A0U92_00055	SM00861	Transketolase, pyrimidine binding domain
A0U92_00110	SM00996	S-adenosyl-L-homocysteine hydrolase
A0U92_00110	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A0U92_00135	SM00382	ATPases associated with a variety of cellular activities
A0U92_00155	SM00382	ATPases associated with a variety of cellular activities
A0U92_00185	SM00564	beta-propeller repeat
A0U92_00205	SM00829	Enoylreductase
A0U92_00210	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
A0U92_00220	SM00855	Phosphoglycerate mutase family
A0U92_00225	SM01400	A0U92_00225
A0U92_00240	SM00382	ATPases associated with a variety of cellular activities
A0U92_00260	SM01043	Bacterial transcriptional activator domain
A0U92_00295	SM00836	DALR anticodon binding domain
A0U92_00295	SM01016	Arginyl tRNA synthetase N terminal dom
A0U92_00350	SM00226	Low molecular weight phosphatase family
A0U92_00375	SM00100	Cyclic nucleotide-monophosphate binding domain
A0U92_00375	SM00419	helix_turn_helix, cAMP Regulatory protein
A0U92_00400	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_00405	SM00450	Rhodanese Homology Domain
A0U92_00485	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A0U92_00490	SM01012	A0U92_00490
A0U92_00510	SM00382	ATPases associated with a variety of cellular activities
A0U92_00510	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U92_00560	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U92_00565	SM00220	Serine/Threonine protein kinases, catalytic domain
A0U92_00575	SM00240	Forkhead associated domain
A0U92_00600	SM00331	Sigma factor PP2C-like phosphatases
A0U92_00600	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A0U92_00610	SM00491	A0U92_00610
A0U92_00630	SM01060	A0U92_00630
A0U92_00655	SM00478	endonuclease III
A0U92_00695	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A0U92_00755	SM00904	Riboflavin kinase
A0U92_00770	SM01007	Class II Aldolase and Adducin N-terminal domain
A0U92_00790	SM00649	Ribosomal protein L11/L12
A0U92_00815	SM00663	RNA polymerase I subunit A N-terminus
A0U92_00835	SM01403	A0U92_00835
A0U92_00855	SM01382	A0U92_00855
A0U92_00855	SM01383	A0U92_00855
A0U92_00870	SM00322	K homology RNA-binding domain
A0U92_00890	SM01374	A0U92_00890
A0U92_00895	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A0U92_00960	SM00662	RNA polymerases D
A0U92_00980	SM00382	ATPases associated with a variety of cellular activities
A0U92_01015	SM00155	Phospholipase D. Active site motifs.
A0U92_01060	SM00072	Guanylate kinase homologues.
A0U92_01090	SM00857	Resolvase, N terminal domain
A0U92_01115	SM00857	Resolvase, N terminal domain
A0U92_01260	SM00448	cheY-homologous receiver domain
A0U92_01260	SM00862	Transcriptional regulatory protein, C terminal
A0U92_01265	SM00382	ATPases associated with a variety of cellular activities
A0U92_01340	SM00917	LeuA allosteric (dimerisation) domain
A0U92_01435	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A0U92_01445	SM00671	Sel1-like repeats.
A0U92_01475	SM00382	ATPases associated with a variety of cellular activities
A0U92_01530	SM00852	Probable molybdopterin binding domain
A0U92_01545	SM01192	A0U92_01545
A0U92_01545	SM01193	A0U92_01545
A0U92_01570	SM00477	DNA/RNA non-specific endonuclease
A0U92_01570	SM00892	DNA/RNA non-specific endonuclease
A0U92_01605	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0U92_01630	SM00479	A0U92_01630
A0U92_01655	SM00248	ankyrin repeats
A0U92_01675	SM00938	Nitrogen regulatory protein P-II
A0U92_01695	SM00382	ATPases associated with a variety of cellular activities
A0U92_01695	SM00962	SRP54-type protein, GTPase domain
A0U92_01695	SM00963	SRP54-type protein, helical bundle domain
A0U92_01735	SM00387	Histidine kinase-like ATPases
A0U92_01735	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_01740	SM00448	cheY-homologous receiver domain
A0U92_01740	SM00862	Transcriptional regulatory protein, C terminal
A0U92_01750	SM00382	ATPases associated with a variety of cellular activities
A0U92_01775	SM00978	A0U92_01775
