APT_00010	PWY-6167	flavin biosynthesis II (archaea)
APT_00017	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT_00017	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT_00017	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT_00026	PWY-2941	L-lysine biosynthesis II
APT_00026	PWY-2942	L-lysine biosynthesis III
APT_00026	PWY-5097	L-lysine biosynthesis VI
APT_00026	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT_00026	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
APT_00026	PWY-6559	spermidine biosynthesis II
APT_00026	PWY-6562	norspermidine biosynthesis
APT_00026	PWY-7153	grixazone biosynthesis
APT_00026	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT_00026	PWY-7977	APT_00026
APT_00029	PWY-3781	aerobic respiration I (cytochrome c)
APT_00029	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APT_00029	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT_00029	PWY-5690	TCA cycle II (plants and fungi)
APT_00029	PWY-6728	methylaspartate cycle
APT_00029	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT_00029	PWY-7254	TCA cycle VII (acetate-producers)
APT_00029	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT_00030	PWY-3781	aerobic respiration I (cytochrome c)
APT_00030	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APT_00030	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT_00030	PWY-5690	TCA cycle II (plants and fungi)
APT_00030	PWY-6728	methylaspartate cycle
APT_00030	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT_00030	PWY-7254	TCA cycle VII (acetate-producers)
APT_00030	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT_00033	PWY-1042	glycolysis IV (plant cytosol)
APT_00033	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT_00033	PWY-6886	1-butanol autotrophic biosynthesis
APT_00033	PWY-6901	superpathway of glucose and xylose degradation
APT_00033	PWY-7003	glycerol degradation to butanol
APT_00034	PWY-1042	glycolysis IV (plant cytosol)
APT_00034	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT_00034	PWY-6901	superpathway of glucose and xylose degradation
APT_00034	PWY-7003	glycerol degradation to butanol
APT_00035	PWY-6891	thiazole biosynthesis II (Bacillus)
APT_00035	PWY-6892	thiazole biosynthesis I (E. coli)
APT_00035	PWY-7560	methylerythritol phosphate pathway II
APT_00037	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT_00037	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
APT_00045	PWY-6906	chitin derivatives degradation
APT_00045	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APT_00045	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APT_00052	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT_00052	PWY-6148	tetrahydromethanopterin biosynthesis
APT_00052	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APT_00052	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT_00054	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT_00055	PWY-7205	CMP phosphorylation
APT_00062	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT_00062	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT_00062	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT_00062	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT_00069	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT_00069	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT_00069	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT_00069	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT_00070	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT_00070	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT_00074	PWY-6871	3-methylbutanol biosynthesis
APT_00079	PWY-6605	adenine and adenosine salvage II
APT_00079	PWY-6610	adenine and adenosine salvage IV
APT_00079	PWY-7805	APT_00079
APT_00079	PWY-7807	APT_00079
APT_00088	PWY-3781	aerobic respiration I (cytochrome c)
APT_00088	PWY-4521	arsenite oxidation I (respiratory)
APT_00088	PWY-6692	Fe(II) oxidation
APT_00088	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT_00088	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
APT_00096	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT_00096	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT_00096	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT_00100	PWY-5686	UMP biosynthesis
APT_00100	PWY-7790	APT_00100
APT_00100	PWY-7791	APT_00100
APT_00112	PWY-7980	APT_00112
APT_00114	PWY-7980	APT_00114
APT_00116	PWY-6700	queuosine biosynthesis
APT_00143	PWY-7142	cyanide detoxification II
APT_00176	PWY-6098	diploterol and cycloartenol biosynthesis
APT_00176	PWY-7072	hopanoid biosynthesis (bacteria)
APT_00177	PWY-7072	hopanoid biosynthesis (bacteria)
APT_00179	PWY-7072	hopanoid biosynthesis (bacteria)
APT_00181	PWY-5152	leucodelphinidin biosynthesis
APT_00183	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
APT_00191	PWY-7805	APT_00191
APT_00191	PWY-7807	APT_00191
APT_00199	PWY-6700	queuosine biosynthesis
APT_00200	PWY-6700	queuosine biosynthesis
APT_00201	PWY-6700	queuosine biosynthesis
APT_00205	PWY-2201	folate transformations I
APT_00205	PWY-3841	folate transformations II
APT_00206	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APT_00206	PWY-2201	folate transformations I
APT_00206	PWY-3841	folate transformations II
APT_00206	PWY-5030	L-histidine degradation III
APT_00206	PWY-5497	purine nucleobases degradation II (anaerobic)
APT_00206	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APT_00206	PWY-7909	APT_00206
APT_00233	PWY-5686	UMP biosynthesis
APT_00242	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT_00242	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT_00242	PWY-6897	thiamin salvage II
APT_00242	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APT_00242	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APT_00242	PWY-7356	thiamin salvage IV (yeast)
APT_00242	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT_00248	PWY-4041	&gamma;-glutamyl cycle
APT_00248	PWY-4061	glutathione-mediated detoxification I
APT_00248	PWY-5826	hypoglycin biosynthesis
APT_00248	PWY-6842	glutathione-mediated detoxification II
APT_00248	PWY-7112	4-hydroxy-2-nonenal detoxification
APT_00248	PWY-7559	glutathione degradation (DUG pathway - yeast)
APT_00249	PWY-7799	APT_00249
APT_00249	PWY-7800	APT_00249
APT_00263	PWY-2941	L-lysine biosynthesis II
APT_00263	PWY-2942	L-lysine biosynthesis III
APT_00263	PWY-5097	L-lysine biosynthesis VI
APT_00264	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT_00264	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
APT_00266	PWY-6123	inosine-5'-phosphate biosynthesis I
APT_00266	PWY-6124	inosine-5'-phosphate biosynthesis II
APT_00266	PWY-7234	inosine-5'-phosphate biosynthesis III
APT_00278	PWY-7980	APT_00278
APT_00286	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT_00301	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT_00301	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT_00326	PWY-5747	2-methylcitrate cycle II
APT_00327	PWY-5108	L-isoleucine biosynthesis V
APT_00327	PWY-5132	humulone biosynthesis
APT_00327	PWY-5133	cohumulone biosynthesis
APT_00327	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APT_00327	PWY-7118	chitin degradation to ethanol
