1_5197 SM00535 Ribonuclease III family AM1_5201 SM00470 ParB-like nuclease domain AM1_5211 SM00052 Putative diguanylate phosphodiesterase AM1_5211 SM00267 diguanylate cyclase AM1_5211 SM00448 cheY-homologous receiver domain AM1_5225 SM00487 DEAD-like helicases superfamily AM1_5225 SM00490 helicase superfamily c-terminal domain AM1_5227 SM00052 Putative diguanylate phosphodiesterase AM1_5227 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5227 SM00240 Forkhead associated domain AM1_5227 SM00267 diguanylate cyclase AM1_5228 SM00049 Domain found in Dishevelled, Egl-10, and Pleckstrin AM1_5250 SM00028 Tetratricopeptide repeats AM1_5255 SM00838 Elongation factor G C-terminus AM1_5261 SM00387 Histidine kinase-like ATPases AM1_5261 SM00388 His Kinase A (phosphoacceptor) domain AM1_5262 SM00448 cheY-homologous receiver domain AM1_5262 SM00862 Transcriptional regulatory protein, C terminal AM1_5275 SM00382 ATPases associated with a variety of cellular activities AM1_5278 SM00460 Transglutaminase/protease-like homologues AM1_5290 SM00244 prohibitin homologues AM1_5304 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5308 SM00091 PAS domain AM1_5308 SM00387 Histidine kinase-like ATPases AM1_5308 SM00388 His Kinase A (phosphoacceptor) domain AM1_5308 SM00448 cheY-homologous receiver domain AM1_5312 SM00933 AM1_5312 AM1_5313 SM00287 Bacterial SH3 domain homologues AM1_5313 SM00646 AM1_5313 AM1_5324 SM00320 WD40 repeats AM1_5328 SM00382 ATPases associated with a variety of cellular activities AM1_5344 SM00506 Appr-1"-p processing enzyme AM1_5354 SM00240 Forkhead associated domain AM1_5359 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5359 SM00240 Forkhead associated domain AM1_5360 SM00331 Sigma factor PP2C-like phosphatases AM1_5360 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AM1_5369 SM00382 ATPases associated with a variety of cellular activities AM1_5380 SM00877 AM1_5380 AM1_5381 SM00877 AM1_5381 AM1_5383 SM00961 Ribulose bisphosphate carboxylase, small chain AM1_5385 SM00877 AM1_5385 AM1_5386 SM00788 Adenylosuccinate synthetase AM1_5388 SM00028 Tetratricopeptide repeats AM1_5392 SM00046 Diacylglycerol kinase catalytic domain (presumed) AM1_5392 SM00851 MGS-like domain AM1_5412 SM00849 Metallo-beta-lactamase superfamily AM1_5413 SM00851 MGS-like domain AM1_5413 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM1_5416 SM01321 AM1_5416 AM1_5420 SM01387 AM1_5420 AM1_5437 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM1_5440 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_5445 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_5446 SM00028 Tetratricopeptide repeats AM1_5447 SM00382 ATPases associated with a variety of cellular activities AM1_5454 SM00028 Tetratricopeptide repeats AM1_5467 SM00028 Tetratricopeptide repeats AM1_5468 SM00342 helix_turn_helix, arabinose operon control protein AM1_5469 SM00320 WD40 repeats AM1_5480 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5483 SM00382 ATPases associated with a variety of cellular activities AM1_5490 SM00938 Nitrogen regulatory protein P-II AM1_5497 SM00072 Guanylate kinase homologues. AM1_5505 SM00028 Tetratricopeptide repeats AM1_5516 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_5518 SM00342 helix_turn_helix, arabinose operon control protein AM1_5521 SM00861 Transketolase, pyrimidine binding domain AM1_5522 SM00825 Beta-ketoacyl synthase AM1_5527 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5528 SM00387 Histidine kinase-like ATPases AM1_5528 SM00388 His Kinase A (phosphoacceptor) domain AM1_5529 SM00487 DEAD-like helicases superfamily AM1_5529 SM00490 helicase superfamily c-terminal domain AM1_5539 SM00387 Histidine kinase-like ATPases AM1_5539 SM00388 His Kinase A (phosphoacceptor) domain AM1_5540 SM00448 cheY-homologous receiver domain AM1_5540 SM00862 Transcriptional regulatory protein, C terminal AM1_5544 SM00028 Tetratricopeptide repeats AM1_5550 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_5553 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM1_5553 SM00245 tail specific protease AM1_5554 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_5557 SM00360 RNA recognition motif AM1_5569 SM00052 Putative diguanylate phosphodiesterase AM1_5569 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_5569 SM00091 PAS domain AM1_5569 SM00240 Forkhead associated domain AM1_5569 SM00267 diguanylate cyclase AM1_5584 SM00028 Tetratricopeptide repeats AM1_5588 SM00195 Dual specificity phosphatase, catalytic domain AM1_5591 SM00341 Helicase and RNase D C-terminal AM1_5591 SM00487 DEAD-like helicases superfamily AM1_5591 SM00490 helicase superfamily c-terminal domain AM1_5591 SM00956 AM1_5591 AM1_5595 SM01321 AM1_5595 AM1_5596 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AM1_5596 SM00534 ATPase domain of DNA mismatch repair MUTS family AM1_5603 SM00382 ATPases associated with a variety of cellular activities AM1_5605 SM00331 Sigma factor PP2C-like phosphatases AM1_5605 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AM1_5606 SM00382 ATPases associated with a variety of cellular activities AM1_5617 SM00028 Tetratricopeptide repeats AM1_5623 SM00052 Putative diguanylate phosphodiesterase AM1_5623 SM00267 diguanylate cyclase AM1_5624 SM00062 Bacterial periplasmic substrate-binding proteins AM1_5632 SM00822 AM1_5632 AM1_5634 SM00822 AM1_5634 AM1_5637 SM00267 diguanylate cyclase AM1_5637 SM00448 cheY-homologous receiver domain AM1_5638 SM00387 Histidine kinase-like ATPases AM1_5638 SM00388 His Kinase A (phosphoacceptor) domain AM1_5638 SM01080 AM1_5638 AM1_5643 SM00028 Tetratricopeptide repeats AM1_5643 SM00912 haemagglutination activity domain AM1_5662 SM00382 ATPases associated with a variety of cellular activities AM1_5663 SM00448 cheY-homologous receiver domain AM1_5663 SM00862 Transcriptional regulatory protein, C terminal AM1_5667 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_5668 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_5668 SM00387 Histidine kinase-like ATPases AM1_5668 SM00388 His Kinase A (phosphoacceptor) domain AM1_5668 SM00448 cheY-homologous receiver domain AM1_5687 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5688 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_5688 SM00091 PAS domain AM1_5688 SM00387 Histidine kinase-like ATPases AM1_5688 SM00388 His Kinase A (phosphoacceptor) domain AM1_5688 SM00448 cheY-homologous receiver domain AM1_5693 SM00271 DnaJ molecular chaperone homology domain AM1_5700 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5700 SM00287 Bacterial SH3 domain homologues AM1_5704 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5704 SM00387 Histidine kinase-like ATPases AM1_5704 SM00388 His Kinase A (phosphoacceptor) domain AM1_5704 SM00448 cheY-homologous receiver domain AM1_5720 SM00382 ATPases associated with a variety of cellular activities AM1_5737 SM00434 DNA Topoisomerase IV AM1_5741 SM00028 Tetratricopeptide repeats AM1_5751 SM00382 ATPases associated with a variety of cellular activities AM1_5753 SM01329 AM1_5753 AM1_5755 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5761 SM00984 UDP binding domain AM1_5778 SM00877 AM1_5778 AM1_5779 SM00798 AICARFT/IMPCHase bienzyme AM1_5779 SM00851 MGS-like domain AM1_5783 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5785 SM00382 ATPases associated with a variety of cellular activities AM1_5788 SM00849 Metallo-beta-lactamase superfamily AM1_5789 SM00710 Parallel beta-helix repeats AM1_5798 SM00729 Elongator