A0U92_01805	SM00052	Putative diguanylate phosphodiesterase
A0U92_01825	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_01855	SM00986	Uracil DNA glycosylase superfamily
A0U92_01855	SM00987	UreE urease accessory protein, C-terminal domain 
A0U92_01935	SM00387	Histidine kinase-like ATPases
A0U92_01935	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_01935	SM00448	cheY-homologous receiver domain
A0U92_01960	SM01329	A0U92_01960
A0U92_01995	SM00899	A0U92_01995
A0U92_02020	SM00244	prohibitin homologues
A0U92_02035	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A0U92_02040	SM00861	Transketolase, pyrimidine binding domain
A0U92_02085	SM00382	ATPases associated with a variety of cellular activities
A0U92_02165	SM00421	helix_turn_helix, Lux Regulon
A0U92_02175	SM00829	Enoylreductase
A0U92_02215	SM00135	Low-density lipoprotein-receptor YWTD domain
A0U92_02260	SM00829	Enoylreductase
A0U92_02290	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A0U92_02310	SM00853	MutL C terminal dimerisation domain
A0U92_02310	SM01340	A0U92_02310
A0U92_02325	SM00858	A0U92_02325
A0U92_02370	SM01230	A0U92_02370
A0U92_02390	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_02430	SM00421	helix_turn_helix, Lux Regulon
A0U92_02450	SM00382	ATPases associated with a variety of cellular activities
A0U92_02510	SM00831	Cation transporter/ATPase, N-terminus
A0U92_02520	SM00387	Histidine kinase-like ATPases
A0U92_02520	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_02525	SM00421	helix_turn_helix, Lux Regulon
A0U92_02525	SM00448	cheY-homologous receiver domain
A0U92_02535	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U92_02550	SM00382	ATPases associated with a variety of cellular activities
A0U92_02555	SM00382	ATPases associated with a variety of cellular activities
A0U92_02575	SM00903	Flavin reductase like domain
A0U92_02815	SM00860	SMI1 / KNR4 family
A0U92_02870	SM00857	Resolvase, N terminal domain
A0U92_02880	SM00857	Resolvase, N terminal domain
A0U92_02900	SM00382	ATPases associated with a variety of cellular activities
A0U92_02920	SM00857	Resolvase, N terminal domain
A0U92_02995	SM00671	Sel1-like repeats.
A0U92_03010	SM01005	Alanine racemase, C-terminal domain
A0U92_03020	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0U92_03020	SM00895	A0U92_03020
A0U92_03110	SM00448	cheY-homologous receiver domain
A0U92_03110	SM00862	Transcriptional regulatory protein, C terminal
A0U92_03115	SM00387	Histidine kinase-like ATPases
A0U92_03115	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_03160	SM00028	Tetratricopeptide repeats
A0U92_03180	SM00903	Flavin reductase like domain
A0U92_03205	SM01007	Class II Aldolase and Adducin N-terminal domain
A0U92_03215	SM00450	Rhodanese Homology Domain
A0U92_03225	SM00062	Bacterial periplasmic substrate-binding proteins
A0U92_03230	SM00382	ATPases associated with a variety of cellular activities
A0U92_03240	SM00062	Bacterial periplasmic substrate-binding proteins
A0U92_03305	SM00354	helix_turn _helix lactose operon repressor
A0U92_03340	SM00564	beta-propeller repeat
A0U92_03370	SM00857	Resolvase, N terminal domain
A0U92_03505	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_03760	SM00382	ATPases associated with a variety of cellular activities
A0U92_03770	SM00962	SRP54-type protein, GTPase domain
A0U92_03785	SM00382	ATPases associated with a variety of cellular activities
A0U92_03800	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0U92_03805	SM00474	3'-5' exonuclease
A0U92_03895	SM00342	helix_turn_helix, arabinose operon control protein
A0U92_03955	SM00292	breast cancer carboxy-terminal domain
A0U92_03955	SM00532	Ligase N family
A0U92_03975	SM00864	Tubulin/FtsZ family, GTPase domain
A0U92_03975	SM00865	Tubulin/FtsZ family, C-terminal domain
A0U92_03980	SM00842	Cell division protein FtsA
A0U92_04080	SM00998	Adenylosuccinate lyase C-terminus
A0U92_04085	SM01266	A0U92_04085
A0U92_04105	SM01211	A0U92_04105
A0U92_04135	SM00155	Phospholipase D. Active site motifs.
