WG31_00045	SM00464	Found in ATP-dependent protease La (LON)
WG31_00075	SM00932	Scaffold protein Nfu/NifU N terminal
WG31_00095	SM01209	WG31_00095
WG31_00095	SM01210	WG31_00095
WG31_00125	SM00829	Enoylreductase
WG31_00140	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
WG31_00140	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
WG31_00145	SM00859	Semialdehyde dehydrogenase, NAD binding domain
WG31_00185	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
WG31_00190	SM00861	Transketolase, pyrimidine binding domain
WG31_00215	SM00382	ATPases associated with a variety of cellular activities
WG31_00255	SM00382	ATPases associated with a variety of cellular activities
WG31_00265	SM00493	WG31_00265
WG31_00275	SM00905	Dihydroneopterin aldolase
WG31_00295	SM00316	Ribosomal protein S1-like RNA-binding domain
WG31_00325	SM00937	WG31_00325
WG31_00380	SM00917	LeuA allosteric (dimerisation) domain
WG31_00400	SM00387	Histidine kinase-like ATPases
WG31_00400	SM00388	His Kinase A (phosphoacceptor) domain
WG31_00400	SM00448	cheY-homologous receiver domain
WG31_00420	SM00986	Uracil DNA glycosylase superfamily
WG31_00420	SM00987	UreE urease accessory protein, C-terminal domain 
WG31_00430	SM00564	beta-propeller repeat
WG31_00475	SM00490	helicase superfamily c-terminal domain
WG31_00485	SM00347	helix_turn_helix multiple antibiotic resistance protein
WG31_00530	SM00490	helicase superfamily c-terminal domain
WG31_00550	SM00919	Malic enzyme, NAD binding domain
WG31_00550	SM01274	WG31_00550
WG31_00555	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
WG31_00555	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
WG31_00595	SM00382	ATPases associated with a variety of cellular activities
WG31_00610	SM00341	Helicase and RNase D C-terminal
WG31_00610	SM00474	3'-5' exonuclease
WG31_00635	SM00382	ATPases associated with a variety of cellular activities
WG31_00665	SM00342	helix_turn_helix, arabinose operon control protein
WG31_00700	SM00357	Cold shock protein domain
WG31_00735	SM00421	helix_turn_helix, Lux Regulon
WG31_00735	SM00448	cheY-homologous receiver domain
WG31_00740	SM00387	Histidine kinase-like ATPases
WG31_00740	SM00388	His Kinase A (phosphoacceptor) domain
WG31_00740	SM00448	cheY-homologous receiver domain
WG31_00760	SM00382	ATPases associated with a variety of cellular activities
WG31_00765	SM00382	ATPases associated with a variety of cellular activities
WG31_00805	SM00857	Resolvase, N terminal domain
WG31_00840	SM00487	DEAD-like helicases superfamily
WG31_00890	SM00857	Resolvase, N terminal domain
WG31_00985	SM00347	helix_turn_helix multiple antibiotic resistance protein
WG31_01055	SM00028	Tetratricopeptide repeats
WG31_01080	SM00867	YceI-like domain 
WG31_01100	SM00382	ATPases associated with a variety of cellular activities
WG31_01120	SM00271	DnaJ molecular chaperone homology domain
WG31_01240	SM00487	DEAD-like helicases superfamily
WG31_01240	SM00490	helicase superfamily c-terminal domain
WG31_01335	SM01133	WG31_01335
WG31_01390	SM00382	ATPases associated with a variety of cellular activities
WG31_01390	SM01086	C-terminal, D2-small domain, of ClpB protein
WG31_01420	SM00387	Histidine kinase-like ATPases
WG31_01420	SM00388	His Kinase A (phosphoacceptor) domain
WG31_01425	SM00448	cheY-homologous receiver domain
WG31_01425	SM00862	Transcriptional regulatory protein, C terminal
WG31_01440	SM00271	DnaJ molecular chaperone homology domain
WG31_01460	SM00798	AICARFT/IMPCHase bienzyme
WG31_01460	SM00851	MGS-like domain
WG31_01490	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_01515	SM00357	Cold shock protein domain
WG31_01515	SM00382	ATPases associated with a variety of cellular activities