APT_00327	PWY-7857	APT_00327
APT_00337	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
APT_00339	PWY-3341	L-proline biosynthesis III
APT_00339	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT_00340	PWY-5381	pyridine nucleotide cycling (plants)
APT_00340	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APT_00340	PWY-7761	APT_00340
APT_00345	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT_00346	PWY-5101	L-isoleucine biosynthesis II
APT_00346	PWY-5103	L-isoleucine biosynthesis III
APT_00346	PWY-5104	L-isoleucine biosynthesis IV
APT_00346	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT_00346	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT_00346	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT_00346	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_00353	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT_00353	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT_00353	PWY-7953	APT_00353
APT_00360	PWY-5129	sphingolipid biosynthesis (plants)
APT_00360	PWY-7836	APT_00360
APT_00360	PWY-7838	APT_00360
APT_00360	PWY-7839	APT_00360
APT_00360	PWY-7841	APT_00360
APT_00362	PWY-6891	thiazole biosynthesis II (Bacillus)
APT_00362	PWY-6892	thiazole biosynthesis I (E. coli)
APT_00362	PWY-7560	methylerythritol phosphate pathway II
APT_00368	PWY-7560	methylerythritol phosphate pathway II
APT_00395	PWY-6902	chitin degradation II
APT_00395	PWY-7822	APT_00395
APT_00395	PWY-7883	APT_00395
APT_00407	PWY-5913	TCA cycle VI (obligate autotrophs)
APT_00407	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APT_00407	PWY-6638	sulfolactate degradation III
APT_00407	PWY-6642	(<i>R</i>)-cysteate degradation
APT_00407	PWY-6643	coenzyme M biosynthesis II
APT_00407	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT_00407	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT_00407	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT_00410	PWY-5667	CDP-diacylglycerol biosynthesis I
APT_00410	PWY-5981	CDP-diacylglycerol biosynthesis III
APT_00410	PWY-7902	APT_00410
APT_00415	PWY-6967	methylamine degradation I
APT_00418	PWY-6967	methylamine degradation I
APT_00511	PWY-2201	folate transformations I
APT_00511	PWY-5497	purine nucleobases degradation II (anaerobic)
APT_00511	PWY-7909	APT_00511
APT_00534	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APT_00534	PWY-7494	choline degradation IV
APT_00565	PWY-1042	glycolysis IV (plant cytosol)
APT_00565	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT_00565	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT_00565	PWY-5723	Rubisco shunt
APT_00565	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT_00565	PWY-6886	1-butanol autotrophic biosynthesis
APT_00565	PWY-6901	superpathway of glucose and xylose degradation
APT_00565	PWY-7003	glycerol degradation to butanol
APT_00565	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT_00565	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT_00574	PWY-101	photosynthesis light reactions
APT_00575	PWY-5913	TCA cycle VI (obligate autotrophs)
APT_00575	PWY-6549	L-glutamine biosynthesis III
APT_00575	PWY-6728	methylaspartate cycle
APT_00575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT_00575	PWY-7124	ethylene biosynthesis V (engineered)
APT_00575	PWY-7254	TCA cycle VII (acetate-producers)
APT_00575	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT_00579	PWY-381	nitrate reduction II (assimilatory)
APT_00579	PWY-5675	nitrate reduction V (assimilatory)
APT_00579	PWY-6549	L-glutamine biosynthesis III
APT_00579	PWY-6963	ammonia assimilation cycle I
APT_00579	PWY-6964	ammonia assimilation cycle II
APT_00586	PWY-5344	L-homocysteine biosynthesis
APT_00589	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT_00589	PWY-5743	3-hydroxypropanoate cycle
APT_00589	PWY-5744	glyoxylate assimilation
APT_00589	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT_00589	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT_00589	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT_00589	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT_00591	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT_00591	PWY-6148	tetrahydromethanopterin biosynthesis
APT_00591	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APT_00591	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT_00591	PWY-7852	APT_00591
APT_00591	PWY-7853	APT_00591
APT_00594	PWY-6012	acyl carrier protein metabolism I
APT_00594	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APT_00594	PWY-6289	petrobactin biosynthesis
APT_00601	PWY-5667	CDP-diacylglycerol biosynthesis I
APT_00601	PWY-5981	CDP-diacylglycerol biosynthesis III
APT_00601	PWY-7817	APT_00601
APT_00602	PWY-7560	methylerythritol phosphate pathway II
APT_00607	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT_00607	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT_00607	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT_00607	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT_00607	PWY-6113	superpathway of mycolate biosynthesis
APT_00607	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT_00607	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT_00607	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT_00607	PWY-7663	gondoate biosynthesis (anaerobic)
APT_00607	PWY-7664	oleate biosynthesis IV (anaerobic)
APT_00607	PWY-7858	APT_00607
APT_00607	PWYG-321	mycolate biosynthesis
APT_00610	PWY-5386	methylglyoxal degradation I
APT_00616	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT_00616	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT_00627	PWY-5963	thio-molybdenum cofactor biosynthesis
APT_00636	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT_00652	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
APT_00652	PWY-6853	ethylene biosynthesis II (microbes)
APT_00652	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT_00655	PWY-5108	L-isoleucine biosynthesis V
APT_00655	PWY-5132	humulone biosynthesis
APT_00655	PWY-5133	cohumulone biosynthesis
APT_00655	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APT_00655	PWY-7118	chitin degradation to ethanol
APT_00655	PWY-7857	APT_00655
APT_00677	PWY-4981	L-proline biosynthesis II (from arginine)
APT_00677	PWY-4984	urea cycle
APT_00677	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT_00682	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APT_00683	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APT_00683	PWY-5389	3-methylthiopropanoate biosynthesis
APT_00685	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APT_00685	PWY-6167	flavin biosynthesis II (archaea)
APT_00685	PWY-6168	flavin biosynthesis III (fungi)
APT_00685	PWY-7863	APT_00685
APT_00687	PWY-7884	APT_00687
APT_00697	PWY-6936	seleno-amino acid biosynthesis
APT_00706	PWY-5686	UMP biosynthesis
APT_00706	PWY-7790	APT_00706
APT_00706	PWY-7791	APT_00706
APT_00707	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT_00711	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT_00712	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT_00713	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT_00713	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT_00716	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT_00721	PWY-5386	methylglyoxal degradation I
