locus-tag class description Clo1313_0001 PF00308 Bacterial dnaA protein Clo1313_0001 PF08299 Bacterial dnaA protein helix-turn-helix Clo1313_0001 PF11638 DnaA N-terminal domain Clo1313_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Clo1313_0002 PF02767 DNA polymerase III beta subunit, central domain Clo1313_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Clo1313_0004 PF02463 RecF/RecN/SMC N terminal domain Clo1313_0006 PF00204 DNA gyrase B Clo1313_0006 PF00986 DNA gyrase B subunit, carboxyl terminus Clo1313_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0006 PF01751 Toprim domain Clo1313_0007 PF13614 AAA domain Clo1313_0008 PF17762 HTH domain found in ParB protein Clo1313_0008 PF02195 ParB-like nuclease domain Clo1313_0011 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clo1313_0011 PF02403 Seryl-tRNA synthetase N-terminal domain Clo1313_0012 PF07690 Major Facilitator Superfamily Clo1313_0014 PF00395 S-layer homology domain Clo1313_0016 PF04294 VanW like protein Clo1313_0017 PF01476 LysM domain Clo1313_0017 PF00246 Zinc carboxypeptidase Clo1313_0020 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clo1313_0021 PF00037 4Fe-4S binding domain Clo1313_0022 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clo1313_0022 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clo1313_0023 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clo1313_0030 PF01268 Formate--tetrahydrofolate ligase Clo1313_0031 PF05582 YabG peptidase U57 Clo1313_0034 PF08544 GHMP kinases C terminal Clo1313_0034 PF00288 GHMP kinases N terminal domain Clo1313_0035 PF07729 FCD domain Clo1313_0035 PF00392 Bacterial regulatory proteins, gntR family Clo1313_0036 PF00403 Heavy-metal-associated domain Clo1313_0038 PF01434 Peptidase family M41 Clo1313_0038 PF17862 AAA+ lid domain Clo1313_0038 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_0043 PF13514 AAA domain Clo1313_0044 PF00877 NlpC/P60 family Clo1313_0046 PF01471 Putative peptidoglycan binding domain Clo1313_0046 PF07486 Cell Wall Hydrolase Clo1313_0047 PF14620 YpeB sporulation Clo1313_0049 PF11638 DnaA N-terminal domain Clo1313_0049 PF08299 Bacterial dnaA protein helix-turn-helix Clo1313_0049 PF00308 Bacterial dnaA protein Clo1313_0051 PF01966 HD domain Clo1313_0054 PF00963 Cohesin domain Clo1313_0054 PF03442 Carbohydrate binding domain X2 Clo1313_0054 PF00942 Cellulose binding domain Clo1313_0056 PF01618 MotA/TolQ/ExbB proton channel family Clo1313_0057 PF00691 OmpA family Clo1313_0057 PF13677 Membrane MotB of proton-channel complex MotA/MotB Clo1313_0058 PF07136 Protein of unknown function (DUF1385) Clo1313_0059 PF05175 Methyltransferase small domain Clo1313_0059 PF17827 PrmC N-terminal domain Clo1313_0061 PF10531 SLBB domain Clo1313_0061 PF13375 RnfC Barrel sandwich hybrid domain Clo1313_0061 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clo1313_0061 PF13237 4Fe-4S dicluster domain Clo1313_0062 PF03116 NQR2, RnfD, RnfE family Clo1313_0063 PF04205 FMN-binding domain Clo1313_0064 PF02508 Rnf-Nqr subunit, membrane protein Clo1313_0065 PF02508 Rnf-Nqr subunit, membrane protein Clo1313_0066 PF04060 Putative Fe-S cluster Clo1313_0068 PF01202 Shikimate kinase Clo1313_0072 PF00455 DeoR C terminal sensor domain Clo1313_0072 PF08220 DeoR-like helix-turn-helix domain Clo1313_0073 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Clo1313_0073 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Clo1313_0074 PF00456 Transketolase, thiamine diphosphate binding domain Clo1313_0075 PF02779 Transketolase, pyrimidine binding domain Clo1313_0075 PF02780 Transketolase, C-terminal domain Clo1313_0076 PF00107 Zinc-binding dehydrogenase Clo1313_0076 PF08240 Alcohol dehydrogenase GroES-like domain Clo1313_0077 PF13407 Periplasmic binding protein domain Clo1313_0078 PF00005 ABC transporter Clo1313_0079 PF02653 Branched-chain amino acid transport system / permease component Clo1313_0080 PF00300 Histidine phosphatase superfamily (branch 1) Clo1313_0081 PF04434 SWIM zinc finger Clo1313_0081 PF00176 SNF2 family N-terminal domain Clo1313_0081 PF00271 Helicase conserved C-terminal domain Clo1313_0082 PF08439 Oligopeptidase F Clo1313_0082 PF01432 Peptidase family M3 Clo1313_0084 PF00395 S-layer homology domain Clo1313_0084 PF00331 Glycosyl hydrolase family 10 Clo1313_0084 PF02018 Carbohydrate binding domain Clo1313_0084 PF06452 Carbohydrate family 9 binding domain-like Clo1313_0085 PF14437 MafB19-like deaminase Clo1313_0087 PF07883 Cupin domain Clo1313_0088 PF06725 3D domain Clo1313_0089 PF00356 Bacterial regulatory proteins, lacI family Clo1313_0090 PF00395 S-layer homology domain Clo1313_0090 PF03424 Carbohydrate binding domain (family 17/28) Clo1313_0090 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_0091 PF05582 YabG peptidase U57 Clo1313_0092 PF01131 DNA topoisomerase Clo1313_0092 PF01751 Toprim domain Clo1313_0094 PF00924 Mechanosensitive ion channel Clo1313_0096 PF13180 PDZ domain Clo1313_0098 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clo1313_0099 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clo1313_0099 PF00205 Thiamine pyrophosphate enzyme, central domain Clo1313_0099 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Clo1313_0100 PF10369 Small subunit of acetolactate synthase Clo1313_0101 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Clo1313_0101 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Clo1313_0102 PF08502 LeuA allosteric (dimerisation) domain Clo1313_0102 PF00682 HMGL-like Clo1313_0104 PF04542 Sigma-70 region 2 Clo1313_0105 PF12791 Anti-sigma factor N-terminus Clo1313_0107 PF02082 Transcriptional regulator Clo1313_0108 PF01488 Shikimate / quinate 5-dehydrogenase Clo1313_0108 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Clo1313_0109 PF01488 Shikimate / quinate 5-dehydrogenase Clo1313_0109 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Clo1313_0110 PF03900 Porphobilinogen deaminase, C-terminal domain Clo1313_0110 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Clo1313_0111 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clo1313_0111 PF02602 Uroporphyrinogen-III synthase HemD Clo1313_0112 PF00490 Delta-aminolevulinic acid dehydratase Clo1313_0113 PF00202 Aminotransferase class-III Clo1313_0115 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_0116 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_0117 PF00005 ABC transporter Clo1313_0117 PF17850 CysA C-terminal regulatory domain Clo1313_0117 PF12857 TOBE-like domain Clo1313_0118 PF01507 Phosphoadenosine phosphosulfate reductase family Clo1313_0119 PF01507 Phosphoadenosine phosphosulfate reductase family Clo1313_0120 PF00009 Elongation factor Tu GTP binding domain Clo1313_0122 PF00899 ThiF family Clo1313_0124 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Clo1313_0124 PF13187 4Fe-4S dicluster domain Clo1313_0124 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Clo1313_0127 PF08281 Sigma-70, region 4 Clo1313_0127 PF04542 Sigma-70 region 2 Clo1313_0133 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Clo1313_0135 PF00404 Dockerin type I domain Clo1313_0135 PF02011 Glycosyl hydrolase family 48 Clo1313_0137 PF06463 Molybdenum Cofactor Synthesis C Clo1313_0137 PF04055 Radical SAM superfamily Clo1313_0138 PF06463 Molybdenum Cofactor Synthesis C Clo1313_0138 PF04055 Radical SAM superfamily Clo1313_0139 PF04055 Radical SAM superfamily Clo1313_0139 PF06463 Molybdenum Cofactor Synthesis C Clo1313_0142 PF06463 Molybdenum Cofactor Synthesis C Clo1313_0142 PF04055 Radical SAM superfamily Clo1313_0143 PF00535 Glycosyl transferase family 2 Clo1313_0144 PF16363 GDP-mannose 4,6 dehydratase Clo1313_0145 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clo1313_0146 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Clo1313_0147 PF16363 GDP-mannose 4,6 dehydratase Clo1313_0148 PF00483 Nucleotidyl transferase Clo1313_0150 PF00872 Transposase, Mutator family Clo1313_0152 PF04055 Radical SAM superfamily Clo1313_0152 PF02310 B12 binding domain Clo1313_0160 PF00005 ABC transporter Clo1313_0161 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_0164 PF01928 CYTH domain Clo1313_0165 PF02541 Ppx/GppA phosphatase family Clo1313_0166 PF00465 Iron-containing alcohol dehydrogenase Clo1313_0168 PF00809 Pterin binding enzyme Clo1313_0169 PF02152 Dihydroneopterin aldolase Clo1313_0170 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Clo1313_0172 PF02237 Biotin protein ligase C terminal domain Clo1313_0172 PF03099 Biotin/lipoate A/B protein ligase family Clo1313_0172 PF08279 HTH domain Clo1313_0175 PF03309 Type III pantothenate kinase Clo1313_0177 PF12791 Anti-sigma factor N-terminus Clo1313_0177 PF00331 Glycosyl hydrolase family 10 Clo1313_0180 PF00472 RF-1 domain Clo1313_0180 PF03462 PCRF domain Clo1313_0181 PF02535 ZIP Zinc transporter Clo1313_0182 PF03481 Putative GTP-binding controlling metal-binding Clo1313_0182 PF01300 Telomere recombination Clo1313_0183 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clo1313_0184 PF02502 Ribose/Galactose Isomerase Clo1313_0186 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clo1313_0187 PF00953 Glycosyl transferase family 4 Clo1313_0188 PF02350 UDP-N-acetylglucosamine 2-epimerase Clo1313_0189 PF00119 ATP synthase A chain Clo1313_0190 PF00137 ATP synthase subunit C Clo1313_0191 PF00430 ATP synthase B/B' CF(0) Clo1313_0192 PF00213 ATP synthase delta (OSCP) subunit Clo1313_0193 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clo1313_0193 PF00306 ATP synthase alpha/beta chain, C terminal domain Clo1313_0193 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clo1313_0194 PF00231 ATP synthase Clo1313_0195 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clo1313_0195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clo1313_0196 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Clo1313_0196 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Clo1313_0200 PF00395 S-layer homology domain Clo1313_0200 PF00963 Cohesin domain Clo1313_0202 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clo1313_0203 PF08486 Stage II sporulation protein Clo1313_0205 PF12116 Stage III sporulation protein D Clo1313_0207 PF00460 Flagella basal body rod protein Clo1313_0207 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clo1313_0208 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clo1313_0208 PF00460 Flagella basal body rod protein Clo1313_0211 PF12704 MacB-like periplasmic core domain Clo1313_0211 PF02687 FtsX-like permease family Clo1313_0211 PF00005 ABC transporter Clo1313_0213 PF07977 FabA-like domain Clo1313_0214 PF01225 Mur ligase family, catalytic domain Clo1313_0214 PF02875 Mur ligase family, glutamate ligase domain Clo1313_0214 PF08245 Mur ligase middle domain Clo1313_0215 PF00156 Phosphoribosyl transferase domain Clo1313_0215 PF09182 Bacterial purine repressor, N-terminal Clo1313_0216 PF04026 SpoVG Clo1313_0217 PF00483 Nucleotidyl transferase Clo1313_0217 PF00132 Bacterial transferase hexapeptide (six repeats) Clo1313_0217 PF14602 Hexapeptide repeat of succinyl-transferase Clo1313_0218 PF14572 Phosphoribosyl synthetase-associated domain Clo1313_0218 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Clo1313_0219 PF01195 Peptidyl-tRNA hydrolase Clo1313_0220 PF17757 UvrB interaction domain Clo1313_0220 PF00270 DEAD/DEAH box helicase Clo1313_0220 PF00271 Helicase conserved C-terminal domain Clo1313_0220 PF02559 CarD-like/TRCF domain Clo1313_0220 PF03461 TRCF domain Clo1313_0223 PF02311 AraC-like ligand binding domain Clo1313_0223 PF12833 Helix-turn-helix domain Clo1313_0224 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Clo1313_0224 PF01243 Pyridoxamine 5'-phosphate oxidase Clo1313_0225 PF03023 Lipid II flippase MurJ Clo1313_0226 PF13477 Glycosyl transferase 4-like Clo1313_0226 PF00534 Glycosyl transferases group 1 Clo1313_0228 PF02348 Cytidylyltransferase Clo1313_0228 PF13472 GDSL-like Lipase/Acylhydrolase family Clo1313_0229 PF02350 UDP-N-acetylglucosamine 2-epimerase Clo1313_0230 PF03102 NeuB family Clo1313_0230 PF08666 SAF domain Clo1313_0232 PF00483 Nucleotidyl transferase Clo1313_0233 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clo1313_0234 PF01370 NAD dependent epimerase/dehydratase family Clo1313_0236 PF01820 D-ala D-ala ligase N-terminus Clo1313_0236 PF07478 D-ala D-ala ligase C-terminus Clo1313_0237 PF02397 Bacterial sugar transferase Clo1313_0239 PF02719 Polysaccharide biosynthesis protein Clo1313_0242 PF13614 AAA domain Clo1313_0244 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Clo1313_0244 PF15714 Stage V sporulation protein T C-terminal, transcription factor Clo1313_0245 PF03819 MazG nucleotide pyrophosphohydrolase domain Clo1313_0246 PF00216 Bacterial DNA-binding protein Clo1313_0247 PF01479 S4 domain Clo1313_0251 PF00575 S1 RNA binding domain Clo1313_0252 PF00672 HAMP domain Clo1313_0252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_0253 PF03109 ABC1 family Clo1313_0255 PF00690 Cation transporter/ATPase, N-terminus Clo1313_0255 PF00689 Cation transporting ATPase, C-terminus Clo1313_0270 PF03572 Peptidase family S41 Clo1313_0270 PF00595 PDZ domain Clo1313_0271 PF07228 Stage II sporulation protein E (SpoIIE) Clo1313_0275 PF01207 Dihydrouridine synthase (Dus) Clo1313_0276 PF02491 SHS2 domain inserted in FTSA Clo1313_0277 PF03061 Thioesterase superfamily Clo1313_0278 PF01943 Polysaccharide biosynthesis protein Clo1313_0278 PF14667 Polysaccharide biosynthesis C-terminal domain Clo1313_0280 PF00155 Aminotransferase class I and II Clo1313_0280 PF00392 Bacterial regulatory proteins, gntR family Clo1313_0282 PF00132 Bacterial transferase hexapeptide (six repeats) Clo1313_0287 PF01256 Carbohydrate kinase Clo1313_0287 PF03853 YjeF-related protein N-terminus Clo1313_0288 PF00842 Alanine racemase, C-terminal domain Clo1313_0288 PF01168 Alanine racemase, N-terminal domain Clo1313_0289 PF01402 Ribbon-helix-helix protein, copG family Clo1313_0290 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Clo1313_0292 PF03808 Glycosyl transferase WecB/TagA/CpsF family Clo1313_0293 PF13579 Glycosyl transferase 4-like domain Clo1313_0293 PF00534 Glycosyl transferases group 1 Clo1313_0294 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Clo1313_0294 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Clo1313_0295 PF00456 Transketolase, thiamine diphosphate binding domain Clo1313_0296 PF02779 Transketolase, pyrimidine binding domain Clo1313_0296 PF02780 Transketolase, C-terminal domain Clo1313_0297 PF00005 ABC transporter Clo1313_0304 PF00920 Dehydratase family Clo1313_0305 PF00205 Thiamine pyrophosphate enzyme, central domain Clo1313_0305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Clo1313_0305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clo1313_0306 PF00471 Ribosomal protein L33 Clo1313_0307 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Clo1313_0308 PF02357 Transcription termination factor nusG Clo1313_0308 PF00467 KOW motif Clo1313_0309 PF00298 Ribosomal protein L11, RNA binding domain Clo1313_0309 PF03946 Ribosomal protein L11, N-terminal domain Clo1313_0310 PF00687 Ribosomal protein L1p/L10e family Clo1313_0311 PF00466 Ribosomal protein L10 Clo1313_0312 PF00542 Ribosomal protein L7/L12 C-terminal domain Clo1313_0312 PF16320 Ribosomal protein L7/L12 dimerisation domain Clo1313_0313 PF04565 RNA polymerase Rpb2, domain 3 Clo1313_0313 PF04563 RNA polymerase beta subunit Clo1313_0313 PF04561 RNA polymerase Rpb2, domain 2 Clo1313_0313 PF10385 RNA polymerase beta subunit external 1 domain Clo1313_0313 PF00562 RNA polymerase Rpb2, domain 6 Clo1313_0313 PF04560 RNA polymerase Rpb2, domain 7 Clo1313_0314 PF04998 RNA polymerase Rpb1, domain 5 Clo1313_0314 PF05000 RNA polymerase Rpb1, domain 4 Clo1313_0314 PF04983 RNA polymerase Rpb1, domain 3 Clo1313_0314 PF04997 RNA polymerase Rpb1, domain 1 Clo1313_0314 PF00623 RNA polymerase Rpb1, domain 2 Clo1313_0315 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Clo1313_0316 PF00164 Ribosomal protein S12/S23 Clo1313_0317 PF00177 Ribosomal protein S7p/S5e Clo1313_0318 PF14492 Elongation Factor G, domain II Clo1313_0318 PF00009 Elongation factor Tu GTP binding domain Clo1313_0318 PF03144 Elongation factor Tu domain 2 Clo1313_0318 PF00679 Elongation factor G C-terminus Clo1313_0318 PF03764 Elongation factor G, domain IV Clo1313_0319 PF00009 Elongation factor Tu GTP binding domain Clo1313_0319 PF03144 Elongation factor Tu domain 2 Clo1313_0319 PF03143 Elongation factor Tu C-terminal domain Clo1313_0320 PF08281 Sigma-70, region 4 Clo1313_0320 PF04542 Sigma-70 region 2 Clo1313_0323 PF04294 VanW like protein Clo1313_0324 PF00381 PTS HPr component phosphorylation site Clo1313_0325 PF02896 PEP-utilising enzyme, TIM barrel domain Clo1313_0325 PF00391 PEP-utilising enzyme, mobile domain Clo1313_0325 PF05524 PEP-utilising enzyme, N-terminal Clo1313_0326 PF01541 GIY-YIG catalytic domain Clo1313_0326 PF02151 UvrB/uvrC motif Clo1313_0326 PF08459 UvrC Helix-hairpin-helix N-terminal Clo1313_0328 PF05698 Bacterial trigger factor protein (TF) C-terminus Clo1313_0328 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Clo1313_0328 PF05697 Bacterial trigger factor protein (TF) Clo1313_0329 PF00574 Clp protease Clo1313_0330 PF06689 ClpX C4-type zinc finger Clo1313_0330 PF10431 C-terminal, D2-small domain, of ClpB protein Clo1313_0330 PF07724 AAA domain (Cdc48 subfamily) Clo1313_0331 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_0331 PF05362 Lon protease (S16) C-terminal proteolytic domain Clo1313_0332 PF00814 Glycoprotease family Clo1313_0333 PF01464 Transglycosylase SLT domain Clo1313_0336 PF02811 PHP domain Clo1313_0337 PF01668 SmpB protein Clo1313_0346 PF03471 Transporter associated domain Clo1313_0346 PF00999 Sodium/hydrogen exchanger family Clo1313_0346 PF02080 TrkA-C domain Clo1313_0348 PF06445 GyrI-like small molecule binding domain Clo1313_0348 PF12833 Helix-turn-helix domain Clo1313_0349 PF00759 Glycosyl hydrolase family 9 Clo1313_0349 PF00942 Cellulose binding domain Clo1313_0350 PF00942 Cellulose binding domain Clo1313_0350 PF00404 Dockerin type I domain Clo1313_0350 PF00759 Glycosyl hydrolase family 9 Clo1313_0357 PF00149 Calcineurin-like phosphoesterase Clo1313_0358 PF01814 Hemerythrin HHE cation binding domain Clo1313_0358 PF04405 Domain of Unknown function (DUF542) Clo1313_0359 PF00258 Flavodoxin Clo1313_0359 