A0U92_04165	SM00798	AICARFT/IMPCHase bienzyme
A0U92_04165	SM00851	MGS-like domain
A0U92_04170	SM00878	Biotin carboxylase C-terminal domain
A0U92_04200	SM00852	Probable molybdopterin binding domain
A0U92_04310	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A0U92_04310	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U92_04315	SM00448	cheY-homologous receiver domain
A0U92_04320	SM00073	Histidine Phosphotransfer domain
A0U92_04320	SM00260	Two component signalling adaptor domain
A0U92_04320	SM00387	Histidine kinase-like ATPases
A0U92_04320	SM01231	A0U92_04320
A0U92_04330	SM00448	cheY-homologous receiver domain
A0U92_04335	SM00448	cheY-homologous receiver domain
A0U92_04350	SM00382	ATPases associated with a variety of cellular activities
A0U92_04355	SM00562	A0U92_04355
A0U92_04375	SM00919	Malic enzyme, NAD binding domain
A0U92_04375	SM01274	A0U92_04375
A0U92_04385	SM00840	A0U92_04385
A0U92_04455	SM00640	Glycosyl hydrolases family 32
A0U92_04505	SM00342	helix_turn_helix, arabinose operon control protein
A0U92_04520	SM00893	Electron transfer flavoprotein domain
A0U92_04530	SM00829	Enoylreductase
A0U92_04570	SM00342	helix_turn_helix, arabinose operon control protein
A0U92_04610	SM00382	ATPases associated with a variety of cellular activities
A0U92_04630	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_04675	SM00867	YceI-like domain 
A0U92_04685	SM00481	DNA polymerase alpha chain like domain
A0U92_04725	SM00434	DNA Topoisomerase IV
A0U92_04770	SM00563	Phosphate acyltransferases
A0U92_04780	SM00849	Metallo-beta-lactamase superfamily
A0U92_04805	SM00382	ATPases associated with a variety of cellular activities
A0U92_04875	SM00382	ATPases associated with a variety of cellular activities
A0U92_04885	SM00984	UDP binding domain
A0U92_04950	SM00957	SecA DEAD-like domain
A0U92_04950	SM00958	SecA preprotein cross-linking domain
A0U92_05070	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A0U92_05070	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A0U92_05125	SM00937	A0U92_05125
A0U92_05210	SM00988	UreE urease accessory protein, N-terminal domain
A0U92_05240	SM00400	zinc finger
A0U92_05240	SM00493	A0U92_05240
A0U92_05305	SM00937	A0U92_05305
A0U92_05310	SM00267	diguanylate cyclase
A0U92_05345	SM00646	A0U92_05345
A0U92_05350	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U92_05355	SM00487	DEAD-like helicases superfamily
A0U92_05355	SM00490	helicase superfamily c-terminal domain
A0U92_05360	SM00052	Putative diguanylate phosphodiesterase
A0U92_05360	SM00267	diguanylate cyclase
A0U92_05365	SM00487	DEAD-like helicases superfamily
A0U92_05365	SM00490	helicase superfamily c-terminal domain
A0U92_05385	SM00487	DEAD-like helicases superfamily
A0U92_05385	SM00490	helicase superfamily c-terminal domain
A0U92_05385	SM00982	A0U92_05385
A0U92_05385	SM01058	CarD-like/TRCF domain
A0U92_05410	SM00382	ATPases associated with a variety of cellular activities
A0U92_05450	SM00867	YceI-like domain 
A0U92_05495	SM00829	Enoylreductase
A0U92_05535	SM00487	DEAD-like helicases superfamily
A0U92_05540	SM00421	helix_turn_helix, Lux Regulon
A0U92_05540	SM00448	cheY-homologous receiver domain
A0U92_05545	SM00387	Histidine kinase-like ATPases
A0U92_05545	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_05545	SM00448	cheY-homologous receiver domain
A0U92_05565	SM00382	ATPases associated with a variety of cellular activities
A0U92_05570	SM00382	ATPases associated with a variety of cellular activities
A0U92_05610	SM00363	S4 RNA-binding domain
A0U92_05625	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U92_05665	SM00342	helix_turn_helix, arabinose operon control protein
A0U92_05675	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A0U92_05705	SM00382	ATPases associated with a variety of cellular activities
A0U92_05710	SM00363	S4 RNA-binding domain
A0U92_05735	SM00487	DEAD-like helicases superfamily
A0U92_05735	SM00490	helicase superfamily c-terminal domain
A0U92_05765	SM00564	beta-propeller repeat
A0U92_05790	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A0U92_05840	SM00829	Enoylreductase
A0U92_05855	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A0U92_05855	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A0U92_05865	SM00822	A0U92_05865
A0U92_05885	SM00382	ATPases associated with a variety of cellular activities
A0U92_05930	SM00971	Serine acetyltransferase, N-terminal
A0U92_05970	SM00382	ATPases associated with a variety of cellular activities
A0U92_05975	SM00382	ATPases associated with a variety of cellular activities
A0U92_06000	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A0U92_06000	SM00474	3'-5' exonuclease
A0U92_06000	SM00475	5'-3' exonuclease
A0U92_06000	SM00482	DNA polymerase A domain
A0U92_06075	SM00564	beta-propeller repeat
A0U92_06095	SM00903	Flavin reductase like domain
A0U92_06105	SM00357	Cold shock protein domain
A0U92_06150	SM00849	Metallo-beta-lactamase superfamily
A0U92_06230	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_06230	SM00876	Biotin and Thiamin Synthesis associated domain
A0U92_06235	SM00052	Putative diguanylate phosphodiesterase
A0U92_06285	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A0U92_06290	SM00822	A0U92_06290
A0U92_06300	SM00825	Beta-ketoacyl synthase
A0U92_06315	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_06435	SM00487	DEAD-like helicases superfamily
A0U92_06435	SM00490	helicase superfamily c-terminal domain
A0U92_06455	SM01120	A0U92_06455
A0U92_06565	SM00858	A0U92_06565
A0U92_06630	SM00382	ATPases associated with a variety of cellular activities
A0U92_06645	SM00382	ATPases associated with a variety of cellular activities
A0U92_06660	SM00845	GatB domain
A0U92_06675	SM00732	Likely ribonuclease with RNase H fold.