APT_00730	PWY-5669	phosphatidylethanolamine biosynthesis I
APT_00734	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT_00734	PWY-6164	3-dehydroquinate biosynthesis I
APT_00737	PWY-4381	fatty acid biosynthesis initiation I
APT_00737	PWY-5743	3-hydroxypropanoate cycle
APT_00737	PWY-5744	glyoxylate assimilation
APT_00737	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT_00737	PWY-6722	candicidin biosynthesis
APT_00739	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT_00744	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT_00744	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT_00745	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT_00745	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT_00753	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT_00803	PWY-6654	phosphopantothenate biosynthesis III
APT_00806	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT_00806	PWY-5057	L-valine degradation II
APT_00806	PWY-5076	L-leucine degradation III
APT_00806	PWY-5078	L-isoleucine degradation II
APT_00806	PWY-5079	L-phenylalanine degradation III
APT_00806	PWY-5082	L-methionine degradation III
APT_00806	PWY-5480	pyruvate fermentation to ethanol I
APT_00806	PWY-5486	pyruvate fermentation to ethanol II
APT_00806	PWY-5751	phenylethanol biosynthesis
APT_00806	PWY-6313	serotonin degradation
APT_00806	PWY-6333	acetaldehyde biosynthesis I
APT_00806	PWY-6342	noradrenaline and adrenaline degradation
APT_00806	PWY-6587	pyruvate fermentation to ethanol III
APT_00806	PWY-6802	salidroside biosynthesis
APT_00806	PWY-6871	3-methylbutanol biosynthesis
APT_00806	PWY-7013	L-1,2-propanediol degradation
APT_00806	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_00806	PWY-7118	chitin degradation to ethanol
APT_00806	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT_00808	PWY-3821	galactose degradation III
APT_00808	PWY-6317	galactose degradation I (Leloir pathway)
APT_00808	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT_00808	PWY-6527	stachyose degradation
APT_00808	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT_00808	PWY-7344	UDP-D-galactose biosynthesis
APT_00810	PWY-2941	L-lysine biosynthesis II
APT_00810	PWY-2942	L-lysine biosynthesis III
APT_00810	PWY-5097	L-lysine biosynthesis VI
APT_00811	PWY-4983	L-citrulline-nitric oxide cycle
APT_00811	PWY-4984	urea cycle
APT_00811	PWY-5	canavanine biosynthesis
APT_00811	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT_00811	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT_00814	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT_00815	PWY-7851	APT_00815
APT_00820	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT_00820	PWY-5723	Rubisco shunt
APT_00822	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT_00822	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APT_00823	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT_00823	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT_00823	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT_00852	PWY-7801	APT_00852
APT_00899	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT_00931	PWY-1042	glycolysis IV (plant cytosol)
APT_00931	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT_00931	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT_00931	PWY-5723	Rubisco shunt
APT_00931	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT_00931	PWY-6886	1-butanol autotrophic biosynthesis
APT_00931	PWY-6901	superpathway of glucose and xylose degradation
APT_00931	PWY-7003	glycerol degradation to butanol
APT_00931	PWY-7124	ethylene biosynthesis V (engineered)
APT_00931	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT_00934	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT_00934	PWY-5686	UMP biosynthesis
APT_00934	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT_00934	PWY-7790	APT_00934
APT_00934	PWY-7791	APT_00934
APT_00935	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT_00935	PWY-5686	UMP biosynthesis
APT_00935	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT_00935	PWY-7790	APT_00935
APT_00935	PWY-7791	APT_00935
APT_00962	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT_00976	PWY-6531	mannitol cycle
APT_00996	PWY-6123	inosine-5'-phosphate biosynthesis I
APT_00996	PWY-7234	inosine-5'-phosphate biosynthesis III
APT_01009	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT_01009	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT_01009	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT_01009	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT_01009	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT_01009	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT_01009	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT_01009	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT_01010	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT_01010	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT_01010	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT_01010	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT_01010	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT_01010	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT_01010	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT_01010	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT_01013	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT_01013	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT_01014	PWY-5686	UMP biosynthesis
APT_01014	PWY-7790	APT_01014
APT_01014	PWY-7791	APT_01014
APT_01018	PWY-3461	L-tyrosine biosynthesis II
APT_01018	PWY-3462	L-phenylalanine biosynthesis II
APT_01018	PWY-6120	L-tyrosine biosynthesis III
APT_01018	PWY-6627	salinosporamide A biosynthesis
APT_01018	PWY-7626	bacilysin biosynthesis
APT_01032	PWY-7533	gliotoxin biosynthesis
APT_01034	PWY-5269	cardiolipin biosynthesis II
APT_01034	PWY-5668	cardiolipin biosynthesis I
APT_01034	PWY-7817	APT_01034
APT_01037	PWY-6823	molybdenum cofactor biosynthesis
APT_01037	PWY-7887	APT_01037
APT_01041	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APT_01043	PWY-6823	molybdenum cofactor biosynthesis
APT_01046	PWY-1042	glycolysis IV (plant cytosol)
APT_01046	PWY-1622	formaldehyde assimilation I (serine pathway)
APT_01046	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT_01046	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT_01046	PWY-5723	Rubisco shunt
APT_01046	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT_01046	PWY-6886	1-butanol autotrophic biosynthesis
APT_01046	PWY-6901	superpathway of glucose and xylose degradation
APT_01046	PWY-7003	glycerol degradation to butanol
APT_01046	PWY-7124	ethylene biosynthesis V (engineered)
APT_01046	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT_01048	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT_01048	PWY-7806	APT_01048
APT_01050	PWY-6891	thiazole biosynthesis II (Bacillus)
APT_01050	PWY-6892	thiazole biosynthesis I (E. coli)