PF00753 Metallo-beta-lactamase superfamily Clo1313_0359 PF00301 Rubredoxin Clo1313_0360 PF00027 Cyclic nucleotide-binding domain Clo1313_0360 PF13545 Crp-like helix-turn-helix domain Clo1313_0364 PF04973 Nicotinamide mononucleotide transporter Clo1313_0365 PF01381 Helix-turn-helix Clo1313_0365 PF13521 AAA domain Clo1313_0370 PF00963 Cohesin domain Clo1313_0370 PF00395 S-layer homology domain Clo1313_0372 PF02310 B12 binding domain Clo1313_0372 PF02607 B12 binding domain Clo1313_0373 PF01208 Uroporphyrinogen decarboxylase (URO-D) Clo1313_0374 PF01208 Uroporphyrinogen decarboxylase (URO-D) Clo1313_0375 PF00970 Oxidoreductase FAD-binding domain Clo1313_0375 PF00111 2Fe-2S iron-sulfur cluster binding domain Clo1313_0375 PF00175 Oxidoreductase NAD-binding domain Clo1313_0377 PF09084 NMT1/THI5 like Clo1313_0378 PF00005 ABC transporter Clo1313_0379 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_0380 PF00501 AMP-binding enzyme Clo1313_0380 PF14535 AMP-binding enzyme C-terminal domain Clo1313_0381 PF00155 Aminotransferase class I and II Clo1313_0382 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clo1313_0384 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clo1313_0384 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clo1313_0385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clo1313_0387 PF01042 Endoribonuclease L-PSP Clo1313_0388 PF01053 Cys/Met metabolism PLP-dependent enzyme Clo1313_0389 PF00155 Aminotransferase class I and II Clo1313_0390 PF03063 Prismane/CO dehydrogenase family Clo1313_0392 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_0393 PF00005 ABC transporter Clo1313_0395 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_0396 PF00356 Bacterial regulatory proteins, lacI family Clo1313_0397 PF00722 Glycosyl hydrolases family 16 Clo1313_0398 PF02690 Na+/Pi-cotransporter Clo1313_0399 PF02156 Glycosyl hydrolase family 26 Clo1313_0400 PF00759 Glycosyl hydrolase family 9 Clo1313_0400 PF00942 Cellulose binding domain Clo1313_0401 PF00072 Response regulator receiver domain Clo1313_0401 PF00486 Transcriptional regulatory protein, C terminal Clo1313_0402 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0402 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_0403 PF01921 tRNA synthetases class I (K) Clo1313_0405 PF01584 CheW-like domain Clo1313_0406 PF02895 Signal transducing histidine kinase, homodimeric domain Clo1313_0406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0406 PF01627 Hpt domain Clo1313_0406 PF00072 Response regulator receiver domain Clo1313_0406 PF01584 CheW-like domain Clo1313_0407 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_0408 PF03705 CheR methyltransferase, all-alpha domain Clo1313_0408 PF01739 CheR methyltransferase, SAM binding domain Clo1313_0409 PF01339 CheB methylesterase Clo1313_0409 PF00072 Response regulator receiver domain Clo1313_0410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Clo1313_0410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Clo1313_0411 PF01595 Cyclin M transmembrane N-terminal domain Clo1313_0411 PF00571 CBS domain Clo1313_0411 PF03471 Transporter associated domain Clo1313_0413 PF00404 Dockerin type I domain Clo1313_0413 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_0415 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Clo1313_0415 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Clo1313_0416 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Clo1313_0416 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Clo1313_0417 PF13361 UvrD-like helicase C-terminal domain Clo1313_0417 PF00580 UvrD/REP helicase N-terminal domain Clo1313_0420 PF02018 Carbohydrate binding domain Clo1313_0420 PF00404 Dockerin type I domain Clo1313_0420 PF00756 Putative esterase Clo1313_0420 PF00331 Glycosyl hydrolase family 10 Clo1313_0421 PF13393 Histidyl-tRNA synthetase Clo1313_0422 PF01634 ATP phosphoribosyltransferase Clo1313_0423 PF00815 Histidinol dehydrogenase Clo1313_0424 PF00155 Aminotransferase class I and II Clo1313_0425 PF00475 Imidazoleglycerol-phosphate dehydratase Clo1313_0426 PF01259 SAICAR synthetase Clo1313_0427 PF00117 Glutamine amidotransferase class-I Clo1313_0428 PF00977 Histidine biosynthesis protein Clo1313_0429 PF00977 Histidine biosynthesis protein Clo1313_0430 PF01502 Phosphoribosyl-AMP cyclohydrolase Clo1313_0430 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Clo1313_0432 PF00166 Chaperonin 10 Kd subunit Clo1313_0433 PF00118 TCP-1/cpn60 chaperonin family Clo1313_0436 PF00704 Glycosyl hydrolases family 18 Clo1313_0438 PF03449 Transcription elongation factor, N-terminal Clo1313_0438 PF01272 Transcription elongation factor, GreA/GreB, C-term Clo1313_0439 PF01740 STAS domain Clo1313_0441 PF04545 Sigma-70, region 4 Clo1313_0441 PF04542 Sigma-70 region 2 Clo1313_0441 PF04539 Sigma-70 region 3 Clo1313_0444 PF00338 Ribosomal protein S10p/S20e Clo1313_0445 PF00297 Ribosomal protein L3 Clo1313_0446 PF00573 Ribosomal protein L4/L1 family Clo1313_0447 PF00276 Ribosomal protein L23 Clo1313_0448 PF00181 Ribosomal Proteins L2, RNA binding domain Clo1313_0448 PF03947 Ribosomal Proteins L2, C-terminal domain Clo1313_0449 PF00203 Ribosomal protein S19 Clo1313_0450 PF00237 Ribosomal protein L22p/L17e Clo1313_0451 PF07650 KH domain Clo1313_0451 PF00189 Ribosomal protein S3, C-terminal domain Clo1313_0452 PF00252 Ribosomal protein L16p/L10e Clo1313_0453 PF00831 Ribosomal L29 protein Clo1313_0454 PF00366 Ribosomal protein S17 Clo1313_0455 PF00238 Ribosomal protein L14p/L23e Clo1313_0456 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Clo1313_0457 PF00281 Ribosomal protein L5 Clo1313_0457 PF00673 ribosomal L5P family C-terminus Clo1313_0458 PF00253 Ribosomal protein S14p/S29e Clo1313_0459 PF00410 Ribosomal protein S8 Clo1313_0460 PF00347 Ribosomal protein L6 Clo1313_0461 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Clo1313_0462 PF00333 Ribosomal protein S5, N-terminal domain Clo1313_0462 PF03719 Ribosomal protein S5, C-terminal domain Clo1313_0463 PF00327 Ribosomal protein L30p/L7e Clo1313_0464 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Clo1313_0465 PF00344 SecY translocase Clo1313_0466 PF05191 Adenylate kinase, active site lid Clo1313_0467 PF00557 Metallopeptidase family M24 Clo1313_0469 PF01176 Translation initiation factor 1A / IF-1 Clo1313_0470 PF00444 Ribosomal protein L36 Clo1313_0471 PF00416 Ribosomal protein S13/S18 Clo1313_0472 PF00411 Ribosomal protein S11 Clo1313_0473 PF00163 Ribosomal protein S4/S9 N-terminal domain Clo1313_0473 PF01479 S4 domain Clo1313_0474 PF01000 RNA polymerase Rpb3/RpoA insert domain Clo1313_0474 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Clo1313_0474 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Clo1313_0475 PF01196 Ribosomal protein L17 Clo1313_0476 PF00005 ABC transporter Clo1313_0477 PF05175 Methyltransferase small domain Clo1313_0480 PF01555 DNA methylase Clo1313_0486 PF07508 Recombinase Clo1313_0486 PF00239 Resolvase, N terminal domain Clo1313_0486 PF13408 Recombinase zinc beta ribbon domain Clo1313_0487 PF00005 ABC transporter Clo1313_0488 PF02361 Cobalt transport protein Clo1313_0489 PF00480 ROK family Clo1313_0490 PF01416 tRNA pseudouridine synthase Clo1313_0491 PF02559 CarD-like/TRCF domain Clo1313_0492 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Clo1313_0493 PF00005 ABC transporter Clo1313_0494 PF12679 ABC-2 family transporter protein Clo1313_0495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0495 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_0495 PF00497 Bacterial extracellular solute-binding proteins, family 3 Clo1313_0496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0496 PF00989 PAS fold Clo1313_0496 PF17203 Single cache domain 3 Clo1313_0496 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Clo1313_0497 PF02542 YgbB family Clo1313_0498 PF03129 Anticodon binding domain Clo1313_0498 PF04073 Aminoacyl-tRNA editing domain Clo1313_0498 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clo1313_0499 PF00188 Cysteine-rich secretory protein family Clo1313_0500 PF00404 Dockerin type I domain Clo1313_0500 PF00722 Glycosyl hydrolases family 16 Clo1313_0501 PF02837 Glycosyl hydrolases family 2, sugar binding domain Clo1313_0501 PF16990 Carbohydrate binding module (family 35) Clo1313_0501 PF00703 Glycosyl hydrolases family 2 Clo1313_0501 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain Clo1313_0502 PF00963 Cohesin domain Clo1313_0502 PF00404 Dockerin type I domain Clo1313_0502 PF00942 Cellulose binding domain Clo1313_0510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clo1313_0511 PF00005 ABC transporter Clo1313_0511 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clo1313_0512 PF00005 ABC transporter Clo1313_0512 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Clo1313_0513 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_0513 PF12911 N-terminal TM domain of oligopeptide transport permease C Clo1313_0514 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_0518 PF00392 Bacterial regulatory proteins, gntR family Clo1313_0519 PF00005 ABC transporter Clo1313_0521 PF03422 Carbohydrate binding module (family 6) Clo1313_0521 PF00457 Glycosyl hydrolases family 11 Clo1313_0522 PF00457 Glycosyl hydrolases family 11 Clo1313_0522 PF03422 Carbohydrate binding module (family 6) Clo1313_0523 PF17746 SfsA N-terminal OB domain Clo1313_0523 PF03749 Sugar fermentation stimulation protein RE domain Clo1313_0524 PF12791 Anti-sigma factor N-terminus Clo1313_0525 PF04542 Sigma-70 region 2 Clo1313_0532 PF02743 Cache domain Clo1313_0532 PF00672 HAMP domain Clo1313_0532 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_0541 PF01625 Peptide methionine sulfoxide reductase Clo1313_0542 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_0542 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Clo1313_0547 PF01965 DJ-1/PfpI family Clo1313_0549 PF00664 ABC transporter transmembrane region Clo1313_0549 PF00005 ABC transporter Clo1313_0551 PF01384 Phosphate transporter family Clo1313_0554 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clo1313_0554 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clo1313_0554 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_0555 PF01476 LysM domain Clo1313_0556 PF03734 L,D-transpeptidase catalytic domain Clo1313_0556 PF01476 LysM domain Clo1313_0558 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Clo1313_0558 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Clo1313_0563 PF17189 Glycosyl hydrolase family 30 beta sandwich domain Clo1313_0564 PF00586 AIR synthase related protein, N-terminal domain Clo1313_0564 PF02769 AIR synthase related protein, C-terminal domain Clo1313_0565 PF01924 Hydrogenase formation hypA family Clo1313_0566 PF01455 HupF/HypC family Clo1313_0567 PF07503 HypF finger Clo1313_0567 PF00708 Acylphosphatase Clo1313_0567 PF17788 HypF Kae1-like domain Clo1313_0567 PF01300 Telomere recombination Clo1313_0568 PF02492 CobW/HypB/UreG, nucleotide-binding domain Clo1313_0571 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Clo1313_0571 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Clo1313_0571 PF00374 Nickel-dependent hydrogenase Clo1313_0573 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Clo1313_0575 PF13244 Domain of unknown function (DUF4040) Clo1313_0575 PF00361 Proton-conducting membrane transporter Clo1313_0575 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Clo1313_0577 PF01272 Transcription elongation factor, GreA/GreB, C-term Clo1313_0577 PF03449 Transcription elongation factor, N-terminal Clo1313_0578 PF00285 Citrate synthase, C-terminal domain Clo1313_0579 PF00282 Pyridoxal-dependent decarboxylase conserved domain Clo1313_0580 PF01584 CheW-like domain Clo1313_0581 PF00672 HAMP domain Clo1313_0581 PF02203 Tar ligand binding domain homologue Clo1313_0581 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_0586 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Clo1313_0586 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Clo1313_0586 PF01842 ACT domain Clo1313_0587 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_0587 PF02743 Cache domain Clo1313_0587 PF00672 HAMP domain Clo1313_0590 PF01580 FtsK/SpoIIIE family Clo1313_0590 PF09397 Ftsk gamma domain Clo1313_0590 PF17854 FtsK alpha domain Clo1313_0594 PF00689 Cation transporting ATPase, C-terminus Clo1313_0594 PF00690 Cation transporter/ATPase, N-terminus Clo1313_0597 PF01098 Cell cycle protein Clo1313_0598 PF00905 Penicillin binding protein transpeptidase domain Clo1313_0599 PF04002 RadC-like JAB domain Clo1313_0601 PF00704 Glycosyl hydrolases family 18 Clo1313_0601 PF00041 Fibronectin type III domain Clo1313_0602 PF00872 Transposase, Mutator family Clo1313_0603 PF05593 RHS Repeat Clo1313_0610 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Clo1313_0613 PF05448 Acetyl xylan esterase (AXE1) Clo1313_0616 PF00005 ABC transporter Clo1313_0618 PF00672 HAMP domain Clo1313_0618 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0618 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_0618 PF13426 PAS domain Clo1313_0619 PF00072 Response regulator receiver domain Clo1313_0619 PF00486 Transcriptional regulatory protein, C terminal Clo1313_0620 PF06866 Protein of unknown function (DUF1256) Clo1313_0623 PF13419 Haloacid dehalogenase-like hydrolase Clo1313_0625 PF12450 von Willebrand factor Clo1313_0625 PF00092 von Willebrand factor type A domain Clo1313_0625 PF12034 Domain of unknown function (DUF3520) Clo1313_0626 PF13186 Iron-sulfur cluster-binding domain Clo1313_0626 PF04055 Radical SAM superfamily Clo1313_0627 PF00963 Cohesin domain Clo1313_0627 PF00404 Dockerin type I domain Clo1313_0627 PF00942 Cellulose binding domain Clo1313_0628 PF00395 S-layer homology domain Clo1313_0628 PF00963 Cohesin domain Clo1313_0629 PF00395 S-layer homology domain Clo1313_0629 PF00963 Cohesin domain Clo1313_0630 PF00395 S-layer homology domain Clo1313_0630 PF00963 Cohesin domain Clo1313_0634 PF02926 THUMP domain Clo1313_0634 PF01170 Putative RNA methylase family UPF0020 Clo1313_0635 PF00072 Response regulator receiver domain Clo1313_0635 PF04397 LytTr DNA-binding domain Clo1313_0636 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clo1313_0637 PF00072 Response regulator receiver domain Clo1313_0637 PF08769 Sporulation initiation factor Spo0A C terminal Clo1313_0638 PF00216 Bacterial DNA-binding protein Clo1313_0640 PF05681 Fumarate hydratase (Fumerase) Clo1313_0641 PF05683 Fumarase C-terminus Clo1313_0641 PF05681 Fumarate hydratase (Fumerase) Clo1313_0643 PF00709 Adenylosuccinate synthetase Clo1313_0644 PF01797 Transposase IS200 like Clo1313_0645 PF00535 Glycosyl transferase family 2 Clo1313_0648 PF00535 Glycosyl transferase family 2 Clo1313_0650 PF00535 Glycosyl transferase family 2 Clo1313_0651 PF01678 Diaminopimelate epimerase Clo1313_0652 PF00155 Aminotransferase class I and II Clo1313_0653 PF03816 Cell envelope-related transcriptional attenuator domain Clo1313_0655 PF01869 BadF/BadG/BcrA/BcrD ATPase family Clo1313_0656 PF06508 Queuosine biosynthesis protein QueC Clo1313_0657 PF01242 6-pyruvoyl tetrahydropterin synthase Clo1313_0658 PF04055 Radical SAM superfamily Clo1313_0659 PF03167 Uracil DNA glycosylase superfamily Clo1313_0660 PF03167 Uracil DNA glycosylase superfamily Clo1313_0661 PF00899 ThiF family Clo1313_0662 PF01797 Transposase IS200 like Clo1313_0665 PF04041 beta-1,4-mannooligosaccharide phosphorylase Clo1313_0666 PF00483 Nucleotidyl transferase Clo1313_0669 PF01238 Phosphomannose isomerase type I Clo1313_0670 PF02535 ZIP Zinc transporter Clo1313_0671 PF01814 Hemerythrin HHE cation binding domain Clo1313_0672 PF01613 Flavin reductase like domain Clo1313_0672 PF00301 Rubredoxin Clo1313_0673 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Clo1313_0673 PF10371 Domain of unknown function Clo1313_0673 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Clo1313_0673 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Clo1313_0673 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Clo1313_0675 PF00395 S-layer homology domain Clo1313_0675 PF00963 Cohesin domain Clo1313_0677 PF00501 AMP-binding enzyme Clo1313_0677 PF13193 AMP-binding enzyme C-terminal domain Clo1313_0678 PF00011 Hsp20/alpha crystallin family Clo1313_0679 PF00293 NUDIX domain Clo1313_0679 PF01467 Cytidylyltransferase-like Clo1313_0682 PF03600 Citrate transporter Clo1313_0685 PF01270 Glycosyl hydrolases family 8 Clo1313_0685 PF00404 Dockerin type I domain Clo1313_0686 PF00561 alpha/beta hydrolase fold Clo1313_0686 PF08386 TAP-like protein Clo1313_0689 PF05922 Peptidase inhibitor I9 Clo1313_0689 PF00082 Subtilase family Clo1313_0693 PF13472 GDSL-like Lipase/Acylhydrolase family Clo1313_0698 PF00664 ABC transporter transmembrane region Clo1313_0698 PF00005 ABC transporter Clo1313_0699 PF00664 ABC transporter transmembrane region Clo1313_0699 PF00005 ABC transporter Clo1313_0700 PF01546 Peptidase family M20/M25/M40 Clo1313_0700 PF07687 Peptidase dimerisation domain Clo1313_0701 PF03186 CobD/Cbib protein Clo1313_0702 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Clo1313_0703 PF02654 Cobalamin-5-phosphate synthase Clo1313_0704 PF00300 Histidine phosphatase superfamily (branch 1) Clo1313_0706 PF12706 Beta-lactamase superfamily domain Clo1313_0707 PF02743 Cache domain Clo1313_0707 PF00672 HAMP domain Clo1313_0707 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_0708 PF00682 HMGL-like Clo1313_0709 PF00330 Aconitase family (aconitate hydratase) Clo1313_0710 PF00392 Bacterial regulatory proteins, gntR family Clo1313_0710 PF07729 FCD domain Clo1313_0711 PF17126 RsmF rRNA methyltransferase first C-terminal domain Clo1313_0711 PF01189 16S rRNA methyltransferase RsmB/F Clo1313_0711 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Clo1313_0712 PF00849 RNA pseudouridylate synthase Clo1313_0712 PF01479 S4 domain Clo1313_0715 PF12833 Helix-turn-helix domain Clo1313_0715 PF00072 Response regulator receiver domain Clo1313_0717 PF00483 Nucleotidyl transferase Clo1313_0718 PF00483 Nucleotidyl transferase Clo1313_0719 PF00781 Diacylglycerol kinase catalytic domain Clo1313_0721 PF00005 ABC transporter Clo1313_0723 PF12704 MacB-like periplasmic core domain Clo1313_0723 PF02687 FtsX-like permease family Clo1313_0723 PF00005 ABC transporter Clo1313_0726 PF04239 Protein of