APT_00003	SSF103473	MFS general substrate transporter
APT_00005	SSF158997	Trm112p-like
APT_00006	SSF88697	PUA domain-like
APT_00007	SSF48452	TPR-like
APT_00007	SSF52833	Thioredoxin-like
APT_00009	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00010	SSF102215	Creatininase
APT_00011	SSF50974	Nitrous oxide reductase, N-terminal domain
APT_00012	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00013	SSF110836	Hypothetical protein SAV1430
APT_00013	SSF117916	Fe-S cluster assembly (FSCA) domain-like
APT_00014	SSF55469	FMN-dependent nitroreductase-like
APT_00015	SSF53067	Actin-like ATPase domain
APT_00016	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_00017	SSF51246	Rudiment single hybrid motif
APT_00017	SSF52440	PreATP-grasp domain
APT_00017	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_00020	SSF53383	PLP-dependent transferases
APT_00021	SSF53720	ALDH-like
APT_00022	SSF50129	GroES-like
APT_00022	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00023	SSF52467	DHS-like NAD/FAD-binding domain
APT_00025	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00025	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
APT_00026	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00026	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APT_00027	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
APT_00028	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
APT_00029	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
APT_00029	SSF51905	FAD/NAD(P)-binding domain
APT_00029	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
APT_00030	SSF46548	alpha-helical ferredoxin
APT_00030	SSF54292	2Fe-2S ferredoxin-like
APT_00031	SSF52799	(Phosphotyrosine protein) phosphatases II
APT_00032	SSF103481	Multidrug resistance efflux transporter EmrE
APT_00033	SSF53748	Phosphoglycerate kinase
APT_00034	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00034	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APT_00035	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_00035	SSF52922	TK C-terminal domain-like
APT_00037	SSF53383	PLP-dependent transferases
APT_00038	SSF52833	Thioredoxin-like
APT_00039	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APT_00040	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00040	SSF54752	RecA protein, C-terminal domain
APT_00041	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_00042	SSF46785	"Winged helix" DNA-binding domain
APT_00043	SSF74650	Galactose mutarotase-like
APT_00043	SSF81296	E set domains
APT_00044	SSF53448	Nucleotide-diphospho-sugar transferases
APT_00045	SSF51338	Composite domain of metallo-dependent hydrolases
APT_00045	SSF51556	Metallo-dependent hydrolases
APT_00046	SSF103473	MFS general substrate transporter
APT_00048	SSF48019	post-AAA+ oligomerization domain-like
APT_00048	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00049	SSF82607	YbaB-like
APT_00050	SSF111304	Recombination protein RecR
APT_00051	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00052	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
APT_00054	SSF55205	EPT/RTPC-like
APT_00055	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00056	SSF50249	Nucleic acid-binding proteins
APT_00058	SSF63829	Calcium-dependent phosphotriesterase
APT_00059	SSF52972	ITPase-like
APT_00060	SSF54211	Ribosomal protein S5 domain 2-like
APT_00060	SSF55666	Ribonuclease PH domain 2-like
APT_00061	SSF46785	"Winged helix" DNA-binding domain
APT_00061	SSF55781	GAF domain-like
APT_00062	SSF53955	Lysozyme-like
APT_00062	SSF56601	beta-lactamase/transpeptidase-like
APT_00063	SSF75620	Release factor
APT_00064	SSF74653	TolA/TonB C-terminal domain
APT_00068	SSF48452	TPR-like
APT_00070	SSF56519	Penicillin binding protein dimerisation domain
APT_00070	SSF56601	beta-lactamase/transpeptidase-like
APT_00073	SSF53067	Actin-like ATPase domain
APT_00074	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
APT_00074	SSF51569	Aldolase
APT_00077	SSF103473	MFS general substrate transporter
APT_00078	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_00078	SSF52172	CheY-like
APT_00078	SSF55785	PYP-like sensor domain (PAS domain)
APT_00078	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00079	SSF53271	PRTase-like
APT_00081	SSF82544	GckA/TtuD-like
APT_00082	SSF52141	Uracil-DNA glycosylase-like
APT_00083	SSF46626	Cytochrome c
APT_00084	SSF46626	Cytochrome c
APT_00084	SSF50998	Quinoprotein alcohol dehydrogenase-like
APT_00087	SSF49503	Cupredoxins
APT_00087	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
APT_00088	SSF81442	Cytochrome c oxidase subunit I-like
APT_00089	SSF81452	Cytochrome c oxidase subunit III-like
APT_00091	SSF54862	4Fe-4S ferredoxins
APT_00092	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00093	SSF53187	Zn-dependent exopeptidases
APT_00094	SSF46785	"Winged helix" DNA-binding domain
APT_00097	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00098	SSF53383	PLP-dependent transferases
APT_00100	SSF51338	Composite domain of metallo-dependent hydrolases
APT_00100	SSF51556	Metallo-dependent hydrolases
APT_00101	SSF51905	FAD/NAD(P)-binding domain
APT_00101	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
APT_00102	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
APT_00102	SSF63380	Riboflavin synthase domain-like
APT_00104	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00105	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00107	SSF53474	alpha/beta-Hydrolases
APT_00107	SSF69322	Tricorn protease domain 2
APT_00108	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00108	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
APT_00109	SSF50104	Translation proteins SH3-like domain
APT_00109	SSF82679	N-utilization substance G protein NusG, N-terminal domain
APT_00111	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
APT_00112	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
APT_00112	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
APT_00112	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00113	SSF52943	ATP synthase (F1-ATPase), gamma subunit
APT_00114	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
APT_00114	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
APT_00114	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00115	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
APT_00116	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
APT_00117	SSF47819	HRDC-like
APT_00117	SSF53098	Ribonuclease H-like
APT_00118	SSF53613	Ribokinase-like
APT_00122	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00123	SSF161098	MetI-like
APT_00124	SSF161098	MetI-like
APT_00127	SSF53850	Periplasmic binding protein-like II
APT_00128	SSF46689	Homeodomain-like
APT_00133	SSF111369	HlyD-like secretion proteins
APT_00134	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
APT_00134	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
APT_00134	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_00135	SSF56954	Outer membrane efflux proteins (OEP)
APT_00136	SSF50249	Nucleic acid-binding proteins
APT_00138	SSF56935	Porins
APT_00139	SSF51294	Hedgehog/intein (Hint) domain
APT_00140	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_00142	SSF56935	Porins
APT_00143	SSF56317	Carbon-nitrogen hydrolase
APT_00144	SSF46894	C-terminal effector domain of the bipartite response regulators
APT_00144	SSF52172	CheY-like
APT_00145	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_00145	SSF52172	CheY-like
APT_00145	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00146	SSF53822	Periplasmic binding protein-like I
APT_00149	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00150	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00156	SSF53474	alpha/beta-Hydrolases
APT_00157	SSF46955	Putative DNA-binding domain
APT_00158	SSF52317	Class I glutamine amidotransferase-like
APT_00159	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00162	SSF56349	DNA breaking-rejoining enzymes
APT_00165	SSF161098	MetI-like
APT_00166	SSF53850	Periplasmic binding protein-like II
APT_00167	SSF50331	MOP-like
APT_00167	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00170	SSF46785	"Winged helix" DNA-binding domain
APT_00172	SSF111369	HlyD-like secretion proteins
APT_00173	SSF56954	Outer membrane efflux proteins (OEP)
APT_00175	SSF53167	Purine and uridine phosphorylases
APT_00176	SSF48239	Terpenoid cyclases/Protein prenyltransferases
APT_00177	SSF51905	FAD/NAD(P)-binding domain
APT_00178	SSF48576	Terpenoid synthases
APT_00179	SSF48576	Terpenoid synthases
APT_00180	SSF53448	Nucleotide-diphospho-sugar transferases
APT_00181	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00183	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_00183	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00184	SSF48452	TPR-like
APT_00185	SSF57840	Ribosomal protein L36
APT_00186	SSF46785	"Winged helix" DNA-binding domain
APT_00186	SSF53850	Periplasmic binding protein-like II
APT_00187	SSF52833	Thioredoxin-like
APT_00188	SSF69118	AhpD-like
APT_00189	SSF101874	YceI-like
APT_00190	SSF53213	LigB-like
APT_00191	SSF50324	Inorganic pyrophosphatase
APT_00192	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00193	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_00196	SSF158682	TerB-like
APT_00196	SSF46565	Chaperone J-domain
APT_00199	SSF46548	alpha-helical ferredoxin
APT_00200	SSF51713	tRNA-guanine transglycosylase
APT_00201	SSF111337	QueA-like
APT_00203	SSF49777	PEBP-like
APT_00205	SSF51730	FAD-linked oxidoreductase
APT_00206	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00206	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
APT_00207	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_00208	SSF55298	YjgF-like
APT_00214	SSF56784	HAD-like
APT_00215	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_00216	SSF158442	DsbB-like
APT_00217	SSF53448	Nucleotide-diphospho-sugar transferases
APT_00217	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_00218	SSF55811	Nudix
APT_00219	SSF51430	NAD(P)-linked oxidoreductase
APT_00220	SSF46955	Putative DNA-binding domain
APT_00221	SSF46600	C-terminal UvrC-binding domain of UvrB
APT_00221	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00223	SSF63411	LuxS/MPP-like metallohydrolase
APT_00225	SSF56784	HAD-like
APT_00227	SSF53448	Nucleotide-diphospho-sugar transferases
APT_00230	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
APT_00230	SSF56672	DNA/RNA polymerases
APT_00231	SSF51197	Clavaminate synthase-like
APT_00233	SSF51395	FMN-linked oxidoreductases
APT_00234	SSF56784	HAD-like
APT_00235	SSF55811	Nudix
APT_00236	SSF56300	Metallo-dependent phosphatases
APT_00237	SSF100950	NagB/RpiA/CoA transferase-like
APT_00238	SSF102829	Cell division protein ZapA-like
APT_00241	SSF51569	Aldolase
APT_00242	SSF51391	Thiamin phosphate synthase
APT_00244	SSF82153	FAS1 domain
APT_00246	SSF55681	Class II aaRS and biotin synthetases
APT_00247	SSF102114	Radical SAM enzymes
APT_00248	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APT_00249	SSF55920	Creatinase/aminopeptidase
APT_00250	SSF56601	beta-lactamase/transpeptidase-like
APT_00251	SSF54736	ClpS-like
APT_00252	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00252	SSF81923	Double Clp-N motif
APT_00254	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00255	SSF143456	VC0467-like
APT_00256	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00257	SSF55298	YjgF-like
APT_00258	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_00258	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00259	SSF46894	C-terminal effector domain of the bipartite response regulators
APT_00259	SSF52172	CheY-like
APT_00260	SSF51064	Head domain of nucleotide exchange factor GrpE
APT_00260	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
APT_00261	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
APT_00261	SSF53067	Actin-like ATPase domain
APT_00262	SSF46565	Chaperone J-domain
APT_00262	SSF49493	HSP40/DnaJ peptide-binding domain
APT_00262	SSF57938	DnaJ/Hsp40 cysteine-rich domain
APT_00263	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00263	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APT_00264	SSF55973	S-adenosylmethionine synthetase
APT_00265	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00266	SSF52335	Methylglyoxal synthase-like
APT_00266	SSF53927	Cytidine deaminase-like
APT_00269	SSF103481	Multidrug resistance efflux transporter EmrE
APT_00270	SSF109604	HD-domain/PDEase-like
APT_00271	SSF55681	Class II aaRS and biotin synthetases
APT_00273	SSF47413	lambda repressor-like DNA-binding domains
APT_00274	SSF56317	Carbon-nitrogen hydrolase
APT_00275	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_00276	SSF46785	"Winged helix" DNA-binding domain
APT_00277	SSF64307	SirA-like
APT_00278	SSF50249	Nucleic acid-binding proteins
APT_00278	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00278	SSF68912	Rho N-terminal domain-like
APT_00280	SSF143865	CorA soluble domain-like
APT_00280	SSF144083	Magnesium transport protein CorA, transmembrane region
APT_00281	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APT_00282	SSF51366	Ribulose-phoshate binding barrel
APT_00283	SSF160996	HI0933 insert domain-like
APT_00283	SSF51905	FAD/NAD(P)-binding domain
APT_00284	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00285	SSF55681	Class II aaRS and biotin synthetases
APT_00286	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00287	SSF46894	C-terminal effector domain of the bipartite response regulators
APT_00287	SSF52172	CheY-like
APT_00288	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_00288	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00289	SSF53850	Periplasmic binding protein-like II
APT_00292	SSF53448	Nucleotide-diphospho-sugar transferases
APT_00293	SSF53254	Phosphoglycerate mutase-like
APT_00294	SSF54631	CBS-domain pair
APT_00294	SSF56176	FAD-binding/transporter-associated domain-like
APT_00295	SSF50129	GroES-like
APT_00295	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00296	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00296	SSF90123	ABC transporter transmembrane region
APT_00297	SSF111369	HlyD-like secretion proteins
APT_00299	SSF51294	Hedgehog/intein (Hint) domain
APT_00300	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00301	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00301	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APT_00302	SSF101386	all-alpha NTP pyrophosphatases
APT_00304	SSF110942	HSP90 C-terminal domain
APT_00304	SSF54211	Ribosomal protein S5 domain 2-like
APT_00304	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00305	SSF53187	Zn-dependent exopeptidases
APT_00316	SSF53448	Nucleotide-diphospho-sugar transferases
APT_00320	SSF54060	His-Me finger endonucleases
APT_00323	SSF47413	lambda repressor-like DNA-binding domains
APT_00324	SSF103378	2-methylcitrate dehydratase PrpD
APT_00325	SSF48256	Citrate synthase
APT_00326	SSF51621	Phosphoenolpyruvate/pyruvate domain
APT_00327	SSF56801	Acetyl-CoA synthetase-like
APT_00328	SSF103473	MFS general substrate transporter
APT_00331	SSF144052	Thermophilic metalloprotease-like
APT_00334	SSF50249	Nucleic acid-binding proteins
APT_00334	SSF55261	GAD domain-like
APT_00334	SSF55681	Class II aaRS and biotin synthetases
APT_00335	SSF53383	PLP-dependent transferases
APT_00336	SSF50715	Ribosomal protein L25-like
APT_00337	SSF53178	Peptidyl-tRNA hydrolase-like
APT_00338	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00338	SSF81271	TGS-like
APT_00339	SSF53720	ALDH-like
APT_00340	SSF52374	Nucleotidylyl transferase
APT_00341	SSF81301	Nucleotidyltransferase
APT_00342	SSF75217	alpha/beta knot
APT_00343	SSF52821	Rhodanese/Cell cycle control phosphatase
