locus-tag class description S1001342_00001 PF00308 Bacterial dnaA protein S1001342_00001 PF11638 DnaA N-terminal domain S1001342_00001 PF08299 Bacterial dnaA protein helix-turn-helix S1001342_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain S1001342_00002 PF02767 DNA polymerase III beta subunit, central domain S1001342_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain S1001342_00003 PF02463 RecF/RecN/SMC N terminal domain S1001342_00004 PF00204 DNA gyrase B S1001342_00004 PF00986 DNA gyrase B subunit, carboxyl terminus S1001342_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_00004 PF01751 Toprim domain S1001342_00005 PF00793 DAHP synthetase I family S1001342_00006 PF06418 CTP synthase N-terminus S1001342_00006 PF00117 Glutamine amidotransferase class-I S1001342_00008 PF00121 Triosephosphate isomerase S1001342_00010 PF04715 Anthranilate synthase component I, N terminal region S1001342_00010 PF00425 chorismate binding enzyme S1001342_00011 PF00117 Glutamine amidotransferase class-I S1001342_00012 PF00591 Glycosyl transferase family, a/b domain S1001342_00012 PF02885 Glycosyl transferase family, helical bundle domain S1001342_00013 PF00218 Indole-3-glycerol phosphate synthase S1001342_00014 PF01967 MoaC family S1001342_00015 PF00676 Dehydrogenase E1 component S1001342_00016 PF02779 Transketolase, pyrimidine binding domain S1001342_00016 PF00364 Biotin-requiring enzyme S1001342_00016 PF02780 Transketolase, C-terminal domain S1001342_00017 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) S1001342_00017 PF02817 e3 binding domain S1001342_00017 PF00364 Biotin-requiring enzyme S1001342_00018 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_00018 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S1001342_00019 PF04055 Radical SAM superfamily S1001342_00022 PF02464 Competence-damaged protein S1001342_00024 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain S1001342_00024 PF01464 Transglycosylase SLT domain S1001342_00025 PF03741 Integral membrane protein TerC family S1001342_00026 PF00206 Lyase S1001342_00026 PF10397 Adenylosuccinate lyase C-terminus S1001342_00027 PF01259 SAICAR synthetase S1001342_00028 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase S1001342_00031 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain S1001342_00031 PF00586 AIR synthase related protein, N-terminal domain S1001342_00031 PF02769 AIR synthase related protein, C-terminal domain S1001342_00032 PF01722 BolA-like protein S1001342_00033 PF00462 Glutaredoxin S1001342_00035 PF02021 Uncharacterised protein family UPF0102 S1001342_00038 PF01594 AI-2E family transporter S1001342_00039 PF00581 Rhodanese-like domain S1001342_00040 PF01053 Cys/Met metabolism PLP-dependent enzyme S1001342_00041 PF13335 Magnesium chelatase, subunit ChlI C-terminal S1001342_00041 PF01078 Magnesium chelatase, subunit ChlI S1001342_00045 PF13335 Magnesium chelatase, subunit ChlI C-terminal S1001342_00045 PF01078 Magnesium chelatase, subunit ChlI S1001342_00046 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S1001342_00046 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S1001342_00047 PF00459 Inositol monophosphatase family S1001342_00048 PF00034 Cytochrome c S1001342_00049 PF02348 Cytidylyltransferase S1001342_00050 PF01842 ACT domain S1001342_00050 PF01817 Chorismate mutase type II S1001342_00050 PF00800 Prephenate dehydratase S1001342_00051 PF00701 Dihydrodipicolinate synthetase family S1001342_00052 PF01668 SmpB protein S1001342_00053 PF00313 'Cold-shock' DNA-binding domain S1001342_00059 PF00698 Acyl transferase domain S1001342_00062 PF00550 Phosphopantetheine attachment site S1001342_00063 PF00109 Beta-ketoacyl synthase, N-terminal domain S1001342_00063 PF02801 Beta-ketoacyl synthase, C-terminal domain S1001342_00064 PF02618 YceG-like family S1001342_00066 PF00459 Inositol monophosphatase family S1001342_00068 PF02606 Tetraacyldisaccharide-1-P 4'-kinase S1001342_00069 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) S1001342_00071 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain S1001342_00071 PF01077 Nitrite and sulphite reductase 4Fe-4S domain S1001342_00073 PF00009 Elongation factor Tu GTP binding domain S1001342_00074 PF01507 Phosphoadenosine phosphosulfate reductase family S1001342_00075 PF01507 Phosphoadenosine phosphosulfate reductase family S1001342_00077 PF04055 Radical SAM superfamily S1001342_00077 PF06968 Biotin and Thiamin Synthesis associated domain S1001342_00079 PF06508 Queuosine biosynthesis protein QueC S1001342_00081 PF06039 Malate:quinone oxidoreductase (Mqo) S1001342_00082 PF02566 OsmC-like protein S1001342_00083 PF01264 Chorismate synthase S1001342_00085 PF01243 Pyridoxamine 5'-phosphate oxidase S1001342_00085 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region S1001342_00087 PF12706 Beta-lactamase superfamily domain S1001342_00088 PF01026 TatD related DNase S1001342_00089 PF08264 Anticodon-binding domain of tRNA S1001342_00089 PF09334 tRNA synthetases class I (M) S1001342_00091 PF02223 Thymidylate kinase S1001342_00092 PF07943 Penicillin-binding protein 5, C-terminal domain S1001342_00092 PF00768 D-alanyl-D-alanine carboxypeptidase S1001342_00093 PF03330 Lytic transglycolase S1001342_00093 PF05036 Sporulation related domain S1001342_00094 PF13406 Transglycosylase SLT domain S1001342_00095 PF09335 SNARE associated Golgi protein S1001342_00097 PF13520 Amino acid permease S1001342_00098 PF02673 Bacitracin resistance protein BacA S1001342_00102 PF13847 Methyltransferase domain S1001342_00102 PF17827 PrmC N-terminal domain S1001342_00104 PF03462 PCRF domain S1001342_00104 PF00472 RF-1 domain S1001342_00105 PF03129 Anticodon binding domain S1001342_00105 PF13393 Histidyl-tRNA synthetase S1001342_00106 PF04551 GcpE protein S1001342_00108 PF03060 Nitronate monooxygenase S1001342_00109 PF00696 Amino acid kinase family S1001342_00109 PF01842 ACT domain S1001342_00109 PF13840 ACT domain S1001342_00111 PF10282 Lactonase, 7-bladed beta-propeller S1001342_00114 PF00462 Glutaredoxin S1001342_00115 PF00156 Phosphoribosyl transferase domain S1001342_00116 PF08241 Methyltransferase domain S1001342_00117 PF06463 Molybdenum Cofactor Synthesis C S1001342_00117 PF04055 Radical SAM superfamily S1001342_00118 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S1001342_00118 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S1001342_00118 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S1001342_00118 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S1001342_00119 PF00483 Nucleotidyl transferase S1001342_00121 PF03099 Biotin/lipoate A/B protein ligase family S1001342_00123 PF01722 BolA-like protein S1001342_00124 PF00684 DnaJ central domain S1001342_00124 PF00226 DnaJ domain S1001342_00124 PF01556 DnaJ C terminal domain S1001342_00125 PF12556 Cobaltochelatase CobS subunit N terminal S1001342_00125 PF07728 AAA domain (dynein-related subfamily) S1001342_00125 PF08406 CbbQ/NirQ/NorQ C-terminal S1001342_00126 PF11775 Cobalamin biosynthesis protein CobT VWA domain S1001342_00126 PF06213 Cobalamin biosynthesis protein CobT S1001342_00127 PF00282 Pyridoxal-dependent decarboxylase conserved domain S1001342_00128 PF13593 SBF-like CPA transporter family (DUF4137) S1001342_00130 PF00271 Helicase conserved C-terminal domain S1001342_00130 PF03461 TRCF domain S1001342_00130 PF02559 CarD-like/TRCF domain S1001342_00130 PF00270 DEAD/DEAH box helicase S1001342_00130 PF17757 UvrB interaction domain S1001342_00131 PF03937 Flavinator of succinate dehydrogenase S1001342_00132 PF00270 DEAD/DEAH box helicase S1001342_00132 PF00271 Helicase conserved C-terminal domain S1001342_00132 PF17191 RecG wedge domain S1001342_00133 PF02581 Thiamine monophosphate synthase S1001342_00134 PF05690 Thiazole biosynthesis protein ThiG S1001342_00136 PF01266 FAD dependent oxidoreductase S1001342_00138 PF00113 Enolase, C-terminal TIM barrel domain S1001342_00138 PF03952 Enolase, N-terminal domain S1001342_00140 PF00471 Ribosomal protein L33 S1001342_00141 PF00994 Probable molybdopterin binding domain S1001342_00141 PF03454 MoeA C-terminal region (domain IV) S1001342_00141 PF03453 MoeA N-terminal region (domain I and II) S1001342_00142 PF00717 Peptidase S24-like S1001342_00142 PF01726 LexA DNA binding domain S1001342_00143 PF13649 Methyltransferase domain S1001342_00145 PF00155 Aminotransferase class I and II S1001342_00146 PF00202 Aminotransferase class-III S1001342_00147 PF02391 MoaE protein S1001342_00148 PF02597 ThiS family S1001342_00150 PF01066 CDP-alcohol phosphatidyltransferase S1001342_00151 PF08459 UvrC Helix-hairpin-helix N-terminal S1001342_00151 PF02151 UvrB/uvrC motif S1001342_00151 PF12826 Helix-hairpin-helix motif S1001342_00151 PF01541 GIY-YIG catalytic domain S1001342_00152 PF01244 Membrane dipeptidase (Peptidase family