protein 3, MiaB family, Radical SAM AM1_5801 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_5812 SM00989 AM1_5812 AM1_5814 SM00989 AM1_5814 AM1_5844 SM00342 helix_turn_helix, arabinose operon control protein AM1_5858 SM00267 diguanylate cyclase AM1_5858 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_5859 SM00052 Putative diguanylate phosphodiesterase AM1_5859 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5859 SM00267 diguanylate cyclase AM1_5891 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_5892 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_5892 SM00091 PAS domain AM1_5892 SM00138 Methyltransferase, chemotaxis proteins AM1_5892 SM00387 Histidine kinase-like ATPases AM1_5892 SM00388 His Kinase A (phosphoacceptor) domain AM1_5894 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5894 SM00448 cheY-homologous receiver domain AM1_5894 SM00911 HWE histidine kinase AM1_5895 SM00448 cheY-homologous receiver domain AM1_5896 SM00448 cheY-homologous receiver domain AM1_5897 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_5897 SM00091 PAS domain AM1_5897 SM00387 Histidine kinase-like ATPases AM1_5897 SM00388 His Kinase A (phosphoacceptor) domain AM1_5899 SM00347 helix_turn_helix multiple antibiotic resistance protein AM1_5906 SM00411 bacterial (prokaryotic) histone like domain AM1_5914 SM00244 prohibitin homologues AM1_5920 SM00316 Ribosomal protein S1-like RNA-binding domain AM1_5920 SM00322 K homology RNA-binding domain AM1_5922 SM00487 DEAD-like helicases superfamily AM1_5922 SM00490 helicase superfamily c-terminal domain AM1_5923 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AM1_5924 SM00387 Histidine kinase-like ATPases AM1_5924 SM00388 His Kinase A (phosphoacceptor) domain AM1_5925 SM00448 cheY-homologous receiver domain AM1_5927 SM00387 Histidine kinase-like ATPases AM1_5932 SM00028 Tetratricopeptide repeats AM1_5932 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_5937 SM00382 ATPases associated with a variety of cellular activities AM1_5943 SM00382 ATPases associated with a variety of cellular activities AM1_5948 SM00530 Helix-turn-helix XRE-family like proteins AM1_5960 SM00267 diguanylate cyclase AM1_5960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_5968 SM00028 Tetratricopeptide repeats AM1_5969 SM00912 haemagglutination activity domain AM1_5971 SM01080 AM1_5971 AM1_5974 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5974 SM00387 Histidine kinase-like ATPases AM1_5974 SM00388 His Kinase A (phosphoacceptor) domain AM1_5974 SM00448 cheY-homologous receiver domain AM1_5975 SM00073 Histidine Phosphotransfer domain AM1_5975 SM00387 Histidine kinase-like ATPases AM1_5975 SM00388 His Kinase A (phosphoacceptor) domain AM1_5975 SM00448 cheY-homologous receiver domain AM1_5976 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_5976 SM00091 PAS domain AM1_5976 SM00331 Sigma factor PP2C-like phosphatases AM1_5976 SM00448 cheY-homologous receiver domain AM1_5977 SM00989 AM1_5977 AM1_5981 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. AM1_5988 SM00382 ATPases associated with a variety of cellular activities AM1_5989 SM00382 ATPases associated with a variety of cellular activities AM1_5995 SM00834 Putative regulatory protein AM1_5997 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_5997 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_5997 SM00387 Histidine kinase-like ATPases AM1_5997 SM00388 His Kinase A (phosphoacceptor) domain AM1_5997 SM00448 cheY-homologous receiver domain AM1_6006 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_6015 SM00320 WD40 repeats AM1_6038 SM00382 ATPases associated with a variety of cellular activities AM1_6050 SM00382 ATPases associated with a variety of cellular