locus-tag class description AD2_00001 PF00308 Bacterial dnaA protein AD2_00001 PF08299 Bacterial dnaA protein helix-turn-helix AD2_00001 PF11638 DnaA N-terminal domain AD2_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain AD2_00002 PF02767 DNA polymerase III beta subunit, central domain AD2_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain AD2_00004 PF02463 RecF/RecN/SMC N terminal domain AD2_00006 PF01751 Toprim domain AD2_00006 PF00986 DNA gyrase B subunit, carboxyl terminus AD2_00006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00006 PF00204 DNA gyrase B AD2_00007 PF13614 AAA domain AD2_00008 PF17762 HTH domain found in ParB protein AD2_00008 PF02195 ParB-like nuclease domain AD2_00011 PF02403 Seryl-tRNA synthetase N-terminal domain AD2_00011 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AD2_00012 PF07690 Major Facilitator Superfamily AD2_00014 PF00395 S-layer homology domain AD2_00016 PF04294 VanW like protein AD2_00017 PF00246 Zinc carboxypeptidase AD2_00017 PF01476 LysM domain AD2_00020 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AD2_00021 PF00037 4Fe-4S binding domain AD2_00022 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AD2_00022 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AD2_00023 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AD2_00030 PF01268 Formate--tetrahydrofolate ligase AD2_00031 PF05582 YabG peptidase U57 AD2_00034 PF00288 GHMP kinases N terminal domain AD2_00034 PF08544 GHMP kinases C terminal AD2_00035 PF00392 Bacterial regulatory proteins, gntR family AD2_00035 PF07729 FCD domain AD2_00036 PF00403 Heavy-metal-associated domain AD2_00038 PF00004 ATPase family associated with various cellular activities (AAA) AD2_00038 PF01434 Peptidase family M41 AD2_00038 PF17862 AAA+ lid domain AD2_00043 PF13514 AAA domain AD2_00044 PF00877 NlpC/P60 family AD2_00045 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AD2_00045 PF04101 Glycosyltransferase family 28 C-terminal domain AD2_00047 PF01471 Putative peptidoglycan binding domain AD2_00047 PF07486 Cell Wall Hydrolase AD2_00048 PF14620 YpeB sporulation AD2_00050 PF00308 Bacterial dnaA protein AD2_00050 PF11638 DnaA N-terminal domain AD2_00050 PF08299 Bacterial dnaA protein helix-turn-helix AD2_00052 PF01966 HD domain AD2_00055 PF00963 Cohesin domain AD2_00055 PF03442 Carbohydrate binding domain X2 AD2_00055 PF00942 Cellulose binding domain AD2_00057 PF01618 MotA/TolQ/ExbB proton channel family AD2_00058 PF13677 Membrane MotB of proton-channel complex MotA/MotB AD2_00058 PF00691 OmpA family AD2_00059 PF07136 Protein of unknown function (DUF1385) AD2_00060 PF05175 Methyltransferase small domain AD2_00060 PF17827 PrmC N-terminal domain AD2_00062 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AD2_00062 PF13237 4Fe-4S dicluster domain AD2_00062 PF13375 RnfC Barrel sandwich hybrid domain AD2_00062 PF10531 SLBB domain AD2_00063 PF03116 NQR2, RnfD, RnfE family AD2_00064 PF04205 FMN-binding domain AD2_00065 PF02508 Rnf-Nqr subunit, membrane protein AD2_00066 PF02508 Rnf-Nqr subunit, membrane protein AD2_00067 PF04060 Putative Fe-S cluster AD2_00069 PF01202 Shikimate kinase AD2_00073 PF08220 DeoR-like helix-turn-helix domain AD2_00073 PF00455 DeoR C terminal sensor domain AD2_00074 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AD2_00074 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AD2_00075 PF00456 Transketolase, thiamine diphosphate binding domain AD2_00076 PF02780 Transketolase, C-terminal domain AD2_00076 PF02779 Transketolase, pyrimidine binding domain AD2_00077 PF08240 Alcohol dehydrogenase GroES-like domain AD2_00077 PF00107 Zinc-binding dehydrogenase AD2_00078 PF13407 Periplasmic binding protein domain AD2_00079 PF00005 ABC transporter AD2_00080 PF02653 Branched-chain amino acid transport system / permease component AD2_00081 PF00300 Histidine phosphatase superfamily (branch 1) AD2_00082 PF00271 Helicase conserved C-terminal domain AD2_00082 PF00176 SNF2 family N-terminal domain AD2_00082 PF04434 SWIM zinc finger AD2_00083 PF08439 Oligopeptidase F AD2_00083 PF01432 Peptidase family M3 AD2_00085 PF06452 Carbohydrate family 9 binding domain-like AD2_00085 PF02018 Carbohydrate binding domain AD2_00085 PF00331 Glycosyl hydrolase family 10 AD2_00085 PF00395 S-layer homology domain AD2_00086 PF14437 MafB19-like deaminase AD2_00088 PF07883 Cupin domain AD2_00089 PF06725 3D domain AD2_00090 PF00356 Bacterial regulatory proteins, lacI family AD2_00091 PF00395 S-layer homology domain AD2_00091 PF03424 Carbohydrate binding domain (family 17/28) AD2_00091 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_00092 PF05582 YabG peptidase U57 AD2_00093 PF01131 DNA topoisomerase AD2_00093 PF01751 Toprim domain AD2_00095 PF00924 Mechanosensitive ion channel AD2_00097 PF13180 PDZ domain AD2_00099 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AD2_00100 PF00205 Thiamine pyrophosphate enzyme, central domain AD2_00100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AD2_00100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AD2_00101 PF10369 Small subunit of acetolactate synthase AD2_00102 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AD2_00102 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AD2_00103 PF00682 HMGL-like AD2_00103 PF08502 LeuA allosteric (dimerisation) domain AD2_00105 PF04542 Sigma-70 region 2 AD2_00106 PF12791 Anti-sigma factor N-terminus AD2_00108 PF02082 Transcriptional regulator AD2_00109 PF01488 Shikimate / quinate 5-dehydrogenase AD2_00109 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AD2_00110 PF01488 Shikimate / quinate 5-dehydrogenase AD2_00110 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AD2_00111 PF03900 Porphobilinogen deaminase, C-terminal domain AD2_00111 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AD2_00112 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AD2_00112 PF02602 Uroporphyrinogen-III synthase HemD AD2_00113 PF00490 Delta-aminolevulinic acid dehydratase AD2_00114 PF00202 Aminotransferase class-III AD2_00116 PF00528 Binding-protein-dependent transport system inner membrane component AD2_00117 PF00528 Binding-protein-dependent transport system inner membrane component AD2_00118 PF12857 TOBE-like domain AD2_00118 PF17850 CysA C-terminal regulatory domain AD2_00118 PF00005 ABC transporter AD2_00119 PF01507 Phosphoadenosine phosphosulfate reductase family AD2_00120 PF01507 Phosphoadenosine phosphosulfate reductase family AD2_00121 PF00009 Elongation factor Tu GTP binding domain AD2_00123 PF00899 ThiF family AD2_00125 PF13187 4Fe-4S dicluster domain AD2_00125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AD2_00125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AD2_00128 PF04542 Sigma-70 region 2 AD2_00128 PF08281 Sigma-70, region 4 AD2_00135 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AD2_00137 PF02011 Glycosyl hydrolase family 48 AD2_00137 PF00404 Dockerin type I domain AD2_00139 PF04055 Radical SAM superfamily AD2_00139 PF06463 Molybdenum Cofactor Synthesis C AD2_00140 PF04055 Radical SAM superfamily AD2_00140 PF06463 Molybdenum Cofactor Synthesis C AD2_00141 PF04055 Radical SAM superfamily AD2_00141 PF06463 Molybdenum Cofactor Synthesis C AD2_00144 PF04055 Radical SAM superfamily AD2_00144 PF06463 Molybdenum Cofactor Synthesis C AD2_00145 PF00535 Glycosyl transferase family 2 AD2_00146 PF16363 GDP-mannose 4,6 dehydratase AD2_00147 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AD2_00148 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AD2_00149 PF16363 GDP-mannose 4,6 dehydratase AD2_00150 PF00483 Nucleotidyl transferase AD2_00152 PF00872 Transposase, Mutator family AD2_00154 PF04055 Radical SAM superfamily AD2_00154 PF02310 B12 binding domain AD2_00162 PF00005 ABC transporter AD2_00163 PF00528 Binding-protein-dependent transport system inner membrane component AD2_00166 PF01928 CYTH domain AD2_00167 PF02541 Ppx/GppA phosphatase family AD2_00168 PF00465 Iron-containing alcohol dehydrogenase AD2_00170 PF00809 Pterin binding enzyme AD2_00171 PF02152 Dihydroneopterin aldolase AD2_00172 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AD2_00174 PF02237 Biotin protein ligase C terminal domain AD2_00174 PF08279 HTH domain AD2_00174 PF03099 Biotin/lipoate A/B protein ligase family AD2_00177 PF03309 Type III pantothenate kinase AD2_00179 PF00331 Glycosyl hydrolase family 10 AD2_00179 PF12791 Anti-sigma factor N-terminus AD2_00182 PF00472 RF-1 domain AD2_00182 PF03462 PCRF domain AD2_00183 PF02535 ZIP Zinc transporter AD2_00184 PF01300 Telomere recombination AD2_00184 PF03481 Putative GTP-binding controlling metal-binding AD2_00185 PF01451 Low molecular weight phosphotyrosine protein phosphatase AD2_00186 PF02502 Ribose/Galactose Isomerase AD2_00188 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AD2_00189 PF00953 Glycosyl transferase family 4 AD2_00190 PF02350 UDP-N-acetylglucosamine 2-epimerase AD2_00191 PF00119 ATP synthase A chain AD2_00192 PF00137 ATP synthase subunit C AD2_00193 PF00430 ATP synthase B/B' CF(0) AD2_00194 PF00213 ATP synthase delta (OSCP) subunit AD2_00195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AD2_00195 PF00306 ATP synthase alpha/beta chain, C terminal domain AD2_00195 PF02874 ATP synthase alpha/beta family, beta-barrel domain AD2_00196 PF00231 ATP synthase AD2_00197 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AD2_00197 PF02874 ATP synthase alpha/beta family, beta-barrel domain AD2_00198 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AD2_00198 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AD2_00202 PF00963 Cohesin domain AD2_00202 PF00395 S-layer homology domain AD2_00204 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AD2_00205 PF08486 Stage II sporulation protein AD2_00207 PF12116 Stage III sporulation protein D AD2_00209 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AD2_00209 PF00460 Flagella basal body rod protein AD2_00210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AD2_00210 PF00460 Flagella basal body rod protein AD2_00213 PF00005 ABC transporter AD2_00213 PF12704 MacB-like periplasmic core domain AD2_00213 PF02687 FtsX-like permease family AD2_00214 PF07977 FabA-like domain AD2_00215 PF01225 Mur ligase family, catalytic domain AD2_00215 PF08245 Mur ligase middle domain AD2_00215 PF02875 Mur ligase family, glutamate ligase domain AD2_00216 PF09182 Bacterial purine repressor, N-terminal AD2_00216 PF00156 Phosphoribosyl transferase domain AD2_00217 PF04026 SpoVG AD2_00218 PF00132 Bacterial transferase hexapeptide (six repeats) AD2_00218 PF14602 Hexapeptide repeat of succinyl-transferase AD2_00218 PF00483 Nucleotidyl transferase AD2_00219 PF14572 Phosphoribosyl synthetase-associated domain AD2_00219 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AD2_00220 PF01195 Peptidyl-tRNA hydrolase AD2_00221 PF17757 UvrB interaction domain AD2_00221 PF00271 Helicase conserved C-terminal domain AD2_00221 PF03461 TRCF domain AD2_00221 PF00270 DEAD/DEAH box helicase AD2_00221 PF02559 CarD-like/TRCF domain AD2_00224 PF02311 AraC-like ligand binding domain AD2_00224 PF12833 Helix-turn-helix domain AD2_00225 PF01243 Pyridoxamine 5'-phosphate oxidase AD2_00225 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AD2_00226 PF03023 Lipid II flippase MurJ AD2_00227 PF13477 Glycosyl transferase 4-like AD2_00227 PF00534 Glycosyl transferases group 1 AD2_00229 PF02348 Cytidylyltransferase AD2_00229 PF13472 GDSL-like Lipase/Acylhydrolase family AD2_00230 PF02350 UDP-N-acetylglucosamine 2-epimerase AD2_00231 PF03102 NeuB family AD2_00231 PF08666 SAF domain AD2_00233 PF00483 Nucleotidyl transferase AD2_00234 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AD2_00235 PF01370 NAD dependent epimerase/dehydratase family AD2_00237 PF07478 D-ala D-ala ligase C-terminus AD2_00237 PF01820 D-ala D-ala ligase N-terminus AD2_00238 PF02397 Bacterial sugar transferase AD2_00240 PF02719 Polysaccharide biosynthesis protein AD2_00243 PF13614 AAA domain AD2_00245 PF15714 Stage V sporulation protein T C-terminal, transcription factor AD2_00245 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AD2_00246 PF03819 MazG nucleotide pyrophosphohydrolase domain AD2_00247 PF00216 Bacterial DNA-binding protein AD2_00248 PF01479 S4 domain AD2_00252 PF00575 S1 RNA binding domain AD2_00253 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_00253 PF00672 HAMP domain AD2_00254 PF03109 ABC1 family AD2_00256 PF00689 Cation transporting ATPase, C-terminus AD2_00256 PF00690 Cation transporter/ATPase, N-terminus AD2_00271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00271 PF00512 His Kinase A (phospho-acceptor) domain AD2_00271 PF00989 PAS fold AD2_00274 PF03572 Peptidase family S41 AD2_00274 PF00595 PDZ domain AD2_00275 PF07228 Stage II sporulation protein E (SpoIIE) AD2_00280 PF01207 Dihydrouridine synthase (Dus) AD2_00281 PF02491 SHS2 domain inserted in FTSA AD2_00282 PF03061 Thioesterase superfamily AD2_00283 PF01943 Polysaccharide biosynthesis protein AD2_00283 PF14667 Polysaccharide biosynthesis C-terminal domain AD2_00285 PF00155 Aminotransferase class I and II AD2_00285 PF00392 Bacterial regulatory proteins, gntR family AD2_00287 PF00132 Bacterial transferase hexapeptide (six repeats) AD2_00292 PF01256 Carbohydrate kinase AD2_00292 PF03853 YjeF-related protein N-terminus AD2_00293 PF01168 Alanine racemase, N-terminal domain AD2_00293 PF00842 Alanine racemase, C-terminal domain AD2_00294 PF01402 Ribbon-helix-helix protein, copG family AD2_00295 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AD2_00297 PF03808 Glycosyl transferase WecB/TagA/CpsF family AD2_00298 PF13579 Glycosyl transferase 4-like domain AD2_00298 PF00534 Glycosyl transferases group 1 AD2_00299 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AD2_00299 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AD2_00300 PF00456 Transketolase, thiamine diphosphate binding domain AD2_00301 PF02779 Transketolase, pyrimidine binding domain AD2_00301 PF02780 Transketolase, C-terminal domain AD2_00302 PF00005 ABC transporter AD2_00309 PF00920 Dehydratase family AD2_00310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AD2_00310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AD2_00310 PF00205 Thiamine pyrophosphate enzyme, central domain AD2_00311 PF00471 Ribosomal protein L33 AD2_00312 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AD2_00313 PF00467 KOW motif AD2_00313 PF02357 Transcription termination factor nusG AD2_00314 PF00298 Ribosomal protein L11, RNA binding domain AD2_00314 PF03946 Ribosomal protein L11, N-terminal domain AD2_00315 PF00687 Ribosomal protein L1p/L10e family AD2_00316 PF00466 Ribosomal protein L10 AD2_00317 PF00542 Ribosomal protein L7/L12 C-terminal domain AD2_00317 PF16320 Ribosomal protein L7/L12 dimerisation domain AD2_00318 PF04561 RNA polymerase Rpb2, domain 2 AD2_00318 PF04560 RNA polymerase Rpb2, domain 7 AD2_00318 PF00562 RNA polymerase Rpb2, domain 6 AD2_00318 PF04565 RNA polymerase Rpb2, domain 3 AD2_00318 PF04563 RNA polymerase beta subunit AD2_00318 PF10385 RNA polymerase beta subunit external 1 domain AD2_00319 PF04997 RNA polymerase Rpb1, domain 1 AD2_00319 PF00623 RNA polymerase Rpb1, domain 2 AD2_00319 PF04983 RNA polymerase Rpb1, domain 3 AD2_00319 PF05000 RNA polymerase Rpb1, domain 4 AD2_00319 PF04998 RNA polymerase Rpb1, domain 5 AD2_00320 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AD2_00321 PF00164 Ribosomal protein S12/S23 AD2_00322 PF00177 Ribosomal protein S7p/S5e AD2_00323 PF00679 Elongation factor G C-terminus AD2_00323 PF14492 Elongation Factor G, domain II AD2_00323 PF03764 Elongation factor G, domain IV AD2_00323 PF00009 Elongation factor Tu GTP binding domain AD2_00323 PF03144 Elongation factor Tu domain 2 AD2_00324 PF03143 Elongation factor Tu C-terminal domain AD2_00324 PF00009 Elongation factor Tu GTP binding domain AD2_00324 PF03144 Elongation factor Tu domain 2 AD2_00325 PF04542 Sigma-70 region 2 AD2_00325 PF08281 Sigma-70, region 4 AD2_00328 PF04294 VanW like protein AD2_00329 PF00381 PTS HPr component phosphorylation site AD2_00330 PF05524 PEP-utilising enzyme, N-terminal AD2_00330 PF00391 PEP-utilising enzyme, mobile domain AD2_00330 PF02896 PEP-utilising enzyme, TIM barrel domain AD2_00331 PF01541 GIY-YIG catalytic domain AD2_00331 PF02151 UvrB/uvrC motif AD2_00331 PF08459 UvrC Helix-hairpin-helix N-terminal AD2_00333 PF05697 Bacterial trigger factor protein (TF) AD2_00333 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AD2_00333 PF05698 Bacterial trigger factor protein (TF) C-terminus AD2_00334 PF00574 Clp protease AD2_00335 PF06689 ClpX C4-type zinc finger AD2_00335 PF07724 AAA domain (Cdc48 subfamily) AD2_00335 PF10431 C-terminal, D2-small domain, of ClpB protein AD2_00336 PF00004 ATPase family associated with various cellular activities (AAA) AD2_00336 PF05362 Lon protease (S16) C-terminal proteolytic domain AD2_00337 PF00814 Glycoprotease family AD2_00338 PF01464 Transglycosylase SLT domain AD2_00341 PF02811 PHP domain AD2_00342 PF01668 SmpB protein AD2_00350 PF03471 Transporter associated domain AD2_00350 PF00999 Sodium/hydrogen exchanger family AD2_00350 PF02080 TrkA-C domain AD2_00352 PF06445 GyrI-like small molecule binding domain AD2_00352 PF12833 Helix-turn-helix domain AD2_00353 PF00942 Cellulose binding domain AD2_00353 PF00759 Glycosyl hydrolase family 9 AD2_00354 PF00942 Cellulose binding domain AD2_00354 PF00759 Glycosyl hydrolase family 9 AD2_00354 PF00404 Dockerin type I domain AD2_00361 PF00149 Calcineurin-like phosphoesterase AD2_00362 PF01814 