M19) S1001342_00155 PF07244 Surface antigen variable number repeat S1001342_00155 PF01103 Surface antigen S1001342_00155 PF17243 POTRA domain TamA domain 1 S1001342_00157 PF00919 Uncharacterized protein family UPF0004 S1001342_00157 PF01938 TRAM domain S1001342_00157 PF04055 Radical SAM superfamily S1001342_00158 PF02562 PhoH-like protein S1001342_00159 PF02130 Uncharacterized protein family UPF0054 S1001342_00160 PF00571 CBS domain S1001342_00160 PF03471 Transporter associated domain S1001342_00161 PF13462 Thioredoxin S1001342_00162 PF02463 RecF/RecN/SMC N terminal domain S1001342_00164 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain S1001342_00164 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain S1001342_00166 PF02153 Prephenate dehydrogenase S1001342_00166 PF01817 Chorismate mutase type II S1001342_00168 PF00285 Citrate synthase, C-terminal domain S1001342_00170 PF00156 Phosphoribosyl transferase domain S1001342_00171 PF01177 Asp/Glu/Hydantoin racemase S1001342_00172 PF00348 Polyprenyl synthetase S1001342_00174 PF00268 Ribonucleotide reductase, small chain S1001342_00175 PF03477 ATP cone domain S1001342_00175 PF00317 Ribonucleotide reductase, all-alpha domain S1001342_00175 PF02867 Ribonucleotide reductase, barrel domain S1001342_00176 PF01408 Oxidoreductase family, NAD-binding Rossmann fold S1001342_00176 PF02894 Oxidoreductase family, C-terminal alpha/beta domain S1001342_00177 PF02355 Protein export membrane protein S1001342_00177 PF07549 SecD/SecF GG Motif S1001342_00178 PF07549 SecD/SecF GG Motif S1001342_00178 PF02355 Protein export membrane protein S1001342_00180 PF01741 Large-conductance mechanosensitive channel, MscL S1001342_00181 PF01197 Ribosomal protein L31 S1001342_00182 PF00011 Hsp20/alpha crystallin family S1001342_00186 PF00731 AIR carboxylase S1001342_00187 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain S1001342_00187 PF02222 ATP-grasp domain S1001342_00188 PF04002 RadC-like JAB domain S1001342_00189 PF04002 RadC-like JAB domain S1001342_00190 PF13361 UvrD-like helicase C-terminal domain S1001342_00190 PF00580 UvrD/REP helicase N-terminal domain S1001342_00192 PF01321 Creatinase/Prolidase N-terminal domain S1001342_00192 PF00557 Metallopeptidase family M24 S1001342_00193 PF00180 Isocitrate/isopropylmalate dehydrogenase S1001342_00193 PF18324 Hypothetical protein TT1725 S1001342_00195 PF16658 Class II release factor RF3, C-terminal domain S1001342_00195 PF00009 Elongation factor Tu GTP binding domain S1001342_00195 PF03144 Elongation factor Tu domain 2 S1001342_00196 PF01479 S4 domain S1001342_00196 PF00163 Ribosomal protein S4/S9 N-terminal domain S1001342_00198 PF00999 Sodium/hydrogen exchanger family S1001342_00200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S1001342_00201 PF12849 PBP superfamily domain S1001342_00202 PF01588 Putative tRNA binding domain S1001342_00202 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain S1001342_00202 PF03484 tRNA synthetase B5 domain S1001342_00202 PF03483 B3/4 domain S1001342_00202 PF03147 Ferredoxin-fold anticodon binding domain S1001342_00203 PF01409 tRNA synthetases class II core domain (F) S1001342_00203 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain S1001342_00204 PF00453 Ribosomal protein L20 S1001342_00205 PF01632 Ribosomal protein L35 S1001342_00206 PF01232 Mannitol dehydrogenase Rossmann domain S1001342_00206 PF08125 Mannitol dehydrogenase C-terminal domain S1001342_00207 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S1001342_00207 PF00034 Cytochrome c S1001342_00207 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase S1001342_00208 PF00111 2Fe-2S iron-sulfur cluster binding domain S1001342_00208 PF01799 [2Fe-2S] binding domain S1001342_00209 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase S1001342_00210 PF02657 Fe-S metabolism associated domain S1001342_00211 PF10431 C-terminal, D2-small domain, of ClpB protein S1001342_00211 PF07724 AAA domain (Cdc48 subfamily) S1001342_00211 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_00212 PF00227 Proteasome subunit S1001342_00213 PF13188 PAS domain S1001342_00213 PF08448 PAS fold S1001342_00213 PF00072 Response regulator receiver domain S1001342_00213 PF00512 His Kinase A (phospho-acceptor) domain S1001342_00213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_00214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_00214 PF13188 PAS domain S1001342_00214 PF00512 His Kinase A (phospho-acceptor) domain S1001342_00214 PF08448 PAS fold S1001342_00214 PF00072 Response regulator receiver domain S1001342_00217 PF00005 ABC transporter S1001342_00220 PF00756 Putative esterase S1001342_00221 PF01062 Bestrophin, RFP-TM, chloride channel S1001342_00222 PF02559 CarD-like/TRCF domain S1001342_00225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S1001342_00227 PF13417 Glutathione S-transferase, N-terminal domain S1001342_00227 PF00043 Glutathione S-transferase, C-terminal domain S1001342_00228 PF03775 Septum formation inhibitor MinC, C-terminal domain S1001342_00228 PF05209 Septum formation inhibitor MinC, N-terminal domain S1001342_00229 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain S1001342_00230 PF03776 Septum formation topological specificity factor MinE S1001342_00231 PF07729 FCD domain S1001342_00231 PF00392 Bacterial regulatory proteins, gntR family S1001342_00232 PF00664 ABC transporter transmembrane region S1001342_00232 PF00005 ABC transporter S1001342_00236 PF04453 LPS transport system D S1001342_00237 PF09312 SurA N-terminal domain S1001342_00237 PF00639 PPIC-type PPIASE domain S1001342_00238 PF00398 Ribosomal RNA adenine dimethylase S1001342_00240 PF01281 Ribosomal protein L9, N-terminal domain S1001342_00240 PF03948 Ribosomal protein L9, C-terminal domain S1001342_00241 PF01084 Ribosomal protein S18 S1001342_00242 PF01250 Ribosomal protein S6 S1001342_00244 PF04546 Sigma-70, non-essential region S1001342_00244 PF03979 Sigma-70 factor, region 1.1 S1001342_00244 PF00140 Sigma-70 factor, region 1.2 S1001342_00244 PF04545 Sigma-70, region 4 S1001342_00244 PF04539 Sigma-70 region 3 S1001342_00244 PF04542 Sigma-70 region 2 S1001342_00245 PF08275 DNA primase catalytic core, N-terminal domain S1001342_00245 PF13662 Toprim domain S1001342_00245 PF08278 DNA primase DnaG DnaB-binding S1001342_00245 PF10410 DnaB-helicase binding domain of primase S1001342_00245 PF01807 CHC2 zinc finger S1001342_00247 PF00117 Glutamine amidotransferase class-I S1001342_00247 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain S1001342_00248 PF02142 MGS-like domain S1001342_00248 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain S1001342_00248 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain S1001342_00249 PF03449 Transcription elongation factor, N-terminal S1001342_00249 PF01272 Transcription elongation factor, GreA/GreB, C-term S1001342_00250 PF13291 ACT domain S1001342_00250 PF00291 Pyridoxal-phosphate dependent enzyme S1001342_00251 PF06415 BPG-independent PGAM N-terminus (iPGM_N) S1001342_00251 PF01676 Metalloenzyme superfamily S1001342_00253 PF13180 PDZ domain S1001342_00253 PF03572 Peptidase family S41 S1001342_00255 PF00293 NUDIX domain S1001342_00256 PF07690 Major Facilitator Superfamily S1001342_00257 PF13533 Biotin-lipoyl like S1001342_00258 PF00005 ABC transporter S1001342_00258 PF00664 ABC transporter transmembrane region S1001342_00259 PF01743 Poly A polymerase head domain S1001342_00259 PF13735 tRNA nucleotidyltransferase domain 2 putative S1001342_00259 PF12627 Probable RNA and SrmB- binding site of polymerase A S1001342_00261 PF17863 AAA lid domain S1001342_00261 PF07726 ATPase family associated with various cellular activities (AAA) S1001342_00266 PF01555 DNA methylase S1001342_00266 PF18755 Restriction Enzyme Adenine Methylase Associated S1001342_00267 PF01351 Ribonuclease HII S1001342_00268 PF05532 CsbD-like S1001342_00269 PF07690 Major Facilitator Superfamily S1001342_00270 PF13533 Biotin-lipoyl like S1001342_00271 PF00873 AcrB/AcrD/AcrF family S1001342_00272 PF00873 AcrB/AcrD/AcrF family S1001342_00273 PF02321 Outer membrane efflux protein S1001342_00274 PF07043 Protein of unknown function (DUF1328) S1001342_00276 PF00005 ABC transporter S1001342_00277 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_00279 PF01196 Ribosomal protein L17 S1001342_00280 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain S1001342_00280 PF01000 RNA polymerase Rpb3/RpoA insert domain S1001342_00280 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain S1001342_00281 PF00411 Ribosomal protein S11 S1001342_00282 PF00416 Ribosomal protein S13/S18 S1001342_00283 PF05191 Adenylate kinase, active site lid S1001342_00284 PF00344 SecY translocase S1001342_00285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A S1001342_00286 PF00327 