locus-tag class description EMQ_0001 PF00308 Bacterial dnaA protein EMQ_0001 PF08299 Bacterial dnaA protein helix-turn-helix EMQ_0001 PF11638 DnaA N-terminal domain EMQ_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain EMQ_0002 PF02767 DNA polymerase III beta subunit, central domain EMQ_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain EMQ_0003 PF02463 RecF/RecN/SMC N terminal domain EMQ_0004 PF00986 DNA gyrase B subunit, carboxyl terminus EMQ_0004 PF00204 DNA gyrase B EMQ_0004 PF01751 Toprim domain EMQ_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_0007 PF00571 CBS domain EMQ_0007 PF03471 Transporter associated domain EMQ_0008 PF02130 Uncharacterized protein family UPF0054 EMQ_0009 PF02562 PhoH-like protein EMQ_0010 PF00919 Uncharacterized protein family UPF0004 EMQ_0010 PF04055 Radical SAM superfamily EMQ_0010 PF01938 TRAM domain EMQ_0012 PF17243 POTRA domain TamA domain 1 EMQ_0012 PF01103 Surface antigen EMQ_0012 PF07244 Surface antigen variable number repeat EMQ_0015 PF09330 D-lactate dehydrogenase, membrane binding EMQ_0015 PF01565 FAD binding domain EMQ_0017 PF17827 PrmC N-terminal domain EMQ_0017 PF13847 Methyltransferase domain EMQ_0018 PF00768 D-alanyl-D-alanine carboxypeptidase EMQ_0018 PF07943 Penicillin-binding protein 5, C-terminal domain EMQ_0019 PF02617 ATP-dependent Clp protease adaptor protein ClpS EMQ_0021 PF10145 Phage-related minor tail protein EMQ_0021 PF01551 Peptidase family M23 EMQ_0021 PF01464 Transglycosylase SLT domain EMQ_0022 PF16198 tRNA pseudouridylate synthase B C-terminal domain EMQ_0022 PF01509 TruB family pseudouridylate synthase (N terminal domain) EMQ_0023 PF00312 Ribosomal protein S15 EMQ_0024 PF00013 KH domain EMQ_0024 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EMQ_0024 PF01138 3' exoribonuclease family, domain 1 EMQ_0024 PF03725 3' exoribonuclease family, domain 2 EMQ_0024 PF00575 S1 RNA binding domain EMQ_0026 PF03548 Outer membrane lipoprotein carrier protein LolA EMQ_0030 PF17863 AAA lid domain EMQ_0030 PF07726 ATPase family associated with various cellular activities (AAA) EMQ_0032 PF01743 Poly A polymerase head domain EMQ_0032 PF13735 tRNA nucleotidyltransferase domain 2 putative EMQ_0032 PF12627 Probable RNA and SrmB- binding site of polymerase A EMQ_0033 PF00664 ABC transporter transmembrane region EMQ_0033 PF00005 ABC transporter EMQ_0034 PF01258 Prokaryotic dksA/traR C4-type zinc finger EMQ_0036 PF02637 GatB domain EMQ_0036 PF02934 GatB/GatE catalytic domain EMQ_0037 PF01425 Amidase EMQ_0038 PF02686 Glu-tRNAGln amidotransferase C subunit EMQ_0039 PF03652 Holliday junction resolvase EMQ_0041 PF00990 Diguanylate cyclase, GGDEF domain EMQ_0041 PF17155 Gammaproteobacterial periplasmic sensor domain EMQ_0042 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EMQ_0042 PF14602 Hexapeptide repeat of succinyl-transferase EMQ_0042 PF00132 Bacterial transferase hexapeptide (six repeats) EMQ_0043 PF07687 Peptidase dimerisation domain EMQ_0043 PF01546 Peptidase family M20/M25/M40 EMQ_0045 PF00534 Glycosyl transferases group 1 EMQ_0045 PF13439 Glycosyltransferase Family 4 EMQ_0047 PF00834 Ribulose-phosphate 3 epimerase family EMQ_0049 PF01189 16S rRNA methyltransferase RsmB/F EMQ_0049 PF01029 NusB family EMQ_0053 PF01032 FecCD transport family EMQ_0054 PF00005 ABC transporter EMQ_0055 PF00171 Aldehyde dehydrogenase family EMQ_0056 PF00107 Zinc-binding dehydrogenase EMQ_0056 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_0057 PF02233 NAD(P) transhydrogenase beta subunit EMQ_0058 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EMQ_0059 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EMQ_0059 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EMQ_0060 PF02447 GntP family permease EMQ_0064 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EMQ_0064 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EMQ_0066 PF12857 TOBE-like domain EMQ_0066 PF00005 ABC transporter EMQ_0067 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_0068 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_0071 PF02321 Outer membrane efflux protein EMQ_0073 PF00873 AcrB/AcrD/AcrF family EMQ_0075 PF06426 Serine acetyltransferase, N-terminal EMQ_0075 PF00132 Bacterial transferase hexapeptide (six repeats) EMQ_0078 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EMQ_0078 PF00005 ABC transporter EMQ_0079 PF00005 ABC transporter EMQ_0079 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EMQ_0080 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_0081 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_0081 PF12911 N-terminal TM domain of oligopeptide transport permease C EMQ_0082 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EMQ_0084 PF00476 DNA polymerase family A EMQ_0084 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EMQ_0084 PF01367 5'-3' exonuclease, C-terminal SAM fold EMQ_0084 PF01612 3'-5' exonuclease EMQ_0086 PF00561 alpha/beta hydrolase fold EMQ_0089 PF03466 LysR substrate binding domain EMQ_0089 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0091 PF06772 Bacterial low temperature requirement A protein (LtrA) EMQ_0094 PF02445 Quinolinate synthetase A protein EMQ_0095 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EMQ_0095 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EMQ_0097 PF06463 Molybdenum Cofactor Synthesis C EMQ_0097 PF04055 Radical SAM superfamily EMQ_0098 PF01926 50S ribosome-binding GTPase EMQ_0098 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EMQ_0103 PF01613 Flavin reductase like domain EMQ_0104 PF03960 ArsC family EMQ_0105 PF00313 'Cold-shock' DNA-binding domain EMQ_0110 PF01370 NAD dependent epimerase/dehydratase family EMQ_0112 PF00753 Metallo-beta-lactamase superfamily EMQ_0115 PF13478 XdhC Rossmann domain EMQ_0115 PF02625 XdhC and CoxI family EMQ_0118 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EMQ_0119 PF07969 Amidohydrolase family EMQ_0120 PF13417 Glutathione S-transferase, N-terminal domain EMQ_0120 PF00043 Glutathione S-transferase, C-terminal domain EMQ_0121 PF05209 Septum formation inhibitor MinC, N-terminal domain EMQ_0121 PF03775 Septum formation inhibitor MinC, C-terminal domain EMQ_0122 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EMQ_0123 PF03776 Septum formation topological specificity factor MinE EMQ_0124 PF05506 Domain of unknown function (DUF756) EMQ_0124 PF04185 Phosphoesterase family EMQ_0125 PF06039 Malate:quinone oxidoreductase (Mqo) EMQ_0126 PF02566 OsmC-like protein EMQ_0127 PF04055 Radical SAM superfamily EMQ_0127 PF06968 Biotin and Thiamin Synthesis associated domain EMQ_0128 PF00563 EAL domain EMQ_0128 PF03707 Bacterial signalling protein N terminal repeat EMQ_0128 PF00990 Diguanylate cyclase, GGDEF domain EMQ_0130 PF05649 Peptidase family M13 EMQ_0130 PF01431 Peptidase family M13 EMQ_0135 PF00698 Acyl transferase domain EMQ_0137 PF00550 Phosphopantetheine attachment site EMQ_0138 PF02801 Beta-ketoacyl synthase, C-terminal domain EMQ_0138 PF00109 Beta-ketoacyl synthase, N-terminal domain EMQ_0140 PF00732 GMC oxidoreductase EMQ_0140 PF05199 GMC oxidoreductase EMQ_0141 PF13186 Iron-sulfur cluster-binding domain EMQ_0141 PF04055 Radical SAM superfamily EMQ_0142 PF05402 Coenzyme PQQ synthesis protein D (PqqD) EMQ_0143 PF03070 TENA/THI-4/PQQC family EMQ_0144 PF12706 Beta-lactamase superfamily domain EMQ_0148 PF05401 Nodulation protein S (NodS) EMQ_0152 PF04403 Paraquat-inducible protein A EMQ_0155 PF02321 Outer membrane efflux protein EMQ_0156 PF00873 AcrB/AcrD/AcrF family EMQ_0157 PF00873 AcrB/AcrD/AcrF family EMQ_0158 PF13533 Biotin-lipoyl like EMQ_0160 PF01555 DNA methylase EMQ_0160 PF18755 Restriction Enzyme Adenine Methylase Associated EMQ_0161 PF01351 Ribonuclease HII EMQ_0163 PF07690 Major Facilitator Superfamily EMQ_0167 PF05746 DALR anticodon binding domain EMQ_0167 PF02092 Glycyl-tRNA synthetase beta subunit EMQ_0168 PF02091 Glycyl-tRNA synthetase alpha subunit EMQ_0169 PF02733 Dak1 domain EMQ_0169 PF02734 DAK2 domain EMQ_0170 PF04073 Aminoacyl-tRNA editing domain EMQ_0173 PF01625 Peptide methionine sulfoxide reductase EMQ_0174 PF10458 Valyl tRNA synthetase tRNA binding arm EMQ_0174 PF08264 Anticodon-binding domain of tRNA EMQ_0174 PF00133 tRNA synthetases class I (I, L, M and V) EMQ_0178 PF02685 Glucokinase EMQ_0179 PF00106 short chain dehydrogenase EMQ_0183 PF00529 HlyD membrane-fusion protein of T1SS EMQ_0183 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EMQ_0187 PF00394 Multicopper oxidase EMQ_0187 PF07731 Multicopper oxidase EMQ_0187 PF07732 Multicopper oxidase EMQ_0188 PF05275 Copper resistance protein B precursor (CopB) EMQ_0192 PF04972 BON domain EMQ_0192 PF13629 Pilus formation protein N terminal region EMQ_0192 PF00263 Bacterial type II and III secretion system protein EMQ_0195 PF00437 Type II/IV secretion system protein EMQ_0202 PF03150 Di-haem cytochrome c peroxidase EMQ_0202 PF00034 Cytochrome c EMQ_0202 PF14376 Haem-binding domain EMQ_0203 PF01555 DNA methylase EMQ_0206 PF02556 Preprotein translocase subunit SecB EMQ_0209 PF01078 Magnesium chelatase, subunit ChlI EMQ_0209 PF13335 Magnesium chelatase, subunit ChlI C-terminal EMQ_0210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EMQ_0210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EMQ_0211 PF00459 Inositol monophosphatase family EMQ_0212 PF00034 Cytochrome c EMQ_0215 PF02348 Cytidylyltransferase EMQ_0216 PF01842 ACT domain EMQ_0216 PF01817 Chorismate mutase type II EMQ_0216 PF00800 Prephenate dehydratase EMQ_0217 PF00701 Dihydrodipicolinate synthetase family EMQ_0218 PF01668 SmpB protein EMQ_0219 PF00313 'Cold-shock' DNA-binding domain EMQ_0221 PF00589 Phage integrase family EMQ_0222 PF00155 Aminotransferase class I and II EMQ_0222 PF00392 Bacterial regulatory proteins, gntR family EMQ_0224 PF00795 Carbon-nitrogen hydrolase EMQ_0227 PF00586 AIR synthase related protein, N-terminal domain EMQ_0227 PF02769 AIR synthase related protein, C-terminal domain EMQ_0228 PF00534 Glycosyl transferases group 1 EMQ_0231 PF00501 AMP-binding enzyme EMQ_0231 PF16177 Acetyl-coenzyme A synthetase N-terminus EMQ_0231 PF13193 AMP-binding enzyme C-terminal domain EMQ_0233 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0233 PF03466 LysR substrate binding domain EMQ_0234 PF02525 Flavodoxin-like fold EMQ_0249 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0249 PF03466 LysR substrate binding domain EMQ_0250 PF01717 Cobalamin-independent synthase, Catalytic domain EMQ_0250 PF08267 Cobalamin-independent synthase, N-terminal domain EMQ_0254 PF13333 Integrase core domain EMQ_0254 PF13276 HTH-like domain EMQ_0254 PF00665 Integrase core domain EMQ_0255 PF01527 Transposase EMQ_0262 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_0265 PF02583 Metal-sensitive transcriptional repressor EMQ_0266 PF07731 Multicopper oxidase EMQ_0266 PF07732 Multicopper oxidase EMQ_0266 PF00394 Multicopper oxidase EMQ_0267 PF05275 Copper resistance protein B precursor (CopB) EMQ_0272 PF00440 Bacterial regulatory proteins, tetR family EMQ_0273 PF00857 Isochorismatase family EMQ_0274 PF07690 Major Facilitator Superfamily EMQ_0277 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_0278 PF00654 Voltage gated chloride channel EMQ_0279 PF00999 Sodium/hydrogen exchanger family EMQ_0283 PF01527 Transposase EMQ_0284 PF13276 HTH-like domain EMQ_0284 PF13333 Integrase core domain EMQ_0284 PF00665 Integrase core domain EMQ_0288 PF05974 Domain of unknown function (DUF892) EMQ_0289 PF01609 Transposase DDE domain EMQ_0290 PF00171 Aldehyde dehydrogenase family EMQ_0291 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EMQ_0292 PF01638 HxlR-like helix-turn-helix EMQ_0294 PF01609 Transposase DDE domain EMQ_0295 PF01638 HxlR-like helix-turn-helix EMQ_0296 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EMQ_0297 PF01609 Transposase DDE domain EMQ_0305 PF00589 Phage integrase family EMQ_0305 PF14659 Phage integrase, N-terminal SAM-like domain EMQ_0305 PF13356 Arm DNA-binding domain EMQ_0306 PF00829 Ribosomal prokaryotic L21 protein EMQ_0307 PF01016 Ribosomal L27 protein EMQ_0308 PF01926 50S ribosome-binding GTPase EMQ_0308 PF01018 GTP1/OBG EMQ_0309 PF01472 PUA domain EMQ_0309 PF00696 Amino acid kinase family EMQ_0313 PF00580 UvrD/REP helicase N-terminal domain EMQ_0313 PF13361 UvrD-like helicase C-terminal domain EMQ_0314 PF04055 Radical SAM superfamily EMQ_0320 PF01966 HD domain EMQ_0320 PF08335 GlnD PII-uridylyltransferase EMQ_0321 PF01624 MutS domain I EMQ_0321 PF05188 MutS domain II EMQ_0321 PF05192 MutS domain III EMQ_0321 PF05190 MutS family domain IV EMQ_0321 PF00488 MutS domain V EMQ_0322 PF01464 Transglycosylase SLT domain EMQ_0322 PF01551 Peptidase family M23 EMQ_0322 PF10145 Phage-related minor tail protein EMQ_0323 PF03741 Integral membrane protein TerC family EMQ_0326 PF00196 Bacterial regulatory proteins, luxR family EMQ_0326 PF00072 Response regulator receiver domain EMQ_0327 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EMQ_0327 PF14824 Sirohaem biosynthesis protein central EMQ_0327 PF10414 Sirohaem synthase dimerisation region EMQ_0328 PF06793 Uncharacterised protein family (UPF0262) EMQ_0329 PF00571 CBS domain EMQ_0329 PF00478 IMP dehydrogenase / GMP reductase domain EMQ_0330 PF01189 16S rRNA methyltransferase RsmB/F EMQ_0330 PF01029 NusB family EMQ_0332 PF00117 Glutamine amidotransferase class-I EMQ_0333 PF00591 Glycosyl transferase family, a/b domain EMQ_0333 PF02885 Glycosyl transferase family, helical bundle domain EMQ_0334 PF00218 Indole-3-glycerol phosphate synthase EMQ_0335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EMQ_0335 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_0336 PF02817 e3 binding domain EMQ_0336 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EMQ_0336 PF00364 Biotin-requiring enzyme EMQ_0337 PF00364 Biotin-requiring enzyme EMQ_0337 PF02779 Transketolase, pyrimidine binding domain EMQ_0337 PF02780 Transketolase, C-terminal domain EMQ_0338 PF00676 Dehydrogenase E1 component EMQ_0339 PF06114 IrrE N-terminal-like domain EMQ_0339 PF01381 Helix-turn-helix EMQ_0339 PF09856 Predicted transcriptional regulator (DUF2083) EMQ_0340 PF00551 Formyl transferase EMQ_0341 PF00586 AIR synthase related protein, N-terminal domain EMQ_0341 PF02769 AIR synthase related protein, C-terminal domain EMQ_0343 PF13089 Polyphosphate kinase N-terminal domain EMQ_0343 PF17941 Polyphosphate kinase C-terminal domain 1 EMQ_0343 PF13090 Polyphosphate kinase C-terminal domain 2 EMQ_0343 PF02503 Polyphosphate kinase middle domain EMQ_0345 PF02618 YceG-like family EMQ_0349 PF13593 SBF-like CPA transporter family (DUF4137) EMQ_0351 PF09827 CRISPR associated protein Cas2 EMQ_0352 PF01867 CRISPR associated protein Cas1 EMQ_0353 PF18470 Cas9 alpha-helical lobe domain EMQ_0353 PF13395 HNH endonuclease EMQ_0353 PF18541 RuvC endonuclease subdomain 3 EMQ_0357 PF06750 Bacterial Peptidase A24 N-terminal domain EMQ_0357 PF01478 Type IV leader peptidase family EMQ_0358 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EMQ_0358 PF00437 Type II/IV secretion system protein EMQ_0359 PF00482 Type II secretion system (T2SS), protein F EMQ_0361 PF07963 Prokaryotic N-terminal methylation motif EMQ_0364 PF04185 Phosphoesterase family EMQ_0367 PF01728 FtsJ-like methyltransferase EMQ_0369 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EMQ_0369 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EMQ_0370 PF00398 Ribosomal RNA adenine dimethylase EMQ_0371 PF00639 PPIC-type PPIASE domain EMQ_0371 PF09312 SurA N-terminal domain EMQ_0376 PF04632 Fusaric acid resistance protein family EMQ_0377 PF00529 HlyD membrane-fusion protein of T1SS EMQ_0377 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EMQ_0379 PF00575 S1 RNA binding domain EMQ_0381 PF00535 Glycosyl transferase family 2 EMQ_0383 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EMQ_0383 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EMQ_0387 PF16363 GDP-mannose 4,6 dehydratase EMQ_0390 PF01184 GPR1/FUN34/yaaH family EMQ_0392 PF00005 ABC transporter EMQ_0392 PF00664 ABC transporter transmembrane region EMQ_0393 PF00534 Glycosyl transferases group 1 EMQ_0393 PF13439 Glycosyltransferase Family 4 EMQ_0395 PF01894 Uncharacterised protein family UPF0047 EMQ_0397 PF01758 Sodium Bile acid symporter family EMQ_0400 PF00654 Voltage gated chloride channel EMQ_0401 PF16916 Dimerisation domain of Zinc Transporter EMQ_0401 PF01545 Cation efflux family EMQ_0402 PF01545 Cation efflux family EMQ_0402 PF16916 Dimerisation domain of Zinc Transporter EMQ_0404 PF02224 Cytidylate kinase EMQ_0406 PF02355 Protein export membrane protein EMQ_0406 PF07549 SecD/SecF GG Motif EMQ_0407 PF02355 Protein export membrane protein EMQ_0407 PF07549 SecD/SecF GG Motif EMQ_0411 PF00119 ATP synthase A chain EMQ_0412 PF00137 ATP synthase subunit C EMQ_0413 PF00430 ATP synthase B/B' CF(0) EMQ_0414 PF00430 ATP synthase B/B' CF(0) EMQ_0415 PF00535 Glycosyl transferase family 2 EMQ_0417 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_0419 PF17768 RecJ OB domain EMQ_0419 PF02272 DHHA1 domain EMQ_0419 PF10141 Single-strand DNA-specific exonuclease, C terminal domain EMQ_0419 PF01368 DHH family EMQ_0420 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded EMQ_0421 PF01842 