activities AM1_6053 SM00091 PAS domain AM1_6053 SM00267 diguanylate cyclase AM1_6065 SM00028 Tetratricopeptide repeats AM1_6067 SM00387 Histidine kinase-like ATPases AM1_6067 SM00388 His Kinase A (phosphoacceptor) domain AM1_6069 SM00448 cheY-homologous receiver domain AM1_6070 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_6070 SM00387 Histidine kinase-like ATPases AM1_6070 SM00388 His Kinase A (phosphoacceptor) domain AM1_6070 SM00448 cheY-homologous receiver domain AM1_6071 SM00320 WD40 repeats AM1_6078 SM00028 Tetratricopeptide repeats AM1_6082 SM00829 Enoylreductase AM1_6085 SM00421 helix_turn_helix, Lux Regulon AM1_6086 SM00028 Tetratricopeptide repeats AM1_6086 SM00421 helix_turn_helix, Lux Regulon AM1_6100 SM00829 Enoylreductase AM1_6106 SM00342 helix_turn_helix, arabinose operon control protein AM1_6135 SM00342 helix_turn_helix, arabinose operon control protein AM1_6151 SM00382 ATPases associated with a variety of cellular activities AM1_6173 SM00411 bacterial (prokaryotic) histone like domain AM1_6181 SM00530 Helix-turn-helix XRE-family like proteins AM1_6199 SM00267 diguanylate cyclase AM1_6205 SM00448 cheY-homologous receiver domain AM1_6205 SM00862 Transcriptional regulatory protein, C terminal AM1_6206 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_6206 SM00387 Histidine kinase-like ATPases AM1_6206 SM00388 His Kinase A (phosphoacceptor) domain AM1_6215 SM00530 Helix-turn-helix XRE-family like proteins AM1_6220 SM00320 WD40 repeats AM1_6223 SM00320 WD40 repeats AM1_6226 SM00507 HNH nucleases AM1_6232 SM00342 helix_turn_helix, arabinose operon control protein AM1_6234 SM00829 Enoylreductase AM1_6238 SM00382 ATPases associated with a variety of cellular activities AM1_6239 SM00710 Parallel beta-helix repeats AM1_6264 SM00479 AM1_6264 AM1_6265 SM00240 Forkhead associated domain AM1_6278 SM01321 AM1_6278 AM1_6282 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_6282 SM00387 Histidine kinase-like ATPases AM1_6292 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_6300 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_6305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_6305 SM00387 Histidine kinase-like ATPases AM1_6305 SM00388 His Kinase A (phosphoacceptor) domain AM1_6305 SM00448 cheY-homologous receiver domain AM1_6306 SM00448 cheY-homologous receiver domain AM1_6307 SM00530 Helix-turn-helix XRE-family like proteins AM1_6308 SM00421 helix_turn_helix, Lux Regulon AM1_6312 SM00028 Tetratricopeptide repeats AM1_6313 SM00421 helix_turn_helix, Lux Regulon AM1_6313 SM00448 cheY-homologous receiver domain AM1_6315 SM00342 helix_turn_helix, arabinose operon control protein AM1_6316 SM00342 helix_turn_helix, arabinose operon control protein AM1_6319 SM01350 AM1_6319 AM1_6329 SM00028 Tetratricopeptide repeats AM1_6330 SM00028 Tetratricopeptide repeats AM1_6332 SM00448 cheY-homologous receiver domain AM1_6332 SM00862 Transcriptional regulatory protein, C terminal AM1_6333 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_6333 SM00387 Histidine kinase-like ATPases AM1_6333 SM00388 His Kinase A (phosphoacceptor) domain AM1_6335 SM00831 Cation transporter/ATPase, N-terminus AM1_6338 SM01080 AM1_6338 AM1_6343 SM00230 Calpain-like thiol protease family. AM1_6349 SM00173 Ras subfamily of RAS small GTPases AM1_6349 SM00175 Rab subfamily of small GTPases AM1_6357 SM00387 Histidine kinase-like ATPases AM1_6357 SM00448 cheY-homologous receiver domain AM1_6358 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_6358 SM00091 PAS domain AM1_6358 SM00387 Histidine kinase-like ATPases AM1_6358 SM00388 His Kinase A (phosphoacceptor) domain AM1_6358 SM00448 cheY-homologous receiver domain AM1_6359 SM00387 Histidine kinase-like ATPases AM1_6359 SM00388 His Kinase