unknown function (DUF421) Clo1313_0727 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clo1313_0730 PF07943 Penicillin-binding protein 5, C-terminal domain Clo1313_0730 PF00768 D-alanyl-D-alanine carboxypeptidase Clo1313_0732 PF02254 TrkA-N domain Clo1313_0732 PF02080 TrkA-C domain Clo1313_0733 PF02386 Cation transport protein Clo1313_0734 PF01702 Queuine tRNA-ribosyltransferase Clo1313_0739 PF13538 UvrD-like helicase C-terminal domain Clo1313_0739 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Clo1313_0739 PF14490 Helix-hairpin-helix containing domain Clo1313_0748 PF01594 AI-2E family transporter Clo1313_0749 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clo1313_0749 PF02272 DHHA1 domain Clo1313_0749 PF01411 tRNA synthetases class II (A) Clo1313_0766 PF00872 Transposase, Mutator family Clo1313_0785 PF00872 Transposase, Mutator family Clo1313_0790 PF00872 Transposase, Mutator family Clo1313_0791 PF01266 FAD dependent oxidoreductase Clo1313_0791 PF00355 Rieske [2Fe-2S] domain Clo1313_0794 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_0795 PF00005 ABC transporter Clo1313_0800 PF01636 Phosphotransferase enzyme family Clo1313_0805 PF13180 PDZ domain Clo1313_0811 PF04542 Sigma-70 region 2 Clo1313_0811 PF08281 Sigma-70, region 4 Clo1313_0812 PF11738 Protein of unknown function (DUF3298) Clo1313_0812 PF13739 Deacetylase PdaC Clo1313_0816 PF01797 Transposase IS200 like Clo1313_0820 PF00232 Glycosyl hydrolase family 1 Clo1313_0822 PF03591 AzlC protein Clo1313_0823 PF03030 Inorganic H+ pyrophosphatase Clo1313_0825 PF01594 AI-2E family transporter Clo1313_0827 PF01797 Transposase IS200 like Clo1313_0828 PF06271 RDD family Clo1313_0829 PF01343 Peptidase family S49 Clo1313_0830 PF02659 Putative manganese efflux pump Clo1313_0833 PF00005 ABC transporter Clo1313_0833 PF13732 Domain of unknown function (DUF4162) Clo1313_0836 PF00291 Pyridoxal-phosphate dependent enzyme Clo1313_0837 PF00290 Tryptophan synthase alpha chain Clo1313_0838 PF01545 Cation efflux family Clo1313_0838 PF16916 Dimerisation domain of Zinc Transporter Clo1313_0839 PF00989 PAS fold Clo1313_0839 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_0839 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0839 PF00672 HAMP domain Clo1313_0841 PF00486 Transcriptional regulatory protein, C terminal Clo1313_0841 PF00072 Response regulator receiver domain Clo1313_0844 PF08757 CotH kinase protein Clo1313_0845 PF07664 Ferrous iron transport protein B C terminus Clo1313_0845 PF17910 FeoB cytosolic helical domain Clo1313_0845 PF02421 Ferrous iron transport protein B Clo1313_0845 PF07670 Nucleoside recognition Clo1313_0847 PF02742 Iron dependent repressor, metal binding and dimerisation domain Clo1313_0847 PF01325 Iron dependent repressor, N-terminal DNA binding domain Clo1313_0849 PF07745 Glycosyl hydrolase family 53 Clo1313_0851 PF00404 Dockerin type I domain Clo1313_0852 PF01501 Glycosyl transferase family 8 Clo1313_0852 PF08437 Glycosyl transferase family 8 C-terminal Clo1313_0853 PF13091 PLD-like domain Clo1313_0855 PF00486 Transcriptional regulatory protein, C terminal Clo1313_0855 PF00072 Response regulator receiver domain Clo1313_0856 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_0856 PF13426 PAS domain Clo1313_0856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0856 PF00672 HAMP domain Clo1313_0857 PF08502 LeuA allosteric (dimerisation) domain Clo1313_0857 PF00682 HMGL-like Clo1313_0858 PF12146 Serine aminopeptidase, S33 Clo1313_0859 PF13735 tRNA nucleotidyltransferase domain 2 putative Clo1313_0859 PF12627 Probable RNA and SrmB- binding site of polymerase A Clo1313_0859 PF01743 Poly A polymerase head domain Clo1313_0860 PF01371 Trp repressor protein Clo1313_0863 PF01043 SecA preprotein cross-linking domain Clo1313_0863 PF07517 SecA DEAD-like domain Clo1313_0863 PF02810 SEC-C motif Clo1313_0863 PF07516 SecA Wing and Scaffold domain Clo1313_0864 PF02875 Mur ligase family, glutamate ligase domain Clo1313_0864 PF08245 Mur ligase middle domain Clo1313_0866 PF01734 Patatin-like phospholipase Clo1313_0867 PF00291 Pyridoxal-phosphate dependent enzyme Clo1313_0867 PF14821 Threonine synthase N terminus Clo1313_0868 PF00072 Response regulator receiver domain Clo1313_0869 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Clo1313_0870 PF01966 HD domain Clo1313_0872 PF01842 ACT domain Clo1313_0872 PF00742 Homoserine dehydrogenase Clo1313_0872 PF03447 Homoserine dehydrogenase, NAD binding domain Clo1313_0873 PF13840 ACT domain Clo1313_0873 PF00696 Amino acid kinase family Clo1313_0880 PF05593 RHS Repeat Clo1313_0883 PF01230 HIT domain Clo1313_0884 PF00963 Cohesin domain Clo1313_0884 PF00395 S-layer homology domain Clo1313_0885 PF01797 Transposase IS200 like Clo1313_0887 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Clo1313_0890 PF13614 AAA domain Clo1313_0892 PF01370 NAD dependent epimerase/dehydratase family Clo1313_0896 PF00534 Glycosyl transferases group 1 Clo1313_0898 PF00535 Glycosyl transferase family 2 Clo1313_0901 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Clo1313_0901 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Clo1313_0901 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Clo1313_0903 PF00436 Single-strand binding protein family Clo1313_0904 PF02397 Bacterial sugar transferase Clo1313_0905 PF01165 Ribosomal protein S21 Clo1313_0907 PF17768 RecJ OB domain Clo1313_0907 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Clo1313_0907 PF01368 DHH family Clo1313_0907 PF02272 DHHA1 domain Clo1313_0908 PF00156 Phosphoribosyl transferase domain Clo1313_0909 PF02824 TGS domain Clo1313_0909 PF13291 ACT domain Clo1313_0909 PF04607 Region found in RelA / SpoT proteins Clo1313_0910 PF02580 D-Tyr-tRNA(Tyr) deacylase Clo1313_0911 PF00753 Metallo-beta-lactamase superfamily Clo1313_0912 PF04055 Radical SAM superfamily Clo1313_0914 PF00437 Type II/IV secretion system protein Clo1313_0922 PF03129 Anticodon binding domain Clo1313_0922 PF13393 Histidyl-tRNA synthetase Clo1313_0923 PF00152 tRNA synthetases class II (D, K and N) Clo1313_0923 PF02938 GAD domain Clo1313_0923 PF01336 OB-fold nucleic acid binding domain Clo1313_0924 PF10502 Signal peptidase, peptidase S26 Clo1313_0929 PF00679 Elongation factor G C-terminus Clo1313_0929 PF00009 Elongation factor Tu GTP binding domain Clo1313_0929 PF03144 Elongation factor Tu domain 2 Clo1313_0929 PF06421 GTP-binding protein LepA C-terminus Clo1313_0930 PF06969 HemN C-terminal domain Clo1313_0930 PF04055 Radical SAM superfamily Clo1313_0931 PF01628 HrcA protein C terminal domain Clo1313_0932 PF01025 GrpE Clo1313_0933 PF00012 Hsp70 protein Clo1313_0934 PF00226 DnaJ domain Clo1313_0934 PF01556 DnaJ C terminal domain Clo1313_0934 PF00684 DnaJ central domain Clo1313_0936 PF04452 RNA methyltransferase Clo1313_0937 PF00072 Response regulator receiver domain Clo1313_0939 PF08340 Domain of unknown function (DUF1732) Clo1313_0939 PF03755 YicC-like family, N-terminal region Clo1313_0940 PF04025 Domain of unknown function (DUF370) Clo1313_0941 PF00625 Guanylate kinase Clo1313_0942 PF01192 RNA polymerase Rpb6 Clo1313_0943 PF02441 Flavoprotein Clo1313_0943 PF04127 DNA / pantothenate metabolism flavoprotein Clo1313_0944 PF03129 Anticodon binding domain Clo1313_0944 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clo1313_0945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0945 PF00989 PAS fold Clo1313_0945 PF17203 Single cache domain 3 Clo1313_0945 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Clo1313_0948 PF04055 Radical SAM superfamily Clo1313_0948 PF13186 Iron-sulfur cluster-binding domain Clo1313_0949 PF02896 PEP-utilising enzyme, TIM barrel domain Clo1313_0949 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Clo1313_0949 PF00391 PEP-utilising enzyme, mobile domain Clo1313_0950 PF00331 Glycosyl hydrolase family 10 Clo1313_0950 PF00395 S-layer homology domain Clo1313_0950 PF06452 Carbohydrate family 9 binding domain-like Clo1313_0950 PF02018 Carbohydrate binding domain Clo1313_0952 PF07883 Cupin domain Clo1313_0953 PF13638 PIN domain Clo1313_0953 PF02562 PhoH-like protein Clo1313_0954 PF00534 Glycosyl transferases group 1 Clo1313_0954 PF13439 Glycosyltransferase Family 4 Clo1313_0955 PF00753 Metallo-beta-lactamase superfamily Clo1313_0955 PF17770 Ribonuclease J C-terminal domain Clo1313_0955 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Clo1313_0956 PF05636 HIGH Nucleotidyl Transferase Clo1313_0959 PF14693 Ribosomal protein TL5, C-terminal domain Clo1313_0959 PF01386 Ribosomal L25p family Clo1313_0960 PF02277 Phosphoribosyltransferase Clo1313_0962 PF01812 5-formyltetrahydrofolate cyclo-ligase family Clo1313_0965 PF00072 Response regulator receiver domain Clo1313_0966 PF01676 Metalloenzyme superfamily Clo1313_0966 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Clo1313_0970 PF00486 Transcriptional regulatory protein, C terminal Clo1313_0970 PF00072 Response regulator receiver domain Clo1313_0971 PF00672 HAMP domain Clo1313_0971 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0971 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_0972 PF13180 PDZ domain Clo1313_0973 PF01966 HD domain Clo1313_0974 PF08323 Starch synthase catalytic domain Clo1313_0974 PF00534 Glycosyl transferases group 1 Clo1313_0975 PF00633 Helix-hairpin-helix motif Clo1313_0975 PF00730 HhH-GPD superfamily base excision DNA repair protein Clo1313_0976 PF00990 Diguanylate cyclase, GGDEF domain Clo1313_0978 PF04226 Transglycosylase associated protein Clo1313_0979 PF00830 Ribosomal L28 family Clo1313_0980 PF00271 Helicase conserved C-terminal domain Clo1313_0980 PF17191 RecG wedge domain Clo1313_0980 PF00270 DEAD/DEAH box helicase Clo1313_0982 PF01467 Cytidylyltransferase-like Clo1313_0984 PF07670 Nucleoside recognition Clo1313_0985 PF12791 Anti-sigma factor N-terminus Clo1313_0985 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Clo1313_0986 PF04542 Sigma-70 region 2 Clo1313_0987 PF03422 Carbohydrate binding module (family 6) Clo1313_0987 PF04616 Glycosyl hydrolases family 43 Clo1313_0990 PF05384 Sensor protein DegS Clo1313_0990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_0990 PF07730 Histidine kinase Clo1313_0991 PF00072 Response regulator receiver domain Clo1313_0991 PF00196 Bacterial regulatory proteins, luxR family Clo1313_0992 PF02743 Cache domain Clo1313_0992 PF00672 HAMP domain Clo1313_0992 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_0993 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Clo1313_0993 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Clo1313_0993 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Clo1313_0993 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Clo1313_0994 PF14579 Helix-hairpin-helix motif Clo1313_0994 PF02811 PHP domain Clo1313_0994 PF01336 OB-fold nucleic acid binding domain Clo1313_0994 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Clo1313_0994 PF07733 Bacterial DNA polymerase III alpha NTPase domain Clo1313_0995 PF02081 Tryptophan RNA-binding attenuator protein Clo1313_0997 PF00365 Phosphofructokinase Clo1313_0999 PF01066 CDP-alcohol phosphatidyltransferase Clo1313_1002 PF00933 Glycosyl hydrolase family 3 N terminal domain Clo1313_1002 PF01915 Glycosyl hydrolase family 3 C-terminal domain Clo1313_1002 PF14310 Fibronectin type III-like domain Clo1313_1007 PF00860 Permease family Clo1313_1008 PF00731 AIR carboxylase Clo1313_1009 PF00156 Phosphoribosyl transferase domain Clo1313_1010 PF00586 AIR synthase related protein, N-terminal domain Clo1313_1010 PF02769 AIR synthase related protein, C-terminal domain Clo1313_1011 PF00551 Formyl transferase Clo1313_1012 PF02142 MGS-like domain Clo1313_1012 PF01808 AICARFT/IMPCHase bienzyme Clo1313_1013 PF02844 Phosphoribosylglycinamide synthetase, N domain Clo1313_1013 PF02843 Phosphoribosylglycinamide synthetase, C domain Clo1313_1013 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Clo1313_1014 PF00535 Glycosyl transferase family 2 Clo1313_1016 PF01467 Cytidylyltransferase-like Clo1313_1017 PF01966 HD domain Clo1313_1020 PF08264 Anticodon-binding domain of tRNA Clo1313_1020 PF13603 Leucyl-tRNA synthetase, Domain 2 Clo1313_1020 PF09334 tRNA synthetases class I (M) Clo1313_1020 PF00133 tRNA synthetases class I (I, L, M and V) Clo1313_1021 PF00041 Fibronectin type III domain Clo1313_1021 PF00704 Glycosyl hydrolases family 18 Clo1313_1022 PF12729 Four helix bundle sensory module for signal transduction Clo1313_1022 PF00672 HAMP domain Clo1313_1022 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_1024 PF00501 AMP-binding enzyme Clo1313_1025 PF00768 D-alanyl-D-alanine carboxypeptidase Clo1313_1025 PF07943 Penicillin-binding protein 5, C-terminal domain Clo1313_1026 PF10531 SLBB domain Clo1313_1029 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clo1313_1029 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clo1313_1029 PF02824 TGS domain Clo1313_1029 PF03129 Anticodon binding domain Clo1313_1030 PF00303 Thymidylate synthase Clo1313_1031 PF00186 Dihydrofolate reductase Clo1313_1032 PF00707 Translation initiation factor IF-3, C-terminal domain Clo1313_1032 PF05198 Translation initiation factor IF-3, N-terminal domain Clo1313_1033 PF01632 Ribosomal protein L35 Clo1313_1034 PF00453 Ribosomal protein L20 Clo1313_1035 PF08032 RNA 2'-O ribose methyltransferase substrate binding Clo1313_1035 PF00588 SpoU rRNA Methylase family Clo1313_1036 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Clo1313_1036 PF10091 Putative glucoamylase Clo1313_1036 PF06165 Glycosyltransferase family 36 Clo1313_1039 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Clo1313_1040 PF07724 AAA domain (Cdc48 subfamily) Clo1313_1040 PF17871 AAA lid domain Clo1313_1040 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_1040 PF02861 Clp amino terminal domain, pathogenicity island component Clo1313_1040 PF10431 C-terminal, D2-small domain, of ClpB protein Clo1313_1041 PF02617 ATP-dependent Clp protease adaptor protein ClpS Clo1313_1042 PF01925 Sulfite exporter TauE/SafE Clo1313_1043 PF01925 Sulfite exporter TauE/SafE Clo1313_1046 PF00291 Pyridoxal-phosphate dependent enzyme Clo1313_1052 PF06798 PrkA serine protein kinase C-terminal domain Clo1313_1052 PF08298 PrkA AAA domain Clo1313_1053 PF04285 Protein of unknown function (DUF444) Clo1313_1054 PF04293 SpoVR like protein Clo1313_1056 PF01048 Phosphorylase superfamily Clo1313_1057 PF05221 S-adenosyl-L-homocysteine hydrolase Clo1313_1057 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Clo1313_1058 PF01979 Amidohydrolase family Clo1313_1066 PF00872 Transposase, Mutator family Clo1313_1068 PF13419 Haloacid dehalogenase-like hydrolase Clo1313_1070 PF00005 ABC transporter Clo1313_1073 PF07859 alpha/beta hydrolase fold Clo1313_1076 PF07726 ATPase family associated with various cellular activities (AAA) Clo1313_1076 PF17863 AAA lid domain Clo1313_1078 PF11992 Domain of unknown function (DUF3488) Clo1313_1078 PF13559 Domain of unknown function (DUF4129) Clo1313_1078 PF01841 Transglutaminase-like superfamily Clo1313_1080 PF08141 Small acid-soluble spore protein H family Clo1313_1082 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Clo1313_1082 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Clo1313_1082 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Clo1313_1083 PF13690 Chemotaxis phosphatase CheX Clo1313_1090 PF05173 Dihydrodipicolinate reductase, C-terminus Clo1313_1090 PF01113 Dihydrodipicolinate reductase, N-terminus Clo1313_1093 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Clo1313_1093 PF01871 AMMECR1 Clo1313_1095 PF02457 DisA bacterial checkpoint controller nucleotide-binding Clo1313_1098 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Clo1313_1098 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Clo1313_1098 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Clo1313_1098 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Clo1313_1099 PF01380 SIS domain Clo1313_1100 PF01022 Bacterial regulatory protein, arsR family Clo1313_1101 PF01758 Sodium Bile acid symporter family Clo1313_1102 PF01451 Low molecular weight phosphotyrosine protein phosphatase Clo1313_1106 PF00437 Type II/IV secretion system protein Clo1313_1106 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Clo1313_1107 PF00437 Type II/IV secretion system protein Clo1313_1108 PF00482 Type II secretion system (T2SS), protein F Clo1313_1109 PF00114 Pilin (bacterial filament) Clo1313_1109 PF07963 Prokaryotic N-terminal methylation motif Clo1313_1116 PF00574 Clp protease Clo1313_1118 PF09397 Ftsk gamma domain Clo1313_1118 PF17854 FtsK alpha domain Clo1313_1118 PF01580 FtsK/SpoIIIE family Clo1313_1119 PF11842 Domain of unknown function (DUF3362) Clo1313_1119 PF04055 Radical SAM superfamily Clo1313_1119 PF08497 Radical SAM N-terminal Clo1313_1120 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Clo1313_1120 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Clo1313_1122 PF01966 HD domain Clo1313_1122 PF00013 KH domain Clo1313_1122 PF12072 Domain of unknown function (DUF3552) Clo1313_1123 PF13277 YmdB-like protein Clo1313_1124 PF04232 Stage V sporulation protein S (SpoVS) Clo1313_1127 PF16363 GDP-mannose 4,6 dehydratase Clo1313_1128 PF00534 Glycosyl transferases group 1 Clo1313_1128 PF13439 Glycosyltransferase Family 4 Clo1313_1130 PF01636 Phosphotransferase enzyme family Clo1313_1134 PF00483 Nucleotidyl transferase Clo1313_1138 PF05949 Bacterial protein of unknown function (DUF881) Clo1313_1139 PF01522 Polysaccharide deacetylase Clo1313_1140 PF07873 YabP family Clo1313_1142 PF02562 PhoH-like protein Clo1313_1143 PF01966 HD domain Clo1313_1143 PF07698 7TM receptor with intracellular HD hydrolase Clo1313_1143 PF07697 7TM-HD extracellular Clo1313_1144 PF02130 Uncharacterized protein family UPF0054 Clo1313_1145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clo1313_1146 PF01926 50S ribosome-binding GTPase Clo1313_1146 PF07650 KH domain Clo1313_1148 PF02565 Recombination protein O C terminal Clo1313_1148 PF11967 Recombination protein O N terminal Clo1313_1150 PF00266 Aminotransferase class-V Clo1313_1151 PF02568 Thiamine biosynthesis protein (ThiI) Clo1313_1151 PF02926 THUMP domain Clo1313_1152 PF04294 VanW like protein Clo1313_1155 PF00464 Serine hydroxymethyltransferase Clo1313_1156 PF04024 PspC domain Clo1313_1157 PF01841 