locus-tag class description APT_00001 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 APT_00003 PF07690 Major Facilitator Superfamily APT_00005 PF03966 Trm112p-like protein APT_00006 PF00004 ATPase family associated with various cellular activities (AAA) APT_00006 PF02190 ATP-dependent protease La (LON) substrate-binding domain APT_00006 PF05362 Lon protease (S16) C-terminal proteolytic domain APT_00007 PF00085 Thioredoxin APT_00009 PF17760 UvrA interaction domain APT_00009 PF17755 UvrA DNA-binding domain APT_00014 PF00881 Nitroreductase family APT_00016 PF00583 Acetyltransferase (GNAT) family APT_00017 PF02844 Phosphoribosylglycinamide synthetase, N domain APT_00017 PF02843 Phosphoribosylglycinamide synthetase, C domain APT_00017 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APT_00018 PF02601 Exonuclease VII, large subunit APT_00018 PF13742 OB-fold nucleic acid binding domain APT_00020 PF00266 Aminotransferase class-V APT_00021 PF00171 Aldehyde dehydrogenase family APT_00022 PF00107 Zinc-binding dehydrogenase APT_00022 PF08240 Alcohol dehydrogenase GroES-like domain APT_00023 PF02233 NAD(P) transhydrogenase beta subunit APT_00024 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APT_00025 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT_00025 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT_00026 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT_00026 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT_00027 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APT_00028 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APT_00029 PF00890 FAD binding domain APT_00029 PF02910 Fumarate reductase flavoprotein C-term APT_00030 PF13085 2Fe-2S iron-sulfur cluster binding domain APT_00032 PF00892 EamA-like transporter family APT_00033 PF00162 Phosphoglycerate kinase APT_00034 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT_00034 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT_00035 PF00456 Transketolase, thiamine diphosphate binding domain APT_00035 PF02780 Transketolase, C-terminal domain APT_00035 PF02779 Transketolase, pyrimidine binding domain APT_00037 PF00155 Aminotransferase class I and II APT_00038 PF13462 Thioredoxin APT_00040 PF00154 recA bacterial DNA recombination protein APT_00042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_00042 PF03459 TOBE domain APT_00043 PF04349 Periplasmic glucan biosynthesis protein, MdoG APT_00044 PF13632 Glycosyl transferase family group 2 APT_00045 PF01979 Amidohydrolase family APT_00046 PF07690 Major Facilitator Superfamily APT_00048 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding APT_00048 PF12170 DNA polymerase III tau subunit V interacting with alpha APT_00048 PF12169 DNA polymerase III subunits gamma and tau domain III APT_00049 PF02575 YbaB/EbfC DNA-binding family APT_00050 PF02132 RecR protein APT_00050 PF13662 Toprim domain APT_00052 PF02152 Dihydroneopterin aldolase APT_00054 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT_00055 PF02224 Cytidylate kinase APT_00056 PF00575 S1 RNA binding domain APT_00059 PF01725 Ham1 family APT_00060 PF01138 3' exoribonuclease family, domain 1 APT_00060 PF03725 3' exoribonuclease family, domain 2 APT_00061 PF01628 HrcA protein C terminal domain APT_00062 PF17092 Penicillin-binding protein OB-like domain APT_00062 PF00905 Penicillin binding protein transpeptidase domain APT_00062 PF00912 Transglycosylase APT_00063 PF03462 PCRF domain APT_00063 PF00472 RF-1 domain APT_00065 PF01618 MotA/TolQ/ExbB proton channel family APT_00066 PF02472 Biopolymer transport protein ExbD/TolR APT_00067 PF02472 Biopolymer transport protein ExbD/TolR APT_00069 PF01098 Cell cycle protein APT_00070 PF03717 Penicillin-binding Protein dimerisation domain APT_00070 PF00905 Penicillin binding protein transpeptidase domain APT_00074 PF08502 LeuA allosteric (dimerisation) domain APT_00074 PF00682 HMGL-like APT_00075 PF02628 Cytochrome oxidase assembly protein APT_00077 PF07690 Major Facilitator Superfamily APT_00078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_00078 PF08448 PAS fold APT_00078 PF13188 PAS domain APT_00078 PF00072 Response regulator receiver domain APT_00078 PF00512 His Kinase A (phospho-acceptor) domain APT_00079 PF00156 Phosphoribosyl transferase domain APT_00080 PF04632 Fusaric acid resistance protein family APT_00081 PF05161 MOFRL family APT_00081 PF13660 Domain of unknown function (DUF4147) APT_00082 PF03167 Uracil DNA glycosylase superfamily APT_00083 PF00034 Cytochrome c APT_00083 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_00084 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_00084 PF13360 PQQ-like domain APT_00086 PF01027 Inhibitor of apoptosis-promoting Bax1 APT_00087 PF06481 COX Aromatic Rich Motif APT_00087 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT_00088 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT_00089 PF00510 Cytochrome c oxidase subunit III APT_00090 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APT_00091 PF11953 Domain of unknown function (DUF3470) APT_00091 PF00037 4Fe-4S binding domain APT_00093 PF02789 Cytosol aminopeptidase family, N-terminal domain APT_00093 PF00883 Cytosol aminopeptidase family, catalytic domain APT_00096 PF00953 Glycosyl transferase family 4 APT_00097 PF02719 Polysaccharide biosynthesis protein APT_00098 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT_00100 PF01979 Amidohydrolase family APT_00101 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT_00101 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_00102 PF00970 Oxidoreductase FAD-binding domain APT_00102 PF00175 Oxidoreductase NAD-binding domain APT_00106 PF09335 SNARE associated Golgi protein APT_00107 PF00326 Prolyl oligopeptidase family APT_00108 PF03949 Malic enzyme, NAD binding domain APT_00108 PF00390 Malic enzyme, N-terminal domain APT_00109 PF02357 Transcription termination factor nusG APT_00109 PF00467 KOW motif APT_00111 PF00213 ATP synthase delta (OSCP) subunit APT_00112 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT_00112 PF00306 ATP synthase alpha/beta chain, C terminal domain APT_00112 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT_00113 PF00231 ATP synthase APT_00114 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT_00114 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT_00115 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APT_00116 PF14489 QueF-like protein APT_00117 PF00570 HRDC domain APT_00117 PF01612 3'-5' exonuclease APT_00118 PF00294 pfkB family carbohydrate kinase APT_00121 PF00324 Amino acid permease APT_00122 PF17850 CysA C-terminal regulatory domain APT_00122 PF12857 TOBE-like domain APT_00122 PF00005 ABC transporter APT_00123 PF00528 Binding-protein-dependent transport system inner membrane component APT_00124 PF00528 Binding-protein-dependent transport system inner membrane component APT_00128 PF02311 AraC-like ligand binding domain APT_00128 PF12833 Helix-turn-helix domain APT_00129 PF06751 Ethanolamine ammonia lyase large subunit (EutB) APT_00130 PF05985 Ethanolamine ammonia-lyase light chain (EutC) APT_00133 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT_00133 PF00529 HlyD membrane-fusion protein of T1SS APT_00134 PF00873 AcrB/AcrD/AcrF family APT_00135 PF02321 Outer membrane efflux protein APT_00136 PF00313 'Cold-shock' DNA-binding domain APT_00138 PF00593 TonB dependent receptor APT_00138 PF07660 Secretin and TonB N terminus short domain APT_00138 PF07715 TonB-dependent Receptor Plug Domain APT_00140 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT_00143 PF00795 Carbon-nitrogen hydrolase APT_00144 PF00072 Response regulator receiver domain APT_00144 PF00486 Transcriptional regulatory protein, C terminal APT_00145 PF09308 LuxQ, periplasmic APT_00145 PF00512 His Kinase A (phospho-acceptor) domain APT_00145 PF00072 Response regulator receiver domain APT_00145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_00149 PF00005 ABC transporter APT_00149 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT_00150 PF00005 ABC transporter APT_00156 PF00561 alpha/beta hydrolase fold APT_00157 PF09278 MerR, DNA binding APT_00157 PF00376 MerR family regulatory protein APT_00164 PF03692 Putative zinc- or iron-chelating domain APT_00167 PF08402 TOBE domain APT_00167 PF00005 ABC transporter APT_00172 PF00529 HlyD membrane-fusion protein of T1SS APT_00172 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT_00173 PF02321 Outer membrane efflux protein APT_00176 PF13249 Squalene-hopene cyclase N-terminal domain APT_00176 PF13243 Squalene-hopene cyclase C-terminal domain APT_00177 PF01593 Flavin containing amine oxidoreductase APT_00181 PF01370 NAD dependent epimerase/dehydratase family APT_00183 PF02153 Prephenate dehydrogenase APT_00185 PF00444 Ribosomal protein L36 APT_00186 PF03466 LysR substrate binding domain APT_00186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_00187 PF00578 AhpC/TSA family APT_00188 PF02627 Carboxymuconolactone decarboxylase family APT_00190 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APT_00191 PF00719 Inorganic pyrophosphatase APT_00192 PF00005 ABC transporter APT_00192 PF12848 ABC transporter APT_00193 PF13302 Acetyltransferase (GNAT) domain APT_00196 PF00226 DnaJ domain APT_00196 PF05099 Tellurite resistance protein TerB APT_00199 PF08331 Domain of unknown function (DUF1730) APT_00200 PF01702 Queuine tRNA-ribosyltransferase APT_00201 PF02547 Queuosine biosynthesis protein APT_00203 PF01161 Phosphatidylethanolamine-binding protein APT_00206 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APT_00206 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APT_00209 PF02867 Ribonucleotide reductase, barrel domain APT_00209 PF08471 Class II vitamin B12-dependent ribonucleotide reductase APT_00214 PF02358 Trehalose-phosphatase APT_00215 PF00982 Glycosyltransferase family 20 APT_00216 PF02600 Disulfide bond formation protein DsbB APT_00218 PF00293 NUDIX domain APT_00219 PF00248 Aldo/keto reductase family APT_00221 PF12344 Ultra-violet resistance protein B APT_00221 PF02151 UvrB/uvrC motif APT_00221 PF04851 Type III restriction enzyme, res subunit APT_00221 PF00271 Helicase conserved C-terminal domain APT_00221 PF17757 UvrB interaction domain APT_00223 PF00675 Insulinase (Peptidase family M16) APT_00223 PF05193 Peptidase M16 inactive domain APT_00229 PF00324 Amino acid permease APT_00230 PF00817 impB/mucB/samB family APT_00230 PF11799 impB/mucB/samB family C-terminal domain APT_00233 PF01180 Dihydroorotate dehydrogenase APT_00236 PF13277 YmdB-like protein APT_00237 PF01812 5-formyltetrahydrofolate cyclo-ligase family APT_00241 PF01791 DeoC/LacD family aldolase APT_00242 PF02581 Thiamine monophosphate synthase APT_00246 PF00152 tRNA synthetases class II (D, K and N) APT_00247 PF12544 Lysine-2,3-aminomutase APT_00247 PF04055 Radical SAM superfamily APT_00249 PF00557 Metallopeptidase family M24 APT_00250 PF07943 Penicillin-binding protein 5, C-terminal domain APT_00250 PF00768 D-alanyl-D-alanine carboxypeptidase APT_00251 PF02617 ATP-dependent Clp protease adaptor protein ClpS APT_00252 PF07724 AAA domain (Cdc48 subfamily) APT_00252 PF00004 ATPase family associated with various cellular activities (AAA) APT_00252 PF10431 C-terminal, D2-small domain, of ClpB protein APT_00252 PF17871 AAA lid domain APT_00252 PF02861 Clp amino terminal domain, pathogenicity island component APT_00254 PF03976 Polyphosphate kinase 2 (PPK2) APT_00255 PF02622 Uncharacterized ACR, COG1678 APT_00256 PF03668 P-loop ATPase protein family APT_00258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_00258 PF00512 His Kinase A (phospho-acceptor) domain APT_00258 PF13755 Sensor N-terminal transmembrane domain APT_00258 PF13756 Stimulus-sensing domain APT_00258 PF00672 HAMP domain APT_00259 PF00486 Transcriptional regulatory protein, C terminal APT_00259 PF00072 Response regulator receiver domain APT_00260 PF01025 GrpE APT_00261 PF00012 Hsp70 protein APT_00262 PF00226 DnaJ domain APT_00262 PF00684 DnaJ central domain APT_00262 PF01556 DnaJ C terminal domain APT_00263 PF05173 Dihydrodipicolinate reductase, C-terminus APT_00263 PF01113 Dihydrodipicolinate reductase, N-terminus APT_00264 PF02773 S-adenosylmethionine synthetase, C-terminal domain APT_00264 PF00438 S-adenosylmethionine synthetase, N-terminal domain APT_00264 PF02772 S-adenosylmethionine synthetase, central domain APT_00265 PF02390 Putative methyltransferase APT_00266 PF01808 AICARFT/IMPCHase bienzyme APT_00266 PF02142 MGS-like domain APT_00269 PF00892 EamA-like transporter family APT_00270 PF02092 Glycyl-tRNA synthetase beta subunit APT_00270 PF05746 DALR anticodon binding domain APT_00271 PF02091 Glycyl-tRNA synthetase alpha subunit APT_00273 PF01381 Helix-turn-helix APT_00274 PF00795 Carbon-nitrogen hydrolase APT_00276 PF01475 Ferric uptake regulator family APT_00278 PF07497 Rho termination factor, RNA-binding domain APT_00278 PF07498 Rho termination factor, N-terminal domain APT_00278 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT_00280 PF01544 CorA-like Mg2+ transporter protein APT_00281 PF00291 Pyridoxal-phosphate dependent enzyme APT_00282 PF00290 Tryptophan synthase alpha chain APT_00283 PF03358 NADPH-dependent FMN reductase APT_00283 PF04205 FMN-binding domain APT_00283 PF00890 FAD binding domain APT_00285 PF13393 Histidyl-tRNA synthetase APT_00286 PF00709 Adenylosuccinate synthetase APT_00287 PF00072 Response regulator receiver domain APT_00287 PF00486 Transcriptional regulatory protein, C terminal APT_00288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_00288 PF00512 His Kinase A (phospho-acceptor) domain APT_00288 PF00989 PAS fold APT_00288 PF11808 Phosphate regulon sensor protein PhoR APT_00289 PF12849 PBP superfamily domain APT_00293 PF00328 Histidine phosphatase superfamily (branch 2) APT_00294 PF01595 Cyclin M transmembrane N-terminal domain APT_00294 PF03471 Transporter associated domain APT_00294 PF00571 CBS domain APT_00295 PF08240 Alcohol dehydrogenase GroES-like domain APT_00295 PF00107 Zinc-binding dehydrogenase APT_00296 PF03412 Peptidase C39 family APT_00296 PF00664 ABC transporter transmembrane region APT_00296 PF00005 ABC transporter APT_00301 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT_00302 PF03819 MazG nucleotide pyrophosphohydrolase domain APT_00304 PF00183 Hsp90 protein APT_00318 PF01757 Acyltransferase family APT_00323 PF01381 Helix-turn-helix APT_00323 PF09856 Predicted transcriptional regulator (DUF2083) APT_00323 PF06114 IrrE N-terminal-like domain APT_00324 PF03972 MmgE/PrpD family APT_00325 PF00285 Citrate synthase, C-terminal domain APT_00327 PF00501 AMP-binding enzyme APT_00327 PF13193 AMP-binding enzyme C-terminal domain APT_00327 PF16177 Acetyl-coenzyme A synthetase N-terminus APT_00328 PF07690 Major Facilitator Superfamily APT_00331 PF02073 Thermophilic metalloprotease (M29) APT_00334 PF02938 GAD domain APT_00334 PF00152 tRNA synthetases class II (D, K and N) APT_00334 PF01336 OB-fold nucleic acid binding domain APT_00335 PF01212 Beta-eliminating lyase APT_00336 PF01386 Ribosomal L25p family APT_00336 PF14693 Ribosomal protein TL5, C-terminal domain APT_00337 PF01195 Peptidyl-tRNA hydrolase APT_00338 PF06071 Protein of unknown function (DUF933) APT_00338 PF01926 