locus-tag	class	description
LQRI_0001	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LQRI_0002	COG0592	DNA-directed DNA polymerase activity
LQRI_0004	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LQRI_0006	COG0187	DNA topoisomerase II activity
LQRI_0007	COG1192	Involved in chromosome partitioning
LQRI_0008	COG1475	DNA binding
LQRI_0011	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LQRI_0012	COG2814	Major facilitator Superfamily
LQRI_0014	COG2373	Large extracellular alpha-helical protein
LQRI_0016	COG2720	vancomycin resistance protein
LQRI_0020	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LQRI_0022	COG0674	pyruvate-flavodoxin oxidoreductase activity
LQRI_0023	COG1013	pyruvate-flavodoxin oxidoreductase activity
LQRI_0029	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LQRI_0033	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
LQRI_0034	COG1802	Transcriptional regulator
LQRI_0035	COG2608	mercury ion transmembrane transporter activity
LQRI_0037	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LQRI_0042	COG4717	serine-type aminopeptidase activity
LQRI_0043	COG0791	NLP P60 protein
LQRI_0044	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LQRI_0047	COG2959	enzyme of heme biosynthesis
LQRI_0051	COG1078	dGTPase activity
LQRI_0058	COG3872	metal-dependent enzyme
LQRI_0059	COG2890	protein-(glutamine-N5) methyltransferase activity
LQRI_0061	COG4656	Part of a membrane complex involved in electron transport
LQRI_0062	COG4658	electron transport chain
LQRI_0063	COG4659	FMN binding
LQRI_0064	COG4660	Part of a membrane complex involved in electron transport
LQRI_0065	COG4657	Part of a membrane complex involved in electron transport
LQRI_0066	COG2878	Part of a membrane complex involved in electron transport
LQRI_0072	COG1349	DNA-binding transcription factor activity
LQRI_0073	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LQRI_0074	COG3959	Transketolase, thiamine diphosphate binding domain
LQRI_0075	COG3958	Transketolase
LQRI_0076	COG1063	alcohol dehydrogenase
LQRI_0077	COG1879	ABC-type sugar transport system periplasmic component
LQRI_0078	COG1129	ABC transporter
LQRI_0080	COG0406	alpha-ribazole phosphatase activity
LQRI_0081	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LQRI_0082	COG1164	Oligoendopeptidase f
LQRI_0084	COG3693	PFAM glycoside hydrolase, family 10
LQRI_0085	COG0590	tRNA wobble adenosine to inosine editing
LQRI_0087	COG0662	Cupin 2, conserved barrel domain protein
LQRI_0088	COG3584	3D domain protein
LQRI_0089	COG1609	Transcriptional regulator
LQRI_0094	COG0668	transmembrane transport
LQRI_0096	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LQRI_0098	COG0590	tRNA wobble adenosine to inosine editing
LQRI_0099	COG0028	Belongs to the TPP enzyme family
LQRI_0100	COG0440	acetolactate synthase activity
LQRI_0101	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LQRI_0102	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LQRI_0104	COG1191	sigma factor activity
LQRI_0107	COG1959	2 iron, 2 sulfur cluster binding
LQRI_0108	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LQRI_0110	COG0181	hydroxymethylbilane synthase activity
LQRI_0112	COG0113	porphobilinogen synthase activity
LQRI_0113	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LQRI_0114	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LQRI_0115	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LQRI_0116	COG4208	sulfate ABC transporter
LQRI_0118	COG0175	sulfate reduction
LQRI_0119	COG0175	sulfate reduction
LQRI_0122	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LQRI_0127	COG1595	DNA-templated transcription, initiation
LQRI_0134	COG3534	alpha-L-arabinofuranosidase
LQRI_0136	COG5297	Belongs to the glycosyl hydrolase family 6
LQRI_0138	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LQRI_0140	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LQRI_0143	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LQRI_0144	COG1216	Glycosyl transferase, family 2
LQRI_0145	COG1088	dTDP-glucose 4,6-dehydratase activity
LQRI_0147	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
LQRI_0151	COG3328	transposase activity
LQRI_0153	COG1032	radical SAM domain protein
LQRI_0161	COG1116	anion transmembrane transporter activity
LQRI_0162	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LQRI_0163	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LQRI_0165	COG2954	triphosphatase activity
LQRI_0169	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LQRI_0170	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LQRI_0171	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LQRI_0173	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
LQRI_0173	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
LQRI_0176	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
LQRI_0178	COG3693	PFAM glycoside hydrolase, family 10
LQRI_0181	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LQRI_0182	COG0428	transporter
LQRI_0183	COG0009	L-threonylcarbamoyladenylate synthase
LQRI_0185	COG0698	ribose 5-phosphate isomerase
LQRI_0186	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LQRI_0187	COG2131	deaminase
LQRI_0188	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LQRI_0189	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LQRI_0190	COG0356	it plays a direct role in the translocation of protons across the membrane
LQRI_0191	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LQRI_0192	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LQRI_0193	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LQRI_0194	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LQRI_0195	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LQRI_0196	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LQRI_0197	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LQRI_0201	COG3266	domain, Protein
LQRI_0201	COG2911	Protein conserved in bacteria
LQRI_0201	COG1361	Conserved repeat domain
LQRI_0203	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LQRI_0204	COG2385	sporulation resulting in formation of a cellular spore
LQRI_0206	COG1609	Transcriptional regulator
LQRI_0208	COG4786	Flagellar basal body rod
LQRI_0212	COG0577	efflux transmembrane transporter activity
LQRI_0212	COG1136	(ABC) transporter
LQRI_0213	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LQRI_0214	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LQRI_0215	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LQRI_0216	COG2088	sporulation resulting in formation of a cellular spore
LQRI_0217	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LQRI_0219	COG0193	aminoacyl-tRNA hydrolase activity
LQRI_0220	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LQRI_0221	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LQRI_0223	COG1917	Cupin 2, conserved barrel domain protein
LQRI_0223	COG2207	Transcriptional regulator
LQRI_0224	COG0259	pyridoxamine-phosphate oxidase activity
LQRI_0225	COG0728	peptidoglycan biosynthetic process
LQRI_0229	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LQRI_0230	COG2089	acid synthase
LQRI_0232	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LQRI_0233	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LQRI_0234	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LQRI_0236	COG1181	Belongs to the D-alanine--D-alanine ligase family
LQRI_0237	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LQRI_0243	COG4464	protein tyrosine phosphatase activity
LQRI_0244	COG2002	toxin-antitoxin pair type II binding
LQRI_0245	COG3956	TIGRFAM MazG family protein
LQRI_0247	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LQRI_0251	COG1098	S1 RNA binding domain
LQRI_0253	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LQRI_0270	COG3852	Histidine kinase
LQRI_0273	COG0793	Belongs to the peptidase S41A family
LQRI_0279	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LQRI_0280	COG0849	cell division
LQRI_0281	COG1607	acyl-coa hydrolase
LQRI_0282	COG2244	polysaccharide biosynthetic process
LQRI_0284	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LQRI_0286	COG0110	maltose O-acetyltransferase activity
LQRI_0291	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LQRI_0291	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LQRI_0292	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LQRI_0293	COG0864	Transcriptional regulator
LQRI_0294	COG2337	Toxic component of a toxin-antitoxin (TA) module
LQRI_0297	COG0438	transferase activity, transferring glycosyl groups
LQRI_0298	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LQRI_0299	COG3959	Transketolase, thiamine diphosphate binding domain
LQRI_0300	COG3958	Transketolase
LQRI_0301	COG1131	(ABC) transporter
LQRI_0305	COG3949	Membrane
LQRI_0308	COG0129	dihydroxy-acid dehydratase activity
LQRI_0309	COG0028	Belongs to the TPP enzyme family
LQRI_0312	COG0250	Participates in transcription elongation, termination and antitermination
LQRI_0313	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LQRI_0314	COG0081	regulation of translation
LQRI_0315	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LQRI_0317	COG0085	RNA polymerase activity
LQRI_0318	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LQRI_0319	COG1358	cellular component organization or biogenesis
LQRI_0320	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LQRI_0321	COG0049	tRNA binding
LQRI_0322	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LQRI_0323	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LQRI_0327	COG2720	vancomycin resistance protein
LQRI_0329	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LQRI_0330	COG0322	excinuclease ABC activity
LQRI_0332	COG0544	peptidyl-prolyl cis-trans isomerase activity
LQRI_0333	COG0740	serine-type endopeptidase activity
LQRI_0334	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LQRI_0335	COG0470	DNA polymerase III
LQRI_0335	COG1067	ATP-dependent peptidase activity
LQRI_0336	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LQRI_0337	COG0741	lytic transglycosylase activity
LQRI_0340	COG0613	PHP domain protein
LQRI_0341	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LQRI_0345	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LQRI_0349	COG3263	regulation of cellular component size