APT_00344	SSF46785	"Winged helix" DNA-binding domain
APT_00344	SSF53850	Periplasmic binding protein-like II
APT_00345	SSF117856	AF0104/ALDC/Ptd012-like
APT_00346	SSF52467	DHS-like NAD/FAD-binding domain
APT_00346	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_00348	SSF52467	DHS-like NAD/FAD-binding domain
APT_00348	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_00350	SSF100950	NagB/RpiA/CoA transferase-like
APT_00350	SSF46548	alpha-helical ferredoxin
APT_00351	SSF100950	NagB/RpiA/CoA transferase-like
APT_00353	SSF55205	EPT/RTPC-like
APT_00354	SSF51283	dUTPase-like
APT_00358	SSF88713	Glycoside hydrolase/deacetylase
APT_00359	SSF102114	Radical SAM enzymes
APT_00360	SSF53448	Nucleotide-diphospho-sugar transferases
APT_00362	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_00362	SSF52922	TK C-terminal domain-like
APT_00363	SSF102114	Radical SAM enzymes
APT_00364	SSF54631	CBS-domain pair
APT_00364	SSF56176	FAD-binding/transporter-associated domain-like
APT_00365	SSF48435	Bacterial muramidases
APT_00365	SSF53955	Lysozyme-like
APT_00366	SSF52141	Uracil-DNA glycosylase-like
APT_00367	SSF48452	TPR-like
APT_00368	SSF54211	Ribosomal protein S5 domain 2-like
APT_00368	SSF55060	GHMP Kinase, C-terminal domain
APT_00371	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00375	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00377	SSF53271	PRTase-like
APT_00378	SSF53254	Phosphoglycerate mutase-like
APT_00380	SSF140804	YidB-like
APT_00385	SSF56935	Porins
APT_00386	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00388	SSF46785	"Winged helix" DNA-binding domain
APT_00388	SSF53850	Periplasmic binding protein-like II
APT_00391	SSF56935	Porins
APT_00392	SSF53807	"Helical backbone" metal receptor
APT_00393	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
APT_00394	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00395	SSF51445	(Trans)glycosidases
APT_00395	SSF55545	beta-N-acetylhexosaminidase-like domain
APT_00396	SSF53067	Actin-like ATPase domain
APT_00397	SSF53697	SIS domain
APT_00399	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_00400	SSF51294	Hedgehog/intein (Hint) domain
APT_00401	SSF46894	C-terminal effector domain of the bipartite response regulators
APT_00402	SSF51126	Pectin lyase-like
APT_00402	SSF51294	Hedgehog/intein (Hint) domain
APT_00403	SSF48173	Cryptochrome/photolyase FAD-binding domain
APT_00403	SSF52425	Cryptochrome/photolyase, N-terminal domain
APT_00404	SSF51316	Mss4-like
APT_00407	SSF53383	PLP-dependent transferases
APT_00408	SSF51294	Hedgehog/intein (Hint) domain
APT_00409	SSF47240	Ferritin-like
APT_00410	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_00410	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00414	SSF46785	"Winged helix" DNA-binding domain
APT_00414	SSF53850	Periplasmic binding protein-like II
APT_00415	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
APT_00417	SSF52833	Thioredoxin-like
APT_00418	SSF57561	Methylamine dehydrogenase, L chain
APT_00419	SSF46626	Cytochrome c
APT_00421	SSF52833	Thioredoxin-like
APT_00423	SSF51430	NAD(P)-linked oxidoreductase
APT_00424	SSF46785	"Winged helix" DNA-binding domain
APT_00424	SSF53850	Periplasmic binding protein-like II
APT_00425	SSF53720	ALDH-like
APT_00426	SSF46626	Cytochrome c
APT_00427	SSF56003	Molybdenum cofactor-binding domain
APT_00428	SSF47741	CO dehydrogenase ISP C-domain like
APT_00428	SSF54292	2Fe-2S ferredoxin-like
APT_00430	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00433	SSF51294	Hedgehog/intein (Hint) domain
APT_00434	SSF103473	MFS general substrate transporter
APT_00438	SSF56349	DNA breaking-rejoining enzymes
APT_00451	SSF51294	Hedgehog/intein (Hint) domain
APT_00455	SSF56935	Porins
APT_00456	SSF46626	Cytochrome c
APT_00457	SSF51971	Nucleotide-binding domain
APT_00459	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00462	SSF51294	Hedgehog/intein (Hint) domain
APT_00463	SSF51294	Hedgehog/intein (Hint) domain
APT_00466	SSF51294	Hedgehog/intein (Hint) domain
APT_00467	SSF47413	lambda repressor-like DNA-binding domains
APT_00467	SSF51306	LexA/Signal peptidase
APT_00469	SSF46785	"Winged helix" DNA-binding domain
APT_00472	SSF51294	Hedgehog/intein (Hint) domain
APT_00473	SSF46689	Homeodomain-like
APT_00473	SSF53041	Resolvase-like
APT_00475	SSF102114	Radical SAM enzymes
APT_00481	SSF52821	Rhodanese/Cell cycle control phosphatase
APT_00506	SSF56935	Porins
APT_00507	SSF56112	Protein kinase-like (PK-like)
APT_00511	SSF53328	Formyltransferase
APT_00511	SSF55021	ACT-like
APT_00513	SSF46785	"Winged helix" DNA-binding domain
APT_00514	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00516	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
APT_00517	SSF47240	Ferritin-like
APT_00519	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
APT_00520	SSF51294	Hedgehog/intein (Hint) domain
APT_00521	SSF74653	TolA/TonB C-terminal domain
APT_00522	SSF55486	Metalloproteases ("zincins"), catalytic domain
APT_00523	SSF56935	Porins
APT_00524	SSF46689	Homeodomain-like
APT_00524	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_00525	SSF100950	NagB/RpiA/CoA transferase-like
APT_00526	SSF82544	GckA/TtuD-like
APT_00527	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APT_00527	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APT_00528	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00529	SSF51569	Aldolase
APT_00530	SSF51658	Xylose isomerase-like
APT_00531	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_00532	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_00532	SSF52467	DHS-like NAD/FAD-binding domain
APT_00533	SSF53720	ALDH-like
APT_00534	SSF51905	FAD/NAD(P)-binding domain
APT_00534	SSF54373	FAD-linked reductases, C-terminal domain
APT_00535	SSF103473	MFS general substrate transporter
APT_00538	SSF51294	Hedgehog/intein (Hint) domain
APT_00539	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00542	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_00543	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_00543	SSF52922	TK C-terminal domain-like
APT_00544	SSF51230	Single hybrid motif
APT_00544	SSF53474	alpha/beta-Hydrolases
APT_00545	SSF49764	HSP20-like chaperones
APT_00547	SSF51905	FAD/NAD(P)-binding domain
APT_00548	SSF50998	Quinoprotein alcohol dehydrogenase-like
APT_00549	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00549	SSF90002	Hypothetical protein YjiA, C-terminal domain
APT_00550	SSF81340	Clc chloride channel
APT_00551	SSF160240	Cation efflux protein cytoplasmic domain-like
APT_00551	SSF161111	Cation efflux protein transmembrane domain-like
APT_00552	SSF160240	Cation efflux protein cytoplasmic domain-like
APT_00552	SSF161111	Cation efflux protein transmembrane domain-like
APT_00553	SSF51905	FAD/NAD(P)-binding domain
APT_00554	SSF53474	alpha/beta-Hydrolases
APT_00555	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_00563	SSF69572	Activating enzymes of the ubiquitin-like proteins
APT_00565	SSF50800	PK beta-barrel domain-like
APT_00565	SSF51621	Phosphoenolpyruvate/pyruvate domain
APT_00565	SSF52935	PK C-terminal domain-like
APT_00566	SSF63829	Calcium-dependent phosphotriesterase
APT_00568	SSF103473	MFS general substrate transporter
APT_00570	SSF50447	Translation proteins
APT_00570	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00570	SSF54980	EF-G C-terminal domain-like
APT_00573	SSF51905	FAD/NAD(P)-binding domain
APT_00573	SSF54373	FAD-linked reductases, C-terminal domain
APT_00574	SSF51905	FAD/NAD(P)-binding domain
APT_00575	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
APT_00577	SSF53383	PLP-dependent transferases
APT_00578	SSF54913	GlnB-like
APT_00579	SSF54368	Glutamine synthetase, N-terminal domain
APT_00579	SSF55931	Glutamine synthetase/guanido kinase
APT_00580	SSF74653	TolA/TonB C-terminal domain
APT_00581	SSF50998	Quinoprotein alcohol dehydrogenase-like
APT_00583	SSF51306	LexA/Signal peptidase
APT_00584	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00584	SSF54980	EF-G C-terminal domain-like
APT_00585	SSF53474	alpha/beta-Hydrolases
APT_00586	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00587	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00588	SSF56219	DNase I-like
APT_00589	SSF53056	beta-carbonic anhydrase, cab
APT_00591	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
APT_00592	SSF63562	RPB6/omega subunit-like
APT_00593	SSF109604	HD-domain/PDEase-like
APT_00593	SSF81271	TGS-like
APT_00593	SSF81301	Nucleotidyltransferase
APT_00594	SSF56214	4'-phosphopantetheinyl transferase
APT_00595	SSF51306	LexA/Signal peptidase
APT_00596	SSF54768	dsRNA-binding domain-like
APT_00596	SSF69065	RNase III domain-like
APT_00597	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00597	SSF54814	Prokaryotic type KH domain (KH-domain type II)
APT_00598	SSF53633	Carbamate kinase-like
APT_00599	SSF55194	Ribosome recycling factor, RRF
APT_00600	SSF64005	Undecaprenyl diphosphate synthase
APT_00602	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00602	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APT_00602	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
APT_00603	SSF50156	PDZ domain-like
APT_00605	SSF111384	OmpH-like
APT_00606	SSF51161	Trimeric LpxA-like enzymes
APT_00607	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
APT_00608	SSF51161	Trimeric LpxA-like enzymes
APT_00610	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
APT_00613	SSF54211	Ribosomal protein S5 domain 2-like
APT_00615	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00616	SSF53633	Carbamate kinase-like
APT_00617	SSF51161	Trimeric LpxA-like enzymes
APT_00618	SSF53187	Zn-dependent exopeptidases
APT_00618	SSF55031	Bacterial exopeptidase dimerisation domain
APT_00620	SSF55120	Pseudouridine synthase
APT_00621	SSF50486	FMT C-terminal domain-like
APT_00621	SSF53328	Formyltransferase
APT_00622	SSF56420	Peptide deformylase
APT_00623	SSF49764	HSP20-like chaperones
APT_00625	SSF69754	Ribosome binding protein Y (YfiA homologue)
APT_00627	SSF141673	MOSC N-terminal domain-like
APT_00627	SSF50800	PK beta-barrel domain-like
APT_00628	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00631	SSF53697	SIS domain
APT_00631	SSF54631	CBS-domain pair
APT_00632	SSF53098	Ribonuclease H-like
APT_00633	SSF55315	L30e-like
APT_00633	SSF75217	alpha/beta knot
APT_00635	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00636	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00637	SSF52374	Nucleotidylyl transferase
APT_00637	SSF53613	Ribokinase-like
APT_00638	SSF48208	Six-hairpin glycosidases
APT_00639	SSF48024	N-terminal domain of DnaB helicase
APT_00639	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00641	SSF50182	Sm-like ribonucleoproteins
APT_00641	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
APT_00641	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
APT_00643	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00645	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00646	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00646	SSF54211	Ribosomal protein S5 domain 2-like
APT_00652	SSF51730	FAD-linked oxidoreductase
APT_00652	SSF53720	ALDH-like
APT_00652	SSF81935	N-terminal domain of bifunctional PutA protein
APT_00653	SSF46785	"Winged helix" DNA-binding domain
APT_00653	SSF48008	GntR ligand-binding domain-like
APT_00655	SSF56801	Acetyl-CoA synthetase-like
APT_00659	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00661	SSF89028	Cobalamin adenosyltransferase-like
APT_00664	SSF55103	FAD-linked oxidases, C-terminal domain
APT_00664	SSF56176	FAD-binding/transporter-associated domain-like
APT_00666	SSF55821	YrdC/RibB
APT_00667	SSF56655	Carbohydrate phosphatase
APT_00668	SSF52949	Macro domain-like
APT_00668	SSF53187	Zn-dependent exopeptidases
APT_00669	SSF102400	DNA polymerase III chi subunit
APT_00670	SSF51430	NAD(P)-linked oxidoreductase
APT_00671	SSF50156	PDZ domain-like
APT_00671	SSF50494	Trypsin-like serine proteases
APT_00672	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00674	SSF118352	HSP33 redox switch-like
APT_00674	SSF64397	Hsp33 domain
APT_00677	SSF53671	Aspartate/ornithine carbamoyltransferase
APT_00678	SSF53383	PLP-dependent transferases
APT_00680	SSF54001	Cysteine proteinases
APT_00682	SSF53639	AraD/HMP-PK domain-like
APT_00683	SSF51182	RmlC-like cupins
APT_00684	SSF56784	HAD-like
APT_00685	SSF52374	Nucleotidylyl transferase
APT_00685	SSF82114	Riboflavin kinase-like
APT_00686	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APT_00686	SSF50677	ValRS/IleRS/LeuRS editing domain
APT_00686	SSF52374	Nucleotidylyl transferase
APT_00689	SSF118116	DNA mismatch repair protein MutL
APT_00689	SSF54211	Ribosomal protein S5 domain 2-like
APT_00689	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00691	SSF103481	Multidrug resistance efflux transporter EmrE
APT_00693	SSF54211	Ribosomal protein S5 domain 2-like
APT_00693	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00693	SSF56719	Type II DNA topoisomerase
APT_00696	SSF46785	"Winged helix" DNA-binding domain
APT_00697	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APT_00698	SSF103088	OmpA-like
APT_00698	SSF56925	OMPA-like
APT_00700	SSF50156	PDZ domain-like
APT_00700	SSF52096	ClpP/crotonase
APT_00701	SSF50249	Nucleic acid-binding proteins
APT_00702	SSF56712	Prokaryotic type I DNA topoisomerase
APT_00702	SSF57783	Zinc beta-ribbon
APT_00703	SSF102405	MCP/YpsA-like
APT_00705	SSF51338	Composite domain of metallo-dependent hydrolases
APT_00705	SSF51556	Metallo-dependent hydrolases
APT_00706	SSF53671	Aspartate/ornithine carbamoyltransferase
APT_00707	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
APT_00707	SSF52374	Nucleotidylyl transferase
APT_00709	SSF69118	AhpD-like
APT_00710	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00711	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_00712	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
APT_00712	SSF51230	Single hybrid motif
APT_00712	SSF52777	CoA-dependent acyltransferases
APT_00713	SSF51230	Single hybrid motif
APT_00713	SSF51905	FAD/NAD(P)-binding domain
APT_00713	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
APT_00715	SSF158634	RPA2825-like
APT_00716	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00716	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
APT_00718	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
APT_00721	SSF56281	Metallo-hydrolase/oxidoreductase
APT_00722	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00727	SSF143243	Nqo5-like
APT_00727	SSF56762	HydB/Nqo4-like
APT_00728	SSF56770	HydA/Nqo6-like
APT_00731	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
APT_00731	SSF50447	Translation proteins
APT_00731	SSF55186	ThrRS/AlaRS common domain
APT_00731	SSF55681	Class II aaRS and biotin synthetases
APT_00733	SSF103088	OmpA-like
APT_00733	SSF56925	OMPA-like
APT_00734	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00734	SSF56796	Dehydroquinate synthase-like
APT_00736	SSF56349	DNA breaking-rejoining enzymes
APT_00737	SSF52096	ClpP/crotonase
APT_00738	SSF53218	Molybdenum cofactor biosynthesis proteins
APT_00739	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
APT_00739	SSF52374	Nucleotidylyl transferase
APT_00742	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00743	SSF53067	Actin-like ATPase domain
APT_00744	SSF53850	Periplasmic binding protein-like II
APT_00744	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
APT_00745	SSF69618	HemD-like
APT_00746	SSF54611	SecB-like
APT_00747	SSF53254	Phosphoglycerate mutase-like
APT_00748	SSF54427	NTF2-like
APT_00749	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00750	SSF46626	Cytochrome c
