locus-tag class description Clocl_0001 PF00308 Bacterial dnaA protein Clocl_0001 PF08299 Bacterial dnaA protein helix-turn-helix Clocl_0001 PF11638 DnaA N-terminal domain Clocl_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Clocl_0002 PF02767 DNA polymerase III beta subunit, central domain Clocl_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Clocl_0004 PF02463 RecF/RecN/SMC N terminal domain Clocl_0006 PF00204 DNA gyrase B Clocl_0006 PF00986 DNA gyrase B subunit, carboxyl terminus Clocl_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0006 PF01751 Toprim domain Clocl_0007 PF13614 AAA domain Clocl_0008 PF17762 HTH domain found in ParB protein Clocl_0008 PF02195 ParB-like nuclease domain Clocl_0011 PF02403 Seryl-tRNA synthetase N-terminal domain Clocl_0011 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clocl_0014 PF07690 Major Facilitator Superfamily Clocl_0015 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clocl_0015 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_0016 PF00310 Glutamine amidotransferases class-II Clocl_0016 PF04898 Glutamate synthase central domain Clocl_0016 PF01645 Conserved region in glutamate synthase Clocl_0016 PF01493 GXGXG motif Clocl_0018 PF00395 S-layer homology domain Clocl_0020 PF04294 VanW like protein Clocl_0023 PF10371 Domain of unknown function Clocl_0023 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clocl_0023 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clocl_0023 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clocl_0023 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clocl_0028 PF01636 Phosphotransferase enzyme family Clocl_0029 PF01268 Formate--tetrahydrofolate ligase Clocl_0034 PF00288 GHMP kinases N terminal domain Clocl_0034 PF08544 GHMP kinases C terminal Clocl_0035 PF07729 FCD domain Clocl_0035 PF00392 Bacterial regulatory proteins, gntR family Clocl_0036 PF00403 Heavy-metal-associated domain Clocl_0037 PF01339 CheB methylesterase Clocl_0037 PF00072 Response regulator receiver domain Clocl_0038 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_0038 PF01434 Peptidase family M41 Clocl_0038 PF17862 AAA+ lid domain Clocl_0042 PF00149 Calcineurin-like phosphoesterase Clocl_0051 PF01882 Protein of unknown function DUF58 Clocl_0052 PF07726 ATPase family associated with various cellular activities (AAA) Clocl_0052 PF17863 AAA lid domain Clocl_0053 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Clocl_0053 PF00534 Glycosyl transferases group 1 Clocl_0054 PF01471 Putative peptidoglycan binding domain Clocl_0054 PF07486 Cell Wall Hydrolase Clocl_0055 PF14620 YpeB sporulation Clocl_0057 PF00308 Bacterial dnaA protein Clocl_0057 PF08299 Bacterial dnaA protein helix-turn-helix Clocl_0057 PF11638 DnaA N-terminal domain Clocl_0061 PF01618 MotA/TolQ/ExbB proton channel family Clocl_0062 PF00691 OmpA family Clocl_0062 PF13677 Membrane MotB of proton-channel complex MotA/MotB Clocl_0063 PF07136 Protein of unknown function (DUF1385) Clocl_0064 PF17827 PrmC N-terminal domain Clocl_0064 PF05175 Methyltransferase small domain Clocl_0065 PF01594 AI-2E family transporter Clocl_0066 PF13237 4Fe-4S dicluster domain Clocl_0066 PF10531 SLBB domain Clocl_0066 PF13375 RnfC Barrel sandwich hybrid domain Clocl_0066 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clocl_0067 PF03116 NQR2, RnfD, RnfE family Clocl_0068 PF04205 FMN-binding domain Clocl_0069 PF02508 Rnf-Nqr subunit, membrane protein Clocl_0070 PF02508 Rnf-Nqr subunit, membrane protein Clocl_0071 PF04060 Putative Fe-S cluster Clocl_0073 PF01202 Shikimate kinase Clocl_0074 PF04616 Glycosyl hydrolases family 43 Clocl_0075 PF02073 Thermophilic metalloprotease (M29) Clocl_0076 PF08439 Oligopeptidase F Clocl_0076 PF01432 Peptidase family M3 Clocl_0079 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_0079 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clocl_0079 PF13247 4Fe-4S dicluster domain Clocl_0080 PF00175 Oxidoreductase NAD-binding domain Clocl_0080 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Clocl_0082 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Clocl_0082 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Clocl_0085 PF14437 MafB19-like deaminase Clocl_0087 PF01554 MatE Clocl_0088 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Clocl_0088 PF12791 Anti-sigma factor N-terminus Clocl_0093 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Clocl_0093 PF18277 AbrB C-terminal domain Clocl_0107 PF01813 ATP synthase subunit D Clocl_0108 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clocl_0108 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clocl_0109 PF16886 ATPsynthase alpha/beta subunit N-term extension Clocl_0109 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clocl_0109 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clocl_0110 PF01990 ATP synthase (F/14-kDa) subunit Clocl_0112 PF01991 ATP synthase (E/31 kDa) subunit Clocl_0113 PF00137 ATP synthase subunit C Clocl_0114 PF01496 V-type ATPase 116kDa subunit family Clocl_0117 PF00171 Aldehyde dehydrogenase family Clocl_0117 PF00465 Iron-containing alcohol dehydrogenase Clocl_0118 PF01594 AI-2E family transporter Clocl_0120 PF01842 ACT domain Clocl_0120 PF00800 Prephenate dehydratase Clocl_0120 PF01817 Chorismate mutase type II Clocl_0122 PF01368 DHH family Clocl_0122 PF02272 DHHA1 domain Clocl_0123 PF03948 Ribosomal protein L9, C-terminal domain Clocl_0123 PF01281 Ribosomal protein L9, N-terminal domain Clocl_0124 PF03796 DnaB-like helicase C terminal domain Clocl_0124 PF00772 DnaB-like helicase N terminal domain Clocl_0125 PF11734 TilS substrate C-terminal domain Clocl_0125 PF01171 PP-loop family Clocl_0126 PF00156 Phosphoribosyl transferase domain Clocl_0127 PF01434 Peptidase family M41 Clocl_0127 PF06480 FtsH Extracellular Clocl_0127 PF17862 AAA+ lid domain Clocl_0127 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_0130 PF00438 S-adenosylmethionine synthetase, N-terminal domain Clocl_0130 PF02773 S-adenosylmethionine synthetase, C-terminal domain Clocl_0130 PF02772 S-adenosylmethionine synthetase, central domain Clocl_0134 PF14490 Helix-hairpin-helix containing domain Clocl_0134 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Clocl_0134 PF13538 UvrD-like helicase C-terminal domain Clocl_0137 PF12169 DNA polymerase III subunits gamma and tau domain III Clocl_0138 PF02575 YbaB/EbfC DNA-binding family Clocl_0139 PF02132 RecR protein Clocl_0139 PF13662 Toprim domain Clocl_0142 PF13847 Methyltransferase domain Clocl_0149 PF08003 Protein of unknown function (DUF1698) Clocl_0154 PF01022 Bacterial regulatory protein, arsR family Clocl_0155 PF01758 Sodium Bile acid symporter family Clocl_0156 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clocl_0165 PF10609 NUBPL iron-transfer P-loop NTPase Clocl_0167 PF10609 NUBPL iron-transfer P-loop NTPase Clocl_0170 PF01475 Ferric uptake regulator family Clocl_0171 PF02001 Protein of unknown function DUF134 Clocl_0181 PF00990 Diguanylate cyclase, GGDEF domain Clocl_0184 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_0189 PF02384 N-6 DNA Methylase Clocl_0190 PF01420 Type I restriction modification DNA specificity domain Clocl_0191 PF18766 SWI2/SNF2 ATPase Clocl_0191 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Clocl_0191 PF11867 Domain of unknown function (DUF3387) Clocl_0192 PF03747 ADP-ribosylglycohydrolase Clocl_0197 PF17757 UvrB interaction domain Clocl_0197 PF12344 Ultra-violet resistance protein B Clocl_0197 PF02151 UvrB/uvrC motif Clocl_0197 PF04851 Type III restriction enzyme, res subunit Clocl_0197 PF00271 Helicase conserved C-terminal domain Clocl_0203 PF02899 Phage integrase, N-terminal SAM-like domain Clocl_0203 PF00589 Phage integrase family Clocl_0209 PF08722 TnsA endonuclease N terminal Clocl_0209 PF08721 TnsA endonuclease C terminal Clocl_0210 PF00665 Integrase core domain Clocl_0211 PF11426 Tn7 transposition regulator TnsC Clocl_0211 PF13401 AAA domain Clocl_0227 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clocl_0228 PF01022 Bacterial regulatory protein, arsR family Clocl_0234 PF08003 Protein of unknown function (DUF1698) Clocl_0247 PF00990 Diguanylate cyclase, GGDEF domain Clocl_0258 PF03747 ADP-ribosylglycohydrolase Clocl_0263 PF01381 Helix-turn-helix Clocl_0268 PF00589 Phage integrase family Clocl_0268 PF02899 Phage integrase, N-terminal SAM-like domain Clocl_0276 PF08722 TnsA endonuclease N terminal Clocl_0276 PF08721 TnsA endonuclease C terminal Clocl_0277 PF00665 Integrase core domain Clocl_0278 PF11426 Tn7 transposition regulator TnsC Clocl_0278 PF13401 AAA domain Clocl_0280 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Clocl_0280 PF17191 RecG wedge domain Clocl_0280 PF00270 DEAD/DEAH box helicase Clocl_0282 PF00395 S-layer homology domain Clocl_0282 PF00331 Glycosyl hydrolase family 10 Clocl_0282 PF02018 Carbohydrate binding domain Clocl_0282 PF06452 Carbohydrate family 9 binding domain-like Clocl_0285 PF03462 PCRF domain Clocl_0285 PF00472 RF-1 domain Clocl_0286 PF02535 ZIP Zinc transporter Clocl_0287 PF01300 Telomere recombination Clocl_0287 PF03481 Putative GTP-binding controlling metal-binding Clocl_0288 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clocl_0289 PF02502 Ribose/Galactose Isomerase Clocl_0291 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clocl_0292 PF00953 Glycosyl transferase family 4 Clocl_0293 PF02350 UDP-N-acetylglucosamine 2-epimerase Clocl_0295 PF00119 ATP synthase A chain Clocl_0296 PF00137 ATP synthase subunit C Clocl_0297 PF00430 ATP synthase B/B' CF(0) Clocl_0298 PF00213 ATP synthase delta (OSCP) subunit Clocl_0299 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clocl_0299 PF00306 ATP synthase alpha/beta chain, C terminal domain Clocl_0299 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clocl_0300 PF00231 ATP synthase Clocl_0301 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clocl_0301 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clocl_0302 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Clocl_0302 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Clocl_0305 PF00395 S-layer homology domain Clocl_0305 PF00963 Cohesin domain Clocl_0307 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clocl_0308 PF08486 Stage II sporulation protein Clocl_0313 PF12116 Stage III sporulation protein D Clocl_0315 PF00460 Flagella basal body rod protein Clocl_0315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clocl_0316 PF00460 Flagella basal body rod protein Clocl_0316 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clocl_0318 PF07977 FabA-like domain Clocl_0319 PF01225 Mur ligase family, catalytic domain Clocl_0319 PF02875 Mur ligase family, glutamate ligase domain Clocl_0319 PF08245 Mur ligase middle domain Clocl_0320 PF00156 Phosphoribosyl transferase domain Clocl_0320 PF09182 Bacterial purine repressor, N-terminal Clocl_0321 PF04026 SpoVG Clocl_0322 PF00132 Bacterial transferase hexapeptide (six repeats) Clocl_0322 PF14602 Hexapeptide repeat of succinyl-transferase Clocl_0322 PF00483 Nucleotidyl transferase Clocl_0323 PF14572 Phosphoribosyl synthetase-associated domain Clocl_0323 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Clocl_0324 PF01195 Peptidyl-tRNA hydrolase Clocl_0325 PF02559 CarD-like/TRCF domain Clocl_0325 PF00270 DEAD/DEAH box helicase Clocl_0325 PF00271 Helicase conserved C-terminal domain Clocl_0325 PF03461 TRCF domain Clocl_0325 PF17757 UvrB interaction domain Clocl_0327 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Clocl_0327 PF15714 Stage V sporulation protein T C-terminal, transcription factor Clocl_0328 PF01476 LysM domain Clocl_0328 PF03734 L,D-transpeptidase catalytic domain Clocl_0329 PF03819 MazG nucleotide pyrophosphohydrolase domain Clocl_0330 PF00216 Bacterial DNA-binding protein Clocl_0331 PF01479 S4 domain Clocl_0335 PF00575 S1 RNA binding domain Clocl_0338 PF01797 Transposase IS200 like Clocl_0340 PF02386 Cation transport protein Clocl_0341 PF02254 TrkA-N domain Clocl_0341 PF02080 TrkA-C domain Clocl_0342 PF13936 Helix-turn-helix domain Clocl_0343 PF00872 Transposase, Mutator family Clocl_0344 PF01527 Transposase Clocl_0345 PF05717 IS66 Orf2 like protein Clocl_0350 PF00657 GDSL-like Lipase/Acylhydrolase Clocl_0350 PF17996 Carbohydrate esterase 2 N-terminal Clocl_0350 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_0350 PF00404 Dockerin type I domain Clocl_0352 PF00583 Acetyltransferase (GNAT) family Clocl_0353 PF00665 Integrase core domain Clocl_0354 PF01695 IstB-like ATP binding protein Clocl_0356 PF02687 FtsX-like permease family Clocl_0357 PF00005 ABC transporter Clocl_0358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0359 PF00072 Response regulator receiver domain Clocl_0359 PF00486 Transcriptional regulatory protein, C terminal Clocl_0360 PF00005 ABC transporter Clocl_0360 PF00664 ABC transporter transmembrane region Clocl_0361 PF00005 ABC transporter Clocl_0361 PF00664 ABC transporter transmembrane region Clocl_0362 PF13190 PDGLE domain Clocl_0362 PF01891 Cobalt uptake substrate-specific transmembrane region Clocl_0363 PF02361 Cobalt transport protein Clocl_0364 PF00005 ABC transporter Clocl_0366 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Clocl_0367 PF13419 Haloacid dehalogenase-like hydrolase Clocl_0368 PF03109 ABC1 family Clocl_0369 PF00690 Cation transporter/ATPase, N-terminus Clocl_0369 PF00689 Cation transporting ATPase, C-terminus Clocl_0375 PF01556 DnaJ C terminal domain Clocl_0375 PF00226 DnaJ domain Clocl_0376 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_0376 PF17871 AAA lid domain Clocl_0376 PF02861 Clp amino terminal domain, pathogenicity island component Clocl_0376 PF07724 AAA domain (Cdc48 subfamily) Clocl_0376 PF10431 C-terminal, D2-small domain, of ClpB protein Clocl_0377 PF01555 DNA methylase Clocl_0378 PF04015 Domain of unknown function (DUF362) Clocl_0382 PF07228 Stage II sporulation protein E (SpoIIE) Clocl_0386 PF02743 Cache domain Clocl_0386 PF00672 HAMP domain Clocl_0386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0386 PF06580 Histidine kinase Clocl_0387 PF12833 Helix-turn-helix domain Clocl_0387 PF00072 Response regulator receiver domain Clocl_0391 PF01207 Dihydrouridine synthase (Dus) Clocl_0393 PF03061 Thioesterase superfamily Clocl_0394 PF01476 LysM domain Clocl_0394 PF00877 NlpC/P60 family Clocl_0395 PF14667 Polysaccharide biosynthesis C-terminal domain Clocl_0395 PF01943 Polysaccharide biosynthesis protein Clocl_0396 PF00011 Hsp20/alpha crystallin family Clocl_0398 PF01040 UbiA prenyltransferase family Clocl_0400 PF00132 Bacterial transferase hexapeptide (six repeats) Clocl_0401 PF00862 Sucrose synthase Clocl_0401 PF00534 Glycosyl transferases group 1 Clocl_0405 PF03853 YjeF-related protein N-terminus Clocl_0405 PF01256 Carbohydrate kinase Clocl_0406 PF00842 Alanine racemase, C-terminal domain Clocl_0406 PF01168 Alanine racemase, N-terminal domain Clocl_0407 PF01402 Ribbon-helix-helix protein, copG family Clocl_0408 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Clocl_0411 PF03808 Glycosyl transferase WecB/TagA/CpsF family Clocl_0413 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Clocl_0413 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Clocl_0414 PF00456 Transketolase, thiamine diphosphate binding domain Clocl_0415 PF02779 Transketolase, pyrimidine binding domain Clocl_0415 PF02780 Transketolase, C-terminal domain Clocl_0416 PF00331 Glycosyl hydrolase family 10 Clocl_0416 PF00395 S-layer homology domain Clocl_0416 PF06452 Carbohydrate family 9 binding domain-like Clocl_0416 PF02018 Carbohydrate binding domain Clocl_0417 PF06452 Carbohydrate family 9 binding domain-like Clocl_0417 PF02018 Carbohydrate binding domain Clocl_0417 PF00331 Glycosyl hydrolase family 10 Clocl_0417 PF00395 S-layer homology domain Clocl_0418 PF00331 Glycosyl hydrolase family 10 Clocl_0418 PF02018 Carbohydrate binding domain Clocl_0418 PF06452 Carbohydrate family 9 binding domain-like Clocl_0418 PF00395 S-layer homology domain Clocl_0419 PF00331 Glycosyl hydrolase family 10 Clocl_0419 PF06452 Carbohydrate family 9 binding domain-like Clocl_0419 PF00395 S-layer homology domain Clocl_0419 PF02018 Carbohydrate binding domain Clocl_0421 PF00437 Type II/IV secretion system protein Clocl_0436 PF00069 Protein kinase domain Clocl_0436 PF03793 PASTA domain Clocl_0441 PF00005 ABC transporter Clocl_0444 PF17863 AAA lid domain Clocl_0444 PF07726 ATPase family associated with various cellular activities (AAA) Clocl_0446 PF13519 von Willebrand factor type A domain Clocl_0446 PF07584 Aerotolerance regulator N-terminal Clocl_0449 PF00872 Transposase, Mutator family Clocl_0453 PF00072 Response regulator receiver domain Clocl_0453 PF00486 Transcriptional regulatory protein, C terminal Clocl_0454 PF13426 PAS domain Clocl_0454 PF00672 HAMP domain Clocl_0454 PF00512 His Kinase A (phospho-acceptor) domain Clocl_0454 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0456 PF00005 ABC transporter Clocl_0463 PF00356 Bacterial regulatory proteins, lacI family Clocl_0464 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Clocl_0464 PF06165 Glycosyltransferase family 36 Clocl_0465 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Clocl_0465 PF06165 Glycosyltransferase family 36 Clocl_0467 PF00759 Glycosyl hydrolase family 9 Clocl_0467 PF00942 Cellulose binding domain Clocl_0467 PF00404 Dockerin type I domain Clocl_0469 PF00072 Response regulator receiver domain Clocl_0469 PF00486 Transcriptional regulatory protein, C terminal Clocl_0470 PF16736 Single Cache-like Clocl_0470 PF00989 PAS fold Clocl_0470 PF00512 His Kinase A (phospho-acceptor) domain Clocl_0470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0472 PF13361 UvrD-like helicase C-terminal domain Clocl_0472 PF00580 UvrD/REP helicase N-terminal domain Clocl_0473 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Clocl_0473 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Clocl_0475 PF00356 Bacterial regulatory proteins, lacI family Clocl_0476 PF13673 Acetyltransferase (GNAT) domain Clocl_0477 PF12161 HsdM N-terminal domain Clocl_0477 PF02384 N-6 DNA Methylase Clocl_0484 PF00872 Transposase, Mutator family Clocl_0489 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Clocl_0489 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Clocl_0490 PF00202 Aminotransferase class-III Clocl_0492 PF00696 Amino acid kinase family Clocl_0493 PF01118 Semialdehyde dehydrogenase, NAD binding domain Clocl_0493 PF02774 Semialdehyde dehydrogenase, dimerisation domain Clocl_0494 PF00005 ABC transporter Clocl_0494 PF17912 MalK OB fold domain Clocl_0494 PF03459 TOBE domain Clocl_0495 PF13556 PucR C-terminal helix-turn-helix domain Clocl_0495 PF17853 GGDEF-like domain Clocl_0495 PF07905 Purine catabolism regulatory protein-like family Clocl_0496 PF00005 ABC transporter Clocl_0497 PF02687 FtsX-like permease family Clocl_0497 PF18075 FtsX extracellular domain Clocl_0498 PF01551 Peptidase family M23 Clocl_0498 PF04225 Opacity-associated protein A LysM-like domain Clocl_0499 PF03572 Peptidase family S41 Clocl_0499 PF01471 Putative peptidoglycan binding domain Clocl_0499 PF17820 PDZ domain Clocl_0501 PF13649 Methyltransferase domain Clocl_0502 PF00313 'Cold-shock' DNA-binding domain Clocl_0503 PF01430 Hsp33 protein Clocl_0509 PF13936 Helix-turn-helix domain Clocl_0514 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_0515 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_0516 PF17850 CysA C-terminal regulatory domain Clocl_0516 PF00005 ABC transporter Clocl_0516 PF12857 TOBE-like domain Clocl_0520 PF03063 Prismane/CO dehydrogenase family Clocl_0522 PF00072 Response regulator receiver domain Clocl_0522 PF00486 Transcriptional regulatory protein, C terminal Clocl_0524 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clocl_0525 PF05384 Sensor protein DegS Clocl_0525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0525 PF07730 Histidine kinase Clocl_0527 PF01520 N-acetylmuramoyl-L-alanine amidase Clocl_0528 PF01476 LysM domain Clocl_0528 PF00877 NlpC/P60 family Clocl_0528 PF08239 Bacterial SH3 domain Clocl_0533 PF05257 CHAP domain Clocl_0533 PF01476 LysM domain Clocl_0534 PF02629 CoA binding domain Clocl_0534 PF06971 Putative DNA-binding protein N-terminus Clocl_0535 PF12848 ABC transporter Clocl_0535 PF16326 ABC transporter C-terminal domain Clocl_0535 PF00005 ABC transporter Clocl_0539 PF01842 ACT domain Clocl_0539 PF02153 Prephenate dehydrogenase Clocl_0540 PF18152 DAHP synthase ferredoxin-like domain Clocl_0540 PF00793 DAHP synthetase I family Clocl_0541 PF00679 Elongation factor G C-terminus Clocl_0541 PF14492 Elongation Factor G, domain II Clocl_0541 PF03764 Elongation factor G, domain IV Clocl_0541 PF00009 Elongation factor Tu GTP binding domain Clocl_0541 PF03144 Elongation factor Tu domain 2 Clocl_0544 PF05848 CtsR N-terminal HTH domain Clocl_0544 PF17727 CtsR C-terminal dimerization domain Clocl_0545 PF02151 UvrB/uvrC motif Clocl_0546 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Clocl_0547 