ACT domain EMQ_0421 PF00742 Homoserine dehydrogenase EMQ_0421 PF03447 Homoserine dehydrogenase, NAD binding domain EMQ_0422 PF00155 Aminotransferase class I and II EMQ_0424 PF07690 Major Facilitator Superfamily EMQ_0426 PF00593 TonB dependent receptor EMQ_0426 PF07715 TonB-dependent Receptor Plug Domain EMQ_0429 PF03649 Uncharacterised protein family (UPF0014) EMQ_0430 PF00005 ABC transporter EMQ_0434 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EMQ_0434 PF01488 Shikimate / quinate 5-dehydrogenase EMQ_0434 PF08501 Shikimate dehydrogenase substrate binding domain EMQ_0435 PF01121 Dephospho-CoA kinase EMQ_0436 PF00929 Exonuclease EMQ_0437 PF00672 HAMP domain EMQ_0437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_0437 PF00512 His Kinase A (phospho-acceptor) domain EMQ_0438 PF00486 Transcriptional regulatory protein, C terminal EMQ_0438 PF00072 Response regulator receiver domain EMQ_0440 PF07690 Major Facilitator Superfamily EMQ_0442 PF00483 Nucleotidyl transferase EMQ_0443 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EMQ_0443 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EMQ_0443 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EMQ_0443 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EMQ_0445 PF04055 Radical SAM superfamily EMQ_0445 PF06463 Molybdenum Cofactor Synthesis C EMQ_0448 PF01425 Amidase EMQ_0450 PF01914 MarC family integral membrane protein EMQ_0451 PF03167 Uracil DNA glycosylase superfamily EMQ_0452 PF02146 Sir2 family EMQ_0455 PF00009 Elongation factor Tu GTP binding domain EMQ_0456 PF01507 Phosphoadenosine phosphosulfate reductase family EMQ_0457 PF01507 Phosphoadenosine phosphosulfate reductase family EMQ_0458 PF14497 Glutathione S-transferase, C-terminal domain EMQ_0458 PF02798 Glutathione S-transferase, N-terminal domain EMQ_0459 PF08241 Methyltransferase domain EMQ_0460 PF00156 Phosphoribosyl transferase domain EMQ_0461 PF00462 Glutaredoxin EMQ_0467 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_0468 PF00072 Response regulator receiver domain EMQ_0468 PF00486 Transcriptional regulatory protein, C terminal EMQ_0469 PF09335 SNARE associated Golgi protein EMQ_0472 PF02559 CarD-like/TRCF domain EMQ_0474 PF00916 Sulfate permease family EMQ_0474 PF01740 STAS domain EMQ_0478 PF00005 ABC transporter EMQ_0481 PF01554 MatE EMQ_0482 PF01258 Prokaryotic dksA/traR C4-type zinc finger EMQ_0484 PF02119 Flagellar P-ring protein EMQ_0488 PF01008 Initiation factor 2 subunit family EMQ_0490 PF00581 Rhodanese-like domain EMQ_0491 PF00571 CBS domain EMQ_0491 PF00291 Pyridoxal-phosphate dependent enzyme EMQ_0494 PF04399 Glutaredoxin 2, C terminal domain EMQ_0494 PF13417 Glutathione S-transferase, N-terminal domain EMQ_0495 PF01118 Semialdehyde dehydrogenase, NAD binding domain EMQ_0496 PF02405 Permease MlaE EMQ_0497 PF00005 ABC transporter EMQ_0498 PF02470 MlaD protein EMQ_0500 PF08241 Methyltransferase domain EMQ_0501 PF00749 tRNA synthetases class I (E and Q), catalytic domain EMQ_0503 PF02590 Predicted SPOUT methyltransferase EMQ_0505 PF01641 SelR domain EMQ_0507 PF01676 Metalloenzyme superfamily EMQ_0507 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EMQ_0509 PF13180 PDZ domain EMQ_0509 PF03572 Peptidase family S41 EMQ_0511 PF00293 NUDIX domain EMQ_0517 PF13807 G-rich domain on putative tyrosine kinase EMQ_0517 PF02706 Chain length determinant protein EMQ_0517 PF13614 AAA domain EMQ_0518 PF02397 Bacterial sugar transferase EMQ_0521 PF00549 CoA-ligase EMQ_0521 PF02629 CoA binding domain EMQ_0522 PF00549 CoA-ligase EMQ_0522 PF08442 ATP-grasp domain EMQ_0523 PF02801 Beta-ketoacyl synthase, C-terminal domain EMQ_0523 PF00550 Phosphopantetheine attachment site EMQ_0523 PF14765 Polyketide synthase dehydratase EMQ_0523 PF00109 Beta-ketoacyl synthase, N-terminal domain EMQ_0523 PF16197 Ketoacyl-synthetase C-terminal extension EMQ_0523 PF00698 Acyl transferase domain EMQ_0523 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_0523 PF08659 KR domain EMQ_0524 PF12697 Alpha/beta hydrolase family EMQ_0526 PF04293 SpoVR like protein EMQ_0527 PF04285 Protein of unknown function (DUF444) EMQ_0528 PF08298 PrkA AAA domain EMQ_0528 PF06798 PrkA serine protein kinase C-terminal domain EMQ_0530 PF01026 TatD related DNase EMQ_0531 PF09334 tRNA synthetases class I (M) EMQ_0532 PF09115 DNA polymerase III, delta subunit, C terminal EMQ_0533 PF02223 Thymidylate kinase EMQ_0534 PF07943 Penicillin-binding protein 5, C-terminal domain EMQ_0534 PF00768 D-alanyl-D-alanine carboxypeptidase EMQ_0535 PF03330 Lytic transglycolase EMQ_0535 PF05036 Sporulation related domain EMQ_0536 PF13406 Transglycosylase SLT domain EMQ_0538 PF09335 SNARE associated Golgi protein EMQ_0541 PF02673 Bacitracin resistance protein BacA EMQ_0542 PF13520 Amino acid permease EMQ_0545 PF14698 Argininosuccinate lyase C-terminal EMQ_0545 PF00206 Lyase EMQ_0546 PF00578 AhpC/TSA family EMQ_0547 PF03459 TOBE domain EMQ_0548 PF00133 tRNA synthetases class I (I, L, M and V) EMQ_0548 PF06827 Zinc finger found in FPG and IleRS EMQ_0548 PF08264 Anticodon-binding domain of tRNA EMQ_0549 PF01252 Signal peptidase (SPase) II EMQ_0552 PF00324 Amino acid permease EMQ_0553 PF09856 Predicted transcriptional regulator (DUF2083) EMQ_0553 PF06114 IrrE N-terminal-like domain EMQ_0553 PF01381 Helix-turn-helix EMQ_0554 PF00463 Isocitrate lyase family EMQ_0555 PF01274 Malate synthase EMQ_0557 PF04172 LrgB-like family EMQ_0559 PF01741 Large-conductance mechanosensitive channel, MscL EMQ_0560 PF01197 Ribosomal protein L31 EMQ_0564 PF00731 AIR carboxylase EMQ_0565 PF02222 ATP-grasp domain EMQ_0565 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EMQ_0566 PF00005 ABC transporter EMQ_0567 PF01061 ABC-2 type transporter EMQ_0568 PF00293 NUDIX domain EMQ_0569 PF05977 Transmembrane secretion effector EMQ_0570 PF00156 Phosphoribosyl transferase domain EMQ_0571 PF13580 SIS domain EMQ_0572 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_0585 PF01722 BolA-like protein EMQ_0586 PF01556 DnaJ C terminal domain EMQ_0586 PF00684 DnaJ central domain EMQ_0586 PF00226 DnaJ domain EMQ_0587 PF08406 CbbQ/NirQ/NorQ C-terminal EMQ_0587 PF12556 Cobaltochelatase CobS subunit N terminal EMQ_0587 PF07728 AAA domain (dynein-related subfamily) EMQ_0588 PF06213 Cobalamin biosynthesis protein CobT EMQ_0588 PF11775 Cobalamin biosynthesis protein CobT VWA domain EMQ_0589 PF00282 Pyridoxal-dependent decarboxylase conserved domain EMQ_0590 PF00561 alpha/beta hydrolase fold EMQ_0592 PF14403 Circularly permuted ATP-grasp type 2 EMQ_0594 PF04002 RadC-like JAB domain EMQ_0595 PF00027 Cyclic nucleotide-binding domain EMQ_0595 PF13545 Crp-like helix-turn-helix domain EMQ_0596 PF01063 Amino-transferase class IV EMQ_0597 PF13419 Haloacid dehalogenase-like hydrolase EMQ_0601 PF00459 Inositol monophosphatase family EMQ_0603 PF00892 EamA-like transporter family EMQ_0604 PF01380 SIS domain EMQ_0605 PF12804 MobA-like NTP transferase domain EMQ_0605 PF00132 Bacterial transferase hexapeptide (six repeats) EMQ_0605 PF14602 Hexapeptide repeat of succinyl-transferase EMQ_0606 PF13419 Haloacid dehalogenase-like hydrolase EMQ_0607 PF07690 Major Facilitator Superfamily EMQ_0610 PF13277 YmdB-like protein EMQ_0611 PF01812 5-formyltetrahydrofolate cyclo-ligase family EMQ_0615 PF02581 Thiamine monophosphate synthase EMQ_0616 PF02910 Fumarate reductase flavoprotein C-term EMQ_0616 PF00890 FAD binding domain EMQ_0618 PF00484 Carbonic anhydrase EMQ_0620 PF01841 Transglutaminase-like superfamily EMQ_0620 PF08379 Bacterial transglutaminase-like N-terminal region EMQ_0621 PF14403 Circularly permuted ATP-grasp type 2 EMQ_0621 PF04168 A predicted alpha-helical domain with a conserved ER motif. EMQ_0622 PF15887 Putative zinc-binding metallo-peptidase EMQ_0622 PF10005 zinc-ribbon domain EMQ_0627 PF13360 PQQ-like domain EMQ_0631 PF03023 Lipid II flippase MurJ EMQ_0636 PF02699 Preprotein translocase subunit EMQ_0638 PF00355 Rieske [2Fe-2S] domain EMQ_0639 PF00293 NUDIX domain EMQ_0640 PF02464 Competence-damaged protein EMQ_0640 PF18146 Damage-inducible protein CinA KH domain EMQ_0640 PF00994 Probable molybdopterin binding domain EMQ_0641 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EMQ_0642 PF02899 Phage integrase, N-terminal SAM-like domain EMQ_0642 PF00589 Phage integrase family EMQ_0644 PF01761 3-dehydroquinate synthase EMQ_0645 PF00691 OmpA family EMQ_0647 PF02272 DHHA1 domain EMQ_0647 PF01411 tRNA synthetases class II (A) EMQ_0647 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EMQ_0650 PF00152 tRNA synthetases class II (D, K and N) EMQ_0651 PF04055 Radical SAM superfamily EMQ_0651 PF12544 Lysine-2,3-aminomutase EMQ_0653 PF13462 Thioredoxin EMQ_0654 PF02463 RecF/RecN/SMC N terminal domain EMQ_0656 PF00118 TCP-1/cpn60 chaperonin family EMQ_0657 PF00166 Chaperonin 10 Kd subunit EMQ_0658 PF03466 LysR substrate binding domain EMQ_0658 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0660 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EMQ_0663 PF07690 Major Facilitator Superfamily EMQ_0664 PF00132 Bacterial transferase hexapeptide (six repeats) EMQ_0664 PF06426 Serine acetyltransferase, N-terminal EMQ_0665 PF00809 Pterin binding enzyme EMQ_0666 PF01434 Peptidase family M41 EMQ_0666 PF06480 FtsH Extracellular EMQ_0666 PF17862 AAA+ lid domain EMQ_0666 PF00004 ATPase family associated with various cellular activities (AAA) EMQ_0667 PF01171 PP-loop family EMQ_0669 PF00691 OmpA family EMQ_0670 PF04052 TolB amino-terminal domain EMQ_0670 PF07676 WD40-like Beta Propeller Repeat EMQ_0672 PF02472 Biopolymer transport protein ExbD/TolR EMQ_0673 PF01618 MotA/TolQ/ExbB proton channel family EMQ_0674 PF03061 Thioesterase superfamily EMQ_0675 PF05496 Holliday junction DNA helicase RuvB P-loop domain EMQ_0675 PF05491 RuvB C-terminal winged helix domain EMQ_0675 PF17864 RuvB AAA lid domain EMQ_0676 PF01330 RuvA N terminal domain EMQ_0676 PF07499 RuvA, C-terminal domain EMQ_0677 PF02075 Crossover junction endodeoxyribonuclease RuvC EMQ_0680 PF03061 Thioesterase superfamily EMQ_0682 PF02595 Glycerate kinase family EMQ_0683 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EMQ_0683 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EMQ_0684 PF00149 Calcineurin-like phosphoesterase EMQ_0685 PF02153 Prephenate dehydrogenase EMQ_0685 PF01817 Chorismate mutase type II EMQ_0687 PF00285 Citrate synthase, C-terminal domain EMQ_0695 PF03958 Bacterial type II/III secretion system short domain EMQ_0695 PF00263 Bacterial type II and III secretion system protein EMQ_0698 PF00156 Phosphoribosyl transferase domain EMQ_0699 PF01177 Asp/Glu/Hydantoin racemase EMQ_0700 PF00348 Polyprenyl synthetase EMQ_0703 PF00210 Ferritin-like domain EMQ_0705 PF00444 Ribosomal protein L36 EMQ_0707 PF03466 LysR substrate binding domain EMQ_0707 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0708 PF00578 AhpC/TSA family EMQ_0709 PF02627 Carboxymuconolactone decarboxylase family EMQ_0711 PF01926 50S ribosome-binding GTPase EMQ_0711 PF13167 GTP-binding GTPase N-terminal EMQ_0711 PF16360 GTP-binding GTPase Middle Region EMQ_0712 PF17209 Hfq protein EMQ_0713 PF02954 Bacterial regulatory protein, Fis family EMQ_0713 PF00072 Response regulator receiver domain EMQ_0713 PF00158 Sigma-54 interaction domain EMQ_0714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_0714 PF00672 HAMP domain EMQ_0715 PF00158 Sigma-54 interaction domain EMQ_0715 PF00072 Response regulator receiver domain EMQ_0715 PF02954 Bacterial regulatory protein, Fis family EMQ_0716 PF00989 PAS fold EMQ_0716 PF00512 His Kinase A (phospho-acceptor) domain EMQ_0716 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_0717 PF01207 Dihydrouridine synthase (Dus) EMQ_0718 PF00999 Sodium/hydrogen exchanger family EMQ_0721 PF00692 dUTPase EMQ_0722 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EMQ_0723 PF07859 alpha/beta hydrolase fold EMQ_0728 PF02321 Outer membrane efflux protein EMQ_0729 PF00873 AcrB/AcrD/AcrF family EMQ_0730 PF00529 HlyD membrane-fusion protein of T1SS EMQ_0730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EMQ_0732 PF00535 Glycosyl transferase family 2 EMQ_0734 PF01053 Cys/Met metabolism PLP-dependent enzyme EMQ_0735 PF04379 ApaG domain EMQ_0736 PF01227 GTP cyclohydrolase I EMQ_0738 PF00204 DNA gyrase B EMQ_0738 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_0738 PF00986 DNA gyrase B subunit, carboxyl terminus EMQ_0738 PF01751 Toprim domain EMQ_0741 PF02082 Transcriptional regulator EMQ_0742 PF00291 Pyridoxal-phosphate dependent enzyme EMQ_0743 PF00691 OmpA family EMQ_0745 PF03572 Peptidase family S41 EMQ_0745 PF13180 PDZ domain EMQ_0746 PF08206 Ribonuclease B OB domain EMQ_0746 PF00773 RNB domain EMQ_0746 PF08461 Ribonuclease R winged-helix domain EMQ_0746 PF17876 Cold shock domain EMQ_0746 PF00575 S1 RNA binding domain EMQ_0747 PF01131 DNA topoisomerase EMQ_0747 PF01751 Toprim domain EMQ_0747 PF01396 Topoisomerase DNA binding C4 zinc finger EMQ_0747 PF13368 Topoisomerase C-terminal repeat EMQ_0748 PF02481 DNA recombination-mediator protein A EMQ_0748 PF17782 DprA winged helix domain EMQ_0749 PF02660 Glycerol-3-phosphate acyltransferase EMQ_0750 PF01979 Amidohydrolase family EMQ_0751 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EMQ_0751 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EMQ_0752 PF00749 tRNA synthetases class I (E and Q), catalytic domain EMQ_0753 PF04632 Fusaric acid resistance protein family EMQ_0754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0754 PF03466 LysR substrate binding domain EMQ_0759 PF00474 Sodium:solute symporter family EMQ_0761 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EMQ_0762 PF17854 FtsK alpha domain EMQ_0762 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EMQ_0762 PF09397 Ftsk gamma domain EMQ_0762 PF01580 FtsK/SpoIIIE family EMQ_0763 PF00849 RNA pseudouridylate synthase EMQ_0765 PF01266 FAD dependent oxidoreductase EMQ_0767 PF05690 Thiazole biosynthesis protein ThiG EMQ_0768 PF02581 Thiamine monophosphate synthase EMQ_0774 PF06114 IrrE N-terminal-like domain EMQ_0774 PF09856 Predicted transcriptional regulator (DUF2083) EMQ_0774 PF01381 Helix-turn-helix EMQ_0775 PF03972 MmgE/PrpD family EMQ_0776 PF00285 Citrate synthase, C-terminal domain EMQ_0778 PF13193 AMP-binding enzyme C-terminal domain EMQ_0778 PF00501 AMP-binding enzyme EMQ_0778 PF16177 Acetyl-coenzyme A synthetase N-terminus EMQ_0782 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EMQ_0783 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EMQ_0786 PF07715 TonB-dependent Receptor Plug Domain EMQ_0786 PF00593 TonB dependent receptor EMQ_0788 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EMQ_0789 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EMQ_0790 PF00206 Lyase EMQ_0790 PF10415 Fumarase C C-terminus EMQ_0792 PF01011 PQQ enzyme repeat EMQ_0793 PF07690 Major Facilitator Superfamily EMQ_0795 PF00083 Sugar (and other) transporter EMQ_0796 PF00893 Small Multidrug Resistance protein EMQ_0797 PF12002 MgsA AAA+ ATPase C terminal EMQ_0797 PF16193 AAA C-terminal domain EMQ_0797 PF00004 ATPase family associated with various cellular activities (AAA) EMQ_0798 PF01479 S4 domain EMQ_0798 PF00849 RNA pseudouridylate synthase EMQ_0804 PF00270 DEAD/DEAH box helicase EMQ_0804 PF00271 Helicase conserved C-terminal domain EMQ_0809 PF02132 RecR protein EMQ_0809 PF13662 Toprim domain EMQ_0810 PF02575 YbaB/EbfC DNA-binding family EMQ_0811 PF12170 DNA polymerase III tau subunit V interacting with alpha EMQ_0811 PF12169 DNA polymerase III subunits gamma and tau domain III EMQ_0811 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EMQ_0812 PF02861 Clp amino terminal domain, pathogenicity island component EMQ_0812 PF10431 C-terminal, D2-small domain, of ClpB protein EMQ_0812 PF07724 AAA domain (Cdc48 subfamily) EMQ_0812 PF00004 ATPase family associated with various cellular activities (AAA) EMQ_0812 PF17871 AAA lid domain EMQ_0813 PF00557 Metallopeptidase family M24 EMQ_0815 PF00764 Arginosuccinate synthase EMQ_0816 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EMQ_0816 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EMQ_0819 PF00579 tRNA synthetases class I (W and Y) EMQ_0820 PF02464 Competence-damaged protein EMQ_0821 PF00924 Mechanosensitive ion channel EMQ_0821 PF05552 Conserved TM helix EMQ_0822 PF00227 Proteasome subunit EMQ_0823 PF00004 ATPase family associated with various cellular activities (AAA) EMQ_0823 PF07724 AAA domain (Cdc48 subfamily) EMQ_0823 PF10431 C-terminal, D2-small domain, of ClpB protein EMQ_0824 PF02657 Fe-S metabolism associated domain EMQ_0826 PF00082 Subtilase family EMQ_0827 PF00512 His Kinase A (phospho-acceptor) domain EMQ_0827 PF08448 PAS fold EMQ_0827 PF13188 PAS domain EMQ_0827 PF00072 Response regulator receiver domain EMQ_0827 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_0828 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_0828 PF08448 PAS fold EMQ_0828 PF08447 PAS fold EMQ_0829 PF01339 CheB methylesterase EMQ_0829 PF00072 Response regulator receiver domain EMQ_0830 PF02541 Ppx/GppA phosphatase family EMQ_0831 PF00491 Arginase family EMQ_0832 PF01774 UreD urease accessory protein EMQ_0833 PF00547 Urease, gamma subunit EMQ_0834 PF00699 Urease beta subunit EMQ_0835 PF00449 