Hemerythrin HHE cation binding domain AD2_00362 PF04405 Domain of Unknown function (DUF542) AD2_00363 PF00301 Rubredoxin AD2_00363 PF00753 Metallo-beta-lactamase superfamily AD2_00363 PF00258 Flavodoxin AD2_00364 PF13545 Crp-like helix-turn-helix domain AD2_00364 PF00027 Cyclic nucleotide-binding domain AD2_00368 PF04973 Nicotinamide mononucleotide transporter AD2_00369 PF13521 AAA domain AD2_00369 PF01381 Helix-turn-helix AD2_00374 PF00395 S-layer homology domain AD2_00374 PF00963 Cohesin domain AD2_00376 PF02607 B12 binding domain AD2_00376 PF02310 B12 binding domain AD2_00377 PF01208 Uroporphyrinogen decarboxylase (URO-D) AD2_00378 PF01208 Uroporphyrinogen decarboxylase (URO-D) AD2_00379 PF00970 Oxidoreductase FAD-binding domain AD2_00379 PF00175 Oxidoreductase NAD-binding domain AD2_00379 PF00111 2Fe-2S iron-sulfur cluster binding domain AD2_00381 PF09084 NMT1/THI5 like AD2_00382 PF00005 ABC transporter AD2_00383 PF00528 Binding-protein-dependent transport system inner membrane component AD2_00384 PF14535 AMP-binding enzyme C-terminal domain AD2_00384 PF00501 AMP-binding enzyme AD2_00385 PF00155 Aminotransferase class I and II AD2_00386 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AD2_00388 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AD2_00388 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AD2_00389 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AD2_00391 PF01042 Endoribonuclease L-PSP AD2_00392 PF01053 Cys/Met metabolism PLP-dependent enzyme AD2_00393 PF00155 Aminotransferase class I and II AD2_00394 PF03063 Prismane/CO dehydrogenase family AD2_00396 PF00528 Binding-protein-dependent transport system inner membrane component AD2_00397 PF00005 ABC transporter AD2_00399 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_00400 PF00356 Bacterial regulatory proteins, lacI family AD2_00401 PF00722 Glycosyl hydrolases family 16 AD2_00402 PF02690 Na+/Pi-cotransporter AD2_00403 PF02156 Glycosyl hydrolase family 26 AD2_00404 PF00759 Glycosyl hydrolase family 9 AD2_00404 PF00942 Cellulose binding domain AD2_00405 PF00486 Transcriptional regulatory protein, C terminal AD2_00405 PF00072 Response regulator receiver domain AD2_00406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00406 PF00512 His Kinase A (phospho-acceptor) domain AD2_00407 PF01921 tRNA synthetases class I (K) AD2_00408 PF01584 CheW-like domain AD2_00409 PF01627 Hpt domain AD2_00409 PF01584 CheW-like domain AD2_00409 PF02895 Signal transducing histidine kinase, homodimeric domain AD2_00409 PF00072 Response regulator receiver domain AD2_00409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_00411 PF01739 CheR methyltransferase, SAM binding domain AD2_00411 PF03705 CheR methyltransferase, all-alpha domain AD2_00412 PF00072 Response regulator receiver domain AD2_00412 PF01339 CheB methylesterase AD2_00413 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AD2_00413 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AD2_00414 PF03471 Transporter associated domain AD2_00414 PF01595 Cyclin M transmembrane N-terminal domain AD2_00414 PF00571 CBS domain AD2_00416 PF00404 Dockerin type I domain AD2_00416 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_00418 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AD2_00418 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AD2_00419 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AD2_00419 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AD2_00420 PF00580 UvrD/REP helicase N-terminal domain AD2_00420 PF13361 UvrD-like helicase C-terminal domain AD2_00423 PF00331 Glycosyl hydrolase family 10 AD2_00423 PF00756 Putative esterase AD2_00423 PF00404 Dockerin type I domain AD2_00423 PF02018 Carbohydrate binding domain AD2_00424 PF13393 Histidyl-tRNA synthetase AD2_00425 PF01634 ATP phosphoribosyltransferase AD2_00426 PF00815 Histidinol dehydrogenase AD2_00427 PF00155 Aminotransferase class I and II AD2_00428 PF00475 Imidazoleglycerol-phosphate dehydratase AD2_00429 PF01259 SAICAR synthetase AD2_00430 PF00117 Glutamine amidotransferase class-I AD2_00431 PF00977 Histidine biosynthesis protein AD2_00432 PF00977 Histidine biosynthesis protein AD2_00433 PF01502 Phosphoribosyl-AMP cyclohydrolase AD2_00433 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AD2_00435 PF00166 Chaperonin 10 Kd subunit AD2_00436 PF00118 TCP-1/cpn60 chaperonin family AD2_00439 PF00704 Glycosyl hydrolases family 18 AD2_00441 PF01272 Transcription elongation factor, GreA/GreB, C-term AD2_00441 PF03449 Transcription elongation factor, N-terminal AD2_00442 PF01740 STAS domain AD2_00444 PF04542 Sigma-70 region 2 AD2_00444 PF04539 Sigma-70 region 3 AD2_00444 PF04545 Sigma-70, region 4 AD2_00449 PF00338 Ribosomal protein S10p/S20e AD2_00450 PF00297 Ribosomal protein L3 AD2_00451 PF00573 Ribosomal protein L4/L1 family AD2_00452 PF00276 Ribosomal protein L23 AD2_00453 PF00181 Ribosomal Proteins L2, RNA binding domain AD2_00453 PF03947 Ribosomal Proteins L2, C-terminal domain AD2_00454 PF00203 Ribosomal protein S19 AD2_00455 PF00237 Ribosomal protein L22p/L17e AD2_00456 PF07650 KH domain AD2_00456 PF00189 Ribosomal protein S3, C-terminal domain AD2_00457 PF00252 Ribosomal protein L16p/L10e AD2_00458 PF00831 Ribosomal L29 protein AD2_00459 PF00366 Ribosomal protein S17 AD2_00460 PF00238 Ribosomal protein L14p/L23e AD2_00461 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AD2_00462 PF00673 ribosomal L5P family C-terminus AD2_00462 PF00281 Ribosomal protein L5 AD2_00463 PF00410 Ribosomal protein S8 AD2_00464 PF00347 Ribosomal protein L6 AD2_00465 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AD2_00466 PF00333 Ribosomal protein S5, N-terminal domain AD2_00466 PF03719 Ribosomal protein S5, C-terminal domain AD2_00467 PF00327 Ribosomal protein L30p/L7e AD2_00468 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AD2_00469 PF00344 SecY translocase AD2_00470 PF05191 Adenylate kinase, active site lid AD2_00471 PF00557 Metallopeptidase family M24 AD2_00473 PF01176 Translation initiation factor 1A / IF-1 AD2_00474 PF00444 Ribosomal protein L36 AD2_00475 PF00416 Ribosomal protein S13/S18 AD2_00476 PF00411 Ribosomal protein S11 AD2_00477 PF00163 Ribosomal protein S4/S9 N-terminal domain AD2_00477 PF01479 S4 domain AD2_00478 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AD2_00478 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AD2_00478 PF01000 RNA polymerase Rpb3/RpoA insert domain AD2_00479 PF01196 Ribosomal protein L17 AD2_00480 PF00005 ABC transporter AD2_00481 PF05175 Methyltransferase small domain AD2_00484 PF01555 DNA methylase AD2_00490 PF07508 Recombinase AD2_00490 PF00239 Resolvase, N terminal domain AD2_00490 PF13408 Recombinase zinc beta ribbon domain AD2_00491 PF00005 ABC transporter AD2_00492 PF02361 Cobalt transport protein AD2_00493 PF00480 ROK family AD2_00494 PF01416 tRNA pseudouridine synthase AD2_00495 PF02559 CarD-like/TRCF domain AD2_00496 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AD2_00497 PF00005 ABC transporter AD2_00498 PF12679 ABC-2 family transporter protein AD2_00499 PF00512 His Kinase A (phospho-acceptor) domain AD2_00499 PF00497 Bacterial extracellular solute-binding proteins, family 3 AD2_00499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00500 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AD2_00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00500 PF17203 Single cache domain 3 AD2_00500 PF00989 PAS fold AD2_00501 PF02542 YgbB family AD2_00502 PF03129 Anticodon binding domain AD2_00502 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AD2_00502 PF04073 Aminoacyl-tRNA editing domain AD2_00503 PF00188 Cysteine-rich secretory protein family AD2_00504 PF00404 Dockerin type I domain AD2_00504 PF00722 Glycosyl hydrolases family 16 AD2_00505 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AD2_00505 PF00703 Glycosyl hydrolases family 2 AD2_00505 PF16990 Carbohydrate binding module (family 35) AD2_00505 PF02837 Glycosyl hydrolases family 2, sugar binding domain AD2_00506 PF00942 Cellulose binding domain AD2_00506 PF00404 Dockerin type I domain AD2_00506 PF00963 Cohesin domain AD2_00517 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AD2_00518 PF00005 ABC transporter AD2_00518 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AD2_00519 PF00005 ABC transporter AD2_00519 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AD2_00520 PF00528 Binding-protein-dependent transport system inner membrane component AD2_00520 PF12911 N-terminal TM domain of oligopeptide transport permease C AD2_00521 PF00528 Binding-protein-dependent transport system inner membrane component AD2_00526 PF00392 Bacterial regulatory proteins, gntR family AD2_00527 PF00005 ABC transporter AD2_00529 PF00457 Glycosyl hydrolases family 11 AD2_00529 PF03422 Carbohydrate binding module (family 6) AD2_00530 PF03422 Carbohydrate binding module (family 6) AD2_00530 PF00457 Glycosyl hydrolases family 11 AD2_00531 PF17746 SfsA N-terminal OB domain AD2_00531 PF03749 Sugar fermentation stimulation protein RE domain AD2_00532 PF12791 Anti-sigma factor N-terminus AD2_00533 PF04542 Sigma-70 region 2 AD2_00540 PF02743 Cache domain AD2_00540 PF00672 HAMP domain AD2_00540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_00541 PF00005 ABC transporter AD2_00549 PF01625 Peptide methionine sulfoxide reductase AD2_00550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AD2_00550 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_00555 PF01965 DJ-1/PfpI family AD2_00557 PF00005 ABC transporter AD2_00557 PF00664 ABC transporter transmembrane region AD2_00559 PF01384 Phosphate transporter family AD2_00562 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AD2_00562 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AD2_00562 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_00563 PF01476 LysM domain AD2_00564 PF01476 LysM domain AD2_00564 PF03734 L,D-transpeptidase catalytic domain AD2_00566 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AD2_00566 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AD2_00570 PF17189 Glycosyl hydrolase family 30 beta sandwich domain AD2_00571 PF02769 AIR synthase related protein, C-terminal domain AD2_00571 PF00586 AIR synthase related protein, N-terminal domain AD2_00572 PF01924 Hydrogenase formation hypA family AD2_00573 PF01455 HupF/HypC family AD2_00574 PF07503 HypF finger AD2_00574 PF01300 Telomere recombination AD2_00574 PF17788 HypF Kae1-like domain AD2_00574 PF00708 Acylphosphatase AD2_00575 PF02492 CobW/HypB/UreG, nucleotide-binding domain AD2_00578 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AD2_00578 PF00374 Nickel-dependent hydrogenase AD2_00578 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AD2_00580 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AD2_00582 PF00361 Proton-conducting membrane transporter AD2_00582 PF13244 Domain of unknown function (DUF4040) AD2_00582 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AD2_00584 PF03449 Transcription elongation factor, N-terminal AD2_00584 PF01272 Transcription elongation factor, GreA/GreB, C-term AD2_00585 PF00285 Citrate synthase, C-terminal domain AD2_00586 PF00282 Pyridoxal-dependent decarboxylase conserved domain AD2_00587 PF01584 CheW-like domain AD2_00588 PF00672 HAMP domain AD2_00588 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_00588 PF02203 Tar ligand binding domain homologue AD2_00593 PF01842 ACT domain AD2_00593 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AD2_00593 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AD2_00594 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_00594 PF00672 HAMP domain AD2_00594 PF02743 Cache domain AD2_00597 PF01580 FtsK/SpoIIIE family AD2_00597 PF17854 FtsK alpha domain AD2_00597 PF09397 Ftsk gamma domain AD2_00601 PF00689 Cation transporting ATPase, C-terminus AD2_00601 PF00690 Cation transporter/ATPase, N-terminus AD2_00604 PF01098 Cell cycle protein AD2_00605 PF00905 Penicillin binding protein transpeptidase domain AD2_00606 PF04002 RadC-like JAB domain AD2_00608 PF00041 Fibronectin type III domain AD2_00608 PF00704 Glycosyl hydrolases family 18 AD2_00609 PF00872 Transposase, Mutator family AD2_00610 PF05593 RHS Repeat AD2_00618 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AD2_00621 PF05448 Acetyl xylan esterase (AXE1) AD2_00626 PF00005 ABC transporter AD2_00628 PF13426 PAS domain AD2_00628 PF00672 HAMP domain AD2_00628 PF00512 His Kinase A (phospho-acceptor) domain AD2_00628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00629 PF00072 Response regulator receiver domain AD2_00629 PF00486 Transcriptional regulatory protein, C terminal AD2_00630 PF06866 Protein of unknown function (DUF1256) AD2_00633 PF13419 Haloacid dehalogenase-like hydrolase AD2_00635 PF00092 von Willebrand factor type A domain AD2_00635 PF12034 Domain of unknown function (DUF3520) AD2_00635 PF12450 von Willebrand factor AD2_00636 PF04055 Radical SAM superfamily AD2_00636 PF13186 Iron-sulfur cluster-binding domain AD2_00637 PF00942 Cellulose binding domain AD2_00637 PF00963 Cohesin domain AD2_00637 PF00404 Dockerin type I domain AD2_00638 PF00395 S-layer homology domain AD2_00638 PF00963 Cohesin domain AD2_00639 PF00395 S-layer homology domain AD2_00639 PF00963 Cohesin domain AD2_00640 PF00395 S-layer homology domain AD2_00640 PF00963 Cohesin domain AD2_00644 PF01170 Putative RNA methylase family UPF0020 AD2_00644 PF02926 THUMP domain AD2_00645 PF00072 Response regulator receiver domain AD2_00645 PF04397 LytTr DNA-binding domain AD2_00646 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AD2_00647 PF08769 Sporulation initiation factor Spo0A C terminal AD2_00647 PF00072 Response regulator receiver domain AD2_00648 PF00216 Bacterial DNA-binding protein AD2_00650 PF05681 Fumarate hydratase (Fumerase) AD2_00651 PF05681 Fumarate hydratase (Fumerase) AD2_00651 PF05683 Fumarase C-terminus AD2_00653 PF00709 Adenylosuccinate synthetase AD2_00654 PF01797 Transposase IS200 like AD2_00655 PF00535 Glycosyl transferase family 2 AD2_00658 PF00535 Glycosyl transferase family 2 AD2_00660 PF00535 Glycosyl transferase family 2 AD2_00661 PF01678 Diaminopimelate epimerase AD2_00662 PF00155 Aminotransferase class I and II AD2_00663 PF03816 Cell envelope-related transcriptional attenuator domain AD2_00665 PF01869 BadF/BadG/BcrA/BcrD ATPase family AD2_00666 PF06508 Queuosine biosynthesis protein QueC AD2_00667 PF01242 6-pyruvoyl tetrahydropterin synthase AD2_00668 PF04055 Radical SAM superfamily AD2_00669 PF03167 Uracil DNA glycosylase superfamily AD2_00670 PF03167 Uracil DNA glycosylase superfamily AD2_00673 PF00899 ThiF family AD2_00674 PF01797 Transposase IS200 like AD2_00677 PF04041 beta-1,4-mannooligosaccharide phosphorylase AD2_00678 PF00483 Nucleotidyl transferase AD2_00681 PF01238 Phosphomannose isomerase type I AD2_00682 PF02535 ZIP Zinc transporter AD2_00683 PF01814 Hemerythrin HHE cation binding domain AD2_00684 PF00301 Rubredoxin AD2_00684 PF01613 Flavin reductase like domain AD2_00685 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AD2_00685 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AD2_00685 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AD2_00685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AD2_00685 PF10371 Domain of unknown function AD2_00687 PF00963 Cohesin domain AD2_00687 PF00395 S-layer homology domain AD2_00689 PF00501 AMP-binding enzyme AD2_00689 PF13193 AMP-binding enzyme C-terminal domain AD2_00690 PF00011 Hsp20/alpha crystallin family AD2_00691 PF01467 Cytidylyltransferase-like AD2_00691 PF00293 NUDIX domain AD2_00694 PF03600 Citrate transporter AD2_00697 PF00404 Dockerin type I domain AD2_00697 PF01270 Glycosyl hydrolases family 8 AD2_00698 PF08386 TAP-like protein AD2_00698 PF00561 alpha/beta hydrolase fold AD2_00701 PF00082 Subtilase family AD2_00701 PF05922 Peptidase inhibitor I9 AD2_00705 PF13472 GDSL-like Lipase/Acylhydrolase family AD2_00708 PF12833 Helix-turn-helix domain AD2_00708 PF06445 GyrI-like small molecule binding domain AD2_00711 PF00005 ABC transporter AD2_00711 PF00664 ABC transporter transmembrane region AD2_00712 PF00005 ABC transporter AD2_00712 PF00664 ABC transporter transmembrane region AD2_00713 PF07687 Peptidase dimerisation domain AD2_00713 PF01546 Peptidase family M20/M25/M40 AD2_00714 PF03186 CobD/Cbib protein AD2_00715 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AD2_00716 PF02654 Cobalamin-5-phosphate synthase AD2_00717 PF00300 Histidine phosphatase superfamily (branch 1) AD2_00719 PF12706 Beta-lactamase superfamily domain AD2_00720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_00720 PF00672 HAMP domain AD2_00720 PF02743 Cache domain AD2_00721 PF00682 HMGL-like AD2_00722 PF00330 Aconitase family (aconitate hydratase) AD2_00723 PF07729 FCD domain AD2_00723 PF00392 Bacterial regulatory proteins, gntR family AD2_00724 PF01189 16S rRNA methyltransferase RsmB/F AD2_00724 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AD2_00724 PF17126 RsmF rRNA methyltransferase first C-terminal domain AD2_00725 PF00849 RNA pseudouridylate synthase AD2_00725 PF01479 S4 domain AD2_00728 PF12833 Helix-turn-helix domain AD2_00728 PF00072 Response regulator receiver domain AD2_00730 PF00483 Nucleotidyl transferase AD2_00731 PF00483 Nucleotidyl transferase AD2_00732 PF00781 Diacylglycerol kinase catalytic domain AD2_00734 PF00005 ABC transporter AD2_00736 PF00005 ABC transporter AD2_00736 PF02687 FtsX-like permease family AD2_00736 PF12704 MacB-like periplasmic core domain AD2_00739 PF04239 Protein of unknown