WG31_01515	SM00959	Rho termination factor, N-terminal domain
WG31_01545	SM00382	ATPases associated with a variety of cellular activities
WG31_01555	SM00788	Adenylosuccinate synthetase
WG31_01560	SM00448	cheY-homologous receiver domain
WG31_01560	SM00862	Transcriptional regulatory protein, C terminal
WG31_01565	SM00387	Histidine kinase-like ATPases
WG31_01565	SM00388	His Kinase A (phosphoacceptor) domain
WG31_01595	SM01091	Transporter associated domain
WG31_01600	SM00829	Enoylreductase
WG31_01605	SM00382	ATPases associated with a variety of cellular activities
WG31_01625	SM00822	WG31_01625
WG31_01630	SM00859	Semialdehyde dehydrogenase, NAD binding domain
WG31_01645	SM00387	Histidine kinase-like ATPases
WG31_01725	SM00479	WG31_01725
WG31_02075	SM00487	DEAD-like helicases superfamily
WG31_02100	SM00966	SpoVT / AbrB like domain 
WG31_02120	SM00822	WG31_02120
WG31_02120	SM00823	Phosphopantetheine attachment site
WG31_02120	SM00825	Beta-ketoacyl synthase
WG31_02120	SM00826	WG31_02120
WG31_02120	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
WG31_02120	SM00829	Enoylreductase
WG31_02245	SM00477	DNA/RNA non-specific endonuclease
WG31_02245	SM00892	DNA/RNA non-specific endonuclease
WG31_02260	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_02365	SM00450	Rhodanese Homology Domain
WG31_02440	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_02455	SM00861	Transketolase, pyrimidine binding domain
WG31_02470	SM01091	Transporter associated domain
WG31_02480	SM00986	Uracil DNA glycosylase superfamily
WG31_02480	SM00987	UreE urease accessory protein, C-terminal domain 
WG31_02485	SM00028	Tetratricopeptide repeats
WG31_02520	SM00382	ATPases associated with a variety of cellular activities
WG31_02530	SM01400	WG31_02530
WG31_02535	SM00855	Phosphoglycerate mutase family
WG31_02570	SM00822	WG31_02570
WG31_02605	SM00382	ATPases associated with a variety of cellular activities
WG31_02630	SM00421	helix_turn_helix, Lux Regulon
WG31_02770	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
WG31_02815	SM00857	Resolvase, N terminal domain
WG31_02825	SM00857	Resolvase, N terminal domain
WG31_02995	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_03100	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
WG31_03175	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_03205	SM00857	Resolvase, N terminal domain
WG31_03215	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_03245	SM00450	Rhodanese Homology Domain
WG31_03405	SM00822	WG31_03405
WG31_03485	SM00861	Transketolase, pyrimidine binding domain
WG31_03505	SM00320	WD40 repeats
WG31_03510	SM00833	Cobalamin synthesis protein cobW C-terminal domain
WG31_03640	SM01329	WG31_03640
WG31_03660	SM00938	Nitrogen regulatory protein P-II
WG31_03665	SM01230	WG31_03665
WG31_03675	SM00564	beta-propeller repeat
WG31_03690	SM00838	Elongation factor G C-terminus
WG31_03705	SM00487	DEAD-like helicases superfamily
WG31_03705	SM00490	helicase superfamily c-terminal domain
WG31_03715	SM00947	Carbonic anhydrase
WG31_03730	SM01409	WG31_03730
WG31_03735	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WG31_03735	SM00954	Region found in RelA / SpoT proteins
WG31_03750	SM00358	Double-stranded RNA binding motif
WG31_03750	SM00535	Ribonuclease III family
WG31_03785	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WG31_03795	SM00935	Outer membrane protein (OmpH-like)
WG31_03915	SM00382	ATPases associated with a variety of cellular activities
WG31_03930	SM00116	Domain in cystathionine beta-synthase and other proteins.
WG31_03935	SM00474	3'-5' exonuclease
WG31_03940	SM00967	RNA 2'-O ribose methyltransferase substrate binding
WG31_03955	SM00072	Guanylate kinase homologues.