Ribosomal protein L30p/L7e S1001342_00287 PF00333 Ribosomal protein S5, N-terminal domain S1001342_00287 PF03719 Ribosomal protein S5, C-terminal domain S1001342_00288 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast S1001342_00289 PF00347 Ribosomal protein L6 S1001342_00290 PF00410 Ribosomal protein S8 S1001342_00291 PF00253 Ribosomal protein S14p/S29e S1001342_00292 PF00673 ribosomal L5P family C-terminus S1001342_00292 PF00281 Ribosomal protein L5 S1001342_00293 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 S1001342_00294 PF00238 Ribosomal protein L14p/L23e S1001342_00295 PF00366 Ribosomal protein S17 S1001342_00296 PF00831 Ribosomal L29 protein S1001342_00297 PF00252 Ribosomal protein L16p/L10e S1001342_00298 PF07650 KH domain S1001342_00298 PF00189 Ribosomal protein S3, C-terminal domain S1001342_00299 PF00237 Ribosomal protein L22p/L17e S1001342_00300 PF00203 Ribosomal protein S19 S1001342_00301 PF03947 Ribosomal Proteins L2, C-terminal domain S1001342_00301 PF00181 Ribosomal Proteins L2, RNA binding domain S1001342_00302 PF00276 Ribosomal protein L23 S1001342_00303 PF00573 Ribosomal protein L4/L1 family S1001342_00304 PF00297 Ribosomal protein L3 S1001342_00305 PF00338 Ribosomal protein S10p/S20e S1001342_00306 PF03144 Elongation factor Tu domain 2 S1001342_00306 PF03143 Elongation factor Tu C-terminal domain S1001342_00306 PF00009 Elongation factor Tu GTP binding domain S1001342_00307 PF00177 Ribosomal protein S7p/S5e S1001342_00308 PF00164 Ribosomal protein S12/S23 S1001342_00309 PF04997 RNA polymerase Rpb1, domain 1 S1001342_00309 PF04998 RNA polymerase Rpb1, domain 5 S1001342_00309 PF05000 RNA polymerase Rpb1, domain 4 S1001342_00309 PF00623 RNA polymerase Rpb1, domain 2 S1001342_00309 PF04983 RNA polymerase Rpb1, domain 3 S1001342_00310 PF04563 RNA polymerase beta subunit S1001342_00310 PF04561 RNA polymerase Rpb2, domain 2 S1001342_00310 PF04560 RNA polymerase Rpb2, domain 7 S1001342_00310 PF00562 RNA polymerase Rpb2, domain 6 S1001342_00310 PF10385 RNA polymerase beta subunit external 1 domain S1001342_00310 PF04565 RNA polymerase Rpb2, domain 3 S1001342_00311 PF16320 Ribosomal protein L7/L12 dimerisation domain S1001342_00311 PF00542 Ribosomal protein L7/L12 C-terminal domain S1001342_00312 PF00466 Ribosomal protein L10 S1001342_00313 PF00687 Ribosomal protein L1p/L10e family S1001342_00314 PF00298 Ribosomal protein L11, RNA binding domain S1001342_00314 PF03946 Ribosomal protein L11, N-terminal domain S1001342_00315 PF02321 Outer membrane efflux protein S1001342_00316 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S1001342_00317 PF00873 AcrB/AcrD/AcrF family S1001342_00318 PF00512 His Kinase A (phospho-acceptor) domain S1001342_00318 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_00319 PF00072 Response regulator receiver domain S1001342_00319 PF00486 Transcriptional regulatory protein, C terminal S1001342_00320 PF02646 RmuC family S1001342_00321 PF00083 Sugar (and other) transporter S1001342_00323 PF00578 AhpC/TSA family S1001342_00324 PF03710 Glutamate-ammonia ligase adenylyltransferase S1001342_00324 PF08335 GlnD PII-uridylyltransferase S1001342_00329 PF03588 Leucyl/phenylalanyl-tRNA protein transferase S1001342_00330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S1001342_00330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain S1001342_00337 PF01578 Cytochrome C assembly protein S1001342_00339 PF03100 CcmE S1001342_00340 PF01578 Cytochrome C assembly protein S1001342_00340 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal S1001342_00341 PF08534 Redoxin S1001342_00342 PF03918 Cytochrome C biogenesis protein S1001342_00346 PF04632 Fusaric acid resistance protein family S1001342_00347 PF04632 Fusaric acid resistance protein family S1001342_00348 PF17655 Inward rectifier potassium channel C-terminal domain S1001342_00348 PF07885 Ion channel S1001342_00352 PF00005 ABC transporter S1001342_00355 PF02541 Ppx/GppA phosphatase family S1001342_00356 PF13089 Polyphosphate kinase N-terminal domain S1001342_00356 PF17941 Polyphosphate kinase C-terminal domain 1 S1001342_00356 PF13090 Polyphosphate kinase C-terminal domain 2 S1001342_00356 PF02503 Polyphosphate kinase middle domain S1001342_00358 PF00586 AIR synthase related protein, N-terminal domain S1001342_00358 PF02769 AIR synthase related protein, C-terminal domain S1001342_00359 PF00551 Formyl transferase S1001342_00360 PF01189 16S rRNA methyltransferase RsmB/F S1001342_00360 PF01029 NusB family S1001342_00361 PF00834 Ribulose-phosphate 3 epimerase family S1001342_00363 PF00534 Glycosyl transferases group 1 S1001342_00363 PF13579 Glycosyl transferase 4-like domain S1001342_00365 PF00929 Exonuclease S1001342_00366 PF01121 Dephospho-CoA kinase S1001342_00367 PF18317 Shikimate 5'-dehydrogenase C-terminal domain S1001342_00367 PF08501 Shikimate dehydrogenase substrate binding domain S1001342_00367 PF01488 Shikimate / quinate 5-dehydrogenase S1001342_00370 PF00206 Lyase S1001342_00370 PF14698 Argininosuccinate lyase C-terminal S1001342_00371 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain S1001342_00371 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain S1001342_00373 PF16363 GDP-mannose 4,6 dehydratase S1001342_00374 PF00089 Trypsin S1001342_00375 PF08240 Alcohol dehydrogenase GroES-like domain S1001342_00376 PF01022 Bacterial regulatory protein, arsR family S1001342_00377 PF00724 NADH:flavin oxidoreductase / NADH oxidase family S1001342_00378 PF02548 Ketopantoate hydroxymethyltransferase S1001342_00380 PF00589 Phage integrase family S1001342_00380 PF02899 Phage integrase, N-terminal SAM-like domain S1001342_00383 PF00239 Resolvase, N terminal domain S1001342_00388 PF00171 Aldehyde dehydrogenase family S1001342_00389 PF02423 Ornithine cyclodeaminase/mu-crystallin family S1001342_00390 PF00881 Nitroreductase family S1001342_00393 PF13340 Putative transposase of IS4/5 family (DUF4096) S1001342_00395 PF01048 Phosphorylase superfamily S1001342_00396 PF00033 Cytochrome b/b6/petB S1001342_00396 PF00032 Cytochrome b(C-terminal)/b6/petD S1001342_00396 PF02167 Cytochrome C1 family S1001342_00397 PF02167 Cytochrome C1 family S1001342_00397 PF00032 Cytochrome b(C-terminal)/b6/petD S1001342_00397 PF00033 Cytochrome b/b6/petB S1001342_00398 PF01218 Coproporphyrinogen III oxidase S1001342_00400 PF00488 MutS domain V S1001342_00400 PF01713 Smr domain S1001342_00401 PF00034 Cytochrome c S1001342_00401 PF03150 Di-haem cytochrome c peroxidase S1001342_00402 PF01555 DNA methylase S1001342_00404 PF00934 PE family S1001342_00404 PF00300 Histidine phosphatase superfamily (branch 1) S1001342_00405 PF02556 Preprotein translocase subunit SecB S1001342_00407 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain S1001342_00407 PF03900 Porphobilinogen deaminase, C-terminal domain S1001342_00408 PF00814 Glycoprotease family S1001342_00409 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ S1001342_00412 PF01921 tRNA synthetases class I (K) S1001342_00413 PF02464 Competence-damaged protein S1001342_00413 PF18146 Damage-inducible protein CinA KH domain S1001342_00413 PF00994 Probable molybdopterin binding domain S1001342_00414 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit S1001342_00415 PF02899 Phage integrase, N-terminal SAM-like domain S1001342_00415 PF00589 Phage integrase family S1001342_00417 PF01761 3-dehydroquinate synthase S1001342_00418 PF00691 OmpA family S1001342_00420 PF02272 DHHA1 domain S1001342_00420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain S1001342_00420 PF01411 tRNA synthetases class II (A) S1001342_00421 PF02666 Phosphatidylserine decarboxylase S1001342_00422 PF01066 CDP-alcohol phosphatidyltransferase S1001342_00423 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit S1001342_00424 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit S1001342_00430 PF16123 Hydroxyacylglutathione hydrolase C-terminus S1001342_00430 PF00753 Metallo-beta-lactamase superfamily S1001342_00433 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain S1001342_00433 PF05221 S-adenosyl-L-homocysteine hydrolase S1001342_00436 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S1001342_00436 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_00437 PF02817 e3 binding domain S1001342_00437 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) S1001342_00437 PF00364 Biotin-requiring enzyme S1001342_00438 PF16870 2-oxoglutarate dehydrogenase C-terminal S1001342_00438 PF02779 Transketolase, pyrimidine binding domain S1001342_00438 PF00676 Dehydrogenase E1 component S1001342_00438 PF16078 2-oxoglutarate dehydrogenase N-terminus S1001342_00439 PF03969 AFG1-like ATPase S1001342_00440 PF02627 Carboxymuconolactone decarboxylase family S1001342_00441 PF13567 Domain of unknown function (DUF4131) S1001342_00441 PF03772 Competence