Transglutaminase-like superfamily Clo1313_1157 PF13559 Domain of unknown function (DUF4129) Clo1313_1157 PF11992 Domain of unknown function (DUF3488) Clo1313_1159 PF17863 AAA lid domain Clo1313_1159 PF07726 ATPase family associated with various cellular activities (AAA) Clo1313_1160 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Clo1313_1160 PF00056 lactate/malate dehydrogenase, NAD binding domain Clo1313_1161 PF00994 Probable molybdopterin binding domain Clo1313_1161 PF18146 Damage-inducible protein CinA KH domain Clo1313_1161 PF02464 Competence-damaged protein Clo1313_1162 PF03023 Lipid II flippase MurJ Clo1313_1163 PF00154 recA bacterial DNA recombination protein Clo1313_1164 PF02631 RecX family Clo1313_1165 PF01694 Rhomboid family Clo1313_1172 PF08245 Mur ligase middle domain Clo1313_1173 PF06144 DNA polymerase III, delta subunit Clo1313_1174 PF01649 Ribosomal protein S20 Clo1313_1175 PF03418 Germination protease Clo1313_1176 PF11741 AMIN domain Clo1313_1176 PF01520 N-acetylmuramoyl-L-alanine amidase Clo1313_1178 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Clo1313_1178 PF12826 Helix-hairpin-helix motif Clo1313_1178 PF01653 NAD-dependent DNA ligase adenylation domain Clo1313_1178 PF00533 BRCA1 C Terminus (BRCT) domain Clo1313_1178 PF03120 NAD-dependent DNA ligase OB-fold domain Clo1313_1181 PF02686 Glu-tRNAGln amidotransferase C subunit Clo1313_1182 PF01425 Amidase Clo1313_1183 PF02637 GatB domain Clo1313_1183 PF02934 GatB/GatE catalytic domain Clo1313_1185 PF01515 Phosphate acetyl/butaryl transferase Clo1313_1186 PF00871 Acetokinase family Clo1313_1188 PF01783 Ribosomal L32p protein family Clo1313_1190 PF01926 50S ribosome-binding GTPase Clo1313_1190 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Clo1313_1191 PF02660 Glycerol-3-phosphate acyltransferase Clo1313_1192 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Clo1313_1192 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Clo1313_1193 PF09547 Stage IV sporulation protein A (spore_IV_A) Clo1313_1194 PF01547 Bacterial extracellular solute-binding protein Clo1313_1195 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_1196 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_1198 PF01520 N-acetylmuramoyl-L-alanine amidase Clo1313_1198 PF04122 Putative cell wall binding repeat 2 Clo1313_1201 PF00488 MutS domain V Clo1313_1201 PF01713 Smr domain Clo1313_1202 PF01594 AI-2E family transporter Clo1313_1203 PF04545 Sigma-70, region 4 Clo1313_1203 PF04542 Sigma-70 region 2 Clo1313_1204 PF00905 Penicillin binding protein transpeptidase domain Clo1313_1204 PF03717 Penicillin-binding Protein dimerisation domain Clo1313_1205 PF16325 Peptidase family U32 C-terminal domain Clo1313_1205 PF01136 Peptidase family U32 Clo1313_1206 PF01596 O-methyltransferase Clo1313_1207 PF02618 YceG-like family Clo1313_1208 PF00009 Elongation factor Tu GTP binding domain Clo1313_1208 PF14492 Elongation Factor G, domain II Clo1313_1208 PF00679 Elongation factor G C-terminus Clo1313_1208 PF03144 Elongation factor Tu domain 2 Clo1313_1209 PF00318 Ribosomal protein S2 Clo1313_1210 PF00889 Elongation factor TS Clo1313_1211 PF00696 Amino acid kinase family Clo1313_1212 PF01765 Ribosome recycling factor Clo1313_1214 PF01255 Putative undecaprenyl diphosphate synthase Clo1313_1216 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Clo1313_1216 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Clo1313_1216 PF13288 DXP reductoisomerase C-terminal domain Clo1313_1217 PF13180 PDZ domain Clo1313_1217 PF02163 Peptidase family M50 Clo1313_1218 PF04551 GcpE protein Clo1313_1219 PF01336 OB-fold nucleic acid binding domain Clo1313_1219 PF11490 DNA polymerase III polC-type N-terminus II Clo1313_1219 PF07733 Bacterial DNA polymerase III alpha NTPase domain Clo1313_1219 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Clo1313_1219 PF02811 PHP domain Clo1313_1219 PF00929 Exonuclease Clo1313_1219 PF14579 Helix-hairpin-helix motif Clo1313_1221 PF17384 RimP C-terminal SH3 domain Clo1313_1221 PF02576 RimP N-terminal domain Clo1313_1222 PF13184 NusA-like KH domain Clo1313_1222 PF00575 S1 RNA binding domain Clo1313_1222 PF08529 NusA N-terminal domain Clo1313_1223 PF04296 Protein of unknown function (DUF448) Clo1313_1224 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Clo1313_1225 PF04760 Translation initiation factor IF-2, N-terminal region Clo1313_1225 PF11987 Translation-initiation factor 2 Clo1313_1225 PF00009 Elongation factor Tu GTP binding domain Clo1313_1226 PF02033 Ribosome-binding factor A Clo1313_1227 PF02272 DHHA1 domain Clo1313_1227 PF01368 DHH family Clo1313_1228 PF16198 tRNA pseudouridylate synthase B C-terminal domain Clo1313_1228 PF01509 TruB family pseudouridylate synthase (N terminal domain) Clo1313_1229 PF06574 FAD synthetase Clo1313_1229 PF01687 Riboflavin kinase Clo1313_1231 PF05193 Peptidase M16 inactive domain Clo1313_1232 PF00675 Insulinase (Peptidase family M16) Clo1313_1232 PF05193 Peptidase M16 inactive domain Clo1313_1233 PF01790 Prolipoprotein diacylglyceryl transferase Clo1313_1235 PF01098 Cell cycle protein Clo1313_1236 PF02381 MraZ protein, putative antitoxin-like Clo1313_1237 PF01795 MraW methylase family Clo1313_1239 PF03717 Penicillin-binding Protein dimerisation domain Clo1313_1239 PF00905 Penicillin binding protein transpeptidase domain Clo1313_1239 PF03793 PASTA domain Clo1313_1240 PF02875 Mur ligase family, glutamate ligase domain Clo1313_1240 PF08245 Mur ligase middle domain Clo1313_1240 PF01225 Mur ligase family, catalytic domain Clo1313_1241 PF02875 Mur ligase family, glutamate ligase domain Clo1313_1241 PF01225 Mur ligase family, catalytic domain Clo1313_1241 PF08245 Mur ligase middle domain Clo1313_1242 PF00953 Glycosyl transferase family 4 Clo1313_1243 PF01098 Cell cycle protein Clo1313_1244 PF03033 Glycosyltransferase family 28 N-terminal domain Clo1313_1244 PF04101 Glycosyltransferase family 28 C-terminal domain Clo1313_1245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clo1313_1248 PF00872 Transposase, Mutator family Clo1313_1249 PF00580 UvrD/REP helicase N-terminal domain Clo1313_1249 PF13361 UvrD-like helicase C-terminal domain Clo1313_1251 PF12557 Cob(I)alamin adenosyltransferase N terminal Clo1313_1251 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Clo1313_1252 PF00696 Amino acid kinase family Clo1313_1252 PF13840 ACT domain Clo1313_1253 PF05173 Dihydrodipicolinate reductase, C-terminus Clo1313_1253 PF01113 Dihydrodipicolinate reductase, N-terminus Clo1313_1254 PF00701 Dihydrodipicolinate synthetase family Clo1313_1255 PF02774 Semialdehyde dehydrogenase, dimerisation domain Clo1313_1255 PF01118 Semialdehyde dehydrogenase, NAD binding domain Clo1313_1256 PF04122 Putative cell wall binding repeat 2 Clo1313_1256 PF08486 Stage II sporulation protein Clo1313_1257 PF02547 Queuosine biosynthesis protein Clo1313_1258 PF01702 Queuine tRNA-ribosyltransferase Clo1313_1259 PF02699 Preprotein translocase subunit Clo1313_1262 PF00156 Phosphoribosyl transferase domain Clo1313_1264 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Clo1313_1264 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Clo1313_1265 PF01979 Amidohydrolase family Clo1313_1266 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Clo1313_1267 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Clo1313_1267 PF00117 Glutamine amidotransferase class-I Clo1313_1268 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Clo1313_1268 PF02142 MGS-like domain Clo1313_1268 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Clo1313_1269 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Clo1313_1270 PF01180 Dihydroorotate dehydrogenase Clo1313_1271 PF00300 Histidine phosphatase superfamily (branch 1) Clo1313_1275 PF04055 Radical SAM superfamily Clo1313_1275 PF18693 TRAM domain Clo1313_1275 PF00919 Uncharacterized protein family UPF0004 Clo1313_1276 PF01066 CDP-alcohol phosphatidyltransferase Clo1313_1279 PF03061 Thioesterase superfamily Clo1313_1280 PF02504 Fatty acid synthesis protein Clo1313_1281 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Clo1313_1281 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Clo1313_1282 PF00698 Acyl transferase domain Clo1313_1284 PF00550 Phosphopantetheine attachment site Clo1313_1285 PF00109 Beta-ketoacyl synthase, N-terminal domain Clo1313_1285 PF02801 Beta-ketoacyl synthase, C-terminal domain Clo1313_1286 PF00035 Double-stranded RNA binding motif Clo1313_1286 PF14622 Ribonuclease-III-like Clo1313_1288 PF04232 Stage V sporulation protein S (SpoVS) Clo1313_1289 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Clo1313_1290 PF02463 RecF/RecN/SMC N terminal domain Clo1313_1290 PF06470 SMC proteins Flexible Hinge Domain Clo1313_1291 PF00448 SRP54-type protein, GTPase domain Clo1313_1291 PF02881 SRP54-type protein, helical bundle domain Clo1313_1295 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain Clo1313_1301 PF00749 tRNA synthetases class I (E and Q), catalytic domain Clo1313_1301 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Clo1313_1305 PF00331 Glycosyl hydrolase family 10 Clo1313_1305 PF00404 Dockerin type I domain Clo1313_1305 PF02018 Carbohydrate binding domain Clo1313_1305 PF00756 Putative esterase Clo1313_1306 PF02578 Multi-copper polyphenol oxidoreductase laccase Clo1313_1308 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Clo1313_1309 PF01252 Signal peptidase (SPase) II Clo1313_1310 PF00849 RNA pseudouridylate synthase Clo1313_1310 PF01479 S4 domain Clo1313_1313 PF01966 HD domain Clo1313_1313 PF00013 KH domain Clo1313_1313 PF12072 Domain of unknown function (DUF3552) Clo1313_1314 PF02355 Protein export membrane protein Clo1313_1314 PF07549 SecD/SecF GG Motif Clo1313_1315 PF07549 SecD/SecF GG Motif Clo1313_1315 PF02355 Protein export membrane protein Clo1313_1316 PF02548 Ketopantoate hydroxymethyltransferase Clo1313_1317 PF02569 Pantoate-beta-alanine ligase Clo1313_1318 PF02261 Aspartate decarboxylase Clo1313_1320 PF01966 HD domain Clo1313_1320 PF11871 Domain of unknown function (DUF3391) Clo1313_1321 PF01966 HD domain Clo1313_1321 PF13286 Phosphohydrolase-associated domain Clo1313_1323 PF01807 CHC2 zinc finger Clo1313_1323 PF10410 DnaB-helicase binding domain of primase Clo1313_1323 PF08275 DNA primase catalytic core, N-terminal domain Clo1313_1324 PF00140 Sigma-70 factor, region 1.2 Clo1313_1324 PF03979 Sigma-70 factor, region 1.1 Clo1313_1324 PF04542 Sigma-70 region 2 Clo1313_1324 PF04539 Sigma-70 region 3 Clo1313_1324 PF04545 Sigma-70, region 4 Clo1313_1327 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Clo1313_1328 PF01784 NIF3 (NGG1p interacting factor 3) Clo1313_1329 PF00072 Response regulator receiver domain Clo1313_1330 PF08281 Sigma-70, region 4 Clo1313_1330 PF04542 Sigma-70 region 2 Clo1313_1334 PF01367 5'-3' exonuclease, C-terminal SAM fold Clo1313_1334 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Clo1313_1334 PF00476 DNA polymerase family A Clo1313_1335 PF01121 Dephospho-CoA kinase Clo1313_1338 PF00892 EamA-like transporter family Clo1313_1339 PF00990 Diguanylate cyclase, GGDEF domain Clo1313_1340 PF18152 DAHP synthase ferredoxin-like domain Clo1313_1340 PF00793 DAHP synthetase I family Clo1313_1341 PF01584 CheW-like domain Clo1313_1342 PF01926 50S ribosome-binding GTPase Clo1313_1342 PF06071 Protein of unknown function (DUF933) Clo1313_1344 PF04715 Anthranilate synthase component I, N terminal region Clo1313_1344 PF00425 chorismate binding enzyme Clo1313_1345 PF00591 Glycosyl transferase family, a/b domain Clo1313_1345 PF00117 Glutamine amidotransferase class-I Clo1313_1345 PF02885 Glycosyl transferase family, helical bundle domain Clo1313_1346 PF02885 Glycosyl transferase family, helical bundle domain Clo1313_1346 PF00591 Glycosyl transferase family, a/b domain Clo1313_1347 PF00218 Indole-3-glycerol phosphate synthase Clo1313_1348 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Clo1313_1357 PF00120 Glutamine synthetase, catalytic domain Clo1313_1357 PF18318 Glutamine synthetase C-terminal domain Clo1313_1357 PF12437 Glutamine synthetase type III N terminal Clo1313_1359 PF03816 Cell envelope-related transcriptional attenuator domain Clo1313_1360 PF02915 Rubrerythrin Clo1313_1362 PF12127 SigmaW regulon antibacterial Clo1313_1363 PF01957 NfeD-like C-terminal, partner-binding Clo1313_1363 PF01972 Serine dehydrogenase proteinase Clo1313_1364 PF01063 Amino-transferase class IV Clo1313_1366 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Clo1313_1366 PF01488 Shikimate / quinate 5-dehydrogenase Clo1313_1366 PF08501 Shikimate dehydrogenase substrate binding domain Clo1313_1367 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Clo1313_1367 PF00437 Type II/IV secretion system protein Clo1313_1368 PF06750 Bacterial Peptidase A24 N-terminal domain Clo1313_1368 PF01478 Type IV leader peptidase family Clo1313_1370 PF01261 Xylose isomerase-like TIM barrel Clo1313_1371 PF01220 Dehydroquinase class II Clo1313_1372 PF01321 Creatinase/Prolidase N-terminal domain Clo1313_1372 PF00557 Metallopeptidase family M24 Clo1313_1373 PF01132 Elongation factor P (EF-P) OB domain Clo1313_1373 PF08207 Elongation factor P (EF-P) KOW-like domain Clo1313_1373 PF09285 Elongation factor P, C-terminal Clo1313_1375 PF01797 Transposase IS200 like Clo1313_1378 PF06686 Stage III sporulation protein AC/AD protein family Clo1313_1379 PF06686 Stage III sporulation protein AC/AD protein family Clo1313_1380 PF09546 Stage III sporulation protein AE (spore_III_AE) Clo1313_1384 PF03780 Asp23 family, cell envelope-related function Clo1313_1387 PF01029 NusB family Clo1313_1388 PF02601 Exonuclease VII, large subunit Clo1313_1388 PF13742 OB-fold nucleic acid binding domain Clo1313_1389 PF02609 Exonuclease VII small subunit Clo1313_1390 PF00348 Polyprenyl synthetase Clo1313_1391 PF02681 Divergent PAP2 family Clo1313_1393 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Clo1313_1393 PF02779 Transketolase, pyrimidine binding domain Clo1313_1393 PF02780 Transketolase, C-terminal domain Clo1313_1394 PF01728 FtsJ-like methyltransferase Clo1313_1394 PF01479 S4 domain Clo1313_1396 PF00759 Glycosyl hydrolase family 9 Clo1313_1396 PF02927 Cellulase N-terminal ig-like domain Clo1313_1396 PF00404 Dockerin type I domain Clo1313_1398 PF00942 Cellulose binding domain Clo1313_1398 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_1398 PF12891 Glycoside hydrolase family 44 Clo1313_1401 PF00005 ABC transporter Clo1313_1401 PF13732 Domain of unknown function (DUF4162) Clo1313_1404 PF00990 Diguanylate cyclase, GGDEF domain Clo1313_1405 PF01513 ATP-NAD kinase Clo1313_1406 PF01316 Arginine repressor, DNA binding domain Clo1313_1406 PF02863 Arginine repressor, C-terminal domain Clo1313_1407 PF02463 RecF/RecN/SMC N terminal domain Clo1313_1408 PF17820 PDZ domain Clo1313_1408 PF05580 SpoIVB peptidase S55 Clo1313_1409 PF00072 Response regulator receiver domain Clo1313_1409 PF08769 Sporulation initiation factor Spo0A C terminal Clo1313_1410 PF00072 Response regulator receiver domain Clo1313_1411 PF01584 CheW-like domain Clo1313_1411 PF02895 Signal transducing histidine kinase, homodimeric domain Clo1313_1411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1411 PF01627 Hpt domain Clo1313_1411 PF07194 P2 response regulator binding domain Clo1313_1412 PF01584 CheW-like domain Clo1313_1413 PF01739 CheR methyltransferase, SAM binding domain Clo1313_1413 PF03705 CheR methyltransferase, all-alpha domain Clo1313_1414 PF01339 CheB methylesterase Clo1313_1414 PF00072 Response regulator receiver domain Clo1313_1415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Clo1313_1415 PF00072 Response regulator receiver domain Clo1313_1415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1415 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_1415 PF00672 HAMP domain Clo1313_1415 PF01627 Hpt domain Clo1313_1416 PF00072 Response regulator receiver domain Clo1313_1416 PF00486 Transcriptional regulatory protein, C terminal Clo1313_1418 PF00849 RNA pseudouridylate synthase Clo1313_1421 PF00872 Transposase, Mutator family Clo1313_1422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1422 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_1422 PF00989 PAS fold Clo1313_1422 PF16736 Single Cache-like Clo1313_1423 PF00486 Transcriptional regulatory protein, C terminal Clo1313_1423 PF00072 Response regulator receiver domain Clo1313_1424 PF00404 Dockerin type I domain Clo1313_1424 PF13472 GDSL-like Lipase/Acylhydrolase family Clo1313_1425 PF00657 GDSL-like Lipase/Acylhydrolase Clo1313_1425 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_1425 PF17996 Carbohydrate esterase 2 N-terminal Clo1313_1425 PF00404 Dockerin type I domain Clo1313_1426 PF02903 Alpha amylase, N-terminal ig-like domain Clo1313_1426 PF00128 Alpha amylase, catalytic domain Clo1313_1427 PF06838 Methionine gamma-lyase Clo1313_1429 PF01168 Alanine racemase, N-terminal domain Clo1313_1430 PF04472 Cell division protein SepF Clo1313_1432 PF01479 S4 domain Clo1313_1432 PF17774 Putative RNA-binding domain in YlmH Clo1313_1433 PF05103 DivIVA protein Clo1313_1434 PF08264 Anticodon-binding domain of tRNA Clo1313_1434 PF00133 tRNA synthetases class I (I, L, M and V) Clo1313_1434 PF06827 Zinc finger found in FPG and IleRS Clo1313_1435 PF01761 3-dehydroquinate synthase Clo1313_1438 PF04055 Radical SAM superfamily Clo1313_1438 PF01938 TRAM domain Clo1313_1438 PF00919 Uncharacterized protein family UPF0004 Clo1313_1440 PF02743 Cache domain Clo1313_1440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_1440 PF00672 HAMP domain Clo1313_1442 PF13419 Haloacid dehalogenase-like hydrolase Clo1313_1443 PF00188 Cysteine-rich secretory protein family Clo1313_1445 PF01624 MutS domain I Clo1313_1445 PF05188 MutS domain II Clo1313_1445 PF05192 MutS domain III Clo1313_1445 PF05190 MutS family domain IV Clo1313_1445 PF00488 MutS domain V Clo1313_1446 PF01119 DNA mismatch repair protein, C-terminal domain Clo1313_1446 PF08676 MutL C terminal dimerisation domain Clo1313_1448 PF17209 Hfq protein Clo1313_1449 PF01726 LexA DNA binding domain Clo1313_1449 PF00717 Peptidase S24-like Clo1313_1451 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Clo1313_1452 PF00448 SRP54-type protein, GTPase domain Clo1313_1452 PF02881 SRP54-type protein, helical bundle domain Clo1313_1452 PF02978 Signal peptide