APT_01051	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT_01051	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT_01051	PWY-6897	thiamin salvage II
APT_01051	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APT_01051	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APT_01051	PWY-7356	thiamin salvage IV (yeast)
APT_01051	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT_01058	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
APT_01059	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
APT_01063	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT_01063	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT_01064	PWY-3801	sucrose degradation II (sucrose synthase)
APT_01064	PWY-6527	stachyose degradation
APT_01064	PWY-7238	sucrose biosynthesis II
APT_01064	PWY-7343	UDP-glucose biosynthesis
APT_01064	PWY-7817	APT_01064
APT_01065	PWY-6749	CMP-legionaminate biosynthesis I
APT_01066	PWY-6823	molybdenum cofactor biosynthesis
APT_01073	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
APT_01073	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
APT_01073	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
APT_01073	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
APT_01073	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
APT_01073	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
APT_01073	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
APT_01073	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
APT_01073	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APT_01073	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
APT_01074	PWY-2941	L-lysine biosynthesis II
APT_01074	PWY-2942	L-lysine biosynthesis III
APT_01074	PWY-5097	L-lysine biosynthesis VI
APT_01074	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
APT_01074	PWY-6559	spermidine biosynthesis II
APT_01074	PWY-6562	norspermidine biosynthesis
APT_01074	PWY-7153	grixazone biosynthesis
APT_01074	PWY-7977	APT_01074
APT_01075	PWY-723	alkylnitronates degradation
APT_01084	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
APT_01090	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT_01090	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT_01091	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT_01091	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT_01091	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT_01091	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APT_01091	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT_01091	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT_01097	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT_01097	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT_01098	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT_01098	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT_01098	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT_01098	PWY-6113	superpathway of mycolate biosynthesis
APT_01098	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT_01098	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT_01098	PWY-7663	gondoate biosynthesis (anaerobic)
APT_01098	PWY-7664	oleate biosynthesis IV (anaerobic)
APT_01098	PWY-7858	APT_01098
APT_01098	PWYG-321	mycolate biosynthesis
APT_01099	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT_01101	PWY-7254	TCA cycle VII (acetate-producers)
APT_01103	PWY-6703	preQ<sub>0</sub> biosynthesis
APT_01104	PWY-6703	preQ<sub>0</sub> biosynthesis
APT_01105	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APT_01108	PWY-5278	sulfite oxidation III
APT_01108	PWY-5340	sulfate activation for sulfonation
APT_01108	PWY-6683	sulfate reduction III (assimilatory)
APT_01108	PWY-6932	selenate reduction
APT_01109	PWY-5278	sulfite oxidation III
APT_01109	PWY-5340	sulfate activation for sulfonation
APT_01109	PWY-6683	sulfate reduction III (assimilatory)
APT_01109	PWY-6932	selenate reduction
APT_01111	PWY-6683	sulfate reduction III (assimilatory)
APT_01113	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
APT_01122	PWY-5367	petroselinate biosynthesis
APT_01122	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT_01122	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT_01122	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT_01122	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT_01122	PWY-6113	superpathway of mycolate biosynthesis
APT_01122	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT_01122	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT_01122	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT_01122	PWY-7663	gondoate biosynthesis (anaerobic)
APT_01122	PWY-7664	oleate biosynthesis IV (anaerobic)
APT_01122	PWY-7858	APT_01122
APT_01122	PWYG-321	mycolate biosynthesis
APT_01123	PWY-4381	fatty acid biosynthesis initiation I
APT_01123	PWY-6799	fatty acid biosynthesis (plant mitochondria)
APT_01123	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT_01131	PWY-2941	L-lysine biosynthesis II
APT_01131	PWY-2942	L-lysine biosynthesis III
APT_01131	PWY-5097	L-lysine biosynthesis VI
APT_01132	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
APT_01133	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT_01147	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT_01147	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT_01147	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT_01148	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT_01148	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT_01148	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT_01150	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT_01150	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT_01150	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT_01151	PWY-6123	inosine-5'-phosphate biosynthesis I
APT_01151	PWY-6124	inosine-5'-phosphate biosynthesis II
APT_01151	PWY-7234	inosine-5'-phosphate biosynthesis III
APT_01152	PWY-6123	inosine-5'-phosphate biosynthesis I
APT_01152	PWY-6124	inosine-5'-phosphate biosynthesis II
APT_01152	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT_01152	PWY-7234	inosine-5'-phosphate biosynthesis III
APT_01155	PWY-5269	cardiolipin biosynthesis II
APT_01155	PWY-5668	cardiolipin biosynthesis I
APT_01155	PWY-7817	APT_01155
APT_01160	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT_01160	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT_01161	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT_01161	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT_01165	PWY-6823	molybdenum cofactor biosynthesis
APT_01168	PWY-5958	acridone alkaloid biosynthesis
APT_01168	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT_01168	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT_01169	PWY-5958	acridone alkaloid biosynthesis
APT_01169	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT_01169	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT_01171	PWY-1042	glycolysis IV (plant cytosol)
APT_01171	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT_01171	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT_01171	PWY-7003	glycerol degradation to butanol
APT_01173	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT_01173	PWY-7177	UTP and CTP dephosphorylation II