50S ribosome-binding GTPase APT_00339 PF00171 Aldehyde dehydrogenase family APT_00340 PF01467 Cytidylyltransferase-like APT_00342 PF02590 Predicted SPOUT methyltransferase APT_00344 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_00344 PF03466 LysR substrate binding domain APT_00345 PF03306 Alpha-acetolactate decarboxylase APT_00346 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_00346 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_00346 PF00205 Thiamine pyrophosphate enzyme, central domain APT_00348 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_00348 PF00205 Thiamine pyrophosphate enzyme, central domain APT_00348 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_00349 PF02754 Cysteine-rich domain APT_00350 PF02589 LUD domain APT_00350 PF13183 4Fe-4S dicluster domain APT_00350 PF11870 Domain of unknown function (DUF3390) APT_00352 PF13536 Putative multidrug resistance efflux transporter APT_00353 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT_00354 PF00692 dUTPase APT_00358 PF04794 YdjC-like protein APT_00362 PF02780 Transketolase, C-terminal domain APT_00362 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APT_00362 PF02779 Transketolase, pyrimidine binding domain APT_00363 PF06463 Molybdenum Cofactor Synthesis C APT_00363 PF04055 Radical SAM superfamily APT_00364 PF00571 CBS domain APT_00364 PF03471 Transporter associated domain APT_00364 PF01595 Cyclin M transmembrane N-terminal domain APT_00365 PF01464 Transglycosylase SLT domain APT_00366 PF03167 Uracil DNA glycosylase superfamily APT_00368 PF08544 GHMP kinases C terminal APT_00368 PF00288 GHMP kinases N terminal domain APT_00371 PF00106 short chain dehydrogenase APT_00374 PF01554 MatE APT_00375 PF00005 ABC transporter APT_00377 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT_00377 PF14572 Phosphoribosyl synthetase-associated domain APT_00388 PF03466 LysR substrate binding domain APT_00388 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_00389 PF00999 Sodium/hydrogen exchanger family APT_00391 PF00593 TonB dependent receptor APT_00391 PF07715 TonB-dependent Receptor Plug Domain APT_00393 PF01032 FecCD transport family APT_00394 PF00005 ABC transporter APT_00395 PF00728 Glycosyl hydrolase family 20, catalytic domain APT_00395 PF07691 PA14 domain APT_00395 PF02838 Glycosyl hydrolase family 20, domain 2 APT_00396 PF01869 BadF/BadG/BcrA/BcrD ATPase family APT_00397 PF13580 SIS domain APT_00399 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT_00403 PF00875 DNA photolyase APT_00403 PF03441 FAD binding domain of DNA photolyase APT_00404 PF01641 SelR domain APT_00407 PF00155 Aminotransferase class I and II APT_00410 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APT_00410 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APT_00414 PF03466 LysR substrate binding domain APT_00414 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_00416 PF07291 Methylamine utilisation protein MauE APT_00417 PF00578 AhpC/TSA family APT_00418 PF02975 Methylamine dehydrogenase, L chain APT_00421 PF00578 AhpC/TSA family APT_00423 PF00248 Aldo/keto reductase family APT_00424 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_00424 PF03466 LysR substrate binding domain APT_00425 PF00171 Aldehyde dehydrogenase family APT_00426 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_00426 PF00034 Cytochrome c APT_00427 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_00428 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_00428 PF01799 [2Fe-2S] binding domain APT_00439 PF02325 YGGT family APT_00455 PF07715 TonB-dependent Receptor Plug Domain APT_00455 PF00593 TonB dependent receptor APT_00473 PF02796 Helix-turn-helix domain of resolvase APT_00473 PF00239 Resolvase, N terminal domain APT_00476 PF01757 Acyltransferase family APT_00505 PF00999 Sodium/hydrogen exchanger family APT_00511 PF00551 Formyl transferase APT_00512 PF04343 Protein of unknown function, DUF488 APT_00513 PF02082 Transcriptional regulator APT_00514 PF00106 short chain dehydrogenase APT_00515 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APT_00519 PF03061 Thioesterase superfamily APT_00522 PF05649 Peptidase family M13 APT_00522 PF01431 Peptidase family M13 APT_00524 PF17938 Tetracyclin repressor-like, C-terminal domain APT_00524 PF00440 Bacterial regulatory proteins, tetR family APT_00525 PF01144 Coenzyme A transferase APT_00526 PF05161 MOFRL family APT_00526 PF13660 Domain of unknown function (DUF4147) APT_00527 PF02770 Acyl-CoA dehydrogenase, middle domain APT_00527 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT_00527 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT_00531 PF01012 Electron transfer flavoprotein domain APT_00532 PF01012 Electron transfer flavoprotein domain APT_00532 PF00766 Electron transfer flavoprotein FAD-binding domain APT_00533 PF00171 Aldehyde dehydrogenase family APT_00534 PF05199 GMC oxidoreductase APT_00534 PF00732 GMC oxidoreductase APT_00535 PF07690 Major Facilitator Superfamily APT_00536 PF04966 Carbohydrate-selective porin, OprB family APT_00539 PF03976 Polyphosphate kinase 2 (PPK2) APT_00540 PF01384 Phosphate transporter family APT_00542 PF00676 Dehydrogenase E1 component APT_00543 PF02779 Transketolase, pyrimidine binding domain APT_00543 PF02780 Transketolase, C-terminal domain APT_00544 PF00364 Biotin-requiring enzyme APT_00544 PF00561 alpha/beta hydrolase fold APT_00545 PF00011 Hsp20/alpha crystallin family APT_00547 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_00549 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT_00549 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_00550 PF00654 Voltage gated chloride channel APT_00551 PF16916 Dimerisation domain of Zinc Transporter APT_00551 PF01545 Cation efflux family APT_00552 PF01545 Cation efflux family APT_00554 PF00561 alpha/beta hydrolase fold APT_00557 PF03169 OPT oligopeptide transporter protein APT_00563 PF00899 ThiF family APT_00565 PF02887 Pyruvate kinase, alpha/beta domain APT_00565 PF00224 Pyruvate kinase, barrel domain APT_00573 PF01266 FAD dependent oxidoreductase APT_00574 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_00575 PF00180 Isocitrate/isopropylmalate dehydrogenase APT_00577 PF00155 Aminotransferase class I and II APT_00578 PF00543 Nitrogen regulatory protein P-II APT_00579 PF00120 Glutamine synthetase, catalytic domain APT_00579 PF03951 Glutamine synthetase, beta-Grasp domain APT_00581 PF01011 PQQ enzyme repeat APT_00584 PF00679 Elongation factor G C-terminus APT_00584 PF00009 Elongation factor Tu GTP binding domain APT_00584 PF03144 Elongation factor Tu domain 2 APT_00584 PF06421 GTP-binding protein LepA C-terminus APT_00585 PF00561 alpha/beta hydrolase fold APT_00586 PF00561 alpha/beta hydrolase fold APT_00586 PF07021 Methionine biosynthesis protein MetW APT_00587 PF00271 Helicase conserved C-terminal domain APT_00587 PF00270 DEAD/DEAH box helicase APT_00589 PF00484 Carbonic anhydrase APT_00591 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APT_00592 PF01192 RNA polymerase Rpb6 APT_00593 PF13291 ACT domain APT_00593 PF04607 Region found in RelA / SpoT proteins APT_00593 PF02824 TGS domain APT_00594 PF01648 4'-phosphopantetheinyl transferase superfamily APT_00595 PF10502 Signal peptidase, peptidase S26 APT_00596 PF14622 Ribonuclease-III-like APT_00596 PF00035 Double-stranded RNA binding motif APT_00597 PF01926 50S ribosome-binding GTPase APT_00597 PF07650 KH domain APT_00598 PF00696 Amino acid kinase family APT_00599 PF01765 Ribosome recycling factor APT_00600 PF01255 Putative undecaprenyl diphosphate synthase APT_00602 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APT_00602 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APT_00602 PF13288 DXP reductoisomerase C-terminal domain APT_00603 PF17820 PDZ domain APT_00603 PF02163 Peptidase family M50 APT_00604 PF07244 Surface antigen variable number repeat APT_00604 PF01103 Surface antigen APT_00606 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APT_00606 PF00132 Bacterial transferase hexapeptide (six repeats) APT_00607 PF07977 FabA-like domain APT_00608 PF00132 Bacterial transferase hexapeptide (six repeats) APT_00608 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APT_00609 PF17930 LpxI N-terminal domain APT_00609 PF06230 LpxI C-terminal domain APT_00610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT_00612 PF00468 Ribosomal protein L34 APT_00613 PF00825 Ribonuclease P APT_00614 PF14849 YidC periplasmic domain APT_00614 PF02096 60Kd inner membrane protein APT_00615 PF01926 50S ribosome-binding GTPase APT_00616 PF00696 Amino acid kinase family APT_00617 PF14602 Hexapeptide repeat of succinyl-transferase APT_00617 PF00132 Bacterial transferase hexapeptide (six repeats) APT_00617 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APT_00618 PF07687 Peptidase dimerisation domain APT_00618 PF01546 Peptidase family M20/M25/M40 APT_00620 PF01416 tRNA pseudouridine synthase APT_00621 PF00551 Formyl transferase APT_00621 PF02911 Formyl transferase, C-terminal domain APT_00622 PF01327 Polypeptide deformylase APT_00623 PF00011 Hsp20/alpha crystallin family APT_00625 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APT_00625 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APT_00627 PF03476 MOSC N-terminal beta barrel domain APT_00627 PF03473 MOSC domain APT_00627 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_00628 PF00005 ABC transporter APT_00631 PF00571 CBS domain APT_00631 PF01380 SIS domain APT_00632 PF01612 3'-5' exonuclease APT_00632 PF00570 HRDC domain APT_00633 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT_00633 PF00588 SpoU rRNA Methylase family APT_00635 PF00106 short chain dehydrogenase APT_00636 PF00625 Guanylate kinase APT_00637 PF00294 pfkB family carbohydrate kinase APT_00637 PF01467 Cytidylyltransferase-like APT_00639 PF03796 DnaB-like helicase C terminal domain APT_00639 PF00772 DnaB-like helicase N terminal domain APT_00641 PF12794 Mechanosensitive ion channel inner membrane domain 1 APT_00641 PF00924 Mechanosensitive ion channel APT_00641 PF12795 Mechanosensitive ion channel porin domain APT_00643 PF00005 ABC transporter APT_00644 PF02405 Permease MlaE APT_00646 PF06745 KaiC APT_00646 PF18073 Rubredoxin metal binding domain APT_00650 PF00324 Amino acid permease APT_00652 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APT_00652 PF14850 DNA-binding domain of Proline dehydrogenase APT_00652 PF01619 Proline dehydrogenase APT_00652 PF00171 Aldehyde dehydrogenase family APT_00655 PF00501 AMP-binding enzyme APT_00655 PF16177 Acetyl-coenzyme A synthetase N-terminus APT_00655 PF13193 AMP-binding enzyme C-terminal domain APT_00661 PF01923 Cobalamin adenosyltransferase APT_00664 PF01565 FAD binding domain APT_00664 PF02913 FAD linked oxidases, C-terminal domain APT_00666 PF01300 Telomere recombination APT_00666 PF03481 Putative GTP-binding controlling metal-binding APT_00667 PF00459 Inositol monophosphatase family APT_00668 PF00883 Cytosol aminopeptidase family, catalytic domain APT_00668 PF02789 Cytosol aminopeptidase family, N-terminal domain APT_00670 PF00248 Aldo/keto reductase family APT_00671 PF13180 PDZ domain APT_00672 PF00271 Helicase conserved C-terminal domain APT_00672 PF08482 ATP-dependent helicase C-terminal APT_00672 PF00270 DEAD/DEAH box helicase APT_00672 PF04408 Helicase associated domain (HA2) APT_00674 PF01430 Hsp33 protein APT_00677 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT_00677 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT_00678 PF00202 Aminotransferase class-III APT_00681 PF02416 mttA/Hcf106 family APT_00682 PF00596 Class II Aldolase and Adducin N-terminal domain APT_00683 PF03079 ARD/ARD' family APT_00685 PF06574 FAD synthetase APT_00685 PF01687 Riboflavin kinase APT_00686 PF00133 tRNA synthetases class I (I, L, M and V) APT_00686 PF08264 Anticodon-binding domain of tRNA APT_00686 PF06827 Zinc finger found in FPG and IleRS APT_00687 PF01252 Signal peptidase (SPase) II APT_00689 PF08676 MutL C terminal dimerisation domain APT_00689 PF01119 DNA mismatch repair protein, C-terminal domain APT_00690 PF00361 Proton-conducting membrane transporter APT_00690 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APT_00691 PF00892 EamA-like transporter family APT_00693 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_00693 PF00204 DNA gyrase B APT_00693 PF00986 DNA gyrase B subunit, carboxyl terminus APT_00693 PF01751 Toprim domain APT_00696 PF02082 Transcriptional regulator APT_00697 PF00291 Pyridoxal-phosphate dependent enzyme APT_00698 PF00691 OmpA family APT_00700 PF13180 PDZ domain APT_00700 PF03572 Peptidase family S41 APT_00701 PF08206 Ribonuclease B OB domain APT_00701 PF00773 RNB domain APT_00701 PF08461 Ribonuclease R winged-helix domain APT_00701 PF17876 Cold shock domain APT_00701 PF00575 S1 RNA binding domain APT_00702 PF01751 Toprim domain APT_00702 PF01396 Topoisomerase DNA binding C4 zinc finger APT_00702 PF13368 Topoisomerase C-terminal repeat APT_00702 PF01131 DNA topoisomerase APT_00703 PF17782 DprA winged helix domain APT_00703 PF02481 DNA recombination-mediator protein A APT_00704 PF02660 Glycerol-3-phosphate acyltransferase APT_00705 PF01979 Amidohydrolase family APT_00706 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT_00706 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT_00707 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT_00708 PF00753 Metallo-beta-lactamase superfamily APT_00708 PF13567 Domain of unknown function (DUF4131) APT_00708 PF03772 Competence protein APT_00709 PF02627 Carboxymuconolactone decarboxylase family APT_00710 PF03969 AFG1-like ATPase APT_00711 PF16078 2-oxoglutarate dehydrogenase N-terminus APT_00711 PF16870 2-oxoglutarate dehydrogenase C-terminal APT_00711 PF00676 Dehydrogenase E1 component APT_00711 PF02779 Transketolase, pyrimidine binding domain APT_00712 PF02817 e3 binding domain APT_00712 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT_00712 PF00364 Biotin-requiring enzyme APT_00713 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT_00713 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_00716 PF05221 S-adenosyl-L-homocysteine hydrolase APT_00716 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APT_00721 PF16123 Hydroxyacylglutathione hydrolase C-terminus APT_00721 PF00753 Metallo-beta-lactamase superfamily APT_00727 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT_00728 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT_00729 PF01066 CDP-alcohol phosphatidyltransferase APT_00730 PF02666 Phosphatidylserine decarboxylase APT_00731 PF02272 DHHA1 domain APT_00731 PF01411 tRNA synthetases class II (A) APT_00731 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT_00733 PF00691 OmpA family APT_00734 PF01761 3-dehydroquinate synthase APT_00736 PF00589 Phage integrase family APT_00736 PF02899 Phage integrase, N-terminal SAM-like domain APT_00737 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APT_00738 PF02464 Competence-damaged protein APT_00738 PF18146 Damage-inducible protein CinA KH domain APT_00738 PF00994 Probable molybdopterin binding domain APT_00739 PF01921 tRNA synthetases class I (K) APT_00742 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APT_00743 PF00814 Glycoprotease