locus-tag class description LQRI_0001 PF00308 Bacterial dnaA protein LQRI_0001 PF08299 Bacterial dnaA protein helix-turn-helix LQRI_0001 PF11638 DnaA N-terminal domain LQRI_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain LQRI_0002 PF02767 DNA polymerase III beta subunit, central domain LQRI_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain LQRI_0004 PF02463 RecF/RecN/SMC N terminal domain LQRI_0006 PF00204 DNA gyrase B LQRI_0006 PF00986 DNA gyrase B subunit, carboxyl terminus LQRI_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0006 PF01751 Toprim domain LQRI_0007 PF13614 AAA domain LQRI_0008 PF17762 HTH domain found in ParB protein LQRI_0008 PF02195 ParB-like nuclease domain LQRI_0011 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQRI_0011 PF02403 Seryl-tRNA synthetase N-terminal domain LQRI_0012 PF07690 Major Facilitator Superfamily LQRI_0014 PF00395 S-layer homology domain LQRI_0016 PF04294 VanW like protein LQRI_0017 PF01476 LysM domain LQRI_0017 PF00246 Zinc carboxypeptidase LQRI_0020 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LQRI_0021 PF00037 4Fe-4S binding domain LQRI_0022 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LQRI_0022 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LQRI_0023 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQRI_0029 PF01268 Formate--tetrahydrofolate ligase LQRI_0030 PF05582 YabG peptidase U57 LQRI_0033 PF00288 GHMP kinases N terminal domain LQRI_0033 PF08544 GHMP kinases C terminal LQRI_0034 PF07729 FCD domain LQRI_0034 PF00392 Bacterial regulatory proteins, gntR family LQRI_0035 PF00403 Heavy-metal-associated domain LQRI_0037 PF17862 AAA+ lid domain LQRI_0037 PF01434 Peptidase family M41 LQRI_0037 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_0042 PF13514 AAA domain LQRI_0043 PF00877 NlpC/P60 family LQRI_0044 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase LQRI_0044 PF04101 Glycosyltransferase family 28 C-terminal domain LQRI_0046 PF01471 Putative peptidoglycan binding domain LQRI_0046 PF07486 Cell Wall Hydrolase LQRI_0047 PF14620 YpeB sporulation LQRI_0049 PF11638 DnaA N-terminal domain LQRI_0049 PF08299 Bacterial dnaA protein helix-turn-helix LQRI_0049 PF00308 Bacterial dnaA protein LQRI_0051 PF01966 HD domain LQRI_0054 PF03442 Carbohydrate binding domain X2 LQRI_0054 PF00942 Cellulose binding domain LQRI_0054 PF00963 Cohesin domain LQRI_0056 PF01618 MotA/TolQ/ExbB proton channel family LQRI_0057 PF00691 OmpA family LQRI_0057 PF13677 Membrane MotB of proton-channel complex MotA/MotB LQRI_0058 PF07136 Protein of unknown function (DUF1385) LQRI_0059 PF17827 PrmC N-terminal domain LQRI_0059 PF05175 Methyltransferase small domain LQRI_0061 PF10531 SLBB domain LQRI_0061 PF13375 RnfC Barrel sandwich hybrid domain LQRI_0061 PF13237 4Fe-4S dicluster domain LQRI_0061 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LQRI_0062 PF03116 NQR2, RnfD, RnfE family LQRI_0063 PF04205 FMN-binding domain LQRI_0064 PF02508 Rnf-Nqr subunit, membrane protein LQRI_0065 PF02508 Rnf-Nqr subunit, membrane protein LQRI_0066 PF04060 Putative Fe-S cluster LQRI_0068 PF01202 Shikimate kinase LQRI_0072 PF08220 DeoR-like helix-turn-helix domain LQRI_0072 PF00455 DeoR C terminal sensor domain LQRI_0073 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LQRI_0073 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LQRI_0074 PF00456 Transketolase, thiamine diphosphate binding domain LQRI_0075 PF02779 Transketolase, pyrimidine binding domain LQRI_0075 PF02780 Transketolase, C-terminal domain LQRI_0076 PF00107 Zinc-binding dehydrogenase LQRI_0076 PF08240 Alcohol dehydrogenase GroES-like domain LQRI_0077 PF13407 Periplasmic binding protein domain LQRI_0078 PF00005 ABC transporter LQRI_0079 PF02653 Branched-chain amino acid transport system / permease component LQRI_0080 PF00300 Histidine phosphatase superfamily (branch 1) LQRI_0081 PF04434 SWIM zinc finger LQRI_0081 PF00271 Helicase conserved C-terminal domain LQRI_0081 PF00176 SNF2 family N-terminal domain LQRI_0082 PF08439 Oligopeptidase F LQRI_0082 PF01432 Peptidase family M3 LQRI_0084 PF00395 S-layer homology domain LQRI_0084 PF00331 Glycosyl hydrolase family 10 LQRI_0084 PF06452 Carbohydrate family 9 binding domain-like LQRI_0084 PF02018 Carbohydrate binding domain LQRI_0085 PF14437 MafB19-like deaminase LQRI_0087 PF07883 Cupin domain LQRI_0088 PF06725 3D domain LQRI_0089 PF00356 Bacterial regulatory proteins, lacI family LQRI_0090 PF00395 S-layer homology domain LQRI_0090 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_0090 PF03424 Carbohydrate binding domain (family 17/28) LQRI_0091 PF05582 YabG peptidase U57 LQRI_0092 PF01131 DNA topoisomerase LQRI_0092 PF01751 Toprim domain LQRI_0094 PF00924 Mechanosensitive ion channel LQRI_0096 PF13180 PDZ domain LQRI_0098 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQRI_0099 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQRI_0099 PF00205 Thiamine pyrophosphate enzyme, central domain LQRI_0099 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQRI_0100 PF10369 Small subunit of acetolactate synthase LQRI_0101 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LQRI_0101 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LQRI_0102 PF00682 HMGL-like LQRI_0102 PF08502 LeuA allosteric (dimerisation) domain LQRI_0104 PF04542 Sigma-70 region 2 LQRI_0105 PF12791 Anti-sigma factor N-terminus LQRI_0107 PF02082 Transcriptional regulator LQRI_0108 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LQRI_0108 PF01488 Shikimate / quinate 5-dehydrogenase LQRI_0109 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LQRI_0109 PF01488 Shikimate / quinate 5-dehydrogenase LQRI_0110 PF03900 Porphobilinogen deaminase, C-terminal domain LQRI_0110 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LQRI_0111 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQRI_0111 PF02602 Uroporphyrinogen-III synthase HemD LQRI_0112 PF00490 Delta-aminolevulinic acid dehydratase LQRI_0113 PF00202 Aminotransferase class-III LQRI_0115 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_0116 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_0117 PF17850 CysA C-terminal regulatory domain LQRI_0117 PF12857 TOBE-like domain LQRI_0117 PF00005 ABC transporter LQRI_0118 PF01507 Phosphoadenosine phosphosulfate reductase family LQRI_0119 PF01507 Phosphoadenosine phosphosulfate reductase family LQRI_0120 PF00009 Elongation factor Tu GTP binding domain LQRI_0122 PF00899 ThiF family LQRI_0124 PF13187 4Fe-4S dicluster domain LQRI_0124 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQRI_0124 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LQRI_0127 PF08281 Sigma-70, region 4 LQRI_0127 PF04542 Sigma-70 region 2 LQRI_0134 PF06964 Alpha-L-arabinofuranosidase C-terminal domain LQRI_0136 PF00404 Dockerin type I domain LQRI_0136 PF02011 Glycosyl hydrolase family 48 LQRI_0138 PF06463 Molybdenum Cofactor Synthesis C LQRI_0138 PF04055 Radical SAM superfamily LQRI_0139 PF06463 Molybdenum Cofactor Synthesis C LQRI_0139 PF04055 Radical SAM superfamily LQRI_0140 PF06463 Molybdenum Cofactor Synthesis C LQRI_0140 PF04055 Radical SAM superfamily LQRI_0143 PF06463 Molybdenum Cofactor Synthesis C LQRI_0143 PF04055 Radical SAM superfamily LQRI_0144 PF00535 Glycosyl transferase family 2 LQRI_0145 PF16363 GDP-mannose 4,6 dehydratase LQRI_0146 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQRI_0147 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LQRI_0148 PF16363 GDP-mannose 4,6 dehydratase LQRI_0149 PF00483 Nucleotidyl transferase LQRI_0151 PF00872 Transposase, Mutator family LQRI_0153 PF02310 B12 binding domain LQRI_0153 PF04055 Radical SAM superfamily LQRI_0161 PF00005 ABC transporter LQRI_0162 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_0165 PF01928 CYTH domain LQRI_0166 PF02541 Ppx/GppA phosphatase family LQRI_0167 PF00465 Iron-containing alcohol dehydrogenase LQRI_0169 PF00809 Pterin binding enzyme LQRI_0170 PF02152 Dihydroneopterin aldolase LQRI_0171 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LQRI_0173 PF08279 HTH domain LQRI_0173 PF03099 Biotin/lipoate A/B protein ligase family LQRI_0173 PF02237 Biotin protein ligase C terminal domain LQRI_0176 PF03309 Type III pantothenate kinase LQRI_0178 PF00331 Glycosyl hydrolase family 10 LQRI_0178 PF12791 Anti-sigma factor N-terminus LQRI_0181 PF00472 RF-1 domain LQRI_0181 PF03462 PCRF domain LQRI_0182 PF02535 ZIP Zinc transporter LQRI_0183 PF03481 Putative GTP-binding controlling metal-binding LQRI_0183 PF01300 Telomere recombination LQRI_0184 PF01451 Low molecular weight phosphotyrosine protein phosphatase LQRI_0185 PF02502 Ribose/Galactose Isomerase LQRI_0187 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQRI_0188 PF00953 Glycosyl transferase family 4 LQRI_0189 PF02350 UDP-N-acetylglucosamine 2-epimerase LQRI_0190 PF00119 ATP synthase A chain LQRI_0191 PF00137 ATP synthase subunit C LQRI_0192 PF00430 ATP synthase B/B' CF(0) LQRI_0193 PF00213 ATP synthase delta (OSCP) subunit LQRI_0194 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQRI_0194 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQRI_0194 PF00306 ATP synthase alpha/beta chain, C terminal domain LQRI_0195 PF00231 ATP synthase LQRI_0196 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQRI_0196 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQRI_0197 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LQRI_0197 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LQRI_0201 PF00963 Cohesin domain LQRI_0201 PF00395 S-layer homology domain LQRI_0203 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQRI_0204 PF08486 Stage II sporulation protein LQRI_0206 PF12116 Stage III sporulation protein D LQRI_0208 PF00460 Flagella basal body rod protein LQRI_0208 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQRI_0209 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQRI_0209 PF00460 Flagella basal body rod protein LQRI_0212 PF02687 FtsX-like permease family LQRI_0212 PF12704 MacB-like periplasmic core domain LQRI_0212 PF00005 ABC transporter LQRI_0213 PF07977 FabA-like domain LQRI_0214 PF01225 Mur ligase family, catalytic domain LQRI_0214 PF02875 Mur ligase family, glutamate ligase domain LQRI_0214 PF08245 Mur ligase middle domain LQRI_0215 PF00156 Phosphoribosyl transferase domain LQRI_0215 PF09182 Bacterial purine repressor, N-terminal LQRI_0216 PF04026 SpoVG LQRI_0217 PF00132 Bacterial transferase hexapeptide (six repeats) LQRI_0217 PF14602 Hexapeptide repeat of succinyl-transferase LQRI_0217 PF00483 Nucleotidyl transferase LQRI_0218 PF14572 Phosphoribosyl synthetase-associated domain LQRI_0218 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LQRI_0219 PF01195 Peptidyl-tRNA hydrolase LQRI_0220 PF03461 TRCF domain LQRI_0220 PF17757 UvrB interaction domain LQRI_0220 PF02559 CarD-like/TRCF domain LQRI_0220 PF00271 Helicase conserved C-terminal domain LQRI_0220 PF00270 DEAD/DEAH box helicase LQRI_0223 PF12833 Helix-turn-helix domain LQRI_0223 PF02311 AraC-like ligand binding domain LQRI_0224 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LQRI_0224 PF01243 Pyridoxamine 5'-phosphate oxidase LQRI_0225 PF03023 Lipid II flippase MurJ LQRI_0226 PF13477 Glycosyl transferase 4-like LQRI_0226 PF00534 Glycosyl transferases group 1 LQRI_0228 PF02348 Cytidylyltransferase LQRI_0228 PF13472 GDSL-like Lipase/Acylhydrolase family LQRI_0229 PF02350 UDP-N-acetylglucosamine 2-epimerase LQRI_0230 PF03102 NeuB family LQRI_0230 PF08666 SAF domain LQRI_0232 PF00483 Nucleotidyl transferase LQRI_0233 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQRI_0234 PF01370 NAD dependent epimerase/dehydratase family LQRI_0236 PF07478 D-ala D-ala ligase C-terminus LQRI_0236 PF01820 D-ala D-ala ligase N-terminus LQRI_0237 PF02397 Bacterial sugar transferase LQRI_0239 PF02719 Polysaccharide biosynthesis protein LQRI_0242 PF13614 AAA domain LQRI_0244 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LQRI_0244 PF15714 Stage V sporulation protein T C-terminal, transcription factor LQRI_0245 PF03819 MazG nucleotide pyrophosphohydrolase domain LQRI_0246 PF00216 Bacterial DNA-binding protein LQRI_0247 PF01479 S4 domain LQRI_0251 PF00575 S1 RNA binding domain LQRI_0252 PF00672 HAMP domain LQRI_0252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_0253 PF03109 ABC1 family LQRI_0255 PF00689 Cation transporting ATPase, C-terminus LQRI_0255 PF00690 Cation transporter/ATPase, N-terminus LQRI_0270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0270 PF00989 PAS fold LQRI_0270 PF00512 His Kinase A (phospho-acceptor) domain LQRI_0273 PF00595 PDZ domain LQRI_0273 PF03572 Peptidase family S41 LQRI_0274 PF07228 Stage II sporulation protein E (SpoIIE) LQRI_0279 PF01207 Dihydrouridine synthase (Dus) LQRI_0280 PF02491 SHS2 domain inserted in FTSA LQRI_0281 PF03061 Thioesterase superfamily LQRI_0282 PF01943 Polysaccharide biosynthesis protein LQRI_0282 PF14667 Polysaccharide biosynthesis C-terminal domain LQRI_0284 PF00155 Aminotransferase class I and II LQRI_0284 PF00392 Bacterial regulatory proteins, gntR family LQRI_0286 PF00132 Bacterial transferase hexapeptide (six repeats) LQRI_0291 PF01256 Carbohydrate kinase LQRI_0291 PF03853 YjeF-related protein N-terminus LQRI_0292 PF00842 Alanine racemase, C-terminal domain LQRI_0292 PF01168 Alanine racemase, N-terminal domain LQRI_0293 PF01402 Ribbon-helix-helix protein, copG family LQRI_0294 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LQRI_0296 PF03808 Glycosyl transferase WecB/TagA/CpsF family LQRI_0297 PF00534 Glycosyl transferases group 1 LQRI_0297 PF13579 Glycosyl transferase 4-like domain LQRI_0298 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LQRI_0298 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LQRI_0299 PF00456 Transketolase, thiamine diphosphate binding domain LQRI_0300 PF02779 Transketolase, pyrimidine binding domain LQRI_0300 PF02780 Transketolase, C-terminal domain LQRI_0301 PF00005 ABC transporter LQRI_0308 PF00920 Dehydratase family LQRI_0309 PF00205 Thiamine pyrophosphate enzyme, central domain LQRI_0309 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LQRI_0309 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQRI_0310 PF00471 Ribosomal protein L33 LQRI_0311 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LQRI_0312 PF00467 KOW motif LQRI_0312 PF02357 Transcription termination factor nusG LQRI_0313 PF00298 Ribosomal protein L11, RNA binding domain LQRI_0313 PF03946 Ribosomal protein L11, N-terminal domain LQRI_0314 PF00687 Ribosomal protein L1p/L10e family LQRI_0315 PF00466 Ribosomal protein L10 LQRI_0316 PF00542 Ribosomal protein L7/L12 C-terminal domain LQRI_0316 PF16320 Ribosomal protein L7/L12 dimerisation domain LQRI_0317 PF04563 RNA polymerase beta subunit LQRI_0317 PF04561 RNA polymerase Rpb2, domain 2 LQRI_0317 PF04565 RNA polymerase Rpb2, domain 3 LQRI_0317 PF10385 RNA polymerase beta subunit external 1 domain LQRI_0317 PF04560 RNA polymerase Rpb2, domain 7 LQRI_0317 PF00562 RNA polymerase Rpb2, domain 6 LQRI_0318 PF04997 RNA polymerase Rpb1, domain 1 LQRI_0318 PF04983 RNA polymerase Rpb1, domain 3 LQRI_0318 PF05000 RNA polymerase Rpb1, domain 4 LQRI_0318 PF04998 RNA polymerase Rpb1, domain 5 LQRI_0318 PF00623 RNA polymerase Rpb1, domain 2 LQRI_0319 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LQRI_0320 PF00164 Ribosomal protein S12/S23 LQRI_0321 PF00177 Ribosomal protein S7p/S5e LQRI_0322 PF03144 Elongation factor Tu domain 2 LQRI_0322 PF00679 Elongation factor G C-terminus LQRI_0322 PF14492 Elongation Factor G, domain II LQRI_0322 PF03764 Elongation factor G, domain IV LQRI_0322 PF00009 Elongation factor Tu GTP binding domain LQRI_0323 PF03143 Elongation factor Tu C-terminal domain LQRI_0323 PF03144 Elongation factor Tu domain 2 LQRI_0323 PF00009 Elongation factor Tu GTP binding domain LQRI_0324 PF04542 Sigma-70 region 2 LQRI_0324 PF08281 Sigma-70, region 4 LQRI_0327 PF04294 VanW like protein LQRI_0328 PF00381 PTS HPr component phosphorylation site LQRI_0329 PF05524 PEP-utilising enzyme, N-terminal LQRI_0329 PF02896 PEP-utilising enzyme, TIM barrel domain LQRI_0329 PF00391 PEP-utilising enzyme, mobile domain LQRI_0330 PF01541 GIY-YIG catalytic domain LQRI_0330 PF02151 UvrB/uvrC motif LQRI_0330 PF08459 UvrC Helix-hairpin-helix N-terminal LQRI_0332 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LQRI_0332 PF05698 Bacterial trigger factor protein (TF) C-terminus LQRI_0332 PF05697 Bacterial trigger factor protein (TF) LQRI_0333 PF00574 Clp protease LQRI_0334 PF07724 AAA domain (Cdc48 subfamily) LQRI_0334 PF10431 C-terminal, D2-small domain, of ClpB protein LQRI_0334 PF06689 ClpX C4-type zinc finger LQRI_0335 PF05362 Lon protease (S16) C-terminal proteolytic domain LQRI_0335 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_0336 PF00814 Glycoprotease family LQRI_0337 PF01464 Transglycosylase SLT domain LQRI_0340 PF02811 PHP domain LQRI_0341 PF01668 SmpB protein LQRI_0349 PF03471 Transporter associated domain LQRI_0349 PF00999 Sodium/hydrogen exchanger family LQRI_0349 PF02080 TrkA-C domain LQRI_0351 PF12833 Helix-turn-helix domain LQRI_0351 PF06445 GyrI-like small molecule binding domain LQRI_0352 PF00759 Glycosyl hydrolase family 9 LQRI_0352 PF00942 Cellulose binding domain LQRI_0353 PF00942 Cellulose binding domain LQRI_0353 PF00759 Glycosyl hydrolase family 9 LQRI_0353 PF00404 Dockerin type I domain LQRI_0360 PF00149 Calcineurin-like phosphoesterase LQRI_0361 PF04405 Domain of Unknown function (DUF542) LQRI_0361 PF01814 Hemerythrin HHE cation binding domain LQRI_0362 PF00258 Flavodoxin