function (DUF421) AD2_00740 PF00269 Small, acid-soluble spore proteins, alpha/beta type AD2_00743 PF00768 D-alanyl-D-alanine carboxypeptidase AD2_00743 PF07943 Penicillin-binding protein 5, C-terminal domain AD2_00745 PF02080 TrkA-C domain AD2_00745 PF02254 TrkA-N domain AD2_00746 PF02386 Cation transport protein AD2_00747 PF01702 Queuine tRNA-ribosyltransferase AD2_00752 PF13538 UvrD-like helicase C-terminal domain AD2_00752 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AD2_00752 PF14490 Helix-hairpin-helix containing domain AD2_00761 PF01594 AI-2E family transporter AD2_00762 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AD2_00762 PF02272 DHHA1 domain AD2_00762 PF01411 tRNA synthetases class II (A) AD2_00780 PF00872 Transposase, Mutator family AD2_00797 PF00872 Transposase, Mutator family AD2_00802 PF00872 Transposase, Mutator family AD2_00803 PF01266 FAD dependent oxidoreductase AD2_00803 PF00355 Rieske [2Fe-2S] domain AD2_00806 PF00528 Binding-protein-dependent transport system inner membrane component AD2_00807 PF00005 ABC transporter AD2_00811 PF01636 Phosphotransferase enzyme family AD2_00816 PF13180 PDZ domain AD2_00824 PF04542 Sigma-70 region 2 AD2_00824 PF08281 Sigma-70, region 4 AD2_00825 PF13739 Deacetylase PdaC AD2_00825 PF11738 Protein of unknown function (DUF3298) AD2_00829 PF01797 Transposase IS200 like AD2_00833 PF00232 Glycosyl hydrolase family 1 AD2_00835 PF03591 AzlC protein AD2_00836 PF03030 Inorganic H+ pyrophosphatase AD2_00838 PF01594 AI-2E family transporter AD2_00840 PF01797 Transposase IS200 like AD2_00841 PF06271 RDD family AD2_00842 PF01343 Peptidase family S49 AD2_00843 PF02659 Putative manganese efflux pump AD2_00846 PF00005 ABC transporter AD2_00846 PF13732 Domain of unknown function (DUF4162) AD2_00849 PF00291 Pyridoxal-phosphate dependent enzyme AD2_00850 PF00290 Tryptophan synthase alpha chain AD2_00851 PF01545 Cation efflux family AD2_00851 PF16916 Dimerisation domain of Zinc Transporter AD2_00852 PF00512 His Kinase A (phospho-acceptor) domain AD2_00852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00852 PF00989 PAS fold AD2_00852 PF00672 HAMP domain AD2_00853 PF00072 Response regulator receiver domain AD2_00853 PF00486 Transcriptional regulatory protein, C terminal AD2_00856 PF08757 CotH kinase protein AD2_00857 PF02421 Ferrous iron transport protein B AD2_00857 PF17910 FeoB cytosolic helical domain AD2_00857 PF07664 Ferrous iron transport protein B C terminus AD2_00857 PF07670 Nucleoside recognition AD2_00859 PF02742 Iron dependent repressor, metal binding and dimerisation domain AD2_00859 PF01325 Iron dependent repressor, N-terminal DNA binding domain AD2_00861 PF07745 Glycosyl hydrolase family 53 AD2_00863 PF00404 Dockerin type I domain AD2_00864 PF08437 Glycosyl transferase family 8 C-terminal AD2_00864 PF01501 Glycosyl transferase family 8 AD2_00865 PF13091 PLD-like domain AD2_00866 PF00072 Response regulator receiver domain AD2_00866 PF00486 Transcriptional regulatory protein, C terminal AD2_00867 PF13426 PAS domain AD2_00867 PF00512 His Kinase A (phospho-acceptor) domain AD2_00867 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00867 PF00672 HAMP domain AD2_00868 PF00682 HMGL-like AD2_00868 PF08502 LeuA allosteric (dimerisation) domain AD2_00869 PF12146 Serine aminopeptidase, S33 AD2_00870 PF01743 Poly A polymerase head domain AD2_00870 PF12627 Probable RNA and SrmB- binding site of polymerase A AD2_00870 PF13735 tRNA nucleotidyltransferase domain 2 putative AD2_00871 PF01371 Trp repressor protein AD2_00874 PF07517 SecA DEAD-like domain AD2_00874 PF02810 SEC-C motif AD2_00874 PF01043 SecA preprotein cross-linking domain AD2_00874 PF07516 SecA Wing and Scaffold domain AD2_00875 PF08245 Mur ligase middle domain AD2_00875 PF02875 Mur ligase family, glutamate ligase domain AD2_00877 PF01734 Patatin-like phospholipase AD2_00878 PF14821 Threonine synthase N terminus AD2_00878 PF00291 Pyridoxal-phosphate dependent enzyme AD2_00879 PF00072 Response regulator receiver domain AD2_00880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AD2_00881 PF01966 HD domain AD2_00883 PF01842 ACT domain AD2_00883 PF03447 Homoserine dehydrogenase, NAD binding domain AD2_00883 PF00742 Homoserine dehydrogenase AD2_00884 PF13840 ACT domain AD2_00884 PF00696 Amino acid kinase family AD2_00891 PF05593 RHS Repeat AD2_00894 PF01230 HIT domain AD2_00895 PF00395 S-layer homology domain AD2_00895 PF00963 Cohesin domain AD2_00896 PF01797 Transposase IS200 like AD2_00898 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AD2_00901 PF13614 AAA domain AD2_00903 PF01370 NAD dependent epimerase/dehydratase family AD2_00907 PF00534 Glycosyl transferases group 1 AD2_00909 PF00535 Glycosyl transferase family 2 AD2_00912 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AD2_00912 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AD2_00912 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AD2_00914 PF00436 Single-strand binding protein family AD2_00915 PF02397 Bacterial sugar transferase AD2_00916 PF01165 Ribosomal protein S21 AD2_00918 PF01368 DHH family AD2_00918 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AD2_00918 PF17768 RecJ OB domain AD2_00918 PF02272 DHHA1 domain AD2_00919 PF00156 Phosphoribosyl transferase domain AD2_00920 PF02824 TGS domain AD2_00920 PF04607 Region found in RelA / SpoT proteins AD2_00920 PF13291 ACT domain AD2_00921 PF02580 D-Tyr-tRNA(Tyr) deacylase AD2_00922 PF00753 Metallo-beta-lactamase superfamily AD2_00923 PF04055 Radical SAM superfamily AD2_00925 PF00437 Type II/IV secretion system protein AD2_00933 PF13393 Histidyl-tRNA synthetase AD2_00933 PF03129 Anticodon binding domain AD2_00934 PF02938 GAD domain AD2_00934 PF00152 tRNA synthetases class II (D, K and N) AD2_00934 PF01336 OB-fold nucleic acid binding domain AD2_00935 PF10502 Signal peptidase, peptidase S26 AD2_00940 PF00679 Elongation factor G C-terminus AD2_00940 PF00009 Elongation factor Tu GTP binding domain AD2_00940 PF03144 Elongation factor Tu domain 2 AD2_00940 PF06421 GTP-binding protein LepA C-terminus AD2_00941 PF06969 HemN C-terminal domain AD2_00941 PF04055 Radical SAM superfamily AD2_00942 PF01628 HrcA protein C terminal domain AD2_00943 PF01025 GrpE AD2_00944 PF00012 Hsp70 protein AD2_00945 PF01556 DnaJ C terminal domain AD2_00945 PF00684 DnaJ central domain AD2_00945 PF00226 DnaJ domain AD2_00947 PF04452 RNA methyltransferase AD2_00948 PF00072 Response regulator receiver domain AD2_00950 PF08340 Domain of unknown function (DUF1732) AD2_00950 PF03755 YicC-like family, N-terminal region AD2_00951 PF04025 Domain of unknown function (DUF370) AD2_00952 PF00625 Guanylate kinase AD2_00953 PF01192 RNA polymerase Rpb6 AD2_00954 PF02441 Flavoprotein AD2_00954 PF04127 DNA / pantothenate metabolism flavoprotein AD2_00955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AD2_00955 PF03129 Anticodon binding domain AD2_00956 PF17203 Single cache domain 3 AD2_00956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00956 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AD2_00956 PF00989 PAS fold AD2_00959 PF04055 Radical SAM superfamily AD2_00959 PF13186 Iron-sulfur cluster-binding domain AD2_00960 PF02896 PEP-utilising enzyme, TIM barrel domain AD2_00960 PF00391 PEP-utilising enzyme, mobile domain AD2_00960 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AD2_00961 PF00331 Glycosyl hydrolase family 10 AD2_00961 PF02018 Carbohydrate binding domain AD2_00961 PF06452 Carbohydrate family 9 binding domain-like AD2_00961 PF00395 S-layer homology domain AD2_00963 PF07883 Cupin domain AD2_00964 PF13638 PIN domain AD2_00964 PF02562 PhoH-like protein AD2_00965 PF00534 Glycosyl transferases group 1 AD2_00965 PF13439 Glycosyltransferase Family 4 AD2_00966 PF00753 Metallo-beta-lactamase superfamily AD2_00966 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AD2_00966 PF17770 Ribonuclease J C-terminal domain AD2_00967 PF05636 HIGH Nucleotidyl Transferase AD2_00970 PF14693 Ribosomal protein TL5, C-terminal domain AD2_00970 PF01386 Ribosomal L25p family AD2_00971 PF02277 Phosphoribosyltransferase AD2_00973 PF01812 5-formyltetrahydrofolate cyclo-ligase family AD2_00976 PF00072 Response regulator receiver domain AD2_00977 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase AD2_00977 PF01676 Metalloenzyme superfamily AD2_00981 PF00072 Response regulator receiver domain AD2_00981 PF00486 Transcriptional regulatory protein, C terminal AD2_00982 PF00672 HAMP domain AD2_00982 PF00512 His Kinase A (phospho-acceptor) domain AD2_00982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_00983 PF13180 PDZ domain AD2_00984 PF01966 HD domain AD2_00985 PF08323 Starch synthase catalytic domain AD2_00985 PF00534 Glycosyl transferases group 1 AD2_00986 PF00730 HhH-GPD superfamily base excision DNA repair protein AD2_00986 PF00633 Helix-hairpin-helix motif AD2_00987 PF00990 Diguanylate cyclase, GGDEF domain AD2_00989 PF04226 Transglycosylase associated protein AD2_00990 PF00830 Ribosomal L28 family AD2_00991 PF00270 DEAD/DEAH box helicase AD2_00991 PF00271 Helicase conserved C-terminal domain AD2_00991 PF17191 RecG wedge domain AD2_00993 PF01467 Cytidylyltransferase-like AD2_00995 PF07670 Nucleoside recognition AD2_00996 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain AD2_00996 PF12791 Anti-sigma factor N-terminus AD2_00997 PF04542 Sigma-70 region 2 AD2_00998 PF03422 Carbohydrate binding module (family 6) AD2_00998 PF04616 Glycosyl hydrolases family 43 AD2_01001 PF05384 Sensor protein DegS AD2_01001 PF07730 Histidine kinase AD2_01001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01002 PF00072 Response regulator receiver domain AD2_01002 PF00196 Bacterial regulatory proteins, luxR family AD2_01003 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_01003 PF02743 Cache domain AD2_01003 PF00672 HAMP domain AD2_01004 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AD2_01004 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AD2_01004 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AD2_01004 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AD2_01005 PF07733 Bacterial DNA polymerase III alpha NTPase domain AD2_01005 PF14579 Helix-hairpin-helix motif AD2_01005 PF02811 PHP domain AD2_01005 PF01336 OB-fold nucleic acid binding domain AD2_01005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AD2_01006 PF02081 Tryptophan RNA-binding attenuator protein AD2_01008 PF00365 Phosphofructokinase AD2_01010 PF01066 CDP-alcohol phosphatidyltransferase AD2_01013 PF14310 Fibronectin type III-like domain AD2_01013 PF01915 Glycosyl hydrolase family 3 C-terminal domain AD2_01013 PF00933 Glycosyl hydrolase family 3 N terminal domain AD2_01018 PF00860 Permease family AD2_01019 PF00731 AIR carboxylase AD2_01020 PF00156 Phosphoribosyl transferase domain AD2_01021 PF00586 AIR synthase related protein, N-terminal domain AD2_01021 PF02769 AIR synthase related protein, C-terminal domain AD2_01022 PF00551 Formyl transferase AD2_01023 PF01808 AICARFT/IMPCHase bienzyme AD2_01023 PF02142 MGS-like domain AD2_01024 PF02843 Phosphoribosylglycinamide synthetase, C domain AD2_01024 PF02844 Phosphoribosylglycinamide synthetase, N domain AD2_01024 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AD2_01025 PF00535 Glycosyl transferase family 2 AD2_01027 PF01467 Cytidylyltransferase-like AD2_01028 PF01966 HD domain AD2_01031 PF08264 Anticodon-binding domain of tRNA AD2_01031 PF00133 tRNA synthetases class I (I, L, M and V) AD2_01031 PF13603 Leucyl-tRNA synthetase, Domain 2 AD2_01031 PF09334 tRNA synthetases class I (M) AD2_01032 PF00704 Glycosyl hydrolases family 18 AD2_01032 PF00041 Fibronectin type III domain AD2_01033 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_01033 PF12729 Four helix bundle sensory module for signal transduction AD2_01033 PF00672 HAMP domain AD2_01035 PF00501 AMP-binding enzyme AD2_01036 PF07943 Penicillin-binding protein 5, C-terminal domain AD2_01036 PF00768 D-alanyl-D-alanine carboxypeptidase AD2_01037 PF10531 SLBB domain AD2_01040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AD2_01040 PF02824 TGS domain AD2_01040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AD2_01040 PF03129 Anticodon binding domain AD2_01041 PF00303 Thymidylate synthase AD2_01042 PF00186 Dihydrofolate reductase AD2_01043 PF00707 Translation initiation factor IF-3, C-terminal domain AD2_01043 PF05198 Translation initiation factor IF-3, N-terminal domain AD2_01044 PF01632 Ribosomal protein L35 AD2_01045 PF00453 Ribosomal protein L20 AD2_01046 PF00588 SpoU rRNA Methylase family AD2_01046 PF08032 RNA 2'-O ribose methyltransferase substrate binding AD2_01047 PF10091 Putative glucoamylase AD2_01047 PF06165 Glycosyltransferase family 36 AD2_01047 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AD2_01050 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AD2_01051 PF07724 AAA domain (Cdc48 subfamily) AD2_01051 PF00004 ATPase family associated with various cellular activities (AAA) AD2_01051 PF17871 AAA lid domain AD2_01051 PF10431 C-terminal, D2-small domain, of ClpB protein AD2_01051 PF02861 Clp amino terminal domain, pathogenicity island component AD2_01052 PF02617 ATP-dependent Clp protease adaptor protein ClpS AD2_01053 PF01925 Sulfite exporter TauE/SafE AD2_01054 PF01925 Sulfite exporter TauE/SafE AD2_01057 PF00291 Pyridoxal-phosphate dependent enzyme AD2_01063 PF08298 PrkA AAA domain AD2_01063 PF06798 PrkA serine protein kinase C-terminal domain AD2_01064 PF04285 Protein of unknown function (DUF444) AD2_01065 PF04293 SpoVR like protein AD2_01067 PF01048 Phosphorylase superfamily AD2_01068 PF05221 S-adenosyl-L-homocysteine hydrolase AD2_01068 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AD2_01069 PF01979 Amidohydrolase family AD2_01077 PF00872 Transposase, Mutator family AD2_01079 PF13419 Haloacid dehalogenase-like hydrolase AD2_01081 PF00005 ABC transporter AD2_01084 PF07859 alpha/beta hydrolase fold AD2_01087 PF07726 ATPase family associated with various cellular activities (AAA) AD2_01087 PF17863 AAA lid domain AD2_01089 PF11992 Domain of unknown function (DUF3488) AD2_01089 PF13559 Domain of unknown function (DUF4129) AD2_01089 PF01841 Transglutaminase-like superfamily AD2_01091 PF08141 Small acid-soluble spore protein H family AD2_01093 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AD2_01093 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AD2_01093 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AD2_01094 PF13690 Chemotaxis phosphatase CheX AD2_01101 PF01113 Dihydrodipicolinate reductase, N-terminus AD2_01101 PF05173 Dihydrodipicolinate reductase, C-terminus AD2_01104 PF01871 AMMECR1 AD2_01104 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AD2_01106 PF02457 DisA bacterial checkpoint controller nucleotide-binding AD2_01109 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AD2_01109 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AD2_01109 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AD2_01109 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AD2_01110 PF01380 SIS domain AD2_01111 PF01022 Bacterial regulatory protein, arsR family AD2_01112 PF01758 Sodium Bile acid symporter family AD2_01113 PF01451 Low molecular weight phosphotyrosine protein phosphatase AD2_01118 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AD2_01118 PF00437 Type II/IV secretion system protein AD2_01119 PF00437 Type II/IV secretion system protein AD2_01120 PF00482 Type II secretion system (T2SS), protein F AD2_01121 PF07963 Prokaryotic N-terminal methylation motif AD2_01121 PF00114 Pilin (bacterial filament) AD2_01128 PF00574 Clp protease AD2_01130 PF17854 FtsK alpha domain AD2_01130 PF09397 Ftsk gamma domain AD2_01130 PF01580 FtsK/SpoIIIE family AD2_01131 PF11842 Domain of unknown function (DUF3362) AD2_01131 PF04055 Radical SAM superfamily AD2_01131 PF08497 Radical SAM N-terminal AD2_01132 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AD2_01132 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AD2_01134 PF00013 KH domain AD2_01134 PF01966 HD domain AD2_01134 PF12072 Domain of unknown function (DUF3552) AD2_01135 PF13277 YmdB-like protein AD2_01136 PF04232 Stage V sporulation protein S (SpoVS) AD2_01139 PF16363 GDP-mannose 4,6 dehydratase AD2_01140 PF00534 Glycosyl transferases group 1 AD2_01140 PF13439 Glycosyltransferase Family 4 AD2_01142 PF01636 Phosphotransferase enzyme family AD2_01146 PF00483 Nucleotidyl transferase AD2_01150 PF05949 Bacterial protein of unknown function (DUF881) AD2_01151 PF01522 Polysaccharide deacetylase AD2_01152 PF07873 YabP family AD2_01154 PF02562 PhoH-like protein AD2_01155 PF07698 7TM receptor with intracellular HD hydrolase AD2_01155 PF01966 HD domain AD2_01155 PF07697 7TM-HD extracellular AD2_01156 PF02130 Uncharacterized protein family UPF0054 AD2_01157 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AD2_01158 PF01926 50S ribosome-binding GTPase AD2_01158 PF07650 KH domain AD2_01160 PF11967 Recombination protein O N terminal AD2_01160 PF02565 Recombination protein O C terminal AD2_01162 PF00266 Aminotransferase class-V AD2_01163 PF02926 THUMP domain AD2_01163 PF02568 Thiamine biosynthesis protein (ThiI) AD2_01164 PF04294 VanW like protein AD2_01168 PF00464 Serine hydroxymethyltransferase AD2_01169 PF04024 PspC domain AD2_01170 PF13559 Domain of unknown function (DUF4129) AD2_01170 PF11992 Domain of unknown function (DUF3488) AD2_01170 PF01841 Transglutaminase-like superfamily AD2_01172 PF17863 AAA lid domain AD2_01172 PF07726 ATPase family associated with various cellular activities (AAA) AD2_01173 PF00056 lactate/malate dehydrogenase, NAD binding domain AD2_01173 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AD2_01174 PF02464 Competence-damaged protein AD2_01174 PF00994 Probable molybdopterin binding domain AD2_01174 PF18146 Damage-inducible protein CinA KH domain AD2_01175 PF03023 Lipid II flippase MurJ AD2_01176 PF00154 recA bacterial DNA recombination protein AD2_01177 PF02631 RecX family AD2_01178 PF01694 Rhomboid family AD2_01186 PF08245 Mur ligase middle domain AD2_01187 PF06144 DNA polymerase III, delta subunit AD2_01188 PF01649 Ribosomal protein S20 AD2_01189 PF03418 Germination protease AD2_01190 PF11741 AMIN domain AD2_01190 PF01520 N-acetylmuramoyl-L-alanine amidase AD2_01192 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AD2_01192 PF03120 NAD-dependent DNA ligase OB-fold domain AD2_01192 PF00533 BRCA1 C Terminus (BRCT) domain AD2_01192 PF12826 Helix-hairpin-helix motif AD2_01192 PF01653 NAD-dependent DNA ligase adenylation domain AD2_01195 PF02686 Glu-tRNAGln amidotransferase C subunit AD2_01196 PF01425 Amidase AD2_01197 PF02934 GatB/GatE catalytic domain AD2_01197 PF02637 GatB domain AD2_01199 PF01515 Phosphate acetyl/butaryl transferase AD2_01200 PF00871 Acetokinase family AD2_01202 PF01783 Ribosomal L32p protein family AD2_01204 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AD2_01204 PF01926 50S ribosome-binding GTPase AD2_01205 PF02660 Glycerol-3-phosphate acyltransferase AD2_01206 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AD2_01206 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AD2_01207 PF09547 Stage IV sporulation protein A (spore_IV_A) AD2_01208 PF01547 Bacterial extracellular solute-binding protein AD2_01209 PF00528 Binding-protein-dependent transport system inner membrane component AD2_01210 PF00528 Binding-protein-dependent transport system inner membrane component AD2_01211 PF04122 Putative cell wall binding repeat 2 AD2_01211 PF01520 N-acetylmuramoyl-L-alanine amidase AD2_01214 PF01713 Smr domain AD2_01214 PF00488 MutS domain V AD2_01215 PF01594 AI-2E family transporter AD2_01216 PF04542 Sigma-70 region 2 AD2_01216 PF04545 Sigma-70, region 4 AD2_01217 PF00905 Penicillin binding protein transpeptidase domain AD2_01217 PF03717 Penicillin-binding Protein dimerisation domain AD2_01218 PF16325 Peptidase family U32 C-terminal domain AD2_01218 PF01136 Peptidase family U32 AD2_01219 PF01596 O-methyltransferase AD2_01220 PF02618 YceG-like family AD2_01221 PF14492 Elongation Factor G, domain II AD2_01221 PF00679 Elongation factor G C-terminus AD2_01221 PF00009 Elongation factor Tu GTP binding domain AD2_01221 PF03144 Elongation factor Tu domain 2 AD2_01222 PF00318 Ribosomal protein S2 AD2_01223 PF00889 Elongation factor TS AD2_01224 PF00696 Amino acid kinase family AD2_01225 PF01765 Ribosome recycling factor AD2_01227 PF01255 Putative undecaprenyl diphosphate synthase AD2_01229 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AD2_01229 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AD2_01229 PF13288 DXP reductoisomerase C-terminal domain AD2_01230 PF02163 Peptidase family M50 AD2_01230 PF13180 PDZ domain AD2_01231 PF04551 GcpE protein AD2_01232 PF11490 DNA polymerase III polC-type N-terminus II AD2_01232 PF07733 Bacterial DNA polymerase III alpha NTPase domain AD2_01232 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AD2_01232 PF14579 Helix-hairpin-helix motif AD2_01232 PF01336 OB-fold nucleic acid binding domain AD2_01232 PF00929 Exonuclease AD2_01232 PF02811 PHP domain AD2_01234 PF17384 RimP C-terminal SH3 domain AD2_01234 PF02576 RimP N-terminal domain AD2_01235 PF00575 S1 RNA binding domain AD2_01235 PF08529 NusA N-terminal domain AD2_01235 PF13184 NusA-like KH domain AD2_01236 PF04296 Protein of unknown function (DUF448) AD2_01237 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AD2_01238 PF04760 Translation initiation factor IF-2, N-terminal region AD2_01238 PF11987 Translation-initiation factor 2 AD2_01238 PF00009 Elongation factor Tu GTP binding domain AD2_01239 PF02033 Ribosome-binding factor A AD2_01240 PF01368 DHH family AD2_01240 PF02272 DHHA1 domain AD2_01241 PF01509 TruB family pseudouridylate synthase (N terminal domain) AD2_01241 PF16198 tRNA pseudouridylate synthase B C-terminal domain AD2_01242 PF01687 Riboflavin kinase AD2_01242 PF06574 FAD synthetase AD2_01244 PF05193 Peptidase M16 inactive domain AD2_01245 PF00675 Insulinase (Peptidase family M16) AD2_01245 PF05193 Peptidase M16 inactive domain AD2_01246 PF01790 Prolipoprotein diacylglyceryl transferase AD2_01248 PF01098 Cell cycle protein AD2_01249 PF02381 MraZ protein, putative antitoxin-like AD2_01250 PF01795 MraW methylase family AD2_01252 PF03717 Penicillin-binding Protein dimerisation domain AD2_01252 PF03793 PASTA domain AD2_01252 PF00905 Penicillin binding protein transpeptidase domain AD2_01253 PF01225 Mur ligase family, catalytic domain AD2_01253 PF02875 Mur ligase family, glutamate ligase domain AD2_01253 PF08245 Mur ligase middle domain AD2_01254 PF01225 Mur ligase family, catalytic domain AD2_01254 PF02875 Mur ligase family, glutamate ligase domain AD2_01254 PF08245 Mur ligase middle domain AD2_01255 PF00953 Glycosyl transferase family 4 AD2_01256 PF01098 Cell cycle protein AD2_01257 PF04101 Glycosyltransferase family 28 C-terminal domain AD2_01257 PF03033 Glycosyltransferase family 28 N-terminal domain AD2_01258 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AD2_01261 PF00872 Transposase, Mutator family AD2_01263 PF13361 UvrD-like helicase C-terminal domain AD2_01263 PF00580 UvrD/REP helicase N-terminal domain AD2_01265 PF12557 Cob(I)alamin adenosyltransferase N terminal AD2_01265 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AD2_01266 PF13840 ACT domain AD2_01266 PF00696 Amino acid kinase family AD2_01267 PF05173 Dihydrodipicolinate reductase, C-terminus AD2_01267 PF01113 Dihydrodipicolinate reductase, N-terminus AD2_01268 PF00701 Dihydrodipicolinate synthetase family AD2_01269 PF01118 Semialdehyde dehydrogenase, NAD binding domain AD2_01269 PF02774 Semialdehyde dehydrogenase, dimerisation domain AD2_01270 PF04122 Putative cell wall binding repeat 2 AD2_01270 PF08486 Stage II sporulation protein AD2_01271 PF02547 Queuosine biosynthesis protein AD2_01272 PF01702 Queuine tRNA-ribosyltransferase AD2_01273 PF02699 Preprotein translocase subunit AD2_01276 PF00156 Phosphoribosyl transferase domain AD2_01278 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AD2_01278 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AD2_01279 PF01979 Amidohydrolase family AD2_01280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AD2_01281 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AD2_01281 PF00117 Glutamine amidotransferase class-I AD2_01282 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AD2_01282 PF02142 MGS-like domain AD2_01282 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AD2_01283 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AD2_01284 PF01180 Dihydroorotate dehydrogenase AD2_01285 PF00300 Histidine phosphatase superfamily (branch 1) AD2_01289 PF04055 Radical SAM superfamily AD2_01289 PF18693 TRAM domain AD2_01289 PF00919 Uncharacterized protein family UPF0004 AD2_01290 PF01066 CDP-alcohol phosphatidyltransferase AD2_01293 PF03061 Thioesterase superfamily AD2_01294 PF02504 Fatty acid synthesis protein AD2_01295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AD2_01295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AD2_01296 PF00698 Acyl transferase domain AD2_01298 PF00550 Phosphopantetheine attachment site AD2_01299 PF00109 Beta-ketoacyl synthase, N-terminal domain AD2_01299 PF02801 Beta-ketoacyl synthase, C-terminal domain AD2_01300 PF00035 Double-stranded RNA binding motif AD2_01300 PF14622 Ribonuclease-III-like AD2_01302 PF04232 Stage V sporulation protein S (SpoVS) AD2_01303 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AD2_01304 PF02463 RecF/RecN/SMC N terminal domain AD2_01304 PF06470 SMC proteins Flexible Hinge Domain AD2_01305 PF00448 SRP54-type protein, GTPase domain AD2_01305 PF02881 SRP54-type protein, helical bundle domain AD2_01309 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain AD2_01316 PF00749 tRNA synthetases class I (E and Q), catalytic domain AD2_01316 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AD2_01320 PF02018 Carbohydrate binding domain AD2_01320 PF00331 Glycosyl hydrolase family 10 AD2_01320 PF00404 Dockerin type I domain AD2_01320 PF00756 Putative esterase AD2_01321 PF02578 Multi-copper polyphenol oxidoreductase laccase AD2_01322 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AD2_01323 PF01252 Signal peptidase (SPase) II AD2_01324 PF01479 S4 domain AD2_01324 PF00849 RNA pseudouridylate synthase AD2_01326 PF01966 HD domain AD2_01326 PF00013 KH domain AD2_01326 PF12072 Domain of unknown function (DUF3552) AD2_01327 PF07549 SecD/SecF GG Motif AD2_01327 PF02355 Protein export membrane protein AD2_01328 PF07549 SecD/SecF GG Motif AD2_01328 PF02355 Protein export membrane protein AD2_01329 PF02548 Ketopantoate hydroxymethyltransferase AD2_01330 PF02569 Pantoate-beta-alanine ligase AD2_01331 PF02261 Aspartate decarboxylase AD2_01333 PF11871 Domain of unknown function (DUF3391) AD2_01333 PF01966 HD domain AD2_01334 PF01966 HD domain AD2_01334 PF13286 Phosphohydrolase-associated domain AD2_01336 PF10410 DnaB-helicase binding domain of primase AD2_01336 PF08275 DNA primase catalytic core, N-terminal domain AD2_01336 PF01807 CHC2 zinc finger AD2_01337 PF04542 Sigma-70 region 2 AD2_01337 PF00140 Sigma-70 factor, region 1.2 AD2_01337 PF03979 Sigma-70 factor, region 1.1 AD2_01337 PF04539 Sigma-70 region 3 AD2_01337 PF04545 Sigma-70, region 4 AD2_01340 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AD2_01341 PF01784 NIF3 (NGG1p interacting factor 3) AD2_01342 PF00072 Response regulator receiver domain AD2_01343 PF08281 Sigma-70, region 4 AD2_01343 PF04542 Sigma-70 region 2 AD2_01347 PF01367 5'-3' exonuclease, C-terminal SAM fold AD2_01347 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AD2_01347 PF00476 DNA polymerase family A AD2_01348 PF01121 Dephospho-CoA kinase AD2_01351 PF00892 EamA-like transporter family AD2_01352 PF00990 Diguanylate cyclase, GGDEF domain AD2_01353 PF18152 DAHP synthase ferredoxin-like domain AD2_01353 PF00793 DAHP synthetase I family AD2_01354 PF01584 CheW-like domain AD2_01355 PF01926 50S ribosome-binding GTPase AD2_01355 PF06071 Protein of unknown function (DUF933) AD2_01357 PF04715 Anthranilate synthase component I, N terminal region AD2_01357 PF00425 chorismate binding enzyme AD2_01358 PF00591 Glycosyl transferase family, a/b domain AD2_01358 PF02885 Glycosyl transferase family, helical bundle domain AD2_01358 PF00117 Glutamine amidotransferase class-I AD2_01359 PF02885 Glycosyl transferase family, helical bundle domain AD2_01359 PF00591 Glycosyl transferase family, a/b domain AD2_01360 PF00218 Indole-3-glycerol phosphate synthase AD2_01361 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AD2_01370 PF00120 Glutamine synthetase, catalytic domain AD2_01370 PF18318 Glutamine synthetase C-terminal domain AD2_01370 PF12437 Glutamine synthetase type III N terminal AD2_01372 PF03816 Cell envelope-related transcriptional attenuator domain AD2_01373 PF02915 Rubrerythrin AD2_01375 PF12127 SigmaW regulon antibacterial AD2_01376 PF01957 NfeD-like C-terminal, partner-binding AD2_01376 PF01972 Serine dehydrogenase proteinase AD2_01377 PF01063 Amino-transferase class IV AD2_01379 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AD2_01379 PF01488 Shikimate / quinate 5-dehydrogenase AD2_01379 PF08501 Shikimate dehydrogenase substrate binding domain AD2_01380 PF00437 Type II/IV secretion system protein AD2_01380 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AD2_01381 PF06750 Bacterial Peptidase A24 N-terminal domain AD2_01381 PF01478 Type IV leader peptidase family AD2_01383 PF01261 Xylose isomerase-like TIM barrel AD2_01384 PF01220 Dehydroquinase class II AD2_01385 PF01321 Creatinase/Prolidase N-terminal domain AD2_01385 PF00557 Metallopeptidase family M24 AD2_01386 PF01132 Elongation factor P (EF-P) OB domain AD2_01386 PF08207 Elongation factor P (EF-P) KOW-like domain AD2_01386 PF09285 Elongation factor P, C-terminal AD2_01388 PF01797 Transposase IS200 like AD2_01391 PF06686 Stage III sporulation protein AC/AD protein family AD2_01392 PF06686 Stage III sporulation protein AC/AD protein family AD2_01393 PF09546 Stage III sporulation protein AE (spore_III_AE) AD2_01397 PF03780 Asp23 family, cell envelope-related function AD2_01400 PF01029 NusB family AD2_01401 PF02601 Exonuclease VII, large subunit AD2_01401 PF13742 OB-fold nucleic acid binding domain AD2_01402 PF02609 Exonuclease VII small subunit AD2_01403 PF00348 Polyprenyl synthetase AD2_01404 PF02681 Divergent PAP2 family AD2_01406 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AD2_01406 PF02779 Transketolase, pyrimidine binding domain AD2_01406 PF02780 Transketolase, C-terminal domain AD2_01407 PF01728 FtsJ-like methyltransferase AD2_01407 PF01479 S4 domain AD2_01409 PF02927 Cellulase N-terminal ig-like domain AD2_01409 PF00404 Dockerin type I domain AD2_01409 PF00759 Glycosyl hydrolase family 9 AD2_01411 PF12891 Glycoside hydrolase family 44 AD2_01411 PF00942 Cellulose binding domain AD2_01411 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_01414 PF00005 ABC transporter AD2_01414 PF13732 Domain of unknown function (DUF4162) AD2_01416 PF00990 Diguanylate cyclase, GGDEF domain AD2_01417 PF01513 ATP-NAD kinase AD2_01418 PF01316 Arginine repressor, DNA binding domain AD2_01418 PF02863 Arginine repressor, C-terminal domain AD2_01419 PF02463 RecF/RecN/SMC N terminal domain AD2_01420 PF17820 PDZ domain AD2_01420 PF05580 SpoIVB peptidase S55 AD2_01421 PF00072 Response regulator receiver domain AD2_01421 PF08769 Sporulation initiation factor Spo0A C terminal AD2_01422 PF00072 Response regulator receiver domain AD2_01423 PF01584 CheW-like domain AD2_01423 PF02895 Signal transducing histidine kinase, homodimeric domain AD2_01423 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01423 PF01627 Hpt domain AD2_01423 PF07194 P2 response regulator binding domain AD2_01424 PF01584 CheW-like domain AD2_01425 PF01739 CheR methyltransferase, SAM binding domain AD2_01425 PF03705 CheR methyltransferase, all-alpha domain AD2_01426 PF01339 CheB methylesterase AD2_01426 PF00072 Response regulator receiver domain AD2_01427 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AD2_01427 PF00072 Response regulator receiver domain AD2_01427 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01427 PF00512 His Kinase A (phospho-acceptor) domain AD2_01427 PF00672 HAMP domain AD2_01427 PF01627 Hpt domain AD2_01428 PF00072 Response regulator receiver domain AD2_01428 PF00486 Transcriptional regulatory protein, C terminal AD2_01430 PF00849 RNA pseudouridylate synthase AD2_01433 PF00872 Transposase, Mutator family AD2_01434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01434 PF00512 His Kinase A (phospho-acceptor) domain AD2_01434 PF00989 PAS fold AD2_01434 PF16736 Single Cache-like AD2_01435 PF00486 Transcriptional regulatory protein, C terminal AD2_01435 PF00072 Response regulator receiver domain AD2_01436 PF00404 Dockerin type I domain AD2_01436 PF13472 GDSL-like Lipase/Acylhydrolase family AD2_01437 PF00657 GDSL-like Lipase/Acylhydrolase AD2_01437 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_01437 PF17996 Carbohydrate esterase 2 N-terminal AD2_01437 PF00404 Dockerin type I domain AD2_01438 PF02903 Alpha amylase, N-terminal ig-like domain AD2_01438 PF00128 Alpha amylase, catalytic domain AD2_01439 PF06838 Methionine gamma-lyase AD2_01441 PF01168 Alanine racemase, N-terminal domain AD2_01442 PF04472 Cell division protein SepF AD2_01444 PF01479 S4 domain AD2_01444 PF17774 Putative RNA-binding domain in YlmH AD2_01445 PF05103 DivIVA protein AD2_01446 PF00133 tRNA synthetases class I (I, L, M and V) AD2_01446 PF06827 Zinc finger found in FPG and IleRS AD2_01446 PF08264 Anticodon-binding domain of tRNA AD2_01447 PF01761 3-dehydroquinate synthase AD2_01450 PF04055 Radical SAM superfamily AD2_01450 PF01938 TRAM domain AD2_01450 PF00919 Uncharacterized protein family UPF0004 AD2_01452 PF02743 Cache domain AD2_01452 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_01452 PF00672 HAMP domain AD2_01454 PF13419 Haloacid dehalogenase-like hydrolase AD2_01455 PF00188 Cysteine-rich secretory protein family AD2_01457 PF01624 MutS domain I AD2_01457 PF05188 MutS domain II AD2_01457 PF05192 MutS domain III AD2_01457 PF05190 MutS family domain IV AD2_01457 PF00488 MutS domain V AD2_01458 PF01119 DNA mismatch repair protein, C-terminal domain AD2_01458 PF08676 MutL C terminal dimerisation domain AD2_01460 PF17209 Hfq protein AD2_01461 PF01726 LexA DNA binding domain AD2_01461 PF00717 Peptidase S24-like AD2_01463 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AD2_01464 PF00448 SRP54-type protein, GTPase domain AD2_01464 PF02881 SRP54-type protein, helical bundle domain AD2_01464 PF02978 Signal peptide binding domain AD2_01465 PF00886 Ribosomal protein S16 AD2_01467 PF01782 RimM N-terminal domain AD2_01467 PF05239 PRC-barrel domain AD2_01468 PF01746 tRNA (Guanine-1)-methyltransferase AD2_01469 PF01245 Ribosomal protein L19 AD2_01470 PF10502 Signal peptidase, peptidase S26 AD2_01471 PF01926 50S ribosome-binding GTPase AD2_01473 PF01351 Ribonuclease HII AD2_01476 PF02021 Uncharacterised protein family UPF0102 AD2_01477 PF04002 RadC-like JAB domain AD2_01478 PF01244 