binding domain Clo1313_1453 PF00886 Ribosomal protein S16 Clo1313_1455 PF01782 RimM N-terminal domain Clo1313_1455 PF05239 PRC-barrel domain Clo1313_1456 PF01746 tRNA (Guanine-1)-methyltransferase Clo1313_1457 PF01245 Ribosomal protein L19 Clo1313_1458 PF10502 Signal peptidase, peptidase S26 Clo1313_1459 PF01926 50S ribosome-binding GTPase Clo1313_1461 PF01351 Ribonuclease HII Clo1313_1464 PF02021 Uncharacterised protein family UPF0102 Clo1313_1465 PF04002 RadC-like JAB domain Clo1313_1466 PF01244 Membrane dipeptidase (Peptidase family M19) Clo1313_1467 PF00155 Aminotransferase class I and II Clo1313_1472 PF00005 ABC transporter Clo1313_1472 PF08402 TOBE domain Clo1313_1473 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_1474 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_1475 PF13416 Bacterial extracellular solute-binding protein Clo1313_1477 PF00942 Cellulose binding domain Clo1313_1477 PF00404 Dockerin type I domain Clo1313_1477 PF00759 Glycosyl hydrolase family 9 Clo1313_1478 PF17820 PDZ domain Clo1313_1478 PF03572 Peptidase family S41 Clo1313_1478 PF01471 Putative peptidoglycan binding domain Clo1313_1479 PF01554 MatE Clo1313_1481 PF10397 Adenylosuccinate lyase C-terminus Clo1313_1481 PF00206 Lyase Clo1313_1482 PF07702 UTRA domain Clo1313_1482 PF00392 Bacterial regulatory proteins, gntR family Clo1313_1484 PF00403 Heavy-metal-associated domain Clo1313_1486 PF01648 4'-phosphopantetheinyl transferase superfamily Clo1313_1487 PF00395 S-layer homology domain Clo1313_1487 PF00963 Cohesin domain Clo1313_1488 PF00395 S-layer homology domain Clo1313_1488 PF00963 Cohesin domain Clo1313_1491 PF01264 Chorismate synthase Clo1313_1492 PF01202 Shikimate kinase Clo1313_1494 PF00404 Dockerin type I domain Clo1313_1494 PF01270 Glycosyl hydrolases family 8 Clo1313_1495 PF02899 Phage integrase, N-terminal SAM-like domain Clo1313_1495 PF00589 Phage integrase family Clo1313_1497 PF02127 Aminopeptidase I zinc metalloprotease (M18) Clo1313_1498 PF01966 HD domain Clo1313_1500 PF00579 tRNA synthetases class I (W and Y) Clo1313_1502 PF01592 NifU-like N terminal domain Clo1313_1503 PF00266 Aminotransferase class-V Clo1313_1504 PF02082 Transcriptional regulator Clo1313_1507 PF01739 CheR methyltransferase, SAM binding domain Clo1313_1507 PF03705 CheR methyltransferase, all-alpha domain Clo1313_1508 PF00334 Nucleoside diphosphate kinase Clo1313_1509 PF02675 S-adenosylmethionine decarboxylase Clo1313_1510 PF00575 S1 RNA binding domain Clo1313_1510 PF02401 LytB protein Clo1313_1511 PF01553 Acyltransferase Clo1313_1512 PF02224 Cytidylate kinase Clo1313_1517 PF00300 Histidine phosphatase superfamily (branch 1) Clo1313_1518 PF01418 Helix-turn-helix domain, rpiR family Clo1313_1518 PF01380 SIS domain Clo1313_1523 PF00364 Biotin-requiring enzyme Clo1313_1523 PF00682 HMGL-like Clo1313_1523 PF02436 Conserved carboxylase domain Clo1313_1524 PF00364 Biotin-requiring enzyme Clo1313_1526 PF01039 Carboxyl transferase domain Clo1313_1528 PF06962 Putative rRNA methylase Clo1313_1529 PF00491 Arginase family Clo1313_1530 PF17284 Spermidine synthase tetramerisation domain Clo1313_1531 PF00849 RNA pseudouridylate synthase Clo1313_1531 PF01479 S4 domain Clo1313_1532 PF09579 Sporulation protein YtfJ (Spore_YtfJ) Clo1313_1535 PF04079 Segregation and condensation complex subunit ScpB Clo1313_1536 PF02616 Segregation and condensation protein ScpA Clo1313_1537 PF00579 tRNA synthetases class I (W and Y) Clo1313_1538 PF02163 Peptidase family M50 Clo1313_1539 PF01368 DHH family Clo1313_1539 PF02272 DHHA1 domain Clo1313_1539 PF12627 Probable RNA and SrmB- binding site of polymerase A Clo1313_1539 PF01743 Poly A polymerase head domain Clo1313_1539 PF00571 CBS domain Clo1313_1540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Clo1313_1540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Clo1313_1542 PF00571 CBS domain Clo1313_1542 PF00478 IMP dehydrogenase / GMP reductase domain Clo1313_1544 PF07943 Penicillin-binding protein 5, C-terminal domain Clo1313_1544 PF00768 D-alanyl-D-alanine carboxypeptidase Clo1313_1545 PF02885 Glycosyl transferase family, helical bundle domain Clo1313_1545 PF00591 Glycosyl transferase family, a/b domain Clo1313_1545 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Clo1313_1546 PF01676 Metalloenzyme superfamily Clo1313_1547 PF00589 Phage integrase family Clo1313_1547 PF02899 Phage integrase, N-terminal SAM-like domain Clo1313_1548 PF01944 Stage II sporulation protein M Clo1313_1549 PF00293 NUDIX domain Clo1313_1550 PF00075 RNase H Clo1313_1551 PF03807 NADP oxidoreductase coenzyme F420-dependent Clo1313_1551 PF14748 Pyrroline-5-carboxylate reductase dimerisation Clo1313_1557 PF03323 Bacillus/Clostridium GerA spore germination protein Clo1313_1558 PF01145 SPFH domain / Band 7 family Clo1313_1559 PF01145 SPFH domain / Band 7 family Clo1313_1560 PF06725 3D domain Clo1313_1560 PF03990 G5-linked-Ubiquitin-like domain Clo1313_1560 PF07501 G5 domain Clo1313_1563 PF00722 Glycosyl hydrolases family 16 Clo1313_1563 PF00404 Dockerin type I domain Clo1313_1564 PF00404 Dockerin type I domain Clo1313_1570 PF00266 Aminotransferase class-V Clo1313_1571 PF06968 Biotin and Thiamin Synthesis associated domain Clo1313_1571 PF04055 Radical SAM superfamily Clo1313_1573 PF01361 Tautomerase enzyme Clo1313_1578 PF00749 tRNA synthetases class I (E and Q), catalytic domain Clo1313_1581 PF02310 B12 binding domain Clo1313_1581 PF02607 B12 binding domain Clo1313_1581 PF02965 Vitamin B12 dependent methionine synthase, activation domain Clo1313_1581 PF00809 Pterin binding enzyme Clo1313_1581 PF02574 Homocysteine S-methyltransferase Clo1313_1587 PF00404 Dockerin type I domain Clo1313_1587 PF00722 Glycosyl hydrolases family 16 Clo1313_1588 PF00128 Alpha amylase, catalytic domain Clo1313_1588 PF02806 Alpha amylase, C-terminal all-beta domain Clo1313_1588 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Clo1313_1589 PF01580 FtsK/SpoIIIE family Clo1313_1589 PF12538 DNA transporter Clo1313_1593 PF03793 PASTA domain Clo1313_1593 PF00069 Protein kinase domain Clo1313_1599 PF00437 Type II/IV secretion system protein Clo1313_1599 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Clo1313_1603 PF00759 Glycosyl hydrolase family 9 Clo1313_1603 PF00404 Dockerin type I domain Clo1313_1603 PF00942 Cellulose binding domain Clo1313_1604 PF00942 Cellulose binding domain Clo1313_1604 PF12891 Glycoside hydrolase family 44 Clo1313_1605 PF01258 Prokaryotic dksA/traR C4-type zinc finger Clo1313_1606 PF01048 Phosphorylase superfamily Clo1313_1607 PF01008 Initiation factor 2 subunit family Clo1313_1608 PF02742 Iron dependent repressor, metal binding and dimerisation domain Clo1313_1608 PF01325 Iron dependent repressor, N-terminal DNA binding domain Clo1313_1610 PF17910 FeoB cytosolic helical domain Clo1313_1610 PF04023 FeoA domain Clo1313_1610 PF07664 Ferrous iron transport protein B C terminus Clo1313_1610 PF02421 Ferrous iron transport protein B Clo1313_1610 PF07670 Nucleoside recognition Clo1313_1612 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_1612 PF12002 MgsA AAA+ ATPase C terminal Clo1313_1612 PF16193 AAA C-terminal domain Clo1313_1614 PF14535 AMP-binding enzyme C-terminal domain Clo1313_1614 PF00501 AMP-binding enzyme Clo1313_1616 PF00037 4Fe-4S binding domain Clo1313_1616 PF12798 4Fe-4S binding domain Clo1313_1617 PF00474 Sodium:solute symporter family Clo1313_1618 PF10996 Beta-Casp domain Clo1313_1618 PF00753 Metallo-beta-lactamase superfamily Clo1313_1618 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Clo1313_1619 PF00155 Aminotransferase class I and II Clo1313_1620 PF05343 M42 glutamyl aminopeptidase Clo1313_1621 PF05343 M42 glutamyl aminopeptidase Clo1313_1622 PF05343 M42 glutamyl aminopeptidase Clo1313_1624 PF00877 NlpC/P60 family Clo1313_1627 PF01964 Radical SAM ThiC family Clo1313_1628 PF02581 Thiamine monophosphate synthase Clo1313_1629 PF00581 Rhodanese-like domain Clo1313_1629 PF00899 ThiF family Clo1313_1630 PF06968 Biotin and Thiamin Synthesis associated domain Clo1313_1630 PF04055 Radical SAM superfamily Clo1313_1631 PF05690 Thiazole biosynthesis protein ThiG Clo1313_1632 PF02597 ThiS family Clo1313_1632 PF05690 Thiazole biosynthesis protein ThiG Clo1313_1633 PF01926 50S ribosome-binding GTPase Clo1313_1638 PF13649 Methyltransferase domain Clo1313_1643 PF07508 Recombinase Clo1313_1643 PF00239 Resolvase, N terminal domain Clo1313_1643 PF13408 Recombinase zinc beta ribbon domain Clo1313_1645 PF00270 DEAD/DEAH box helicase Clo1313_1645 PF08494 DEAD/H associated Clo1313_1645 PF00271 Helicase conserved C-terminal domain Clo1313_1648 PF02796 Helix-turn-helix domain of resolvase Clo1313_1648 PF00239 Resolvase, N terminal domain Clo1313_1654 PF00158 Sigma-54 interaction domain Clo1313_1654 PF00072 Response regulator receiver domain Clo1313_1655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1655 PF08447 PAS fold Clo1313_1655 PF08448 PAS fold Clo1313_1656 PF05670 NFACT protein RNA binding domain Clo1313_1657 PF00155 Aminotransferase class I and II Clo1313_1658 PF00881 Nitroreductase family Clo1313_1659 PF03442 Carbohydrate binding domain X2 Clo1313_1659 PF00759 Glycosyl hydrolase family 9 Clo1313_1659 PF00942 Cellulose binding domain Clo1313_1661 PF00834 Ribulose-phosphate 3 epimerase family Clo1313_1662 PF03193 RsgA GTPase Clo1313_1662 PF16745 RsgA N-terminal domain Clo1313_1663 PF00069 Protein kinase domain Clo1313_1663 PF03793 PASTA domain Clo1313_1665 PF04055 Radical SAM superfamily Clo1313_1666 PF01029 NusB family Clo1313_1666 PF01189 16S rRNA methyltransferase RsmB/F Clo1313_1667 PF04298 Putative neutral zinc metallopeptidase Clo1313_1669 PF02911 Formyl transferase, C-terminal domain Clo1313_1669 PF00551 Formyl transferase Clo1313_1670 PF01327 Polypeptide deformylase Clo1313_1671 PF04851 Type III restriction enzyme, res subunit Clo1313_1671 PF00271 Helicase conserved C-terminal domain Clo1313_1671 PF17764 3′ DNA-binding domain (3′BD) Clo1313_1671 PF18074 Primosomal protein N C-terminal domain Clo1313_1671 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Clo1313_1673 PF00348 Polyprenyl synthetase Clo1313_1676 PF02424 ApbE family Clo1313_1677 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_1680 PF01522 Polysaccharide deacetylase Clo1313_1681 PF00733 Asparagine synthase Clo1313_1681 PF13537 Glutamine amidotransferase domain Clo1313_1682 PF05698 Bacterial trigger factor protein (TF) C-terminus Clo1313_1683 PF00586 AIR synthase related protein, N-terminal domain Clo1313_1683 PF02769 AIR synthase related protein, C-terminal domain Clo1313_1683 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Clo1313_1684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Clo1313_1684 PF03466 LysR substrate binding domain Clo1313_1686 PF13193 AMP-binding enzyme C-terminal domain Clo1313_1686 PF00501 AMP-binding enzyme Clo1313_1687 PF00183 Hsp90 protein Clo1313_1688 PF00950 ABC 3 transport family Clo1313_1689 PF00005 ABC transporter Clo1313_1690 PF01297 Zinc-uptake complex component A periplasmic Clo1313_1691 PF01475 Ferric uptake regulator family Clo1313_1694 PF00942 Cellulose binding domain Clo1313_1694 PF00404 Dockerin type I domain Clo1313_1694 PF00759 Glycosyl hydrolase family 9 Clo1313_1696 PF01321 Creatinase/Prolidase N-terminal domain Clo1313_1696 PF00557 Metallopeptidase family M24 Clo1313_1697 PF00005 ABC transporter Clo1313_1697 PF12704 MacB-like periplasmic core domain Clo1313_1698 PF00005 ABC transporter Clo1313_1699 PF00672 HAMP domain Clo1313_1699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1699 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_1700 PF00486 Transcriptional regulatory protein, C terminal Clo1313_1700 PF00072 Response regulator receiver domain Clo1313_1701 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_1701 PF00404 Dockerin type I domain Clo1313_1703 PF00005 ABC transporter Clo1313_1703 PF00664 ABC transporter transmembrane region Clo1313_1703 PF03412 Peptidase C39 family Clo1313_1708 PF01476 LysM domain Clo1313_1708 PF05257 CHAP domain Clo1313_1710 PF01797 Transposase IS200 like Clo1313_1711 PF16736 Single Cache-like Clo1313_1711 PF00989 PAS fold Clo1313_1711 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_1711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1712 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Clo1313_1715 PF02811 PHP domain Clo1313_1715 PF14579 Helix-hairpin-helix motif Clo1313_1715 PF07733 Bacterial DNA polymerase III alpha NTPase domain Clo1313_1715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Clo1313_1715 PF00929 Exonuclease Clo1313_1716 PF04055 Radical SAM superfamily Clo1313_1717 PF01228 Glycine radical Clo1313_1717 PF02901 Pyruvate formate lyase-like Clo1313_1718 PF09587 Bacterial capsule synthesis protein PGA_cap Clo1313_1725 PF04542 Sigma-70 region 2 Clo1313_1725 PF04539 Sigma-70 region 3 Clo1313_1725 PF04545 Sigma-70, region 4 Clo1313_1727 PF03975 CheD chemotactic sensory transduction Clo1313_1728 PF04509 CheC-like family Clo1313_1729 PF01584 CheW-like domain Clo1313_1730 PF01627 Hpt domain Clo1313_1730 PF07194 P2 response regulator binding domain Clo1313_1730 PF02895 Signal transducing histidine kinase, homodimeric domain Clo1313_1730 PF01584 CheW-like domain Clo1313_1730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1731 PF01339 CheB methylesterase Clo1313_1731 PF00072 Response regulator receiver domain Clo1313_1733 PF10609 NUBPL iron-transfer P-loop NTPase Clo1313_1734 PF00448 SRP54-type protein, GTPase domain Clo1313_1735 PF00771 FHIPEP family Clo1313_1736 PF01312 FlhB HrpN YscU SpaS Family Clo1313_1737 PF01311 Bacterial export proteins, family 1 Clo1313_1738 PF01313 Bacterial export proteins, family 3 Clo1313_1739 PF00813 FliP family Clo1313_1741 PF00072 Response regulator receiver domain Clo1313_1742 PF04509 CheC-like family Clo1313_1742 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Clo1313_1743 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Clo1313_1743 PF02154 Flagellar motor switch protein FliM Clo1313_1745 PF06289 Flagellar and Swarming motility proteins Clo1313_1746 PF07559 Flagellar basal body protein FlaE Clo1313_1746 PF00460 Flagella basal body rod protein Clo1313_1746 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clo1313_1748 PF03963 Flagellar hook capping protein - N-terminal region Clo1313_1752 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clo1313_1752 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clo1313_1752 PF18269 T3SS EscN ATPase C-terminal domain Clo1313_1753 PF02108 Flagellar assembly protein FliH Clo1313_1754 PF14841 FliG middle domain Clo1313_1754 PF01706 FliG C-terminal domain Clo1313_1754 PF14842 FliG N-terminal domain Clo1313_1756 PF02049 Flagellar hook-basal body complex protein FliE Clo1313_1757 PF00460 Flagella basal body rod protein Clo1313_1757 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clo1313_1758 PF00460 Flagella basal body rod protein Clo1313_1759 PF01134 Glucose inhibited division protein A Clo1313_1760 PF01396 Topoisomerase DNA binding C4 zinc finger Clo1313_1760 PF01751 Toprim domain Clo1313_1760 PF01131 DNA topoisomerase Clo1313_1761 PF02481 DNA recombination-mediator protein A Clo1313_1761 PF17782 DprA winged helix domain Clo1313_1762 PF03372 Endonuclease/Exonuclease/phosphatase family Clo1313_1763 PF03733 Inner membrane component domain Clo1313_1765 PF13335 Magnesium chelatase, subunit ChlI C-terminal Clo1313_1765 PF01078 Magnesium chelatase, subunit ChlI Clo1313_1768 PF00942 Cellulose binding domain Clo1313_1768 PF00963 Cohesin domain Clo1313_1768 PF00404 Dockerin type I domain Clo1313_1770 PF03477 ATP cone domain Clo1313_1771 PF05239 PRC-barrel domain Clo1313_1772 PF04542 Sigma-70 region 2 Clo1313_1772 PF04545 Sigma-70, region 4 Clo1313_1772 PF04539 Sigma-70 region 3 Clo1313_1773 PF04545 Sigma-70, region 4 Clo1313_1773 PF04542 Sigma-70 region 2 Clo1313_1775 PF12327 FtsZ family, C-terminal domain Clo1313_1775 PF00091 Tubulin/FtsZ family, GTPase domain Clo1313_1776 PF02491 SHS2 domain inserted in FTSA Clo1313_1777 PF06947 Protein of unknown function (DUF1290) Clo1313_1778 PF08478 POTRA domain, FtsQ-type Clo1313_1778 PF03799 Cell division protein FtsQ Clo1313_1780 PF08353 Domain of unknown function (DUF1727) Clo1313_1780 PF08245 Mur ligase middle domain Clo1313_1781 PF07685 CobB/CobQ-like glutamine amidotransferase domain Clo1313_1782 PF00872 Transposase, Mutator family Clo1313_1783 PF00404 Dockerin type I domain Clo1313_1788 PF00942 Cellulose binding domain Clo1313_1788 PF00759 Glycosyl hydrolase family 9 Clo1313_1791 PF02906 Iron only hydrogenase large subunit, C-terminal domain Clo1313_1791 PF02256 Iron hydrogenase small subunit Clo1313_1791 PF00037 4Fe-4S binding domain Clo1313_1791 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Clo1313_1792 PF00037 4Fe-4S binding domain Clo1313_1792 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clo1313_1792 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clo1313_1798 PF00465 Iron-containing alcohol dehydrogenase Clo1313_1798 PF00171 Aldehyde dehydrogenase family Clo1313_1799 PF02629 CoA binding domain Clo1313_1799 PF06971 Putative DNA-binding protein N-terminus Clo1313_1800 PF02441 Flavoprotein Clo1313_1802 PF05193 Peptidase M16 inactive domain Clo1313_1802 PF00675 Insulinase (Peptidase family M16) Clo1313_1803 PF00013 KH domain Clo1313_1803 PF00575 S1 RNA binding domain Clo1313_1803 PF03725 3' exoribonuclease family, domain 2 Clo1313_1803 PF01138 3' exoribonuclease family, domain 1 Clo1313_1803 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Clo1313_1804 PF00312 Ribosomal protein S15 Clo1313_1806 PF12652 CotJB protein Clo1313_1807 PF05067 Manganese containing catalase Clo1313_1808 PF02927 Cellulase N-terminal ig-like domain Clo1313_1808 PF00404 Dockerin type I domain Clo1313_1808 PF02018 Carbohydrate binding domain Clo1313_1808 PF00759 Glycosyl hydrolase family 9 Clo1313_1808 PF00404 Dockerin type I domain Clo1313_1808 PF02927 Cellulase N-terminal ig-like domain Clo1313_1808 PF02018 Carbohydrate binding domain Clo1313_1808 PF00759 Glycosyl hydrolase family 9 Clo1313_1809 PF02927 Cellulase N-terminal ig-like domain Clo1313_1809 PF00404 Dockerin type I domain Clo1313_1809 PF00759 Glycosyl hydrolase family 9 Clo1313_1809 PF02018 Carbohydrate binding domain Clo1313_1811 PF05167 Uncharacterised