APT_01173	PWY-7185	UTP and CTP dephosphorylation I
APT_01174	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT_01174	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT_01182	PWY-5839	menaquinol-7 biosynthesis
APT_01182	PWY-5844	menaquinol-9 biosynthesis
APT_01182	PWY-5849	menaquinol-6 biosynthesis
APT_01182	PWY-5890	menaquinol-10 biosynthesis
APT_01182	PWY-5891	menaquinol-11 biosynthesis
APT_01182	PWY-5892	menaquinol-12 biosynthesis
APT_01182	PWY-5895	menaquinol-13 biosynthesis
APT_01183	PWY-7851	APT_01183
APT_01227	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT_01227	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT_01227	PWY-6896	thiamin salvage I
APT_01227	PWY-6897	thiamin salvage II
APT_01232	PWY-4261	glycerol degradation I
APT_01234	PWY-4261	glycerol degradation I
APT_01234	PWY-6118	glycerol-3-phosphate shuttle
APT_01234	PWY-6952	glycerophosphodiester degradation
APT_01247	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT_01247	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT_01247	PWY-5057	L-valine degradation II
APT_01247	PWY-5076	L-leucine degradation III
APT_01247	PWY-5078	L-isoleucine degradation II
APT_01247	PWY-5079	L-phenylalanine degradation III
APT_01247	PWY-5082	L-methionine degradation III
APT_01247	PWY-5480	pyruvate fermentation to ethanol I
APT_01247	PWY-5486	pyruvate fermentation to ethanol II
APT_01247	PWY-5751	phenylethanol biosynthesis
APT_01247	PWY-6313	serotonin degradation
APT_01247	PWY-6333	acetaldehyde biosynthesis I
APT_01247	PWY-6342	noradrenaline and adrenaline degradation
APT_01247	PWY-6587	pyruvate fermentation to ethanol III
APT_01247	PWY-6802	salidroside biosynthesis
APT_01247	PWY-6871	3-methylbutanol biosynthesis
APT_01247	PWY-7013	L-1,2-propanediol degradation
APT_01247	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_01247	PWY-7118	chitin degradation to ethanol
APT_01247	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT_01247	PWY-7798	APT_01247
APT_01250	PWY-6654	phosphopantothenate biosynthesis III
APT_01261	PWY-6832	2-aminoethylphosphonate degradation II
APT_01264	PWY-5169	cyanurate degradation
APT_01264	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT_01266	PWY-5497	purine nucleobases degradation II (anaerobic)
APT_01266	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT_01266	PWY-6538	caffeine degradation III (bacteria, via demethylation)
APT_01266	PWY-6596	adenosine nucleotides degradation I
APT_01266	PWY-6606	guanosine nucleotides degradation II
APT_01266	PWY-6607	guanosine nucleotides degradation I
APT_01266	PWY-6608	guanosine nucleotides degradation III
APT_01266	PWY-6999	theophylline degradation
APT_01267	PWY-5497	purine nucleobases degradation II (anaerobic)
APT_01267	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT_01267	PWY-6538	caffeine degradation III (bacteria, via demethylation)
APT_01267	PWY-6596	adenosine nucleotides degradation I
APT_01267	PWY-6606	guanosine nucleotides degradation II
APT_01267	PWY-6607	guanosine nucleotides degradation I
APT_01267	PWY-6608	guanosine nucleotides degradation III
APT_01267	PWY-6999	theophylline degradation
APT_01269	PWY-5691	urate degradation to allantoin I
APT_01269	PWY-7394	urate degradation to allantoin II
APT_01269	PWY-7849	APT_01269
APT_01270	PWY-5691	urate degradation to allantoin I
APT_01270	PWY-7394	urate degradation to allantoin II
APT_01270	PWY-7849	APT_01270
APT_01274	PWY-5497	purine nucleobases degradation II (anaerobic)
APT_01274	PWY-6606	guanosine nucleotides degradation II
APT_01274	PWY-6608	guanosine nucleotides degradation III
APT_01274	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT_01288	PWY-6098	diploterol and cycloartenol biosynthesis
APT_01288	PWY-7072	hopanoid biosynthesis (bacteria)
APT_01302	PWY-6910	hydroxymethylpyrimidine salvage
APT_01302	PWY-7356	thiamin salvage IV (yeast)
APT_01302	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT_01346	PWY-5101	L-isoleucine biosynthesis II
APT_01346	PWY-5103	L-isoleucine biosynthesis III
APT_01346	PWY-5104	L-isoleucine biosynthesis IV
APT_01346	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_01352	PWY-5642	2,4-dinitrotoluene degradation
APT_01360	PWY-5169	cyanurate degradation
APT_01360	PWY-5703	urea degradation I
APT_01360	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT_01365	PWY-5874	heme degradation
APT_01380	PWY-5751	phenylethanol biosynthesis
APT_01451	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT_01452	PWY-5194	siroheme biosynthesis
APT_01452	PWY-5196	factor 430 biosynthesis
APT_01452	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT_01454	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT_01459	PWY-6683	sulfate reduction III (assimilatory)
APT_01461	PWY-5392	reductive TCA cycle II
APT_01461	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT_01461	PWY-5690	TCA cycle II (plants and fungi)
APT_01461	PWY-5913	TCA cycle VI (obligate autotrophs)
APT_01461	PWY-6728	methylaspartate cycle
APT_01461	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT_01461	PWY-7254	TCA cycle VII (acetate-producers)
APT_01461	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT_01475	PWY-5482	pyruvate fermentation to acetate II
APT_01475	PWY-5485	pyruvate fermentation to acetate IV
APT_01475	PWY-5497	purine nucleobases degradation II (anaerobic)
APT_01476	PWY-1281	sulfoacetaldehyde degradation I
APT_01476	PWY-5482	pyruvate fermentation to acetate II
APT_01476	PWY-5485	pyruvate fermentation to acetate IV
APT_01476	PWY-5497	purine nucleobases degradation II (anaerobic)
APT_01476	PWY-6637	sulfolactate degradation II
APT_01485	PWY-5964	guanylyl molybdenum cofactor biosynthesis
APT_01485	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
APT_01487	PWY-6823	molybdenum cofactor biosynthesis
APT_01498	PWY-6891	thiazole biosynthesis II (Bacillus)
APT_01498	PWY-6892	thiazole biosynthesis I (E. coli)
APT_01498	PWY-7560	methylerythritol phosphate pathway II
APT_01502	PWY-4983	L-citrulline-nitric oxide cycle
APT_01502	PWY-4984	urea cycle
APT_01502	PWY-5	canavanine biosynthesis
APT_01502	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT_01502	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT_01511	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT_01511	PWY-6596	adenosine nucleotides degradation I
APT_01511	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT_01517	PWY-723	alkylnitronates degradation
APT_01518	PWY-6348	phosphate acquisition
APT_01521	PWY-7782	APT_01521
APT_01521	PWY-7783	APT_01521
APT_01525	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
APT_01554	PWY-5913	TCA cycle VI (obligate autotrophs)
APT_01554	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APT_01554	PWY-6638	sulfolactate degradation III
APT_01554	PWY-6642	(<i>R</i>)-cysteate degradation
APT_01554	PWY-6643	coenzyme M biosynthesis II
APT_01554	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT_01554	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT_01554	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT_01574	PWY-6695	oxalate degradation II