LQRI_0351	COG2207	Transcriptional regulator
LQRI_0351	COG3708	Transcriptional regulator
LQRI_0352	COG4447	cellulose binding
LQRI_0352	COG4733	cellulase activity
LQRI_0353	COG5297	Belongs to the glycosyl hydrolase family 6
LQRI_0360	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LQRI_0361	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
LQRI_0363	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LQRI_0373	COG3266	domain, Protein
LQRI_0373	COG1361	Conserved repeat domain
LQRI_0373	COG2911	Protein conserved in bacteria
LQRI_0375	COG5012	cobalamin binding
LQRI_0376	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LQRI_0382	COG1116	anion transmembrane transporter activity
LQRI_0383	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LQRI_0384	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
LQRI_0385	COG0436	Aminotransferase
LQRI_0386	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LQRI_0388	COG0674	pyruvate-flavodoxin oxidoreductase activity
LQRI_0389	COG1013	pyruvate-flavodoxin oxidoreductase activity
LQRI_0391	COG0251	oxidation-reduction process
LQRI_0392	COG0626	cystathionine gamma-synthase activity
LQRI_0393	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
LQRI_0394	COG1151	hydroxylamine reductase activity
LQRI_0396	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LQRI_0397	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
LQRI_0399	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
LQRI_0400	COG1609	Transcriptional regulator
LQRI_0403	COG4124	Belongs to the glycosyl hydrolase 26 family
LQRI_0404	COG4733	cellulase activity
LQRI_0404	COG4447	cellulose binding
LQRI_0406	COG2205	protein histidine kinase activity
LQRI_0408	COG0835	chemotaxis
LQRI_0409	COG2198	Histidine kinase
LQRI_0409	COG0643	Histidine kinase
LQRI_0409	COG0784	Response regulator, receiver
LQRI_0411	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LQRI_0412	COG2201	protein-glutamate methylesterase activity
LQRI_0414	COG1253	flavin adenine dinucleotide binding
LQRI_0416	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
LQRI_0418	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
LQRI_0424	COG0124	histidyl-tRNA synthetase
LQRI_0425	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LQRI_0426	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LQRI_0427	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LQRI_0428	COG0131	Imidazoleglycerol-phosphate dehydratase
LQRI_0429	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LQRI_0430	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LQRI_0431	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LQRI_0432	COG0107	imidazoleglycerol-phosphate synthase activity
LQRI_0435	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
LQRI_0436	COG0459	protein refolding
LQRI_0439	COG3858	chitin binding
LQRI_0441	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LQRI_0442	COG1366	Belongs to the anti-sigma-factor antagonist family
LQRI_0443	COG2172	sigma factor antagonist activity
LQRI_0444	COG1191	sigma factor activity
LQRI_0449	COG0051	transcription antitermination factor activity, RNA binding
LQRI_0450	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LQRI_0451	COG0088	Forms part of the polypeptide exit tunnel
LQRI_0452	COG0089	rRNA binding
LQRI_0453	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LQRI_0454	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LQRI_0455	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LQRI_0456	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LQRI_0457	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LQRI_0458	COG0255	Belongs to the universal ribosomal protein uL29 family
LQRI_0459	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LQRI_0460	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LQRI_0461	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LQRI_0462	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LQRI_0463	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LQRI_0464	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LQRI_0465	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LQRI_0466	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LQRI_0467	COG1841	ribosomal large subunit assembly
LQRI_0468	COG0200	Binds to the 23S rRNA
LQRI_0469	COG0201	protein transport
LQRI_0470	COG0563	adenylate kinase activity
LQRI_0473	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LQRI_0474	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LQRI_0475	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LQRI_0476	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LQRI_0477	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LQRI_0478	COG0202	RNA polymerase activity
LQRI_0479	COG0203	ribosomal protein L17
LQRI_0480	COG1122	ATPase activity
LQRI_0481	COG2813	Specifically methylates the guanine in position
LQRI_0490	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LQRI_0491	COG1122	ATPase activity
LQRI_0492	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LQRI_0493	COG1940	carbohydrate kinase activity
LQRI_0494	COG0101	tRNA pseudouridine synthase activity
LQRI_0495	COG1329	Transcriptional regulator
LQRI_0496	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
LQRI_0497	COG4555	ABC transporter
LQRI_0498	COG1668	transmembrane transport
LQRI_0499	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LQRI_0499	COG4191	Histidine kinase
LQRI_0500	COG3290	protein histidine kinase activity
LQRI_0501	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LQRI_0502	COG0442	prolyl-tRNA aminoacylation
LQRI_0503	COG2340	Cysteine-rich secretory protein family
LQRI_0504	COG2273	Hydrolase Family 16
LQRI_0505	COG3250	beta-galactosidase activity
LQRI_0517	COG4166	transmembrane transport
LQRI_0518	COG4608	Belongs to the ABC transporter superfamily
LQRI_0519	COG0444	Belongs to the ABC transporter superfamily
LQRI_0520	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LQRI_0521	COG0601	transmembrane transport
LQRI_0525	COG1725	Transcriptional regulator
LQRI_0526	COG1131	(ABC) transporter
LQRI_0530	COG1489	DNA binding
LQRI_0531	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LQRI_0532	COG1191	sigma factor activity
LQRI_0539	COG0840	transmembrane signaling receptor activity
LQRI_0540	COG1131	(ABC) transporter
LQRI_0548	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LQRI_0554	COG0693	protein deglycase activity
LQRI_0556	COG1132	(ABC) transporter
LQRI_0558	COG0306	phosphate transporter
LQRI_0562	COG1388	LysM domain
LQRI_0563	COG1376	ErfK ybiS ycfS ynhG family protein
LQRI_0569	COG5520	Belongs to the glycosyl hydrolase 30 family
LQRI_0571	COG0409	Hydrogenase expression formation protein
LQRI_0573	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
LQRI_0577	COG3261	NADH dehydrogenase
LQRI_0577	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
LQRI_0579	COG3260	NADH ubiquinone oxidoreductase 20
LQRI_0581	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LQRI_0581	COG2111	Na H antiporter
LQRI_0583	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LQRI_0584	COG0372	Belongs to the citrate synthase family
LQRI_0585	COG0076	glutamate decarboxylase activity
LQRI_0586	COG0835	chemotaxis
LQRI_0587	COG0840	transmembrane signaling receptor activity
LQRI_0592	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LQRI_0593	COG0840	transmembrane signaling receptor activity
LQRI_0600	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LQRI_0604	COG0768	penicillin binding
LQRI_0605	COG2003	Belongs to the UPF0758 family
LQRI_0608	COG3328	transposase activity
LQRI_0617	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
LQRI_0620	COG3458	cephalosporin-C deacetylase activity
LQRI_0625	COG1131	(ABC) transporter
LQRI_0627	COG5002	protein histidine kinase activity
LQRI_0628	COG0745	RESPONSE REGULATOR receiver
LQRI_0632	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LQRI_0633	COG0561	phosphatase activity
LQRI_0634	COG2304	oxidoreductase activity
LQRI_0636	COG2911	Protein conserved in bacteria
LQRI_0637	COG1361	Conserved repeat domain
LQRI_0637	COG3266	domain, Protein
LQRI_0637	COG2911	Protein conserved in bacteria
LQRI_0638	COG1361	Conserved repeat domain
LQRI_0639	COG1361	Conserved repeat domain
LQRI_0643	COG0116	Belongs to the methyltransferase superfamily
LQRI_0645	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LQRI_0649	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
LQRI_0652	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LQRI_0654	COG0463	Glycosyl transferase, family 2
LQRI_0657	COG0463	Glycosyl transferase, family 2
LQRI_0659	COG1216	Glycosyl transferase, family 2
LQRI_0660	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LQRI_0661	COG0436	Aminotransferase
LQRI_0662	COG1316	TRANSCRIPTIONal
LQRI_0665	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LQRI_0666	COG0720	synthase
LQRI_0667	COG0602	queuosine metabolic process
LQRI_0668	COG1573	uracil-dna glycosylase
LQRI_0669	COG1573	uracil-dna glycosylase
LQRI_0672	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LQRI_0676	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
LQRI_0677	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LQRI_0680	COG1482	cell wall glycoprotein biosynthetic process
LQRI_0682	COG2703	oxygen carrier activity
LQRI_0683	COG1773	rubredoxin
LQRI_0683	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LQRI_0686	COG1361	Conserved repeat domain
LQRI_0688	COG0318	PFAM AMP-dependent synthetase and ligase
LQRI_0690	COG1051	belongs to the nudix hydrolase family
LQRI_0690	COG1056	cytidyltransferase-related domain
LQRI_0693	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LQRI_0696	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LQRI_0697	COG2267	carboxylic ester hydrolase activity
LQRI_0700	COG1404	Belongs to the peptidase S8 family
LQRI_0704	COG2755	lipolytic protein G-D-S-L family
LQRI_0704	COG3401	FG-GAP repeat protein
LQRI_0707	COG2207	Transcriptional regulator
LQRI_0707	COG3708	Transcriptional regulator
LQRI_0710	COG1132	(ABC) transporter
LQRI_0711	COG1132	(ABC) transporter
LQRI_0712	COG2195	Cleaves the N-terminal amino acid of tripeptides
LQRI_0715	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