LQRI_0362 PF00753 Metallo-beta-lactamase superfamily LQRI_0362 PF00301 Rubredoxin LQRI_0363 PF13545 Crp-like helix-turn-helix domain LQRI_0363 PF00027 Cyclic nucleotide-binding domain LQRI_0367 PF04973 Nicotinamide mononucleotide transporter LQRI_0368 PF01381 Helix-turn-helix LQRI_0368 PF13521 AAA domain LQRI_0373 PF00395 S-layer homology domain LQRI_0373 PF00963 Cohesin domain LQRI_0375 PF02310 B12 binding domain LQRI_0375 PF02607 B12 binding domain LQRI_0376 PF01208 Uroporphyrinogen decarboxylase (URO-D) LQRI_0378 PF01208 Uroporphyrinogen decarboxylase (URO-D) LQRI_0379 PF00970 Oxidoreductase FAD-binding domain LQRI_0379 PF00175 Oxidoreductase NAD-binding domain LQRI_0379 PF00111 2Fe-2S iron-sulfur cluster binding domain LQRI_0381 PF09084 NMT1/THI5 like LQRI_0382 PF00005 ABC transporter LQRI_0383 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_0384 PF00501 AMP-binding enzyme LQRI_0384 PF14535 AMP-binding enzyme C-terminal domain LQRI_0385 PF00155 Aminotransferase class I and II LQRI_0386 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LQRI_0388 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LQRI_0388 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LQRI_0389 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQRI_0391 PF01042 Endoribonuclease L-PSP LQRI_0392 PF01053 Cys/Met metabolism PLP-dependent enzyme LQRI_0393 PF00155 Aminotransferase class I and II LQRI_0394 PF03063 Prismane/CO dehydrogenase family LQRI_0396 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_0397 PF00005 ABC transporter LQRI_0399 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_0400 PF00356 Bacterial regulatory proteins, lacI family LQRI_0401 PF00722 Glycosyl hydrolases family 16 LQRI_0402 PF02690 Na+/Pi-cotransporter LQRI_0403 PF02156 Glycosyl hydrolase family 26 LQRI_0404 PF00942 Cellulose binding domain LQRI_0404 PF00759 Glycosyl hydrolase family 9 LQRI_0405 PF00486 Transcriptional regulatory protein, C terminal LQRI_0405 PF00072 Response regulator receiver domain LQRI_0406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0406 PF00512 His Kinase A (phospho-acceptor) domain LQRI_0407 PF01921 tRNA synthetases class I (K) LQRI_0408 PF01584 CheW-like domain LQRI_0409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0409 PF02895 Signal transducing histidine kinase, homodimeric domain LQRI_0409 PF01584 CheW-like domain LQRI_0409 PF00072 Response regulator receiver domain LQRI_0409 PF01627 Hpt domain LQRI_0410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_0411 PF01739 CheR methyltransferase, SAM binding domain LQRI_0411 PF03705 CheR methyltransferase, all-alpha domain LQRI_0412 PF00072 Response regulator receiver domain LQRI_0412 PF01339 CheB methylesterase LQRI_0413 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LQRI_0413 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LQRI_0414 PF00571 CBS domain LQRI_0414 PF03471 Transporter associated domain LQRI_0414 PF01595 Cyclin M transmembrane N-terminal domain LQRI_0416 PF00404 Dockerin type I domain LQRI_0416 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_0418 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LQRI_0418 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LQRI_0419 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LQRI_0419 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LQRI_0420 PF13361 UvrD-like helicase C-terminal domain LQRI_0420 PF00580 UvrD/REP helicase N-terminal domain LQRI_0423 PF00331 Glycosyl hydrolase family 10 LQRI_0423 PF00756 Putative esterase LQRI_0423 PF00404 Dockerin type I domain LQRI_0423 PF02018 Carbohydrate binding domain LQRI_0424 PF13393 Histidyl-tRNA synthetase LQRI_0425 PF01634 ATP phosphoribosyltransferase LQRI_0426 PF00815 Histidinol dehydrogenase LQRI_0427 PF00155 Aminotransferase class I and II LQRI_0428 PF00475 Imidazoleglycerol-phosphate dehydratase LQRI_0429 PF01259 SAICAR synthetase LQRI_0430 PF00117 Glutamine amidotransferase class-I LQRI_0431 PF00977 Histidine biosynthesis protein LQRI_0432 PF00977 Histidine biosynthesis protein LQRI_0433 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LQRI_0433 PF01502 Phosphoribosyl-AMP cyclohydrolase LQRI_0435 PF00166 Chaperonin 10 Kd subunit LQRI_0436 PF00118 TCP-1/cpn60 chaperonin family LQRI_0439 PF00704 Glycosyl hydrolases family 18 LQRI_0441 PF01272 Transcription elongation factor, GreA/GreB, C-term LQRI_0441 PF03449 Transcription elongation factor, N-terminal LQRI_0442 PF01740 STAS domain LQRI_0443 PF13581 Histidine kinase-like ATPase domain LQRI_0444 PF04545 Sigma-70, region 4 LQRI_0444 PF04542 Sigma-70 region 2 LQRI_0444 PF04539 Sigma-70 region 3 LQRI_0449 PF00338 Ribosomal protein S10p/S20e LQRI_0450 PF00297 Ribosomal protein L3 LQRI_0451 PF00573 Ribosomal protein L4/L1 family LQRI_0452 PF00276 Ribosomal protein L23 LQRI_0453 PF03947 Ribosomal Proteins L2, C-terminal domain LQRI_0453 PF00181 Ribosomal Proteins L2, RNA binding domain LQRI_0454 PF00203 Ribosomal protein S19 LQRI_0455 PF00237 Ribosomal protein L22p/L17e LQRI_0456 PF07650 KH domain LQRI_0456 PF00189 Ribosomal protein S3, C-terminal domain LQRI_0457 PF00252 Ribosomal protein L16p/L10e LQRI_0458 PF00831 Ribosomal L29 protein LQRI_0459 PF00366 Ribosomal protein S17 LQRI_0460 PF00238 Ribosomal protein L14p/L23e LQRI_0461 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LQRI_0462 PF00281 Ribosomal protein L5 LQRI_0462 PF00673 ribosomal L5P family C-terminus LQRI_0463 PF00410 Ribosomal protein S8 LQRI_0464 PF00347 Ribosomal protein L6 LQRI_0465 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LQRI_0466 PF03719 Ribosomal protein S5, C-terminal domain LQRI_0466 PF00333 Ribosomal protein S5, N-terminal domain LQRI_0467 PF00327 Ribosomal protein L30p/L7e LQRI_0468 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LQRI_0469 PF00344 SecY translocase LQRI_0470 PF05191 Adenylate kinase, active site lid LQRI_0471 PF00557 Metallopeptidase family M24 LQRI_0473 PF01176 Translation initiation factor 1A / IF-1 LQRI_0474 PF00444 Ribosomal protein L36 LQRI_0475 PF00416 Ribosomal protein S13/S18 LQRI_0476 PF00411 Ribosomal protein S11 LQRI_0477 PF00163 Ribosomal protein S4/S9 N-terminal domain LQRI_0477 PF01479 S4 domain LQRI_0478 PF01000 RNA polymerase Rpb3/RpoA insert domain LQRI_0478 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LQRI_0478 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LQRI_0479 PF01196 Ribosomal protein L17 LQRI_0480 PF00005 ABC transporter LQRI_0481 PF05175 Methyltransferase small domain LQRI_0484 PF01555 DNA methylase LQRI_0490 PF07508 Recombinase LQRI_0490 PF13408 Recombinase zinc beta ribbon domain LQRI_0490 PF00239 Resolvase, N terminal domain LQRI_0491 PF00005 ABC transporter LQRI_0492 PF02361 Cobalt transport protein LQRI_0493 PF00480 ROK family LQRI_0494 PF01416 tRNA pseudouridine synthase LQRI_0495 PF02559 CarD-like/TRCF domain LQRI_0496 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LQRI_0497 PF00005 ABC transporter LQRI_0498 PF12679 ABC-2 family transporter protein LQRI_0499 PF00512 His Kinase A (phospho-acceptor) domain LQRI_0499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0499 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQRI_0500 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LQRI_0500 PF17203 Single cache domain 3 LQRI_0500 PF00989 PAS fold LQRI_0500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0501 PF02542 YgbB family LQRI_0502 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQRI_0502 PF03129 Anticodon binding domain LQRI_0502 PF04073 Aminoacyl-tRNA editing domain LQRI_0503 PF00188 Cysteine-rich secretory protein family LQRI_0504 PF00404 Dockerin type I domain LQRI_0504 PF00722 Glycosyl hydrolases family 16 LQRI_0505 PF16990 Carbohydrate binding module (family 35) LQRI_0505 PF00703 Glycosyl hydrolases family 2 LQRI_0505 PF02837 Glycosyl hydrolases family 2, sugar binding domain LQRI_0505 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain LQRI_0506 PF00404 Dockerin type I domain LQRI_0506 PF00963 Cohesin domain LQRI_0506 PF00942 Cellulose binding domain LQRI_0509 PF02796 Helix-turn-helix domain of resolvase LQRI_0509 PF00665 Integrase core domain LQRI_0517 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LQRI_0518 PF00005 ABC transporter LQRI_0518 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LQRI_0519 PF00005 ABC transporter LQRI_0519 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LQRI_0520 PF12911 N-terminal TM domain of oligopeptide transport permease C LQRI_0520 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_0521 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_0525 PF00392 Bacterial regulatory proteins, gntR family LQRI_0526 PF00005 ABC transporter LQRI_0528 PF00457 Glycosyl hydrolases family 11 LQRI_0528 PF03422 Carbohydrate binding module (family 6) LQRI_0529 PF00457 Glycosyl hydrolases family 11 LQRI_0529 PF03422 Carbohydrate binding module (family 6) LQRI_0530 PF03749 Sugar fermentation stimulation protein RE domain LQRI_0530 PF17746 SfsA N-terminal OB domain LQRI_0531 PF12791 Anti-sigma factor N-terminus LQRI_0532 PF04542 Sigma-70 region 2 LQRI_0539 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_0539 PF00672 HAMP domain LQRI_0539 PF02743 Cache domain LQRI_0540 PF00005 ABC transporter LQRI_0548 PF01625 Peptide methionine sulfoxide reductase LQRI_0549 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LQRI_0549 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_0554 PF01965 DJ-1/PfpI family LQRI_0556 PF00005 ABC transporter LQRI_0556 PF00664 ABC transporter transmembrane region LQRI_0558 PF01384 Phosphate transporter family LQRI_0561 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LQRI_0561 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_0561 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LQRI_0562 PF01476 LysM domain LQRI_0563 PF01476 LysM domain LQRI_0563 PF03734 L,D-transpeptidase catalytic domain LQRI_0565 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LQRI_0565 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LQRI_0569 PF17189 Glycosyl hydrolase family 30 beta sandwich domain LQRI_0570 PF00586 AIR synthase related protein, N-terminal domain LQRI_0570 PF02769 AIR synthase related protein, C-terminal domain LQRI_0571 PF01924 Hydrogenase formation hypA family LQRI_0572 PF01455 HupF/HypC family LQRI_0573 PF07503 HypF finger LQRI_0573 PF00708 Acylphosphatase LQRI_0573 PF17788 HypF Kae1-like domain LQRI_0573 PF01300 Telomere recombination LQRI_0574 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQRI_0577 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LQRI_0577 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LQRI_0577 PF00374 Nickel-dependent hydrogenase LQRI_0579 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LQRI_0581 PF13244 Domain of unknown function (DUF4040) LQRI_0581 PF00361 Proton-conducting membrane transporter LQRI_0581 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LQRI_0583 PF03449 Transcription elongation factor, N-terminal LQRI_0583 PF01272 Transcription elongation factor, GreA/GreB, C-term LQRI_0584 PF00285 Citrate synthase, C-terminal domain LQRI_0585 PF00282 Pyridoxal-dependent decarboxylase conserved domain LQRI_0586 PF01584 CheW-like domain LQRI_0587 PF00672 HAMP domain LQRI_0587 PF02203 Tar ligand binding domain homologue LQRI_0587 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_0592 PF01842 ACT domain LQRI_0592 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LQRI_0592 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LQRI_0593 PF00672 HAMP domain LQRI_0593 PF02743 Cache domain LQRI_0593 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_0596 PF17854 FtsK alpha domain LQRI_0596 PF09397 Ftsk gamma domain LQRI_0596 PF01580 FtsK/SpoIIIE family LQRI_0600 PF00690 Cation transporter/ATPase, N-terminus LQRI_0600 PF00689 Cation transporting ATPase, C-terminus LQRI_0603 PF01098 Cell cycle protein LQRI_0604 PF00905 Penicillin binding protein transpeptidase domain LQRI_0605 PF04002 RadC-like JAB domain LQRI_0607 PF00041 Fibronectin type III domain LQRI_0607 PF00704 Glycosyl hydrolases family 18 LQRI_0608 PF00872 Transposase, Mutator family LQRI_0609 PF05593 RHS Repeat LQRI_0617 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family LQRI_0620 PF05448 Acetyl xylan esterase (AXE1) LQRI_0625 PF00005 ABC transporter LQRI_0627 PF00672 HAMP domain LQRI_0627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0627 PF00512 His Kinase A (phospho-acceptor) domain LQRI_0627 PF13426 PAS domain LQRI_0628 PF00072 Response regulator receiver domain LQRI_0628 PF00486 Transcriptional regulatory protein, C terminal LQRI_0629 PF06866 Protein of unknown function (DUF1256) LQRI_0632 PF13419 Haloacid dehalogenase-like hydrolase LQRI_0634 PF12034 Domain of unknown function (DUF3520) LQRI_0634 PF00092 von Willebrand factor type A domain LQRI_0634 PF12450 von Willebrand factor LQRI_0635 PF04055 Radical SAM superfamily LQRI_0635 PF13186 Iron-sulfur cluster-binding domain LQRI_0636 PF00942 Cellulose binding domain LQRI_0636 PF00963 Cohesin domain LQRI_0636 PF00404 Dockerin type I domain LQRI_0637 PF00395 S-layer homology domain LQRI_0637 PF00963 Cohesin domain LQRI_0638 PF00963 Cohesin domain LQRI_0638 PF00395 S-layer homology domain LQRI_0639 PF00963 Cohesin domain LQRI_0639 PF00395 S-layer homology domain LQRI_0643 PF02926 THUMP domain LQRI_0643 PF01170 Putative RNA methylase family UPF0020 LQRI_0644 PF04397 LytTr DNA-binding domain LQRI_0644 PF00072 Response regulator receiver domain LQRI_0645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQRI_0646 PF00072 Response regulator receiver domain LQRI_0646 PF08769 Sporulation initiation factor Spo0A C terminal LQRI_0647 PF00216 Bacterial DNA-binding protein LQRI_0649 PF05681 Fumarate hydratase (Fumerase) LQRI_0650 PF05681 Fumarate hydratase (Fumerase) LQRI_0650 PF05683 Fumarase C-terminus LQRI_0652 PF00709 Adenylosuccinate synthetase LQRI_0653 PF01797 Transposase IS200 like LQRI_0654 PF00535 Glycosyl transferase family 2 LQRI_0657 PF00535 Glycosyl transferase family 2 LQRI_0659 PF00535 Glycosyl transferase family 2 LQRI_0660 PF01678 Diaminopimelate epimerase LQRI_0661 PF00155 Aminotransferase class I and II LQRI_0662 PF03816 Cell envelope-related transcriptional attenuator domain LQRI_0664 PF01869 BadF/BadG/BcrA/BcrD ATPase family LQRI_0665 PF06508 Queuosine biosynthesis protein QueC LQRI_0666 PF01242 6-pyruvoyl tetrahydropterin synthase LQRI_0667 PF04055 Radical SAM superfamily LQRI_0668 PF03167 Uracil DNA glycosylase superfamily LQRI_0669 PF03167 Uracil DNA glycosylase superfamily LQRI_0672 PF00899 ThiF family LQRI_0673 PF01797 Transposase IS200 like LQRI_0676 PF04041 beta-1,4-mannooligosaccharide phosphorylase LQRI_0677 PF00483 Nucleotidyl transferase LQRI_0680 PF01238 Phosphomannose isomerase type I LQRI_0681 PF02535 ZIP Zinc transporter LQRI_0682 PF01814 Hemerythrin HHE cation binding domain LQRI_0683 PF01613 Flavin reductase like domain LQRI_0683 PF00301 Rubredoxin LQRI_0684 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LQRI_0684 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LQRI_0684 PF10371 Domain of unknown function LQRI_0684 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LQRI_0684 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LQRI_0686 PF00963 Cohesin domain LQRI_0686 PF00395 S-layer homology domain LQRI_0688 PF00501 AMP-binding enzyme LQRI_0688 PF13193 AMP-binding enzyme C-terminal domain LQRI_0689 PF00011 Hsp20/alpha crystallin family LQRI_0690 PF01467 Cytidylyltransferase-like LQRI_0690 PF00293 NUDIX domain LQRI_0693 PF03600 Citrate transporter LQRI_0696 PF00404 Dockerin type I domain LQRI_0696 PF01270 Glycosyl hydrolases family 8 LQRI_0697 PF00561 alpha/beta hydrolase fold LQRI_0697 PF08386 TAP-like protein LQRI_0700 PF00082 Subtilase family LQRI_0700 PF05922 Peptidase inhibitor I9 LQRI_0704 PF13472 GDSL-like Lipase/Acylhydrolase family LQRI_0707 PF06445 GyrI-like small molecule binding domain LQRI_0707 PF12833 Helix-turn-helix domain LQRI_0710 PF00005 ABC transporter LQRI_0710 PF00664 ABC transporter transmembrane region LQRI_0711 PF00664 ABC transporter transmembrane region LQRI_0711 PF00005 ABC transporter LQRI_0712 PF07687 Peptidase dimerisation domain LQRI_0712 PF01546 Peptidase family M20/M25/M40 LQRI_0713 PF03186 CobD/Cbib protein LQRI_0714 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LQRI_0715 PF02654 Cobalamin-5-phosphate synthase LQRI_0716 PF00300 Histidine phosphatase superfamily (branch 1) LQRI_0718 PF12706 Beta-lactamase superfamily domain LQRI_0719 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_0719 PF02743 Cache domain LQRI_0719 PF00672 HAMP domain LQRI_0720 PF00682 HMGL-like LQRI_0721 PF00330 Aconitase family (aconitate hydratase) LQRI_0722 PF07729 FCD domain LQRI_0722 PF00392 Bacterial regulatory proteins, gntR family LQRI_0723 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LQRI_0723 PF17126 RsmF rRNA methyltransferase first C-terminal domain LQRI_0723 PF01189 16S rRNA methyltransferase RsmB/F LQRI_0724 PF00849 RNA pseudouridylate synthase LQRI_0724 PF01479 S4 domain LQRI_0727 PF12833 Helix-turn-helix domain LQRI_0727 PF00072 Response regulator receiver domain LQRI_0729 PF00483 Nucleotidyl transferase LQRI_0730 PF00483 Nucleotidyl transferase LQRI_0731 PF00781 Diacylglycerol kinase catalytic domain LQRI_0733 PF00005 ABC transporter LQRI_0735 PF00005 ABC transporter LQRI_0735 PF02687 FtsX-like permease family LQRI_0735 PF12704 MacB-like periplasmic core domain LQRI_0738 PF04239 Protein of unknown function (DUF421) LQRI_0739 PF00269 Small, acid-soluble spore proteins, alpha/beta type LQRI_0742 PF07943 Penicillin-binding protein 5, C-terminal domain LQRI_0742 PF00768 D-alanyl-D-alanine carboxypeptidase LQRI_0744 PF02254 TrkA-N domain LQRI_0744 PF02080 TrkA-C domain LQRI_0745 PF02386 Cation transport protein LQRI_0746 PF01702 Queuine tRNA-ribosyltransferase LQRI_0751 PF14490 Helix-hairpin-helix containing domain LQRI_0751 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LQRI_0751 PF13538 UvrD-like helicase C-terminal domain LQRI_0760 PF01594 AI-2E family transporter LQRI_0761 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LQRI_0761 PF01411 tRNA synthetases class II (A) LQRI_0761 PF02272 DHHA1 domain LQRI_0779 PF00872 Transposase, Mutator family LQRI_0796 PF00872 Transposase, Mutator family LQRI_0801 PF00872 Transposase, Mutator family LQRI_0802 PF01266 FAD dependent oxidoreductase LQRI_0802 PF00355 Rieske [2Fe-2S] domain LQRI_0805 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_0806 PF00005 ABC transporter LQRI_0810 PF01636 Phosphotransferase enzyme family LQRI_0815 PF13180 PDZ domain LQRI_0820 PF00196 Bacterial regulatory proteins, luxR family LQRI_0820 PF17874 MalT-like TPR region LQRI_0823 PF04542 Sigma-70 region 2 LQRI_0823 PF08281 Sigma-70, region 4 LQRI_0824 PF11738 Protein of unknown function (DUF3298) LQRI_0824 PF13739 Deacetylase PdaC LQRI_0828 PF01797 Transposase IS200 like LQRI_0832 PF00232 Glycosyl hydrolase family 1 LQRI_0834 PF03591 AzlC protein LQRI_0835 PF03030 Inorganic H+ pyrophosphatase LQRI_0837 PF01594 AI-2E family transporter LQRI_0839 PF01797 Transposase IS200 like LQRI_0840 PF06271 RDD family LQRI_0841 PF01343 Peptidase family S49 LQRI_0842 PF02659 Putative manganese efflux pump LQRI_0845 PF00005 ABC transporter LQRI_0845 PF13732 Domain of unknown function (DUF4162) LQRI_0848 PF00291 Pyridoxal-phosphate dependent enzyme LQRI_0849 PF00290 Tryptophan synthase alpha chain LQRI_0850 PF16916 Dimerisation domain of Zinc Transporter LQRI_0850 PF01545 Cation efflux family LQRI_0851 PF00672 HAMP domain LQRI_0851 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0851 PF00512 His Kinase A (phospho-acceptor) domain LQRI_0851 PF00989 PAS fold LQRI_0852 PF00072 Response regulator receiver domain LQRI_0852 PF00486 Transcriptional regulatory protein, C terminal LQRI_0855 PF08757 CotH kinase protein LQRI_0856 PF02421 Ferrous iron transport protein B LQRI_0856 PF07670 Nucleoside recognition LQRI_0856 PF07664 Ferrous iron transport protein B C terminus LQRI_0856 PF17910 FeoB cytosolic helical domain LQRI_0858 PF02742 Iron dependent repressor, metal binding and dimerisation domain LQRI_0858 PF01325 Iron dependent repressor, N-terminal DNA binding domain LQRI_0860 PF07745 Glycosyl hydrolase family 53 LQRI_0862 PF00404 Dockerin type I domain LQRI_0863 PF01501 Glycosyl transferase family 8 LQRI_0863 PF08437 Glycosyl transferase family 8 C-terminal LQRI_0864 PF13091 PLD-like domain LQRI_0865 PF00005 ABC transporter LQRI_0866 PF00072 Response regulator receiver domain LQRI_0866 PF00486 Transcriptional regulatory protein, C terminal LQRI_0867 PF13426 PAS domain LQRI_0867 PF00512 His Kinase A (phospho-acceptor) domain LQRI_0867 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0867 PF00672 HAMP domain LQRI_0868 PF00682 HMGL-like LQRI_0868 PF08502 LeuA allosteric (dimerisation) domain LQRI_0869 PF12146 Serine aminopeptidase, S33 LQRI_0870 PF13735 tRNA nucleotidyltransferase domain 2 putative LQRI_0870 PF12627 Probable RNA and SrmB- binding site of polymerase A LQRI_0870 PF01743 Poly A polymerase head domain LQRI_0871 PF01371 Trp repressor protein LQRI_0874 PF07517 SecA DEAD-like domain LQRI_0874 PF01043 SecA preprotein cross-linking domain LQRI_0874 PF07516 SecA Wing and Scaffold domain LQRI_0874 PF02810 SEC-C motif LQRI_0875 PF02875 Mur ligase family, glutamate ligase domain LQRI_0875 PF08245 Mur ligase middle domain LQRI_0877 PF01734 Patatin-like phospholipase LQRI_0878 PF00291 Pyridoxal-phosphate dependent enzyme LQRI_0878 PF14821 Threonine synthase N terminus LQRI_0879 PF00072 Response regulator receiver domain LQRI_0880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LQRI_0881 PF01966 HD domain LQRI_0883 PF03447 Homoserine dehydrogenase, NAD binding domain LQRI_0883 PF00742 Homoserine dehydrogenase LQRI_0883 PF01842 ACT domain LQRI_0884 PF13840 ACT domain LQRI_0884 PF00696 Amino acid kinase family LQRI_0891 PF05593 RHS Repeat LQRI_0894 PF01230 HIT domain LQRI_0895 PF00395 S-layer homology domain LQRI_0895 PF00963 Cohesin domain LQRI_0896 PF01797 Transposase IS200 like LQRI_0898 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LQRI_0901 PF13614 AAA domain LQRI_0903 PF01370 NAD dependent epimerase/dehydratase family LQRI_0907 PF00534 Glycosyl transferases group 1 LQRI_0909 PF00535 Glycosyl transferase family 2 LQRI_0912 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LQRI_0912 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LQRI_0912 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LQRI_0914 PF00436 Single-strand binding protein family LQRI_0915 PF02397 Bacterial sugar transferase LQRI_0916 PF01165 Ribosomal protein S21 LQRI_0918 PF01368 DHH family LQRI_0918 PF02272 DHHA1 domain LQRI_0918 PF17768 RecJ OB domain LQRI_0918 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LQRI_0919 PF00156 Phosphoribosyl transferase domain LQRI_0920 PF02824 TGS domain LQRI_0920 PF13291 ACT domain LQRI_0920 PF04607 Region found in RelA / SpoT proteins LQRI_0921 PF02580 D-Tyr-tRNA(Tyr) deacylase LQRI_0922 PF00753 Metallo-beta-lactamase superfamily LQRI_0923 PF04055 Radical SAM superfamily LQRI_0925 PF00437 Type II/IV secretion system protein LQRI_0933 PF13393 Histidyl-tRNA synthetase LQRI_0933 PF03129 Anticodon binding domain LQRI_0934 PF01336 OB-fold nucleic acid binding domain LQRI_0934 PF00152 tRNA synthetases class II (D, K and N) LQRI_0934 PF02938 GAD domain LQRI_0935 PF10502 Signal peptidase, peptidase S26 LQRI_0940 PF03144 Elongation factor Tu domain 2 LQRI_0940 PF00679 Elongation factor G C-terminus LQRI_0940 PF06421 GTP-binding protein LepA C-terminus LQRI_0940 PF00009 Elongation factor Tu GTP binding domain LQRI_0941 PF06969 HemN C-terminal domain LQRI_0941 PF04055 Radical SAM superfamily LQRI_0942 PF01628 HrcA protein C terminal domain LQRI_0943 PF01025 GrpE LQRI_0944 PF00012 Hsp70 protein LQRI_0945 PF00226 DnaJ domain LQRI_0945 PF01556 DnaJ C terminal domain LQRI_0945 PF00684 DnaJ central domain LQRI_0947 PF04452 RNA methyltransferase LQRI_0948 PF00072 Response regulator receiver domain LQRI_0950 PF03755 YicC-like family, N-terminal region LQRI_0950 PF08340 Domain of unknown function (DUF1732) LQRI_0951 PF04025 Domain of unknown function (DUF370) LQRI_0952 PF00625 Guanylate kinase LQRI_0953 PF01192 RNA polymerase Rpb6 LQRI_0954 PF04127 DNA / pantothenate metabolism flavoprotein LQRI_0954 PF02441 Flavoprotein LQRI_0955 PF03129 Anticodon binding domain LQRI_0955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQRI_0956 PF00989 PAS fold LQRI_0956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0956 PF17203 Single cache domain 3 LQRI_0956 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LQRI_0959 PF04055 Radical SAM superfamily LQRI_0959 PF13186 Iron-sulfur cluster-binding domain LQRI_0960 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LQRI_0960 PF02896 PEP-utilising enzyme, TIM barrel domain LQRI_0960 PF00391 PEP-utilising enzyme, mobile domain LQRI_0961 PF00395 S-layer homology domain LQRI_0961 PF06452 Carbohydrate family 9 binding domain-like LQRI_0961 PF02018 Carbohydrate binding domain LQRI_0961 PF00331 Glycosyl hydrolase family 10 LQRI_0963 PF07883 Cupin domain LQRI_0964 PF02562 PhoH-like protein LQRI_0964 PF13638 PIN domain LQRI_0965 PF13439 Glycosyltransferase Family 4 LQRI_0965 PF00534 Glycosyl transferases group 1 LQRI_0966 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LQRI_0966 PF00753 Metallo-beta-lactamase superfamily LQRI_0966 PF17770 Ribonuclease J C-terminal domain LQRI_0967 PF05636 HIGH Nucleotidyl Transferase LQRI_0970 PF01386 Ribosomal L25p family LQRI_0970 PF14693 Ribosomal protein TL5, C-terminal domain LQRI_0971 PF02277 Phosphoribosyltransferase LQRI_0973 PF01812 5-formyltetrahydrofolate cyclo-ligase family LQRI_0976 PF00072 Response regulator receiver domain LQRI_0977 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase LQRI_0977 PF01676 Metalloenzyme superfamily LQRI_0981 PF00486 Transcriptional regulatory protein, C terminal LQRI_0981 PF00072 Response regulator receiver domain LQRI_0982 PF00512 His Kinase A (phospho-acceptor) domain LQRI_0982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_0982 PF00672 HAMP domain LQRI_0983 PF13180 PDZ domain LQRI_0984 PF01966 HD domain LQRI_0985 PF00534 Glycosyl transferases group 1 LQRI_0985 PF08323 Starch synthase catalytic domain LQRI_0986 PF00730 HhH-GPD superfamily base excision DNA repair protein LQRI_0986 PF00633 Helix-hairpin-helix motif LQRI_0987 PF00990 Diguanylate cyclase, GGDEF domain LQRI_0989 PF04226 Transglycosylase associated protein LQRI_0990 PF00830 Ribosomal L28 family LQRI_0991 PF00270 DEAD/DEAH box helicase LQRI_0991 PF17191 RecG wedge domain LQRI_0991 PF00271 Helicase conserved C-terminal domain LQRI_0993 PF01467 Cytidylyltransferase-like LQRI_0995 PF07670 Nucleoside recognition LQRI_0996 PF12791 Anti-sigma factor N-terminus LQRI_0996 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain LQRI_0997 PF04542 Sigma-70 region 2 LQRI_0998 PF04616 Glycosyl hydrolases family 43 LQRI_0998 PF03422 Carbohydrate binding module (family 6) LQRI_1001 PF05384 Sensor protein DegS LQRI_1001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1001 PF07730 Histidine kinase LQRI_1002 PF00072 Response regulator receiver domain LQRI_1002 PF00196 Bacterial regulatory proteins, luxR family LQRI_1003 PF02743 Cache domain LQRI_1003 PF00672 HAMP domain LQRI_1003 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_1004 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LQRI_1004 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LQRI_1004 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LQRI_1004 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LQRI_1005 PF02811 PHP domain LQRI_1005 PF01336 OB-fold nucleic acid binding domain LQRI_1005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LQRI_1005 PF14579 Helix-hairpin-helix motif LQRI_1005 PF07733 Bacterial DNA polymerase III alpha NTPase domain LQRI_1006 PF02081 Tryptophan RNA-binding attenuator protein LQRI_1008 PF00365 Phosphofructokinase LQRI_1010 PF01066 CDP-alcohol phosphatidyltransferase LQRI_1013 PF14310 Fibronectin type III-like domain LQRI_1013 PF01915 Glycosyl hydrolase family 3 C-terminal domain LQRI_1013 PF00933 Glycosyl hydrolase family 3 N terminal domain LQRI_1019 PF00860 Permease family LQRI_1020 PF00731 AIR carboxylase LQRI_1021 PF00156 Phosphoribosyl transferase domain LQRI_1022 PF02769 AIR synthase related protein, C-terminal domain LQRI_1022 PF00586 AIR synthase related protein, N-terminal domain LQRI_1023 PF00551 Formyl transferase LQRI_1024 PF01808 AICARFT/IMPCHase bienzyme LQRI_1024 PF02142 MGS-like domain LQRI_1025 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LQRI_1025 PF02843 Phosphoribosylglycinamide synthetase, C domain LQRI_1025 PF02844 Phosphoribosylglycinamide synthetase, N domain LQRI_1026 PF00535 Glycosyl transferase family 2 LQRI_1028 PF01467 Cytidylyltransferase-like LQRI_1029 PF01966 HD domain LQRI_1032 PF09334 tRNA synthetases class I (M) LQRI_1032 PF13603 Leucyl-tRNA synthetase, Domain 2 LQRI_1032 PF08264 Anticodon-binding domain of tRNA LQRI_1032 PF00133 tRNA synthetases class I (I, L, M and V) LQRI_1033 PF00704 Glycosyl hydrolases family 18 LQRI_1033 PF00041 Fibronectin type III domain LQRI_1034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_1034 PF12729 Four helix bundle sensory module for signal transduction LQRI_1034 PF00672 HAMP domain LQRI_1036 PF00501 AMP-binding enzyme LQRI_1037 PF07943 Penicillin-binding protein 5, C-terminal domain LQRI_1037 PF00768 D-alanyl-D-alanine carboxypeptidase LQRI_1038 PF10531 SLBB domain LQRI_1041 PF03129 Anticodon binding domain LQRI_1041 PF02824 TGS domain LQRI_1041 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQRI_1041 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LQRI_1042 PF00303 Thymidylate synthase LQRI_1043 PF00186 Dihydrofolate reductase LQRI_1044 PF05198 Translation initiation factor IF-3, N-terminal domain LQRI_1044 PF00707 Translation initiation factor IF-3, C-terminal domain LQRI_1045 PF01632 Ribosomal protein L35 LQRI_1046 PF00453 Ribosomal protein L20 LQRI_1047 PF00588 SpoU rRNA Methylase family LQRI_1047 PF08032 RNA 2'-O ribose methyltransferase substrate binding LQRI_1048 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LQRI_1048 PF06165 Glycosyltransferase family 36 LQRI_1048 PF10091 Putative glucoamylase LQRI_1051 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LQRI_1052 PF07724 AAA domain (Cdc48 subfamily) LQRI_1052 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_1052 PF10431 C-terminal, D2-small domain, of ClpB protein LQRI_1052 PF17871 AAA lid domain LQRI_1052 PF02861 Clp amino terminal domain, pathogenicity island component LQRI_1053 PF02617 ATP-dependent Clp protease adaptor protein ClpS LQRI_1054 PF01925 Sulfite exporter TauE/SafE LQRI_1055 PF01925 Sulfite exporter TauE/SafE LQRI_1058 PF00291 Pyridoxal-phosphate dependent enzyme LQRI_1064 PF06798 PrkA serine protein kinase C-terminal domain LQRI_1064 PF08298 PrkA AAA domain LQRI_1065 PF04285 Protein of unknown function (DUF444) LQRI_1066 PF04293 SpoVR like protein LQRI_1068 PF01048 Phosphorylase superfamily LQRI_1069 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LQRI_1069 PF05221 S-adenosyl-L-homocysteine hydrolase LQRI_1070 PF01979 Amidohydrolase family LQRI_1078 PF00872 Transposase, Mutator family LQRI_1080 PF13419 Haloacid dehalogenase-like hydrolase LQRI_1082 PF00005 ABC transporter LQRI_1085 PF07859 alpha/beta hydrolase fold LQRI_1088 PF07726 ATPase family associated with various cellular activities (AAA) LQRI_1088 PF17863 AAA lid domain LQRI_1090 PF11992 Domain of unknown function (DUF3488) LQRI_1090 PF13559 Domain of unknown function (DUF4129) LQRI_1090 PF01841 Transglutaminase-like superfamily LQRI_1092 PF08141 Small acid-soluble spore protein H family LQRI_1094 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LQRI_1094 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LQRI_1094 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LQRI_1095 PF13690 Chemotaxis phosphatase CheX LQRI_1102 PF05173 Dihydrodipicolinate reductase, C-terminus LQRI_1102 PF01113 Dihydrodipicolinate reductase, N-terminus LQRI_1105 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LQRI_1105 PF01871 AMMECR1 LQRI_1107 PF02457 DisA bacterial checkpoint controller nucleotide-binding LQRI_1110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LQRI_1110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LQRI_1110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LQRI_1110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LQRI_1111 PF01380 SIS domain LQRI_1112 PF01022 Bacterial regulatory protein, arsR family LQRI_1113 PF01758 Sodium Bile acid symporter family LQRI_1114 PF01451 Low molecular weight phosphotyrosine protein phosphatase LQRI_1119 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LQRI_1119 PF00437 Type II/IV secretion system protein LQRI_1120 PF00437 Type II/IV secretion system protein LQRI_1121 PF00482 Type II secretion system (T2SS), protein F LQRI_1122 PF07963 Prokaryotic N-terminal methylation motif LQRI_1122 PF00114 Pilin (bacterial filament) LQRI_1129 PF00574 Clp protease LQRI_1131 PF17854 FtsK alpha domain LQRI_1131 PF09397 Ftsk gamma domain LQRI_1131 PF01580 FtsK/SpoIIIE family LQRI_1132 PF11842 Domain of unknown function (DUF3362) LQRI_1132 PF04055 Radical SAM superfamily LQRI_1132 PF08497 Radical SAM N-terminal LQRI_1133 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LQRI_1133 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LQRI_1135 PF12072 Domain of unknown function (DUF3552) LQRI_1135 PF00013 KH domain LQRI_1135 PF01966 HD domain LQRI_1136 PF13277 YmdB-like protein LQRI_1137 PF04232 Stage V sporulation protein S (SpoVS) LQRI_1140 PF16363 GDP-mannose 4,6 dehydratase LQRI_1141 PF00534 Glycosyl transferases group 1 LQRI_1141 PF13439 Glycosyltransferase Family 4 LQRI_1143 PF01636 Phosphotransferase enzyme family LQRI_1147 PF00483 Nucleotidyl transferase LQRI_1151 PF05949 Bacterial protein of unknown function (DUF881) LQRI_1152 PF01522 Polysaccharide deacetylase LQRI_1153 PF07873 YabP family LQRI_1155 PF02562 PhoH-like protein LQRI_1156 PF07697 7TM-HD extracellular LQRI_1156 PF01966 HD domain LQRI_1156 PF07698 7TM receptor with intracellular HD hydrolase LQRI_1157 PF02130 Uncharacterized protein family UPF0054 LQRI_1158 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQRI_1159 PF07650 KH domain LQRI_1159 PF01926 50S ribosome-binding GTPase LQRI_1161 PF02565 Recombination protein O C terminal LQRI_1161 PF11967 Recombination protein O N terminal LQRI_1163 PF00266 Aminotransferase class-V LQRI_1164 PF02568 Thiamine biosynthesis protein (ThiI) LQRI_1164 PF02926 THUMP domain LQRI_1165 PF04294 VanW like protein LQRI_1169 PF00464 Serine hydroxymethyltransferase LQRI_1170 PF04024 PspC domain LQRI_1171 PF01841 Transglutaminase-like superfamily LQRI_1171 PF13559 Domain of unknown function (DUF4129) LQRI_1171 PF11992 Domain of unknown function (DUF3488) LQRI_1173 PF17863 AAA lid