family APT_00744 PF03900 Porphobilinogen deaminase, C-terminal domain APT_00744 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APT_00746 PF02556 Preprotein translocase subunit SecB APT_00747 PF00934 PE family APT_00747 PF00300 Histidine phosphatase superfamily (branch 1) APT_00749 PF01555 DNA methylase APT_00750 PF03150 Di-haem cytochrome c peroxidase APT_00750 PF00034 Cytochrome c APT_00751 PF00488 MutS domain V APT_00751 PF01713 Smr domain APT_00753 PF01218 Coproporphyrinogen III oxidase APT_00754 PF00033 Cytochrome b/b6/petB APT_00754 PF00032 Cytochrome b(C-terminal)/b6/petD APT_00754 PF02167 Cytochrome C1 family APT_00755 PF00033 Cytochrome b/b6/petB APT_00755 PF02167 Cytochrome C1 family APT_00755 PF00032 Cytochrome b(C-terminal)/b6/petD APT_00756 PF01048 Phosphorylase superfamily APT_00760 PF00881 Nitroreductase family APT_00761 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT_00762 PF00171 Aldehyde dehydrogenase family APT_00773 PF00589 Phage integrase family APT_00773 PF13356 Arm DNA-binding domain APT_00803 PF02548 Ketopantoate hydroxymethyltransferase APT_00804 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT_00805 PF01022 Bacterial regulatory protein, arsR family APT_00806 PF08240 Alcohol dehydrogenase GroES-like domain APT_00807 PF00089 Trypsin APT_00808 PF16363 GDP-mannose 4,6 dehydratase APT_00810 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT_00810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT_00811 PF14698 Argininosuccinate lyase C-terminal APT_00811 PF00206 Lyase APT_00814 PF01488 Shikimate / quinate 5-dehydrogenase APT_00814 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APT_00814 PF08501 Shikimate dehydrogenase substrate binding domain APT_00815 PF01121 Dephospho-CoA kinase APT_00816 PF00929 Exonuclease APT_00818 PF00534 Glycosyl transferases group 1 APT_00818 PF13579 Glycosyl transferase 4-like domain APT_00820 PF00834 Ribulose-phosphate 3 epimerase family APT_00821 PF01189 16S rRNA methyltransferase RsmB/F APT_00821 PF01029 NusB family APT_00822 PF00551 Formyl transferase APT_00823 PF02769 AIR synthase related protein, C-terminal domain APT_00823 PF00586 AIR synthase related protein, N-terminal domain APT_00825 PF02503 Polyphosphate kinase middle domain APT_00825 PF17941 Polyphosphate kinase C-terminal domain 1 APT_00825 PF13090 Polyphosphate kinase C-terminal domain 2 APT_00825 PF13089 Polyphosphate kinase N-terminal domain APT_00826 PF02541 Ppx/GppA phosphatase family APT_00829 PF00005 ABC transporter APT_00833 PF07885 Ion channel APT_00833 PF17655 Inward rectifier potassium channel C-terminal domain APT_00834 PF04632 Fusaric acid resistance protein family APT_00835 PF04632 Fusaric acid resistance protein family APT_00839 PF03918 Cytochrome C biogenesis protein APT_00840 PF08534 Redoxin APT_00841 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APT_00841 PF01578 Cytochrome C assembly protein APT_00842 PF03100 CcmE APT_00844 PF01578 Cytochrome C assembly protein APT_00851 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT_00851 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT_00852 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APT_00857 PF03710 Glutamate-ammonia ligase adenylyltransferase APT_00857 PF08335 GlnD PII-uridylyltransferase APT_00858 PF00578 AhpC/TSA family APT_00860 PF00083 Sugar (and other) transporter APT_00862 PF02646 RmuC family APT_00863 PF00486 Transcriptional regulatory protein, C terminal APT_00863 PF00072 Response regulator receiver domain APT_00864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_00864 PF00512 His Kinase A (phospho-acceptor) domain APT_00865 PF00873 AcrB/AcrD/AcrF family APT_00866 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT_00867 PF02321 Outer membrane efflux protein APT_00868 PF00298 Ribosomal protein L11, RNA binding domain APT_00868 PF03946 Ribosomal protein L11, N-terminal domain APT_00869 PF00687 Ribosomal protein L1p/L10e family APT_00870 PF00466 Ribosomal protein L10 APT_00871 PF00542 Ribosomal protein L7/L12 C-terminal domain APT_00871 PF16320 Ribosomal protein L7/L12 dimerisation domain APT_00872 PF00562 RNA polymerase Rpb2, domain 6 APT_00872 PF04563 RNA polymerase beta subunit APT_00872 PF10385 RNA polymerase beta subunit external 1 domain APT_00872 PF04560 RNA polymerase Rpb2, domain 7 APT_00872 PF04561 RNA polymerase Rpb2, domain 2 APT_00872 PF04565 RNA polymerase Rpb2, domain 3 APT_00873 PF04983 RNA polymerase Rpb1, domain 3 APT_00873 PF00623 RNA polymerase Rpb1, domain 2 APT_00873 PF04997 RNA polymerase Rpb1, domain 1 APT_00873 PF04998 RNA polymerase Rpb1, domain 5 APT_00873 PF05000 RNA polymerase Rpb1, domain 4 APT_00874 PF00164 Ribosomal protein S12/S23 APT_00875 PF00177 Ribosomal protein S7p/S5e APT_00876 PF03143 Elongation factor Tu C-terminal domain APT_00876 PF00009 Elongation factor Tu GTP binding domain APT_00876 PF03144 Elongation factor Tu domain 2 APT_00877 PF00338 Ribosomal protein S10p/S20e APT_00878 PF00297 Ribosomal protein L3 APT_00879 PF00573 Ribosomal protein L4/L1 family APT_00880 PF00276 Ribosomal protein L23 APT_00881 PF03947 Ribosomal Proteins L2, C-terminal domain APT_00881 PF00181 Ribosomal Proteins L2, RNA binding domain APT_00882 PF00203 Ribosomal protein S19 APT_00883 PF00237 Ribosomal protein L22p/L17e APT_00884 PF07650 KH domain APT_00884 PF00189 Ribosomal protein S3, C-terminal domain APT_00885 PF00252 Ribosomal protein L16p/L10e APT_00886 PF00831 Ribosomal L29 protein APT_00887 PF00366 Ribosomal protein S17 APT_00888 PF00238 Ribosomal protein L14p/L23e APT_00889 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APT_00890 PF00673 ribosomal L5P family C-terminus APT_00890 PF00281 Ribosomal protein L5 APT_00891 PF00253 Ribosomal protein S14p/S29e APT_00892 PF00410 Ribosomal protein S8 APT_00893 PF00347 Ribosomal protein L6 APT_00894 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APT_00895 PF00333 Ribosomal protein S5, N-terminal domain APT_00895 PF03719 Ribosomal protein S5, C-terminal domain APT_00896 PF00327 Ribosomal protein L30p/L7e APT_00897 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APT_00898 PF00344 SecY translocase APT_00899 PF05191 Adenylate kinase, active site lid APT_00900 PF00416 Ribosomal protein S13/S18 APT_00901 PF00411 Ribosomal protein S11 APT_00902 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APT_00902 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APT_00902 PF01000 RNA polymerase Rpb3/RpoA insert domain APT_00903 PF01196 Ribosomal protein L17 APT_00905 PF00528 Binding-protein-dependent transport system inner membrane component APT_00906 PF00005 ABC transporter APT_00908 PF07043 Protein of unknown function (DUF1328) APT_00909 PF02321 Outer membrane efflux protein APT_00910 PF00873 AcrB/AcrD/AcrF family APT_00911 PF00873 AcrB/AcrD/AcrF family APT_00912 PF13533 Biotin-lipoyl like APT_00913 PF07690 Major Facilitator Superfamily APT_00914 PF05532 CsbD-like APT_00915 PF01351 Ribonuclease HII APT_00916 PF18755 Restriction Enzyme Adenine Methylase Associated APT_00916 PF01555 DNA methylase APT_00921 PF17863 AAA lid domain APT_00921 PF07726 ATPase family associated with various cellular activities (AAA) APT_00923 PF12627 Probable RNA and SrmB- binding site of polymerase A APT_00923 PF01743 Poly A polymerase head domain APT_00923 PF13735 tRNA nucleotidyltransferase domain 2 putative APT_00924 PF00664 ABC transporter transmembrane region APT_00924 PF00005 ABC transporter APT_00925 PF13533 Biotin-lipoyl like APT_00926 PF07690 Major Facilitator Superfamily APT_00927 PF00293 NUDIX domain APT_00929 PF13180 PDZ domain APT_00929 PF03572 Peptidase family S41 APT_00931 PF01676 Metalloenzyme superfamily APT_00931 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APT_00932 PF00291 Pyridoxal-phosphate dependent enzyme APT_00932 PF13291 ACT domain APT_00933 PF03449 Transcription elongation factor, N-terminal APT_00933 PF01272 Transcription elongation factor, GreA/GreB, C-term APT_00934 PF02142 MGS-like domain APT_00934 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT_00934 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT_00935 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APT_00935 PF00117 Glutamine amidotransferase class-I APT_00937 PF10410 DnaB-helicase binding domain of primase APT_00937 PF08278 DNA primase DnaG DnaB-binding APT_00937 PF01807 CHC2 zinc finger APT_00937 PF08275 DNA primase catalytic core, N-terminal domain APT_00937 PF13662 Toprim domain APT_00938 PF04539 Sigma-70 region 3 APT_00938 PF04542 Sigma-70 region 2 APT_00938 PF03979 Sigma-70 factor, region 1.1 APT_00938 PF04546 Sigma-70, non-essential region APT_00938 PF04545 Sigma-70, region 4 APT_00938 PF00140 Sigma-70 factor, region 1.2 APT_00940 PF01250 Ribosomal protein S6 APT_00941 PF01084 Ribosomal protein S18 APT_00942 PF03948 Ribosomal protein L9, C-terminal domain APT_00942 PF01281 Ribosomal protein L9, N-terminal domain APT_00944 PF00398 Ribosomal RNA adenine dimethylase APT_00945 PF00639 PPIC-type PPIASE domain APT_00945 PF09312 SurA N-terminal domain APT_00946 PF04453 LPS transport system D APT_00950 PF00664 ABC transporter transmembrane region APT_00950 PF00005 ABC transporter APT_00951 PF00392 Bacterial regulatory proteins, gntR family APT_00951 PF07729 FCD domain APT_00952 PF03776 Septum formation topological specificity factor MinE APT_00953 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT_00954 PF05209 Septum formation inhibitor MinC, N-terminal domain APT_00954 PF03775 Septum formation inhibitor MinC, C-terminal domain APT_00955 PF13417 Glutathione S-transferase, N-terminal domain APT_00955 PF00043 Glutathione S-transferase, C-terminal domain APT_00957 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_00960 PF02559 CarD-like/TRCF domain APT_00961 PF01062 Bestrophin, RFP-TM, chloride channel APT_00962 PF00756 Putative esterase APT_00965 PF00005 ABC transporter APT_00968 PF00072 Response regulator receiver domain APT_00968 PF13188 PAS domain APT_00968 PF08448 PAS fold APT_00968 PF00512 His Kinase A (phospho-acceptor) domain APT_00968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_00969 PF00072 Response regulator receiver domain APT_00969 PF13188 PAS domain APT_00969 PF08448 PAS fold APT_00969 PF00512 His Kinase A (phospho-acceptor) domain APT_00969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_00970 PF00227 Proteasome subunit APT_00971 PF07724 AAA domain (Cdc48 subfamily) APT_00971 PF00004 ATPase family associated with various cellular activities (AAA) APT_00971 PF10431 C-terminal, D2-small domain, of ClpB protein APT_00972 PF02657 Fe-S metabolism associated domain APT_00973 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_00974 PF01799 [2Fe-2S] binding domain APT_00974 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_00975 PF00034 Cytochrome c APT_00975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_00975 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_00976 PF01232 Mannitol dehydrogenase Rossmann domain APT_00976 PF08125 Mannitol dehydrogenase C-terminal domain APT_00977 PF01632 Ribosomal protein L35 APT_00978 PF00453 Ribosomal protein L20 APT_00979 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APT_00979 PF01409 tRNA synthetases class II core domain (F) APT_00980 PF03483 B3/4 domain APT_00980 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APT_00980 PF01588 Putative tRNA binding domain APT_00980 PF03484 tRNA synthetase B5 domain APT_00980 PF03147 Ferredoxin-fold anticodon binding domain APT_00981 PF12849 PBP superfamily domain APT_00982 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT_00984 PF00999 Sodium/hydrogen exchanger family APT_00986 PF01479 S4 domain APT_00986 PF00163 Ribosomal protein S4/S9 N-terminal domain APT_00987 PF16658 Class II release factor RF3, C-terminal domain APT_00987 PF00009 Elongation factor Tu GTP binding domain APT_00987 PF03144 Elongation factor Tu domain 2 APT_00989 PF18324 Hypothetical protein TT1725 APT_00989 PF00180 Isocitrate/isopropylmalate dehydrogenase APT_00990 PF00557 Metallopeptidase family M24 APT_00990 PF01321 Creatinase/Prolidase N-terminal domain APT_00992 PF00580 UvrD/REP helicase N-terminal domain APT_00992 PF13361 UvrD-like helicase C-terminal domain APT_00993 PF04002 RadC-like JAB domain APT_00994 PF04002 RadC-like JAB domain APT_00995 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APT_00995 PF02222 ATP-grasp domain APT_00996 PF00731 AIR carboxylase APT_01000 PF00011 Hsp20/alpha crystallin family APT_01002 PF01197 Ribosomal protein L31 APT_01004 PF01741 Large-conductance mechanosensitive channel, MscL APT_01006 PF07549 SecD/SecF GG Motif APT_01006 PF02355 Protein export membrane protein APT_01007 PF07549 SecD/SecF GG Motif APT_01007 PF02355 Protein export membrane protein APT_01008 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT_01008 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT_01009 PF03477 ATP cone domain APT_01009 PF00317 Ribonucleotide reductase, all-alpha domain APT_01009 PF02867 Ribonucleotide reductase, barrel domain APT_01010 PF00268 Ribonucleotide reductase, small chain APT_01012 PF00348 Polyprenyl synthetase APT_01013 PF01177 Asp/Glu/Hydantoin racemase APT_01014 PF00156 Phosphoribosyl transferase domain APT_01016 PF00285 Citrate synthase, C-terminal domain APT_01018 PF02153 Prephenate dehydrogenase APT_01018 PF01817 Chorismate mutase type II APT_01020 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APT_01020 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APT_01022 PF02463 RecF/RecN/SMC N terminal domain APT_01023 PF13462 Thioredoxin APT_01024 PF00571 CBS domain APT_01024 PF03471 Transporter associated domain APT_01025 PF02130 Uncharacterized protein family UPF0054 APT_01026 PF02562 PhoH-like protein APT_01027 PF00919 Uncharacterized protein family UPF0004 APT_01027 PF04055 Radical SAM superfamily APT_01027 PF01938 TRAM domain APT_01029 PF17243 POTRA domain TamA domain 1 APT_01029 PF01103 Surface antigen APT_01029 PF07244 Surface antigen variable number repeat APT_01032 PF01244 Membrane dipeptidase (Peptidase family M19) APT_01033 PF01541 GIY-YIG catalytic domain APT_01033 PF12826 Helix-hairpin-helix motif APT_01033 PF02151 UvrB/uvrC motif APT_01033 PF08459 UvrC Helix-hairpin-helix N-terminal APT_01034 PF01066 CDP-alcohol phosphatidyltransferase APT_01036 PF02597 ThiS family APT_01037 PF02391 MoaE protein APT_01038 PF00202 Aminotransferase class-III APT_01039 PF00155 Aminotransferase class I and II APT_01041 PF13649 Methyltransferase domain APT_01042 PF00717 Peptidase S24-like APT_01042 PF01726 LexA DNA binding domain APT_01043 PF00994 Probable molybdopterin binding domain APT_01043 PF03454 MoeA C-terminal region (domain IV) APT_01043 PF03453 MoeA N-terminal region (domain I and II) APT_01044 PF00471 Ribosomal protein L33 APT_01046 PF00113 Enolase, C-terminal TIM barrel domain APT_01046 PF03952 Enolase, N-terminal domain APT_01048 PF01266 FAD dependent oxidoreductase APT_01050 PF05690 Thiazole biosynthesis protein ThiG APT_01051 PF02581 Thiamine monophosphate synthase APT_01052 PF00270 DEAD/DEAH box helicase APT_01052 PF00271 Helicase conserved C-terminal domain APT_01052 PF17191 RecG wedge domain APT_01053 PF03937 Flavinator of succinate dehydrogenase APT_01054 PF17757 UvrB interaction domain