APT_01574	PWY-6696	oxalate degradation III
APT_01574	PWY-7985	APT_01574
APT_01575	PWY-6695	oxalate degradation II
APT_01583	PWY-2723	trehalose degradation V
APT_01583	PWY-3801	sucrose degradation II (sucrose synthase)
APT_01583	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APT_01583	PWY-5661	GDP-glucose biosynthesis
APT_01583	PWY-5940	streptomycin biosynthesis
APT_01583	PWY-5941	glycogen degradation II (eukaryotic)
APT_01583	PWY-622	starch biosynthesis
APT_01583	PWY-6317	galactose degradation I (Leloir pathway)
APT_01583	PWY-6731	starch degradation III
APT_01583	PWY-6737	starch degradation V
APT_01583	PWY-6749	CMP-legionaminate biosynthesis I
APT_01583	PWY-6981	chitin biosynthesis
APT_01583	PWY-7238	sucrose biosynthesis II
APT_01583	PWY-7343	UDP-glucose biosynthesis
APT_01583	PWY-7900	APT_01583
APT_01583	PWY-7902	APT_01583
APT_01713	PWY-181	photorespiration
APT_01714	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT_01715	PWY-6749	CMP-legionaminate biosynthesis I
APT_01723	PWY-3961	phosphopantothenate biosynthesis II
APT_01724	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT_01724	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT_01743	PWY-6938	NADH repair
APT_01750	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT_01756	PWY-1622	formaldehyde assimilation I (serine pathway)
APT_01756	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT_01756	PWY-5913	TCA cycle VI (obligate autotrophs)
APT_01756	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT_01756	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
APT_01756	PWY-6549	L-glutamine biosynthesis III
APT_01756	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT_01756	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT_01756	PWY-7124	ethylene biosynthesis V (engineered)
APT_01775	PWY-3781	aerobic respiration I (cytochrome c)
APT_01775	PWY-4521	arsenite oxidation I (respiratory)
APT_01775	PWY-6692	Fe(II) oxidation
APT_01775	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT_01792	PWY-4381	fatty acid biosynthesis initiation I
APT_01803	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT_01807	PWY-6829	tRNA methylation (yeast)
APT_01807	PWY-7285	methylwyosine biosynthesis
APT_01807	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
APT_01819	PWY-6840	homoglutathione biosynthesis
APT_01819	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT_01836	PWY-6854	ethylene biosynthesis III (microbes)
APT_01846	PWY-7560	methylerythritol phosphate pathway II
APT_01851	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT_01851	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT_01851	PWY-7622	UDP-galactofuranose biosynthesis
APT_01853	PWY-3821	galactose degradation III
APT_01853	PWY-6317	galactose degradation I (Leloir pathway)
APT_01853	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT_01853	PWY-6527	stachyose degradation
APT_01853	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT_01853	PWY-7344	UDP-D-galactose biosynthesis
APT_01857	PWY-7183	pyrimidine nucleobases salvage I
APT_01860	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APT_01860	PWY-7820	APT_01860
APT_01863	PWY-6936	seleno-amino acid biosynthesis
APT_01863	PWY-7274	D-cycloserine biosynthesis
APT_01863	PWY-7870	APT_01863
APT_01874	PWY-2301	<i>myo</i>-inositol biosynthesis
APT_01874	PWY-4702	phytate degradation I
APT_01874	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
APT_01900	PWY-6502	oxidized GTP and dGTP detoxification
APT_01901	PWY-5659	GDP-mannose biosynthesis
APT_01901	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APT_01904	PWY-5663	tetrahydrobiopterin biosynthesis I
APT_01904	PWY-5664	tetrahydrobiopterin biosynthesis II
APT_01904	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT_01904	PWY-6703	preQ<sub>0</sub> biosynthesis
APT_01904	PWY-6983	tetrahydrobiopterin biosynthesis III
APT_01904	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT_01904	PWY-7852	APT_01904
APT_01919	PWY-6167	flavin biosynthesis II (archaea)
APT_01919	PWY-6168	flavin biosynthesis III (fungi)
APT_01920	PWY-6167	flavin biosynthesis II (archaea)
APT_01920	PWY-6168	flavin biosynthesis III (fungi)
APT_01920	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT_01920	PWY-7991	APT_01920
APT_01921	PWY-6167	flavin biosynthesis II (archaea)
APT_01921	PWY-6168	flavin biosynthesis III (fungi)
APT_01921	PWY-7980	APT_01921
APT_01922	PWY-7991	APT_01922
APT_01926	PWY-3781	aerobic respiration I (cytochrome c)
APT_01926	PWY-6692	Fe(II) oxidation
APT_01926	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
APT_01926	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT_01938	PWY-3341	L-proline biosynthesis III
APT_01938	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT_01941	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT_01950	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT_01950	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT_01950	PWY-7953	APT_01950
APT_01951	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT_01951	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT_01951	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT_01952	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT_01952	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT_01953	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT_01953	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT_01953	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT_01953	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT_01954	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT_01954	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT_01954	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT_01954	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT_01955	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT_01955	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT_01955	PWY-7953	APT_01955
APT_01956	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT_01956	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT_01956	PWY-7953	APT_01956
APT_01957	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT_01957	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT_01957	PWY-7953	APT_01957
APT_01965	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT_01965	PWY-6549	L-glutamine biosynthesis III
APT_01965	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT_01965	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT_01970	PWY-6164	3-dehydroquinate biosynthesis I
APT_01971	PWY-5381	pyridine nucleotide cycling (plants)
APT_01973	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT_01980	PWY-5103	L-isoleucine biosynthesis III
APT_01980	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_01981	PWY-5101	L-isoleucine biosynthesis II
APT_01981	PWY-5103	L-isoleucine biosynthesis III
APT_01981	PWY-5104	L-isoleucine biosynthesis IV
APT_01981	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT_01981	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT_01981	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT_01981	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_01982	PWY-5101	L-isoleucine biosynthesis II
