locus-tag class description Cthe_0015 PF16369 C-terminal lipocalin-like domain Cthe_0015 PF04616 Glycosyl hydrolases family 43 Cthe_0017 PF07556 Protein of unknown function (DUF1538) Cthe_0020 PF06968 Biotin and Thiamin Synthesis associated domain Cthe_0020 PF04055 Radical SAM superfamily Cthe_0022 PF00155 Aminotransferase class I and II Cthe_0023 PF12697 Alpha/beta hydrolase family Cthe_0024 PF13847 Methyltransferase domain Cthe_0025 PF00202 Aminotransferase class-III Cthe_0032 PF02156 Glycosyl hydrolase family 26 Cthe_0033 PF00009 Elongation factor Tu GTP binding domain Cthe_0033 PF03764 Elongation factor G, domain IV Cthe_0033 PF14492 Elongation Factor G, domain II Cthe_0033 PF00679 Elongation factor G C-terminus Cthe_0035 PF02906 Iron only hydrogenase large subunit, C-terminal domain Cthe_0035 PF02256 Iron hydrogenase small subunit Cthe_0035 PF00037 4Fe-4S binding domain Cthe_0035 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Cthe_0036 PF03063 Prismane/CO dehydrogenase family Cthe_0037 PF00011 Hsp20/alpha crystallin family Cthe_0038 PF01584 CheW-like domain Cthe_0039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_0039 PF00672 HAMP domain Cthe_0039 PF12729 Four helix bundle sensory module for signal transduction Cthe_0040 PF00942 Cellulose binding domain Cthe_0040 PF00759 Glycosyl hydrolase family 9 Cthe_0042 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Cthe_0042 PF01926 50S ribosome-binding GTPase Cthe_0043 PF00759 Glycosyl hydrolase family 9 Cthe_0043 PF00942 Cellulose binding domain Cthe_0044 PF00331 Glycosyl hydrolase family 10 Cthe_0044 PF00756 Putative esterase Cthe_0044 PF00404 Dockerin type I domain Cthe_0044 PF03422 Carbohydrate binding module (family 6) Cthe_0053 PF00317 Ribonucleotide reductase, all-alpha domain Cthe_0053 PF02867 Ribonucleotide reductase, barrel domain Cthe_0053 PF03477 ATP cone domain Cthe_0054 PF02638 Glycosyl hydrolase-like 10 Cthe_0056 PF02368 Bacterial Ig-like domain (group 2) Cthe_0059 PF12791 Anti-sigma factor N-terminus Cthe_0059 PF00942 Cellulose binding domain Cthe_0060 PF07517 SecA DEAD-like domain Cthe_0060 PF07516 SecA Wing and Scaffold domain Cthe_0060 PF01043 SecA preprotein cross-linking domain Cthe_0060 PF02810 SEC-C motif Cthe_0061 PF02632 BioY family Cthe_0062 PF00884 Sulfatase Cthe_0064 PF02690 Na+/Pi-cotransporter Cthe_0067 PF02146 Sir2 family Cthe_0068 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Cthe_0069 PF03590 Aspartate-ammonia ligase Cthe_0070 PF00152 tRNA synthetases class II (D, K and N) Cthe_0070 PF01336 OB-fold nucleic acid binding domain Cthe_0071 PF02011 Glycosyl hydrolase family 48 Cthe_0071 PF03442 Carbohydrate binding domain X2 Cthe_0071 PF00942 Cellulose binding domain Cthe_0080 PF01584 CheW-like domain Cthe_0081 PF01960 ArgJ family Cthe_0082 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_0082 PF02190 ATP-dependent protease La (LON) substrate-binding domain Cthe_0082 PF05362 Lon protease (S16) C-terminal proteolytic domain Cthe_0085 PF05389 Negative regulator of genetic competence (MecA) Cthe_0087 PF02545 Maf-like protein Cthe_0091 PF03717 Penicillin-binding Protein dimerisation domain Cthe_0091 PF00905 Penicillin binding protein transpeptidase domain Cthe_0092 PF03775 Septum formation inhibitor MinC, C-terminal domain Cthe_0093 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Cthe_0094 PF03776 Septum formation topological specificity factor MinE Cthe_0095 PF02142 MGS-like domain Cthe_0096 PF03698 Uncharacterised protein family (UPF0180) Cthe_0097 PF01551 Peptidase family M23 Cthe_0098 PF02163 Peptidase family M50 Cthe_0098 PF00571 CBS domain Cthe_0099 PF02219 Methylenetetrahydrofolate reductase Cthe_0101 PF00465 Iron-containing alcohol dehydrogenase Cthe_0102 PF02390 Putative methyltransferase Cthe_0103 PF01894 Uncharacterised protein family UPF0047 Cthe_0104 PF01872 RibD C-terminal domain Cthe_0104 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Cthe_0105 PF00677 Lumazine binding domain Cthe_0106 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Cthe_0106 PF00925 GTP cyclohydrolase II Cthe_0107 PF00885 6,7-dimethyl-8-ribityllumazine synthase Cthe_0110 PF02603 HPr Serine kinase N terminus Cthe_0110 PF07475 HPr Serine kinase C-terminal domain Cthe_0111 PF02811 PHP domain Cthe_0112 PF01565 FAD binding domain Cthe_0112 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Cthe_0113 PF03668 P-loop ATPase protein family Cthe_0114 PF01933 Uncharacterised protein family UPF0052 Cthe_0116 PF02650 WhiA C-terminal HTH domain Cthe_0116 PF10298 WhiA N-terminal LAGLIDADG-like domain Cthe_0116 PF14527 WhiA LAGLIDADG-like domain Cthe_0117 PF00381 PTS HPr component phosphorylation site Cthe_0118 PF01740 STAS domain Cthe_0119 PF13581 Histidine kinase-like ATPase domain Cthe_0120 PF04545 Sigma-70, region 4 Cthe_0120 PF04539 Sigma-70 region 3 Cthe_0120 PF04542 Sigma-70 region 2 Cthe_0122 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Cthe_0124 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Cthe_0125 PF14097 Stage V sporulation protein AE1 Cthe_0127 PF00588 SpoU rRNA Methylase family Cthe_0128 PF13936 Helix-turn-helix domain Cthe_0129 PF00072 Response regulator receiver domain Cthe_0129 PF01966 HD domain Cthe_0130 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Cthe_0130 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Cthe_0131 PF00550 Phosphopantetheine attachment site Cthe_0132 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Cthe_0132 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Cthe_0133 PF00501 AMP-binding enzyme Cthe_0133 PF13193 AMP-binding enzyme C-terminal domain Cthe_0135 PF00550 Phosphopantetheine attachment site Cthe_0135 PF02801 Beta-ketoacyl synthase, C-terminal domain Cthe_0135 PF00698 Acyl transferase domain Cthe_0135 PF16197 Ketoacyl-synthetase C-terminal extension Cthe_0135 PF00668 Condensation domain Cthe_0135 PF00109 Beta-ketoacyl synthase, N-terminal domain Cthe_0137 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Cthe_0137 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Cthe_0138 PF00162 Phosphoglycerate kinase Cthe_0139 PF00121 Triosephosphate isomerase Cthe_0140 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Cthe_0140 PF01676 Metalloenzyme superfamily Cthe_0141 PF13936 Helix-turn-helix domain Cthe_0142 PF01966 HD domain Cthe_0143 PF00113 Enolase, C-terminal TIM barrel domain Cthe_0143 PF03952 Enolase, N-terminal domain Cthe_0146 PF08206 Ribonuclease B OB domain Cthe_0146 PF00773 RNB domain Cthe_0146 PF00575 S1 RNA binding domain Cthe_0146 PF17876 Cold shock domain Cthe_0148 PF00872 Transposase, Mutator family Cthe_0150 PF04055 Radical SAM superfamily Cthe_0150 PF01938 TRAM domain Cthe_0150 PF00919 Uncharacterized protein family UPF0004 Cthe_0151 PF06135 IreB regulatory phosphoprotein Cthe_0152 PF00248 Aldo/keto reductase family Cthe_0153 PF03652 Holliday junction resolvase Cthe_0154 PF06949 Protein of unknown function (DUF1292) Cthe_0155 PF11258 Protein of unknown function (DUF3048) N-terminal domain Cthe_0155 PF17479 Protein of unknown function (DUF3048) C-terminal domain Cthe_0158 PF10150 Ribonuclease E/G family Cthe_0158 PF00575 S1 RNA binding domain Cthe_0159 PF13936 Helix-turn-helix domain Cthe_0160 PF00829 Ribosomal prokaryotic L21 protein Cthe_0162 PF01016 Ribosomal L27 protein Cthe_0163 PF09269 Domain of unknown function (DUF1967) Cthe_0163 PF01018 GTP1/OBG Cthe_0163 PF01926 50S ribosome-binding GTPase Cthe_0164 PF01985 CRS1 / YhbY (CRM) domain Cthe_0166 PF08331 Domain of unknown function (DUF1730) Cthe_0167 PF00072 Response regulator receiver domain Cthe_0167 PF01339 CheB methylesterase Cthe_0173 PF01593 Flavin containing amine oxidoreductase Cthe_0174 PF00884 Sulfatase Cthe_0178 PF14698 Argininosuccinate lyase C-terminal Cthe_0178 PF00206 Lyase Cthe_0179 PF00764 Arginosuccinate synthase Cthe_0180 PF02075 Crossover junction endodeoxyribonuclease RuvC Cthe_0181 PF07499 RuvA, C-terminal domain Cthe_0181 PF01330 RuvA N terminal domain Cthe_0182 PF17864 RuvB AAA lid domain Cthe_0182 PF05491 RuvB C-terminal winged helix domain Cthe_0182 PF05496 Holliday junction DNA helicase RuvB P-loop domain Cthe_0183 PF02677 Epoxyqueuosine reductase QueH Cthe_0185 PF01520 N-acetylmuramoyl-L-alanine amidase Cthe_0186 PF16363 GDP-mannose 4,6 dehydratase Cthe_0187 PF10646 Sporulation and spore germination Cthe_0188 PF01138 3' exoribonuclease family, domain 1 Cthe_0188 PF03725 3' exoribonuclease family, domain 2 Cthe_0189 PF01725 Ham1 family Cthe_0190 PF00404 Dockerin type I domain Cthe_0190 PF01270 Glycosyl hydrolases family 8 Cthe_0191 PF00722 Glycosyl hydrolases family 16 Cthe_0191 PF00404 Dockerin type I domain Cthe_0192 PF13936 Helix-turn-helix domain Cthe_0193 PF00999 Sodium/hydrogen exchanger family Cthe_0196 PF00120 Glutamine synthetase, catalytic domain Cthe_0196 PF18318 Glutamine synthetase C-terminal domain Cthe_0196 PF12437 Glutamine synthetase type III N terminal Cthe_0197 PF00310 Glutamine amidotransferases class-II Cthe_0198 PF13187 4Fe-4S dicluster domain Cthe_0198 PF01645 Conserved region in glutamate synthase Cthe_0199 PF13247 4Fe-4S dicluster domain Cthe_0199 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Cthe_0199 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_0200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Cthe_0200 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Cthe_0200 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_0200 PF18267 Rubredoxin NAD+ reductase C-terminal domain Cthe_0200 PF04324 BFD-like [2Fe-2S] binding domain Cthe_0202 PF00120 Glutamine synthetase, catalytic domain Cthe_0202 PF03951 Glutamine synthetase, beta-Grasp domain Cthe_0206 PF00580 UvrD/REP helicase N-terminal domain Cthe_0206 PF13361 UvrD-like helicase C-terminal domain Cthe_0208 PF01368 DHH family Cthe_0208 PF02272 DHHA1 domain Cthe_0208 PF17768 RecJ OB domain Cthe_0208 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Cthe_0209 PF00535 Glycosyl transferase family 2 Cthe_0210 PF00356 Bacterial regulatory proteins, lacI family Cthe_0211 PF00404 Dockerin type I domain Cthe_0211 PF00722 Glycosyl hydrolases family 16 Cthe_0212 PF00232 Glycosyl hydrolase family 1 Cthe_0214 PF01409 tRNA synthetases class II core domain (F) Cthe_0214 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Cthe_0215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Cthe_0215 PF01588 Putative tRNA binding domain Cthe_0215 PF03147 Ferredoxin-fold anticodon binding domain Cthe_0215 PF03483 B3/4 domain Cthe_0215 PF03484 tRNA synthetase B5 domain Cthe_0217 PF00342 Phosphoglucose isomerase Cthe_0218 PF00149 Calcineurin-like phosphoesterase Cthe_0223 PF13538 UvrD-like helicase C-terminal domain Cthe_0229 PF01370 NAD dependent epimerase/dehydratase family Cthe_0231 PF04055 Radical SAM superfamily Cthe_0231 PF06463 Molybdenum Cofactor Synthesis C Cthe_0233 PF13302 Acetyltransferase (GNAT) domain Cthe_0234 PF00501 AMP-binding enzyme Cthe_0234 PF13193 AMP-binding enzyme C-terminal domain Cthe_0235 PF00462 Glutaredoxin Cthe_0236 PF00248 Aldo/keto reductase family Cthe_0237 PF00072 Response regulator receiver domain Cthe_0237 PF00486 Transcriptional regulatory protein, C terminal Cthe_0239 PF00404 Dockerin type I domain Cthe_0239 PF01270 Glycosyl hydrolases family 8 Cthe_0243 PF01471 Putative peptidoglycan binding domain Cthe_0243 PF07486 Cell Wall Hydrolase Cthe_0244 PF00403 Heavy-metal-associated domain Cthe_0245 PF01022 Bacterial regulatory protein, arsR family Cthe_0246 PF18370 Rhamnogalacturonan I lyases beta-sheet domain Cthe_0247 PF01624 MutS domain I Cthe_0247 PF05188 MutS domain II Cthe_0247 PF05192 MutS domain III Cthe_0247 PF05190 MutS family domain IV Cthe_0247 PF00488 MutS domain V Cthe_0249 PF03415 Clostripain family Cthe_0250 PF01139 tRNA-splicing ligase RtcB Cthe_0253 PF07726 ATPase family associated with various cellular activities (AAA) Cthe_0253 PF17863 AAA lid domain Cthe_0256 PF00356 Bacterial regulatory proteins, lacI family Cthe_0257 PF00437 Type II/IV secretion system protein Cthe_0258 PF00404 Dockerin type I domain Cthe_0260 PF12791 Anti-sigma factor N-terminus Cthe_0262 PF00171 Aldehyde dehydrogenase family Cthe_0265 PF00266 Aminotransferase class-V Cthe_0266 PF00672 HAMP domain Cthe_0266 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_0266 PF17200 Single Cache domain 2 Cthe_0267 PF00942 Cellulose binding domain Cthe_0267 PF12791 Anti-sigma factor N-terminus Cthe_0269 PF01270 Glycosyl hydrolases family 8 Cthe_0269 PF00404 Dockerin type I domain Cthe_0270 PF00704 Glycosyl hydrolases family 18 Cthe_0270 PF00041 Fibronectin type III domain Cthe_0271 PF00942 Cellulose binding domain Cthe_0271 PF00759 Glycosyl hydrolase family 9 Cthe_0272 PF07943 Penicillin-binding protein 5, C-terminal domain Cthe_0272 PF00768 D-alanyl-D-alanine carboxypeptidase Cthe_0273 PF01966 HD domain Cthe_0274 PF00942 Cellulose binding domain Cthe_0274 PF00759 Glycosyl hydrolase family 9 Cthe_0275 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Cthe_0275 PF06165 Glycosyltransferase family 36 Cthe_0276 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Cthe_0276 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Cthe_0277 PF10672 S-adenosylmethionine-dependent methyltransferase Cthe_0277 PF02926 THUMP domain Cthe_0277 PF01170 Putative RNA methylase family UPF0020 Cthe_0278 PF01479 S4 domain Cthe_0278 PF00849 RNA pseudouridylate synthase Cthe_0282 PF00534 Glycosyl transferases group 1 Cthe_0282 PF08323 Starch synthase catalytic domain Cthe_0283 PF00248 Aldo/keto reductase family Cthe_0285 PF00180 Isocitrate/isopropylmalate dehydrogenase Cthe_0286 PF00512 His Kinase A (phospho-acceptor) domain Cthe_0286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0287 PF00512 His Kinase A (phospho-acceptor) domain Cthe_0287 PF09308 LuxQ, periplasmic Cthe_0287 PF00072 Response regulator receiver domain Cthe_0287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0288 PF01739 CheR methyltransferase, SAM binding domain Cthe_0288 PF03705 CheR methyltransferase, all-alpha domain Cthe_0289 PF04851 Type III restriction enzyme, res subunit Cthe_0289 PF13307 Helicase C-terminal domain Cthe_0290 PF03447 Homoserine dehydrogenase, NAD binding domain Cthe_0290 PF00742 Homoserine dehydrogenase Cthe_0290 PF01842 ACT domain Cthe_0291 PF03190 Protein of unknown function, DUF255 Cthe_0292 PF00872 Transposase, Mutator family Cthe_0295 PF00266 Aminotransferase class-V Cthe_0298 PF02203 Tar ligand binding domain homologue Cthe_0298 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_0298 PF00672 HAMP domain Cthe_0299 PF01554 MatE Cthe_0300 PF00188 Cysteine-rich secretory protein family Cthe_0301 PF06738 Putative threonine/serine exporter Cthe_0302 PF12821 Threonine/Serine exporter, ThrE Cthe_0304 PF13936 Helix-turn-helix domain Cthe_0305 PF01751 Toprim domain Cthe_0305 PF00986 DNA gyrase B subunit, carboxyl terminus Cthe_0305 PF00204 DNA gyrase B Cthe_0305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0306 PF03989 DNA gyrase C-terminal domain, beta-propeller Cthe_0306 PF00521 DNA gyrase/topoisomerase IV, subunit A Cthe_0309 PF00271 Helicase conserved C-terminal domain Cthe_0309 PF04851 Type III restriction enzyme, res subunit Cthe_0309 PF02151 UvrB/uvrC motif Cthe_0309 PF12344 Ultra-violet resistance protein B Cthe_0309 PF17757 UvrB interaction domain Cthe_0310 PF06725 3D domain Cthe_0310 PF03990 G5-linked-Ubiquitin-like domain Cthe_0310 PF07501 G5 domain Cthe_0311 PF17755 UvrA DNA-binding domain Cthe_0311 PF17760 UvrA interaction domain Cthe_0312 PF17871 AAA lid domain Cthe_0312 PF02861 Clp amino terminal domain, pathogenicity island component Cthe_0312 PF10431 C-terminal, D2-small domain, of ClpB protein Cthe_0312 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_0312 PF07724 AAA domain (Cdc48 subfamily) Cthe_0315 PF04542 Sigma-70 region 2 Cthe_0316 PF12791 Anti-sigma factor N-terminus Cthe_0316 PF07691 PA14 domain Cthe_0318 PF03734 L,D-transpeptidase catalytic domain Cthe_0318 PF17964 Bacterial Ig domain Cthe_0319 PF00596 Class II Aldolase and Adducin N-terminal domain Cthe_0322 PF01915 Glycosyl hydrolase family 3 C-terminal domain Cthe_0322 PF00933 Glycosyl hydrolase family 3 N terminal domain Cthe_0324 PF10458 Valyl tRNA synthetase tRNA binding arm Cthe_0324 PF08264 Anticodon-binding domain of tRNA Cthe_0324 PF00133 tRNA synthetases class I (I, L, M and V) Cthe_0325 PF02540 NAD synthase Cthe_0325 PF00795 Carbon-nitrogen hydrolase Cthe_0327 PF00395 S-layer homology domain Cthe_0327 PF00963 Cohesin domain Cthe_0328 PF00009 Elongation factor Tu GTP binding domain Cthe_0328 PF03144 Elongation factor Tu domain 2 Cthe_0328 PF16658 Class II release factor RF3, C-terminal domain Cthe_0330 PF08241 Methyltransferase domain Cthe_0332 PF03129 Anticodon binding domain Cthe_0332 PF02824 TGS domain Cthe_0332 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Cthe_0332 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Cthe_0334 PF13581 Histidine kinase-like ATPase domain Cthe_0335 PF04060 Putative Fe-S cluster Cthe_0339 PF00072 Response regulator receiver domain Cthe_0339 PF09308 LuxQ, periplasmic Cthe_0339 PF00512 His Kinase A (phospho-acceptor) domain Cthe_0339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0341 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Cthe_0341 PF00037 4Fe-4S binding domain Cthe_0341 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Cthe_0342 PF02906 Iron only hydrogenase large subunit, C-terminal domain Cthe_0342 PF02256 Iron hydrogenase small subunit Cthe_0342 PF00037 4Fe-4S binding domain Cthe_0342 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Cthe_0343 PF01613 Flavin reductase like domain Cthe_0344 PF03949 Malic enzyme, NAD binding domain Cthe_0344 PF00390 Malic enzyme, N-terminal domain Cthe_0345 PF00056 lactate/malate dehydrogenase, NAD binding domain Cthe_0345 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Cthe_0347 PF00365 Phosphofructokinase Cthe_0348 PF13936 Helix-turn-helix domain Cthe_0349 PF01116 Fructose-bisphosphate aldolase class-II Cthe_0350 PF10502 Signal