Membrane dipeptidase (Peptidase family M19) AD2_01479 PF00155 Aminotransferase class I and II AD2_01484 PF00005 ABC transporter AD2_01484 PF08402 TOBE domain AD2_01485 PF00528 Binding-protein-dependent transport system inner membrane component AD2_01486 PF00528 Binding-protein-dependent transport system inner membrane component AD2_01487 PF13416 Bacterial extracellular solute-binding protein AD2_01489 PF00404 Dockerin type I domain AD2_01489 PF00759 Glycosyl hydrolase family 9 AD2_01489 PF00942 Cellulose binding domain AD2_01490 PF17820 PDZ domain AD2_01490 PF03572 Peptidase family S41 AD2_01490 PF01471 Putative peptidoglycan binding domain AD2_01491 PF01554 MatE AD2_01493 PF10397 Adenylosuccinate lyase C-terminus AD2_01493 PF00206 Lyase AD2_01494 PF07702 UTRA domain AD2_01494 PF00392 Bacterial regulatory proteins, gntR family AD2_01496 PF00403 Heavy-metal-associated domain AD2_01498 PF01648 4'-phosphopantetheinyl transferase superfamily AD2_01500 PF00395 S-layer homology domain AD2_01500 PF00963 Cohesin domain AD2_01501 PF00963 Cohesin domain AD2_01501 PF00395 S-layer homology domain AD2_01504 PF01264 Chorismate synthase AD2_01505 PF01202 Shikimate kinase AD2_01507 PF01270 Glycosyl hydrolases family 8 AD2_01507 PF00404 Dockerin type I domain AD2_01508 PF02899 Phage integrase, N-terminal SAM-like domain AD2_01508 PF00589 Phage integrase family AD2_01510 PF02127 Aminopeptidase I zinc metalloprotease (M18) AD2_01511 PF01966 HD domain AD2_01513 PF00579 tRNA synthetases class I (W and Y) AD2_01515 PF01592 NifU-like N terminal domain AD2_01516 PF00266 Aminotransferase class-V AD2_01517 PF02082 Transcriptional regulator AD2_01520 PF03705 CheR methyltransferase, all-alpha domain AD2_01520 PF01739 CheR methyltransferase, SAM binding domain AD2_01521 PF00334 Nucleoside diphosphate kinase AD2_01522 PF02675 S-adenosylmethionine decarboxylase AD2_01523 PF02401 LytB protein AD2_01523 PF00575 S1 RNA binding domain AD2_01524 PF01553 Acyltransferase AD2_01525 PF02224 Cytidylate kinase AD2_01530 PF00300 Histidine phosphatase superfamily (branch 1) AD2_01531 PF01418 Helix-turn-helix domain, rpiR family AD2_01531 PF01380 SIS domain AD2_01536 PF00682 HMGL-like AD2_01536 PF02436 Conserved carboxylase domain AD2_01536 PF00364 Biotin-requiring enzyme AD2_01537 PF00364 Biotin-requiring enzyme AD2_01539 PF01039 Carboxyl transferase domain AD2_01541 PF06962 Putative rRNA methylase AD2_01542 PF00491 Arginase family AD2_01543 PF17284 Spermidine synthase tetramerisation domain AD2_01544 PF00849 RNA pseudouridylate synthase AD2_01544 PF01479 S4 domain AD2_01545 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AD2_01548 PF04079 Segregation and condensation complex subunit ScpB AD2_01549 PF02616 Segregation and condensation protein ScpA AD2_01550 PF00579 tRNA synthetases class I (W and Y) AD2_01551 PF02163 Peptidase family M50 AD2_01552 PF12627 Probable RNA and SrmB- binding site of polymerase A AD2_01552 PF01743 Poly A polymerase head domain AD2_01552 PF02272 DHHA1 domain AD2_01552 PF01368 DHH family AD2_01552 PF00571 CBS domain AD2_01553 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AD2_01553 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AD2_01555 PF00571 CBS domain AD2_01555 PF00478 IMP dehydrogenase / GMP reductase domain AD2_01557 PF07943 Penicillin-binding protein 5, C-terminal domain AD2_01557 PF00768 D-alanyl-D-alanine carboxypeptidase AD2_01558 PF02885 Glycosyl transferase family, helical bundle domain AD2_01558 PF00591 Glycosyl transferase family, a/b domain AD2_01558 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AD2_01559 PF01676 Metalloenzyme superfamily AD2_01560 PF02899 Phage integrase, N-terminal SAM-like domain AD2_01560 PF00589 Phage integrase family AD2_01561 PF01944 Stage II sporulation protein M AD2_01562 PF00293 NUDIX domain AD2_01563 PF00075 RNase H AD2_01564 PF14748 Pyrroline-5-carboxylate reductase dimerisation AD2_01564 PF03807 NADP oxidoreductase coenzyme F420-dependent AD2_01569 PF03323 Bacillus/Clostridium GerA spore germination protein AD2_01570 PF01145 SPFH domain / Band 7 family AD2_01571 PF01145 SPFH domain / Band 7 family AD2_01572 PF06725 3D domain AD2_01572 PF03990 G5-linked-Ubiquitin-like domain AD2_01572 PF07501 G5 domain AD2_01574 PF00722 Glycosyl hydrolases family 16 AD2_01574 PF00404 Dockerin type I domain AD2_01575 PF00404 Dockerin type I domain AD2_01581 PF00266 Aminotransferase class-V AD2_01582 PF06968 Biotin and Thiamin Synthesis associated domain AD2_01582 PF04055 Radical SAM superfamily AD2_01584 PF01361 Tautomerase enzyme AD2_01589 PF00749 tRNA synthetases class I (E and Q), catalytic domain AD2_01592 PF02607 B12 binding domain AD2_01592 PF02310 B12 binding domain AD2_01592 PF02965 Vitamin B12 dependent methionine synthase, activation domain AD2_01592 PF00809 Pterin binding enzyme AD2_01592 PF02574 Homocysteine S-methyltransferase AD2_01598 PF00722 Glycosyl hydrolases family 16 AD2_01598 PF00404 Dockerin type I domain AD2_01599 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AD2_01599 PF02806 Alpha amylase, C-terminal all-beta domain AD2_01599 PF00128 Alpha amylase, catalytic domain AD2_01600 PF01580 FtsK/SpoIIIE family AD2_01600 PF12538 DNA transporter AD2_01604 PF03793 PASTA domain AD2_01604 PF00069 Protein kinase domain AD2_01610 PF00437 Type II/IV secretion system protein AD2_01610 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AD2_01614 PF00759 Glycosyl hydrolase family 9 AD2_01614 PF00942 Cellulose binding domain AD2_01614 PF00404 Dockerin type I domain AD2_01615 PF00942 Cellulose binding domain AD2_01615 PF12891 Glycoside hydrolase family 44 AD2_01616 PF01258 Prokaryotic dksA/traR C4-type zinc finger AD2_01617 PF01048 Phosphorylase superfamily AD2_01618 PF01008 Initiation factor 2 subunit family AD2_01619 PF02742 Iron dependent repressor, metal binding and dimerisation domain AD2_01619 PF01325 Iron dependent repressor, N-terminal DNA binding domain AD2_01621 PF04023 FeoA domain AD2_01621 PF07664 Ferrous iron transport protein B C terminus AD2_01621 PF07670 Nucleoside recognition AD2_01621 PF17910 FeoB cytosolic helical domain AD2_01621 PF02421 Ferrous iron transport protein B AD2_01623 PF16193 AAA C-terminal domain AD2_01623 PF12002 MgsA AAA+ ATPase C terminal AD2_01623 PF00004 ATPase family associated with various cellular activities (AAA) AD2_01625 PF14535 AMP-binding enzyme C-terminal domain AD2_01625 PF00501 AMP-binding enzyme AD2_01627 PF00037 4Fe-4S binding domain AD2_01627 PF12798 4Fe-4S binding domain AD2_01628 PF00474 Sodium:solute symporter family AD2_01629 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AD2_01629 PF00753 Metallo-beta-lactamase superfamily AD2_01629 PF10996 Beta-Casp domain AD2_01630 PF00155 Aminotransferase class I and II AD2_01631 PF05343 M42 glutamyl aminopeptidase AD2_01632 PF05343 M42 glutamyl aminopeptidase AD2_01633 PF05343 M42 glutamyl aminopeptidase AD2_01635 PF00877 NlpC/P60 family AD2_01638 PF01964 Radical SAM ThiC family AD2_01639 PF02581 Thiamine monophosphate synthase AD2_01640 PF00581 Rhodanese-like domain AD2_01640 PF00899 ThiF family AD2_01641 PF06968 Biotin and Thiamin Synthesis associated domain AD2_01641 PF04055 Radical SAM superfamily AD2_01642 PF05690 Thiazole biosynthesis protein ThiG AD2_01643 PF05690 Thiazole biosynthesis protein ThiG AD2_01643 PF02597 ThiS family AD2_01644 PF01926 50S ribosome-binding GTPase AD2_01649 PF13649 Methyltransferase domain AD2_01658 PF07508 Recombinase AD2_01658 PF00239 Resolvase, N terminal domain AD2_01658 PF13408 Recombinase zinc beta ribbon domain AD2_01660 PF00270 DEAD/DEAH box helicase AD2_01660 PF08494 DEAD/H associated AD2_01660 PF00271 Helicase conserved C-terminal domain AD2_01664 PF02796 Helix-turn-helix domain of resolvase AD2_01664 PF00239 Resolvase, N terminal domain AD2_01672 PF00072 Response regulator receiver domain AD2_01672 PF00158 Sigma-54 interaction domain AD2_01673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01673 PF08447 PAS fold AD2_01673 PF08448 PAS fold AD2_01674 PF05670 NFACT protein RNA binding domain AD2_01675 PF00155 Aminotransferase class I and II AD2_01676 PF00881 Nitroreductase family AD2_01677 PF00942 Cellulose binding domain AD2_01677 PF00759 Glycosyl hydrolase family 9 AD2_01677 PF03442 Carbohydrate binding domain X2 AD2_01679 PF00834 Ribulose-phosphate 3 epimerase family AD2_01680 PF03193 RsgA GTPase AD2_01680 PF16745 RsgA N-terminal domain AD2_01681 PF00069 Protein kinase domain AD2_01681 PF03793 PASTA domain AD2_01683 PF04055 Radical SAM superfamily AD2_01684 PF01189 16S rRNA methyltransferase RsmB/F AD2_01684 PF01029 NusB family AD2_01685 PF04298 Putative neutral zinc metallopeptidase AD2_01687 PF02911 Formyl transferase, C-terminal domain AD2_01687 PF00551 Formyl transferase AD2_01688 PF01327 Polypeptide deformylase AD2_01689 PF00271 Helicase conserved C-terminal domain AD2_01689 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AD2_01689 PF18074 Primosomal protein N C-terminal domain AD2_01689 PF04851 Type III restriction enzyme, res subunit AD2_01689 PF17764 3′ DNA-binding domain (3′BD) AD2_01691 PF00348 Polyprenyl synthetase AD2_01694 PF02424 ApbE family AD2_01695 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_01698 PF01522 Polysaccharide deacetylase AD2_01699 PF13537 Glutamine amidotransferase domain AD2_01699 PF00733 Asparagine synthase AD2_01700 PF05698 Bacterial trigger factor protein (TF) C-terminus AD2_01701 PF02769 AIR synthase related protein, C-terminal domain AD2_01701 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AD2_01701 PF00586 AIR synthase related protein, N-terminal domain AD2_01702 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AD2_01702 PF03466 LysR substrate binding domain AD2_01704 PF00501 AMP-binding enzyme AD2_01704 PF13193 AMP-binding enzyme C-terminal domain AD2_01705 PF00183 Hsp90 protein AD2_01706 PF00950 ABC 3 transport family AD2_01707 PF00005 ABC transporter AD2_01708 PF01297 Zinc-uptake complex component A periplasmic AD2_01709 PF01475 Ferric uptake regulator family AD2_01712 PF00759 Glycosyl hydrolase family 9 AD2_01712 PF00404 Dockerin type I domain AD2_01712 PF00942 Cellulose binding domain AD2_01714 PF00557 Metallopeptidase family M24 AD2_01714 PF01321 Creatinase/Prolidase N-terminal domain AD2_01715 PF00005 ABC transporter AD2_01715 PF12704 MacB-like periplasmic core domain AD2_01716 PF00005 ABC transporter AD2_01717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01717 PF00512 His Kinase A (phospho-acceptor) domain AD2_01717 PF00672 HAMP domain AD2_01718 PF00486 Transcriptional regulatory protein, C terminal AD2_01718 PF00072 Response regulator receiver domain AD2_01719 PF00404 Dockerin type I domain AD2_01719 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_01721 PF03412 Peptidase C39 family AD2_01721 PF00005 ABC transporter AD2_01721 PF00664 ABC transporter transmembrane region AD2_01728 PF01797 Transposase IS200 like AD2_01729 PF01797 Transposase IS200 like AD2_01730 PF16736 Single Cache-like AD2_01730 PF00989 PAS fold AD2_01730 PF00512 His Kinase A (phospho-acceptor) domain AD2_01730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01731 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AD2_01734 PF07733 Bacterial DNA polymerase III alpha NTPase domain AD2_01734 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AD2_01734 PF14579 Helix-hairpin-helix motif AD2_01734 PF02811 PHP domain AD2_01734 PF00929 Exonuclease AD2_01735 PF04055 Radical SAM superfamily AD2_01736 PF02901 Pyruvate formate lyase-like AD2_01736 PF01228 Glycine radical AD2_01737 PF09587 Bacterial capsule synthesis protein PGA_cap AD2_01744 PF04539 Sigma-70 region 3 AD2_01744 PF04545 Sigma-70, region 4 AD2_01744 PF04542 Sigma-70 region 2 AD2_01746 PF03975 CheD chemotactic sensory transduction AD2_01747 PF04509 CheC-like family AD2_01748 PF01584 CheW-like domain AD2_01749 PF01627 Hpt domain AD2_01749 PF07194 P2 response regulator binding domain AD2_01749 PF01584 CheW-like domain AD2_01749 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01749 PF02895 Signal transducing histidine kinase, homodimeric domain AD2_01750 PF00072 Response regulator receiver domain AD2_01750 PF01339 CheB methylesterase AD2_01752 PF10609 NUBPL iron-transfer P-loop NTPase AD2_01753 PF00448 SRP54-type protein, GTPase domain AD2_01754 PF00771 FHIPEP family AD2_01755 PF01312 FlhB HrpN YscU SpaS Family AD2_01756 PF01311 Bacterial export proteins, family 1 AD2_01757 PF01313 Bacterial export proteins, family 3 AD2_01758 PF00813 FliP family AD2_01760 PF00072 Response regulator receiver domain AD2_01761 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AD2_01761 PF04509 CheC-like family AD2_01762 PF04509 CheC-like family AD2_01762 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AD2_01763 PF02154 Flagellar motor switch protein FliM AD2_01763 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AD2_01765 PF06289 Flagellar and Swarming motility proteins AD2_01766 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AD2_01766 PF07559 Flagellar basal body protein FlaE AD2_01766 PF00460 Flagella basal body rod protein AD2_01768 PF03963 Flagellar hook capping protein - N-terminal region AD2_01772 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AD2_01772 PF02874 ATP synthase alpha/beta family, beta-barrel domain AD2_01772 PF18269 T3SS EscN ATPase C-terminal domain AD2_01773 PF02108 Flagellar assembly protein FliH AD2_01774 PF01706 FliG C-terminal domain AD2_01774 PF14841 FliG middle domain AD2_01774 PF14842 FliG N-terminal domain AD2_01776 PF02049 Flagellar hook-basal body complex protein FliE AD2_01777 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AD2_01777 PF00460 Flagella basal body rod protein AD2_01778 PF00460 Flagella basal body rod protein AD2_01779 PF01134 Glucose inhibited division protein A AD2_01780 PF01396 Topoisomerase DNA binding C4 zinc finger AD2_01780 PF01131 DNA topoisomerase AD2_01780 PF01751 Toprim domain AD2_01781 PF17782 DprA winged helix domain AD2_01781 PF02481 DNA recombination-mediator protein A AD2_01782 PF03372 Endonuclease/Exonuclease/phosphatase family AD2_01783 PF03733 Inner membrane component domain AD2_01785 PF13335 Magnesium chelatase, subunit ChlI C-terminal AD2_01785 PF01078 Magnesium chelatase, subunit ChlI AD2_01788 PF00942 Cellulose binding domain AD2_01788 PF00963 Cohesin domain AD2_01788 PF00404 Dockerin type I domain AD2_01790 PF03477 ATP cone domain AD2_01791 PF05239 PRC-barrel domain AD2_01792 PF04539 Sigma-70 region 3 AD2_01792 PF04545 Sigma-70, region 4 AD2_01792 PF04542 Sigma-70 region 2 AD2_01793 PF04542 Sigma-70 region 2 AD2_01793 PF04545 Sigma-70, region 4 AD2_01795 PF12327 FtsZ family, C-terminal domain AD2_01795 PF00091 Tubulin/FtsZ family, GTPase domain AD2_01796 PF02491 SHS2 domain inserted in FTSA AD2_01797 PF06947 Protein of unknown function (DUF1290) AD2_01798 PF03799 Cell division protein FtsQ AD2_01798 PF08478 POTRA domain, FtsQ-type AD2_01799 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AD2_01800 PF08353 Domain of unknown function (DUF1727) AD2_01800 PF08245 Mur ligase middle domain AD2_01801 PF07685 CobB/CobQ-like glutamine amidotransferase domain AD2_01802 PF00872 Transposase, Mutator family AD2_01803 PF00404 Dockerin type I domain AD2_01808 PF00759 Glycosyl hydrolase family 9 AD2_01808 PF00942 Cellulose binding domain AD2_01811 PF02256 Iron hydrogenase small subunit AD2_01811 PF00037 4Fe-4S binding domain AD2_01811 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AD2_01811 PF02906 Iron only hydrogenase large subunit, C-terminal domain AD2_01812 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AD2_01812 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AD2_01812 PF00037 4Fe-4S binding domain AD2_01818 PF00171 Aldehyde dehydrogenase family AD2_01818 PF00465 Iron-containing alcohol dehydrogenase AD2_01819 PF02629 CoA binding domain AD2_01819 PF06971 Putative DNA-binding protein N-terminus AD2_01820 PF02441 Flavoprotein AD2_01822 PF05193 Peptidase M16 inactive domain AD2_01822 PF00675 Insulinase (Peptidase family M16) AD2_01823 PF00013 KH domain AD2_01823 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AD2_01823 PF03725 3' exoribonuclease family, domain 2 AD2_01823 PF00575 S1 RNA binding domain AD2_01823 PF01138 3' exoribonuclease family, domain 1 AD2_01824 PF00312 Ribosomal protein S15 AD2_01826 PF12652 CotJB protein AD2_01827 PF05067 Manganese containing catalase AD2_01828 PF02018 Carbohydrate binding domain AD2_01828 PF02927 Cellulase N-terminal ig-like domain AD2_01828 PF00404 Dockerin type I domain AD2_01828 PF00759 Glycosyl hydrolase family 9 AD2_01828 PF02927 Cellulase N-terminal ig-like domain AD2_01828 PF00404 Dockerin type I domain AD2_01828 PF00759 Glycosyl hydrolase family 9 AD2_01828 PF02018 Carbohydrate binding domain AD2_01829 PF00759 Glycosyl hydrolase family 9 AD2_01829 PF02018 Carbohydrate binding domain AD2_01829 PF02927 Cellulase N-terminal ig-like domain AD2_01829 PF00404 Dockerin type I domain AD2_01832 PF05167 Uncharacterised ACR (DUF711) AD2_01834 PF03707 Bacterial signalling protein N terminal repeat AD2_01834 PF00990 Diguanylate cyclase, GGDEF domain AD2_01834 PF00563 EAL domain AD2_01837 PF00942 Cellulose binding domain AD2_01837 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_01837 PF00331 Glycosyl hydrolase family 10 AD2_01838 PF00942 Cellulose binding domain AD2_01838 PF12791 Anti-sigma factor N-terminus AD2_01839 PF04542 Sigma-70 region 2 AD2_01844 PF01906 Putative heavy-metal-binding AD2_01845 PF00005 ABC transporter AD2_01845 PF00664 ABC transporter transmembrane