Urease alpha-subunit, N-terminal domain EMQ_0835 PF01979 Amidohydrolase family EMQ_0836 PF02814 UreE urease accessory protein, N-terminal domain EMQ_0836 PF05194 UreE urease accessory protein, C-terminal domain EMQ_0837 PF01730 UreF EMQ_0838 PF02492 CobW/HypB/UreG, nucleotide-binding domain EMQ_0841 PF03466 LysR substrate binding domain EMQ_0841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0844 PF00005 ABC transporter EMQ_0845 PF00005 ABC transporter EMQ_0845 PF12399 Branched-chain amino acid ATP-binding cassette transporter EMQ_0847 PF02653 Branched-chain amino acid transport system / permease component EMQ_0849 PF00072 Response regulator receiver domain EMQ_0849 PF01627 Hpt domain EMQ_0849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_0849 PF00672 HAMP domain EMQ_0849 PF17149 Periplasmic sensor domain found in signal transduction proteins EMQ_0849 PF00512 His Kinase A (phospho-acceptor) domain EMQ_0850 PF00072 Response regulator receiver domain EMQ_0850 PF00486 Transcriptional regulatory protein, C terminal EMQ_0851 PF17764 3′ DNA-binding domain (3′BD) EMQ_0851 PF18074 Primosomal protein N C-terminal domain EMQ_0851 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EMQ_0851 PF00270 DEAD/DEAH box helicase EMQ_0852 PF00589 Phage integrase family EMQ_0852 PF02899 Phage integrase, N-terminal SAM-like domain EMQ_0853 PF00561 alpha/beta hydrolase fold EMQ_0855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EMQ_0858 PF00107 Zinc-binding dehydrogenase EMQ_0858 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_0860 PF01264 Chorismate synthase EMQ_0862 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EMQ_0862 PF01243 Pyridoxamine 5'-phosphate oxidase EMQ_0864 PF00083 Sugar (and other) transporter EMQ_0865 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EMQ_0865 PF01488 Shikimate / quinate 5-dehydrogenase EMQ_0865 PF08501 Shikimate dehydrogenase substrate binding domain EMQ_0866 PF00356 Bacterial regulatory proteins, lacI family EMQ_0868 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0868 PF03466 LysR substrate binding domain EMQ_0869 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EMQ_0870 PF04264 YceI-like domain EMQ_0872 PF00795 Carbon-nitrogen hydrolase EMQ_0878 PF17757 UvrB interaction domain EMQ_0878 PF00271 Helicase conserved C-terminal domain EMQ_0878 PF03461 TRCF domain EMQ_0878 PF02559 CarD-like/TRCF domain EMQ_0878 PF00270 DEAD/DEAH box helicase EMQ_0879 PF03937 Flavinator of succinate dehydrogenase EMQ_0880 PF00270 DEAD/DEAH box helicase EMQ_0880 PF00271 Helicase conserved C-terminal domain EMQ_0880 PF17191 RecG wedge domain EMQ_0881 PF13188 PAS domain EMQ_0881 PF00563 EAL domain EMQ_0881 PF00990 Diguanylate cyclase, GGDEF domain EMQ_0881 PF03707 Bacterial signalling protein N terminal repeat EMQ_0883 PF17757 UvrB interaction domain EMQ_0883 PF12344 Ultra-violet resistance protein B EMQ_0883 PF02151 UvrB/uvrC motif EMQ_0883 PF04851 Type III restriction enzyme, res subunit EMQ_0883 PF00271 Helicase conserved C-terminal domain EMQ_0884 PF10150 Ribonuclease E/G family EMQ_0884 PF12111 Polyribonucleotide phosphorylase C terminal EMQ_0884 PF00575 S1 RNA binding domain EMQ_0885 PF01520 N-acetylmuramoyl-L-alanine amidase EMQ_0885 PF11741 AMIN domain EMQ_0889 PF00753 Metallo-beta-lactamase superfamily EMQ_0890 PF01925 Sulfite exporter TauE/SafE EMQ_0892 PF00990 Diguanylate cyclase, GGDEF domain EMQ_0893 PF03462 PCRF domain EMQ_0893 PF00472 RF-1 domain EMQ_0894 PF03129 Anticodon binding domain EMQ_0894 PF13393 Histidyl-tRNA synthetase EMQ_0895 PF04551 GcpE protein EMQ_0897 PF03060 Nitronate monooxygenase EMQ_0898 PF13840 ACT domain EMQ_0898 PF00696 Amino acid kinase family EMQ_0898 PF01842 ACT domain EMQ_0899 PF08241 Methyltransferase domain EMQ_0901 PF01281 Ribosomal protein L9, N-terminal domain EMQ_0901 PF03948 Ribosomal protein L9, C-terminal domain EMQ_0902 PF01084 Ribosomal protein S18 EMQ_0903 PF01250 Ribosomal protein S6 EMQ_0905 PF03979 Sigma-70 factor, region 1.1 EMQ_0905 PF04539 Sigma-70 region 3 EMQ_0905 PF04542 Sigma-70 region 2 EMQ_0905 PF00140 Sigma-70 factor, region 1.2 EMQ_0905 PF04546 Sigma-70, non-essential region EMQ_0905 PF04545 Sigma-70, region 4 EMQ_0906 PF08275 DNA primase catalytic core, N-terminal domain EMQ_0906 PF01807 CHC2 zinc finger EMQ_0906 PF10410 DnaB-helicase binding domain of primase EMQ_0906 PF08278 DNA primase DnaG DnaB-binding EMQ_0907 PF09424 Yqey-like protein EMQ_0908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_0908 PF03466 LysR substrate binding domain EMQ_0909 PF00491 Arginase family EMQ_0910 PF00491 Arginase family EMQ_0911 PF02633 Creatinine amidohydrolase EMQ_0914 PF00005 ABC transporter EMQ_0915 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_0917 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EMQ_0917 PF00117 Glutamine amidotransferase class-I EMQ_0919 PF02142 MGS-like domain EMQ_0919 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EMQ_0919 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EMQ_0920 PF01272 Transcription elongation factor, GreA/GreB, C-term EMQ_0920 PF03449 Transcription elongation factor, N-terminal EMQ_0921 PF00291 Pyridoxal-phosphate dependent enzyme EMQ_0921 PF13291 ACT domain EMQ_0924 PF01467 Cytidylyltransferase-like EMQ_0925 PF00171 Aldehyde dehydrogenase family EMQ_0926 PF01926 50S ribosome-binding GTPase EMQ_0926 PF06071 Protein of unknown function (DUF933) EMQ_0927 PF01195 Peptidyl-tRNA hydrolase EMQ_0928 PF01386 Ribosomal L25p family EMQ_0928 PF14693 Ribosomal protein TL5, C-terminal domain EMQ_0932 PF04085 rod shape-determining protein MreC EMQ_0934 PF03717 Penicillin-binding Protein dimerisation domain EMQ_0934 PF00905 Penicillin binding protein transpeptidase domain EMQ_0935 PF01098 Cell cycle protein EMQ_0937 PF00226 DnaJ domain EMQ_0937 PF01556 DnaJ C terminal domain EMQ_0937 PF00684 DnaJ central domain EMQ_0939 PF00999 Sodium/hydrogen exchanger family EMQ_0941 PF02938 GAD domain EMQ_0941 PF01336 OB-fold nucleic acid binding domain EMQ_0941 PF00152 tRNA synthetases class II (D, K and N) EMQ_0942 PF02913 FAD linked oxidases, C-terminal domain EMQ_0942 PF01565 FAD binding domain EMQ_0943 PF00881 Nitroreductase family EMQ_0944 PF01943 Polysaccharide biosynthesis protein EMQ_0945 PF03144 Elongation factor Tu domain 2 EMQ_0945 PF00009 Elongation factor Tu GTP binding domain EMQ_0945 PF06421 GTP-binding protein LepA C-terminus EMQ_0945 PF00679 Elongation factor G C-terminus EMQ_0947 PF03109 ABC1 family EMQ_0949 PF08448 PAS fold EMQ_0949 PF08447 PAS fold EMQ_0949 PF00990 Diguanylate cyclase, GGDEF domain EMQ_0949 PF00563 EAL domain EMQ_0950 PF03358 NADPH-dependent FMN reductase EMQ_0951 PF03880 DbpA RNA binding domain EMQ_0951 PF00271 Helicase conserved C-terminal domain EMQ_0951 PF00270 DEAD/DEAH box helicase EMQ_0953 PF01678 Diaminopimelate epimerase EMQ_0954 PF00919 Uncharacterized protein family UPF0004 EMQ_0954 PF04055 Radical SAM superfamily EMQ_0955 PF00448 SRP54-type protein, GTPase domain EMQ_0955 PF02881 SRP54-type protein, helical bundle domain EMQ_0959 PF07559 Flagellar basal body protein FlaE EMQ_0959 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EMQ_0959 PF00460 Flagella basal body rod protein EMQ_0963 PF01554 MatE EMQ_0965 PF00326 Prolyl oligopeptidase family EMQ_0965 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EMQ_0967 PF00248 Aldo/keto reductase family EMQ_0968 PF17773 UPF0176 acylphosphatase like domain EMQ_0968 PF00581 Rhodanese-like domain EMQ_0969 PF00005 ABC transporter EMQ_0972 PF00578 AhpC/TSA family EMQ_0974 PF04055 Radical SAM superfamily EMQ_0974 PF06969 HemN C-terminal domain EMQ_0975 PF02705 K+ potassium transporter EMQ_0976 PF01168 Alanine racemase, N-terminal domain EMQ_0980 PF01634 ATP phosphoribosyltransferase EMQ_0981 PF00815 Histidinol dehydrogenase EMQ_0982 PF01176 Translation initiation factor 1A / IF-1 EMQ_0983 PF02545 Maf-like protein EMQ_0985 PF03884 DNA gyrase inhibitor YacG EMQ_0986 PF01967 MoaC family EMQ_0987 PF00032 Cytochrome b(C-terminal)/b6/petD EMQ_0987 PF00033 Cytochrome b/b6/petB EMQ_0988 PF02167 Cytochrome C1 family EMQ_0989 PF00355 Rieske [2Fe-2S] domain EMQ_0989 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EMQ_0991 PF07690 Major Facilitator Superfamily EMQ_0992 PF00111 2Fe-2S iron-sulfur cluster binding domain EMQ_0992 PF01799 [2Fe-2S] binding domain EMQ_0993 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EMQ_0994 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EMQ_0994 PF00034 Cytochrome c EMQ_0994 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EMQ_0995 PF00578 AhpC/TSA family EMQ_0999 PF02975 Methylamine dehydrogenase, L chain EMQ_1000 PF00578 AhpC/TSA family EMQ_1001 PF07291 Methylamine utilisation protein MauE EMQ_1004 PF00490 Delta-aminolevulinic acid dehydratase EMQ_1006 PF04376 Arginine-tRNA-protein transferase, N terminus EMQ_1006 PF04377 Arginine-tRNA-protein transferase, C terminus EMQ_1007 PF00072 Response regulator receiver domain EMQ_1007 PF00486 Transcriptional regulatory protein, C terminal EMQ_1008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_1008 PF00512 His Kinase A (phospho-acceptor) domain EMQ_1012 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EMQ_1014 PF00483 Nucleotidyl transferase EMQ_1017 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_1024 PF00994 Probable molybdopterin binding domain EMQ_1025 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EMQ_1025 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EMQ_1026 PF03631 Virulence factor BrkB EMQ_1027 PF03330 Lytic transglycolase EMQ_1027 PF05036 Sporulation related domain EMQ_1028 PF01220 Dehydroquinase class II EMQ_1029 PF00364 Biotin-requiring enzyme EMQ_1030 PF02785 Biotin carboxylase C-terminal domain EMQ_1030 PF00289 Biotin carboxylase, N-terminal domain EMQ_1030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EMQ_1031 PF02142 MGS-like domain EMQ_1031 PF01808 AICARFT/IMPCHase bienzyme EMQ_1033 PF10127 RNA repair pathway DNA polymerase beta family EMQ_1034 PF02390 Putative methyltransferase EMQ_1035 PF02772 S-adenosylmethionine synthetase, central domain EMQ_1035 PF02773 S-adenosylmethionine synthetase, C-terminal domain EMQ_1035 PF00438 S-adenosylmethionine synthetase, N-terminal domain EMQ_1036 PF05173 Dihydrodipicolinate reductase, C-terminus EMQ_1036 PF01113 Dihydrodipicolinate reductase, N-terminus EMQ_1037 PF13396 Phospholipase_D-nuclease N-terminal EMQ_1037 PF13091 PLD-like domain EMQ_1039 PF02021 Uncharacterised protein family UPF0102 EMQ_1041 PF00462 Glutaredoxin EMQ_1042 PF01722 BolA-like protein EMQ_1043 PF00586 AIR synthase related protein, N-terminal domain EMQ_1043 PF02769 AIR synthase related protein, C-terminal domain EMQ_1043 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EMQ_1046 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase EMQ_1047 PF01259 SAICAR synthetase EMQ_1048 PF12464 Maltose acetyltransferase EMQ_1048 PF14602 Hexapeptide repeat of succinyl-transferase EMQ_1049 PF00206 Lyase EMQ_1049 PF10397 Adenylosuccinate lyase C-terminus EMQ_1050 PF07715 TonB-dependent Receptor Plug Domain EMQ_1050 PF00593 TonB dependent receptor EMQ_1051 PF00296 Luciferase-like monooxygenase EMQ_1053 PF07859 alpha/beta hydrolase fold EMQ_1054 PF02381 MraZ protein, putative antitoxin-like EMQ_1055 PF01795 MraW methylase family EMQ_1057 PF00905 Penicillin binding protein transpeptidase domain EMQ_1057 PF03717 Penicillin-binding Protein dimerisation domain EMQ_1058 PF02875 Mur ligase family, glutamate ligase domain EMQ_1058 PF01225 Mur ligase family, catalytic domain EMQ_1058 PF08245 Mur ligase middle domain EMQ_1059 PF08245 Mur ligase middle domain EMQ_1059 PF02875 Mur ligase family, glutamate ligase domain EMQ_1059 PF01225 Mur ligase family, catalytic domain EMQ_1060 PF00953 Glycosyl transferase family 4 EMQ_1060 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EMQ_1061 PF02875 Mur ligase family, glutamate ligase domain EMQ_1061 PF08245 Mur ligase middle domain EMQ_1062 PF01098 Cell cycle protein EMQ_1063 PF03033 Glycosyltransferase family 28 N-terminal domain EMQ_1063 PF04101 Glycosyltransferase family 28 C-terminal domain EMQ_1064 PF01225 Mur ligase family, catalytic domain EMQ_1064 PF08245 Mur ligase middle domain EMQ_1064 PF02875 Mur ligase family, glutamate ligase domain EMQ_1065 PF01565 FAD binding domain EMQ_1065 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EMQ_1066 PF01820 D-ala D-ala ligase N-terminus EMQ_1066 PF07478 D-ala D-ala ligase C-terminus EMQ_1067 PF03799 Cell division protein FtsQ EMQ_1067 PF08478 POTRA domain, FtsQ-type EMQ_1068 PF02491 SHS2 domain inserted in FTSA EMQ_1069 PF00091 Tubulin/FtsZ family, GTPase domain EMQ_1069 PF12327 FtsZ family, C-terminal domain EMQ_1070 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EMQ_1071 PF13525 Outer membrane lipoprotein EMQ_1072 PF02463 RecF/RecN/SMC N terminal domain EMQ_1073 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EMQ_1073 PF03120 NAD-dependent DNA ligase OB-fold domain EMQ_1073 PF00533 BRCA1 C Terminus (BRCT) domain EMQ_1073 PF12826 Helix-hairpin-helix motif EMQ_1073 PF01653 NAD-dependent DNA ligase adenylation domain EMQ_1074 PF00391 PEP-utilising enzyme, mobile domain EMQ_1074 PF02896 PEP-utilising enzyme, TIM barrel domain EMQ_1074 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EMQ_1075 PF03618 Kinase/pyrophosphorylase EMQ_1078 PF01474 Class-II DAHP synthetase family EMQ_1080 PF01636 Phosphotransferase enzyme family EMQ_1081 PF00202 Aminotransferase class-III EMQ_1083 PF02074 Carboxypeptidase Taq (M32) metallopeptidase EMQ_1085 PF13532 2OG-Fe(II) oxygenase superfamily EMQ_1089 PF01327 Polypeptide deformylase EMQ_1090 PF02911 Formyl transferase, C-terminal domain EMQ_1090 PF00551 Formyl transferase EMQ_1091 PF01416 tRNA pseudouridine synthase EMQ_1098 PF07690 Major Facilitator Superfamily EMQ_1099 PF04261 Dyp-type peroxidase family EMQ_1100 PF04454 Encapsulating protein for peroxidase EMQ_1102 PF00155 Aminotransferase class I and II EMQ_1102 PF00392 Bacterial regulatory proteins, gntR family EMQ_1105 PF09370 Phosphoenolpyruvate hydrolase-like EMQ_1107 PF00881 Nitroreductase family EMQ_1108 PF00230 Major intrinsic protein EMQ_1111 PF01979 Amidohydrolase family EMQ_1111 PF13382 Adenine deaminase C-terminal domain EMQ_1112 PF00248 Aldo/keto reductase family EMQ_1123 PF00011 Hsp20/alpha crystallin family EMQ_1126 PF00535 Glycosyl transferase family 2 EMQ_1128 PF04002 RadC-like JAB domain EMQ_1129 PF07690 Major Facilitator Superfamily EMQ_1130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EMQ_1130 PF00529 HlyD membrane-fusion protein of T1SS EMQ_1133 PF01312 FlhB HrpN YscU SpaS Family EMQ_1135 PF01313 Bacterial export proteins, family 3 EMQ_1136 PF02049 Flagellar hook-basal body complex protein FliE EMQ_1137 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EMQ_1138 PF00460 Flagella basal body rod protein EMQ_1140 PF00813 FliP family EMQ_1141 PF00005 ABC transporter EMQ_1142 PF02687 FtsX-like permease family EMQ_1142 PF12704 MacB-like periplasmic core domain EMQ_1143 PF03129 Anticodon binding domain EMQ_1143 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EMQ_1144 PF07687 Peptidase dimerisation domain EMQ_1144 PF01546 Peptidase family M20/M25/M40 EMQ_1145 PF01180 Dihydroorotate dehydrogenase EMQ_1146 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EMQ_1146 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_1149 PF01979 Amidohydrolase family EMQ_1150 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EMQ_1152 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EMQ_1152 PF12706 Beta-lactamase superfamily domain EMQ_1152 PF17770 Ribonuclease J C-terminal domain EMQ_1153 PF03309 Type III pantothenate kinase EMQ_1154 PF03099 Biotin/lipoate A/B protein ligase family EMQ_1154 PF02237 Biotin protein ligase C terminal domain EMQ_1155 PF00361 Proton-conducting membrane transporter EMQ_1156 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EMQ_1156 PF00361 Proton-conducting membrane transporter EMQ_1157 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EMQ_1158 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EMQ_1159 PF12838 4Fe-4S dicluster domain EMQ_1160 PF00146 NADH dehydrogenase EMQ_1161 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EMQ_1161 PF00384 Molybdopterin oxidoreductase EMQ_1161 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal EMQ_1162 PF10531 SLBB domain EMQ_1162 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EMQ_1162 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EMQ_1164 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EMQ_1165 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EMQ_1166 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EMQ_1167 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EMQ_1168 PF00216 Bacterial DNA-binding protein EMQ_1169 PF05362 Lon protease (S16) C-terminal proteolytic domain EMQ_1169 PF00004 ATPase family associated with various cellular activities (AAA) EMQ_1169 PF02190 ATP-dependent protease La (LON) substrate-binding domain EMQ_1170 PF07724 AAA domain (Cdc48 subfamily) EMQ_1170 PF10431 C-terminal, D2-small domain, of ClpB protein EMQ_1170 PF06689 ClpX C4-type zinc finger EMQ_1171 