WG31_03980	SM00382	ATPases associated with a variety of cellular activities
WG31_03995	SM00382	ATPases associated with a variety of cellular activities
WG31_04030	SM00345	helix_turn_helix gluconate operon transcriptional repressor
WG31_04030	SM00895	WG31_04030
WG31_04120	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WG31_04125	SM00487	DEAD-like helicases superfamily
WG31_04125	SM00490	helicase superfamily c-terminal domain
WG31_04125	SM00847	Helicase associated domain (HA2)  Add an annotation
WG31_04175	SM01007	Class II Aldolase and Adducin N-terminal domain
WG31_04190	SM00904	Riboflavin kinase
WG31_04210	SM00853	MutL C terminal dimerisation domain
WG31_04210	SM01340	WG31_04210
WG31_04225	SM00387	Histidine kinase-like ATPases
WG31_04225	SM00433	TopoisomeraseII
WG31_04260	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WG31_04260	SM00245	tail specific protease
WG31_04265	SM00955	WG31_04265
WG31_04270	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
WG31_04270	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
WG31_04270	SM00493	WG31_04270
WG31_04280	SM01207	WG31_04280
WG31_04315	SM00861	Transketolase, pyrimidine binding domain
WG31_04340	SM00996	S-adenosyl-L-homocysteine hydrolase
WG31_04340	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
WG31_04345	SM00563	Phosphate acyltransferases
WG31_04355	SM00849	Metallo-beta-lactamase superfamily
WG31_04405	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
WG31_04440	SM00852	Probable molybdopterin binding domain
WG31_04485	SM00855	Phosphoglycerate mutase family
WG31_04490	SM00978	WG31_04490
WG31_04500	SM01235	WG31_04500
WG31_04505	SM00463	Small MutS-related domain
WG31_04585	SM00342	helix_turn_helix, arabinose operon control protein
WG31_04640	SM00487	DEAD-like helicases superfamily
WG31_04770	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
WG31_04820	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
WG31_04825	SM00829	Enoylreductase
WG31_04880	SM00479	WG31_04880
WG31_04935	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
WG31_05100	SM00448	cheY-homologous receiver domain
WG31_05100	SM00862	Transcriptional regulatory protein, C terminal
WG31_05105	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WG31_05105	SM00387	Histidine kinase-like ATPases
WG31_05105	SM00388	His Kinase A (phosphoacceptor) domain
WG31_05125	SM00649	Ribosomal protein L11/L12
WG31_05155	SM00663	RNA polymerase I subunit A N-terminus
WG31_05175	SM01403	WG31_05175
WG31_05195	SM01382	WG31_05195
WG31_05195	SM01383	WG31_05195
WG31_05210	SM00322	K homology RNA-binding domain
WG31_05230	SM01374	WG31_05230
WG31_05235	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
WG31_05300	SM00662	RNA polymerases D
WG31_05320	SM00382	ATPases associated with a variety of cellular activities
WG31_05390	SM00382	ATPases associated with a variety of cellular activities
WG31_05405	SM00382	ATPases associated with a variety of cellular activities
WG31_05430	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WG31_05430	SM00245	tail specific protease
WG31_05460	SM00851	MGS-like domain
WG31_05460	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
WG31_05465	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
WG31_05475	SM00400	zinc finger
WG31_05475	SM00493	WG31_05475
WG31_05510	SM00650	Ribosomal RNA adenine dimethylases
WG31_05540	SM00382	ATPases associated with a variety of cellular activities
WG31_05545	SM00345	helix_turn_helix gluconate operon transcriptional repressor
WG31_05545	SM00895	WG31_05545
WG31_05585	SM00028	Tetratricopeptide repeats
WG31_05590	SM01058	CarD-like/TRCF domain
WG31_05615	SM00382	ATPases associated with a variety of cellular activities
WG31_05630	SM00387	Histidine kinase-like ATPases
WG31_05630	SM00388	His Kinase A (phosphoacceptor) domain
WG31_05635	SM00091	PAS domain
WG31_05635	SM00387	Histidine kinase-like ATPases
WG31_05635	SM00388	His Kinase A (phosphoacceptor) domain
WG31_05635	SM00448	cheY-homologous receiver domain
WG31_05645	SM00382	ATPases associated with a variety of cellular activities
WG31_05645	SM01086	C-terminal, D2-small domain, of ClpB protein
WG31_05655	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
WG31_05690	SM00873	B3/4 domain
WG31_05690	SM00874	tRNA synthetase B5 domain
WG31_05690	SM00896	Ferredoxin-fold anticodon binding domain
WG31_05710	SM00100	Cyclic nucleotide-monophosphate binding domain
WG31_05720	SM00363	S4 RNA-binding domain
WG31_05720	SM01390	WG31_05720
WG31_05735	SM01329	WG31_05735
WG31_05770	SM01001	AIR carboxylase
WG31_05865	SM00855	Phosphoglycerate mutase family
WG31_05870	SM00830	Chorismate mutase type II
WG31_05905	SM00116	Domain in cystathionine beta-synthase and other proteins.