peptidase, peptidase S26 Cthe_0354 PF01869 BadF/BadG/BcrA/BcrD ATPase family Cthe_0356 PF00872 Transposase, Mutator family Cthe_0357 PF00343 Carbohydrate phosphorylase Cthe_0357 PF11897 Protein of unknown function (DUF3417) Cthe_0360 PF00085 Thioredoxin Cthe_0362 PF01037 Lrp/AsnC ligand binding domain Cthe_0363 PF00155 Aminotransferase class I and II Cthe_0364 PF01381 Helix-turn-helix Cthe_0365 PF00472 RF-1 domain Cthe_0365 PF03462 PCRF domain Cthe_0367 PF03807 NADP oxidoreductase coenzyme F420-dependent Cthe_0367 PF14748 Pyrroline-5-carboxylate reductase dimerisation Cthe_0368 PF00731 AIR carboxylase Cthe_0369 PF01969 Protein of unknown function DUF111 Cthe_0371 PF00872 Transposase, Mutator family Cthe_0372 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Cthe_0372 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Cthe_0372 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_0373 PF00175 Oxidoreductase NAD-binding domain Cthe_0373 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Cthe_0374 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Cthe_0374 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Cthe_0375 PF02540 NAD synthase Cthe_0375 PF00958 GMP synthase C terminal domain Cthe_0375 PF00117 Glutamine amidotransferase class-I Cthe_0384 PF00005 ABC transporter Cthe_0384 PF02687 FtsX-like permease family Cthe_0384 PF12704 MacB-like periplasmic core domain Cthe_0388 PF08240 Alcohol dehydrogenase GroES-like domain Cthe_0388 PF00107 Zinc-binding dehydrogenase Cthe_0389 PF00294 pfkB family carbohydrate kinase Cthe_0390 PF00480 ROK family Cthe_0390 PF01325 Iron dependent repressor, N-terminal DNA binding domain Cthe_0391 PF00005 ABC transporter Cthe_0392 PF02653 Branched-chain amino acid transport system / permease component Cthe_0393 PF13407 Periplasmic binding protein domain Cthe_0394 PF00465 Iron-containing alcohol dehydrogenase Cthe_0395 PF05025 RbsD / FucU transport protein family Cthe_0396 PF00664 ABC transporter transmembrane region Cthe_0396 PF00005 ABC transporter Cthe_0397 PF00664 ABC transporter transmembrane region Cthe_0397 PF00005 ABC transporter Cthe_0398 PF01906 Putative heavy-metal-binding Cthe_0403 PF04542 Sigma-70 region 2 Cthe_0404 PF12791 Anti-sigma factor N-terminus Cthe_0404 PF00942 Cellulose binding domain Cthe_0405 PF00331 Glycosyl hydrolase family 10 Cthe_0405 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_0405 PF00942 Cellulose binding domain Cthe_0408 PF03707 Bacterial signalling protein N terminal repeat Cthe_0408 PF00563 EAL domain Cthe_0408 PF00990 Diguanylate cyclase, GGDEF domain Cthe_0410 PF05167 Uncharacterised ACR (DUF711) Cthe_0412 PF02018 Carbohydrate binding domain Cthe_0412 PF00404 Dockerin type I domain Cthe_0412 PF00759 Glycosyl hydrolase family 9 Cthe_0412 PF02927 Cellulase N-terminal ig-like domain Cthe_0413 PF02927 Cellulase N-terminal ig-like domain Cthe_0413 PF02018 Carbohydrate binding domain Cthe_0413 PF00759 Glycosyl hydrolase family 9 Cthe_0413 PF00404 Dockerin type I domain Cthe_0413 PF00759 Glycosyl hydrolase family 9 Cthe_0413 PF00404 Dockerin type I domain Cthe_0413 PF02927 Cellulase N-terminal ig-like domain Cthe_0413 PF02018 Carbohydrate binding domain Cthe_0414 PF05067 Manganese containing catalase Cthe_0415 PF12652 CotJB protein Cthe_0417 PF00312 Ribosomal protein S15 Cthe_0418 PF00013 KH domain Cthe_0418 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Cthe_0418 PF01138 3' exoribonuclease family, domain 1 Cthe_0418 PF03725 3' exoribonuclease family, domain 2 Cthe_0418 PF00575 S1 RNA binding domain Cthe_0419 PF05193 Peptidase M16 inactive domain Cthe_0419 PF00675 Insulinase (Peptidase family M16) Cthe_0421 PF02441 Flavoprotein Cthe_0422 PF02629 CoA binding domain Cthe_0422 PF06971 Putative DNA-binding protein N-terminus Cthe_0423 PF00171 Aldehyde dehydrogenase family Cthe_0423 PF00465 Iron-containing alcohol dehydrogenase Cthe_0429 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Cthe_0429 PF00037 4Fe-4S binding domain Cthe_0429 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Cthe_0430 PF02256 Iron hydrogenase small subunit Cthe_0430 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Cthe_0430 PF02906 Iron only hydrogenase large subunit, C-terminal domain Cthe_0430 PF00037 4Fe-4S binding domain Cthe_0433 PF00759 Glycosyl hydrolase family 9 Cthe_0433 PF00942 Cellulose binding domain Cthe_0438 PF00404 Dockerin type I domain Cthe_0439 PF07685 CobB/CobQ-like glutamine amidotransferase domain Cthe_0440 PF08353 Domain of unknown function (DUF1727) Cthe_0440 PF08245 Mur ligase middle domain Cthe_0441 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cthe_0442 PF03799 Cell division protein FtsQ Cthe_0442 PF08478 POTRA domain, FtsQ-type Cthe_0443 PF06947 Protein of unknown function (DUF1290) Cthe_0444 PF02491 SHS2 domain inserted in FTSA Cthe_0445 PF00091 Tubulin/FtsZ family, GTPase domain Cthe_0445 PF12327 FtsZ family, C-terminal domain Cthe_0447 PF04545 Sigma-70, region 4 Cthe_0447 PF04542 Sigma-70 region 2 Cthe_0448 PF04539 Sigma-70 region 3 Cthe_0448 PF04545 Sigma-70, region 4 Cthe_0448 PF04542 Sigma-70 region 2 Cthe_0449 PF05239 PRC-barrel domain Cthe_0450 PF03477 ATP cone domain Cthe_0452 PF00404 Dockerin type I domain Cthe_0452 PF00963 Cohesin domain Cthe_0452 PF00942 Cellulose binding domain Cthe_0455 PF01078 Magnesium chelatase, subunit ChlI Cthe_0455 PF13335 Magnesium chelatase, subunit ChlI C-terminal Cthe_0456 PF01894 Uncharacterised protein family UPF0047 Cthe_0458 PF03372 Endonuclease/Exonuclease/phosphatase family Cthe_0459 PF02481 DNA recombination-mediator protein A Cthe_0459 PF17782 DprA winged helix domain Cthe_0460 PF01396 Topoisomerase DNA binding C4 zinc finger Cthe_0460 PF01751 Toprim domain Cthe_0460 PF01131 DNA topoisomerase Cthe_0461 PF01134 Glucose inhibited division protein A Cthe_0463 PF00460 Flagella basal body rod protein Cthe_0463 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Cthe_0464 PF02049 Flagellar hook-basal body complex protein FliE Cthe_0466 PF14842 FliG N-terminal domain Cthe_0466 PF01706 FliG C-terminal domain Cthe_0466 PF14841 FliG middle domain Cthe_0467 PF02108 Flagellar assembly protein FliH Cthe_0468 PF02874 ATP synthase alpha/beta family, beta-barrel domain Cthe_0468 PF18269 T3SS EscN ATPase C-terminal domain Cthe_0468 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Cthe_0472 PF03963 Flagellar hook capping protein - N-terminal region Cthe_0474 PF07559 Flagellar basal body protein FlaE Cthe_0474 PF00460 Flagella basal body rod protein Cthe_0474 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Cthe_0475 PF06289 Flagellar and Swarming motility proteins Cthe_0477 PF02154 Flagellar motor switch protein FliM Cthe_0477 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Cthe_0478 PF04509 CheC-like family Cthe_0478 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Cthe_0479 PF00072 Response regulator receiver domain Cthe_0481 PF00813 FliP family Cthe_0482 PF01313 Bacterial export proteins, family 3 Cthe_0483 PF01311 Bacterial export proteins, family 1 Cthe_0484 PF01312 FlhB HrpN YscU SpaS Family Cthe_0485 PF00771 FHIPEP family Cthe_0486 PF00448 SRP54-type protein, GTPase domain Cthe_0487 PF10609 NUBPL iron-transfer P-loop NTPase Cthe_0489 PF00072 Response regulator receiver domain Cthe_0489 PF01339 CheB methylesterase Cthe_0490 PF01627 Hpt domain Cthe_0490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0490 PF02895 Signal transducing histidine kinase, homodimeric domain Cthe_0490 PF01584 CheW-like domain Cthe_0490 PF07194 P2 response regulator binding domain Cthe_0491 PF01584 CheW-like domain Cthe_0492 PF04509 CheC-like family Cthe_0493 PF03975 CheD chemotactic sensory transduction Cthe_0496 PF13936 Helix-turn-helix domain Cthe_0504 PF09587 Bacterial capsule synthesis protein PGA_cap Cthe_0505 PF01228 Glycine radical Cthe_0505 PF02901 Pyruvate formate lyase-like Cthe_0506 PF04055 Radical SAM superfamily Cthe_0507 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Cthe_0507 PF07733 Bacterial DNA polymerase III alpha NTPase domain Cthe_0507 PF00929 Exonuclease Cthe_0507 PF02811 PHP domain Cthe_0507 PF14579 Helix-hairpin-helix motif Cthe_0509 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Cthe_0510 PF13936 Helix-turn-helix domain Cthe_0511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0511 PF00512 His Kinase A (phospho-acceptor) domain Cthe_0511 PF00989 PAS fold Cthe_0511 PF16736 Single Cache-like Cthe_0512 PF00589 Phage integrase family Cthe_0512 PF14659 Phage integrase, N-terminal SAM-like domain Cthe_0515 PF03050 Transposase IS66 family Cthe_0515 PF13817 IS66 C-terminal element Cthe_0515 PF13007 Transposase C of IS166 homeodomain Cthe_0515 PF13005 zinc-finger binding domain of transposase IS66 Cthe_0518 PF08774 VRR-NUC domain Cthe_0518 PF04851 Type III restriction enzyme, res subunit Cthe_0519 PF01555 DNA methylase Cthe_0519 PF18273 Type III R-M EcoP15I C-terminal domain Cthe_0521 PF00271 Helicase conserved C-terminal domain Cthe_0521 PF00176 SNF2 family N-terminal domain Cthe_0523 PF02796 Helix-turn-helix domain of resolvase Cthe_0523 PF00239 Resolvase, N terminal domain Cthe_0534 PF03412 Peptidase C39 family Cthe_0534 PF00664 ABC transporter transmembrane region Cthe_0534 PF00005 ABC transporter Cthe_0536 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_0536 PF00404 Dockerin type I domain Cthe_0537 PF00486 Transcriptional regulatory protein, C terminal Cthe_0537 PF00072 Response regulator receiver domain Cthe_0538 PF00672 HAMP domain Cthe_0538 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0538 PF00512 His Kinase A (phospho-acceptor) domain Cthe_0539 PF00005 ABC transporter Cthe_0540 PF00005 ABC transporter Cthe_0540 PF12704 MacB-like periplasmic core domain Cthe_0541 PF01321 Creatinase/Prolidase N-terminal domain Cthe_0541 PF00557 Metallopeptidase family M24 Cthe_0543 PF00759 Glycosyl hydrolase family 9 Cthe_0543 PF00942 Cellulose binding domain Cthe_0543 PF00404 Dockerin type I domain Cthe_0546 PF01475 Ferric uptake regulator family Cthe_0547 PF01297 Zinc-uptake complex component A periplasmic Cthe_0548 PF00005 ABC transporter Cthe_0549 PF00950 ABC 3 transport family Cthe_0550 PF00183 Hsp90 protein Cthe_0551 PF13193 AMP-binding enzyme C-terminal domain Cthe_0551 PF00501 AMP-binding enzyme Cthe_0553 PF03466 LysR substrate binding domain Cthe_0553 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Cthe_0554 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Cthe_0554 PF02769 AIR synthase related protein, C-terminal domain Cthe_0554 PF00586 AIR synthase related protein, N-terminal domain Cthe_0555 PF05698 Bacterial trigger factor protein (TF) C-terminus Cthe_0556 PF13537 Glutamine amidotransferase domain Cthe_0556 PF00733 Asparagine synthase Cthe_0557 PF01522 Polysaccharide deacetylase Cthe_0560 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_0561 PF02424 ApbE family Cthe_0564 PF00348 Polyprenyl synthetase Cthe_0566 PF04851 Type III restriction enzyme, res subunit Cthe_0566 PF00271 Helicase conserved C-terminal domain Cthe_0566 PF17764 3′ DNA-binding domain (3′BD) Cthe_0566 PF18074 Primosomal protein N C-terminal domain Cthe_0566 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Cthe_0567 PF01327 Polypeptide deformylase Cthe_0568 PF02911 Formyl transferase, C-terminal domain Cthe_0568 PF00551 Formyl transferase Cthe_0570 PF04298 Putative neutral zinc metallopeptidase Cthe_0571 PF01029 NusB family Cthe_0571 PF01189 16S rRNA methyltransferase RsmB/F Cthe_0572 PF04055 Radical SAM superfamily Cthe_0574 PF00069 Protein kinase domain Cthe_0574 PF03793 PASTA domain Cthe_0575 PF16745 RsgA N-terminal domain Cthe_0575 PF03193 RsgA GTPase Cthe_0576 PF00834 Ribulose-phosphate 3 epimerase family Cthe_0578 PF00942 Cellulose binding domain Cthe_0578 PF03442 Carbohydrate binding domain X2 Cthe_0578 PF00759 Glycosyl hydrolase family 9 Cthe_0579 PF00881 Nitroreductase family Cthe_0580 PF00155 Aminotransferase class I and II Cthe_0581 PF05670 NFACT protein RNA binding domain Cthe_0582 PF08447 PAS fold Cthe_0582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0582 PF08448 PAS fold Cthe_0583 PF00072 Response regulator receiver domain Cthe_0583 PF00158 Sigma-54 interaction domain Cthe_0587 PF00872 Transposase, Mutator family Cthe_0588 PF13936 Helix-turn-helix domain Cthe_0592 PF13649 Methyltransferase domain Cthe_0594 PF00872 Transposase, Mutator family Cthe_0596 PF01926 50S ribosome-binding GTPase Cthe_0597 PF05690 Thiazole biosynthesis protein ThiG Cthe_0597 PF02597 ThiS family Cthe_0598 PF05690 Thiazole biosynthesis protein ThiG Cthe_0599 PF04055 Radical SAM superfamily Cthe_0599 PF06968 Biotin and Thiamin Synthesis associated domain Cthe_0600 PF00581 Rhodanese-like domain Cthe_0600 PF00899 ThiF family Cthe_0601 PF02581 Thiamine monophosphate synthase Cthe_0602 PF01964 Radical SAM ThiC family Cthe_0605 PF00877 NlpC/P60 family Cthe_0607 PF05343 M42 glutamyl aminopeptidase Cthe_0608 PF05343 M42 glutamyl aminopeptidase Cthe_0609 PF05343 M42 glutamyl aminopeptidase Cthe_0610 PF00155 Aminotransferase class I and II Cthe_0611 PF00753 Metallo-beta-lactamase superfamily Cthe_0611 PF10996 Beta-Casp domain Cthe_0611 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Cthe_0612 PF00474 Sodium:solute symporter family Cthe_0615 PF00501 AMP-binding enzyme Cthe_0615 PF14535 AMP-binding enzyme C-terminal domain Cthe_0617 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_0617 PF12002 MgsA AAA+ ATPase C terminal Cthe_0617 PF16193 AAA C-terminal domain Cthe_0618 PF17910 FeoB cytosolic helical domain Cthe_0618 PF02421 Ferrous iron transport protein B Cthe_0618 PF04023 FeoA domain Cthe_0618 PF07670 Nucleoside recognition Cthe_0618 PF07664 Ferrous iron transport protein B C terminus Cthe_0620 PF01325 Iron dependent repressor, N-terminal DNA binding domain Cthe_0620 PF02742 Iron dependent repressor, metal binding and dimerisation domain Cthe_0621 PF01008 Initiation factor 2 subunit family Cthe_0622 PF01048 Phosphorylase superfamily Cthe_0623 PF01258 Prokaryotic dksA/traR C4-type zinc finger Cthe_0624 PF00942 Cellulose binding domain Cthe_0624 PF12891 Glycoside hydrolase family 44 Cthe_0625 PF00942 Cellulose binding domain Cthe_0625 PF00404 Dockerin type I domain Cthe_0625 PF00759 Glycosyl hydrolase family 9 Cthe_0629 PF00437 Type II/IV secretion system protein Cthe_0629 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Cthe_0634 PF00069 Protein kinase domain Cthe_0634 PF03793 PASTA domain Cthe_0638 PF01580 FtsK/SpoIIIE family Cthe_0638 PF12538 DNA transporter Cthe_0639 PF02806 Alpha amylase, C-terminal all-beta domain Cthe_0639 PF00128 Alpha amylase, catalytic domain Cthe_0639 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Cthe_0640 PF00404 Dockerin type I domain Cthe_0640 PF00722 Glycosyl hydrolases family 16 Cthe_0645 PF02574 Homocysteine S-methyltransferase Cthe_0645 PF00809 Pterin binding enzyme Cthe_0645 PF02965 Vitamin B12 dependent methionine synthase, activation domain Cthe_0645 PF02607 B12 binding domain Cthe_0645 PF02310 B12 binding domain Cthe_0648 PF00749 tRNA synthetases class I (E and Q), catalytic domain Cthe_0652 PF01361 Tautomerase enzyme Cthe_0654 PF04055 Radical SAM superfamily Cthe_0654 PF06968 Biotin and Thiamin Synthesis associated domain Cthe_0655 PF00266 Aminotransferase class-V Cthe_0660 PF00404 Dockerin type I domain Cthe_0661 PF00722 Glycosyl hydrolases family 16 Cthe_0661 PF00404 Dockerin type I domain Cthe_0664 PF03990 G5-linked-Ubiquitin-like domain Cthe_0664 PF07501 G5 domain Cthe_0664 PF06725 3D domain Cthe_0665 PF01145 SPFH domain / Band 7 family Cthe_0666 PF01145 SPFH domain / Band 7 family Cthe_0667 PF03323 Bacillus/Clostridium GerA spore germination protein Cthe_0672 PF03807 NADP oxidoreductase coenzyme F420-dependent Cthe_0672 PF14748 Pyrroline-5-carboxylate reductase dimerisation Cthe_0673 PF00075 RNase H Cthe_0674 PF00293 NUDIX domain Cthe_0675 PF01944 Stage II sporulation protein M Cthe_0676 PF00589 Phage integrase family Cthe_0676 PF02899 Phage integrase, N-terminal SAM-like domain Cthe_0677 PF01676 Metalloenzyme superfamily Cthe_0678 PF02885 Glycosyl transferase family, helical bundle domain Cthe_0678 PF00591 Glycosyl transferase family, a/b domain Cthe_0678 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Cthe_0679 PF07943 Penicillin-binding protein 5, C-terminal domain Cthe_0679 PF00768 D-alanyl-D-alanine carboxypeptidase Cthe_0681 PF00571 CBS domain Cthe_0681 PF00478 IMP dehydrogenase / GMP reductase domain Cthe_0683 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Cthe_0683 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Cthe_0684 PF00571 CBS domain Cthe_0684 PF01368 DHH family Cthe_0684 PF02272 DHHA1 domain Cthe_0684 PF01743 Poly A polymerase head domain Cthe_0684 PF12627 Probable RNA and SrmB- binding site of polymerase A Cthe_0685 PF02163 Peptidase family M50 Cthe_0686 PF00579 tRNA synthetases class I (W and Y) Cthe_0687 PF02616 Segregation and condensation protein ScpA Cthe_0688 PF04079 Segregation and condensation complex subunit ScpB Cthe_0691 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Cthe_0692 PF13936 Helix-turn-helix domain Cthe_0693 PF01479 S4 domain Cthe_0693 PF00849 RNA pseudouridylate synthase Cthe_0694 PF17284 Spermidine synthase tetramerisation domain Cthe_0695 PF00491 Arginase family Cthe_0696 PF06962 Putative rRNA methylase Cthe_0698 PF13936 Helix-turn-helix domain Cthe_0699 PF01039 Carboxyl transferase domain Cthe_0700 PF00364 Biotin-requiring enzyme Cthe_0701 PF00364 Biotin-requiring enzyme Cthe_0701 PF02436 Conserved carboxylase domain Cthe_0701 PF00682 HMGL-like Cthe_0706 PF01380 SIS domain Cthe_0706 PF01418 Helix-turn-helix domain, rpiR family Cthe_0707 PF00300 Histidine phosphatase superfamily (branch 1) Cthe_0712 PF02224 Cytidylate kinase Cthe_0713 PF01553 Acyltransferase Cthe_0714 PF02401 LytB protein Cthe_0714 PF00575 S1 RNA binding domain Cthe_0715 PF02675 S-adenosylmethionine decarboxylase Cthe_0716 PF00334 Nucleoside diphosphate kinase Cthe_0717 PF01739 CheR methyltransferase, SAM binding domain Cthe_0717 