PF00574 Clp protease EMQ_1172 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EMQ_1172 PF05698 Bacterial trigger factor protein (TF) C-terminus EMQ_1172 PF05697 Bacterial trigger factor protein (TF) EMQ_1173 PF03853 YjeF-related protein N-terminus EMQ_1173 PF01256 Carbohydrate kinase EMQ_1175 PF00271 Helicase conserved C-terminal domain EMQ_1175 PF00270 DEAD/DEAH box helicase EMQ_1176 PF05958 tRNA (Uracil-5-)-methyltransferase EMQ_1179 PF00034 Cytochrome c EMQ_1179 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EMQ_1180 PF05199 GMC oxidoreductase EMQ_1180 PF00732 GMC oxidoreductase EMQ_1182 PF07690 Major Facilitator Superfamily EMQ_1186 PF01012 Electron transfer flavoprotein domain EMQ_1187 PF00766 Electron transfer flavoprotein FAD-binding domain EMQ_1187 PF01012 Electron transfer flavoprotein domain EMQ_1188 PF03707 Bacterial signalling protein N terminal repeat EMQ_1188 PF00563 EAL domain EMQ_1188 PF00990 Diguanylate cyclase, GGDEF domain EMQ_1189 PF01636 Phosphotransferase enzyme family EMQ_1192 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EMQ_1193 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EMQ_1195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EMQ_1195 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EMQ_1196 PF00923 Transaldolase/Fructose-6-phosphate aldolase EMQ_1197 PF00456 Transketolase, thiamine diphosphate binding domain EMQ_1197 PF02779 Transketolase, pyrimidine binding domain EMQ_1197 PF02780 Transketolase, C-terminal domain EMQ_1198 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EMQ_1198 PF02843 Phosphoribosylglycinamide synthetase, C domain EMQ_1198 PF02844 Phosphoribosylglycinamide synthetase, N domain EMQ_1199 PF02601 Exonuclease VII, large subunit EMQ_1199 PF13742 OB-fold nucleic acid binding domain EMQ_1201 PF01557 Fumarylacetoacetate (FAA) hydrolase family EMQ_1202 PF00535 Glycosyl transferase family 2 EMQ_1204 PF13249 Squalene-hopene cyclase N-terminal domain EMQ_1204 PF13243 Squalene-hopene cyclase C-terminal domain EMQ_1205 PF01593 Flavin containing amine oxidoreductase EMQ_1208 PF00293 NUDIX domain EMQ_1210 PF01370 NAD dependent epimerase/dehydratase family EMQ_1212 PF02153 Prephenate dehydrogenase EMQ_1215 PF08032 RNA 2'-O ribose methyltransferase substrate binding EMQ_1215 PF00588 SpoU rRNA Methylase family EMQ_1217 PF01040 UbiA prenyltransferase family EMQ_1219 PF01209 ubiE/COQ5 methyltransferase family EMQ_1220 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EMQ_1220 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EMQ_1221 PF03449 Transcription elongation factor, N-terminal EMQ_1221 PF01272 Transcription elongation factor, GreA/GreB, C-term EMQ_1222 PF01618 MotA/TolQ/ExbB proton channel family EMQ_1223 PF13677 Membrane MotB of proton-channel complex MotA/MotB EMQ_1223 PF00691 OmpA family EMQ_1226 PF01037 Lrp/AsnC ligand binding domain EMQ_1227 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_1228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1228 PF03466 LysR substrate binding domain EMQ_1229 PF02742 Iron dependent repressor, metal binding and dimerisation domain EMQ_1229 PF01325 Iron dependent repressor, N-terminal DNA binding domain EMQ_1230 PF03707 Bacterial signalling protein N terminal repeat EMQ_1230 PF00990 Diguanylate cyclase, GGDEF domain EMQ_1230 PF00563 EAL domain EMQ_1231 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EMQ_1231 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EMQ_1232 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EMQ_1236 PF00873 AcrB/AcrD/AcrF family EMQ_1237 PF05443 ROS/MUCR transcriptional regulator protein EMQ_1238 PF01343 Peptidase family S49 EMQ_1239 PF00216 Bacterial DNA-binding protein EMQ_1241 PF00483 Nucleotidyl transferase EMQ_1241 PF01050 Mannose-6-phosphate isomerase EMQ_1244 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EMQ_1245 PF01632 Ribosomal protein L35 EMQ_1246 PF00453 Ribosomal protein L20 EMQ_1249 PF03061 Thioesterase superfamily EMQ_1250 PF01502 Phosphoribosyl-AMP cyclohydrolase EMQ_1252 PF04055 Radical SAM superfamily EMQ_1253 PF01327 Polypeptide deformylase EMQ_1255 PF01479 S4 domain EMQ_1255 PF01728 FtsJ-like methyltransferase EMQ_1256 PF02779 Transketolase, pyrimidine binding domain EMQ_1256 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EMQ_1256 PF02780 Transketolase, C-terminal domain EMQ_1257 PF00348 Polyprenyl synthetase EMQ_1258 PF02609 Exonuclease VII small subunit EMQ_1259 PF01206 Sulfurtransferase TusA EMQ_1262 PF00480 ROK family EMQ_1263 PF11799 impB/mucB/samB family C-terminal domain EMQ_1263 PF00817 impB/mucB/samB family EMQ_1264 PF01521 Iron-sulphur cluster biosynthesis EMQ_1265 PF01883 Iron-sulfur cluster assembly protein EMQ_1267 PF00266 Aminotransferase class-V EMQ_1268 PF01458 Uncharacterized protein family (UPF0051) EMQ_1269 PF00005 ABC transporter EMQ_1270 PF01458 Uncharacterized protein family (UPF0051) EMQ_1271 PF02082 Transcriptional regulator EMQ_1273 PF04286 Protein of unknown function (DUF445) EMQ_1276 PF00171 Aldehyde dehydrogenase family EMQ_1277 PF00155 Aminotransferase class I and II EMQ_1279 PF00456 Transketolase, thiamine diphosphate binding domain EMQ_1279 PF02779 Transketolase, pyrimidine binding domain EMQ_1279 PF02780 Transketolase, C-terminal domain EMQ_1280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EMQ_1280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EMQ_1281 PF00162 Phosphoglycerate kinase EMQ_1286 PF00486 Transcriptional regulatory protein, C terminal EMQ_1286 PF00072 Response regulator receiver domain EMQ_1287 PF00672 HAMP domain EMQ_1287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_1287 PF00512 His Kinase A (phospho-acceptor) domain EMQ_1293 PF07690 Major Facilitator Superfamily EMQ_1295 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EMQ_1295 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EMQ_1295 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_1295 PF18267 Rubredoxin NAD+ reductase C-terminal domain EMQ_1295 PF04324 BFD-like [2Fe-2S] binding domain EMQ_1295 PF13806 Rieske-like [2Fe-2S] domain EMQ_1296 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EMQ_1296 PF00384 Molybdopterin oxidoreductase EMQ_1296 PF01568 Molydopterin dinucleotide binding domain EMQ_1298 PF00005 ABC transporter EMQ_1301 PF01297 Zinc-uptake complex component A periplasmic EMQ_1302 PF00950 ABC 3 transport family EMQ_1303 PF00005 ABC transporter EMQ_1306 PF03764 Elongation factor G, domain IV EMQ_1306 PF00009 Elongation factor Tu GTP binding domain EMQ_1306 PF03144 Elongation factor Tu domain 2 EMQ_1306 PF14492 Elongation Factor G, domain II EMQ_1306 PF00679 Elongation factor G C-terminus EMQ_1307 PF00830 Ribosomal L28 family EMQ_1309 PF00005 ABC transporter EMQ_1309 PF00664 ABC transporter transmembrane region EMQ_1313 PF08241 Methyltransferase domain EMQ_1313 PF12697 Alpha/beta hydrolase family EMQ_1315 PF00175 Oxidoreductase NAD-binding domain EMQ_1315 PF00111 2Fe-2S iron-sulfur cluster binding domain EMQ_1316 PF00355 Rieske [2Fe-2S] domain EMQ_1317 PF03466 LysR substrate binding domain EMQ_1317 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1319 PF02542 YgbB family EMQ_1319 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EMQ_1321 PF02872 5'-nucleotidase, C-terminal domain EMQ_1321 PF00149 Calcineurin-like phosphoesterase EMQ_1322 PF04107 Glutamate-cysteine ligase family 2(GCS2) EMQ_1324 PF01040 UbiA prenyltransferase family EMQ_1326 PF00270 DEAD/DEAH box helicase EMQ_1326 PF00271 Helicase conserved C-terminal domain EMQ_1327 PF13649 Methyltransferase domain EMQ_1329 PF00155 Aminotransferase class I and II EMQ_1330 PF00202 Aminotransferase class-III EMQ_1331 PF02391 MoaE protein EMQ_1332 PF02597 ThiS family EMQ_1334 PF01066 CDP-alcohol phosphatidyltransferase EMQ_1335 PF08459 UvrC Helix-hairpin-helix N-terminal EMQ_1335 PF02151 UvrB/uvrC motif EMQ_1335 PF01541 GIY-YIG catalytic domain EMQ_1339 PF00155 Aminotransferase class I and II EMQ_1341 PF00486 Transcriptional regulatory protein, C terminal EMQ_1341 PF00072 Response regulator receiver domain EMQ_1346 PF13580 SIS domain EMQ_1347 PF00535 Glycosyl transferase family 2 EMQ_1350 PF00294 pfkB family carbohydrate kinase EMQ_1355 PF00570 HRDC domain EMQ_1355 PF01612 3'-5' exonuclease EMQ_1356 PF14489 QueF-like protein EMQ_1357 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EMQ_1358 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EMQ_1358 PF02874 ATP synthase alpha/beta family, beta-barrel domain EMQ_1359 PF00231 ATP synthase EMQ_1360 PF00306 ATP synthase alpha/beta chain, C terminal domain EMQ_1360 PF02874 ATP synthase alpha/beta family, beta-barrel domain EMQ_1360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EMQ_1361 PF00213 ATP synthase delta (OSCP) subunit EMQ_1362 PF07690 Major Facilitator Superfamily EMQ_1363 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EMQ_1364 PF00467 KOW motif EMQ_1364 PF02357 Transcription termination factor nusG EMQ_1366 PF02774 Semialdehyde dehydrogenase, dimerisation domain EMQ_1366 PF01118 Semialdehyde dehydrogenase, NAD binding domain EMQ_1367 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EMQ_1368 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EMQ_1369 PF00890 FAD binding domain EMQ_1369 PF02910 Fumarate reductase flavoprotein C-term EMQ_1370 PF13085 2Fe-2S iron-sulfur cluster binding domain EMQ_1372 PF01757 Acyltransferase family EMQ_1373 PF08274 PhnA Zinc-Ribbon EMQ_1373 PF03831 PhnA domain EMQ_1374 PF01170 Putative RNA methylase family UPF0020 EMQ_1374 PF02926 THUMP domain EMQ_1374 PF10672 S-adenosylmethionine-dependent methyltransferase EMQ_1375 PF08447 PAS fold EMQ_1375 PF07536 HWE histidine kinase EMQ_1375 PF13426 PAS domain EMQ_1377 PF00005 ABC transporter EMQ_1377 PF12848 ABC transporter EMQ_1377 PF16326 ABC transporter C-terminal domain EMQ_1378 PF03275 UDP-galactopyranose mutase EMQ_1379 PF01594 AI-2E family transporter EMQ_1381 PF07690 Major Facilitator Superfamily EMQ_1383 PF03641 Possible lysine decarboxylase EMQ_1384 PF00557 Metallopeptidase family M24 EMQ_1384 PF01321 Creatinase/Prolidase N-terminal domain EMQ_1385 PF00180 Isocitrate/isopropylmalate dehydrogenase EMQ_1385 PF18324 Hypothetical protein TT1725 EMQ_1404 PF01409 tRNA synthetases class II core domain (F) EMQ_1404 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EMQ_1405 PF01588 Putative tRNA binding domain EMQ_1405 PF03483 B3/4 domain EMQ_1405 PF03484 tRNA synthetase B5 domain EMQ_1405 PF03147 Ferredoxin-fold anticodon binding domain EMQ_1405 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EMQ_1406 PF13393 Histidyl-tRNA synthetase EMQ_1407 PF00709 Adenylosuccinate synthetase EMQ_1411 PF00375 Sodium:dicarboxylate symporter family EMQ_1412 PF02615 Malate/L-lactate dehydrogenase EMQ_1413 PF00360 Phytochrome region EMQ_1413 PF01590 GAF domain EMQ_1413 PF00990 Diguanylate cyclase, GGDEF domain EMQ_1413 PF00563 EAL domain EMQ_1414 PF00012 Hsp70 protein EMQ_1416 PF00291 Pyridoxal-phosphate dependent enzyme EMQ_1416 PF14821 Threonine synthase N terminus EMQ_1417 PF00675 Insulinase (Peptidase family M16) EMQ_1417 PF05193 Peptidase M16 inactive domain EMQ_1418 PF01523 Putative modulator of DNA gyrase EMQ_1420 PF01757 Acyltransferase family EMQ_1421 PF03186 CobD/Cbib protein EMQ_1422 PF00465 Iron-containing alcohol dehydrogenase EMQ_1423 PF01467 Cytidylyltransferase-like EMQ_1423 PF00294 pfkB family carbohydrate kinase EMQ_1424 PF00625 Guanylate kinase EMQ_1425 PF00106 short chain dehydrogenase EMQ_1426 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EMQ_1428 PF14659 Phage integrase, N-terminal SAM-like domain EMQ_1428 PF00589 Phage integrase family EMQ_1428 PF13356 Arm DNA-binding domain EMQ_1434 PF02371 Transposase IS116/IS110/IS902 family EMQ_1434 PF01548 Transposase EMQ_1435 PF02515 CoA-transferase family III EMQ_1437 PF00474 Sodium:solute symporter family EMQ_1439 PF03466 LysR substrate binding domain EMQ_1439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1440 PF18267 Rubredoxin NAD+ reductase C-terminal domain EMQ_1440 PF13806 Rieske-like [2Fe-2S] domain EMQ_1440 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_1440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EMQ_1440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EMQ_1440 PF04324 BFD-like [2Fe-2S] binding domain EMQ_1441 PF00107 Zinc-binding dehydrogenase EMQ_1441 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_1442 PF07859 alpha/beta hydrolase fold EMQ_1449 PF07690 Major Facilitator Superfamily EMQ_1450 PF00394 Multicopper oxidase EMQ_1450 PF07731 Multicopper oxidase EMQ_1450 PF07732 Multicopper oxidase EMQ_1452 PF04945 YHS domain EMQ_1468 PF00005 ABC transporter EMQ_1469 PF00005 ABC transporter EMQ_1470 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_1472 PF01613 Flavin reductase like domain EMQ_1474 PF03466 LysR substrate binding domain EMQ_1474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1475 PF00296 Luciferase-like monooxygenase EMQ_1476 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EMQ_1476 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EMQ_1476 PF01842 ACT domain EMQ_1477 PF00596 Class II Aldolase and Adducin N-terminal domain EMQ_1478 PF05995 Cysteine dioxygenase type I EMQ_1482 PF00005 ABC transporter EMQ_1488 PF00875 DNA photolyase EMQ_1488 PF03441 FAD binding domain of DNA photolyase EMQ_1489 PF17954 Quercetinase C-terminal cupin domain EMQ_1489 PF02678 Pirin EMQ_1496 PF02321 Outer membrane efflux protein EMQ_1497 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EMQ_1497 PF00529 HlyD membrane-fusion protein of T1SS EMQ_1500 PF12802 MarR family EMQ_1505 PF00326 Prolyl oligopeptidase family EMQ_1506 PF09335 SNARE associated Golgi protein EMQ_1508 PF00296 Luciferase-like monooxygenase EMQ_1509 PF01230 HIT domain EMQ_1510 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EMQ_1511 PF00977 Histidine biosynthesis protein EMQ_1512 PF00977 Histidine biosynthesis protein EMQ_1513 PF00117 Glutamine amidotransferase class-I EMQ_1515 PF00475 Imidazoleglycerol-phosphate dehydratase EMQ_1516 PF13188 PAS domain EMQ_1516 PF03707 Bacterial signalling protein N terminal repeat EMQ_1516 PF00990 Diguanylate cyclase, GGDEF domain EMQ_1516 PF00563 EAL domain EMQ_1518 PF02384 N-6 DNA Methylase EMQ_1518 PF12161 HsdM N-terminal domain EMQ_1520 PF18766 SWI2/SNF2 ATPase EMQ_1520 PF11867 Domain of unknown function (DUF3387) EMQ_1520 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EMQ_1523 PF07715 TonB-dependent Receptor Plug Domain EMQ_1523 PF00593 TonB dependent receptor EMQ_1523 PF07660 Secretin and TonB N terminus short domain EMQ_1525 PF00155 Aminotransferase class I and II EMQ_1526 PF13307 Helicase C-terminal domain EMQ_1526 PF04851 Type III restriction enzyme, res subunit EMQ_1528 PF02567 Phenazine biosynthesis-like protein EMQ_1530 PF00465 Iron-containing alcohol dehydrogenase EMQ_1531 PF00083 Sugar (and other) transporter EMQ_1532 PF00171 Aldehyde dehydrogenase family EMQ_1535 PF01546 Peptidase family M20/M25/M40 EMQ_1535 PF07687 Peptidase dimerisation domain EMQ_1537 PF02321 Outer membrane efflux protein EMQ_1538 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EMQ_1539 PF00873 AcrB/AcrD/AcrF family EMQ_1543 PF00464 Serine hydroxymethyltransferase EMQ_1544 PF13520 Amino acid permease EMQ_1545 PF00571 CBS domain EMQ_1545 PF01595 Cyclin M transmembrane N-terminal domain EMQ_1545 PF03471 Transporter associated domain EMQ_1546 PF01119 DNA mismatch repair protein, C-terminal domain EMQ_1546 PF08676 MutL C terminal dimerisation domain EMQ_1547 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EMQ_1548 PF00534 Glycosyl transferases group 1 EMQ_1548 PF13579 Glycosyl transferase 4-like domain EMQ_1550 PF00781 Diacylglycerol kinase catalytic domain EMQ_1551 PF00107 Zinc-binding dehydrogenase EMQ_1551 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_1552 PF03976 Polyphosphate kinase 2 (PPK2) EMQ_1553 PF00106 short chain dehydrogenase EMQ_1554 PF02622 Uncharacterized ACR, COG1678 EMQ_1556 PF07670 Nucleoside recognition EMQ_1556 PF02421 Ferrous iron transport protein B EMQ_1556 PF07664 Ferrous iron transport protein B C terminus EMQ_1558 PF08450 SMP-30/Gluconolactonase/LRE-like region EMQ_1560 PF00009 Elongation factor Tu GTP binding domain EMQ_1560 PF00679 Elongation factor G C-terminus EMQ_1560 PF03144 Elongation factor Tu domain 2 EMQ_1565 PF03352 Methyladenine glycosylase EMQ_1566 PF00180 Isocitrate/isopropylmalate dehydrogenase EMQ_1569 PF04632 Fusaric acid resistance protein family EMQ_1570 PF00156 Phosphoribosyl transferase domain EMQ_1571 PF13188 PAS domain EMQ_1571 PF00072 Response regulator receiver domain EMQ_1571 PF08448 PAS fold EMQ_1571 PF00512 His Kinase A (phospho-acceptor) domain EMQ_1571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_1572 PF07690 Major Facilitator Superfamily EMQ_1575 PF02628 Cytochrome oxidase assembly protein EMQ_1579 PF00665 Integrase core domain EMQ_1579 PF13276 HTH-like domain EMQ_1579 PF13333 Integrase core domain EMQ_1580 PF01527 Transposase EMQ_1584 PF07969 Amidohydrolase family EMQ_1586 PF08544 GHMP kinases C terminal EMQ_1586 PF00288 GHMP kinases N terminal domain EMQ_1590 PF10609 NUBPL iron-transfer P-loop NTPase EMQ_1593 PF01464 