A0U92_06685	SM00267	diguanylate cyclase
A0U92_06755	SM00382	ATPases associated with a variety of cellular activities
A0U92_06780	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_06785	SM00463	Small MutS-related domain
A0U92_06800	SM01235	A0U92_06800
A0U92_06810	SM00978	A0U92_06810
A0U92_06815	SM00855	Phosphoglycerate mutase family
A0U92_06840	SM00382	ATPases associated with a variety of cellular activities
A0U92_06870	SM01130	A0U92_06870
A0U92_06880	SM00357	Cold shock protein domain
A0U92_06920	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A0U92_06935	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_06945	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0U92_06950	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A0U92_06950	SM00534	ATPase domain of DNA mismatch repair MUTS family
A0U92_06985	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0U92_06985	SM01240	A0U92_06985
A0U92_07015	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_07025	SM00861	Transketolase, pyrimidine binding domain
A0U92_07060	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0U92_07240	SM00966	SpoVT / AbrB like domain 
A0U92_07250	SM00857	Resolvase, N terminal domain
A0U92_07270	SM00857	Resolvase, N terminal domain
A0U92_07280	SM00857	Resolvase, N terminal domain
A0U92_07360	SM00650	Ribosomal RNA adenine dimethylases
A0U92_07405	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U92_07500	SM00382	ATPases associated with a variety of cellular activities
A0U92_07725	SM00382	ATPases associated with a variety of cellular activities
A0U92_07735	SM00460	Transglutaminase/protease-like homologues
A0U92_07755	SM00479	A0U92_07755
A0U92_07760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U92_07760	SM00387	Histidine kinase-like ATPases
A0U92_07760	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_07765	SM00448	cheY-homologous receiver domain
A0U92_07765	SM00862	Transcriptional regulatory protein, C terminal
A0U92_07805	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_07835	SM00986	Uracil DNA glycosylase superfamily
A0U92_07835	SM00987	UreE urease accessory protein, C-terminal domain 
A0U92_07920	SM00829	Enoylreductase
A0U92_07925	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A0U92_07925	SM00448	cheY-homologous receiver domain
A0U92_07925	SM00911	HWE histidine kinase
A0U92_07945	SM01058	CarD-like/TRCF domain
A0U92_07950	SM00028	Tetratricopeptide repeats
A0U92_07980	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A0U92_08035	SM00450	Rhodanese Homology Domain
A0U92_08065	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A0U92_08075	SM00382	ATPases associated with a variety of cellular activities
A0U92_08140	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U92_08140	SM00245	tail specific protease
A0U92_08200	SM00881	CoA binding domain
A0U92_08210	SM00829	Enoylreductase
A0U92_08235	SM00763	PrkA AAA domain
A0U92_08240	SM00849	Metallo-beta-lactamase superfamily
A0U92_08265	SM00936	Penicillin-binding protein 5, C-terminal domain 
A0U92_08365	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_08415	SM01001	AIR carboxylase
A0U92_08425	SM00382	ATPases associated with a variety of cellular activities
A0U92_08490	SM00271	DnaJ molecular chaperone homology domain
A0U92_08500	SM00327	von Willebrand factor (vWF) type A domain
A0U92_08535	SM00100	Cyclic nucleotide-monophosphate binding domain
A0U92_08535	SM00419	helix_turn_helix, cAMP Regulatory protein
A0U92_08645	SM00947	Carbonic anhydrase
A0U92_08655	SM00460	Transglutaminase/protease-like homologues
A0U92_08670	SM00460	Transglutaminase/protease-like homologues
A0U92_08685	SM00564	beta-propeller repeat
A0U92_08745	SM01323	A0U92_08745
A0U92_08765	SM00852	Probable molybdopterin binding domain
A0U92_08800	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A0U92_08855	SM00883	Chaperonin 10 Kd subunit
A0U92_08885	SM00971	Serine acetyltransferase, N-terminal
A0U92_08895	SM00382	ATPases associated with a variety of cellular activities
A0U92_08940	SM00382	ATPases associated with a variety of cellular activities
A0U92_08945	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A0U92_09000	SM00830	Chorismate mutase type II
A0U92_09145	SM00382	ATPases associated with a variety of cellular activities
A0U92_09145	SM00448	cheY-homologous receiver domain
A0U92_09150	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U92_09150	SM00387	Histidine kinase-like ATPases