PF02861 Clp amino terminal domain, pathogenicity island component Clocl_0547 PF17871 AAA lid domain Clocl_0547 PF10431 C-terminal, D2-small domain, of ClpB protein Clocl_0547 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_0547 PF07724 AAA domain (Cdc48 subfamily) Clocl_0554 PF11992 Domain of unknown function (DUF3488) Clocl_0554 PF13559 Domain of unknown function (DUF4129) Clocl_0554 PF01841 Transglutaminase-like superfamily Clocl_0556 PF07726 ATPase family associated with various cellular activities (AAA) Clocl_0556 PF17863 AAA lid domain Clocl_0559 PF13936 Helix-turn-helix domain Clocl_0560 PF00072 Response regulator receiver domain Clocl_0560 PF09308 LuxQ, periplasmic Clocl_0560 PF00512 His Kinase A (phospho-acceptor) domain Clocl_0560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0564 PF18073 Rubredoxin metal binding domain Clocl_0565 PF10635 DisA bacterial checkpoint controller linker region Clocl_0565 PF02457 DisA bacterial checkpoint controller nucleotide-binding Clocl_0567 PF02559 CarD-like/TRCF domain Clocl_0568 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Clocl_0569 PF00005 ABC transporter Clocl_0570 PF12679 ABC-2 family transporter protein Clocl_0571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0571 PF00512 His Kinase A (phospho-acceptor) domain Clocl_0572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0572 PF00512 His Kinase A (phospho-acceptor) domain Clocl_0572 PF00989 PAS fold Clocl_0572 PF13188 PAS domain Clocl_0572 PF13426 PAS domain Clocl_0573 PF02542 YgbB family Clocl_0574 PF00188 Cysteine-rich secretory protein family Clocl_0575 PF01554 MatE Clocl_0579 PF00144 Beta-lactamase Clocl_0580 PF00550 Phosphopantetheine attachment site Clocl_0580 PF00501 AMP-binding enzyme Clocl_0580 PF13193 AMP-binding enzyme C-terminal domain Clocl_0580 PF07993 Male sterility protein Clocl_0580 PF00668 Condensation domain Clocl_0581 PF00550 Phosphopantetheine attachment site Clocl_0581 PF00501 AMP-binding enzyme Clocl_0581 PF13193 AMP-binding enzyme C-terminal domain Clocl_0581 PF00668 Condensation domain Clocl_0582 PF00665 Integrase core domain Clocl_0584 PF00849 RNA pseudouridylate synthase Clocl_0584 PF01479 S4 domain Clocl_0585 PF00483 Nucleotidyl transferase Clocl_0586 PF08291 Peptidase M15 Clocl_0586 PF01471 Putative peptidoglycan binding domain Clocl_0588 PF01042 Endoribonuclease L-PSP Clocl_0589 PF18267 Rubredoxin NAD+ reductase C-terminal domain Clocl_0589 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_0589 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Clocl_0589 PF04324 BFD-like [2Fe-2S] binding domain Clocl_0590 PF08241 Methyltransferase domain Clocl_0591 PF03851 UV-endonuclease UvdE Clocl_0594 PF00294 pfkB family carbohydrate kinase Clocl_0595 PF00072 Response regulator receiver domain Clocl_0595 PF00990 Diguanylate cyclase, GGDEF domain Clocl_0596 PF17674 HHH domain Clocl_0596 PF16921 Tex protein YqgF-like domain Clocl_0596 PF00575 S1 RNA binding domain Clocl_0596 PF09371 Tex-like protein N-terminal domain Clocl_0598 PF01471 Putative peptidoglycan binding domain Clocl_0598 PF07486 Cell Wall Hydrolase Clocl_0603 PF02683 Cytochrome C biogenesis protein transmembrane region Clocl_0604 PF00578 AhpC/TSA family Clocl_0605 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_0606 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_0608 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_0608 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Clocl_0609 PF01022 Bacterial regulatory protein, arsR family Clocl_0610 PF01791 DeoC/LacD family aldolase Clocl_0612 PF04542 Sigma-70 region 2 Clocl_0612 PF08281 Sigma-70, region 4 Clocl_0618 PF00963 Cohesin domain Clocl_0618 PF00395 S-layer homology domain Clocl_0619 PF05872 Bacterial protein of unknown function (DUF853) Clocl_0620 PF04199 Putative cyclase Clocl_0623 PF01820 D-ala D-ala ligase N-terminus Clocl_0623 PF07478 D-ala D-ala ligase C-terminus Clocl_0624 PF01177 Asp/Glu/Hydantoin racemase Clocl_0626 PF03485 Arginyl tRNA synthetase N terminal domain Clocl_0626 PF00750 tRNA synthetases class I (R) Clocl_0626 PF05746 DALR anticodon binding domain Clocl_0628 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clocl_0628 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clocl_0628 PF10371 Domain of unknown function Clocl_0628 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clocl_0628 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clocl_0630 PF03424 Carbohydrate binding domain (family 17/28) Clocl_0630 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_0630 PF00395 S-layer homology domain Clocl_0631 PF13180 PDZ domain Clocl_0631 PF03572 Peptidase family S41 Clocl_0634 PF06418 CTP synthase N-terminus Clocl_0634 PF00117 Glutamine amidotransferase class-I Clocl_0635 PF09551 Stage II sporulation protein R (spore_II_R) Clocl_0636 PF02308 MgtC family Clocl_0637 PF01276 Orn/Lys/Arg decarboxylase, major domain Clocl_0637 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Clocl_0638 PF00690 Cation transporter/ATPase, N-terminus Clocl_0638 PF00689 Cation transporting ATPase, C-terminus Clocl_0639 PF00005 ABC transporter Clocl_0646 PF00920 Dehydratase family Clocl_0647 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clocl_0647 PF00205 Thiamine pyrophosphate enzyme, central domain Clocl_0647 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Clocl_0648 PF00471 Ribosomal protein L33 Clocl_0649 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Clocl_0650 PF00467 KOW motif Clocl_0650 PF02357 Transcription termination factor nusG Clocl_0651 PF00298 Ribosomal protein L11, RNA binding domain Clocl_0651 PF03946 Ribosomal protein L11, N-terminal domain Clocl_0652 PF00687 Ribosomal protein L1p/L10e family Clocl_0653 PF00466 Ribosomal protein L10 Clocl_0654 PF00542 Ribosomal protein L7/L12 C-terminal domain Clocl_0654 PF16320 Ribosomal protein L7/L12 dimerisation domain Clocl_0655 PF04560 RNA polymerase Rpb2, domain 7 Clocl_0655 PF00562 RNA polymerase Rpb2, domain 6 Clocl_0655 PF04563 RNA polymerase beta subunit Clocl_0655 PF04565 RNA polymerase Rpb2, domain 3 Clocl_0655 PF04561 RNA polymerase Rpb2, domain 2 Clocl_0655 PF10385 RNA polymerase beta subunit external 1 domain Clocl_0656 PF04997 RNA polymerase Rpb1, domain 1 Clocl_0656 PF04983 RNA polymerase Rpb1, domain 3 Clocl_0656 PF05000 RNA polymerase Rpb1, domain 4 Clocl_0656 PF04998 RNA polymerase Rpb1, domain 5 Clocl_0656 PF00623 RNA polymerase Rpb1, domain 2 Clocl_0657 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Clocl_0658 PF00164 Ribosomal protein S12/S23 Clocl_0659 PF00177 Ribosomal protein S7p/S5e Clocl_0660 PF03144 Elongation factor Tu domain 2 Clocl_0660 PF00679 Elongation factor G C-terminus Clocl_0660 PF03764 Elongation factor G, domain IV Clocl_0660 PF00009 Elongation factor Tu GTP binding domain Clocl_0660 PF14492 Elongation Factor G, domain II Clocl_0661 PF03144 Elongation factor Tu domain 2 Clocl_0661 PF03143 Elongation factor Tu C-terminal domain Clocl_0661 PF00009 Elongation factor Tu GTP binding domain Clocl_0662 PF04542 Sigma-70 region 2 Clocl_0662 PF08281 Sigma-70, region 4 Clocl_0665 PF04294 VanW like protein Clocl_0666 PF00381 PTS HPr component phosphorylation site Clocl_0667 PF05524 PEP-utilising enzyme, N-terminal Clocl_0667 PF00391 PEP-utilising enzyme, mobile domain Clocl_0667 PF02896 PEP-utilising enzyme, TIM barrel domain Clocl_0668 PF01541 GIY-YIG catalytic domain Clocl_0668 PF02151 UvrB/uvrC motif Clocl_0668 PF08459 UvrC Helix-hairpin-helix N-terminal Clocl_0670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Clocl_0670 PF05698 Bacterial trigger factor protein (TF) C-terminus Clocl_0670 PF05697 Bacterial trigger factor protein (TF) Clocl_0671 PF00574 Clp protease Clocl_0672 PF07724 AAA domain (Cdc48 subfamily) Clocl_0672 PF10431 C-terminal, D2-small domain, of ClpB protein Clocl_0672 PF06689 ClpX C4-type zinc finger Clocl_0674 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_0674 PF05362 Lon protease (S16) C-terminal proteolytic domain Clocl_0675 PF00814 Glycoprotease family Clocl_0676 PF06463 Molybdenum Cofactor Synthesis C Clocl_0676 PF04055 Radical SAM superfamily Clocl_0677 PF01464 Transglycosylase SLT domain Clocl_0680 PF02811 PHP domain Clocl_0682 PF01668 SmpB protein Clocl_0688 PF02371 Transposase IS116/IS110/IS902 family Clocl_0688 PF01548 Transposase Clocl_0698 PF13443 Cro/C1-type HTH DNA-binding domain Clocl_0713 PF00684 DnaJ central domain Clocl_0713 PF01556 DnaJ C terminal domain Clocl_0713 PF00226 DnaJ domain Clocl_0714 PF00872 Transposase, Mutator family Clocl_0720 PF03477 ATP cone domain Clocl_0720 PF13597 Anaerobic ribonucleoside-triphosphate reductase Clocl_0721 PF04055 Radical SAM superfamily Clocl_0722 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clocl_0723 PF05384 Sensor protein DegS Clocl_0723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0723 PF07730 Histidine kinase Clocl_0724 PF00196 Bacterial regulatory proteins, luxR family Clocl_0724 PF00072 Response regulator receiver domain Clocl_0727 PF04229 GrpB protein Clocl_0733 PF00561 alpha/beta hydrolase fold Clocl_0734 PF06445 GyrI-like small molecule binding domain Clocl_0734 PF12833 Helix-turn-helix domain Clocl_0742 PF05175 Methyltransferase small domain Clocl_0743 PF00149 Calcineurin-like phosphoesterase Clocl_0752 PF04973 Nicotinamide mononucleotide transporter Clocl_0753 PF13521 AAA domain Clocl_0753 PF01381 Helix-turn-helix Clocl_0755 PF05067 Manganese containing catalase Clocl_0758 PF06968 Biotin and Thiamin Synthesis associated domain Clocl_0758 PF04055 Radical SAM superfamily Clocl_0759 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Clocl_0761 PF01613 Flavin reductase like domain Clocl_0761 PF00753 Metallo-beta-lactamase superfamily Clocl_0762 PF00756 Putative esterase Clocl_0763 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_0764 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_0766 PF04647 Accessory gene regulator B Clocl_0769 PF00005 ABC transporter Clocl_0772 PF00072 Response regulator receiver domain Clocl_0772 PF00486 Transcriptional regulatory protein, C terminal Clocl_0773 PF00512 His Kinase A (phospho-acceptor) domain Clocl_0773 PF13426 PAS domain Clocl_0773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_0773 PF00672 HAMP domain Clocl_0776 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clocl_0777 PF13187 4Fe-4S dicluster domain Clocl_0777 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Clocl_0777 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Clocl_0779 PF01208 Uroporphyrinogen decarboxylase (URO-D) Clocl_0780 PF02310 B12 binding domain Clocl_0780 PF02607 B12 binding domain Clocl_0781 PF12833 Helix-turn-helix domain Clocl_0781 PF02311 AraC-like ligand binding domain Clocl_0782 PF02492 CobW/HypB/UreG, nucleotide-binding domain Clocl_0782 PF07683 Cobalamin synthesis protein cobW C-terminal domain Clocl_0785 PF02277 Phosphoribosyltransferase Clocl_0787 PF00356 Bacterial regulatory proteins, lacI family Clocl_0788 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Clocl_0788 PF00294 pfkB family carbohydrate kinase Clocl_0790 PF13407 Periplasmic binding protein domain Clocl_0791 PF02653 Branched-chain amino acid transport system / permease component Clocl_0792 PF00005 ABC transporter Clocl_0793 PF05025 RbsD / FucU transport protein family Clocl_0797 PF01139 tRNA-splicing ligase RtcB Clocl_0798 PF01026 TatD related DNase Clocl_0799 PF00753 Metallo-beta-lactamase superfamily Clocl_0801 PF04607 Region found in RelA / SpoT proteins Clocl_0802 PF13936 Helix-turn-helix domain Clocl_0803 PF00664 ABC transporter transmembrane region Clocl_0803 PF00005 ABC transporter Clocl_0804 PF00005 ABC transporter Clocl_0804 PF00664 ABC transporter transmembrane region Clocl_0806 PF03063 Prismane/CO dehydrogenase family Clocl_0808 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_0809 PF00005 ABC transporter Clocl_0821 PF02368 Bacterial Ig-like domain (group 2) Clocl_0825 PF00872 Transposase, Mutator family Clocl_0828 PF01613 Flavin reductase like domain Clocl_0843 PF01695 IstB-like ATP binding protein Clocl_0860 PF01580 FtsK/SpoIIIE family Clocl_0860 PF12538 DNA transporter Clocl_0865 PF00293 NUDIX domain Clocl_0866 PF11468 Aromatic prenyltransferase Orf2 Clocl_0867 PF00578 AhpC/TSA family Clocl_0868 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_0868 PF13192 Thioredoxin domain Clocl_0871 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clocl_0872 PF00005 ABC transporter Clocl_0872 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clocl_0873 PF00005 ABC transporter Clocl_0873 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clocl_0874 PF12911 N-terminal TM domain of oligopeptide transport permease C Clocl_0874 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_0875 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_0877 PF00578 AhpC/TSA family Clocl_0891 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_0891 PF01348 Type II intron maturase Clocl_0895 PF05717 IS66 Orf2 like protein Clocl_0896 PF01527 Transposase Clocl_0901 PF02156 Glycosyl hydrolase family 26 Clocl_0905 PF01593 Flavin containing amine oxidoreductase Clocl_0906 PF00404 Dockerin type I domain Clocl_0907 PF01228 Glycine radical Clocl_0907 PF02901 Pyruvate formate lyase-like Clocl_0908 PF04055 Radical SAM superfamily Clocl_0909 PF01226 Formate/nitrite transporter Clocl_0911 PF17910 FeoB cytosolic helical domain Clocl_0911 PF02421 Ferrous iron transport protein B Clocl_0911 PF07670 Nucleoside recognition Clocl_0911 PF07664 Ferrous iron transport protein B C terminus Clocl_0912 PF02535 ZIP Zinc transporter Clocl_0914 PF02915 Rubrerythrin Clocl_0917 PF03063 Prismane/CO dehydrogenase family Clocl_0919 PF01070 FMN-dependent dehydrogenase Clocl_0923 PF16990 Carbohydrate binding module (family 35) Clocl_0923 PF00703 Glycosyl hydrolases family 2 Clocl_0923 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain Clocl_0923 PF02837 Glycosyl hydrolases family 2, sugar binding domain Clocl_0924 PF13538 UvrD-like helicase C-terminal domain Clocl_0924 PF14490 Helix-hairpin-helix containing domain Clocl_0924 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Clocl_0925 PF07883 Cupin domain Clocl_0928 PF00465 Iron-containing alcohol dehydrogenase Clocl_0929 PF01232 Mannitol dehydrogenase Rossmann domain Clocl_0929 PF08125 Mannitol dehydrogenase C-terminal domain Clocl_0930 PF07477 Glycosyl hydrolase family 67 C-terminus Clocl_0930 PF07488 Glycosyl hydrolase family 67 middle domain Clocl_0930 PF03648 Glycosyl hydrolase family 67 N-terminus Clocl_0932 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_0933 PF00563 EAL domain Clocl_0933 PF00990 Diguanylate cyclase, GGDEF domain Clocl_0933 PF03707 Bacterial signalling protein N terminal repeat Clocl_0934 PF01475 Ferric uptake regulator family Clocl_0936 PF00258 Flavodoxin Clocl_0938 PF13193 AMP-binding enzyme C-terminal domain Clocl_0938 PF00501 AMP-binding enzyme Clocl_0943 PF00749 tRNA synthetases class I (E and Q), catalytic domain Clocl_0948 PF03415 Clostripain family Clocl_0951 PF00374 Nickel-dependent hydrogenase Clocl_0952 PF00753 Metallo-beta-lactamase superfamily Clocl_0952 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Clocl_0952 PF17770 Ribonuclease J C-terminal domain Clocl_0953 PF13419 Haloacid dehalogenase-like hydrolase Clocl_0956 PF00313 'Cold-shock' DNA-binding domain Clocl_0957 PF06866 Protein of unknown function (DUF1256) Clocl_0958 PF04073 Aminoacyl-tRNA editing domain Clocl_0959 PF02390 Putative methyltransferase Clocl_0965 PF03030 Inorganic H+ pyrophosphatase Clocl_0966 PF00291 Pyridoxal-phosphate dependent enzyme Clocl_0967 PF00290 Tryptophan synthase alpha chain Clocl_0969 PF01381 Helix-turn-helix Clocl_0969 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Clocl_0971 PF00571 CBS domain Clocl_0971 PF03471 Transporter associated domain Clocl_0971 PF01595 Cyclin M transmembrane N-terminal domain Clocl_0973 PF01584 CheW-like domain Clocl_0974 PF00672 HAMP domain Clocl_0974 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_0974 PF12729 Four helix bundle sensory module for signal transduction Clocl_0975 PF05190 MutS family domain IV Clocl_0975 PF01624 MutS domain I Clocl_0975 PF00488 MutS domain V Clocl_0975 PF05192 MutS domain III Clocl_0975 PF05188 MutS domain II Clocl_0976 PF00488 MutS domain V Clocl_0976 PF05190 MutS family domain IV Clocl_0976 PF05192 MutS domain III Clocl_0976 PF05188 MutS domain II Clocl_0976 PF01624 MutS domain I Clocl_0977 PF00361 Proton-conducting membrane transporter Clocl_0977 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Clocl_0977 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Clocl_0977 PF13244 Domain of unknown function (DUF4040) Clocl_0978 PF00146 NADH dehydrogenase Clocl_0979 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Clocl_0981 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Clocl_0981 PF00374 Nickel-dependent hydrogenase Clocl_0981 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Clocl_0983 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Clocl_0984 PF02492 CobW/HypB/UreG, nucleotide-binding domain Clocl_0985 PF07503 HypF finger Clocl_0985 PF01300 Telomere recombination Clocl_0985 PF17788 HypF Kae1-like domain Clocl_0985 PF00708 Acylphosphatase Clocl_0987 PF01924 Hydrogenase formation hypA family Clocl_0988 PF02769 AIR synthase related protein, C-terminal domain Clocl_0988 PF00586 AIR synthase related protein, N-terminal domain Clocl_0989 PF00293 NUDIX domain Clocl_0991 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Clocl_0991 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Clocl_0991 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Clocl_0992 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Clocl_0992 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Clocl_0996 PF00291 Pyridoxal-phosphate dependent enzyme Clocl_0997 PF01471 Putative peptidoglycan binding domain Clocl_0997 PF07486 Cell Wall Hydrolase Clocl_0998 PF01297 Zinc-uptake complex component A periplasmic Clocl_0999 PF00005 ABC transporter Clocl_1000 PF00950 ABC 3 transport family Clocl_1002 PF00005 ABC transporter Clocl_1005 PF13614 AAA domain Clocl_1008 PF02719 Polysaccharide biosynthesis protein Clocl_1011 PF02397 Bacterial sugar transferase Clocl_1012 PF00456 Transketolase, thiamine diphosphate binding domain Clocl_1013 PF02779 Transketolase, pyrimidine binding domain Clocl_1013 PF02780 Transketolase, C-terminal domain Clocl_1014 PF00535 Glycosyl transferase family 2 Clocl_1015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Clocl_1015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Clocl_1015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Clocl_1018 PF04991 LicD family Clocl_1019 PF00483 Nucleotidyl transferase Clocl_1020 PF02719 Polysaccharide biosynthesis protein Clocl_1020 PF08485 Polysaccharide biosynthesis protein C-terminal Clocl_1021 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clocl_1022 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clocl_1024 PF01501 Glycosyl transferase family 8 Clocl_1024 PF00535 Glycosyl transferase family 2 Clocl_1028 PF08264 Anticodon-binding domain of tRNA Clocl_1028 PF09334 tRNA synthetases class I (M) Clocl_1028 PF13603 Leucyl-tRNA synthetase, Domain 2 Clocl_1028 PF00133 tRNA synthetases class I (I, L, M and V) Clocl_1031 PF00356 Bacterial regulatory proteins, lacI family Clocl_1032 PF01841 Transglutaminase-like superfamily Clocl_1032 PF13559 Domain of unknown function (DUF4129) Clocl_1032 PF11992 Domain of unknown function (DUF3488) Clocl_1034 PF17863 AAA lid domain Clocl_1034 PF07726 ATPase family associated with various cellular activities (AAA) Clocl_1038 PF01381 Helix-turn-helix Clocl_1039 PF01554 MatE Clocl_1040 PF00005 ABC transporter Clocl_1041 PF09084 NMT1/THI5 like Clocl_1042 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1043 PF01910 Thiamine-binding protein Clocl_1044 PF00963 Cohesin domain Clocl_1044 PF00395 S-layer homology domain Clocl_1046 PF00171 Aldehyde dehydrogenase family Clocl_1047 PF00404 Dockerin type I domain Clocl_1047 PF17996 Carbohydrate esterase 2 N-terminal Clocl_1047 PF00657 GDSL-like Lipase/Acylhydrolase Clocl_1047 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_1048 PF00133 tRNA synthetases class I (I, L, M and V) Clocl_1048 PF08264 Anticodon-binding domain of tRNA Clocl_1049 PF03129 Anticodon binding domain Clocl_1049 PF09180 Prolyl-tRNA synthetase, C-terminal Clocl_1049 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clocl_1050 PF01928 CYTH domain Clocl_1053 PF12791 Anti-sigma factor N-terminus Clocl_1053 PF00942 Cellulose binding domain Clocl_1055 PF01270 Glycosyl hydrolases family 8 Clocl_1055 PF00404 Dockerin type I domain Clocl_1056 PF00759 Glycosyl hydrolase family 9 Clocl_1056 PF00404 Dockerin type I domain Clocl_1056 PF00942 Cellulose binding domain Clocl_1057 PF07943 Penicillin-binding protein 5, C-terminal domain Clocl_1057 PF00768 D-alanyl-D-alanine