PF03705 CheR methyltransferase, all-alpha domain Cthe_0719 PF02082 Transcriptional regulator Cthe_0720 PF00266 Aminotransferase class-V Cthe_0721 PF01592 NifU-like N terminal domain Cthe_0723 PF00579 tRNA synthetases class I (W and Y) Cthe_0725 PF01966 HD domain Cthe_0726 PF02127 Aminopeptidase I zinc metalloprotease (M18) Cthe_0728 PF00589 Phage integrase family Cthe_0728 PF02899 Phage integrase, N-terminal SAM-like domain Cthe_0729 PF00404 Dockerin type I domain Cthe_0729 PF01270 Glycosyl hydrolases family 8 Cthe_0731 PF01202 Shikimate kinase Cthe_0732 PF01264 Chorismate synthase Cthe_0735 PF00395 S-layer homology domain Cthe_0735 PF00963 Cohesin domain Cthe_0736 PF00395 S-layer homology domain Cthe_0736 PF00963 Cohesin domain Cthe_0737 PF01648 4'-phosphopantetheinyl transferase superfamily Cthe_0738 PF00403 Heavy-metal-associated domain Cthe_0740 PF00392 Bacterial regulatory proteins, gntR family Cthe_0740 PF07702 UTRA domain Cthe_0741 PF00206 Lyase Cthe_0741 PF10397 Adenylosuccinate lyase C-terminus Cthe_0743 PF01554 MatE Cthe_0744 PF17820 PDZ domain Cthe_0744 PF03572 Peptidase family S41 Cthe_0744 PF01471 Putative peptidoglycan binding domain Cthe_0745 PF00759 Glycosyl hydrolase family 9 Cthe_0745 PF00404 Dockerin type I domain Cthe_0745 PF00942 Cellulose binding domain Cthe_0747 PF13416 Bacterial extracellular solute-binding protein Cthe_0748 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_0749 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_0750 PF00005 ABC transporter Cthe_0750 PF08402 TOBE domain Cthe_0755 PF00155 Aminotransferase class I and II Cthe_0756 PF01244 Membrane dipeptidase (Peptidase family M19) Cthe_0757 PF04002 RadC-like JAB domain Cthe_0758 PF02021 Uncharacterised protein family UPF0102 Cthe_0761 PF01351 Ribonuclease HII Cthe_0763 PF01926 50S ribosome-binding GTPase Cthe_0764 PF10502 Signal peptidase, peptidase S26 Cthe_0765 PF01245 Ribosomal protein L19 Cthe_0766 PF01746 tRNA (Guanine-1)-methyltransferase Cthe_0767 PF01782 RimM N-terminal domain Cthe_0767 PF05239 PRC-barrel domain Cthe_0769 PF00886 Ribosomal protein S16 Cthe_0770 PF02978 Signal peptide binding domain Cthe_0770 PF02881 SRP54-type protein, helical bundle domain Cthe_0770 PF00448 SRP54-type protein, GTPase domain Cthe_0771 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Cthe_0773 PF00717 Peptidase S24-like Cthe_0773 PF01726 LexA DNA binding domain Cthe_0774 PF17209 Hfq protein Cthe_0776 PF08676 MutL C terminal dimerisation domain Cthe_0776 PF01119 DNA mismatch repair protein, C-terminal domain Cthe_0777 PF05192 MutS domain III Cthe_0777 PF05188 MutS domain II Cthe_0777 PF05190 MutS family domain IV Cthe_0777 PF00488 MutS domain V Cthe_0777 PF01624 MutS domain I Cthe_0779 PF00188 Cysteine-rich secretory protein family Cthe_0780 PF13419 Haloacid dehalogenase-like hydrolase Cthe_0783 PF04055 Radical SAM superfamily Cthe_0783 PF01938 TRAM domain Cthe_0783 PF00919 Uncharacterized protein family UPF0004 Cthe_0786 PF01761 3-dehydroquinate synthase Cthe_0787 PF08264 Anticodon-binding domain of tRNA Cthe_0787 PF00133 tRNA synthetases class I (I, L, M and V) Cthe_0787 PF06827 Zinc finger found in FPG and IleRS Cthe_0788 PF05103 DivIVA protein Cthe_0789 PF01479 S4 domain Cthe_0789 PF17774 Putative RNA-binding domain in YlmH Cthe_0791 PF04472 Cell division protein SepF Cthe_0792 PF01168 Alanine racemase, N-terminal domain Cthe_0794 PF06838 Methionine gamma-lyase Cthe_0795 PF00128 Alpha amylase, catalytic domain Cthe_0795 PF02903 Alpha amylase, N-terminal ig-like domain Cthe_0797 PF00657 GDSL-like Lipase/Acylhydrolase Cthe_0797 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_0797 PF17996 Carbohydrate esterase 2 N-terminal Cthe_0797 PF00404 Dockerin type I domain Cthe_0798 PF00404 Dockerin type I domain Cthe_0798 PF13472 GDSL-like Lipase/Acylhydrolase family Cthe_0799 PF00072 Response regulator receiver domain Cthe_0799 PF00486 Transcriptional regulatory protein, C terminal Cthe_0800 PF16736 Single Cache-like Cthe_0800 PF00989 PAS fold Cthe_0800 PF00512 His Kinase A (phospho-acceptor) domain Cthe_0800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0801 PF00872 Transposase, Mutator family Cthe_0803 PF00849 RNA pseudouridylate synthase Cthe_0805 PF00072 Response regulator receiver domain Cthe_0805 PF00486 Transcriptional regulatory protein, C terminal Cthe_0806 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Cthe_0806 PF00672 HAMP domain Cthe_0806 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0806 PF00072 Response regulator receiver domain Cthe_0806 PF00512 His Kinase A (phospho-acceptor) domain Cthe_0806 PF01627 Hpt domain Cthe_0807 PF00072 Response regulator receiver domain Cthe_0807 PF01339 CheB methylesterase Cthe_0808 PF01739 CheR methyltransferase, SAM binding domain Cthe_0808 PF03705 CheR methyltransferase, all-alpha domain Cthe_0809 PF01584 CheW-like domain Cthe_0810 PF01584 CheW-like domain Cthe_0810 PF02895 Signal transducing histidine kinase, homodimeric domain Cthe_0810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_0810 PF01627 Hpt domain Cthe_0810 PF07194 P2 response regulator binding domain Cthe_0811 PF00072 Response regulator receiver domain Cthe_0812 PF08769 Sporulation initiation factor Spo0A C terminal Cthe_0812 PF00072 Response regulator receiver domain Cthe_0813 PF05580 SpoIVB peptidase S55 Cthe_0813 PF17820 PDZ domain Cthe_0814 PF02463 RecF/RecN/SMC N terminal domain Cthe_0815 PF01316 Arginine repressor, DNA binding domain Cthe_0815 PF02863 Arginine repressor, C-terminal domain Cthe_0816 PF01513 ATP-NAD kinase Cthe_0817 PF00990 Diguanylate cyclase, GGDEF domain Cthe_0819 PF00005 ABC transporter Cthe_0819 PF13732 Domain of unknown function (DUF4162) Cthe_0821 PF00942 Cellulose binding domain Cthe_0821 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_0821 PF12891 Glycoside hydrolase family 44 Cthe_0822 PF01695 IstB-like ATP binding protein Cthe_0823 PF00665 Integrase core domain Cthe_0823 PF02796 Helix-turn-helix domain of resolvase Cthe_0825 PF00404 Dockerin type I domain Cthe_0825 PF02927 Cellulase N-terminal ig-like domain Cthe_0825 PF00759 Glycosyl hydrolase family 9 Cthe_0827 PF01728 FtsJ-like methyltransferase Cthe_0827 PF01479 S4 domain Cthe_0828 PF02780 Transketolase, C-terminal domain Cthe_0828 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Cthe_0828 PF02779 Transketolase, pyrimidine binding domain Cthe_0830 PF02681 Divergent PAP2 family Cthe_0831 PF00348 Polyprenyl synthetase Cthe_0832 PF02609 Exonuclease VII small subunit Cthe_0833 PF02601 Exonuclease VII, large subunit Cthe_0833 PF13742 OB-fold nucleic acid binding domain Cthe_0834 PF01029 NusB family Cthe_0837 PF03780 Asp23 family, cell envelope-related function Cthe_0841 PF09546 Stage III sporulation protein AE (spore_III_AE) Cthe_0842 PF06686 Stage III sporulation protein AC/AD protein family Cthe_0843 PF06686 Stage III sporulation protein AC/AD protein family Cthe_0847 PF09285 Elongation factor P, C-terminal Cthe_0847 PF01132 Elongation factor P (EF-P) OB domain Cthe_0847 PF08207 Elongation factor P (EF-P) KOW-like domain Cthe_0848 PF00557 Metallopeptidase family M24 Cthe_0848 PF01321 Creatinase/Prolidase N-terminal domain Cthe_0849 PF01220 Dehydroquinase class II Cthe_0852 PF01478 Type IV leader peptidase family Cthe_0852 PF06750 Bacterial Peptidase A24 N-terminal domain Cthe_0853 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Cthe_0853 PF00437 Type II/IV secretion system protein Cthe_0854 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Cthe_0854 PF01488 Shikimate / quinate 5-dehydrogenase Cthe_0854 PF08501 Shikimate dehydrogenase substrate binding domain Cthe_0856 PF01063 Amino-transferase class IV Cthe_0857 PF01972 Serine dehydrogenase proteinase Cthe_0857 PF01957 NfeD-like C-terminal, partner-binding Cthe_0858 PF12127 SigmaW regulon antibacterial Cthe_0860 PF02915 Rubrerythrin Cthe_0861 PF03816 Cell envelope-related transcriptional attenuator domain Cthe_0863 PF00120 Glutamine synthetase, catalytic domain Cthe_0863 PF18318 Glutamine synthetase C-terminal domain Cthe_0863 PF12437 Glutamine synthetase type III N terminal Cthe_0871 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Cthe_0872 PF00218 Indole-3-glycerol phosphate synthase Cthe_0873 PF00591 Glycosyl transferase family, a/b domain Cthe_0873 PF02885 Glycosyl transferase family, helical bundle domain Cthe_0874 PF00117 Glutamine amidotransferase class-I Cthe_0874 PF02885 Glycosyl transferase family, helical bundle domain Cthe_0874 PF00591 Glycosyl transferase family, a/b domain Cthe_0875 PF04715 Anthranilate synthase component I, N terminal region Cthe_0875 PF00425 chorismate binding enzyme Cthe_0877 PF06071 Protein of unknown function (DUF933) Cthe_0877 PF01926 50S ribosome-binding GTPase Cthe_0878 PF01584 CheW-like domain Cthe_0879 PF13936 Helix-turn-helix domain Cthe_0880 PF18152 DAHP synthase ferredoxin-like domain Cthe_0880 PF00793 DAHP synthetase I family Cthe_0881 PF00990 Diguanylate cyclase, GGDEF domain Cthe_0882 PF00892 EamA-like transporter family Cthe_0885 PF01121 Dephospho-CoA kinase Cthe_0886 PF01367 5'-3' exonuclease, C-terminal SAM fold Cthe_0886 PF00476 DNA polymerase family A Cthe_0886 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Cthe_0890 PF04542 Sigma-70 region 2 Cthe_0890 PF08281 Sigma-70, region 4 Cthe_0891 PF00072 Response regulator receiver domain Cthe_0892 PF01784 NIF3 (NGG1p interacting factor 3) Cthe_0893 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Cthe_0895 PF03979 Sigma-70 factor, region 1.1 Cthe_0895 PF00140 Sigma-70 factor, region 1.2 Cthe_0895 PF04542 Sigma-70 region 2 Cthe_0895 PF04539 Sigma-70 region 3 Cthe_0895 PF04545 Sigma-70, region 4 Cthe_0896 PF10410 DnaB-helicase binding domain of primase Cthe_0896 PF01807 CHC2 zinc finger Cthe_0896 PF08275 DNA primase catalytic core, N-terminal domain Cthe_0897 PF13286 Phosphohydrolase-associated domain Cthe_0897 PF01966 HD domain Cthe_0898 PF01966 HD domain Cthe_0898 PF11871 Domain of unknown function (DUF3391) Cthe_0900 PF02261 Aspartate decarboxylase Cthe_0901 PF02569 Pantoate-beta-alanine ligase Cthe_0902 PF02548 Ketopantoate hydroxymethyltransferase Cthe_0903 PF07549 SecD/SecF GG Motif Cthe_0903 PF02355 Protein export membrane protein Cthe_0904 PF07549 SecD/SecF GG Motif Cthe_0904 PF02355 Protein export membrane protein Cthe_0905 PF00013 KH domain Cthe_0905 PF01966 HD domain Cthe_0905 PF12072 Domain of unknown function (DUF3552) Cthe_0908 PF01479 S4 domain Cthe_0908 PF00849 RNA pseudouridylate synthase Cthe_0909 PF01252 Signal peptidase (SPase) II Cthe_0910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Cthe_0911 PF02578 Multi-copper polyphenol oxidoreductase laccase Cthe_0912 PF00331 Glycosyl hydrolase family 10 Cthe_0912 PF00756 Putative esterase Cthe_0912 PF00404 Dockerin type I domain Cthe_0912 PF02018 Carbohydrate binding domain Cthe_0913 PF01548 Transposase Cthe_0913 PF02371 Transposase IS116/IS110/IS902 family Cthe_0917 PF00749 tRNA synthetases class I (E and Q), catalytic domain Cthe_0917 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Cthe_0922 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain Cthe_0926 PF00448 SRP54-type protein, GTPase domain Cthe_0926 PF02881 SRP54-type protein, helical bundle domain Cthe_0927 PF06470 SMC proteins Flexible Hinge Domain Cthe_0927 PF02463 RecF/RecN/SMC N terminal domain Cthe_0928 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Cthe_0929 PF04232 Stage V sporulation protein S (SpoVS) Cthe_0931 PF00035 Double-stranded RNA binding motif Cthe_0931 PF14622 Ribonuclease-III-like Cthe_0932 PF00109 Beta-ketoacyl synthase, N-terminal domain Cthe_0932 PF02801 Beta-ketoacyl synthase, C-terminal domain Cthe_0933 PF00550 Phosphopantetheine attachment site Cthe_0935 PF00698 Acyl transferase domain Cthe_0936 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Cthe_0936 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Cthe_0937 PF02504 Fatty acid synthesis protein Cthe_0938 PF03061 Thioesterase superfamily Cthe_0941 PF01066 CDP-alcohol phosphatidyltransferase Cthe_0942 PF04055 Radical SAM superfamily Cthe_0942 PF18693 TRAM domain Cthe_0942 PF00919 Uncharacterized protein family UPF0004 Cthe_0946 PF00300 Histidine phosphatase superfamily (branch 1) Cthe_0947 PF01180 Dihydroorotate dehydrogenase Cthe_0948 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Cthe_0949 PF02142 MGS-like domain Cthe_0949 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Cthe_0949 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Cthe_0950 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Cthe_0950 PF00117 Glutamine amidotransferase class-I Cthe_0951 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Cthe_0952 PF01979 Amidohydrolase family Cthe_0953 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Cthe_0953 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Cthe_0954 PF00156 Phosphoribosyl transferase domain Cthe_0957 PF02699 Preprotein translocase subunit Cthe_0958 PF01702 Queuine tRNA-ribosyltransferase Cthe_0959 PF02547 Queuosine biosynthesis protein Cthe_0960 PF04122 Putative cell wall binding repeat 2 Cthe_0960 PF08486 Stage II sporulation protein Cthe_0961 PF01118 Semialdehyde dehydrogenase, NAD binding domain Cthe_0961 PF02774 Semialdehyde dehydrogenase, dimerisation domain Cthe_0962 PF00701 Dihydrodipicolinate synthetase family Cthe_0963 PF05173 Dihydrodipicolinate reductase, C-terminus Cthe_0963 PF01113 Dihydrodipicolinate reductase, N-terminus Cthe_0964 PF00696 Amino acid kinase family Cthe_0964 PF13840 ACT domain Cthe_0965 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Cthe_0965 PF12557 Cob(I)alamin adenosyltransferase N terminal Cthe_0968 PF00580 UvrD/REP helicase N-terminal domain Cthe_0968 PF13361 UvrD-like helicase C-terminal domain Cthe_0970 PF00872 Transposase, Mutator family Cthe_0973 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cthe_0974 PF04101 Glycosyltransferase family 28 C-terminal domain Cthe_0974 PF03033 Glycosyltransferase family 28 N-terminal domain Cthe_0975 PF01098 Cell cycle protein Cthe_0976 PF00953 Glycosyl transferase family 4 Cthe_0977 PF01225 Mur ligase family, catalytic domain Cthe_0977 PF02875 Mur ligase family, glutamate ligase domain Cthe_0977 PF08245 Mur ligase middle domain Cthe_0978 PF01225 Mur ligase family, catalytic domain Cthe_0978 PF02875 Mur ligase family, glutamate ligase domain Cthe_0978 PF08245 Mur ligase middle domain Cthe_0979 PF03793 PASTA domain Cthe_0979 PF03717 Penicillin-binding Protein dimerisation domain Cthe_0979 PF00905 Penicillin binding protein transpeptidase domain Cthe_0981 PF01795 MraW methylase family Cthe_0982 PF02381 MraZ protein, putative antitoxin-like Cthe_0983 PF01098 Cell cycle protein Cthe_0984 PF01790 Prolipoprotein diacylglyceryl transferase Cthe_0985 PF00675 Insulinase (Peptidase family M16) Cthe_0985 PF05193 Peptidase M16 inactive domain Cthe_0986 PF05193 Peptidase M16 inactive domain Cthe_0987 PF06574 FAD synthetase Cthe_0987 PF01687 Riboflavin kinase Cthe_0988 PF01509 TruB family pseudouridylate synthase (N terminal domain) Cthe_0988 PF16198 tRNA pseudouridylate synthase B C-terminal domain Cthe_0989 PF01368 DHH family Cthe_0989 PF02272 DHHA1 domain Cthe_0990 PF02033 Ribosome-binding factor A Cthe_0991 PF00009 Elongation factor Tu GTP binding domain Cthe_0991 PF11987 Translation-initiation factor 2 Cthe_0991 PF04760 Translation initiation factor IF-2, N-terminal region Cthe_0992 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Cthe_0993 PF04296 Protein of unknown function (DUF448) Cthe_0994 PF08529 NusA N-terminal domain Cthe_0994 PF00575 S1 RNA binding domain Cthe_0994 PF13184 NusA-like KH domain Cthe_0995 PF02576 RimP N-terminal domain Cthe_0995 PF17384 RimP C-terminal SH3 domain Cthe_0996 PF11490 DNA polymerase III polC-type N-terminus II Cthe_0996 PF07733 Bacterial DNA polymerase III alpha NTPase domain Cthe_0996 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Cthe_0996 PF14579 Helix-hairpin-helix motif Cthe_0996 PF02811 PHP domain Cthe_0996 PF00929 Exonuclease Cthe_0996 PF01336 OB-fold nucleic acid binding domain Cthe_0997 PF04551 GcpE protein Cthe_0998 PF13180 PDZ domain Cthe_0998 PF02163 Peptidase family M50 Cthe_0999 PF13288 DXP reductoisomerase C-terminal domain Cthe_0999 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Cthe_0999 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Cthe_1001 PF01255 Putative undecaprenyl diphosphate synthase Cthe_1003 PF01765 Ribosome recycling factor Cthe_1004 PF00696 Amino acid kinase family Cthe_1005 PF00889 Elongation factor TS Cthe_1006 PF00318 Ribosomal protein S2 Cthe_1007 PF00009 Elongation factor Tu GTP binding domain Cthe_1007 PF03144 Elongation factor Tu domain 2 Cthe_1007 PF00679 Elongation factor G C-terminus Cthe_1007 PF14492 Elongation Factor G, domain II Cthe_1008 PF02618 YceG-like family Cthe_1009 PF01596 O-methyltransferase Cthe_1010 PF16325 Peptidase family U32 C-terminal domain Cthe_1010 PF01136 Peptidase family U32 Cthe_1011 PF03717 Penicillin-binding Protein dimerisation domain Cthe_1011 PF00905 Penicillin binding protein transpeptidase domain Cthe_1012 PF04542 Sigma-70 region 2 Cthe_1012 PF04545 Sigma-70, region 4 Cthe_1013 PF01594 AI-2E family transporter Cthe_1014 PF01713 Smr domain Cthe_1014 PF00488 MutS domain V Cthe_1016 PF01520 N-acetylmuramoyl-L-alanine amidase Cthe_1016 PF04122 Putative cell wall binding repeat 2 Cthe_1018 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_1019 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_1020 PF01547 Bacterial extracellular solute-binding protein Cthe_1021 PF09547 Stage IV sporulation protein A (spore_IV_A) Cthe_1022 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Cthe_1022 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Cthe_1023 PF02660 Glycerol-3-phosphate acyltransferase Cthe_1024 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Cthe_1024 PF01926 50S ribosome-binding GTPase Cthe_1026 PF01783 Ribosomal L32p protein family Cthe_1028 PF00871 Acetokinase family Cthe_1029 PF01515 Phosphate