APT_01054 PF03461 TRCF domain APT_01054 PF00271 Helicase conserved C-terminal domain APT_01054 PF00270 DEAD/DEAH box helicase APT_01054 PF02559 CarD-like/TRCF domain APT_01056 PF13593 SBF-like CPA transporter family (DUF4137) APT_01057 PF00282 Pyridoxal-dependent decarboxylase conserved domain APT_01058 PF11775 Cobalamin biosynthesis protein CobT VWA domain APT_01058 PF06213 Cobalamin biosynthesis protein CobT APT_01059 PF08406 CbbQ/NirQ/NorQ C-terminal APT_01059 PF12556 Cobaltochelatase CobS subunit N terminal APT_01059 PF07728 AAA domain (dynein-related subfamily) APT_01060 PF01556 DnaJ C terminal domain APT_01060 PF00684 DnaJ central domain APT_01060 PF00226 DnaJ domain APT_01061 PF01722 BolA-like protein APT_01063 PF03099 Biotin/lipoate A/B protein ligase family APT_01064 PF00483 Nucleotidyl transferase APT_01065 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT_01065 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT_01065 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT_01065 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT_01066 PF04055 Radical SAM superfamily APT_01066 PF06463 Molybdenum Cofactor Synthesis C APT_01067 PF08241 Methyltransferase domain APT_01068 PF00156 Phosphoribosyl transferase domain APT_01069 PF00462 Glutaredoxin APT_01072 PF10282 Lactonase, 7-bladed beta-propeller APT_01074 PF00696 Amino acid kinase family APT_01074 PF01842 ACT domain APT_01074 PF13840 ACT domain APT_01075 PF03060 Nitronate monooxygenase APT_01077 PF04551 GcpE protein APT_01078 PF03129 Anticodon binding domain APT_01078 PF13393 Histidyl-tRNA synthetase APT_01079 PF00472 RF-1 domain APT_01079 PF03462 PCRF domain APT_01081 PF13847 Methyltransferase domain APT_01081 PF17827 PrmC N-terminal domain APT_01084 PF02673 Bacitracin resistance protein BacA APT_01085 PF13520 Amino acid permease APT_01088 PF13406 Transglycosylase SLT domain APT_01089 PF05036 Sporulation related domain APT_01089 PF03330 Lytic transglycolase APT_01090 PF07943 Penicillin-binding protein 5, C-terminal domain APT_01090 PF00768 D-alanyl-D-alanine carboxypeptidase APT_01091 PF02223 Thymidylate kinase APT_01093 PF09334 tRNA synthetases class I (M) APT_01093 PF08264 Anticodon-binding domain of tRNA APT_01094 PF01026 TatD related DNase APT_01097 PF01243 Pyridoxamine 5'-phosphate oxidase APT_01097 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APT_01099 PF01264 Chorismate synthase APT_01100 PF02566 OsmC-like protein APT_01101 PF06039 Malate:quinone oxidoreductase (Mqo) APT_01103 PF06508 Queuosine biosynthesis protein QueC APT_01105 PF06968 Biotin and Thiamin Synthesis associated domain APT_01105 PF04055 Radical SAM superfamily APT_01107 PF01507 Phosphoadenosine phosphosulfate reductase family APT_01108 PF01507 Phosphoadenosine phosphosulfate reductase family APT_01109 PF00009 Elongation factor Tu GTP binding domain APT_01111 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT_01111 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT_01113 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APT_01114 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APT_01116 PF00459 Inositol monophosphatase family APT_01118 PF02618 YceG-like family APT_01119 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_01119 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_01120 PF00550 Phosphopantetheine attachment site APT_01123 PF00698 Acyl transferase domain APT_01129 PF00313 'Cold-shock' DNA-binding domain APT_01130 PF01668 SmpB protein APT_01131 PF00701 Dihydrodipicolinate synthetase family APT_01132 PF01842 ACT domain APT_01132 PF01817 Chorismate mutase type II APT_01132 PF00800 Prephenate dehydratase APT_01133 PF02348 Cytidylyltransferase APT_01134 PF00034 Cytochrome c APT_01135 PF00459 Inositol monophosphatase family APT_01136 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT_01136 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT_01137 PF13335 Magnesium chelatase, subunit ChlI C-terminal APT_01137 PF01078 Magnesium chelatase, subunit ChlI APT_01138 PF01053 Cys/Met metabolism PLP-dependent enzyme APT_01139 PF00581 Rhodanese-like domain APT_01140 PF01594 AI-2E family transporter APT_01143 PF02021 Uncharacterised protein family UPF0102 APT_01145 PF00462 Glutaredoxin APT_01146 PF01722 BolA-like protein APT_01147 PF02769 AIR synthase related protein, C-terminal domain APT_01147 PF00586 AIR synthase related protein, N-terminal domain APT_01147 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APT_01150 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APT_01151 PF01259 SAICAR synthetase APT_01152 PF00206 Lyase APT_01152 PF10397 Adenylosuccinate lyase C-terminus APT_01153 PF03741 Integral membrane protein TerC family APT_01154 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APT_01154 PF01464 Transglycosylase SLT domain APT_01156 PF02464 Competence-damaged protein APT_01160 PF04055 Radical SAM superfamily APT_01161 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT_01161 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_01162 PF00364 Biotin-requiring enzyme APT_01162 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT_01162 PF02817 e3 binding domain APT_01163 PF02780 Transketolase, C-terminal domain APT_01163 PF00364 Biotin-requiring enzyme APT_01163 PF02779 Transketolase, pyrimidine binding domain APT_01164 PF00676 Dehydrogenase E1 component APT_01165 PF01967 MoaC family APT_01166 PF00218 Indole-3-glycerol phosphate synthase APT_01167 PF02885 Glycosyl transferase family, helical bundle domain APT_01167 PF00591 Glycosyl transferase family, a/b domain APT_01168 PF00117 Glutamine amidotransferase class-I APT_01169 PF00425 chorismate binding enzyme APT_01169 PF04715 Anthranilate synthase component I, N terminal region APT_01171 PF00121 Triosephosphate isomerase APT_01173 PF06418 CTP synthase N-terminus APT_01173 PF00117 Glutamine amidotransferase class-I APT_01174 PF00793 DAHP synthetase I family APT_01175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_01175 PF01751 Toprim domain APT_01175 PF00986 DNA gyrase B subunit, carboxyl terminus APT_01175 PF00204 DNA gyrase B APT_01176 PF02463 RecF/RecN/SMC N terminal domain APT_01177 PF02767 DNA polymerase III beta subunit, central domain APT_01177 PF02768 DNA polymerase III beta subunit, C-terminal domain APT_01177 PF00712 DNA polymerase III beta subunit, N-terminal domain APT_01178 PF11638 DnaA N-terminal domain APT_01178 PF00308 Bacterial dnaA protein APT_01178 PF08299 Bacterial dnaA protein helix-turn-helix APT_01180 PF01649 Ribosomal protein S20 APT_01181 PF06827 Zinc finger found in FPG and IleRS APT_01181 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT_01181 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT_01182 PF01209 ubiE/COQ5 methyltransferase family APT_01183 PF02441 Flavoprotein APT_01183 PF04127 DNA / pantothenate metabolism flavoprotein APT_01184 PF00692 dUTPase APT_01185 PF00528 Binding-protein-dependent transport system inner membrane component APT_01186 PF00005 ABC transporter APT_01187 PF01625 Peptide methionine sulfoxide reductase APT_01188 PF10458 Valyl tRNA synthetase tRNA binding arm APT_01188 PF00133 tRNA synthetases class I (I, L, M and V) APT_01188 PF08264 Anticodon-binding domain of tRNA APT_01190 PF02321 Outer membrane efflux protein APT_01192 PF13356 Arm DNA-binding domain APT_01192 PF00589 Phage integrase family APT_01207 PF02899 Phage integrase, N-terminal SAM-like domain APT_01207 PF00589 Phage integrase family APT_01227 PF00586 AIR synthase related protein, N-terminal domain APT_01227 PF02769 AIR synthase related protein, C-terminal domain APT_01228 PF01029 NusB family APT_01229 PF03477 ATP cone domain APT_01232 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT_01232 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT_01233 PF00230 Major intrinsic protein APT_01234 PF01266 FAD dependent oxidoreductase APT_01234 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APT_01235 PF08220 DeoR-like helix-turn-helix domain APT_01235 PF00455 DeoR C terminal sensor domain APT_01236 PF09382 RQC domain APT_01236 PF16124 RecQ zinc-binding APT_01236 PF00270 DEAD/DEAH box helicase APT_01236 PF00271 Helicase conserved C-terminal domain APT_01236 PF00570 HRDC domain APT_01238 PF00664 ABC transporter transmembrane region APT_01238 PF00005 ABC transporter APT_01239 PF00664 ABC transporter transmembrane region APT_01239 PF00005 ABC transporter APT_01240 PF07568 Histidine kinase APT_01240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_01240 PF12282 Signal transduction histidine kinase APT_01242 PF08281 Sigma-70, region 4 APT_01242 PF04542 Sigma-70 region 2 APT_01243 PF08281 Sigma-70, region 4 APT_01243 PF04542 Sigma-70 region 2 APT_01244 PF00072 Response regulator receiver domain APT_01246 PF01204 Trehalase APT_01247 PF08240 Alcohol dehydrogenase GroES-like domain APT_01247 PF00107 Zinc-binding dehydrogenase APT_01248 PF08274 PhnA Zinc-Ribbon APT_01248 PF03831 PhnA domain APT_01251 PF02567 Phenazine biosynthesis-like protein APT_01252 PF01979 Amidohydrolase family APT_01255 PF00005 ABC transporter APT_01258 PF01979 Amidohydrolase family APT_01260 PF07687 Peptidase dimerisation domain APT_01260 PF01546 Peptidase family M20/M25/M40 APT_01261 PF00266 Aminotransferase class-V APT_01264 PF01425 Amidase APT_01266 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_01266 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT_01267 PF01799 [2Fe-2S] binding domain APT_01267 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_01268 PF00860 Permease family APT_01269 PF00576 HIUase/Transthyretin family APT_01272 PF13454 FAD-NAD(P)-binding APT_01274 PF01979 Amidohydrolase family APT_01276 PF02472 Biopolymer transport protein ExbD/TolR APT_01277 PF02472 Biopolymer transport protein ExbD/TolR APT_01278 PF01618 MotA/TolQ/ExbB proton channel family APT_01281 PF13533 Biotin-lipoyl like APT_01282 PF00005 ABC transporter APT_01286 PF03601 Conserved hypothetical protein 698 APT_01288 PF13243 Squalene-hopene cyclase C-terminal domain APT_01288 PF13249 Squalene-hopene cyclase N-terminal domain APT_01289 PF17754 MftR C-terminal domain APT_01289 PF00440 Bacterial regulatory proteins, tetR family APT_01292 PF06965 Na+/H+ antiporter 1 APT_01293 PF00171 Aldehyde dehydrogenase family APT_01294 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT_01295 PF01638 HxlR-like helix-turn-helix APT_01296 PF06628 Catalase-related immune-responsive APT_01296 PF18011 C-terminal domain found in long catalases APT_01296 PF00199 Catalase APT_01297 PF00472 RF-1 domain APT_01299 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain APT_01299 PF10091 Putative glucoamylase APT_01299 PF06165 Glycosyltransferase family 36 APT_01300 PF01979 Amidohydrolase family APT_01300 PF13382 Adenine deaminase C-terminal domain APT_01301 PF00583 Acetyltransferase (GNAT) family APT_01302 PF08543 Phosphomethylpyrimidine kinase APT_01305 PF00593 TonB dependent receptor APT_01305 PF07715 TonB-dependent Receptor Plug Domain APT_01306 PF06472 ABC transporter transmembrane region 2 APT_01306 PF00005 ABC transporter APT_01309 PF00012 Hsp70 protein APT_01310 PF02321 Outer membrane efflux protein APT_01311 PF00873 AcrB/AcrD/AcrF family APT_01318 PF04909 Amidohydrolase APT_01322 PF04073 Aminoacyl-tRNA editing domain APT_01323 PF07690 Major Facilitator Superfamily APT_01326 PF02472 Biopolymer transport protein ExbD/TolR APT_01327 PF01618 MotA/TolQ/ExbB proton channel family APT_01330 PF07715 TonB-dependent Receptor Plug Domain APT_01330 PF00593 TonB dependent receptor APT_01332 PF08281 Sigma-70, region 4 APT_01332 PF12680 SnoaL-like domain APT_01332 PF04542 Sigma-70 region 2 APT_01333 PF00593 TonB dependent receptor APT_01333 PF07715 TonB-dependent Receptor Plug Domain APT_01335 PF04539 Sigma-70 region 3 APT_01335 PF04542 Sigma-70 region 2 APT_01335 PF04545 Sigma-70, region 4 APT_01336 PF09084 NMT1/THI5 like APT_01337 PF00005 ABC transporter APT_01338 PF00528 Binding-protein-dependent transport system inner membrane component APT_01340 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT_01342 PF07690 Major Facilitator Superfamily APT_01344 PF07690 Major Facilitator Superfamily APT_01345 PF03466 LysR substrate binding domain APT_01345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_01346 PF00920 Dehydratase family APT_01347 PF03328 HpcH/HpaI aldolase/citrate lyase family APT_01348 PF01979 Amidohydrolase family APT_01348 PF13382 Adenine deaminase C-terminal domain APT_01349 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_01350 PF00465 Iron-containing alcohol dehydrogenase APT_01351 PF00083 Sugar (and other) transporter APT_01352 PF00171 Aldehyde dehydrogenase family APT_01354 PF00528 Binding-protein-dependent transport system inner membrane component APT_01355 PF00005 ABC transporter APT_01356 PF08753 NikR C terminal nickel binding domain APT_01356 PF01402 Ribbon-helix-helix protein, copG family APT_01358 PF09347 Domain of unknown function (DUF1989) APT_01359 PF00364 Biotin-requiring enzyme APT_01359 PF00289 Biotin carboxylase, N-terminal domain APT_01359 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT_01359 PF02785 Biotin carboxylase C-terminal domain APT_01360 PF01425 Amidase APT_01361 PF07859 alpha/beta hydrolase fold APT_01362 PF13086 AAA domain APT_01362 PF13087 AAA domain APT_01362 PF13195 Protein of unknown function (DUF4011) APT_01362 PF13086 AAA domain APT_01362 PF13195 Protein of unknown function (DUF4011) APT_01362 PF13087 AAA domain APT_01364 PF00593 TonB dependent receptor APT_01364 PF07715 TonB-dependent Receptor Plug Domain APT_01365 PF01126 Heme oxygenase APT_01367 PF00005 ABC transporter APT_01368 PF01032 FecCD transport family APT_01369 PF01497 Periplasmic binding protein APT_01371 PF01325 Iron dependent repressor, N-terminal DNA binding domain APT_01371 PF02742 Iron dependent repressor, metal binding and dimerisation domain APT_01372 PF01566 Natural resistance-associated macrophage protein APT_01377 PF00561 alpha/beta hydrolase fold APT_01378 PF00909 Ammonium Transporter Family APT_01380 PF01179 Copper amine oxidase, enzyme domain APT_01380 PF02728 Copper amine oxidase, N3 domain APT_01380 PF02727 Copper amine oxidase, N2 domain APT_01383 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_01383 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT_01384 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT_01385 PF00106 short chain dehydrogenase APT_01386 PF02311 AraC-like ligand binding domain APT_01386 PF12833 Helix-turn-helix domain APT_01387 PF00149 Calcineurin-like phosphoesterase APT_01387 PF10518 TAT (twin-arginine translocation) pathway signal sequence APT_01389 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_01389 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT_01390 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_01390 PF01799 [2Fe-2S] binding domain APT_01393 PF03412 Peptidase C39 family APT_01393 PF00664 ABC transporter transmembrane region APT_01393 PF00005 ABC transporter APT_01397 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_01399 PF00296 Luciferase-like monooxygenase APT_01400 PF00296 Luciferase-like monooxygenase APT_01403 PF01613 Flavin reductase like domain APT_01406 PF00296 Luciferase-like monooxygenase APT_01407 PF00296 Luciferase-like