LQRI_0719	COG0840	transmembrane signaling receptor activity
LQRI_0720	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LQRI_0721	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LQRI_0722	COG1802	Transcriptional regulator
LQRI_0723	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
LQRI_0723	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LQRI_0724	COG1187	pseudouridine synthase activity
LQRI_0729	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LQRI_0730	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LQRI_0731	COG1597	lipid kinase activity
LQRI_0733	COG1136	(ABC) transporter
LQRI_0735	COG1136	(ABC) transporter
LQRI_0735	COG0577	efflux transmembrane transporter activity
LQRI_0738	COG2323	membrane
LQRI_0742	COG1686	Belongs to the peptidase S11 family
LQRI_0744	COG0569	domain protein
LQRI_0751	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LQRI_0760	COG0628	permease
LQRI_0761	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LQRI_0779	COG3328	transposase activity
LQRI_0796	COG3328	transposase activity
LQRI_0801	COG3328	transposase activity
LQRI_0802	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LQRI_0802	COG0723	plastoquinol--plastocyanin reductase activity
LQRI_0806	COG1126	abc transporter atp-binding protein
LQRI_0815	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LQRI_0823	COG1595	DNA-templated transcription, initiation
LQRI_0827	COG1028	Short-chain dehydrogenase reductase Sdr
LQRI_0834	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LQRI_0835	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
LQRI_0837	COG0628	permease
LQRI_0840	COG1714	RDD family
LQRI_0841	COG0616	signal peptide processing
LQRI_0842	COG1971	Probably functions as a manganese efflux pump
LQRI_0845	COG1131	(ABC) transporter
LQRI_0848	COG0133	tryptophan synthase activity
LQRI_0849	COG0159	tryptophan synthase activity
LQRI_0850	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LQRI_0851	COG5002	protein histidine kinase activity
LQRI_0852	COG0745	RESPONSE REGULATOR receiver
LQRI_0855	COG5337	Spore coat protein CotH
LQRI_0856	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
LQRI_0858	COG1321	iron dependent repressor
LQRI_0862	COG4447	cellulose binding
LQRI_0863	COG1442	glycosyl transferase family 8
LQRI_0864	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LQRI_0865	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LQRI_0866	COG0745	RESPONSE REGULATOR receiver
LQRI_0867	COG5002	protein histidine kinase activity
LQRI_0868	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LQRI_0869	COG2267	carboxylic ester hydrolase activity
LQRI_0870	COG0617	tRNA 3'-terminal CCA addition
LQRI_0871	COG4496	protein, YerC YecD
LQRI_0874	COG0653	protein targeting
LQRI_0875	COG0285	dihydrofolate synthase activity
LQRI_0877	COG1752	Esterase of the alpha-beta hydrolase superfamily
LQRI_0879	COG2201	protein-glutamate methylesterase activity
LQRI_0880	COG0673	inositol 2-dehydrogenase activity
LQRI_0881	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LQRI_0881	COG2199	diguanylate cyclase activity
LQRI_0882	COG4492	Belongs to the UPF0735 family
LQRI_0883	COG0460	homoserine dehydrogenase
LQRI_0884	COG0527	aspartate kinase activity
LQRI_0894	COG0537	adenosine 5'-monophosphoramidase activity
LQRI_0895	COG1361	Conserved repeat domain
LQRI_0897	COG4464	protein tyrosine phosphatase activity
LQRI_0901	COG0489	protein tyrosine kinase activity
LQRI_0909	COG1216	Glycosyl transferase, family 2
LQRI_0912	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LQRI_0914	COG0629	single-stranded DNA binding
LQRI_0915	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LQRI_0916	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LQRI_0918	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LQRI_0918	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
LQRI_0919	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LQRI_0920	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LQRI_0921	COG1490	D-aminoacyl-tRNA deacylase activity
LQRI_0922	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LQRI_0923	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LQRI_0933	COG0124	histidyl-tRNA synthetase
LQRI_0934	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LQRI_0940	COG0481	GTPase activity
LQRI_0941	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LQRI_0942	COG1420	regulation of RNA biosynthetic process
LQRI_0943	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LQRI_0944	COG0443	Heat shock 70 kDa protein
LQRI_0945	COG0484	heat shock protein binding
LQRI_0946	COG2264	protein methyltransferase activity
LQRI_0947	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LQRI_0948	COG2201	protein-glutamate methylesterase activity
LQRI_0950	COG1561	YicC-like family, N-terminal region
LQRI_0951	COG2052	Domain of unknown function (DUF370)
LQRI_0952	COG0194	GDP metabolic process
LQRI_0953	COG1758	RNA polymerase activity
LQRI_0954	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LQRI_0955	COG0423	glycine-tRNA ligase activity
LQRI_0956	COG3290	protein histidine kinase activity
LQRI_0959	COG0535	radical SAM domain protein
LQRI_0960	COG0574	Belongs to the PEP-utilizing enzyme family
LQRI_0960	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LQRI_0961	COG3693	PFAM glycoside hydrolase, family 10
LQRI_0963	COG0662	Cupin 2, conserved barrel domain protein
LQRI_0964	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LQRI_0966	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LQRI_0967	COG1323	Belongs to the UPF0348 family
LQRI_0971	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LQRI_0973	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LQRI_0977	COG3635	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
LQRI_0981	COG0745	RESPONSE REGULATOR receiver
LQRI_0982	COG5002	protein histidine kinase activity
LQRI_0982	COG3850	Histidine kinase
LQRI_0983	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LQRI_0984	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LQRI_0984	COG2199	diguanylate cyclase activity
LQRI_0985	COG0297	glycogen (starch) synthase activity
LQRI_0986	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LQRI_0989	COG2261	transglycosylase associated protein
LQRI_0990	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LQRI_0991	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LQRI_0992	COG0742	ribosomal rna small subunit methyltransferase
LQRI_0993	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LQRI_0995	COG3314	Sporulation integral membrane protein YlbJ
LQRI_0996	COG2755	lipolytic protein G-D-S-L family
LQRI_0997	COG1191	sigma factor activity
LQRI_0998	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_1002	COG2197	response regulator
LQRI_1003	COG0840	transmembrane signaling receptor activity
LQRI_1004	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LQRI_1008	COG0205	6-phosphofructokinase activity
LQRI_1013	COG1472	Belongs to the glycosyl hydrolase 3 family
LQRI_1019	COG2252	PERMEase
LQRI_1020	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LQRI_1021	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LQRI_1022	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LQRI_1023	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LQRI_1024	COG0138	bifunctional purine biosynthesis protein purh
LQRI_1025	COG0151	Belongs to the GarS family
LQRI_1026	COG1216	Glycosyl transferase, family 2
LQRI_1028	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LQRI_1029	COG1713	HD superfamily hydrolase involved in NAD metabolism
LQRI_1031	COG0799	negative regulation of ribosome biogenesis
LQRI_1032	COG0495	leucyl-tRNA aminoacylation
LQRI_1034	COG0840	transmembrane signaling receptor activity
LQRI_1036	COG1022	Amp-dependent synthetase and ligase
LQRI_1037	COG1686	Belongs to the peptidase S11 family
LQRI_1038	COG1555	photosystem II stabilization
LQRI_1038	COG1596	polysaccharide export
LQRI_1041	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LQRI_1043	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LQRI_1044	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LQRI_1045	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LQRI_1046	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LQRI_1047	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LQRI_1048	COG3459	Glycosyltransferase 36 associated
LQRI_1051	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LQRI_1052	COG0542	response to heat
LQRI_1053	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LQRI_1054	COG0730	response to heat
LQRI_1058	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
LQRI_1064	COG2766	serine protein kinase
LQRI_1065	COG2718	Belongs to the UPF0229 family
LQRI_1066	COG2719	SpoVR family
LQRI_1069	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
LQRI_1070	COG0402	S-adenosylhomocysteine deaminase activity
LQRI_1078	COG3328	transposase activity
LQRI_1080	COG0546	phosphoglycolate phosphatase activity
LQRI_1082	COG4555	ABC transporter
LQRI_1085	COG0657	acetylesterase activity
LQRI_1088	COG0714	Associated with various cellular activities
LQRI_1090	COG1305	Transglutaminase-like
LQRI_1094	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LQRI_1095	COG1406	Chemotaxis phosphatase CheX
LQRI_1102	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
LQRI_1105	COG2078	PFAM AMMECR1 domain protein
LQRI_1105	COG3885	ferrous iron binding
LQRI_1107	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
LQRI_1109	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
LQRI_1110	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LQRI_1111	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LQRI_1112	COG0640	Transcriptional regulator
LQRI_1113	COG0798	PFAM Bile acid sodium symporter
LQRI_1119	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LQRI_1121	COG1459	type II secretion system
LQRI_1129	COG0740	serine-type endopeptidase activity
LQRI_1131	COG1674	ftsk spoiiie
LQRI_1133	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LQRI_1135	COG1418	mRNA catabolic process
LQRI_1136	COG1692	metallophosphoesterase
LQRI_1137	COG2359	stage V sporulation protein S
LQRI_1141	COG0438	transferase activity, transferring glycosyl groups