Transglycosylase SLT domain EMQ_1593 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain EMQ_1594 PF03167 Uracil DNA glycosylase superfamily EMQ_1598 PF00535 Glycosyl transferase family 2 EMQ_1605 PF00330 Aconitase family (aconitate hydratase) EMQ_1606 PF00694 Aconitase C-terminal domain EMQ_1608 PF00881 Nitroreductase family EMQ_1609 PF03891 Domain of unknown function (DUF333) EMQ_1610 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_1611 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_1612 PF00005 ABC transporter EMQ_1613 PF01895 PhoU domain EMQ_1614 PF00072 Response regulator receiver domain EMQ_1614 PF00486 Transcriptional regulatory protein, C terminal EMQ_1615 PF00989 PAS fold EMQ_1615 PF00512 His Kinase A (phospho-acceptor) domain EMQ_1615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_1615 PF11808 Phosphate regulon sensor protein PhoR EMQ_1616 PF12849 PBP superfamily domain EMQ_1618 PF01245 Ribosomal protein L19 EMQ_1619 PF01746 tRNA (Guanine-1)-methyltransferase EMQ_1620 PF01782 RimM N-terminal domain EMQ_1621 PF00886 Ribosomal protein S16 EMQ_1622 PF02881 SRP54-type protein, helical bundle domain EMQ_1622 PF00448 SRP54-type protein, GTPase domain EMQ_1622 PF02978 Signal peptide binding domain EMQ_1625 PF00171 Aldehyde dehydrogenase family EMQ_1627 PF01521 Iron-sulphur cluster biosynthesis EMQ_1629 PF00543 Nitrogen regulatory protein P-II EMQ_1630 PF01494 FAD binding domain EMQ_1632 PF00155 Aminotransferase class I and II EMQ_1634 PF12706 Beta-lactamase superfamily domain EMQ_1635 PF00202 Aminotransferase class-III EMQ_1636 PF14552 Tautomerase enzyme EMQ_1638 PF06751 Ethanolamine ammonia lyase large subunit (EutB) EMQ_1639 PF05985 Ethanolamine ammonia-lyase light chain (EutC) EMQ_1640 PF13520 Amino acid permease EMQ_1642 PF13286 Phosphohydrolase-associated domain EMQ_1642 PF01966 HD domain EMQ_1644 PF02556 Preprotein translocase subunit SecB EMQ_1646 PF01063 Amino-transferase class IV EMQ_1647 PF00425 chorismate binding enzyme EMQ_1647 PF04715 Anthranilate synthase component I, N terminal region EMQ_1651 PF06258 Mitochondrial fission ELM1 EMQ_1652 PF03952 Enolase, N-terminal domain EMQ_1652 PF00113 Enolase, C-terminal TIM barrel domain EMQ_1654 PF00471 Ribosomal protein L33 EMQ_1655 PF00994 Probable molybdopterin binding domain EMQ_1655 PF03453 MoeA N-terminal region (domain I and II) EMQ_1655 PF03454 MoeA C-terminal region (domain IV) EMQ_1656 PF01979 Amidohydrolase family EMQ_1657 PF02540 NAD synthase EMQ_1657 PF00795 Carbon-nitrogen hydrolase EMQ_1658 PF01039 Carboxyl transferase domain EMQ_1658 PF17848 Acetyl-coA carboxylase zinc finger domain EMQ_1659 PF08245 Mur ligase middle domain EMQ_1659 PF02875 Mur ligase family, glutamate ligase domain EMQ_1662 PF00202 Aminotransferase class-III EMQ_1664 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_1665 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_1666 PF13416 Bacterial extracellular solute-binding protein EMQ_1667 PF00005 ABC transporter EMQ_1667 PF08402 TOBE domain EMQ_1668 PF00171 Aldehyde dehydrogenase family EMQ_1672 PF00892 EamA-like transporter family EMQ_1674 PF02472 Biopolymer transport protein ExbD/TolR EMQ_1675 PF01618 MotA/TolQ/ExbB proton channel family EMQ_1677 PF00593 TonB dependent receptor EMQ_1677 PF07715 TonB-dependent Receptor Plug Domain EMQ_1678 PF18331 PKHD-type hydroxylase C-terminal domain EMQ_1678 PF13640 2OG-Fe(II) oxygenase superfamily EMQ_1680 PF01180 Dihydroorotate dehydrogenase EMQ_1681 PF07043 Protein of unknown function (DUF1328) EMQ_1683 PF00005 ABC transporter EMQ_1686 PF01196 Ribosomal protein L17 EMQ_1687 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EMQ_1687 PF01000 RNA polymerase Rpb3/RpoA insert domain EMQ_1687 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EMQ_1688 PF00411 Ribosomal protein S11 EMQ_1689 PF00416 Ribosomal protein S13/S18 EMQ_1690 PF05191 Adenylate kinase, active site lid EMQ_1691 PF00344 SecY translocase EMQ_1692 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EMQ_1693 PF00327 Ribosomal protein L30p/L7e EMQ_1694 PF03719 Ribosomal protein S5, C-terminal domain EMQ_1694 PF00333 Ribosomal protein S5, N-terminal domain EMQ_1695 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EMQ_1696 PF00347 Ribosomal protein L6 EMQ_1697 PF00410 Ribosomal protein S8 EMQ_1698 PF00253 Ribosomal protein S14p/S29e EMQ_1699 PF00673 ribosomal L5P family C-terminus EMQ_1699 PF00281 Ribosomal protein L5 EMQ_1700 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EMQ_1701 PF00238 Ribosomal protein L14p/L23e EMQ_1702 PF00366 Ribosomal protein S17 EMQ_1703 PF00831 Ribosomal L29 protein EMQ_1704 PF00252 Ribosomal protein L16p/L10e EMQ_1705 PF07650 KH domain EMQ_1705 PF00189 Ribosomal protein S3, C-terminal domain EMQ_1706 PF00237 Ribosomal protein L22p/L17e EMQ_1707 PF00203 Ribosomal protein S19 EMQ_1708 PF00181 Ribosomal Proteins L2, RNA binding domain EMQ_1708 PF03947 Ribosomal Proteins L2, C-terminal domain EMQ_1709 PF00276 Ribosomal protein L23 EMQ_1710 PF00573 Ribosomal protein L4/L1 family EMQ_1711 PF00297 Ribosomal protein L3 EMQ_1712 PF00338 Ribosomal protein S10p/S20e EMQ_1713 PF03144 Elongation factor Tu domain 2 EMQ_1713 PF00009 Elongation factor Tu GTP binding domain EMQ_1713 PF03143 Elongation factor Tu C-terminal domain EMQ_1714 PF00177 Ribosomal protein S7p/S5e EMQ_1715 PF00164 Ribosomal protein S12/S23 EMQ_1717 PF04998 RNA polymerase Rpb1, domain 5 EMQ_1717 PF05000 RNA polymerase Rpb1, domain 4 EMQ_1717 PF04983 RNA polymerase Rpb1, domain 3 EMQ_1717 PF00623 RNA polymerase Rpb1, domain 2 EMQ_1717 PF04997 RNA polymerase Rpb1, domain 1 EMQ_1718 PF00562 RNA polymerase Rpb2, domain 6 EMQ_1718 PF10385 RNA polymerase beta subunit external 1 domain EMQ_1718 PF04565 RNA polymerase Rpb2, domain 3 EMQ_1718 PF04561 RNA polymerase Rpb2, domain 2 EMQ_1718 PF04563 RNA polymerase beta subunit EMQ_1718 PF04560 RNA polymerase Rpb2, domain 7 EMQ_1719 PF00542 Ribosomal protein L7/L12 C-terminal domain EMQ_1719 PF16320 Ribosomal protein L7/L12 dimerisation domain EMQ_1720 PF00466 Ribosomal protein L10 EMQ_1721 PF00687 Ribosomal protein L1p/L10e family EMQ_1722 PF00298 Ribosomal protein L11, RNA binding domain EMQ_1722 PF03946 Ribosomal protein L11, N-terminal domain EMQ_1725 PF02416 mttA/Hcf106 family EMQ_1726 PF00596 Class II Aldolase and Adducin N-terminal domain EMQ_1727 PF03079 ARD/ARD' family EMQ_1729 PF01687 Riboflavin kinase EMQ_1729 PF06574 FAD synthetase EMQ_1730 PF07859 alpha/beta hydrolase fold EMQ_1731 PF06100 MCRA family EMQ_1732 PF00701 Dihydrodipicolinate synthetase family EMQ_1734 PF00034 Cytochrome c EMQ_1734 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EMQ_1735 PF05199 GMC oxidoreductase EMQ_1735 PF00732 GMC oxidoreductase EMQ_1738 PF01921 tRNA synthetases class I (K) EMQ_1739 PF13180 PDZ domain EMQ_1740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1740 PF03459 TOBE domain EMQ_1741 PF04349 Periplasmic glucan biosynthesis protein, MdoG EMQ_1742 PF13632 Glycosyl transferase family group 2 EMQ_1743 PF00210 Ferritin-like domain EMQ_1745 PF13567 Domain of unknown function (DUF4131) EMQ_1745 PF03772 Competence protein EMQ_1745 PF00753 Metallo-beta-lactamase superfamily EMQ_1747 PF18073 Rubredoxin metal binding domain EMQ_1747 PF06745 KaiC EMQ_1749 PF00459 Inositol monophosphatase family EMQ_1750 PF09285 Elongation factor P, C-terminal EMQ_1750 PF01132 Elongation factor P (EF-P) OB domain EMQ_1750 PF08207 Elongation factor P (EF-P) KOW-like domain EMQ_1752 PF13411 MerR HTH family regulatory protein EMQ_1753 PF00216 Bacterial DNA-binding protein EMQ_1754 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EMQ_1754 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EMQ_1755 PF02504 Fatty acid synthesis protein EMQ_1756 PF01783 Ribosomal L32p protein family EMQ_1759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_1759 PF00512 His Kinase A (phospho-acceptor) domain EMQ_1759 PF00672 HAMP domain EMQ_1760 PF00072 Response regulator receiver domain EMQ_1760 PF00486 Transcriptional regulatory protein, C terminal EMQ_1763 PF01327 Polypeptide deformylase EMQ_1765 PF01165 Ribosomal protein S21 EMQ_1767 PF00085 Thioredoxin EMQ_1773 PF00664 ABC transporter transmembrane region EMQ_1773 PF00005 ABC transporter EMQ_1773 PF03412 Peptidase C39 family EMQ_1775 PF02965 Vitamin B12 dependent methionine synthase, activation domain EMQ_1775 PF00809 Pterin binding enzyme EMQ_1775 PF02574 Homocysteine S-methyltransferase EMQ_1775 PF02310 B12 binding domain EMQ_1775 PF02607 B12 binding domain EMQ_1776 PF07732 Multicopper oxidase EMQ_1776 PF07731 Multicopper oxidase EMQ_1778 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EMQ_1778 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EMQ_1779 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_1780 PF01266 FAD dependent oxidoreductase EMQ_1781 PF13462 Thioredoxin EMQ_1782 PF07690 Major Facilitator Superfamily EMQ_1783 PF04185 Phosphoesterase family EMQ_1783 PF05506 Domain of unknown function (DUF756) EMQ_1784 PF00501 AMP-binding enzyme EMQ_1784 PF01553 Acyltransferase EMQ_1785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EMQ_1787 PF07498 Rho termination factor, N-terminal domain EMQ_1787 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EMQ_1787 PF07497 Rho termination factor, RNA-binding domain EMQ_1789 PF01544 CorA-like Mg2+ transporter protein EMQ_1790 PF00535 Glycosyl transferase family 2 EMQ_1791 PF04321 RmlD substrate binding domain EMQ_1792 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EMQ_1793 PF00483 Nucleotidyl transferase EMQ_1794 PF16363 GDP-mannose 4,6 dehydratase EMQ_1799 PF01336 OB-fold nucleic acid binding domain EMQ_1799 PF02811 PHP domain EMQ_1799 PF14579 Helix-hairpin-helix motif EMQ_1799 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EMQ_1799 PF07733 Bacterial DNA polymerase III alpha NTPase domain EMQ_1809 PF02583 Metal-sensitive transcriptional repressor EMQ_1810 PF07732 Multicopper oxidase EMQ_1810 PF07731 Multicopper oxidase EMQ_1810 PF00394 Multicopper oxidase EMQ_1811 PF05275 Copper resistance protein B precursor (CopB) EMQ_1814 PF00175 Oxidoreductase NAD-binding domain EMQ_1814 PF00042 Globin EMQ_1814 PF00970 Oxidoreductase FAD-binding domain EMQ_1815 PF00111 2Fe-2S iron-sulfur cluster binding domain EMQ_1818 PF02195 ParB-like nuclease domain EMQ_1818 PF17762 HTH domain found in ParB protein EMQ_1831 PF05284 Protein of unknown function (DUF736) EMQ_1839 PF13614 AAA domain EMQ_1840 PF01555 DNA methylase EMQ_1845 PF01464 Transglycosylase SLT domain EMQ_1848 PF03960 ArsC family EMQ_1849 PF02040 Arsenical pump membrane protein EMQ_1850 PF03358 NADPH-dependent FMN reductase EMQ_1852 PF00873 AcrB/AcrD/AcrF family EMQ_1861 PF13411 MerR HTH family regulatory protein EMQ_1864 PF13411 MerR HTH family regulatory protein EMQ_1866 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EMQ_1867 PF01545 Cation efflux family EMQ_1867 PF16916 Dimerisation domain of Zinc Transporter EMQ_1868 PF13411 MerR HTH family regulatory protein EMQ_1869 PF00403 Heavy-metal-associated domain EMQ_1872 PF00873 AcrB/AcrD/AcrF family EMQ_1874 PF02534 Type IV secretory system Conjugative DNA transfer EMQ_1876 PF00437 Type II/IV secretion system protein EMQ_1877 PF04956 TrbC/VIRB2 family EMQ_1879 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EMQ_1884 PF03743 Bacterial conjugation TrbI-like protein EMQ_1886 PF03466 LysR substrate binding domain EMQ_1886 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1889 PF00589 Phage integrase family EMQ_1889 PF02899 Phage integrase, N-terminal SAM-like domain EMQ_1890 PF03466 LysR substrate binding domain EMQ_1890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1894 PF02492 CobW/HypB/UreG, nucleotide-binding domain EMQ_1894 PF07683 Cobalamin synthesis protein cobW C-terminal domain EMQ_1896 PF08335 GlnD PII-uridylyltransferase EMQ_1896 PF03710 Glutamate-ammonia ligase adenylyltransferase EMQ_1897 PF00578 AhpC/TSA family EMQ_1899 PF00083 Sugar (and other) transporter EMQ_1901 PF00717 Peptidase S24-like EMQ_1901 PF01726 LexA DNA binding domain EMQ_1902 PF01053 Cys/Met metabolism PLP-dependent enzyme EMQ_1903 PF00581 Rhodanese-like domain EMQ_1905 PF01594 AI-2E family transporter EMQ_1908 PF03922 OmpW family EMQ_1909 PF13545 Crp-like helix-turn-helix domain EMQ_1909 PF00027 Cyclic nucleotide-binding domain EMQ_1911 PF01048 Phosphorylase superfamily EMQ_1912 PF02167 Cytochrome C1 family EMQ_1913 PF00033 Cytochrome b/b6/petB EMQ_1913 PF00032 Cytochrome b(C-terminal)/b6/petD EMQ_1914 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_1916 PF00175 Oxidoreductase NAD-binding domain EMQ_1916 PF00970 Oxidoreductase FAD-binding domain EMQ_1916 PF00111 2Fe-2S iron-sulfur cluster binding domain EMQ_1918 PF01571 Aminomethyltransferase folate-binding domain EMQ_1918 PF08669 Glycine cleavage T-protein C-terminal barrel domain EMQ_1920 PF08669 Glycine cleavage T-protein C-terminal barrel domain EMQ_1920 PF01571 Aminomethyltransferase folate-binding domain EMQ_1921 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EMQ_1922 PF00571 CBS domain EMQ_1922 PF00005 ABC transporter EMQ_1923 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_1924 PF06277 Ethanolamine utilisation protein EutA EMQ_1925 PF06751 Ethanolamine ammonia lyase large subunit (EutB) EMQ_1926 PF00196 Bacterial regulatory proteins, luxR family EMQ_1926 PF00072 Response regulator receiver domain EMQ_1927 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EMQ_1927 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EMQ_1928 PF00551 Formyl transferase EMQ_1930 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_1930 PF17806 Sarcosine oxidase A3 domain EMQ_1930 PF01571 Aminomethyltransferase folate-binding domain EMQ_1930 PF08669 Glycine cleavage T-protein C-terminal barrel domain EMQ_1931 PF04267 Sarcosine oxidase, delta subunit family EMQ_1932 PF01266 FAD dependent oxidoreductase EMQ_1933 PF03466 LysR substrate binding domain EMQ_1933 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1936 PF01493 GXGXG motif EMQ_1937 PF01645 Conserved region in glutamate synthase EMQ_1938 PF00120 Glutamine synthetase, catalytic domain EMQ_1940 PF00909 Ammonium Transporter Family EMQ_1941 PF01266 FAD dependent oxidoreductase EMQ_1944 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EMQ_1945 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EMQ_1952 PF06508 Queuosine biosynthesis protein QueC EMQ_1954 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EMQ_1957 PF00795 Carbon-nitrogen hydrolase EMQ_1958 PF17755 UvrA DNA-binding domain EMQ_1960 PF05995 Cysteine dioxygenase type I EMQ_1961 PF00596 Class II Aldolase and Adducin N-terminal domain EMQ_1962 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EMQ_1962 PF01842 ACT domain EMQ_1962 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EMQ_1963 PF00296 Luciferase-like monooxygenase EMQ_1964 PF03466 LysR substrate binding domain EMQ_1964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_1966 PF01613 Flavin reductase like domain EMQ_1967 PF00920 Dehydratase family EMQ_1969 PF03060 Nitronate monooxygenase EMQ_1970 PF00156 Phosphoribosyl transferase domain EMQ_1970 PF13537 Glutamine amidotransferase domain EMQ_1975 PF18331 PKHD-type hydroxylase C-terminal domain EMQ_1975 PF13640 2OG-Fe(II) oxygenase superfamily EMQ_1978 PF02082 Transcriptional regulator EMQ_1979 PF00970 Oxidoreductase FAD-binding domain EMQ_1979 PF00175 Oxidoreductase NAD-binding domain EMQ_1979 PF00042 Globin EMQ_1981 PF04073 Aminoacyl-tRNA editing domain EMQ_1982 PF00270 DEAD/DEAH box helicase EMQ_1982 PF00271 Helicase conserved C-terminal domain EMQ_1984 PF00561 alpha/beta hydrolase fold EMQ_1984 PF07021 Methionine biosynthesis protein MetW EMQ_1985 PF00561 alpha/beta hydrolase fold EMQ_1987 PF03918 Cytochrome C biogenesis protein EMQ_1988 PF08534 Redoxin EMQ_1989 PF01578 Cytochrome C assembly protein EMQ_1989 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EMQ_1990 PF03100 CcmE EMQ_1992 PF01578 Cytochrome C assembly protein EMQ_1998 PF01011 PQQ enzyme repeat EMQ_1999 PF07885 Ion channel EMQ_1999 PF17655 Inward rectifier potassium channel C-terminal domain EMQ_2000 PF01979 Amidohydrolase family EMQ_2003 PF00534 Glycosyl transferases group 1 EMQ_2003 PF13439 Glycosyltransferase Family 4 EMQ_2005 PF08021 Siderophore-interacting FAD-binding domain EMQ_2005 PF04954 Siderophore-interacting protein EMQ_2006 PF05099 Tellurite resistance protein TerB EMQ_2006 PF00226 DnaJ domain EMQ_2009 PF08331 Domain of unknown function (DUF1730) EMQ_2010 PF01218 Coproporphyrinogen III oxidase EMQ_2012 PF00391 PEP-utilising enzyme, mobile domain EMQ_2012 PF05524 PEP-utilising enzyme, N-terminal EMQ_2012 PF02896 PEP-utilising enzyme, TIM barrel domain EMQ_2013 PF00381 PTS HPr component phosphorylation site EMQ_2015 PF03668 P-loop ATPase protein family EMQ_2016 PF02603 HPr Serine kinase N terminus EMQ_2016 PF07475 HPr Serine kinase C-terminal domain EMQ_2018 PF00535 Glycosyl transferase family 2 EMQ_2018 PF00534 Glycosyl transferases group 1 EMQ_2020 PF00534 Glycosyl transferases group 1 EMQ_2020 PF13439 Glycosyltransferase Family 4 EMQ_2027 PF02416 mttA/Hcf106 family EMQ_2028 PF00902 Sec-independent protein translocase