WG31_05905	SM01091	Transporter associated domain
WG31_05920	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_05925	SM00563	Phosphate acyltransferases
WG31_05950	SM00278	Helix-hairpin-helix DNA-binding motif class 1
WG31_05950	SM00465	GIY-YIG type nucleases (URI domain)
WG31_06000	SM00852	Probable molybdopterin binding domain
WG31_06015	SM01192	WG31_06015
WG31_06015	SM01193	WG31_06015
WG31_06045	SM00487	DEAD-like helicases superfamily
WG31_06045	SM00490	helicase superfamily c-terminal domain
WG31_06055	SM00487	DEAD-like helicases superfamily
WG31_06055	SM00490	helicase superfamily c-terminal domain
WG31_06055	SM00982	WG31_06055
WG31_06055	SM01058	CarD-like/TRCF domain
WG31_06075	SM00327	von Willebrand factor (vWF) type A domain
WG31_06085	SM00271	DnaJ molecular chaperone homology domain
WG31_06120	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_06170	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_06185	SM00937	WG31_06185
WG31_06245	SM00936	Penicillin-binding protein 5, C-terminal domain 
WG31_06270	SM00849	Metallo-beta-lactamase superfamily
WG31_06320	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_06320	SM00876	Biotin and Thiamin Synthesis associated domain
WG31_06390	SM00825	Beta-ketoacyl synthase
WG31_06400	SM00822	WG31_06400
WG31_06405	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
WG31_06435	SM00357	Cold shock protein domain
WG31_06445	SM01130	WG31_06445
WG31_06475	SM00382	ATPases associated with a variety of cellular activities
WG31_06485	SM00450	Rhodanese Homology Domain
WG31_06500	SM00155	Phospholipase D. Active site motifs.
WG31_06530	SM01211	WG31_06530
WG31_06550	SM00998	Adenylosuccinate lyase C-terminus
WG31_06585	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_06600	SM00861	Transketolase, pyrimidine binding domain
WG31_06660	SM00387	Histidine kinase-like ATPases
WG31_06660	SM00433	TopoisomeraseII
WG31_06670	SM00480	DNA polymerase III beta subunit
WG31_06675	SM00382	ATPases associated with a variety of cellular activities
WG31_06675	SM00760	Bacterial dnaA protein helix-turn-helix domain
WG31_06685	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
WG31_06685	SM01232	WG31_06685
WG31_06710	SM00382	ATPases associated with a variety of cellular activities
WG31_06760	SM00822	WG31_06760
WG31_06805	SM00420	helix_turn_helix, Deoxyribose operon repressor
WG31_06805	SM01134	WG31_06805
WG31_06810	SM00341	Helicase and RNase D C-terminal
WG31_06810	SM00487	DEAD-like helicases superfamily
WG31_06810	SM00490	helicase superfamily c-terminal domain
WG31_06810	SM00956	WG31_06810
WG31_06820	SM00382	ATPases associated with a variety of cellular activities
WG31_06825	SM00382	ATPases associated with a variety of cellular activities
WG31_06830	SM00387	Histidine kinase-like ATPases
WG31_06850	SM00448	cheY-homologous receiver domain
WG31_06855	SM00382	ATPases associated with a variety of cellular activities
WG31_06865	SM00829	Enoylreductase
WG31_06905	SM00382	ATPases associated with a variety of cellular activities
WG31_06960	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
WG31_06965	SM01092	CO dehydrogenase flavoprotein C-terminal domain
WG31_07040	SM00382	ATPases associated with a variety of cellular activities
WG31_07085	SM01060	WG31_07085
WG31_07100	SM01068	Putative carbohydrate binding domain
WG31_07135	SM00382	ATPases associated with a variety of cellular activities
WG31_07215	SM00382	ATPases associated with a variety of cellular activities
WG31_07235	SM00796	Allophanate hydrolase subunit 1
WG31_07235	SM00797	Allophanate hydrolase subunit 2
WG31_07235	SM00878	Biotin carboxylase C-terminal domain
WG31_07290	SM00382	ATPases associated with a variety of cellular activities
WG31_07305	SM00529	Helix-turn-helix diphteria tox regulatory element