region AD2_01846 PF00005 ABC transporter AD2_01846 PF00664 ABC transporter transmembrane region AD2_01847 PF05025 RbsD / FucU transport protein family AD2_01848 PF00465 Iron-containing alcohol dehydrogenase AD2_01849 PF13407 Periplasmic binding protein domain AD2_01850 PF02653 Branched-chain amino acid transport system / permease component AD2_01851 PF00005 ABC transporter AD2_01852 PF01325 Iron dependent repressor, N-terminal DNA binding domain AD2_01852 PF00480 ROK family AD2_01853 PF00294 pfkB family carbohydrate kinase AD2_01854 PF00107 Zinc-binding dehydrogenase AD2_01854 PF08240 Alcohol dehydrogenase GroES-like domain AD2_01857 PF12704 MacB-like periplasmic core domain AD2_01857 PF02687 FtsX-like permease family AD2_01857 PF00005 ABC transporter AD2_01867 PF00117 Glutamine amidotransferase class-I AD2_01867 PF02540 NAD synthase AD2_01867 PF00958 GMP synthase C terminal domain AD2_01868 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AD2_01868 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AD2_01869 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AD2_01869 PF00175 Oxidoreductase NAD-binding domain AD2_01870 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_01870 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AD2_01870 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AD2_01871 PF00872 Transposase, Mutator family AD2_01873 PF01969 Protein of unknown function DUF111 AD2_01874 PF00731 AIR carboxylase AD2_01875 PF03807 NADP oxidoreductase coenzyme F420-dependent AD2_01875 PF14748 Pyrroline-5-carboxylate reductase dimerisation AD2_01877 PF03462 PCRF domain AD2_01877 PF00472 RF-1 domain AD2_01878 PF01381 Helix-turn-helix AD2_01879 PF00155 Aminotransferase class I and II AD2_01880 PF01037 Lrp/AsnC ligand binding domain AD2_01883 PF00085 Thioredoxin AD2_01885 PF00872 Transposase, Mutator family AD2_01889 PF11897 Protein of unknown function (DUF3417) AD2_01889 PF00343 Carbohydrate phosphorylase AD2_01890 PF00872 Transposase, Mutator family AD2_01892 PF01869 BadF/BadG/BcrA/BcrD ATPase family AD2_01896 PF10502 Signal peptidase, peptidase S26 AD2_01897 PF01116 Fructose-bisphosphate aldolase class-II AD2_01898 PF00365 Phosphofructokinase AD2_01900 PF00056 lactate/malate dehydrogenase, NAD binding domain AD2_01900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AD2_01901 PF03949 Malic enzyme, NAD binding domain AD2_01901 PF00390 Malic enzyme, N-terminal domain AD2_01902 PF01613 Flavin reductase like domain AD2_01903 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AD2_01903 PF00037 4Fe-4S binding domain AD2_01903 PF02906 Iron only hydrogenase large subunit, C-terminal domain AD2_01903 PF02256 Iron hydrogenase small subunit AD2_01904 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AD2_01904 PF00037 4Fe-4S binding domain AD2_01904 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AD2_01906 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01906 PF00512 His Kinase A (phospho-acceptor) domain AD2_01906 PF09308 LuxQ, periplasmic AD2_01906 PF00072 Response regulator receiver domain AD2_01910 PF04060 Putative Fe-S cluster AD2_01911 PF13581 Histidine kinase-like ATPase domain AD2_01913 PF03129 Anticodon binding domain AD2_01913 PF02824 TGS domain AD2_01913 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AD2_01913 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AD2_01915 PF08241 Methyltransferase domain AD2_01918 PF00009 Elongation factor Tu GTP binding domain AD2_01918 PF03144 Elongation factor Tu domain 2 AD2_01918 PF16658 Class II release factor RF3, C-terminal domain AD2_01919 PF00963 Cohesin domain AD2_01919 PF00395 S-layer homology domain AD2_01920 PF01797 Transposase IS200 like AD2_01923 PF00795 Carbon-nitrogen hydrolase AD2_01923 PF02540 NAD synthase AD2_01924 PF00133 tRNA synthetases class I (I, L, M and V) AD2_01924 PF08264 Anticodon-binding domain of tRNA AD2_01924 PF10458 Valyl tRNA synthetase tRNA binding arm AD2_01926 PF00933 Glycosyl hydrolase family 3 N terminal domain AD2_01926 PF01915 Glycosyl hydrolase family 3 C-terminal domain AD2_01929 PF00596 Class II Aldolase and Adducin N-terminal domain AD2_01930 PF17964 Bacterial Ig domain AD2_01930 PF03734 L,D-transpeptidase catalytic domain AD2_01932 PF07691 PA14 domain AD2_01932 PF12791 Anti-sigma factor N-terminus AD2_01933 PF04542 Sigma-70 region 2 AD2_01936 PF10431 C-terminal, D2-small domain, of ClpB protein AD2_01936 PF02861 Clp amino terminal domain, pathogenicity island component AD2_01936 PF17871 AAA lid domain AD2_01936 PF07724 AAA domain (Cdc48 subfamily) AD2_01936 PF00004 ATPase family associated with various cellular activities (AAA) AD2_01938 PF17755 UvrA DNA-binding domain AD2_01938 PF17760 UvrA interaction domain AD2_01939 PF06725 3D domain AD2_01939 PF07501 G5 domain AD2_01939 PF03990 G5-linked-Ubiquitin-like domain AD2_01940 PF17757 UvrB interaction domain AD2_01940 PF00271 Helicase conserved C-terminal domain AD2_01940 PF02151 UvrB/uvrC motif AD2_01940 PF04851 Type III restriction enzyme, res subunit AD2_01940 PF12344 Ultra-violet resistance protein B AD2_01943 PF03989 DNA gyrase C-terminal domain, beta-propeller AD2_01943 PF00521 DNA gyrase/topoisomerase IV, subunit A AD2_01944 PF00986 DNA gyrase B subunit, carboxyl terminus AD2_01944 PF01751 Toprim domain AD2_01944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01944 PF00204 DNA gyrase B AD2_01947 PF12821 Threonine/Serine exporter, ThrE AD2_01948 PF06738 Putative threonine/serine exporter AD2_01949 PF00188 Cysteine-rich secretory protein family AD2_01950 PF01554 MatE AD2_01951 PF00672 HAMP domain AD2_01951 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_01951 PF02203 Tar ligand binding domain homologue AD2_01953 PF00266 Aminotransferase class-V AD2_01962 PF03190 Protein of unknown function, DUF255 AD2_01963 PF03447 Homoserine dehydrogenase, NAD binding domain AD2_01963 PF00742 Homoserine dehydrogenase AD2_01963 PF01842 ACT domain AD2_01964 PF13307 Helicase C-terminal domain AD2_01964 PF04851 Type III restriction enzyme, res subunit AD2_01965 PF01739 CheR methyltransferase, SAM binding domain AD2_01965 PF03705 CheR methyltransferase, all-alpha domain AD2_01966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01966 PF00512 His Kinase A (phospho-acceptor) domain AD2_01966 PF09308 LuxQ, periplasmic AD2_01966 PF00072 Response regulator receiver domain AD2_01967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_01967 PF00512 His Kinase A (phospho-acceptor) domain AD2_01969 PF00180 Isocitrate/isopropylmalate dehydrogenase AD2_01971 PF00248 Aldo/keto reductase family AD2_01972 PF00534 Glycosyl transferases group 1 AD2_01972 PF08323 Starch synthase catalytic domain AD2_01975 PF01479 S4 domain AD2_01975 PF00849 RNA pseudouridylate synthase AD2_01976 PF10672 S-adenosylmethionine-dependent methyltransferase AD2_01976 PF02926 THUMP domain AD2_01976 PF01170 Putative RNA methylase family UPF0020 AD2_01978 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AD2_01978 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AD2_01979 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AD2_01979 PF06165 Glycosyltransferase family 36 AD2_01980 PF00759 Glycosyl hydrolase family 9 AD2_01980 PF00942 Cellulose binding domain AD2_01981 PF01966 HD domain AD2_01982 PF00768 D-alanyl-D-alanine carboxypeptidase AD2_01982 PF07943 Penicillin-binding protein 5, C-terminal domain AD2_01983 PF00759 Glycosyl hydrolase family 9 AD2_01983 PF00942 Cellulose binding domain AD2_01984 PF00704 Glycosyl hydrolases family 18 AD2_01984 PF00041 Fibronectin type III domain AD2_01985 PF01270 Glycosyl hydrolases family 8 AD2_01985 PF00404 Dockerin type I domain AD2_01987 PF00942 Cellulose binding domain AD2_01987 PF12791 Anti-sigma factor N-terminus AD2_01988 PF00672 HAMP domain AD2_01988 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_01988 PF17200 Single Cache domain 2 AD2_01989 PF00266 Aminotransferase class-V AD2_01992 PF00171 Aldehyde dehydrogenase family AD2_01994 PF12791 Anti-sigma factor N-terminus AD2_01996 PF00404 Dockerin type I domain AD2_01997 PF00437 Type II/IV secretion system protein AD2_01998 PF00356 Bacterial regulatory proteins, lacI family AD2_02001 PF07726 ATPase family associated with various cellular activities (AAA) AD2_02001 PF17863 AAA lid domain AD2_02004 PF01139 tRNA-splicing ligase RtcB AD2_02005 PF03415 Clostripain family AD2_02007 PF00488 MutS domain V AD2_02007 PF01624 MutS domain I AD2_02007 PF05188 MutS domain II AD2_02007 PF05192 MutS domain III AD2_02007 PF05190 MutS family domain IV AD2_02008 PF18370 Rhamnogalacturonan I lyases beta-sheet domain AD2_02009 PF01022 Bacterial regulatory protein, arsR family AD2_02010 PF00403 Heavy-metal-associated domain AD2_02011 PF01471 Putative peptidoglycan binding domain AD2_02011 PF07486 Cell Wall Hydrolase AD2_02015 PF00404 Dockerin type I domain AD2_02015 PF01270 Glycosyl hydrolases family 8 AD2_02016 PF00248 Aldo/keto reductase family AD2_02017 PF00462 Glutaredoxin AD2_02018 PF00501 AMP-binding enzyme AD2_02018 PF13193 AMP-binding enzyme C-terminal domain AD2_02019 PF13302 Acetyltransferase (GNAT) domain AD2_02021 PF04055 Radical SAM superfamily AD2_02021 PF06463 Molybdenum Cofactor Synthesis C AD2_02023 PF01370 NAD dependent epimerase/dehydratase family AD2_02031 PF00580 UvrD/REP helicase N-terminal domain AD2_02031 PF13361 UvrD-like helicase C-terminal domain AD2_02032 PF02463 RecF/RecN/SMC N terminal domain AD2_02033 PF03747 ADP-ribosylglycohydrolase AD2_02035 PF00872 Transposase, Mutator family AD2_02043 PF00149 Calcineurin-like phosphoesterase AD2_02044 PF00342 Phosphoglucose isomerase AD2_02046 PF01588 Putative tRNA binding domain AD2_02046 PF03484 tRNA synthetase B5 domain AD2_02046 PF03147 Ferredoxin-fold anticodon binding domain AD2_02046 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AD2_02046 PF03483 B3/4 domain AD2_02047 PF01409 tRNA synthetases class II core domain (F) AD2_02047 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AD2_02049 PF00232 Glycosyl hydrolase family 1 AD2_02051 PF00722 Glycosyl hydrolases family 16 AD2_02051 PF00404 Dockerin type I domain AD2_02052 PF00356 Bacterial regulatory proteins, lacI family AD2_02053 PF00535 Glycosyl transferase family 2 AD2_02057 PF00580 UvrD/REP helicase N-terminal domain AD2_02057 PF13361 UvrD-like helicase C-terminal domain AD2_02061 PF03951 Glutamine synthetase, beta-Grasp domain AD2_02061 PF00120 Glutamine synthetase, catalytic domain AD2_02063 PF04324 BFD-like [2Fe-2S] binding domain AD2_02063 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AD2_02063 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AD2_02063 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_02063 PF18267 Rubredoxin NAD+ reductase C-terminal domain AD2_02064 PF13247 4Fe-4S dicluster domain AD2_02064 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AD2_02064 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_02065 PF13187 4Fe-4S dicluster domain AD2_02065 PF01645 Conserved region in glutamate synthase AD2_02066 PF00310 Glutamine amidotransferases class-II AD2_02067 PF00120 Glutamine synthetase, catalytic domain AD2_02067 PF18318 Glutamine synthetase C-terminal domain AD2_02067 PF12437 Glutamine synthetase type III N terminal AD2_02071 PF00999 Sodium/hydrogen exchanger family AD2_02072 PF00404 Dockerin type I domain AD2_02072 PF00722 Glycosyl hydrolases family 16 AD2_02073 PF00404 Dockerin type I domain AD2_02073 PF01270 Glycosyl hydrolases family 8 AD2_02074 PF01725 Ham1 family AD2_02075 PF01138 3' exoribonuclease family, domain 1 AD2_02075 PF03725 3' exoribonuclease family, domain 2 AD2_02076 PF10646 Sporulation and spore germination AD2_02077 PF16363 GDP-mannose 4,6 dehydratase AD2_02078 PF01520 N-acetylmuramoyl-L-alanine amidase AD2_02080 PF02677 Epoxyqueuosine reductase QueH AD2_02081 PF17864 RuvB AAA lid domain AD2_02081 PF05491 RuvB C-terminal winged helix domain AD2_02081 PF05496 Holliday junction DNA helicase RuvB P-loop domain AD2_02082 PF07499 RuvA, C-terminal domain AD2_02082 PF01330 RuvA N terminal domain AD2_02083 PF02075 Crossover junction endodeoxyribonuclease RuvC AD2_02084 PF00764 Arginosuccinate synthase AD2_02085 PF00206 Lyase AD2_02085 PF14698 Argininosuccinate lyase C-terminal AD2_02089 PF00884 Sulfatase AD2_02090 PF01593 Flavin containing amine oxidoreductase AD2_02095 PF00072 Response regulator receiver domain AD2_02095 PF01339 CheB methylesterase AD2_02096 PF08331 Domain of unknown function (DUF1730) AD2_02098 PF01985 CRS1 / YhbY (CRM) domain AD2_02099 PF09269 Domain of unknown function (DUF1967) AD2_02099 PF01018 GTP1/OBG AD2_02099 PF01926 50S ribosome-binding GTPase AD2_02100 PF01016 Ribosomal L27 protein AD2_02102 PF00829 Ribosomal prokaryotic L21 protein AD2_02103 PF00575 S1 RNA binding domain AD2_02103 PF10150 Ribonuclease E/G family AD2_02106 PF11258 Protein of unknown function (DUF3048) N-terminal domain AD2_02106 PF17479 Protein of unknown function (DUF3048) C-terminal domain AD2_02107 PF06949 Protein of unknown function (DUF1292) AD2_02108 PF03652 Holliday junction resolvase AD2_02109 PF00248 Aldo/keto reductase family AD2_02110 PF06135 IreB regulatory phosphoprotein AD2_02111 PF04055 Radical SAM superfamily AD2_02111 PF01938 TRAM domain AD2_02111 PF00919 Uncharacterized protein family UPF0004 AD2_02114 PF00575 S1 RNA binding domain AD2_02114 PF00773 RNB domain AD2_02114 PF08206 Ribonuclease B OB domain AD2_02114 PF17876 Cold shock domain AD2_02115 PF01797 Transposase IS200 like AD2_02118 PF00113 Enolase, C-terminal TIM barrel domain AD2_02118 PF03952 Enolase, N-terminal domain AD2_02119 PF01966 HD domain AD2_02120 PF01676 Metalloenzyme superfamily AD2_02120 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AD2_02121 PF00121 Triosephosphate isomerase AD2_02122 PF00162 Phosphoglycerate kinase AD2_02123 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AD2_02123 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AD2_02125 PF00698 Acyl transferase domain AD2_02125 PF00668 Condensation domain AD2_02125 PF16197 Ketoacyl-synthetase C-terminal extension AD2_02125 PF00109 Beta-ketoacyl synthase, N-terminal domain AD2_02125 PF02801 Beta-ketoacyl synthase, C-terminal domain AD2_02125 PF00550 Phosphopantetheine attachment site AD2_02127 PF00501 AMP-binding enzyme AD2_02127 PF13193 AMP-binding enzyme C-terminal domain AD2_02128 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AD2_02128 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AD2_02129 PF00550 Phosphopantetheine attachment site AD2_02130 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AD2_02130 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AD2_02131 PF01966 HD domain AD2_02131 PF00072 Response regulator receiver domain AD2_02132 PF00588 SpoU rRNA Methylase family AD2_02134 PF14097 Stage V sporulation protein AE1 AD2_02135 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AD2_02137 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AD2_02139 PF04545 Sigma-70, region 4 AD2_02139 PF04539 Sigma-70 region 3 AD2_02139 PF04542 Sigma-70 region 2 AD2_02140 PF13581 Histidine kinase-like ATPase domain AD2_02141 PF01740 STAS domain AD2_02142 PF00381 PTS HPr component phosphorylation site AD2_02143 PF02650 WhiA C-terminal HTH domain AD2_02143 PF14527 WhiA LAGLIDADG-like domain AD2_02143 PF10298 WhiA N-terminal LAGLIDADG-like domain AD2_02145 PF01933 Uncharacterised protein family UPF0052 AD2_02146 PF03668 P-loop ATPase protein family AD2_02147 PF01565 FAD binding domain AD2_02147 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AD2_02148 PF02811 PHP domain AD2_02149 PF07475 HPr Serine kinase C-terminal domain AD2_02149 PF02603 HPr Serine kinase N terminus AD2_02152 PF00885 6,7-dimethyl-8-ribityllumazine synthase AD2_02153 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AD2_02153 PF00925 GTP cyclohydrolase II AD2_02154 PF00677 Lumazine binding domain AD2_02155 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AD2_02155 PF01872 RibD C-terminal domain AD2_02156 PF01894 Uncharacterised protein family UPF0047 AD2_02157 PF02390 Putative methyltransferase AD2_02158 PF00465 Iron-containing alcohol dehydrogenase AD2_02160 PF02219 Methylenetetrahydrofolate reductase AD2_02161 PF00571 CBS domain AD2_02161 PF02163 Peptidase family M50 AD2_02162 PF01551 Peptidase family M23 AD2_02163 PF03698 Uncharacterised protein family (UPF0180) AD2_02164 PF02142 MGS-like domain AD2_02165 PF03776 Septum formation topological specificity factor MinE AD2_02166 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AD2_02167 PF03775 Septum formation inhibitor MinC, C-terminal domain AD2_02168 PF03717 Penicillin-binding Protein dimerisation domain AD2_02168 PF00905 Penicillin binding protein transpeptidase domain AD2_02172 PF02545 Maf-like protein AD2_02174 PF05389 Negative regulator of genetic competence (MecA) AD2_02177 PF05362 Lon protease (S16) C-terminal proteolytic domain AD2_02177 PF02190 ATP-dependent protease La (LON) substrate-binding domain AD2_02177 PF00004 ATPase family associated with various cellular activities (AAA) AD2_02178 PF01960 ArgJ family AD2_02179 PF01584 CheW-like domain AD2_02188 PF00942 Cellulose binding domain AD2_02188 PF03442 Carbohydrate binding domain X2 AD2_02188 PF02011 Glycosyl hydrolase family 48 AD2_02189 PF00152 tRNA synthetases class II (D, K and N) AD2_02189 PF01336 OB-fold nucleic acid binding domain AD2_02190 PF03590 Aspartate-ammonia ligase AD2_02191 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AD2_02192 PF02146 Sir2 family AD2_02195 PF02690 Na+/Pi-cotransporter AD2_02197 PF00884 Sulfatase