protein S1001342_00441 PF00753 Metallo-beta-lactamase superfamily S1001342_00442 PF00749 tRNA synthetases class I (E and Q), catalytic domain S1001342_00443 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain S1001342_00443 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain S1001342_00444 PF01979 Amidohydrolase family S1001342_00445 PF02660 Glycerol-3-phosphate acyltransferase S1001342_00446 PF02481 DNA recombination-mediator protein A S1001342_00446 PF17782 DprA winged helix domain S1001342_00447 PF01751 Toprim domain S1001342_00447 PF13368 Topoisomerase C-terminal repeat S1001342_00447 PF01396 Topoisomerase DNA binding C4 zinc finger S1001342_00447 PF01131 DNA topoisomerase S1001342_00448 PF08206 Ribonuclease B OB domain S1001342_00448 PF00773 RNB domain S1001342_00448 PF00575 S1 RNA binding domain S1001342_00448 PF17876 Cold shock domain S1001342_00448 PF08461 Ribonuclease R winged-helix domain S1001342_00449 PF13180 PDZ domain S1001342_00449 PF03572 Peptidase family S41 S1001342_00451 PF00691 OmpA family S1001342_00452 PF00291 Pyridoxal-phosphate dependent enzyme S1001342_00453 PF02082 Transcriptional regulator S1001342_00456 PF00204 DNA gyrase B S1001342_00456 PF00986 DNA gyrase B subunit, carboxyl terminus S1001342_00456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_00456 PF01751 Toprim domain S1001342_00457 PF00892 EamA-like transporter family S1001342_00458 PF00361 Proton-conducting membrane transporter S1001342_00458 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus S1001342_00459 PF08676 MutL C terminal dimerisation domain S1001342_00459 PF01119 DNA mismatch repair protein, C-terminal domain S1001342_00461 PF01252 Signal peptidase (SPase) II S1001342_00462 PF00133 tRNA synthetases class I (I, L, M and V) S1001342_00462 PF06827 Zinc finger found in FPG and IleRS S1001342_00462 PF08264 Anticodon-binding domain of tRNA S1001342_00463 PF06574 FAD synthetase S1001342_00463 PF01687 Riboflavin kinase S1001342_00465 PF03079 ARD/ARD' family S1001342_00466 PF00596 Class II Aldolase and Adducin N-terminal domain S1001342_00467 PF02416 mttA/Hcf106 family S1001342_00470 PF00202 Aminotransferase class-III S1001342_00471 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain S1001342_00471 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain S1001342_00473 PF01430 Hsp33 protein S1001342_00475 PF04408 Helicase associated domain (HA2) S1001342_00475 PF00270 DEAD/DEAH box helicase S1001342_00475 PF08482 ATP-dependent helicase C-terminal S1001342_00475 PF00271 Helicase conserved C-terminal domain S1001342_00476 PF13180 PDZ domain S1001342_00477 PF00248 Aldo/keto reductase family S1001342_00479 PF02789 Cytosol aminopeptidase family, N-terminal domain S1001342_00479 PF00883 Cytosol aminopeptidase family, catalytic domain S1001342_00480 PF00459 Inositol monophosphatase family S1001342_00481 PF01300 Telomere recombination S1001342_00481 PF03481 Putative GTP-binding controlling metal-binding S1001342_00483 PF01565 FAD binding domain S1001342_00483 PF02913 FAD linked oxidases, C-terminal domain S1001342_00486 PF01923 Cobalamin adenosyltransferase S1001342_00492 PF16177 Acetyl-coenzyme A synthetase N-terminus S1001342_00492 PF13193 AMP-binding enzyme C-terminal domain S1001342_00492 PF00501 AMP-binding enzyme S1001342_00495 PF00171 Aldehyde dehydrogenase family S1001342_00495 PF18327 Proline utilization A proline dehydrogenase N-terminal domain S1001342_00495 PF14850 DNA-binding domain of Proline dehydrogenase S1001342_00495 PF01619 Proline dehydrogenase S1001342_00497 PF00324 Amino acid permease S1001342_00501 PF00239 Resolvase, N terminal domain S1001342_00501 PF02796 Helix-turn-helix domain of resolvase S1001342_00504 PF18073 Rubredoxin metal binding domain S1001342_00504 PF06745 KaiC S1001342_00505 PF02405 Permease MlaE S1001342_00506 PF00005 ABC transporter S1001342_00508 PF12795 Mechanosensitive ion channel porin domain S1001342_00508 PF00924 Mechanosensitive ion channel S1001342_00508 PF12794 Mechanosensitive ion channel inner membrane domain 1 S1001342_00510 PF03796 DnaB-like helicase C terminal domain S1001342_00510 PF00772 DnaB-like helicase N terminal domain S1001342_00512 PF01467 Cytidylyltransferase-like S1001342_00512 PF00294 pfkB family carbohydrate kinase S1001342_00513 PF00625 Guanylate kinase S1001342_00514 PF00106 short chain dehydrogenase S1001342_00514 PF00561 alpha/beta hydrolase fold S1001342_00516 PF08032 RNA 2'-O ribose methyltransferase substrate binding S1001342_00516 PF00588 SpoU rRNA Methylase family S1001342_00517 PF01612 3'-5' exonuclease S1001342_00517 PF00570 HRDC domain S1001342_00518 PF01380 SIS domain S1001342_00518 PF00571 CBS domain S1001342_00521 PF00005 ABC transporter S1001342_00522 PF00111 2Fe-2S iron-sulfur cluster binding domain S1001342_00522 PF03473 MOSC domain S1001342_00522 PF03476 MOSC N-terminal beta barrel domain S1001342_00524 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein S1001342_00524 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus S1001342_00526 PF00011 Hsp20/alpha crystallin family S1001342_00527 PF01327 Polypeptide deformylase S1001342_00528 PF00551 Formyl transferase S1001342_00528 PF02911 Formyl transferase, C-terminal domain S1001342_00529 PF01416 tRNA pseudouridine synthase S1001342_00531 PF01546 Peptidase family M20/M25/M40 S1001342_00531 PF07687 Peptidase dimerisation domain S1001342_00532 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal S1001342_00532 PF14602 Hexapeptide repeat of succinyl-transferase S1001342_00532 PF00132 Bacterial transferase hexapeptide (six repeats) S1001342_00533 PF00696 Amino acid kinase family S1001342_00534 PF01926 50S ribosome-binding GTPase S1001342_00535 PF02096 60Kd inner membrane protein S1001342_00535 PF14849 YidC periplasmic domain S1001342_00536 PF00825 Ribonuclease P S1001342_00537 PF00468 Ribosomal protein L34 S1001342_00539 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S1001342_00540 PF06230 LpxI C-terminal domain S1001342_00540 PF17930 LpxI N-terminal domain S1001342_00541 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 S1001342_00541 PF00132 Bacterial transferase hexapeptide (six repeats) S1001342_00542 PF07977 FabA-like domain S1001342_00543 PF00132 Bacterial transferase hexapeptide (six repeats) S1001342_00543 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD S1001342_00545 PF01103 Surface antigen S1001342_00545 PF07244 Surface antigen variable number repeat S1001342_00546 PF02163 Peptidase family M50 S1001342_00546 PF17820 PDZ domain S1001342_00547 PF13288 DXP reductoisomerase C-terminal domain S1001342_00547 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain S1001342_00547 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase S1001342_00549 PF01255 Putative undecaprenyl diphosphate synthase S1001342_00550 PF01765 Ribosome recycling factor S1001342_00551 PF00696 Amino acid kinase family S1001342_00552 PF07650 KH domain S1001342_00552 PF01926 50S ribosome-binding GTPase S1001342_00553 PF00035 Double-stranded RNA binding motif S1001342_00553 PF14622 Ribonuclease-III-like S1001342_00554 PF10502 Signal peptidase, peptidase S26 S1001342_00555 PF01648 4'-phosphopantetheinyl transferase superfamily S1001342_00556 PF04607 Region found in RelA / SpoT proteins S1001342_00556 PF13291 ACT domain S1001342_00556 PF02824 TGS domain S1001342_00557 PF01192 RNA polymerase Rpb6 S1001342_00558 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) S1001342_00560 PF00484 Carbonic anhydrase S1001342_00563 PF00270 DEAD/DEAH box helicase S1001342_00563 PF00271 Helicase conserved C-terminal domain S1001342_00564 PF00561 alpha/beta hydrolase fold S1001342_00564 PF07021 Methionine biosynthesis protein MetW S1001342_00565 PF00561 alpha/beta hydrolase fold S1001342_00566 PF00679 Elongation factor G C-terminus S1001342_00566 PF00009 Elongation factor Tu GTP binding domain S1001342_00566 PF03144 Elongation factor Tu domain 2 S1001342_00566 PF06421 GTP-binding protein LepA C-terminus S1001342_00569 PF01011 PQQ enzyme repeat S1001342_00571 PF03951 Glutamine synthetase, beta-Grasp domain S1001342_00571 PF00120 Glutamine synthetase, catalytic domain S1001342_00572 PF00543 Nitrogen regulatory protein P-II S1001342_00573 PF00155 Aminotransferase class I and II S1001342_00577 PF00180 Isocitrate/isopropylmalate dehydrogenase S1001342_00578 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_00579 PF01266 FAD dependent oxidoreductase S1001342_00585 PF00224 Pyruvate kinase, barrel domain S1001342_00585 PF02887 Pyruvate kinase, alpha/beta domain S1001342_00587 PF00899 ThiF family S1001342_00592 PF03169 OPT oligopeptide transporter protein S1001342_00595 PF00561 alpha/beta hydrolase fold S1001342_00597 PF01545 Cation efflux family S1001342_00598 PF16916 Dimerisation domain of Zinc Transporter S1001342_00598 PF01545 