WG31_07360	SM00965	Secretin and TonB N terminus short domain
WG31_07375	SM00965	Secretin and TonB N terminus short domain
WG31_07390	SM00062	Bacterial periplasmic substrate-binding proteins
WG31_07395	SM00382	ATPases associated with a variety of cellular activities
WG31_07435	SM00965	Secretin and TonB N terminus short domain
WG31_07490	SM01359	WG31_07490
WG31_07490	SM01360	WG31_07490
WG31_07670	SM00886	Stress responsive A/B Barrel Domain
WG31_07695	SM00564	beta-propeller repeat
WG31_07750	SM00890	Domain of unknown function
WG31_07790	SM00852	Probable molybdopterin binding domain
WG31_07850	SM00861	Transketolase, pyrimidine binding domain
WG31_07855	SM00363	S4 RNA-binding domain
WG31_07900	SM00448	cheY-homologous receiver domain
WG31_07900	SM00862	Transcriptional regulatory protein, C terminal
WG31_07920	SM00116	Domain in cystathionine beta-synthase and other proteins.
WG31_07920	SM01240	WG31_07920
WG31_07940	SM00382	ATPases associated with a variety of cellular activities
WG31_07945	SM00382	ATPases associated with a variety of cellular activities
WG31_07955	SM00014	Acid phosphatase homologues
WG31_07990	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_08030	SM00382	ATPases associated with a variety of cellular activities
WG31_08035	SM00382	ATPases associated with a variety of cellular activities
WG31_08040	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
WG31_08050	SM00671	Sel1-like repeats.
WG31_08060	SM00870	WG31_08060
WG31_08090	SM00382	ATPases associated with a variety of cellular activities
WG31_08105	SM00829	Enoylreductase
WG31_08290	SM00422	helix_turn_helix, mercury resistance
WG31_08405	SM00346	helix_turn_helix isocitrate lyase regulation
WG31_08415	SM00382	ATPases associated with a variety of cellular activities
WG31_08430	SM00849	Metallo-beta-lactamase superfamily
WG31_08475	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
WG31_08480	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
WG31_08515	SM00411	bacterial (prokaryotic) histone like domain
WG31_08520	SM00382	ATPases associated with a variety of cellular activities
WG31_08520	SM00464	Found in ATP-dependent protease La (LON)
WG31_08525	SM00382	ATPases associated with a variety of cellular activities
WG31_08525	SM00994	ClpX C4-type zinc finger
WG31_08525	SM01086	C-terminal, D2-small domain, of ClpB protein
WG31_08555	SM00487	DEAD-like helicases superfamily
WG31_08555	SM00490	helicase superfamily c-terminal domain
WG31_08590	SM00382	ATPases associated with a variety of cellular activities
WG31_08620	SM00838	Elongation factor G C-terminus
WG31_08620	SM00889	Elongation factor G, domain IV
WG31_08635	SM00382	ATPases associated with a variety of cellular activities
WG31_08645	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WG31_08650	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
WG31_08650	SM00534	ATPase domain of DNA mismatch repair MUTS family
WG31_08655	SM00028	Tetratricopeptide repeats
WG31_08685	SM00978	WG31_08685
WG31_08730	SM00344	helix_turn_helix ASNC type
WG31_08750	SM00411	bacterial (prokaryotic) histone like domain
WG31_08755	SM00986	Uracil DNA glycosylase superfamily
WG31_08755	SM00987	UreE urease accessory protein, C-terminal domain 
WG31_08775	SM00422	helix_turn_helix, mercury resistance
WG31_08780	SM00411	bacterial (prokaryotic) histone like domain
WG31_08810	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WG31_08810	SM00387	Histidine kinase-like ATPases
WG31_08810	SM00388	His Kinase A (phosphoacceptor) domain
WG31_08815	SM00448	cheY-homologous receiver domain
WG31_08815	SM00862	Transcriptional regulatory protein, C terminal
WG31_08820	SM00347	helix_turn_helix multiple antibiotic resistance protein
WG31_08840	SM01329	WG31_08840