APT_00751	SSF160443	SMR domain-like
APT_00753	SSF102886	Coproporphyrinogen III oxidase
APT_00754	SSF81342	Transmembrane di-heme cytochromes
APT_00754	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
APT_00755	SSF46626	Cytochrome c
APT_00756	SSF53167	Purine and uridine phosphorylases
APT_00760	SSF55469	FMN-dependent nitroreductase-like
APT_00761	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00762	SSF53720	ALDH-like
APT_00763	SSF46689	Homeodomain-like
APT_00763	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_00764	SSF51182	RmlC-like cupins
APT_00766	SSF53955	Lysozyme-like
APT_00768	SSF53955	Lysozyme-like
APT_00770	SSF53955	Lysozyme-like
APT_00773	SSF56349	DNA breaking-rejoining enzymes
APT_00775	SSF143100	TTHA1013/TTHA0281-like
APT_00775	SSF47598	Ribbon-helix-helix
APT_00777	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_00782	SSF56349	DNA breaking-rejoining enzymes
APT_00788	SSF47413	lambda repressor-like DNA-binding domains
APT_00796	SSF46689	Homeodomain-like
APT_00799	SSF57783	Zinc beta-ribbon
APT_00803	SSF51621	Phosphoenolpyruvate/pyruvate domain
APT_00804	SSF51395	FMN-linked oxidoreductases
APT_00805	SSF46785	"Winged helix" DNA-binding domain
APT_00806	SSF50129	GroES-like
APT_00806	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00807	SSF50494	Trypsin-like serine proteases
APT_00808	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00810	SSF50621	Alanine racemase C-terminal domain-like
APT_00810	SSF51419	PLP-binding barrel
APT_00811	SSF48557	L-aspartase-like
APT_00813	SSF53187	Zn-dependent exopeptidases
APT_00814	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00814	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
APT_00815	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00816	SSF53098	Ribonuclease H-like
APT_00818	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_00820	SSF51366	Ribulose-phoshate binding barrel
APT_00821	SSF48013	NusB-like
APT_00821	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00822	SSF53328	Formyltransferase
APT_00823	SSF55326	PurM N-terminal domain-like
APT_00823	SSF56042	PurM C-terminal domain-like
APT_00824	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00825	SSF140356	PPK N-terminal domain-like
APT_00825	SSF143724	PHP14-like
APT_00825	SSF56024	Phospholipase D/nuclease
APT_00826	SSF109604	HD-domain/PDEase-like
APT_00826	SSF53067	Actin-like ATPase domain
APT_00827	SSF103190	Sensory domain-like
APT_00827	SSF55073	Nucleotide cyclase
APT_00827	SSF55781	GAF domain-like
APT_00829	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00831	SSF48452	TPR-like
APT_00832	SSF49785	Galactose-binding domain-like
APT_00833	SSF81296	E set domains
APT_00833	SSF81324	Voltage-gated potassium channels
APT_00836	SSF140804	YidB-like
APT_00838	SSF48452	TPR-like
APT_00840	SSF52833	Thioredoxin-like
APT_00842	SSF82093	Heme chaperone CcmE
APT_00845	SSF54909	Dimeric alpha+beta barrel
APT_00846	SSF88697	PUA domain-like
APT_00847	SSF52799	(Phosphotyrosine protein) phosphatases II
APT_00851	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00851	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
APT_00852	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_00854	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
APT_00857	SSF81301	Nucleotidyltransferase
APT_00857	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
APT_00858	SSF52833	Thioredoxin-like
APT_00860	SSF103473	MFS general substrate transporter
APT_00863	SSF52172	CheY-like
APT_00864	SSF158472	HAMP domain-like
APT_00864	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_00864	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00865	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
APT_00865	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
APT_00865	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_00866	SSF111369	HlyD-like secretion proteins
APT_00867	SSF56954	Outer membrane efflux proteins (OEP)
APT_00868	SSF46906	Ribosomal protein L11, C-terminal domain
APT_00868	SSF54747	Ribosomal L11/L12e N-terminal domain
APT_00869	SSF56808	Ribosomal protein L1
APT_00870	SSF160369	Ribosomal protein L10-like
APT_00871	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
APT_00871	SSF54736	ClpS-like
APT_00872	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
APT_00873	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
APT_00874	SSF50249	Nucleic acid-binding proteins
APT_00875	SSF47973	Ribosomal protein S7
APT_00876	SSF50447	Translation proteins
APT_00876	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
APT_00876	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00877	SSF54999	Ribosomal protein S10
APT_00878	SSF50447	Translation proteins
APT_00879	SSF52166	Ribosomal protein L4
APT_00880	SSF54189	Ribosomal proteins S24e, L23 and L15e
APT_00881	SSF50104	Translation proteins SH3-like domain
APT_00881	SSF50249	Nucleic acid-binding proteins
APT_00882	SSF54570	Ribosomal protein S19
APT_00883	SSF54843	Ribosomal protein L22
APT_00884	SSF54814	Prokaryotic type KH domain (KH-domain type II)
APT_00884	SSF54821	Ribosomal protein S3 C-terminal domain
APT_00885	SSF54686	Ribosomal protein L16p/L10e
APT_00886	SSF46561	Ribosomal protein L29 (L29p)
APT_00887	SSF50249	Nucleic acid-binding proteins
APT_00888	SSF50193	Ribosomal protein L14
APT_00889	SSF50104	Translation proteins SH3-like domain
APT_00890	SSF55282	RL5-like
APT_00891	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
APT_00892	SSF56047	Ribosomal protein S8
APT_00893	SSF56053	Ribosomal protein L6
APT_00894	SSF53137	Translational machinery components
APT_00895	SSF54211	Ribosomal protein S5 domain 2-like
APT_00895	SSF54768	dsRNA-binding domain-like
APT_00896	SSF55129	Ribosomal protein L30p/L7e
APT_00897	SSF52080	Ribosomal proteins L15p and L18e
APT_00898	SSF103491	Preprotein translocase SecY subunit
APT_00899	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00899	SSF57774	Microbial and mitochondrial ADK, insert "zinc finger" domain
APT_00900	SSF46946	S13-like H2TH domain
APT_00901	SSF53137	Translational machinery components
APT_00902	SSF47789	C-terminal domain of RNA polymerase alpha subunit
APT_00902	SSF55257	RBP11-like subunits of RNA polymerase
APT_00902	SSF56553	Insert subdomain of RNA polymerase alpha subunit
APT_00903	SSF64263	Prokaryotic ribosomal protein L17
APT_00904	SSF53850	Periplasmic binding protein-like II
APT_00905	SSF161098	MetI-like
APT_00906	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00909	SSF56954	Outer membrane efflux proteins (OEP)
APT_00910	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
APT_00910	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
APT_00910	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_00911	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
APT_00911	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
APT_00911	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_00912	SSF111369	HlyD-like secretion proteins
APT_00913	SSF103473	MFS general substrate transporter
APT_00914	SSF69047	Hypothetical protein YjbJ
APT_00915	SSF53098	Ribonuclease H-like
APT_00916	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00917	SSF48403	Ankyrin repeat
APT_00918	SSF52317	Class I glutamine amidotransferase-like
APT_00919	SSF52317	Class I glutamine amidotransferase-like
APT_00920	SSF53300	vWA-like
APT_00921	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00923	SSF81301	Nucleotidyltransferase
APT_00923	SSF81891	Poly A polymerase C-terminal region-like
APT_00924	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00924	SSF90123	ABC transporter transmembrane region
APT_00925	SSF111369	HlyD-like secretion proteins
APT_00926	SSF103473	MFS general substrate transporter
APT_00927	SSF55811	Nudix
APT_00928	SSF88713	Glycoside hydrolase/deacetylase
APT_00929	SSF50156	PDZ domain-like
APT_00929	SSF52096	ClpP/crotonase
APT_00930	SSF51261	Duplicated hybrid motif
APT_00931	SSF53649	Alkaline phosphatase-like
APT_00931	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
APT_00932	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APT_00932	SSF55021	ACT-like
APT_00933	SSF46557	GreA transcript cleavage protein, N-terminal domain
APT_00933	SSF54534	FKBP-like
APT_00934	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
APT_00934	SSF52335	Methylglyoxal synthase-like
APT_00934	SSF52440	PreATP-grasp domain
APT_00934	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_00935	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
APT_00935	SSF52317	Class I glutamine amidotransferase-like
APT_00936	SSF89095	GatB/YqeY motif
APT_00937	SSF56731	DNA primase core
APT_00937	SSF57783	Zinc beta-ribbon
APT_00938	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
APT_00938	SSF88946	Sigma2 domain of RNA polymerase sigma factors
APT_00939	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_00940	SSF54995	Ribosomal protein S6
APT_00941	SSF46911	Ribosomal protein S18
APT_00942	SSF55653	Ribosomal protein L9 C-domain
APT_00942	SSF55658	L9 N-domain-like
APT_00943	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00944	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00945	SSF109998	Triger factor/SurA peptide-binding domain-like
APT_00945	SSF54534	FKBP-like
APT_00949	SSF56935	Porins
APT_00950	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00950	SSF90123	ABC transporter transmembrane region
APT_00951	SSF46785	"Winged helix" DNA-binding domain
APT_00951	SSF48008	GntR ligand-binding domain-like
APT_00952	SSF55229	Cell division protein MinE topological specificity domain
APT_00953	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00954	SSF63848	Cell-division inhibitor MinC, C-terminal domain
APT_00955	SSF47616	GST C-terminal domain-like
APT_00955	SSF52833	Thioredoxin-like
APT_00956	SSF160996	HI0933 insert domain-like
APT_00956	SSF51905	FAD/NAD(P)-binding domain
APT_00957	SSF53790	Tetrapyrrole methylase
APT_00958	SSF53822	Periplasmic binding protein-like I
APT_00959	SSF48452	TPR-like
APT_00959	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_00960	SSF141259	CarD-like
APT_00962	SSF53474	alpha/beta-Hydrolases
APT_00965	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00968	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_00968	SSF52172	CheY-like
APT_00968	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00969	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_00969	SSF52172	CheY-like
APT_00969	SSF55785	PYP-like sensor domain (PAS domain)
APT_00969	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_00970	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APT_00971	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00972	SSF82649	SufE/NifU
APT_00973	SSF56003	Molybdenum cofactor-binding domain
APT_00974	SSF47741	CO dehydrogenase ISP C-domain like
APT_00974	SSF54292	2Fe-2S ferredoxin-like
APT_00975	SSF46626	Cytochrome c
APT_00976	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_00976	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_00977	SSF143034	L35p-like
APT_00978	SSF74731	Ribosomal protein L20
APT_00979	SSF46589	tRNA-binding arm
APT_00979	SSF55681	Class II aaRS and biotin synthetases
APT_00980	SSF46955	Putative DNA-binding domain
APT_00980	SSF50249	Nucleic acid-binding proteins
APT_00980	SSF54991	Anticodon-binding domain of PheRS
APT_00980	SSF55681	Class II aaRS and biotin synthetases
APT_00980	SSF56037	PheT/TilS domain
APT_00981	SSF53850	Periplasmic binding protein-like II
APT_00982	SSF53850	Periplasmic binding protein-like II
APT_00984	SSF51206	cAMP-binding domain-like
APT_00986	SSF55174	Alpha-L RNA-binding motif
APT_00987	SSF50447	Translation proteins
APT_00987	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00987	SSF54980	EF-G C-terminal domain-like
APT_00988	SSF55811	Nudix
APT_00989	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
APT_00990	SSF53092	Creatinase/prolidase N-terminal domain
APT_00990	SSF55920	Creatinase/aminopeptidase
APT_00991	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_00992	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_00993	SSF47781	RuvA domain 2-like
APT_00994	SSF102712	JAB1/MPN domain
APT_00995	SSF51246	Rudiment single hybrid motif
APT_00995	SSF52440	PreATP-grasp domain
APT_00995	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_00996	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
APT_01000	SSF49764	HSP20-like chaperones
APT_01002	SSF143800	L28p-like
APT_01004	SSF81330	Gated mechanosensitive channel
APT_01006	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_01007	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_01008	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01008	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APT_01009	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
APT_01009	SSF51998	PFL-like glycyl radical enzymes
APT_01010	SSF47240	Ferritin-like
APT_01011	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01012	SSF48576	Terpenoid synthases
APT_01013	SSF53681	Aspartate/glutamate racemase
APT_01014	SSF53271	PRTase-like
APT_01016	SSF48256	Citrate synthase
APT_01017	SSF53254	Phosphoglycerate mutase-like
APT_01018	SSF48600	Chorismate mutase II
APT_01019	SSF56300	Metallo-dependent phosphatases
APT_01020	SSF100950	NagB/RpiA/CoA transferase-like
APT_01022	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01022	SSF57997	Tropomyosin
APT_01022	SSF75553	Smc hinge domain
APT_01023	SSF52833	Thioredoxin-like
APT_01024	SSF54631	CBS-domain pair
APT_01024	SSF56176	FAD-binding/transporter-associated domain-like
APT_01025	SSF55486	Metalloproteases ("zincins"), catalytic domain
APT_01026	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01027	SSF102114	Radical SAM enzymes
APT_01028	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
APT_01031	SSF56219	DNase I-like
APT_01032	SSF51556	Metallo-dependent hydrolases
APT_01033	SSF46600	C-terminal UvrC-binding domain of UvrB
APT_01033	SSF47781	RuvA domain 2-like
APT_01033	SSF82771	GIY-YIG endonuclease
APT_01036	SSF54285	MoaD/ThiS
APT_01037	SSF54690	Molybdopterin synthase subunit MoaE
APT_01038	SSF53383	PLP-dependent transferases
APT_01039	SSF53383	PLP-dependent transferases
APT_01040	SSF53474	alpha/beta-Hydrolases
APT_01041	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01041	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01042	SSF46785	"Winged helix" DNA-binding domain
APT_01042	SSF51306	LexA/Signal peptidase
APT_01043	SSF53218	Molybdenum cofactor biosynthesis proteins
APT_01043	SSF63867	MoeA C-terminal domain-like
APT_01043	SSF63882	MoeA N-terminal region -like
APT_01044	SSF57829	Zn-binding ribosomal proteins
APT_01046	SSF51604	Enolase C-terminal domain-like
APT_01046	SSF54826	Enolase N-terminal domain-like
APT_01048	SSF51971	Nucleotide-binding domain
APT_01048	SSF54373	FAD-linked reductases, C-terminal domain
APT_01049	SSF54285	MoaD/ThiS
APT_01050	SSF110399	ThiG-like
APT_01051	SSF51391	Thiamin phosphate synthase
APT_01052	SSF50249	Nucleic acid-binding proteins
APT_01052	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01053	SSF109910	YgfY-like
APT_01054	SSF141259	CarD-like
APT_01054	SSF143517	TRCF domain-like
APT_01054	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01057	SSF53383	PLP-dependent transferases
APT_01058	SSF53300	vWA-like
APT_01059	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01060	SSF46565	Chaperone J-domain
APT_01061	SSF82657	BolA-like
APT_01062	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
APT_01063	SSF55681	Class II aaRS and biotin synthetases
APT_01064	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01065	SSF53738	Phosphoglucomutase, first 3 domains
APT_01065	SSF55957	Phosphoglucomutase, C-terminal domain
APT_01066	SSF102114	Radical SAM enzymes