A (phosphoacceptor) domain AM1_6359 SM00448 cheY-homologous receiver domain AM1_6363 SM00822 AM1_6363 AM1_6365 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_6367 SM00530 Helix-turn-helix XRE-family like proteins AM1_6370 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AM1_6374 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_6374 SM00387 Histidine kinase-like ATPases AM1_6374 SM00388 His Kinase A (phosphoacceptor) domain AM1_6376 SM00855 Phosphoglycerate mutase family AM1_6381 SM00382 ATPases associated with a variety of cellular activities AM1_6386 SM00448 cheY-homologous receiver domain AM1_6387 SM00448 cheY-homologous receiver domain AM1_6387 SM00862 Transcriptional regulatory protein, C terminal AM1_6392 SM00872 Alpha mannosidase, middle domain AM1_6401 SM00320 WD40 repeats AM1_6402 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_6410 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_A0014 SM00382 ATPases associated with a variety of cellular activities AM1_A0018 SM00387 Histidine kinase-like ATPases AM1_A0019 SM00448 cheY-homologous receiver domain AM1_A0038 SM00470 ParB-like nuclease domain AM1_A0040 SM00028 Tetratricopeptide repeats AM1_A0040 SM00382 ATPases associated with a variety of cellular activities AM1_A0044 SM00358 Double-stranded RNA binding motif AM1_A0051 SM00360 RNA recognition motif AM1_A0060 SM00358 Double-stranded RNA binding motif AM1_A0071 SM00360 RNA recognition motif AM1_A0092 SM00382 ATPases associated with a variety of cellular activities AM1_A0095 SM00358 Double-stranded RNA binding motif AM1_A0095 SM00955 AM1_A0095 AM1_A0096 SM00360 RNA recognition motif AM1_A0114 SM00240 Forkhead associated domain AM1_A0141 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_A0141 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_A0146 SM00899 AM1_A0146 AM1_A0154 SM00382 ATPases associated with a variety of cellular activities AM1_A0160 SM00342 helix_turn_helix, arabinose operon control protein AM1_A0161 SM00382 ATPases associated with a variety of cellular activities AM1_A0169 SM00342 helix_turn_helix, arabinose operon control protein AM1_A0172 SM00382 ATPases associated with a variety of cellular activities AM1_A0173 SM00382 ATPases associated with a variety of cellular activities AM1_A0199 SM00342 helix_turn_helix, arabinose operon control protein AM1_A0224 SM00342 helix_turn_helix, arabinose operon control protein AM1_A0226 SM00823 Phosphopantetheine attachment site AM1_A0228 SM00822 AM1_A0228 AM1_A0228 SM00825 Beta-ketoacyl synthase AM1_A0228 SM00826 AM1_A0228 AM1_A0228 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM1_A0230 SM00823 Phosphopantetheine attachment site AM1_A0231 SM00822 AM1_A0231 AM1_A0231 SM00823 Phosphopantetheine attachment site AM1_A0231 SM00825 Beta-ketoacyl synthase AM1_A0231 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM1_A0232 SM00823 Phosphopantetheine attachment site AM1_A0235 SM00823 Phosphopantetheine attachment site AM1_A0236 SM00823 Phosphopantetheine attachment site AM1_A0252 SM00470 ParB-like nuclease domain AM1_A0256 SM00507 HNH nucleases AM1_A0259 SM00382 ATPases associated with a variety of cellular activities AM1_A0275 SM00342 helix_turn_helix, arabinose operon control protein AM1_A0277 SM00947 Carbonic anhydrase AM1_A0282 SM00100 Cyclic nucleotide-monophosphate binding domain AM1_A0282 SM00382 ATPases associated with a variety of cellular activities AM1_A0293 SM00028 Tetratricopeptide repeats AM1_A0293 SM00912 haemagglutination activity domain AM1_A0298 SM00320 WD40 repeats AM1_A0302 SM00849 Metallo-beta-lactamase superfamily AM1_A0313 SM00470 ParB-like nuclease domain AM1_A0316 SM00028 Tetratricopeptide repeats AM1_A0320 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_A0344 