LQRI_1143	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LQRI_1147	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LQRI_1155	COG1702	phosphate starvation-inducible protein PhoH
LQRI_1156	COG1480	7TM receptor with intracellular HD hydrolase
LQRI_1157	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LQRI_1158	COG0295	cytidine deaminase activity
LQRI_1159	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LQRI_1161	COG1381	Involved in DNA repair and RecF pathway recombination
LQRI_1163	COG1104	cysteine desulfurase activity
LQRI_1164	COG0301	tRNA thio-modification
LQRI_1165	COG2720	vancomycin resistance protein
LQRI_1169	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LQRI_1170	COG1983	PspC domain protein
LQRI_1171	COG1305	Transglutaminase-like
LQRI_1173	COG0714	Associated with various cellular activities
LQRI_1174	COG0039	L-malate dehydrogenase activity
LQRI_1175	COG1546	Belongs to the CinA family
LQRI_1175	COG1058	Belongs to the CinA family
LQRI_1176	COG0728	peptidoglycan biosynthetic process
LQRI_1177	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LQRI_1179	COG0457	Tetratricopeptide repeat
LQRI_1179	COG0705	Rhomboid family
LQRI_1186	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LQRI_1187	COG1466	dna polymerase III delta subunit
LQRI_1188	COG0268	Binds directly to 16S ribosomal RNA
LQRI_1192	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LQRI_1195	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LQRI_1196	COG0154	amidase activity
LQRI_1197	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LQRI_1199	COG0280	phosphate acetyltransferase
LQRI_1200	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LQRI_1202	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LQRI_1204	COG1160	GTP binding
LQRI_1206	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LQRI_1207	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LQRI_1209	COG1175	transmembrane transport
LQRI_1210	COG0395	ABC-type sugar transport system, permease component
LQRI_1211	COG2247	cell wall binding repeat
LQRI_1211	COG0860	N-Acetylmuramoyl-L-alanine amidase
LQRI_1214	COG1193	negative regulation of DNA recombination
LQRI_1215	COG0628	permease
LQRI_1217	COG0768	penicillin binding
LQRI_1218	COG0826	peptidase U32
LQRI_1219	COG4122	O-methyltransferase activity
LQRI_1220	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LQRI_1221	COG1217	gtp-binding protein TYPA
LQRI_1222	COG0052	Belongs to the universal ribosomal protein uS2 family
LQRI_1223	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LQRI_1224	COG0528	UMP kinase activity
LQRI_1225	COG0233	cytoplasmic translational termination
LQRI_1227	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LQRI_1228	COG0575	Belongs to the CDS family
LQRI_1229	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
LQRI_1231	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
LQRI_1234	COG0779	Required for maturation of 30S ribosomal subunits
LQRI_1235	COG0195	Participates in both transcription termination and antitermination
LQRI_1236	COG2740	Nucleic-acid-binding protein implicated in transcription termination
LQRI_1238	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LQRI_1239	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LQRI_1240	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LQRI_1241	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LQRI_1242	COG0196	riboflavin kinase activity
LQRI_1244	COG0612	Peptidase, M16
LQRI_1245	COG0612	Peptidase, M16
LQRI_1246	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LQRI_1248	COG0772	Belongs to the SEDS family
LQRI_1249	COG2001	Belongs to the MraZ family
LQRI_1250	COG0275	rRNA processing
LQRI_1252	COG0768	penicillin binding
LQRI_1253	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LQRI_1254	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LQRI_1255	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LQRI_1256	COG0772	Belongs to the SEDS family
LQRI_1257	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LQRI_1258	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LQRI_1261	COG3328	transposase activity
LQRI_1265	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
LQRI_1267	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
LQRI_1268	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LQRI_1269	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LQRI_1270	COG2247	cell wall binding repeat
LQRI_1270	COG2385	sporulation resulting in formation of a cellular spore
LQRI_1271	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LQRI_1272	COG0343	queuine tRNA-ribosyltransferase activity
LQRI_1273	COG1862	Preprotein translocase
LQRI_1276	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
LQRI_1278	COG0540	Belongs to the ATCase OTCase family
LQRI_1279	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LQRI_1282	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LQRI_1283	COG0543	2 iron, 2 sulfur cluster binding
LQRI_1284	COG0167	dihydroorotate dehydrogenase activity
LQRI_1285	COG0588	phosphoglycerate mutase activity
LQRI_1289	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LQRI_1290	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LQRI_1293	COG2030	dehydratase
LQRI_1294	COG0416	fatty acid biosynthetic process
LQRI_1295	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LQRI_1296	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LQRI_1297	COG1028	Short-chain dehydrogenase reductase Sdr
LQRI_1298	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LQRI_1299	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LQRI_1300	COG0571	ribonuclease III activity
LQRI_1302	COG2359	stage V sporulation protein S
LQRI_1305	COG0552	protein localization to endoplasmic reticulum
LQRI_1309	COG1748	Saccharopine dehydrogenase
LQRI_1316	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LQRI_1321	COG1496	oxidoreductase activity
LQRI_1323	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LQRI_1324	COG0564	pseudouridine synthase activity
LQRI_1326	COG1418	mRNA catabolic process
LQRI_1327	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LQRI_1328	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LQRI_1329	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LQRI_1330	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LQRI_1331	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
LQRI_1334	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LQRI_1336	COG0358	DNA primase activity
LQRI_1337	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LQRI_1340	COG2384	SAM-dependent methyltransferase
LQRI_1341	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LQRI_1342	COG3437	response regulator, receiver
LQRI_1343	COG1595	DNA-templated transcription, initiation
LQRI_1347	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LQRI_1347	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LQRI_1348	COG0237	dephospho-CoA kinase activity
LQRI_1351	COG0697	spore germination
LQRI_1352	COG3706	GGDEF domain
LQRI_1354	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
LQRI_1355	COG0835	chemotaxis
LQRI_1356	COG0012	GTP binding
LQRI_1359	COG0512	Glutamine amidotransferase of anthranilate synthase
LQRI_1359	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LQRI_1360	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LQRI_1361	COG0134	indole-3-glycerol-phosphate synthase activity
LQRI_1362	COG0135	phosphoribosylanthranilate isomerase activity
LQRI_1373	COG1316	TRANSCRIPTIONal
LQRI_1374	COG1592	Rubrerythrin
LQRI_1376	COG4864	UPF0365 protein
LQRI_1377	COG1030	water channel activity
LQRI_1378	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LQRI_1379	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
LQRI_1380	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LQRI_1381	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LQRI_1382	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LQRI_1384	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LQRI_1385	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LQRI_1386	COG0006	proline dipeptidase activity
LQRI_1387	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LQRI_1390	COG3854	ATPases associated with a variety of cellular activities
LQRI_1398	COG1302	Protein conserved in bacteria
LQRI_1401	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LQRI_1402	COG1570	exodeoxyribonuclease VII activity
LQRI_1403	COG1722	exodeoxyribonuclease VII activity
LQRI_1405	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
LQRI_1407	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LQRI_1408	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
LQRI_1410	COG3291	Pkd domain containing protein
LQRI_1415	COG1131	(ABC) transporter
LQRI_1417	COG3706	GGDEF domain
LQRI_1418	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LQRI_1419	COG1438	arginine binding
LQRI_1420	COG0497	DNA recombination
LQRI_1421	COG0750	zinc metalloprotease
LQRI_1422	COG0745	RESPONSE REGULATOR receiver
LQRI_1423	COG2201	protein-glutamate methylesterase activity
LQRI_1424	COG0643	Histidine kinase
LQRI_1424	COG2198	Histidine kinase
LQRI_1425	COG0835	chemotaxis
LQRI_1427	COG2201	protein-glutamate methylesterase activity
LQRI_1429	COG0745	RESPONSE REGULATOR receiver
LQRI_1431	COG0564	pseudouridine synthase activity
LQRI_1434	COG3328	transposase activity
LQRI_1435	COG5002	protein histidine kinase activity
LQRI_1436	COG0745	RESPONSE REGULATOR receiver
LQRI_1438	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
LQRI_1438	COG2755	lipolytic protein G-D-S-L family
LQRI_1439	COG0366	Alpha amylase catalytic
LQRI_1440	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
LQRI_1442	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LQRI_1443	COG1799	cell septum assembly
LQRI_1445	COG2302	S4 RNA-binding domain
LQRI_1446	COG3599	regulation of cell shape
LQRI_1448	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LQRI_1451	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LQRI_1453	COG0840	transmembrane signaling receptor activity
LQRI_1455	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LQRI_1456	COG2340	Cysteine-rich secretory protein family