APT_01067	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01068	SSF53271	PRTase-like
APT_01069	SSF52833	Thioredoxin-like
APT_01072	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
APT_01073	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01074	SSF53633	Carbamate kinase-like
APT_01074	SSF55021	ACT-like
APT_01075	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
APT_01076	SSF47413	lambda repressor-like DNA-binding domains
APT_01077	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
APT_01077	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
APT_01078	SSF52954	Class II aaRS ABD-related
APT_01078	SSF55681	Class II aaRS and biotin synthetases
APT_01079	SSF75620	Release factor
APT_01081	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01086	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_01088	SSF53955	Lysozyme-like
APT_01089	SSF110997	Sporulation related repeat
APT_01090	SSF56601	beta-lactamase/transpeptidase-like
APT_01090	SSF69189	Penicillin-binding protein associated domain
APT_01091	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01092	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01093	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APT_01093	SSF52374	Nucleotidylyl transferase
APT_01094	SSF51556	Metallo-dependent hydrolases
APT_01095	SSF56281	Metallo-hydrolase/oxidoreductase
APT_01096	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_01097	SSF50475	FMN-binding split barrel
APT_01098	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01099	SSF103263	Chorismate synthase, AroC
APT_01100	SSF82784	OsmC-like
APT_01101	SSF51905	FAD/NAD(P)-binding domain
APT_01102	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
APT_01103	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_01104	SSF102114	Radical SAM enzymes
APT_01105	SSF102114	Radical SAM enzymes
APT_01107	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_01108	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_01109	SSF50447	Translation proteins
APT_01109	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
APT_01109	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01111	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
APT_01111	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
APT_01113	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01114	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01116	SSF56655	Carbohydrate phosphatase
APT_01119	SSF53901	Thiolase-like
APT_01120	SSF47336	ACP-like
APT_01122	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01123	SSF52151	FabD/lysophospholipase-like
APT_01123	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
APT_01125	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01126	SSF53850	Periplasmic binding protein-like II
APT_01129	SSF50249	Nucleic acid-binding proteins
APT_01130	SSF74982	Small protein B (SmpB)
APT_01131	SSF51569	Aldolase
APT_01132	SSF53850	Periplasmic binding protein-like II
APT_01132	SSF55021	ACT-like
APT_01133	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01134	SSF46626	Cytochrome c
APT_01135	SSF56655	Carbohydrate phosphatase
APT_01136	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01136	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
APT_01136	SSF55021	ACT-like
APT_01137	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01137	SSF54211	Ribosomal protein S5 domain 2-like
APT_01138	SSF53383	PLP-dependent transferases
APT_01139	SSF52821	Rhodanese/Cell cycle control phosphatase
APT_01141	SSF56219	DNase I-like
APT_01142	SSF56024	Phospholipase D/nuclease
APT_01143	SSF52980	Restriction endonuclease-like
APT_01145	SSF52833	Thioredoxin-like
APT_01146	SSF82657	BolA-like
APT_01147	SSF55326	PurM N-terminal domain-like
APT_01147	SSF56042	PurM C-terminal domain-like
APT_01148	SSF52317	Class I glutamine amidotransferase-like
APT_01150	SSF82697	PurS-like
APT_01151	SSF56104	SAICAR synthase-like
APT_01152	SSF48557	L-aspartase-like
APT_01154	SSF48435	Bacterial muramidases
APT_01154	SSF53955	Lysozyme-like
APT_01155	SSF101307	YutG-like
APT_01156	SSF142433	CinA-like
APT_01159	SSF55961	Bet v1-like
APT_01160	SSF102114	Radical SAM enzymes
APT_01161	SSF51905	FAD/NAD(P)-binding domain
APT_01161	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
APT_01162	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
APT_01162	SSF51230	Single hybrid motif
APT_01162	SSF52777	CoA-dependent acyltransferases
APT_01163	SSF51230	Single hybrid motif
APT_01163	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_01163	SSF52922	TK C-terminal domain-like
APT_01164	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_01165	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
APT_01166	SSF51366	Ribulose-phoshate binding barrel
APT_01167	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
APT_01167	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
APT_01168	SSF52317	Class I glutamine amidotransferase-like
APT_01169	SSF56322	ADC synthase
APT_01170	SSF109998	Triger factor/SurA peptide-binding domain-like
APT_01170	SSF54534	FKBP-like
APT_01171	SSF51351	Triosephosphate isomerase (TIM)
APT_01173	SSF52317	Class I glutamine amidotransferase-like
APT_01173	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01174	SSF51569	Aldolase
APT_01175	SSF54211	Ribosomal protein S5 domain 2-like
APT_01175	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_01175	SSF56719	Type II DNA topoisomerase
APT_01176	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01177	SSF55979	DNA clamp
APT_01178	SSF48295	TrpR-like
APT_01178	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01180	SSF46992	Ribosomal protein S20
APT_01181	SSF46946	S13-like H2TH domain
APT_01181	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
APT_01181	SSF81624	N-terminal domain of MutM-like DNA repair proteins
APT_01182	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01183	SSF102645	CoaB-like
APT_01183	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
APT_01184	SSF51283	dUTPase-like
APT_01185	SSF161098	MetI-like
APT_01186	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01187	SSF55068	Peptide methionine sulfoxide reductase
APT_01188	SSF46589	tRNA-binding arm
APT_01188	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APT_01188	SSF50677	ValRS/IleRS/LeuRS editing domain
APT_01188	SSF52374	Nucleotidylyl transferase
APT_01190	SSF56954	Outer membrane efflux proteins (OEP)
APT_01191	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01192	SSF56349	DNA breaking-rejoining enzymes
APT_01201	SSF53955	Lysozyme-like
APT_01207	SSF56349	DNA breaking-rejoining enzymes
APT_01215	SSF47413	lambda repressor-like DNA-binding domains
APT_01219	SSF46955	Putative DNA-binding domain
APT_01220	SSF81301	Nucleotidyltransferase
APT_01222	SSF51294	Hedgehog/intein (Hint) domain
APT_01225	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01226	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_01227	SSF55326	PurM N-terminal domain-like
APT_01227	SSF56042	PurM C-terminal domain-like
APT_01228	SSF48013	NusB-like
APT_01231	SSF110087	DR1885-like metal-binding protein
APT_01232	SSF53067	Actin-like ATPase domain
APT_01233	SSF81338	Aquaporin-like
APT_01234	SSF51905	FAD/NAD(P)-binding domain
APT_01234	SSF54373	FAD-linked reductases, C-terminal domain
APT_01235	SSF100950	NagB/RpiA/CoA transferase-like
APT_01235	SSF46785	"Winged helix" DNA-binding domain
APT_01236	SSF46785	"Winged helix" DNA-binding domain
APT_01236	SSF47819	HRDC-like
APT_01236	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01237	SSF103088	OmpA-like
APT_01238	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01238	SSF90123	ABC transporter transmembrane region
APT_01239	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01239	SSF90123	ABC transporter transmembrane region
APT_01240	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_01242	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
APT_01242	SSF88946	Sigma2 domain of RNA polymerase sigma factors
APT_01243	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
APT_01243	SSF88946	Sigma2 domain of RNA polymerase sigma factors
APT_01244	SSF52172	CheY-like
APT_01245	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01246	SSF48208	Six-hairpin glycosidases
APT_01247	SSF50129	GroES-like
APT_01247	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01248	SSF57783	Zinc beta-ribbon
APT_01248	SSF82057	Prokaryotic SH3-related domain
APT_01250	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_01250	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01251	SSF54506	Diaminopimelate epimerase-like
APT_01252	SSF51338	Composite domain of metallo-dependent hydrolases
APT_01252	SSF51556	Metallo-dependent hydrolases
APT_01253	SSF53850	Periplasmic binding protein-like II
APT_01255	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01256	SSF161098	MetI-like
APT_01257	SSF51197	Clavaminate synthase-like
APT_01258	SSF51338	Composite domain of metallo-dependent hydrolases
APT_01258	SSF51556	Metallo-dependent hydrolases
APT_01259	SSF56935	Porins
APT_01260	SSF53187	Zn-dependent exopeptidases
APT_01260	SSF55031	Bacterial exopeptidase dimerisation domain
APT_01261	SSF53383	PLP-dependent transferases
APT_01262	SSF54427	NTF2-like
APT_01264	SSF75304	Amidase signature (AS) enzymes
APT_01266	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
APT_01266	SSF56003	Molybdenum cofactor-binding domain
APT_01267	SSF47741	CO dehydrogenase ISP C-domain like
APT_01267	SSF54292	2Fe-2S ferredoxin-like
APT_01267	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
APT_01267	SSF56176	FAD-binding/transporter-associated domain-like
APT_01269	SSF49472	Transthyretin (synonym: prealbumin)
APT_01270	SSF158694	UraD-Like
APT_01271	SSF88713	Glycoside hydrolase/deacetylase
APT_01272	SSF51905	FAD/NAD(P)-binding domain
APT_01273	SSF46785	"Winged helix" DNA-binding domain
APT_01273	SSF53850	Periplasmic binding protein-like II
APT_01274	SSF51338	Composite domain of metallo-dependent hydrolases
APT_01274	SSF51556	Metallo-dependent hydrolases
APT_01275	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APT_01279	SSF74653	TolA/TonB C-terminal domain
APT_01280	SSF52833	Thioredoxin-like
APT_01281	SSF111369	HlyD-like secretion proteins
APT_01282	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01284	SSF56954	Outer membrane efflux proteins (OEP)
APT_01285	SSF46785	"Winged helix" DNA-binding domain
APT_01285	SSF53850	Periplasmic binding protein-like II
APT_01288	SSF48239	Terpenoid cyclases/Protein prenyltransferases
APT_01289	SSF46689	Homeodomain-like
APT_01290	SSF46689	Homeodomain-like
APT_01290	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_01291	SSF53474	alpha/beta-Hydrolases
APT_01293	SSF53720	ALDH-like
APT_01294	SSF51395	FMN-linked oxidoreductases
APT_01295	SSF46785	"Winged helix" DNA-binding domain
APT_01296	SSF52317	Class I glutamine amidotransferase-like
APT_01296	SSF56634	Heme-dependent catalase-like
APT_01297	SSF110916	Peptidyl-tRNA hydrolase domain-like
APT_01299	SSF48208	Six-hairpin glycosidases
APT_01299	SSF74650	Galactose mutarotase-like
APT_01300	SSF51338	Composite domain of metallo-dependent hydrolases
APT_01300	SSF51556	Metallo-dependent hydrolases
APT_01301	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_01302	SSF53613	Ribokinase-like
APT_01305	SSF56935	Porins
APT_01306	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01306	SSF90123	ABC transporter transmembrane region
APT_01307	SSF117396	TM1631-like
APT_01308	SSF143081	BB1717-like
APT_01309	SSF53067	Actin-like ATPase domain
APT_01310	SSF56954	Outer membrane efflux proteins (OEP)
APT_01311	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
APT_01311	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
APT_01311	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_01312	SSF111369	HlyD-like secretion proteins
APT_01313	SSF103481	Multidrug resistance efflux transporter EmrE
APT_01314	SSF46689	Homeodomain-like
APT_01317	SSF103473	MFS general substrate transporter
APT_01318	SSF51556	Metallo-dependent hydrolases
APT_01319	SSF51294	Hedgehog/intein (Hint) domain
APT_01320	SSF54427	NTF2-like
APT_01321	SSF46689	Homeodomain-like
APT_01321	SSF51182	RmlC-like cupins
APT_01322	SSF55826	YbaK/ProRS associated domain
APT_01323	SSF103473	MFS general substrate transporter
APT_01324	SSF46785	"Winged helix" DNA-binding domain
APT_01325	SSF74653	TolA/TonB C-terminal domain
APT_01330	SSF56935	Porins
APT_01332	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
APT_01332	SSF88946	Sigma2 domain of RNA polymerase sigma factors
APT_01333	SSF56935	Porins
APT_01335	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
APT_01335	SSF88946	Sigma2 domain of RNA polymerase sigma factors
APT_01336	SSF53850	Periplasmic binding protein-like II
APT_01337	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01338	SSF161098	MetI-like
APT_01339	SSF53474	alpha/beta-Hydrolases
APT_01340	SSF51197	Clavaminate synthase-like
APT_01341	SSF56935	Porins
APT_01342	SSF103473	MFS general substrate transporter
APT_01344	SSF103473	MFS general substrate transporter
APT_01345	SSF46785	"Winged helix" DNA-binding domain
APT_01345	SSF53850	Periplasmic binding protein-like II
APT_01346	SSF143975	IlvD/EDD N-terminal domain-like
APT_01346	SSF52016	LeuD/IlvD-like
APT_01347	SSF51621	Phosphoenolpyruvate/pyruvate domain
APT_01348	SSF51338	Composite domain of metallo-dependent hydrolases
APT_01348	SSF51556	Metallo-dependent hydrolases
APT_01349	SSF46785	"Winged helix" DNA-binding domain
APT_01349	SSF53850	Periplasmic binding protein-like II
APT_01350	SSF56796	Dehydroquinate synthase-like
APT_01351	SSF103473	MFS general substrate transporter
APT_01352	SSF53720	ALDH-like
APT_01353	SSF53850	Periplasmic binding protein-like II
APT_01354	SSF161098	MetI-like
APT_01355	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01356	SSF47598	Ribbon-helix-helix
APT_01356	SSF55021	ACT-like
APT_01359	SSF160467	PH0987 N-terminal domain-like
APT_01359	SSF50891	Cyclophilin-like
APT_01359	SSF51230	Single hybrid motif
APT_01359	SSF51246	Rudiment single hybrid motif
APT_01359	SSF52440	PreATP-grasp domain
APT_01359	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_01360	SSF75304	Amidase signature (AS) enzymes
APT_01361	SSF53474	alpha/beta-Hydrolases
APT_01362	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01362	SSF52980	Restriction endonuclease-like
APT_01363	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APT_01363	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APT_01364	SSF56935	Porins
APT_01365	SSF48613	Heme oxygenase-like
APT_01366	SSF54909	Dimeric alpha+beta barrel
APT_01367	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01368	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
APT_01369	SSF53807	"Helical backbone" metal receptor
APT_01370	SSF54909	Dimeric alpha+beta barrel
APT_01371	SSF46785	"Winged helix" DNA-binding domain
APT_01376	SSF101898	NHL repeat
APT_01377	SSF53474	alpha/beta-Hydrolases
APT_01378	SSF111352	Ammonium transporter
APT_01380	SSF49998	Amine oxidase catalytic domain
APT_01380	SSF54416	Amine oxidase N-terminal region
APT_01383	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01384	SSF51395	FMN-linked oxidoreductases
APT_01385	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01386	SSF46689	Homeodomain-like
APT_01387	SSF56300	Metallo-dependent phosphatases
APT_01388	SSF46689	Homeodomain-like
APT_01388	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_01389	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
APT_01389	SSF56003	Molybdenum cofactor-binding domain
APT_01390	SSF47741	CO dehydrogenase ISP C-domain like
APT_01390	SSF54292	2Fe-2S ferredoxin-like