carboxypeptidase Clocl_1058 PF10417 C-terminal domain of 1-Cys peroxiredoxin Clocl_1058 PF00578 AhpC/TSA family Clocl_1059 PF00486 Transcriptional regulatory protein, C terminal Clocl_1059 PF00072 Response regulator receiver domain Clocl_1064 PF00114 Pilin (bacterial filament) Clocl_1064 PF07963 Prokaryotic N-terminal methylation motif Clocl_1066 PF02675 S-adenosylmethionine decarboxylase Clocl_1067 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Clocl_1067 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Clocl_1068 PF10672 S-adenosylmethionine-dependent methyltransferase Clocl_1068 PF02926 THUMP domain Clocl_1068 PF01170 Putative RNA methylase family UPF0020 Clocl_1069 PF01479 S4 domain Clocl_1069 PF00849 RNA pseudouridylate synthase Clocl_1071 PF00207 Alpha-2-macroglobulin family Clocl_1071 PF07703 Alpha-2-macroglobulin bait region domain Clocl_1071 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Clocl_1071 PF01835 MG2 domain Clocl_1072 PF04542 Sigma-70 region 2 Clocl_1072 PF08281 Sigma-70, region 4 Clocl_1073 PF00534 Glycosyl transferases group 1 Clocl_1073 PF08323 Starch synthase catalytic domain Clocl_1074 PF00248 Aldo/keto reductase family Clocl_1077 PF00180 Isocitrate/isopropylmalate dehydrogenase Clocl_1078 PF01416 tRNA pseudouridine synthase Clocl_1079 PF02810 SEC-C motif Clocl_1079 PF07517 SecA DEAD-like domain Clocl_1079 PF01043 SecA preprotein cross-linking domain Clocl_1079 PF07516 SecA Wing and Scaffold domain Clocl_1081 PF00884 Sulfatase Clocl_1087 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Clocl_1088 PF03590 Aspartate-ammonia ligase Clocl_1089 PF00152 tRNA synthetases class II (D, K and N) Clocl_1089 PF01336 OB-fold nucleic acid binding domain Clocl_1090 PF00391 PEP-utilising enzyme, mobile domain Clocl_1090 PF00224 Pyruvate kinase, barrel domain Clocl_1090 PF02887 Pyruvate kinase, alpha/beta domain Clocl_1091 PF03372 Endonuclease/Exonuclease/phosphatase family Clocl_1093 PF04024 PspC domain Clocl_1095 PF00989 PAS fold Clocl_1095 PF00512 His Kinase A (phospho-acceptor) domain Clocl_1095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_1095 PF00672 HAMP domain Clocl_1095 PF18698 Histidine kinase sensor domain Clocl_1096 PF00072 Response regulator receiver domain Clocl_1097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_1097 PF01584 CheW-like domain Clocl_1097 PF07194 P2 response regulator binding domain Clocl_1097 PF02895 Signal transducing histidine kinase, homodimeric domain Clocl_1097 PF01627 Hpt domain Clocl_1102 PF01584 CheW-like domain Clocl_1103 PF01960 ArgJ family Clocl_1104 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_1104 PF05362 Lon protease (S16) C-terminal proteolytic domain Clocl_1104 PF02190 ATP-dependent protease La (LON) substrate-binding domain Clocl_1109 PF05389 Negative regulator of genetic competence (MecA) Clocl_1111 PF02545 Maf-like protein Clocl_1113 PF04085 rod shape-determining protein MreC Clocl_1115 PF03717 Penicillin-binding Protein dimerisation domain Clocl_1115 PF00905 Penicillin binding protein transpeptidase domain Clocl_1116 PF03775 Septum formation inhibitor MinC, C-terminal domain Clocl_1117 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clocl_1118 PF03776 Septum formation topological specificity factor MinE Clocl_1119 PF02142 MGS-like domain Clocl_1120 PF08525 Opacity-associated protein A N-terminal motif Clocl_1120 PF01551 Peptidase family M23 Clocl_1120 PF01476 LysM domain Clocl_1121 PF02163 Peptidase family M50 Clocl_1121 PF00571 CBS domain Clocl_1122 PF00942 Cellulose binding domain Clocl_1122 PF00331 Glycosyl hydrolase family 10 Clocl_1122 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_1123 PF01894 Uncharacterised protein family UPF0047 Clocl_1124 PF01872 RibD C-terminal domain Clocl_1124 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clocl_1125 PF00677 Lumazine binding domain Clocl_1126 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Clocl_1126 PF00925 GTP cyclohydrolase II Clocl_1127 PF00885 6,7-dimethyl-8-ribityllumazine synthase Clocl_1131 PF07475 HPr Serine kinase C-terminal domain Clocl_1131 PF02603 HPr Serine kinase N terminus Clocl_1132 PF02811 PHP domain Clocl_1133 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Clocl_1133 PF01565 FAD binding domain Clocl_1134 PF03668 P-loop ATPase protein family Clocl_1135 PF01933 Uncharacterised protein family UPF0052 Clocl_1137 PF10298 WhiA N-terminal LAGLIDADG-like domain Clocl_1137 PF02650 WhiA C-terminal HTH domain Clocl_1137 PF14527 WhiA LAGLIDADG-like domain Clocl_1138 PF00381 PTS HPr component phosphorylation site Clocl_1139 PF01740 STAS domain Clocl_1140 PF13581 Histidine kinase-like ATPase domain Clocl_1141 PF04542 Sigma-70 region 2 Clocl_1141 PF04539 Sigma-70 region 3 Clocl_1141 PF04545 Sigma-70, region 4 Clocl_1142 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Clocl_1143 PF07451 Stage V sporulation protein AD (SpoVAD) Clocl_1148 PF00588 SpoU rRNA Methylase family Clocl_1149 PF07687 Peptidase dimerisation domain Clocl_1149 PF01546 Peptidase family M20/M25/M40 Clocl_1150 PF00365 Phosphofructokinase Clocl_1152 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Clocl_1152 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Clocl_1153 PF00162 Phosphoglycerate kinase Clocl_1154 PF00121 Triosephosphate isomerase Clocl_1155 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Clocl_1155 PF01676 Metalloenzyme superfamily Clocl_1183 PF00872 Transposase, Mutator family Clocl_1192 PF00942 Cellulose binding domain Clocl_1192 PF00759 Glycosyl hydrolase family 9 Clocl_1193 PF00113 Enolase, C-terminal TIM barrel domain Clocl_1193 PF03952 Enolase, N-terminal domain Clocl_1195 PF01797 Transposase IS200 like Clocl_1197 PF08206 Ribonuclease B OB domain Clocl_1197 PF17876 Cold shock domain Clocl_1197 PF00575 S1 RNA binding domain Clocl_1197 PF00773 RNB domain Clocl_1198 PF04463 Protein of unknown function (DUF523) Clocl_1200 PF04055 Radical SAM superfamily Clocl_1200 PF01938 TRAM domain Clocl_1200 PF00919 Uncharacterized protein family UPF0004 Clocl_1201 PF06135 IreB regulatory phosphoprotein Clocl_1202 PF00248 Aldo/keto reductase family Clocl_1203 PF03652 Holliday junction resolvase Clocl_1204 PF06949 Protein of unknown function (DUF1292) Clocl_1208 PF00575 S1 RNA binding domain Clocl_1208 PF10150 Ribonuclease E/G family Clocl_1209 PF00829 Ribosomal prokaryotic L21 protein Clocl_1211 PF01016 Ribosomal L27 protein Clocl_1212 PF09269 Domain of unknown function (DUF1967) Clocl_1212 PF01018 GTP1/OBG Clocl_1212 PF01926 50S ribosome-binding GTPase Clocl_1214 PF01985 CRS1 / YhbY (CRM) domain Clocl_1218 PF00884 Sulfatase Clocl_1222 PF14698 Argininosuccinate lyase C-terminal Clocl_1222 PF00206 Lyase Clocl_1223 PF00764 Arginosuccinate synthase Clocl_1224 PF02075 Crossover junction endodeoxyribonuclease RuvC Clocl_1225 PF07499 RuvA, C-terminal domain Clocl_1225 PF01330 RuvA N terminal domain Clocl_1226 PF17864 RuvB AAA lid domain Clocl_1226 PF05491 RuvB C-terminal winged helix domain Clocl_1226 PF05496 Holliday junction DNA helicase RuvB P-loop domain Clocl_1228 PF01520 N-acetylmuramoyl-L-alanine amidase Clocl_1228 PF04122 Putative cell wall binding repeat 2 Clocl_1229 PF16363 GDP-mannose 4,6 dehydratase Clocl_1231 PF01138 3' exoribonuclease family, domain 1 Clocl_1231 PF03725 3' exoribonuclease family, domain 2 Clocl_1232 PF01725 Ham1 family Clocl_1236 PF00580 UvrD/REP helicase N-terminal domain Clocl_1236 PF13361 UvrD-like helicase C-terminal domain Clocl_1237 PF00580 UvrD/REP helicase N-terminal domain Clocl_1237 PF13361 UvrD-like helicase C-terminal domain Clocl_1239 PF17768 RecJ OB domain Clocl_1239 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Clocl_1239 PF02272 DHHA1 domain Clocl_1239 PF01368 DHH family Clocl_1241 PF00069 Protein kinase domain Clocl_1241 PF03793 PASTA domain Clocl_1242 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1243 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1245 PF07516 SecA Wing and Scaffold domain Clocl_1245 PF01043 SecA preprotein cross-linking domain Clocl_1245 PF07517 SecA DEAD-like domain Clocl_1245 PF02810 SEC-C motif Clocl_1247 PF01370 NAD dependent epimerase/dehydratase family Clocl_1256 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Clocl_1257 PF02779 Transketolase, pyrimidine binding domain Clocl_1257 PF02780 Transketolase, C-terminal domain Clocl_1258 PF00456 Transketolase, thiamine diphosphate binding domain Clocl_1258 PF02779 Transketolase, pyrimidine binding domain Clocl_1258 PF02780 Transketolase, C-terminal domain Clocl_1259 PF08264 Anticodon-binding domain of tRNA Clocl_1259 PF00133 tRNA synthetases class I (I, L, M and V) Clocl_1259 PF10458 Valyl tRNA synthetase tRNA binding arm Clocl_1260 PF03861 ANTAR domain Clocl_1260 PF08376 Nitrate and nitrite sensing Clocl_1261 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Clocl_1262 PF00543 Nitrogen regulatory protein P-II Clocl_1263 PF00543 Nitrogen regulatory protein P-II Clocl_1264 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_1265 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_1266 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_1267 PF02579 Dinitrogenase iron-molybdenum cofactor Clocl_1267 PF04055 Radical SAM superfamily Clocl_1270 PF00682 HMGL-like Clocl_1271 PF00795 Carbon-nitrogen hydrolase Clocl_1271 PF02540 NAD synthase Clocl_1272 PF00872 Transposase, Mutator family Clocl_1273 PF01695 IstB-like ATP binding protein Clocl_1274 PF00665 Integrase core domain Clocl_1276 PF00005 ABC transporter Clocl_1279 PF01814 Hemerythrin HHE cation binding domain Clocl_1280 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_1281 PF04324 BFD-like [2Fe-2S] binding domain Clocl_1281 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_1283 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1287 PF06969 HemN C-terminal domain Clocl_1287 PF04055 Radical SAM superfamily Clocl_1290 PF02371 Transposase IS116/IS110/IS902 family Clocl_1290 PF01548 Transposase Clocl_1291 PF00072 Response regulator receiver domain Clocl_1291 PF04397 LytTr DNA-binding domain Clocl_1293 PF00082 Subtilase family Clocl_1298 PF03330 Lytic transglycolase Clocl_1300 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1301 PF00005 ABC transporter Clocl_1301 PF03459 TOBE domain Clocl_1302 PF00009 Elongation factor Tu GTP binding domain Clocl_1302 PF03144 Elongation factor Tu domain 2 Clocl_1302 PF16658 Class II release factor RF3, C-terminal domain Clocl_1303 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clocl_1303 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clocl_1303 PF03129 Anticodon binding domain Clocl_1303 PF02824 TGS domain Clocl_1306 PF04060 Putative Fe-S cluster Clocl_1312 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clocl_1312 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clocl_1312 PF00037 4Fe-4S binding domain Clocl_1313 PF02906 Iron only hydrogenase large subunit, C-terminal domain Clocl_1313 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Clocl_1313 PF00037 4Fe-4S binding domain Clocl_1313 PF02256 Iron hydrogenase small subunit Clocl_1314 PF00293 NUDIX domain Clocl_1315 PF00881 Nitroreductase family Clocl_1316 PF01613 Flavin reductase like domain Clocl_1317 PF12833 Helix-turn-helix domain Clocl_1318 PF00155 Aminotransferase class I and II Clocl_1319 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Clocl_1319 PF01409 tRNA synthetases class II core domain (F) Clocl_1320 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Clocl_1320 PF03483 B3/4 domain Clocl_1320 PF03484 tRNA synthetase B5 domain Clocl_1320 PF03147 Ferredoxin-fold anticodon binding domain Clocl_1320 PF01588 Putative tRNA binding domain Clocl_1322 PF00342 Phosphoglucose isomerase Clocl_1323 PF00149 Calcineurin-like phosphoesterase Clocl_1324 PF02743 Cache domain Clocl_1324 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_1324 PF00672 HAMP domain Clocl_1327 PF04041 beta-1,4-mannooligosaccharide phosphorylase Clocl_1328 PF00483 Nucleotidyl transferase Clocl_1331 PF01238 Phosphomannose isomerase type I Clocl_1332 PF01386 Ribosomal L25p family Clocl_1332 PF14693 Ribosomal protein TL5, C-terminal domain Clocl_1333 PF00106 short chain dehydrogenase Clocl_1335 PF02371 Transposase IS116/IS110/IS902 family Clocl_1335 PF01548 Transposase Clocl_1339 PF03358 NADPH-dependent FMN reductase Clocl_1346 PF00120 Glutamine synthetase, catalytic domain Clocl_1346 PF18318 Glutamine synthetase C-terminal domain Clocl_1346 PF12437 Glutamine synthetase type III N terminal Clocl_1348 PF03816 Cell envelope-related transcriptional attenuator domain Clocl_1349 PF04397 LytTr DNA-binding domain Clocl_1349 PF00072 Response regulator receiver domain Clocl_1351 PF12127 SigmaW regulon antibacterial Clocl_1352 PF01957 NfeD-like C-terminal, partner-binding Clocl_1352 PF01972 Serine dehydrogenase proteinase Clocl_1353 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Clocl_1353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_1353 PF00989 PAS fold Clocl_1353 PF17203 Single cache domain 3 Clocl_1354 PF01063 Amino-transferase class IV Clocl_1356 PF01488 Shikimate / quinate 5-dehydrogenase Clocl_1356 PF08501 Shikimate dehydrogenase substrate binding domain Clocl_1356 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Clocl_1357 PF00114 Pilin (bacterial filament) Clocl_1357 PF07963 Prokaryotic N-terminal methylation motif Clocl_1358 PF01478 Type IV leader peptidase family Clocl_1358 PF06750 Bacterial Peptidase A24 N-terminal domain Clocl_1361 PF01220 Dehydroquinase class II Clocl_1362 PF00557 Metallopeptidase family M24 Clocl_1362 PF01321 Creatinase/Prolidase N-terminal domain Clocl_1363 PF09285 Elongation factor P, C-terminal Clocl_1363 PF08207 Elongation factor P (EF-P) KOW-like domain Clocl_1363 PF01132 Elongation factor P (EF-P) OB domain Clocl_1367 PF03707 Bacterial signalling protein N terminal repeat Clocl_1367 PF00990 Diguanylate cyclase, GGDEF domain Clocl_1367 PF00563 EAL domain Clocl_1369 PF05167 Uncharacterised ACR (DUF711) Clocl_1370 PF08281 Sigma-70, region 4 Clocl_1370 PF04542 Sigma-70 region 2 Clocl_1374 PF00005 ABC transporter Clocl_1378 PF13186 Iron-sulfur cluster-binding domain Clocl_1378 PF04055 Radical SAM superfamily Clocl_1381 PF05067 Manganese containing catalase Clocl_1384 PF00795 Carbon-nitrogen hydrolase Clocl_1385 PF00312 Ribosomal protein S15 Clocl_1386 PF00575 S1 RNA binding domain Clocl_1386 PF03725 3' exoribonuclease family, domain 2 Clocl_1386 PF01138 3' exoribonuclease family, domain 1 Clocl_1386 PF00013 KH domain Clocl_1386 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Clocl_1387 PF05193 Peptidase M16 inactive domain Clocl_1387 PF00675 Insulinase (Peptidase family M16) Clocl_1388 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Clocl_1388 PF16924 Dipicolinate synthase subunit A N-terminal domain Clocl_1389 PF02441 Flavoprotein Clocl_1390 PF00437 Type II/IV secretion system protein Clocl_1390 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Clocl_1391 PF00437 Type II/IV secretion system protein Clocl_1392 PF00482 Type II secretion system (T2SS), protein F Clocl_1393 PF00114 Pilin (bacterial filament) Clocl_1393 PF07963 Prokaryotic N-terminal methylation motif Clocl_1400 PF00574 Clp protease Clocl_1402 PF09397 Ftsk gamma domain Clocl_1402 PF01580 FtsK/SpoIIIE family Clocl_1402 PF17854 FtsK alpha domain Clocl_1403 PF11842 Domain of unknown function (DUF3362) Clocl_1403 PF04055 Radical SAM superfamily Clocl_1403 PF08497 Radical SAM N-terminal Clocl_1404 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Clocl_1404 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Clocl_1406 PF01966 HD domain Clocl_1406 PF00013 KH domain Clocl_1406 PF12072 Domain of unknown function (DUF3552) Clocl_1407 PF13277 YmdB-like protein Clocl_1408 PF04232 Stage V sporulation protein S (SpoVS) Clocl_1411 PF01527 Transposase Clocl_1412 PF05717 IS66 Orf2 like protein Clocl_1413 PF03050 Transposase IS66 family Clocl_1413 PF13007 Transposase C of IS166 homeodomain Clocl_1413 PF13817 IS66 C-terminal element Clocl_1413 PF13005 zinc-finger binding domain of transposase IS66 Clocl_1416 PF01118 Semialdehyde dehydrogenase, NAD binding domain Clocl_1416 PF02774 Semialdehyde dehydrogenase, dimerisation domain Clocl_1417 PF01554 MatE Clocl_1420 PF16363 GDP-mannose 4,6 dehydratase Clocl_1421 PF05949 Bacterial protein of unknown function (DUF881) Clocl_1424 PF00483 Nucleotidyl transferase Clocl_1426 PF05949 Bacterial protein of unknown function (DUF881) Clocl_1428 PF01522 Polysaccharide deacetylase Clocl_1429 PF07873 YabP family Clocl_1431 PF02562 PhoH-like protein Clocl_1432 PF01966 HD domain Clocl_1432 PF07697 7TM-HD extracellular Clocl_1432 PF07698 7TM receptor with intracellular HD hydrolase Clocl_1433 PF02130 Uncharacterized protein family UPF0054 Clocl_1434 PF07650 KH domain Clocl_1434 PF01926 50S ribosome-binding GTPase Clocl_1436 PF11967 Recombination protein O N terminal Clocl_1436 PF02565 Recombination protein O C terminal Clocl_1439 PF00266 Aminotransferase class-V Clocl_1440 PF02926 THUMP domain Clocl_1440 PF02568 Thiamine biosynthesis protein (ThiI) Clocl_1441 PF04294 VanW like protein Clocl_1445 PF00464 Serine hydroxymethyltransferase Clocl_1446 PF11992 Domain of unknown function (DUF3488) Clocl_1446 PF13559 Domain of unknown function (DUF4129) Clocl_1446 PF01841 Transglutaminase-like superfamily Clocl_1448 PF07726 ATPase family associated with various cellular activities (AAA) Clocl_1448 PF17863 AAA lid domain Clocl_1449 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Clocl_1449 PF00056 lactate/malate dehydrogenase, NAD binding domain Clocl_1450 PF18146 Damage-inducible protein CinA KH domain Clocl_1450 PF00994 Probable molybdopterin binding domain Clocl_1450 PF02464 Competence-damaged protein Clocl_1451 PF03023 Lipid II flippase MurJ Clocl_1452 PF00154 recA bacterial DNA recombination protein Clocl_1453 PF01145 SPFH domain / Band 7 family Clocl_1454 PF01145 SPFH domain / Band 7 family Clocl_1455 PF03323 Bacillus/Clostridium GerA spore germination protein Clocl_1457 PF05504 Spore germination B3/ GerAC like, C-terminal Clocl_1461 PF00672 HAMP domain Clocl_1461 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_1461 PF18698 Histidine kinase sensor domain Clocl_1461 PF00512 His Kinase A (phospho-acceptor) domain Clocl_1461 PF00989 PAS fold Clocl_1463 PF14748 Pyrroline-5-carboxylate reductase dimerisation Clocl_1463 PF03807 NADP oxidoreductase coenzyme F420-dependent Clocl_1464 PF00075 RNase H Clocl_1465 PF00293 NUDIX domain Clocl_1466 PF01944 Stage II sporulation protein M Clocl_1467 PF02899 Phage integrase, N-terminal SAM-like domain Clocl_1467 PF00589 Phage integrase family Clocl_1468 PF01676 Metalloenzyme superfamily Clocl_1469 PF00591 Glycosyl transferase family, a/b domain Clocl_1469 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Clocl_1469 PF02885 Glycosyl transferase family, helical bundle domain Clocl_1470 PF07943 Penicillin-binding protein 5, C-terminal domain Clocl_1470 PF00768 D-alanyl-D-alanine carboxypeptidase Clocl_1474 PF07726 ATPase family associated with various cellular activities (AAA) Clocl_1474 PF17863 AAA lid domain Clocl_1478 PF13936 Helix-turn-helix domain Clocl_1480 PF00457 Glycosyl hydrolases family 11 Clocl_1480 PF03422 Carbohydrate binding module (family 6) Clocl_1481 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Clocl_1481 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Clocl_1482 PF04389 Peptidase family M28 Clocl_1483 PF02272 DHHA1 domain Clocl_1483 PF00571 CBS domain Clocl_1483 PF12627 Probable RNA and SrmB- binding site of polymerase A Clocl_1483 PF01743 Poly A polymerase head domain Clocl_1483 PF01368 DHH family Clocl_1484 PF02163 Peptidase family M50 Clocl_1485 PF00579 tRNA synthetases class I (W and Y) Clocl_1486 PF02616 Segregation and condensation protein ScpA Clocl_1487 PF04079 Segregation and condensation complex subunit ScpB Clocl_1489 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Clocl_1490 PF01479 S4 domain Clocl_1490 PF00849 RNA pseudouridylate synthase Clocl_1492 PF17284 Spermidine synthase tetramerisation domain Clocl_1493 PF00491 Arginase family Clocl_1494 PF06962 Putative rRNA methylase Clocl_1496 PF01039 Carboxyl transferase domain Clocl_1498 PF00364 Biotin-requiring enzyme Clocl_1499 PF00364 Biotin-requiring enzyme Clocl_1499 PF02436 Conserved carboxylase domain Clocl_1499 PF00682 HMGL-like Clocl_1505 PF13005 zinc-finger binding domain of transposase IS66 Clocl_1505 PF13007 Transposase C of IS166 homeodomain Clocl_1505 PF03050 Transposase IS66 family Clocl_1505 PF13817 IS66 C-terminal element Clocl_1506 PF05717 IS66 Orf2 like protein Clocl_1516 PF01527 Transposase Clocl_1517 PF05717 IS66 Orf2 like protein Clocl_1520 PF05593 RHS Repeat Clocl_1527 PF01527 Transposase Clocl_1528 PF05717 IS66 Orf2 like protein Clocl_1543 PF02018 Carbohydrate binding domain Clocl_1543 PF00331 Glycosyl hydrolase family 10 Clocl_1543 PF06452 Carbohydrate family 9 binding domain-like Clocl_1543 PF00395 S-layer