protein (TatC) EMQ_2029 PF02403 Seryl-tRNA synthetase N-terminal domain EMQ_2029 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EMQ_2031 PF00676 Dehydrogenase E1 component EMQ_2032 PF02779 Transketolase, pyrimidine binding domain EMQ_2032 PF02780 Transketolase, C-terminal domain EMQ_2033 PF00364 Biotin-requiring enzyme EMQ_2033 PF00561 alpha/beta hydrolase fold EMQ_2036 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EMQ_2036 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EMQ_2037 PF01212 Beta-eliminating lyase EMQ_2038 PF01156 Inosine-uridine preferring nucleoside hydrolase EMQ_2040 PF01702 Queuine tRNA-ribosyltransferase EMQ_2041 PF02547 Queuosine biosynthesis protein EMQ_2042 PF00154 recA bacterial DNA recombination protein EMQ_2043 PF01638 HxlR-like helix-turn-helix EMQ_2044 PF05368 NmrA-like family EMQ_2047 PF04143 Sulphur transport EMQ_2048 PF00266 Aminotransferase class-V EMQ_2052 PF01523 Putative modulator of DNA gyrase EMQ_2054 PF01204 Trehalase EMQ_2055 PF00226 DnaJ domain EMQ_2055 PF01556 DnaJ C terminal domain EMQ_2055 PF00684 DnaJ central domain EMQ_2056 PF00012 Hsp70 protein EMQ_2057 PF01025 GrpE EMQ_2058 PF00072 Response regulator receiver domain EMQ_2058 PF00486 Transcriptional regulatory protein, C terminal EMQ_2059 PF13755 Sensor N-terminal transmembrane domain EMQ_2059 PF00512 His Kinase A (phospho-acceptor) domain EMQ_2059 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_2059 PF00672 HAMP domain EMQ_2059 PF13756 Stimulus-sensing domain EMQ_2060 PF05198 Translation initiation factor IF-3, N-terminal domain EMQ_2060 PF00707 Translation initiation factor IF-3, C-terminal domain EMQ_2061 PF13180 PDZ domain EMQ_2062 PF04408 Helicase associated domain (HA2) EMQ_2062 PF08482 ATP-dependent helicase C-terminal EMQ_2062 PF00270 DEAD/DEAH box helicase EMQ_2062 PF00271 Helicase conserved C-terminal domain EMQ_2064 PF02683 Cytochrome C biogenesis protein transmembrane region EMQ_2064 PF11412 Disulphide bond corrector protein DsbC EMQ_2064 PF13098 Thioredoxin-like domain EMQ_2069 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EMQ_2069 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EMQ_2070 PF01926 50S ribosome-binding GTPase EMQ_2070 PF10396 GTP-binding protein TrmE N-terminus EMQ_2070 PF12631 MnmE helical domain EMQ_2071 PF13932 GidA associated domain EMQ_2071 PF01134 Glucose inhibited division protein A EMQ_2072 PF02527 rRNA small subunit methyltransferase G EMQ_2073 PF13614 AAA domain EMQ_2074 PF17762 HTH domain found in ParB protein EMQ_2074 PF02195 ParB-like nuclease domain EMQ_2078 PF13274 Protein of unknown function (DUF4065) EMQ_2080 PF17755 UvrA DNA-binding domain EMQ_2080 PF17760 UvrA interaction domain EMQ_2083 PF00589 Phage integrase family EMQ_2083 PF13356 Arm DNA-binding domain EMQ_2084 PF13744 Helix-turn-helix domain EMQ_2085 PF05973 Phage derived protein Gp49-like (DUF891) EMQ_2107 PF02325 YGGT family EMQ_2110 PF00962 Adenosine/AMP deaminase EMQ_2114 PF01430 Hsp33 protein EMQ_2116 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EMQ_2116 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EMQ_2117 PF00202 Aminotransferase class-III EMQ_2118 PF00005 ABC transporter EMQ_2119 PF12399 Branched-chain amino acid ATP-binding cassette transporter EMQ_2119 PF00005 ABC transporter EMQ_2121 PF11862 Domain of unknown function (DUF3382) EMQ_2121 PF02653 Branched-chain amino acid transport system / permease component EMQ_2123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_2123 PF00512 His Kinase A (phospho-acceptor) domain EMQ_2123 PF00989 PAS fold EMQ_2123 PF01627 Hpt domain EMQ_2123 PF18415 Histidine kinase receptor ArcB trans-membrane domain EMQ_2123 PF00072 Response regulator receiver domain EMQ_2124 PF00072 Response regulator receiver domain EMQ_2125 PF00795 Carbon-nitrogen hydrolase EMQ_2126 PF01566 Natural resistance-associated macrophage protein EMQ_2127 PF00155 Aminotransferase class I and II EMQ_2129 PF07690 Major Facilitator Superfamily EMQ_2131 PF09339 IclR helix-turn-helix domain EMQ_2131 PF01614 Bacterial transcriptional regulator EMQ_2136 PF03653 Uncharacterised protein family (UPF0093) EMQ_2137 PF13419 Haloacid dehalogenase-like hydrolase EMQ_2138 PF01208 Uroporphyrinogen decarboxylase (URO-D) EMQ_2139 PF02545 Maf-like protein EMQ_2140 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EMQ_2140 PF00326 Prolyl oligopeptidase family EMQ_2142 PF00672 HAMP domain EMQ_2142 PF00512 His Kinase A (phospho-acceptor) domain EMQ_2142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_2143 PF00486 Transcriptional regulatory protein, C terminal EMQ_2143 PF00072 Response regulator receiver domain EMQ_2145 PF00111 2Fe-2S iron-sulfur cluster binding domain EMQ_2146 PF00266 Aminotransferase class-V EMQ_2147 PF01964 Radical SAM ThiC family EMQ_2147 PF13667 ThiC-associated domain EMQ_2148 PF03167 Uracil DNA glycosylase superfamily EMQ_2151 PF00881 Nitroreductase family EMQ_2152 PF00005 ABC transporter EMQ_2153 PF01032 FecCD transport family EMQ_2154 PF01497 Periplasmic binding protein EMQ_2155 PF02082 Transcriptional regulator EMQ_2156 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EMQ_2156 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EMQ_2156 PF02824 TGS domain EMQ_2156 PF03129 Anticodon binding domain EMQ_2157 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EMQ_2161 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EMQ_2161 PF05221 S-adenosyl-L-homocysteine hydrolase EMQ_2164 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EMQ_2167 PF03358 NADPH-dependent FMN reductase EMQ_2168 PF02040 Arsenical pump membrane protein EMQ_2169 PF03960 ArsC family EMQ_2172 PF00668 Condensation domain EMQ_2172 PF00501 AMP-binding enzyme EMQ_2172 PF13193 AMP-binding enzyme C-terminal domain EMQ_2172 PF00550 Phosphopantetheine attachment site EMQ_2173 PF00975 Thioesterase domain EMQ_2174 PF00529 HlyD membrane-fusion protein of T1SS EMQ_2174 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EMQ_2175 PF07690 Major Facilitator Superfamily EMQ_2176 PF02321 Outer membrane efflux protein EMQ_2178 PF01648 4'-phosphopantetheinyl transferase superfamily EMQ_2180 PF00005 ABC transporter EMQ_2180 PF12848 ABC transporter EMQ_2181 PF00719 Inorganic pyrophosphatase EMQ_2182 PF01757 Acyltransferase family EMQ_2185 PF01011 PQQ enzyme repeat EMQ_2185 PF13360 PQQ-like domain EMQ_2187 PF00171 Aldehyde dehydrogenase family EMQ_2188 PF00171 Aldehyde dehydrogenase family EMQ_2189 PF03960 ArsC family EMQ_2193 PF02322 Cytochrome bd terminal oxidase subunit II EMQ_2194 PF01654 Cytochrome bd terminal oxidase subunit I EMQ_2198 PF00313 'Cold-shock' DNA-binding domain EMQ_2200 PF01161 Phosphatidylethanolamine-binding protein EMQ_2204 PF00361 Proton-conducting membrane transporter EMQ_2204 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus EMQ_2211 PF00474 Sodium:solute symporter family EMQ_2213 PF01232 Mannitol dehydrogenase Rossmann domain EMQ_2213 PF08125 Mannitol dehydrogenase C-terminal domain EMQ_2214 PF08338 Domain of unknown function (DUF1731) EMQ_2214 PF01370 NAD dependent epimerase/dehydratase family EMQ_2217 PF01979 Amidohydrolase family EMQ_2219 PF00117 Glutamine amidotransferase class-I EMQ_2219 PF00958 GMP synthase C terminal domain EMQ_2219 PF02540 NAD synthase EMQ_2220 PF01381 Helix-turn-helix EMQ_2221 PF18273 Type III R-M EcoP15I C-terminal domain EMQ_2221 PF01555 DNA methylase EMQ_2224 PF12804 MobA-like NTP transferase domain EMQ_2224 PF00132 Bacterial transferase hexapeptide (six repeats) EMQ_2231 PF01266 FAD dependent oxidoreductase EMQ_2232 PF00155 Aminotransferase class I and II EMQ_2233 PF00550 Phosphopantetheine attachment site EMQ_2234 PF00501 AMP-binding enzyme EMQ_2243 PF01850 PIN domain EMQ_2245 PF01555 DNA methylase EMQ_2248 PF05284 Protein of unknown function (DUF736) EMQ_2249 PF01381 Helix-turn-helix EMQ_2257 PF01464 Transglycosylase SLT domain EMQ_2259 PF00561 alpha/beta hydrolase fold EMQ_2266 PF00999 Sodium/hydrogen exchanger family EMQ_2272 PF01925 Sulfite exporter TauE/SafE EMQ_2274 PF00753 Metallo-beta-lactamase superfamily EMQ_2275 PF00578 AhpC/TSA family EMQ_2275 PF10417 C-terminal domain of 1-Cys peroxiredoxin EMQ_2277 PF00664 ABC transporter transmembrane region EMQ_2277 PF00005 ABC transporter EMQ_2278 PF00005 ABC transporter EMQ_2278 PF00664 ABC transporter transmembrane region EMQ_2279 PF01654 Cytochrome bd terminal oxidase subunit I EMQ_2280 PF02322 Cytochrome bd terminal oxidase subunit II EMQ_2282 PF04143 Sulphur transport EMQ_2285 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EMQ_2285 PF17203 Single cache domain 3 EMQ_2285 PF00989 PAS fold EMQ_2285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_2287 PF04542 Sigma-70 region 2 EMQ_2287 PF08281 Sigma-70, region 4 EMQ_2296 PF02423 Ornithine cyclodeaminase/mu-crystallin family EMQ_2297 PF00491 Arginase family EMQ_2298 PF00005 ABC transporter EMQ_2299 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_2300 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_2301 PF01266 FAD dependent oxidoreductase EMQ_2302 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_2302 PF04324 BFD-like [2Fe-2S] binding domain EMQ_2304 PF00497 Bacterial extracellular solute-binding proteins, family 3 EMQ_2305 PF03466 LysR substrate binding domain EMQ_2305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2306 PF00005 ABC transporter EMQ_2307 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_2308 PF09084 NMT1/THI5 like EMQ_2309 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EMQ_2309 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EMQ_2311 PF00881 Nitroreductase family EMQ_2312 PF00067 Cytochrome P450 EMQ_2313 PF18011 C-terminal domain found in long catalases EMQ_2313 PF00199 Catalase EMQ_2313 PF06628 Catalase-related immune-responsive EMQ_2314 PF00171 Aldehyde dehydrogenase family EMQ_2318 PF00730 HhH-GPD superfamily base excision DNA repair protein EMQ_2318 PF14815 NUDIX domain EMQ_2320 PF00762 Ferrochelatase EMQ_2325 PF07683 Cobalamin synthesis protein cobW C-terminal domain EMQ_2325 PF02492 CobW/HypB/UreG, nucleotide-binding domain EMQ_2326 PF02514 CobN/Magnesium Chelatase EMQ_2327 PF07685 CobB/CobQ-like glutamine amidotransferase domain EMQ_2327 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EMQ_2328 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP EMQ_2328 PF12557 Cob(I)alamin adenosyltransferase N terminal EMQ_2329 PF07685 CobB/CobQ-like glutamine amidotransferase domain EMQ_2329 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EMQ_2330 PF00155 Aminotransferase class I and II EMQ_2331 PF07995 Glucose / Sorbosone dehydrogenase EMQ_2332 PF04632 Fusaric acid resistance protein family EMQ_2335 PF03796 DnaB-like helicase C terminal domain EMQ_2335 PF00772 DnaB-like helicase N terminal domain EMQ_2337 PF01565 FAD binding domain EMQ_2337 PF02913 FAD linked oxidases, C-terminal domain EMQ_2339 PF01300 Telomere recombination EMQ_2339 PF03481 Putative GTP-binding controlling metal-binding EMQ_2340 PF00459 Inositol monophosphatase family EMQ_2341 PF07690 Major Facilitator Superfamily EMQ_2343 PF02789 Cytosol aminopeptidase family, N-terminal domain EMQ_2343 PF00883 Cytosol aminopeptidase family, catalytic domain EMQ_2345 PF00248 Aldo/keto reductase family EMQ_2348 PF02321 Outer membrane efflux protein EMQ_2351 PF02195 ParB-like nuclease domain EMQ_2351 PF17762 HTH domain found in ParB protein EMQ_2359 PF04986 Putative transposase EMQ_2359 PF14319 Transposase zinc-binding domain EMQ_2360 PF00589 Phage integrase family EMQ_2360 PF13495 Phage integrase, N-terminal SAM-like domain EMQ_2368 PF05284 Protein of unknown function (DUF736) EMQ_2376 PF13614 AAA domain EMQ_2377 PF01555 DNA methylase EMQ_2382 PF01464 Transglycosylase SLT domain EMQ_2387 PF02534 Type IV secretory system Conjugative DNA transfer EMQ_2391 PF00176 SNF2 family N-terminal domain EMQ_2391 PF00271 Helicase conserved C-terminal domain EMQ_2396 PF00437 Type II/IV secretion system protein EMQ_2397 PF04956 TrbC/VIRB2 family EMQ_2399 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EMQ_2402 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EMQ_2405 PF03743 Bacterial conjugation TrbI-like protein EMQ_2407 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2407 PF03466 LysR substrate binding domain EMQ_2408 PF00440 Bacterial regulatory proteins, tetR family EMQ_2409 PF00248 Aldo/keto reductase family EMQ_2414 PF07690 Major Facilitator Superfamily EMQ_2419 PF03466 LysR substrate binding domain EMQ_2419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2420 PF03466 LysR substrate binding domain EMQ_2421 PF00106 short chain dehydrogenase EMQ_2422 PF00561 alpha/beta hydrolase fold EMQ_2423 PF04820 Tryptophan halogenase EMQ_2427 PF00109 Beta-ketoacyl synthase, N-terminal domain EMQ_2427 PF02801 Beta-ketoacyl synthase, C-terminal domain EMQ_2431 PF00501 AMP-binding enzyme EMQ_2431 PF13193 AMP-binding enzyme C-terminal domain EMQ_2432 PF00665 Integrase core domain EMQ_2432 PF13276 HTH-like domain EMQ_2432 PF13333 Integrase core domain EMQ_2433 PF01527 Transposase EMQ_2435 PF00550 Phosphopantetheine attachment site EMQ_2437 PF01209 ubiE/COQ5 methyltransferase family EMQ_2438 PF00884 Sulfatase EMQ_2440 PF03466 LysR substrate binding domain EMQ_2440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2441 PF00750 tRNA synthetases class I (R) EMQ_2441 PF05746 DALR anticodon binding domain EMQ_2441 PF03485 Arginyl tRNA synthetase N terminal domain EMQ_2443 PF02616 Segregation and condensation protein ScpA EMQ_2444 PF04079 Segregation and condensation complex subunit ScpB EMQ_2447 PF13603 Leucyl-tRNA synthetase, Domain 2 EMQ_2447 PF00133 tRNA synthetases class I (I, L, M and V) EMQ_2447 PF08264 Anticodon-binding domain of tRNA EMQ_2453 PF00005 ABC transporter EMQ_2453 PF00664 ABC transporter transmembrane region EMQ_2453 PF03412 Peptidase C39 family EMQ_2456 PF14572 Phosphoribosyl synthetase-associated domain EMQ_2456 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EMQ_2457 PF00300 Histidine phosphatase superfamily (branch 1) EMQ_2460 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_2460 PF00107 Zinc-binding dehydrogenase EMQ_2461 PF01042 Endoribonuclease L-PSP EMQ_2464 PF01757 Acyltransferase family EMQ_2470 PF00171 Aldehyde dehydrogenase family EMQ_2472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2472 PF03466 LysR substrate binding domain EMQ_2475 PF17287 POTRA domain EMQ_2475 PF08479 POTRA domain, ShlB-type EMQ_2475 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB EMQ_2476 PF05594 Haemagluttinin repeat EMQ_2476 PF13332 Hemagglutinin repeat EMQ_2476 PF05860 haemagglutination activity domain EMQ_2476 PF04829 Pre-toxin domain with VENN motif EMQ_2476 PF15526 Novel toxin 21 EMQ_2481 PF00849 RNA pseudouridylate synthase EMQ_2482 PF04542 Sigma-70 region 2 EMQ_2482 PF04545 Sigma-70, region 4 EMQ_2482 PF00140 Sigma-70 factor, region 1.2 EMQ_2483 PF01725 Ham1 family EMQ_2484 PF00248 Aldo/keto reductase family EMQ_2485 PF01628 HrcA protein C terminal domain EMQ_2492 PF00899 ThiF family EMQ_2495 PF02887 Pyruvate kinase, alpha/beta domain EMQ_2495 PF00224 Pyruvate kinase, barrel domain EMQ_2496 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EMQ_2496 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EMQ_2496 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EMQ_2496 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EMQ_2497 PF02581 Thiamine monophosphate synthase EMQ_2497 PF08543 Phosphomethylpyrimidine kinase EMQ_2498 PF00486 Transcriptional regulatory protein, C terminal EMQ_2498 PF00072 Response regulator receiver domain EMQ_2499 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EMQ_2499 PF18269 T3SS EscN ATPase C-terminal domain EMQ_2499 PF02874 ATP synthase alpha/beta family, beta-barrel domain EMQ_2501 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EMQ_2502 PF12705 PD-(D/E)XK nuclease superfamily EMQ_2503 PF00580 UvrD/REP helicase N-terminal domain EMQ_2503 PF12705 PD-(D/E)XK nuclease superfamily EMQ_2503 PF13361 UvrD-like helicase C-terminal domain EMQ_2507 PF02627 Carboxymuconolactone decarboxylase family EMQ_2508 PF03969 AFG1-like ATPase EMQ_2509 PF16078 2-oxoglutarate dehydrogenase N-terminus EMQ_2509 PF02779 Transketolase, pyrimidine binding domain EMQ_2509 PF16870 2-oxoglutarate dehydrogenase C-terminal EMQ_2509 PF00676 Dehydrogenase E1 component EMQ_2510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EMQ_2510 PF00364 Biotin-requiring enzyme EMQ_2510 PF02817 e3 binding domain EMQ_2511 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_2511 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EMQ_2517 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EMQ_2518 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EMQ_2520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EMQ_2521 PF02571 Precorrin-6x reductase CbiJ/CobK EMQ_2522 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EMQ_2523 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EMQ_2524 PF02570 Precorrin-8X methylmutase EMQ_2525 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EMQ_2528 PF08502 LeuA allosteric (dimerisation) domain EMQ_2528 PF00682 HMGL-like EMQ_2531 PF00999 Sodium/hydrogen exchanger family