APT_01390	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
APT_01390	SSF56176	FAD-binding/transporter-associated domain-like
APT_01391	SSF51294	Hedgehog/intein (Hint) domain
APT_01392	SSF51294	Hedgehog/intein (Hint) domain
APT_01393	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01393	SSF90123	ABC transporter transmembrane region
APT_01394	SSF111369	HlyD-like secretion proteins
APT_01398	SSF103473	MFS general substrate transporter
APT_01399	SSF51679	Bacterial luciferase-like
APT_01400	SSF51679	Bacterial luciferase-like
APT_01401	SSF56935	Porins
APT_01403	SSF50475	FMN-binding split barrel
APT_01404	SSF103473	MFS general substrate transporter
APT_01405	SSF51905	FAD/NAD(P)-binding domain
APT_01406	SSF51679	Bacterial luciferase-like
APT_01407	SSF51679	Bacterial luciferase-like
APT_01408	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APT_01408	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APT_01409	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APT_01410	SSF55469	FMN-dependent nitroreductase-like
APT_01412	SSF56935	Porins
APT_01413	SSF116734	DNA methylase specificity domain
APT_01414	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01415	SSF116734	DNA methylase specificity domain
APT_01416	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01419	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01420	SSF56801	Acetyl-CoA synthetase-like
APT_01421	SSF47336	ACP-like
APT_01421	SSF50129	GroES-like
APT_01421	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01421	SSF52151	FabD/lysophospholipase-like
APT_01421	SSF53901	Thiolase-like
APT_01421	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
APT_01422	SSF56801	Acetyl-CoA synthetase-like
APT_01423	SSF51294	Hedgehog/intein (Hint) domain
APT_01427	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01429	SSF56112	Protein kinase-like (PK-like)
APT_01430	SSF116734	DNA methylase specificity domain
APT_01431	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01432	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01433	SSF47413	lambda repressor-like DNA-binding domains
APT_01436	SSF140931	Fic-like
APT_01438	SSF53955	Lysozyme-like
APT_01440	SSF51306	LexA/Signal peptidase
APT_01443	SSF53041	Resolvase-like
APT_01445	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01446	SSF118215	Proton glutamate symport protein
APT_01447	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01448	SSF47616	GST C-terminal domain-like
APT_01448	SSF52833	Thioredoxin-like
APT_01449	SSF103473	MFS general substrate transporter
APT_01451	SSF111342	CbiD-like
APT_01452	SSF53790	Tetrapyrrole methylase
APT_01453	SSF159664	CobE/GbiG C-terminal domain-like
APT_01454	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01454	SSF53790	Tetrapyrrole methylase
APT_01456	SSF53790	Tetrapyrrole methylase
APT_01457	SSF53790	Tetrapyrrole methylase
APT_01458	SSF63965	Precorrin-8X methylmutase CbiC/CobH
APT_01459	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
APT_01459	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
APT_01460	SSF54909	Dimeric alpha+beta barrel
APT_01461	SSF48557	L-aspartase-like
APT_01463	SSF46689	Homeodomain-like
APT_01463	SSF55781	GAF domain-like
APT_01465	SSF50998	Quinoprotein alcohol dehydrogenase-like
APT_01475	SSF53067	Actin-like ATPase domain
APT_01476	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
APT_01477	SSF51395	FMN-linked oxidoreductases
APT_01478	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_01478	SSF52922	TK C-terminal domain-like
APT_01478	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
APT_01478	SSF54862	4Fe-4S ferredoxins
APT_01479	SSF46548	alpha-helical ferredoxin
APT_01479	SSF51971	Nucleotide-binding domain
APT_01479	SSF54862	4Fe-4S ferredoxins
APT_01480	SSF47473	EF-hand
APT_01481	SSF46689	Homeodomain-like
APT_01483	SSF47616	GST C-terminal domain-like
APT_01483	SSF52833	Thioredoxin-like
APT_01484	SSF53927	Cytidine deaminase-like
APT_01485	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01486	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01487	SSF53218	Molybdenum cofactor biosynthesis proteins
APT_01487	SSF63867	MoeA C-terminal domain-like
APT_01487	SSF63882	MoeA N-terminal region -like
APT_01488	SSF144020	FdhE-like
APT_01489	SSF81342	Transmembrane di-heme cytochromes
APT_01490	SSF54862	4Fe-4S ferredoxins
APT_01491	SSF50692	ADC-like
APT_01491	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
APT_01492	SSF53067	Actin-like ATPase domain
APT_01493	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01494	SSF53067	Actin-like ATPase domain
APT_01495	SSF64307	SirA-like
APT_01496	SSF116842	XseB-like
APT_01497	SSF48576	Terpenoid synthases
APT_01498	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_01498	SSF52922	TK C-terminal domain-like
APT_01499	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01499	SSF55174	Alpha-L RNA-binding motif
APT_01501	SSF102114	Radical SAM enzymes
APT_01502	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_01502	SSF69864	Argininosuccinate synthetase, C-terminal domain
APT_01503	SSF54534	FKBP-like
APT_01504	SSF46626	Cytochrome c
APT_01505	SSF52374	Nucleotidylyl transferase
APT_01507	SSF46894	C-terminal effector domain of the bipartite response regulators
APT_01507	SSF52172	CheY-like
APT_01509	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01510	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01511	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
APT_01511	SSF54631	CBS-domain pair
APT_01512	SSF53850	Periplasmic binding protein-like II
APT_01513	SSF161098	MetI-like
APT_01514	SSF161098	MetI-like
APT_01515	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01516	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01517	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
APT_01518	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
APT_01519	SSF55895	Ribonuclease Rh-like
APT_01522	SSF56935	Porins
APT_01525	SSF53474	alpha/beta-Hydrolases
APT_01526	SSF103473	MFS general substrate transporter
APT_01528	SSF63380	Riboflavin synthase domain-like
APT_01529	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01530	SSF46785	"Winged helix" DNA-binding domain
APT_01531	SSF56935	Porins
APT_01533	SSF111369	HlyD-like secretion proteins
APT_01535	SSF56954	Outer membrane efflux proteins (OEP)
APT_01536	SSF102114	Radical SAM enzymes
APT_01538	SSF56935	Porins
APT_01539	SSF50182	Sm-like ribonucleoproteins
APT_01539	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
APT_01539	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
APT_01540	SSF50952	Soluble quinoprotein glucose dehydrogenase
APT_01545	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01545	SSF90123	ABC transporter transmembrane region
APT_01546	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01546	SSF90123	ABC transporter transmembrane region
APT_01549	SSF56935	Porins
APT_01550	SSF81901	HCP-like
APT_01553	SSF53774	Glutaminase/Asparaginase
APT_01554	SSF53383	PLP-dependent transferases
APT_01555	SSF116726	TrkA C-terminal domain-like
APT_01556	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01557	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01558	SSF102588	LmbE-like
APT_01559	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APT_01559	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APT_01562	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01563	SSF46785	"Winged helix" DNA-binding domain
APT_01563	SSF53850	Periplasmic binding protein-like II
APT_01564	SSF51294	Hedgehog/intein (Hint) domain
APT_01565	SSF56935	Porins
APT_01566	SSF50129	GroES-like
APT_01566	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01567	SSF54427	NTF2-like
APT_01568	SSF47240	Ferritin-like
APT_01569	SSF53254	Phosphoglycerate mutase-like
APT_01571	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_01573	SSF89796	CoA-transferase family III (CaiB/BaiF)
APT_01574	SSF52467	DHS-like NAD/FAD-binding domain
APT_01574	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_01575	SSF89796	CoA-transferase family III (CaiB/BaiF)
APT_01577	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01578	SSF46689	Homeodomain-like
APT_01578	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_01579	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01580	SSF55961	Bet v1-like
APT_01582	SSF103473	MFS general substrate transporter
APT_01583	SSF53738	Phosphoglucomutase, first 3 domains
APT_01583	SSF55957	Phosphoglucomutase, C-terminal domain
APT_01584	SSF51161	Trimeric LpxA-like enzymes
APT_01585	SSF49899	Concanavalin A-like lectins/glucanases
APT_01586	SSF51294	Hedgehog/intein (Hint) domain
APT_01588	SSF46785	"Winged helix" DNA-binding domain
APT_01588	SSF53850	Periplasmic binding protein-like II
APT_01589	SSF56935	Porins
APT_01593	SSF56935	Porins
APT_01595	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
APT_01595	SSF88946	Sigma2 domain of RNA polymerase sigma factors
APT_01599	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_01599	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_01600	SSF52172	CheY-like
APT_01601	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
APT_01601	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
APT_01601	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_01602	SSF111369	HlyD-like secretion proteins
APT_01603	SSF56954	Outer membrane efflux proteins (OEP)
APT_01610	SSF46785	"Winged helix" DNA-binding domain
APT_01611	SSF51182	RmlC-like cupins
APT_01612	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01613	SSF51182	RmlC-like cupins
APT_01614	SSF103473	MFS general substrate transporter
APT_01615	SSF56935	Porins
APT_01616	SSF46689	Homeodomain-like
APT_01617	SSF103473	MFS general substrate transporter
APT_01618	SSF160207	NMB0488-like
APT_01622	SSF88723	PIN domain-like
APT_01627	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01629	SSF52980	Restriction endonuclease-like
APT_01630	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_01636	SSF54001	Cysteine proteinases
APT_01637	SSF55298	YjgF-like
APT_01638	SSF46955	Putative DNA-binding domain
APT_01641	SSF46689	Homeodomain-like
APT_01642	SSF53098	Ribonuclease H-like
APT_01643	SSF54495	UBC-like
APT_01643	SSF69572	Activating enzymes of the ubiquitin-like proteins
APT_01647	SSF53098	Ribonuclease H-like
APT_01648	SSF46689	Homeodomain-like
APT_01653	SSF103481	Multidrug resistance efflux transporter EmrE
APT_01654	SSF46689	Homeodomain-like
APT_01654	SSF51215	Regulatory protein AraC
APT_01655	SSF46689	Homeodomain-like
APT_01655	SSF52317	Class I glutamine amidotransferase-like
APT_01656	SSF100950	NagB/RpiA/CoA transferase-like
APT_01659	SSF103473	MFS general substrate transporter
APT_01665	SSF46689	Homeodomain-like
APT_01666	SSF53098	Ribonuclease H-like
APT_01671	SSF46689	Homeodomain-like
APT_01675	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01676	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01681	SSF47413	lambda repressor-like DNA-binding domains
APT_01681	SSF51306	LexA/Signal peptidase
APT_01689	SSF46689	Homeodomain-like
APT_01690	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01692	SSF52266	SGNH hydrolase
APT_01693	SSF160207	NMB0488-like
APT_01703	SSF56801	Acetyl-CoA synthetase-like
APT_01704	SSF47336	ACP-like
APT_01705	SSF53383	PLP-dependent transferases
APT_01707	SSF111331	NAD kinase/diacylglycerol kinase-like
APT_01708	SSF56300	Metallo-dependent phosphatases
APT_01712	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01713	SSF56784	HAD-like
APT_01714	SSF51161	Trimeric LpxA-like enzymes
APT_01714	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01715	SSF53697	SIS domain
APT_01715	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APT_01717	SSF46785	"Winged helix" DNA-binding domain
APT_01717	SSF55781	GAF domain-like
APT_01718	SSF52833	Thioredoxin-like
APT_01719	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01721	SSF52954	Class II aaRS ABD-related
APT_01721	SSF55681	Class II aaRS and biotin synthetases
APT_01722	SSF56281	Metallo-hydrolase/oxidoreductase
APT_01723	SSF53067	Actin-like ATPase domain
APT_01724	SSF55681	Class II aaRS and biotin synthetases
APT_01729	SSF54862	4Fe-4S ferredoxins
APT_01731	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
APT_01731	SSF54292	2Fe-2S ferredoxin-like
APT_01731	SSF54862	4Fe-4S ferredoxins
APT_01732	SSF140490	Nqo1C-terminal domain-like
APT_01732	SSF142019	Nqo1 FMN-binding domain-like
APT_01732	SSF142984	Nqo1 middle domain-like
APT_01733	SSF52833	Thioredoxin-like
APT_01734	SSF56762	HydB/Nqo4-like
APT_01735	SSF143243	Nqo5-like
APT_01736	SSF56770	HydA/Nqo6-like
APT_01738	SSF47729	IHF-like DNA-binding proteins
APT_01739	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01739	SSF54211	Ribosomal protein S5 domain 2-like
APT_01739	SSF88697	PUA domain-like
APT_01740	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01740	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
APT_01741	SSF52096	ClpP/crotonase
APT_01742	SSF102735	Trigger factor ribosome-binding domain
APT_01742	SSF109998	Triger factor/SurA peptide-binding domain-like
APT_01742	SSF54534	FKBP-like
APT_01743	SSF53613	Ribokinase-like
APT_01743	SSF64153	YjeF N-terminal domain-like
APT_01745	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01746	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01747	SSF89360	HesB-like domain
APT_01748	SSF117916	Fe-S cluster assembly (FSCA) domain-like
APT_01749	SSF82649	SufE/NifU
APT_01750	SSF53383	PLP-dependent transferases
APT_01751	SSF101960	Stabilizer of iron transporter SufD
APT_01752	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01753	SSF101960	Stabilizer of iron transporter SufD
APT_01754	SSF46785	"Winged helix" DNA-binding domain
APT_01756	SSF51621	Phosphoenolpyruvate/pyruvate domain
APT_01757	SSF53474	alpha/beta-Hydrolases
APT_01758	SSF50447	Translation proteins
APT_01758	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01758	SSF54211	Ribosomal protein S5 domain 2-like
APT_01758	SSF54980	EF-G C-terminal domain-like
APT_01759	SSF143800	L28p-like
APT_01761	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01761	SSF90123	ABC transporter transmembrane region
APT_01762	SSF55811	Nudix
APT_01763	SSF109604	HD-domain/PDEase-like
APT_01763	SSF55021	ACT-like
APT_01763	SSF81301	Nucleotidyltransferase
APT_01763	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
APT_01764	SSF48334	DNA repair protein MutS, domain III
APT_01764	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01764	SSF53150	DNA repair protein MutS, domain II
APT_01764	SSF55271	DNA repair protein MutS, domain I
APT_01765	SSF48452	TPR-like
APT_01765	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01766	SSF55486	Metalloproteases ("zincins"), catalytic domain
APT_01767	SSF101898	NHL repeat
APT_01768	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APT_01769	SSF63411	LuxS/MPP-like metallohydrolase
APT_01770	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
APT_01771	SSF54427	NTF2-like
APT_01775	SSF81442	Cytochrome c oxidase subunit I-like
APT_01777	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01779	SSF52440	PreATP-grasp domain
APT_01779	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_01781	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01782	SSF46785	"Winged helix" DNA-binding domain
APT_01782	SSF54909	Dimeric alpha+beta barrel
APT_01783	SSF51905	FAD/NAD(P)-binding domain
APT_01784	SSF46785	"Winged helix" DNA-binding domain
APT_01784	SSF53850	Periplasmic binding protein-like II
APT_01786	SSF47729	IHF-like DNA-binding proteins
APT_01787	SSF52141	Uracil-DNA glycosylase-like
APT_01790	SSF46955	Putative DNA-binding domain
APT_01791	SSF47729	IHF-like DNA-binding proteins
APT_01792	SSF53901	Thiolase-like