SM00530 Helix-turn-helix XRE-family like proteins AM1_A0348 SM00530 Helix-turn-helix XRE-family like proteins AM1_A0353 SM00411 bacterial (prokaryotic) histone like domain AM1_A0368 SM00448 cheY-homologous receiver domain AM1_A0369 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_A0369 SM00387 Histidine kinase-like ATPases AM1_A0369 SM00388 His Kinase A (phosphoacceptor) domain AM1_A0369 SM00448 cheY-homologous receiver domain AM1_A0391 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_B0002 SM00382 ATPases associated with a variety of cellular activities AM1_B0006 SM00382 ATPases associated with a variety of cellular activities AM1_B0013 SM00382 ATPases associated with a variety of cellular activities AM1_B0015 SM00028 Tetratricopeptide repeats AM1_B0017 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_B0017 SM00091 PAS domain AM1_B0028 SM00470 ParB-like nuclease domain AM1_B0032 SM01022 AM1_B0032 AM1_B0037 SM00947 Carbonic anhydrase AM1_B0050 SM00382 ATPases associated with a variety of cellular activities AM1_B0061 SM00860 SMI1 / KNR4 family AM1_B0086 SM00411 bacterial (prokaryotic) histone like domain AM1_B0112 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_B0146 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_B0155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_B0157 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_B0166 SM00840 AM1_B0166 AM1_B0191 SM00028 Tetratricopeptide repeats AM1_B0191 SM00320 WD40 repeats AM1_B0207 SM00382 ATPases associated with a variety of cellular activities AM1_B0232 SM00912 haemagglutination activity domain AM1_B0267 SM00382 ATPases associated with a variety of cellular activities AM1_B0298 SM00028 Tetratricopeptide repeats AM1_B0298 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_B0299 SM00028 Tetratricopeptide repeats AM1_B0301 SM00912 haemagglutination activity domain AM1_B0307 SM00320 WD40 repeats AM1_B0311 SM00318 Staphylococcal nuclease homologues AM1_B0319 SM00320 WD40 repeats AM1_B0330 SM00530 Helix-turn-helix XRE-family like proteins AM1_B0334 SM00507 HNH nucleases AM1_B0349 SM00320 WD40 repeats AM1_B0350 SM00710 Parallel beta-helix repeats AM1_B0364 SM00318 Staphylococcal nuclease homologues AM1_B0374 SM00530 Helix-turn-helix XRE-family like proteins AM1_B0378 SM00382 ATPases associated with a variety of cellular activities AM1_B0389 SM00320 WD40 repeats AM1_B0413 SM00382 ATPases associated with a variety of cellular activities AM1_B0414 SM00382 ATPases associated with a variety of cellular activities AM1_B0417 SM00358 Double-stranded RNA binding motif AM1_B0417 SM00955 AM1_B0417 AM1_C0012 SM00530 Helix-turn-helix XRE-family like proteins AM1_C0014 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_C0014 SM00091 PAS domain AM1_C0014 SM00387 Histidine kinase-like ATPases AM1_C0014 SM00388 His Kinase A (phosphoacceptor) domain AM1_C0014 SM00448 cheY-homologous receiver domain AM1_C0017 SM00421 helix_turn_helix, Lux Regulon AM1_C0017 SM00448 cheY-homologous receiver domain AM1_C0023 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_C0023 SM00387 Histidine kinase-like ATPases AM1_C0023 SM00388 His Kinase A (phosphoacceptor) domain AM1_C0023 SM00448 cheY-homologous receiver domain AM1_C0048 SM00360 RNA recognition motif AM1_C0050 SM00342 helix_turn_helix, arabinose operon control protein AM1_C0054 SM00829 Enoylreductase AM1_C0058 SM00829 Enoylreductase AM1_C0066 SM00382 ATPases associated with a variety of cellular activities AM1_C0074 SM00360 RNA recognition motif AM1_C0075 SM00244 prohibitin homologues AM1_C0079 SM00382 ATPases associated with a variety of cellular activities AM1_C0086 SM00448 cheY-homologous receiver domain AM1_C0086 SM00862 Transcriptional regulatory protein, C terminal