homology domain Clocl_1546 PF05717 IS66 Orf2 like protein Clocl_1547 PF01527 Transposase Clocl_1548 PF02743 Cache domain Clocl_1548 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_1548 PF00672 HAMP domain Clocl_1549 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_1549 PF02203 Tar ligand binding domain homologue Clocl_1549 PF00672 HAMP domain Clocl_1557 PF00899 ThiF family Clocl_1559 PF00005 ABC transporter Clocl_1560 PF00392 Bacterial regulatory proteins, gntR family Clocl_1561 PF07556 Protein of unknown function (DUF1538) Clocl_1564 PF00942 Cellulose binding domain Clocl_1564 PF12891 Glycoside hydrolase family 44 Clocl_1565 PF01551 Peptidase family M23 Clocl_1565 PF10145 Phage-related minor tail protein Clocl_1565 PF01464 Transglycosylase SLT domain Clocl_1566 PF00759 Glycosyl hydrolase family 9 Clocl_1566 PF00942 Cellulose binding domain Clocl_1567 PF00759 Glycosyl hydrolase family 9 Clocl_1567 PF00404 Dockerin type I domain Clocl_1567 PF00942 Cellulose binding domain Clocl_1570 PF06968 Biotin and Thiamin Synthesis associated domain Clocl_1570 PF04055 Radical SAM superfamily Clocl_1571 PF02371 Transposase IS116/IS110/IS902 family Clocl_1571 PF01548 Transposase Clocl_1572 PF06968 Biotin and Thiamin Synthesis associated domain Clocl_1572 PF04055 Radical SAM superfamily Clocl_1573 PF00206 Lyase Clocl_1573 PF10415 Fumarase C C-terminus Clocl_1574 PF01926 50S ribosome-binding GTPase Clocl_1574 PF12631 MnmE helical domain Clocl_1574 PF10396 GTP-binding protein TrmE N-terminus Clocl_1575 PF00266 Aminotransferase class-V Clocl_1580 PF03611 PTS system sugar-specific permease component Clocl_1582 PF00005 ABC transporter Clocl_1583 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1586 PF00082 Subtilase family Clocl_1597 PF00665 Integrase core domain Clocl_1598 PF01695 IstB-like ATP binding protein Clocl_1604 PF05717 IS66 Orf2 like protein Clocl_1616 PF00872 Transposase, Mutator family Clocl_1619 PF05717 IS66 Orf2 like protein Clocl_1620 PF01527 Transposase Clocl_1626 PF13936 Helix-turn-helix domain Clocl_1628 PF18624 CDI immunity protein Clocl_1633 PF18624 CDI immunity protein Clocl_1639 PF01527 Transposase Clocl_1640 PF05717 IS66 Orf2 like protein Clocl_1652 PF00665 Integrase core domain Clocl_1653 PF01695 IstB-like ATP binding protein Clocl_1655 PF07055 Enoyl reductase FAD binding domain Clocl_1655 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Clocl_1655 PF12241 Trans-2-enoyl-CoA reductase catalytic region Clocl_1664 PF07501 G5 domain Clocl_1664 PF03990 G5-linked-Ubiquitin-like domain Clocl_1664 PF06725 3D domain Clocl_1665 PF02631 RecX family Clocl_1667 PF02659 Putative manganese efflux pump Clocl_1671 PF00704 Glycosyl hydrolases family 18 Clocl_1671 PF00041 Fibronectin type III domain Clocl_1676 PF08245 Mur ligase middle domain Clocl_1681 PF05343 M42 glutamyl aminopeptidase Clocl_1682 PF05343 M42 glutamyl aminopeptidase Clocl_1683 PF05343 M42 glutamyl aminopeptidase Clocl_1686 PF10996 Beta-Casp domain Clocl_1686 PF00753 Metallo-beta-lactamase superfamily Clocl_1686 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Clocl_1687 PF08241 Methyltransferase domain Clocl_1688 PF00378 Enoyl-CoA hydratase/isomerase Clocl_1692 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_1695 PF02384 N-6 DNA Methylase Clocl_1696 PF01420 Type I restriction modification DNA specificity domain Clocl_1698 PF11867 Domain of unknown function (DUF3387) Clocl_1698 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Clocl_1698 PF18766 SWI2/SNF2 ATPase Clocl_1702 PF01797 Transposase IS200 like Clocl_1703 PF00665 Integrase core domain Clocl_1704 PF00308 Bacterial dnaA protein Clocl_1704 PF08299 Bacterial dnaA protein helix-turn-helix Clocl_1704 PF11638 DnaA N-terminal domain Clocl_1706 PF12849 PBP superfamily domain Clocl_1707 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1708 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1709 PF00005 ABC transporter Clocl_1710 PF01895 PhoU domain Clocl_1711 PF00486 Transcriptional regulatory protein, C terminal Clocl_1711 PF00072 Response regulator receiver domain Clocl_1712 PF16736 Single Cache-like Clocl_1712 PF00989 PAS fold Clocl_1712 PF00512 His Kinase A (phospho-acceptor) domain Clocl_1712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_1715 PF00005 ABC transporter Clocl_1717 PF01381 Helix-turn-helix Clocl_1719 PF00501 AMP-binding enzyme Clocl_1720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clocl_1721 PF02653 Branched-chain amino acid transport system / permease component Clocl_1722 PF02653 Branched-chain amino acid transport system / permease component Clocl_1723 PF00005 ABC transporter Clocl_1724 PF04055 Radical SAM superfamily Clocl_1725 PF11230 Protein of unknown function (DUF3029) Clocl_1726 PF02608 ABC transporter substrate-binding protein PnrA-like Clocl_1727 PF01048 Phosphorylase superfamily Clocl_1732 PF10672 S-adenosylmethionine-dependent methyltransferase Clocl_1732 PF17785 PUA-like domain Clocl_1735 PF00501 AMP-binding enzyme Clocl_1735 PF14535 AMP-binding enzyme C-terminal domain Clocl_1737 PF16193 AAA C-terminal domain Clocl_1737 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_1737 PF12002 MgsA AAA+ ATPase C terminal Clocl_1740 PF01938 TRAM domain Clocl_1740 PF00919 Uncharacterized protein family UPF0004 Clocl_1740 PF04055 Radical SAM superfamily Clocl_1742 PF00488 MutS domain V Clocl_1742 PF05190 MutS family domain IV Clocl_1742 PF05192 MutS domain III Clocl_1742 PF01624 MutS domain I Clocl_1742 PF05188 MutS domain II Clocl_1743 PF01119 DNA mismatch repair protein, C-terminal domain Clocl_1743 PF08676 MutL C terminal dimerisation domain Clocl_1745 PF17209 Hfq protein Clocl_1746 PF01726 LexA DNA binding domain Clocl_1746 PF00717 Peptidase S24-like Clocl_1747 PF05257 CHAP domain Clocl_1747 PF01476 LysM domain Clocl_1752 PF04542 Sigma-70 region 2 Clocl_1752 PF08281 Sigma-70, region 4 Clocl_1758 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Clocl_1759 PF00448 SRP54-type protein, GTPase domain Clocl_1759 PF02881 SRP54-type protein, helical bundle domain Clocl_1759 PF02978 Signal peptide binding domain Clocl_1760 PF00886 Ribosomal protein S16 Clocl_1762 PF01782 RimM N-terminal domain Clocl_1762 PF05239 PRC-barrel domain Clocl_1763 PF01746 tRNA (Guanine-1)-methyltransferase Clocl_1766 PF02417 Chromate transporter Clocl_1769 PF01554 MatE Clocl_1771 PF00977 Histidine biosynthesis protein Clocl_1776 PF00800 Prephenate dehydratase Clocl_1776 PF01817 Chorismate mutase type II Clocl_1776 PF01842 ACT domain Clocl_1778 PF03423 Carbohydrate binding domain (family 25) Clocl_1778 PF03065 Glycosyl hydrolase family 57 Clocl_1778 PF00041 Fibronectin type III domain Clocl_1779 PF17202 Single cache domain 3 Clocl_1779 PF00672 HAMP domain Clocl_1779 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_1780 PF04294 VanW like protein Clocl_1783 PF01488 Shikimate / quinate 5-dehydrogenase Clocl_1783 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Clocl_1784 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Clocl_1784 PF01488 Shikimate / quinate 5-dehydrogenase Clocl_1785 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Clocl_1785 PF03900 Porphobilinogen deaminase, C-terminal domain Clocl_1786 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clocl_1786 PF02602 Uroporphyrinogen-III synthase HemD Clocl_1787 PF00490 Delta-aminolevulinic acid dehydratase Clocl_1788 PF00202 Aminotransferase class-III Clocl_1790 PF00425 chorismate binding enzyme Clocl_1791 PF01063 Amino-transferase class IV Clocl_1793 PF00665 Integrase core domain Clocl_1794 PF01695 IstB-like ATP binding protein Clocl_1795 PF17189 Glycosyl hydrolase family 30 beta sandwich domain Clocl_1796 PF01113 Dihydrodipicolinate reductase, N-terminus Clocl_1796 PF05173 Dihydrodipicolinate reductase, C-terminus Clocl_1797 PF02899 Phage integrase, N-terminal SAM-like domain Clocl_1797 PF00589 Phage integrase family Clocl_1799 PF00963 Cohesin domain Clocl_1799 PF00395 S-layer homology domain Clocl_1800 PF01648 4'-phosphopantetheinyl transferase superfamily Clocl_1802 PF07702 UTRA domain Clocl_1802 PF00392 Bacterial regulatory proteins, gntR family Clocl_1803 PF00206 Lyase Clocl_1803 PF10397 Adenylosuccinate lyase C-terminus Clocl_1804 PF00155 Aminotransferase class I and II Clocl_1805 PF01244 Membrane dipeptidase (Peptidase family M19) Clocl_1806 PF00942 Cellulose binding domain Clocl_1806 PF00759 Glycosyl hydrolase family 9 Clocl_1807 PF04002 RadC-like JAB domain Clocl_1808 PF02021 Uncharacterised protein family UPF0102 Clocl_1809 PF01312 FlhB HrpN YscU SpaS Family Clocl_1811 PF00404 Dockerin type I domain Clocl_1811 PF00722 Glycosyl hydrolases family 16 Clocl_1812 PF00356 Bacterial regulatory proteins, lacI family Clocl_1813 PF01351 Ribonuclease HII Clocl_1814 PF01926 50S ribosome-binding GTPase Clocl_1815 PF10502 Signal peptidase, peptidase S26 Clocl_1816 PF01245 Ribosomal protein L19 Clocl_1817 PF13936 Helix-turn-helix domain Clocl_1820 PF00012 Hsp70 protein Clocl_1821 PF02743 Cache domain Clocl_1821 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_1821 PF00672 HAMP domain Clocl_1824 PF02156 Glycosyl hydrolase family 26 Clocl_1827 PF00294 pfkB family carbohydrate kinase Clocl_1829 PF01264 Chorismate synthase Clocl_1830 PF01202 Shikimate kinase Clocl_1831 PF03816 Cell envelope-related transcriptional attenuator domain Clocl_1832 PF02127 Aminopeptidase I zinc metalloprotease (M18) Clocl_1833 PF01966 HD domain Clocl_1835 PF00579 tRNA synthetases class I (W and Y) Clocl_1837 PF01592 NifU-like N terminal domain Clocl_1838 PF00266 Aminotransferase class-V Clocl_1839 PF02082 Transcriptional regulator Clocl_1842 PF01739 CheR methyltransferase, SAM binding domain Clocl_1842 PF03705 CheR methyltransferase, all-alpha domain Clocl_1843 PF00334 Nucleoside diphosphate kinase Clocl_1844 PF02675 S-adenosylmethionine decarboxylase Clocl_1845 PF02401 LytB protein Clocl_1845 PF00575 S1 RNA binding domain Clocl_1847 PF02224 Cytidylate kinase Clocl_1848 PF07736 Chorismate mutase type I Clocl_1853 PF00300 Histidine phosphatase superfamily (branch 1) Clocl_1854 PF01380 SIS domain Clocl_1854 PF01418 Helix-turn-helix domain, rpiR family Clocl_1857 PF00550 Phosphopantetheine attachment site Clocl_1857 PF02801 Beta-ketoacyl synthase, C-terminal domain Clocl_1857 PF00109 Beta-ketoacyl synthase, N-terminal domain Clocl_1857 PF16197 Ketoacyl-synthetase C-terminal extension Clocl_1857 PF00668 Condensation domain Clocl_1857 PF00698 Acyl transferase domain Clocl_1858 PF00501 AMP-binding enzyme Clocl_1858 PF13193 AMP-binding enzyme C-terminal domain Clocl_1859 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Clocl_1859 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Clocl_1860 PF00550 Phosphopantetheine attachment site Clocl_1861 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Clocl_1861 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Clocl_1862 PF03330 Lytic transglycolase Clocl_1863 PF00942 Cellulose binding domain Clocl_1863 PF00759 Glycosyl hydrolase family 9 Clocl_1863 PF00404 Dockerin type I domain Clocl_1864 PF00942 Cellulose binding domain Clocl_1864 PF00759 Glycosyl hydrolase family 9 Clocl_1866 PF12706 Beta-lactamase superfamily domain Clocl_1868 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Clocl_1868 PF01266 FAD dependent oxidoreductase Clocl_1869 PF16369 C-terminal lipocalin-like domain Clocl_1869 PF04616 Glycosyl hydrolases family 43 Clocl_1870 PF04172 LrgB-like family Clocl_1871 PF03788 LrgA family Clocl_1877 PF08281 Sigma-70, region 4 Clocl_1877 PF04542 Sigma-70 region 2 Clocl_1878 PF12146 Serine aminopeptidase, S33 Clocl_1878 PF13026 Protein of unknown function (DUF3887) Clocl_1880 PF00005 ABC transporter Clocl_1880 PF13732 Domain of unknown function (DUF4162) Clocl_1887 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Clocl_1887 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_1888 PF03169 OPT oligopeptide transporter protein Clocl_1889 PF07687 Peptidase dimerisation domain Clocl_1889 PF01546 Peptidase family M20/M25/M40 Clocl_1890 PF00595 PDZ domain Clocl_1891 PF04474 Protein of unknown function (DUF554) Clocl_1892 PF01212 Beta-eliminating lyase Clocl_1893 PF00404 Dockerin type I domain Clocl_1893 PF00657 GDSL-like Lipase/Acylhydrolase Clocl_1898 PF13416 Bacterial extracellular solute-binding protein Clocl_1899 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1900 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_1901 PF08402 TOBE domain Clocl_1901 PF00005 ABC transporter Clocl_1903 PF07733 Bacterial DNA polymerase III alpha NTPase domain Clocl_1903 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Clocl_1903 PF14579 Helix-hairpin-helix motif Clocl_1903 PF00929 Exonuclease Clocl_1903 PF01336 OB-fold nucleic acid binding domain Clocl_1903 PF11490 DNA polymerase III polC-type N-terminus II Clocl_1903 PF02811 PHP domain Clocl_1908 PF14659 Phage integrase, N-terminal SAM-like domain Clocl_1908 PF00589 Phage integrase family Clocl_1912 PF04851 Type III restriction enzyme, res subunit Clocl_1912 PF08774 VRR-NUC domain Clocl_1913 PF18273 Type III R-M EcoP15I C-terminal domain Clocl_1913 PF01555 DNA methylase Clocl_1915 PF00271 Helicase conserved C-terminal domain Clocl_1915 PF00176 SNF2 family N-terminal domain Clocl_1917 PF02796 Helix-turn-helix domain of resolvase Clocl_1917 PF00239 Resolvase, N terminal domain Clocl_1926 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Clocl_1928 PF14579 Helix-hairpin-helix motif Clocl_1928 PF14480 DNA polymerase III polC-type N-terminus I Clocl_1928 PF11490 DNA polymerase III polC-type N-terminus II Clocl_1928 PF07733 Bacterial DNA polymerase III alpha NTPase domain Clocl_1928 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Clocl_1928 PF02811 PHP domain Clocl_1928 PF00929 Exonuclease Clocl_1929 PF04055 Radical SAM superfamily Clocl_1930 PF02901 Pyruvate formate lyase-like Clocl_1930 PF01228 Glycine radical Clocl_1936 PF04542 Sigma-70 region 2 Clocl_1936 PF04539 Sigma-70 region 3 Clocl_1936 PF04545 Sigma-70, region 4 Clocl_1938 PF03975 CheD chemotactic sensory transduction Clocl_1939 PF04509 CheC-like family Clocl_1940 PF01584 CheW-like domain Clocl_1941 PF07194 P2 response regulator binding domain Clocl_1941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_1941 PF02895 Signal transducing histidine kinase, homodimeric domain Clocl_1941 PF01584 CheW-like domain Clocl_1941 PF01627 Hpt domain Clocl_1942 PF01339 CheB methylesterase Clocl_1942 PF00072 Response regulator receiver domain Clocl_1944 PF10609 NUBPL iron-transfer P-loop NTPase Clocl_1945 PF00448 SRP54-type protein, GTPase domain Clocl_1946 PF00771 FHIPEP family Clocl_1947 PF01312 FlhB HrpN YscU SpaS Family Clocl_1948 PF01311 Bacterial export proteins, family 1 Clocl_1949 PF01313 Bacterial export proteins, family 3 Clocl_1950 PF00813 FliP family Clocl_1952 PF00072 Response regulator receiver domain Clocl_1953 PF04509 CheC-like family Clocl_1953 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Clocl_1954 PF02154 Flagellar motor switch protein FliM Clocl_1954 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Clocl_1957 PF07559 Flagellar basal body protein FlaE Clocl_1957 PF00460 Flagella basal body rod protein Clocl_1957 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clocl_1959 PF03963 Flagellar hook capping protein - N-terminal region Clocl_1961 PF02371 Transposase IS116/IS110/IS902 family Clocl_1961 PF01548 Transposase Clocl_1964 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clocl_1964 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clocl_1964 PF18269 T3SS EscN ATPase C-terminal domain Clocl_1965 PF02108 Flagellar assembly protein FliH Clocl_1966 PF01706 FliG C-terminal domain Clocl_1966 PF14841 FliG middle domain Clocl_1966 PF14842 FliG N-terminal domain Clocl_1968 PF02049 Flagellar hook-basal body complex protein FliE Clocl_1969 PF00460 Flagella basal body rod protein Clocl_1969 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clocl_1970 PF00460 Flagella basal body rod protein Clocl_1971 PF01134 Glucose inhibited division protein A Clocl_1972 PF01396 Topoisomerase DNA binding C4 zinc finger Clocl_1972 PF01131 DNA topoisomerase Clocl_1972 PF01751 Toprim domain Clocl_1973 PF02481 DNA recombination-mediator protein A Clocl_1973 PF17782 DprA winged helix domain Clocl_1974 PF01078 Magnesium chelatase, subunit ChlI Clocl_1974 PF13335 Magnesium chelatase, subunit ChlI C-terminal Clocl_1975 PF00942 Cellulose binding domain Clocl_1975 PF03442 Carbohydrate binding domain X2 Clocl_1975 PF00759 Glycosyl hydrolase family 9 Clocl_1976 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clocl_1978 PF00963 Cohesin domain Clocl_1978 PF00395 S-layer homology domain Clocl_1979 PF00975 Thioesterase domain Clocl_1981 PF00404 Dockerin type I domain Clocl_1981 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_1985 PF00999 Sodium/hydrogen exchanger family Clocl_1985 PF02080 TrkA-C domain Clocl_1985 PF03471 Transporter associated domain Clocl_1989 PF08331 Domain of unknown function (DUF1730) Clocl_1990 PF00300 Histidine phosphatase superfamily (branch 1) Clocl_1998 PF06463 Molybdenum Cofactor Synthesis C Clocl_1998 PF04055 Radical SAM superfamily Clocl_2004 PF02574 Homocysteine S-methyltransferase Clocl_2004 PF00809 Pterin binding enzyme Clocl_2004 PF02607 B12 binding domain Clocl_2004 PF02310 B12 binding domain Clocl_2004 PF02965 Vitamin B12 dependent methionine synthase, activation domain Clocl_2010 PF01048 Phosphorylase superfamily Clocl_2011 PF01008 Initiation factor 2 subunit family Clocl_2012 PF01761 3-dehydroquinate synthase Clocl_2014 PF01479 S4 domain Clocl_2014 PF17774 Putative RNA-binding domain in YlmH Clocl_2016 PF04472 Cell division protein SepF Clocl_2017 PF01168 Alanine racemase, N-terminal domain Clocl_2019 PF06838 Methionine gamma-lyase Clocl_2020 PF02903 Alpha amylase, N-terminal ig-like domain Clocl_2020 PF00128 Alpha amylase, catalytic domain Clocl_2021 PF00849 RNA pseudouridylate synthase Clocl_2026 PF00486 Transcriptional regulatory protein, C terminal Clocl_2026 PF00072 Response regulator receiver domain Clocl_2027 PF00672 HAMP domain Clocl_2027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_2027 PF00512 His Kinase A (phospho-acceptor) domain Clocl_2027 PF01627 Hpt domain Clocl_2027 PF00072 Response regulator receiver domain Clocl_2027 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Clocl_2028 PF00072 Response regulator receiver domain Clocl_2028 PF01339 CheB methylesterase Clocl_2029 PF01739 CheR methyltransferase, SAM binding domain Clocl_2029 PF03705 CheR methyltransferase, all-alpha domain Clocl_2030 PF01584 CheW-like domain Clocl_2031 PF07194 P2 response regulator binding domain Clocl_2031 PF01627 Hpt domain Clocl_2031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_2031 PF02895 Signal transducing histidine kinase, homodimeric domain Clocl_2031 PF01584 CheW-like domain Clocl_2032 PF00072 Response regulator receiver domain Clocl_2033 PF08769 Sporulation initiation factor Spo0A C terminal Clocl_2033 PF00072 Response regulator receiver domain Clocl_2034 PF17820 PDZ domain Clocl_2034 PF05580 SpoIVB peptidase S55 Clocl_2035 PF02463 RecF/RecN/SMC N terminal domain Clocl_2036 PF01316 Arginine repressor, DNA binding domain Clocl_2036 PF02863 Arginine repressor, C-terminal domain Clocl_2037 PF01513 ATP-NAD kinase Clocl_2040 PF01915 Glycosyl hydrolase family 3 C-terminal domain Clocl_2040 PF00933 Glycosyl hydrolase family 3 N terminal domain Clocl_2040 PF14310 Fibronectin type III-like domain Clocl_2042 PF00768 D-alanyl-D-alanine carboxypeptidase Clocl_2042 PF07943 Penicillin-binding protein 5, C-terminal domain Clocl_2044 PF12791 Anti-sigma factor N-terminus Clocl_2045 PF04542 Sigma-70 region 2 Clocl_2050 PF00005 ABC transporter Clocl_2051 PF00672 HAMP domain Clocl_2051 PF00512 His Kinase A (phospho-acceptor) domain Clocl_2051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_2052 PF00072 Response regulator receiver domain Clocl_2052 PF00486 Transcriptional regulatory protein, C terminal Clocl_2054 PF00072 Response regulator receiver domain Clocl_2054 PF00486 Transcriptional regulatory protein, C terminal Clocl_2055 PF00512 His Kinase A (phospho-acceptor) domain Clocl_2055 PF00989 PAS fold Clocl_2055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_2055 PF00672 HAMP domain Clocl_2057 PF01479 S4 domain Clocl_2057 PF01728 FtsJ-like methyltransferase Clocl_2058 PF02779 Transketolase, pyrimidine binding domain Clocl_2058 PF02780 Transketolase, C-terminal domain Clocl_2058 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Clocl_2061 PF00348 Polyprenyl synthetase Clocl_2062 PF02609 Exonuclease VII small subunit Clocl_2063 PF02601 Exonuclease VII, large subunit Clocl_2063 PF13742 OB-fold nucleic acid binding domain Clocl_2064 PF01029 NusB family Clocl_2067 PF03780 Asp23 family, cell envelope-related function Clocl_2071 PF09546 Stage III sporulation protein AE (spore_III_AE) Clocl_2072 PF06686 Stage III sporulation protein AC/AD