WG31_08875	SM00382	ATPases associated with a variety of cellular activities
WG31_08875	SM00962	SRP54-type protein, GTPase domain
WG31_08875	SM00963	SRP54-type protein, helical bundle domain
WG31_08895	SM00363	S4 RNA-binding domain
WG31_08900	SM00382	ATPases associated with a variety of cellular activities
WG31_08930	SM00382	ATPases associated with a variety of cellular activities
WG31_08935	SM00564	beta-propeller repeat
WG31_09005	SM00382	ATPases associated with a variety of cellular activities
WG31_09005	SM01086	C-terminal, D2-small domain, of ClpB protein
WG31_09025	SM00382	ATPases associated with a variety of cellular activities
WG31_09025	SM00448	cheY-homologous receiver domain
WG31_09030	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WG31_09030	SM00387	Histidine kinase-like ATPases
WG31_09030	SM00388	His Kinase A (phosphoacceptor) domain
WG31_09035	SM00382	ATPases associated with a variety of cellular activities
WG31_09035	SM00448	cheY-homologous receiver domain
WG31_09040	SM00091	PAS domain
WG31_09040	SM00387	Histidine kinase-like ATPases
WG31_09040	SM00388	His Kinase A (phosphoacceptor) domain
WG31_09125	SM00984	UDP binding domain
WG31_09130	SM00938	Nitrogen regulatory protein P-II
WG31_09135	SM00971	Serine acetyltransferase, N-terminal
WG31_09425	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_09485	SM00841	Elongation factor P, C-terminal
WG31_09485	SM01185	WG31_09485
WG31_09495	SM00491	WG31_09495
WG31_09500	SM00357	Cold shock protein domain
WG31_09510	SM00883	Chaperonin 10 Kd subunit
WG31_09595	SM00487	DEAD-like helicases superfamily
WG31_09595	SM00490	helicase superfamily c-terminal domain
WG31_09600	SM01323	WG31_09600
WG31_09645	SM00852	Probable molybdopterin binding domain
WG31_09805	SM00857	Resolvase, N terminal domain
WG31_09830	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
WG31_09930	SM00842	Cell division protein FtsA
WG31_09935	SM00864	Tubulin/FtsZ family, GTPase domain
WG31_09935	SM00865	Tubulin/FtsZ family, C-terminal domain
WG31_09955	SM00292	breast cancer carboxy-terminal domain
WG31_09955	SM00532	Ligase N family
WG31_10075	SM00487	DEAD-like helicases superfamily
WG31_10075	SM00490	helicase superfamily c-terminal domain
WG31_10105	SM01004	Delta-aminolevulinic acid dehydratase
WG31_10115	SM00434	DNA Topoisomerase IV
WG31_10155	SM00481	DNA polymerase alpha chain like domain
WG31_10195	SM00507	HNH nucleases
WG31_10215	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_10220	SM00562	WG31_10220
WG31_10225	SM00382	ATPases associated with a variety of cellular activities
WG31_10235	SM00448	cheY-homologous receiver domain
WG31_10235	SM00862	Transcriptional regulatory protein, C terminal
WG31_10240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WG31_10240	SM00387	Histidine kinase-like ATPases
WG31_10240	SM00388	His Kinase A (phosphoacceptor) domain
WG31_10255	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
WG31_10265	SM00028	Tetratricopeptide repeats
WG31_10345	SM00646	WG31_10345
WG31_10350	SM00316	Ribosomal protein S1-like RNA-binding domain
WG31_10365	SM00316	Ribosomal protein S1-like RNA-binding domain
WG31_10420	SM00460	Transglutaminase/protease-like homologues
WG31_10705	SM00836	DALR anticodon binding domain
WG31_10705	SM01016	Arginyl tRNA synthetase N terminal dom
WG31_10710	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WG31_10755	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_10800	SM00363	S4 RNA-binding domain
WG31_10810	SM00382	ATPases associated with a variety of cellular activities
WG31_10825	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
WG31_10825	SM00474	3'-5' exonuclease
WG31_10825	SM00475	5'-3' exonuclease
WG31_10825	SM00482	DNA polymerase A domain
WG31_10835	SM00563	Phosphate acyltransferases