APT_01982	PWY-5103	L-isoleucine biosynthesis III
APT_01982	PWY-5104	L-isoleucine biosynthesis IV
APT_01982	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT_01982	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT_01982	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT_01982	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_01983	PWY-2781	<i>cis</i>-zeatin biosynthesis
APT_01991	PWY-1622	formaldehyde assimilation I (serine pathway)
APT_01991	PWY-181	photorespiration
APT_01991	PWY-2161	folate polyglutamylation
APT_01991	PWY-2201	folate transformations I
APT_01991	PWY-3661	glycine betaine degradation I
APT_01991	PWY-3661-1	glycine betaine degradation II (mammalian)
APT_01991	PWY-3841	folate transformations II
APT_01991	PWY-5497	purine nucleobases degradation II (anaerobic)
APT_01994	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT_01994	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT_01995	PWY-7802	APT_01995
APT_02003	PWY-5958	acridone alkaloid biosynthesis
APT_02003	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT_02003	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT_02016	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT_02016	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT_02016	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT_02016	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT_02016	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APT_02016	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT_02016	PWY-7205	CMP phosphorylation
APT_02016	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT_02016	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT_02016	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT_02016	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT_02016	PWY-7224	purine deoxyribonucleosides salvage
APT_02016	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT_02016	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT_02027	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT_02027	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT_02027	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APT_02031	PWY-702	L-methionine biosynthesis II
APT_02032	PWY-7560	methylerythritol phosphate pathway II
APT_02102	PWY-5386	methylglyoxal degradation I
APT_02102	PWY-7425	2-chloroacrylate degradation I
APT_02107	PWY-5316	nicotine biosynthesis
APT_02107	PWY-5381	pyridine nucleotide cycling (plants)
APT_02107	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APT_02107	PWY-7342	superpathway of nicotine biosynthesis
APT_02108	PWY-5316	nicotine biosynthesis
APT_02108	PWY-7342	superpathway of nicotine biosynthesis
APT_02127	PWY-4041	&gamma;-glutamyl cycle
APT_02127	PWY-7942	APT_02127
APT_02129	PWY-4041	&gamma;-glutamyl cycle
APT_02129	PWY-7942	APT_02129
APT_02136	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT_02138	PWY-2661	trehalose biosynthesis V
APT_02139	PWY-2661	trehalose biosynthesis V
APT_02140	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT_02140	PWY-622	starch biosynthesis
APT_02140	PWY-7900	APT_02140
APT_02141	PWY-622	starch biosynthesis
APT_02176	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APT_02191	PWY-6420	pyrroloquinoline quinone biosynthesis
APT_02193	PWY-6823	molybdenum cofactor biosynthesis
APT_02199	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT_02200	PWY-7805	APT_02200
APT_02200	PWY-7807	APT_02200
APT_02206	PWY-5057	L-valine degradation II
APT_02206	PWY-5076	L-leucine degradation III
APT_02206	PWY-5078	L-isoleucine degradation II
APT_02206	PWY-5101	L-isoleucine biosynthesis II
APT_02206	PWY-5103	L-isoleucine biosynthesis III
APT_02206	PWY-5104	L-isoleucine biosynthesis IV
APT_02206	PWY-5108	L-isoleucine biosynthesis V
APT_02206	PWY-7767	APT_02206
APT_02233	PWY-5686	UMP biosynthesis
APT_02233	PWY-7790	APT_02233
APT_02233	PWY-7791	APT_02233
APT_02240	PWY-7883	APT_02240
APT_02252	PWY-5194	siroheme biosynthesis
APT_02252	PWY-5196	factor 430 biosynthesis
APT_02252	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT_02255	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT_02297	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT_02297	PWY-7962	APT_02297
APT_02297	PWY-7971	APT_02297
APT_02297	PWY-7972	APT_02297
APT_02298	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT_02298	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT_02298	PWY-7964	APT_02298
APT_02298	PWY-7965	APT_02298
APT_02298	PWY-7966	APT_02298
APT_02298	PWY-7967	APT_02298
APT_02298	PWY-7968	APT_02298
APT_02298	PWY-7969	APT_02298
APT_02298	PWY-7970	APT_02298
APT_02299	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT_02299	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT_02299	PWY-7961	APT_02299
APT_02299	PWY-7963	APT_02299
APT_02299	PWY-7964	APT_02299
APT_02299	PWY-7965	APT_02299
APT_02299	PWY-7966	APT_02299
APT_02299	PWY-7967	APT_02299
APT_02299	PWY-7968	APT_02299
APT_02299	PWY-7969	APT_02299
APT_02299	PWY-7970	APT_02299
APT_02299	PWY-7975	APT_02299
APT_02300	PWY-5443	aminopropanol phosphate biosynthesis I
APT_02302	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APT_02323	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APT_02323	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
APT_02327	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT_02346	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT_02346	PWY-5723	Rubisco shunt
APT_02346	PWY-6891	thiazole biosynthesis II (Bacillus)
APT_02346	PWY-6892	thiazole biosynthesis I (E. coli)
APT_02346	PWY-6901	superpathway of glucose and xylose degradation
APT_02346	PWY-7560	methylerythritol phosphate pathway II
APT_02347	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT_02347	PWY-3801	sucrose degradation II (sucrose synthase)
APT_02347	PWY-5054	sorbitol biosynthesis I
APT_02347	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APT_02347	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT_02347	PWY-5659	GDP-mannose biosynthesis
APT_02347	PWY-5723	Rubisco shunt
APT_02347	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT_02347	PWY-621	sucrose degradation III (sucrose invertase)
APT_02347	PWY-622	starch biosynthesis
APT_02347	PWY-6981	chitin biosynthesis
APT_02347	PWY-6992	1,5-anhydrofructose degradation
APT_02347	PWY-7238	sucrose biosynthesis II
APT_02347	PWY-7347	sucrose biosynthesis III
APT_02347	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT_02350	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT_02350	PWY-6855	chitin degradation I (archaea)
APT_02350	PWY-6906	chitin derivatives degradation
APT_02351	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT_02351	PWY-5723	Rubisco shunt
APT_02352	PWY-5530	sorbitol biosynthesis II
APT_02358	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT_02375	PWY-5704	urea degradation II
APT_02376	PWY-5704	urea degradation II
APT_02377	PWY-5704	urea degradation II
APT_02393	PWY-4202	arsenate detoxification I (glutaredoxin)
APT_02393	PWY-4621	arsenate detoxification II (glutaredoxin)
APT_02401	PWY-5033	nicotinate degradation II
APT_02401	PWY-6993	nicotine degradation II (pyrrolidine pathway)