LQRI_1458	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LQRI_1459	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LQRI_1460	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LQRI_1461	COG1923	regulation of RNA biosynthetic process
LQRI_1462	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LQRI_1464	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
LQRI_1465	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LQRI_1466	COG0228	four-way junction DNA binding
LQRI_1467	COG1837	Belongs to the UPF0109 family
LQRI_1468	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LQRI_1469	COG0336	Belongs to the RNA methyltransferase TrmD family
LQRI_1470	COG0335	large ribosomal subunit rRNA binding
LQRI_1474	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LQRI_1477	COG0792	nuclease activity
LQRI_1478	COG2003	Belongs to the UPF0758 family
LQRI_1485	COG3842	ATPase activity
LQRI_1486	COG1176	ABC-type spermidine putrescine transport system, permease component I
LQRI_1490	COG4733	cellulase activity
LQRI_1491	COG0793	Belongs to the peptidase S41A family
LQRI_1491	COG3409	Peptidoglycan-binding domain 1 protein
LQRI_1492	COG0534	Mate efflux family protein
LQRI_1494	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LQRI_1495	COG2188	Transcriptional regulator
LQRI_1501	COG1361	Conserved repeat domain
LQRI_1501	COG2911	Protein conserved in bacteria
LQRI_1501	COG3266	domain, Protein
LQRI_1502	COG1361	Conserved repeat domain
LQRI_1502	COG3266	domain, Protein
LQRI_1502	COG2911	Protein conserved in bacteria
LQRI_1505	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LQRI_1508	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LQRI_1509	COG4974	Belongs to the 'phage' integrase family
LQRI_1511	COG1362	aminopeptidase activity
LQRI_1512	COG2199	diguanylate cyclase activity
LQRI_1512	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LQRI_1513	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LQRI_1514	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LQRI_1515	COG0482	sulfurtransferase activity
LQRI_1516	COG0822	iron-sulfur transferase activity
LQRI_1518	COG1959	2 iron, 2 sulfur cluster binding
LQRI_1521	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LQRI_1522	COG0105	UTP biosynthetic process
LQRI_1523	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
LQRI_1524	COG0539	negative regulation of cytoplasmic translation
LQRI_1524	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LQRI_1525	COG0204	Acyl-transferase
LQRI_1530	COG2081	HI0933 family
LQRI_1531	COG0406	alpha-ribazole phosphatase activity
LQRI_1532	COG1737	Transcriptional regulator
LQRI_1538	COG0511	ligase activity, forming carbon-carbon bonds
LQRI_1540	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LQRI_1542	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
LQRI_1543	COG0010	Belongs to the arginase family
LQRI_1544	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LQRI_1545	COG1187	pseudouridine synthase activity
LQRI_1546	COG3874	Sporulation protein YtfJ
LQRI_1549	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LQRI_1550	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
LQRI_1551	COG0180	Tryptophanyl-tRNA synthetase
LQRI_1552	COG1994	Peptidase M50
LQRI_1553	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LQRI_1553	COG3620	sequence-specific DNA binding
LQRI_1553	COG0617	tRNA 3'-terminal CCA addition
LQRI_1556	COG0517	IMP dehydrogenase activity
LQRI_1556	COG0516	GMP reductase activity
LQRI_1558	COG1686	Belongs to the peptidase S11 family
LQRI_1560	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LQRI_1561	COG4974	Belongs to the 'phage' integrase family
LQRI_1562	COG1300	Membrane
LQRI_1564	COG0328	RNA-DNA hybrid ribonuclease activity
LQRI_1565	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LQRI_1570	COG0697	spore germination
LQRI_1571	COG0330	HflC and HflK could
LQRI_1573	COG3583	domain protein
LQRI_1573	COG3584	3D domain protein
LQRI_1575	COG2273	Hydrolase Family 16
LQRI_1576	COG4447	cellulose binding
LQRI_1582	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LQRI_1585	COG1942	4-Oxalocrotonate Tautomerase
LQRI_1590	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LQRI_1595	COG3949	Membrane
LQRI_1599	COG2273	Hydrolase Family 16
LQRI_1600	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LQRI_1604	COG0631	protein serine/threonine phosphatase activity
LQRI_1605	COG0515	serine threonine protein kinase
LQRI_1605	COG2815	serine threonine protein kinase
LQRI_1615	COG5297	Belongs to the glycosyl hydrolase family 6
LQRI_1617	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LQRI_1618	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
LQRI_1619	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
LQRI_1620	COG1321	iron dependent repressor
LQRI_1622	COG1918	ferrous iron import across plasma membrane
LQRI_1622	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
LQRI_1624	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LQRI_1628	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LQRI_1630	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
LQRI_1631	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LQRI_1636	COG0791	NLP P60 protein
LQRI_1639	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
LQRI_1640	COG0352	thiamine-phosphate diphosphorylase activity
LQRI_1642	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LQRI_1643	COG2022	thiamine diphosphate biosynthetic process
LQRI_1644	COG2104	thiamine diphosphate biosynthetic process
LQRI_1644	COG2022	thiamine diphosphate biosynthetic process
LQRI_1645	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LQRI_1650	COG2226	methyltransferase
LQRI_1659	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LQRI_1661	COG1201	RNA secondary structure unwinding
LQRI_1673	COG2204	response regulator
LQRI_1675	COG1293	RNA-binding protein homologous to eukaryotic snRNP
LQRI_1676	COG0436	Aminotransferase
LQRI_1677	COG0778	Nitroreductase
LQRI_1680	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LQRI_1681	COG1162	GTPase activity
LQRI_1682	COG2815	serine threonine protein kinase
LQRI_1682	COG0515	serine threonine protein kinase
LQRI_1683	COG0631	protein serine/threonine phosphatase activity
LQRI_1684	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LQRI_1685	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LQRI_1685	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LQRI_1686	COG2738	Putative neutral zinc metallopeptidase
LQRI_1688	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LQRI_1689	COG0242	peptide deformylase activity
LQRI_1690	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LQRI_1695	COG1477	protein flavinylation
LQRI_1696	COG1252	NADH dehydrogenase
LQRI_1699	COG0726	polysaccharide deacetylase
LQRI_1700	COG0367	asparagine synthase
LQRI_1701	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LQRI_1702	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LQRI_1703	COG0583	DNA-binding transcription factor activity
LQRI_1705	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LQRI_1706	COG0326	Molecular chaperone. Has ATPase activity
LQRI_1707	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LQRI_1708	COG1121	(ABC) transporter
LQRI_1709	COG0803	Belongs to the bacterial solute-binding protein 9 family
LQRI_1710	COG0735	belongs to the Fur family
LQRI_1712	COG0631	protein serine/threonine phosphatase activity
LQRI_1713	COG5297	Belongs to the glycosyl hydrolase family 6
LQRI_1716	COG1136	(ABC) transporter
LQRI_1716	COG0577	efflux transmembrane transporter activity
LQRI_1717	COG1136	(ABC) transporter
LQRI_1718	COG5002	protein histidine kinase activity
LQRI_1718	COG3850	Histidine kinase
LQRI_1719	COG0745	RESPONSE REGULATOR receiver
LQRI_1720	COG4447	cellulose binding
LQRI_1720	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
LQRI_1722	COG2274	protein secretion by the type I secretion system
LQRI_1731	COG5002	protein histidine kinase activity
LQRI_1732	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
LQRI_1735	COG2176	DNA-directed DNA polymerase activity
LQRI_1736	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LQRI_1738	COG2843	Capsule synthesis protein
LQRI_1745	COG1191	sigma factor activity
LQRI_1747	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
LQRI_1748	COG1776	CheC inhibitor of MCP methylation
LQRI_1749	COG0835	chemotaxis
LQRI_1750	COG2198	Histidine kinase
LQRI_1750	COG0643	Histidine kinase
LQRI_1751	COG2201	protein-glutamate methylesterase activity
LQRI_1754	COG1419	protein localization to endoplasmic reticulum
LQRI_1755	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LQRI_1756	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LQRI_1757	COG1684	flagellar biosynthetic protein fliR
LQRI_1758	COG1987	bacterial-type flagellum assembly
LQRI_1759	COG1338	Plays a role in the flagellum-specific transport system
LQRI_1761	COG2201	protein-glutamate methylesterase activity
LQRI_1762	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LQRI_1762	COG1776	CheC inhibitor of MCP methylation
LQRI_1763	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LQRI_1765	COG1582	Flagellar protein (FlbD)
LQRI_1768	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
LQRI_1772	COG1157	protein secretion by the type III secretion system
LQRI_1773	COG1317	bacterial-type flagellum organization
LQRI_1774	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LQRI_1776	COG1677	Flagellar hook-basal body complex protein FliE
LQRI_1777	COG1558	bacterial-type flagellum-dependent cell motility
LQRI_1778	COG1815	bacterial-type flagellum-dependent cell motility
LQRI_1779	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
LQRI_1780	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LQRI_1781	COG0758	DNA mediated transformation
LQRI_1781	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LQRI_1782	COG0708	Exodeoxyribonuclease III
LQRI_1783	COG3304	Inner membrane component domain
LQRI_1785	COG0606	chelatase, subunit chli
LQRI_1790	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LQRI_1791	COG1873	PFAM PRC-barrel domain
LQRI_1792	COG1191	sigma factor activity
LQRI_1793	COG1191	sigma factor activity
LQRI_1795	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LQRI_1796	COG0849	cell division