APT_01793	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
APT_01794	SSF57829	Zn-binding ribosomal proteins
APT_01797	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_01797	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_01798	SSF46894	C-terminal effector domain of the bipartite response regulators
APT_01798	SSF52172	CheY-like
APT_01799	SSF46785	"Winged helix" DNA-binding domain
APT_01801	SSF56420	Peptide deformylase
APT_01803	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
APT_01804	SSF52016	LeuD/IlvD-like
APT_01805	SSF53732	Aconitase iron-sulfur domain
APT_01806	SSF50104	Translation proteins SH3-like domain
APT_01807	SSF75217	alpha/beta knot
APT_01808	SSF50346	PRC-barrel domain
APT_01808	SSF50447	Translation proteins
APT_01809	SSF54565	Ribosomal protein S16
APT_01810	SSF47364	Domain of the SRP/SRP receptor G-proteins
APT_01810	SSF47446	Signal peptide-binding domain
APT_01810	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01812	SSF160909	ATP12-like
APT_01814	SSF55120	Pseudouridine synthase
APT_01814	SSF55174	Alpha-L RNA-binding motif
APT_01815	SSF48019	post-AAA+ oligomerization domain-like
APT_01815	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01816	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
APT_01818	SSF75217	alpha/beta knot
APT_01818	SSF88697	PUA domain-like
APT_01819	SSF55931	Glutamine synthetase/guanido kinase
APT_01820	SSF103473	MFS general substrate transporter
APT_01822	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01823	SSF50998	Quinoprotein alcohol dehydrogenase-like
APT_01826	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01827	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01828	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_01828	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APT_01829	SSF103025	Folate-binding domain
APT_01830	SSF141734	HisI-like
APT_01831	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01832	SSF52091	SpoIIaa-like
APT_01834	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_01834	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01835	SSF48576	Terpenoid synthases
APT_01836	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
APT_01836	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
APT_01837	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01837	SSF81923	Double Clp-N motif
APT_01838	SSF55811	Nudix
APT_01839	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01840	SSF50182	Sm-like ribonucleoproteins
APT_01841	SSF46689	Homeodomain-like
APT_01841	SSF52172	CheY-like
APT_01841	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01842	SSF158472	HAMP domain-like
APT_01842	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_01842	SSF55785	PYP-like sensor domain (PAS domain)
APT_01842	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_01843	SSF46689	Homeodomain-like
APT_01843	SSF52172	CheY-like
APT_01843	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01844	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_01844	SSF55785	PYP-like sensor domain (PAS domain)
APT_01844	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_01845	SSF51395	FMN-linked oxidoreductases
APT_01846	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01846	SSF69765	IpsF-like
APT_01847	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01848	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01851	SSF51971	Nucleotide-binding domain
APT_01851	SSF54373	FAD-linked reductases, C-terminal domain
APT_01852	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01853	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01855	SSF53271	PRTase-like
APT_01856	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01857	SSF53271	PRTase-like
APT_01860	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_01860	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01860	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
APT_01862	SSF54913	GlnB-like
APT_01863	SSF51161	Trimeric LpxA-like enzymes
APT_01864	SSF51905	FAD/NAD(P)-binding domain
APT_01867	SSF52799	(Phosphotyrosine protein) phosphatases II
APT_01873	SSF50104	Translation proteins SH3-like domain
APT_01873	SSF50249	Nucleic acid-binding proteins
APT_01874	SSF56655	Carbohydrate phosphatase
APT_01875	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01876	SSF50249	Nucleic acid-binding proteins
APT_01877	SSF53474	alpha/beta-Hydrolases
APT_01878	SSF50129	GroES-like
APT_01879	SSF48592	GroEL equatorial domain-like
APT_01879	SSF52029	GroEL apical domain-like
APT_01879	SSF54849	GroEL-intermediate domain like
APT_01880	SSF52266	SGNH hydrolase
APT_01880	SSF56784	HAD-like
APT_01881	SSF56784	HAD-like
APT_01884	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01888	SSF52266	SGNH hydrolase
APT_01891	SSF111352	Ammonium transporter
APT_01893	SSF50630	Acid proteases
APT_01894	SSF53474	alpha/beta-Hydrolases
APT_01895	SSF47823	lambda integrase-like, N-terminal domain
APT_01895	SSF56349	DNA breaking-rejoining enzymes
APT_01896	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01898	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01899	SSF50022	ISP domain
APT_01899	SSF55961	Bet v1-like
APT_01900	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_01900	SSF55811	Nudix
APT_01901	SSF51182	RmlC-like cupins
APT_01901	SSF53448	Nucleotide-diphospho-sugar transferases
APT_01902	SSF53383	PLP-dependent transferases
APT_01903	SSF110069	ApaG-like
APT_01904	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
APT_01905	SSF52317	Class I glutamine amidotransferase-like
APT_01906	SSF53218	Molybdenum cofactor biosynthesis proteins
APT_01909	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01910	SSF56300	Metallo-dependent phosphatases
APT_01913	SSF111369	HlyD-like secretion proteins
APT_01916	SSF51905	FAD/NAD(P)-binding domain
APT_01917	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
APT_01919	SSF52121	Lumazine synthase
APT_01920	SSF142695	RibA-like
APT_01920	SSF55821	YrdC/RibB
APT_01921	SSF63380	Riboflavin synthase domain-like
APT_01922	SSF53597	Dihydrofolate reductase-like
APT_01922	SSF53927	Cytidine deaminase-like
APT_01924	SSF81342	Transmembrane di-heme cytochromes
APT_01924	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
APT_01925	SSF46626	Cytochrome c
APT_01926	SSF50022	ISP domain
APT_01927	SSF52218	Flavoproteins
APT_01933	SSF53474	alpha/beta-Hydrolases
APT_01934	SSF51294	Hedgehog/intein (Hint) domain
APT_01935	SSF141091	L21p-like
APT_01936	SSF110324	Ribosomal L27 protein-like
APT_01937	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01937	SSF82051	Obg GTP-binding protein N-terminal domain
APT_01938	SSF53633	Carbamate kinase-like
APT_01938	SSF88697	PUA domain-like
APT_01941	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01941	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APT_01943	SSF53474	alpha/beta-Hydrolases
APT_01945	SSF89447	AbrB/MazE/MraZ-like
APT_01946	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_01946	SSF81799	Putative methyltransferase TM0872, insert domain
APT_01948	SSF56519	Penicillin binding protein dimerisation domain
APT_01948	SSF56601	beta-lactamase/transpeptidase-like
APT_01949	SSF53244	MurD-like peptide ligases, peptide-binding domain
APT_01949	SSF53623	MurD-like peptide ligases, catalytic domain
APT_01949	SSF63418	MurE/MurF N-terminal domain
APT_01950	SSF53244	MurD-like peptide ligases, peptide-binding domain
APT_01950	SSF53623	MurD-like peptide ligases, catalytic domain
APT_01950	SSF63418	MurE/MurF N-terminal domain
APT_01952	SSF51984	MurCD N-terminal domain
APT_01952	SSF53244	MurD-like peptide ligases, peptide-binding domain
APT_01952	SSF53623	MurD-like peptide ligases, catalytic domain
APT_01954	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01955	SSF51984	MurCD N-terminal domain
APT_01955	SSF53244	MurD-like peptide ligases, peptide-binding domain
APT_01955	SSF53623	MurD-like peptide ligases, catalytic domain
APT_01956	SSF56176	FAD-binding/transporter-associated domain-like
APT_01956	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
APT_01957	SSF52440	PreATP-grasp domain
APT_01957	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_01959	SSF53067	Actin-like ATPase domain
APT_01960	SSF52490	Tubulin nucleotide-binding domain-like
APT_01960	SSF55307	Tubulin C-terminal domain-like
APT_01961	SSF54211	Ribosomal protein S5 domain 2-like
APT_01962	SSF48452	TPR-like
APT_01963	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01964	SSF47781	RuvA domain 2-like
APT_01964	SSF50249	Nucleic acid-binding proteins
APT_01964	SSF52113	BRCT domain
APT_01964	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
APT_01965	SSF51621	Phosphoenolpyruvate/pyruvate domain
APT_01965	SSF52009	Phosphohistidine domain
APT_01965	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_01968	SSF54211	Ribosomal protein S5 domain 2-like
APT_01968	SSF54980	EF-G C-terminal domain-like
APT_01970	SSF51569	Aldolase
APT_01971	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
APT_01971	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
APT_01973	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
APT_01973	SSF52374	Nucleotidylyl transferase
APT_01974	SSF52499	Isochorismatase-like hydrolases
APT_01975	SSF56784	HAD-like
APT_01976	SSF55008	HMA, heavy metal-associated domain
APT_01976	SSF56784	HAD-like
APT_01976	SSF81653	Calcium ATPase, transduction domain A
APT_01976	SSF81665	Calcium ATPase, transmembrane domain M
APT_01978	SSF49503	Cupredoxins
APT_01979	SSF103515	Autotransporter
APT_01980	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_01980	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_01981	SSF55021	ACT-like
APT_01982	SSF52467	DHS-like NAD/FAD-binding domain
APT_01982	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_01983	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01984	SSF56784	HAD-like
APT_01987	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_01988	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01989	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_01990	SSF53187	Zn-dependent exopeptidases
APT_01991	SSF53383	PLP-dependent transferases
APT_01994	SSF51569	Aldolase
APT_01995	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_01996	SSF101904	GyrA/ParC C-terminal domain-like
APT_01996	SSF56719	Type II DNA topoisomerase
APT_01997	SSF57863	ArfGap/RecO-like zinc finger
APT_01998	SSF46934	UBA-like
APT_01998	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
APT_01999	SSF52313	Ribosomal protein S2
APT_02000	SSF50022	ISP domain
APT_02000	SSF55961	Bet v1-like
APT_02002	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
APT_02003	SSF56322	ADC synthase
APT_02004	SSF160975	AF1531-like
APT_02004	SSF89550	PHP domain-like
APT_02005	SSF52374	Nucleotidylyl transferase
APT_02006	SSF55298	YjgF-like
APT_02007	SSF53850	Periplasmic binding protein-like II
APT_02008	SSF53383	PLP-dependent transferases
APT_02009	SSF53383	PLP-dependent transferases
APT_02010	SSF52374	Nucleotidylyl transferase
APT_02013	SSF55008	HMA, heavy metal-associated domain
APT_02014	SSF64288	Chorismate lyase-like
APT_02015	SSF102114	Radical SAM enzymes
APT_02015	SSF52242	Cobalamin (vitamin B12)-binding domain
APT_02016	SSF54919	Nucleoside diphosphate kinase, NDK
APT_02017	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02019	SSF52172	CheY-like
APT_02020	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_02020	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_02022	SSF54364	Translation initiation factor IF3, N-terminal domain
APT_02022	SSF55200	Translation initiation factor IF3, C-terminal domain
APT_02023	SSF52954	Class II aaRS ABD-related
APT_02023	SSF55186	ThrRS/AlaRS common domain
APT_02023	SSF55681	Class II aaRS and biotin synthetases
APT_02023	SSF81271	TGS-like
APT_02024	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02025	SSF48452	TPR-like
APT_02026	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02027	SSF111331	NAD kinase/diacylglycerol kinase-like
APT_02028	SSF103088	OmpA-like
APT_02030	SSF53098	Ribonuclease H-like
APT_02031	SSF56112	Protein kinase-like (PK-like)
APT_02035	SSF56112	Protein kinase-like (PK-like)
APT_02036	SSF55486	Metalloproteases ("zincins"), catalytic domain
APT_02037	SSF51395	FMN-linked oxidoreductases
APT_02037	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APT_02037	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
APT_02038	SSF46548	alpha-helical ferredoxin
APT_02038	SSF51971	Nucleotide-binding domain
APT_02039	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02040	SSF103481	Multidrug resistance efflux transporter EmrE
APT_02041	SSF53187	Zn-dependent exopeptidases
APT_02042	SSF50249	Nucleic acid-binding proteins
APT_02043	SSF53850	Periplasmic binding protein-like II
APT_02044	SSF53720	ALDH-like
APT_02045	SSF50249	Nucleic acid-binding proteins
APT_02046	SSF52972	ITPase-like
APT_02047	SSF50249	Nucleic acid-binding proteins
APT_02048	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
APT_02053	SSF53955	Lysozyme-like
APT_02067	SSF56563	Major capsid protein gp5
APT_02074	SSF56349	DNA breaking-rejoining enzymes
APT_02085	SSF55174	Alpha-L RNA-binding motif
APT_02086	SSF47413	lambda repressor-like DNA-binding domains
APT_02092	SSF47413	lambda repressor-like DNA-binding domains
APT_02097	SSF56349	DNA breaking-rejoining enzymes
APT_02098	SSF46626	Cytochrome c
APT_02100	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02101	SSF53720	ALDH-like
APT_02102	SSF55103	FAD-linked oxidases, C-terminal domain
APT_02102	SSF56176	FAD-binding/transporter-associated domain-like
APT_02104	SSF54001	Cysteine proteinases
APT_02105	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_02107	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
APT_02107	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
APT_02108	SSF142754	NadA-like
APT_02109	SSF46785	"Winged helix" DNA-binding domain
APT_02109	SSF55811	Nudix
APT_02110	SSF46689	Homeodomain-like
APT_02110	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_02111	SSF51905	FAD/NAD(P)-binding domain
APT_02112	SSF53720	ALDH-like
APT_02114	SSF103473	MFS general substrate transporter
APT_02115	SSF143744	GlcG-like
APT_02116	SSF52218	Flavoproteins
APT_02117	SSF51182	RmlC-like cupins
APT_02118	SSF46785	"Winged helix" DNA-binding domain
APT_02118	SSF53850	Periplasmic binding protein-like II
APT_02123	SSF74653	TolA/TonB C-terminal domain
APT_02124	SSF56935	Porins
APT_02125	SSF103473	MFS general substrate transporter
APT_02126	SSF103481	Multidrug resistance efflux transporter EmrE
APT_02127	SSF88713	Glycoside hydrolase/deacetylase
APT_02128	SSF50891	Cyclophilin-like
APT_02129	SSF160467	PH0987 N-terminal domain-like
APT_02129	SSF50891	Cyclophilin-like
APT_02130	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02131	SSF51230	Single hybrid motif
APT_02132	SSF51246	Rudiment single hybrid motif
APT_02132	SSF52440	PreATP-grasp domain
APT_02132	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_02133	SSF51230	Single hybrid motif
APT_02134	SSF53383	PLP-dependent transferases
APT_02135	SSF46785	"Winged helix" DNA-binding domain
APT_02135	SSF53850	Periplasmic binding protein-like II
APT_02136	SSF75304	Amidase signature (AS) enzymes
APT_02137	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02138	SSF51445	(Trans)glycosidases
APT_02139	SSF51445	(Trans)glycosidases
APT_02139	SSF81296	E set domains
APT_02140	SSF51011	Glycosyl hydrolase domain
APT_02140	SSF51445	(Trans)glycosidases
APT_02140	SSF81296	E set domains
APT_02141	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02142	SSF51011	Glycosyl hydrolase domain
APT_02142	SSF51445	(Trans)glycosidases
APT_02142	SSF81296	E set domains