APT_02401	PWY-7128	nicotine degradation III (VPP pathway)
APT_02401	PWY-722	nicotinate degradation I
APT_02423	PWY-6834	spermidine biosynthesis III
APT_02427	PWY-7851	APT_02427
APT_02445	PWY-2201	folate transformations I
APT_02445	PWY-3841	folate transformations II
APT_02445	PWY-7977	APT_02445
APT_02448	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT_02448	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT_02448	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT_02448	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT_02462	PWY-2941	L-lysine biosynthesis II
APT_02462	PWY-5097	L-lysine biosynthesis VI
APT_02476	PWY-5101	L-isoleucine biosynthesis II
APT_02476	PWY-5103	L-isoleucine biosynthesis III
APT_02476	PWY-5104	L-isoleucine biosynthesis IV
APT_02476	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_02488	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT_02490	PWY-5392	reductive TCA cycle II
APT_02490	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT_02490	PWY-5690	TCA cycle II (plants and fungi)
APT_02490	PWY-5913	TCA cycle VI (obligate autotrophs)
APT_02490	PWY-6728	methylaspartate cycle
APT_02490	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT_02490	PWY-7254	TCA cycle VII (acetate-producers)
APT_02490	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT_02495	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT_02515	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT_02515	PWY-6416	quinate degradation II
APT_02515	PWY-6707	gallate biosynthesis
APT_02519	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
APT_02533	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT_02553	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT_02575	PWY-3221	dTDP-L-rhamnose biosynthesis II
APT_02575	PWY-6808	dTDP-D-forosamine biosynthesis
APT_02575	PWY-6942	dTDP-D-desosamine biosynthesis
APT_02575	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APT_02575	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APT_02575	PWY-6974	dTDP-L-olivose biosynthesis
APT_02575	PWY-6976	dTDP-L-mycarose biosynthesis
APT_02575	PWY-7104	dTDP-L-megosamine biosynthesis
APT_02575	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APT_02575	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APT_02575	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APT_02575	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APT_02575	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APT_02575	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APT_02575	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APT_02575	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APT_02575	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APT_02575	PWY-7688	APT_02575
APT_02575	PWY-7814	APT_02575
APT_02576	PWY-3221	dTDP-L-rhamnose biosynthesis II
APT_02576	PWY-6808	dTDP-D-forosamine biosynthesis
APT_02576	PWY-6942	dTDP-D-desosamine biosynthesis
APT_02576	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APT_02576	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APT_02576	PWY-6974	dTDP-L-olivose biosynthesis
APT_02576	PWY-6976	dTDP-L-mycarose biosynthesis
APT_02576	PWY-7104	dTDP-L-megosamine biosynthesis
APT_02576	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APT_02576	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APT_02576	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APT_02576	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APT_02576	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APT_02576	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APT_02576	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APT_02576	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APT_02576	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APT_02576	PWY-7688	APT_02576
APT_02576	PWY-7814	APT_02576
APT_02584	PWY-7887	APT_02584
APT_02584	PWY-7892	APT_02584
APT_02586	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT_02587	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT_02592	PWY-2161	folate polyglutamylation
APT_02593	PWY-4381	fatty acid biosynthesis initiation I
APT_02593	PWY-5743	3-hydroxypropanoate cycle
APT_02593	PWY-5744	glyoxylate assimilation
APT_02593	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT_02593	PWY-6722	candicidin biosynthesis
APT_02599	PWY-6749	CMP-legionaminate biosynthesis I
APT_02600	PWY-6614	tetrahydrofolate biosynthesis
APT_02616	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT_02626	PWY-3341	L-proline biosynthesis III
APT_02626	PWY-4981	L-proline biosynthesis II (from arginine)
APT_02626	PWY-6344	L-ornithine degradation II (Stickland reaction)
APT_02634	PWY-5381	pyridine nucleotide cycling (plants)
APT_02634	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APT_02634	PWY-7761	APT_02634
APT_02661	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT_02661	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT_02661	PWY-7766	APT_02661
APT_10078	PWY-5663	tetrahydrobiopterin biosynthesis I
APT_10078	PWY-5664	tetrahydrobiopterin biosynthesis II
APT_10078	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT_10078	PWY-6703	preQ<sub>0</sub> biosynthesis
APT_10078	PWY-6983	tetrahydrobiopterin biosynthesis III
APT_10078	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT_10078	PWY-7852	APT_10078
APT_10102	PWY-7352	daunorubicin biosynthesis
APT_10102	PWY-7354	aclacinomycin biosynthesis
APT_10108	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT_10108	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT_10108	PWY-5057	L-valine degradation II
APT_10108	PWY-5076	L-leucine degradation III
APT_10108	PWY-5078	L-isoleucine degradation II
APT_10108	PWY-5079	L-phenylalanine degradation III
APT_10108	PWY-5082	L-methionine degradation III
APT_10108	PWY-5480	pyruvate fermentation to ethanol I
APT_10108	PWY-5486	pyruvate fermentation to ethanol II
APT_10108	PWY-5751	phenylethanol biosynthesis
APT_10108	PWY-6313	serotonin degradation
APT_10108	PWY-6333	acetaldehyde biosynthesis I
APT_10108	PWY-6342	noradrenaline and adrenaline degradation
APT_10108	PWY-6587	pyruvate fermentation to ethanol III
APT_10108	PWY-6802	salidroside biosynthesis
APT_10108	PWY-6871	3-methylbutanol biosynthesis
APT_10108	PWY-7013	L-1,2-propanediol degradation
APT_10108	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT_10108	PWY-7118	chitin degradation to ethanol
APT_10108	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT_10108	PWY-7798	APT_10108
APT_10110	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT_10119	PWY-7352	daunorubicin biosynthesis
APT_10119	PWY-7354	aclacinomycin biosynthesis
APT_10138	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT_10138	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT_10138	PWY-6936	seleno-amino acid biosynthesis
APT_10138	PWY-702	L-methionine biosynthesis II
APT_10162	PWY-5108	L-isoleucine biosynthesis V
APT_10162	PWY-5132	humulone biosynthesis
APT_10162	PWY-5133	cohumulone biosynthesis
APT_10162	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APT_10162	PWY-7118	chitin degradation to ethanol
APT_10162	PWY-7857	APT_10162