monooxygenase APT_01410 PF00881 Nitroreductase family APT_01412 PF07715 TonB-dependent Receptor Plug Domain APT_01412 PF00593 TonB dependent receptor APT_01414 PF02384 N-6 DNA Methylase APT_01414 PF12161 HsdM N-terminal domain APT_01415 PF01420 Type I restriction modification DNA specificity domain APT_01416 PF11867 Domain of unknown function (DUF3387) APT_01416 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APT_01416 PF18766 SWI2/SNF2 ATPase APT_01419 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT_01420 PF16197 Ketoacyl-synthetase C-terminal extension APT_01420 PF00202 Aminotransferase class-III APT_01420 PF00501 AMP-binding enzyme APT_01420 PF00550 Phosphopantetheine attachment site APT_01420 PF13193 AMP-binding enzyme C-terminal domain APT_01420 PF00668 Condensation domain APT_01420 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_01420 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_01421 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_01421 PF08659 KR domain APT_01421 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_01421 PF16197 Ketoacyl-synthetase C-terminal extension APT_01421 PF08240 Alcohol dehydrogenase GroES-like domain APT_01421 PF00698 Acyl transferase domain APT_01421 PF14765 Polyketide synthase dehydratase APT_01421 PF00550 Phosphopantetheine attachment site APT_01422 PF13193 AMP-binding enzyme C-terminal domain APT_01422 PF00501 AMP-binding enzyme APT_01425 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_01429 PF03793 PASTA domain APT_01429 PF00069 Protein kinase domain APT_01432 PF02384 N-6 DNA Methylase APT_01432 PF12161 HsdM N-terminal domain APT_01435 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_01438 PF01464 Transglycosylase SLT domain APT_01442 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_01445 PF17755 UvrA DNA-binding domain APT_01446 PF00375 Sodium:dicarboxylate symporter family APT_01447 PF05724 Thiopurine S-methyltransferase (TPMT) APT_01448 PF04399 Glutaredoxin 2, C terminal domain APT_01448 PF13417 Glutathione S-transferase, N-terminal domain APT_01449 PF07690 Major Facilitator Superfamily APT_01451 PF01888 CbiD APT_01452 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_01454 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_01455 PF02571 Precorrin-6x reductase CbiJ/CobK APT_01456 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_01457 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_01458 PF02570 Precorrin-8X methylmutase APT_01459 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT_01461 PF10415 Fumarase C C-terminus APT_01461 PF00206 Lyase APT_01463 PF06505 Activator of aromatic catabolism APT_01463 PF02830 V4R domain APT_01463 PF00158 Sigma-54 interaction domain APT_01463 PF02954 Bacterial regulatory protein, Fis family APT_01465 PF01011 PQQ enzyme repeat APT_01473 PF01594 AI-2E family transporter APT_01475 PF00871 Acetokinase family APT_01476 PF01515 Phosphate acetyl/butaryl transferase APT_01477 PF01070 FMN-dependent dehydrogenase APT_01478 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APT_01478 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APT_01478 PF10371 Domain of unknown function APT_01478 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_01478 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APT_01479 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_01479 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT_01482 PF02659 Putative manganese efflux pump APT_01483 PF02798 Glutathione S-transferase, N-terminal domain APT_01483 PF14497 Glutathione S-transferase, C-terminal domain APT_01484 PF02634 FdhD/NarQ family APT_01485 PF12804 MobA-like NTP transferase domain APT_01486 PF03205 Molybdopterin guanine dinucleotide synthesis protein B APT_01487 PF03453 MoeA N-terminal region (domain I and II) APT_01487 PF03454 MoeA C-terminal region (domain IV) APT_01487 PF00994 Probable molybdopterin binding domain APT_01488 PF04216 Protein involved in formate dehydrogenase formation APT_01489 PF01292 Prokaryotic cytochrome b561 APT_01490 PF09163 Formate dehydrogenase N, transmembrane APT_01490 PF13247 4Fe-4S dicluster domain APT_01491 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT_01491 PF00384 Molybdopterin oxidoreductase APT_01491 PF01568 Molydopterin dinucleotide binding domain APT_01492 PF02541 Ppx/GppA phosphatase family APT_01493 PF01728 FtsJ-like methyltransferase APT_01494 PF00480 ROK family APT_01495 PF01206 Sulfurtransferase TusA APT_01496 PF02609 Exonuclease VII small subunit APT_01497 PF00348 Polyprenyl synthetase APT_01498 PF02780 Transketolase, C-terminal domain APT_01498 PF02779 Transketolase, pyrimidine binding domain APT_01498 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APT_01499 PF01479 S4 domain APT_01499 PF01728 FtsJ-like methyltransferase APT_01501 PF04055 Radical SAM superfamily APT_01502 PF00764 Arginosuccinate synthase APT_01503 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APT_01503 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT_01505 PF00579 tRNA synthetases class I (W and Y) APT_01507 PF00072 Response regulator receiver domain APT_01507 PF00486 Transcriptional regulatory protein, C terminal APT_01510 PF01189 16S rRNA methyltransferase RsmB/F APT_01510 PF01029 NusB family APT_01511 PF00478 IMP dehydrogenase / GMP reductase domain APT_01511 PF00571 CBS domain APT_01512 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT_01514 PF00528 Binding-protein-dependent transport system inner membrane component APT_01515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT_01515 PF00005 ABC transporter APT_01516 PF00005 ABC transporter APT_01516 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT_01517 PF03060 Nitronate monooxygenase APT_01518 PF01569 PAP2 superfamily APT_01521 PF05506 Domain of unknown function (DUF756) APT_01521 PF04185 Phosphoesterase family APT_01526 PF07690 Major Facilitator Superfamily APT_01530 PF03551 Transcriptional regulator PadR-like family APT_01533 PF00529 HlyD membrane-fusion protein of T1SS APT_01533 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT_01534 PF04632 Fusaric acid resistance protein family APT_01536 PF04055 Radical SAM superfamily APT_01536 PF13282 Domain of unknown function (DUF4070) APT_01536 PF02310 B12 binding domain APT_01538 PF07715 TonB-dependent Receptor Plug Domain APT_01538 PF00593 TonB dependent receptor APT_01539 PF00924 Mechanosensitive ion channel APT_01539 PF05552 Conserved TM helix APT_01540 PF07995 Glucose / Sorbosone dehydrogenase APT_01543 PF02322 Cytochrome bd terminal oxidase subunit II APT_01544 PF01654 Cytochrome bd terminal oxidase subunit I APT_01545 PF00005 ABC transporter APT_01545 PF00664 ABC transporter transmembrane region APT_01546 PF00005 ABC transporter APT_01546 PF00664 ABC transporter transmembrane region APT_01548 PF13640 2OG-Fe(II) oxygenase superfamily APT_01548 PF18331 PKHD-type hydroxylase C-terminal domain APT_01549 PF07715 TonB-dependent Receptor Plug Domain APT_01549 PF00593 TonB dependent receptor APT_01553 PF17763 Glutaminase/Asparaginase C-terminal domain APT_01553 PF00710 Asparaginase, N-terminal APT_01554 PF00155 Aminotransferase class I and II APT_01555 PF02080 TrkA-C domain APT_01555 PF06826 Predicted Permease Membrane Region APT_01562 PF00005 ABC transporter APT_01562 PF12848 ABC transporter APT_01563 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_01563 PF03466 LysR substrate binding domain APT_01565 PF00593 TonB dependent receptor APT_01565 PF07715 TonB-dependent Receptor Plug Domain APT_01566 PF00107 Zinc-binding dehydrogenase APT_01566 PF08240 Alcohol dehydrogenase GroES-like domain APT_01568 PF05974 Domain of unknown function (DUF892) APT_01570 PF02308 MgtC family APT_01573 PF02515 CoA-transferase family III APT_01574 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_01574 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_01574 PF00205 Thiamine pyrophosphate enzyme, central domain APT_01575 PF02515 CoA-transferase family III APT_01582 PF07690 Major Facilitator Superfamily APT_01583 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT_01583 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT_01583 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT_01583 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT_01584 PF12464 Maltose acetyltransferase APT_01584 PF14602 Hexapeptide repeat of succinyl-transferase APT_01589 PF07660 Secretin and TonB N terminus short domain APT_01589 PF07715 TonB-dependent Receptor Plug Domain APT_01589 PF00593 TonB dependent receptor APT_01591 PF03929 PepSY-associated TM region APT_01593 PF00593 TonB dependent receptor APT_01593 PF07715 TonB-dependent Receptor Plug Domain APT_01599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_01599 PF00512 His Kinase A (phospho-acceptor) domain APT_01599 PF08521 Two-component sensor kinase N-terminal APT_01600 PF00072 Response regulator receiver domain APT_01600 PF00486 Transcriptional regulatory protein, C terminal APT_01601 PF00873 AcrB/AcrD/AcrF family APT_01606 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_01622 PF01850 PIN domain APT_01623 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APT_01626 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_01627 PF00271 Helicase conserved C-terminal domain APT_01638 PF09278 MerR, DNA binding APT_01638 PF00376 MerR family regulatory protein APT_01641 PF01527 Transposase APT_01642 PF13333 Integrase core domain APT_01642 PF00665 Integrase core domain APT_01642 PF13276 HTH-like domain APT_01643 PF00899 ThiF family APT_01647 PF13276 HTH-like domain APT_01647 PF00665 Integrase core domain APT_01647 PF13333 Integrase core domain APT_01648 PF01527 Transposase APT_01655 PF12833 Helix-turn-helix domain APT_01655 PF01965 DJ-1/PfpI family APT_01656 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APT_01656 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APT_01659 PF07690 Major Facilitator Superfamily APT_01665 PF01527 Transposase APT_01666 PF13333 Integrase core domain APT_01666 PF00665 Integrase core domain APT_01666 PF13276 HTH-like domain APT_01671 PF01527 Transposase APT_01672 PF13936 Helix-turn-helix domain APT_01672 PF00665 Integrase core domain APT_01684 PF13742 OB-fold nucleic acid binding domain APT_01684 PF02601 Exonuclease VII, large subunit APT_01689 PF12833 Helix-turn-helix domain APT_01689 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term APT_01692 PF01757 Acyltransferase family APT_01703 PF00501 AMP-binding enzyme APT_01705 PF00155 Aminotransferase class I and II APT_01708 PF00149 Calcineurin-like phosphoesterase APT_01713 PF13419 Haloacid dehalogenase-like hydrolase APT_01714 PF00132 Bacterial transferase hexapeptide (six repeats) APT_01714 PF14602 Hexapeptide repeat of succinyl-transferase APT_01714 PF12804 MobA-like NTP transferase domain APT_01715 PF01380 SIS domain APT_01718 PF00255 Glutathione peroxidase APT_01719 PF00005 ABC transporter APT_01720 PF12704 MacB-like periplasmic core domain APT_01720 PF02687 FtsX-like permease family APT_01721 PF03129 Anticodon binding domain APT_01721 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT_01722 PF17770 Ribonuclease J C-terminal domain APT_01722 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APT_01722 PF12706 Beta-lactamase superfamily domain APT_01723 PF03309 Type III pantothenate kinase APT_01724 PF03099 Biotin/lipoate A/B protein ligase family APT_01724 PF02237 Biotin protein ligase C terminal domain APT_01725 PF00361 Proton-conducting membrane transporter APT_01726 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT_01726 PF00361 Proton-conducting membrane transporter APT_01727 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT_01728 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APT_01729 PF12838 4Fe-4S dicluster domain APT_01730 PF00146 NADH dehydrogenase APT_01731 PF00384 Molybdopterin oxidoreductase APT_01731 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APT_01731 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APT_01732 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APT_01732 PF10531 SLBB domain APT_01732 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APT_01734 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT_01735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APT_01736 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT_01737 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APT_01738 PF00216 Bacterial DNA-binding protein APT_01739 PF00004 ATPase family associated with various cellular activities (AAA) APT_01739 PF05362 Lon protease (S16) C-terminal proteolytic domain APT_01739 PF02190 ATP-dependent protease La (LON) substrate-binding domain APT_01740 PF10431 C-terminal, D2-small domain, of ClpB protein APT_01740 PF07724 AAA domain (Cdc48 subfamily) APT_01740 PF06689 ClpX C4-type zinc finger APT_01741 PF00574 Clp protease APT_01742 PF05697 Bacterial trigger factor protein (TF) APT_01742 PF05698 Bacterial trigger factor protein (TF) C-terminus APT_01742 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT_01743 PF01256 Carbohydrate kinase APT_01743 PF03853 YjeF-related protein N-terminus APT_01745 PF00271 Helicase conserved C-terminal domain APT_01745 PF00270 DEAD/DEAH box helicase APT_01746 PF05958 tRNA (Uracil-5-)-methyltransferase APT_01747 PF01521 Iron-sulphur cluster biosynthesis APT_01748 PF01883 Iron-sulfur cluster assembly protein APT_01750 PF00266 Aminotransferase class-V APT_01751 PF01458 Uncharacterized protein family (UPF0051) APT_01752 PF00005 ABC transporter APT_01753 PF01458 Uncharacterized protein family (UPF0051) APT_01754 PF02082 Transcriptional regulator APT_01755 PF04286 Protein of unknown function (DUF445) APT_01756 PF00311 Phosphoenolpyruvate carboxylase APT_01758 PF03144 Elongation factor Tu domain 2 APT_01758 PF03764 Elongation factor G, domain IV APT_01758 PF14492 Elongation Factor G, domain II APT_01758 PF00679 Elongation factor G C-terminus APT_01758 PF00009 Elongation factor Tu GTP binding domain APT_01759 PF00830 Ribosomal L28 family APT_01761 PF00664 ABC transporter transmembrane region APT_01761 PF00005 ABC transporter APT_01763 PF08335 GlnD PII-uridylyltransferase APT_01763 PF01966 HD domain APT_01764 PF01624 MutS domain I APT_01764 PF05188 MutS domain II APT_01764 PF05192 MutS domain III APT_01764 PF00488 MutS domain V APT_01764 PF05190 MutS family domain IV APT_01766 PF02074 Carboxypeptidase Taq (M32) metallopeptidase APT_01768 PF00291 Pyridoxal-phosphate dependent enzyme APT_01768 PF14821 Threonine synthase N terminus APT_01769 PF00675 Insulinase (Peptidase family M16) APT_01769 PF05193 Peptidase M16 inactive domain APT_01770 PF01523 Putative modulator of DNA gyrase APT_01774 PF01040 UbiA prenyltransferase family APT_01775 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT_01777 PF01209 ubiE/COQ5 methyltransferase family APT_01779 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APT_01779 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APT_01782 PF01037 Lrp/AsnC ligand binding domain APT_01783 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_01784 PF03466 LysR substrate binding domain APT_01784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_01785 PF05443 ROS/MUCR transcriptional regulator protein APT_01786 PF00216 Bacterial