Cation efflux family S1001342_00599 PF00654 Voltage gated chloride channel S1001342_00600 PF02492 CobW/HypB/UreG, nucleotide-binding domain S1001342_00600 PF07683 Cobalamin synthesis protein cobW C-terminal domain S1001342_00602 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_00604 PF00011 Hsp20/alpha crystallin family S1001342_00605 PF00561 alpha/beta hydrolase fold S1001342_00605 PF00364 Biotin-requiring enzyme S1001342_00606 PF02779 Transketolase, pyrimidine binding domain S1001342_00606 PF02780 Transketolase, C-terminal domain S1001342_00607 PF00676 Dehydrogenase E1 component S1001342_00609 PF01384 Phosphate transporter family S1001342_00610 PF03976 Polyphosphate kinase 2 (PPK2) S1001342_00614 PF01431 Peptidase family M13 S1001342_00614 PF05649 Peptidase family M13 S1001342_00617 PF03061 Thioesterase superfamily S1001342_00620 PF02537 CrcB-like protein, Camphor Resistance (CrcB) S1001342_00621 PF00106 short chain dehydrogenase S1001342_00622 PF02082 Transcriptional regulator S1001342_00623 PF04343 Protein of unknown function, DUF488 S1001342_00624 PF00551 Formyl transferase S1001342_00633 PF00999 Sodium/hydrogen exchanger family S1001342_00662 PF01757 Acyltransferase family S1001342_00686 PF00593 TonB dependent receptor S1001342_00686 PF07715 TonB-dependent Receptor Plug Domain S1001342_00700 PF02325 YGGT family S1001342_00709 PF01381 Helix-turn-helix S1001342_00709 PF06114 IrrE N-terminal-like domain S1001342_00709 PF09856 Predicted transcriptional regulator (DUF2083) S1001342_00711 PF01479 S4 domain S1001342_00711 PF00579 tRNA synthetases class I (W and Y) S1001342_00722 PF03354 Phage Terminase S1001342_00753 PF01799 [2Fe-2S] binding domain S1001342_00753 PF00111 2Fe-2S iron-sulfur cluster binding domain S1001342_00754 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase S1001342_00755 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S1001342_00755 PF00034 Cytochrome c S1001342_00756 PF00171 Aldehyde dehydrogenase family S1001342_00757 PF03466 LysR substrate binding domain S1001342_00757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_00758 PF00248 Aldo/keto reductase family S1001342_00760 PF00578 AhpC/TSA family S1001342_00763 PF02975 Methylamine dehydrogenase, L chain S1001342_00764 PF00578 AhpC/TSA family S1001342_00765 PF07291 Methylamine utilisation protein MauE S1001342_00767 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_00767 PF03466 LysR substrate binding domain S1001342_00771 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus S1001342_00771 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus S1001342_00773 PF00155 Aminotransferase class I and II S1001342_00776 PF01641 SelR domain S1001342_00777 PF03441 FAD binding domain of DNA photolyase S1001342_00777 PF00875 DNA photolyase S1001342_00781 PF13580 SIS domain S1001342_00782 PF01869 BadF/BadG/BcrA/BcrD ATPase family S1001342_00783 PF00728 Glycosyl hydrolase family 20, catalytic domain S1001342_00783 PF07691 PA14 domain S1001342_00783 PF02838 Glycosyl hydrolase family 20, domain 2 S1001342_00784 PF00005 ABC transporter S1001342_00785 PF01032 FecCD transport family S1001342_00787 PF07715 TonB-dependent Receptor Plug Domain S1001342_00787 PF00593 TonB dependent receptor S1001342_00789 PF00999 Sodium/hydrogen exchanger family S1001342_00793 PF01008 Initiation factor 2 subunit family S1001342_00796 PF00291 Pyridoxal-phosphate dependent enzyme S1001342_00797 PF00958 GMP synthase C terminal domain S1001342_00797 PF00117 Glutamine amidotransferase class-I S1001342_00797 PF02540 NAD synthase S1001342_00800 PF00083 Sugar (and other) transporter S1001342_00801 PF10145 Phage-related minor tail protein S1001342_00801 PF01464 Transglycosylase SLT domain S1001342_00801 PF01551 Peptidase family M23 S1001342_00802 PF02652 L-lactate permease S1001342_00804 PF01370 NAD dependent epimerase/dehydratase family S1001342_00805 PF01790 Prolipoprotein diacylglyceryl transferase S1001342_00811 PF00005 ABC transporter S1001342_00812 PF02694 Uncharacterised BCR, YnfA/UPF0060 family S1001342_00815 PF00155 Aminotransferase class I and II S1001342_00817 PF00456 Transketolase, thiamine diphosphate binding domain S1001342_00817 PF02779 Transketolase, pyrimidine binding domain S1001342_00817 PF02780 Transketolase, C-terminal domain S1001342_00818 PF00923 Transaldolase/Fructose-6-phosphate aldolase S1001342_00819 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain S1001342_00819 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase S1001342_00821 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase S1001342_00822 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) S1001342_00827 PF00654 Voltage gated chloride channel S1001342_00829 PF01168 Alanine racemase, N-terminal domain S1001342_00830 PF02705 K+ potassium transporter S1001342_00831 PF06969 HemN C-terminal domain S1001342_00831 PF04055 Radical SAM superfamily S1001342_00840 PF05159 Capsule polysaccharide biosynthesis protein S1001342_00841 PF05159 Capsule polysaccharide biosynthesis protein S1001342_00842 PF13439 Glycosyltransferase Family 4 S1001342_00842 PF00534 Glycosyl transferases group 1 S1001342_00843 PF13439 Glycosyltransferase Family 4 S1001342_00843 PF00534 Glycosyl transferases group 1 S1001342_00844 PF02563 Polysaccharide biosynthesis/export protein S1001342_00846 PF01061 ABC-2 type transporter S1001342_00847 PF00005 ABC transporter S1001342_00848 PF01527 Transposase S1001342_00849 PF01527 Transposase S1001342_00853 PF01527 Transposase S1001342_00854 PF00665 Integrase core domain S1001342_00854 PF13276 HTH-like domain S1001342_00854 PF13333 Integrase core domain S1001342_00855 PF01548 Transposase S1001342_00855 PF02371 Transposase IS116/IS110/IS902 family S1001342_00859 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S1001342_00859 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S1001342_00859 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S1001342_00859 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S1001342_00860 PF01050 Mannose-6-phosphate isomerase S1001342_00860 PF00483 Nucleotidyl transferase S1001342_00863 PF00534 Glycosyl transferases group 1 S1001342_00863 PF13477 Glycosyl transferase 4-like S1001342_00865 PF01527 Transposase S1001342_00867 PF13005 zinc-finger binding domain of transposase IS66 S1001342_00867 PF13007 Transposase C of IS166 homeodomain S1001342_00867 PF13817 IS66 C-terminal element S1001342_00867 PF03050 Transposase IS66 family S1001342_00869 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S1001342_00869 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S1001342_00869 PF00205 Thiamine pyrophosphate enzyme, central domain S1001342_00873 PF00210 Ferritin-like domain S1001342_00874 PF03960 ArsC family S1001342_00876 PF03352 Methyladenine glycosylase S1001342_00878 PF00578 AhpC/TSA family S1001342_00878 PF10417 C-terminal domain of 1-Cys peroxiredoxin S1001342_00879 PF00753 Metallo-beta-lactamase superfamily S1001342_00880 PF01925 Sulfite exporter TauE/SafE S1001342_00882 PF03960 ArsC family S1001342_00884 PF02321 Outer membrane efflux protein S1001342_00885 PF13533 Biotin-lipoyl like S1001342_00887 PF03466 LysR substrate binding domain S1001342_00887 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_00895 PF01370 NAD dependent epimerase/dehydratase family S1001342_00897 PF00753 Metallo-beta-lactamase superfamily S1001342_00899 PF13478 XdhC Rossmann domain S1001342_00899 PF02625 XdhC and CoxI family S1001342_00903 PF02347 Glycine cleavage system P-protein S1001342_00904 PF01597 Glycine cleavage H-protein S1001342_00905 PF08669 Glycine cleavage T-protein C-terminal barrel domain S1001342_00905 PF01571 Aminomethyltransferase folate-binding domain S1001342_00906 PF17284 Spermidine synthase tetramerisation domain S1001342_00907 PF02675 S-adenosylmethionine decarboxylase S1001342_00909 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_00909 PF03466 LysR substrate binding domain S1001342_00911 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD S1001342_00912 PF01467 Cytidylyltransferase-like S1001342_00913 PF03989 DNA gyrase C-terminal domain, beta-propeller S1001342_00913 PF00521 DNA gyrase/topoisomerase IV, subunit A S1001342_00916 PF00013 KH domain S1001342_00916 PF01138 3' exoribonuclease family, domain 1 S1001342_00916 PF03725 3' exoribonuclease family, domain 2 S1001342_00916 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain S1001342_00916 PF00575 S1 RNA binding domain S1001342_00918 PF00312 Ribosomal protein S15 S1001342_00919 PF01509 TruB family pseudouridylate synthase (N terminal domain) S1001342_00919 PF16198 tRNA pseudouridylate synthase B C-terminal domain S1001342_00920 PF02405 Permease MlaE S1001342_00921 PF00005 ABC transporter S1001342_00922 PF02470 MlaD protein S1001342_00930 PF03412 Peptidase C39 family