ACR (DUF711) Clo1313_1813 PF00563 EAL domain Clo1313_1813 PF00990 Diguanylate cyclase, GGDEF domain Clo1313_1813 PF03707 Bacterial signalling protein N terminal repeat Clo1313_1816 PF00331 Glycosyl hydrolase family 10 Clo1313_1816 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_1816 PF00942 Cellulose binding domain Clo1313_1817 PF00942 Cellulose binding domain Clo1313_1817 PF12791 Anti-sigma factor N-terminus Clo1313_1818 PF04542 Sigma-70 region 2 Clo1313_1823 PF01906 Putative heavy-metal-binding Clo1313_1824 PF00664 ABC transporter transmembrane region Clo1313_1824 PF00005 ABC transporter Clo1313_1825 PF00664 ABC transporter transmembrane region Clo1313_1825 PF00005 ABC transporter Clo1313_1826 PF05025 RbsD / FucU transport protein family Clo1313_1827 PF00465 Iron-containing alcohol dehydrogenase Clo1313_1828 PF13407 Periplasmic binding protein domain Clo1313_1829 PF02653 Branched-chain amino acid transport system / permease component Clo1313_1830 PF00005 ABC transporter Clo1313_1831 PF00480 ROK family Clo1313_1831 PF01325 Iron dependent repressor, N-terminal DNA binding domain Clo1313_1832 PF00294 pfkB family carbohydrate kinase Clo1313_1833 PF00107 Zinc-binding dehydrogenase Clo1313_1833 PF08240 Alcohol dehydrogenase GroES-like domain Clo1313_1838 PF12704 MacB-like periplasmic core domain Clo1313_1838 PF02687 FtsX-like permease family Clo1313_1838 PF00005 ABC transporter Clo1313_1846 PF00117 Glutamine amidotransferase class-I Clo1313_1846 PF00958 GMP synthase C terminal domain Clo1313_1846 PF02540 NAD synthase Clo1313_1847 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Clo1313_1847 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Clo1313_1848 PF00175 Oxidoreductase NAD-binding domain Clo1313_1848 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Clo1313_1849 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clo1313_1849 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clo1313_1849 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_1850 PF00872 Transposase, Mutator family Clo1313_1852 PF01969 Protein of unknown function DUF111 Clo1313_1853 PF00731 AIR carboxylase Clo1313_1854 PF03807 NADP oxidoreductase coenzyme F420-dependent Clo1313_1854 PF14748 Pyrroline-5-carboxylate reductase dimerisation Clo1313_1857 PF01381 Helix-turn-helix Clo1313_1858 PF00155 Aminotransferase class I and II Clo1313_1859 PF01037 Lrp/AsnC ligand binding domain Clo1313_1862 PF00085 Thioredoxin Clo1313_1864 PF00872 Transposase, Mutator family Clo1313_1867 PF11897 Protein of unknown function (DUF3417) Clo1313_1867 PF00343 Carbohydrate phosphorylase Clo1313_1870 PF01869 BadF/BadG/BcrA/BcrD ATPase family Clo1313_1874 PF10502 Signal peptidase, peptidase S26 Clo1313_1875 PF01116 Fructose-bisphosphate aldolase class-II Clo1313_1876 PF00365 Phosphofructokinase Clo1313_1878 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Clo1313_1878 PF00056 lactate/malate dehydrogenase, NAD binding domain Clo1313_1879 PF03949 Malic enzyme, NAD binding domain Clo1313_1879 PF00390 Malic enzyme, N-terminal domain Clo1313_1880 PF01613 Flavin reductase like domain Clo1313_1881 PF02906 Iron only hydrogenase large subunit, C-terminal domain Clo1313_1881 PF00037 4Fe-4S binding domain Clo1313_1881 PF02256 Iron hydrogenase small subunit Clo1313_1881 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Clo1313_1882 PF00037 4Fe-4S binding domain Clo1313_1882 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Clo1313_1882 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Clo1313_1884 PF00072 Response regulator receiver domain Clo1313_1884 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_1884 PF09308 LuxQ, periplasmic Clo1313_1884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1888 PF04060 Putative Fe-S cluster Clo1313_1889 PF13581 Histidine kinase-like ATPase domain Clo1313_1891 PF03129 Anticodon binding domain Clo1313_1891 PF02824 TGS domain Clo1313_1891 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Clo1313_1891 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Clo1313_1896 PF00009 Elongation factor Tu GTP binding domain Clo1313_1896 PF03144 Elongation factor Tu domain 2 Clo1313_1896 PF16658 Class II release factor RF3, C-terminal domain Clo1313_1897 PF00395 S-layer homology domain Clo1313_1897 PF00963 Cohesin domain Clo1313_1898 PF01797 Transposase IS200 like Clo1313_1901 PF02540 NAD synthase Clo1313_1901 PF00795 Carbon-nitrogen hydrolase Clo1313_1902 PF00133 tRNA synthetases class I (I, L, M and V) Clo1313_1902 PF10458 Valyl tRNA synthetase tRNA binding arm Clo1313_1902 PF08264 Anticodon-binding domain of tRNA Clo1313_1904 PF00933 Glycosyl hydrolase family 3 N terminal domain Clo1313_1904 PF01915 Glycosyl hydrolase family 3 C-terminal domain Clo1313_1907 PF00596 Class II Aldolase and Adducin N-terminal domain Clo1313_1908 PF17964 Bacterial Ig domain Clo1313_1908 PF03734 L,D-transpeptidase catalytic domain Clo1313_1910 PF07691 PA14 domain Clo1313_1910 PF12791 Anti-sigma factor N-terminus Clo1313_1911 PF04542 Sigma-70 region 2 Clo1313_1914 PF10431 C-terminal, D2-small domain, of ClpB protein Clo1313_1914 PF02861 Clp amino terminal domain, pathogenicity island component Clo1313_1914 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_1914 PF07724 AAA domain (Cdc48 subfamily) Clo1313_1914 PF17871 AAA lid domain Clo1313_1916 PF17755 UvrA DNA-binding domain Clo1313_1916 PF17760 UvrA interaction domain Clo1313_1917 PF06725 3D domain Clo1313_1917 PF07501 G5 domain Clo1313_1917 PF03990 G5-linked-Ubiquitin-like domain Clo1313_1918 PF17757 UvrB interaction domain Clo1313_1918 PF00271 Helicase conserved C-terminal domain Clo1313_1918 PF02151 UvrB/uvrC motif Clo1313_1918 PF04851 Type III restriction enzyme, res subunit Clo1313_1918 PF12344 Ultra-violet resistance protein B Clo1313_1921 PF03989 DNA gyrase C-terminal domain, beta-propeller Clo1313_1921 PF00521 DNA gyrase/topoisomerase IV, subunit A Clo1313_1922 PF00986 DNA gyrase B subunit, carboxyl terminus Clo1313_1922 PF01751 Toprim domain Clo1313_1922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1922 PF00204 DNA gyrase B Clo1313_1925 PF12821 Threonine/Serine exporter, ThrE Clo1313_1926 PF06738 Putative threonine/serine exporter Clo1313_1927 PF00188 Cysteine-rich secretory protein family Clo1313_1928 PF01554 MatE Clo1313_1929 PF00672 HAMP domain Clo1313_1929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_1929 PF02203 Tar ligand binding domain homologue Clo1313_1931 PF00266 Aminotransferase class-V Clo1313_1937 PF03190 Protein of unknown function, DUF255 Clo1313_1938 PF01842 ACT domain Clo1313_1938 PF00742 Homoserine dehydrogenase Clo1313_1938 PF03447 Homoserine dehydrogenase, NAD binding domain Clo1313_1939 PF04851 Type III restriction enzyme, res subunit Clo1313_1939 PF13307 Helicase C-terminal domain Clo1313_1940 PF01739 CheR methyltransferase, SAM binding domain Clo1313_1940 PF03705 CheR methyltransferase, all-alpha domain Clo1313_1942 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_1942 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_1944 PF00180 Isocitrate/isopropylmalate dehydrogenase Clo1313_1946 PF00248 Aldo/keto reductase family Clo1313_1947 PF08323 Starch synthase catalytic domain Clo1313_1947 PF00534 Glycosyl transferases group 1 Clo1313_1950 PF01479 S4 domain Clo1313_1950 PF00849 RNA pseudouridylate synthase Clo1313_1951 PF02926 THUMP domain Clo1313_1951 PF01170 Putative RNA methylase family UPF0020 Clo1313_1951 PF10672 S-adenosylmethionine-dependent methyltransferase Clo1313_1953 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Clo1313_1953 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Clo1313_1954 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Clo1313_1954 PF06165 Glycosyltransferase family 36 Clo1313_1955 PF00942 Cellulose binding domain Clo1313_1955 PF00759 Glycosyl hydrolase family 9 Clo1313_1956 PF01966 HD domain Clo1313_1957 PF00768 D-alanyl-D-alanine carboxypeptidase Clo1313_1957 PF07943 Penicillin-binding protein 5, C-terminal domain Clo1313_1958 PF00759 Glycosyl hydrolase family 9 Clo1313_1958 PF00942 Cellulose binding domain Clo1313_1959 PF00704 Glycosyl hydrolases family 18 Clo1313_1959 PF00041 Fibronectin type III domain Clo1313_1960 PF00404 Dockerin type I domain Clo1313_1960 PF01270 Glycosyl hydrolases family 8 Clo1313_1962 PF00942 Cellulose binding domain Clo1313_1962 PF12791 Anti-sigma factor N-terminus Clo1313_1963 PF00672 HAMP domain Clo1313_1963 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_1963 PF17200 Single Cache domain 2 Clo1313_1964 PF00266 Aminotransferase class-V Clo1313_1967 PF00171 Aldehyde dehydrogenase family Clo1313_1969 PF12791 Anti-sigma factor N-terminus Clo1313_1971 PF00404 Dockerin type I domain Clo1313_1972 PF00437 Type II/IV secretion system protein Clo1313_1973 PF00356 Bacterial regulatory proteins, lacI family Clo1313_1976 PF07726 ATPase family associated with various cellular activities (AAA) Clo1313_1976 PF17863 AAA lid domain Clo1313_1979 PF01139 tRNA-splicing ligase RtcB Clo1313_1980 PF03415 Clostripain family Clo1313_1982 PF01624 MutS domain I Clo1313_1982 PF05192 MutS domain III Clo1313_1982 PF05190 MutS family domain IV Clo1313_1982 PF00488 MutS domain V Clo1313_1982 PF05188 MutS domain II Clo1313_1983 PF18370 Rhamnogalacturonan I lyases beta-sheet domain Clo1313_1984 PF01022 Bacterial regulatory protein, arsR family Clo1313_1985 PF00403 Heavy-metal-associated domain Clo1313_1986 PF01471 Putative peptidoglycan binding domain Clo1313_1986 PF07486 Cell Wall Hydrolase Clo1313_1990 PF01270 Glycosyl hydrolases family 8 Clo1313_1990 PF00404 Dockerin type I domain Clo1313_1992 PF00248 Aldo/keto reductase family Clo1313_1993 PF00462 Glutaredoxin Clo1313_1994 PF13193 AMP-binding enzyme C-terminal domain Clo1313_1994 PF00501 AMP-binding enzyme Clo1313_1995 PF13302 Acetyltransferase (GNAT) domain Clo1313_1997 PF06463 Molybdenum Cofactor Synthesis C Clo1313_1997 PF04055 Radical SAM superfamily Clo1313_1999 PF01370 NAD dependent epimerase/dehydratase family Clo1313_2004 PF00580 UvrD/REP helicase N-terminal domain Clo1313_2004 PF13361 UvrD-like helicase C-terminal domain Clo1313_2005 PF02463 RecF/RecN/SMC N terminal domain Clo1313_2006 PF03747 ADP-ribosylglycohydrolase Clo1313_2008 PF00872 Transposase, Mutator family Clo1313_2014 PF00149 Calcineurin-like phosphoesterase Clo1313_2015 PF00342 Phosphoglucose isomerase Clo1313_2017 PF03147 Ferredoxin-fold anticodon binding domain Clo1313_2017 PF01588 Putative tRNA binding domain Clo1313_2017 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Clo1313_2017 PF03483 B3/4 domain Clo1313_2017 PF03484 tRNA synthetase B5 domain Clo1313_2018 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Clo1313_2018 PF01409 tRNA synthetases class II core domain (F) Clo1313_2020 PF00232 Glycosyl hydrolase family 1 Clo1313_2022 PF00722 Glycosyl hydrolases family 16 Clo1313_2022 PF00404 Dockerin type I domain Clo1313_2023 PF00356 Bacterial regulatory proteins, lacI family Clo1313_2024 PF00535 Glycosyl transferase family 2 Clo1313_2027 PF13361 UvrD-like helicase C-terminal domain Clo1313_2027 PF00580 UvrD/REP helicase N-terminal domain Clo1313_2031 PF03951 Glutamine synthetase, beta-Grasp domain Clo1313_2031 PF00120 Glutamine synthetase, catalytic domain Clo1313_2033 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_2033 PF18267 Rubredoxin NAD+ reductase C-terminal domain Clo1313_2033 PF04324 BFD-like [2Fe-2S] binding domain Clo1313_2033 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Clo1313_2033 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Clo1313_2034 PF13247 4Fe-4S dicluster domain Clo1313_2034 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Clo1313_2034 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_2035 PF13187 4Fe-4S dicluster domain Clo1313_2035 PF01645 Conserved region in glutamate synthase Clo1313_2036 PF00310 Glutamine amidotransferases class-II Clo1313_2038 PF12437 Glutamine synthetase type III N terminal Clo1313_2038 PF18318 Glutamine synthetase C-terminal domain Clo1313_2038 PF00120 Glutamine synthetase, catalytic domain Clo1313_2041 PF00999 Sodium/hydrogen exchanger family Clo1313_2042 PF00722 Glycosyl hydrolases family 16 Clo1313_2042 PF00404 Dockerin type I domain Clo1313_2043 PF00404 Dockerin type I domain Clo1313_2043 PF01270 Glycosyl hydrolases family 8 Clo1313_2044 PF01725 Ham1 family Clo1313_2045 PF03725 3' exoribonuclease family, domain 2 Clo1313_2045 PF01138 3' exoribonuclease family, domain 1 Clo1313_2046 PF10646 Sporulation and spore germination Clo1313_2047 PF16363 GDP-mannose 4,6 dehydratase Clo1313_2048 PF01520 N-acetylmuramoyl-L-alanine amidase Clo1313_2050 PF02677 Epoxyqueuosine reductase QueH Clo1313_2051 PF17864 RuvB AAA lid domain Clo1313_2051 PF05496 Holliday junction DNA helicase RuvB P-loop domain Clo1313_2051 PF05491 RuvB C-terminal winged helix domain Clo1313_2052 PF01330 RuvA N terminal domain Clo1313_2052 PF07499 RuvA, C-terminal domain Clo1313_2053 PF02075 Crossover junction endodeoxyribonuclease RuvC Clo1313_2054 PF00764 Arginosuccinate synthase Clo1313_2055 PF14698 Argininosuccinate lyase C-terminal Clo1313_2055 PF00206 Lyase Clo1313_2059 PF00884 Sulfatase Clo1313_2060 PF01593 Flavin containing amine oxidoreductase Clo1313_2066 PF01339 CheB methylesterase Clo1313_2066 PF00072 Response regulator receiver domain Clo1313_2067 PF08331 Domain of unknown function (DUF1730) Clo1313_2069 PF01985 CRS1 / YhbY (CRM) domain Clo1313_2071 PF09269 Domain of unknown function (DUF1967) Clo1313_2071 PF01018 GTP1/OBG Clo1313_2071 PF01926 50S ribosome-binding GTPase Clo1313_2072 PF01016 Ribosomal L27 protein Clo1313_2074 PF00829 Ribosomal prokaryotic L21 protein Clo1313_2075 PF10150 Ribonuclease E/G family Clo1313_2075 PF00575 S1 RNA binding domain Clo1313_2078 PF11258 Protein of unknown function (DUF3048) N-terminal domain Clo1313_2078 PF17479 Protein of unknown function (DUF3048) C-terminal domain Clo1313_2079 PF06949 Protein of unknown function (DUF1292) Clo1313_2080 PF03652 Holliday junction resolvase Clo1313_2081 PF00248 Aldo/keto reductase family Clo1313_2082 PF06135 IreB regulatory phosphoprotein Clo1313_2083 PF04055 Radical SAM superfamily Clo1313_2083 PF01938 TRAM domain Clo1313_2083 PF00919 Uncharacterized protein family UPF0004 Clo1313_2085 PF04463 Protein of unknown function (DUF523) Clo1313_2086 PF00575 S1 RNA binding domain Clo1313_2086 PF08206 Ribonuclease B OB domain Clo1313_2086 PF17876 Cold shock domain Clo1313_2086 PF00773 RNB domain Clo1313_2087 PF01797 Transposase IS200 like Clo1313_2090 PF00113 Enolase, C-terminal TIM barrel domain Clo1313_2090 PF03952 Enolase, N-terminal domain Clo1313_2091 PF01966 HD domain Clo1313_2092 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Clo1313_2092 PF01676 Metalloenzyme superfamily Clo1313_2093 PF00121 Triosephosphate isomerase Clo1313_2094 PF00162 Phosphoglycerate kinase Clo1313_2095 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Clo1313_2095 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Clo1313_2097 PF00109 Beta-ketoacyl synthase, N-terminal domain Clo1313_2097 PF00550 Phosphopantetheine attachment site Clo1313_2097 PF00698 Acyl transferase domain Clo1313_2097 PF00668 Condensation domain Clo1313_2097 PF16197 Ketoacyl-synthetase C-terminal extension Clo1313_2097 PF02801 Beta-ketoacyl synthase, C-terminal domain Clo1313_2099 PF00501 AMP-binding enzyme Clo1313_2099 PF13193 AMP-binding enzyme C-terminal domain Clo1313_2100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Clo1313_2100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Clo1313_2101 PF00550 Phosphopantetheine attachment site Clo1313_2102 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Clo1313_2102 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Clo1313_2103 PF00072 Response regulator receiver domain Clo1313_2103 PF01966 HD domain Clo1313_2104 PF00588 SpoU rRNA Methylase family Clo1313_2106 PF14097 Stage V sporulation protein AE1 Clo1313_2107 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Clo1313_2109 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Clo1313_2111 PF04539 Sigma-70 region 3 Clo1313_2111 PF04542 Sigma-70 region 2 Clo1313_2111 PF04545 Sigma-70, region 4 Clo1313_2112 PF13581 Histidine kinase-like ATPase domain Clo1313_2113 PF01740 STAS domain Clo1313_2114 PF00381 PTS HPr component phosphorylation site Clo1313_2115 PF02650 WhiA C-terminal HTH domain Clo1313_2115 PF14527 WhiA LAGLIDADG-like domain Clo1313_2115 PF10298 WhiA N-terminal LAGLIDADG-like domain Clo1313_2117 PF01933 Uncharacterised protein family UPF0052 Clo1313_2118 PF03668 P-loop ATPase protein family Clo1313_2119 PF01565 FAD binding domain Clo1313_2119 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Clo1313_2120 PF02811 PHP domain Clo1313_2121 PF02603 HPr Serine kinase N terminus Clo1313_2121 PF07475 HPr Serine kinase C-terminal domain Clo1313_2124 PF00885 6,7-dimethyl-8-ribityllumazine synthase Clo1313_2125 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Clo1313_2125 PF00925 GTP cyclohydrolase II Clo1313_2126 PF00677 Lumazine binding domain Clo1313_2127 PF01872 RibD C-terminal domain Clo1313_2127 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clo1313_2128 PF01894 Uncharacterised protein family UPF0047 Clo1313_2129 PF02390 Putative methyltransferase Clo1313_2130 PF00465 Iron-containing alcohol dehydrogenase Clo1313_2132 PF02219 Methylenetetrahydrofolate reductase Clo1313_2133 PF00571 CBS domain Clo1313_2133 PF02163 Peptidase family M50 Clo1313_2134 PF01551 Peptidase family M23 Clo1313_2135 PF03698 Uncharacterised protein family (UPF0180) Clo1313_2136 PF02142 MGS-like domain Clo1313_2137 PF03776 Septum formation topological specificity factor MinE Clo1313_2138 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Clo1313_2139 PF03775 Septum formation inhibitor MinC, C-terminal domain Clo1313_2140 PF03717 Penicillin-binding Protein dimerisation domain Clo1313_2140 PF00905 Penicillin binding protein transpeptidase domain Clo1313_2144 PF02545 Maf-like protein Clo1313_2146 PF05389 Negative regulator of genetic competence (MecA) Clo1313_2149 PF05362 Lon protease (S16) C-terminal proteolytic domain Clo1313_2149 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_2149 PF02190 ATP-dependent protease La (LON) substrate-binding domain Clo1313_2150 PF01960 