acetyl/butaryl transferase Cthe_1031 PF02934 GatB/GatE catalytic domain Cthe_1031 PF02637 GatB domain Cthe_1032 PF01425 Amidase Cthe_1033 PF02686 Glu-tRNAGln amidotransferase C subunit Cthe_1035 PF00533 BRCA1 C Terminus (BRCT) domain Cthe_1035 PF12826 Helix-hairpin-helix motif Cthe_1035 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Cthe_1035 PF03120 NAD-dependent DNA ligase OB-fold domain Cthe_1035 PF01653 NAD-dependent DNA ligase adenylation domain Cthe_1037 PF11741 AMIN domain Cthe_1037 PF01520 N-acetylmuramoyl-L-alanine amidase Cthe_1038 PF03418 Germination protease Cthe_1039 PF01649 Ribosomal protein S20 Cthe_1040 PF06144 DNA polymerase III, delta subunit Cthe_1041 PF08245 Mur ligase middle domain Cthe_1048 PF01694 Rhomboid family Cthe_1049 PF02631 RecX family Cthe_1050 PF00154 recA bacterial DNA recombination protein Cthe_1051 PF03023 Lipid II flippase MurJ Cthe_1052 PF18146 Damage-inducible protein CinA KH domain Cthe_1052 PF00994 Probable molybdopterin binding domain Cthe_1052 PF02464 Competence-damaged protein Cthe_1053 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Cthe_1053 PF00056 lactate/malate dehydrogenase, NAD binding domain Cthe_1054 PF07726 ATPase family associated with various cellular activities (AAA) Cthe_1054 PF17863 AAA lid domain Cthe_1056 PF11992 Domain of unknown function (DUF3488) Cthe_1056 PF13559 Domain of unknown function (DUF4129) Cthe_1056 PF01841 Transglutaminase-like superfamily Cthe_1057 PF04024 PspC domain Cthe_1058 PF00464 Serine hydroxymethyltransferase Cthe_1062 PF04294 VanW like protein Cthe_1063 PF02568 Thiamine biosynthesis protein (ThiI) Cthe_1063 PF02926 THUMP domain Cthe_1064 PF00266 Aminotransferase class-V Cthe_1066 PF11967 Recombination protein O N terminal Cthe_1066 PF02565 Recombination protein O C terminal Cthe_1067 PF01926 50S ribosome-binding GTPase Cthe_1067 PF07650 KH domain Cthe_1068 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Cthe_1069 PF02130 Uncharacterized protein family UPF0054 Cthe_1070 PF01966 HD domain Cthe_1070 PF07697 7TM-HD extracellular Cthe_1070 PF07698 7TM receptor with intracellular HD hydrolase Cthe_1071 PF02562 PhoH-like protein Cthe_1073 PF07873 YabP family Cthe_1074 PF01522 Polysaccharide deacetylase Cthe_1075 PF05949 Bacterial protein of unknown function (DUF881) Cthe_1079 PF00483 Nucleotidyl transferase Cthe_1083 PF01636 Phosphotransferase enzyme family Cthe_1085 PF13439 Glycosyltransferase Family 4 Cthe_1085 PF00534 Glycosyl transferases group 1 Cthe_1086 PF16363 GDP-mannose 4,6 dehydratase Cthe_1089 PF04232 Stage V sporulation protein S (SpoVS) Cthe_1090 PF13277 YmdB-like protein Cthe_1091 PF01966 HD domain Cthe_1091 PF00013 KH domain Cthe_1091 PF12072 Domain of unknown function (DUF3552) Cthe_1093 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Cthe_1093 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Cthe_1094 PF11842 Domain of unknown function (DUF3362) Cthe_1094 PF08497 Radical SAM N-terminal Cthe_1094 PF04055 Radical SAM superfamily Cthe_1095 PF01580 FtsK/SpoIIIE family Cthe_1095 PF17854 FtsK alpha domain Cthe_1095 PF09397 Ftsk gamma domain Cthe_1097 PF00574 Clp protease Cthe_1104 PF00114 Pilin (bacterial filament) Cthe_1104 PF07963 Prokaryotic N-terminal methylation motif Cthe_1105 PF00482 Type II secretion system (T2SS), protein F Cthe_1106 PF00437 Type II/IV secretion system protein Cthe_1107 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Cthe_1107 PF00437 Type II/IV secretion system protein Cthe_1110 PF01451 Low molecular weight phosphotyrosine protein phosphatase Cthe_1111 PF01758 Sodium Bile acid symporter family Cthe_1112 PF01022 Bacterial regulatory protein, arsR family Cthe_1113 PF01043 SecA preprotein cross-linking domain Cthe_1113 PF07517 SecA DEAD-like domain Cthe_1113 PF07516 SecA Wing and Scaffold domain Cthe_1113 PF02810 SEC-C motif Cthe_1113 PF00271 Helicase conserved C-terminal domain Cthe_1115 PF11426 Tn7 transposition regulator TnsC Cthe_1115 PF13401 AAA domain Cthe_1116 PF00665 Integrase core domain Cthe_1117 PF08722 TnsA endonuclease N terminal Cthe_1117 PF08721 TnsA endonuclease C terminal Cthe_1124 PF02567 Phenazine biosynthesis-like protein Cthe_1127 PF02899 Phage integrase, N-terminal SAM-like domain Cthe_1127 PF00589 Phage integrase family Cthe_1136 PF00069 Protein kinase domain Cthe_1136 PF03793 PASTA domain Cthe_1153 PF05230 MASE2 domain Cthe_1153 PF00990 Diguanylate cyclase, GGDEF domain Cthe_1161 PF13476 AAA domain Cthe_1162 PF01380 SIS domain Cthe_1163 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Cthe_1163 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Cthe_1163 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Cthe_1163 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Cthe_1166 PF02457 DisA bacterial checkpoint controller nucleotide-binding Cthe_1168 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Cthe_1168 PF01871 AMMECR1 Cthe_1170 PF05173 Dihydrodipicolinate reductase, C-terminus Cthe_1170 PF01113 Dihydrodipicolinate reductase, N-terminus Cthe_1176 PF13690 Chemotaxis phosphatase CheX Cthe_1177 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Cthe_1177 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Cthe_1177 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Cthe_1179 PF08141 Small acid-soluble spore protein H family Cthe_1181 PF01841 Transglutaminase-like superfamily Cthe_1181 PF13559 Domain of unknown function (DUF4129) Cthe_1181 PF11992 Domain of unknown function (DUF3488) Cthe_1183 PF07726 ATPase family associated with various cellular activities (AAA) Cthe_1183 PF17863 AAA lid domain Cthe_1186 PF07859 alpha/beta hydrolase fold Cthe_1189 PF00005 ABC transporter Cthe_1191 PF13419 Haloacid dehalogenase-like hydrolase Cthe_1193 PF00872 Transposase, Mutator family Cthe_1199 PF01979 Amidohydrolase family Cthe_1200 PF05221 S-adenosyl-L-homocysteine hydrolase Cthe_1200 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Cthe_1201 PF01048 Phosphorylase superfamily Cthe_1203 PF04293 SpoVR like protein Cthe_1204 PF04285 Protein of unknown function (DUF444) Cthe_1205 PF08298 PrkA AAA domain Cthe_1205 PF06798 PrkA serine protein kinase C-terminal domain Cthe_1206 PF13936 Helix-turn-helix domain Cthe_1211 PF00291 Pyridoxal-phosphate dependent enzyme Cthe_1214 PF01925 Sulfite exporter TauE/SafE Cthe_1215 PF01925 Sulfite exporter TauE/SafE Cthe_1216 PF02617 ATP-dependent Clp protease adaptor protein ClpS Cthe_1217 PF10431 C-terminal, D2-small domain, of ClpB protein Cthe_1217 PF02861 Clp amino terminal domain, pathogenicity island component Cthe_1217 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_1217 PF07724 AAA domain (Cdc48 subfamily) Cthe_1217 PF17871 AAA lid domain Cthe_1218 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Cthe_1221 PF10091 Putative glucoamylase Cthe_1221 PF06165 Glycosyltransferase family 36 Cthe_1221 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Cthe_1222 PF08032 RNA 2'-O ribose methyltransferase substrate binding Cthe_1222 PF00588 SpoU rRNA Methylase family Cthe_1223 PF00453 Ribosomal protein L20 Cthe_1224 PF01632 Ribosomal protein L35 Cthe_1225 PF05198 Translation initiation factor IF-3, N-terminal domain Cthe_1225 PF00707 Translation initiation factor IF-3, C-terminal domain Cthe_1226 PF00186 Dihydrofolate reductase Cthe_1227 PF00303 Thymidylate synthase Cthe_1228 PF02824 TGS domain Cthe_1228 PF03129 Anticodon binding domain Cthe_1228 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Cthe_1228 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Cthe_1230 PF10531 SLBB domain Cthe_1231 PF07943 Penicillin-binding protein 5, C-terminal domain Cthe_1231 PF00768 D-alanyl-D-alanine carboxypeptidase Cthe_1232 PF00501 AMP-binding enzyme Cthe_1234 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_1234 PF00672 HAMP domain Cthe_1234 PF12729 Four helix bundle sensory module for signal transduction Cthe_1235 PF00704 Glycosyl hydrolases family 18 Cthe_1235 PF00041 Fibronectin type III domain Cthe_1236 PF00704 Glycosyl hydrolases family 18 Cthe_1236 PF00041 Fibronectin type III domain Cthe_1237 PF13603 Leucyl-tRNA synthetase, Domain 2 Cthe_1237 PF09334 tRNA synthetases class I (M) Cthe_1237 PF00133 tRNA synthetases class I (I, L, M and V) Cthe_1237 PF08264 Anticodon-binding domain of tRNA Cthe_1240 PF01966 HD domain Cthe_1241 PF01467 Cytidylyltransferase-like Cthe_1242 PF13936 Helix-turn-helix domain Cthe_1244 PF00535 Glycosyl transferase family 2 Cthe_1245 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Cthe_1245 PF02843 Phosphoribosylglycinamide synthetase, C domain Cthe_1245 PF02844 Phosphoribosylglycinamide synthetase, N domain Cthe_1246 PF01808 AICARFT/IMPCHase bienzyme Cthe_1246 PF02142 MGS-like domain Cthe_1247 PF00551 Formyl transferase Cthe_1248 PF00586 AIR synthase related protein, N-terminal domain Cthe_1248 PF02769 AIR synthase related protein, C-terminal domain Cthe_1249 PF00156 Phosphoribosyl transferase domain Cthe_1250 PF00731 AIR carboxylase Cthe_1251 PF00860 Permease family Cthe_1256 PF01915 Glycosyl hydrolase family 3 C-terminal domain Cthe_1256 PF14310 Fibronectin type III-like domain Cthe_1256 PF00933 Glycosyl hydrolase family 3 N terminal domain Cthe_1259 PF01066 CDP-alcohol phosphatidyltransferase Cthe_1261 PF00365 Phosphofructokinase Cthe_1263 PF02081 Tryptophan RNA-binding attenuator protein Cthe_1264 PF07733 Bacterial DNA polymerase III alpha NTPase domain Cthe_1264 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Cthe_1264 PF14579 Helix-hairpin-helix motif Cthe_1264 PF02811 PHP domain Cthe_1264 PF01336 OB-fold nucleic acid binding domain Cthe_1265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Cthe_1265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Cthe_1265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Cthe_1265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Cthe_1266 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_1266 PF00672 HAMP domain Cthe_1266 PF02743 Cache domain Cthe_1267 PF00196 Bacterial regulatory proteins, luxR family Cthe_1267 PF00072 Response regulator receiver domain Cthe_1268 PF07730 Histidine kinase Cthe_1268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1268 PF05384 Sensor protein DegS Cthe_1271 PF03422 Carbohydrate binding module (family 6) Cthe_1271 PF04616 Glycosyl hydrolases family 43 Cthe_1272 PF04542 Sigma-70 region 2 Cthe_1273 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Cthe_1273 PF12791 Anti-sigma factor N-terminus Cthe_1274 PF07670 Nucleoside recognition Cthe_1276 PF01467 Cytidylyltransferase-like Cthe_1278 PF17191 RecG wedge domain Cthe_1278 PF00270 DEAD/DEAH box helicase Cthe_1278 PF00271 Helicase conserved C-terminal domain Cthe_1279 PF00830 Ribosomal L28 family Cthe_1280 PF04226 Transglycosylase associated protein Cthe_1282 PF00990 Diguanylate cyclase, GGDEF domain Cthe_1283 PF00633 Helix-hairpin-helix motif Cthe_1283 PF00730 HhH-GPD superfamily base excision DNA repair protein Cthe_1284 PF00534 Glycosyl transferases group 1 Cthe_1284 PF08323 Starch synthase catalytic domain Cthe_1285 PF01966 HD domain Cthe_1286 PF13180 PDZ domain Cthe_1287 PF00512 His Kinase A (phospho-acceptor) domain Cthe_1287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1287 PF00672 HAMP domain Cthe_1288 PF00486 Transcriptional regulatory protein, C terminal Cthe_1288 PF00072 Response regulator receiver domain Cthe_1292 PF01676 Metalloenzyme superfamily Cthe_1292 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Cthe_1293 PF00072 Response regulator receiver domain Cthe_1295 PF01812 5-formyltetrahydrofolate cyclo-ligase family Cthe_1297 PF02277 Phosphoribosyltransferase Cthe_1298 PF01386 Ribosomal L25p family Cthe_1298 PF14693 Ribosomal protein TL5, C-terminal domain Cthe_1301 PF05636 HIGH Nucleotidyl Transferase Cthe_1302 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Cthe_1302 PF17770 Ribonuclease J C-terminal domain Cthe_1302 PF00753 Metallo-beta-lactamase superfamily Cthe_1303 PF13439 Glycosyltransferase Family 4 Cthe_1303 PF00534 Glycosyl transferases group 1 Cthe_1304 PF02562 PhoH-like protein Cthe_1304 PF13638 PIN domain Cthe_1305 PF07883 Cupin domain Cthe_1307 PF02018 Carbohydrate binding domain Cthe_1307 PF06452 Carbohydrate family 9 binding domain-like Cthe_1307 PF00395 S-layer homology domain Cthe_1307 PF00331 Glycosyl hydrolase family 10 Cthe_1308 PF00391 PEP-utilising enzyme, mobile domain Cthe_1308 PF02896 PEP-utilising enzyme, TIM barrel domain Cthe_1308 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Cthe_1309 PF04055 Radical SAM superfamily Cthe_1309 PF13186 Iron-sulfur cluster-binding domain Cthe_1311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1311 PF00989 PAS fold Cthe_1311 PF17203 Single cache domain 3 Cthe_1311 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Cthe_1312 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Cthe_1312 PF03129 Anticodon binding domain Cthe_1313 PF04127 DNA / pantothenate metabolism flavoprotein Cthe_1313 PF02441 Flavoprotein Cthe_1314 PF01192 RNA polymerase Rpb6 Cthe_1315 PF00625 Guanylate kinase Cthe_1316 PF04025 Domain of unknown function (DUF370) Cthe_1317 PF08340 Domain of unknown function (DUF1732) Cthe_1317 PF03755 YicC-like family, N-terminal region Cthe_1318 PF00072 Response regulator receiver domain Cthe_1319 PF04452 RNA methyltransferase Cthe_1321 PF00684 DnaJ central domain Cthe_1321 PF00226 DnaJ domain Cthe_1321 PF01556 DnaJ C terminal domain Cthe_1322 PF00012 Hsp70 protein Cthe_1323 PF01025 GrpE Cthe_1324 PF01628 HrcA protein C terminal domain Cthe_1325 PF06969 HemN C-terminal domain Cthe_1325 PF04055 Radical SAM superfamily Cthe_1326 PF00679 Elongation factor G C-terminus Cthe_1326 PF00009 Elongation factor Tu GTP binding domain Cthe_1326 PF03144 Elongation factor Tu domain 2 Cthe_1326 PF06421 GTP-binding protein LepA C-terminus Cthe_1329 PF01869 BadF/BadG/BcrA/BcrD ATPase family Cthe_1330 PF10502 Signal peptidase, peptidase S26 Cthe_1331 PF01336 OB-fold nucleic acid binding domain Cthe_1331 PF00152 tRNA synthetases class II (D, K and N) Cthe_1331 PF02938 GAD domain Cthe_1332 PF03129 Anticodon binding domain Cthe_1332 PF13393 Histidyl-tRNA synthetase Cthe_1339 PF00437 Type II/IV secretion system protein Cthe_1341 PF04055 Radical SAM superfamily Cthe_1342 PF00753 Metallo-beta-lactamase superfamily Cthe_1343 PF02580 D-Tyr-tRNA(Tyr) deacylase Cthe_1344 PF13291 ACT domain Cthe_1344 PF02824 TGS domain Cthe_1344 PF04607 Region found in RelA / SpoT proteins Cthe_1345 PF00156 Phosphoribosyl transferase domain Cthe_1346 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Cthe_1346 PF17768 RecJ OB domain Cthe_1346 PF02272 DHHA1 domain Cthe_1346 PF01368 DHH family Cthe_1348 PF01165 Ribosomal protein S21 Cthe_1349 PF02397 Bacterial sugar transferase Cthe_1350 PF00436 Single-strand binding protein family Cthe_1352 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Cthe_1352 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Cthe_1352 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Cthe_1355 PF00535 Glycosyl transferase family 2 Cthe_1357 PF00534 Glycosyl transferases group 1 Cthe_1361 PF01370 NAD dependent epimerase/dehydratase family Cthe_1363 PF13614 AAA domain Cthe_1366 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Cthe_1368 PF00963 Cohesin domain Cthe_1368 PF00395 S-layer homology domain Cthe_1369 PF01230 HIT domain Cthe_1371 PF05593 RHS Repeat Cthe_1375 PF13840 ACT domain Cthe_1375 PF00696 Amino acid kinase family Cthe_1376 PF00742 Homoserine dehydrogenase Cthe_1376 PF01842 ACT domain Cthe_1376 PF03447 Homoserine dehydrogenase, NAD binding domain Cthe_1378 PF01966 HD domain Cthe_1379 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Cthe_1380 PF00072 Response regulator receiver domain Cthe_1381 PF14821 Threonine synthase N terminus Cthe_1381 PF00291 Pyridoxal-phosphate dependent enzyme Cthe_1382 PF01734 Patatin-like phospholipase Cthe_1384 PF08245 Mur ligase middle domain Cthe_1384 PF02875 Mur ligase family, glutamate ligase domain Cthe_1385 PF07516 SecA Wing and Scaffold domain Cthe_1385 PF02810 SEC-C motif Cthe_1385 PF07517 SecA DEAD-like domain Cthe_1385 PF01043 SecA preprotein cross-linking domain Cthe_1388 PF01371 Trp repressor protein Cthe_1389 PF01743 Poly A polymerase head domain Cthe_1389 PF12627 Probable RNA and SrmB- binding site of polymerase A Cthe_1389 PF13735 tRNA nucleotidyltransferase domain 2 putative Cthe_1390 PF12146 Serine aminopeptidase, S33 Cthe_1391 PF00682 HMGL-like Cthe_1391 PF08502 LeuA allosteric (dimerisation) domain Cthe_1392 PF13936 Helix-turn-helix domain Cthe_1393 PF13426 PAS domain Cthe_1393 PF00512 His Kinase A (phospho-acceptor) domain Cthe_1393 PF00672 HAMP domain Cthe_1393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1394 PF00072 Response regulator receiver domain Cthe_1394 PF00486 Transcriptional regulatory protein, C terminal Cthe_1396 PF13091 PLD-like domain Cthe_1397 PF01501 Glycosyl transferase family 8 Cthe_1397 PF08437 Glycosyl transferase family 8 C-terminal Cthe_1398 PF00404 Dockerin type I domain Cthe_1400 PF07745 Glycosyl hydrolase family 53 Cthe_1402 PF02742 Iron dependent repressor, metal binding and dimerisation domain Cthe_1402 PF01325 Iron dependent repressor, N-terminal DNA binding domain Cthe_1404 PF07670 Nucleoside recognition Cthe_1404 PF02421 Ferrous iron transport protein B Cthe_1404 PF17910 FeoB cytosolic helical domain Cthe_1404 PF07664 Ferrous iron transport protein B C terminus Cthe_1405 PF08757 CotH kinase protein Cthe_1408 PF00486 Transcriptional regulatory protein, C terminal Cthe_1408 PF00072 Response regulator receiver domain Cthe_1409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1409 PF00989 PAS fold Cthe_1409 PF00672 HAMP domain Cthe_1409 PF00512 His Kinase A (phospho-acceptor) domain Cthe_1410 PF16916 Dimerisation domain of Zinc Transporter Cthe_1410 PF01545 Cation efflux family Cthe_1411 PF00290 Tryptophan synthase alpha chain Cthe_1412 PF00291 Pyridoxal-phosphate dependent enzyme Cthe_1415 PF13732 Domain of unknown function (DUF4162) Cthe_1415 PF00005 ABC transporter Cthe_1420 