S1001342_00930 PF00664 ABC transporter transmembrane region S1001342_00930 PF00005 ABC transporter S1001342_00932 PF00809 Pterin binding enzyme S1001342_00932 PF02574 Homocysteine S-methyltransferase S1001342_00932 PF02965 Vitamin B12 dependent methionine synthase, activation domain S1001342_00932 PF02607 B12 binding domain S1001342_00932 PF02310 B12 binding domain S1001342_00935 PF13537 Glutamine amidotransferase domain S1001342_00935 PF00156 Phosphoribosyl transferase domain S1001342_00937 PF02470 MlaD protein S1001342_00938 PF04403 Paraquat-inducible protein A S1001342_00940 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase S1001342_00941 PF00535 Glycosyl transferase family 2 S1001342_00942 PF00430 ATP synthase B/B' CF(0) S1001342_00943 PF00430 ATP synthase B/B' CF(0) S1001342_00944 PF00137 ATP synthase subunit C S1001342_00945 PF00119 ATP synthase A chain S1001342_00946 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter S1001342_00948 PF00448 SRP54-type protein, GTPase domain S1001342_00948 PF02881 SRP54-type protein, helical bundle domain S1001342_00949 PF04055 Radical SAM superfamily S1001342_00949 PF00919 Uncharacterized protein family UPF0004 S1001342_00950 PF01678 Diaminopimelate epimerase S1001342_00951 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S1001342_00953 PF00270 DEAD/DEAH box helicase S1001342_00953 PF03880 DbpA RNA binding domain S1001342_00953 PF00271 Helicase conserved C-terminal domain S1001342_00956 PF00380 Ribosomal protein S9/S16 S1001342_00957 PF00572 Ribosomal protein L13 S1001342_00960 PF01895 PhoU domain S1001342_00961 PF00005 ABC transporter S1001342_00962 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_00963 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_00964 PF00920 Dehydratase family S1001342_00967 PF00107 Zinc-binding dehydrogenase S1001342_00967 PF08240 Alcohol dehydrogenase GroES-like domain S1001342_00969 PF13180 PDZ domain S1001342_00972 PF10609 NUBPL iron-transfer P-loop NTPase S1001342_00975 PF02511 Thymidylate synthase complementing protein S1001342_00977 PF05681 Fumarate hydratase (Fumerase) S1001342_00977 PF05683 Fumarase C-terminus S1001342_00978 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily S1001342_00981 PF01266 FAD dependent oxidoreductase S1001342_00982 PF01168 Alanine racemase, N-terminal domain S1001342_00982 PF00842 Alanine racemase, C-terminal domain S1001342_00983 PF01037 Lrp/AsnC ligand binding domain S1001342_00984 PF02033 Ribosome-binding factor A S1001342_00985 PF04760 Translation initiation factor IF-2, N-terminal region S1001342_00985 PF00009 Elongation factor Tu GTP binding domain S1001342_00985 PF11987 Translation-initiation factor 2 S1001342_00985 PF08364 Bacterial translation initiation factor IF-2 associated region S1001342_00987 PF00575 S1 RNA binding domain S1001342_00987 PF13184 NusA-like KH domain S1001342_00987 PF08529 NusA N-terminal domain S1001342_00988 PF17384 RimP C-terminal SH3 domain S1001342_00988 PF02576 RimP N-terminal domain S1001342_00990 PF07724 AAA domain (Cdc48 subfamily) S1001342_00990 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_00990 PF10431 C-terminal, D2-small domain, of ClpB protein S1001342_00990 PF17871 AAA lid domain S1001342_00990 PF02861 Clp amino terminal domain, pathogenicity island component S1001342_00992 PF03466 LysR substrate binding domain S1001342_00992 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_00993 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_00994 PF00005 ABC transporter S1001342_00995 PF00694 Aconitase C-terminal domain S1001342_00995 PF00330 Aconitase family (aconitate hydratase) S1001342_00997 PF00005 ABC transporter S1001342_00998 PF03379 CcmB protein S1001342_01000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain S1001342_01000 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain S1001342_01001 PF03631 Virulence factor BrkB S1001342_01002 PF03330 Lytic transglycolase S1001342_01002 PF05036 Sporulation related domain S1001342_01003 PF01220 Dehydroquinase class II S1001342_01004 PF00364 Biotin-requiring enzyme S1001342_01005 PF02785 Biotin carboxylase C-terminal domain S1001342_01005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain S1001342_01005 PF00289 Biotin carboxylase, N-terminal domain S1001342_01006 PF00083 Sugar (and other) transporter S1001342_01007 PF01964 Radical SAM ThiC family S1001342_01007 PF13667 ThiC-associated domain S1001342_01010 PF03239 Iron permease FTR1 family S1001342_01011 PF10634 Fe2+ transport protein S1001342_01012 PF04966 Carbohydrate-selective porin, OprB family S1001342_01016 PF00202 Aminotransferase class-III S1001342_01019 PF03652 Holliday junction resolvase S1001342_01020 PF02686 Glu-tRNAGln amidotransferase C subunit S1001342_01021 PF01425 Amidase S1001342_01022 PF02637 GatB domain S1001342_01022 PF02934 GatB/GatE catalytic domain S1001342_01041 PF13340 Putative transposase of IS4/5 family (DUF4096) S1001342_01048 PF01434 Peptidase family M41 S1001342_01048 PF17862 AAA+ lid domain S1001342_01048 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_01059 PF00005 ABC transporter S1001342_01059 PF00664 ABC transporter transmembrane region S1001342_01060 PF10576 Iron-sulfur binding domain of endonuclease III S1001342_01060 PF00633 Helix-hairpin-helix motif S1001342_01060 PF00730 HhH-GPD superfamily base excision DNA repair protein S1001342_01061 PF00762 Ferrochelatase S1001342_01062 PF00633 Helix-hairpin-helix motif S1001342_01062 PF14815 NUDIX domain S1001342_01062 PF00730 HhH-GPD superfamily base excision DNA repair protein S1001342_01066 PF12100 Domain of unknown function (DUF3576) S1001342_01067 PF00133 tRNA synthetases class I (I, L, M and V) S1001342_01067 PF08264 Anticodon-binding domain of tRNA S1001342_01067 PF13603 Leucyl-tRNA synthetase, Domain 2 S1001342_01077 PF02321 Outer membrane efflux protein S1001342_01079 PF01012 Electron transfer flavoprotein domain S1001342_01079 PF00766 Electron transfer flavoprotein FAD-binding domain S1001342_01080 PF01012 Electron transfer flavoprotein domain S1001342_01083 PF04055 Radical SAM superfamily S1001342_01085 PF00027 Cyclic nucleotide-binding domain S1001342_01085 PF13545 Crp-like helix-turn-helix domain S1001342_01086 PF13180 PDZ domain S1001342_01087 PF14437 MafB19-like deaminase S1001342_01089 PF07722 Peptidase C26 S1001342_01090 PF00849 RNA pseudouridylate synthase S1001342_01090 PF01479 S4 domain S1001342_01092 PF00436 Single-strand binding protein family S1001342_01094 PF01258 Prokaryotic dksA/traR C4-type zinc finger S1001342_01099 PF00239 Resolvase, N terminal domain S1001342_01101 PF13005 zinc-finger binding domain of transposase IS66 S1001342_01101 PF03050 Transposase IS66 family S1001342_01101 PF13817 IS66 C-terminal element S1001342_01101 PF13007 Transposase C of IS166 homeodomain S1001342_01103 PF01527 Transposase S1001342_01105 PF13439 Glycosyltransferase Family 4 S1001342_01105 PF00534 Glycosyl transferases group 1 S1001342_01107 PF00579 tRNA synthetases class I (W and Y) S1001342_01108 PF01523 Putative modulator of DNA gyrase S1001342_01109 PF00300 Histidine phosphatase superfamily (branch 1) S1001342_01111 PF16363 GDP-mannose 4,6 dehydratase S1001342_01112 PF00483 Nucleotidyl transferase S1001342_01113 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase S1001342_01114 PF04321 RmlD substrate binding domain S1001342_01115 PF00535 Glycosyl transferase family 2 S1001342_01116 PF13491 4TM region of DNA translocase FtsK/SpoIIIE S1001342_01116 PF17854 FtsK alpha domain S1001342_01116 PF09397 Ftsk gamma domain S1001342_01116 PF01580 FtsK/SpoIIIE family S1001342_01117 PF00849 RNA pseudouridylate synthase S1001342_01117 PF01479 S4 domain S1001342_01118 PF13439 Glycosyltransferase Family 4 S1001342_01118 PF00534 Glycosyl transferases group 1 S1001342_01121 PF00111 2Fe-2S iron-sulfur cluster binding domain S1001342_01122 PF00266 Aminotransferase class-V S1001342_01124 PF02129 X-Pro dipeptidyl-peptidase (S15 family) S1001342_01126 PF01406 tRNA synthetases class I (C) catalytic domain S1001342_01126 PF09190 DALR domain S1001342_01128 PF02875 Mur ligase family, glutamate ligase domain S1001342_01128 PF08245 Mur ligase middle domain S1001342_01129 PF01039 Carboxyl transferase domain S1001342_01129 PF17848 Acetyl-coA carboxylase zinc finger domain S1001342_01130 PF00085 Thioredoxin S1001342_01131 PF00580 UvrD/REP helicase N-terminal domain S1001342_01131 PF13361 UvrD-like helicase C-terminal domain S1001342_01131 PF12705 PD-(D/E)XK nuclease superfamily S1001342_01132 PF12705 PD-(D/E)XK nuclease superfamily S1001342_01133 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE S1001342_01134 PF00072 Response regulator receiver domain S1001342_01134 PF00486 Transcriptional regulatory protein, C terminal