protein family Clocl_2073 PF06686 Stage III sporulation protein AC/AD protein family Clocl_2076 PF00860 Permease family Clocl_2077 PF04542 Sigma-70 region 2 Clocl_2079 PF01966 HD domain Clocl_2079 PF00072 Response regulator receiver domain Clocl_2080 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain Clocl_2081 PF01580 FtsK/SpoIIIE family Clocl_2081 PF09397 Ftsk gamma domain Clocl_2081 PF17854 FtsK alpha domain Clocl_2081 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Clocl_2083 PF00457 Glycosyl hydrolases family 11 Clocl_2083 PF03422 Carbohydrate binding module (family 6) Clocl_2085 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2086 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2089 PF00664 ABC transporter transmembrane region Clocl_2089 PF00005 ABC transporter Clocl_2095 PF01554 MatE Clocl_2097 PF00404 Dockerin type I domain Clocl_2097 PF13472 GDSL-like Lipase/Acylhydrolase family Clocl_2098 PF12791 Anti-sigma factor N-terminus Clocl_2098 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Clocl_2099 PF04542 Sigma-70 region 2 Clocl_2100 PF03009 Glycerophosphoryl diester phosphodiesterase family Clocl_2103 PF02371 Transposase IS116/IS110/IS902 family Clocl_2103 PF01548 Transposase Clocl_2108 PF00395 S-layer homology domain Clocl_2108 PF00963 Cohesin domain Clocl_2110 PF01784 NIF3 (NGG1p interacting factor 3) Clocl_2118 PF03979 Sigma-70 factor, region 1.1 Clocl_2118 PF04545 Sigma-70, region 4 Clocl_2118 PF04542 Sigma-70 region 2 Clocl_2118 PF00140 Sigma-70 factor, region 1.2 Clocl_2118 PF04539 Sigma-70 region 3 Clocl_2119 PF10410 DnaB-helicase binding domain of primase Clocl_2119 PF08275 DNA primase catalytic core, N-terminal domain Clocl_2119 PF01807 CHC2 zinc finger Clocl_2120 PF01966 HD domain Clocl_2120 PF13286 Phosphohydrolase-associated domain Clocl_2122 PF00072 Response regulator receiver domain Clocl_2124 PF02261 Aspartate decarboxylase Clocl_2125 PF02569 Pantoate-beta-alanine ligase Clocl_2126 PF02548 Ketopantoate hydroxymethyltransferase Clocl_2127 PF02355 Protein export membrane protein Clocl_2127 PF07549 SecD/SecF GG Motif Clocl_2128 PF07549 SecD/SecF GG Motif Clocl_2128 PF02355 Protein export membrane protein Clocl_2129 PF01966 HD domain Clocl_2129 PF00013 KH domain Clocl_2129 PF12072 Domain of unknown function (DUF3552) Clocl_2130 PF04055 Radical SAM superfamily Clocl_2132 PF01479 S4 domain Clocl_2132 PF00849 RNA pseudouridylate synthase Clocl_2133 PF01252 Signal peptidase (SPase) II Clocl_2134 PF01966 HD domain Clocl_2134 PF13286 Phosphohydrolase-associated domain Clocl_2135 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2136 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2138 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_2138 PF08369 Proto-chlorophyllide reductase 57 kD subunit Clocl_2139 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_2140 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Clocl_2143 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2148 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clocl_2149 PF02578 Multi-copper polyphenol oxidoreductase laccase Clocl_2154 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Clocl_2154 PF00749 tRNA synthetases class I (E and Q), catalytic domain Clocl_2156 PF00478 IMP dehydrogenase / GMP reductase domain Clocl_2156 PF00571 CBS domain Clocl_2157 PF00106 short chain dehydrogenase Clocl_2159 PF01266 FAD dependent oxidoreductase Clocl_2159 PF00355 Rieske [2Fe-2S] domain Clocl_2160 PF12627 Probable RNA and SrmB- binding site of polymerase A Clocl_2160 PF01966 HD domain Clocl_2160 PF01743 Poly A polymerase head domain Clocl_2166 PF01867 CRISPR associated protein Cas1 Clocl_2181 PF03477 ATP cone domain Clocl_2182 PF05239 PRC-barrel domain Clocl_2183 PF04542 Sigma-70 region 2 Clocl_2183 PF04539 Sigma-70 region 3 Clocl_2183 PF04545 Sigma-70, region 4 Clocl_2184 PF04542 Sigma-70 region 2 Clocl_2184 PF04545 Sigma-70, region 4 Clocl_2187 PF12327 FtsZ family, C-terminal domain Clocl_2187 PF00091 Tubulin/FtsZ family, GTPase domain Clocl_2188 PF02491 SHS2 domain inserted in FTSA Clocl_2189 PF06947 Protein of unknown function (DUF1290) Clocl_2190 PF08478 POTRA domain, FtsQ-type Clocl_2192 PF08245 Mur ligase middle domain Clocl_2192 PF08353 Domain of unknown function (DUF1727) Clocl_2193 PF07685 CobB/CobQ-like glutamine amidotransferase domain Clocl_2194 PF00395 S-layer homology domain Clocl_2194 PF06452 Carbohydrate family 9 binding domain-like Clocl_2194 PF00331 Glycosyl hydrolase family 10 Clocl_2194 PF02018 Carbohydrate binding domain Clocl_2197 PF03129 Anticodon binding domain Clocl_2197 PF04073 Aminoacyl-tRNA editing domain Clocl_2197 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clocl_2198 PF00465 Iron-containing alcohol dehydrogenase Clocl_2199 PF01174 SNO glutamine amidotransferase family Clocl_2200 PF01680 SOR/SNZ family Clocl_2201 PF00392 Bacterial regulatory proteins, gntR family Clocl_2201 PF00155 Aminotransferase class I and II Clocl_2202 PF00291 Pyridoxal-phosphate dependent enzyme Clocl_2203 PF01053 Cys/Met metabolism PLP-dependent enzyme Clocl_2204 PF02082 Transcriptional regulator Clocl_2205 PF02082 Transcriptional regulator Clocl_2206 PF04204 Homoserine O-succinyltransferase Clocl_2207 PF00403 Heavy-metal-associated domain Clocl_2208 PF00403 Heavy-metal-associated domain Clocl_2210 PF00672 HAMP domain Clocl_2210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_2210 PF00512 His Kinase A (phospho-acceptor) domain Clocl_2211 PF00486 Transcriptional regulatory protein, C terminal Clocl_2211 PF00072 Response regulator receiver domain Clocl_2218 PF13091 PLD-like domain Clocl_2220 PF08281 Sigma-70, region 4 Clocl_2220 PF04542 Sigma-70 region 2 Clocl_2221 PF05448 Acetyl xylan esterase (AXE1) Clocl_2222 PF00817 impB/mucB/samB family Clocl_2222 PF11799 impB/mucB/samB family C-terminal domain Clocl_2223 PF00933 Glycosyl hydrolase family 3 N terminal domain Clocl_2223 PF14310 Fibronectin type III-like domain Clocl_2223 PF01915 Glycosyl hydrolase family 3 C-terminal domain Clocl_2224 PF07385 D-lyxose isomerase Clocl_2225 PF00942 Cellulose binding domain Clocl_2225 PF00759 Glycosyl hydrolase family 9 Clocl_2227 PF01066 CDP-alcohol phosphatidyltransferase Clocl_2229 PF00365 Phosphofructokinase Clocl_2232 PF02081 Tryptophan RNA-binding attenuator protein Clocl_2233 PF01336 OB-fold nucleic acid binding domain Clocl_2233 PF02811 PHP domain Clocl_2233 PF14579 Helix-hairpin-helix motif Clocl_2233 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Clocl_2233 PF07733 Bacterial DNA polymerase III alpha NTPase domain Clocl_2234 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Clocl_2234 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Clocl_2234 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Clocl_2234 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Clocl_2235 PF00872 Transposase, Mutator family Clocl_2237 PF05979 Bacterial protein of unknown function (DUF896) Clocl_2239 PF00196 Bacterial regulatory proteins, luxR family Clocl_2239 PF00072 Response regulator receiver domain Clocl_2240 PF05384 Sensor protein DegS Clocl_2240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_2240 PF07730 Histidine kinase Clocl_2241 PF07670 Nucleoside recognition Clocl_2243 PF01467 Cytidylyltransferase-like Clocl_2245 PF17191 RecG wedge domain Clocl_2245 PF00271 Helicase conserved C-terminal domain Clocl_2245 PF00270 DEAD/DEAH box helicase Clocl_2246 PF00830 Ribosomal L28 family Clocl_2249 PF00990 Diguanylate cyclase, GGDEF domain Clocl_2250 PF02491 SHS2 domain inserted in FTSA Clocl_2251 PF00730 HhH-GPD superfamily base excision DNA repair protein Clocl_2251 PF00633 Helix-hairpin-helix motif Clocl_2252 PF00534 Glycosyl transferases group 1 Clocl_2252 PF08323 Starch synthase catalytic domain Clocl_2253 PF01966 HD domain Clocl_2254 PF13180 PDZ domain Clocl_2255 PF00512 His Kinase A (phospho-acceptor) domain Clocl_2255 PF00672 HAMP domain Clocl_2255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_2256 PF00072 Response regulator receiver domain Clocl_2256 PF00486 Transcriptional regulatory protein, C terminal Clocl_2260 PF01676 Metalloenzyme superfamily Clocl_2260 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Clocl_2262 PF07739 TipAS antibiotic-recognition domain Clocl_2262 PF13411 MerR HTH family regulatory protein Clocl_2263 PF02586 SOS response associated peptidase (SRAP) Clocl_2265 PF00817 impB/mucB/samB family Clocl_2265 PF11799 impB/mucB/samB family C-terminal domain Clocl_2273 PF00005 ABC transporter Clocl_2274 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2275 PF00497 Bacterial extracellular solute-binding proteins, family 3 Clocl_2279 PF01812 5-formyltetrahydrofolate cyclo-ligase family Clocl_2282 PF14693 Ribosomal protein TL5, C-terminal domain Clocl_2282 PF01386 Ribosomal L25p family Clocl_2286 PF05636 HIGH Nucleotidyl Transferase Clocl_2287 PF00753 Metallo-beta-lactamase superfamily Clocl_2287 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Clocl_2287 PF17770 Ribonuclease J C-terminal domain Clocl_2288 PF13439 Glycosyltransferase Family 4 Clocl_2288 PF00534 Glycosyl transferases group 1 Clocl_2289 PF02562 PhoH-like protein Clocl_2289 PF13638 PIN domain Clocl_2290 PF07883 Cupin domain Clocl_2292 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Clocl_2294 PF00963 Cohesin domain Clocl_2294 PF00395 S-layer homology domain Clocl_2295 PF03358 NADPH-dependent FMN reductase Clocl_2296 PF00403 Heavy-metal-associated domain Clocl_2297 PF00005 ABC transporter Clocl_2299 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2300 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2301 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_2302 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_2303 PF01208 Uroporphyrinogen decarboxylase (URO-D) Clocl_2304 PF02310 B12 binding domain Clocl_2304 PF02607 B12 binding domain Clocl_2305 PF00291 Pyridoxal-phosphate dependent enzyme Clocl_2306 PF00881 Nitroreductase family Clocl_2307 PF02579 Dinitrogenase iron-molybdenum cofactor Clocl_2307 PF04055 Radical SAM superfamily Clocl_2311 PF00872 Transposase, Mutator family Clocl_2313 PF13005 zinc-finger binding domain of transposase IS66 Clocl_2313 PF13007 Transposase C of IS166 homeodomain Clocl_2313 PF13817 IS66 C-terminal element Clocl_2313 PF03050 Transposase IS66 family Clocl_2314 PF01695 IstB-like ATP binding protein Clocl_2315 PF00665 Integrase core domain Clocl_2317 PF01527 Transposase Clocl_2321 PF01797 Transposase IS200 like Clocl_2329 PF05717 IS66 Orf2 like protein Clocl_2331 PF03050 Transposase IS66 family Clocl_2331 PF13005 zinc-finger binding domain of transposase IS66 Clocl_2331 PF13817 IS66 C-terminal element Clocl_2331 PF13007 Transposase C of IS166 homeodomain Clocl_2332 PF05717 IS66 Orf2 like protein Clocl_2333 PF01527 Transposase Clocl_2340 PF05717 IS66 Orf2 like protein Clocl_2341 PF01527 Transposase Clocl_2344 PF05593 RHS Repeat Clocl_2349 PF03050 Transposase IS66 family Clocl_2349 PF13817 IS66 C-terminal element Clocl_2349 PF13005 zinc-finger binding domain of transposase IS66 Clocl_2349 PF13007 Transposase C of IS166 homeodomain Clocl_2350 PF05717 IS66 Orf2 like protein Clocl_2351 PF01527 Transposase Clocl_2353 PF05593 RHS Repeat Clocl_2354 PF02368 Bacterial Ig-like domain (group 2) Clocl_2360 PF00665 Integrase core domain Clocl_2366 PF01695 IstB-like ATP binding protein Clocl_2367 PF00665 Integrase core domain Clocl_2372 PF04232 Stage V sporulation protein S (SpoVS) Clocl_2375 PF14622 Ribonuclease-III-like Clocl_2375 PF00035 Double-stranded RNA binding motif Clocl_2376 PF00109 Beta-ketoacyl synthase, N-terminal domain Clocl_2376 PF02801 Beta-ketoacyl synthase, C-terminal domain Clocl_2377 PF00550 Phosphopantetheine attachment site Clocl_2379 PF00698 Acyl transferase domain Clocl_2380 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Clocl_2380 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Clocl_2381 PF02504 Fatty acid synthesis protein Clocl_2382 PF03061 Thioesterase superfamily Clocl_2383 PF01066 CDP-alcohol phosphatidyltransferase Clocl_2384 PF04055 Radical SAM superfamily Clocl_2384 PF00919 Uncharacterized protein family UPF0004 Clocl_2384 PF18693 TRAM domain Clocl_2388 PF00300 Histidine phosphatase superfamily (branch 1) Clocl_2389 PF01180 Dihydroorotate dehydrogenase Clocl_2390 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Clocl_2391 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Clocl_2391 PF02142 MGS-like domain Clocl_2391 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Clocl_2392 PF00117 Glutamine amidotransferase class-I Clocl_2392 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Clocl_2393 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Clocl_2394 PF01979 Amidohydrolase family Clocl_2395 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Clocl_2395 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Clocl_2397 PF00156 Phosphoribosyl transferase domain Clocl_2402 PF02699 Preprotein translocase subunit Clocl_2403 PF01702 Queuine tRNA-ribosyltransferase Clocl_2404 PF02547 Queuosine biosynthesis protein Clocl_2405 PF04122 Putative cell wall binding repeat 2 Clocl_2405 PF08486 Stage II sporulation protein Clocl_2406 PF00701 Dihydrodipicolinate synthetase family Clocl_2407 PF01113 Dihydrodipicolinate reductase, N-terminus Clocl_2407 PF05173 Dihydrodipicolinate reductase, C-terminus Clocl_2408 PF13840 ACT domain Clocl_2408 PF00696 Amino acid kinase family Clocl_2409 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Clocl_2409 PF12557 Cob(I)alamin adenosyltransferase N terminal Clocl_2411 PF02146 Sir2 family Clocl_2412 PF08000 Bacterial PH domain Clocl_2413 PF00005 ABC transporter Clocl_2413 PF12848 ABC transporter Clocl_2416 PF00535 Glycosyl transferase family 2 Clocl_2419 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clocl_2420 PF04101 Glycosyltransferase family 28 C-terminal domain Clocl_2420 PF03033 Glycosyltransferase family 28 N-terminal domain Clocl_2421 PF01098 Cell cycle protein Clocl_2422 PF00953 Glycosyl transferase family 4 Clocl_2423 PF02875 Mur ligase family, glutamate ligase domain Clocl_2423 PF01225 Mur ligase family, catalytic domain Clocl_2423 PF08245 Mur ligase middle domain Clocl_2424 PF01225 Mur ligase family, catalytic domain Clocl_2424 PF02875 Mur ligase family, glutamate ligase domain Clocl_2424 PF08245 Mur ligase middle domain Clocl_2425 PF03793 PASTA domain Clocl_2425 PF03717 Penicillin-binding Protein dimerisation domain Clocl_2425 PF00905 Penicillin binding protein transpeptidase domain Clocl_2427 PF01795 MraW methylase family Clocl_2428 PF02381 MraZ protein, putative antitoxin-like Clocl_2429 PF01098 Cell cycle protein Clocl_2431 PF01790 Prolipoprotein diacylglyceryl transferase Clocl_2432 PF00675 Insulinase (Peptidase family M16) Clocl_2432 PF05193 Peptidase M16 inactive domain Clocl_2433 PF05193 Peptidase M16 inactive domain Clocl_2434 PF00990 Diguanylate cyclase, GGDEF domain Clocl_2435 PF00331 Glycosyl hydrolase family 10 Clocl_2435 PF00457 Glycosyl hydrolases family 11 Clocl_2436 PF00356 Bacterial regulatory proteins, lacI family Clocl_2437 PF04616 Glycosyl hydrolases family 43 Clocl_2437 PF03422 Carbohydrate binding module (family 6) Clocl_2438 PF00404 Dockerin type I domain Clocl_2438 PF13472 GDSL-like Lipase/Acylhydrolase family Clocl_2439 PF00596 Class II Aldolase and Adducin N-terminal domain Clocl_2440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Clocl_2440 PF06134 L-rhamnose isomerase (RhaA) Clocl_2440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Clocl_2441 PF03422 Carbohydrate binding module (family 6) Clocl_2441 PF00404 Dockerin type I domain Clocl_2441 PF00756 Putative esterase Clocl_2441 PF00331 Glycosyl hydrolase family 10 Clocl_2442 PF04616 Glycosyl hydrolases family 43 Clocl_2443 PF01229 Glycosyl hydrolases family 39 Clocl_2445 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Clocl_2446 PF00144 Beta-lactamase Clocl_2447 PF00404 Dockerin type I domain Clocl_2447 PF03422 Carbohydrate binding module (family 6) Clocl_2447 PF00756 Putative esterase Clocl_2447 PF00331 Glycosyl hydrolase family 10 Clocl_2449 PF06574 FAD synthetase Clocl_2449 PF01687 Riboflavin kinase Clocl_2450 PF16198 tRNA pseudouridylate synthase B C-terminal domain Clocl_2450 PF01509 TruB family pseudouridylate synthase (N terminal domain) Clocl_2451 PF02272 DHHA1 domain Clocl_2451 PF01368 DHH family Clocl_2452 PF02033 Ribosome-binding factor A Clocl_2453 PF00009 Elongation factor Tu GTP binding domain Clocl_2453 PF11987 Translation-initiation factor 2 Clocl_2453 PF04760 Translation initiation factor IF-2, N-terminal region Clocl_2454 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Clocl_2455 PF04296 Protein of unknown function (DUF448) Clocl_2456 PF00575 S1 RNA binding domain Clocl_2456 PF13184 NusA-like KH domain Clocl_2456 PF08529 NusA N-terminal domain Clocl_2457 PF02576 RimP N-terminal domain Clocl_2457 PF17384 RimP C-terminal SH3 domain Clocl_2458 PF04551 GcpE protein Clocl_2459 PF13180 PDZ domain Clocl_2459 PF02163 Peptidase family M50 Clocl_2460 PF13288 DXP reductoisomerase C-terminal domain Clocl_2460 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Clocl_2460 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Clocl_2462 PF01255 Putative undecaprenyl diphosphate synthase Clocl_2464 PF01765 Ribosome recycling factor Clocl_2465 PF00696 Amino acid kinase family Clocl_2466 PF00889 Elongation factor TS Clocl_2467 PF00318 Ribosomal protein S2 Clocl_2468 PF00679 Elongation factor G C-terminus Clocl_2468 PF00009 Elongation factor Tu GTP binding domain Clocl_2468 PF03144 Elongation factor Tu domain 2 Clocl_2469 PF02618 YceG-like family Clocl_2470 PF01596 O-methyltransferase Clocl_2471 PF16325 Peptidase family U32 C-terminal domain Clocl_2471 PF01136 Peptidase family U32 Clocl_2472 PF03717 Penicillin-binding Protein dimerisation domain Clocl_2472 PF00905 Penicillin binding protein transpeptidase domain Clocl_2474 PF04542 Sigma-70 region 2 Clocl_2474 PF04545 Sigma-70, region 4 Clocl_2475 PF01594 AI-2E family transporter Clocl_2476 PF00290 Tryptophan synthase alpha chain Clocl_2477 PF00465 Iron-containing alcohol dehydrogenase Clocl_2479 PF01048 Phosphorylase superfamily Clocl_2480 PF00294 pfkB family carbohydrate kinase Clocl_2482 PF02653 Branched-chain amino acid transport system / permease component Clocl_2483 PF02653 Branched-chain amino acid transport system / permease component Clocl_2484 PF00005 ABC transporter Clocl_2486 PF00392 Bacterial regulatory proteins, gntR family Clocl_2486 PF07702 UTRA domain Clocl_2495 PF00872 Transposase, Mutator family Clocl_2498 PF05593 RHS Repeat Clocl_2505 PF05593 RHS Repeat Clocl_2506 PF00488 MutS domain V Clocl_2506 PF01713 Smr domain Clocl_2508 PF01520 N-acetylmuramoyl-L-alanine amidase Clocl_2510 PF13416 Bacterial extracellular solute-binding protein Clocl_2513 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2514 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2516 PF09547 Stage IV sporulation protein A (spore_IV_A) Clocl_2517 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Clocl_2517 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Clocl_2518 PF02660 Glycerol-3-phosphate acyltransferase Clocl_2519 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Clocl_2519 PF01926 50S ribosome-binding GTPase Clocl_2520 PF13180 PDZ domain Clocl_2520 PF17820 PDZ domain Clocl_2521 PF01783 Ribosomal L32p protein family Clocl_2522 PF02620 Large ribosomal RNA subunit accumulation protein YceD Clocl_2523 PF00871 Acetokinase family Clocl_2524 PF01515 Phosphate acetyl/butaryl transferase Clocl_2525 PF02934 GatB/GatE catalytic domain Clocl_2525 PF02637 GatB domain Clocl_2526 PF01425 Amidase Clocl_2527 PF02686 Glu-tRNAGln amidotransferase C subunit Clocl_2529 PF04542 Sigma-70 region 2 Clocl_2529 PF08281 Sigma-70, region 4 Clocl_2531 PF00872 Transposase, Mutator family Clocl_2532 PF12826 Helix-hairpin-helix motif Clocl_2532 PF00533 BRCA1 C Terminus (BRCT) domain Clocl_2532 PF01653 NAD-dependent DNA ligase adenylation domain Clocl_2532 PF03120 NAD-dependent DNA ligase OB-fold domain Clocl_2532 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Clocl_2534 PF01520 N-acetylmuramoyl-L-alanine amidase Clocl_2535 PF03418 Germination protease Clocl_2536 PF01649 Ribosomal protein S20 Clocl_2539 PF01476 LysM domain Clocl_2539 PF00877 NlpC/P60 family Clocl_2541 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clocl_2542 PF01964 Radical SAM ThiC family Clocl_2543 PF02581 Thiamine monophosphate synthase Clocl_2544 PF00581 Rhodanese-like domain Clocl_2544 PF00899 ThiF family Clocl_2546 PF05690 Thiazole biosynthesis protein ThiG Clocl_2547 PF05690 Thiazole biosynthesis protein ThiG Clocl_2547 PF02597 ThiS family Clocl_2548 PF01926 50S ribosome-binding GTPase Clocl_2553 PF00395 S-layer homology domain Clocl_2553 PF00963 Cohesin domain Clocl_2554 PF09586 Bacterial membrane protein YfhO Clocl_2555 PF00535 Glycosyl transferase family 2 Clocl_2557 PF00440 Bacterial