AM1_C0093 SM01094 CpcD/allophycocyanin linker domain AM1_C0094 SM01094 CpcD/allophycocyanin linker domain AM1_C0101 SM00448 cheY-homologous receiver domain AM1_C0101 SM00862 Transcriptional regulatory protein, C terminal AM1_C0118 SM00567 E-Z type HEAT repeats AM1_C0180 SM00448 cheY-homologous receiver domain AM1_C0193 SM00862 Transcriptional regulatory protein, C terminal AM1_C0215 SM01094 CpcD/allophycocyanin linker domain AM1_C0216 SM01094 CpcD/allophycocyanin linker domain AM1_C0236 SM00342 helix_turn_helix, arabinose operon control protein AM1_C0251 SM00857 Resolvase, N terminal domain AM1_C0253 SM01321 AM1_C0253 AM1_C0259 SM00448 cheY-homologous receiver domain AM1_C0259 SM00862 Transcriptional regulatory protein, C terminal AM1_C0288 SM00470 ParB-like nuclease domain AM1_C0304 SM00448 cheY-homologous receiver domain AM1_C0304 SM00862 Transcriptional regulatory protein, C terminal AM1_C0305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_C0305 SM00387 Histidine kinase-like ATPases AM1_C0305 SM00388 His Kinase A (phosphoacceptor) domain AM1_C0324 SM00530 Helix-turn-helix XRE-family like proteins AM1_C0338 SM00411 bacterial (prokaryotic) histone like domain AM1_C0353 SM00411 bacterial (prokaryotic) histone like domain AM1_C0365 SM00448 cheY-homologous receiver domain AM1_C0366 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM1_C0366 SM00387 Histidine kinase-like ATPases AM1_C0366 SM00388 His Kinase A (phosphoacceptor) domain AM1_C0366 SM00448 cheY-homologous receiver domain AM1_D0001 SM00360 RNA recognition motif AM1_D0002 SM00358 Double-stranded RNA binding motif AM1_D0003 SM00955 AM1_D0003 AM1_D0011 SM00448 cheY-homologous receiver domain AM1_D0011 SM00862 Transcriptional regulatory protein, C terminal AM1_D0045 SM00028 Tetratricopeptide repeats AM1_D0056 SM00382 ATPases associated with a variety of cellular activities AM1_D0086 SM00028 Tetratricopeptide repeats AM1_D0087 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM1_D0087 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM1_D0087 SM00493 AM1_D0087 AM1_D0105 SM00530 Helix-turn-helix XRE-family like proteins AM1_D0123 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_D0125 SM00448 cheY-homologous receiver domain AM1_D0148 SM00829 Enoylreductase AM1_D0149 SM00382 ATPases associated with a variety of cellular activities AM1_D0157 SM00382 ATPases associated with a variety of cellular activities AM1_D0171 SM00267 diguanylate cyclase AM1_D0171 SM00448 cheY-homologous receiver domain AM1_D0171 SM00862 Transcriptional regulatory protein, C terminal AM1_D0177 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM1_D0180 SM00062 Bacterial periplasmic substrate-binding proteins AM1_D0182 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM1_D0184 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_D0186 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_D0186 SM01093 AM1_D0186 AM1_D0198 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM1_D0198 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM1_D0198 SM00091 PAS domain AM1_D0198 SM00116 Domain in cystathionine beta-synthase and other proteins. AM1_D0198 SM00387 Histidine kinase-like ATPases AM1_D0198 SM00388 His Kinase A (phosphoacceptor) domain AM1_D0198 SM00448 cheY-homologous receiver domain AM1_D0204 SM00829 Enoylreductase AM1_D0207 SM00883 Chaperonin 10 Kd subunit AM1_D0220 SM00530 Helix-turn-helix XRE-family like proteins AM1_D0229 SM00382 ATPases associated with a variety of cellular activities AM1_D0237 SM00382 ATPases associated with a variety of cellular activities AM1_D0245 SM00155 Phospholipase D. Active site motifs. AM1_D0255 SM00450 Rhodanese Homology Domain AM1_D0256 SM00849 Metallo-beta-lactamase superfamily AM1_D0258 SM00890 