PF02659 Putative manganese efflux pump Cthe_1421 PF01343 Peptidase family S49 Cthe_1422 PF06271 RDD family Cthe_1423 PF01594 AI-2E family transporter Cthe_1425 PF03030 Inorganic H+ pyrophosphatase Cthe_1426 PF03591 AzlC protein Cthe_1428 PF00232 Glycosyl hydrolase family 1 Cthe_1432 PF01797 Transposase IS200 like Cthe_1437 PF11738 Protein of unknown function (DUF3298) Cthe_1437 PF13739 Deacetylase PdaC Cthe_1438 PF04542 Sigma-70 region 2 Cthe_1438 PF08281 Sigma-70, region 4 Cthe_1446 PF13180 PDZ domain Cthe_1451 PF01636 Phosphotransferase enzyme family Cthe_1456 PF00005 ABC transporter Cthe_1457 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_1461 PF00355 Rieske [2Fe-2S] domain Cthe_1461 PF01266 FAD dependent oxidoreductase Cthe_1465 PF00578 AhpC/TSA family Cthe_1469 PF13936 Helix-turn-helix domain Cthe_1470 PF04542 Sigma-70 region 2 Cthe_1470 PF08281 Sigma-70, region 4 Cthe_1472 PF03425 Carbohydrate binding domain (family 11) Cthe_1472 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_1472 PF00404 Dockerin type I domain Cthe_1472 PF02156 Glycosyl hydrolase family 26 Cthe_1473 PF03358 NADPH-dependent FMN reductase Cthe_1475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Cthe_1475 PF02142 MGS-like domain Cthe_1475 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Cthe_1477 PF00692 dUTPase Cthe_1478 PF00440 Bacterial regulatory proteins, tetR family Cthe_1480 PF03176 MMPL family Cthe_1485 PF01613 Flavin reductase like domain Cthe_1485 PF00753 Metallo-beta-lactamase superfamily Cthe_1486 PF00293 NUDIX domain Cthe_1488 PF02743 Cache domain Cthe_1488 PF00672 HAMP domain Cthe_1488 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_1493 PF10400 Virulence activator alpha C-term Cthe_1493 PF03551 Transcriptional regulator PadR-like family Cthe_1494 PF00892 EamA-like transporter family Cthe_1496 PF13936 Helix-turn-helix domain Cthe_1498 PF12729 Four helix bundle sensory module for signal transduction Cthe_1498 PF00672 HAMP domain Cthe_1498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_1499 PF00909 Ammonium Transporter Family Cthe_1500 PF00005 ABC transporter Cthe_1500 PF00664 ABC transporter transmembrane region Cthe_1501 PF00005 ABC transporter Cthe_1501 PF00664 ABC transporter transmembrane region Cthe_1505 PF00395 S-layer homology domain Cthe_1505 PF00963 Cohesin domain Cthe_1508 PF03960 ArsC family Cthe_1511 PF01555 DNA methylase Cthe_1512 PF04556 DpnII restriction endonuclease Cthe_1513 PF02086 D12 class N6 adenine-specific DNA methyltransferase Cthe_1516 PF03193 RsgA GTPase Cthe_1519 PF17785 PUA-like domain Cthe_1519 PF10672 S-adenosylmethionine-dependent methyltransferase Cthe_1525 PF02687 FtsX-like permease family Cthe_1526 PF00005 ABC transporter Cthe_1527 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1528 PF00072 Response regulator receiver domain Cthe_1528 PF00486 Transcriptional regulatory protein, C terminal Cthe_1533 PF00872 Transposase, Mutator family Cthe_1536 PF00005 ABC transporter Cthe_1536 PF13732 Domain of unknown function (DUF4162) Cthe_1538 PF01381 Helix-turn-helix Cthe_1539 PF00120 Glutamine synthetase, catalytic domain Cthe_1539 PF18318 Glutamine synthetase C-terminal domain Cthe_1539 PF12437 Glutamine synthetase type III N terminal Cthe_1540 PF02934 GatB/GatE catalytic domain Cthe_1540 PF02637 GatB domain Cthe_1541 PF01425 Amidase Cthe_1542 PF02686 Glu-tRNAGln amidotransferase C subunit Cthe_1543 PF02938 GAD domain Cthe_1543 PF00152 tRNA synthetases class II (D, K and N) Cthe_1543 PF01336 OB-fold nucleic acid binding domain Cthe_1548 PF00378 Enoyl-CoA hydratase/isomerase Cthe_1549 PF13649 Methyltransferase domain Cthe_1550 PF01548 Transposase Cthe_1550 PF02371 Transposase IS116/IS110/IS902 family Cthe_1554 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Cthe_1554 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Cthe_1555 PF03180 NLPA lipoprotein Cthe_1556 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_1557 PF00005 ABC transporter Cthe_1557 PF09383 NIL domain Cthe_1558 PF02082 Transcriptional regulator Cthe_1559 PF01053 Cys/Met metabolism PLP-dependent enzyme Cthe_1560 PF00291 Pyridoxal-phosphate dependent enzyme Cthe_1563 PF00005 ABC transporter Cthe_1565 PF00148 Nitrogenase component 1 type Oxidoreductase Cthe_1566 PF00148 Nitrogenase component 1 type Oxidoreductase Cthe_1567 PF04055 Radical SAM superfamily Cthe_1567 PF02579 Dinitrogenase iron-molybdenum cofactor Cthe_1568 PF04055 Radical SAM superfamily Cthe_1568 PF02579 Dinitrogenase iron-molybdenum cofactor Cthe_1569 PF01053 Cys/Met metabolism PLP-dependent enzyme Cthe_1571 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_1572 PF00005 ABC transporter Cthe_1573 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Cthe_1575 PF01048 Phosphorylase superfamily Cthe_1576 PF02608 ABC transporter substrate-binding protein PnrA-like Cthe_1577 PF11230 Protein of unknown function (DUF3029) Cthe_1578 PF04055 Radical SAM superfamily Cthe_1579 PF00005 ABC transporter Cthe_1580 PF02653 Branched-chain amino acid transport system / permease component Cthe_1581 PF02653 Branched-chain amino acid transport system / permease component Cthe_1582 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Cthe_1583 PF01791 DeoC/LacD family aldolase Cthe_1584 PF12833 Helix-turn-helix domain Cthe_1584 PF00072 Response regulator receiver domain Cthe_1585 PF06580 Histidine kinase Cthe_1586 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_1587 PF00005 ABC transporter Cthe_1587 PF08402 TOBE domain Cthe_1592 PF02595 Glycerate kinase family Cthe_1593 PF00293 NUDIX domain Cthe_1596 PF01047 MarR family Cthe_1599 PF16736 Single Cache-like Cthe_1599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1599 PF00512 His Kinase A (phospho-acceptor) domain Cthe_1599 PF00989 PAS fold Cthe_1600 PF00072 Response regulator receiver domain Cthe_1600 PF00486 Transcriptional regulatory protein, C terminal Cthe_1601 PF01895 PhoU domain Cthe_1602 PF00005 ABC transporter Cthe_1603 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_1604 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_1605 PF12849 PBP superfamily domain Cthe_1609 PF00239 Resolvase, N terminal domain Cthe_1609 PF02796 Helix-turn-helix domain of resolvase Cthe_1611 PF01510 N-acetylmuramoyl-L-alanine amidase Cthe_1611 PF01476 LysM domain Cthe_1611 PF01471 Putative peptidoglycan binding domain Cthe_1612 PF05105 Bacteriophage holin family Cthe_1629 PF00574 Clp protease Cthe_1630 PF04860 Phage portal protein Cthe_1638 PF01555 DNA methylase Cthe_1639 PF01555 DNA methylase Cthe_1649 PF02498 BRO family, N-terminal domain Cthe_1649 PF10548 P22AR C-terminal domain Cthe_1650 PF01612 3'-5' exonuclease Cthe_1650 PF00476 DNA polymerase family A Cthe_1650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Cthe_1650 PF01367 5'-3' exonuclease, C-terminal SAM fold Cthe_1658 PF02386 Cation transport protein Cthe_1659 PF02254 TrkA-N domain Cthe_1659 PF02080 TrkA-C domain Cthe_1663 PF01042 Endoribonuclease L-PSP Cthe_1664 PF07739 TipAS antibiotic-recognition domain Cthe_1664 PF13411 MerR HTH family regulatory protein Cthe_1665 PF01430 Hsp33 protein Cthe_1668 PF00005 ABC transporter Cthe_1678 PF00132 Bacterial transferase hexapeptide (six repeats) Cthe_1679 PF08003 Protein of unknown function (DUF1698) Cthe_1685 PF00005 ABC transporter Cthe_1685 PF00664 ABC transporter transmembrane region Cthe_1688 PF04055 Radical SAM superfamily Cthe_1688 PF06463 Molybdenum Cofactor Synthesis C Cthe_1690 PF04055 Radical SAM superfamily Cthe_1690 PF13186 Iron-sulfur cluster-binding domain Cthe_1695 PF04055 Radical SAM superfamily Cthe_1695 PF13186 Iron-sulfur cluster-binding domain Cthe_1700 PF02796 Helix-turn-helix domain of resolvase Cthe_1700 PF00239 Resolvase, N terminal domain Cthe_1701 PF00239 Resolvase, N terminal domain Cthe_1701 PF02796 Helix-turn-helix domain of resolvase Cthe_1702 PF08239 Bacterial SH3 domain Cthe_1702 PF01520 N-acetylmuramoyl-L-alanine amidase Cthe_1704 PF05105 Bacteriophage holin family Cthe_1720 PF00574 Clp protease Cthe_1722 PF03796 DnaB-like helicase C terminal domain Cthe_1728 PF00145 C-5 cytosine-specific DNA methylase Cthe_1729 PF01555 DNA methylase Cthe_1740 PF10548 P22AR C-terminal domain Cthe_1740 PF02498 BRO family, N-terminal domain Cthe_1747 PF04480 Protein of unknown function (DUF559) Cthe_1747 PF03852 DNA mismatch endonuclease Vsr Cthe_1749 PF00145 C-5 cytosine-specific DNA methylase Cthe_1751 PF01938 TRAM domain Cthe_1751 PF05958 tRNA (Uracil-5-)-methyltransferase Cthe_1752 PF00005 ABC transporter Cthe_1753 PF01032 FecCD transport family Cthe_1754 PF01497 Periplasmic binding protein Cthe_1757 PF01476 LysM domain Cthe_1757 PF08525 Opacity-associated protein A N-terminal motif Cthe_1757 PF01551 Peptidase family M23 Cthe_1760 PF00905 Penicillin binding protein transpeptidase domain Cthe_1760 PF00912 Transglycosylase Cthe_1761 PF02687 FtsX-like permease family Cthe_1761 PF12704 MacB-like periplasmic core domain Cthe_1763 PF00005 ABC transporter Cthe_1766 PF00696 Amino acid kinase family Cthe_1771 PF02915 Rubrerythrin Cthe_1772 PF02698 DUF218 domain Cthe_1773 PF05362 Lon protease (S16) C-terminal proteolytic domain Cthe_1773 PF13654 AAA domain Cthe_1774 PF00583 Acetyltransferase (GNAT) family Cthe_1775 PF00814 Glycoprotease family Cthe_1776 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Cthe_1777 PF01979 Amidohydrolase family Cthe_1782 PF00380 Ribosomal protein S9/S16 Cthe_1783 PF00572 Ribosomal protein L13 Cthe_1785 PF02457 DisA bacterial checkpoint controller nucleotide-binding Cthe_1785 PF10635 DisA bacterial checkpoint controller linker region Cthe_1786 PF18073 Rubredoxin metal binding domain Cthe_1789 PF07724 AAA domain (Cdc48 subfamily) Cthe_1789 PF17871 AAA lid domain Cthe_1789 PF02861 Clp amino terminal domain, pathogenicity island component Cthe_1789 PF10431 C-terminal, D2-small domain, of ClpB protein Cthe_1789 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_1790 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Cthe_1791 PF02151 UvrB/uvrC motif Cthe_1792 PF05848 CtsR N-terminal HTH domain Cthe_1792 PF17727 CtsR C-terminal dimerization domain Cthe_1794 PF14492 Elongation Factor G, domain II Cthe_1794 PF03764 Elongation factor G, domain IV Cthe_1794 PF00009 Elongation factor Tu GTP binding domain Cthe_1794 PF03144 Elongation factor Tu domain 2 Cthe_1794 PF00679 Elongation factor G C-terminus Cthe_1795 PF00793 DAHP synthetase I family Cthe_1795 PF18152 DAHP synthase ferredoxin-like domain Cthe_1796 PF01842 ACT domain Cthe_1796 PF02153 Prephenate dehydrogenase Cthe_1797 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cthe_1798 PF02629 CoA binding domain Cthe_1798 PF06971 Putative DNA-binding protein N-terminus Cthe_1799 PF16326 ABC transporter C-terminal domain Cthe_1799 PF12848 ABC transporter Cthe_1799 PF00005 ABC transporter Cthe_1800 PF01476 LysM domain Cthe_1800 PF00704 Glycosyl hydrolases family 18 Cthe_1801 PF00005 ABC transporter Cthe_1802 PF02361 Cobalt transport protein Cthe_1803 PF01891 Cobalt uptake substrate-specific transmembrane region Cthe_1803 PF13190 PDGLE domain Cthe_1804 PF01520 N-acetylmuramoyl-L-alanine amidase Cthe_1805 PF00486 Transcriptional regulatory protein, C terminal Cthe_1805 PF00072 Response regulator receiver domain Cthe_1806 PF00404 Dockerin type I domain Cthe_1806 PF00942 Cellulose binding domain Cthe_1806 PF00963 Cohesin domain Cthe_1808 PF01548 Transposase Cthe_1808 PF02371 Transposase IS116/IS110/IS902 family Cthe_1809 PF04542 Sigma-70 region 2 Cthe_1809 PF08281 Sigma-70, region 4 Cthe_1810 PF00905 Penicillin binding protein transpeptidase domain Cthe_1810 PF05569 BlaR1 peptidase M56 Cthe_1811 PF03965 Penicillinase repressor Cthe_1812 PF01774 UreD urease accessory protein Cthe_1813 PF02492 CobW/HypB/UreG, nucleotide-binding domain Cthe_1814 PF01730 UreF Cthe_1815 PF02814 UreE urease accessory protein, N-terminal domain Cthe_1815 PF05194 UreE urease accessory protein, C-terminal domain Cthe_1816 PF01979 Amidohydrolase family Cthe_1816 PF00449 Urease alpha-subunit, N-terminal domain Cthe_1817 PF00699 Urease beta subunit Cthe_1818 PF00547 Urease, gamma subunit Cthe_1819 PF00005 ABC transporter Cthe_1820 PF00005 ABC transporter Cthe_1820 PF12399 Branched-chain amino acid ATP-binding cassette transporter Cthe_1822 PF02653 Branched-chain amino acid transport system / permease component Cthe_1824 PF12833 Helix-turn-helix domain Cthe_1824 PF00072 Response regulator receiver domain Cthe_1825 PF01627 Hpt domain Cthe_1825 PF00512 His Kinase A (phospho-acceptor) domain Cthe_1825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1825 PF00672 HAMP domain Cthe_1825 PF00072 Response regulator receiver domain Cthe_1825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Cthe_1826 PF00360 Phytochrome region Cthe_1826 PF08446 PAS fold Cthe_1826 PF00512 His Kinase A (phospho-acceptor) domain Cthe_1826 PF01590 GAF domain Cthe_1826 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1838 PF02018 Carbohydrate binding domain Cthe_1838 PF00404 Dockerin type I domain Cthe_1838 PF00756 Putative esterase Cthe_1838 PF00331 Glycosyl hydrolase family 10 Cthe_1838 PF02018 Carbohydrate binding domain Cthe_1838 PF00404 Dockerin type I domain Cthe_1838 PF00756 Putative esterase Cthe_1838 PF00331 Glycosyl hydrolase family 10 Cthe_1839 PF04055 Radical SAM superfamily Cthe_1839 PF06968 Biotin and Thiamin Synthesis associated domain Cthe_1840 PF00291 Pyridoxal-phosphate dependent enzyme Cthe_1841 PF02540 NAD synthase Cthe_1842 PF01053 Cys/Met metabolism PLP-dependent enzyme Cthe_1843 PF02082 Transcriptional regulator Cthe_1844 PF02082 Transcriptional regulator Cthe_1845 PF04204 Homoserine O-succinyltransferase Cthe_1846 PF00512 His Kinase A (phospho-acceptor) domain Cthe_1846 PF18698 Histidine kinase sensor domain Cthe_1846 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1846 PF00672 HAMP domain Cthe_1846 PF00989 PAS fold Cthe_1847 PF00486 Transcriptional regulatory protein, C terminal Cthe_1847 PF00072 Response regulator receiver domain Cthe_1848 PF00403 Heavy-metal-associated domain Cthe_1852 PF01430 Hsp33 protein Cthe_1853 PF00313 'Cold-shock' DNA-binding domain Cthe_1854 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Cthe_1857 PF03572 Peptidase family S41 Cthe_1857 PF01471 Putative peptidoglycan binding domain Cthe_1857 PF17820 PDZ domain Cthe_1858 PF01551 Peptidase family M23 Cthe_1858 PF01476 LysM domain Cthe_1859 PF02687 FtsX-like permease family Cthe_1859 PF18075 FtsX extracellular domain Cthe_1860 PF00005 ABC transporter Cthe_1861 PF17853 GGDEF-like domain Cthe_1861 PF05651 Putative sugar diacid recognition Cthe_1861 PF13556 PucR C-terminal helix-turn-helix domain Cthe_1862 PF00005 ABC transporter Cthe_1862 PF17912 MalK OB fold domain Cthe_1862 PF03459 TOBE domain Cthe_1863 PF02774 Semialdehyde dehydrogenase, dimerisation domain Cthe_1863 PF01118 Semialdehyde dehydrogenase, NAD binding domain Cthe_1864 PF00696 Amino acid kinase family Cthe_1866 PF00202 Aminotransferase class-III Cthe_1867 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Cthe_1867 PF00117 Glutamine amidotransferase class-I Cthe_1868 PF02142 MGS-like domain Cthe_1868 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Cthe_1868 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Cthe_1869 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Cthe_1869 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Cthe_1872 PF13401 AAA domain Cthe_1872 PF11426 Tn7 transposition regulator TnsC Cthe_1873 PF00665 Integrase core domain Cthe_1874 PF00872 Transposase, Mutator family Cthe_1876 PF08721 TnsA endonuclease C terminal Cthe_1876 PF08722 TnsA endonuclease N terminal Cthe_1884 PF02371 Transposase IS116/IS110/IS902 family Cthe_1884 PF01548 Transposase Cthe_1889 PF00872 Transposase, Mutator family Cthe_1890 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_1890 PF00404 Dockerin type I domain Cthe_1895 PF03551 Transcriptional regulator PadR-like family Cthe_1896 PF00149 Calcineurin-like phosphoesterase Cthe_1899 PF02557 D-alanyl-D-alanine carboxypeptidase Cthe_1901 PF00872 Transposase, Mutator family Cthe_1903 PF13739 Deacetylase PdaC Cthe_1903 PF11738 Protein of unknown function (DUF3298) Cthe_1903 PF01522 Polysaccharide deacetylase Cthe_1904 PF00550 Phosphopantetheine attachment site Cthe_1904 PF00668 Condensation domain Cthe_1904 PF13193 AMP-binding enzyme C-terminal domain Cthe_1904 PF00501 AMP-binding enzyme Cthe_1907 PF00550 Phosphopantetheine attachment site Cthe_1907 PF08659 KR domain Cthe_1907 PF02801 Beta-ketoacyl synthase, C-terminal domain Cthe_1907 PF14765 Polyketide synthase dehydratase Cthe_1907 PF00109 Beta-ketoacyl synthase, N-terminal domain Cthe_1907 PF16197 Ketoacyl-synthetase C-terminal extension Cthe_1907 PF00668 Condensation domain Cthe_1907 PF13193 AMP-binding enzyme C-terminal domain Cthe_1907 PF00501 AMP-binding enzyme Cthe_1915 PF00512 His Kinase A (phospho-acceptor) domain Cthe_1915 PF16736 Single Cache-like Cthe_1915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_1915 PF00989 PAS fold Cthe_1916 PF00486 Transcriptional regulatory protein, C terminal Cthe_1916 PF00072 Response regulator receiver domain Cthe_1917 PF00690 Cation transporter/ATPase, N-terminus Cthe_1917 PF00689 Cation transporting ATPase, C-terminus Cthe_1918 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Cthe_1918 PF01276 Orn/Lys/Arg decarboxylase, major domain Cthe_1919 PF02308 MgtC family Cthe_1920 PF09551 Stage II sporulation protein R (spore_II_R) Cthe_1921 PF03551 Transcriptional regulator PadR-like family Cthe_1923 PF00117 Glutamine amidotransferase class-I Cthe_1923 PF06418 CTP synthase N-terminus Cthe_1930 PF17820 PDZ domain Cthe_1930 PF01471 Putative peptidoglycan binding domain Cthe_1930 PF03572 Peptidase family S41 Cthe_1931 PF00395 S-layer homology domain Cthe_1931 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_1931 PF03424 Carbohydrate binding domain (family 17/28) Cthe_1935 PF03485 Arginyl tRNA synthetase N terminal domain Cthe_1935 PF05746 DALR anticodon binding domain Cthe_1935 