A0U92_09150	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_09155	SM00382	ATPases associated with a variety of cellular activities
A0U92_09155	SM00448	cheY-homologous receiver domain
A0U92_09160	SM00387	Histidine kinase-like ATPases
A0U92_09160	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_09175	SM00100	Cyclic nucleotide-monophosphate binding domain
A0U92_09275	SM00028	Tetratricopeptide repeats
A0U92_09280	SM00387	Histidine kinase-like ATPases
A0U92_09280	SM00433	TopoisomeraseII
A0U92_09315	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U92_09315	SM00245	tail specific protease
A0U92_09320	SM00955	A0U92_09320
A0U92_09325	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A0U92_09325	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A0U92_09325	SM00493	A0U92_09325
A0U92_09335	SM01207	A0U92_09335
A0U92_09380	SM00382	ATPases associated with a variety of cellular activities
A0U92_09380	SM00843	A0U92_09380
A0U92_09450	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U92_09450	SM00322	K homology RNA-binding domain
A0U92_09460	SM01387	A0U92_09460
A0U92_09510	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U92_09535	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U92_09555	SM00563	Phosphate acyltransferases
A0U92_09560	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_09575	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0U92_09575	SM01091	Transporter associated domain
A0U92_09610	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_09625	SM00387	Histidine kinase-like ATPases
A0U92_09625	SM00433	TopoisomeraseII
A0U92_09630	SM00382	ATPases associated with a variety of cellular activities
A0U92_09635	SM00480	DNA polymerase III beta subunit
A0U92_09640	SM00382	ATPases associated with a variety of cellular activities
A0U92_09640	SM00760	Bacterial dnaA protein helix-turn-helix domain
A0U92_09650	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A0U92_09650	SM01232	A0U92_09650
A0U92_09675	SM00382	ATPases associated with a variety of cellular activities
A0U92_09690	SM00822	A0U92_09690
A0U92_09730	SM00507	HNH nucleases
A0U92_09780	SM00346	helix_turn_helix isocitrate lyase regulation
A0U92_09790	SM00363	S4 RNA-binding domain
A0U92_09790	SM01390	A0U92_09790
A0U92_09810	SM00028	Tetratricopeptide repeats
A0U92_09840	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U92_09840	SM00322	K homology RNA-binding domain
A0U92_09855	SM00382	ATPases associated with a variety of cellular activities
A0U92_09870	SM00062	Bacterial periplasmic substrate-binding proteins
A0U92_09875	SM00382	ATPases associated with a variety of cellular activities
A0U92_09885	SM00382	ATPases associated with a variety of cellular activities
A0U92_09895	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0U92_09895	SM01091	Transporter associated domain
A0U92_09905	SM00861	Transketolase, pyrimidine binding domain
A0U92_09920	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_09945	SM00905	Dihydroneopterin aldolase
A0U92_09955	SM00493	A0U92_09955
A0U92_09965	SM00382	ATPases associated with a variety of cellular activities
A0U92_09975	SM00382	ATPases associated with a variety of cellular activities
A0U92_09975	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U92_10035	SM00382	ATPases associated with a variety of cellular activities
A0U92_10035	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U92_10045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0U92_10055	SM00091	PAS domain
A0U92_10055	SM00387	Histidine kinase-like ATPases
A0U92_10055	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_10055	SM00448	cheY-homologous receiver domain
A0U92_10060	SM00387	Histidine kinase-like ATPases
A0U92_10060	SM00448	cheY-homologous receiver domain
A0U92_10065	SM00448	cheY-homologous receiver domain
A0U92_10120	SM00382	ATPases associated with a variety of cellular activities
A0U92_10135	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A0U92_10145	SM00851	MGS-like domain
A0U92_10145	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A0U92_10240	SM00271	DnaJ molecular chaperone homology domain
A0U92_10270	SM00838	Elongation factor G C-terminus
A0U92_10290	SM00052	Putative diguanylate phosphodiesterase
A0U92_10290	SM00267	diguanylate cyclase
A0U92_10300	SM00487	DEAD-like helicases superfamily