domain LQRI_1173 PF07726 ATPase family associated with various cellular activities (AAA) LQRI_1174 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LQRI_1174 PF00056 lactate/malate dehydrogenase, NAD binding domain LQRI_1175 PF02464 Competence-damaged protein LQRI_1175 PF18146 Damage-inducible protein CinA KH domain LQRI_1175 PF00994 Probable molybdopterin binding domain LQRI_1176 PF03023 Lipid II flippase MurJ LQRI_1177 PF00154 recA bacterial DNA recombination protein LQRI_1178 PF02631 RecX family LQRI_1179 PF01694 Rhomboid family LQRI_1186 PF08245 Mur ligase middle domain LQRI_1187 PF06144 DNA polymerase III, delta subunit LQRI_1188 PF01649 Ribosomal protein S20 LQRI_1189 PF03418 Germination protease LQRI_1190 PF01520 N-acetylmuramoyl-L-alanine amidase LQRI_1190 PF11741 AMIN domain LQRI_1192 PF00533 BRCA1 C Terminus (BRCT) domain LQRI_1192 PF01653 NAD-dependent DNA ligase adenylation domain LQRI_1192 PF03120 NAD-dependent DNA ligase OB-fold domain LQRI_1192 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LQRI_1192 PF12826 Helix-hairpin-helix motif LQRI_1195 PF02686 Glu-tRNAGln amidotransferase C subunit LQRI_1196 PF01425 Amidase LQRI_1197 PF02934 GatB/GatE catalytic domain LQRI_1197 PF02637 GatB domain LQRI_1199 PF01515 Phosphate acetyl/butaryl transferase LQRI_1200 PF00871 Acetokinase family LQRI_1202 PF01783 Ribosomal L32p protein family LQRI_1204 PF01926 50S ribosome-binding GTPase LQRI_1204 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LQRI_1205 PF02660 Glycerol-3-phosphate acyltransferase LQRI_1206 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LQRI_1206 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LQRI_1207 PF09547 Stage IV sporulation protein A (spore_IV_A) LQRI_1208 PF01547 Bacterial extracellular solute-binding protein LQRI_1209 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_1210 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_1211 PF04122 Putative cell wall binding repeat 2 LQRI_1211 PF01520 N-acetylmuramoyl-L-alanine amidase LQRI_1214 PF01713 Smr domain LQRI_1214 PF00488 MutS domain V LQRI_1215 PF01594 AI-2E family transporter LQRI_1216 PF04542 Sigma-70 region 2 LQRI_1216 PF04545 Sigma-70, region 4 LQRI_1217 PF03717 Penicillin-binding Protein dimerisation domain LQRI_1217 PF00905 Penicillin binding protein transpeptidase domain LQRI_1218 PF01136 Peptidase family U32 LQRI_1218 PF16325 Peptidase family U32 C-terminal domain LQRI_1219 PF01596 O-methyltransferase LQRI_1220 PF02618 YceG-like family LQRI_1221 PF00679 Elongation factor G C-terminus LQRI_1221 PF14492 Elongation Factor G, domain II LQRI_1221 PF00009 Elongation factor Tu GTP binding domain LQRI_1221 PF03144 Elongation factor Tu domain 2 LQRI_1222 PF00318 Ribosomal protein S2 LQRI_1223 PF00889 Elongation factor TS LQRI_1224 PF00696 Amino acid kinase family LQRI_1225 PF01765 Ribosome recycling factor LQRI_1227 PF01255 Putative undecaprenyl diphosphate synthase LQRI_1229 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LQRI_1229 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LQRI_1229 PF13288 DXP reductoisomerase C-terminal domain LQRI_1230 PF13180 PDZ domain LQRI_1230 PF02163 Peptidase family M50 LQRI_1231 PF04551 GcpE protein LQRI_1232 PF07733 Bacterial DNA polymerase III alpha NTPase domain LQRI_1232 PF00929 Exonuclease LQRI_1232 PF02811 PHP domain LQRI_1232 PF14579 Helix-hairpin-helix motif LQRI_1232 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LQRI_1232 PF01336 OB-fold nucleic acid binding domain LQRI_1232 PF11490 DNA polymerase III polC-type N-terminus II LQRI_1234 PF02576 RimP N-terminal domain LQRI_1234 PF17384 RimP C-terminal SH3 domain LQRI_1235 PF00575 S1 RNA binding domain LQRI_1235 PF08529 NusA N-terminal domain LQRI_1235 PF13184 NusA-like KH domain LQRI_1236 PF04296 Protein of unknown function (DUF448) LQRI_1237 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LQRI_1238 PF11987 Translation-initiation factor 2 LQRI_1238 PF00009 Elongation factor Tu GTP binding domain LQRI_1238 PF04760 Translation initiation factor IF-2, N-terminal region LQRI_1239 PF02033 Ribosome-binding factor A LQRI_1240 PF01368 DHH family LQRI_1240 PF02272 DHHA1 domain LQRI_1241 PF16198 tRNA pseudouridylate synthase B C-terminal domain LQRI_1241 PF01509 TruB family pseudouridylate synthase (N terminal domain) LQRI_1242 PF06574 FAD synthetase LQRI_1242 PF01687 Riboflavin kinase LQRI_1244 PF05193 Peptidase M16 inactive domain LQRI_1245 PF05193 Peptidase M16 inactive domain LQRI_1245 PF00675 Insulinase (Peptidase family M16) LQRI_1246 PF01790 Prolipoprotein diacylglyceryl transferase LQRI_1248 PF01098 Cell cycle protein LQRI_1249 PF02381 MraZ protein, putative antitoxin-like LQRI_1250 PF01795 MraW methylase family LQRI_1252 PF03717 Penicillin-binding Protein dimerisation domain LQRI_1252 PF00905 Penicillin binding protein transpeptidase domain LQRI_1252 PF03793 PASTA domain LQRI_1253 PF01225 Mur ligase family, catalytic domain LQRI_1253 PF02875 Mur ligase family, glutamate ligase domain LQRI_1253 PF08245 Mur ligase middle domain LQRI_1254 PF01225 Mur ligase family, catalytic domain LQRI_1254 PF02875 Mur ligase family, glutamate ligase domain LQRI_1254 PF08245 Mur ligase middle domain LQRI_1255 PF00953 Glycosyl transferase family 4 LQRI_1256 PF01098 Cell cycle protein LQRI_1257 PF03033 Glycosyltransferase family 28 N-terminal domain LQRI_1257 PF04101 Glycosyltransferase family 28 C-terminal domain LQRI_1258 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQRI_1261 PF00872 Transposase, Mutator family LQRI_1263 PF00580 UvrD/REP helicase N-terminal domain LQRI_1263 PF13361 UvrD-like helicase C-terminal domain LQRI_1265 PF12557 Cob(I)alamin adenosyltransferase N terminal LQRI_1265 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LQRI_1266 PF00696 Amino acid kinase family LQRI_1266 PF13840 ACT domain LQRI_1267 PF05173 Dihydrodipicolinate reductase, C-terminus LQRI_1267 PF01113 Dihydrodipicolinate reductase, N-terminus LQRI_1268 PF00701 Dihydrodipicolinate synthetase family LQRI_1269 PF01118 Semialdehyde dehydrogenase, NAD binding domain LQRI_1269 PF02774 Semialdehyde dehydrogenase, dimerisation domain LQRI_1270 PF08486 Stage II sporulation protein LQRI_1270 PF04122 Putative cell wall binding repeat 2 LQRI_1271 PF02547 Queuosine biosynthesis protein LQRI_1272 PF01702 Queuine tRNA-ribosyltransferase LQRI_1273 PF02699 Preprotein translocase subunit LQRI_1276 PF00156 Phosphoribosyl transferase domain LQRI_1278 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LQRI_1278 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LQRI_1279 PF01979 Amidohydrolase family LQRI_1280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LQRI_1281 PF00117 Glutamine amidotransferase class-I LQRI_1281 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LQRI_1282 PF02142 MGS-like domain LQRI_1282 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LQRI_1282 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQRI_1283 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LQRI_1284 PF01180 Dihydroorotate dehydrogenase LQRI_1285 PF00300 Histidine phosphatase superfamily (branch 1) LQRI_1289 PF04055 Radical SAM superfamily LQRI_1289 PF18693 TRAM domain LQRI_1289 PF00919 Uncharacterized protein family UPF0004 LQRI_1290 PF01066 CDP-alcohol phosphatidyltransferase LQRI_1293 PF03061 Thioesterase superfamily LQRI_1294 PF02504 Fatty acid synthesis protein LQRI_1295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LQRI_1295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LQRI_1296 PF00698 Acyl transferase domain LQRI_1298 PF00550 Phosphopantetheine attachment site LQRI_1299 PF00109 Beta-ketoacyl synthase, N-terminal domain LQRI_1299 PF02801 Beta-ketoacyl synthase, C-terminal domain LQRI_1300 PF14622 Ribonuclease-III-like LQRI_1300 PF00035 Double-stranded RNA binding motif LQRI_1302 PF04232 Stage V sporulation protein S (SpoVS) LQRI_1303 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LQRI_1304 PF06470 SMC proteins Flexible Hinge Domain LQRI_1304 PF02463 RecF/RecN/SMC N terminal domain LQRI_1305 PF02881 SRP54-type protein, helical bundle domain LQRI_1305 PF00448 SRP54-type protein, GTPase domain LQRI_1309 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain LQRI_1316 PF00749 tRNA synthetases class I (E and Q), catalytic domain LQRI_1316 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LQRI_1320 PF00331 Glycosyl hydrolase family 10 LQRI_1320 PF00756 Putative esterase LQRI_1320 PF00404 Dockerin type I domain LQRI_1320 PF02018 Carbohydrate binding domain LQRI_1321 PF02578 Multi-copper polyphenol oxidoreductase laccase LQRI_1322 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LQRI_1323 PF01252 Signal peptidase (SPase) II LQRI_1324 PF01479 S4 domain LQRI_1324 PF00849 RNA pseudouridylate synthase LQRI_1326 PF01966 HD domain LQRI_1326 PF00013 KH domain LQRI_1326 PF12072 Domain of unknown function (DUF3552) LQRI_1327 PF07549 SecD/SecF GG Motif LQRI_1327 PF02355 Protein export membrane protein LQRI_1328 PF07549 SecD/SecF GG Motif LQRI_1328 PF02355 Protein export membrane protein LQRI_1329 PF02548 Ketopantoate hydroxymethyltransferase LQRI_1330 PF02569 Pantoate-beta-alanine ligase LQRI_1331 PF02261 Aspartate decarboxylase LQRI_1333 PF11871 Domain of unknown function (DUF3391) LQRI_1333 PF01966 HD domain LQRI_1334 PF13286 Phosphohydrolase-associated domain LQRI_1334 PF01966 HD domain LQRI_1336 PF10410 DnaB-helicase binding domain of primase LQRI_1336 PF08275 DNA primase catalytic core, N-terminal domain LQRI_1336 PF01807 CHC2 zinc finger LQRI_1337 PF03979 Sigma-70 factor, region 1.1 LQRI_1337 PF00140 Sigma-70 factor, region 1.2 LQRI_1337 PF04542 Sigma-70 region 2 LQRI_1337 PF04539 Sigma-70 region 3 LQRI_1337 PF04545 Sigma-70, region 4 LQRI_1340 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LQRI_1341 PF01784 NIF3 (NGG1p interacting factor 3) LQRI_1342 PF00072 Response regulator receiver domain LQRI_1343 PF04542 Sigma-70 region 2 LQRI_1343 PF08281 Sigma-70, region 4 LQRI_1347 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LQRI_1347 PF01367 5'-3' exonuclease, C-terminal SAM fold LQRI_1347 PF00476 DNA polymerase family A LQRI_1348 PF01121 Dephospho-CoA kinase LQRI_1351 PF00892 EamA-like transporter family LQRI_1352 PF00990 Diguanylate cyclase, GGDEF domain LQRI_1354 PF18152 DAHP synthase ferredoxin-like domain LQRI_1354 PF00793 DAHP synthetase I family LQRI_1355 PF01584 CheW-like domain LQRI_1356 PF01926 50S ribosome-binding GTPase LQRI_1356 PF06071 Protein of unknown function (DUF933) LQRI_1358 PF04715 Anthranilate synthase component I, N terminal region LQRI_1358 PF00425 chorismate binding enzyme LQRI_1359 PF00117 Glutamine amidotransferase class-I LQRI_1359 PF00591 Glycosyl transferase family, a/b domain LQRI_1359 PF02885 Glycosyl transferase family, helical bundle domain LQRI_1360 PF02885 Glycosyl transferase family, helical bundle domain LQRI_1360 PF00591 Glycosyl transferase family, a/b domain LQRI_1361 PF00218 Indole-3-glycerol phosphate synthase LQRI_1362 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LQRI_1371 PF00120 Glutamine synthetase, catalytic domain LQRI_1371 PF18318 Glutamine synthetase C-terminal domain LQRI_1371 PF12437 Glutamine synthetase type III N terminal LQRI_1373 PF03816 Cell envelope-related transcriptional attenuator domain LQRI_1374 PF02915 Rubrerythrin LQRI_1376 PF12127 SigmaW regulon antibacterial LQRI_1377 PF01957 NfeD-like C-terminal, partner-binding LQRI_1377 PF01972 Serine dehydrogenase proteinase LQRI_1378 PF01063 Amino-transferase class IV LQRI_1380 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LQRI_1380 PF01488 Shikimate / quinate 5-dehydrogenase LQRI_1380 PF08501 Shikimate dehydrogenase substrate binding domain LQRI_1381 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LQRI_1381 PF00437 Type II/IV secretion system protein LQRI_1382 PF06750 Bacterial Peptidase A24 N-terminal domain LQRI_1382 PF01478 Type IV leader peptidase family LQRI_1384 PF01261 Xylose isomerase-like TIM barrel LQRI_1385 PF01220 Dehydroquinase class II LQRI_1386 PF01321 Creatinase/Prolidase N-terminal domain LQRI_1386 PF00557 Metallopeptidase family M24 LQRI_1387 PF01132 Elongation factor P (EF-P) OB domain LQRI_1387 PF08207 Elongation factor P (EF-P) KOW-like domain LQRI_1387 PF09285 Elongation factor P, C-terminal LQRI_1389 PF01797 Transposase IS200 like LQRI_1392 PF06686 Stage III sporulation protein AC/AD protein family LQRI_1393 PF06686 Stage III sporulation protein AC/AD protein family LQRI_1394 PF09546 Stage III sporulation protein AE (spore_III_AE) LQRI_1398 PF03780 Asp23 family, cell envelope-related function LQRI_1401 PF01029 NusB family LQRI_1402 PF02601 Exonuclease VII, large subunit LQRI_1402 PF13742 OB-fold nucleic acid binding domain LQRI_1403 PF02609 Exonuclease VII small subunit LQRI_1404 PF00348 Polyprenyl synthetase LQRI_1405 PF02681 Divergent PAP2 family LQRI_1407 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LQRI_1407 PF02779 Transketolase, pyrimidine binding domain LQRI_1407 PF02780 Transketolase, C-terminal domain LQRI_1408 PF01728 FtsJ-like methyltransferase LQRI_1408 PF01479 S4 domain LQRI_1410 PF02927 Cellulase N-terminal ig-like domain LQRI_1410 PF00759 Glycosyl hydrolase family 9 LQRI_1410 PF00404 Dockerin type I domain LQRI_1412 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_1412 PF12891 Glycoside hydrolase family 44 LQRI_1412 PF00942 Cellulose binding domain LQRI_1415 PF00005 ABC transporter LQRI_1415 PF13732 Domain of unknown function (DUF4162) LQRI_1417 PF00990 Diguanylate cyclase, GGDEF domain LQRI_1418 PF01513 ATP-NAD kinase LQRI_1419 PF01316 Arginine repressor, DNA binding domain LQRI_1419 PF02863 Arginine repressor, C-terminal domain LQRI_1420 PF02463 RecF/RecN/SMC N terminal domain LQRI_1421 PF17820 PDZ domain LQRI_1421 PF05580 SpoIVB peptidase S55 LQRI_1422 PF00072 Response regulator receiver domain LQRI_1422 PF08769 Sporulation initiation factor Spo0A C terminal LQRI_1423 PF00072 Response regulator receiver domain LQRI_1424 PF07194 P2 response regulator binding domain LQRI_1424 PF02895 Signal transducing histidine kinase, homodimeric domain LQRI_1424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1424 PF01584 CheW-like domain LQRI_1424 PF01627 Hpt domain LQRI_1425 PF01584 CheW-like domain LQRI_1426 PF01739 CheR methyltransferase, SAM binding domain LQRI_1426 PF03705 CheR methyltransferase, all-alpha domain LQRI_1427 PF01339 CheB methylesterase LQRI_1427 PF00072 Response regulator receiver domain LQRI_1428 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQRI_1428 PF00072 Response regulator receiver domain LQRI_1428 PF01627 Hpt domain LQRI_1428 PF00512 His Kinase A (phospho-acceptor) domain LQRI_1428 PF00672 HAMP domain LQRI_1428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1429 PF00486 Transcriptional regulatory protein, C terminal LQRI_1429 PF00072 Response regulator receiver domain LQRI_1431 PF00849 RNA pseudouridylate synthase LQRI_1434 PF00872 Transposase, Mutator family LQRI_1435 PF00512 His Kinase A (phospho-acceptor) domain LQRI_1435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1435 PF00989 PAS fold LQRI_1435 PF16736 Single Cache-like LQRI_1436 PF00486 Transcriptional regulatory protein, C terminal LQRI_1436 PF00072 Response regulator receiver domain LQRI_1437 PF00404 Dockerin type I domain LQRI_1437 PF13472 GDSL-like Lipase/Acylhydrolase family LQRI_1438 PF17996 Carbohydrate esterase 2 N-terminal LQRI_1438 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_1438 PF00657 GDSL-like Lipase/Acylhydrolase LQRI_1438 PF00404 Dockerin type I domain LQRI_1439 PF02903 Alpha amylase, N-terminal ig-like domain LQRI_1439 PF00128 Alpha amylase, catalytic domain LQRI_1440 PF06838 Methionine gamma-lyase LQRI_1442 PF01168 Alanine racemase, N-terminal domain LQRI_1443 PF04472 Cell division protein SepF LQRI_1445 PF17774 Putative RNA-binding domain in YlmH LQRI_1445 PF01479 S4 domain LQRI_1446 PF05103 DivIVA protein LQRI_1447 PF00133 tRNA synthetases class I (I, L, M and V) LQRI_1447 PF08264 Anticodon-binding domain of tRNA LQRI_1447 PF06827 Zinc finger found in FPG and IleRS LQRI_1448 PF01761 3-dehydroquinate synthase LQRI_1451 PF01938 TRAM domain LQRI_1451 PF00919 Uncharacterized protein family UPF0004 LQRI_1451 PF04055 Radical SAM superfamily LQRI_1453 PF02743 Cache domain LQRI_1453 PF00672 HAMP domain LQRI_1453 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_1455 PF13419 Haloacid dehalogenase-like hydrolase LQRI_1456 PF00188 Cysteine-rich secretory protein family LQRI_1458 PF01624 MutS domain I LQRI_1458 PF05188 MutS domain II LQRI_1458 PF05192 MutS domain III LQRI_1458 PF05190 MutS family domain IV LQRI_1458 PF00488 MutS domain V LQRI_1459 PF01119 DNA mismatch repair protein, C-terminal domain LQRI_1459 PF08676 MutL C terminal dimerisation domain LQRI_1461 PF17209 Hfq protein LQRI_1462 PF01726 LexA DNA binding domain LQRI_1462 PF00717 Peptidase S24-like LQRI_1464 PF04297 Putative helix-turn-helix protein, YlxM / p13 like LQRI_1465 PF02881 SRP54-type protein, helical bundle domain LQRI_1465 PF02978 Signal peptide binding domain LQRI_1465 PF00448 SRP54-type protein, GTPase domain LQRI_1466 PF00886 Ribosomal protein S16 LQRI_1468 PF05239 PRC-barrel domain LQRI_1468 PF01782 RimM N-terminal domain LQRI_1469 PF01746 tRNA (Guanine-1)-methyltransferase LQRI_1470 PF01245 Ribosomal protein L19 LQRI_1471 PF10502 Signal peptidase, peptidase S26 LQRI_1472 PF01926 50S ribosome-binding GTPase LQRI_1474 PF01351 Ribonuclease HII LQRI_1477 PF02021 Uncharacterised protein family