regulatory proteins, tetR family Clocl_2557 PF13977 BetI-type transcriptional repressor, C-terminal Clocl_2560 PF00072 Response regulator receiver domain Clocl_2560 PF00158 Sigma-54 interaction domain Clocl_2561 PF05670 NFACT protein RNA binding domain Clocl_2562 PF00155 Aminotransferase class I and II Clocl_2563 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain Clocl_2563 PF04263 Thiamin pyrophosphokinase, catalytic domain Clocl_2564 PF00834 Ribulose-phosphate 3 epimerase family Clocl_2565 PF03193 RsgA GTPase Clocl_2565 PF16745 RsgA N-terminal domain Clocl_2566 PF03793 PASTA domain Clocl_2566 PF00069 Protein kinase domain Clocl_2568 PF04055 Radical SAM superfamily Clocl_2569 PF01029 NusB family Clocl_2569 PF01189 16S rRNA methyltransferase RsmB/F Clocl_2570 PF04298 Putative neutral zinc metallopeptidase Clocl_2572 PF02911 Formyl transferase, C-terminal domain Clocl_2572 PF00551 Formyl transferase Clocl_2573 PF01327 Polypeptide deformylase Clocl_2574 PF00271 Helicase conserved C-terminal domain Clocl_2574 PF04851 Type III restriction enzyme, res subunit Clocl_2574 PF17764 3′ DNA-binding domain (3′BD) Clocl_2574 PF18074 Primosomal protein N C-terminal domain Clocl_2574 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Clocl_2577 PF02424 ApbE family Clocl_2580 PF01522 Polysaccharide deacetylase Clocl_2582 PF01906 Putative heavy-metal-binding Clocl_2585 PF00733 Asparagine synthase Clocl_2585 PF13537 Glutamine amidotransferase domain Clocl_2586 PF13936 Helix-turn-helix domain Clocl_2588 PF00457 Glycosyl hydrolases family 11 Clocl_2588 PF03422 Carbohydrate binding module (family 6) Clocl_2589 PF00586 AIR synthase related protein, N-terminal domain Clocl_2589 PF02769 AIR synthase related protein, C-terminal domain Clocl_2589 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Clocl_2590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Clocl_2590 PF03466 LysR substrate binding domain Clocl_2592 PF00501 AMP-binding enzyme Clocl_2592 PF13193 AMP-binding enzyme C-terminal domain Clocl_2593 PF00183 Hsp90 protein Clocl_2594 PF01475 Ferric uptake regulator family Clocl_2600 PF00557 Metallopeptidase family M24 Clocl_2603 PF00872 Transposase, Mutator family Clocl_2605 PF02875 Mur ligase family, glutamate ligase domain Clocl_2605 PF08245 Mur ligase middle domain Clocl_2606 PF02810 SEC-C motif Clocl_2606 PF07517 SecA DEAD-like domain Clocl_2606 PF01043 SecA preprotein cross-linking domain Clocl_2606 PF07516 SecA Wing and Scaffold domain Clocl_2609 PF01371 Trp repressor protein Clocl_2610 PF13735 tRNA nucleotidyltransferase domain 2 putative Clocl_2610 PF01743 Poly A polymerase head domain Clocl_2610 PF12627 Probable RNA and SrmB- binding site of polymerase A Clocl_2618 PF18395 Cas3 C-terminal domain Clocl_2618 PF00270 DEAD/DEAH box helicase Clocl_2618 PF18019 HD domain Clocl_2622 PF02371 Transposase IS116/IS110/IS902 family Clocl_2622 PF01548 Transposase Clocl_2625 PF04539 Sigma-70 region 3 Clocl_2625 PF04542 Sigma-70 region 2 Clocl_2625 PF04545 Sigma-70, region 4 Clocl_2626 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Clocl_2627 PF00218 Indole-3-glycerol phosphate synthase Clocl_2628 PF02885 Glycosyl transferase family, helical bundle domain Clocl_2628 PF00591 Glycosyl transferase family, a/b domain Clocl_2629 PF02885 Glycosyl transferase family, helical bundle domain Clocl_2629 PF00591 Glycosyl transferase family, a/b domain Clocl_2629 PF00117 Glutamine amidotransferase class-I Clocl_2630 PF00425 chorismate binding enzyme Clocl_2630 PF04715 Anthranilate synthase component I, N terminal region Clocl_2631 PF00271 Helicase conserved C-terminal domain Clocl_2631 PF00270 DEAD/DEAH box helicase Clocl_2631 PF03880 DbpA RNA binding domain Clocl_2632 PF13936 Helix-turn-helix domain Clocl_2634 PF06071 Protein of unknown function (DUF933) Clocl_2634 PF01926 50S ribosome-binding GTPase Clocl_2635 PF01584 CheW-like domain Clocl_2636 PF00793 DAHP synthetase I family Clocl_2636 PF18152 DAHP synthase ferredoxin-like domain Clocl_2637 PF00990 Diguanylate cyclase, GGDEF domain Clocl_2637 PF13185 GAF domain Clocl_2639 PF02056 Family 4 glycosyl hydrolase Clocl_2639 PF11975 Family 4 glycosyl hydrolase C-terminal domain Clocl_2640 PF00072 Response regulator receiver domain Clocl_2640 PF00990 Diguanylate cyclase, GGDEF domain Clocl_2641 PF00892 EamA-like transporter family Clocl_2644 PF01121 Dephospho-CoA kinase Clocl_2645 PF01367 5'-3' exonuclease, C-terminal SAM fold Clocl_2645 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Clocl_2645 PF00476 DNA polymerase family A Clocl_2648 PF02371 Transposase IS116/IS110/IS902 family Clocl_2648 PF01548 Transposase Clocl_2649 PF08281 Sigma-70, region 4 Clocl_2649 PF04542 Sigma-70 region 2 Clocl_2651 PF02881 SRP54-type protein, helical bundle domain Clocl_2651 PF00448 SRP54-type protein, GTPase domain Clocl_2652 PF02463 RecF/RecN/SMC N terminal domain Clocl_2652 PF06470 SMC proteins Flexible Hinge Domain Clocl_2653 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Clocl_2655 PF00005 ABC transporter Clocl_2657 PF07690 Major Facilitator Superfamily Clocl_2658 PF16197 Ketoacyl-synthetase C-terminal extension Clocl_2658 PF13193 AMP-binding enzyme C-terminal domain Clocl_2658 PF02801 Beta-ketoacyl synthase, C-terminal domain Clocl_2658 PF00501 AMP-binding enzyme Clocl_2658 PF00550 Phosphopantetheine attachment site Clocl_2658 PF00109 Beta-ketoacyl synthase, N-terminal domain Clocl_2658 PF00202 Aminotransferase class-III Clocl_2658 PF00668 Condensation domain Clocl_2659 PF13193 AMP-binding enzyme C-terminal domain Clocl_2659 PF00668 Condensation domain Clocl_2659 PF00550 Phosphopantetheine attachment site Clocl_2659 PF00501 AMP-binding enzyme Clocl_2659 PF00975 Thioesterase domain Clocl_2660 PF02801 Beta-ketoacyl synthase, C-terminal domain Clocl_2660 PF00109 Beta-ketoacyl synthase, N-terminal domain Clocl_2660 PF16197 Ketoacyl-synthetase C-terminal extension Clocl_2660 PF00668 Condensation domain Clocl_2660 PF13193 AMP-binding enzyme C-terminal domain Clocl_2660 PF00550 Phosphopantetheine attachment site Clocl_2660 PF00202 Aminotransferase class-III Clocl_2660 PF00501 AMP-binding enzyme Clocl_2661 PF00550 Phosphopantetheine attachment site Clocl_2661 PF02801 Beta-ketoacyl synthase, C-terminal domain Clocl_2661 PF00109 Beta-ketoacyl synthase, N-terminal domain Clocl_2661 PF00668 Condensation domain Clocl_2661 PF13193 AMP-binding enzyme C-terminal domain Clocl_2661 PF16197 Ketoacyl-synthetase C-terminal extension Clocl_2661 PF00202 Aminotransferase class-III Clocl_2661 PF00501 AMP-binding enzyme Clocl_2663 PF00550 Phosphopantetheine attachment site Clocl_2663 PF16197 Ketoacyl-synthetase C-terminal extension Clocl_2663 PF00109 Beta-ketoacyl synthase, N-terminal domain Clocl_2663 PF02801 Beta-ketoacyl synthase, C-terminal domain Clocl_2663 PF08659 KR domain Clocl_2663 PF14765 Polyketide synthase dehydratase Clocl_2663 PF08242 Methyltransferase domain Clocl_2664 PF00698 Acyl transferase domain Clocl_2665 PF02801 Beta-ketoacyl synthase, C-terminal domain Clocl_2665 PF00550 Phosphopantetheine attachment site Clocl_2665 PF00501 AMP-binding enzyme Clocl_2665 PF16197 Ketoacyl-synthetase C-terminal extension Clocl_2665 PF00668 Condensation domain Clocl_2665 PF13193 AMP-binding enzyme C-terminal domain Clocl_2665 PF00202 Aminotransferase class-III Clocl_2665 PF00109 Beta-ketoacyl synthase, N-terminal domain Clocl_2668 PF05593 RHS Repeat Clocl_2680 PF01797 Transposase IS200 like Clocl_2683 PF05717 IS66 Orf2 like protein Clocl_2684 PF01527 Transposase Clocl_2687 PF13817 IS66 C-terminal element Clocl_2687 PF13005 zinc-finger binding domain of transposase IS66 Clocl_2687 PF03050 Transposase IS66 family Clocl_2687 PF13007 Transposase C of IS166 homeodomain Clocl_2688 PF05717 IS66 Orf2 like protein Clocl_2691 PF05593 RHS Repeat Clocl_2695 PF13005 zinc-finger binding domain of transposase IS66 Clocl_2695 PF13007 Transposase C of IS166 homeodomain Clocl_2695 PF13817 IS66 C-terminal element Clocl_2695 PF03050 Transposase IS66 family Clocl_2696 PF05717 IS66 Orf2 like protein Clocl_2698 PF05593 RHS Repeat Clocl_2699 PF00872 Transposase, Mutator family Clocl_2705 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2706 PF00005 ABC transporter Clocl_2710 PF01208 Uroporphyrinogen decarboxylase (URO-D) Clocl_2711 PF02607 B12 binding domain Clocl_2711 PF02310 B12 binding domain Clocl_2719 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clocl_2720 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clocl_2720 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clocl_2722 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clocl_2723 PF00155 Aminotransferase class I and II Clocl_2724 PF14535 AMP-binding enzyme C-terminal domain Clocl_2724 PF00501 AMP-binding enzyme Clocl_2725 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_2726 PF09383 NIL domain Clocl_2726 PF00005 ABC transporter Clocl_2727 PF03180 NLPA lipoprotein Clocl_2729 PF01208 Uroporphyrinogen decarboxylase (URO-D) Clocl_2730 PF00155 Aminotransferase class I and II Clocl_2731 PF02540 NAD synthase Clocl_2732 PF02082 Transcriptional regulator Clocl_2738 PF13411 MerR HTH family regulatory protein Clocl_2738 PF07739 TipAS antibiotic-recognition domain Clocl_2742 PF13936 Helix-turn-helix domain Clocl_2743 PF00872 Transposase, Mutator family Clocl_2744 PF02371 Transposase IS116/IS110/IS902 family Clocl_2744 PF01548 Transposase Clocl_2745 PF06452 Carbohydrate family 9 binding domain-like Clocl_2745 PF02018 Carbohydrate binding domain Clocl_2745 PF00395 S-layer homology domain Clocl_2745 PF00331 Glycosyl hydrolase family 10 Clocl_2746 PF00756 Putative esterase Clocl_2746 PF00404 Dockerin type I domain Clocl_2746 PF03422 Carbohydrate binding module (family 6) Clocl_2746 PF00331 Glycosyl hydrolase family 10 Clocl_2747 PF07691 PA14 domain Clocl_2747 PF12791 Anti-sigma factor N-terminus Clocl_2748 PF04542 Sigma-70 region 2 Clocl_2750 PF07478 D-ala D-ala ligase C-terminus Clocl_2750 PF01820 D-ala D-ala ligase N-terminus Clocl_2753 PF04239 Protein of unknown function (DUF421) Clocl_2755 PF00391 PEP-utilising enzyme, mobile domain Clocl_2755 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Clocl_2755 PF02896 PEP-utilising enzyme, TIM barrel domain Clocl_2756 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clocl_2756 PF03129 Anticodon binding domain Clocl_2757 PF04127 DNA / pantothenate metabolism flavoprotein Clocl_2757 PF02441 Flavoprotein Clocl_2758 PF01192 RNA polymerase Rpb6 Clocl_2759 PF00625 Guanylate kinase Clocl_2760 PF04025 Domain of unknown function (DUF370) Clocl_2761 PF03755 YicC-like family, N-terminal region Clocl_2761 PF08340 Domain of unknown function (DUF1732) Clocl_2763 PF00722 Glycosyl hydrolases family 16 Clocl_2763 PF00404 Dockerin type I domain Clocl_2764 PF00072 Response regulator receiver domain Clocl_2765 PF04452 RNA methyltransferase Clocl_2767 PF00226 DnaJ domain Clocl_2767 PF01556 DnaJ C terminal domain Clocl_2767 PF00684 DnaJ central domain Clocl_2768 PF00012 Hsp70 protein Clocl_2769 PF01025 GrpE Clocl_2770 PF01628 HrcA protein C terminal domain Clocl_2771 PF06969 HemN C-terminal domain Clocl_2771 PF04055 Radical SAM superfamily Clocl_2772 PF00679 Elongation factor G C-terminus Clocl_2772 PF06421 GTP-binding protein LepA C-terminus Clocl_2772 PF00009 Elongation factor Tu GTP binding domain Clocl_2772 PF03144 Elongation factor Tu domain 2 Clocl_2773 PF03009 Glycerophosphoryl diester phosphodiesterase family Clocl_2778 PF10502 Signal peptidase, peptidase S26 Clocl_2779 PF02938 GAD domain Clocl_2779 PF00152 tRNA synthetases class II (D, K and N) Clocl_2779 PF01336 OB-fold nucleic acid binding domain Clocl_2780 PF03129 Anticodon binding domain Clocl_2780 PF13393 Histidyl-tRNA synthetase Clocl_2781 PF04055 Radical SAM superfamily Clocl_2782 PF00753 Metallo-beta-lactamase superfamily Clocl_2783 PF02580 D-Tyr-tRNA(Tyr) deacylase Clocl_2784 PF04607 Region found in RelA / SpoT proteins Clocl_2784 PF02824 TGS domain Clocl_2784 PF13291 ACT domain Clocl_2785 PF00156 Phosphoribosyl transferase domain Clocl_2786 PF01368 DHH family Clocl_2786 PF17768 RecJ OB domain Clocl_2786 PF02272 DHHA1 domain Clocl_2786 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Clocl_2788 PF01797 Transposase IS200 like Clocl_2790 PF01165 Ribosomal protein S21 Clocl_2791 PF12419 SNF2 Helicase protein Clocl_2791 PF00271 Helicase conserved C-terminal domain Clocl_2791 PF00176 SNF2 family N-terminal domain Clocl_2792 PF02397 Bacterial sugar transferase Clocl_2797 PF12791 Anti-sigma factor N-terminus Clocl_2798 PF04542 Sigma-70 region 2 Clocl_2814 PF13439 Glycosyltransferase Family 4 Clocl_2814 PF00534 Glycosyl transferases group 1 Clocl_2815 PF00535 Glycosyl transferase family 2 Clocl_2817 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Clocl_2817 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Clocl_2817 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Clocl_2818 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 Clocl_2822 PF02397 Bacterial sugar transferase Clocl_2823 PF00872 Transposase, Mutator family Clocl_2826 PF00535 Glycosyl transferase family 2 Clocl_2828 PF13439 Glycosyltransferase Family 4 Clocl_2828 PF00534 Glycosyl transferases group 1 Clocl_2830 PF00483 Nucleotidyl transferase Clocl_2831 PF04321 RmlD substrate binding domain Clocl_2832 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Clocl_2833 PF13614 AAA domain Clocl_2836 PF00395 S-layer homology domain Clocl_2836 PF00963 Cohesin domain Clocl_2837 PF01230 HIT domain Clocl_2838 PF02272 DHHA1 domain Clocl_2838 PF01411 tRNA synthetases class II (A) Clocl_2838 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clocl_2839 PF01594 AI-2E family transporter Clocl_2843 PF12791 Anti-sigma factor N-terminus Clocl_2843 PF00942 Cellulose binding domain Clocl_2850 PF02371 Transposase IS116/IS110/IS902 family Clocl_2850 PF01548 Transposase Clocl_2853 PF00437 Type II/IV secretion system protein Clocl_2856 PF13581 Histidine kinase-like ATPase domain Clocl_2857 PF04055 Radical SAM superfamily Clocl_2857 PF02310 B12 binding domain Clocl_2858 PF00768 D-alanyl-D-alanine carboxypeptidase Clocl_2858 PF07943 Penicillin-binding protein 5, C-terminal domain Clocl_2861 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clocl_2864 PF02080 TrkA-C domain Clocl_2864 PF02254 TrkA-N domain Clocl_2865 PF04239 Protein of unknown function (DUF421) Clocl_2870 PF00483 Nucleotidyl transferase Clocl_2871 PF00483 Nucleotidyl transferase Clocl_2872 PF00072 Response regulator receiver domain Clocl_2872 PF12833 Helix-turn-helix domain Clocl_2873 PF00462 Glutaredoxin Clocl_2877 PF01479 S4 domain Clocl_2877 PF00849 RNA pseudouridylate synthase Clocl_2878 PF01189 16S rRNA methyltransferase RsmB/F Clocl_2878 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Clocl_2878 PF17126 RsmF rRNA methyltransferase first C-terminal domain Clocl_2879 PF02743 Cache domain Clocl_2879 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_2879 PF00672 HAMP domain Clocl_2880 PF12706 Beta-lactamase superfamily domain Clocl_2882 PF00300 Histidine phosphatase superfamily (branch 1) Clocl_2883 PF02654 Cobalamin-5-phosphate synthase Clocl_2884 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Clocl_2885 PF03186 CobD/Cbib protein Clocl_2886 PF13840 ACT domain Clocl_2886 PF00696 Amino acid kinase family Clocl_2887 PF00742 Homoserine dehydrogenase Clocl_2887 PF01842 ACT domain Clocl_2887 PF03447 Homoserine dehydrogenase, NAD binding domain Clocl_2889 PF01966 HD domain Clocl_2890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Clocl_2890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Clocl_2891 PF00072 Response regulator receiver domain Clocl_2892 PF00291 Pyridoxal-phosphate dependent enzyme Clocl_2892 PF14821 Threonine synthase N terminus Clocl_2893 PF01734 Patatin-like phospholipase Clocl_2896 PF08271 TFIIB zinc-binding Clocl_2901 PF00694 Aconitase C-terminal domain Clocl_2902 PF00330 Aconitase family (aconitate hydratase) Clocl_2905 PF00012 Hsp70 protein Clocl_2906 PF17746 SfsA N-terminal OB domain Clocl_2906 PF03749 Sugar fermentation stimulation protein RE domain Clocl_2908 PF00881 Nitroreductase family Clocl_2909 PF00881 Nitroreductase family Clocl_2911 PF02742 Iron dependent repressor, metal binding and dimerisation domain Clocl_2911 PF01325 Iron dependent repressor, N-terminal DNA binding domain Clocl_2919 PF02915 Rubrerythrin Clocl_2920 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Clocl_2931 PF17191 RecG wedge domain Clocl_2931 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Clocl_2931 PF00270 DEAD/DEAH box helicase Clocl_2938 PF00464 Serine hydroxymethyltransferase Clocl_2944 PF00963 Cohesin domain Clocl_2944 PF00395 S-layer homology domain Clocl_2948 PF00665 Integrase core domain Clocl_2949 PF00665 Integrase core domain Clocl_2950 PF08721 TnsA endonuclease C terminal Clocl_2950 PF08722 TnsA endonuclease N terminal Clocl_2957 PF01695 IstB-like ATP binding protein Clocl_2959 PF02371 Transposase IS116/IS110/IS902 family Clocl_2959 PF01548 Transposase Clocl_2962 PF00872 Transposase, Mutator family Clocl_2964 PF00872 Transposase, Mutator family Clocl_2971 PF03773 Predicted permease Clocl_2972 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clocl_2973 PF01758 Sodium Bile acid symporter family Clocl_2974 PF01022 Bacterial regulatory protein, arsR family Clocl_2979 PF01380 SIS domain Clocl_2980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Clocl_2980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Clocl_2980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Clocl_2980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Clocl_2983 PF02457 DisA bacterial checkpoint controller nucleotide-binding Clocl_2985 PF01871 AMMECR1 Clocl_2985 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Clocl_2988 PF04023 FeoA domain Clocl_2988 PF07664 Ferrous iron transport protein B C terminus Clocl_2988 PF17910 FeoB cytosolic helical domain Clocl_2988 PF02421 Ferrous iron transport protein B Clocl_2988 PF07670 Nucleoside recognition Clocl_2992 PF06153 Cyclic-di-AMP receptor Clocl_2993 PF07943 Penicillin-binding protein 5, C-terminal domain Clocl_2993 PF00768 D-alanyl-D-alanine carboxypeptidase Clocl_2998 PF08141 Small acid-soluble spore protein H family Clocl_3001 PF02011 Glycosyl hydrolase family 48 Clocl_3001 PF00759 Glycosyl hydrolase family 9 Clocl_3001 PF00942 Cellulose binding domain Clocl_3004 PF02614 Glucuronate isomerase Clocl_3006 PF00963 Cohesin domain Clocl_3006 PF00395 S-layer homology domain Clocl_3010 PF01979 Amidohydrolase family Clocl_3011 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Clocl_3011 PF05221 S-adenosyl-L-homocysteine hydrolase Clocl_3012 PF01048 Phosphorylase superfamily Clocl_3014 PF04293 SpoVR like protein Clocl_3015 PF04285 Protein of unknown function (DUF444) Clocl_3016 PF06798 PrkA serine protein kinase C-terminal domain Clocl_3016 PF08298 PrkA AAA domain Clocl_3021 PF01925 Sulfite exporter TauE/SafE Clocl_3022 PF02617 ATP-dependent Clp protease adaptor protein ClpS Clocl_3023 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_3023 PF07724 AAA domain (Cdc48 subfamily) Clocl_3023 PF17871 AAA lid domain Clocl_3023 PF10431 C-terminal, D2-small domain, of ClpB protein Clocl_3023 PF02861 Clp amino terminal domain, pathogenicity island component Clocl_3024 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Clocl_3028 PF06165 Glycosyltransferase family 36 Clocl_3028 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Clocl_3028 PF10091 Putative glucoamylase Clocl_3029 PF02927 Cellulase N-terminal ig-like domain Clocl_3029 PF00759 Glycosyl hydrolase family 9 Clocl_3029 PF00404 Dockerin type I domain Clocl_3030 PF00588 SpoU rRNA Methylase family Clocl_3030 PF08032 RNA 2'-O ribose methyltransferase substrate binding Clocl_3031 PF00453 Ribosomal protein L20 Clocl_3032 PF01632 Ribosomal protein L35 Clocl_3033 PF05198 Translation initiation factor IF-3, N-terminal domain Clocl_3033 PF00707 Translation initiation factor IF-3, C-terminal domain Clocl_3034 PF13936 Helix-turn-helix domain Clocl_3035 PF02511 Thymidylate synthase complementing protein Clocl_3036 PF02824 TGS domain Clocl_3036 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clocl_3036 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clocl_3036 PF03129 Anticodon binding domain Clocl_3038 PF00759 Glycosyl hydrolase family 9 Clocl_3038 PF00942 Cellulose binding domain Clocl_3042 PF07943 Penicillin-binding protein 5, C-terminal domain Clocl_3042 PF00768 D-alanyl-D-alanine carboxypeptidase Clocl_3044 PF00872 Transposase, Mutator family Clocl_3050 PF00005 ABC transporter Clocl_3052 PF00872 Transposase, Mutator family Clocl_3055 PF01966 HD domain Clocl_3056 PF01467 Cytidylyltransferase-like Clocl_3057 PF00480 ROK family Clocl_3058 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Clocl_3058 PF04616 Glycosyl hydrolases family 43 Clocl_3061 PF16363 GDP-mannose 4,6 dehydratase Clocl_3066 PF02843 Phosphoribosylglycinamide synthetase, C domain