A0U92_10300	SM00490	helicase superfamily c-terminal domain
A0U92_10315	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_10320	SM00382	ATPases associated with a variety of cellular activities
A0U92_10320	SM00962	SRP54-type protein, GTPase domain
A0U92_10320	SM00963	SRP54-type protein, helical bundle domain
A0U92_10395	SM00450	Rhodanese Homology Domain
A0U92_10400	SM00382	ATPases associated with a variety of cellular activities
A0U92_10425	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_10460	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U92_10470	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U92_10485	SM00382	ATPases associated with a variety of cellular activities
A0U92_10620	SM01004	Delta-aminolevulinic acid dehydratase
A0U92_10635	SM00448	cheY-homologous receiver domain
A0U92_10635	SM00862	Transcriptional regulatory protein, C terminal
A0U92_10640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U92_10640	SM00387	Histidine kinase-like ATPases
A0U92_10640	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_10665	SM00858	A0U92_10665
A0U92_10705	SM00420	helix_turn_helix, Deoxyribose operon repressor
A0U92_10705	SM01134	A0U92_10705
A0U92_10710	SM00341	Helicase and RNase D C-terminal
A0U92_10710	SM00487	DEAD-like helicases superfamily
A0U92_10710	SM00490	helicase superfamily c-terminal domain
A0U92_10710	SM00956	A0U92_10710
A0U92_10720	SM00382	ATPases associated with a variety of cellular activities
A0U92_10725	SM00382	ATPases associated with a variety of cellular activities
A0U92_10870	SM00382	ATPases associated with a variety of cellular activities
A0U92_10940	SM00671	Sel1-like repeats.
A0U92_10980	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U92_10995	SM00464	Found in ATP-dependent protease La (LON)
A0U92_11005	SM00822	A0U92_11005
A0U92_11010	SM00342	helix_turn_helix, arabinose operon control protein
A0U92_11030	SM00478	endonuclease III
A0U92_11050	SM00028	Tetratricopeptide repeats
A0U92_11060	SM00382	ATPases associated with a variety of cellular activities
A0U92_11095	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A0U92_11115	SM00849	Metallo-beta-lactamase superfamily
A0U92_11160	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A0U92_11165	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A0U92_11200	SM00411	bacterial (prokaryotic) histone like domain
A0U92_11205	SM00382	ATPases associated with a variety of cellular activities
A0U92_11205	SM00464	Found in ATP-dependent protease La (LON)
A0U92_11210	SM00382	ATPases associated with a variety of cellular activities
A0U92_11210	SM00994	ClpX C4-type zinc finger
A0U92_11210	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U92_11240	SM00487	DEAD-like helicases superfamily
A0U92_11240	SM00490	helicase superfamily c-terminal domain
A0U92_11275	SM00893	Electron transfer flavoprotein domain
A0U92_11280	SM00893	Electron transfer flavoprotein domain
A0U92_11285	SM00052	Putative diguanylate phosphodiesterase
A0U92_11285	SM00267	diguanylate cyclase
A0U92_11295	SM00028	Tetratricopeptide repeats
A0U92_11325	SM00938	Nitrogen regulatory protein P-II
A0U92_11330	SM01230	A0U92_11330
A0U92_11380	SM01329	A0U92_11380
A0U92_11410	SM01007	Class II Aldolase and Adducin N-terminal domain
A0U92_11425	SM00062	Bacterial periplasmic substrate-binding proteins
A0U92_11430	SM00382	ATPases associated with a variety of cellular activities
A0U92_11480	SM00796	Allophanate hydrolase subunit 1
A0U92_11480	SM00797	Allophanate hydrolase subunit 2
A0U92_11480	SM00878	Biotin carboxylase C-terminal domain
A0U92_11500	SM00382	ATPases associated with a variety of cellular activities
A0U92_11610	SM01134	A0U92_11610
A0U92_11625	SM01350	A0U92_11625
A0U92_11635	SM00861	Transketolase, pyrimidine binding domain
A0U92_11640	SM01209	A0U92_11640
A0U92_11640	SM01210	A0U92_11640
A0U92_11800	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A0U92_11850	SM00344	helix_turn_helix ASNC type
A0U92_11865	SM00529	Helix-turn-helix diphteria tox regulatory element
A0U92_11880	SM00052	Putative diguanylate phosphodiesterase
A0U92_11880	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A0U92_11880	SM00091	PAS domain
A0U92_11880	SM00267	diguanylate cyclase
A0U92_11935	SM00411	bacterial (prokaryotic) histone like domain
A0U92_11975	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_12045	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U92_12055	SM00490	helicase superfamily c-terminal domain