APT_02144	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02145	SSF52467	DHS-like NAD/FAD-binding domain
APT_02145	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_02146	SSF51905	FAD/NAD(P)-binding domain
APT_02147	SSF52833	Thioredoxin-like
APT_02148	SSF56935	Porins
APT_02150	SSF51294	Hedgehog/intein (Hint) domain
APT_02151	SSF53041	Resolvase-like
APT_02155	SSF116734	DNA methylase specificity domain
APT_02156	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_02157	SSF116734	DNA methylase specificity domain
APT_02158	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02161	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02164	SSF47598	Ribbon-helix-helix
APT_02168	SSF55811	Nudix
APT_02169	SSF46785	"Winged helix" DNA-binding domain
APT_02169	SSF53850	Periplasmic binding protein-like II
APT_02172	SSF53474	alpha/beta-Hydrolases
APT_02174	SSF52833	Thioredoxin-like
APT_02175	SSF103481	Multidrug resistance efflux transporter EmrE
APT_02176	SSF46589	tRNA-binding arm
APT_02176	SSF55681	Class II aaRS and biotin synthetases
APT_02179	SSF46785	"Winged helix" DNA-binding domain
APT_02181	SSF110997	Sporulation related repeat
APT_02182	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APT_02182	SSF52374	Nucleotidylyl transferase
APT_02182	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
APT_02183	SSF109604	HD-domain/PDEase-like
APT_02184	SSF89360	HesB-like domain
APT_02185	SSF56219	DNase I-like
APT_02186	SSF53448	Nucleotide-diphospho-sugar transferases
APT_02190	SSF56281	Metallo-hydrolase/oxidoreductase
APT_02191	SSF48613	Heme oxygenase-like
APT_02193	SSF102114	Radical SAM enzymes
APT_02194	SSF47240	Ferritin-like
APT_02195	SSF52096	ClpP/crotonase
APT_02197	SSF53383	PLP-dependent transferases
APT_02198	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02198	SSF55021	ACT-like
APT_02198	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
APT_02199	SSF56655	Carbohydrate phosphatase
APT_02200	SSF64182	DHH phosphoesterases
APT_02201	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
APT_02201	SSF88946	Sigma2 domain of RNA polymerase sigma factors
APT_02202	SSF55120	Pseudouridine synthase
APT_02202	SSF55174	Alpha-L RNA-binding motif
APT_02203	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
APT_02204	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02206	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
APT_02207	SSF47807	5' to 3' exonuclease, C-terminal subdomain
APT_02207	SSF53098	Ribonuclease H-like
APT_02207	SSF56672	DNA/RNA polymerases
APT_02207	SSF88723	PIN domain-like
APT_02208	SSF52833	Thioredoxin-like
APT_02209	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
APT_02210	SSF103473	MFS general substrate transporter
APT_02215	SSF54909	Dimeric alpha+beta barrel
APT_02219	SSF50998	Quinoprotein alcohol dehydrogenase-like
APT_02220	SSF51294	Hedgehog/intein (Hint) domain
APT_02221	SSF55331	Tautomerase/MIF
APT_02222	SSF53383	PLP-dependent transferases
APT_02223	SSF46785	"Winged helix" DNA-binding domain
APT_02223	SSF53383	PLP-dependent transferases
APT_02224	SSF53187	Zn-dependent exopeptidases
APT_02224	SSF55031	Bacterial exopeptidase dimerisation domain
APT_02225	SSF51395	FMN-linked oxidoreductases
APT_02225	SSF54862	4Fe-4S ferredoxins
APT_02226	SSF46548	alpha-helical ferredoxin
APT_02226	SSF51971	Nucleotide-binding domain
APT_02227	SSF56935	Porins
APT_02228	SSF52833	Thioredoxin-like
APT_02229	SSF51338	Composite domain of metallo-dependent hydrolases
APT_02229	SSF51556	Metallo-dependent hydrolases
APT_02231	SSF46689	Homeodomain-like
APT_02231	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_02232	SSF51366	Ribulose-phoshate binding barrel
APT_02233	SSF51366	Ribulose-phoshate binding barrel
APT_02235	SSF54611	SecB-like
APT_02237	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
APT_02238	SSF63892	Pyridoxine 5'-phosphate synthase
APT_02240	SSF53067	Actin-like ATPase domain
APT_02244	SSF51197	Clavaminate synthase-like
APT_02245	SSF56601	beta-lactamase/transpeptidase-like
APT_02246	SSF47413	lambda repressor-like DNA-binding domains
APT_02247	SSF46458	Globin-like
APT_02247	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
APT_02247	SSF63380	Riboflavin synthase domain-like
APT_02248	SSF161098	MetI-like
APT_02249	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02250	SSF53850	Periplasmic binding protein-like II
APT_02251	SSF55103	FAD-linked oxidases, C-terminal domain
APT_02251	SSF56176	FAD-binding/transporter-associated domain-like
APT_02252	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02252	SSF53790	Tetrapyrrole methylase
APT_02252	SSF75615	Siroheme synthase middle domains-like
APT_02253	SSF53474	alpha/beta-Hydrolases
APT_02254	SSF46785	"Winged helix" DNA-binding domain
APT_02255	SSF75304	Amidase signature (AS) enzymes
APT_02256	SSF50475	FMN-binding split barrel
APT_02257	SSF53639	AraD/HMP-PK domain-like
APT_02258	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_02258	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02259	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
APT_02259	SSF54292	2Fe-2S ferredoxin-like
APT_02259	SSF63380	Riboflavin synthase domain-like
APT_02260	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02261	SSF54427	NTF2-like
APT_02262	SSF50022	ISP domain
APT_02262	SSF55961	Bet v1-like
APT_02264	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
APT_02264	SSF56645	Acyl-CoA dehydrogenase NM domain-like
APT_02266	SSF53720	ALDH-like
APT_02267	SSF46626	Cytochrome c
APT_02267	SSF50998	Quinoprotein alcohol dehydrogenase-like
APT_02268	SSF103473	MFS general substrate transporter
APT_02269	SSF54427	NTF2-like
APT_02270	SSF46785	"Winged helix" DNA-binding domain
APT_02270	SSF53850	Periplasmic binding protein-like II
APT_02271	SSF161098	MetI-like
APT_02272	SSF161098	MetI-like
APT_02273	SSF53850	Periplasmic binding protein-like II
APT_02274	SSF50331	MOP-like
APT_02274	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02275	SSF53720	ALDH-like
APT_02278	SSF51197	Clavaminate synthase-like
APT_02280	SSF81901	HCP-like
APT_02281	SSF56935	Porins
APT_02284	SSF74653	TolA/TonB C-terminal domain
APT_02286	SSF46785	"Winged helix" DNA-binding domain
APT_02286	SSF53850	Periplasmic binding protein-like II
APT_02287	SSF50022	ISP domain
APT_02287	SSF55961	Bet v1-like
APT_02289	SSF118215	Proton glutamate symport protein
APT_02293	SSF51905	FAD/NAD(P)-binding domain
APT_02293	SSF54373	FAD-linked reductases, C-terminal domain
APT_02294	SSF46626	Cytochrome c
APT_02295	SSF53720	ALDH-like
APT_02296	SSF103473	MFS general substrate transporter
APT_02297	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02298	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
APT_02300	SSF53383	PLP-dependent transferases
APT_02302	SSF55469	FMN-dependent nitroreductase-like
APT_02303	SSF52317	Class I glutamine amidotransferase-like
APT_02303	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02304	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02305	SSF53254	Phosphoglycerate mutase-like
APT_02306	SSF52317	Class I glutamine amidotransferase-like
APT_02306	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02308	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02308	SSF90002	Hypothetical protein YjiA, C-terminal domain
APT_02309	SSF52833	Thioredoxin-like
APT_02311	SSF46785	"Winged helix" DNA-binding domain
APT_02314	SSF52096	ClpP/crotonase
APT_02315	SSF50475	FMN-binding split barrel
APT_02317	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
APT_02318	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02319	SSF53807	"Helical backbone" metal receptor
APT_02320	SSF46785	"Winged helix" DNA-binding domain
APT_02323	SSF100950	NagB/RpiA/CoA transferase-like
APT_02324	SSF55826	YbaK/ProRS associated domain
APT_02326	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APT_02327	SSF52317	Class I glutamine amidotransferase-like
APT_02327	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_02327	SSF54810	GMP synthetase C-terminal dimerisation domain
APT_02329	SSF103473	MFS general substrate transporter
APT_02330	SSF53955	Lysozyme-like
APT_02332	SSF54909	Dimeric alpha+beta barrel
APT_02333	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02335	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_02336	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
APT_02338	SSF53955	Lysozyme-like
APT_02340	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02341	SSF103481	Multidrug resistance efflux transporter EmrE
APT_02342	SSF143865	CorA soluble domain-like
APT_02342	SSF144083	Magnesium transport protein CorA, transmembrane region
APT_02344	SSF53383	PLP-dependent transferases
APT_02345	SSF48403	Ankyrin repeat
APT_02346	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_02346	SSF52922	TK C-terminal domain-like
APT_02347	SSF51569	Aldolase
APT_02347	SSF53697	SIS domain
APT_02348	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_02348	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02349	SSF56784	HAD-like
APT_02350	SSF100950	NagB/RpiA/CoA transferase-like
APT_02351	SSF100950	NagB/RpiA/CoA transferase-like
APT_02351	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
APT_02352	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02355	SSF53807	"Helical backbone" metal receptor
APT_02356	SSF54631	CBS-domain pair
APT_02356	SSF81340	Clc chloride channel
APT_02357	SSF50129	GroES-like
APT_02357	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02358	SSF51419	PLP-binding barrel
APT_02360	SSF102114	Radical SAM enzymes
APT_02363	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02364	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02366	SSF48371	ARM repeat
APT_02367	SSF53822	Periplasmic binding protein-like I
APT_02368	SSF47384	Homodimeric domain of signal transducing histidine kinase
APT_02368	SSF52172	CheY-like
APT_02368	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
APT_02369	SSF46894	C-terminal effector domain of the bipartite response regulators
APT_02369	SSF52172	CheY-like
APT_02371	SSF56935	Porins
APT_02372	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02374	SSF69287	Urease metallochaperone UreE, N-terminal domain
APT_02374	SSF69737	Urease metallochaperone UreE, C-terminal domain
APT_02375	SSF51338	Composite domain of metallo-dependent hydrolases
APT_02375	SSF51556	Metallo-dependent hydrolases
APT_02376	SSF51278	Urease, beta-subunit
APT_02377	SSF54111	Urease, gamma-subunit
APT_02380	SSF52467	DHS-like NAD/FAD-binding domain
APT_02380	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
APT_02381	SSF53254	Phosphoglycerate mutase-like
APT_02382	SSF53474	alpha/beta-Hydrolases
APT_02384	SSF47240	Ferritin-like
APT_02385	SSF52833	Thioredoxin-like
APT_02386	SSF54197	HIT-like
APT_02387	SSF48150	DNA-glycosylase
APT_02388	SSF46785	"Winged helix" DNA-binding domain
APT_02389	SSF52833	Thioredoxin-like
APT_02390	SSF56281	Metallo-hydrolase/oxidoreductase
APT_02392	SSF52091	SpoIIaa-like
APT_02393	SSF52833	Thioredoxin-like
APT_02394	SSF51182	RmlC-like cupins
APT_02395	SSF56954	Outer membrane efflux proteins (OEP)
APT_02396	SSF111369	HlyD-like secretion proteins
APT_02397	SSF103473	MFS general substrate transporter
APT_02398	SSF46785	"Winged helix" DNA-binding domain
APT_02398	SSF53850	Periplasmic binding protein-like II
APT_02400	SSF103473	MFS general substrate transporter
APT_02402	SSF53474	alpha/beta-Hydrolases
APT_02403	SSF52499	Isochorismatase-like hydrolases
APT_02404	SSF144052	Thermophilic metalloprotease-like
APT_02405	SSF46626	Cytochrome c
APT_02405	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
APT_02405	SSF56003	Molybdenum cofactor-binding domain
APT_02406	SSF47741	CO dehydrogenase ISP C-domain like
APT_02406	SSF54292	2Fe-2S ferredoxin-like
APT_02407	SSF51905	FAD/NAD(P)-binding domain
APT_02407	SSF54373	FAD-linked reductases, C-terminal domain
APT_02408	SSF46785	"Winged helix" DNA-binding domain
APT_02410	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02412	SSF56281	Metallo-hydrolase/oxidoreductase
APT_02415	SSF53448	Nucleotide-diphospho-sugar transferases
APT_02416	SSF55298	YjgF-like
APT_02417	SSF54001	Cysteine proteinases
APT_02418	SSF53383	PLP-dependent transferases
APT_02419	SSF51230	Single hybrid motif
APT_02420	SSF101790	Aminomethyltransferase beta-barrel domain
APT_02420	SSF103025	Folate-binding domain
APT_02422	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_02423	SSF56276	S-adenosylmethionine decarboxylase
APT_02424	SSF48452	TPR-like
APT_02425	SSF46785	"Winged helix" DNA-binding domain
APT_02425	SSF53850	Periplasmic binding protein-like II
APT_02426	SSF50891	Cyclophilin-like
APT_02427	SSF52374	Nucleotidylyl transferase
APT_02428	SSF101904	GyrA/ParC C-terminal domain-like
APT_02428	SSF56719	Type II DNA topoisomerase
APT_02430	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
APT_02431	SSF50249	Nucleic acid-binding proteins
APT_02431	SSF54211	Ribosomal protein S5 domain 2-like
APT_02431	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
APT_02431	SSF55666	Ribonuclease PH domain 2-like
APT_02432	SSF47060	S15/NS1 RNA-binding domain
APT_02433	SSF55120	Pseudouridine synthase
APT_02435	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02437	SSF159594	XCC0632-like
APT_02438	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02440	SSF48452	TPR-like
APT_02440	SSF53448	Nucleotide-diphospho-sugar transferases
APT_02440	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02441	SSF81901	HCP-like
APT_02442	SSF111369	HlyD-like secretion proteins
APT_02443	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02443	SSF90123	ABC transporter transmembrane region
APT_02445	SSF47644	Methionine synthase domain
APT_02445	SSF51717	Dihydropteroate synthetase-like
APT_02445	SSF52242	Cobalamin (vitamin B12)-binding domain
APT_02445	SSF56507	Methionine synthase activation domain-like
APT_02445	SSF82282	Homocysteine S-methyltransferase
APT_02448	SSF53271	PRTase-like
APT_02448	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
APT_02449	SSF159594	XCC0632-like
APT_02453	SSF53448	Nucleotide-diphospho-sugar transferases
APT_02456	SSF81333	F1F0 ATP synthase subunit C
APT_02457	SSF81336	F1F0 ATP synthase subunit A
APT_02460	SSF47364	Domain of the SRP/SRP receptor G-proteins
APT_02460	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02461	SSF102114	Radical SAM enzymes
APT_02462	SSF54506	Diaminopimelate epimerase-like
APT_02463	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
APT_02465	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02466	SSF58113	Apolipoprotein A-I
APT_02467	SSF53474	alpha/beta-Hydrolases
APT_02468	SSF54211	Ribosomal protein S5 domain 2-like
APT_02469	SSF52161	Ribosomal protein L13
APT_02471	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02472	SSF109755	PhoU-like
APT_02473	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02474	SSF161098	MetI-like
APT_02475	SSF161098	MetI-like
APT_02476	SSF143975	IlvD/EDD N-terminal domain-like
APT_02476	SSF52016	LeuD/IlvD-like
APT_02479	SSF50129	GroES-like
APT_02479	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02481	SSF50156	PDZ domain-like
APT_02481	SSF50494	Trypsin-like serine proteases
APT_02483	SSF52266	SGNH hydrolase
APT_02485	SSF117916	Fe-S cluster assembly (FSCA) domain-like
APT_02485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02488	SSF69796	Thymidylate synthase-complementing protein Thy1
APT_02489	SSF101738	SspB-like
APT_02490	SSF117457	FumA C-terminal domain-like
APT_02491	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
APT_02494	SSF51905	FAD/NAD(P)-binding domain
APT_02494	SSF54373	FAD-linked reductases, C-terminal domain
APT_02495	SSF50621	Alanine racemase C-terminal domain-like