AD2_02198 PF02632 BioY family AD2_02199 PF02810 SEC-C motif AD2_02199 PF01043 SecA preprotein cross-linking domain AD2_02199 PF07516 SecA Wing and Scaffold domain AD2_02199 PF07517 SecA DEAD-like domain AD2_02200 PF00942 Cellulose binding domain AD2_02200 PF12791 Anti-sigma factor N-terminus AD2_02203 PF02368 Bacterial Ig-like domain (group 2) AD2_02205 PF02638 Glycosyl hydrolase-like 10 AD2_02206 PF03477 ATP cone domain AD2_02206 PF02867 Ribonucleotide reductase, barrel domain AD2_02206 PF00317 Ribonucleotide reductase, all-alpha domain AD2_02215 PF00756 Putative esterase AD2_02215 PF00404 Dockerin type I domain AD2_02215 PF00331 Glycosyl hydrolase family 10 AD2_02215 PF03422 Carbohydrate binding module (family 6) AD2_02216 PF00759 Glycosyl hydrolase family 9 AD2_02216 PF00942 Cellulose binding domain AD2_02217 PF01926 50S ribosome-binding GTPase AD2_02217 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AD2_02219 PF00759 Glycosyl hydrolase family 9 AD2_02219 PF00942 Cellulose binding domain AD2_02220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_02220 PF12729 Four helix bundle sensory module for signal transduction AD2_02220 PF00672 HAMP domain AD2_02221 PF01584 CheW-like domain AD2_02222 PF12729 Four helix bundle sensory module for signal transduction AD2_02222 PF00672 HAMP domain AD2_02222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_02223 PF01584 CheW-like domain AD2_02224 PF00011 Hsp20/alpha crystallin family AD2_02225 PF03063 Prismane/CO dehydrogenase family AD2_02226 PF02256 Iron hydrogenase small subunit AD2_02226 PF02906 Iron only hydrogenase large subunit, C-terminal domain AD2_02226 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AD2_02226 PF00037 4Fe-4S binding domain AD2_02228 PF00679 Elongation factor G C-terminus AD2_02228 PF14492 Elongation Factor G, domain II AD2_02228 PF00009 Elongation factor Tu GTP binding domain AD2_02228 PF03764 Elongation factor G, domain IV AD2_02229 PF02156 Glycosyl hydrolase family 26 AD2_02234 PF04715 Anthranilate synthase component I, N terminal region AD2_02234 PF00425 chorismate binding enzyme AD2_02235 PF04715 Anthranilate synthase component I, N terminal region AD2_02235 PF00425 chorismate binding enzyme AD2_02236 PF04715 Anthranilate synthase component I, N terminal region AD2_02236 PF00425 chorismate binding enzyme AD2_02237 PF00202 Aminotransferase class-III AD2_02238 PF13847 Methyltransferase domain AD2_02239 PF12697 Alpha/beta hydrolase family AD2_02240 PF00155 Aminotransferase class I and II AD2_02242 PF04055 Radical SAM superfamily AD2_02242 PF06968 Biotin and Thiamin Synthesis associated domain AD2_02245 PF07556 Protein of unknown function (DUF1538) AD2_02247 PF16369 C-terminal lipocalin-like domain AD2_02247 PF04616 Glycosyl hydrolases family 43 AD2_02257 PF00872 Transposase, Mutator family AD2_02261 PF00578 AhpC/TSA family AD2_02265 PF04542 Sigma-70 region 2 AD2_02265 PF08281 Sigma-70, region 4 AD2_02267 PF03425 Carbohydrate binding domain (family 11) AD2_02267 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_02267 PF00404 Dockerin type I domain AD2_02267 PF02156 Glycosyl hydrolase family 26 AD2_02268 PF03358 NADPH-dependent FMN reductase AD2_02271 PF02142 MGS-like domain AD2_02271 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AD2_02271 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AD2_02272 PF00692 dUTPase AD2_02273 PF00440 Bacterial regulatory proteins, tetR family AD2_02275 PF03176 MMPL family AD2_02280 PF00753 Metallo-beta-lactamase superfamily AD2_02280 PF01613 Flavin reductase like domain AD2_02281 PF00293 NUDIX domain AD2_02283 PF02743 Cache domain AD2_02283 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_02283 PF00672 HAMP domain AD2_02288 PF03551 Transcriptional regulator PadR-like family AD2_02288 PF10400 Virulence activator alpha C-term AD2_02289 PF00892 EamA-like transporter family AD2_02292 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_02292 PF00672 HAMP domain AD2_02292 PF12729 Four helix bundle sensory module for signal transduction AD2_02293 PF00909 Ammonium Transporter Family AD2_02294 PF00664 ABC transporter transmembrane region AD2_02294 PF00005 ABC transporter AD2_02295 PF00664 ABC transporter transmembrane region AD2_02295 PF00005 ABC transporter AD2_02299 PF00395 S-layer homology domain AD2_02299 PF00963 Cohesin domain AD2_02303 PF03960 ArsC family AD2_02306 PF01555 DNA methylase AD2_02307 PF04556 DpnII restriction endonuclease AD2_02308 PF02086 D12 class N6 adenine-specific DNA methyltransferase AD2_02312 PF03193 RsgA GTPase AD2_02316 PF10672 S-adenosylmethionine-dependent methyltransferase AD2_02316 PF17785 PUA-like domain AD2_02324 PF02687 FtsX-like permease family AD2_02325 PF00005 ABC transporter AD2_02326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02327 PF00072 Response regulator receiver domain AD2_02327 PF00486 Transcriptional regulatory protein, C terminal AD2_02334 PF00005 ABC transporter AD2_02334 PF13732 Domain of unknown function (DUF4162) AD2_02336 PF01381 Helix-turn-helix AD2_02337 PF18318 Glutamine synthetase C-terminal domain AD2_02337 PF00120 Glutamine synthetase, catalytic domain AD2_02337 PF12437 Glutamine synthetase type III N terminal AD2_02338 PF02637 GatB domain AD2_02338 PF02934 GatB/GatE catalytic domain AD2_02339 PF01425 Amidase AD2_02340 PF02686 Glu-tRNAGln amidotransferase C subunit AD2_02341 PF00152 tRNA synthetases class II (D, K and N) AD2_02341 PF01336 OB-fold nucleic acid binding domain AD2_02341 PF02938 GAD domain AD2_02345 PF00378 Enoyl-CoA hydratase/isomerase AD2_02346 PF13649 Methyltransferase domain AD2_02347 PF00190 Cupin AD2_02350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AD2_02350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AD2_02351 PF03180 NLPA lipoprotein AD2_02352 PF00528 Binding-protein-dependent transport system inner membrane component AD2_02353 PF00005 ABC transporter AD2_02353 PF09383 NIL domain AD2_02354 PF02082 Transcriptional regulator AD2_02355 PF01053 Cys/Met metabolism PLP-dependent enzyme AD2_02356 PF00291 Pyridoxal-phosphate dependent enzyme AD2_02359 PF00005 ABC transporter AD2_02361 PF00148 Nitrogenase component 1 type Oxidoreductase AD2_02362 PF00148 Nitrogenase component 1 type Oxidoreductase AD2_02363 PF02579 Dinitrogenase iron-molybdenum cofactor AD2_02363 PF04055 Radical SAM superfamily AD2_02364 PF02579 Dinitrogenase iron-molybdenum cofactor AD2_02364 PF04055 Radical SAM superfamily AD2_02365 PF01053 Cys/Met metabolism PLP-dependent enzyme AD2_02367 PF00528 Binding-protein-dependent transport system inner membrane component AD2_02368 PF00005 ABC transporter AD2_02369 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AD2_02371 PF01048 Phosphorylase superfamily AD2_02372 PF02608 ABC transporter substrate-binding protein PnrA-like AD2_02373 PF11230 Protein of unknown function (DUF3029) AD2_02374 PF04055 Radical SAM superfamily AD2_02375 PF00005 ABC transporter AD2_02376 PF02653 Branched-chain amino acid transport system / permease component AD2_02377 PF02653 Branched-chain amino acid transport system / permease component AD2_02378 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AD2_02379 PF01791 DeoC/LacD family aldolase AD2_02380 PF12833 Helix-turn-helix domain AD2_02380 PF00072 Response regulator receiver domain AD2_02381 PF06580 Histidine kinase AD2_02382 PF00528 Binding-protein-dependent transport system inner membrane component AD2_02383 PF00005 ABC transporter AD2_02383 PF08402 TOBE domain AD2_02389 PF02595 Glycerate kinase family AD2_02394 PF00176 SNF2 family N-terminal domain AD2_02394 PF00271 Helicase conserved C-terminal domain AD2_02403 PF00293 NUDIX domain AD2_02404 PF13936 Helix-turn-helix domain AD2_02405 PF07508 Recombinase AD2_02405 PF13408 Recombinase zinc beta ribbon domain AD2_02407 PF02796 Helix-turn-helix domain of resolvase AD2_02407 PF00239 Resolvase, N terminal domain AD2_02409 PF01510 N-acetylmuramoyl-L-alanine amidase AD2_02409 PF01476 LysM domain AD2_02409 PF01471 Putative peptidoglycan binding domain AD2_02410 PF05105 Bacteriophage holin family AD2_02425 PF00574 Clp protease AD2_02426 PF04860 Phage portal protein AD2_02427 PF03354 Phage Terminase AD2_02434 PF01555 DNA methylase AD2_02435 PF01555 DNA methylase AD2_02441 PF00005 ABC transporter AD2_02443 PF13493 Domain of unknown function (DUF4118) AD2_02443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02443 PF00512 His Kinase A (phospho-acceptor) domain AD2_02443 PF02702 Osmosensitive K+ channel His kinase sensor domain AD2_02444 PF00486 Transcriptional regulatory protein, C terminal AD2_02444 PF00072 Response regulator receiver domain AD2_02445 PF00753 Metallo-beta-lactamase superfamily AD2_02445 PF16123 Hydroxyacylglutathione hydrolase C-terminus AD2_02453 PF01938 TRAM domain AD2_02453 PF05958 tRNA (Uracil-5-)-methyltransferase AD2_02454 PF00005 ABC transporter AD2_02455 PF01032 FecCD transport family AD2_02456 PF01497 Periplasmic binding protein AD2_02458 PF01476 LysM domain AD2_02458 PF08525 Opacity-associated protein A N-terminal motif AD2_02458 PF01551 Peptidase family M23 AD2_02461 PF00912 Transglycosylase AD2_02461 PF00905 Penicillin binding protein transpeptidase domain AD2_02462 PF02687 FtsX-like permease family AD2_02462 PF12704 MacB-like periplasmic core domain AD2_02464 PF00005 ABC transporter AD2_02467 PF00696 Amino acid kinase family AD2_02472 PF02915 Rubrerythrin AD2_02473 PF02698 DUF218 domain AD2_02474 PF13654 AAA domain AD2_02474 PF05362 Lon protease (S16) C-terminal proteolytic domain AD2_02475 PF00583 Acetyltransferase (GNAT) family AD2_02476 PF00814 Glycoprotease family AD2_02477 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AD2_02478 PF01979 Amidohydrolase family AD2_02483 PF00380 Ribosomal protein S9/S16 AD2_02484 PF00572 Ribosomal protein L13 AD2_02486 PF10635 DisA bacterial checkpoint controller linker region AD2_02486 PF02457 DisA bacterial checkpoint controller nucleotide-binding AD2_02487 PF18073 Rubredoxin metal binding domain AD2_02490 PF07724 AAA domain (Cdc48 subfamily) AD2_02490 PF10431 C-terminal, D2-small domain, of ClpB protein AD2_02490 PF02861 Clp amino terminal domain, pathogenicity island component AD2_02490 PF17871 AAA lid domain AD2_02490 PF00004 ATPase family associated with various cellular activities (AAA) AD2_02491 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AD2_02492 PF02151 UvrB/uvrC motif AD2_02493 PF17727 CtsR C-terminal dimerization domain AD2_02493 PF05848 CtsR N-terminal HTH domain AD2_02495 PF00679 Elongation factor G C-terminus AD2_02495 PF14492 Elongation Factor G, domain II AD2_02495 PF03764 Elongation factor G, domain IV AD2_02495 PF00009 Elongation factor Tu GTP binding domain AD2_02495 PF03144 Elongation factor Tu domain 2 AD2_02496 PF00793 DAHP synthetase I family AD2_02496 PF18152 DAHP synthase ferredoxin-like domain AD2_02497 PF01842 ACT domain AD2_02497 PF02153 Prephenate dehydrogenase AD2_02498 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AD2_02499 PF06971 Putative DNA-binding protein N-terminus AD2_02499 PF02629 CoA binding domain AD2_02500 PF16326 ABC transporter C-terminal domain AD2_02500 PF12848 ABC transporter AD2_02500 PF00005 ABC transporter AD2_02501 PF01476 LysM domain AD2_02501 PF00704 Glycosyl hydrolases family 18 AD2_02502 PF00005 ABC transporter AD2_02503 PF02361 Cobalt transport protein AD2_02504 PF01891 Cobalt uptake substrate-specific transmembrane region AD2_02504 PF13190 PDGLE domain AD2_02505 PF01520 N-acetylmuramoyl-L-alanine amidase AD2_02506 PF00072 Response regulator receiver domain AD2_02506 PF00486 Transcriptional regulatory protein, C terminal AD2_02507 PF00404 Dockerin type I domain AD2_02507 PF00963 Cohesin domain AD2_02507 PF00942 Cellulose binding domain AD2_02510 PF04542 Sigma-70 region 2 AD2_02510 PF08281 Sigma-70, region 4 AD2_02511 PF05569 BlaR1 peptidase M56 AD2_02511 PF00905 Penicillin binding protein transpeptidase domain AD2_02512 PF03965 Penicillinase repressor AD2_02513 PF01774 UreD urease accessory protein AD2_02514 PF02492 CobW/HypB/UreG, nucleotide-binding domain AD2_02515 PF01730 UreF AD2_02516 PF05194 UreE urease accessory protein, C-terminal domain AD2_02516 PF02814 UreE urease accessory protein, N-terminal domain AD2_02517 PF02814 UreE urease accessory protein, N-terminal domain AD2_02517 PF05194 UreE urease accessory protein, C-terminal domain AD2_02518 PF01979 Amidohydrolase family AD2_02518 PF00449 Urease alpha-subunit, N-terminal domain AD2_02519 PF00699 Urease beta subunit AD2_02520 PF00547 Urease, gamma subunit AD2_02521 PF00005 ABC transporter AD2_02522 PF12399 Branched-chain amino acid ATP-binding cassette transporter AD2_02522 PF00005 ABC transporter AD2_02524 PF02653 Branched-chain amino acid transport system / permease component AD2_02526 PF12833 Helix-turn-helix domain AD2_02526 PF00072 Response regulator receiver domain AD2_02527 PF00672 HAMP domain AD2_02527 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02527 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AD2_02527 PF00072 Response regulator receiver domain AD2_02527 PF01627 Hpt domain AD2_02527 PF00512 His Kinase A (phospho-acceptor) domain AD2_02528 PF00360 Phytochrome region AD2_02528 PF01590 GAF domain AD2_02528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02528 PF00512 His Kinase A (phospho-acceptor) domain AD2_02528 PF08446 PAS fold AD2_02543 PF00404 Dockerin type I domain AD2_02543 PF02018 Carbohydrate binding domain AD2_02543 PF00331 Glycosyl hydrolase family 10 AD2_02543 PF00331 Glycosyl hydrolase family 10 AD2_02543 PF00756 Putative esterase AD2_02543 PF00404 Dockerin type I domain AD2_02543 PF00756 Putative esterase AD2_02543 PF02018 Carbohydrate binding domain AD2_02544 PF06968 Biotin and Thiamin Synthesis associated domain AD2_02544 PF04055 Radical SAM superfamily AD2_02545 PF00291 Pyridoxal-phosphate dependent enzyme AD2_02546 PF02540 NAD synthase AD2_02547 PF01053 Cys/Met metabolism PLP-dependent enzyme AD2_02548 PF02082 Transcriptional regulator AD2_02549 PF02082 Transcriptional regulator AD2_02550 PF04204 Homoserine O-succinyltransferase AD2_02551 PF00989 PAS fold AD2_02551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02551 PF00672 HAMP domain AD2_02551 PF18698 Histidine kinase sensor domain AD2_02551 PF00512 His Kinase A (phospho-acceptor) domain AD2_02552 PF00486 Transcriptional regulatory protein, C terminal AD2_02552 PF00072 Response regulator receiver domain AD2_02553 PF00403 Heavy-metal-associated domain AD2_02557 PF01430 Hsp33 protein AD2_02558 PF00313 'Cold-shock' DNA-binding domain AD2_02559 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AD2_02562 PF17820 PDZ domain AD2_02562 PF03572 Peptidase family S41 AD2_02562 PF01471 Putative peptidoglycan binding domain AD2_02563 PF01476 LysM domain AD2_02563 PF01551 Peptidase family M23 AD2_02564 PF18075 FtsX extracellular domain AD2_02564 PF02687 FtsX-like permease family AD2_02565 PF00005 ABC transporter AD2_02566 PF13556 PucR C-terminal helix-turn-helix domain AD2_02566 PF17853 GGDEF-like domain AD2_02566 PF05651 Putative sugar diacid recognition AD2_02567 PF03459 TOBE domain AD2_02567 PF17912 MalK OB fold domain AD2_02567 PF00005 ABC transporter AD2_02568 PF02774 Semialdehyde dehydrogenase, dimerisation domain AD2_02568 PF01118 Semialdehyde dehydrogenase, NAD binding domain AD2_02569 PF00696 Amino acid kinase family AD2_02571 PF00202 Aminotransferase class-III AD2_02572 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AD2_02572 PF00117 Glutamine amidotransferase class-I AD2_02573 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AD2_02573 PF02142 MGS-like domain AD2_02573 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AD2_02574 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AD2_02574 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AD2_02577 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_02577 PF00404 Dockerin type I domain AD2_02581 PF03551 Transcriptional regulator PadR-like family AD2_02582 PF00149 Calcineurin-like phosphoesterase AD2_02584 PF02557 D-alanyl-D-alanine carboxypeptidase AD2_02585 PF13936 Helix-turn-helix domain AD2_02586 PF00872 Transposase, Mutator family AD2_02588 PF01522 Polysaccharide deacetylase AD2_02588 PF13739 Deacetylase PdaC AD2_02588 PF11738 Protein of unknown function (DUF3298) AD2_02589 PF00501 AMP-binding enzyme AD2_02589 PF13193 AMP-binding enzyme C-terminal domain AD2_02589 PF00668 Condensation domain AD2_02589 PF00550 Phosphopantetheine attachment site AD2_02592 PF08659 KR domain AD2_02592 PF00550 Phosphopantetheine attachment site AD2_02592 PF00109 Beta-ketoacyl synthase, N-terminal domain AD2_02592 PF16197 Ketoacyl-synthetase C-terminal extension AD2_02592 PF14765 Polyketide synthase dehydratase AD2_02592 PF02801 Beta-ketoacyl synthase, C-terminal domain AD2_02592 PF13193 AMP-binding enzyme C-terminal domain AD2_02592 PF00501 AMP-binding enzyme AD2_02592 PF00668 Condensation domain AD2_02597 PF01797 Transposase IS200 like AD2_02601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02601 PF00512 His Kinase A (phospho-acceptor) domain AD2_02601 PF00989 PAS fold AD2_02601 PF16736 Single Cache-like AD2_02602 PF00072 Response regulator receiver domain AD2_02602 PF00486 Transcriptional regulatory protein, C terminal AD2_02603 PF00689 Cation transporting ATPase, C-terminus AD2_02603 PF00690 Cation transporter/ATPase, N-terminus AD2_02604 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AD2_02604 PF01276 Orn/Lys/Arg decarboxylase, major domain AD2_02605 PF02308 MgtC family AD2_02606 PF09551 Stage II sporulation