Clocl_3066 PF02844 Phosphoribosylglycinamide synthetase, N domain Clocl_3066 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Clocl_3067 PF02142 MGS-like domain Clocl_3067 PF01808 AICARFT/IMPCHase bienzyme Clocl_3068 PF00551 Formyl transferase Clocl_3069 PF00586 AIR synthase related protein, N-terminal domain Clocl_3069 PF02769 AIR synthase related protein, C-terminal domain Clocl_3070 PF13537 Glutamine amidotransferase domain Clocl_3070 PF00156 Phosphoribosyl transferase domain Clocl_3071 PF00731 AIR carboxylase Clocl_3072 PF00860 Permease family Clocl_3075 PF01797 Transposase IS200 like Clocl_3081 PF13936 Helix-turn-helix domain Clocl_3083 PF00117 Glutamine amidotransferase class-I Clocl_3083 PF00958 GMP synthase C terminal domain Clocl_3083 PF02540 NAD synthase Clocl_3085 PF01969 Protein of unknown function DUF111 Clocl_3086 PF00731 AIR carboxylase Clocl_3089 PF00472 RF-1 domain Clocl_3089 PF03462 PCRF domain Clocl_3093 PF00155 Aminotransferase class I and II Clocl_3094 PF01037 Lrp/AsnC ligand binding domain Clocl_3096 PF00085 Thioredoxin Clocl_3097 PF02583 Metal-sensitive transcriptional repressor Clocl_3100 PF11897 Protein of unknown function (DUF3417) Clocl_3100 PF00343 Carbohydrate phosphorylase Clocl_3102 PF00682 HMGL-like Clocl_3103 PF01522 Polysaccharide deacetylase Clocl_3103 PF03422 Carbohydrate binding module (family 6) Clocl_3103 PF00457 Glycosyl hydrolases family 11 Clocl_3104 PF01869 BadF/BadG/BcrA/BcrD ATPase family Clocl_3107 PF10502 Signal peptidase, peptidase S26 Clocl_3108 PF01116 Fructose-bisphosphate aldolase class-II Clocl_3109 PF00365 Phosphofructokinase Clocl_3110 PF01228 Glycine radical Clocl_3110 PF02901 Pyruvate formate lyase-like Clocl_3111 PF04055 Radical SAM superfamily Clocl_3113 PF12791 Anti-sigma factor N-terminus Clocl_3113 PF07691 PA14 domain Clocl_3120 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Clocl_3120 PF00437 Type II/IV secretion system protein Clocl_3125 PF00639 PPIC-type PPIASE domain Clocl_3127 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_3127 PF07724 AAA domain (Cdc48 subfamily) Clocl_3127 PF17871 AAA lid domain Clocl_3127 PF02861 Clp amino terminal domain, pathogenicity island component Clocl_3127 PF10431 C-terminal, D2-small domain, of ClpB protein Clocl_3128 PF17760 UvrA interaction domain Clocl_3128 PF17755 UvrA DNA-binding domain Clocl_3129 PF00271 Helicase conserved C-terminal domain Clocl_3129 PF02151 UvrB/uvrC motif Clocl_3129 PF12344 Ultra-violet resistance protein B Clocl_3129 PF17757 UvrB interaction domain Clocl_3129 PF04851 Type III restriction enzyme, res subunit Clocl_3132 PF00404 Dockerin type I domain Clocl_3132 PF02156 Glycosyl hydrolase family 26 Clocl_3132 PF03425 Carbohydrate binding domain (family 11) Clocl_3132 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_3135 PF00989 PAS fold Clocl_3135 PF16736 Single Cache-like Clocl_3135 PF00512 His Kinase A (phospho-acceptor) domain Clocl_3135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3136 PF00072 Response regulator receiver domain Clocl_3136 PF00486 Transcriptional regulatory protein, C terminal Clocl_3140 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_3140 PF17862 AAA+ lid domain Clocl_3140 PF06480 FtsH Extracellular Clocl_3140 PF01434 Peptidase family M41 Clocl_3147 PF00404 Dockerin type I domain Clocl_3150 PF02310 B12 binding domain Clocl_3150 PF04055 Radical SAM superfamily Clocl_3161 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_3161 PF01348 Type II intron maturase Clocl_3163 PF01695 IstB-like ATP binding protein Clocl_3164 PF01527 Transposase Clocl_3165 PF05717 IS66 Orf2 like protein Clocl_3169 PF05593 RHS Repeat Clocl_3172 PF03050 Transposase IS66 family Clocl_3172 PF13817 IS66 C-terminal element Clocl_3172 PF13007 Transposase C of IS166 homeodomain Clocl_3172 PF13005 zinc-finger binding domain of transposase IS66 Clocl_3173 PF05717 IS66 Orf2 like protein Clocl_3174 PF01527 Transposase Clocl_3175 PF00872 Transposase, Mutator family Clocl_3179 PF00005 ABC transporter Clocl_3184 PF06445 GyrI-like small molecule binding domain Clocl_3184 PF12833 Helix-turn-helix domain Clocl_3203 PF05717 IS66 Orf2 like protein Clocl_3204 PF01527 Transposase Clocl_3210 PF00080 Copper/zinc superoxide dismutase (SODC) Clocl_3211 PF00521 DNA gyrase/topoisomerase IV, subunit A Clocl_3211 PF03989 DNA gyrase C-terminal domain, beta-propeller Clocl_3212 PF01751 Toprim domain Clocl_3212 PF00204 DNA gyrase B Clocl_3212 PF00986 DNA gyrase B subunit, carboxyl terminus Clocl_3212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3216 PF00188 Cysteine-rich secretory protein family Clocl_3222 PF05504 Spore germination B3/ GerAC like, C-terminal Clocl_3223 PF03323 Bacillus/Clostridium GerA spore germination protein Clocl_3224 PF00266 Aminotransferase class-V Clocl_3225 PF02632 BioY family Clocl_3226 PF00881 Nitroreductase family Clocl_3234 PF01209 ubiE/COQ5 methyltransferase family Clocl_3237 PF01548 Transposase Clocl_3237 PF02371 Transposase IS116/IS110/IS902 family Clocl_3238 PF03190 Protein of unknown function, DUF255 Clocl_3239 PF00704 Glycosyl hydrolases family 18 Clocl_3239 PF00041 Fibronectin type III domain Clocl_3240 PF06733 DEAD_2 Clocl_3240 PF13307 Helicase C-terminal domain Clocl_3242 PF00403 Heavy-metal-associated domain Clocl_3243 PF01022 Bacterial regulatory protein, arsR family Clocl_3244 PF00232 Glycosyl hydrolase family 1 Clocl_3245 PF00072 Response regulator receiver domain Clocl_3245 PF01966 HD domain Clocl_3247 PF02638 Glycosyl hydrolase-like 10 Clocl_3252 PF01894 Uncharacterised protein family UPF0047 Clocl_3253 PF00759 Glycosyl hydrolase family 9 Clocl_3253 PF00942 Cellulose binding domain Clocl_3255 PF00759 Glycosyl hydrolase family 9 Clocl_3255 PF00942 Cellulose binding domain Clocl_3262 PF00317 Ribonucleotide reductase, all-alpha domain Clocl_3262 PF02867 Ribonucleotide reductase, barrel domain Clocl_3262 PF03477 ATP cone domain Clocl_3270 PF03167 Uracil DNA glycosylase superfamily Clocl_3271 PF04055 Radical SAM superfamily Clocl_3272 PF01242 6-pyruvoyl tetrahydropterin synthase Clocl_3273 PF06508 Queuosine biosynthesis protein QueC Clocl_3274 PF01869 BadF/BadG/BcrA/BcrD ATPase family Clocl_3277 PF03816 Cell envelope-related transcriptional attenuator domain Clocl_3278 PF00155 Aminotransferase class I and II Clocl_3279 PF01678 Diaminopimelate epimerase Clocl_3283 PF00535 Glycosyl transferase family 2 Clocl_3289 PF00709 Adenylosuccinate synthetase Clocl_3291 PF05681 Fumarate hydratase (Fumerase) Clocl_3291 PF05683 Fumarase C-terminus Clocl_3292 PF05681 Fumarate hydratase (Fumerase) Clocl_3294 PF00216 Bacterial DNA-binding protein Clocl_3295 PF08769 Sporulation initiation factor Spo0A C terminal Clocl_3295 PF00072 Response regulator receiver domain Clocl_3296 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clocl_3297 PF04397 LytTr DNA-binding domain Clocl_3297 PF00072 Response regulator receiver domain Clocl_3298 PF01170 Putative RNA methylase family UPF0020 Clocl_3298 PF02926 THUMP domain Clocl_3303 PF00395 S-layer homology domain Clocl_3303 PF00963 Cohesin domain Clocl_3304 PF00963 Cohesin domain Clocl_3304 PF00395 S-layer homology domain Clocl_3305 PF00963 Cohesin domain Clocl_3305 PF00395 S-layer homology domain Clocl_3306 PF00942 Cellulose binding domain Clocl_3306 PF03442 Carbohydrate binding domain X2 Clocl_3306 PF00963 Cohesin domain Clocl_3307 PF13419 Haloacid dehalogenase-like hydrolase Clocl_3308 PF00905 Penicillin binding protein transpeptidase domain Clocl_3309 PF01098 Cell cycle protein Clocl_3311 PF12773 Double zinc ribbon Clocl_3311 PF00498 FHA domain Clocl_3312 PF00072 Response regulator receiver domain Clocl_3313 PF01694 Rhomboid family Clocl_3318 PF00005 ABC transporter Clocl_3320 PF00672 HAMP domain Clocl_3320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3320 PF00512 His Kinase A (phospho-acceptor) domain Clocl_3320 PF13426 PAS domain Clocl_3321 PF00486 Transcriptional regulatory protein, C terminal Clocl_3321 PF00072 Response regulator receiver domain Clocl_3322 PF00664 ABC transporter transmembrane region Clocl_3322 PF00005 ABC transporter Clocl_3323 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Clocl_3324 PF00437 Type II/IV secretion system protein Clocl_3325 PF00056 lactate/malate dehydrogenase, NAD binding domain Clocl_3325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Clocl_3326 PF00390 Malic enzyme, N-terminal domain Clocl_3326 PF03949 Malic enzyme, NAD binding domain Clocl_3327 PF13472 GDSL-like Lipase/Acylhydrolase family Clocl_3330 PF00488 MutS domain V Clocl_3330 PF05190 MutS family domain IV Clocl_3330 PF01624 MutS domain I Clocl_3330 PF05188 MutS domain II Clocl_3330 PF05192 MutS domain III Clocl_3331 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Clocl_3331 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Clocl_3332 PF01272 Transcription elongation factor, GreA/GreB, C-term Clocl_3332 PF03449 Transcription elongation factor, N-terminal Clocl_3333 PF00561 alpha/beta hydrolase fold Clocl_3333 PF08386 TAP-like protein Clocl_3334 PF00963 Cohesin domain Clocl_3334 PF00395 S-layer homology domain Clocl_3339 PF08281 Sigma-70, region 4 Clocl_3339 PF04542 Sigma-70 region 2 Clocl_3341 PF00664 ABC transporter transmembrane region Clocl_3341 PF00005 ABC transporter Clocl_3342 PF00664 ABC transporter transmembrane region Clocl_3342 PF00005 ABC transporter Clocl_3343 PF01047 MarR family Clocl_3344 PF00285 Citrate synthase, C-terminal domain Clocl_3345 PF03692 Putative zinc- or iron-chelating domain Clocl_3346 PF00156 Phosphoribosyl transferase domain Clocl_3346 PF13537 Glutamine amidotransferase domain Clocl_3348 PF01636 Phosphotransferase enzyme family Clocl_3349 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Clocl_3349 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Clocl_3349 PF02142 MGS-like domain Clocl_3352 PF04308 Ribonuclease H-like Clocl_3354 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_3354 PF00672 HAMP domain Clocl_3354 PF02203 Tar ligand binding domain homologue Clocl_3357 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clocl_3357 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clocl_3357 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_3359 PF08281 Sigma-70, region 4 Clocl_3359 PF04542 Sigma-70 region 2 Clocl_3360 PF01545 Cation efflux family Clocl_3360 PF16916 Dimerisation domain of Zinc Transporter Clocl_3361 PF03422 Carbohydrate binding module (family 6) Clocl_3361 PF00457 Glycosyl hydrolases family 11 Clocl_3361 PF01522 Polysaccharide deacetylase Clocl_3362 PF00989 PAS fold Clocl_3362 PF00512 His Kinase A (phospho-acceptor) domain Clocl_3362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3362 PF16736 Single Cache-like Clocl_3363 PF00486 Transcriptional regulatory protein, C terminal Clocl_3363 PF00072 Response regulator receiver domain Clocl_3364 PF02915 Rubrerythrin Clocl_3365 PF02673 Bacitracin resistance protein BacA Clocl_3366 PF01865 Protein of unknown function DUF47 Clocl_3367 PF01384 Phosphate transporter family Clocl_3368 PF10086 YhfC intramembrane metalloprotease Clocl_3382 PF13361 UvrD-like helicase C-terminal domain Clocl_3382 PF00580 UvrD/REP helicase N-terminal domain Clocl_3382 PF12705 PD-(D/E)XK nuclease superfamily Clocl_3383 PF12705 PD-(D/E)XK nuclease superfamily Clocl_3387 PF00005 ABC transporter Clocl_3387 PF00664 ABC transporter transmembrane region Clocl_3387 PF03412 Peptidase C39 family Clocl_3389 PF01797 Transposase IS200 like Clocl_3390 PF00501 AMP-binding enzyme Clocl_3390 PF13193 AMP-binding enzyme C-terminal domain Clocl_3391 PF01641 SelR domain Clocl_3391 PF01625 Peptide methionine sulfoxide reductase Clocl_3394 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Clocl_3394 PF02806 Alpha amylase, C-terminal all-beta domain Clocl_3394 PF00128 Alpha amylase, catalytic domain Clocl_3395 PF00404 Dockerin type I domain Clocl_3395 PF00942 Cellulose binding domain Clocl_3395 PF00963 Cohesin domain Clocl_3396 PF00501 AMP-binding enzyme Clocl_3398 PF00672 HAMP domain Clocl_3398 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_3398 PF02203 Tar ligand binding domain homologue Clocl_3399 PF01548 Transposase Clocl_3399 PF02371 Transposase IS116/IS110/IS902 family Clocl_3402 PF02743 Cache domain Clocl_3402 PF00672 HAMP domain Clocl_3402 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_3404 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clocl_3404 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clocl_3405 PF01266 FAD dependent oxidoreductase Clocl_3410 PF00535 Glycosyl transferase family 2 Clocl_3411 PF01266 FAD dependent oxidoreductase Clocl_3414 PF00210 Ferritin-like domain Clocl_3417 PF00009 Elongation factor Tu GTP binding domain Clocl_3418 PF01507 Phosphoadenosine phosphosulfate reductase family Clocl_3419 PF01507 Phosphoadenosine phosphosulfate reductase family Clocl_3420 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Clocl_3420 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Clocl_3421 PF01053 Cys/Met metabolism PLP-dependent enzyme Clocl_3422 PF00563 EAL domain Clocl_3422 PF00990 Diguanylate cyclase, GGDEF domain Clocl_3422 PF03707 Bacterial signalling protein N terminal repeat Clocl_3429 PF08279 HTH domain Clocl_3429 PF13280 WYL domain Clocl_3432 PF03965 Penicillinase repressor Clocl_3447 PF07228 Stage II sporulation protein E (SpoIIE) Clocl_3451 PF01909 Nucleotidyltransferase domain Clocl_3451 PF13427 Domain of unknown function (DUF4111) Clocl_3466 PF01695 IstB-like ATP binding protein Clocl_3467 PF08281 Sigma-70, region 4 Clocl_3467 PF00665 Integrase core domain Clocl_3484 PF03448 MgtE intracellular N domain Clocl_3484 PF00571 CBS domain Clocl_3484 PF01769 Divalent cation transporter Clocl_3487 PF00672 HAMP domain Clocl_3487 PF02743 Cache domain Clocl_3487 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_3489 PF06445 GyrI-like small molecule binding domain Clocl_3489 PF12833 Helix-turn-helix domain Clocl_3494 PF03176 MMPL family Clocl_3496 PF00692 dUTPase Clocl_3503 PF04101 Glycosyltransferase family 28 C-terminal domain Clocl_3509 PF02743 Cache domain Clocl_3509 PF00672 HAMP domain Clocl_3509 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_3510 PF13936 Helix-turn-helix domain Clocl_3513 PF01548 Transposase Clocl_3513 PF02371 Transposase IS116/IS110/IS902 family Clocl_3515 PF13302 Acetyltransferase (GNAT) domain Clocl_3519 PF00892 EamA-like transporter family Clocl_3521 PF01501 Glycosyl transferase family 8 Clocl_3521 PF08437 Glycosyl transferase family 8 C-terminal Clocl_3523 PF08543 Phosphomethylpyrimidine kinase Clocl_3523 PF02581 Thiamine monophosphate synthase Clocl_3524 PF13419 Haloacid dehalogenase-like hydrolase Clocl_3525 PF01964 Radical SAM ThiC family Clocl_3525 PF02581 Thiamine monophosphate synthase Clocl_3525 PF13667 ThiC-associated domain Clocl_3526 PF02110 Hydroxyethylthiazole kinase family Clocl_3528 PF17284 Spermidine synthase tetramerisation domain Clocl_3536 PF00005 ABC transporter Clocl_3537 PF00512 His Kinase A (phospho-acceptor) domain Clocl_3537 PF07689 KaiB domain Clocl_3537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3538 PF00072 Response regulator receiver domain Clocl_3538 PF00486 Transcriptional regulatory protein, C terminal Clocl_3542 PF02796 Helix-turn-helix domain of resolvase Clocl_3542 PF00239 Resolvase, N terminal domain Clocl_3549 PF01790 Prolipoprotein diacylglyceryl transferase Clocl_3553 PF02417 Chromate transporter Clocl_3556 PF00005 ABC transporter Clocl_3558 PF10609 NUBPL iron-transfer P-loop NTPase Clocl_3560 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clocl_3563 PF02224 Cytidylate kinase Clocl_3565 PF01592 NifU-like N terminal domain Clocl_3566 PF02001 Protein of unknown function DUF134 Clocl_3568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3568 PF17203 Single cache domain 3 Clocl_3568 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Clocl_3569 PF04397 LytTr DNA-binding domain Clocl_3569 PF00072 Response regulator receiver domain Clocl_3576 PF01032 FecCD transport family Clocl_3578 PF02570 Precorrin-8X methylmutase Clocl_3579 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Clocl_3579 PF12557 Cob(I)alamin adenosyltransferase N terminal Clocl_3580 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clocl_3580 PF07685 CobB/CobQ-like glutamine amidotransferase domain Clocl_3581 PF00155 Aminotransferase class I and II Clocl_3582 PF03186 CobD/Cbib protein Clocl_3583 PF07685 CobB/CobQ-like glutamine amidotransferase domain Clocl_3583 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clocl_3584 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clocl_3586 PF00202 Aminotransferase class-III Clocl_3587 PF00490 Delta-aminolevulinic acid dehydratase Clocl_3588 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clocl_3588 PF02602 Uroporphyrinogen-III synthase HemD Clocl_3589 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Clocl_3589 PF03900 Porphobilinogen deaminase, C-terminal domain Clocl_3590 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Clocl_3590 PF01488 Shikimate / quinate 5-dehydrogenase Clocl_3591 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clocl_3592 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Clocl_3592 PF01488 Shikimate / quinate 5-dehydrogenase Clocl_3593 PF01890 Cobalamin synthesis G C-terminus Clocl_3593 PF11760 Cobalamin synthesis G N-terminal Clocl_3593 PF11761 Cobalamin biosynthesis central region Clocl_3594 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clocl_3595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clocl_3596 PF01888 CbiD Clocl_3597 PF00005 ABC transporter Clocl_3598 PF02361 Cobalt transport protein Clocl_3599 PF02553 Cobalt transport protein component CbiN Clocl_3600 PF01891 Cobalt uptake substrate-specific transmembrane region Clocl_3613 PF08281 Sigma-70, region 4 Clocl_3613 PF04542 Sigma-70 region 2 Clocl_3615 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_3619 PF11638 DnaA N-terminal domain Clocl_3619 PF00308 Bacterial dnaA protein Clocl_3619 PF08299 Bacterial dnaA protein helix-turn-helix Clocl_3620 PF00665 Integrase core domain Clocl_3622 PF18766 SWI2/SNF2 ATPase Clocl_3622 PF11867 Domain of unknown function (DUF3387) Clocl_3622 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Clocl_3623 PF01420 Type I restriction modification DNA specificity domain Clocl_3625 PF02384 N-6 DNA Methylase Clocl_3630 PF00512 His Kinase A (phospho-acceptor) domain Clocl_3630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3631 PF00486 Transcriptional regulatory protein, C terminal Clocl_3631 PF00072 Response regulator receiver domain Clocl_3634 PF13302 Acetyltransferase (GNAT) domain Clocl_3637 PF11638 DnaA N-terminal domain Clocl_3637 PF08299 Bacterial dnaA protein helix-turn-helix Clocl_3637 PF00308 Bacterial dnaA protein Clocl_3638 PF00665 Integrase core domain Clocl_3640 PF01555 DNA methylase Clocl_3641 PF00271 Helicase conserved C-terminal domain Clocl_3641 PF00176 SNF2 family N-terminal domain Clocl_3647 PF01527 Transposase Clocl_3649 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_3651 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_3653 PF04542 Sigma-70 region 2 Clocl_3653 PF08281 Sigma-70, region 4 Clocl_3656 PF13408 Recombinase zinc beta ribbon domain Clocl_3656 PF07508 Recombinase Clocl_3658 PF00239 Resolvase, N terminal domain Clocl_3658 PF02796 Helix-turn-helix domain of resolvase Clocl_3660 PF01510 N-acetylmuramoyl-L-alanine amidase Clocl_3660 PF01476 LysM domain Clocl_3660 PF01471 Putative peptidoglycan binding domain Clocl_3661 PF05105 Bacteriophage holin family Clocl_3678 PF00005 ABC transporter Clocl_3680 PF13493 Domain of unknown function (DUF4118) Clocl_3680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3680 PF02702 Osmosensitive K+ channel His kinase sensor domain Clocl_3680 PF00512 His Kinase A (phospho-acceptor) domain Clocl_3681 PF00486 Transcriptional regulatory protein, C terminal Clocl_3681 PF00072 Response regulator receiver domain Clocl_3682 PF00753 Metallo-beta-lactamase superfamily Clocl_3682 PF16123 Hydroxyacylglutathione hydrolase C-terminus Clocl_3687 PF01527 Transposase Clocl_3689 PF01609 Transposase DDE domain Clocl_3689 PF13808 DDE_Tnp_1-associated Clocl_3691 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_3693 PF01252 Signal peptidase (SPase) II Clocl_3694 PF00403 Heavy-metal-associated domain Clocl_3695 PF01022 Bacterial regulatory protein, arsR family Clocl_3697 PF07508 Recombinase Clocl_3697 PF13408 Recombinase zinc beta ribbon domain Clocl_3699 PF00239 Resolvase, N terminal domain Clocl_3699 PF02796 Helix-turn-helix domain of resolvase Clocl_3701 PF01510 N-acetylmuramoyl-L-alanine amidase Clocl_3701 PF01476 LysM domain Clocl_3701 PF01471 Putative peptidoglycan binding domain Clocl_3702 PF05105 Bacteriophage holin family Clocl_3717 PF00574 Clp protease Clocl_3718 PF04860 Phage portal protein Clocl_3719 PF03354 Phage Terminase Clocl_3726 PF01555 DNA methylase Clocl_3727 PF01555 DNA methylase