LQRI_1797	COG3856	small basic protein
LQRI_1798	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LQRI_1799	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LQRI_1800	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LQRI_1801	COG3442	glutamine amidotransferase
LQRI_1802	COG3328	transposase activity
LQRI_1803	COG4447	cellulose binding
LQRI_1810	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
LQRI_1818	COG1454	alcohol dehydrogenase
LQRI_1818	COG1012	belongs to the aldehyde dehydrogenase family
LQRI_1819	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
LQRI_1820	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LQRI_1822	COG0612	Peptidase, M16
LQRI_1823	COG1185	polyribonucleotide nucleotidyltransferase activity
LQRI_1824	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LQRI_1827	COG3546	catalase activity
LQRI_1829	COG2273	Hydrolase Family 16
LQRI_1829	COG5297	Belongs to the glycosyl hydrolase family 6
LQRI_1831	COG2848	UPF0210 protein
LQRI_1832	COG3830	Belongs to the UPF0237 family
LQRI_1837	COG4447	cellulose binding
LQRI_1838	COG1191	sigma factor activity
LQRI_1843	COG0393	Putative heavy-metal-binding
LQRI_1844	COG1132	(ABC) transporter
LQRI_1845	COG1132	(ABC) transporter
LQRI_1846	COG1869	D-ribose catabolic process
LQRI_1849	COG1172	Belongs to the binding-protein-dependent transport system permease family
LQRI_1850	COG1129	ABC transporter
LQRI_1851	COG1940	carbohydrate kinase activity
LQRI_1852	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LQRI_1853	COG1063	alcohol dehydrogenase
LQRI_1856	COG0577	efflux transmembrane transporter activity
LQRI_1856	COG1136	(ABC) transporter
LQRI_1866	COG0519	Catalyzes the synthesis of GMP from XMP
LQRI_1867	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LQRI_1870	COG3328	transposase activity
LQRI_1872	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
LQRI_1873	COG1691	(AIR) carboxylase
LQRI_1874	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LQRI_1877	COG3620	sequence-specific DNA binding
LQRI_1878	COG0436	Aminotransferase
LQRI_1879	COG1522	sequence-specific DNA binding
LQRI_1882	COG3118	belongs to the thioredoxin family
LQRI_1884	COG3328	transposase activity
LQRI_1889	COG3328	transposase activity
LQRI_1890	COG1379	DNA repair
LQRI_1891	COG1924	4 iron, 4 sulfur cluster binding
LQRI_1894	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LQRI_1895	COG0681	Belongs to the peptidase S26 family
LQRI_1896	COG0191	fructose-bisphosphate aldolase activity
LQRI_1897	COG0205	6-phosphofructokinase activity
LQRI_1899	COG0039	L-malate dehydrogenase activity
LQRI_1900	COG0281	malic enzyme
LQRI_1905	COG2205	protein histidine kinase activity
LQRI_1905	COG0784	Response regulator, receiver
LQRI_1912	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LQRI_1914	COG2226	methyltransferase
LQRI_1917	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LQRI_1918	COG1361	Conserved repeat domain
LQRI_1918	COG2911	Protein conserved in bacteria
LQRI_1918	COG3266	domain, Protein
LQRI_1922	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LQRI_1922	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LQRI_1923	COG0525	valine-tRNA ligase activity
LQRI_1925	COG1472	Belongs to the glycosyl hydrolase 3 family
LQRI_1929	COG1376	ErfK ybiS ycfS ynhG family protein
LQRI_1931	COG2133	pyrroloquinoline quinone binding
LQRI_1931	COG5183	chlorophyll binding
LQRI_1932	COG1191	sigma factor activity
LQRI_1935	COG0542	response to heat
LQRI_1938	COG3584	3D domain protein
LQRI_1938	COG3583	domain protein
LQRI_1939	COG0556	nucleotide-excision repair
LQRI_1942	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LQRI_1943	COG0187	DNA topoisomerase II activity
LQRI_1947	COG2966	Psort location CytoplasmicMembrane, score
LQRI_1948	COG2340	Cysteine-rich secretory protein family
LQRI_1949	COG0534	Mate efflux family protein
LQRI_1950	COG0840	transmembrane signaling receptor activity
LQRI_1961	COG1331	Highly conserved protein containing a thioredoxin domain
LQRI_1962	COG0460	homoserine dehydrogenase
LQRI_1963	COG1199	ATP-dependent helicase activity
LQRI_1964	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LQRI_1965	COG0784	Response regulator, receiver
LQRI_1965	COG2205	protein histidine kinase activity
LQRI_1966	COG2205	protein histidine kinase activity
LQRI_1968	COG0538	isocitrate dehydrogenase activity
LQRI_1970	COG0667	Aldo Keto reductase
LQRI_1971	COG0297	glycogen (starch) synthase activity
LQRI_1974	COG0564	pseudouridine synthase activity
LQRI_1975	COG0116	Belongs to the methyltransferase superfamily
LQRI_1975	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LQRI_1977	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LQRI_1978	COG3459	Glycosyltransferase 36 associated
LQRI_1979	COG4447	cellulose binding
LQRI_1979	COG4733	cellulase activity
LQRI_1980	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LQRI_1980	COG2199	diguanylate cyclase activity
LQRI_1981	COG1686	Belongs to the peptidase S11 family
LQRI_1982	COG4733	cellulase activity
LQRI_1982	COG4447	cellulose binding
LQRI_1984	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LQRI_1985	COG1191	sigma factor activity
LQRI_1986	COG4447	cellulose binding
LQRI_1987	COG0840	transmembrane signaling receptor activity
LQRI_1988	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LQRI_1991	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LQRI_1993	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LQRI_1995	COG4447	cellulose binding
LQRI_1997	COG1609	Transcriptional regulator
LQRI_2000	COG0714	Associated with various cellular activities
LQRI_2003	COG1690	Belongs to the RtcB family
LQRI_2006	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LQRI_2007	COG3401	FG-GAP repeat protein
LQRI_2009	COG2217	Heavy metal translocating P-type atpase
LQRI_2010	COG3409	Peptidoglycan-binding domain 1 protein
LQRI_2010	COG3773	Cell wall hydrolase
LQRI_2014	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LQRI_2015	COG0667	Aldo Keto reductase
LQRI_2017	COG0318	PFAM AMP-dependent synthetase and ligase
LQRI_2018	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LQRI_2020	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LQRI_2030	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LQRI_2033	COG3328	transposase activity
LQRI_2041	COG1408	metallophosphoesterase
LQRI_2042	COG0166	Belongs to the GPI family
LQRI_2044	COG0072	phenylalanine-tRNA ligase activity
LQRI_2044	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LQRI_2045	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LQRI_2047	COG2723	6-phospho-beta-galactosidase activity
LQRI_2049	COG2273	Hydrolase Family 16
LQRI_2050	COG1609	Transcriptional regulator
LQRI_2051	COG1215	transferase activity, transferring glycosyl groups
LQRI_2053	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
LQRI_2053	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LQRI_2061	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LQRI_2062	COG0493	'glutamate synthase
LQRI_2062	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LQRI_2063	COG0069	glutamate synthase activity
LQRI_2064	COG0067	glutamate synthase
LQRI_2069	COG0475	glutathione-regulated potassium exporter activity
LQRI_2070	COG2273	Hydrolase Family 16
LQRI_2071	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LQRI_2072	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LQRI_2073	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LQRI_2074	COG5401	PFAM Sporulation and spore germination
LQRI_2075	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LQRI_2076	COG0860	N-Acetylmuramoyl-L-alanine amidase
LQRI_2078	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LQRI_2079	COG2255	four-way junction helicase activity
LQRI_2080	COG0632	four-way junction helicase activity
LQRI_2081	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LQRI_2082	COG0137	argininosuccinate synthase activity
LQRI_2083	COG0165	Argininosuccinate lyase
LQRI_2087	COG1368	sulfuric ester hydrolase activity
LQRI_2088	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
LQRI_2088	COG0493	'glutamate synthase
LQRI_2093	COG2201	protein-glutamate methylesterase activity
LQRI_2094	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LQRI_2096	COG1534	Rna-binding protein
LQRI_2098	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LQRI_2099	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LQRI_2101	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LQRI_2105	COG1470	cell adhesion involved in biofilm formation
LQRI_2106	COG3906	Belongs to the UPF0473 family
LQRI_2107	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LQRI_2108	COG0667	Aldo Keto reductase
LQRI_2109	COG4472	Bacterial protein of unknown function (DUF965)
LQRI_2110	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LQRI_2113	COG0557	exoribonuclease II activity
LQRI_2117	COG0148	phosphopyruvate hydratase activity
LQRI_2118	COG2199	diguanylate cyclase activity
LQRI_2118	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LQRI_2119	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LQRI_2120	COG0149	triose-phosphate isomerase activity
LQRI_2121	COG0126	phosphoglycerate kinase activity
LQRI_2126	COG0318	PFAM AMP-dependent synthetase and ligase
LQRI_2127	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LQRI_2128	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LQRI_2129	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LQRI_2140	COG1366	Belongs to the anti-sigma-factor antagonist family
LQRI_2141	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LQRI_2142	COG1481	regulation of sporulation
LQRI_2144	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LQRI_2145	COG1660	Displays ATPase and GTPase activities
LQRI_2146	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LQRI_2147	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LQRI_2148	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
LQRI_2151	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LQRI_2155	COG0432	Pfam Uncharacterised protein family UPF0047
LQRI_2156	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LQRI_2157	COG1979	alcohol dehydrogenase
LQRI_2159	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LQRI_2160	COG0517	IMP dehydrogenase activity