protein R (spore_II_R) AD2_02607 PF03551 Transcriptional regulator PadR-like family AD2_02609 PF06418 CTP synthase N-terminus AD2_02609 PF00117 Glutamine amidotransferase class-I AD2_02614 PF03572 Peptidase family S41 AD2_02614 PF17820 PDZ domain AD2_02614 PF01471 Putative peptidoglycan binding domain AD2_02615 PF00395 S-layer homology domain AD2_02615 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_02615 PF03424 Carbohydrate binding domain (family 17/28) AD2_02619 PF03485 Arginyl tRNA synthetase N terminal domain AD2_02619 PF05746 DALR anticodon binding domain AD2_02619 PF00750 tRNA synthetases class I (R) AD2_02621 PF01177 Asp/Glu/Hydantoin racemase AD2_02622 PF01820 D-ala D-ala ligase N-terminus AD2_02622 PF07478 D-ala D-ala ligase C-terminus AD2_02623 PF00571 CBS domain AD2_02623 PF01769 Divalent cation transporter AD2_02623 PF03448 MgtE intracellular N domain AD2_02628 PF01791 DeoC/LacD family aldolase AD2_02629 PF04308 Ribonuclease H-like AD2_02630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_02631 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_02632 PF00578 AhpC/TSA family AD2_02633 PF02683 Cytochrome C biogenesis protein transmembrane region AD2_02638 PF01471 Putative peptidoglycan binding domain AD2_02638 PF07486 Cell Wall Hydrolase AD2_02640 PF09371 Tex-like protein N-terminal domain AD2_02640 PF16921 Tex protein YqgF-like domain AD2_02640 PF17674 HHH domain AD2_02640 PF00575 S1 RNA binding domain AD2_02641 PF00294 pfkB family carbohydrate kinase AD2_02644 PF03851 UV-endonuclease UvdE AD2_02645 PF13649 Methyltransferase domain AD2_02647 PF00483 Nucleotidyl transferase AD2_02648 PF00849 RNA pseudouridylate synthase AD2_02649 PF00756 Putative esterase AD2_02649 PF00404 Dockerin type I domain AD2_02649 PF03422 Carbohydrate binding module (family 6) AD2_02649 PF00331 Glycosyl hydrolase family 10 AD2_02650 PF07992 Pyridine nucleotide-disulphide oxidoreductase AD2_02650 PF13192 Thioredoxin domain AD2_02651 PF10417 C-terminal domain of 1-Cys peroxiredoxin AD2_02651 PF00578 AhpC/TSA family AD2_02654 PF11638 DnaA N-terminal domain AD2_02654 PF00308 Bacterial dnaA protein AD2_02654 PF08299 Bacterial dnaA protein helix-turn-helix AD2_02655 PF01580 FtsK/SpoIIIE family AD2_02655 PF12538 DNA transporter AD2_02686 PF00872 Transposase, Mutator family AD2_02692 PF02463 RecF/RecN/SMC N terminal domain AD2_02693 PF02796 Helix-turn-helix domain of resolvase AD2_02693 PF00665 Integrase core domain AD2_02703 PF00872 Transposase, Mutator family AD2_02716 PF01797 Transposase IS200 like AD2_02719 PF00069 Protein kinase domain AD2_02725 PF00580 UvrD/REP helicase N-terminal domain AD2_02725 PF12705 PD-(D/E)XK nuclease superfamily AD2_02725 PF13361 UvrD-like helicase C-terminal domain AD2_02726 PF12705 PD-(D/E)XK nuclease superfamily AD2_02743 PF03787 RAMP superfamily AD2_02750 PF01661 Macro domain AD2_02751 PF04542 Sigma-70 region 2 AD2_02751 PF08281 Sigma-70, region 4 AD2_02753 PF08032 RNA 2'-O ribose methyltransferase substrate binding AD2_02753 PF00588 SpoU rRNA Methylase family AD2_02754 PF00636 Ribonuclease III domain AD2_02755 PF03323 Bacillus/Clostridium GerA spore germination protein AD2_02757 PF05504 Spore germination B3/ GerAC like, C-terminal AD2_02758 PF09190 DALR domain AD2_02758 PF01406 tRNA synthetases class I (C) catalytic domain AD2_02759 PF06426 Serine acetyltransferase, N-terminal AD2_02759 PF00132 Bacterial transferase hexapeptide (six repeats) AD2_02766 PF07687 Peptidase dimerisation domain AD2_02766 PF01546 Peptidase family M20/M25/M40 AD2_02767 PF04070 Domain of unknown function (DUF378) AD2_02769 PF01709 Transcriptional regulator AD2_02771 PF00672 HAMP domain AD2_02771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02771 PF00989 PAS fold AD2_02771 PF00512 His Kinase A (phospho-acceptor) domain AD2_02771 PF18698 Histidine kinase sensor domain AD2_02773 PF01205 Uncharacterized protein family UPF0029 AD2_02773 PF09186 Domain of unknown function (DUF1949) AD2_02774 PF10502 Signal peptidase, peptidase S26 AD2_02775 PF00293 NUDIX domain AD2_02776 PF16360 GTP-binding GTPase Middle Region AD2_02776 PF13167 GTP-binding GTPase N-terminal AD2_02776 PF01926 50S ribosome-binding GTPase AD2_02778 PF00817 impB/mucB/samB family AD2_02778 PF11799 impB/mucB/samB family C-terminal domain AD2_02779 PF00692 dUTPase AD2_02780 PF01136 Peptidase family U32 AD2_02780 PF16325 Peptidase family U32 C-terminal domain AD2_02781 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AD2_02781 PF01676 Metalloenzyme superfamily AD2_02783 PF00404 Dockerin type I domain AD2_02783 PF02011 Glycosyl hydrolase family 48 AD2_02786 PF00398 Ribosomal RNA adenine dimethylase AD2_02787 PF03990 G5-linked-Ubiquitin-like domain AD2_02787 PF07501 G5 domain AD2_02787 PF06725 3D domain AD2_02789 PF01026 TatD related DNase AD2_02790 PF01588 Putative tRNA binding domain AD2_02790 PF08264 Anticodon-binding domain of tRNA AD2_02790 PF09334 tRNA synthetases class I (M) AD2_02791 PF10776 Protein of unknown function (DUF2600) AD2_02792 PF07670 Nucleoside recognition AD2_02793 PF07670 Nucleoside recognition AD2_02794 PF18277 AbrB C-terminal domain AD2_02794 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AD2_02795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AD2_02796 PF05175 Methyltransferase small domain AD2_02797 PF00037 4Fe-4S binding domain AD2_02798 PF04468 PSP1 C-terminal conserved region AD2_02799 PF12169 DNA polymerase III subunits gamma and tau domain III AD2_02800 PF03885 Protein of unknown function (DUF327) AD2_02802 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AD2_02802 PF01276 Orn/Lys/Arg decarboxylase, major domain AD2_02805 PF00005 ABC transporter AD2_02807 PF00072 Response regulator receiver domain AD2_02807 PF00486 Transcriptional regulatory protein, C terminal AD2_02808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02809 PF01910 Thiamine-binding protein AD2_02810 PF00528 Binding-protein-dependent transport system inner membrane component AD2_02811 PF09084 NMT1/THI5 like AD2_02812 PF00005 ABC transporter AD2_02813 PF12791 Anti-sigma factor N-terminus AD2_02813 PF00331 Glycosyl hydrolase family 10 AD2_02814 PF04542 Sigma-70 region 2 AD2_02819 PF00528 Binding-protein-dependent transport system inner membrane component AD2_02820 PF00528 Binding-protein-dependent transport system inner membrane component AD2_02821 PF17863 AAA lid domain AD2_02821 PF07726 ATPase family associated with various cellular activities (AAA) AD2_02828 PF00331 Glycosyl hydrolase family 10 AD2_02828 PF00756 Putative esterase AD2_02828 PF00404 Dockerin type I domain AD2_02828 PF02018 Carbohydrate binding domain AD2_02829 PF04616 Glycosyl hydrolases family 43 AD2_02829 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain AD2_02830 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain AD2_02830 PF04616 Glycosyl hydrolases family 43 AD2_02833 PF13286 Phosphohydrolase-associated domain AD2_02833 PF01966 HD domain AD2_02834 PF02132 RecR protein AD2_02834 PF13662 Toprim domain AD2_02835 PF02575 YbaB/EbfC DNA-binding family AD2_02836 PF12169 DNA polymerase III subunits gamma and tau domain III AD2_02839 PF00331 Glycosyl hydrolase family 10 AD2_02839 PF00942 Cellulose binding domain AD2_02839 PF00150 Cellulase (glycosyl hydrolase family 5) AD2_02846 PF00395 S-layer homology domain AD2_02846 PF00963 Cohesin domain AD2_02849 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 AD2_02854 PF07722 Peptidase C26 AD2_02855 PF01740 STAS domain AD2_02857 PF00301 Rubredoxin AD2_02858 PF06866 Protein of unknown function (DUF1256) AD2_02862 PF00149 Calcineurin-like phosphoesterase AD2_02865 PF01197 Ribosomal protein L31 AD2_02866 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AD2_02866 PF07498 Rho termination factor, N-terminal domain AD2_02866 PF07497 Rho termination factor, RNA-binding domain AD2_02869 PF02517 CPBP intramembrane metalloprotease AD2_02877 PF00544 Pectate lyase AD2_02878 PF00654 Voltage gated chloride channel AD2_02879 PF01171 PP-loop family AD2_02881 PF00483 Nucleotidyl transferase AD2_02882 PF03631 Virulence factor BrkB AD2_02883 PF01084 Ribosomal protein S18 AD2_02884 PF00436 Single-strand binding protein family AD2_02885 PF01250 Ribosomal protein S6 AD2_02886 PF00072 Response regulator receiver domain AD2_02886 PF00990 Diguanylate cyclase, GGDEF domain AD2_02887 PF01979 Amidohydrolase family AD2_02888 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AD2_02888 PF00128 Alpha amylase, catalytic domain AD2_02888 PF02806 Alpha amylase, C-terminal all-beta domain AD2_02890 PF00331 Glycosyl hydrolase family 10 AD2_02890 PF00756 Putative esterase AD2_02890 PF00404 Dockerin type I domain AD2_02890 PF03422 Carbohydrate binding module (family 6) AD2_02891 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AD2_02891 PF04616 Glycosyl hydrolases family 43 AD2_02892 PF00331 Glycosyl hydrolase family 10 AD2_02892 PF00756 Putative esterase AD2_02892 PF00404 Dockerin type I domain AD2_02892 PF03422 Carbohydrate binding module (family 6) AD2_02893 PF00331 Glycosyl hydrolase family 10 AD2_02893 PF00756 Putative esterase AD2_02893 PF00404 Dockerin type I domain AD2_02893 PF03422 Carbohydrate binding module (family 6) AD2_02894 PF03422 Carbohydrate binding module (family 6) AD2_02894 PF04616 Glycosyl hydrolases family 43 AD2_02895 PF00703 Glycosyl hydrolases family 2 AD2_02895 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AD2_02895 PF02837 Glycosyl hydrolases family 2, sugar binding domain AD2_02895 PF16355 Domain of unknown function (DUF4982) AD2_02895 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AD2_02898 PF06445 GyrI-like small molecule binding domain AD2_02898 PF13411 MerR HTH family regulatory protein AD2_02899 PF02687 FtsX-like permease family AD2_02900 PF00005 ABC transporter AD2_02901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02902 PF00072 Response regulator receiver domain AD2_02902 PF00486 Transcriptional regulatory protein, C terminal AD2_02910 PF01227 GTP cyclohydrolase I AD2_02911 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AD2_02911 PF08245 Mur ligase middle domain AD2_02911 PF02875 Mur ligase family, glutamate ligase domain AD2_02912 PF03575 Peptidase family S51 AD2_02914 PF01979 Amidohydrolase family AD2_02915 PF01726 LexA DNA binding domain AD2_02915 PF00717 Peptidase S24-like AD2_02916 PF00180 Isocitrate/isopropylmalate dehydrogenase AD2_02917 PF00694 Aconitase C-terminal domain AD2_02918 PF00330 Aconitase family (aconitate hydratase) AD2_02919 PF02311 AraC-like ligand binding domain AD2_02919 PF12833 Helix-turn-helix domain AD2_02920 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AD2_02924 PF02561 Flagellar protein FliS AD2_02925 PF07196 Flagellin hook IN motif AD2_02925 PF07195 Flagellar hook-associated protein 2 C-terminus AD2_02925 PF02465 Flagellar hook-associated protein 2 N-terminus AD2_02927 PF16363 GDP-mannose 4,6 dehydratase AD2_02928 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AD2_02931 PF02911 Formyl transferase, C-terminal domain AD2_02931 PF00551 Formyl transferase AD2_02934 PF00550 Phosphopantetheine attachment site AD2_02936 PF08666 SAF domain AD2_02936 PF03102 NeuB family AD2_02937 PF02348 Cytidylyltransferase AD2_02938 PF08241 Methyltransferase domain AD2_02939 PF08485 Polysaccharide biosynthesis protein C-terminal AD2_02939 PF02719 Polysaccharide biosynthesis protein AD2_02943 PF00700 Bacterial flagellin C-terminal helical region AD2_02943 PF00669 Bacterial flagellin N-terminal helical region AD2_02944 PF00700 Bacterial flagellin C-terminal helical region AD2_02944 PF00669 Bacterial flagellin N-terminal helical region AD2_02945 PF00171 Aldehyde dehydrogenase family AD2_02946 PF02599 Global regulator protein family AD2_02947 PF02623 FliW protein AD2_02949 PF00700 Bacterial flagellin C-terminal helical region AD2_02949 PF00669 Bacterial flagellin N-terminal helical region AD2_02950 PF00460 Flagella basal body rod protein AD2_02950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AD2_02955 PF00156 Phosphoribosyl transferase domain AD2_02956 PF13538 UvrD-like helicase C-terminal domain AD2_02956 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AD2_02956 PF14490 Helix-hairpin-helix containing domain AD2_02958 PF00438 S-adenosylmethionine synthetase, N-terminal domain AD2_02958 PF02773 S-adenosylmethionine synthetase, C-terminal domain AD2_02958 PF02772 S-adenosylmethionine synthetase, central domain AD2_02960 PF00004 ATPase family associated with various cellular activities (AAA) AD2_02960 PF17862 AAA+ lid domain AD2_02960 PF06480 FtsH Extracellular AD2_02960 PF01434 Peptidase family M41 AD2_02961 PF00156 Phosphoribosyl transferase domain AD2_02962 PF01171 PP-loop family AD2_02962 PF11734 TilS substrate C-terminal domain AD2_02963 PF03796 DnaB-like helicase C terminal domain AD2_02963 PF00772 DnaB-like helicase N terminal domain AD2_02964 PF01281 Ribosomal protein L9, N-terminal domain AD2_02964 PF03948 Ribosomal protein L9, C-terminal domain AD2_02965 PF02272 DHHA1 domain AD2_02965 PF01368 DHH family AD2_02967 PF01842 ACT domain AD2_02967 PF00800 Prephenate dehydratase AD2_02967 PF01817 Chorismate mutase type II AD2_02969 PF01496 V-type ATPase 116kDa subunit family AD2_02970 PF00137 ATP synthase subunit C AD2_02971 PF01991 ATP synthase (E/31 kDa) subunit AD2_02973 PF01990 ATP synthase (F/14-kDa) subunit AD2_02974 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AD2_02974 PF16886 ATPsynthase alpha/beta subunit N-term extension AD2_02974 PF02874 ATP synthase alpha/beta family, beta-barrel domain AD2_02975 PF02874 ATP synthase alpha/beta family, beta-barrel domain AD2_02975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AD2_02976 PF01813 ATP synthase subunit D AD2_02977 PF12848 ABC transporter AD2_02977 PF00005 ABC transporter AD2_02984 PF00004 ATPase family associated with various cellular activities (AAA) AD2_02984 PF01434 Peptidase family M41 AD2_02984 PF17862 AAA+ lid domain AD2_02986 PF00497 Bacterial extracellular solute-binding proteins, family 3 AD2_02987 PF00528 Binding-protein-dependent transport system inner membrane component AD2_02988 PF00005 ABC transporter AD2_02989 PF01339 CheB methylesterase AD2_02989 PF00072 Response regulator receiver domain AD2_02990 PF03705 CheR methyltransferase, all-alpha domain AD2_02990 PF01739 CheR methyltransferase, SAM binding domain AD2_02991 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AD2_02992 PF07194 P2 response regulator binding domain AD2_02992 PF01627 Hpt domain AD2_02992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_02992 PF01584 CheW-like domain AD2_02992 PF02895 Signal transducing histidine kinase, homodimeric domain AD2_02993 PF01584 CheW-like domain AD2_02994 PF00589 Phage integrase family AD2_02995 PF12833 Helix-turn-helix domain AD2_02995 PF06445 GyrI-like small molecule binding domain AD2_02998 PF00005 ABC transporter AD2_03004 PF09827 CRISPR associated protein Cas2 AD2_03005 PF01867 CRISPR associated protein Cas1 AD2_03007 PF18019 HD domain AD2_03007 PF00270 DEAD/DEAH box helicase AD2_03007 PF18395 Cas3 C-terminal domain AD2_03013 PF02673 Bacitracin resistance protein BacA AD2_03014 PF01554 MatE AD2_03017 PF00795 Carbon-nitrogen hydrolase AD2_03022 PF02590 Predicted SPOUT methyltransferase AD2_03023 PF00753 Metallo-beta-lactamase superfamily AD2_03024 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AD2_03028 PF00672 HAMP domain AD2_03028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AD2_03028 PF00512 His Kinase A (phospho-acceptor) domain AD2_03028 PF13426 PAS domain AD2_03029 PF00486 Transcriptional regulatory protein, C terminal AD2_03029 PF00072 Response regulator receiver domain AD2_03032 PF02719 Polysaccharide biosynthesis protein AD2_03033 PF14667 Polysaccharide biosynthesis C-terminal domain AD2_03034 PF13439 Glycosyltransferase Family 4 AD2_03034 PF00534 Glycosyl transferases group 1 AD2_03036 PF00534 Glycosyl transferases group 1 AD2_03038 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AD2_03038 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AD2_03038 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AD2_03042 PF02397 Bacterial sugar transferase AD2_03043 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AD2_03046 PF00963 Cohesin domain AD2_03046 PF00395 S-layer homology domain AD2_03047 PF00269 Small, acid-soluble spore proteins, alpha/beta type AD2_03048 PF07486 Cell Wall Hydrolase AD2_03050 PF00571 CBS domain AD2_03052 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AD2_03052 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AD2_03053 PF00890 FAD binding domain AD2_03053 PF02910 Fumarate reductase flavoprotein C-term AD2_03054 PF02445 Quinolinate synthetase A protein AD2_03060 PF00942 Cellulose binding domain AD2_03060 PF00759 Glycosyl hydrolase family 9 AD2_03061 PF03989 DNA gyrase C-terminal domain, beta-propeller AD2_03061 PF00521 DNA gyrase/topoisomerase IV, subunit A AD2_03062 PF17762 HTH domain found in ParB protein AD2_03062 PF02195 ParB-like nuclease domain AD2_03063 PF02527 rRNA small subunit methyltransferase G AD2_03064 PF01134 Glucose inhibited division protein A AD2_03064 PF13932 GidA associated domain AD2_03065 PF10396 GTP-binding protein TrmE N-terminus AD2_03065 PF01926 50S ribosome-binding GTPase AD2_03065 PF12631 MnmE helical domain AD2_03066 PF14804 Jag N-terminus AD2_03066 PF01424 R3H domain AD2_03067 PF02096 60Kd inner membrane protein AD2_03068 PF01809 Putative membrane protein insertion efficiency factor AD2_03069 PF00825 Ribonuclease P AD2_03070 PF00468 Ribosomal protein L34