UPF0102 LQRI_1478 PF04002 RadC-like JAB domain LQRI_1479 PF01244 Membrane dipeptidase (Peptidase family M19) LQRI_1480 PF00155 Aminotransferase class I and II LQRI_1485 PF00005 ABC transporter LQRI_1485 PF08402 TOBE domain LQRI_1486 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_1487 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_1488 PF13416 Bacterial extracellular solute-binding protein LQRI_1490 PF00942 Cellulose binding domain LQRI_1490 PF00404 Dockerin type I domain LQRI_1490 PF00759 Glycosyl hydrolase family 9 LQRI_1491 PF17820 PDZ domain LQRI_1491 PF03572 Peptidase family S41 LQRI_1491 PF01471 Putative peptidoglycan binding domain LQRI_1492 PF01554 MatE LQRI_1494 PF10397 Adenylosuccinate lyase C-terminus LQRI_1494 PF00206 Lyase LQRI_1495 PF00392 Bacterial regulatory proteins, gntR family LQRI_1495 PF07702 UTRA domain LQRI_1497 PF00403 Heavy-metal-associated domain LQRI_1499 PF01648 4'-phosphopantetheinyl transferase superfamily LQRI_1501 PF00963 Cohesin domain LQRI_1501 PF00395 S-layer homology domain LQRI_1502 PF00963 Cohesin domain LQRI_1502 PF00395 S-layer homology domain LQRI_1505 PF01264 Chorismate synthase LQRI_1506 PF01202 Shikimate kinase LQRI_1508 PF00404 Dockerin type I domain LQRI_1508 PF01270 Glycosyl hydrolases family 8 LQRI_1509 PF02899 Phage integrase, N-terminal SAM-like domain LQRI_1509 PF00589 Phage integrase family LQRI_1511 PF02127 Aminopeptidase I zinc metalloprotease (M18) LQRI_1512 PF01966 HD domain LQRI_1514 PF00579 tRNA synthetases class I (W and Y) LQRI_1516 PF01592 NifU-like N terminal domain LQRI_1517 PF00266 Aminotransferase class-V LQRI_1518 PF02082 Transcriptional regulator LQRI_1521 PF01739 CheR methyltransferase, SAM binding domain LQRI_1521 PF03705 CheR methyltransferase, all-alpha domain LQRI_1522 PF00334 Nucleoside diphosphate kinase LQRI_1523 PF02675 S-adenosylmethionine decarboxylase LQRI_1524 PF02401 LytB protein LQRI_1524 PF00575 S1 RNA binding domain LQRI_1525 PF01553 Acyltransferase LQRI_1526 PF02224 Cytidylate kinase LQRI_1531 PF00300 Histidine phosphatase superfamily (branch 1) LQRI_1532 PF01418 Helix-turn-helix domain, rpiR family LQRI_1532 PF01380 SIS domain LQRI_1537 PF02436 Conserved carboxylase domain LQRI_1537 PF00682 HMGL-like LQRI_1537 PF00364 Biotin-requiring enzyme LQRI_1538 PF00364 Biotin-requiring enzyme LQRI_1540 PF01039 Carboxyl transferase domain LQRI_1542 PF06962 Putative rRNA methylase LQRI_1543 PF00491 Arginase family LQRI_1544 PF17284 Spermidine synthase tetramerisation domain LQRI_1545 PF01479 S4 domain LQRI_1545 PF00849 RNA pseudouridylate synthase LQRI_1546 PF09579 Sporulation protein YtfJ (Spore_YtfJ) LQRI_1549 PF04079 Segregation and condensation complex subunit ScpB LQRI_1550 PF02616 Segregation and condensation protein ScpA LQRI_1551 PF00579 tRNA synthetases class I (W and Y) LQRI_1552 PF02163 Peptidase family M50 LQRI_1553 PF00571 CBS domain LQRI_1553 PF01368 DHH family LQRI_1553 PF02272 DHHA1 domain LQRI_1553 PF01743 Poly A polymerase head domain LQRI_1553 PF12627 Probable RNA and SrmB- binding site of polymerase A LQRI_1554 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LQRI_1554 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LQRI_1556 PF00571 CBS domain LQRI_1556 PF00478 IMP dehydrogenase / GMP reductase domain LQRI_1558 PF07943 Penicillin-binding protein 5, C-terminal domain LQRI_1558 PF00768 D-alanyl-D-alanine carboxypeptidase LQRI_1559 PF00591 Glycosyl transferase family, a/b domain LQRI_1559 PF02885 Glycosyl transferase family, helical bundle domain LQRI_1559 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LQRI_1560 PF01676 Metalloenzyme superfamily LQRI_1561 PF02899 Phage integrase, N-terminal SAM-like domain LQRI_1561 PF00589 Phage integrase family LQRI_1562 PF01944 Stage II sporulation protein M LQRI_1563 PF00293 NUDIX domain LQRI_1564 PF00075 RNase H LQRI_1565 PF03807 NADP oxidoreductase coenzyme F420-dependent LQRI_1565 PF14748 Pyrroline-5-carboxylate reductase dimerisation LQRI_1570 PF03323 Bacillus/Clostridium GerA spore germination protein LQRI_1571 PF01145 SPFH domain / Band 7 family LQRI_1572 PF01145 SPFH domain / Band 7 family LQRI_1573 PF06725 3D domain LQRI_1573 PF07501 G5 domain LQRI_1573 PF03990 G5-linked-Ubiquitin-like domain LQRI_1575 PF00722 Glycosyl hydrolases family 16 LQRI_1575 PF00404 Dockerin type I domain LQRI_1576 PF00404 Dockerin type I domain LQRI_1582 PF00266 Aminotransferase class-V LQRI_1583 PF04055 Radical SAM superfamily LQRI_1583 PF06968 Biotin and Thiamin Synthesis associated domain LQRI_1585 PF01361 Tautomerase enzyme LQRI_1590 PF00749 tRNA synthetases class I (E and Q), catalytic domain LQRI_1593 PF02310 B12 binding domain LQRI_1593 PF02607 B12 binding domain LQRI_1593 PF02965 Vitamin B12 dependent methionine synthase, activation domain LQRI_1593 PF00809 Pterin binding enzyme LQRI_1593 PF02574 Homocysteine S-methyltransferase LQRI_1599 PF00722 Glycosyl hydrolases family 16 LQRI_1599 PF00404 Dockerin type I domain LQRI_1600 PF00128 Alpha amylase, catalytic domain LQRI_1600 PF02806 Alpha amylase, C-terminal all-beta domain LQRI_1600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LQRI_1601 PF01580 FtsK/SpoIIIE family LQRI_1601 PF12538 DNA transporter LQRI_1605 PF00069 Protein kinase domain LQRI_1605 PF03793 PASTA domain LQRI_1611 PF00437 Type II/IV secretion system protein LQRI_1611 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LQRI_1615 PF00759 Glycosyl hydrolase family 9 LQRI_1615 PF00404 Dockerin type I domain LQRI_1615 PF00942 Cellulose binding domain LQRI_1616 PF00942 Cellulose binding domain LQRI_1616 PF12891 Glycoside hydrolase family 44 LQRI_1617 PF01258 Prokaryotic dksA/traR C4-type zinc finger LQRI_1618 PF01048 Phosphorylase superfamily LQRI_1619 PF01008 Initiation factor 2 subunit family LQRI_1620 PF02742 Iron dependent repressor, metal binding and dimerisation domain LQRI_1620 PF01325 Iron dependent repressor, N-terminal DNA binding domain LQRI_1622 PF17910 FeoB cytosolic helical domain LQRI_1622 PF02421 Ferrous iron transport protein B LQRI_1622 PF07670 Nucleoside recognition LQRI_1622 PF07664 Ferrous iron transport protein B C terminus LQRI_1622 PF04023 FeoA domain LQRI_1624 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_1624 PF16193 AAA C-terminal domain LQRI_1624 PF12002 MgsA AAA+ ATPase C terminal LQRI_1626 PF00501 AMP-binding enzyme LQRI_1626 PF14535 AMP-binding enzyme C-terminal domain LQRI_1628 PF00037 4Fe-4S binding domain LQRI_1628 PF12798 4Fe-4S binding domain LQRI_1629 PF00474 Sodium:solute symporter family LQRI_1630 PF10996 Beta-Casp domain LQRI_1630 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LQRI_1630 PF00753 Metallo-beta-lactamase superfamily LQRI_1631 PF00155 Aminotransferase class I and II LQRI_1632 PF05343 M42 glutamyl aminopeptidase LQRI_1633 PF05343 M42 glutamyl aminopeptidase LQRI_1634 PF05343 M42 glutamyl aminopeptidase LQRI_1636 PF00877 NlpC/P60 family LQRI_1639 PF01964 Radical SAM ThiC family LQRI_1640 PF02581 Thiamine monophosphate synthase LQRI_1641 PF00581 Rhodanese-like domain LQRI_1641 PF00899 ThiF family LQRI_1642 PF06968 Biotin and Thiamin Synthesis associated domain LQRI_1642 PF04055 Radical SAM superfamily LQRI_1643 PF05690 Thiazole biosynthesis protein ThiG LQRI_1644 PF05690 Thiazole biosynthesis protein ThiG LQRI_1644 PF02597 ThiS family LQRI_1645 PF01926 50S ribosome-binding GTPase LQRI_1650 PF13649 Methyltransferase domain LQRI_1659 PF07508 Recombinase LQRI_1659 PF00239 Resolvase, N terminal domain LQRI_1659 PF13408 Recombinase zinc beta ribbon domain LQRI_1661 PF00270 DEAD/DEAH box helicase LQRI_1661 PF08494 DEAD/H associated LQRI_1661 PF00271 Helicase conserved C-terminal domain LQRI_1665 PF02796 Helix-turn-helix domain of resolvase LQRI_1665 PF00239 Resolvase, N terminal domain LQRI_1673 PF00072 Response regulator receiver domain LQRI_1673 PF00158 Sigma-54 interaction domain LQRI_1674 PF08447 PAS fold LQRI_1674 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1674 PF08448 PAS fold LQRI_1675 PF05670 NFACT protein RNA binding domain LQRI_1676 PF00155 Aminotransferase class I and II LQRI_1677 PF00881 Nitroreductase family LQRI_1678 PF00942 Cellulose binding domain LQRI_1678 PF03442 Carbohydrate binding domain X2 LQRI_1678 PF00759 Glycosyl hydrolase family 9 LQRI_1680 PF00834 Ribulose-phosphate 3 epimerase family LQRI_1681 PF03193 RsgA GTPase LQRI_1681 PF16745 RsgA N-terminal domain LQRI_1682 PF03793 PASTA domain LQRI_1682 PF00069 Protein kinase domain LQRI_1684 PF04055 Radical SAM superfamily LQRI_1685 PF01189 16S rRNA methyltransferase RsmB/F LQRI_1685 PF01029 NusB family LQRI_1686 PF04298 Putative neutral zinc metallopeptidase LQRI_1688 PF02911 Formyl transferase, C-terminal domain LQRI_1688 PF00551 Formyl transferase LQRI_1689 PF01327 Polypeptide deformylase LQRI_1690 PF00271 Helicase conserved C-terminal domain LQRI_1690 PF18074 Primosomal protein N C-terminal domain LQRI_1690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LQRI_1690 PF04851 Type III restriction enzyme, res subunit LQRI_1690 PF17764 3′ DNA-binding domain (3′BD) LQRI_1692 PF00348 Polyprenyl synthetase LQRI_1695 PF02424 ApbE family LQRI_1696 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_1699 PF01522 Polysaccharide deacetylase LQRI_1700 PF00733 Asparagine synthase LQRI_1700 PF13537 Glutamine amidotransferase domain LQRI_1701 PF05698 Bacterial trigger factor protein (TF) C-terminus LQRI_1702 PF02769 AIR synthase related protein, C-terminal domain LQRI_1702 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LQRI_1702 PF00586 AIR synthase related protein, N-terminal domain LQRI_1703 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LQRI_1703 PF03466 LysR substrate binding domain LQRI_1705 PF00501 AMP-binding enzyme LQRI_1705 PF13193 AMP-binding enzyme C-terminal domain LQRI_1706 PF00183 Hsp90 protein LQRI_1707 PF00950 ABC 3 transport family LQRI_1708 PF00005 ABC transporter LQRI_1709 PF01297 Zinc-uptake complex component A periplasmic LQRI_1710 PF01475 Ferric uptake regulator family LQRI_1713 PF00404 Dockerin type I domain LQRI_1713 PF00759 Glycosyl hydrolase family 9 LQRI_1713 PF00942 Cellulose binding domain LQRI_1715 PF00557 Metallopeptidase family M24 LQRI_1715 PF01321 Creatinase/Prolidase N-terminal domain LQRI_1716 PF00005 ABC transporter LQRI_1716 PF12704 MacB-like periplasmic core domain LQRI_1717 PF00005 ABC transporter LQRI_1718 PF00512 His Kinase A (phospho-acceptor) domain LQRI_1718 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1718 PF00672 HAMP domain LQRI_1719 PF00072 Response regulator receiver domain LQRI_1719 PF00486 Transcriptional regulatory protein, C terminal LQRI_1720 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_1720 PF00404 Dockerin type I domain LQRI_1722 PF00664 ABC transporter transmembrane region LQRI_1722 PF00005 ABC transporter LQRI_1722 PF03412 Peptidase C39 family LQRI_1729 PF01797 Transposase IS200 like LQRI_1730 PF01797 Transposase IS200 like LQRI_1731 PF00512 His Kinase A (phospho-acceptor) domain LQRI_1731 PF16736 Single Cache-like LQRI_1731 PF00989 PAS fold LQRI_1731 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1732 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LQRI_1735 PF14579 Helix-hairpin-helix motif LQRI_1735 PF02811 PHP domain LQRI_1735 PF00929 Exonuclease LQRI_1735 PF07733 Bacterial DNA polymerase III alpha NTPase domain LQRI_1735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LQRI_1736 PF04055 Radical SAM superfamily LQRI_1737 PF02901 Pyruvate formate lyase-like LQRI_1737 PF01228 Glycine radical LQRI_1738 PF09587 Bacterial capsule synthesis protein PGA_cap LQRI_1745 PF04542 Sigma-70 region 2 LQRI_1745 PF04539 Sigma-70 region 3 LQRI_1745 PF04545 Sigma-70, region 4 LQRI_1747 PF03975 CheD chemotactic sensory transduction LQRI_1748 PF04509 CheC-like family LQRI_1749 PF01584 CheW-like domain LQRI_1750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1750 PF01627 Hpt domain LQRI_1750 PF07194 P2 response regulator binding domain LQRI_1750 PF01584 CheW-like domain LQRI_1750 PF02895 Signal transducing histidine kinase, homodimeric domain LQRI_1751 PF01339 CheB methylesterase LQRI_1751 PF00072 Response regulator receiver domain LQRI_1753 PF10609 NUBPL iron-transfer P-loop NTPase LQRI_1754 PF00448 SRP54-type protein, GTPase domain LQRI_1755 PF00771 FHIPEP family LQRI_1756 PF01312 FlhB HrpN YscU SpaS Family LQRI_1757 PF01311 Bacterial export proteins, family 1 LQRI_1758 PF01313 Bacterial export proteins, family 3 LQRI_1759 PF00813 FliP family LQRI_1761 PF00072 Response regulator receiver domain LQRI_1762 PF04509 CheC-like family LQRI_1762 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LQRI_1763 PF02154 Flagellar motor switch protein FliM LQRI_1763 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LQRI_1765 PF06289 Flagellar and Swarming motility proteins LQRI_1766 PF07559 Flagellar basal body protein FlaE LQRI_1766 PF00460 Flagella basal body rod protein LQRI_1766 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQRI_1768 PF03963 Flagellar hook capping protein - N-terminal region LQRI_1772 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQRI_1772 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQRI_1772 PF18269 T3SS EscN ATPase C-terminal domain LQRI_1773 PF02108 Flagellar assembly protein FliH LQRI_1774 PF01706 FliG C-terminal domain LQRI_1774 PF14841 FliG middle domain LQRI_1774 PF14842 FliG N-terminal domain LQRI_1776 PF02049 Flagellar hook-basal body complex protein FliE LQRI_1777 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQRI_1777 PF00460 Flagella basal body rod protein LQRI_1778 PF00460 Flagella basal body rod protein LQRI_1779 PF01134 Glucose inhibited division protein A LQRI_1780 PF01751 Toprim domain LQRI_1780 PF01396 Topoisomerase DNA binding C4 zinc finger LQRI_1780 PF01131 DNA topoisomerase LQRI_1781 PF02481 DNA recombination-mediator protein A LQRI_1781 PF17782 DprA winged helix domain LQRI_1782 PF03372 Endonuclease/Exonuclease/phosphatase family LQRI_1783 PF03733 Inner membrane component domain LQRI_1785 PF01078 Magnesium chelatase, subunit ChlI LQRI_1785 PF13335 Magnesium chelatase, subunit ChlI C-terminal LQRI_1788 PF00942 Cellulose binding domain LQRI_1788 PF00963 Cohesin domain LQRI_1788 PF00404 Dockerin type I domain LQRI_1790 PF03477 ATP cone domain LQRI_1791 PF05239 PRC-barrel domain LQRI_1792 PF04542 Sigma-70 region 2 LQRI_1792 PF04539 Sigma-70 region 3 LQRI_1792 PF04545 Sigma-70, region 4 LQRI_1793 PF04542 Sigma-70 region 2 LQRI_1793 PF04545 Sigma-70, region 4 LQRI_1795 PF12327 FtsZ family, C-terminal domain LQRI_1795 PF00091 Tubulin/FtsZ family, GTPase domain LQRI_1796 PF02491 SHS2 domain inserted in FTSA LQRI_1797 PF06947 Protein of unknown function (DUF1290) LQRI_1798 PF08478 POTRA domain, FtsQ-type LQRI_1798 PF03799 Cell division protein FtsQ LQRI_1799 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQRI_1800 PF08353 Domain of unknown function (DUF1727) LQRI_1800 PF08245 Mur ligase middle domain LQRI_1801 PF07685 CobB/CobQ-like glutamine amidotransferase domain LQRI_1802 PF00872 Transposase, Mutator family LQRI_1803 PF00404 Dockerin type I domain LQRI_1808 PF00942 Cellulose binding domain LQRI_1808 PF00759 Glycosyl hydrolase family 9 LQRI_1811 PF02906 Iron only hydrogenase large subunit, C-terminal domain LQRI_1811 PF02256 Iron hydrogenase small subunit LQRI_1811 PF00037 4Fe-4S binding domain LQRI_1811 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LQRI_1812 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LQRI_1812 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LQRI_1812 PF00037 4Fe-4S binding domain LQRI_1818 PF00465 Iron-containing alcohol dehydrogenase LQRI_1818 PF00171 Aldehyde dehydrogenase family LQRI_1819 PF02629 CoA binding domain LQRI_1819 PF06971 Putative DNA-binding protein N-terminus LQRI_1820 PF02441 Flavoprotein LQRI_1822 PF05193 Peptidase M16 inactive domain LQRI_1822 PF00675 Insulinase (Peptidase family M16) LQRI_1823 PF00575 S1 RNA binding domain LQRI_1823 PF03725 3' exoribonuclease family, domain 2 LQRI_1823 PF01138 3' exoribonuclease family, domain 1 LQRI_1823 PF00013 KH domain LQRI_1823 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LQRI_1824 PF00312 Ribosomal protein S15 LQRI_1826 PF12652 CotJB protein LQRI_1827 PF05067 Manganese containing catalase LQRI_1828 PF02018 Carbohydrate binding domain LQRI_1828 PF00404 Dockerin type I domain LQRI_1828 PF00759 Glycosyl hydrolase family 9 LQRI_1828 PF00759 Glycosyl hydrolase family 9 LQRI_1828 PF02018 Carbohydrate binding domain LQRI_1828 PF00404 Dockerin type I domain LQRI_1828 PF02927 Cellulase N-terminal ig-like domain LQRI_1828 PF02927 Cellulase N-terminal ig-like domain LQRI_1829 PF02927 Cellulase N-terminal ig-like domain LQRI_1829 PF00759 Glycosyl hydrolase family 9 LQRI_1829 PF00404 Dockerin type I domain LQRI_1829 PF02018 Carbohydrate binding domain LQRI_1831 PF05167 Uncharacterised ACR (DUF711) LQRI_1833 PF03707 Bacterial signalling protein N terminal repeat LQRI_1833 PF00990 Diguanylate cyclase, GGDEF domain LQRI_1833 PF00563 EAL domain LQRI_1836 PF00331 Glycosyl hydrolase family 10 LQRI_1836 PF00942 Cellulose binding domain LQRI_1836 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_1837 PF12791 Anti-sigma factor N-terminus LQRI_1837 PF00942 Cellulose binding domain LQRI_1838 PF04542 Sigma-70 region 2 LQRI_1843 PF01906 Putative heavy-metal-binding LQRI_1844 PF00005 ABC transporter LQRI_1844 PF00664 ABC transporter transmembrane region LQRI_1845 PF00005 ABC transporter LQRI_1845 PF00664 ABC transporter transmembrane region LQRI_1846 