DNA-binding protein APT_01788 PF03023 Lipid II flippase MurJ APT_01790 PF13411 MerR HTH family regulatory protein APT_01791 PF00216 Bacterial DNA-binding protein APT_01792 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT_01792 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT_01793 PF02504 Fatty acid synthesis protein APT_01794 PF01783 Ribosomal L32p protein family APT_01797 PF00672 HAMP domain APT_01797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_01797 PF00512 His Kinase A (phospho-acceptor) domain APT_01798 PF00072 Response regulator receiver domain APT_01798 PF00486 Transcriptional regulatory protein, C terminal APT_01799 PF12802 MarR family APT_01801 PF01327 Polypeptide deformylase APT_01802 PF01165 Ribosomal protein S21 APT_01803 PF00180 Isocitrate/isopropylmalate dehydrogenase APT_01804 PF00694 Aconitase C-terminal domain APT_01805 PF00330 Aconitase family (aconitate hydratase) APT_01806 PF01245 Ribosomal protein L19 APT_01807 PF01746 tRNA (Guanine-1)-methyltransferase APT_01808 PF01782 RimM N-terminal domain APT_01809 PF00886 Ribosomal protein S16 APT_01810 PF02881 SRP54-type protein, helical bundle domain APT_01810 PF02978 Signal peptide binding domain APT_01810 PF00448 SRP54-type protein, GTPase domain APT_01814 PF00849 RNA pseudouridylate synthase APT_01814 PF01479 S4 domain APT_01815 PF16193 AAA C-terminal domain APT_01815 PF00004 ATPase family associated with various cellular activities (AAA) APT_01815 PF12002 MgsA AAA+ ATPase C terminal APT_01817 PF01040 UbiA prenyltransferase family APT_01818 PF04452 RNA methyltransferase APT_01819 PF04107 Glutamate-cysteine ligase family 2(GCS2) APT_01820 PF07690 Major Facilitator Superfamily APT_01822 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT_01822 PF01926 50S ribosome-binding GTPase APT_01823 PF13360 PQQ-like domain APT_01827 PF13439 Glycosyltransferase Family 4 APT_01827 PF00534 Glycosyl transferases group 1 APT_01828 PF13537 Glutamine amidotransferase domain APT_01828 PF00733 Asparagine synthase APT_01829 PF01571 Aminomethyltransferase folate-binding domain APT_01830 PF01502 Phosphoribosyl-AMP cyclohydrolase APT_01831 PF02684 Lipid-A-disaccharide synthetase APT_01832 PF01740 STAS domain APT_01832 PF00916 Sulfate permease family APT_01833 PF01794 Ferric reductase like transmembrane component APT_01836 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT_01836 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT_01837 PF10431 C-terminal, D2-small domain, of ClpB protein APT_01837 PF02861 Clp amino terminal domain, pathogenicity island component APT_01837 PF07724 AAA domain (Cdc48 subfamily) APT_01837 PF17871 AAA lid domain APT_01837 PF00004 ATPase family associated with various cellular activities (AAA) APT_01838 PF00293 NUDIX domain APT_01839 PF16360 GTP-binding GTPase Middle Region APT_01839 PF13167 GTP-binding GTPase N-terminal APT_01839 PF01926 50S ribosome-binding GTPase APT_01840 PF17209 Hfq protein APT_01841 PF00158 Sigma-54 interaction domain APT_01841 PF00072 Response regulator receiver domain APT_01841 PF02954 Bacterial regulatory protein, Fis family APT_01842 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_01842 PF00672 HAMP domain APT_01843 PF02954 Bacterial regulatory protein, Fis family APT_01843 PF00158 Sigma-54 interaction domain APT_01843 PF00072 Response regulator receiver domain APT_01844 PF00989 PAS fold APT_01844 PF00512 His Kinase A (phospho-acceptor) domain APT_01844 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_01845 PF01207 Dihydrouridine synthase (Dus) APT_01846 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APT_01846 PF02542 YgbB family APT_01847 PF00535 Glycosyl transferase family 2 APT_01851 PF03275 UDP-galactopyranose mutase APT_01853 PF16363 GDP-mannose 4,6 dehydratase APT_01855 PF00156 Phosphoribosyl transferase domain APT_01860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT_01860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT_01860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT_01862 PF00543 Nitrogen regulatory protein P-II APT_01863 PF06426 Serine acetyltransferase, N-terminal APT_01863 PF00132 Bacterial transferase hexapeptide (six repeats) APT_01864 PF01494 FAD binding domain APT_01865 PF09335 SNARE associated Golgi protein APT_01872 PF01548 Transposase APT_01872 PF02371 Transposase IS116/IS110/IS902 family APT_01873 PF09285 Elongation factor P, C-terminal APT_01873 PF08207 Elongation factor P (EF-P) KOW-like domain APT_01873 PF01132 Elongation factor P (EF-P) OB domain APT_01874 PF00459 Inositol monophosphatase family APT_01875 PF13307 Helicase C-terminal domain APT_01875 PF04851 Type III restriction enzyme, res subunit APT_01876 PF00313 'Cold-shock' DNA-binding domain APT_01877 PF01738 Dienelactone hydrolase family APT_01878 PF00166 Chaperonin 10 Kd subunit APT_01879 PF00118 TCP-1/cpn60 chaperonin family APT_01891 PF00909 Ammonium Transporter Family APT_01894 PF00561 alpha/beta hydrolase fold APT_01895 PF02899 Phage integrase, N-terminal SAM-like domain APT_01895 PF00589 Phage integrase family APT_01896 PF00270 DEAD/DEAH box helicase APT_01896 PF17764 3′ DNA-binding domain (3′BD) APT_01896 PF18074 Primosomal protein N C-terminal domain APT_01896 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APT_01897 PF02699 Preprotein translocase subunit APT_01899 PF00355 Rieske [2Fe-2S] domain APT_01900 PF00293 NUDIX domain APT_01901 PF00483 Nucleotidyl transferase APT_01901 PF01050 Mannose-6-phosphate isomerase APT_01902 PF01053 Cys/Met metabolism PLP-dependent enzyme APT_01903 PF04379 ApaG domain APT_01904 PF01227 GTP cyclohydrolase I APT_01906 PF00994 Probable molybdopterin binding domain APT_01913 PF13533 Biotin-lipoyl like APT_01919 PF00885 6,7-dimethyl-8-ribityllumazine synthase APT_01920 PF00925 GTP cyclohydrolase II APT_01920 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APT_01921 PF00677 Lumazine binding domain APT_01922 PF01872 RibD C-terminal domain APT_01922 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT_01924 PF00032 Cytochrome b(C-terminal)/b6/petD APT_01924 PF02167 Cytochrome C1 family APT_01924 PF00033 Cytochrome b/b6/petB APT_01925 PF02167 Cytochrome C1 family APT_01925 PF00033 Cytochrome b/b6/petB APT_01925 PF00032 Cytochrome b(C-terminal)/b6/petD APT_01926 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APT_01926 PF00355 Rieske [2Fe-2S] domain APT_01927 PF03358 NADPH-dependent FMN reductase APT_01930 PF00860 Permease family APT_01933 PF07859 alpha/beta hydrolase fold APT_01935 PF00829 Ribosomal prokaryotic L21 protein APT_01936 PF01016 Ribosomal L27 protein APT_01937 PF01926 50S ribosome-binding GTPase APT_01937 PF01018 GTP1/OBG APT_01938 PF00696 Amino acid kinase family APT_01938 PF01472 PUA domain APT_01940 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) APT_01941 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APT_01941 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APT_01943 PF07859 alpha/beta hydrolase fold APT_01945 PF02381 MraZ protein, putative antitoxin-like APT_01946 PF01795 MraW methylase family APT_01948 PF03717 Penicillin-binding Protein dimerisation domain APT_01948 PF00905 Penicillin binding protein transpeptidase domain APT_01949 PF01225 Mur ligase family, catalytic domain APT_01949 PF02875 Mur ligase family, glutamate ligase domain APT_01949 PF08245 Mur ligase middle domain APT_01950 PF08245 Mur ligase middle domain APT_01950 PF02875 Mur ligase family, glutamate ligase domain APT_01950 PF01225 Mur ligase family, catalytic domain APT_01951 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APT_01951 PF00953 Glycosyl transferase family 4 APT_01952 PF02875 Mur ligase family, glutamate ligase domain APT_01952 PF08245 Mur ligase middle domain APT_01953 PF01098 Cell cycle protein APT_01954 PF04101 Glycosyltransferase family 28 C-terminal domain APT_01954 PF03033 Glycosyltransferase family 28 N-terminal domain APT_01955 PF08245 Mur ligase middle domain APT_01955 PF01225 Mur ligase family, catalytic domain APT_01955 PF02875 Mur ligase family, glutamate ligase domain APT_01956 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APT_01956 PF01565 FAD binding domain APT_01957 PF07478 D-ala D-ala ligase C-terminus APT_01957 PF01820 D-ala D-ala ligase N-terminus APT_01958 PF08478 POTRA domain, FtsQ-type APT_01958 PF03799 Cell division protein FtsQ APT_01959 PF02491 SHS2 domain inserted in FTSA APT_01960 PF00091 Tubulin/FtsZ family, GTPase domain APT_01960 PF12327 FtsZ family, C-terminal domain APT_01961 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APT_01962 PF13525 Outer membrane lipoprotein APT_01963 PF02463 RecF/RecN/SMC N terminal domain APT_01964 PF00533 BRCA1 C Terminus (BRCT) domain APT_01964 PF01653 NAD-dependent DNA ligase adenylation domain APT_01964 PF03120 NAD-dependent DNA ligase OB-fold domain APT_01964 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APT_01964 PF12826 Helix-hairpin-helix motif APT_01965 PF00391 PEP-utilising enzyme, mobile domain APT_01965 PF02896 PEP-utilising enzyme, TIM barrel domain APT_01965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT_01966 PF03618 Kinase/pyrophosphorylase APT_01968 PF01205 Uncharacterized protein family UPF0029 APT_01970 PF01474 Class-II DAHP synthetase family APT_01973 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT_01974 PF00857 Isochorismatase family APT_01976 PF00403 Heavy-metal-associated domain APT_01978 PF07732 Multicopper oxidase APT_01978 PF07731 Multicopper oxidase APT_01978 PF00394 Multicopper oxidase APT_01979 PF05275 Copper resistance protein B precursor (CopB) APT_01980 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APT_01980 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APT_01981 PF10369 Small subunit of acetolactate synthase APT_01982 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_01982 PF00205 Thiamine pyrophosphate enzyme, central domain APT_01982 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_01987 PF00271 Helicase conserved C-terminal domain APT_01987 PF00270 DEAD/DEAH box helicase APT_01991 PF00464 Serine hydroxymethyltransferase APT_01993 PF13520 Amino acid permease APT_01994 PF00490 Delta-aminolevulinic acid dehydratase APT_01995 PF04376 Arginine-tRNA-protein transferase, N terminus APT_01995 PF04377 Arginine-tRNA-protein transferase, C terminus APT_01996 PF00521 DNA gyrase/topoisomerase IV, subunit A APT_01996 PF03989 DNA gyrase C-terminal domain, beta-propeller APT_01997 PF02565 Recombination protein O C terminal APT_01997 PF11967 Recombination protein O N terminal APT_01998 PF00889 Elongation factor TS APT_01999 PF00318 Ribosomal protein S2 APT_02000 PF00355 Rieske [2Fe-2S] domain APT_02002 PF01063 Amino-transferase class IV APT_02003 PF04715 Anthranilate synthase component I, N terminal region APT_02003 PF00425 chorismate binding enzyme APT_02004 PF14579 Helix-hairpin-helix motif APT_02004 PF02811 PHP domain APT_02004 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT_02004 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT_02005 PF02569 Pantoate-beta-alanine ligase APT_02006 PF01042 Endoribonuclease L-PSP APT_02010 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT_02015 PF02310 B12 binding domain APT_02015 PF04055 Radical SAM superfamily APT_02016 PF00334 Nucleoside diphosphate kinase APT_02017 PF00005 ABC transporter APT_02017 PF12848 ABC transporter APT_02019 PF00072 Response regulator receiver domain APT_02019 PF00486 Transcriptional regulatory protein, C terminal APT_02020 PF00672 HAMP domain APT_02020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_02020 PF00512 His Kinase A (phospho-acceptor) domain APT_02022 PF00707 Translation initiation factor IF-3, C-terminal domain APT_02022 PF05198 Translation initiation factor IF-3, N-terminal domain APT_02023 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT_02023 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT_02023 PF03129 Anticodon binding domain APT_02023 PF02824 TGS domain APT_02027 PF01513 ATP-NAD kinase APT_02030 PF00075 RNase H APT_02031 PF01636 Phosphotransferase enzyme family APT_02032 PF02401 LytB protein APT_02035 PF03109 ABC1 family APT_02037 PF04898 Glutamate synthase central domain APT_02037 PF01645 Conserved region in glutamate synthase APT_02037 PF01493 GXGXG motif APT_02037 PF00310 Glutamine amidotransferases class-II APT_02038 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT_02038 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_02041 PF01520 N-acetylmuramoyl-L-alanine amidase APT_02042 PF12111 Polyribonucleotide phosphorylase C terminal APT_02042 PF10150 Ribonuclease E/G family APT_02042 PF00575 S1 RNA binding domain APT_02043 PF01634 ATP phosphoribosyltransferase APT_02044 PF00815 Histidinol dehydrogenase APT_02045 PF01176 Translation initiation factor 1A / IF-1 APT_02046 PF02545 Maf-like protein APT_02048 PF03884 DNA gyrase inhibitor YacG APT_02074 PF00589 Phage integrase family APT_02074 PF02899 Phage integrase, N-terminal SAM-like domain APT_02092 PF01381 Helix-turn-helix APT_02094 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) APT_02097 PF00589 Phage integrase family APT_02101 PF00171 Aldehyde dehydrogenase family APT_02102 PF01565 FAD binding domain APT_02102 PF09330 D-lactate dehydrogenase, membrane binding APT_02103 PF15887 Putative zinc-binding metallo-peptidase APT_02103 PF10005 zinc-ribbon domain APT_02105 PF14403 Circularly permuted ATP-grasp type 2 APT_02107 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APT_02107 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APT_02108 PF02445 Quinolinate synthetase A protein APT_02110 PF00440 Bacterial regulatory proteins, tetR family APT_02110 PF16925 Tetracyclin repressor-like, C-terminal domain APT_02111 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_02112 PF00171 Aldehyde dehydrogenase family APT_02114 PF07690 Major Facilitator Superfamily APT_02116 PF03358 NADPH-dependent FMN reductase APT_02117 PF02678 Pirin APT_02117 PF05726 Pirin C-terminal cupin domain APT_02118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_02118 PF03466 LysR substrate binding domain APT_02120 PF02472 Biopolymer transport protein ExbD/TolR APT_02121 PF02472 Biopolymer transport protein ExbD/TolR APT_02122 PF01618 MotA/TolQ/ExbB proton channel family APT_02126 PF00892 EamA-like transporter family APT_02127 PF03746 LamB/YcsF family APT_02128 PF02626 Carboxyltransferase domain, subdomain A and B APT_02130 PF00106 short chain dehydrogenase APT_02132 PF02785 Biotin carboxylase C-terminal domain APT_02132 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT_02132 PF00289 Biotin carboxylase, N-terminal domain APT_02135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_02135 PF03466 LysR substrate binding domain APT_02136 PF01425 Amidase APT_02137 PF00106 short chain dehydrogenase APT_02138 PF00128 Alpha amylase, catalytic domain APT_02139 PF00128 Alpha amylase, catalytic domain APT_02139 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT_02139 PF11941 Domain of unknown function (DUF3459) APT_02140 PF00128 Alpha amylase, catalytic domain APT_02140 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT_02140 PF02806 Alpha amylase, C-terminal all-beta domain APT_02141 PF08323 Starch synthase catalytic domain APT_02141 PF00534 Glycosyl