PF00750 tRNA synthetases class I (R) Cthe_1937 PF01177 Asp/Glu/Hydantoin racemase Cthe_1938 PF01820 D-ala D-ala ligase N-terminus Cthe_1938 PF07478 D-ala D-ala ligase C-terminus Cthe_1939 PF00571 CBS domain Cthe_1939 PF01769 Divalent cation transporter Cthe_1939 PF03448 MgtE intracellular N domain Cthe_1943 PF01791 DeoC/LacD family aldolase Cthe_1944 PF04308 Ribonuclease H-like Cthe_1945 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_1946 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_1947 PF00578 AhpC/TSA family Cthe_1948 PF02683 Cytochrome C biogenesis protein transmembrane region Cthe_1953 PF01471 Putative peptidoglycan binding domain Cthe_1953 PF07486 Cell Wall Hydrolase Cthe_1955 PF16921 Tex protein YqgF-like domain Cthe_1955 PF09371 Tex-like protein N-terminal domain Cthe_1955 PF00575 S1 RNA binding domain Cthe_1955 PF17674 HHH domain Cthe_1956 PF00294 pfkB family carbohydrate kinase Cthe_1958 PF03851 UV-endonuclease UvdE Cthe_1959 PF13649 Methyltransferase domain Cthe_1961 PF00483 Nucleotidyl transferase Cthe_1962 PF00849 RNA pseudouridylate synthase Cthe_1963 PF03422 Carbohydrate binding module (family 6) Cthe_1963 PF00404 Dockerin type I domain Cthe_1963 PF00756 Putative esterase Cthe_1963 PF00331 Glycosyl hydrolase family 10 Cthe_1964 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_1964 PF13192 Thioredoxin domain Cthe_1965 PF10417 C-terminal domain of 1-Cys peroxiredoxin Cthe_1965 PF00578 AhpC/TSA family Cthe_1967 PF00308 Bacterial dnaA protein Cthe_1967 PF08299 Bacterial dnaA protein helix-turn-helix Cthe_1967 PF11638 DnaA N-terminal domain Cthe_1968 PF01580 FtsK/SpoIIIE family Cthe_1968 PF12538 DNA transporter Cthe_1991 PF00872 Transposase, Mutator family Cthe_1995 PF00665 Integrase core domain Cthe_1995 PF02796 Helix-turn-helix domain of resolvase Cthe_1996 PF01695 IstB-like ATP binding protein Cthe_1999 PF13936 Helix-turn-helix domain Cthe_2004 PF00665 Integrase core domain Cthe_2004 PF08281 Sigma-70, region 4 Cthe_2005 PF01695 IstB-like ATP binding protein Cthe_2017 PF00872 Transposase, Mutator family Cthe_2031 PF01797 Transposase IS200 like Cthe_2034 PF00069 Protein kinase domain Cthe_2039 PF12705 PD-(D/E)XK nuclease superfamily Cthe_2039 PF00580 UvrD/REP helicase N-terminal domain Cthe_2039 PF13361 UvrD-like helicase C-terminal domain Cthe_2040 PF12705 PD-(D/E)XK nuclease superfamily Cthe_2051 PF03787 RAMP superfamily Cthe_2058 PF01661 Macro domain Cthe_2059 PF04542 Sigma-70 region 2 Cthe_2059 PF08281 Sigma-70, region 4 Cthe_2060 PF00588 SpoU rRNA Methylase family Cthe_2060 PF08032 RNA 2'-O ribose methyltransferase substrate binding Cthe_2061 PF00636 Ribonuclease III domain Cthe_2062 PF03323 Bacillus/Clostridium GerA spore germination protein Cthe_2064 PF05504 Spore germination B3/ GerAC like, C-terminal Cthe_2065 PF09190 DALR domain Cthe_2065 PF01406 tRNA synthetases class I (C) catalytic domain Cthe_2066 PF06426 Serine acetyltransferase, N-terminal Cthe_2066 PF00132 Bacterial transferase hexapeptide (six repeats) Cthe_2073 PF07687 Peptidase dimerisation domain Cthe_2073 PF01546 Peptidase family M20/M25/M40 Cthe_2074 PF04070 Domain of unknown function (DUF378) Cthe_2075 PF01709 Transcriptional regulator Cthe_2076 PF00989 PAS fold Cthe_2076 PF00512 His Kinase A (phospho-acceptor) domain Cthe_2076 PF18698 Histidine kinase sensor domain Cthe_2076 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2076 PF00672 HAMP domain Cthe_2078 PF09186 Domain of unknown function (DUF1949) Cthe_2078 PF01205 Uncharacterized protein family UPF0029 Cthe_2079 PF10502 Signal peptidase, peptidase S26 Cthe_2080 PF00293 NUDIX domain Cthe_2081 PF16360 GTP-binding GTPase Middle Region Cthe_2081 PF13167 GTP-binding GTPase N-terminal Cthe_2081 PF01926 50S ribosome-binding GTPase Cthe_2083 PF00817 impB/mucB/samB family Cthe_2083 PF11799 impB/mucB/samB family C-terminal domain Cthe_2085 PF00692 dUTPase Cthe_2086 PF16325 Peptidase family U32 C-terminal domain Cthe_2086 PF01136 Peptidase family U32 Cthe_2087 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Cthe_2087 PF01676 Metalloenzyme superfamily Cthe_2089 PF00404 Dockerin type I domain Cthe_2089 PF02011 Glycosyl hydrolase family 48 Cthe_2092 PF00398 Ribosomal RNA adenine dimethylase Cthe_2093 PF07501 G5 domain Cthe_2093 PF06725 3D domain Cthe_2093 PF03990 G5-linked-Ubiquitin-like domain Cthe_2095 PF01026 TatD related DNase Cthe_2096 PF09334 tRNA synthetases class I (M) Cthe_2096 PF01588 Putative tRNA binding domain Cthe_2096 PF08264 Anticodon-binding domain of tRNA Cthe_2097 PF10776 Protein of unknown function (DUF2600) Cthe_2098 PF07670 Nucleoside recognition Cthe_2099 PF07670 Nucleoside recognition Cthe_2100 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Cthe_2100 PF18277 AbrB C-terminal domain Cthe_2101 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Cthe_2102 PF05175 Methyltransferase small domain Cthe_2103 PF00037 4Fe-4S binding domain Cthe_2104 PF04468 PSP1 C-terminal conserved region Cthe_2105 PF12169 DNA polymerase III subunits gamma and tau domain III Cthe_2106 PF03885 Protein of unknown function (DUF327) Cthe_2108 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Cthe_2108 PF01276 Orn/Lys/Arg decarboxylase, major domain Cthe_2110 PF00005 ABC transporter Cthe_2112 PF00486 Transcriptional regulatory protein, C terminal Cthe_2112 PF00072 Response regulator receiver domain Cthe_2113 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2114 PF13936 Helix-turn-helix domain Cthe_2115 PF01910 Thiamine-binding protein Cthe_2116 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2117 PF09084 NMT1/THI5 like Cthe_2118 PF00005 ABC transporter Cthe_2119 PF00331 Glycosyl hydrolase family 10 Cthe_2119 PF12791 Anti-sigma factor N-terminus Cthe_2120 PF04542 Sigma-70 region 2 Cthe_2125 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2126 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2127 PF17863 AAA lid domain Cthe_2127 PF07726 ATPase family associated with various cellular activities (AAA) Cthe_2137 PF02018 Carbohydrate binding domain Cthe_2137 PF00404 Dockerin type I domain Cthe_2137 PF00331 Glycosyl hydrolase family 10 Cthe_2137 PF00756 Putative esterase Cthe_2138 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Cthe_2138 PF04616 Glycosyl hydrolases family 43 Cthe_2139 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Cthe_2139 PF04616 Glycosyl hydrolases family 43 Cthe_2141 PF13286 Phosphohydrolase-associated domain Cthe_2141 PF01966 HD domain Cthe_2142 PF02132 RecR protein Cthe_2142 PF13662 Toprim domain Cthe_2143 PF02575 YbaB/EbfC DNA-binding family Cthe_2144 PF12169 DNA polymerase III subunits gamma and tau domain III Cthe_2147 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_2147 PF00942 Cellulose binding domain Cthe_2147 PF00331 Glycosyl hydrolase family 10 Cthe_2153 PF13936 Helix-turn-helix domain Cthe_2155 PF00395 S-layer homology domain Cthe_2155 PF00963 Cohesin domain Cthe_2159 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 Cthe_2162 PF07722 Peptidase C26 Cthe_2163 PF01740 STAS domain Cthe_2164 PF00301 Rubredoxin Cthe_2165 PF06866 Protein of unknown function (DUF1256) Cthe_2169 PF00149 Calcineurin-like phosphoesterase Cthe_2172 PF01197 Ribosomal protein L31 Cthe_2173 PF13936 Helix-turn-helix domain Cthe_2174 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Cthe_2174 PF07498 Rho termination factor, N-terminal domain Cthe_2174 PF07497 Rho termination factor, RNA-binding domain Cthe_2176 PF02517 CPBP intramembrane metalloprotease Cthe_2179 PF00544 Pectate lyase Cthe_2180 PF00654 Voltage gated chloride channel Cthe_2181 PF01171 PP-loop family Cthe_2183 PF00483 Nucleotidyl transferase Cthe_2184 PF03631 Virulence factor BrkB Cthe_2185 PF01084 Ribosomal protein S18 Cthe_2186 PF00436 Single-strand binding protein family Cthe_2187 PF01250 Ribosomal protein S6 Cthe_2188 PF13936 Helix-turn-helix domain Cthe_2189 PF00072 Response regulator receiver domain Cthe_2189 PF00990 Diguanylate cyclase, GGDEF domain Cthe_2190 PF01979 Amidohydrolase family Cthe_2191 PF00128 Alpha amylase, catalytic domain Cthe_2191 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Cthe_2191 PF02806 Alpha amylase, C-terminal all-beta domain Cthe_2193 PF03422 Carbohydrate binding module (family 6) Cthe_2193 PF00756 Putative esterase Cthe_2193 PF00404 Dockerin type I domain Cthe_2193 PF00331 Glycosyl hydrolase family 10 Cthe_2194 PF00756 Putative esterase Cthe_2194 PF00331 Glycosyl hydrolase family 10 Cthe_2194 PF00404 Dockerin type I domain Cthe_2194 PF03422 Carbohydrate binding module (family 6) Cthe_2195 PF00756 Putative esterase Cthe_2195 PF00404 Dockerin type I domain Cthe_2195 PF00331 Glycosyl hydrolase family 10 Cthe_2195 PF03422 Carbohydrate binding module (family 6) Cthe_2196 PF03422 Carbohydrate binding module (family 6) Cthe_2196 PF04616 Glycosyl hydrolases family 43 Cthe_2198 PF00665 Integrase core domain Cthe_2198 PF08281 Sigma-70, region 4 Cthe_2199 PF01695 IstB-like ATP binding protein Cthe_2201 PF00872 Transposase, Mutator family Cthe_2203 PF01227 GTP cyclohydrolase I Cthe_2204 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Cthe_2204 PF02875 Mur ligase family, glutamate ligase domain Cthe_2204 PF08245 Mur ligase middle domain Cthe_2205 PF03575 Peptidase family S51 Cthe_2207 PF01979 Amidohydrolase family Cthe_2208 PF00717 Peptidase S24-like Cthe_2208 PF01726 LexA DNA binding domain Cthe_2209 PF00180 Isocitrate/isopropylmalate dehydrogenase Cthe_2210 PF00694 Aconitase C-terminal domain Cthe_2211 PF00330 Aconitase family (aconitate hydratase) Cthe_2212 PF02311 AraC-like ligand binding domain Cthe_2212 PF12833 Helix-turn-helix domain Cthe_2213 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Cthe_2217 PF02561 Flagellar protein FliS Cthe_2218 PF02465 Flagellar hook-associated protein 2 N-terminus Cthe_2218 PF07196 Flagellin hook IN motif Cthe_2218 PF07195 Flagellar hook-associated protein 2 C-terminus Cthe_2220 PF16363 GDP-mannose 4,6 dehydratase Cthe_2221 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Cthe_2224 PF02911 Formyl transferase, C-terminal domain Cthe_2224 PF00551 Formyl transferase Cthe_2227 PF00550 Phosphopantetheine attachment site Cthe_2229 PF08666 SAF domain Cthe_2229 PF03102 NeuB family Cthe_2230 PF02348 Cytidylyltransferase Cthe_2231 PF08241 Methyltransferase domain Cthe_2232 PF08485 Polysaccharide biosynthesis protein C-terminal Cthe_2232 PF02719 Polysaccharide biosynthesis protein Cthe_2236 PF00700 Bacterial flagellin C-terminal helical region Cthe_2236 PF00669 Bacterial flagellin N-terminal helical region Cthe_2237 PF00700 Bacterial flagellin C-terminal helical region Cthe_2237 PF00669 Bacterial flagellin N-terminal helical region Cthe_2238 PF00171 Aldehyde dehydrogenase family Cthe_2239 PF02599 Global regulator protein family Cthe_2240 PF02623 FliW protein Cthe_2242 PF00700 Bacterial flagellin C-terminal helical region Cthe_2242 PF00669 Bacterial flagellin N-terminal helical region Cthe_2243 PF00460 Flagella basal body rod protein Cthe_2243 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Cthe_2248 PF00156 Phosphoribosyl transferase domain Cthe_2249 PF14490 Helix-hairpin-helix containing domain Cthe_2249 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Cthe_2249 PF13538 UvrD-like helicase C-terminal domain Cthe_2251 PF02773 S-adenosylmethionine synthetase, C-terminal domain Cthe_2251 PF02772 S-adenosylmethionine synthetase, central domain Cthe_2251 PF00438 S-adenosylmethionine synthetase, N-terminal domain Cthe_2253 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_2253 PF17862 AAA+ lid domain Cthe_2253 PF06480 FtsH Extracellular Cthe_2253 PF01434 Peptidase family M41 Cthe_2254 PF00156 Phosphoribosyl transferase domain Cthe_2255 PF01171 PP-loop family Cthe_2255 PF11734 TilS substrate C-terminal domain Cthe_2256 PF03796 DnaB-like helicase C terminal domain Cthe_2256 PF00772 DnaB-like helicase N terminal domain Cthe_2257 PF03948 Ribosomal protein L9, C-terminal domain Cthe_2257 PF01281 Ribosomal protein L9, N-terminal domain Cthe_2258 PF01368 DHH family Cthe_2258 PF02272 DHHA1 domain Cthe_2260 PF01842 ACT domain Cthe_2260 PF00800 Prephenate dehydratase Cthe_2260 PF01817 Chorismate mutase type II Cthe_2262 PF01496 V-type ATPase 116kDa subunit family Cthe_2263 PF00137 ATP synthase subunit C Cthe_2264 PF01991 ATP synthase (E/31 kDa) subunit Cthe_2266 PF01990 ATP synthase (F/14-kDa) subunit Cthe_2267 PF02874 ATP synthase alpha/beta family, beta-barrel domain Cthe_2267 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Cthe_2267 PF16886 ATPsynthase alpha/beta subunit N-term extension Cthe_2268 PF02874 ATP synthase alpha/beta family, beta-barrel domain Cthe_2268 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Cthe_2269 PF01813 ATP synthase subunit D Cthe_2270 PF00005 ABC transporter Cthe_2270 PF12848 ABC transporter Cthe_2276 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_2276 PF17862 AAA+ lid domain Cthe_2276 PF01434 Peptidase family M41 Cthe_2278 PF00497 Bacterial extracellular solute-binding proteins, family 3 Cthe_2279 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2280 PF00005 ABC transporter Cthe_2281 PF01339 CheB methylesterase Cthe_2281 PF00072 Response regulator receiver domain Cthe_2282 PF01739 CheR methyltransferase, SAM binding domain Cthe_2282 PF03705 CheR methyltransferase, all-alpha domain Cthe_2283 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_2284 PF01584 CheW-like domain Cthe_2284 PF07194 P2 response regulator binding domain Cthe_2284 PF01627 Hpt domain Cthe_2284 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2284 PF02895 Signal transducing histidine kinase, homodimeric domain Cthe_2285 PF01584 CheW-like domain Cthe_2286 PF00589 Phage integrase family Cthe_2287 PF12833 Helix-turn-helix domain Cthe_2287 PF06445 GyrI-like small molecule binding domain Cthe_2290 PF00005 ABC transporter Cthe_2294 PF00665 Integrase core domain Cthe_2294 PF08281 Sigma-70, region 4 Cthe_2295 PF01695 IstB-like ATP binding protein Cthe_2296 PF09827 CRISPR associated protein Cas2 Cthe_2297 PF01867 CRISPR associated protein Cas1 Cthe_2299 PF00270 DEAD/DEAH box helicase Cthe_2299 PF18019 HD domain Cthe_2299 PF18395 Cas3 C-terminal domain Cthe_2305 PF02673 Bacitracin resistance protein BacA Cthe_2306 PF01554 MatE Cthe_2309 PF00795 Carbon-nitrogen hydrolase Cthe_2315 PF04480 Protein of unknown function (DUF559) Cthe_2315 PF03852 DNA mismatch endonuclease Vsr Cthe_2319 PF09556 HaeIII restriction endonuclease Cthe_2320 PF00145 C-5 cytosine-specific DNA methylase Cthe_2326 PF02590 Predicted SPOUT methyltransferase Cthe_2327 PF00753 Metallo-beta-lactamase superfamily Cthe_2328 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cthe_2332 PF13426 PAS domain Cthe_2332 PF00512 His Kinase A (phospho-acceptor) domain Cthe_2332 PF00672 HAMP domain Cthe_2332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2333 PF00486 Transcriptional regulatory protein, C terminal Cthe_2333 PF00072 Response regulator receiver domain Cthe_2334 PF02719 Polysaccharide biosynthesis protein Cthe_2335 PF14667 Polysaccharide biosynthesis C-terminal domain Cthe_2336 PF13439 Glycosyltransferase Family 4 Cthe_2336 PF00534 Glycosyl transferases group 1 Cthe_2338 PF00534 Glycosyl transferases group 1 Cthe_2340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Cthe_2340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Cthe_2340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Cthe_2344 PF02397 Bacterial sugar transferase Cthe_2345 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Cthe_2348 PF00963 Cohesin domain Cthe_2348 PF00395 S-layer homology domain Cthe_2349 PF00269 Small, acid-soluble spore proteins, alpha/beta type Cthe_2350 PF07486 Cell Wall Hydrolase Cthe_2352 PF00571 CBS domain Cthe_2354 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Cthe_2354 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Cthe_2355 PF02910 Fumarate reductase flavoprotein C-term Cthe_2355 PF00890 FAD binding domain Cthe_2356 PF02445 Quinolinate synthetase A protein Cthe_2360 PF00759 Glycosyl hydrolase family 9 Cthe_2360 PF00942 Cellulose binding domain Cthe_2361 PF03989 DNA gyrase C-terminal domain, beta-propeller Cthe_2361 PF00521 DNA gyrase/topoisomerase IV, subunit A Cthe_2362 PF17762 HTH domain found in ParB protein Cthe_2362 PF02195 ParB-like nuclease domain Cthe_2363 PF02527 rRNA small subunit methyltransferase G Cthe_2364 PF13932 GidA associated domain Cthe_2364 PF01134 Glucose inhibited division protein A Cthe_2365 PF01926 50S ribosome-binding GTPase Cthe_2365 PF12631 MnmE helical domain Cthe_2365 PF10396 GTP-binding protein TrmE N-terminus Cthe_2366 PF14804 Jag N-terminus Cthe_2366 PF01424 R3H domain Cthe_2367 PF02096 60Kd inner membrane protein Cthe_2368 PF01809 Putative membrane protein insertion efficiency factor Cthe_2369 PF00825 Ribonuclease P Cthe_2370 PF00468 Ribosomal protein L34 Cthe_2371 PF11638 DnaA N-terminal domain Cthe_2371 PF00308 Bacterial dnaA protein Cthe_2371 PF08299 Bacterial dnaA protein helix-turn-helix Cthe_2372 PF00712 DNA polymerase III beta subunit, N-terminal domain Cthe_2372 PF02767 DNA polymerase III beta subunit, central domain Cthe_2372 PF02768 DNA polymerase III beta subunit, C-terminal domain Cthe_2374 PF02463 RecF/RecN/SMC N terminal domain Cthe_2376 PF00986 DNA gyrase B subunit, carboxyl terminus Cthe_2376 PF00204 DNA gyrase B Cthe_2376 PF01751 Toprim domain Cthe_2376 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2377 PF13614 AAA domain Cthe_2378 PF17762 HTH domain found in ParB protein Cthe_2378 PF02195 ParB-like nuclease domain Cthe_2381 PF02403 Seryl-tRNA synthetase N-terminal domain Cthe_2381 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Cthe_2382 PF07690 Major Facilitator Superfamily Cthe_2384 PF00395 S-layer homology domain Cthe_2386 PF04294 VanW like protein Cthe_2387 PF00246 Zinc carboxypeptidase Cthe_2387 PF01476 LysM domain Cthe_2390 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Cthe_2391 PF00037 4Fe-4S binding domain Cthe_2392 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Cthe_2392 