S1001342_01135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S1001342_01135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S1001342_01135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S1001342_01135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S1001342_01136 PF00809 Pterin binding enzyme S1001342_01137 PF06480 FtsH Extracellular S1001342_01137 PF17862 AAA+ lid domain S1001342_01137 PF01434 Peptidase family M41 S1001342_01137 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_01138 PF01171 PP-loop family S1001342_01140 PF00691 OmpA family S1001342_01141 PF04052 TolB amino-terminal domain S1001342_01141 PF07676 WD40-like Beta Propeller Repeat S1001342_01143 PF02472 Biopolymer transport protein ExbD/TolR S1001342_01144 PF01618 MotA/TolQ/ExbB proton channel family S1001342_01145 PF03061 Thioesterase superfamily S1001342_01146 PF17864 RuvB AAA lid domain S1001342_01146 PF05496 Holliday junction DNA helicase RuvB P-loop domain S1001342_01146 PF05491 RuvB C-terminal winged helix domain S1001342_01147 PF01330 RuvA N terminal domain S1001342_01147 PF07499 RuvA, C-terminal domain S1001342_01148 PF02075 Crossover junction endodeoxyribonuclease RuvC S1001342_01149 PF01709 Transcriptional regulator S1001342_01150 PF07516 SecA Wing and Scaffold domain S1001342_01150 PF01043 SecA preprotein cross-linking domain S1001342_01150 PF07517 SecA DEAD-like domain S1001342_01150 PF02810 SEC-C motif S1001342_01152 PF01960 ArgJ family S1001342_01154 PF00924 Mechanosensitive ion channel S1001342_01162 PF03807 NADP oxidoreductase coenzyme F420-dependent S1001342_01162 PF14748 Pyrroline-5-carboxylate reductase dimerisation S1001342_01166 PF00216 Bacterial DNA-binding protein S1001342_01170 PF00535 Glycosyl transferase family 2 S1001342_01170 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase S1001342_01172 PF00795 Carbon-nitrogen hydrolase S1001342_01172 PF02540 NAD synthase S1001342_01173 PF00475 Imidazoleglycerol-phosphate dehydratase S1001342_01174 PF00117 Glutamine amidotransferase class-I S1001342_01175 PF00977 Histidine biosynthesis protein S1001342_01176 PF00977 Histidine biosynthesis protein S1001342_01177 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase S1001342_01178 PF01230 HIT domain S1001342_01179 PF00881 Nitroreductase family S1001342_01180 PF01494 FAD binding domain S1001342_01181 PF13811 Domain of unknown function (DUF4186) S1001342_01188 PF17762 HTH domain found in ParB protein S1001342_01188 PF02195 ParB-like nuclease domain S1001342_01189 PF13614 AAA domain S1001342_01190 PF02527 rRNA small subunit methyltransferase G S1001342_01191 PF01134 Glucose inhibited division protein A S1001342_01191 PF13932 GidA associated domain S1001342_01192 PF01926 50S ribosome-binding GTPase S1001342_01192 PF10396 GTP-binding protein TrmE N-terminus S1001342_01192 PF12631 MnmE helical domain S1001342_01193 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain S1001342_01193 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain S1001342_01197 PF03641 Possible lysine decarboxylase S1001342_01198 PF07690 Major Facilitator Superfamily S1001342_01201 PF13419 Haloacid dehalogenase-like hydrolase S1001342_01202 PF01208 Uroporphyrinogen decarboxylase (URO-D) S1001342_01203 PF02545 Maf-like protein S1001342_01205 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 S1001342_01207 PF07690 Major Facilitator Superfamily S1001342_01209 PF03966 Trm112p-like protein S1001342_01210 PF05362 Lon protease (S16) C-terminal proteolytic domain S1001342_01210 PF02190 ATP-dependent protease La (LON) substrate-binding domain S1001342_01210 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_01211 PF00085 Thioredoxin S1001342_01212 PF17760 UvrA interaction domain S1001342_01212 PF17755 UvrA DNA-binding domain S1001342_01219 PF00881 Nitroreductase family S1001342_01221 PF00583 Acetyltransferase (GNAT) family S1001342_01222 PF02843 Phosphoribosylglycinamide synthetase, C domain S1001342_01222 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain S1001342_01222 PF02844 Phosphoribosylglycinamide synthetase, N domain S1001342_01223 PF02601 Exonuclease VII, large subunit S1001342_01223 PF13742 OB-fold nucleic acid binding domain S1001342_01226 PF00266 Aminotransferase class-V S1001342_01232 PF00171 Aldehyde dehydrogenase family S1001342_01233 PF08240 Alcohol dehydrogenase GroES-like domain S1001342_01233 PF00107 Zinc-binding dehydrogenase S1001342_01234 PF02233 NAD(P) transhydrogenase beta subunit S1001342_01235 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch S1001342_01236 PF01262 Alanine dehydrogenase/PNT, C-terminal domain S1001342_01236 PF05222 Alanine dehydrogenase/PNT, N-terminal domain S1001342_01237 PF02774 Semialdehyde dehydrogenase, dimerisation domain S1001342_01237 PF01118 Semialdehyde dehydrogenase, NAD binding domain S1001342_01238 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit S1001342_01239 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit S1001342_01240 PF00890 FAD binding domain S1001342_01240 PF02910 Fumarate reductase flavoprotein C-term S1001342_01241 PF13085 2Fe-2S iron-sulfur cluster binding domain S1001342_01243 PF00892 EamA-like transporter family S1001342_01244 PF00162 Phosphoglycerate kinase S1001342_01245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain S1001342_01245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain S1001342_01246 PF02779 Transketolase, pyrimidine binding domain S1001342_01246 PF00456 Transketolase, thiamine diphosphate binding domain S1001342_01246 PF02780 Transketolase, C-terminal domain S1001342_01248 PF00155 Aminotransferase class I and II S1001342_01249 PF13462 Thioredoxin S1001342_01251 PF00154 recA bacterial DNA recombination protein S1001342_01253 PF03459 TOBE domain S1001342_01253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_01254 PF04349 Periplasmic glucan biosynthesis protein, MdoG S1001342_01255 PF13632 Glycosyl transferase family group 2 S1001342_01256 PF01979 Amidohydrolase family S1001342_01257 PF07690 Major Facilitator Superfamily S1001342_01259 PF12169 DNA polymerase III subunits gamma and tau domain III S1001342_01259 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding S1001342_01259 PF12170 DNA polymerase III tau subunit V interacting with alpha S1001342_01260 PF02575 YbaB/EbfC DNA-binding family S1001342_01261 PF02132 RecR protein S1001342_01261 PF13662 Toprim domain S1001342_01263 PF02152 Dihydroneopterin aldolase S1001342_01265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) S1001342_01266 PF02224 Cytidylate kinase S1001342_01267 PF00575 S1 RNA binding domain S1001342_01269 PF01725 Ham1 family S1001342_01270 PF03725 3' exoribonuclease family, domain 2 S1001342_01270 PF01138 3' exoribonuclease family, domain 1 S1001342_01271 PF01628 HrcA protein C terminal domain S1001342_01272 PF17092 Penicillin-binding protein OB-like domain S1001342_01272 PF00912 Transglycosylase S1001342_01272 PF00905 Penicillin binding protein transpeptidase domain S1001342_01273 PF00472 RF-1 domain S1001342_01273 PF03462 PCRF domain S1001342_01275 PF01618 MotA/TolQ/ExbB proton channel family S1001342_01276 PF02472 Biopolymer transport protein ExbD/TolR S1001342_01277 PF02472 Biopolymer transport protein ExbD/TolR S1001342_01279 PF01098 Cell cycle protein S1001342_01280 PF03717 Penicillin-binding Protein dimerisation domain S1001342_01280 PF00905 Penicillin binding protein transpeptidase domain S1001342_01284 PF08502 LeuA allosteric (dimerisation) domain S1001342_01284 PF00682 HMGL-like S1001342_01285 PF02628 Cytochrome oxidase assembly protein S1001342_01287 PF07690 Major Facilitator Superfamily S1001342_01288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_01288 PF00512 His Kinase A (phospho-acceptor) domain S1001342_01288 PF08448 PAS fold S1001342_01288 PF13188 PAS domain S1001342_01288 PF00072 Response regulator receiver domain S1001342_01289 PF00156 Phosphoribosyl transferase domain S1001342_01290 PF04632 Fusaric acid resistance protein family S1001342_01291 PF13660 Domain of unknown function (DUF4147) S1001342_01291 PF05161 MOFRL family S1001342_01292 PF03167 Uracil DNA glycosylase superfamily S1001342_01293 PF00034 Cytochrome c S1001342_01293 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S1001342_01294 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S1001342_01294 PF13360 PQQ-like domain S1001342_01296 PF01027 Inhibitor of apoptosis-promoting Bax1 S1001342_01297 PF00116 Cytochrome C oxidase subunit II, periplasmic domain S1001342_01297 PF06481 COX Aromatic Rich Motif S1001342_01298 PF00115 Cytochrome C and Quinol oxidase polypeptide I S1001342_01299 PF00510 Cytochrome c oxidase subunit III S1001342_01300 PF03626 Prokaryotic Cytochrome C oxidase subunit IV S1001342_01301 PF11953 Domain of unknown function (DUF3470) S1001342_01301 PF00037 4Fe-4S binding domain S1001342_01303 PF02789 Cytosol