A0U92_12090	SM00564	beta-propeller repeat
A0U92_12120	SM01234	A0U92_12120
A0U92_12165	SM00935	Outer membrane protein (OmpH-like)
A0U92_12175	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U92_12210	SM00358	Double-stranded RNA binding motif
A0U92_12210	SM00535	Ribonuclease III family
A0U92_12225	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0U92_12225	SM00954	Region found in RelA / SpoT proteins
A0U92_12230	SM01409	A0U92_12230
A0U92_12350	SM00411	bacterial (prokaryotic) histone like domain
A0U92_12480	SM00434	DNA Topoisomerase IV
A0U92_12620	SM00382	ATPases associated with a variety of cellular activities
A0U92_12685	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_12690	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_12750	SM00342	helix_turn_helix, arabinose operon control protein
A0U92_12780	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_12860	SM00448	cheY-homologous receiver domain
A0U92_12865	SM00382	ATPases associated with a variety of cellular activities
A0U92_12875	SM00387	Histidine kinase-like ATPases
A0U92_12945	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A0U92_13005	SM00363	S4 RNA-binding domain
A0U92_13010	SM00861	Transketolase, pyrimidine binding domain
A0U92_13050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U92_13050	SM00387	Histidine kinase-like ATPases
A0U92_13050	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_13055	SM00448	cheY-homologous receiver domain
A0U92_13055	SM00862	Transcriptional regulatory protein, C terminal
A0U92_13070	SM00382	ATPases associated with a variety of cellular activities
A0U92_13070	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U92_13125	SM00342	helix_turn_helix, arabinose operon control protein
A0U92_13145	SM00607	eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain
A0U92_13150	SM00838	Elongation factor G C-terminus
A0U92_13150	SM00889	Elongation factor G, domain IV
A0U92_13165	SM00382	ATPases associated with a variety of cellular activities
A0U92_13195	SM00487	DEAD-like helicases superfamily
A0U92_13195	SM00490	helicase superfamily c-terminal domain
A0U92_13250	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A0U92_13250	SM00465	GIY-YIG type nucleases (URI domain)
A0U92_13280	SM00448	cheY-homologous receiver domain
A0U92_13280	SM00862	Transcriptional regulatory protein, C terminal
A0U92_13340	SM00341	Helicase and RNase D C-terminal
A0U92_13340	SM00474	3'-5' exonuclease
A0U92_13355	SM00382	ATPases associated with a variety of cellular activities
A0U92_13395	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A0U92_13395	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A0U92_13405	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A0U92_13450	SM00911	HWE histidine kinase
A0U92_13460	SM00382	ATPases associated with a variety of cellular activities
A0U92_13545	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U92_13630	SM00052	Putative diguanylate phosphodiesterase
A0U92_13630	SM00267	diguanylate cyclase
A0U92_13715	SM01091	Transporter associated domain
A0U92_13780	SM00873	B3/4 domain
A0U92_13780	SM00874	tRNA synthetase B5 domain
A0U92_13780	SM00896	Ferredoxin-fold anticodon binding domain
A0U92_13790	SM00788	Adenylosuccinate synthetase
A0U92_13830	SM01329	A0U92_13830
A0U92_13875	SM00346	helix_turn_helix isocitrate lyase regulation
A0U92_13905	SM00346	helix_turn_helix isocitrate lyase regulation
A0U92_13940	SM00849	Metallo-beta-lactamase superfamily
A0U92_13955	SM00857	Resolvase, N terminal domain
A0U92_13960	SM00470	ParB-like nuclease domain
A0U92_13965	SM00470	ParB-like nuclease domain
A0U92_14000	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U92_14040	SM00382	ATPases associated with a variety of cellular activities
A0U92_14055	SM00841	Elongation factor P, C-terminal
A0U92_14055	SM01185	A0U92_14055
A0U92_14065	SM00422	helix_turn_helix, mercury resistance
A0U92_14070	SM00411	bacterial (prokaryotic) histone like domain
A0U92_14100	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U92_14100	SM00387	Histidine kinase-like ATPases
A0U92_14100	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_14105	SM00448	cheY-homologous receiver domain
A0U92_14105	SM00862	Transcriptional regulatory protein, C terminal
A0U92_14110	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U92_14155	SM00671	Sel1-like repeats.