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Cthe_2393 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cthe_2399 PF01268 Formate--tetrahydrofolate ligase Cthe_2400 PF05582 YabG peptidase U57 Cthe_2403 PF00288 GHMP kinases N terminal domain Cthe_2403 PF08544 GHMP kinases C terminal Cthe_2404 PF07729 FCD domain Cthe_2404 PF00392 Bacterial regulatory proteins, gntR family Cthe_2405 PF00403 Heavy-metal-associated domain Cthe_2407 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_2407 PF17862 AAA+ lid domain Cthe_2407 PF01434 Peptidase family M41 Cthe_2412 PF13514 AAA domain Cthe_2413 PF00877 NlpC/P60 family Cthe_2414 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Cthe_2415 PF07486 Cell Wall Hydrolase Cthe_2415 PF01471 Putative peptidoglycan binding domain Cthe_2416 PF14620 YpeB sporulation Cthe_2418 PF00308 Bacterial dnaA protein Cthe_2418 PF08299 Bacterial dnaA protein helix-turn-helix Cthe_2418 PF11638 DnaA N-terminal domain Cthe_2420 PF01966 HD domain Cthe_2423 PF03442 Carbohydrate binding domain X2 Cthe_2423 PF00963 Cohesin domain Cthe_2423 PF00942 Cellulose binding domain Cthe_2425 PF01618 MotA/TolQ/ExbB proton channel family Cthe_2426 PF13677 Membrane MotB of proton-channel complex MotA/MotB Cthe_2426 PF00691 OmpA family Cthe_2427 PF07136 Protein of unknown function (DUF1385) Cthe_2428 PF17827 PrmC N-terminal domain Cthe_2428 PF05175 Methyltransferase small domain Cthe_2430 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Cthe_2430 PF10531 SLBB domain Cthe_2430 PF13375 RnfC Barrel sandwich hybrid domain Cthe_2430 PF13237 4Fe-4S dicluster domain Cthe_2431 PF03116 NQR2, RnfD, RnfE family Cthe_2432 PF04205 FMN-binding domain Cthe_2433 PF02508 Rnf-Nqr subunit, membrane protein Cthe_2434 PF02508 Rnf-Nqr subunit, membrane protein Cthe_2435 PF04060 Putative Fe-S cluster Cthe_2437 PF01202 Shikimate kinase Cthe_2441 PF08220 DeoR-like helix-turn-helix domain Cthe_2441 PF00455 DeoR C terminal sensor domain Cthe_2442 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Cthe_2442 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Cthe_2443 PF00456 Transketolase, thiamine diphosphate binding domain Cthe_2444 PF02779 Transketolase, pyrimidine binding domain Cthe_2444 PF02780 Transketolase, C-terminal domain Cthe_2445 PF08240 Alcohol dehydrogenase GroES-like domain Cthe_2445 PF00107 Zinc-binding dehydrogenase Cthe_2446 PF13407 Periplasmic binding protein domain Cthe_2447 PF00005 ABC transporter Cthe_2448 PF02653 Branched-chain amino acid transport system / permease component Cthe_2449 PF00300 Histidine phosphatase superfamily (branch 1) Cthe_2451 PF00271 Helicase conserved C-terminal domain Cthe_2451 PF04434 SWIM zinc finger Cthe_2451 PF00176 SNF2 family N-terminal domain Cthe_2452 PF01432 Peptidase family M3 Cthe_2452 PF08439 Oligopeptidase F Cthe_2454 PF00331 Glycosyl hydrolase family 10 Cthe_2454 PF00395 S-layer homology domain Cthe_2454 PF06452 Carbohydrate family 9 binding domain-like Cthe_2454 PF02018 Carbohydrate binding domain Cthe_2455 PF00589 Phage integrase family Cthe_2455 PF14659 Phage integrase, N-terminal SAM-like domain Cthe_2460 PF01381 Helix-turn-helix Cthe_2461 PF01381 Helix-turn-helix Cthe_2461 PF00145 C-5 cytosine-specific DNA methylase Cthe_2462 PF02498 BRO family, N-terminal domain Cthe_2462 PF10548 P22AR C-terminal domain Cthe_2467 PF01695 IstB-like ATP binding protein Cthe_2470 PF02086 D12 class N6 adenine-specific DNA methyltransferase Cthe_2474 PF17288 Terminase RNAseH like domain Cthe_2474 PF04466 Phage terminase large subunit Cthe_2484 PF01548 Transposase Cthe_2484 PF02371 Transposase IS116/IS110/IS902 family Cthe_2485 PF17482 Phage tail sheath C-terminal domain Cthe_2485 PF17481 Phage tail sheath protein beta-sandwich domain Cthe_2485 PF04984 Phage tail sheath protein subtilisin-like domain Cthe_2489 PF01476 LysM domain Cthe_2489 PF04972 BON domain Cthe_2492 PF04865 Baseplate J-like protein Cthe_2498 PF01510 N-acetylmuramoyl-L-alanine amidase Cthe_2498 PF01471 Putative peptidoglycan binding domain Cthe_2502 PF14437 MafB19-like deaminase Cthe_2503 PF07883 Cupin domain Cthe_2504 PF06725 3D domain Cthe_2505 PF00356 Bacterial regulatory proteins, lacI family Cthe_2506 PF02011 Glycosyl hydrolase family 48 Cthe_2506 PF00942 Cellulose binding domain Cthe_2506 PF03442 Carbohydrate binding domain X2 Cthe_2507 PF05582 YabG peptidase U57 Cthe_2511 PF00924 Mechanosensitive ion channel Cthe_2513 PF13180 PDZ domain Cthe_2515 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Cthe_2516 PF00205 Thiamine pyrophosphate enzyme, central domain Cthe_2516 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cthe_2516 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Cthe_2517 PF10369 Small subunit of acetolactate synthase Cthe_2518 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Cthe_2518 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Cthe_2519 PF08502 LeuA allosteric (dimerisation) domain Cthe_2519 PF00682 HMGL-like Cthe_2521 PF04542 Sigma-70 region 2 Cthe_2522 PF12791 Anti-sigma factor N-terminus Cthe_2524 PF02082 Transcriptional regulator Cthe_2525 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Cthe_2525 PF01488 Shikimate / quinate 5-dehydrogenase Cthe_2526 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Cthe_2526 PF01488 Shikimate / quinate 5-dehydrogenase Cthe_2527 PF03900 Porphobilinogen deaminase, C-terminal domain Cthe_2527 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Cthe_2528 PF02602 Uroporphyrinogen-III synthase HemD Cthe_2528 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Cthe_2529 PF00490 Delta-aminolevulinic acid dehydratase Cthe_2530 PF00202 Aminotransferase class-III Cthe_2532 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2533 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2534 PF17850 CysA C-terminal regulatory domain Cthe_2534 PF00005 ABC transporter Cthe_2534 PF12857 TOBE-like domain Cthe_2535 PF01507 Phosphoadenosine phosphosulfate reductase family Cthe_2536 PF01507 Phosphoadenosine phosphosulfate reductase family Cthe_2537 PF00009 Elongation factor Tu GTP binding domain Cthe_2539 PF00899 ThiF family Cthe_2541 PF13187 4Fe-4S dicluster domain Cthe_2541 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Cthe_2541 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Cthe_2544 PF08281 Sigma-70, region 4 Cthe_2544 PF04542 Sigma-70 region 2 Cthe_2548 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Cthe_2549 PF00404 Dockerin type I domain Cthe_2549 PF02011 Glycosyl hydrolase family 48 Cthe_2551 PF06463 Molybdenum Cofactor Synthesis C Cthe_2551 PF04055 Radical SAM superfamily Cthe_2552 PF04055 Radical SAM superfamily Cthe_2552 PF06463 Molybdenum Cofactor Synthesis C Cthe_2553 PF04055 Radical SAM superfamily Cthe_2553 PF06463 Molybdenum Cofactor Synthesis C Cthe_2556 PF04055 Radical SAM superfamily Cthe_2556 PF06463 Molybdenum Cofactor Synthesis C Cthe_2557 PF00535 Glycosyl transferase family 2 Cthe_2558 PF16363 GDP-mannose 4,6 dehydratase Cthe_2559 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Cthe_2560 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Cthe_2561 PF16363 GDP-mannose 4,6 dehydratase Cthe_2562 PF00483 Nucleotidyl transferase Cthe_2566 PF04055 Radical SAM superfamily Cthe_2566 PF02310 B12 binding domain Cthe_2573 PF00005 ABC transporter Cthe_2574 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2577 PF01928 CYTH domain Cthe_2578 PF02541 Ppx/GppA phosphatase family Cthe_2579 PF00465 Iron-containing alcohol dehydrogenase Cthe_2581 PF00809 Pterin binding enzyme Cthe_2582 PF02152 Dihydroneopterin aldolase Cthe_2583 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Cthe_2585 PF02237 Biotin protein ligase C terminal domain Cthe_2585 PF08279 HTH domain Cthe_2585 PF03099 Biotin/lipoate A/B protein ligase family Cthe_2588 PF03309 Type III pantothenate kinase Cthe_2590 PF12791 Anti-sigma factor N-terminus Cthe_2590 PF00331 Glycosyl hydrolase family 10 Cthe_2593 PF03462 PCRF domain Cthe_2593 PF00472 RF-1 domain Cthe_2594 PF02535 ZIP Zinc transporter Cthe_2595 PF03481 Putative GTP-binding controlling metal-binding Cthe_2595 PF01300 Telomere recombination Cthe_2596 PF01451 Low molecular weight phosphotyrosine protein phosphatase Cthe_2597 PF02502 Ribose/Galactose Isomerase Cthe_2599 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Cthe_2600 PF00953 Glycosyl transferase family 4 Cthe_2601 PF02350 UDP-N-acetylglucosamine 2-epimerase Cthe_2602 PF00119 ATP synthase A chain Cthe_2603 PF00137 ATP synthase subunit C Cthe_2604 PF00430 ATP synthase B/B' CF(0) Cthe_2605 PF00213 ATP synthase delta (OSCP) subunit Cthe_2606 PF02874 ATP synthase alpha/beta family, beta-barrel domain Cthe_2606 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Cthe_2606 PF00306 ATP synthase alpha/beta chain, C terminal domain Cthe_2607 PF00231 ATP synthase Cthe_2608 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Cthe_2608 PF02874 ATP synthase alpha/beta family, beta-barrel domain Cthe_2609 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Cthe_2609 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Cthe_2613 PF00963 Cohesin domain Cthe_2613 PF00395 S-layer homology domain Cthe_2615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cthe_2616 PF08486 Stage II sporulation protein Cthe_2618 PF12116 Stage III sporulation protein D Cthe_2620 PF00460 Flagella basal body rod protein Cthe_2620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Cthe_2621 PF00460 Flagella basal body rod protein Cthe_2621 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Cthe_2625 PF07977 FabA-like domain Cthe_2626 PF08245 Mur ligase middle domain Cthe_2626 PF01225 Mur ligase family, catalytic domain Cthe_2626 PF02875 Mur ligase family, glutamate ligase domain Cthe_2627 PF00156 Phosphoribosyl transferase domain Cthe_2627 PF09182 Bacterial purine repressor, N-terminal Cthe_2628 PF04026 SpoVG Cthe_2629 PF00132 Bacterial transferase hexapeptide (six repeats) Cthe_2629 PF14602 Hexapeptide repeat of succinyl-transferase Cthe_2629 PF00483 Nucleotidyl transferase Cthe_2630 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Cthe_2630 PF14572 Phosphoribosyl synthetase-associated domain Cthe_2631 PF01195 Peptidyl-tRNA hydrolase Cthe_2632 PF02559 CarD-like/TRCF domain Cthe_2632 PF00270 DEAD/DEAH box helicase Cthe_2632 PF00271 Helicase conserved C-terminal domain Cthe_2632 PF03461 TRCF domain Cthe_2632 PF17757 UvrB interaction domain Cthe_2634 PF02311 AraC-like ligand binding domain Cthe_2634 PF12833 Helix-turn-helix domain Cthe_2635 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Cthe_2635 PF01243 Pyridoxamine 5'-phosphate oxidase Cthe_2636 PF03023 Lipid II flippase MurJ Cthe_2637 PF13477 Glycosyl transferase 4-like Cthe_2637 PF00534 Glycosyl transferases group 1 Cthe_2639 PF02348 Cytidylyltransferase Cthe_2639 PF13472 GDSL-like Lipase/Acylhydrolase family Cthe_2640 PF02350 UDP-N-acetylglucosamine 2-epimerase Cthe_2641 PF03102 NeuB family Cthe_2641 PF08666 SAF domain Cthe_2643 PF00483 Nucleotidyl transferase Cthe_2644 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Cthe_2645 PF01370 NAD dependent epimerase/dehydratase family Cthe_2647 PF01820 D-ala D-ala ligase N-terminus Cthe_2647 PF07478 D-ala D-ala ligase C-terminus Cthe_2648 PF02397 Bacterial sugar transferase Cthe_2650 PF02719 Polysaccharide biosynthesis protein Cthe_2653 PF13614 AAA domain Cthe_2655 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Cthe_2655 PF15714 Stage V sporulation protein T C-terminal, transcription factor Cthe_2656 PF03819 MazG nucleotide pyrophosphohydrolase domain Cthe_2657 PF00216 Bacterial DNA-binding protein Cthe_2658 PF01479 S4 domain Cthe_2662 PF00575 S1 RNA binding domain Cthe_2663 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_2663 PF02743 Cache domain Cthe_2663 PF00672 HAMP domain Cthe_2664 PF03109 ABC1 family Cthe_2666 PF00689 Cation transporting ATPase, C-terminus Cthe_2666 PF00690 Cation transporter/ATPase, N-terminus Cthe_2671 PF00872 Transposase, Mutator family Cthe_2672 PF00872 Transposase, Mutator family Cthe_2677 PF08447 PAS fold Cthe_2677 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2677 PF00989 PAS fold Cthe_2677 PF00512 His Kinase A (phospho-acceptor) domain Cthe_2680 PF00595 PDZ domain Cthe_2680 PF03572 Peptidase family S41 Cthe_2681 PF07228 Stage II sporulation protein E (SpoIIE) Cthe_2685 PF01207 Dihydrouridine synthase (Dus) Cthe_2686 PF02491 SHS2 domain inserted in FTSA Cthe_2687 PF03061 Thioesterase superfamily Cthe_2688 PF14667 Polysaccharide biosynthesis C-terminal domain Cthe_2688 PF01943 Polysaccharide biosynthesis protein Cthe_2689 PF00392 Bacterial regulatory proteins, gntR family Cthe_2689 PF00155 Aminotransferase class I and II Cthe_2691 PF00132 Bacterial transferase hexapeptide (six repeats) Cthe_2696 PF03853 YjeF-related protein N-terminus Cthe_2696 PF01256 Carbohydrate kinase Cthe_2697 PF01168 Alanine racemase, N-terminal domain Cthe_2697 PF00842 Alanine racemase, C-terminal domain Cthe_2698 PF01402 Ribbon-helix-helix protein, copG family Cthe_2699 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Cthe_2701 PF03808 Glycosyl transferase WecB/TagA/CpsF family Cthe_2702 PF00534 Glycosyl transferases group 1 Cthe_2702 PF13579 Glycosyl transferase 4-like domain Cthe_2703 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Cthe_2703 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Cthe_2704 PF00456 Transketolase, thiamine diphosphate binding domain Cthe_2705 PF02779 Transketolase, pyrimidine binding domain Cthe_2705 PF02780 Transketolase, C-terminal domain Cthe_2706 PF00005 ABC transporter Cthe_2713 PF00920 Dehydratase family Cthe_2714 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cthe_2714 PF00205 Thiamine pyrophosphate enzyme, central domain Cthe_2714 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Cthe_2715 PF13936 Helix-turn-helix domain Cthe_2716 PF13936 Helix-turn-helix domain Cthe_2718 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Cthe_2719 PF00467 KOW motif Cthe_2719 PF02357 Transcription termination factor nusG Cthe_2720 PF00298 Ribosomal protein L11, RNA binding domain Cthe_2720 PF03946 Ribosomal protein L11, N-terminal domain Cthe_2721 PF00687 Ribosomal protein L1p/L10e family Cthe_2722 PF00466 Ribosomal protein L10 Cthe_2723 PF00542 Ribosomal protein L7/L12 C-terminal domain Cthe_2723 PF16320 Ribosomal protein L7/L12 dimerisation domain Cthe_2724 PF04563 RNA polymerase beta subunit Cthe_2724 PF04561 RNA polymerase Rpb2, domain 2 Cthe_2724 PF04565 RNA polymerase Rpb2, domain 3 Cthe_2724 PF10385 RNA polymerase beta subunit external 1 domain Cthe_2724 PF00562 RNA polymerase Rpb2, domain 6 Cthe_2724 PF04560 RNA polymerase Rpb2, domain 7 Cthe_2725 PF04998 RNA polymerase Rpb1, domain 5 Cthe_2725 PF05000 RNA polymerase Rpb1, domain 4 Cthe_2725 PF04983 RNA polymerase Rpb1, domain 3 Cthe_2725 PF00623 RNA polymerase Rpb1, domain 2 Cthe_2725 PF04997 RNA polymerase Rpb1, domain 1 Cthe_2726 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Cthe_2727 PF00164 Ribosomal protein S12/S23 Cthe_2728 PF00177 Ribosomal protein S7p/S5e Cthe_2729 PF00679 Elongation factor G C-terminus Cthe_2729 PF14492 Elongation Factor G, domain II Cthe_2729 PF03764 Elongation factor G, domain IV Cthe_2729 PF00009 Elongation factor Tu GTP binding domain Cthe_2729 PF03144 Elongation factor Tu domain 2 Cthe_2730 PF00009 Elongation factor Tu GTP binding domain Cthe_2730 PF03143 Elongation factor Tu C-terminal domain Cthe_2730 PF03144 Elongation factor Tu domain 2 Cthe_2731 PF04542 Sigma-70 region 2 Cthe_2731 PF08281 Sigma-70, region 4 Cthe_2734 PF04294 VanW like protein Cthe_2735 PF00381 PTS HPr component phosphorylation site Cthe_2736 PF00391 PEP-utilising enzyme, mobile domain Cthe_2736 PF05524 PEP-utilising enzyme, N-terminal Cthe_2736 PF02896 PEP-utilising enzyme, TIM barrel domain Cthe_2737 PF01541 GIY-YIG catalytic domain Cthe_2737 PF02151 UvrB/uvrC motif Cthe_2737 PF08459 UvrC Helix-hairpin-helix N-terminal Cthe_2739 PF05698 Bacterial trigger factor protein (TF) C-terminus Cthe_2739 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Cthe_2739 PF05697 Bacterial trigger factor protein (TF) Cthe_2740 PF00574 Clp protease Cthe_2741 PF10431 C-terminal, D2-small domain, of ClpB protein Cthe_2741 PF07724 AAA domain (Cdc48 subfamily) Cthe_2741 PF06689 ClpX C4-type zinc finger Cthe_2742 PF05362 Lon protease (S16) C-terminal proteolytic domain Cthe_2742 PF00004 ATPase family associated with various cellular activities (AAA) Cthe_2743 PF00814 Glycoprotease family Cthe_2744 PF01464 Transglycosylase SLT domain Cthe_2747 PF02811 PHP domain Cthe_2748 PF01668 SmpB protein Cthe_2750 PF01695 IstB-like ATP binding protein Cthe_2757 PF02080 TrkA-C domain Cthe_2757 PF00999 Sodium/hydrogen exchanger family Cthe_2757 PF03471 Transporter associated domain Cthe_2759 PF06445 GyrI-like small molecule binding domain Cthe_2759 PF12833 Helix-turn-helix domain Cthe_2760 PF00759 Glycosyl hydrolase family 9 Cthe_2760 PF00942 Cellulose binding domain Cthe_2761 PF00942 Cellulose binding domain Cthe_2761 PF00404 Dockerin type I domain Cthe_2761 PF00759 Glycosyl hydrolase family 9 Cthe_2768 PF00149 Calcineurin-like phosphoesterase Cthe_2769 PF01814 Hemerythrin HHE cation binding domain Cthe_2769 PF04405 Domain of Unknown function (DUF542) Cthe_2770 PF01548 Transposase Cthe_2770 PF02371 Transposase IS116/IS110/IS902 family Cthe_2775 PF00027 Cyclic nucleotide-binding domain Cthe_2775 PF13545 Crp-like helix-turn-helix domain Cthe_2777 PF04973 Nicotinamide mononucleotide transporter Cthe_2778 PF01381 Helix-turn-helix Cthe_2778 PF13521 AAA domain Cthe_2782 PF00395 S-layer homology domain Cthe_2782 PF00963 Cohesin domain Cthe_2784 PF02310 B12 binding domain Cthe_2784 PF02607 B12 binding domain Cthe_2785 PF01208 Uroporphyrinogen decarboxylase (URO-D) Cthe_2786 PF01208 Uroporphyrinogen decarboxylase (URO-D) Cthe_2787 PF00111 2Fe-2S iron-sulfur cluster binding domain Cthe_2787 PF00175 Oxidoreductase NAD-binding domain Cthe_2787 PF00970 Oxidoreductase FAD-binding domain Cthe_2789 