EMQ_2534 PF00205 Thiamine pyrophosphate enzyme, central domain EMQ_2534 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EMQ_2534 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EMQ_2535 PF10369 Small subunit of acetolactate synthase EMQ_2536 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EMQ_2536 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EMQ_2540 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_2541 PF03466 LysR substrate binding domain EMQ_2541 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2543 PF00155 Aminotransferase class I and II EMQ_2545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EMQ_2545 PF00289 Biotin carboxylase, N-terminal domain EMQ_2545 PF02785 Biotin carboxylase C-terminal domain EMQ_2546 PF00364 Biotin-requiring enzyme EMQ_2547 PF00106 short chain dehydrogenase EMQ_2548 PF02682 Carboxyltransferase domain, subdomain C and D EMQ_2549 PF02626 Carboxyltransferase domain, subdomain A and B EMQ_2550 PF03746 LamB/YcsF family EMQ_2551 PF00892 EamA-like transporter family EMQ_2552 PF07690 Major Facilitator Superfamily EMQ_2553 PF05045 Rhamnan synthesis protein F EMQ_2553 PF14307 Glycosyltransferase WbsX EMQ_2554 PF17932 Tetracyclin repressor-like, C-terminal domain EMQ_2554 PF00440 Bacterial regulatory proteins, tetR family EMQ_2558 PF13091 PLD-like domain EMQ_2558 PF13396 Phospholipase_D-nuclease N-terminal EMQ_2559 PF00291 Pyridoxal-phosphate dependent enzyme EMQ_2560 PF00290 Tryptophan synthase alpha chain EMQ_2564 PF03692 Putative zinc- or iron-chelating domain EMQ_2567 PF00005 ABC transporter EMQ_2567 PF08402 TOBE domain EMQ_2573 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_2574 PF00842 Alanine racemase, C-terminal domain EMQ_2574 PF01168 Alanine racemase, N-terminal domain EMQ_2575 PF16177 Acetyl-coenzyme A synthetase N-terminus EMQ_2575 PF00501 AMP-binding enzyme EMQ_2575 PF13193 AMP-binding enzyme C-terminal domain EMQ_2577 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EMQ_2577 PF14850 DNA-binding domain of Proline dehydrogenase EMQ_2577 PF01619 Proline dehydrogenase EMQ_2577 PF00171 Aldehyde dehydrogenase family EMQ_2578 PF03358 NADPH-dependent FMN reductase EMQ_2579 PF03466 LysR substrate binding domain EMQ_2579 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2580 PF12697 Alpha/beta hydrolase family EMQ_2581 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EMQ_2581 PF01872 RibD C-terminal domain EMQ_2582 PF00677 Lumazine binding domain EMQ_2583 PF00925 GTP cyclohydrolase II EMQ_2583 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EMQ_2584 PF00885 6,7-dimethyl-8-ribityllumazine synthase EMQ_2586 PF03989 DNA gyrase C-terminal domain, beta-propeller EMQ_2586 PF00521 DNA gyrase/topoisomerase IV, subunit A EMQ_2587 PF01467 Cytidylyltransferase-like EMQ_2588 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EMQ_2591 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EMQ_2591 PF02154 Flagellar motor switch protein FliM EMQ_2595 PF00440 Bacterial regulatory proteins, tetR family EMQ_2595 PF17754 MftR C-terminal domain EMQ_2596 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_2597 PF00171 Aldehyde dehydrogenase family EMQ_2598 PF00355 Rieske [2Fe-2S] domain EMQ_2600 PF02347 Glycine cleavage system P-protein EMQ_2601 PF01597 Glycine cleavage H-protein EMQ_2602 PF01571 Aminomethyltransferase folate-binding domain EMQ_2602 PF08669 Glycine cleavage T-protein C-terminal barrel domain EMQ_2603 PF02675 S-adenosylmethionine decarboxylase EMQ_2604 PF17284 Spermidine synthase tetramerisation domain EMQ_2608 PF00216 Bacterial DNA-binding protein EMQ_2610 PF03807 NADP oxidoreductase coenzyme F420-dependent EMQ_2610 PF14748 Pyrroline-5-carboxylate reductase dimerisation EMQ_2613 PF01370 NAD dependent epimerase/dehydratase family EMQ_2614 PF01790 Prolipoprotein diacylglyceryl transferase EMQ_2616 PF02578 Multi-copper polyphenol oxidoreductase laccase EMQ_2618 PF01923 Cobalamin adenosyltransferase EMQ_2623 PF01728 FtsJ-like methyltransferase EMQ_2623 PF18125 RlmM ferredoxin-like domain EMQ_2625 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EMQ_2625 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EMQ_2627 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EMQ_2627 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EMQ_2630 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EMQ_2631 PF01192 RNA polymerase Rpb6 EMQ_2632 PF02824 TGS domain EMQ_2632 PF04607 Region found in RelA / SpoT proteins EMQ_2632 PF13291 ACT domain EMQ_2633 PF01648 4'-phosphopantetheinyl transferase superfamily EMQ_2634 PF10502 Signal peptidase, peptidase S26 EMQ_2635 PF14622 Ribonuclease-III-like EMQ_2635 PF00035 Double-stranded RNA binding motif EMQ_2636 PF01926 50S ribosome-binding GTPase EMQ_2636 PF07650 KH domain EMQ_2637 PF00696 Amino acid kinase family EMQ_2638 PF01765 Ribosome recycling factor EMQ_2639 PF01255 Putative undecaprenyl diphosphate synthase EMQ_2641 PF13288 DXP reductoisomerase C-terminal domain EMQ_2641 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EMQ_2641 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EMQ_2642 PF02163 Peptidase family M50 EMQ_2642 PF17820 PDZ domain EMQ_2643 PF01103 Surface antigen EMQ_2643 PF07244 Surface antigen variable number repeat EMQ_2645 PF00132 Bacterial transferase hexapeptide (six repeats) EMQ_2645 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EMQ_2646 PF07977 FabA-like domain EMQ_2647 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EMQ_2647 PF00132 Bacterial transferase hexapeptide (six repeats) EMQ_2648 PF17930 LpxI N-terminal domain EMQ_2648 PF06230 LpxI C-terminal domain EMQ_2650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EMQ_2652 PF00468 Ribosomal protein L34 EMQ_2653 PF00825 Ribonuclease P EMQ_2654 PF02096 60Kd inner membrane protein EMQ_2654 PF14849 YidC periplasmic domain EMQ_2655 PF01926 50S ribosome-binding GTPase EMQ_2656 PF00696 Amino acid kinase family EMQ_2657 PF00034 Cytochrome c EMQ_2657 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EMQ_2658 PF13360 PQQ-like domain EMQ_2658 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EMQ_2659 PF01027 Inhibitor of apoptosis-promoting Bax1 EMQ_2660 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EMQ_2660 PF06481 COX Aromatic Rich Motif EMQ_2661 PF00115 Cytochrome C and Quinol oxidase polypeptide I EMQ_2662 PF00510 Cytochrome c oxidase subunit III EMQ_2663 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EMQ_2665 PF00037 4Fe-4S binding domain EMQ_2665 PF11953 Domain of unknown function (DUF3470) EMQ_2667 PF00883 Cytosol aminopeptidase family, catalytic domain EMQ_2667 PF02789 Cytosol aminopeptidase family, N-terminal domain EMQ_2670 PF03824 High-affinity nickel-transport protein EMQ_2672 PF00953 Glycosyl transferase family 4 EMQ_2673 PF02719 Polysaccharide biosynthesis protein EMQ_2674 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EMQ_2676 PF13419 Haloacid dehalogenase-like hydrolase EMQ_2679 PF01475 Ferric uptake regulator family EMQ_2681 PF00795 Carbon-nitrogen hydrolase EMQ_2682 PF01381 Helix-turn-helix EMQ_2684 PF00436 Single-strand binding protein family EMQ_2685 PF00034 Cytochrome c EMQ_2685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EMQ_2685 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EMQ_2686 PF01799 [2Fe-2S] binding domain EMQ_2686 PF00111 2Fe-2S iron-sulfur cluster binding domain EMQ_2687 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EMQ_2688 PF00183 Hsp90 protein EMQ_2690 PF00005 ABC transporter EMQ_2690 PF16326 ABC transporter C-terminal domain EMQ_2691 PF00072 Response regulator receiver domain EMQ_2692 PF04542 Sigma-70 region 2 EMQ_2692 PF08281 Sigma-70, region 4 EMQ_2698 PF00561 alpha/beta hydrolase fold EMQ_2700 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_2700 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EMQ_2705 PF00216 Bacterial DNA-binding protein EMQ_2710 PF05284 Protein of unknown function (DUF736) EMQ_2712 PF01381 Helix-turn-helix EMQ_2717 PF13333 Integrase core domain EMQ_2717 PF13276 HTH-like domain EMQ_2717 PF00665 Integrase core domain EMQ_2718 PF01527 Transposase EMQ_2733 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EMQ_2734 PF00873 AcrB/AcrD/AcrF family EMQ_2735 PF00072 Response regulator receiver domain EMQ_2735 PF00486 Transcriptional regulatory protein, C terminal EMQ_2736 PF00512 His Kinase A (phospho-acceptor) domain EMQ_2736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_2738 PF01654 Cytochrome bd terminal oxidase subunit I EMQ_2739 PF02322 Cytochrome bd terminal oxidase subunit II EMQ_2741 PF00384 Molybdopterin oxidoreductase EMQ_2742 PF06463 Molybdenum Cofactor Synthesis C EMQ_2742 PF04055 Radical SAM superfamily EMQ_2743 PF12804 MobA-like NTP transferase domain EMQ_2743 PF01967 MoaC family EMQ_2745 PF02391 MoaE protein EMQ_2746 PF02634 FdhD/NarQ family EMQ_2749 PF02107 Flagellar L-ring protein EMQ_2751 PF00460 Flagella basal body rod protein EMQ_2751 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EMQ_2752 PF00460 Flagella basal body rod protein EMQ_2752 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EMQ_2753 PF01494 FAD binding domain EMQ_2754 PF00881 Nitroreductase family EMQ_2759 PF00083 Sugar (and other) transporter EMQ_2761 PF00551 Formyl transferase EMQ_2762 PF00375 Sodium:dicarboxylate symporter family EMQ_2763 PF02646 RmuC family EMQ_2764 PF02867 Ribonucleotide reductase, barrel domain EMQ_2764 PF08471 Class II vitamin B12-dependent ribonucleotide reductase EMQ_2770 PF02358 Trehalose-phosphatase EMQ_2771 PF00982 Glycosyltransferase family 20 EMQ_2772 PF02600 Disulfide bond formation protein DsbB EMQ_2775 PF07724 AAA domain (Cdc48 subfamily) EMQ_2775 PF17871 AAA lid domain EMQ_2775 PF02861 Clp amino terminal domain, pathogenicity island component EMQ_2775 PF10431 C-terminal, D2-small domain, of ClpB protein EMQ_2775 PF00004 ATPase family associated with various cellular activities (AAA) EMQ_2777 PF01292 Prokaryotic cytochrome b561 EMQ_2779 PF01425 Amidase EMQ_2781 PF00266 Aminotransferase class-V EMQ_2785 PF13454 FAD-NAD(P)-binding EMQ_2786 PF00860 Permease family EMQ_2792 PF01527 Transposase EMQ_2793 PF13276 HTH-like domain EMQ_2793 PF13333 Integrase core domain EMQ_2793 PF00665 Integrase core domain EMQ_2805 PF00717 Peptidase S24-like EMQ_2805 PF01381 Helix-turn-helix EMQ_2807 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_2808 PF00005 ABC transporter EMQ_2809 PF01402 Ribbon-helix-helix protein, copG family EMQ_2809 PF08753 NikR C terminal nickel binding domain EMQ_2811 PF09347 Domain of unknown function (DUF1989) EMQ_2812 PF00364 Biotin-requiring enzyme EMQ_2812 PF02785 Biotin carboxylase C-terminal domain EMQ_2812 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EMQ_2812 PF00289 Biotin carboxylase, N-terminal domain EMQ_2813 PF01425 Amidase EMQ_2818 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EMQ_2819 PF00732 GMC oxidoreductase EMQ_2819 PF05199 GMC oxidoreductase EMQ_2820 PF01546 Peptidase family M20/M25/M40 EMQ_2820 PF07687 Peptidase dimerisation domain EMQ_2822 PF03466 LysR substrate binding domain EMQ_2822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2823 PF00005 ABC transporter EMQ_2824 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_2825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_2825 PF03466 LysR substrate binding domain EMQ_2826 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EMQ_2827 PF00596 Class II Aldolase and Adducin N-terminal domain EMQ_2830 PF03171 2OG-Fe(II) oxygenase superfamily EMQ_2830 PF14226 non-haem dioxygenase in morphine synthesis N-terminal EMQ_2833 PF00180 Isocitrate/isopropylmalate dehydrogenase EMQ_2837 PF00075 RNase H EMQ_2838 PF01636 Phosphotransferase enzyme family EMQ_2839 PF02401 LytB protein EMQ_2842 PF03951 Glutamine synthetase, beta-Grasp domain EMQ_2842 PF00120 Glutamine synthetase, catalytic domain EMQ_2843 PF00543 Nitrogen regulatory protein P-II EMQ_2844 PF00155 Aminotransferase class I and II EMQ_2846 PF03819 MazG nucleotide pyrophosphohydrolase domain EMQ_2847 PF01638 HxlR-like helix-turn-helix EMQ_2848 PF00107 Zinc-binding dehydrogenase EMQ_2848 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_2849 PF00730 HhH-GPD superfamily base excision DNA repair protein EMQ_2849 PF00633 Helix-hairpin-helix motif EMQ_2849 PF10576 Iron-sulfur binding domain of endonuclease III EMQ_2851 PF00873 AcrB/AcrD/AcrF family EMQ_2852 PF02321 Outer membrane efflux protein EMQ_2853 PF06719 AraC-type transcriptional regulator N-terminus EMQ_2853 PF12833 Helix-turn-helix domain EMQ_2855 PF00085 Thioredoxin EMQ_2856 PF00004 ATPase family associated with various cellular activities (AAA) EMQ_2856 PF05362 Lon protease (S16) C-terminal proteolytic domain EMQ_2856 PF02190 ATP-dependent protease La (LON) substrate-binding domain EMQ_2857 PF03966 Trm112p-like protein EMQ_2859 PF02310 B12 binding domain EMQ_2859 PF04055 Radical SAM superfamily EMQ_2860 PF02397 Bacterial sugar transferase EMQ_2863 PF00534 Glycosyl transferases group 1 EMQ_2863 PF13439 Glycosyltransferase Family 4 EMQ_2865 PF02563 Polysaccharide biosynthesis/export protein EMQ_2866 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) EMQ_2867 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EMQ_2867 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EMQ_2870 PF00300 Histidine phosphatase superfamily (branch 1) EMQ_2871 PF02654 Cobalamin-5-phosphate synthase EMQ_2872 PF02277 Phosphoribosyltransferase EMQ_2873 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EMQ_2877 PF08281 Sigma-70, region 4 EMQ_2877 PF04542 Sigma-70 region 2 EMQ_2880 PF00664 ABC transporter transmembrane region EMQ_2880 PF00005 ABC transporter EMQ_2881 PF00005 ABC transporter EMQ_2881 PF00664 ABC transporter transmembrane region EMQ_2883 PF00270 DEAD/DEAH box helicase EMQ_2883 PF16124 RecQ zinc-binding EMQ_2883 PF09382 RQC domain EMQ_2883 PF00271 Helicase conserved C-terminal domain EMQ_2883 PF00570 HRDC domain EMQ_2884 PF00455 DeoR C terminal sensor domain EMQ_2884 PF08220 DeoR-like helix-turn-helix domain EMQ_2885 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EMQ_2885 PF01266 FAD dependent oxidoreductase EMQ_2886 PF00230 Major intrinsic protein EMQ_2887 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EMQ_2887 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EMQ_2889 PF13439 Glycosyltransferase Family 4 EMQ_2890 PF13439 Glycosyltransferase Family 4 EMQ_2890 PF00534 Glycosyl transferases group 1 EMQ_2892 PF13439 Glycosyltransferase Family 4 EMQ_2892 PF00534 Glycosyl transferases group 1 EMQ_2894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_2894 PF00512 His Kinase A (phospho-acceptor) domain EMQ_2894 PF00672 HAMP domain EMQ_2896 PF00072 Response regulator receiver domain EMQ_2896 PF00486 Transcriptional regulatory protein, C terminal EMQ_2897 PF00005 ABC transporter EMQ_2901 PF00324 Amino acid permease EMQ_2902 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EMQ_2907 PF02910 Fumarate reductase flavoprotein C-term EMQ_2907 PF00890 FAD binding domain EMQ_2909 PF00296 Luciferase-like monooxygenase EMQ_2910 PF00296 Luciferase-like monooxygenase EMQ_2911 PF00296 Luciferase-like monooxygenase EMQ_2914 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_2917 PF00571 CBS domain EMQ_2917 PF00478 IMP dehydrogenase / GMP reductase domain EMQ_2918 PF00361 Proton-conducting membrane transporter EMQ_2919 PF00361 Proton-conducting membrane transporter EMQ_2920 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EMQ_2920 PF00361 Proton-conducting membrane transporter EMQ_2921 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EMQ_2922 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EMQ_2923 PF12838 4Fe-4S dicluster domain EMQ_2924 PF00146 NADH dehydrogenase EMQ_2925 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EMQ_2925 PF00384 Molybdopterin oxidoreductase EMQ_2925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EMQ_2926 PF10531 SLBB domain EMQ_2926 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EMQ_2926 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EMQ_2928 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EMQ_2928 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EMQ_2929 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EMQ_2930 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EMQ_2935 PF00574 Clp protease EMQ_2937 PF00144 Beta-lactamase EMQ_2939 PF01513 ATP-NAD kinase EMQ_2940 PF08345 Flagellar M-ring protein C-terminal EMQ_2940 PF01514 Secretory protein of YscJ/FliF family EMQ_2941 PF14841 FliG middle domain EMQ_2941 PF01706 FliG C-terminal domain EMQ_2941 PF14842 FliG N-terminal domain EMQ_2943 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EMQ_2944 PF00158 Sigma-54 interaction domain EMQ_2944 PF02954 Bacterial regulatory protein, Fis family EMQ_2945 PF00771 FHIPEP family EMQ_2947 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EMQ_2947 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus EMQ_2948 PF04963 Sigma-54 factor, core binding domain EMQ_2948 PF04552 Sigma-54, DNA binding domain EMQ_2948 PF00309 Sigma-54 factor, Activator interacting domain (AID) EMQ_2949 PF00005 ABC transporter EMQ_2952 PF01380 SIS domain