Clocl_3736 PF02498 BRO family, N-terminal domain Clocl_3736 PF10548 P22AR C-terminal domain Clocl_3737 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Clocl_3737 PF01612 3'-5' exonuclease Clocl_3737 PF00476 DNA polymerase family A Clocl_3737 PF01367 5'-3' exonuclease, C-terminal SAM fold Clocl_3745 PF08281 Sigma-70, region 4 Clocl_3745 PF04542 Sigma-70 region 2 Clocl_3749 PF01938 TRAM domain Clocl_3749 PF05958 tRNA (Uracil-5-)-methyltransferase Clocl_3754 PF03960 ArsC family Clocl_3755 PF13739 Deacetylase PdaC Clocl_3755 PF11738 Protein of unknown function (DUF3298) Clocl_3756 PF08281 Sigma-70, region 4 Clocl_3756 PF04542 Sigma-70 region 2 Clocl_3758 PF00171 Aldehyde dehydrogenase family Clocl_3759 PF00465 Iron-containing alcohol dehydrogenase Clocl_3760 PF00753 Metallo-beta-lactamase superfamily Clocl_3760 PF16123 Hydroxyacylglutathione hydrolase C-terminus Clocl_3762 PF12102 Domain of unknown function (DUF3578) Clocl_3762 PF07728 AAA domain (dynein-related subfamily) Clocl_3765 PF00005 ABC transporter Clocl_3766 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_3767 PF00497 Bacterial extracellular solute-binding proteins, family 3 Clocl_3769 PF13443 Cro/C1-type HTH DNA-binding domain Clocl_3771 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Clocl_3771 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Clocl_3774 PF00497 Bacterial extracellular solute-binding proteins, family 3 Clocl_3775 PF00005 ABC transporter Clocl_3776 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_3777 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_3779 PF00872 Transposase, Mutator family Clocl_3783 PF03180 NLPA lipoprotein Clocl_3784 PF00528 Binding-protein-dependent transport system inner membrane component Clocl_3785 PF09383 NIL domain Clocl_3785 PF00005 ABC transporter Clocl_3786 PF02082 Transcriptional regulator Clocl_3788 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_3789 PF00148 Nitrogenase component 1 type Oxidoreductase Clocl_3792 PF01695 IstB-like ATP binding protein Clocl_3794 PF00872 Transposase, Mutator family Clocl_3796 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Clocl_3797 PF00005 ABC transporter Clocl_3801 PF03551 Transcriptional regulator PadR-like family Clocl_3806 PF01548 Transposase Clocl_3806 PF02371 Transposase IS116/IS110/IS902 family Clocl_3810 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clocl_3810 PF07685 CobB/CobQ-like glutamine amidotransferase domain Clocl_3811 PF13649 Methyltransferase domain Clocl_3812 PF13421 SPFH domain-Band 7 family Clocl_3813 PF01551 Peptidase family M23 Clocl_3816 PF00912 Transglycosylase Clocl_3816 PF00905 Penicillin binding protein transpeptidase domain Clocl_3818 PF12704 MacB-like periplasmic core domain Clocl_3818 PF02687 FtsX-like permease family Clocl_3820 PF00005 ABC transporter Clocl_3823 PF00696 Amino acid kinase family Clocl_3824 PF00188 Cysteine-rich secretory protein family Clocl_3832 PF00330 Aconitase family (aconitate hydratase) Clocl_3833 PF00285 Citrate synthase, C-terminal domain Clocl_3834 PF00392 Bacterial regulatory proteins, gntR family Clocl_3834 PF07729 FCD domain Clocl_3835 PF04286 Protein of unknown function (DUF445) Clocl_3838 PF13654 AAA domain Clocl_3838 PF05362 Lon protease (S16) C-terminal proteolytic domain Clocl_3840 PF00814 Glycoprotease family Clocl_3841 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Clocl_3842 PF13382 Adenine deaminase C-terminal domain Clocl_3842 PF01979 Amidohydrolase family Clocl_3845 PF00004 ATPase family associated with various cellular activities (AAA) Clocl_3845 PF17862 AAA+ lid domain Clocl_3845 PF01434 Peptidase family M41 Clocl_3852 PF00872 Transposase, Mutator family Clocl_3854 PF08000 Bacterial PH domain Clocl_3857 PF00380 Ribosomal protein S9/S16 Clocl_3858 PF00572 Ribosomal protein L13 Clocl_3859 PF01416 tRNA pseudouridine synthase Clocl_3860 PF00480 ROK family Clocl_3861 PF02361 Cobalt transport protein Clocl_3862 PF00005 ABC transporter Clocl_3863 PF05175 Methyltransferase small domain Clocl_3864 PF00005 ABC transporter Clocl_3865 PF01196 Ribosomal protein L17 Clocl_3866 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Clocl_3866 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Clocl_3866 PF01000 RNA polymerase Rpb3/RpoA insert domain Clocl_3867 PF00163 Ribosomal protein S4/S9 N-terminal domain Clocl_3867 PF01479 S4 domain Clocl_3868 PF00411 Ribosomal protein S11 Clocl_3869 PF00416 Ribosomal protein S13/S18 Clocl_3870 PF00444 Ribosomal protein L36 Clocl_3871 PF01176 Translation initiation factor 1A / IF-1 Clocl_3873 PF00557 Metallopeptidase family M24 Clocl_3874 PF05191 Adenylate kinase, active site lid Clocl_3875 PF00344 SecY translocase Clocl_3876 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Clocl_3877 PF00327 Ribosomal protein L30p/L7e Clocl_3878 PF03719 Ribosomal protein S5, C-terminal domain Clocl_3878 PF00333 Ribosomal protein S5, N-terminal domain Clocl_3879 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Clocl_3880 PF00347 Ribosomal protein L6 Clocl_3881 PF00410 Ribosomal protein S8 Clocl_3882 PF00253 Ribosomal protein S14p/S29e Clocl_3883 PF00281 Ribosomal protein L5 Clocl_3883 PF00673 ribosomal L5P family C-terminus Clocl_3884 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Clocl_3885 PF00238 Ribosomal protein L14p/L23e Clocl_3886 PF00366 Ribosomal protein S17 Clocl_3887 PF00831 Ribosomal L29 protein Clocl_3888 PF00252 Ribosomal protein L16p/L10e Clocl_3889 PF00189 Ribosomal protein S3, C-terminal domain Clocl_3889 PF07650 KH domain Clocl_3890 PF00237 Ribosomal protein L22p/L17e Clocl_3891 PF00203 Ribosomal protein S19 Clocl_3892 PF03947 Ribosomal Proteins L2, C-terminal domain Clocl_3892 PF00181 Ribosomal Proteins L2, RNA binding domain Clocl_3893 PF00276 Ribosomal protein L23 Clocl_3894 PF00573 Ribosomal protein L4/L1 family Clocl_3895 PF00297 Ribosomal protein L3 Clocl_3896 PF00338 Ribosomal protein S10p/S20e Clocl_3897 PF05154 TM2 domain Clocl_3902 PF01943 Polysaccharide biosynthesis protein Clocl_3902 PF14667 Polysaccharide biosynthesis C-terminal domain Clocl_3908 PF04542 Sigma-70 region 2 Clocl_3908 PF04539 Sigma-70 region 3 Clocl_3908 PF04545 Sigma-70, region 4 Clocl_3910 PF01740 STAS domain Clocl_3911 PF00152 tRNA synthetases class II (D, K and N) Clocl_3911 PF01336 OB-fold nucleic acid binding domain Clocl_3912 PF01272 Transcription elongation factor, GreA/GreB, C-term Clocl_3912 PF03449 Transcription elongation factor, N-terminal Clocl_3914 PF00704 Glycosyl hydrolases family 18 Clocl_3917 PF02018 Carbohydrate binding domain Clocl_3917 PF02927 Cellulase N-terminal ig-like domain Clocl_3917 PF00404 Dockerin type I domain Clocl_3917 PF00759 Glycosyl hydrolase family 9 Clocl_3918 PF00118 TCP-1/cpn60 chaperonin family Clocl_3919 PF00166 Chaperonin 10 Kd subunit Clocl_3920 PF17996 Carbohydrate esterase 2 N-terminal Clocl_3920 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_3920 PF00404 Dockerin type I domain Clocl_3920 PF00657 GDSL-like Lipase/Acylhydrolase Clocl_3922 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Clocl_3922 PF01502 Phosphoribosyl-AMP cyclohydrolase Clocl_3923 PF00977 Histidine biosynthesis protein Clocl_3924 PF00977 Histidine biosynthesis protein Clocl_3925 PF00117 Glutamine amidotransferase class-I Clocl_3926 PF01259 SAICAR synthetase Clocl_3927 PF00475 Imidazoleglycerol-phosphate dehydratase Clocl_3928 PF00155 Aminotransferase class I and II Clocl_3929 PF00815 Histidinol dehydrogenase Clocl_3930 PF01634 ATP phosphoribosyltransferase Clocl_3931 PF13393 Histidyl-tRNA synthetase Clocl_3932 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_3932 PF00404 Dockerin type I domain Clocl_3937 PF00440 Bacterial regulatory proteins, tetR family Clocl_3940 PF00580 UvrD/REP helicase N-terminal domain Clocl_3940 PF13361 UvrD-like helicase C-terminal domain Clocl_3941 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Clocl_3941 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Clocl_3942 PF00543 Nitrogen regulatory protein P-II Clocl_3943 PF00909 Ammonium Transporter Family Clocl_3945 PF00120 Glutamine synthetase, catalytic domain Clocl_3945 PF03951 Glutamine synthetase, beta-Grasp domain Clocl_3947 PF01555 DNA methylase Clocl_3947 PF18273 Type III R-M EcoP15I C-terminal domain Clocl_3949 PF02517 CPBP intramembrane metalloprotease Clocl_3951 PF00072 Response regulator receiver domain Clocl_3953 PF00942 Cellulose binding domain Clocl_3953 PF00404 Dockerin type I domain Clocl_3953 PF00963 Cohesin domain Clocl_3954 PF00942 Cellulose binding domain Clocl_3954 PF00963 Cohesin domain Clocl_3954 PF00404 Dockerin type I domain Clocl_3955 PF16363 GDP-mannose 4,6 dehydratase Clocl_3956 PF00483 Nucleotidyl transferase Clocl_3957 PF16363 GDP-mannose 4,6 dehydratase Clocl_3961 PF01370 NAD dependent epimerase/dehydratase family Clocl_3963 PF04055 Radical SAM superfamily Clocl_3963 PF06463 Molybdenum Cofactor Synthesis C Clocl_3968 PF02011 Glycosyl hydrolase family 48 Clocl_3968 PF00404 Dockerin type I domain Clocl_3969 PF13193 AMP-binding enzyme C-terminal domain Clocl_3969 PF00501 AMP-binding enzyme Clocl_3970 PF14492 Elongation Factor G, domain II Clocl_3970 PF03764 Elongation factor G, domain IV Clocl_3970 PF00009 Elongation factor Tu GTP binding domain Clocl_3970 PF00679 Elongation factor G C-terminus Clocl_3971 PF01661 Macro domain Clocl_3973 PF02661 Fic/DOC family Clocl_3973 PF17841 BID domain of Bartonella effector protein (Bep) Clocl_3977 PF04542 Sigma-70 region 2 Clocl_3977 PF08281 Sigma-70, region 4 Clocl_3978 PF08032 RNA 2'-O ribose methyltransferase substrate binding Clocl_3978 PF00588 SpoU rRNA Methylase family Clocl_3979 PF00636 Ribonuclease III domain Clocl_3980 PF09190 DALR domain Clocl_3980 PF01406 tRNA synthetases class I (C) catalytic domain Clocl_3981 PF00132 Bacterial transferase hexapeptide (six repeats) Clocl_3989 PF01546 Peptidase family M20/M25/M40 Clocl_3989 PF07687 Peptidase dimerisation domain Clocl_3990 PF04070 Domain of unknown function (DUF378) Clocl_3992 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clocl_3994 PF01709 Transcriptional regulator Clocl_3995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_3995 PF00512 His Kinase A (phospho-acceptor) domain Clocl_3995 PF08448 PAS fold Clocl_3995 PF13426 PAS domain Clocl_3995 PF00072 Response regulator receiver domain Clocl_3997 PF09186 Domain of unknown function (DUF1949) Clocl_3997 PF01205 Uncharacterized protein family UPF0029 Clocl_3998 PF10502 Signal peptidase, peptidase S26 Clocl_4000 PF13167 GTP-binding GTPase N-terminal Clocl_4000 PF16360 GTP-binding GTPase Middle Region Clocl_4000 PF01926 50S ribosome-binding GTPase Clocl_4002 PF00692 dUTPase Clocl_4003 PF12392 Collagenase Clocl_4003 PF01136 Peptidase family U32 Clocl_4004 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Clocl_4004 PF01676 Metalloenzyme superfamily Clocl_4007 PF02011 Glycosyl hydrolase family 48 Clocl_4007 PF00404 Dockerin type I domain Clocl_4008 PF00942 Cellulose binding domain Clocl_4008 PF12791 Anti-sigma factor N-terminus Clocl_4010 PF04024 PspC domain Clocl_4012 PF07745 Glycosyl hydrolase family 53 Clocl_4013 PF01027 Inhibitor of apoptosis-promoting Bax1 Clocl_4014 PF01814 Hemerythrin HHE cation binding domain Clocl_4016 PF00398 Ribosomal RNA adenine dimethylase Clocl_4017 PF07501 G5 domain Clocl_4017 PF03990 G5-linked-Ubiquitin-like domain Clocl_4017 PF06725 3D domain Clocl_4019 PF01026 TatD related DNase Clocl_4020 PF09334 tRNA synthetases class I (M) Clocl_4020 PF01588 Putative tRNA binding domain Clocl_4020 PF08264 Anticodon-binding domain of tRNA Clocl_4021 PF07670 Nucleoside recognition Clocl_4022 PF07670 Nucleoside recognition Clocl_4023 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Clocl_4023 PF18277 AbrB C-terminal domain Clocl_4024 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clocl_4025 PF05175 Methyltransferase small domain Clocl_4026 PF00037 4Fe-4S binding domain Clocl_4027 PF04468 PSP1 C-terminal conserved region Clocl_4029 PF03885 Protein of unknown function (DUF327) Clocl_4030 PF02223 Thymidylate kinase Clocl_4031 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Clocl_4031 PF01276 Orn/Lys/Arg decarboxylase, major domain Clocl_4033 PF08331 Domain of unknown function (DUF1730) Clocl_4034 PF02018 Carbohydrate binding domain Clocl_4034 PF00404 Dockerin type I domain Clocl_4034 PF00756 Putative esterase Clocl_4034 PF00331 Glycosyl hydrolase family 10 Clocl_4036 PF03309 Type III pantothenate kinase Clocl_4039 PF02237 Biotin protein ligase C terminal domain Clocl_4039 PF03099 Biotin/lipoate A/B protein ligase family Clocl_4039 PF08279 HTH domain Clocl_4041 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Clocl_4042 PF02152 Dihydroneopterin aldolase Clocl_4043 PF00809 Pterin binding enzyme Clocl_4047 PF00465 Iron-containing alcohol dehydrogenase Clocl_4048 PF03551 Transcriptional regulator PadR-like family Clocl_4050 PF02743 Cache domain Clocl_4050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clocl_4050 PF00672 HAMP domain Clocl_4051 PF00571 CBS domain Clocl_4051 PF01368 DHH family Clocl_4051 PF02833 DHHA2 domain Clocl_4051 PF07085 DRTGG domain Clocl_4052 PF01227 GTP cyclohydrolase I Clocl_4053 PF02653 Branched-chain amino acid transport system / permease component Clocl_4054 PF00005 ABC transporter Clocl_4055 PF13407 Periplasmic binding protein domain Clocl_4056 PF08443 RimK-like ATP-grasp domain Clocl_4056 PF02875 Mur ligase family, glutamate ligase domain Clocl_4056 PF08245 Mur ligase middle domain Clocl_4057 PF03575 Peptidase family S51 Clocl_4059 PF01979 Amidohydrolase family Clocl_4060 PF00717 Peptidase S24-like Clocl_4060 PF01726 LexA DNA binding domain Clocl_4061 PF00180 Isocitrate/isopropylmalate dehydrogenase Clocl_4062 PF12833 Helix-turn-helix domain Clocl_4066 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clocl_4066 PF00205 Thiamine pyrophosphate enzyme, central domain Clocl_4066 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Clocl_4068 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Clocl_4069 PF12146 Serine aminopeptidase, S33 Clocl_4074 PF02561 Flagellar protein FliS Clocl_4075 PF07196 Flagellin hook IN motif Clocl_4075 PF07195 Flagellar hook-associated protein 2 C-terminus Clocl_4075 PF02465 Flagellar hook-associated protein 2 N-terminus Clocl_4077 PF16363 GDP-mannose 4,6 dehydratase Clocl_4078 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clocl_4081 PF00551 Formyl transferase Clocl_4081 PF02911 Formyl transferase, C-terminal domain Clocl_4082 PF08666 SAF domain Clocl_4082 PF03102 NeuB family Clocl_4084 PF00550 Phosphopantetheine attachment site Clocl_4086 PF02348 Cytidylyltransferase Clocl_4087 PF13649 Methyltransferase domain Clocl_4088 PF02719 Polysaccharide biosynthesis protein Clocl_4088 PF08485 Polysaccharide biosynthesis protein C-terminal Clocl_4092 PF00669 Bacterial flagellin N-terminal helical region Clocl_4092 PF00700 Bacterial flagellin C-terminal helical region Clocl_4093 PF00700 Bacterial flagellin C-terminal helical region Clocl_4093 PF00669 Bacterial flagellin N-terminal helical region Clocl_4094 PF00700 Bacterial flagellin C-terminal helical region Clocl_4094 PF00669 Bacterial flagellin N-terminal helical region Clocl_4095 PF02599 Global regulator protein family Clocl_4096 PF02623 FliW protein Clocl_4098 PF00700 Bacterial flagellin C-terminal helical region Clocl_4098 PF00669 Bacterial flagellin N-terminal helical region Clocl_4099 PF00460 Flagella basal body rod protein Clocl_4099 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clocl_4100 PF00460 Flagella basal body rod protein Clocl_4100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clocl_4104 PF00156 Phosphoribosyl transferase domain Clocl_4105 PF05552 Conserved TM helix Clocl_4105 PF00924 Mechanosensitive ion channel Clocl_4108 PF07722 Peptidase C26 Clocl_4109 PF01740 STAS domain Clocl_4111 PF00301 Rubredoxin Clocl_4112 PF01797 Transposase IS200 like Clocl_4113 PF06866 Protein of unknown function (DUF1256) Clocl_4115 PF12671 Putative amidase domain Clocl_4116 PF01197 Ribosomal protein L31 Clocl_4117 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clocl_4117 PF07498 Rho termination factor, N-terminal domain Clocl_4117 PF07497 Rho termination factor, RNA-binding domain Clocl_4121 PF00005 ABC transporter Clocl_4122 PF01032 FecCD transport family Clocl_4123 PF01497 Periplasmic binding protein Clocl_4126 PF01171 PP-loop family Clocl_4130 PF00483 Nucleotidyl transferase Clocl_4131 PF03631 Virulence factor BrkB Clocl_4132 PF01084 Ribosomal protein S18 Clocl_4133 PF00436 Single-strand binding protein family Clocl_4134 PF01250 Ribosomal protein S6 Clocl_4135 PF00990 Diguanylate cyclase, GGDEF domain Clocl_4135 PF17158 Membrane-associated sensor, integral membrane domain Clocl_4136 PF12791 Anti-sigma factor N-terminus Clocl_4137 PF04542 Sigma-70 region 2 Clocl_4140 PF08502 LeuA allosteric (dimerisation) domain Clocl_4140 PF00682 HMGL-like Clocl_4141 PF00682 HMGL-like Clocl_4141 PF08502 LeuA allosteric (dimerisation) domain Clocl_4142 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Clocl_4142 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Clocl_4143 PF10369 Small subunit of acetolactate synthase Clocl_4144 PF00205 Thiamine pyrophosphate enzyme, central domain Clocl_4144 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clocl_4144 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Clocl_4147 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clocl_4148 PF13180 PDZ domain Clocl_4150 PF01476 LysM domain Clocl_4150 PF00246 Zinc carboxypeptidase Clocl_4153 PF01751 Toprim domain Clocl_4153 PF01131 DNA topoisomerase Clocl_4154 PF05582 YabG peptidase U57 Clocl_4155 PF01841 Transglutaminase-like superfamily Clocl_4155 PF13559 Domain of unknown function (DUF4129) Clocl_4155 PF11992 Domain of unknown function (DUF3488) Clocl_4157 PF17863 AAA lid domain Clocl_4157 PF07726 ATPase family associated with various cellular activities (AAA) Clocl_4158 PF00553 Cellulose binding domain Clocl_4158 PF00150 Cellulase (glycosyl hydrolase family 5) Clocl_4159 PF01522 Polysaccharide deacetylase Clocl_4159 PF00457 Glycosyl hydrolases family 11 Clocl_4159 PF03422 Carbohydrate binding module (family 6) Clocl_4161 PF18370 Rhamnogalacturonan I lyases beta-sheet domain Clocl_4167 PF00356 Bacterial regulatory proteins, lacI family Clocl_4168 PF02590 Predicted SPOUT methyltransferase Clocl_4169 PF00753 Metallo-beta-lactamase superfamily Clocl_4170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clocl_4174 PF13426 PAS domain Clocl_4174 PF00512 His Kinase A (phospho-acceptor) domain Clocl_4174 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clocl_4174 PF00672 HAMP domain Clocl_4175 PF00072 Response regulator receiver domain Clocl_4175 PF00486 Transcriptional regulatory protein, C terminal Clocl_4179 PF02350 UDP-N-acetylglucosamine 2-epimerase Clocl_4180 PF03102 NeuB family Clocl_4180 PF08666 SAF domain Clocl_4182 PF00483 Nucleotidyl transferase Clocl_4183 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clocl_4184 PF16363 GDP-mannose 4,6 dehydratase Clocl_4185 PF02719 Polysaccharide biosynthesis protein Clocl_4191 PF16363 GDP-mannose 4,6 dehydratase Clocl_4192 PF00535 Glycosyl transferase family 2 Clocl_4194 PF00535 Glycosyl transferase family 2 Clocl_4196 PF01370 NAD dependent epimerase/dehydratase family Clocl_4198 PF02397 Bacterial sugar transferase Clocl_4201 PF02706 Chain length determinant protein Clocl_4204 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clocl_4205 PF07486 Cell Wall Hydrolase Clocl_4207 PF00571 CBS domain Clocl_4210 PF01348 Type II intron maturase Clocl_4210 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Clocl_4211 PF00963 Cohesin domain Clocl_4211 PF03442 Carbohydrate binding domain X2 Clocl_4211 PF00942 Cellulose binding domain Clocl_4212 PF03442 Carbohydrate binding domain X2 Clocl_4212 PF00942 Cellulose binding domain Clocl_4212 PF00963 Cohesin domain Clocl_4213 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Clocl_4213 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Clocl_4214 PF00890 FAD binding domain Clocl_4214 PF02910 Fumarate reductase flavoprotein C-term Clocl_4215 PF02445 Quinolinate synthetase A protein Clocl_4221 PF03989 DNA gyrase C-terminal domain, beta-propeller Clocl_4221 PF00521 DNA gyrase/topoisomerase IV, subunit A Clocl_4222 PF02195 ParB-like nuclease domain Clocl_4222 PF17762 HTH domain found in ParB protein Clocl_4223 PF02527 rRNA small subunit methyltransferase G Clocl_4224 PF01134 Glucose inhibited division protein A Clocl_4224 PF13932 GidA associated domain Clocl_4225 PF01926 50S ribosome-binding GTPase Clocl_4225 PF12631 MnmE helical domain Clocl_4225 PF10396 GTP-binding protein TrmE N-terminus Clocl_4226 PF14804 Jag N-terminus Clocl_4226 PF01424 R3H domain Clocl_4227 PF02096 60Kd inner membrane protein Clocl_4228 PF01809 Putative membrane protein insertion efficiency factor Clocl_4229 PF00825 Ribonuclease P Clocl_4230 PF00468 Ribosomal protein L34