PF09084 NMT1/THI5 like Cthe_2790 PF00005 ABC transporter Cthe_2791 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2792 PF14535 AMP-binding enzyme C-terminal domain Cthe_2792 PF00501 AMP-binding enzyme Cthe_2793 PF00155 Aminotransferase class I and II Cthe_2794 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Cthe_2796 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Cthe_2796 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Cthe_2797 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cthe_2798 PF01042 Endoribonuclease L-PSP Cthe_2799 PF01053 Cys/Met metabolism PLP-dependent enzyme Cthe_2800 PF00155 Aminotransferase class I and II Cthe_2801 PF03063 Prismane/CO dehydrogenase family Cthe_2803 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2804 PF00005 ABC transporter Cthe_2807 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_2808 PF00356 Bacterial regulatory proteins, lacI family Cthe_2809 PF00722 Glycosyl hydrolases family 16 Cthe_2810 PF02690 Na+/Pi-cotransporter Cthe_2811 PF02156 Glycosyl hydrolase family 26 Cthe_2812 PF00759 Glycosyl hydrolase family 9 Cthe_2812 PF00942 Cellulose binding domain Cthe_2813 PF00072 Response regulator receiver domain Cthe_2813 PF00486 Transcriptional regulatory protein, C terminal Cthe_2814 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2814 PF00512 His Kinase A (phospho-acceptor) domain Cthe_2815 PF01921 tRNA synthetases class I (K) Cthe_2816 PF00872 Transposase, Mutator family Cthe_2817 PF01584 CheW-like domain Cthe_2818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2818 PF01627 Hpt domain Cthe_2818 PF00072 Response regulator receiver domain Cthe_2818 PF02895 Signal transducing histidine kinase, homodimeric domain Cthe_2818 PF01584 CheW-like domain Cthe_2819 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_2820 PF01739 CheR methyltransferase, SAM binding domain Cthe_2820 PF03705 CheR methyltransferase, all-alpha domain Cthe_2821 PF01339 CheB methylesterase Cthe_2821 PF00072 Response regulator receiver domain Cthe_2822 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Cthe_2822 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Cthe_2829 PF00872 Transposase, Mutator family Cthe_2830 PF01695 IstB-like ATP binding protein Cthe_2831 PF08281 Sigma-70, region 4 Cthe_2831 PF00665 Integrase core domain Cthe_2832 PF00872 Transposase, Mutator family Cthe_2858 PF00872 Transposase, Mutator family Cthe_2870 PF00571 CBS domain Cthe_2870 PF03471 Transporter associated domain Cthe_2870 PF01595 Cyclin M transmembrane N-terminal domain Cthe_2872 PF00150 Cellulase (glycosyl hydrolase family 5) Cthe_2872 PF00404 Dockerin type I domain Cthe_2874 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Cthe_2874 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Cthe_2875 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Cthe_2875 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Cthe_2876 PF00580 UvrD/REP helicase N-terminal domain Cthe_2876 PF13361 UvrD-like helicase C-terminal domain Cthe_2879 PF02018 Carbohydrate binding domain Cthe_2879 PF00756 Putative esterase Cthe_2879 PF00331 Glycosyl hydrolase family 10 Cthe_2879 PF00404 Dockerin type I domain Cthe_2880 PF13393 Histidyl-tRNA synthetase Cthe_2881 PF01634 ATP phosphoribosyltransferase Cthe_2882 PF00815 Histidinol dehydrogenase Cthe_2883 PF00155 Aminotransferase class I and II Cthe_2884 PF00475 Imidazoleglycerol-phosphate dehydratase Cthe_2885 PF01259 SAICAR synthetase Cthe_2886 PF00117 Glutamine amidotransferase class-I Cthe_2887 PF00977 Histidine biosynthesis protein Cthe_2888 PF00977 Histidine biosynthesis protein Cthe_2889 PF01502 Phosphoribosyl-AMP cyclohydrolase Cthe_2889 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Cthe_2891 PF00166 Chaperonin 10 Kd subunit Cthe_2892 PF00118 TCP-1/cpn60 chaperonin family Cthe_2895 PF00704 Glycosyl hydrolases family 18 Cthe_2897 PF01272 Transcription elongation factor, GreA/GreB, C-term Cthe_2897 PF03449 Transcription elongation factor, N-terminal Cthe_2898 PF01740 STAS domain Cthe_2899 PF13581 Histidine kinase-like ATPase domain Cthe_2900 PF04539 Sigma-70 region 3 Cthe_2900 PF04545 Sigma-70, region 4 Cthe_2900 PF04542 Sigma-70 region 2 Cthe_2902 PF00338 Ribosomal protein S10p/S20e Cthe_2903 PF00297 Ribosomal protein L3 Cthe_2904 PF00573 Ribosomal protein L4/L1 family Cthe_2905 PF00276 Ribosomal protein L23 Cthe_2906 PF00181 Ribosomal Proteins L2, RNA binding domain Cthe_2906 PF03947 Ribosomal Proteins L2, C-terminal domain Cthe_2907 PF00203 Ribosomal protein S19 Cthe_2908 PF00237 Ribosomal protein L22p/L17e Cthe_2909 PF07650 KH domain Cthe_2909 PF00189 Ribosomal protein S3, C-terminal domain Cthe_2910 PF00252 Ribosomal protein L16p/L10e Cthe_2911 PF00831 Ribosomal L29 protein Cthe_2912 PF00366 Ribosomal protein S17 Cthe_2913 PF00238 Ribosomal protein L14p/L23e Cthe_2914 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Cthe_2915 PF00281 Ribosomal protein L5 Cthe_2915 PF00673 ribosomal L5P family C-terminus Cthe_2916 PF00253 Ribosomal protein S14p/S29e Cthe_2917 PF00410 Ribosomal protein S8 Cthe_2918 PF00347 Ribosomal protein L6 Cthe_2919 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Cthe_2920 PF00333 Ribosomal protein S5, N-terminal domain Cthe_2920 PF03719 Ribosomal protein S5, C-terminal domain Cthe_2921 PF00327 Ribosomal protein L30p/L7e Cthe_2922 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Cthe_2923 PF00344 SecY translocase Cthe_2924 PF05191 Adenylate kinase, active site lid Cthe_2925 PF00557 Metallopeptidase family M24 Cthe_2927 PF01176 Translation initiation factor 1A / IF-1 Cthe_2928 PF00444 Ribosomal protein L36 Cthe_2929 PF00416 Ribosomal protein S13/S18 Cthe_2930 PF00411 Ribosomal protein S11 Cthe_2931 PF00163 Ribosomal protein S4/S9 N-terminal domain Cthe_2931 PF01479 S4 domain Cthe_2932 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Cthe_2932 PF01000 RNA polymerase Rpb3/RpoA insert domain Cthe_2932 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Cthe_2933 PF01196 Ribosomal protein L17 Cthe_2934 PF00005 ABC transporter Cthe_2935 PF05175 Methyltransferase small domain Cthe_2936 PF00005 ABC transporter Cthe_2937 PF02361 Cobalt transport protein Cthe_2938 PF00480 ROK family Cthe_2939 PF01416 tRNA pseudouridine synthase Cthe_2940 PF02559 CarD-like/TRCF domain Cthe_2941 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Cthe_2942 PF00005 ABC transporter Cthe_2943 PF12679 ABC-2 family transporter protein Cthe_2944 PF00512 His Kinase A (phospho-acceptor) domain Cthe_2944 PF00497 Bacterial extracellular solute-binding proteins, family 3 Cthe_2944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_2945 PF00989 PAS fold Cthe_2945 PF17203 Single cache domain 3 Cthe_2945 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Cthe_2946 PF02542 YgbB family Cthe_2947 PF03129 Anticodon binding domain Cthe_2947 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Cthe_2947 PF04073 Aminoacyl-tRNA editing domain Cthe_2948 PF00188 Cysteine-rich secretory protein family Cthe_2949 PF00404 Dockerin type I domain Cthe_2949 PF00722 Glycosyl hydrolases family 16 Cthe_2950 PF00703 Glycosyl hydrolases family 2 Cthe_2950 PF02837 Glycosyl hydrolases family 2, sugar binding domain Cthe_2950 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain Cthe_2950 PF16990 Carbohydrate binding module (family 35) Cthe_2951 PF00404 Dockerin type I domain Cthe_2951 PF00963 Cohesin domain Cthe_2951 PF00942 Cellulose binding domain Cthe_2955 PF00665 Integrase core domain Cthe_2955 PF02796 Helix-turn-helix domain of resolvase Cthe_2958 PF00872 Transposase, Mutator family Cthe_2961 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Cthe_2962 PF00005 ABC transporter Cthe_2962 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Cthe_2963 PF00005 ABC transporter Cthe_2963 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Cthe_2964 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2964 PF12911 N-terminal TM domain of oligopeptide transport permease C Cthe_2965 PF00528 Binding-protein-dependent transport system inner membrane component Cthe_2969 PF00392 Bacterial regulatory proteins, gntR family Cthe_2970 PF00005 ABC transporter Cthe_2972 PF00457 Glycosyl hydrolases family 11 Cthe_2972 PF03422 Carbohydrate binding module (family 6) Cthe_2973 PF03749 Sugar fermentation stimulation protein RE domain Cthe_2973 PF17746 SfsA N-terminal OB domain Cthe_2974 PF12791 Anti-sigma factor N-terminus Cthe_2975 PF04542 Sigma-70 region 2 Cthe_2983 PF00672 HAMP domain Cthe_2983 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_2983 PF02743 Cache domain Cthe_2990 PF01625 Peptide methionine sulfoxide reductase Cthe_2991 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Cthe_2991 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_2996 PF01965 DJ-1/PfpI family Cthe_2998 PF00664 ABC transporter transmembrane region Cthe_2998 PF00005 ABC transporter Cthe_3000 PF01384 Phosphate transporter family Cthe_3003 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Cthe_3003 PF00037 4Fe-4S binding domain Cthe_3003 PF02256 Iron hydrogenase small subunit Cthe_3003 PF02906 Iron only hydrogenase large subunit, C-terminal domain Cthe_3004 PF07992 Pyridine nucleotide-disulphide oxidoreductase Cthe_3004 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Cthe_3004 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Cthe_3005 PF01476 LysM domain Cthe_3006 PF03734 L,D-transpeptidase catalytic domain Cthe_3006 PF01476 LysM domain Cthe_3008 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Cthe_3008 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Cthe_3012 PF17189 Glycosyl hydrolase family 30 beta sandwich domain Cthe_3013 PF00586 AIR synthase related protein, N-terminal domain Cthe_3013 PF02769 AIR synthase related protein, C-terminal domain Cthe_3014 PF01924 Hydrogenase formation hypA family Cthe_3015 PF01455 HupF/HypC family Cthe_3016 PF17788 HypF Kae1-like domain Cthe_3016 PF01300 Telomere recombination Cthe_3016 PF07503 HypF finger Cthe_3016 PF00708 Acylphosphatase Cthe_3017 PF02492 CobW/HypB/UreG, nucleotide-binding domain Cthe_3020 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Cthe_3020 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Cthe_3020 PF00374 Nickel-dependent hydrogenase Cthe_3022 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Cthe_3024 PF13244 Domain of unknown function (DUF4040) Cthe_3024 PF00361 Proton-conducting membrane transporter Cthe_3024 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Cthe_3026 PF01272 Transcription elongation factor, GreA/GreB, C-term Cthe_3026 PF03449 Transcription elongation factor, N-terminal Cthe_3027 PF00285 Citrate synthase, C-terminal domain Cthe_3028 PF00282 Pyridoxal-dependent decarboxylase conserved domain Cthe_3029 PF01584 CheW-like domain Cthe_3030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_3030 PF02203 Tar ligand binding domain homologue Cthe_3030 PF00672 HAMP domain Cthe_3035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Cthe_3035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Cthe_3035 PF01842 ACT domain Cthe_3036 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_3036 PF00672 HAMP domain Cthe_3036 PF02743 Cache domain Cthe_3039 PF17854 FtsK alpha domain Cthe_3039 PF09397 Ftsk gamma domain Cthe_3039 PF01580 FtsK/SpoIIIE family Cthe_3043 PF00689 Cation transporting ATPase, C-terminus Cthe_3043 PF00690 Cation transporter/ATPase, N-terminus Cthe_3046 PF01098 Cell cycle protein Cthe_3047 PF00905 Penicillin binding protein transpeptidase domain Cthe_3048 PF04002 RadC-like JAB domain Cthe_3050 PF00704 Glycosyl hydrolases family 18 Cthe_3050 PF00041 Fibronectin type III domain Cthe_3051 PF00872 Transposase, Mutator family Cthe_3052 PF05593 RHS Repeat Cthe_3059 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Cthe_3061 PF03965 Penicillinase repressor Cthe_3063 PF05448 Acetyl xylan esterase (AXE1) Cthe_3066 PF00005 ABC transporter Cthe_3068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cthe_3068 PF18698 Histidine kinase sensor domain Cthe_3068 PF00672 HAMP domain Cthe_3068 PF00989 PAS fold Cthe_3068 PF00512 His Kinase A (phospho-acceptor) domain Cthe_3069 PF00072 Response regulator receiver domain Cthe_3069 PF00486 Transcriptional regulatory protein, C terminal Cthe_3070 PF06866 Protein of unknown function (DUF1256) Cthe_3073 PF13419 Haloacid dehalogenase-like hydrolase Cthe_3075 PF00092 von Willebrand factor type A domain Cthe_3075 PF12450 von Willebrand factor Cthe_3075 PF12034 Domain of unknown function (DUF3520) Cthe_3076 PF04055 Radical SAM superfamily Cthe_3076 PF13186 Iron-sulfur cluster-binding domain Cthe_3077 PF00942 Cellulose binding domain Cthe_3077 PF00963 Cohesin domain Cthe_3077 PF00404 Dockerin type I domain Cthe_3078 PF00395 S-layer homology domain Cthe_3078 PF00963 Cohesin domain Cthe_3079 PF00963 Cohesin domain Cthe_3079 PF00395 S-layer homology domain Cthe_3080 PF00963 Cohesin domain Cthe_3080 PF00395 S-layer homology domain Cthe_3084 PF02926 THUMP domain Cthe_3084 PF01170 Putative RNA methylase family UPF0020 Cthe_3085 PF04397 LytTr DNA-binding domain Cthe_3085 PF00072 Response regulator receiver domain Cthe_3086 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cthe_3087 PF00072 Response regulator receiver domain Cthe_3087 PF08769 Sporulation initiation factor Spo0A C terminal Cthe_3090 PF05681 Fumarate hydratase (Fumerase) Cthe_3091 PF05681 Fumarate hydratase (Fumerase) Cthe_3091 PF05683 Fumarase C-terminus Cthe_3093 PF00709 Adenylosuccinate synthetase Cthe_3094 PF00535 Glycosyl transferase family 2 Cthe_3097 PF00535 Glycosyl transferase family 2 Cthe_3099 PF00535 Glycosyl transferase family 2 Cthe_3100 PF01678 Diaminopimelate epimerase Cthe_3101 PF00155 Aminotransferase class I and II Cthe_3102 PF03816 Cell envelope-related transcriptional attenuator domain Cthe_3104 PF01869 BadF/BadG/BcrA/BcrD ATPase family Cthe_3105 PF06508 Queuosine biosynthesis protein QueC Cthe_3106 PF01242 6-pyruvoyl tetrahydropterin synthase Cthe_3107 PF04055 Radical SAM superfamily Cthe_3108 PF03167 Uracil DNA glycosylase superfamily Cthe_3109 PF03167 Uracil DNA glycosylase superfamily Cthe_3110 PF00899 ThiF family Cthe_3112 PF04041 beta-1,4-mannooligosaccharide phosphorylase Cthe_3113 PF00483 Nucleotidyl transferase Cthe_3116 PF01238 Phosphomannose isomerase type I Cthe_3117 PF02535 ZIP Zinc transporter Cthe_3118 PF01814 Hemerythrin HHE cation binding domain Cthe_3119 PF01613 Flavin reductase like domain Cthe_3119 PF00301 Rubredoxin Cthe_3120 PF10371 Domain of unknown function Cthe_3120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cthe_3120 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Cthe_3120 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Cthe_3120 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Cthe_3122 PF00395 S-layer homology domain Cthe_3122 PF00963 Cohesin domain Cthe_3124 PF00501 AMP-binding enzyme Cthe_3124 PF13193 AMP-binding enzyme C-terminal domain Cthe_3125 PF00011 Hsp20/alpha crystallin family Cthe_3126 PF01467 Cytidylyltransferase-like Cthe_3126 PF00293 NUDIX domain Cthe_3129 PF03600 Citrate transporter Cthe_3132 PF01270 Glycosyl hydrolases family 8 Cthe_3132 PF00404 Dockerin type I domain Cthe_3133 PF00561 alpha/beta hydrolase fold Cthe_3133 PF08386 TAP-like protein Cthe_3136 PF00082 Subtilase family Cthe_3137 PF00082 Subtilase family Cthe_3141 PF13472 GDSL-like Lipase/Acylhydrolase family Cthe_3144 PF12833 Helix-turn-helix domain Cthe_3144 PF06445 GyrI-like small molecule binding domain Cthe_3147 PF00005 ABC transporter Cthe_3147 PF00664 ABC transporter transmembrane region Cthe_3148 PF00664 ABC transporter transmembrane region Cthe_3148 PF00005 ABC transporter Cthe_3149 PF01546 Peptidase family M20/M25/M40 Cthe_3149 PF07687 Peptidase dimerisation domain Cthe_3150 PF03186 CobD/Cbib protein Cthe_3151 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Cthe_3152 PF02654 Cobalamin-5-phosphate synthase Cthe_3153 PF00300 Histidine phosphatase superfamily (branch 1) Cthe_3155 PF12706 Beta-lactamase superfamily domain Cthe_3156 PF00672 HAMP domain Cthe_3156 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Cthe_3156 PF02743 Cache domain Cthe_3157 PF00682 HMGL-like Cthe_3158 PF00330 Aconitase family (aconitate hydratase) Cthe_3159 PF07729 FCD domain Cthe_3159 PF00392 Bacterial regulatory proteins, gntR family Cthe_3160 PF17126 RsmF rRNA methyltransferase first C-terminal domain Cthe_3160 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Cthe_3160 PF01189 16S rRNA methyltransferase RsmB/F Cthe_3161 PF01479 S4 domain Cthe_3161 PF00849 RNA pseudouridylate synthase Cthe_3164 PF00072 Response regulator receiver domain Cthe_3164 PF12833 Helix-turn-helix domain Cthe_3166 PF00483 Nucleotidyl transferase Cthe_3167 PF00483 Nucleotidyl transferase Cthe_3168 PF00781 Diacylglycerol kinase catalytic domain Cthe_3170 PF00005 ABC transporter Cthe_3172 PF00005 ABC transporter Cthe_3172 PF12704 MacB-like periplasmic core domain Cthe_3172 PF02687 FtsX-like permease family Cthe_3175 PF04239 Protein of unknown function (DUF421) Cthe_3176 PF00269 Small, acid-soluble spore proteins, alpha/beta type Cthe_3179 PF07943 Penicillin-binding protein 5, C-terminal domain Cthe_3179 PF00768 D-alanyl-D-alanine carboxypeptidase Cthe_3181 PF13936 Helix-turn-helix domain Cthe_3182 PF13936 Helix-turn-helix domain Cthe_3183 PF02254 TrkA-N domain Cthe_3183 PF02080 TrkA-C domain Cthe_3184 PF02386 Cation transport protein Cthe_3185 PF01702 Queuine tRNA-ribosyltransferase Cthe_3190 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Cthe_3190 PF14490 Helix-hairpin-helix containing domain Cthe_3190 PF13538 UvrD-like helicase C-terminal domain Cthe_3199 PF01594 AI-2E family transporter Cthe_3200 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Cthe_3200 PF02272 DHHA1 domain Cthe_3200 PF01411 tRNA synthetases class II (A) Cthe_3207 PF00872 Transposase, Mutator family Cthe_3208 PF13936 Helix-turn-helix domain Cthe_3216 PF00872 Transposase, Mutator family Cthe_3237 PF03432 Relaxase/Mobilisation nuclease domain