ArgJ family Clo1313_2151 PF01584 CheW-like domain Clo1313_2161 PF02011 Glycosyl hydrolase family 48 Clo1313_2161 PF00942 Cellulose binding domain Clo1313_2161 PF03442 Carbohydrate binding domain X2 Clo1313_2162 PF01336 OB-fold nucleic acid binding domain Clo1313_2162 PF00152 tRNA synthetases class II (D, K and N) Clo1313_2163 PF03590 Aspartate-ammonia ligase Clo1313_2164 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Clo1313_2165 PF02146 Sir2 family Clo1313_2168 PF02690 Na+/Pi-cotransporter Clo1313_2170 PF00884 Sulfatase Clo1313_2171 PF02632 BioY family Clo1313_2172 PF02810 SEC-C motif Clo1313_2172 PF07517 SecA DEAD-like domain Clo1313_2172 PF07516 SecA Wing and Scaffold domain Clo1313_2172 PF01043 SecA preprotein cross-linking domain Clo1313_2173 PF00942 Cellulose binding domain Clo1313_2173 PF12791 Anti-sigma factor N-terminus Clo1313_2176 PF02368 Bacterial Ig-like domain (group 2) Clo1313_2178 PF02638 Glycosyl hydrolase-like 10 Clo1313_2179 PF03477 ATP cone domain Clo1313_2179 PF02867 Ribonucleotide reductase, barrel domain Clo1313_2179 PF00317 Ribonucleotide reductase, all-alpha domain Clo1313_2188 PF00331 Glycosyl hydrolase family 10 Clo1313_2188 PF03422 Carbohydrate binding module (family 6) Clo1313_2188 PF00404 Dockerin type I domain Clo1313_2188 PF00756 Putative esterase Clo1313_2189 PF00759 Glycosyl hydrolase family 9 Clo1313_2189 PF00942 Cellulose binding domain Clo1313_2190 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Clo1313_2190 PF01926 50S ribosome-binding GTPase Clo1313_2192 PF00942 Cellulose binding domain Clo1313_2192 PF00759 Glycosyl hydrolase family 9 Clo1313_2193 PF00672 HAMP domain Clo1313_2193 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_2193 PF12729 Four helix bundle sensory module for signal transduction Clo1313_2194 PF01584 CheW-like domain Clo1313_2195 PF12729 Four helix bundle sensory module for signal transduction Clo1313_2195 PF00672 HAMP domain Clo1313_2195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_2196 PF01584 CheW-like domain Clo1313_2197 PF00011 Hsp20/alpha crystallin family Clo1313_2198 PF03063 Prismane/CO dehydrogenase family Clo1313_2199 PF02256 Iron hydrogenase small subunit Clo1313_2199 PF02906 Iron only hydrogenase large subunit, C-terminal domain Clo1313_2199 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Clo1313_2199 PF00037 4Fe-4S binding domain Clo1313_2201 PF00679 Elongation factor G C-terminus Clo1313_2201 PF14492 Elongation Factor G, domain II Clo1313_2201 PF03764 Elongation factor G, domain IV Clo1313_2201 PF00009 Elongation factor Tu GTP binding domain Clo1313_2202 PF02156 Glycosyl hydrolase family 26 Clo1313_2207 PF00202 Aminotransferase class-III Clo1313_2208 PF13847 Methyltransferase domain Clo1313_2209 PF12697 Alpha/beta hydrolase family Clo1313_2210 PF00155 Aminotransferase class I and II Clo1313_2212 PF06968 Biotin and Thiamin Synthesis associated domain Clo1313_2212 PF04055 Radical SAM superfamily Clo1313_2214 PF07556 Protein of unknown function (DUF1538) Clo1313_2216 PF04616 Glycosyl hydrolases family 43 Clo1313_2216 PF16369 C-terminal lipocalin-like domain Clo1313_2224 PF00872 Transposase, Mutator family Clo1313_2228 PF00578 AhpC/TSA family Clo1313_2232 PF08281 Sigma-70, region 4 Clo1313_2232 PF04542 Sigma-70 region 2 Clo1313_2234 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_2234 PF03425 Carbohydrate binding domain (family 11) Clo1313_2234 PF00404 Dockerin type I domain Clo1313_2234 PF02156 Glycosyl hydrolase family 26 Clo1313_2235 PF03358 NADPH-dependent FMN reductase Clo1313_2238 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Clo1313_2238 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Clo1313_2238 PF02142 MGS-like domain Clo1313_2239 PF00692 dUTPase Clo1313_2240 PF00440 Bacterial regulatory proteins, tetR family Clo1313_2242 PF03176 MMPL family Clo1313_2247 PF00753 Metallo-beta-lactamase superfamily Clo1313_2247 PF01613 Flavin reductase like domain Clo1313_2248 PF00293 NUDIX domain Clo1313_2250 PF02743 Cache domain Clo1313_2250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_2250 PF00672 HAMP domain Clo1313_2255 PF03551 Transcriptional regulator PadR-like family Clo1313_2255 PF10400 Virulence activator alpha C-term Clo1313_2256 PF00892 EamA-like transporter family Clo1313_2259 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_2259 PF00672 HAMP domain Clo1313_2259 PF12729 Four helix bundle sensory module for signal transduction Clo1313_2260 PF00909 Ammonium Transporter Family Clo1313_2261 PF00005 ABC transporter Clo1313_2261 PF00664 ABC transporter transmembrane region Clo1313_2262 PF00664 ABC transporter transmembrane region Clo1313_2262 PF00005 ABC transporter Clo1313_2266 PF00963 Cohesin domain Clo1313_2266 PF00395 S-layer homology domain Clo1313_2270 PF03960 ArsC family Clo1313_2273 PF01555 DNA methylase Clo1313_2274 PF04556 DpnII restriction endonuclease Clo1313_2275 PF02086 D12 class N6 adenine-specific DNA methyltransferase Clo1313_2278 PF03193 RsgA GTPase Clo1313_2283 PF10672 S-adenosylmethionine-dependent methyltransferase Clo1313_2283 PF17785 PUA-like domain Clo1313_2291 PF02687 FtsX-like permease family Clo1313_2292 PF00005 ABC transporter Clo1313_2293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2294 PF00072 Response regulator receiver domain Clo1313_2294 PF00486 Transcriptional regulatory protein, C terminal Clo1313_2300 PF00005 ABC transporter Clo1313_2300 PF13732 Domain of unknown function (DUF4162) Clo1313_2302 PF01381 Helix-turn-helix Clo1313_2303 PF18318 Glutamine synthetase C-terminal domain Clo1313_2303 PF00120 Glutamine synthetase, catalytic domain Clo1313_2303 PF12437 Glutamine synthetase type III N terminal Clo1313_2304 PF02934 GatB/GatE catalytic domain Clo1313_2304 PF02637 GatB domain Clo1313_2305 PF01425 Amidase Clo1313_2306 PF02686 Glu-tRNAGln amidotransferase C subunit Clo1313_2307 PF02938 GAD domain Clo1313_2307 PF01336 OB-fold nucleic acid binding domain Clo1313_2307 PF00152 tRNA synthetases class II (D, K and N) Clo1313_2312 PF00378 Enoyl-CoA hydratase/isomerase Clo1313_2314 PF13649 Methyltransferase domain Clo1313_2319 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Clo1313_2319 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Clo1313_2321 PF03180 NLPA lipoprotein Clo1313_2322 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_2323 PF09383 NIL domain Clo1313_2323 PF00005 ABC transporter Clo1313_2324 PF02082 Transcriptional regulator Clo1313_2325 PF01053 Cys/Met metabolism PLP-dependent enzyme Clo1313_2326 PF00291 Pyridoxal-phosphate dependent enzyme Clo1313_2329 PF00005 ABC transporter Clo1313_2331 PF00148 Nitrogenase component 1 type Oxidoreductase Clo1313_2332 PF00148 Nitrogenase component 1 type Oxidoreductase Clo1313_2333 PF02579 Dinitrogenase iron-molybdenum cofactor Clo1313_2333 PF04055 Radical SAM superfamily Clo1313_2334 PF02579 Dinitrogenase iron-molybdenum cofactor Clo1313_2334 PF04055 Radical SAM superfamily Clo1313_2335 PF01053 Cys/Met metabolism PLP-dependent enzyme Clo1313_2337 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_2338 PF00005 ABC transporter Clo1313_2339 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Clo1313_2341 PF01048 Phosphorylase superfamily Clo1313_2342 PF02608 ABC transporter substrate-binding protein PnrA-like Clo1313_2343 PF11230 Protein of unknown function (DUF3029) Clo1313_2344 PF04055 Radical SAM superfamily Clo1313_2345 PF00005 ABC transporter Clo1313_2346 PF02653 Branched-chain amino acid transport system / permease component Clo1313_2347 PF02653 Branched-chain amino acid transport system / permease component Clo1313_2348 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Clo1313_2349 PF01791 DeoC/LacD family aldolase Clo1313_2350 PF12833 Helix-turn-helix domain Clo1313_2350 PF00072 Response regulator receiver domain Clo1313_2351 PF06580 Histidine kinase Clo1313_2352 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_2353 PF08402 TOBE domain Clo1313_2353 PF00005 ABC transporter Clo1313_2359 PF02595 Glycerate kinase family Clo1313_2366 PF00176 SNF2 family N-terminal domain Clo1313_2366 PF00271 Helicase conserved C-terminal domain Clo1313_2374 PF00293 NUDIX domain Clo1313_2375 PF13936 Helix-turn-helix domain Clo1313_2376 PF13408 Recombinase zinc beta ribbon domain Clo1313_2376 PF07508 Recombinase Clo1313_2378 PF02796 Helix-turn-helix domain of resolvase Clo1313_2378 PF00239 Resolvase, N terminal domain Clo1313_2380 PF01476 LysM domain Clo1313_2380 PF01510 N-acetylmuramoyl-L-alanine amidase Clo1313_2380 PF01471 Putative peptidoglycan binding domain Clo1313_2381 PF05105 Bacteriophage holin family Clo1313_2396 PF00574 Clp protease Clo1313_2397 PF04860 Phage portal protein Clo1313_2398 PF03354 Phage Terminase Clo1313_2405 PF01555 DNA methylase Clo1313_2406 PF01555 DNA methylase Clo1313_2414 PF00005 ABC transporter Clo1313_2416 PF13493 Domain of unknown function (DUF4118) Clo1313_2416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2416 PF02702 Osmosensitive K+ channel His kinase sensor domain Clo1313_2416 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_2417 PF00072 Response regulator receiver domain Clo1313_2417 PF00486 Transcriptional regulatory protein, C terminal Clo1313_2418 PF16123 Hydroxyacylglutathione hydrolase C-terminus Clo1313_2418 PF00753 Metallo-beta-lactamase superfamily Clo1313_2425 PF01938 TRAM domain Clo1313_2425 PF05958 tRNA (Uracil-5-)-methyltransferase Clo1313_2426 PF00005 ABC transporter Clo1313_2427 PF01032 FecCD transport family Clo1313_2428 PF01497 Periplasmic binding protein Clo1313_2430 PF01476 LysM domain Clo1313_2430 PF01551 Peptidase family M23 Clo1313_2430 PF08525 Opacity-associated protein A N-terminal motif Clo1313_2433 PF00912 Transglycosylase Clo1313_2433 PF00905 Penicillin binding protein transpeptidase domain Clo1313_2434 PF02687 FtsX-like permease family Clo1313_2434 PF12704 MacB-like periplasmic core domain Clo1313_2436 PF00005 ABC transporter Clo1313_2439 PF00696 Amino acid kinase family Clo1313_2444 PF02915 Rubrerythrin Clo1313_2445 PF02698 DUF218 domain Clo1313_2446 PF13654 AAA domain Clo1313_2446 PF05362 Lon protease (S16) C-terminal proteolytic domain Clo1313_2447 PF00583 Acetyltransferase (GNAT) family Clo1313_2448 PF00814 Glycoprotease family Clo1313_2449 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Clo1313_2450 PF01979 Amidohydrolase family Clo1313_2455 PF00380 Ribosomal protein S9/S16 Clo1313_2456 PF00572 Ribosomal protein L13 Clo1313_2458 PF10635 DisA bacterial checkpoint controller linker region Clo1313_2458 PF02457 DisA bacterial checkpoint controller nucleotide-binding Clo1313_2459 PF18073 Rubredoxin metal binding domain Clo1313_2462 PF07724 AAA domain (Cdc48 subfamily) Clo1313_2462 PF10431 C-terminal, D2-small domain, of ClpB protein Clo1313_2462 PF02861 Clp amino terminal domain, pathogenicity island component Clo1313_2462 PF17871 AAA lid domain Clo1313_2462 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_2463 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain Clo1313_2464 PF02151 UvrB/uvrC motif Clo1313_2465 PF05848 CtsR N-terminal HTH domain Clo1313_2465 PF17727 CtsR C-terminal dimerization domain Clo1313_2467 PF00679 Elongation factor G C-terminus Clo1313_2467 PF14492 Elongation Factor G, domain II Clo1313_2467 PF03764 Elongation factor G, domain IV Clo1313_2467 PF00009 Elongation factor Tu GTP binding domain Clo1313_2467 PF03144 Elongation factor Tu domain 2 Clo1313_2468 PF00793 DAHP synthetase I family Clo1313_2468 PF18152 DAHP synthase ferredoxin-like domain Clo1313_2469 PF02153 Prephenate dehydrogenase Clo1313_2469 PF01842 ACT domain Clo1313_2470 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clo1313_2471 PF02629 CoA binding domain Clo1313_2471 PF06971 Putative DNA-binding protein N-terminus Clo1313_2472 PF00005 ABC transporter Clo1313_2472 PF16326 ABC transporter C-terminal domain Clo1313_2472 PF12848 ABC transporter Clo1313_2473 PF01476 LysM domain Clo1313_2473 PF00704 Glycosyl hydrolases family 18 Clo1313_2474 PF00005 ABC transporter Clo1313_2475 PF02361 Cobalt transport protein Clo1313_2476 PF13190 PDGLE domain Clo1313_2476 PF01891 Cobalt uptake substrate-specific transmembrane region Clo1313_2477 PF01520 N-acetylmuramoyl-L-alanine amidase Clo1313_2478 PF00486 Transcriptional regulatory protein, C terminal Clo1313_2478 PF00072 Response regulator receiver domain Clo1313_2479 PF00942 Cellulose binding domain Clo1313_2479 PF00963 Cohesin domain Clo1313_2479 PF00404 Dockerin type I domain Clo1313_2483 PF08281 Sigma-70, region 4 Clo1313_2483 PF04542 Sigma-70 region 2 Clo1313_2484 PF00905 Penicillin binding protein transpeptidase domain Clo1313_2484 PF05569 BlaR1 peptidase M56 Clo1313_2485 PF03965 Penicillinase repressor Clo1313_2486 PF01774 UreD urease accessory protein Clo1313_2487 PF02492 CobW/HypB/UreG, nucleotide-binding domain Clo1313_2488 PF01730 UreF Clo1313_2490 PF01979 Amidohydrolase family Clo1313_2490 PF00449 Urease alpha-subunit, N-terminal domain Clo1313_2491 PF00699 Urease beta subunit Clo1313_2492 PF00547 Urease, gamma subunit Clo1313_2493 PF00005 ABC transporter Clo1313_2494 PF12399 Branched-chain amino acid ATP-binding cassette transporter Clo1313_2494 PF00005 ABC transporter Clo1313_2496 PF02653 Branched-chain amino acid transport system / permease component Clo1313_2498 PF12833 Helix-turn-helix domain Clo1313_2498 PF00072 Response regulator receiver domain Clo1313_2499 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Clo1313_2499 PF00072 Response regulator receiver domain Clo1313_2499 PF01627 Hpt domain Clo1313_2499 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_2499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2499 PF00672 HAMP domain Clo1313_2500 PF00360 Phytochrome region Clo1313_2500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2500 PF01590 GAF domain Clo1313_2500 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_2500 PF08446 PAS fold Clo1313_2508 PF00872 Transposase, Mutator family Clo1313_2530 PF00331 Glycosyl hydrolase family 10 Clo1313_2530 PF00404 Dockerin type I domain Clo1313_2530 PF02018 Carbohydrate binding domain Clo1313_2530 PF00331 Glycosyl hydrolase family 10 Clo1313_2530 PF02018 Carbohydrate binding domain Clo1313_2530 PF00404 Dockerin type I domain Clo1313_2530 PF00756 Putative esterase Clo1313_2530 PF00756 Putative esterase Clo1313_2531 PF06968 Biotin and Thiamin Synthesis associated domain Clo1313_2531 PF04055 Radical SAM superfamily Clo1313_2532 PF00291 Pyridoxal-phosphate dependent enzyme Clo1313_2533 PF02540 NAD synthase Clo1313_2534 PF01053 Cys/Met metabolism PLP-dependent enzyme Clo1313_2535 PF02082 Transcriptional regulator Clo1313_2536 PF02082 Transcriptional regulator Clo1313_2537 PF04204 Homoserine O-succinyltransferase Clo1313_2538 PF00989 PAS fold Clo1313_2538 PF18698 Histidine kinase sensor domain Clo1313_2538 PF00672 HAMP domain Clo1313_2538 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_2538 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2539 PF00486 Transcriptional regulatory protein, C terminal Clo1313_2539 PF00072 Response regulator receiver domain Clo1313_2540 PF00403 Heavy-metal-associated domain Clo1313_2544 PF01430 Hsp33 protein Clo1313_2545 PF00313 'Cold-shock' DNA-binding domain Clo1313_2546 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Clo1313_2549 PF17820 PDZ domain Clo1313_2549 PF03572 Peptidase family S41 Clo1313_2549 PF01471 Putative peptidoglycan binding domain Clo1313_2550 PF01476 LysM domain Clo1313_2550 PF01551 Peptidase family M23 Clo1313_2551 PF18075 FtsX extracellular domain Clo1313_2551 PF02687 FtsX-like permease family Clo1313_2552 PF00005 ABC transporter Clo1313_2553 PF13556 PucR C-terminal helix-turn-helix domain Clo1313_2553 PF17853 GGDEF-like domain Clo1313_2553 PF05651 Putative sugar diacid recognition Clo1313_2554 PF17912 MalK OB fold domain Clo1313_2554 PF00005 ABC transporter Clo1313_2554 PF03459 TOBE domain Clo1313_2555 PF02774 Semialdehyde dehydrogenase, dimerisation domain Clo1313_2555 PF01118 Semialdehyde dehydrogenase, NAD binding domain Clo1313_2556 PF00696 Amino acid kinase family Clo1313_2558 PF00202 Aminotransferase class-III Clo1313_2559 PF00117 Glutamine amidotransferase class-I Clo1313_2559 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Clo1313_2560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Clo1313_2560 PF02142 MGS-like domain Clo1313_2560 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Clo1313_2561 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Clo1313_2561 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Clo1313_2564 PF00404 Dockerin type I domain Clo1313_2564 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_2568 PF03551 Transcriptional regulator PadR-like family Clo1313_2569 PF00149 Calcineurin-like phosphoesterase Clo1313_2572 PF02557 D-alanyl-D-alanine carboxypeptidase Clo1313_2574 PF00872 Transposase, Mutator family Clo1313_2576 PF01522 Polysaccharide deacetylase Clo1313_2576 PF13739 Deacetylase PdaC Clo1313_2576 PF11738 Protein of unknown function (DUF3298) Clo1313_2577 PF00668 Condensation domain Clo1313_2577 PF13193 AMP-binding enzyme C-terminal domain Clo1313_2577 PF00501 AMP-binding enzyme Clo1313_2577 PF00550 Phosphopantetheine attachment site Clo1313_2580 PF00501 AMP-binding enzyme Clo1313_2580 PF08659 KR domain Clo1313_2580 PF00668 Condensation domain Clo1313_2580 PF00550 Phosphopantetheine attachment site Clo1313_2580 PF14765 Polyketide synthase dehydratase Clo1313_2580 PF00109 Beta-ketoacyl synthase, N-terminal domain Clo1313_2580 PF02801 Beta-ketoacyl synthase, C-terminal domain Clo1313_2580 PF16197 Ketoacyl-synthetase C-terminal extension Clo1313_2580 PF13193 AMP-binding enzyme C-terminal domain Clo1313_2585 PF01797 Transposase IS200 like Clo1313_2589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2589 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_2589 PF00989 PAS fold Clo1313_2589 PF16736 Single Cache-like Clo1313_2590 PF00486 Transcriptional regulatory protein, C terminal Clo1313_2590 PF00072 Response regulator receiver domain Clo1313_2591 PF00690 Cation transporter/ATPase, N-terminus Clo1313_2591 PF00689 Cation transporting ATPase, C-terminus Clo1313_2592 PF01276 Orn/Lys/Arg decarboxylase, major domain Clo1313_2592 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Clo1313_2593 