PF05025 RbsD / FucU transport protein family LQRI_1847 PF00465 Iron-containing alcohol dehydrogenase LQRI_1848 PF13407 Periplasmic binding protein domain LQRI_1849 PF02653 Branched-chain amino acid transport system / permease component LQRI_1850 PF00005 ABC transporter LQRI_1851 PF01325 Iron dependent repressor, N-terminal DNA binding domain LQRI_1851 PF00480 ROK family LQRI_1852 PF00294 pfkB family carbohydrate kinase LQRI_1853 PF08240 Alcohol dehydrogenase GroES-like domain LQRI_1853 PF00107 Zinc-binding dehydrogenase LQRI_1856 PF02687 FtsX-like permease family LQRI_1856 PF12704 MacB-like periplasmic core domain LQRI_1856 PF00005 ABC transporter LQRI_1866 PF00117 Glutamine amidotransferase class-I LQRI_1866 PF02540 NAD synthase LQRI_1866 PF00958 GMP synthase C terminal domain LQRI_1867 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LQRI_1867 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LQRI_1868 PF00175 Oxidoreductase NAD-binding domain LQRI_1868 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LQRI_1869 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_1869 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LQRI_1869 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LQRI_1870 PF00872 Transposase, Mutator family LQRI_1872 PF01969 Protein of unknown function DUF111 LQRI_1873 PF00731 AIR carboxylase LQRI_1874 PF03807 NADP oxidoreductase coenzyme F420-dependent LQRI_1874 PF14748 Pyrroline-5-carboxylate reductase dimerisation LQRI_1876 PF03462 PCRF domain LQRI_1876 PF00472 RF-1 domain LQRI_1877 PF01381 Helix-turn-helix LQRI_1878 PF00155 Aminotransferase class I and II LQRI_1879 PF01037 Lrp/AsnC ligand binding domain LQRI_1882 PF00085 Thioredoxin LQRI_1884 PF00872 Transposase, Mutator family LQRI_1888 PF11897 Protein of unknown function (DUF3417) LQRI_1888 PF00343 Carbohydrate phosphorylase LQRI_1889 PF00872 Transposase, Mutator family LQRI_1891 PF01869 BadF/BadG/BcrA/BcrD ATPase family LQRI_1895 PF10502 Signal peptidase, peptidase S26 LQRI_1896 PF01116 Fructose-bisphosphate aldolase class-II LQRI_1897 PF00365 Phosphofructokinase LQRI_1899 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LQRI_1899 PF00056 lactate/malate dehydrogenase, NAD binding domain LQRI_1900 PF00390 Malic enzyme, N-terminal domain LQRI_1900 PF03949 Malic enzyme, NAD binding domain LQRI_1901 PF01613 Flavin reductase like domain LQRI_1902 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LQRI_1902 PF02906 Iron only hydrogenase large subunit, C-terminal domain LQRI_1902 PF02256 Iron hydrogenase small subunit LQRI_1902 PF00037 4Fe-4S binding domain LQRI_1903 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LQRI_1903 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LQRI_1903 PF00037 4Fe-4S binding domain LQRI_1905 PF00512 His Kinase A (phospho-acceptor) domain LQRI_1905 PF09308 LuxQ, periplasmic LQRI_1905 PF00072 Response regulator receiver domain LQRI_1905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1909 PF04060 Putative Fe-S cluster LQRI_1910 PF13581 Histidine kinase-like ATPase domain LQRI_1912 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LQRI_1912 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LQRI_1912 PF02824 TGS domain LQRI_1912 PF03129 Anticodon binding domain LQRI_1914 PF08241 Methyltransferase domain LQRI_1917 PF00009 Elongation factor Tu GTP binding domain LQRI_1917 PF03144 Elongation factor Tu domain 2 LQRI_1917 PF16658 Class II release factor RF3, C-terminal domain LQRI_1918 PF00963 Cohesin domain LQRI_1918 PF00395 S-layer homology domain LQRI_1919 PF01797 Transposase IS200 like LQRI_1922 PF02540 NAD synthase LQRI_1922 PF00795 Carbon-nitrogen hydrolase LQRI_1923 PF08264 Anticodon-binding domain of tRNA LQRI_1923 PF00133 tRNA synthetases class I (I, L, M and V) LQRI_1923 PF10458 Valyl tRNA synthetase tRNA binding arm LQRI_1925 PF00933 Glycosyl hydrolase family 3 N terminal domain LQRI_1925 PF01915 Glycosyl hydrolase family 3 C-terminal domain LQRI_1928 PF00596 Class II Aldolase and Adducin N-terminal domain LQRI_1929 PF17964 Bacterial Ig domain LQRI_1929 PF03734 L,D-transpeptidase catalytic domain LQRI_1931 PF12791 Anti-sigma factor N-terminus LQRI_1931 PF07691 PA14 domain LQRI_1932 PF04542 Sigma-70 region 2 LQRI_1935 PF07724 AAA domain (Cdc48 subfamily) LQRI_1935 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_1935 PF17871 AAA lid domain LQRI_1935 PF02861 Clp amino terminal domain, pathogenicity island component LQRI_1935 PF10431 C-terminal, D2-small domain, of ClpB protein LQRI_1937 PF17755 UvrA DNA-binding domain LQRI_1937 PF17760 UvrA interaction domain LQRI_1938 PF03990 G5-linked-Ubiquitin-like domain LQRI_1938 PF07501 G5 domain LQRI_1938 PF06725 3D domain LQRI_1939 PF02151 UvrB/uvrC motif LQRI_1939 PF12344 Ultra-violet resistance protein B LQRI_1939 PF17757 UvrB interaction domain LQRI_1939 PF00271 Helicase conserved C-terminal domain LQRI_1939 PF04851 Type III restriction enzyme, res subunit LQRI_1942 PF03989 DNA gyrase C-terminal domain, beta-propeller LQRI_1942 PF00521 DNA gyrase/topoisomerase IV, subunit A LQRI_1943 PF00204 DNA gyrase B LQRI_1943 PF00986 DNA gyrase B subunit, carboxyl terminus LQRI_1943 PF01751 Toprim domain LQRI_1943 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1946 PF12821 Threonine/Serine exporter, ThrE LQRI_1947 PF06738 Putative threonine/serine exporter LQRI_1948 PF00188 Cysteine-rich secretory protein family LQRI_1949 PF01554 MatE LQRI_1950 PF00672 HAMP domain LQRI_1950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_1950 PF02203 Tar ligand binding domain homologue LQRI_1952 PF00266 Aminotransferase class-V LQRI_1961 PF03190 Protein of unknown function, DUF255 LQRI_1962 PF01842 ACT domain LQRI_1962 PF00742 Homoserine dehydrogenase LQRI_1962 PF03447 Homoserine dehydrogenase, NAD binding domain LQRI_1963 PF04851 Type III restriction enzyme, res subunit LQRI_1963 PF13307 Helicase C-terminal domain LQRI_1964 PF03705 CheR methyltransferase, all-alpha domain LQRI_1964 PF01739 CheR methyltransferase, SAM binding domain LQRI_1965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1965 PF00072 Response regulator receiver domain LQRI_1965 PF09308 LuxQ, periplasmic LQRI_1965 PF00512 His Kinase A (phospho-acceptor) domain LQRI_1966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_1966 PF00512 His Kinase A (phospho-acceptor) domain LQRI_1968 PF00180 Isocitrate/isopropylmalate dehydrogenase LQRI_1970 PF00248 Aldo/keto reductase family LQRI_1971 PF08323 Starch synthase catalytic domain LQRI_1971 PF00534 Glycosyl transferases group 1 LQRI_1974 PF00849 RNA pseudouridylate synthase LQRI_1974 PF01479 S4 domain LQRI_1975 PF10672 S-adenosylmethionine-dependent methyltransferase LQRI_1975 PF01170 Putative RNA methylase family UPF0020 LQRI_1975 PF02926 THUMP domain LQRI_1977 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LQRI_1977 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LQRI_1978 PF06165 Glycosyltransferase family 36 LQRI_1978 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LQRI_1979 PF00759 Glycosyl hydrolase family 9 LQRI_1979 PF00942 Cellulose binding domain LQRI_1980 PF01966 HD domain LQRI_1981 PF07943 Penicillin-binding protein 5, C-terminal domain LQRI_1981 PF00768 D-alanyl-D-alanine carboxypeptidase LQRI_1982 PF00759 Glycosyl hydrolase family 9 LQRI_1982 PF00942 Cellulose binding domain LQRI_1983 PF00041 Fibronectin type III domain LQRI_1983 PF00704 Glycosyl hydrolases family 18 LQRI_1984 PF00404 Dockerin type I domain LQRI_1984 PF01270 Glycosyl hydrolases family 8 LQRI_1986 PF12791 Anti-sigma factor N-terminus LQRI_1986 PF00942 Cellulose binding domain LQRI_1987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_1987 PF00672 HAMP domain LQRI_1987 PF17200 Single Cache domain 2 LQRI_1988 PF00266 Aminotransferase class-V LQRI_1991 PF00171 Aldehyde dehydrogenase family LQRI_1993 PF12791 Anti-sigma factor N-terminus LQRI_1995 PF00404 Dockerin type I domain LQRI_1996 PF00437 Type II/IV secretion system protein LQRI_1997 PF00356 Bacterial regulatory proteins, lacI family LQRI_2000 PF07726 ATPase family associated with various cellular activities (AAA) LQRI_2000 PF17863 AAA lid domain LQRI_2003 PF01139 tRNA-splicing ligase RtcB LQRI_2004 PF03415 Clostripain family LQRI_2006 PF05190 MutS family domain IV LQRI_2006 PF05188 MutS domain II LQRI_2006 PF01624 MutS domain I LQRI_2006 PF00488 MutS domain V LQRI_2006 PF05192 MutS domain III LQRI_2007 PF18370 Rhamnogalacturonan I lyases beta-sheet domain LQRI_2008 PF01022 Bacterial regulatory protein, arsR family LQRI_2009 PF00403 Heavy-metal-associated domain LQRI_2010 PF01471 Putative peptidoglycan binding domain LQRI_2010 PF07486 Cell Wall Hydrolase LQRI_2014 PF01270 Glycosyl hydrolases family 8 LQRI_2014 PF00404 Dockerin type I domain LQRI_2015 PF00248 Aldo/keto reductase family LQRI_2016 PF00462 Glutaredoxin LQRI_2017 PF00501 AMP-binding enzyme LQRI_2017 PF13193 AMP-binding enzyme C-terminal domain LQRI_2018 PF13302 Acetyltransferase (GNAT) domain LQRI_2020 PF06463 Molybdenum Cofactor Synthesis C LQRI_2020 PF04055 Radical SAM superfamily LQRI_2022 PF01370 NAD dependent epimerase/dehydratase family LQRI_2029 PF00580 UvrD/REP helicase N-terminal domain LQRI_2029 PF13361 UvrD-like helicase C-terminal domain LQRI_2030 PF02463 RecF/RecN/SMC N terminal domain LQRI_2031 PF03747 ADP-ribosylglycohydrolase LQRI_2033 PF00872 Transposase, Mutator family LQRI_2041 PF00149 Calcineurin-like phosphoesterase LQRI_2042 PF00342 Phosphoglucose isomerase LQRI_2044 PF03147 Ferredoxin-fold anticodon binding domain LQRI_2044 PF03483 B3/4 domain LQRI_2044 PF01588 Putative tRNA binding domain LQRI_2044 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LQRI_2044 PF03484 tRNA synthetase B5 domain LQRI_2045 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LQRI_2045 PF01409 tRNA synthetases class II core domain (F) LQRI_2047 PF00232 Glycosyl hydrolase family 1 LQRI_2049 PF00722 Glycosyl hydrolases family 16 LQRI_2049 PF00404 Dockerin type I domain LQRI_2050 PF00356 Bacterial regulatory proteins, lacI family LQRI_2051 PF00535 Glycosyl transferase family 2 LQRI_2053 PF01368 DHH family LQRI_2053 PF02272 DHHA1 domain LQRI_2053 PF17768 RecJ OB domain LQRI_2053 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LQRI_2055 PF13361 UvrD-like helicase C-terminal domain LQRI_2055 PF00580 UvrD/REP helicase N-terminal domain LQRI_2059 PF03951 Glutamine synthetase, beta-Grasp domain LQRI_2059 PF00120 Glutamine synthetase, catalytic domain LQRI_2061 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LQRI_2061 PF18267 Rubredoxin NAD+ reductase C-terminal domain LQRI_2061 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LQRI_2061 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_2061 PF04324 BFD-like [2Fe-2S] binding domain LQRI_2062 PF13247 4Fe-4S dicluster domain LQRI_2062 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LQRI_2062 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_2063 PF13187 4Fe-4S dicluster domain LQRI_2063 PF01645 Conserved region in glutamate synthase LQRI_2064 PF00310 Glutamine amidotransferases class-II LQRI_2065 PF12437 Glutamine synthetase type III N terminal LQRI_2065 PF18318 Glutamine synthetase C-terminal domain LQRI_2065 PF00120 Glutamine synthetase, catalytic domain LQRI_2069 PF00999 Sodium/hydrogen exchanger family LQRI_2070 PF00722 Glycosyl hydrolases family 16 LQRI_2070 PF00404 Dockerin type I domain LQRI_2071 PF01270 Glycosyl hydrolases family 8 LQRI_2071 PF00404 Dockerin type I domain LQRI_2072 PF01725 Ham1 family LQRI_2073 PF01138 3' exoribonuclease family, domain 1 LQRI_2073 PF03725 3' exoribonuclease family, domain 2 LQRI_2074 PF10646 Sporulation and spore germination LQRI_2075 PF16363 GDP-mannose 4,6 dehydratase LQRI_2076 PF01520 N-acetylmuramoyl-L-alanine amidase LQRI_2078 PF02677 Epoxyqueuosine reductase QueH LQRI_2079 PF17864 RuvB AAA lid domain LQRI_2079 PF05491 RuvB C-terminal winged helix domain LQRI_2079 PF05496 Holliday junction DNA helicase RuvB P-loop domain LQRI_2080 PF07499 RuvA, C-terminal domain LQRI_2080 PF01330 RuvA N terminal domain LQRI_2081 PF02075 Crossover junction endodeoxyribonuclease RuvC LQRI_2082 PF00764 Arginosuccinate synthase LQRI_2083 PF14698 Argininosuccinate lyase C-terminal LQRI_2083 PF00206 Lyase LQRI_2087 PF00884 Sulfatase LQRI_2088 PF01593 Flavin containing amine oxidoreductase LQRI_2093 PF00072 Response regulator receiver domain LQRI_2093 PF01339 CheB methylesterase LQRI_2094 PF08331 Domain of unknown function (DUF1730) LQRI_2096 PF01985 CRS1 / YhbY (CRM) domain LQRI_2098 PF01018 GTP1/OBG LQRI_2098 PF09269 Domain of unknown function (DUF1967) LQRI_2098 PF01926 50S ribosome-binding GTPase LQRI_2099 PF01016 Ribosomal L27 protein LQRI_2101 PF00829 Ribosomal prokaryotic L21 protein LQRI_2102 PF10150 Ribonuclease E/G family LQRI_2102 PF00575 S1 RNA binding domain LQRI_2105 PF11258 Protein of unknown function (DUF3048) N-terminal domain LQRI_2105 PF17479 Protein of unknown function (DUF3048) C-terminal domain LQRI_2106 PF06949 Protein of unknown function (DUF1292) LQRI_2107 PF03652 Holliday junction resolvase LQRI_2108 PF00248 Aldo/keto reductase family LQRI_2109 PF06135 IreB regulatory phosphoprotein LQRI_2110 PF04055 Radical SAM superfamily LQRI_2110 PF01938 TRAM domain LQRI_2110 PF00919 Uncharacterized protein family UPF0004 LQRI_2113 PF17876 Cold shock domain LQRI_2113 PF08206 Ribonuclease B OB domain LQRI_2113 PF00773 RNB domain LQRI_2113 PF00575 S1 RNA binding domain LQRI_2114 PF01797 Transposase IS200 like LQRI_2117 PF00113 Enolase, C-terminal TIM barrel domain LQRI_2117 PF03952 Enolase, N-terminal domain LQRI_2118 PF01966 HD domain LQRI_2119 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LQRI_2119 PF01676 Metalloenzyme superfamily LQRI_2120 PF00121 Triosephosphate isomerase LQRI_2121 PF00162 Phosphoglycerate kinase LQRI_2122 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LQRI_2122 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LQRI_2124 PF00698 Acyl transferase domain LQRI_2124 PF00668 Condensation domain LQRI_2124 PF16197 Ketoacyl-synthetase C-terminal extension LQRI_2124 PF00109 Beta-ketoacyl synthase, N-terminal domain LQRI_2124 PF02801 Beta-ketoacyl synthase, C-terminal domain LQRI_2124 PF00550 Phosphopantetheine attachment site LQRI_2126 PF00501 AMP-binding enzyme LQRI_2126 PF13193 AMP-binding enzyme C-terminal domain LQRI_2127 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LQRI_2127 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LQRI_2128 PF00550 Phosphopantetheine attachment site LQRI_2129 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LQRI_2129 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LQRI_2130 PF01966 HD domain LQRI_2130 PF00072 Response regulator receiver domain LQRI_2131 PF00588 SpoU rRNA Methylase family LQRI_2133 PF14097 Stage V sporulation protein AE1 LQRI_2134 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LQRI_2136 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LQRI_2138 PF04542 Sigma-70 region 2 LQRI_2138 PF04539 Sigma-70 region 3 LQRI_2138 PF04545 Sigma-70, region 4 LQRI_2139 PF13581 Histidine kinase-like ATPase domain LQRI_2140 PF01740 STAS domain LQRI_2141 PF00381 PTS HPr component phosphorylation site LQRI_2142 PF10298 WhiA N-terminal LAGLIDADG-like domain LQRI_2142 PF02650 WhiA C-terminal HTH domain LQRI_2142 PF14527 WhiA LAGLIDADG-like domain LQRI_2144 PF01933 Uncharacterised protein family UPF0052 LQRI_2145 PF03668 P-loop ATPase protein family LQRI_2146 PF01565 FAD binding domain LQRI_2146 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LQRI_2147 PF02811 PHP domain LQRI_2148 PF07475 HPr Serine kinase C-terminal domain LQRI_2148 PF02603 HPr Serine kinase N terminus LQRI_2151 PF00885 6,7-dimethyl-8-ribityllumazine synthase LQRI_2152 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LQRI_2152 PF00925 GTP cyclohydrolase II LQRI_2153 PF00677 Lumazine binding domain LQRI_2154 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQRI_2154 PF01872 RibD C-terminal domain LQRI_2155 PF01894 Uncharacterised protein family UPF0047 LQRI_2156 PF02390 Putative methyltransferase LQRI_2157 PF00465 Iron-containing alcohol dehydrogenase LQRI_2159 PF02219 Methylenetetrahydrofolate reductase LQRI_2160 PF00571 CBS domain LQRI_2160 PF02163 Peptidase family M50 LQRI_2161 PF01551 Peptidase family M23 LQRI_2162 PF03698 Uncharacterised protein family (UPF0180) LQRI_2163 PF02142 MGS-like domain LQRI_2164 PF03776 Septum formation topological specificity factor MinE LQRI_2165 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LQRI_2166 PF03775 Septum formation inhibitor MinC, C-terminal domain LQRI_2167 PF03717 Penicillin-binding Protein dimerisation domain LQRI_2167 PF00905 Penicillin binding protein transpeptidase domain LQRI_2171 PF02545 Maf-like protein LQRI_2173 PF05389 Negative regulator of genetic competence (MecA) LQRI_2176 PF02190 ATP-dependent protease La (LON) substrate-binding domain LQRI_2176 PF05362 Lon protease (S16) C-terminal proteolytic domain LQRI_2176 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_2177 PF01960 ArgJ family LQRI_2178 PF01584 CheW-like domain LQRI_2187 PF00942 Cellulose binding domain LQRI_2187 PF03442 Carbohydrate binding domain X2 LQRI_2187 PF02011 Glycosyl hydrolase family 48 LQRI_2188 PF00152 tRNA synthetases class II (D, K and N) LQRI_2188 PF01336 OB-fold nucleic acid binding domain LQRI_2189 PF03590 Aspartate-ammonia ligase LQRI_2190 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LQRI_2191 PF02146 Sir2 family LQRI_2194 PF02690 Na+/Pi-cotransporter LQRI_2196 