transferases group 1 APT_02142 PF00128 Alpha amylase, catalytic domain APT_02142 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT_02145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_02145 PF00205 Thiamine pyrophosphate enzyme, central domain APT_02145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_02146 PF01494 FAD binding domain APT_02147 PF02630 SCO1/SenC APT_02156 PF12161 HsdM N-terminal domain APT_02156 PF02384 N-6 DNA Methylase APT_02158 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APT_02158 PF18766 SWI2/SNF2 ATPase APT_02158 PF11867 Domain of unknown function (DUF3387) APT_02160 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_02160 PF00698 Acyl transferase domain APT_02160 PF16197 Ketoacyl-synthetase C-terminal extension APT_02160 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_02160 PF08659 KR domain APT_02160 PF00550 Phosphopantetheine attachment site APT_02161 PF00271 Helicase conserved C-terminal domain APT_02164 PF09386 Antitoxin ParD APT_02165 PF05016 ParE toxin of type II toxin-antitoxin system, parDE APT_02169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_02169 PF03466 LysR substrate binding domain APT_02170 PF04632 Fusaric acid resistance protein family APT_02174 PF11412 Disulphide bond corrector protein DsbC APT_02174 PF02683 Cytochrome C biogenesis protein transmembrane region APT_02175 PF00893 Small Multidrug Resistance protein APT_02176 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT_02176 PF02403 Seryl-tRNA synthetase N-terminal domain APT_02177 PF00902 Sec-independent protein translocase protein (TatC) APT_02178 PF02416 mttA/Hcf106 family APT_02179 PF04079 Segregation and condensation complex subunit ScpB APT_02180 PF02616 Segregation and condensation protein ScpA APT_02182 PF05746 DALR anticodon binding domain APT_02182 PF00750 tRNA synthetases class I (R) APT_02182 PF03485 Arginyl tRNA synthetase N terminal domain APT_02183 PF01966 HD domain APT_02183 PF13286 Phosphohydrolase-associated domain APT_02184 PF01521 Iron-sulphur cluster biosynthesis APT_02185 PF03372 Endonuclease/Exonuclease/phosphatase family APT_02189 PF08042 PqqA family APT_02190 PF12706 Beta-lactamase superfamily domain APT_02191 PF03070 TENA/THI-4/PQQC family APT_02192 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APT_02193 PF13186 Iron-sulfur cluster-binding domain APT_02193 PF04055 Radical SAM superfamily APT_02195 PF00574 Clp protease APT_02197 PF00155 Aminotransferase class I and II APT_02198 PF03447 Homoserine dehydrogenase, NAD binding domain APT_02198 PF00742 Homoserine dehydrogenase APT_02198 PF01842 ACT domain APT_02199 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APT_02200 PF02272 DHHA1 domain APT_02200 PF17768 RecJ OB domain APT_02200 PF01368 DHH family APT_02201 PF04545 Sigma-70, region 4 APT_02201 PF00140 Sigma-70 factor, region 1.2 APT_02201 PF04542 Sigma-70 region 2 APT_02202 PF00849 RNA pseudouridylate synthase APT_02203 PF01032 FecCD transport family APT_02204 PF00005 ABC transporter APT_02205 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APT_02206 PF01063 Amino-transferase class IV APT_02207 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APT_02207 PF01367 5'-3' exonuclease, C-terminal SAM fold APT_02207 PF00476 DNA polymerase family A APT_02207 PF01612 3'-5' exonuclease APT_02210 PF08946 Osmosensory transporter coiled coil APT_02210 PF00083 Sugar (and other) transporter APT_02213 PF02322 Cytochrome bd terminal oxidase subunit II APT_02214 PF01654 Cytochrome bd terminal oxidase subunit I APT_02216 PF04454 Encapsulating protein for peroxidase APT_02217 PF00324 Amino acid permease APT_02219 PF13360 PQQ-like domain APT_02219 PF01011 PQQ enzyme repeat APT_02221 PF14552 Tautomerase enzyme APT_02222 PF00202 Aminotransferase class-III APT_02223 PF00155 Aminotransferase class I and II APT_02223 PF00392 Bacterial regulatory proteins, gntR family APT_02224 PF07687 Peptidase dimerisation domain APT_02224 PF01546 Peptidase family M20/M25/M40 APT_02225 PF01180 Dihydroorotate dehydrogenase APT_02226 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_02226 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT_02229 PF01979 Amidohydrolase family APT_02230 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT_02232 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APT_02233 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APT_02235 PF02556 Preprotein translocase subunit SecB APT_02237 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT_02238 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APT_02240 PF03702 Anhydro-N-acetylmuramic acid kinase APT_02242 PF00474 Sodium:solute symporter family APT_02244 PF13532 2OG-Fe(II) oxygenase superfamily APT_02245 PF00144 Beta-lactamase APT_02246 PF01381 Helix-turn-helix APT_02247 PF00042 Globin APT_02247 PF00175 Oxidoreductase NAD-binding domain APT_02247 PF00970 Oxidoreductase FAD-binding domain APT_02248 PF00528 Binding-protein-dependent transport system inner membrane component APT_02249 PF09383 NIL domain APT_02249 PF00005 ABC transporter APT_02250 PF03180 NLPA lipoprotein APT_02251 PF01565 FAD binding domain APT_02251 PF02913 FAD linked oxidases, C-terminal domain APT_02252 PF10414 Sirohaem synthase dimerisation region APT_02252 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_02252 PF14824 Sirohaem biosynthesis protein central APT_02253 PF07859 alpha/beta hydrolase fold APT_02254 PF01047 MarR family APT_02255 PF01425 Amidase APT_02256 PF01613 Flavin reductase like domain APT_02257 PF00596 Class II Aldolase and Adducin N-terminal domain APT_02259 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_02262 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT_02262 PF00355 Rieske [2Fe-2S] domain APT_02264 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT_02266 PF00171 Aldehyde dehydrogenase family APT_02267 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_02267 PF13360 PQQ-like domain APT_02268 PF07690 Major Facilitator Superfamily APT_02271 PF00528 Binding-protein-dependent transport system inner membrane component APT_02272 PF00528 Binding-protein-dependent transport system inner membrane component APT_02273 PF13416 Bacterial extracellular solute-binding protein APT_02274 PF08402 TOBE domain APT_02274 PF00005 ABC transporter APT_02275 PF00171 Aldehyde dehydrogenase family APT_02278 PF13640 2OG-Fe(II) oxygenase superfamily APT_02278 PF18331 PKHD-type hydroxylase C-terminal domain APT_02281 PF07715 TonB-dependent Receptor Plug Domain APT_02281 PF00593 TonB dependent receptor APT_02282 PF01618 MotA/TolQ/ExbB proton channel family APT_02283 PF02472 Biopolymer transport protein ExbD/TolR APT_02287 PF00355 Rieske [2Fe-2S] domain APT_02289 PF00375 Sodium:dicarboxylate symporter family APT_02293 PF05199 GMC oxidoreductase APT_02293 PF00732 GMC oxidoreductase APT_02294 PF00034 Cytochrome c APT_02294 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_02295 PF00171 Aldehyde dehydrogenase family APT_02296 PF07690 Major Facilitator Superfamily APT_02297 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APT_02298 PF02277 Phosphoribosyltransferase APT_02299 PF02654 Cobalamin-5-phosphate synthase APT_02300 PF00155 Aminotransferase class I and II APT_02301 PF03186 CobD/Cbib protein APT_02302 PF00881 Nitroreductase family APT_02303 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT_02303 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT_02304 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APT_02304 PF12557 Cob(I)alamin adenosyltransferase N terminal APT_02306 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT_02306 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT_02307 PF02514 CobN/Magnesium Chelatase APT_02308 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_02308 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT_02312 PF04632 Fusaric acid resistance protein family APT_02313 PF01184 GPR1/FUN34/yaaH family APT_02314 PF00378 Enoyl-CoA hydratase/isomerase APT_02315 PF01613 Flavin reductase like domain APT_02317 PF00950 ABC 3 transport family APT_02318 PF00005 ABC transporter APT_02320 PF01475 Ferric uptake regulator family APT_02323 PF01008 Initiation factor 2 subunit family APT_02326 PF00291 Pyridoxal-phosphate dependent enzyme APT_02327 PF00117 Glutamine amidotransferase class-I APT_02327 PF02540 NAD synthase APT_02327 PF00958 GMP synthase C terminal domain APT_02329 PF00083 Sugar (and other) transporter APT_02330 PF01551 Peptidase family M23 APT_02330 PF10145 Phage-related minor tail protein APT_02330 PF01464 Transglycosylase SLT domain APT_02331 PF02652 L-lactate permease APT_02333 PF01370 NAD dependent epimerase/dehydratase family APT_02334 PF01790 Prolipoprotein diacylglyceryl transferase APT_02340 PF00005 ABC transporter APT_02341 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APT_02344 PF00155 Aminotransferase class I and II APT_02346 PF02779 Transketolase, pyrimidine binding domain APT_02346 PF02780 Transketolase, C-terminal domain APT_02346 PF00456 Transketolase, thiamine diphosphate binding domain APT_02347 PF00923 Transaldolase/Fructose-6-phosphate aldolase APT_02348 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT_02348 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT_02350 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APT_02351 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APT_02356 PF00654 Voltage gated chloride channel APT_02357 PF00107 Zinc-binding dehydrogenase APT_02357 PF08240 Alcohol dehydrogenase GroES-like domain APT_02358 PF01168 Alanine racemase, N-terminal domain APT_02359 PF02705 K+ potassium transporter APT_02360 PF06969 HemN C-terminal domain APT_02360 PF04055 Radical SAM superfamily APT_02363 PF00005 ABC transporter APT_02364 PF00005 ABC transporter APT_02364 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT_02366 PF02653 Branched-chain amino acid transport system / permease component APT_02368 PF00512 His Kinase A (phospho-acceptor) domain APT_02368 PF01627 Hpt domain APT_02368 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT_02368 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_02368 PF00072 Response regulator receiver domain APT_02369 PF00486 Transcriptional regulatory protein, C terminal APT_02369 PF00072 Response regulator receiver domain APT_02372 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_02373 PF01730 UreF APT_02374 PF02814 UreE urease accessory protein, N-terminal domain APT_02374 PF05194 UreE urease accessory protein, C-terminal domain APT_02375 PF01979 Amidohydrolase family APT_02375 PF00449 Urease alpha-subunit, N-terminal domain APT_02376 PF00699 Urease beta subunit APT_02377 PF00547 Urease, gamma subunit APT_02378 PF01774 UreD urease accessory protein APT_02379 PF03824 High-affinity nickel-transport protein APT_02380 PF00205 Thiamine pyrophosphate enzyme, central domain APT_02380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_02380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_02384 PF00210 Ferritin-like domain APT_02385 PF03960 ArsC family APT_02387 PF03352 Methyladenine glycosylase APT_02389 PF10417 C-terminal domain of 1-Cys peroxiredoxin APT_02389 PF00578 AhpC/TSA family APT_02390 PF00753 Metallo-beta-lactamase superfamily APT_02391 PF01925 Sulfite exporter TauE/SafE APT_02393 PF03960 ArsC family APT_02395 PF02321 Outer membrane efflux protein APT_02396 PF13533 Biotin-lipoyl like APT_02398 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_02398 PF03466 LysR substrate binding domain APT_02400 PF07690 Major Facilitator Superfamily APT_02401 PF17645 Arylmalonate decarboxylase APT_02402 PF00561 alpha/beta hydrolase fold APT_02403 PF00857 Isochorismatase family APT_02405 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_02405 PF00034 Cytochrome c APT_02405 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_02406 PF01799 [2Fe-2S] binding domain APT_02406 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_02407 PF01494 FAD binding domain APT_02408 PF12802 MarR family APT_02410 PF01370 NAD dependent epimerase/dehydratase family APT_02412 PF00753 Metallo-beta-lactamase superfamily APT_02414 PF02625 XdhC and CoxI family APT_02414 PF13478 XdhC Rossmann domain APT_02418 PF02347 Glycine cleavage system P-protein APT_02419 PF01597 Glycine cleavage H-protein APT_02420 PF01571 Aminomethyltransferase folate-binding domain APT_02420 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT_02422 PF17284 Spermidine synthase tetramerisation domain APT_02423 PF02675 S-adenosylmethionine decarboxylase APT_02425 PF03466 LysR substrate binding domain APT_02425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_02426 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT_02427 PF01467 Cytidylyltransferase-like APT_02428 PF00521 DNA gyrase/topoisomerase IV, subunit A APT_02428 PF03989 DNA gyrase C-terminal domain, beta-propeller APT_02431 PF00013 KH domain APT_02431 PF01138 3' exoribonuclease family, domain 1 APT_02431 PF00575 S1 RNA binding domain APT_02431 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APT_02431 PF03725 3' exoribonuclease family, domain 2 APT_02432 PF00312 Ribosomal protein S15 APT_02433 PF01509 TruB family pseudouridylate synthase (N terminal domain) APT_02433 PF16198 tRNA pseudouridylate synthase B C-terminal domain APT_02434 PF02405 Permease MlaE APT_02435 PF00005 ABC transporter APT_02436 PF02470 MlaD protein APT_02443 PF00664 ABC transporter transmembrane region APT_02443 PF03412 Peptidase C39 family APT_02443 PF00005 ABC transporter APT_02445 PF02607 B12 binding domain APT_02445 PF02965 Vitamin B12 dependent methionine synthase, activation domain APT_02445 PF00809 Pterin binding enzyme APT_02445 PF02310 B12 binding domain APT_02445 PF02574 Homocysteine S-methyltransferase APT_02448 PF00156 Phosphoribosyl transferase domain APT_02448 PF13537 Glutamine amidotransferase domain APT_02450 PF02470 MlaD protein APT_02451 PF04403 Paraquat-inducible protein A APT_02452 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase APT_02453 PF00535 Glycosyl transferase family 2 APT_02454 PF00430 ATP synthase B/B' CF(0) APT_02455 PF00430 ATP synthase B/B' CF(0) APT_02456 PF00137 ATP synthase subunit C APT_02457 PF00119 ATP synthase A chain APT_02458 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter APT_02460 PF00448 SRP54-type protein, GTPase domain APT_02460 PF02881 SRP54-type protein, helical bundle domain APT_02461 PF04055 Radical SAM superfamily APT_02461 PF00919 Uncharacterized protein family UPF0004 APT_02462 PF01678 Diaminopimelate epimerase APT_02463 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT_02465 PF00270 DEAD/DEAH box helicase APT_02465 PF00271 Helicase conserved C-terminal domain APT_02465 PF03880 DbpA RNA binding domain APT_02468 PF00380 Ribosomal protein S9/S16 APT_02469 PF00572 Ribosomal protein L13 APT_02472 PF01895 PhoU domain APT_02473 PF00005 ABC transporter APT_02474 PF00528 Binding-protein-dependent transport system inner membrane component APT_02475 PF00528 Binding-protein-dependent transport system inner membrane component APT_02476 PF00920 Dehydratase family APT_02479 PF08240 Alcohol dehydrogenase GroES-like domain APT_02479 PF00107 Zinc-binding dehydrogenase APT_02481 PF13180 PDZ domain APT_02485 PF10609 NUBPL iron-transfer