LQRI_2160	COG1994	Peptidase M50
LQRI_2161	COG0739	heme binding
LQRI_2163	COG1803	Methylglyoxal synthase
LQRI_2164	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LQRI_2165	COG2894	cell division
LQRI_2166	COG0850	regulation of cytokinetic process
LQRI_2167	COG0768	penicillin binding
LQRI_2170	COG1077	Cell shape determining protein MreB Mrl
LQRI_2171	COG0424	maF-like protein
LQRI_2176	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LQRI_2177	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LQRI_2178	COG0835	chemotaxis
LQRI_2187	COG5297	Belongs to the glycosyl hydrolase family 6
LQRI_2187	COG4447	cellulose binding
LQRI_2188	COG0017	Asparaginyl-tRNA synthetase
LQRI_2189	COG2502	aspartate--ammonia ligase
LQRI_2190	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LQRI_2194	COG1283	sodium-dependent phosphate transmembrane transporter activity
LQRI_2196	COG1368	sulfuric ester hydrolase activity
LQRI_2197	COG1268	BioY protein
LQRI_2198	COG0653	protein targeting
LQRI_2199	COG4447	cellulose binding
LQRI_2200	COG1191	sigma factor activity
LQRI_2204	COG1649	PFAM Uncharacterised BCR, COG1649
LQRI_2205	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LQRI_2214	COG3693	PFAM glycoside hydrolase, family 10
LQRI_2214	COG2382	esterase
LQRI_2214	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_2215	COG4447	cellulose binding
LQRI_2215	COG4733	cellulase activity
LQRI_2216	COG1160	GTP binding
LQRI_2218	COG4447	cellulose binding
LQRI_2218	COG4733	cellulase activity
LQRI_2219	COG0840	transmembrane signaling receptor activity
LQRI_2220	COG0835	chemotaxis
LQRI_2221	COG0840	transmembrane signaling receptor activity
LQRI_2222	COG0835	chemotaxis
LQRI_2224	COG1151	hydroxylamine reductase activity
LQRI_2228	COG4124	Belongs to the glycosyl hydrolase 26 family
LQRI_2233	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LQRI_2234	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LQRI_2235	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LQRI_2237	COG4106	trans-aconitate 2-methyltransferase activity
LQRI_2238	COG2267	carboxylic ester hydrolase activity
LQRI_2239	COG0156	8-amino-7-oxononanoate synthase activity
LQRI_2240	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LQRI_2241	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LQRI_2246	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_2256	COG3328	transposase activity
LQRI_2260	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LQRI_2264	COG1595	DNA-templated transcription, initiation
LQRI_2266	COG4124	Belongs to the glycosyl hydrolase 26 family
LQRI_2266	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
LQRI_2270	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LQRI_2271	COG0717	Belongs to the dCTP deaminase family
LQRI_2274	COG2409	Drug exporters of the RND superfamily
LQRI_2276	COG0561	phosphatase activity
LQRI_2279	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LQRI_2279	COG0426	domain, Protein
LQRI_2280	COG0494	nUDIX hydrolase
LQRI_2282	COG0840	transmembrane signaling receptor activity
LQRI_2287	COG1695	Transcriptional regulator
LQRI_2291	COG0840	transmembrane signaling receptor activity
LQRI_2292	COG0004	ammonium transporteR
LQRI_2293	COG1132	(ABC) transporter
LQRI_2294	COG1132	(ABC) transporter
LQRI_2298	COG1361	Conserved repeat domain
LQRI_2302	COG1393	Belongs to the ArsC family
LQRI_2323	COG0577	efflux transmembrane transporter activity
LQRI_2324	COG1136	(ABC) transporter
LQRI_2325	COG2205	protein histidine kinase activity
LQRI_2326	COG0745	RESPONSE REGULATOR receiver
LQRI_2333	COG1131	(ABC) transporter
LQRI_2335	COG3620	sequence-specific DNA binding
LQRI_2337	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LQRI_2338	COG0154	amidase activity
LQRI_2340	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LQRI_2344	COG1024	Enoyl-CoA hydratase
LQRI_2345	COG4106	trans-aconitate 2-methyltransferase activity
LQRI_2346	COG2140	Oxalate decarboxylase
LQRI_2350	COG1464	Belongs to the NlpA lipoprotein family
LQRI_2351	COG2011	ABC-type metal ion transport system permease component
LQRI_2352	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LQRI_2354	COG0626	cystathionine gamma-synthase activity
LQRI_2355	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LQRI_2363	COG0535	radical SAM domain protein
LQRI_2364	COG2873	o-acetylhomoserine
LQRI_2365	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LQRI_2366	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LQRI_2368	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
LQRI_2370	COG0813	purine-nucleoside phosphorylase activity
LQRI_2371	COG1744	ABC transporter substrate-binding protein PnrA-like
LQRI_2372	COG1328	CTP reductase activity
LQRI_2373	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LQRI_2374	COG3845	ABC transporter
LQRI_2375	COG4603	Belongs to the binding-protein-dependent transport system permease family
LQRI_2376	COG1079	Belongs to the binding-protein-dependent transport system permease family
LQRI_2377	COG0295	cytidine deaminase activity
LQRI_2379	COG2207	Transcriptional regulator
LQRI_2379	COG4753	response regulator
LQRI_2382	COG3842	ATPase activity
LQRI_2393	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LQRI_2404	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LQRI_2408	COG3409	Peptidoglycan-binding domain 1 protein
LQRI_2408	COG5632	N-Acetylmuramoyl-L-alanine amidase
LQRI_2424	COG0740	serine-type endopeptidase activity
LQRI_2425	COG4695	Portal protein
LQRI_2426	COG1802	Transcriptional regulator
LQRI_2426	COG4626	Terminase
LQRI_2440	COG1136	(ABC) transporter
LQRI_2442	COG2205	protein histidine kinase activity
LQRI_2443	COG0745	RESPONSE REGULATOR receiver
LQRI_2453	COG1120	ATPase activity
LQRI_2454	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LQRI_2455	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LQRI_2457	COG0739	heme binding
LQRI_2461	COG0577	efflux transmembrane transporter activity
LQRI_2463	COG1136	(ABC) transporter
LQRI_2471	COG1592	Rubrerythrin
LQRI_2472	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LQRI_2473	COG1067	ATP-dependent peptidase activity
LQRI_2474	COG0456	acetyltransferase
LQRI_2475	COG1214	PFAM Peptidase M22, glycoprotease
LQRI_2476	COG0802	atpase or kinase
LQRI_2477	COG1228	amidohydrolase
LQRI_2482	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LQRI_2483	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LQRI_2485	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
LQRI_2486	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LQRI_2488	COG1215	transferase activity, transferring glycosyl groups
LQRI_2489	COG0542	response to heat
LQRI_2490	COG3869	Catalyzes the specific phosphorylation of arginine residues in
LQRI_2491	COG3880	PFAM UvrB UvrC protein
LQRI_2495	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
LQRI_2496	COG0287	Prephenate dehydrogenase
LQRI_2497	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LQRI_2498	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
LQRI_2499	COG0488	(ABC) transporter
LQRI_2501	COG1122	ATPase activity
LQRI_2503	COG0310	cobalt ion transport
LQRI_2504	COG0860	N-Acetylmuramoyl-L-alanine amidase
LQRI_2505	COG0745	RESPONSE REGULATOR receiver
LQRI_2509	COG1595	DNA-templated transcription, initiation
LQRI_2512	COG0829	nickel cation binding
LQRI_2513	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
LQRI_2515	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
LQRI_2516	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
LQRI_2517	COG0804	urea catabolic process
LQRI_2518	COG0832	Belongs to the urease beta subunit family
LQRI_2519	COG0831	urea catabolic process
LQRI_2525	COG2207	Transcriptional regulator
LQRI_2525	COG4753	response regulator
LQRI_2527	COG4251	negative regulation of phosphorylation
LQRI_2535	COG3328	transposase activity
LQRI_2541	COG3328	transposase activity
LQRI_2557	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LQRI_2559	COG1606	tRNA processing
LQRI_2561	COG1959	2 iron, 2 sulfur cluster binding
LQRI_2562	COG1959	2 iron, 2 sulfur cluster binding
LQRI_2563	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
LQRI_2564	COG5002	protein histidine kinase activity
LQRI_2565	COG0745	RESPONSE REGULATOR receiver
LQRI_2566	COG2217	Heavy metal translocating P-type atpase
LQRI_2570	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LQRI_2571	COG1278	Cold shock
LQRI_2572	COG3695	enzyme binding
LQRI_2575	COG3409	Peptidoglycan-binding domain 1 protein
LQRI_2575	COG0793	Belongs to the peptidase S41A family
LQRI_2577	COG2177	Part of the ABC transporter FtsEX involved in
LQRI_2578	COG2884	Cell division ATP-binding protein ftsE
LQRI_2579	COG3835	regulator
LQRI_2580	COG3842	ATPase activity
LQRI_2581	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LQRI_2582	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LQRI_2584	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LQRI_2585	COG0505	Belongs to the CarA family
LQRI_2586	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LQRI_2587	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LQRI_2590	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
LQRI_2594	COG1695	Transcriptional regulator
LQRI_2595	COG1408	metallophosphoesterase
LQRI_2597	COG1876	peptidase activity
LQRI_2599	COG3328	transposase activity
LQRI_2601	COG0726	polysaccharide deacetylase
LQRI_2605	COG0300	oxidoreductase activity
LQRI_2605	COG0318	PFAM AMP-dependent synthetase and ligase
LQRI_2605	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LQRI_2605	COG3321	synthase
LQRI_2605	COG1028	Short-chain dehydrogenase reductase Sdr
LQRI_2614	COG5002	protein histidine kinase activity
LQRI_2615	COG0745	RESPONSE REGULATOR receiver
LQRI_2616	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LQRI_2617	COG1982	Orn Lys Arg decarboxylase major
LQRI_2618	COG1285	pathogenesis
LQRI_2620	COG1695	Transcriptional regulator
LQRI_2622	COG0504	CTP synthase activity
LQRI_2623	COG3328	transposase activity
LQRI_2627	COG3409	Peptidoglycan-binding domain 1 protein
LQRI_2627	COG0793	Belongs to the peptidase S41A family
LQRI_2630	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LQRI_2632	COG0018	arginyl-trna synthetase