PF00884 Sulfatase LQRI_2197 PF02632 BioY family LQRI_2198 PF07516 SecA Wing and Scaffold domain LQRI_2198 PF01043 SecA preprotein cross-linking domain LQRI_2198 PF07517 SecA DEAD-like domain LQRI_2198 PF02810 SEC-C motif LQRI_2199 PF00942 Cellulose binding domain LQRI_2199 PF12791 Anti-sigma factor N-terminus LQRI_2202 PF02368 Bacterial Ig-like domain (group 2) LQRI_2204 PF02638 Glycosyl hydrolase-like 10 LQRI_2205 PF02867 Ribonucleotide reductase, barrel domain LQRI_2205 PF00317 Ribonucleotide reductase, all-alpha domain LQRI_2205 PF03477 ATP cone domain LQRI_2214 PF03422 Carbohydrate binding module (family 6) LQRI_2214 PF00404 Dockerin type I domain LQRI_2214 PF00756 Putative esterase LQRI_2214 PF00331 Glycosyl hydrolase family 10 LQRI_2215 PF00759 Glycosyl hydrolase family 9 LQRI_2215 PF00942 Cellulose binding domain LQRI_2216 PF01926 50S ribosome-binding GTPase LQRI_2216 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LQRI_2218 PF00759 Glycosyl hydrolase family 9 LQRI_2218 PF00942 Cellulose binding domain LQRI_2219 PF00672 HAMP domain LQRI_2219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_2219 PF12729 Four helix bundle sensory module for signal transduction LQRI_2220 PF01584 CheW-like domain LQRI_2221 PF00672 HAMP domain LQRI_2221 PF12729 Four helix bundle sensory module for signal transduction LQRI_2221 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_2222 PF01584 CheW-like domain LQRI_2223 PF00011 Hsp20/alpha crystallin family LQRI_2224 PF03063 Prismane/CO dehydrogenase family LQRI_2225 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LQRI_2225 PF02256 Iron hydrogenase small subunit LQRI_2225 PF02906 Iron only hydrogenase large subunit, C-terminal domain LQRI_2225 PF00037 4Fe-4S binding domain LQRI_2227 PF00679 Elongation factor G C-terminus LQRI_2227 PF03764 Elongation factor G, domain IV LQRI_2227 PF00009 Elongation factor Tu GTP binding domain LQRI_2227 PF14492 Elongation Factor G, domain II LQRI_2228 PF02156 Glycosyl hydrolase family 26 LQRI_2233 PF04715 Anthranilate synthase component I, N terminal region LQRI_2233 PF00425 chorismate binding enzyme LQRI_2234 PF04715 Anthranilate synthase component I, N terminal region LQRI_2234 PF00425 chorismate binding enzyme LQRI_2235 PF04715 Anthranilate synthase component I, N terminal region LQRI_2235 PF00425 chorismate binding enzyme LQRI_2236 PF00202 Aminotransferase class-III LQRI_2237 PF13847 Methyltransferase domain LQRI_2238 PF12697 Alpha/beta hydrolase family LQRI_2239 PF00155 Aminotransferase class I and II LQRI_2241 PF04055 Radical SAM superfamily LQRI_2241 PF06968 Biotin and Thiamin Synthesis associated domain LQRI_2244 PF07556 Protein of unknown function (DUF1538) LQRI_2246 PF04616 Glycosyl hydrolases family 43 LQRI_2246 PF16369 C-terminal lipocalin-like domain LQRI_2256 PF00872 Transposase, Mutator family LQRI_2260 PF00578 AhpC/TSA family LQRI_2264 PF04542 Sigma-70 region 2 LQRI_2264 PF08281 Sigma-70, region 4 LQRI_2266 PF03425 Carbohydrate binding domain (family 11) LQRI_2266 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_2266 PF00404 Dockerin type I domain LQRI_2266 PF02156 Glycosyl hydrolase family 26 LQRI_2267 PF03358 NADPH-dependent FMN reductase LQRI_2270 PF02142 MGS-like domain LQRI_2270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQRI_2270 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LQRI_2271 PF00692 dUTPase LQRI_2272 PF00440 Bacterial regulatory proteins, tetR family LQRI_2274 PF03176 MMPL family LQRI_2279 PF01613 Flavin reductase like domain LQRI_2279 PF00753 Metallo-beta-lactamase superfamily LQRI_2280 PF00293 NUDIX domain LQRI_2282 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_2282 PF00672 HAMP domain LQRI_2282 PF02743 Cache domain LQRI_2287 PF03551 Transcriptional regulator PadR-like family LQRI_2287 PF10400 Virulence activator alpha C-term LQRI_2288 PF00892 EamA-like transporter family LQRI_2291 PF12729 Four helix bundle sensory module for signal transduction LQRI_2291 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_2291 PF00672 HAMP domain LQRI_2292 PF00909 Ammonium Transporter Family LQRI_2293 PF00664 ABC transporter transmembrane region LQRI_2293 PF00005 ABC transporter LQRI_2294 PF00005 ABC transporter LQRI_2294 PF00664 ABC transporter transmembrane region LQRI_2298 PF00395 S-layer homology domain LQRI_2298 PF00963 Cohesin domain LQRI_2302 PF03960 ArsC family LQRI_2305 PF01555 DNA methylase LQRI_2306 PF04556 DpnII restriction endonuclease LQRI_2307 PF02086 D12 class N6 adenine-specific DNA methyltransferase LQRI_2311 PF03193 RsgA GTPase LQRI_2315 PF10672 S-adenosylmethionine-dependent methyltransferase LQRI_2315 PF17785 PUA-like domain LQRI_2323 PF02687 FtsX-like permease family LQRI_2324 PF00005 ABC transporter LQRI_2325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2326 PF00486 Transcriptional regulatory protein, C terminal LQRI_2326 PF00072 Response regulator receiver domain LQRI_2333 PF00005 ABC transporter LQRI_2333 PF13732 Domain of unknown function (DUF4162) LQRI_2335 PF01381 Helix-turn-helix LQRI_2336 PF12437 Glutamine synthetase type III N terminal LQRI_2336 PF18318 Glutamine synthetase C-terminal domain LQRI_2336 PF00120 Glutamine synthetase, catalytic domain LQRI_2337 PF02637 GatB domain LQRI_2337 PF02934 GatB/GatE catalytic domain LQRI_2338 PF01425 Amidase LQRI_2339 PF02686 Glu-tRNAGln amidotransferase C subunit LQRI_2340 PF02938 GAD domain LQRI_2340 PF00152 tRNA synthetases class II (D, K and N) LQRI_2340 PF01336 OB-fold nucleic acid binding domain LQRI_2344 PF00378 Enoyl-CoA hydratase/isomerase LQRI_2345 PF13649 Methyltransferase domain LQRI_2346 PF00190 Cupin LQRI_2349 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LQRI_2349 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LQRI_2350 PF03180 NLPA lipoprotein LQRI_2351 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_2352 PF00005 ABC transporter LQRI_2352 PF09383 NIL domain LQRI_2354 PF01053 Cys/Met metabolism PLP-dependent enzyme LQRI_2355 PF00291 Pyridoxal-phosphate dependent enzyme LQRI_2358 PF00005 ABC transporter LQRI_2360 PF00148 Nitrogenase component 1 type Oxidoreductase LQRI_2361 PF00148 Nitrogenase component 1 type Oxidoreductase LQRI_2362 PF02579 Dinitrogenase iron-molybdenum cofactor LQRI_2362 PF04055 Radical SAM superfamily LQRI_2363 PF02579 Dinitrogenase iron-molybdenum cofactor LQRI_2363 PF04055 Radical SAM superfamily LQRI_2364 PF01053 Cys/Met metabolism PLP-dependent enzyme LQRI_2366 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_2367 PF00005 ABC transporter LQRI_2368 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family LQRI_2370 PF01048 Phosphorylase superfamily LQRI_2371 PF02608 ABC transporter substrate-binding protein PnrA-like LQRI_2372 PF11230 Protein of unknown function (DUF3029) LQRI_2373 PF04055 Radical SAM superfamily LQRI_2374 PF00005 ABC transporter LQRI_2375 PF02653 Branched-chain amino acid transport system / permease component LQRI_2376 PF02653 Branched-chain amino acid transport system / permease component LQRI_2377 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LQRI_2378 PF01791 DeoC/LacD family aldolase LQRI_2379 PF12833 Helix-turn-helix domain LQRI_2379 PF00072 Response regulator receiver domain LQRI_2380 PF06580 Histidine kinase LQRI_2381 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_2382 PF08402 TOBE domain LQRI_2382 PF00005 ABC transporter LQRI_2388 PF02595 Glycerate kinase family LQRI_2393 PF00271 Helicase conserved C-terminal domain LQRI_2393 PF00176 SNF2 family N-terminal domain LQRI_2402 PF00293 NUDIX domain LQRI_2403 PF13936 Helix-turn-helix domain LQRI_2404 PF13408 Recombinase zinc beta ribbon domain LQRI_2404 PF07508 Recombinase LQRI_2406 PF02796 Helix-turn-helix domain of resolvase LQRI_2406 PF00239 Resolvase, N terminal domain LQRI_2408 PF01510 N-acetylmuramoyl-L-alanine amidase LQRI_2408 PF01476 LysM domain LQRI_2408 PF01471 Putative peptidoglycan binding domain LQRI_2409 PF05105 Bacteriophage holin family LQRI_2424 PF00574 Clp protease LQRI_2425 PF04860 Phage portal protein LQRI_2426 PF03354 Phage Terminase LQRI_2433 PF01555 DNA methylase LQRI_2434 PF01555 DNA methylase LQRI_2440 PF00005 ABC transporter LQRI_2442 PF13493 Domain of unknown function (DUF4118) LQRI_2442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2442 PF00512 His Kinase A (phospho-acceptor) domain LQRI_2442 PF02702 Osmosensitive K+ channel His kinase sensor domain LQRI_2443 PF00072 Response regulator receiver domain LQRI_2443 PF00486 Transcriptional regulatory protein, C terminal LQRI_2444 PF16123 Hydroxyacylglutathione hydrolase C-terminus LQRI_2444 PF00753 Metallo-beta-lactamase superfamily LQRI_2452 PF01938 TRAM domain LQRI_2452 PF05958 tRNA (Uracil-5-)-methyltransferase LQRI_2453 PF00005 ABC transporter LQRI_2454 PF01032 FecCD transport family LQRI_2455 PF01497 Periplasmic binding protein LQRI_2457 PF01476 LysM domain LQRI_2457 PF08525 Opacity-associated protein A N-terminal motif LQRI_2457 PF01551 Peptidase family M23 LQRI_2460 PF00912 Transglycosylase LQRI_2460 PF00905 Penicillin binding protein transpeptidase domain LQRI_2461 PF02687 FtsX-like permease family LQRI_2461 PF12704 MacB-like periplasmic core domain LQRI_2463 PF00005 ABC transporter LQRI_2466 PF00696 Amino acid kinase family LQRI_2471 PF02915 Rubrerythrin LQRI_2472 PF02698 DUF218 domain LQRI_2473 PF13654 AAA domain LQRI_2473 PF05362 Lon protease (S16) C-terminal proteolytic domain LQRI_2474 PF00583 Acetyltransferase (GNAT) family LQRI_2475 PF00814 Glycoprotease family LQRI_2476 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LQRI_2477 PF01979 Amidohydrolase family LQRI_2482 PF00380 Ribosomal protein S9/S16 LQRI_2483 PF00572 Ribosomal protein L13 LQRI_2485 PF10635 DisA bacterial checkpoint controller linker region LQRI_2485 PF02457 DisA bacterial checkpoint controller nucleotide-binding LQRI_2486 PF18073 Rubredoxin metal binding domain LQRI_2489 PF07724 AAA domain (Cdc48 subfamily) LQRI_2489 PF10431 C-terminal, D2-small domain, of ClpB protein LQRI_2489 PF02861 Clp amino terminal domain, pathogenicity island component LQRI_2489 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_2489 PF17871 AAA lid domain LQRI_2490 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain LQRI_2491 PF02151 UvrB/uvrC motif LQRI_2492 PF05848 CtsR N-terminal HTH domain LQRI_2492 PF17727 CtsR C-terminal dimerization domain LQRI_2494 PF03144 Elongation factor Tu domain 2 LQRI_2494 PF00009 Elongation factor Tu GTP binding domain LQRI_2494 PF14492 Elongation Factor G, domain II LQRI_2494 PF00679 Elongation factor G C-terminus LQRI_2494 PF03764 Elongation factor G, domain IV LQRI_2495 PF00793 DAHP synthetase I family LQRI_2495 PF18152 DAHP synthase ferredoxin-like domain LQRI_2496 PF01842 ACT domain LQRI_2496 PF02153 Prephenate dehydrogenase LQRI_2497 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQRI_2498 PF02629 CoA binding domain LQRI_2498 PF06971 Putative DNA-binding protein N-terminus LQRI_2499 PF12848 ABC transporter LQRI_2499 PF00005 ABC transporter LQRI_2499 PF16326 ABC transporter C-terminal domain LQRI_2500 PF00704 Glycosyl hydrolases family 18 LQRI_2500 PF01476 LysM domain LQRI_2501 PF00005 ABC transporter LQRI_2502 PF02361 Cobalt transport protein LQRI_2503 PF01891 Cobalt uptake substrate-specific transmembrane region LQRI_2503 PF13190 PDGLE domain LQRI_2504 PF01520 N-acetylmuramoyl-L-alanine amidase LQRI_2505 PF00072 Response regulator receiver domain LQRI_2505 PF00486 Transcriptional regulatory protein, C terminal LQRI_2506 PF00942 Cellulose binding domain LQRI_2506 PF00963 Cohesin domain LQRI_2506 PF00404 Dockerin type I domain LQRI_2509 PF08281 Sigma-70, region 4 LQRI_2509 PF04542 Sigma-70 region 2 LQRI_2510 PF05569 BlaR1 peptidase M56 LQRI_2510 PF00905 Penicillin binding protein transpeptidase domain LQRI_2511 PF03965 Penicillinase repressor LQRI_2512 PF01774 UreD urease accessory protein LQRI_2513 PF02492 CobW/HypB/UreG, nucleotide-binding domain LQRI_2514 PF01730 UreF LQRI_2515 PF05194 UreE urease accessory protein, C-terminal domain LQRI_2515 PF02814 UreE urease accessory protein, N-terminal domain LQRI_2516 PF05194 UreE urease accessory protein, C-terminal domain LQRI_2516 PF02814 UreE urease accessory protein, N-terminal domain LQRI_2517 PF00449 Urease alpha-subunit, N-terminal domain LQRI_2517 PF01979 Amidohydrolase family LQRI_2518 PF00699 Urease beta subunit LQRI_2519 PF00547 Urease, gamma subunit LQRI_2520 PF00005 ABC transporter LQRI_2521 PF00005 ABC transporter LQRI_2521 PF12399 Branched-chain amino acid ATP-binding cassette transporter LQRI_2523 PF02653 Branched-chain amino acid transport system / permease component LQRI_2525 PF12833 Helix-turn-helix domain LQRI_2525 PF00072 Response regulator receiver domain LQRI_2526 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LQRI_2526 PF00072 Response regulator receiver domain LQRI_2526 PF01627 Hpt domain LQRI_2526 PF00672 HAMP domain LQRI_2526 PF00512 His Kinase A (phospho-acceptor) domain LQRI_2526 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2527 PF00512 His Kinase A (phospho-acceptor) domain LQRI_2527 PF08446 PAS fold LQRI_2527 PF00360 Phytochrome region LQRI_2527 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2527 PF01590 GAF domain LQRI_2535 PF00872 Transposase, Mutator family LQRI_2541 PF00872 Transposase, Mutator family LQRI_2556 PF00331 Glycosyl hydrolase family 10 LQRI_2556 PF00404 Dockerin type I domain LQRI_2556 PF02018 Carbohydrate binding domain LQRI_2556 PF00756 Putative esterase LQRI_2556 PF00404 Dockerin type I domain LQRI_2556 PF02018 Carbohydrate binding domain LQRI_2556 PF00756 Putative esterase LQRI_2556 PF00331 Glycosyl hydrolase family 10 LQRI_2557 PF04055 Radical SAM superfamily LQRI_2557 PF06968 Biotin and Thiamin Synthesis associated domain LQRI_2558 PF00291 Pyridoxal-phosphate dependent enzyme LQRI_2559 PF02540 NAD synthase LQRI_2560 PF01053 Cys/Met metabolism PLP-dependent enzyme LQRI_2561 PF02082 Transcriptional regulator LQRI_2562 PF02082 Transcriptional regulator LQRI_2563 PF04204 Homoserine O-succinyltransferase LQRI_2564 PF00989 PAS fold LQRI_2564 PF00512 His Kinase A (phospho-acceptor) domain LQRI_2564 PF18698 Histidine kinase sensor domain LQRI_2564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2564 PF00672 HAMP domain LQRI_2565 PF00486 Transcriptional regulatory protein, C terminal LQRI_2565 PF00072 Response regulator receiver domain LQRI_2566 PF00403 Heavy-metal-associated domain LQRI_2570 PF01430 Hsp33 protein LQRI_2571 PF00313 'Cold-shock' DNA-binding domain LQRI_2572 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LQRI_2575 PF01471 Putative peptidoglycan binding domain LQRI_2575 PF03572 Peptidase family S41 LQRI_2575 PF17820 PDZ domain LQRI_2576 PF01476 LysM domain LQRI_2576 PF01551 Peptidase family M23 LQRI_2577 PF02687 FtsX-like permease family LQRI_2577 PF18075 FtsX extracellular domain LQRI_2578 PF00005 ABC transporter LQRI_2579 PF13556 PucR C-terminal helix-turn-helix domain LQRI_2579 PF17853 GGDEF-like domain LQRI_2579 PF05651 Putative sugar diacid recognition LQRI_2580 PF03459 TOBE domain LQRI_2580 PF17912 MalK OB fold domain LQRI_2580 PF00005 ABC transporter LQRI_2581 PF01118 Semialdehyde dehydrogenase, NAD binding domain LQRI_2581 PF02774 Semialdehyde dehydrogenase, dimerisation domain LQRI_2582 PF00696 Amino acid kinase family LQRI_2584 PF00202 Aminotransferase class-III LQRI_2585 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LQRI_2585 PF00117 Glutamine amidotransferase class-I LQRI_2586 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQRI_2586 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LQRI_2586 PF02142 MGS-like domain LQRI_2587 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LQRI_2587 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LQRI_2590 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_2590 PF00404 Dockerin type I domain LQRI_2594 PF03551 Transcriptional regulator PadR-like family LQRI_2595 PF00149 Calcineurin-like phosphoesterase LQRI_2597 PF02557 D-alanyl-D-alanine carboxypeptidase LQRI_2598 PF13936 Helix-turn-helix domain LQRI_2599 PF00872 Transposase, Mutator family LQRI_2601 PF13739 Deacetylase PdaC LQRI_2601 PF01522 Polysaccharide deacetylase LQRI_2601 PF11738 Protein of unknown function (DUF3298) LQRI_2602 PF13193 AMP-binding enzyme C-terminal domain LQRI_2602 PF00550 Phosphopantetheine attachment site LQRI_2602 PF00668 Condensation domain LQRI_2602 PF00501 AMP-binding enzyme LQRI_2605 PF00668 Condensation domain LQRI_2605 PF13193 AMP-binding enzyme C-terminal domain LQRI_2605 PF16197 Ketoacyl-synthetase C-terminal extension LQRI_2605 PF00109 Beta-ketoacyl synthase, N-terminal domain LQRI_2605 PF02801 Beta-ketoacyl synthase, C-terminal domain LQRI_2605 PF08659 KR domain LQRI_2605 PF00550 Phosphopantetheine attachment site LQRI_2605 PF00501 AMP-binding enzyme LQRI_2605 PF14765 Polyketide synthase dehydratase LQRI_2610 PF01797 Transposase IS200 like LQRI_2614 PF16736 Single Cache-like LQRI_2614 PF00989 PAS fold LQRI_2614 PF00512 His Kinase A (phospho-acceptor) domain LQRI_2614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2615 PF00486 Transcriptional regulatory protein, C terminal LQRI_2615 PF00072 Response regulator receiver domain LQRI_2616 PF00690 Cation transporter/ATPase, N-terminus LQRI_2616 PF00689 Cation transporting ATPase, C-terminus LQRI_2617 PF01276 Orn/Lys/Arg decarboxylase, major domain LQRI_2617 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LQRI_2618 PF02308 MgtC family LQRI_2619 PF09551 Stage II sporulation protein R (spore_II_R) LQRI_2620 PF03551 Transcriptional regulator PadR-like family LQRI_2622 PF00117 Glutamine amidotransferase class-I LQRI_2622 PF06418 CTP synthase N-terminus LQRI_2623 PF00872 Transposase, Mutator family LQRI_2624 PF00872 Transposase, Mutator family LQRI_2627 PF01471 Putative peptidoglycan binding domain LQRI_2627 PF17820 PDZ domain LQRI_2627 PF03572 Peptidase family S41 LQRI_2628 PF03424 Carbohydrate binding domain (family 17/28) LQRI_2628 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_2628 PF00395 S-layer homology domain LQRI_2632 PF03485 Arginyl tRNA synthetase N terminal domain LQRI_2632 PF00750 tRNA synthetases class I (R) LQRI_2632 PF05746 DALR anticodon binding domain LQRI_2634 PF01177 Asp/Glu/Hydantoin racemase LQRI_2635 PF01820 D-ala D-ala ligase N-terminus LQRI_2635 PF07478 D-ala D-ala ligase C-terminus LQRI_2636 PF03448 MgtE intracellular N domain LQRI_2636 PF00571 CBS domain LQRI_2636 PF01769 Divalent cation transporter LQRI_2641 PF01791 DeoC/LacD family aldolase LQRI_2642 PF04308 Ribonuclease H-like LQRI_2643 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_2644 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_2645 PF00578 AhpC/TSA family LQRI_2646 PF02683 Cytochrome C biogenesis protein transmembrane region LQRI_2651 PF07486 Cell Wall Hydrolase LQRI_2651 PF01471 Putative peptidoglycan binding domain LQRI_2653 PF17674 HHH domain LQRI_2653 PF00575 S1 RNA binding domain LQRI_2653 PF09371 Tex-like protein N-terminal domain LQRI_2653 PF16921 Tex protein YqgF-like domain LQRI_2654 PF00294 pfkB family carbohydrate kinase LQRI_2657 PF03851 UV-endonuclease UvdE LQRI_2658 PF13649 Methyltransferase domain LQRI_2660 PF00483 Nucleotidyl transferase LQRI_2661 PF00849 RNA pseudouridylate synthase LQRI_2662 PF00331 Glycosyl hydrolase family 10 LQRI_2662 PF00756 Putative esterase LQRI_2662 PF00404 Dockerin type I domain LQRI_2662 PF03422 Carbohydrate binding module (family 6) LQRI_2663 PF13192 Thioredoxin domain LQRI_2663 PF07992 Pyridine nucleotide-disulphide oxidoreductase LQRI_2664 PF00578 AhpC/TSA family LQRI_2664 PF10417 C-terminal domain of 1-Cys peroxiredoxin LQRI_2667 PF11638 DnaA N-terminal domain LQRI_2667 PF08299 Bacterial dnaA protein helix-turn-helix LQRI_2667 PF00308 Bacterial dnaA protein LQRI_2668 PF01580 FtsK/SpoIIIE family LQRI_2668 PF12538 DNA transporter LQRI_2698 PF00872 Transposase, Mutator family LQRI_2704 PF02463 RecF/RecN/SMC N terminal domain LQRI_2705 PF02796 Helix-turn-helix domain of resolvase LQRI_2705 PF00665 Integrase core domain LQRI_2715 PF00872 Transposase, Mutator family LQRI_2728 PF01797 Transposase IS200 like LQRI_2731 PF00069 Protein kinase domain LQRI_2735 PF00872 Transposase, Mutator family LQRI_2737 PF12705 PD-(D/E)XK nuclease superfamily LQRI_2737 PF00580 UvrD/REP helicase N-terminal domain LQRI_2737 PF13361 UvrD-like helicase C-terminal domain LQRI_2738 PF12705 PD-(D/E)XK nuclease superfamily LQRI_2755 PF03787 RAMP superfamily LQRI_2762 PF01661 Macro domain LQRI_2763 PF04542 Sigma-70 region 2 LQRI_2763 PF08281 Sigma-70, region 4 LQRI_2765 PF08032 RNA 2'-O ribose methyltransferase substrate binding LQRI_2765 PF00588 SpoU rRNA Methylase family LQRI_2766 PF00636 Ribonuclease III domain LQRI_2767 PF03323 Bacillus/Clostridium GerA spore germination protein LQRI_2769 PF05504 Spore germination B3/ GerAC like, C-terminal LQRI_2770 PF09190 DALR domain LQRI_2770 PF01406 tRNA synthetases class I (C) catalytic domain LQRI_2771 PF06426 Serine acetyltransferase, N-terminal LQRI_2771 PF00132 Bacterial transferase hexapeptide (six repeats) LQRI_2778 PF07687 Peptidase dimerisation domain LQRI_2778 PF01546 Peptidase family M20/M25/M40 LQRI_2779 PF04070 Domain of unknown function (DUF378) LQRI_2781 PF01709 Transcriptional regulator LQRI_2782 PF00672 HAMP domain LQRI_2782 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2782 PF18698 Histidine kinase sensor domain LQRI_2782 PF00512 His Kinase A (phospho-acceptor) domain LQRI_2782 PF00989 PAS fold LQRI_2784 PF09186 Domain of unknown function (DUF1949) LQRI_2784 PF01205 Uncharacterized protein family UPF0029 LQRI_2785 PF10502 Signal peptidase, peptidase S26 LQRI_2786 PF00293 NUDIX domain LQRI_2787 PF13167 GTP-binding GTPase N-terminal LQRI_2787 PF01926 50S ribosome-binding GTPase LQRI_2787 PF16360 GTP-binding GTPase Middle Region LQRI_2789 PF00817 impB/mucB/samB family LQRI_2789 PF11799 impB/mucB/samB family C-terminal domain LQRI_2790 PF00692 dUTPase LQRI_2791 PF01136 Peptidase family U32 LQRI_2791 PF16325 Peptidase family U32 C-terminal domain LQRI_2792 PF01676 Metalloenzyme superfamily LQRI_2792 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LQRI_2794 PF00404 Dockerin type I domain LQRI_2794 PF02011 Glycosyl hydrolase family 48 LQRI_2797 PF00398 Ribosomal RNA adenine dimethylase LQRI_2798 PF03990 G5-linked-Ubiquitin-like domain LQRI_2798 PF07501 G5 domain LQRI_2798 PF06725 3D domain LQRI_2800 PF01026 TatD related DNase LQRI_2801 PF08264 Anticodon-binding domain of tRNA LQRI_2801 PF09334 tRNA synthetases class I (M) LQRI_2801 PF01588 Putative tRNA binding domain LQRI_2802 PF10776 Protein of unknown function (DUF2600) LQRI_2803 PF07670 Nucleoside recognition LQRI_2804 PF07670 Nucleoside recognition LQRI_2805 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LQRI_2805 PF18277 AbrB C-terminal domain LQRI_2806 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LQRI_2807 PF05175 Methyltransferase small domain LQRI_2808 PF00037 4Fe-4S binding domain LQRI_2809 PF04468 PSP1 C-terminal conserved region LQRI_2810 PF12169 DNA polymerase III subunits gamma and tau domain III LQRI_2811 PF03885 Protein of unknown function (DUF327) LQRI_2813 PF01276 Orn/Lys/Arg decarboxylase, major domain LQRI_2813 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LQRI_2816 PF00005 ABC transporter LQRI_2818 PF00486 Transcriptional regulatory protein, C terminal LQRI_2818 PF00072 Response regulator receiver domain LQRI_2819 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2820 PF01910 Thiamine-binding protein LQRI_2821 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_2822 PF09084 NMT1/THI5 like LQRI_2823 PF00005 ABC transporter LQRI_2824 PF00331 Glycosyl hydrolase family 10 LQRI_2824 PF12791 Anti-sigma factor N-terminus LQRI_2825 PF04542 Sigma-70 region 2 LQRI_2830 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_2831 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_2832 PF17863 AAA lid domain LQRI_2832 PF07726 ATPase family associated with various cellular activities (AAA) LQRI_2839 PF00331 Glycosyl hydrolase family 10 LQRI_2839 PF00756 Putative esterase LQRI_2839 PF00404 Dockerin type I domain LQRI_2839 PF02018 Carbohydrate binding domain LQRI_2840 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain LQRI_2840 PF04616 Glycosyl hydrolases family 43 LQRI_2841 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain LQRI_2841 PF04616 Glycosyl hydrolases family 43 LQRI_2844 PF13286 Phosphohydrolase-associated domain LQRI_2844 PF01966 HD domain LQRI_2845 PF02132 RecR protein LQRI_2845 PF13662 Toprim domain LQRI_2846 PF02575 YbaB/EbfC DNA-binding family LQRI_2847 PF12169 DNA polymerase III subunits gamma and tau domain III LQRI_2850 PF00150 Cellulase (glycosyl hydrolase family 5) LQRI_2850 PF00942 Cellulose binding domain LQRI_2850 PF00331 Glycosyl hydrolase family 10 LQRI_2857 PF00963 Cohesin domain LQRI_2857 PF00395 S-layer homology domain LQRI_2860 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 LQRI_2865 PF07722 Peptidase C26 LQRI_2866 PF01740 STAS domain LQRI_2868 PF00301 Rubredoxin LQRI_2869 PF06866 Protein of unknown function (DUF1256) LQRI_2873 PF00149 Calcineurin-like phosphoesterase LQRI_2876 PF01197 Ribosomal protein L31 LQRI_2877 PF07498 Rho termination factor, N-terminal domain LQRI_2877 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQRI_2877 PF07497 Rho termination factor, RNA-binding domain LQRI_2880 PF02517 CPBP intramembrane metalloprotease LQRI_2888 PF00544 Pectate lyase LQRI_2889 PF00654 Voltage gated chloride channel LQRI_2890 PF01171 PP-loop family LQRI_2892 PF00483 Nucleotidyl transferase LQRI_2893 PF03631 Virulence factor BrkB LQRI_2894 PF01084 Ribosomal protein S18 LQRI_2895 PF00436 Single-strand binding protein family LQRI_2896 PF01250 Ribosomal protein S6 LQRI_2897 PF00990 Diguanylate cyclase, GGDEF domain LQRI_2897 PF00072 Response regulator receiver domain LQRI_2898 PF01979 Amidohydrolase family LQRI_2899 PF00128 Alpha amylase, catalytic domain LQRI_2899 PF02806 Alpha amylase, C-terminal all-beta domain LQRI_2899 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LQRI_2901 PF00331 Glycosyl hydrolase family 10 LQRI_2901 PF00756 Putative esterase LQRI_2901 PF00404 Dockerin type I domain LQRI_2901 PF03422 Carbohydrate binding module (family 6) LQRI_2902 PF04616 Glycosyl hydrolases family 43 LQRI_2902 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LQRI_2903 PF03422 Carbohydrate binding module (family 6) LQRI_2903 PF00404 Dockerin type I domain LQRI_2903 PF00756 Putative esterase LQRI_2903 PF00331 Glycosyl hydrolase family 10 LQRI_2904 PF03422 Carbohydrate binding module (family 6) LQRI_2904 PF00404 Dockerin type I domain LQRI_2904 PF00756 Putative esterase LQRI_2904 PF00331 Glycosyl hydrolase family 10 LQRI_2905 PF04616 Glycosyl hydrolases family 43 LQRI_2905 PF03422 Carbohydrate binding module (family 6) LQRI_2906 PF00703 Glycosyl hydrolases family 2 LQRI_2906 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LQRI_2906 PF16355 Domain of unknown function (DUF4982) LQRI_2906 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LQRI_2906 PF02837 Glycosyl hydrolases family 2, sugar binding domain LQRI_2909 PF06445 GyrI-like small molecule binding domain LQRI_2909 PF13411 MerR HTH family regulatory protein LQRI_2910 PF02687 FtsX-like permease family LQRI_2911 PF00005 ABC transporter LQRI_2912 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_2913 PF00486 Transcriptional regulatory protein, C terminal LQRI_2913 PF00072 Response regulator receiver domain LQRI_2921 PF01227 GTP cyclohydrolase I LQRI_2922 PF08245 Mur ligase middle domain LQRI_2922 PF02875 Mur ligase family, glutamate ligase domain LQRI_2922 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LQRI_2923 PF03575 Peptidase family S51 LQRI_2925 PF01979 Amidohydrolase family LQRI_2926 PF00717 Peptidase S24-like LQRI_2926 PF01726 LexA DNA binding domain LQRI_2927 PF00180 Isocitrate/isopropylmalate dehydrogenase LQRI_2928 PF00694 Aconitase C-terminal domain LQRI_2929 PF00330 Aconitase family (aconitate hydratase) LQRI_2930 PF02311 AraC-like ligand binding domain LQRI_2930 PF12833 Helix-turn-helix domain LQRI_2931 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LQRI_2935 PF02561 Flagellar protein FliS LQRI_2936 PF07195 Flagellar hook-associated protein 2 C-terminus LQRI_2936 PF02465 Flagellar hook-associated protein 2 N-terminus LQRI_2936 PF07196 Flagellin hook IN motif LQRI_2938 PF16363 GDP-mannose 4,6 dehydratase LQRI_2939 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQRI_2942 PF02911 Formyl transferase, C-terminal domain LQRI_2942 PF00551 Formyl transferase LQRI_2945 PF00550 Phosphopantetheine attachment site LQRI_2947 PF08666 SAF domain LQRI_2947 PF03102 NeuB family LQRI_2948 PF02348 Cytidylyltransferase LQRI_2949 PF08241 Methyltransferase domain LQRI_2950 PF02719 Polysaccharide biosynthesis protein LQRI_2950 PF08485 Polysaccharide biosynthesis protein C-terminal LQRI_2954 PF00669 Bacterial flagellin N-terminal helical region LQRI_2954 PF00700 Bacterial flagellin C-terminal helical region LQRI_2955 PF00669 Bacterial flagellin N-terminal helical region LQRI_2955 PF00700 Bacterial flagellin C-terminal helical region LQRI_2956 PF00171 Aldehyde dehydrogenase family LQRI_2957 PF02599 Global regulator protein family LQRI_2958 PF02623 FliW protein LQRI_2960 PF00700 Bacterial flagellin C-terminal helical region LQRI_2960 PF00669 Bacterial flagellin N-terminal helical region LQRI_2961 PF00460 Flagella basal body rod protein LQRI_2961 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LQRI_2966 PF00156 Phosphoribosyl transferase domain LQRI_2967 PF14490 Helix-hairpin-helix containing domain LQRI_2967 PF13538 UvrD-like helicase C-terminal domain LQRI_2967 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LQRI_2969 PF00438 S-adenosylmethionine synthetase, N-terminal domain LQRI_2969 PF02772 S-adenosylmethionine synthetase, central domain LQRI_2969 PF02773 S-adenosylmethionine synthetase, C-terminal domain LQRI_2971 PF17862 AAA+ lid domain LQRI_2971 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_2971 PF01434 Peptidase family M41 LQRI_2971 PF06480 FtsH Extracellular LQRI_2972 PF00156 Phosphoribosyl transferase domain LQRI_2973 PF11734 TilS substrate C-terminal domain LQRI_2973 PF01171 PP-loop family LQRI_2974 PF03796 DnaB-like helicase C terminal domain LQRI_2974 PF00772 DnaB-like helicase N terminal domain LQRI_2975 PF01281 Ribosomal protein L9, N-terminal domain LQRI_2975 PF03948 Ribosomal protein L9, C-terminal domain LQRI_2976 PF02272 DHHA1 domain LQRI_2976 PF01368 DHH family LQRI_2978 PF01817 Chorismate mutase type II LQRI_2978 PF01842 ACT domain LQRI_2978 PF00800 Prephenate dehydratase LQRI_2980 PF01496 V-type ATPase 116kDa subunit family LQRI_2981 PF00137 ATP synthase subunit C LQRI_2982 PF01991 ATP synthase (E/31 kDa) subunit LQRI_2984 PF01990 ATP synthase (F/14-kDa) subunit LQRI_2985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQRI_2985 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQRI_2985 PF16886 ATPsynthase alpha/beta subunit N-term extension LQRI_2986 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LQRI_2986 PF02874 ATP synthase alpha/beta family, beta-barrel domain LQRI_2987 PF01813 ATP synthase subunit D LQRI_2988 PF00005 ABC transporter LQRI_2988 PF12848 ABC transporter LQRI_2995 PF00004 ATPase family associated with various cellular activities (AAA) LQRI_2995 PF17862 AAA+ lid domain LQRI_2995 PF01434 Peptidase family M41 LQRI_2997 PF00497 Bacterial extracellular solute-binding proteins, family 3 LQRI_2998 PF00528 Binding-protein-dependent transport system inner membrane component LQRI_2999 PF00005 ABC transporter LQRI_3000 PF00072 Response regulator receiver domain LQRI_3000 PF01339 CheB methylesterase LQRI_3001 PF01739 CheR methyltransferase, SAM binding domain LQRI_3001 PF03705 CheR methyltransferase, all-alpha domain LQRI_3002 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LQRI_3003 PF07194 P2 response regulator binding domain LQRI_3003 PF01627 Hpt domain LQRI_3003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_3003 PF01584 CheW-like domain LQRI_3003 PF02895 Signal transducing histidine kinase, homodimeric domain LQRI_3004 PF01584 CheW-like domain LQRI_3005 PF00589 Phage integrase family LQRI_3006 PF12833 Helix-turn-helix domain LQRI_3006 PF06445 GyrI-like small molecule binding domain LQRI_3009 PF00005 ABC transporter LQRI_3015 PF09827 CRISPR associated protein Cas2 LQRI_3016 PF01867 CRISPR associated protein Cas1 LQRI_3018 PF18019 HD domain LQRI_3018 PF00270 DEAD/DEAH box helicase LQRI_3018 PF18395 Cas3 C-terminal domain LQRI_3024 PF02673 Bacitracin resistance protein BacA LQRI_3025 PF01554 MatE LQRI_3028 PF00795 Carbon-nitrogen hydrolase LQRI_3033 PF02590 Predicted SPOUT methyltransferase LQRI_3034 PF00753 Metallo-beta-lactamase superfamily LQRI_3035 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LQRI_3039 PF00672 HAMP domain LQRI_3039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LQRI_3039 PF00512 His Kinase A (phospho-acceptor) domain LQRI_3039 PF13426 PAS domain LQRI_3040 PF00486 Transcriptional regulatory protein, C terminal LQRI_3040 PF00072 Response regulator receiver domain LQRI_3043 PF02719 Polysaccharide biosynthesis protein LQRI_3044 PF14667 Polysaccharide biosynthesis C-terminal domain LQRI_3045 PF13439 Glycosyltransferase Family 4 LQRI_3045 PF00534 Glycosyl transferases group 1 LQRI_3047 PF00534 Glycosyl transferases group 1 LQRI_3049 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LQRI_3049 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LQRI_3049 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LQRI_3053 PF02397 Bacterial sugar transferase LQRI_3054 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LQRI_3057 PF00963 Cohesin domain LQRI_3057 PF00395 S-layer homology domain LQRI_3058 PF00269 Small, acid-soluble spore proteins, alpha/beta type LQRI_3059 PF07486 Cell Wall Hydrolase LQRI_3061 PF00571 CBS domain LQRI_3063 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LQRI_3063 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LQRI_3064 PF00890 FAD binding domain LQRI_3064 PF02910 Fumarate reductase flavoprotein C-term LQRI_3065 PF02445 Quinolinate synthetase A protein LQRI_3071 PF00942 Cellulose binding domain LQRI_3071 PF00759 Glycosyl hydrolase family 9 LQRI_3072 PF03989 DNA gyrase C-terminal domain, beta-propeller LQRI_3072 PF00521 DNA gyrase/topoisomerase IV, subunit A LQRI_3073 PF17762 HTH domain found in ParB protein LQRI_3073 PF02195 ParB-like nuclease domain LQRI_3074 PF02527 rRNA small subunit methyltransferase G LQRI_3075 PF01134 Glucose inhibited division protein A LQRI_3075 PF13932 GidA associated domain LQRI_3076 PF01926 50S ribosome-binding GTPase LQRI_3076 PF12631 MnmE helical domain LQRI_3076 PF10396 GTP-binding protein TrmE N-terminus LQRI_3077 PF14804 Jag N-terminus LQRI_3077 PF01424 R3H domain LQRI_3078 PF02096 60Kd inner membrane protein LQRI_3079 PF01809 Putative membrane protein insertion efficiency factor LQRI_3080 PF00825 Ribonuclease P