WG31_10900	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
WG31_10970	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_10985	SM00382	ATPases associated with a variety of cellular activities
WG31_11020	SM00479	WG31_11020
WG31_11090	SM00344	helix_turn_helix ASNC type
WG31_11100	SM00344	helix_turn_helix ASNC type
WG31_11115	SM00347	helix_turn_helix multiple antibiotic resistance protein
WG31_11165	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_11230	SM00487	DEAD-like helicases superfamily
WG31_11230	SM00490	helicase superfamily c-terminal domain
WG31_11240	SM00857	Resolvase, N terminal domain
WG31_11270	SM00857	Resolvase, N terminal domain
WG31_11390	SM00855	Phosphoglycerate mutase family
WG31_11405	SM00833	Cobalamin synthesis protein cobW C-terminal domain
WG31_11415	SM00347	helix_turn_helix multiple antibiotic resistance protein
WG31_11435	SM00903	Flavin reductase like domain
WG31_11445	SM00382	ATPases associated with a variety of cellular activities
WG31_11560	SM00382	ATPases associated with a variety of cellular activities
WG31_11585	SM00248	ankyrin repeats
WG31_11590	SM00861	Transketolase, pyrimidine binding domain
WG31_11600	SM01350	WG31_11600
WG31_11645	SM00829	Enoylreductase
WG31_11660	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_11700	SM00382	ATPases associated with a variety of cellular activities
WG31_11705	SM00382	ATPases associated with a variety of cellular activities
WG31_11725	SM00387	Histidine kinase-like ATPases
WG31_11725	SM00388	His Kinase A (phosphoacceptor) domain
WG31_11725	SM00448	cheY-homologous receiver domain
WG31_11730	SM00421	helix_turn_helix, Lux Regulon
WG31_11730	SM00448	cheY-homologous receiver domain
WG31_11755	SM00988	UreE urease accessory protein, N-terminal domain
WG31_11825	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
WG31_11835	SM00849	Metallo-beta-lactamase superfamily
WG31_11910	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
WG31_11925	SM00347	helix_turn_helix multiple antibiotic resistance protein
WG31_11970	SM00849	Metallo-beta-lactamase superfamily
WG31_12050	SM00434	DNA Topoisomerase IV
WG31_12065	SM00316	Ribosomal protein S1-like RNA-binding domain
WG31_12065	SM00322	K homology RNA-binding domain
WG31_12070	SM01387	WG31_12070
WG31_12085	SM00382	ATPases associated with a variety of cellular activities
WG31_12115	SM00671	Sel1-like repeats.
WG31_12125	SM00382	ATPases associated with a variety of cellular activities
WG31_12135	SM01018	B12 binding domain
WG31_12210	SM00382	ATPases associated with a variety of cellular activities
WG31_12210	SM00962	SRP54-type protein, GTPase domain
WG31_12210	SM00963	SRP54-type protein, helical bundle domain
WG31_12215	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_12235	SM00487	DEAD-like helicases superfamily
WG31_12235	SM00490	helicase superfamily c-terminal domain
WG31_12275	SM00382	ATPases associated with a variety of cellular activities
WG31_12300	SM00829	Enoylreductase
WG31_12310	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WG31_12375	SM01005	Alanine racemase, C-terminal domain
WG31_12380	SM00344	helix_turn_helix ASNC type
WG31_12400	SM00316	Ribosomal protein S1-like RNA-binding domain
WG31_12400	SM00322	K homology RNA-binding domain
WG31_12415	SM00382	ATPases associated with a variety of cellular activities
WG31_12430	SM00062	Bacterial periplasmic substrate-binding proteins
WG31_12430	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
WG31_12435	SM00382	ATPases associated with a variety of cellular activities
WG31_12445	SM00382	ATPases associated with a variety of cellular activities
WG31_12485	SM00878	Biotin carboxylase C-terminal domain
WG31_12555	SM00732	Likely ribonuclease with RNase H fold.