APT_02495	SSF51419	PLP-binding barrel
APT_02496	SSF46785	"Winged helix" DNA-binding domain
APT_02496	SSF54909	Dimeric alpha+beta barrel
APT_02497	SSF89919	Ribosome-binding factor A, RbfA
APT_02498	SSF50447	Translation proteins
APT_02498	SSF52156	Initiation factor IF2/eIF5b, domain 3
APT_02498	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02499	SSF55315	L30e-like
APT_02499	SSF64376	YlxR-like
APT_02500	SSF47794	Rad51 N-terminal domain-like
APT_02500	SSF50249	Nucleic acid-binding proteins
APT_02500	SSF54814	Prokaryotic type KH domain (KH-domain type II)
APT_02500	SSF69705	Transcription factor NusA, N-terminal domain
APT_02501	SSF74942	YhbC-like, C-terminal domain
APT_02501	SSF75420	YhbC-like, N-terminal domain
APT_02503	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02505	SSF46785	"Winged helix" DNA-binding domain
APT_02505	SSF53850	Periplasmic binding protein-like II
APT_02506	SSF161098	MetI-like
APT_02506	SSF53850	Periplasmic binding protein-like II
APT_02507	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02508	SSF52016	LeuD/IlvD-like
APT_02508	SSF53732	Aconitase iron-sulfur domain
APT_02509	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02512	SSF50621	Alanine racemase C-terminal domain-like
APT_02512	SSF51419	PLP-binding barrel
APT_02514	SSF50685	Barwin-like endoglucanases
APT_02515	SSF52304	Type II 3-dehydroquinate dehydratase
APT_02516	SSF51230	Single hybrid motif
APT_02517	SSF51246	Rudiment single hybrid motif
APT_02517	SSF52440	PreATP-grasp domain
APT_02517	SSF56059	Glutathione synthetase ATP-binding domain-like
APT_02518	SSF103473	MFS general substrate transporter
APT_02521	SSF49503	Cupredoxins
APT_02528	SSF46785	"Winged helix" DNA-binding domain
APT_02528	SSF53850	Periplasmic binding protein-like II
APT_02529	SSF53383	PLP-dependent transferases
APT_02530	SSF118375	Synuclein
APT_02531	SSF53098	Ribonuclease H-like
APT_02532	SSF141000	Glu-tRNAGln amidotransferase C subunit
APT_02533	SSF75304	Amidase signature (AS) enzymes
APT_02534	SSF55931	Glutamine synthetase/guanido kinase
APT_02534	SSF89095	GatB/YqeY motif
APT_02535	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02535	SSF90123	ABC transporter transmembrane region
APT_02536	SSF48150	DNA-glycosylase
APT_02537	SSF53800	Chelatase
APT_02538	SSF48150	DNA-glycosylase
APT_02538	SSF55811	Nudix
APT_02541	SSF53955	Lysozyme-like
APT_02543	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APT_02543	SSF50677	ValRS/IleRS/LeuRS editing domain
APT_02543	SSF52374	Nucleotidylyl transferase
APT_02545	SSF48019	post-AAA+ oligomerization domain-like
APT_02545	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02547	SSF56954	Outer membrane efflux proteins (OEP)
APT_02548	SSF46689	Homeodomain-like
APT_02548	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_02549	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_02549	SSF52467	DHS-like NAD/FAD-binding domain
APT_02550	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_02551	SSF51905	FAD/NAD(P)-binding domain
APT_02551	SSF54373	FAD-linked reductases, C-terminal domain
APT_02551	SSF54862	4Fe-4S ferredoxins
APT_02553	SSF102114	Radical SAM enzymes
APT_02554	SSF56925	OMPA-like
APT_02555	SSF46785	"Winged helix" DNA-binding domain
APT_02555	SSF51206	cAMP-binding domain-like
APT_02556	SSF50156	PDZ domain-like
APT_02556	SSF50494	Trypsin-like serine proteases
APT_02557	SSF53927	Cytidine deaminase-like
APT_02559	SSF52317	Class I glutamine amidotransferase-like
APT_02560	SSF55120	Pseudouridine synthase
APT_02560	SSF55174	Alpha-L RNA-binding motif
APT_02561	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_02562	SSF50249	Nucleic acid-binding proteins
APT_02564	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
APT_02564	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
APT_02565	SSF56349	DNA breaking-rejoining enzymes
APT_02567	SSF46689	Homeodomain-like
APT_02567	SSF53041	Resolvase-like
APT_02568	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02569	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02571	SSF52374	Nucleotidylyl transferase
APT_02571	SSF55174	Alpha-L RNA-binding motif
APT_02572	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
APT_02573	SSF53254	Phosphoglycerate mutase-like
APT_02574	SSF53383	PLP-dependent transferases
APT_02575	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02576	SSF53448	Nucleotide-diphospho-sugar transferases
APT_02577	SSF51182	RmlC-like cupins
APT_02578	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02579	SSF53448	Nucleotide-diphospho-sugar transferases
APT_02580	SSF46785	"Winged helix" DNA-binding domain
APT_02580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02581	SSF55120	Pseudouridine synthase
APT_02582	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02583	SSF47616	GST C-terminal domain-like
APT_02583	SSF52833	Thioredoxin-like
APT_02584	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_02585	SSF54292	2Fe-2S ferredoxin-like
APT_02586	SSF53383	PLP-dependent transferases
APT_02587	SSF53383	PLP-dependent transferases
APT_02589	SSF53474	alpha/beta-Hydrolases
APT_02590	SSF75217	alpha/beta knot
APT_02591	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
APT_02591	SSF52374	Nucleotidylyl transferase
APT_02592	SSF53244	MurD-like peptide ligases, peptide-binding domain
APT_02592	SSF53623	MurD-like peptide ligases, catalytic domain
APT_02593	SSF52096	ClpP/crotonase
APT_02594	SSF52833	Thioredoxin-like
APT_02595	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02596	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02597	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02598	SSF52172	CheY-like
APT_02599	SSF53738	Phosphoglucomutase, first 3 domains
APT_02599	SSF55957	Phosphoglucomutase, C-terminal domain
APT_02600	SSF51717	Dihydropteroate synthetase-like
APT_02601	SSF140990	FtsH protease domain-like
APT_02601	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02602	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_02603	SSF48452	TPR-like
APT_02604	SSF103088	OmpA-like
APT_02605	SSF52964	TolB, N-terminal domain
APT_02605	SSF69304	Tricorn protease N-terminal domain
APT_02609	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
APT_02610	SSF46785	"Winged helix" DNA-binding domain
APT_02610	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02611	SSF46929	DNA helicase RuvA subunit, C-terminal domain
APT_02611	SSF47781	RuvA domain 2-like
APT_02611	SSF50249	Nucleic acid-binding proteins
APT_02612	SSF53098	Ribonuclease H-like
APT_02613	SSF75625	YebC-like
APT_02614	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02614	SSF81767	Pre-protein crosslinking domain of SecA
APT_02614	SSF81886	Helical scaffold and wing domains of SecA
APT_02615	SSF109998	Triger factor/SurA peptide-binding domain-like
APT_02615	SSF54534	FKBP-like
APT_02616	SSF56266	DmpA/ArgJ-like
APT_02618	SSF50182	Sm-like ribonucleoproteins
APT_02618	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
APT_02618	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
APT_02622	SSF46565	Chaperone J-domain
APT_02622	SSF49493	HSP40/DnaJ peptide-binding domain
APT_02626	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
APT_02626	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_02628	SSF103473	MFS general substrate transporter
APT_02629	SSF47729	IHF-like DNA-binding proteins
APT_02631	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02632	SSF51120	beta-Roll
APT_02633	SSF53448	Nucleotide-diphospho-sugar transferases
APT_02633	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_02634	SSF52402	Adenine nucleotide alpha hydrolases-like
APT_02634	SSF56317	Carbon-nitrogen hydrolase
APT_02635	SSF54211	Ribosomal protein S5 domain 2-like
APT_02636	SSF52317	Class I glutamine amidotransferase-like
APT_02637	SSF51366	Ribulose-phoshate binding barrel
APT_02637	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_02638	SSF51366	Ribulose-phoshate binding barrel
APT_02639	SSF101386	all-alpha NTP pyrophosphatases
APT_02640	SSF54197	HIT-like
APT_02641	SSF55469	FMN-dependent nitroreductase-like
APT_02642	SSF51905	FAD/NAD(P)-binding domain
APT_02646	SSF47616	GST C-terminal domain-like
APT_02646	SSF52833	Thioredoxin-like
APT_02647	SSF110849	ParB/Sulfiredoxin
APT_02648	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02649	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_02650	SSF51905	FAD/NAD(P)-binding domain
APT_02651	SSF116878	TrmE connector domain
APT_02651	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_02652	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
APT_02652	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
APT_02656	SSF102405	MCP/YpsA-like
APT_02657	SSF103473	MFS general substrate transporter
APT_02658	SSF55811	Nudix
APT_02660	SSF56784	HAD-like
APT_02661	SSF51726	UROD/MetE-like
APT_02662	SSF52972	ITPase-like
APT_10003	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10004	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10004	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
APT_10005	SSF109709	KorB DNA-binding domain-like
APT_10005	SSF110849	ParB/Sulfiredoxin
APT_10006	SSF47413	lambda repressor-like DNA-binding domains
APT_10019	SSF50249	Nucleic acid-binding proteins
APT_10022	SSF89447	AbrB/MazE/MraZ-like
APT_10023	SSF88723	PIN domain-like
APT_10028	SSF53955	Lysozyme-like
APT_10033	SSF47729	IHF-like DNA-binding proteins
APT_10034	SSF46689	Homeodomain-like
APT_10034	SSF53041	Resolvase-like
APT_10035	SSF51294	Hedgehog/intein (Hint) domain
APT_10037	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10037	SSF55464	Origin of replication-binding domain, RBD-like
APT_10046	SSF51294	Hedgehog/intein (Hint) domain
APT_10047	SSF46689	Homeodomain-like
APT_10047	SSF53041	Resolvase-like
APT_10049	SSF56024	Phospholipase D/nuclease
APT_10055	SSF89447	AbrB/MazE/MraZ-like
APT_10058	SSF141066	ICP-like
APT_10059	SSF143120	YefM-like
APT_10060	SSF56935	Porins
APT_10062	SSF74653	TolA/TonB C-terminal domain
APT_10064	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
APT_10065	SSF46689	Homeodomain-like
APT_10067	SSF53098	Ribonuclease H-like
APT_10068	SSF53098	Ribonuclease H-like
APT_10069	SSF52833	Thioredoxin-like
APT_10071	SSF56935	Porins
APT_10074	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10074	SSF90123	ABC transporter transmembrane region
APT_10075	SSF52954	Class II aaRS ABD-related
APT_10075	SSF55186	ThrRS/AlaRS common domain
APT_10075	SSF55681	Class II aaRS and biotin synthetases
APT_10076	SSF46785	"Winged helix" DNA-binding domain
APT_10078	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
APT_10079	SSF141734	HisI-like
APT_10080	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10081	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_10084	SSF140931	Fic-like
APT_10090	SSF46785	"Winged helix" DNA-binding domain
APT_10093	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10094	SSF50610	mu transposase, C-terminal domain
APT_10094	SSF53098	Ribonuclease H-like
APT_10095	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10095	SSF89550	PHP domain-like
APT_10096	SSF53041	Resolvase-like
APT_10097	SSF48150	DNA-glycosylase
APT_10098	SSF51197	Clavaminate synthase-like
APT_10101	SSF46689	Homeodomain-like
APT_10101	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
APT_10101	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
APT_10101	SSF57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)
APT_10102	SSF54427	NTF2-like
APT_10103	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
APT_10104	SSF46785	"Winged helix" DNA-binding domain
APT_10104	SSF53850	Periplasmic binding protein-like II
APT_10105	SSF51430	NAD(P)-linked oxidoreductase
APT_10106	SSF51430	NAD(P)-linked oxidoreductase
APT_10108	SSF50129	GroES-like
APT_10108	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_10109	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
APT_10110	SSF53474	alpha/beta-Hydrolases
APT_10112	SSF56935	Porins
APT_10114	SSF52833	Thioredoxin-like
APT_10115	SSF53474	alpha/beta-Hydrolases
APT_10118	SSF56601	beta-lactamase/transpeptidase-like
APT_10119	SSF54427	NTF2-like
APT_10120	SSF53098	Ribonuclease H-like
APT_10121	SSF53098	Ribonuclease H-like
APT_10123	SSF81340	Clc chloride channel
APT_10124	SSF46785	"Winged helix" DNA-binding domain
APT_10126	SSF46689	Homeodomain-like
APT_10127	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_10128	SSF46785	"Winged helix" DNA-binding domain
APT_10128	SSF53850	Periplasmic binding protein-like II
APT_10129	SSF54909	Dimeric alpha+beta barrel
APT_10130	SSF56281	Metallo-hydrolase/oxidoreductase
APT_10132	SSF53098	Ribonuclease H-like
APT_10134	SSF46689	Homeodomain-like
APT_10137	SSF46785	"Winged helix" DNA-binding domain
APT_10137	SSF53850	Periplasmic binding protein-like II
APT_10138	SSF51726	UROD/MetE-like
APT_10140	SSF50022	ISP domain
APT_10140	SSF55961	Bet v1-like
APT_10148	SSF56672	DNA/RNA polymerases
APT_10149	SSF53041	Resolvase-like
APT_10152	SSF54060	His-Me finger endonucleases
APT_10155	SSF89447	AbrB/MazE/MraZ-like
APT_10156	SSF46785	"Winged helix" DNA-binding domain
APT_10156	SSF54909	Dimeric alpha+beta barrel
APT_10158	SSF46785	"Winged helix" DNA-binding domain
APT_10158	SSF53850	Periplasmic binding protein-like II
APT_10160	SSF46785	"Winged helix" DNA-binding domain
APT_10160	SSF53850	Periplasmic binding protein-like II
APT_10161	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_10162	SSF56801	Acetyl-CoA synthetase-like
APT_10163	SSF51905	FAD/NAD(P)-binding domain
APT_10165	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
APT_10166	SSF55326	PurM N-terminal domain-like
APT_10166	SSF56042	PurM C-terminal domain-like
APT_10167	SSF55729	Acyl-CoA N-acyltransferases (Nat)
APT_10168	SSF102114	Radical SAM enzymes
APT_10169	SSF56317	Carbon-nitrogen hydrolase
APT_10170	SSF75169	DsrEFH-like
APT_10171	SSF46785	"Winged helix" DNA-binding domain
APT_10171	SSF53383	PLP-dependent transferases
APT_10172	SSF53474	alpha/beta-Hydrolases
APT_10173	SSF46785	"Winged helix" DNA-binding domain
APT_10173	SSF53850	Periplasmic binding protein-like II
APT_10174	SSF103473	MFS general substrate transporter
APT_10175	SSF103473	MFS general substrate transporter
APT_10176	SSF103473	MFS general substrate transporter
APT_10177	SSF51395	FMN-linked oxidoreductases
APT_10178	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_10179	SSF46689	Homeodomain-like
APT_10180	SSF56300	Metallo-dependent phosphatases
APT_10181	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_10182	SSF46689	Homeodomain-like
APT_10182	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_10183	SSF47616	GST C-terminal domain-like
APT_10183	SSF52833	Thioredoxin-like
APT_10184	SSF46689	Homeodomain-like
APT_10184	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_10185	SSF53474	alpha/beta-Hydrolases
APT_10186	SSF103473	MFS general substrate transporter
APT_10187	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_10188	SSF46689	Homeodomain-like
APT_10188	SSF48498	Tetracyclin repressor-like, C-terminal domain
APT_10189	SSF51735	NAD(P)-binding Rossmann-fold domains
APT_10190	SSF55961	Bet v1-like
APT_10192	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10193	SSF52540	P-loop containing nucleoside triphosphate hydrolases
APT_10194	SSF56672	DNA/RNA polymerases
APT_10196	SSF53901	Thiolase-like
APT_10197	SSF49764	HSP20-like chaperones
APT_10201	SSF47823	lambda integrase-like, N-terminal domain
APT_10201	SSF56349	DNA breaking-rejoining enzymes
APT_20001	SSF51294	Hedgehog/intein (Hint) domain
APT_20002	SSF46689	Homeodomain-like
APT_20003	SSF53098	Ribonuclease H-like
APT_20004	SSF46689	Homeodomain-like
APT_20004	SSF53041	Resolvase-like
APT_20006	SSF46785	"Winged helix" DNA-binding domain