P-loop NTPase APT_02488 PF02511 Thymidylate synthase complementing protein APT_02490 PF05683 Fumarase C-terminus APT_02490 PF05681 Fumarate hydratase (Fumerase) APT_02491 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT_02494 PF01266 FAD dependent oxidoreductase APT_02495 PF01168 Alanine racemase, N-terminal domain APT_02495 PF00842 Alanine racemase, C-terminal domain APT_02496 PF01037 Lrp/AsnC ligand binding domain APT_02497 PF02033 Ribosome-binding factor A APT_02498 PF00009 Elongation factor Tu GTP binding domain APT_02498 PF11987 Translation-initiation factor 2 APT_02498 PF08364 Bacterial translation initiation factor IF-2 associated region APT_02498 PF04760 Translation initiation factor IF-2, N-terminal region APT_02500 PF00575 S1 RNA binding domain APT_02500 PF08529 NusA N-terminal domain APT_02500 PF13184 NusA-like KH domain APT_02501 PF02576 RimP N-terminal domain APT_02501 PF17384 RimP C-terminal SH3 domain APT_02503 PF07724 AAA domain (Cdc48 subfamily) APT_02503 PF02861 Clp amino terminal domain, pathogenicity island component APT_02503 PF00004 ATPase family associated with various cellular activities (AAA) APT_02503 PF17871 AAA lid domain APT_02503 PF10431 C-terminal, D2-small domain, of ClpB protein APT_02505 PF03466 LysR substrate binding domain APT_02505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_02506 PF00528 Binding-protein-dependent transport system inner membrane component APT_02507 PF00005 ABC transporter APT_02508 PF00330 Aconitase family (aconitate hydratase) APT_02508 PF00694 Aconitase C-terminal domain APT_02509 PF00005 ABC transporter APT_02510 PF03379 CcmB protein APT_02512 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT_02512 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT_02513 PF03631 Virulence factor BrkB APT_02514 PF05036 Sporulation related domain APT_02514 PF03330 Lytic transglycolase APT_02515 PF01220 Dehydroquinase class II APT_02516 PF00364 Biotin-requiring enzyme APT_02517 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT_02517 PF02785 Biotin carboxylase C-terminal domain APT_02517 PF00289 Biotin carboxylase, N-terminal domain APT_02518 PF00083 Sugar (and other) transporter APT_02519 PF13667 ThiC-associated domain APT_02519 PF01964 Radical SAM ThiC family APT_02522 PF03239 Iron permease FTR1 family APT_02523 PF10634 Fe2+ transport protein APT_02524 PF04966 Carbohydrate-selective porin, OprB family APT_02527 PF04966 Carbohydrate-selective porin, OprB family APT_02529 PF00202 Aminotransferase class-III APT_02531 PF03652 Holliday junction resolvase APT_02532 PF02686 Glu-tRNAGln amidotransferase C subunit APT_02533 PF01425 Amidase APT_02534 PF02934 GatB/GatE catalytic domain APT_02534 PF02637 GatB domain APT_02535 PF00005 ABC transporter APT_02535 PF00664 ABC transporter transmembrane region APT_02536 PF10576 Iron-sulfur binding domain of endonuclease III APT_02536 PF00633 Helix-hairpin-helix motif APT_02536 PF00730 HhH-GPD superfamily base excision DNA repair protein APT_02537 PF00762 Ferrochelatase APT_02538 PF00730 HhH-GPD superfamily base excision DNA repair protein APT_02538 PF14815 NUDIX domain APT_02542 PF12100 Domain of unknown function (DUF3576) APT_02543 PF13603 Leucyl-tRNA synthetase, Domain 2 APT_02543 PF00133 tRNA synthetases class I (I, L, M and V) APT_02543 PF08264 Anticodon-binding domain of tRNA APT_02547 PF02321 Outer membrane efflux protein APT_02549 PF00766 Electron transfer flavoprotein FAD-binding domain APT_02549 PF01012 Electron transfer flavoprotein domain APT_02550 PF01012 Electron transfer flavoprotein domain APT_02553 PF04055 Radical SAM superfamily APT_02555 PF13545 Crp-like helix-turn-helix domain APT_02555 PF00027 Cyclic nucleotide-binding domain APT_02556 PF13180 PDZ domain APT_02557 PF14437 MafB19-like deaminase APT_02559 PF07722 Peptidase C26 APT_02560 PF00849 RNA pseudouridylate synthase APT_02560 PF01479 S4 domain APT_02562 PF00436 Single-strand binding protein family APT_02564 PF01258 Prokaryotic dksA/traR C4-type zinc finger APT_02567 PF02796 Helix-turn-helix domain of resolvase APT_02567 PF00239 Resolvase, N terminal domain APT_02569 PF00534 Glycosyl transferases group 1 APT_02569 PF13439 Glycosyltransferase Family 4 APT_02571 PF00579 tRNA synthetases class I (W and Y) APT_02572 PF01523 Putative modulator of DNA gyrase APT_02573 PF00300 Histidine phosphatase superfamily (branch 1) APT_02575 PF16363 GDP-mannose 4,6 dehydratase APT_02576 PF00483 Nucleotidyl transferase APT_02577 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APT_02578 PF04321 RmlD substrate binding domain APT_02579 PF00535 Glycosyl transferase family 2 APT_02580 PF01580 FtsK/SpoIIIE family APT_02580 PF09397 Ftsk gamma domain APT_02580 PF17854 FtsK alpha domain APT_02580 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APT_02581 PF01479 S4 domain APT_02581 PF00849 RNA pseudouridylate synthase APT_02582 PF13439 Glycosyltransferase Family 4 APT_02585 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_02586 PF00266 Aminotransferase class-V APT_02589 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APT_02591 PF09190 DALR domain APT_02591 PF01406 tRNA synthetases class I (C) catalytic domain APT_02592 PF08245 Mur ligase middle domain APT_02592 PF02875 Mur ligase family, glutamate ligase domain APT_02593 PF17848 Acetyl-coA carboxylase zinc finger domain APT_02593 PF01039 Carboxyl transferase domain APT_02594 PF00085 Thioredoxin APT_02595 PF00580 UvrD/REP helicase N-terminal domain APT_02595 PF13361 UvrD-like helicase C-terminal domain APT_02595 PF12705 PD-(D/E)XK nuclease superfamily APT_02596 PF12705 PD-(D/E)XK nuclease superfamily APT_02597 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APT_02598 PF00486 Transcriptional regulatory protein, C terminal APT_02598 PF00072 Response regulator receiver domain APT_02599 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT_02599 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT_02599 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT_02599 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT_02600 PF00809 Pterin binding enzyme APT_02601 PF01434 Peptidase family M41 APT_02601 PF00004 ATPase family associated with various cellular activities (AAA) APT_02601 PF06480 FtsH Extracellular APT_02601 PF17862 AAA+ lid domain APT_02602 PF01171 PP-loop family APT_02604 PF00691 OmpA family APT_02605 PF07676 WD40-like Beta Propeller Repeat APT_02605 PF04052 TolB amino-terminal domain APT_02607 PF02472 Biopolymer transport protein ExbD/TolR APT_02608 PF01618 MotA/TolQ/ExbB proton channel family APT_02609 PF03061 Thioesterase superfamily APT_02610 PF17864 RuvB AAA lid domain APT_02610 PF05491 RuvB C-terminal winged helix domain APT_02610 PF05496 Holliday junction DNA helicase RuvB P-loop domain APT_02611 PF01330 RuvA N terminal domain APT_02611 PF07499 RuvA, C-terminal domain APT_02612 PF02075 Crossover junction endodeoxyribonuclease RuvC APT_02613 PF01709 Transcriptional regulator APT_02614 PF01043 SecA preprotein cross-linking domain APT_02614 PF07516 SecA Wing and Scaffold domain APT_02614 PF07517 SecA DEAD-like domain APT_02614 PF02810 SEC-C motif APT_02616 PF01960 ArgJ family APT_02618 PF00924 Mechanosensitive ion channel APT_02626 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT_02626 PF03807 NADP oxidoreductase coenzyme F420-dependent APT_02629 PF00216 Bacterial DNA-binding protein APT_02633 PF00535 Glycosyl transferase family 2 APT_02634 PF00795 Carbon-nitrogen hydrolase APT_02634 PF02540 NAD synthase APT_02635 PF00475 Imidazoleglycerol-phosphate dehydratase APT_02636 PF00117 Glutamine amidotransferase class-I APT_02637 PF00977 Histidine biosynthesis protein APT_02638 PF00977 Histidine biosynthesis protein APT_02639 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APT_02640 PF01230 HIT domain APT_02641 PF00881 Nitroreductase family APT_02642 PF01494 FAD binding domain APT_02643 PF13811 Domain of unknown function (DUF4186) APT_02647 PF17762 HTH domain found in ParB protein APT_02647 PF02195 ParB-like nuclease domain APT_02648 PF13614 AAA domain APT_02649 PF02527 rRNA small subunit methyltransferase G APT_02650 PF13932 GidA associated domain APT_02650 PF01134 Glucose inhibited division protein A APT_02651 PF10396 GTP-binding protein TrmE N-terminus APT_02651 PF12631 MnmE helical domain APT_02651 PF01926 50S ribosome-binding GTPase APT_02652 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT_02652 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT_02656 PF03641 Possible lysine decarboxylase APT_02657 PF07690 Major Facilitator Superfamily APT_02660 PF13419 Haloacid dehalogenase-like hydrolase APT_02661 PF01208 Uroporphyrinogen decarboxylase (URO-D) APT_02662 PF02545 Maf-like protein APT_10003 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT_10005 PF02195 ParB-like nuclease domain APT_10005 PF17762 HTH domain found in ParB protein APT_10010 PF01609 Transposase DDE domain APT_10011 PF05443 ROS/MUCR transcriptional regulator protein APT_10019 PF00436 Single-strand binding protein family APT_10023 PF01850 PIN domain APT_10033 PF00216 Bacterial DNA-binding protein APT_10034 PF00239 Resolvase, N terminal domain APT_10034 PF02796 Helix-turn-helix domain of resolvase APT_10041 PF01810 LysE type translocator APT_10044 PF05443 ROS/MUCR transcriptional regulator protein APT_10047 PF00239 Resolvase, N terminal domain APT_10047 PF02796 Helix-turn-helix domain of resolvase APT_10056 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system APT_10064 PF00291 Pyridoxal-phosphate dependent enzyme APT_10067 PF00665 Integrase core domain APT_10067 PF13276 HTH-like domain APT_10067 PF13333 Integrase core domain APT_10068 PF00665 Integrase core domain APT_10068 PF13333 Integrase core domain APT_10068 PF13276 HTH-like domain APT_10069 PF02630 SCO1/SenC APT_10074 PF06472 ABC transporter transmembrane region 2 APT_10074 PF00005 ABC transporter APT_10075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT_10075 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT_10075 PF02824 TGS domain APT_10075 PF03129 Anticodon binding domain APT_10076 PF01475 Ferric uptake regulator family APT_10078 PF01227 GTP cyclohydrolase I APT_10079 PF01502 Phosphoribosyl-AMP cyclohydrolase APT_10080 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT_10080 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_10081 PF08240 Alcohol dehydrogenase GroES-like domain APT_10081 PF00107 Zinc-binding dehydrogenase APT_10082 PF03428 Replication protein C N-terminal domain APT_10082 PF11800 Replication protein C C-terminal region APT_10084 PF02661 Fic/DOC family APT_10094 PF02082 Transcriptional regulator APT_10096 PF00239 Resolvase, N terminal domain APT_10097 PF03352 Methyladenine glycosylase APT_10098 PF13532 2OG-Fe(II) oxygenase superfamily APT_10099 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA APT_10101 PF12833 Helix-turn-helix domain APT_10101 PF02805 Metal binding domain of Ada APT_10101 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT_10101 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT_10104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_10104 PF03466 LysR substrate binding domain APT_10105 PF00248 Aldo/keto reductase family APT_10106 PF00248 Aldo/keto reductase family APT_10107 PF02583 Metal-sensitive transcriptional repressor APT_10108 PF00107 Zinc-binding dehydrogenase APT_10108 PF08240 Alcohol dehydrogenase GroES-like domain APT_10110 PF00756 Putative esterase APT_10114 PF02630 SCO1/SenC APT_10116 PF02698 DUF218 domain APT_10120 PF13333 Integrase core domain APT_10120 PF00665 Integrase core domain APT_10120 PF13276 HTH-like domain APT_10122 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_10123 PF00654 Voltage gated chloride channel APT_10124 PF02082 Transcriptional regulator APT_10126 PF01965 DJ-1/PfpI family APT_10126 PF12833 Helix-turn-helix domain APT_10127 PF00106 short chain dehydrogenase APT_10128 PF03466 LysR substrate binding domain APT_10128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_10130 PF00753 Metallo-beta-lactamase superfamily APT_10132 PF13333 Integrase core domain APT_10132 PF00665 Integrase core domain APT_10132 PF13276 HTH-like domain APT_10133 PF13333 Integrase core domain APT_10133 PF00665 Integrase core domain APT_10133 PF13276 HTH-like domain APT_10134 PF01527 Transposase APT_10137 PF03466 LysR substrate binding domain APT_10137 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_10138 PF08267 Cobalamin-independent synthase, N-terminal domain APT_10138 PF01717 Cobalamin-independent synthase, Catalytic domain APT_10144 PF13737 Transposase DDE domain APT_10146 PF01609 Transposase DDE domain APT_10149 PF02796 Helix-turn-helix domain of resolvase APT_10149 PF00239 Resolvase, N terminal domain APT_10150 PF05443 ROS/MUCR transcriptional regulator protein APT_10154 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system APT_10156 PF01037 Lrp/AsnC ligand binding domain APT_10157 PF01810 LysE type translocator APT_10158 PF03466 LysR substrate binding domain APT_10158 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_10159 PF03547 Membrane transport protein APT_10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_10160 PF03466 LysR substrate binding domain APT_10162 PF13193 AMP-binding enzyme C-terminal domain APT_10162 PF00501 AMP-binding enzyme APT_10162 PF16177 Acetyl-coenzyme A synthetase N-terminus APT_10165 PF00534 Glycosyl transferases group 1 APT_10165 PF13439 Glycosyltransferase Family 4 APT_10166 PF00586 AIR synthase related protein, N-terminal domain APT_10166 PF02769 AIR synthase related protein, C-terminal domain APT_10169 PF00795 Carbon-nitrogen hydrolase APT_10171 PF00392 Bacterial regulatory proteins, gntR family APT_10171 PF00155 Aminotransferase class I and II APT_10173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_10173 PF03466 LysR substrate binding domain APT_10174 PF07690 Major Facilitator Superfamily APT_10177 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT_10178 PF00106 short chain dehydrogenase APT_10179 PF02311 AraC-like ligand binding domain APT_10179 PF12833 Helix-turn-helix domain APT_10180 PF00149 Calcineurin-like phosphoesterase APT_10180 PF10518 TAT (twin-arginine translocation) pathway signal sequence APT_10181 PF00106 short chain dehydrogenase APT_10185 PF00561 alpha/beta hydrolase fold APT_10191 PF01609 Transposase DDE domain APT_10192 PF13361 UvrD-like helicase C-terminal domain APT_10192 PF00580 UvrD/REP helicase N-terminal domain APT_10195 PF02811 PHP domain APT_10195 PF14579 Helix-hairpin-helix motif APT_10195 PF01336 OB-fold nucleic acid binding domain APT_10195 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT_10195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT_10196 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_10196 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_10197 PF00011 Hsp20/alpha crystallin family APT_10201 PF02899 Phage integrase, N-terminal SAM-like domain APT_10201 PF00589 Phage integrase family APT_20002 PF01527 Transposase APT_20003 PF13333 Integrase core domain APT_20003 PF13276 HTH-like domain APT_20003 PF00665 Integrase core domain APT_20004 PF00239 Resolvase, N terminal domain APT_20004 PF02796 Helix-turn-helix domain of resolvase APT_30002 PF03389 MobA/MobL family