LQRI_2634	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LQRI_2635	COG1181	Belongs to the D-alanine--D-alanine ligase family
LQRI_2636	COG2239	Acts as a magnesium transporter
LQRI_2641	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LQRI_2642	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
LQRI_2643	COG0492	ferredoxin-NADP+ reductase activity
LQRI_2645	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LQRI_2646	COG0785	Cytochrome C biogenesis protein
LQRI_2653	COG2183	response to ionizing radiation
LQRI_2658	COG2226	methyltransferase
LQRI_2660	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LQRI_2662	COG2382	esterase
LQRI_2662	COG3693	PFAM glycoside hydrolase, family 10
LQRI_2662	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_2663	COG3634	alkyl hydroperoxide reductase activity
LQRI_2664	COG0450	alkyl hydroperoxide reductase
LQRI_2667	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LQRI_2698	COG3328	transposase activity
LQRI_2704	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LQRI_2715	COG3328	transposase activity
LQRI_2731	COG0457	Tetratricopeptide repeat
LQRI_2731	COG0515	serine threonine protein kinase
LQRI_2735	COG3328	transposase activity
LQRI_2737	COG1074	ATP-dependent DNA helicase activity
LQRI_2738	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
LQRI_2762	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
LQRI_2765	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LQRI_2767	COG0697	spore germination
LQRI_2770	COG0215	cysteine-tRNA ligase activity
LQRI_2771	COG1045	serine acetyltransferase
LQRI_2778	COG1473	amidohydrolase
LQRI_2779	COG2155	Conserved Protein
LQRI_2781	COG0217	transcriptional regulatory protein
LQRI_2782	COG5002	protein histidine kinase activity
LQRI_2784	COG1739	Uncharacterized protein family UPF0029
LQRI_2785	COG0681	Belongs to the peptidase S26 family
LQRI_2786	COG0494	nUDIX hydrolase
LQRI_2787	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LQRI_2789	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LQRI_2790	COG0756	dUTP diphosphatase activity
LQRI_2791	COG0826	peptidase U32
LQRI_2792	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LQRI_2794	COG5297	Belongs to the glycosyl hydrolase family 6
LQRI_2797	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LQRI_2798	COG3583	domain protein
LQRI_2798	COG3584	3D domain protein
LQRI_2800	COG0084	hydrolase, TatD family'
LQRI_2801	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LQRI_2801	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LQRI_2803	COG0700	Nucleoside recognition
LQRI_2804	COG2715	membrane protein required for spore maturation
LQRI_2805	COG2002	toxin-antitoxin pair type II binding
LQRI_2806	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LQRI_2807	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LQRI_2809	COG1774	PSP1 C-terminal conserved region
LQRI_2810	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LQRI_2811	COG1728	Protein conserved in bacteria
LQRI_2813	COG1982	Orn Lys Arg decarboxylase major
LQRI_2816	COG1136	(ABC) transporter
LQRI_2819	COG5002	protein histidine kinase activity
LQRI_2821	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LQRI_2822	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LQRI_2824	COG3693	PFAM glycoside hydrolase, family 10
LQRI_2825	COG1191	sigma factor activity
LQRI_2830	COG0395	ABC-type sugar transport system, permease component
LQRI_2831	COG1175	transmembrane transport
LQRI_2832	COG0714	Associated with various cellular activities
LQRI_2840	COG3940	Belongs to the glycosyl hydrolase 43 family
LQRI_2841	COG3940	Belongs to the glycosyl hydrolase 43 family
LQRI_2844	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LQRI_2845	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LQRI_2846	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
LQRI_2847	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LQRI_2857	COG1361	Conserved repeat domain
LQRI_2865	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
LQRI_2868	COG1773	rubredoxin
LQRI_2873	COG1408	metallophosphoesterase
LQRI_2876	COG0254	rRNA binding
LQRI_2877	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LQRI_2889	COG0038	chloride channel
LQRI_2890	COG0037	tRNA processing
LQRI_2892	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LQRI_2893	COG1295	ribonuclease BN
LQRI_2894	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LQRI_2895	COG0629	single-stranded DNA binding
LQRI_2896	COG0360	Binds together with S18 to 16S ribosomal RNA
LQRI_2898	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LQRI_2899	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LQRI_2901	COG3693	PFAM glycoside hydrolase, family 10
LQRI_2901	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_2901	COG2382	esterase
LQRI_2902	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_2903	COG3693	PFAM glycoside hydrolase, family 10
LQRI_2903	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_2903	COG2382	esterase
LQRI_2904	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_2904	COG2382	esterase
LQRI_2904	COG3693	PFAM glycoside hydrolase, family 10
LQRI_2905	COG3507	Belongs to the glycosyl hydrolase 43 family
LQRI_2906	COG3250	beta-galactosidase activity
LQRI_2909	COG4978	Transcriptional regulator
LQRI_2909	COG0789	Transcriptional regulator
LQRI_2910	COG0577	efflux transmembrane transporter activity
LQRI_2911	COG1136	(ABC) transporter
LQRI_2912	COG5002	protein histidine kinase activity
LQRI_2913	COG0745	RESPONSE REGULATOR receiver
LQRI_2921	COG0302	gtp cyclohydrolase
LQRI_2922	COG1181	Belongs to the D-alanine--D-alanine ligase family
LQRI_2922	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LQRI_2923	COG4242	Belongs to the peptidase S51 family
LQRI_2925	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LQRI_2926	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LQRI_2927	COG0473	3-isopropylmalate dehydrogenase activity
LQRI_2928	COG0066	3-isopropylmalate dehydratase activity
LQRI_2929	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LQRI_2930	COG2207	Transcriptional regulator
LQRI_2931	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
LQRI_2935	COG1516	flagellar protein fliS
LQRI_2936	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LQRI_2938	COG1088	dTDP-glucose 4,6-dehydratase activity
LQRI_2939	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LQRI_2942	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LQRI_2945	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LQRI_2947	COG2089	acid synthase
LQRI_2948	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
LQRI_2949	COG2226	methyltransferase
LQRI_2950	COG1086	Polysaccharide biosynthesis protein
LQRI_2954	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LQRI_2955	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LQRI_2957	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LQRI_2958	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
LQRI_2960	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LQRI_2961	COG1256	bacterial-type flagellum assembly
LQRI_2961	COG4786	Flagellar basal body rod
LQRI_2966	COG1040	competence protein
LQRI_2967	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LQRI_2969	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LQRI_2971	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LQRI_2972	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
LQRI_2973	COG0037	tRNA processing
LQRI_2974	COG0305	Participates in initiation and elongation during chromosome replication
LQRI_2975	COG0359	binds to the 23S rRNA
LQRI_2976	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
LQRI_2978	COG1605	Chorismate mutase
LQRI_2978	COG0077	Prephenate dehydratase
LQRI_2980	COG1269	ATP hydrolysis coupled proton transport
LQRI_2981	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LQRI_2982	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
LQRI_2985	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
LQRI_2986	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
LQRI_2987	COG1394	ATPase activity, coupled to movement of substances
LQRI_2988	COG0488	(ABC) transporter
LQRI_2995	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LQRI_2998	COG0765	amino acid transport
LQRI_3000	COG2201	protein-glutamate methylesterase activity
LQRI_3001	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LQRI_3003	COG0643	Histidine kinase
LQRI_3003	COG2198	Histidine kinase
LQRI_3004	COG0835	chemotaxis
LQRI_3005	COG0582	viral genome integration into host DNA
LQRI_3006	COG3708	Transcriptional regulator
LQRI_3006	COG2207	Transcriptional regulator
LQRI_3009	COG1131	(ABC) transporter
LQRI_3015	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
LQRI_3016	COG1518	maintenance of DNA repeat elements
LQRI_3024	COG1968	undecaprenyl-diphosphatase activity
LQRI_3025	COG0534	Mate efflux family protein
LQRI_3033	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LQRI_3034	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LQRI_3035	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LQRI_3039	COG5002	protein histidine kinase activity
LQRI_3040	COG0745	RESPONSE REGULATOR receiver
LQRI_3045	COG0438	transferase activity, transferring glycosyl groups
LQRI_3047	COG0438	transferase activity, transferring glycosyl groups
LQRI_3053	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LQRI_3054	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LQRI_3057	COG1361	Conserved repeat domain
LQRI_3059	COG3773	Cell wall hydrolase
LQRI_3061	COG0517	IMP dehydrogenase activity
LQRI_3064	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LQRI_3065	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LQRI_3070	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LQRI_3071	COG4447	cellulose binding
LQRI_3071	COG4733	cellulase activity
LQRI_3072	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LQRI_3073	COG1475	DNA binding
LQRI_3074	COG0357	Ribosomal RNA small subunit methyltransferase G
LQRI_3075	COG0445	tRNA wobble uridine modification
LQRI_3076	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LQRI_3077	COG1847	R3H domain protein
LQRI_3078	COG0706	membrane insertase activity
LQRI_3079	COG0759	Could be involved in insertion of integral membrane proteins into the membrane