EMQ_2952 PF00571 CBS domain EMQ_2956 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_2956 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EMQ_2957 PF01645 Conserved region in glutamate synthase EMQ_2957 PF01493 GXGXG motif EMQ_2957 PF04898 Glutamate synthase central domain EMQ_2957 PF00310 Glutamine amidotransferases class-II EMQ_2958 PF00248 Aldo/keto reductase family EMQ_2959 PF00728 Glycosyl hydrolase family 20, catalytic domain EMQ_2959 PF07691 PA14 domain EMQ_2959 PF02838 Glycosyl hydrolase family 20, domain 2 EMQ_2963 PF13356 Arm DNA-binding domain EMQ_2963 PF00589 Phage integrase family EMQ_2985 PF02698 DUF218 domain EMQ_2986 PF00857 Isochorismatase family EMQ_2987 PF02608 ABC transporter substrate-binding protein PnrA-like EMQ_2988 PF00005 ABC transporter EMQ_2990 PF02653 Branched-chain amino acid transport system / permease component EMQ_2991 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EMQ_2991 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EMQ_2992 PF03477 ATP cone domain EMQ_2992 PF02867 Ribonucleotide reductase, barrel domain EMQ_2992 PF00317 Ribonucleotide reductase, all-alpha domain EMQ_2993 PF00268 Ribonucleotide reductase, small chain EMQ_2995 PF01943 Polysaccharide biosynthesis protein EMQ_2999 PF00576 HIUase/Transthyretin family EMQ_3002 PF00266 Aminotransferase class-V EMQ_3003 PF01546 Peptidase family M20/M25/M40 EMQ_3007 PF03466 LysR substrate binding domain EMQ_3007 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_3008 PF00857 Isochorismatase family EMQ_3009 PF01968 Hydantoinase/oxoprolinase EMQ_3009 PF05378 Hydantoinase/oxoprolinase N-terminal region EMQ_3010 PF02538 Hydantoinase B/oxoprolinase EMQ_3011 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EMQ_3012 PF07969 Amidohydrolase family EMQ_3013 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_3024 PF00873 AcrB/AcrD/AcrF family EMQ_3025 PF13533 Biotin-lipoyl like EMQ_3027 PF13847 Methyltransferase domain EMQ_3029 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EMQ_3029 PF03900 Porphobilinogen deaminase, C-terminal domain EMQ_3030 PF00814 Glycoprotease family EMQ_3032 PF00175 Oxidoreductase NAD-binding domain EMQ_3032 PF00970 Oxidoreductase FAD-binding domain EMQ_3034 PF03601 Conserved hypothetical protein 698 EMQ_3035 PF03466 LysR substrate binding domain EMQ_3035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_3036 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_3036 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EMQ_3037 PF00909 Ammonium Transporter Family EMQ_3040 PF07963 Prokaryotic N-terminal methylation motif EMQ_3040 PF08334 Type II secretion system (T2SS), protein G EMQ_3042 PF01464 Transglycosylase SLT domain EMQ_3043 PF01266 FAD dependent oxidoreductase EMQ_3044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EMQ_3044 PF02203 Tar ligand binding domain homologue EMQ_3044 PF00672 HAMP domain EMQ_3045 PF00072 Response regulator receiver domain EMQ_3046 PF02895 Signal transducing histidine kinase, homodimeric domain EMQ_3046 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EMQ_3046 PF01627 Hpt domain EMQ_3046 PF01584 CheW-like domain EMQ_3047 PF01584 CheW-like domain EMQ_3048 PF03705 CheR methyltransferase, all-alpha domain EMQ_3048 PF01739 CheR methyltransferase, SAM binding domain EMQ_3049 PF00072 Response regulator receiver domain EMQ_3049 PF01339 CheB methylesterase EMQ_3050 PF00072 Response regulator receiver domain EMQ_3051 PF03975 CheD chemotactic sensory transduction EMQ_3053 PF12848 ABC transporter EMQ_3053 PF00005 ABC transporter EMQ_3054 PF00334 Nucleoside diphosphate kinase EMQ_3058 PF10282 Lactonase, 7-bladed beta-propeller EMQ_3059 PF03949 Malic enzyme, NAD binding domain EMQ_3059 PF00390 Malic enzyme, N-terminal domain EMQ_3061 PF09190 DALR domain EMQ_3061 PF01406 tRNA synthetases class I (C) catalytic domain EMQ_3064 PF02368 Bacterial Ig-like domain (group 2) EMQ_3064 PF08244 Glycosyl hydrolases family 32 C terminal EMQ_3064 PF00251 Glycosyl hydrolases family 32 N-terminal domain EMQ_3064 PF02210 Laminin G domain EMQ_3067 PF01266 FAD dependent oxidoreductase EMQ_3069 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_3069 PF17806 Sarcosine oxidase A3 domain EMQ_3069 PF08669 Glycine cleavage T-protein C-terminal barrel domain EMQ_3069 PF01571 Aminomethyltransferase folate-binding domain EMQ_3071 PF03315 Serine dehydratase beta chain EMQ_3071 PF03313 Serine dehydratase alpha chain EMQ_3072 PF00355 Rieske [2Fe-2S] domain EMQ_3072 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EMQ_3073 PF00970 Oxidoreductase FAD-binding domain EMQ_3073 PF00111 2Fe-2S iron-sulfur cluster binding domain EMQ_3073 PF00175 Oxidoreductase NAD-binding domain EMQ_3074 PF12833 Helix-turn-helix domain EMQ_3074 PF01965 DJ-1/PfpI family EMQ_3075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EMQ_3076 PF13183 4Fe-4S dicluster domain EMQ_3076 PF02754 Cysteine-rich domain EMQ_3079 PF00107 Zinc-binding dehydrogenase EMQ_3079 PF08240 Alcohol dehydrogenase GroES-like domain EMQ_3080 PF00756 Putative esterase EMQ_3082 PF02321 Outer membrane efflux protein EMQ_3083 PF13533 Biotin-lipoyl like EMQ_3085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_3085 PF03466 LysR substrate binding domain EMQ_3086 PF02796 Helix-turn-helix domain of resolvase EMQ_3086 PF00239 Resolvase, N terminal domain EMQ_3089 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_3089 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EMQ_3090 PF01965 DJ-1/PfpI family EMQ_3090 PF12833 Helix-turn-helix domain EMQ_3092 PF00464 Serine hydroxymethyltransferase EMQ_3093 PF00795 Carbon-nitrogen hydrolase EMQ_3093 PF00583 Acetyltransferase (GNAT) family EMQ_3095 PF00732 GMC oxidoreductase EMQ_3095 PF05199 GMC oxidoreductase EMQ_3096 PF00171 Aldehyde dehydrogenase family EMQ_3097 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_3098 PF00571 CBS domain EMQ_3098 PF00005 ABC transporter EMQ_3100 PF01475 Ferric uptake regulator family EMQ_3104 PF00375 Sodium:dicarboxylate symporter family EMQ_3106 PF00324 Amino acid permease EMQ_3107 PF00274 Fructose-bisphosphate aldolase class-I EMQ_3108 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EMQ_3108 PF00205 Thiamine pyrophosphate enzyme, central domain EMQ_3108 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EMQ_3109 PF02754 Cysteine-rich domain EMQ_3110 PF11870 Domain of unknown function (DUF3390) EMQ_3110 PF13183 4Fe-4S dicluster domain EMQ_3110 PF02589 LUD domain EMQ_3115 PF14579 Helix-hairpin-helix motif EMQ_3115 PF02811 PHP domain EMQ_3115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EMQ_3115 PF07733 Bacterial DNA polymerase III alpha NTPase domain EMQ_3118 PF00318 Ribosomal protein S2 EMQ_3119 PF00889 Elongation factor TS EMQ_3120 PF02565 Recombination protein O C terminal EMQ_3120 PF11967 Recombination protein O N terminal EMQ_3123 PF03989 DNA gyrase C-terminal domain, beta-propeller EMQ_3123 PF00521 DNA gyrase/topoisomerase IV, subunit A EMQ_3128 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EMQ_3129 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EMQ_3130 PF01066 CDP-alcohol phosphatidyltransferase EMQ_3131 PF02666 Phosphatidylserine decarboxylase EMQ_3135 PF16123 Hydroxyacylglutathione hydrolase C-terminus EMQ_3135 PF00753 Metallo-beta-lactamase superfamily EMQ_3140 PF00005 ABC transporter EMQ_3145 PF00380 Ribosomal protein S9/S16 EMQ_3146 PF00572 Ribosomal protein L13 EMQ_3148 PF01594 AI-2E family transporter EMQ_3149 PF02569 Pantoate-beta-alanine ligase EMQ_3150 PF02548 Ketopantoate hydroxymethyltransferase EMQ_3154 PF03702 Anhydro-N-acetylmuramic acid kinase EMQ_3155 PF00005 ABC transporter EMQ_3156 PF02405 Permease MlaE EMQ_3157 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EMQ_3157 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EMQ_3157 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EMQ_3161 PF00472 RF-1 domain EMQ_3161 PF03462 PCRF domain EMQ_3162 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EMQ_3163 PF03466 LysR substrate binding domain EMQ_3163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_3164 PF07715 TonB-dependent Receptor Plug Domain EMQ_3164 PF00593 TonB dependent receptor EMQ_3167 PF00924 Mechanosensitive ion channel EMQ_3168 PF06271 RDD family EMQ_3169 PF01960 ArgJ family EMQ_3170 PF00639 PPIC-type PPIASE domain EMQ_3171 PF07516 SecA Wing and Scaffold domain EMQ_3171 PF02810 SEC-C motif EMQ_3171 PF07517 SecA DEAD-like domain EMQ_3171 PF01043 SecA preprotein cross-linking domain EMQ_3172 PF01709 Transcriptional regulator EMQ_3174 PF01979 Amidohydrolase family EMQ_3176 PF00793 DAHP synthetase I family EMQ_3177 PF00117 Glutamine amidotransferase class-I EMQ_3177 PF06418 CTP synthase N-terminus EMQ_3180 PF00121 Triosephosphate isomerase EMQ_3183 PF04715 Anthranilate synthase component I, N terminal region EMQ_3183 PF00425 chorismate binding enzyme EMQ_3184 PF03476 MOSC N-terminal beta barrel domain EMQ_3184 PF03473 MOSC domain EMQ_3184 PF00111 2Fe-2S iron-sulfur cluster binding domain EMQ_3185 PF01384 Phosphate transporter family EMQ_3187 PF03976 Polyphosphate kinase 2 (PPK2) EMQ_3189 PF01738 Dienelactone hydrolase family EMQ_3194 PF02769 AIR synthase related protein, C-terminal domain EMQ_3194 PF00586 AIR synthase related protein, N-terminal domain EMQ_3195 PF01029 NusB family EMQ_3196 PF03477 ATP cone domain EMQ_3199 PF02684 Lipid-A-disaccharide synthetase EMQ_3201 PF00255 Glutathione peroxidase EMQ_3202 PF00905 Penicillin binding protein transpeptidase domain EMQ_3202 PF17092 Penicillin-binding protein OB-like domain EMQ_3202 PF00912 Transglycosylase EMQ_3204 PF00472 RF-1 domain EMQ_3204 PF03462 PCRF domain EMQ_3206 PF01618 MotA/TolQ/ExbB proton channel family EMQ_3207 PF02472 Biopolymer transport protein ExbD/TolR EMQ_3211 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EMQ_3212 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EMQ_3213 PF07715 TonB-dependent Receptor Plug Domain EMQ_3213 PF00593 TonB dependent receptor EMQ_3214 PF07715 TonB-dependent Receptor Plug Domain EMQ_3214 PF00593 TonB dependent receptor EMQ_3215 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EMQ_3216 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EMQ_3216 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EMQ_3218 PF01205 Uncharacterized protein family UPF0029 EMQ_3220 PF01479 S4 domain EMQ_3220 PF00849 RNA pseudouridylate synthase EMQ_3221 PF07722 Peptidase C26 EMQ_3222 PF14437 MafB19-like deaminase EMQ_3223 PF13180 PDZ domain EMQ_3225 PF07683 Cobalamin synthesis protein cobW C-terminal domain EMQ_3225 PF02492 CobW/HypB/UreG, nucleotide-binding domain EMQ_3226 PF07690 Major Facilitator Superfamily EMQ_3228 PF02511 Thymidylate synthase complementing protein EMQ_3230 PF05683 Fumarase C-terminus EMQ_3230 PF05681 Fumarate hydratase (Fumerase) EMQ_3234 PF00579 tRNA synthetases class I (W and Y) EMQ_3235 PF02129 X-Pro dipeptidyl-peptidase (S15 family) EMQ_3236 PF00266 Aminotransferase class-V EMQ_3237 PF04794 YdjC-like protein EMQ_3238 PF04055 Radical SAM superfamily EMQ_3238 PF06969 HemN C-terminal domain EMQ_3241 PF02779 Transketolase, pyrimidine binding domain EMQ_3241 PF02780 Transketolase, C-terminal domain EMQ_3241 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EMQ_3242 PF06463 Molybdenum Cofactor Synthesis C EMQ_3242 PF04055 Radical SAM superfamily EMQ_3243 PF00571 CBS domain EMQ_3243 PF01595 Cyclin M transmembrane N-terminal domain EMQ_3243 PF03471 Transporter associated domain EMQ_3244 PF03379 CcmB protein EMQ_3245 PF00005 ABC transporter EMQ_3246 PF00330 Aconitase family (aconitate hydratase) EMQ_3246 PF00694 Aconitase C-terminal domain EMQ_3247 PF00005 ABC transporter EMQ_3248 PF00528 Binding-protein-dependent transport system inner membrane component EMQ_3249 PF03466 LysR substrate binding domain EMQ_3249 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_3251 PF00004 ATPase family associated with various cellular activities (AAA) EMQ_3251 PF10431 C-terminal, D2-small domain, of ClpB protein EMQ_3251 PF07724 AAA domain (Cdc48 subfamily) EMQ_3251 PF17871 AAA lid domain EMQ_3251 PF02861 Clp amino terminal domain, pathogenicity island component EMQ_3253 PF17384 RimP C-terminal SH3 domain EMQ_3253 PF02576 RimP N-terminal domain EMQ_3254 PF13184 NusA-like KH domain EMQ_3254 PF00575 S1 RNA binding domain EMQ_3254 PF08529 NusA N-terminal domain EMQ_3256 PF08364 Bacterial translation initiation factor IF-2 associated region EMQ_3256 PF04760 Translation initiation factor IF-2, N-terminal region EMQ_3256 PF00009 Elongation factor Tu GTP binding domain EMQ_3256 PF11987 Translation-initiation factor 2 EMQ_3257 PF02033 Ribosome-binding factor A EMQ_3258 PF13340 Putative transposase of IS4/5 family (DUF4096) EMQ_3262 PF00669 Bacterial flagellin N-terminal helical region EMQ_3262 PF00700 Bacterial flagellin C-terminal helical region EMQ_3263 PF07378 Flagellar protein FlbT EMQ_3264 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EMQ_3264 PF03466 LysR substrate binding domain EMQ_3265 PF01479 S4 domain EMQ_3265 PF00163 Ribosomal protein S4/S9 N-terminal domain EMQ_3266 PF16658 Class II release factor RF3, C-terminal domain EMQ_3266 PF00009 Elongation factor Tu GTP binding domain EMQ_3266 PF03144 Elongation factor Tu domain 2 EMQ_3267 PF01614 Bacterial transcriptional regulator EMQ_3267 PF09339 IclR helix-turn-helix domain EMQ_3271 PF04055 Radical SAM superfamily EMQ_3271 PF13282 Domain of unknown function (DUF4070) EMQ_3271 PF02310 B12 binding domain EMQ_3272 PF00155 Aminotransferase class I and II EMQ_3273 PF00155 Aminotransferase class I and II EMQ_3274 PF02435 Levansucrase/Invertase EMQ_3275 PF00749 tRNA synthetases class I (E and Q), catalytic domain EMQ_3278 PF07992 Pyridine nucleotide-disulphide oxidoreductase EMQ_3278 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EMQ_3278 PF00403 Heavy-metal-associated domain EMQ_3279 PF00403 Heavy-metal-associated domain EMQ_3282 PF03169 OPT oligopeptide transporter protein EMQ_3283 PF00924 Mechanosensitive ion channel EMQ_3283 PF12795 Mechanosensitive ion channel porin domain EMQ_3283 PF12794 Mechanosensitive ion channel inner membrane domain 1 EMQ_3285 PF00675 Insulinase (Peptidase family M16) EMQ_3285 PF05193 Peptidase M16 inactive domain EMQ_3287 PF00005 ABC transporter EMQ_3289 PF00692 dUTPase EMQ_3290 PF04127 DNA / pantothenate metabolism flavoprotein EMQ_3290 PF02441 Flavoprotein EMQ_3291 PF01209 ubiE/COQ5 methyltransferase family EMQ_3292 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EMQ_3292 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EMQ_3293 PF01649 Ribosomal protein S20 EMQ_P103 PF00873 AcrB/AcrD/AcrF family EMQ_P104 PF17841 BID domain of Bartonella effector protein (Bep) EMQ_P104 PF03389 MobA/MobL family EMQ_P104 PF01443 Viral (Superfamily 1) RNA helicase EMQ_P110 PF13276 HTH-like domain EMQ_P110 PF13333 Integrase core domain EMQ_P110 PF00665 Integrase core domain EMQ_P111 PF01527 Transposase EMQ_P112 PF18543 Intracellular delivery domain EMQ_P112 PF02661 Fic/DOC family EMQ_P125 PF06067 Domain of unknown function (DUF932) EMQ_P133 PF17762 HTH domain found in ParB protein EMQ_P133 PF02195 ParB-like nuclease domain EMQ_P138 PF05406 WGR domain EMQ_P142 PF02796 Helix-turn-helix domain of resolvase EMQ_P142 PF00239 Resolvase, N terminal domain EMQ_P144 PF01464 Transglycosylase SLT domain EMQ_P145 PF04956 TrbC/VIRB2 family EMQ_P146 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EMQ_P149 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EMQ_P150 PF04335 VirB8 protein EMQ_P151 PF03524 Conjugal transfer protein EMQ_P152 PF03743 Bacterial conjugation TrbI-like protein EMQ_P153 PF00437 Type II/IV secretion system protein EMQ_P154 PF02534 Type IV secretory system Conjugative DNA transfer EMQ_P158 PF03960 ArsC family EMQ_P159 PF02040 Arsenical pump membrane protein EMQ_P160 PF03358 NADPH-dependent FMN reductase EMQ_P162 PF00392 Bacterial regulatory proteins, gntR family EMQ_P162 PF00155 Aminotransferase class I and II EMQ_P164 PF02796 Helix-turn-helix domain of resolvase EMQ_P164 PF00239 Resolvase, N terminal domain EMQ_P165 PF13700 Domain of unknown function (DUF4158) EMQ_P165 PF01526 Tn3 transposase DDE domain EMQ_P167 PF00916 Sulfate permease family EMQ_P167 PF01740 STAS domain EMQ_P169 PF09278 MerR, DNA binding EMQ_P169 PF00376 MerR family regulatory protein EMQ_P201 PF10134 Replication initiator protein A EMQ_P203 PF02796 Helix-turn-helix domain of resolvase EMQ_P203 PF00239 Resolvase, N terminal domain EMQ_P209 PF10124 Mu-like prophage major head subunit gpT EMQ_P223 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system EMQ_P227 PF03389 MobA/MobL family EMQ_P227 PF01443 Viral (Superfamily 1) RNA helicase EMQ_P227 PF17841 BID domain of Bartonella effector protein (Bep) EMQ_P238 PF02796 Helix-turn-helix domain of resolvase EMQ_P238 PF00239 Resolvase, N terminal domain EMQ_P239 PF01526 Tn3 transposase DDE domain EMQ_P239 PF13700 Domain of unknown function (DUF4158) EMQ_P308 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family EMQ_P402 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ EMQ_P403 PF04221 RelB antitoxin EMQ_P404 PF11127 Protein of unknown function (DUF2892) EMQ_P404 PF00581 Rhodanese-like domain