Domain of unknown function AM1_D0273 SM00360 RNA recognition motif AM1_D0276 SM00382 ATPases associated with a variety of cellular activities AM1_E0029 SM00530 Helix-turn-helix XRE-family like proteins AM1_E0034 SM01252 AM1_E0034 AM1_E0038 SM00912 haemagglutination activity domain AM1_E0089 SM00248 ankyrin repeats AM1_E0095 SM00358 Double-stranded RNA binding motif AM1_E0095 SM00955 AM1_E0095 AM1_E0109 SM00320 WD40 repeats AM1_E0124 SM00382 ATPases associated with a variety of cellular activities AM1_E0127 SM00358 Double-stranded RNA binding motif AM1_E0127 SM00955 AM1_E0127 AM1_E0132 SM00318 Staphylococcal nuclease homologues AM1_E0153 SM00382 ATPases associated with a variety of cellular activities AM1_E0154 SM00327 von Willebrand factor (vWF) type A domain AM1_E0175 SM00382 ATPases associated with a variety of cellular activities AM1_E0198 SM00028 Tetratricopeptide repeats AM1_F0004 SM00507 HNH nucleases AM1_F0024 SM00448 cheY-homologous receiver domain AM1_F0034 SM00419 helix_turn_helix, cAMP Regulatory protein AM1_F0037 SM00470 ParB-like nuclease domain AM1_F0038 SM00487 DEAD-like helicases superfamily AM1_F0038 SM00490 helicase superfamily c-terminal domain AM1_F0053 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_F0055 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM1_F0057 SM00487 DEAD-like helicases superfamily AM1_F0057 SM00490 helicase superfamily c-terminal domain AM1_F0061 SM00507 HNH nucleases AM1_F0072 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM1_F0084 SM00507 HNH nucleases AM1_F0088 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_F0100 SM00852 Probable molybdopterin binding domain AM1_F0113 SM00448 cheY-homologous receiver domain AM1_F0113 SM00862 Transcriptional regulatory protein, C terminal AM1_F0115 SM00358 Double-stranded RNA binding motif AM1_F0123 SM00912 haemagglutination activity domain AM1_F0126 SM00028 Tetratricopeptide repeats AM1_F0127 SM00028 Tetratricopeptide repeats AM1_F0127 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_F0152 SM00382 ATPases associated with a variety of cellular activities AM1_F0170 SM01234 AM1_F0170 AM1_F0187 SM00530 Helix-turn-helix XRE-family like proteins AM1_F0191 SM00507 HNH nucleases AM1_G0004 SM00634 Bacterial Ig-like domain (group 1) AM1_G0004 SM00912 haemagglutination activity domain AM1_G0007 SM00710 Parallel beta-helix repeats AM1_G0009 SM00028 Tetratricopeptide repeats AM1_G0010 SM00255 Toll - interleukin 1 - resistance AM1_G0011 SM00320 WD40 repeats AM1_G0011 SM00564 beta-propeller repeat AM1_G0020 SM00382 ATPases associated with a variety of cellular activities AM1_G0027 SM00358 Double-stranded RNA binding motif AM1_G0032 SM00028 Tetratricopeptide repeats AM1_G0037 SM00479 AM1_G0037 AM1_G0083 SM00342 helix_turn_helix, arabinose operon control protein AM1_G0098 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_G0111 SM00220 Serine/Threonine protein kinases, catalytic domain AM1_G0119 SM00382 ATPases associated with a variety of cellular activities AM1_G0153 SM01234 AM1_G0153 AM1_G0164 SM00320 WD40 repeats AM1_H0002 SM00382 ATPases associated with a variety of cellular activities AM1_H0021 SM00028 Tetratricopeptide repeats AM1_H0028 SM00857 Resolvase, N terminal domain AM1_H0037 SM00530 Helix-turn-helix XRE-family like proteins AM1_H0058 SM00267 diguanylate cyclase AM1_H0060 SM00320 WD40 repeats AM1_H0063 SM00028 Tetratricopeptide repeats AM1_H0064 SM00255 Toll - interleukin 1 - resistance AM1_H0065 SM00320 WD40 repeats AM1_H0065 SM00564 beta-propeller repeat AM1_H0068 SM00487 DEAD-like helicases superfamily AM1_H0068 SM00490 helicase superfamily c-terminal domain AM1_H0075 SM00382 ATPases associated with a variety of cellular activities AM1_H0119 SM00028 Tetratricopeptide repeats