A0U92_14165	SM00382	ATPases associated with a variety of cellular activities
A0U92_14175	SM01018	B12 binding domain
A0U92_14240	SM00357	Cold shock protein domain
A0U92_14240	SM00382	ATPases associated with a variety of cellular activities
A0U92_14240	SM00959	Rho termination factor, N-terminal domain
A0U92_14285	SM00855	Phosphoglycerate mutase family
A0U92_14380	SM00530	Helix-turn-helix XRE-family like proteins 
A0U92_14420	SM00422	helix_turn_helix, mercury resistance
A0U92_14455	SM00470	ParB-like nuclease domain
A0U92_14515	SM00746	metallochaperone-like domain
A0U92_14550	SM00320	WD40 repeats
A0U92_14555	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A0U92_14615	SM00346	helix_turn_helix isocitrate lyase regulation
A0U92_14700	SM00796	Allophanate hydrolase subunit 1
A0U92_14705	SM00797	Allophanate hydrolase subunit 2
A0U92_14720	SM00878	Biotin carboxylase C-terminal domain
A0U92_14785	SM00965	Secretin and TonB N terminus short domain
A0U92_14950	SM00448	cheY-homologous receiver domain
A0U92_14950	SM00862	Transcriptional regulatory protein, C terminal
A0U92_14955	SM00387	Histidine kinase-like ATPases
A0U92_14955	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_15095	SM00886	Stress responsive A/B Barrel Domain
A0U92_15130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0U92_15205	SM00382	ATPases associated with a variety of cellular activities
A0U92_15230	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U92_15310	SM00062	Bacterial periplasmic substrate-binding proteins
A0U92_15320	SM01007	Class II Aldolase and Adducin N-terminal domain
A0U92_15340	SM00062	Bacterial periplasmic substrate-binding proteins
A0U92_15350	SM00382	ATPases associated with a variety of cellular activities
A0U92_15360	SM00062	Bacterial periplasmic substrate-binding proteins
A0U92_15415	SM00479	A0U92_15415
A0U92_15420	SM00382	ATPases associated with a variety of cellular activities
A0U92_15460	SM00857	Resolvase, N terminal domain
A0U92_15475	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0U92_15525	SM00857	Resolvase, N terminal domain
A0U92_15695	SM00382	ATPases associated with a variety of cellular activities
A0U92_15700	SM00382	ATPases associated with a variety of cellular activities
A0U92_15705	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0U92_15715	SM00849	Metallo-beta-lactamase superfamily
A0U92_15770	SM01007	Class II Aldolase and Adducin N-terminal domain
A0U92_15775	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U92_15795	SM00903	Flavin reductase like domain
A0U92_15830	SM00564	beta-propeller repeat
A0U92_15860	SM00244	prohibitin homologues
A0U92_15865	SM00244	prohibitin homologues
A0U92_15870	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A0U92_15905	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A0U92_15970	SM00382	ATPases associated with a variety of cellular activities
A0U92_15985	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A0U92_16020	SM00028	Tetratricopeptide repeats
A0U92_16030	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A0U92_16050	SM00382	ATPases associated with a variety of cellular activities
A0U92_16070	SM00986	Uracil DNA glycosylase superfamily
A0U92_16070	SM00987	UreE urease accessory protein, C-terminal domain 
A0U92_16100	SM00448	cheY-homologous receiver domain
A0U92_16100	SM00862	Transcriptional regulatory protein, C terminal
A0U92_16105	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U92_16105	SM00387	Histidine kinase-like ATPases
A0U92_16105	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_16225	SM00382	ATPases associated with a variety of cellular activities
A0U92_16230	SM00382	ATPases associated with a variety of cellular activities
A0U92_16250	SM00387	Histidine kinase-like ATPases
A0U92_16250	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_16250	SM00448	cheY-homologous receiver domain
A0U92_16255	SM00421	helix_turn_helix, Lux Regulon
A0U92_16255	SM00448	cheY-homologous receiver domain
A0U92_16345	SM00490	helicase superfamily c-terminal domain
A0U92_16360	SM00470	ParB-like nuclease domain
A0U92_16375	SM01228	A0U92_16375
A0U92_16415	SM00487	DEAD-like helicases superfamily
A0U92_16415	SM00490	helicase superfamily c-terminal domain
A0U92_16415	SM00847	Helicase associated domain (HA2)  Add an annotation
A0U92_16420	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U92_16430	SM00387	Histidine kinase-like ATPases
A0U92_16430	SM00388	His Kinase A (phosphoacceptor) domain
A0U92_16435	SM00448	cheY-homologous receiver domain
A0U92_16435	SM00862	Transcriptional regulatory protein, C terminal
A0U92_16450	SM00271	DnaJ molecular chaperone homology domain
A0U92_16490	SM00062	Bacterial periplasmic substrate-binding proteins
A0U92_16500	SM00357	Cold shock protein domain
A0U92_16615	SM00932	Scaffold protein Nfu/NifU N terminal
A0U92_16665	SM00382	ATPases associated with a variety of cellular activities
A0U92_16715	SM00564	beta-propeller repeat
A0U92_16785	SM00487	DEAD-like helicases superfamily
A0U92_16785	SM00490	helicase superfamily c-terminal domain
A0U92_16800	SM00271	DnaJ molecular chaperone homology domain