WG31_12570	SM00845	GatB domain
WG31_12580	SM00382	ATPases associated with a variety of cellular activities
WG31_12585	SM00478	endonuclease III
WG31_12595	SM00478	endonuclease III
WG31_12675	SM00893	Electron transfer flavoprotein domain
WG31_12680	SM00893	Electron transfer flavoprotein domain
WG31_12695	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_12705	SM00100	Cyclic nucleotide-monophosphate binding domain
WG31_12705	SM00419	helix_turn_helix, cAMP Regulatory protein
WG31_12710	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WG31_12725	SM00363	S4 RNA-binding domain
WG31_12775	SM00855	Phosphoglycerate mutase family
WG31_12810	SM00382	ATPases associated with a variety of cellular activities
WG31_12810	SM00843	WG31_12810
WG31_12860	SM00840	WG31_12860
WG31_12900	SM00448	cheY-homologous receiver domain
WG31_12900	SM00862	Transcriptional regulatory protein, C terminal
WG31_12915	SM00382	ATPases associated with a variety of cellular activities
WG31_12960	SM00382	ATPases associated with a variety of cellular activities
WG31_12965	SM00278	Helix-hairpin-helix DNA-binding motif class 1
WG31_12980	SM00957	SecA DEAD-like domain
WG31_12980	SM00958	SecA preprotein cross-linking domain
WG31_13015	SM00271	DnaJ molecular chaperone homology domain
WG31_13050	SM00411	bacterial (prokaryotic) histone like domain
WG31_13145	SM00470	ParB-like nuclease domain
WG31_13160	SM01228	WG31_13160
WG31_13235	SM01040	BRO family, N-terminal domain
WG31_13240	SM00411	bacterial (prokaryotic) histone like domain
WG31_13285	SM00091	PAS domain
WG31_13405	SM00345	helix_turn_helix gluconate operon transcriptional repressor
WG31_13420	SM00729	Elongator protein 3, MiaB family, Radical SAM
WG31_13455	SM00822	WG31_13455
WG31_13555	SM00487	DEAD-like helicases superfamily
WG31_13590	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_13620	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
WG31_13690	SM00091	PAS domain
WG31_13755	SM00382	ATPases associated with a variety of cellular activities
WG31_13815	SM00422	helix_turn_helix, mercury resistance
WG31_13825	SM00382	ATPases associated with a variety of cellular activities
WG31_13875	SM00448	cheY-homologous receiver domain
WG31_13875	SM00862	Transcriptional regulatory protein, C terminal
WG31_13880	SM00387	Histidine kinase-like ATPases
WG31_13880	SM00388	His Kinase A (phosphoacceptor) domain
WG31_13905	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WG31_14025	SM00966	SpoVT / AbrB like domain 
WG31_14035	SM00966	SpoVT / AbrB like domain 
WG31_14105	SM00487	DEAD-like helicases superfamily
WG31_14145	SM00966	SpoVT / AbrB like domain 
WG31_14225	SM00470	ParB-like nuclease domain
WG31_14235	SM00487	DEAD-like helicases superfamily
WG31_14240	SM00470	ParB-like nuclease domain
WG31_14245	SM00530	Helix-turn-helix XRE-family like proteins 
WG31_14310	SM00966	SpoVT / AbrB like domain 
WG31_14355	SM01040	BRO family, N-terminal domain
WG31_14360	SM00411	bacterial (prokaryotic) histone like domain
WG31_14365	SM00857	Resolvase, N terminal domain
WG31_14430	SM00857	Resolvase, N terminal domain
WG31_14460	SM00966	SpoVT / AbrB like domain 
WG31_14550	SM00382	ATPases associated with a variety of cellular activities
WG31_14555	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
WG31_14575	SM00833	Cobalamin synthesis protein cobW C-terminal domain
WG31_14655	SM00966	SpoVT / AbrB like domain 
WG31_14730	SM00857	Resolvase, N terminal domain
WG31_14735	SM00857	Resolvase, N terminal domain
WG31_14790	SM00857	Resolvase, N terminal domain