PF02308 MgtC family Clo1313_2594 PF09551 Stage II sporulation protein R (spore_II_R) Clo1313_2595 PF03551 Transcriptional regulator PadR-like family Clo1313_2597 PF06418 CTP synthase N-terminus Clo1313_2597 PF00117 Glutamine amidotransferase class-I Clo1313_2601 PF03572 Peptidase family S41 Clo1313_2601 PF17820 PDZ domain Clo1313_2601 PF01471 Putative peptidoglycan binding domain Clo1313_2602 PF00395 S-layer homology domain Clo1313_2602 PF03424 Carbohydrate binding domain (family 17/28) Clo1313_2602 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_2606 PF00750 tRNA synthetases class I (R) Clo1313_2606 PF03485 Arginyl tRNA synthetase N terminal domain Clo1313_2606 PF05746 DALR anticodon binding domain Clo1313_2608 PF01177 Asp/Glu/Hydantoin racemase Clo1313_2609 PF01820 D-ala D-ala ligase N-terminus Clo1313_2609 PF07478 D-ala D-ala ligase C-terminus Clo1313_2610 PF00571 CBS domain Clo1313_2610 PF01769 Divalent cation transporter Clo1313_2610 PF03448 MgtE intracellular N domain Clo1313_2615 PF01791 DeoC/LacD family aldolase Clo1313_2616 PF04308 Ribonuclease H-like Clo1313_2617 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_2618 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_2619 PF00578 AhpC/TSA family Clo1313_2620 PF02683 Cytochrome C biogenesis protein transmembrane region Clo1313_2624 PF01471 Putative peptidoglycan binding domain Clo1313_2624 PF07486 Cell Wall Hydrolase Clo1313_2626 PF17674 HHH domain Clo1313_2626 PF00575 S1 RNA binding domain Clo1313_2626 PF16921 Tex protein YqgF-like domain Clo1313_2626 PF09371 Tex-like protein N-terminal domain Clo1313_2627 PF00294 pfkB family carbohydrate kinase Clo1313_2630 PF03851 UV-endonuclease UvdE Clo1313_2631 PF13649 Methyltransferase domain Clo1313_2633 PF00483 Nucleotidyl transferase Clo1313_2634 PF00849 RNA pseudouridylate synthase Clo1313_2635 PF00331 Glycosyl hydrolase family 10 Clo1313_2635 PF00756 Putative esterase Clo1313_2635 PF03422 Carbohydrate binding module (family 6) Clo1313_2635 PF00404 Dockerin type I domain Clo1313_2637 PF07992 Pyridine nucleotide-disulphide oxidoreductase Clo1313_2637 PF13192 Thioredoxin domain Clo1313_2638 PF10417 C-terminal domain of 1-Cys peroxiredoxin Clo1313_2638 PF00578 AhpC/TSA family Clo1313_2641 PF00308 Bacterial dnaA protein Clo1313_2641 PF08299 Bacterial dnaA protein helix-turn-helix Clo1313_2641 PF11638 DnaA N-terminal domain Clo1313_2642 PF01580 FtsK/SpoIIIE family Clo1313_2642 PF12538 DNA transporter Clo1313_2686 PF01797 Transposase IS200 like Clo1313_2689 PF00069 Protein kinase domain Clo1313_2694 PF13361 UvrD-like helicase C-terminal domain Clo1313_2694 PF12705 PD-(D/E)XK nuclease superfamily Clo1313_2694 PF00580 UvrD/REP helicase N-terminal domain Clo1313_2695 PF12705 PD-(D/E)XK nuclease superfamily Clo1313_2708 PF03787 RAMP superfamily Clo1313_2715 PF01661 Macro domain Clo1313_2716 PF04542 Sigma-70 region 2 Clo1313_2716 PF08281 Sigma-70, region 4 Clo1313_2718 PF00588 SpoU rRNA Methylase family Clo1313_2718 PF08032 RNA 2'-O ribose methyltransferase substrate binding Clo1313_2719 PF00636 Ribonuclease III domain Clo1313_2720 PF03323 Bacillus/Clostridium GerA spore germination protein Clo1313_2722 PF05504 Spore germination B3/ GerAC like, C-terminal Clo1313_2723 PF09190 DALR domain Clo1313_2723 PF01406 tRNA synthetases class I (C) catalytic domain Clo1313_2724 PF00132 Bacterial transferase hexapeptide (six repeats) Clo1313_2724 PF06426 Serine acetyltransferase, N-terminal Clo1313_2731 PF07687 Peptidase dimerisation domain Clo1313_2731 PF01546 Peptidase family M20/M25/M40 Clo1313_2732 PF04070 Domain of unknown function (DUF378) Clo1313_2734 PF01709 Transcriptional regulator Clo1313_2735 PF18698 Histidine kinase sensor domain Clo1313_2735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2735 PF00989 PAS fold Clo1313_2735 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_2735 PF00672 HAMP domain Clo1313_2737 PF01205 Uncharacterized protein family UPF0029 Clo1313_2737 PF09186 Domain of unknown function (DUF1949) Clo1313_2738 PF10502 Signal peptidase, peptidase S26 Clo1313_2739 PF00293 NUDIX domain Clo1313_2740 PF16360 GTP-binding GTPase Middle Region Clo1313_2740 PF01926 50S ribosome-binding GTPase Clo1313_2740 PF13167 GTP-binding GTPase N-terminal Clo1313_2742 PF00817 impB/mucB/samB family Clo1313_2742 PF11799 impB/mucB/samB family C-terminal domain Clo1313_2743 PF00692 dUTPase Clo1313_2744 PF01136 Peptidase family U32 Clo1313_2744 PF16325 Peptidase family U32 C-terminal domain Clo1313_2745 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Clo1313_2745 PF01676 Metalloenzyme superfamily Clo1313_2747 PF00404 Dockerin type I domain Clo1313_2747 PF02011 Glycosyl hydrolase family 48 Clo1313_2750 PF00398 Ribosomal RNA adenine dimethylase Clo1313_2751 PF07501 G5 domain Clo1313_2751 PF03990 G5-linked-Ubiquitin-like domain Clo1313_2751 PF06725 3D domain Clo1313_2753 PF01026 TatD related DNase Clo1313_2754 PF09334 tRNA synthetases class I (M) Clo1313_2754 PF08264 Anticodon-binding domain of tRNA Clo1313_2754 PF01588 Putative tRNA binding domain Clo1313_2755 PF10776 Protein of unknown function (DUF2600) Clo1313_2756 PF07670 Nucleoside recognition Clo1313_2757 PF07670 Nucleoside recognition Clo1313_2758 PF18277 AbrB C-terminal domain Clo1313_2758 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Clo1313_2759 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Clo1313_2760 PF05175 Methyltransferase small domain Clo1313_2761 PF00037 4Fe-4S binding domain Clo1313_2762 PF04468 PSP1 C-terminal conserved region Clo1313_2763 PF12169 DNA polymerase III subunits gamma and tau domain III Clo1313_2764 PF03885 Protein of unknown function (DUF327) Clo1313_2766 PF01276 Orn/Lys/Arg decarboxylase, major domain Clo1313_2766 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Clo1313_2769 PF00005 ABC transporter Clo1313_2771 PF00072 Response regulator receiver domain Clo1313_2771 PF00486 Transcriptional regulatory protein, C terminal Clo1313_2772 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2773 PF01910 Thiamine-binding protein Clo1313_2774 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_2775 PF09084 NMT1/THI5 like Clo1313_2776 PF00005 ABC transporter Clo1313_2777 PF12791 Anti-sigma factor N-terminus Clo1313_2777 PF00331 Glycosyl hydrolase family 10 Clo1313_2778 PF04542 Sigma-70 region 2 Clo1313_2783 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_2784 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_2785 PF17863 AAA lid domain Clo1313_2785 PF07726 ATPase family associated with various cellular activities (AAA) Clo1313_2793 PF00331 Glycosyl hydrolase family 10 Clo1313_2793 PF00756 Putative esterase Clo1313_2793 PF00404 Dockerin type I domain Clo1313_2793 PF02018 Carbohydrate binding domain Clo1313_2794 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Clo1313_2794 PF04616 Glycosyl hydrolases family 43 Clo1313_2795 PF04616 Glycosyl hydrolases family 43 Clo1313_2795 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Clo1313_2798 PF13286 Phosphohydrolase-associated domain Clo1313_2798 PF01966 HD domain Clo1313_2800 PF13662 Toprim domain Clo1313_2800 PF02132 RecR protein Clo1313_2801 PF02575 YbaB/EbfC DNA-binding family Clo1313_2802 PF12169 DNA polymerase III subunits gamma and tau domain III Clo1313_2805 PF00942 Cellulose binding domain Clo1313_2805 PF00150 Cellulase (glycosyl hydrolase family 5) Clo1313_2805 PF00331 Glycosyl hydrolase family 10 Clo1313_2812 PF00395 S-layer homology domain Clo1313_2812 PF00963 Cohesin domain Clo1313_2815 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 Clo1313_2820 PF07722 Peptidase C26 Clo1313_2821 PF01740 STAS domain Clo1313_2823 PF00301 Rubredoxin Clo1313_2824 PF06866 Protein of unknown function (DUF1256) Clo1313_2828 PF00149 Calcineurin-like phosphoesterase Clo1313_2831 PF01197 Ribosomal protein L31 Clo1313_2832 PF07498 Rho termination factor, N-terminal domain Clo1313_2832 PF07497 Rho termination factor, RNA-binding domain Clo1313_2832 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clo1313_2835 PF02517 CPBP intramembrane metalloprotease Clo1313_2843 PF00544 Pectate lyase Clo1313_2844 PF00654 Voltage gated chloride channel Clo1313_2845 PF01171 PP-loop family Clo1313_2847 PF00483 Nucleotidyl transferase Clo1313_2848 PF03631 Virulence factor BrkB Clo1313_2849 PF01084 Ribosomal protein S18 Clo1313_2850 PF00436 Single-strand binding protein family Clo1313_2851 PF01250 Ribosomal protein S6 Clo1313_2852 PF00990 Diguanylate cyclase, GGDEF domain Clo1313_2852 PF00072 Response regulator receiver domain Clo1313_2853 PF01979 Amidohydrolase family Clo1313_2854 PF00128 Alpha amylase, catalytic domain Clo1313_2854 PF02806 Alpha amylase, C-terminal all-beta domain Clo1313_2854 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Clo1313_2856 PF03422 Carbohydrate binding module (family 6) Clo1313_2856 PF00404 Dockerin type I domain Clo1313_2856 PF00331 Glycosyl hydrolase family 10 Clo1313_2856 PF00756 Putative esterase Clo1313_2857 PF04616 Glycosyl hydrolases family 43 Clo1313_2857 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Clo1313_2858 PF03422 Carbohydrate binding module (family 6) Clo1313_2858 PF00331 Glycosyl hydrolase family 10 Clo1313_2858 PF00756 Putative esterase Clo1313_2858 PF00404 Dockerin type I domain Clo1313_2859 PF03422 Carbohydrate binding module (family 6) Clo1313_2859 PF00404 Dockerin type I domain Clo1313_2859 PF00756 Putative esterase Clo1313_2859 PF00331 Glycosyl hydrolase family 10 Clo1313_2860 PF04616 Glycosyl hydrolases family 43 Clo1313_2860 PF03422 Carbohydrate binding module (family 6) Clo1313_2861 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Clo1313_2861 PF02837 Glycosyl hydrolases family 2, sugar binding domain Clo1313_2861 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Clo1313_2861 PF16355 Domain of unknown function (DUF4982) Clo1313_2861 PF00703 Glycosyl hydrolases family 2 Clo1313_2864 PF06445 GyrI-like small molecule binding domain Clo1313_2864 PF13411 MerR HTH family regulatory protein Clo1313_2865 PF02687 FtsX-like permease family Clo1313_2866 PF00005 ABC transporter Clo1313_2867 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2868 PF00486 Transcriptional regulatory protein, C terminal Clo1313_2868 PF00072 Response regulator receiver domain Clo1313_2876 PF01227 GTP cyclohydrolase I Clo1313_2877 PF08245 Mur ligase middle domain Clo1313_2877 PF02875 Mur ligase family, glutamate ligase domain Clo1313_2877 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Clo1313_2878 PF03575 Peptidase family S51 Clo1313_2880 PF01979 Amidohydrolase family Clo1313_2881 PF01726 LexA DNA binding domain Clo1313_2881 PF00717 Peptidase S24-like Clo1313_2882 PF00180 Isocitrate/isopropylmalate dehydrogenase Clo1313_2883 PF00694 Aconitase C-terminal domain Clo1313_2884 PF00330 Aconitase family (aconitate hydratase) Clo1313_2885 PF02311 AraC-like ligand binding domain Clo1313_2885 PF12833 Helix-turn-helix domain Clo1313_2886 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Clo1313_2890 PF02561 Flagellar protein FliS Clo1313_2891 PF07196 Flagellin hook IN motif Clo1313_2891 PF02465 Flagellar hook-associated protein 2 N-terminus Clo1313_2891 PF07195 Flagellar hook-associated protein 2 C-terminus Clo1313_2893 PF16363 GDP-mannose 4,6 dehydratase Clo1313_2894 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clo1313_2897 PF00551 Formyl transferase Clo1313_2897 PF02911 Formyl transferase, C-terminal domain Clo1313_2900 PF00550 Phosphopantetheine attachment site Clo1313_2902 PF08666 SAF domain Clo1313_2902 PF03102 NeuB family Clo1313_2903 PF02348 Cytidylyltransferase Clo1313_2904 PF08241 Methyltransferase domain Clo1313_2905 PF08485 Polysaccharide biosynthesis protein C-terminal Clo1313_2905 PF02719 Polysaccharide biosynthesis protein Clo1313_2909 PF00700 Bacterial flagellin C-terminal helical region Clo1313_2909 PF00669 Bacterial flagellin N-terminal helical region Clo1313_2910 PF00700 Bacterial flagellin C-terminal helical region Clo1313_2910 PF00669 Bacterial flagellin N-terminal helical region Clo1313_2911 PF00171 Aldehyde dehydrogenase family Clo1313_2912 PF02599 Global regulator protein family Clo1313_2913 PF02623 FliW protein Clo1313_2915 PF00700 Bacterial flagellin C-terminal helical region Clo1313_2915 PF00669 Bacterial flagellin N-terminal helical region Clo1313_2916 PF00460 Flagella basal body rod protein Clo1313_2916 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Clo1313_2921 PF00156 Phosphoribosyl transferase domain Clo1313_2922 PF14490 Helix-hairpin-helix containing domain Clo1313_2922 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Clo1313_2922 PF13538 UvrD-like helicase C-terminal domain Clo1313_2924 PF02772 S-adenosylmethionine synthetase, central domain Clo1313_2924 PF00438 S-adenosylmethionine synthetase, N-terminal domain Clo1313_2924 PF02773 S-adenosylmethionine synthetase, C-terminal domain Clo1313_2926 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_2926 PF17862 AAA+ lid domain Clo1313_2926 PF06480 FtsH Extracellular Clo1313_2926 PF01434 Peptidase family M41 Clo1313_2927 PF00156 Phosphoribosyl transferase domain Clo1313_2928 PF01171 PP-loop family Clo1313_2928 PF11734 TilS substrate C-terminal domain Clo1313_2929 PF00772 DnaB-like helicase N terminal domain Clo1313_2929 PF03796 DnaB-like helicase C terminal domain Clo1313_2930 PF01281 Ribosomal protein L9, N-terminal domain Clo1313_2930 PF03948 Ribosomal protein L9, C-terminal domain Clo1313_2931 PF02272 DHHA1 domain Clo1313_2931 PF01368 DHH family Clo1313_2933 PF00800 Prephenate dehydratase Clo1313_2933 PF01842 ACT domain Clo1313_2933 PF01817 Chorismate mutase type II Clo1313_2935 PF01496 V-type ATPase 116kDa subunit family Clo1313_2936 PF00137 ATP synthase subunit C Clo1313_2937 PF01991 ATP synthase (E/31 kDa) subunit Clo1313_2939 PF01990 ATP synthase (F/14-kDa) subunit Clo1313_2940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clo1313_2940 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clo1313_2940 PF16886 ATPsynthase alpha/beta subunit N-term extension Clo1313_2941 PF02874 ATP synthase alpha/beta family, beta-barrel domain Clo1313_2941 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Clo1313_2942 PF01813 ATP synthase subunit D Clo1313_2943 PF12848 ABC transporter Clo1313_2943 PF00005 ABC transporter Clo1313_2950 PF01434 Peptidase family M41 Clo1313_2950 PF17862 AAA+ lid domain Clo1313_2950 PF00004 ATPase family associated with various cellular activities (AAA) Clo1313_2952 PF00497 Bacterial extracellular solute-binding proteins, family 3 Clo1313_2953 PF00528 Binding-protein-dependent transport system inner membrane component Clo1313_2954 PF00005 ABC transporter Clo1313_2955 PF01339 CheB methylesterase Clo1313_2955 PF00072 Response regulator receiver domain Clo1313_2956 PF03705 CheR methyltransferase, all-alpha domain Clo1313_2956 PF01739 CheR methyltransferase, SAM binding domain Clo1313_2957 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Clo1313_2958 PF07194 P2 response regulator binding domain Clo1313_2958 PF01584 CheW-like domain Clo1313_2958 PF01627 Hpt domain Clo1313_2958 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2958 PF02895 Signal transducing histidine kinase, homodimeric domain Clo1313_2959 PF01584 CheW-like domain Clo1313_2961 PF00589 Phage integrase family Clo1313_2962 PF12833 Helix-turn-helix domain Clo1313_2962 PF06445 GyrI-like small molecule binding domain Clo1313_2965 PF00005 ABC transporter Clo1313_2969 PF09827 CRISPR associated protein Cas2 Clo1313_2970 PF01867 CRISPR associated protein Cas1 Clo1313_2972 PF18019 HD domain Clo1313_2972 PF00270 DEAD/DEAH box helicase Clo1313_2972 PF18395 Cas3 C-terminal domain Clo1313_2978 PF02673 Bacitracin resistance protein BacA Clo1313_2979 PF01554 MatE Clo1313_2982 PF00795 Carbon-nitrogen hydrolase Clo1313_2987 PF02590 Predicted SPOUT methyltransferase Clo1313_2988 PF00753 Metallo-beta-lactamase superfamily Clo1313_2989 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Clo1313_2993 PF00672 HAMP domain Clo1313_2993 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Clo1313_2993 PF00512 His Kinase A (phospho-acceptor) domain Clo1313_2993 PF13426 PAS domain Clo1313_2994 PF00486 Transcriptional regulatory protein, C terminal Clo1313_2994 PF00072 Response regulator receiver domain Clo1313_2997 PF02719 Polysaccharide biosynthesis protein Clo1313_2998 PF14667 Polysaccharide biosynthesis C-terminal domain Clo1313_2999 PF13439 Glycosyltransferase Family 4 Clo1313_2999 PF00534 Glycosyl transferases group 1 Clo1313_3001 PF00534 Glycosyl transferases group 1 Clo1313_3003 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Clo1313_3003 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Clo1313_3003 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Clo1313_3007 PF02397 Bacterial sugar transferase Clo1313_3008 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Clo1313_3011 PF00963 Cohesin domain Clo1313_3011 PF00395 S-layer homology domain Clo1313_3012 PF00269 Small, acid-soluble spore proteins, alpha/beta type Clo1313_3013 PF07486 Cell Wall Hydrolase Clo1313_3015 PF00571 CBS domain Clo1313_3017 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Clo1313_3017 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Clo1313_3018 PF00890 FAD binding domain Clo1313_3018 PF02910 Fumarate reductase flavoprotein C-term Clo1313_3019 PF02445 Quinolinate synthetase A protein Clo1313_3023 PF00942 Cellulose binding domain Clo1313_3023 PF00759 Glycosyl hydrolase family 9 Clo1313_3024 PF03989 DNA gyrase C-terminal domain, beta-propeller Clo1313_3024 PF00521 DNA gyrase/topoisomerase IV, subunit A Clo1313_3025 PF17762 HTH domain found in ParB protein Clo1313_3025 PF02195 ParB-like nuclease domain Clo1313_3026 PF02527 rRNA small subunit methyltransferase G Clo1313_3027 PF01134 Glucose inhibited division protein A Clo1313_3027 PF13932 GidA associated domain Clo1313_3028 PF10396 GTP-binding protein TrmE N-terminus Clo1313_3028 PF01926 50S ribosome-binding GTPase Clo1313_3028 PF12631 MnmE helical domain Clo1313_3029 PF14804 Jag N-terminus Clo1313_3029 PF01424 R3H domain Clo1313_3030 PF02096 60Kd inner membrane protein Clo1313_3031 PF01809 Putative membrane protein insertion efficiency factor Clo1313_3032 PF00825 Ribonuclease P Clo1313_3033 PF00468 Ribosomal protein L34