aminopeptidase family, N-terminal domain S1001342_01303 PF00883 Cytosol aminopeptidase family, catalytic domain S1001342_01306 PF00953 Glycosyl transferase family 4 S1001342_01307 PF02719 Polysaccharide biosynthesis protein S1001342_01308 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family S1001342_01310 PF01979 Amidohydrolase family S1001342_01311 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_01311 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain S1001342_01312 PF00970 Oxidoreductase FAD-binding domain S1001342_01312 PF00175 Oxidoreductase NAD-binding domain S1001342_01315 PF09335 SNARE associated Golgi protein S1001342_01316 PF00326 Prolyl oligopeptidase family S1001342_01317 PF03949 Malic enzyme, NAD binding domain S1001342_01317 PF00390 Malic enzyme, N-terminal domain S1001342_01318 PF02357 Transcription termination factor nusG S1001342_01318 PF00467 KOW motif S1001342_01322 PF00213 ATP synthase delta (OSCP) subunit S1001342_01323 PF00306 ATP synthase alpha/beta chain, C terminal domain S1001342_01323 PF02874 ATP synthase alpha/beta family, beta-barrel domain S1001342_01323 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S1001342_01324 PF00231 ATP synthase S1001342_01325 PF02874 ATP synthase alpha/beta family, beta-barrel domain S1001342_01325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S1001342_01326 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain S1001342_01327 PF14489 QueF-like protein S1001342_01328 PF01612 3'-5' exonuclease S1001342_01328 PF00570 HRDC domain S1001342_01329 PF00294 pfkB family carbohydrate kinase S1001342_01332 PF00324 Amino acid permease S1001342_01333 PF12857 TOBE-like domain S1001342_01333 PF17850 CysA C-terminal regulatory domain S1001342_01333 PF00005 ABC transporter S1001342_01334 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_01335 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_01340 PF12833 Helix-turn-helix domain S1001342_01340 PF02311 AraC-like ligand binding domain S1001342_01341 PF06751 Ethanolamine ammonia lyase large subunit (EutB) S1001342_01342 PF05985 Ethanolamine ammonia-lyase light chain (EutC) S1001342_01344 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S1001342_01344 PF00529 HlyD membrane-fusion protein of T1SS S1001342_01345 PF00873 AcrB/AcrD/AcrF family S1001342_01346 PF02321 Outer membrane efflux protein S1001342_01347 PF00313 'Cold-shock' DNA-binding domain S1001342_01349 PF07715 TonB-dependent Receptor Plug Domain S1001342_01349 PF00593 TonB dependent receptor S1001342_01349 PF07660 Secretin and TonB N terminus short domain S1001342_01352 PF01075 Glycosyltransferase family 9 (heptosyltransferase) S1001342_01359 PF03692 Putative zinc- or iron-chelating domain S1001342_01362 PF00005 ABC transporter S1001342_01362 PF08402 TOBE domain S1001342_01366 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S1001342_01366 PF00529 HlyD membrane-fusion protein of T1SS S1001342_01367 PF02321 Outer membrane efflux protein S1001342_01370 PF13249 Squalene-hopene cyclase N-terminal domain S1001342_01370 PF13243 Squalene-hopene cyclase C-terminal domain S1001342_01371 PF01593 Flavin containing amine oxidoreductase S1001342_01375 PF01370 NAD dependent epimerase/dehydratase family S1001342_01377 PF02153 Prephenate dehydrogenase S1001342_01379 PF00444 Ribosomal protein L36 S1001342_01380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_01380 PF03466 LysR substrate binding domain S1001342_01381 PF00578 AhpC/TSA family S1001342_01382 PF02627 Carboxymuconolactone decarboxylase family S1001342_01386 PF00719 Inorganic pyrophosphatase S1001342_01388 PF00005 ABC transporter S1001342_01388 PF12848 ABC transporter S1001342_01392 PF05099 Tellurite resistance protein TerB S1001342_01392 PF00226 DnaJ domain S1001342_01394 PF08331 Domain of unknown function (DUF1730) S1001342_01395 PF01702 Queuine tRNA-ribosyltransferase S1001342_01396 PF02547 Queuosine biosynthesis protein S1001342_01398 PF01161 Phosphatidylethanolamine-binding protein S1001342_01401 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain S1001342_01401 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain S1001342_01404 PF08471 Class II vitamin B12-dependent ribonucleotide reductase S1001342_01404 PF02867 Ribonucleotide reductase, barrel domain S1001342_01409 PF02358 Trehalose-phosphatase S1001342_01410 PF00982 Glycosyltransferase family 20 S1001342_01411 PF02600 Disulfide bond formation protein DsbB S1001342_01414 PF00248 Aldo/keto reductase family S1001342_01416 PF17757 UvrB interaction domain S1001342_01416 PF12344 Ultra-violet resistance protein B S1001342_01416 PF02151 UvrB/uvrC motif S1001342_01416 PF04851 Type III restriction enzyme, res subunit S1001342_01416 PF00271 Helicase conserved C-terminal domain S1001342_01418 PF00675 Insulinase (Peptidase family M16) S1001342_01418 PF05193 Peptidase M16 inactive domain S1001342_01424 PF00324 Amino acid permease S1001342_01430 PF00324 Amino acid permease S1001342_01431 PF11799 impB/mucB/samB family C-terminal domain S1001342_01431 PF00817 impB/mucB/samB family S1001342_01434 PF01180 Dihydroorotate dehydrogenase S1001342_01436 PF00293 NUDIX domain S1001342_01437 PF13277 YmdB-like protein S1001342_01438 PF01812 5-formyltetrahydrofolate cyclo-ligase family S1001342_01442 PF01791 DeoC/LacD family aldolase S1001342_01443 PF02581 Thiamine monophosphate synthase S1001342_01447 PF00152 tRNA synthetases class II (D, K and N) S1001342_01448 PF12544 Lysine-2,3-aminomutase S1001342_01448 PF04055 Radical SAM superfamily S1001342_01450 PF00557 Metallopeptidase family M24 S1001342_01451 PF00768 D-alanyl-D-alanine carboxypeptidase S1001342_01451 PF07943 Penicillin-binding protein 5, C-terminal domain S1001342_01452 PF02617 ATP-dependent Clp protease adaptor protein ClpS S1001342_01453 PF07724 AAA domain (Cdc48 subfamily) S1001342_01453 PF10431 C-terminal, D2-small domain, of ClpB protein S1001342_01453 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_01453 PF17871 AAA lid domain S1001342_01453 PF02861 Clp amino terminal domain, pathogenicity island component S1001342_01455 PF03976 Polyphosphate kinase 2 (PPK2) S1001342_01456 PF02622 Uncharacterized ACR, COG1678 S1001342_01457 PF03668 P-loop ATPase protein family S1001342_01459 PF13756 Stimulus-sensing domain S1001342_01459 PF00512 His Kinase A (phospho-acceptor) domain S1001342_01459 PF13755 Sensor N-terminal transmembrane domain S1001342_01459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_01459 PF00672 HAMP domain S1001342_01460 PF00072 Response regulator receiver domain S1001342_01460 PF00486 Transcriptional regulatory protein, C terminal S1001342_01461 PF01025 GrpE S1001342_01462 PF00012 Hsp70 protein S1001342_01463 PF00684 DnaJ central domain S1001342_01463 PF00226 DnaJ domain S1001342_01463 PF01556 DnaJ C terminal domain S1001342_01464 PF05173 Dihydrodipicolinate reductase, C-terminus S1001342_01464 PF01113 Dihydrodipicolinate reductase, N-terminus S1001342_01465 PF02773 S-adenosylmethionine synthetase, C-terminal domain S1001342_01465 PF00438 S-adenosylmethionine synthetase, N-terminal domain S1001342_01465 PF02772 S-adenosylmethionine synthetase, central domain S1001342_01466 PF02390 Putative methyltransferase S1001342_01467 PF01808 AICARFT/IMPCHase bienzyme S1001342_01467 PF02142 MGS-like domain S1001342_01470 PF00892 EamA-like transporter family S1001342_01471 PF02092 Glycyl-tRNA synthetase beta subunit S1001342_01471 PF05746 DALR anticodon binding domain S1001342_01472 PF02091 Glycyl-tRNA synthetase alpha subunit S1001342_01474 PF01381 Helix-turn-helix S1001342_01475 PF00795 Carbon-nitrogen hydrolase S1001342_01477 PF01475 Ferric uptake regulator family S1001342_01479 PF07497 Rho termination factor, RNA-binding domain S1001342_01479 PF07498 Rho termination factor, N-terminal domain S1001342_01479 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain S1001342_01481 PF01544 CorA-like Mg2+ transporter protein S1001342_01482 PF00291 Pyridoxal-phosphate dependent enzyme S1001342_01483 PF00290 Tryptophan synthase alpha chain S1001342_01484 PF04205 FMN-binding domain S1001342_01484 PF03358 NADPH-dependent FMN reductase S1001342_01484 PF00890 FAD binding domain S1001342_01486 PF13393 Histidyl-tRNA synthetase S1001342_01487 PF00709 Adenylosuccinate synthetase S1001342_01488 PF00486 Transcriptional regulatory protein, C terminal S1001342_01488 PF00072 Response regulator receiver domain S1001342_01489 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_01489 PF00512 His Kinase A (phospho-acceptor) domain S1001342_01489 PF00989 PAS fold S1001342_01489 PF11808 Phosphate regulon sensor protein PhoR S1001342_01490 PF12849 PBP superfamily domain S1001342_01494 PF00328 Histidine phosphatase superfamily (branch 2) S1001342_01495 PF01595 Cyclin M transmembrane N-terminal domain S1001342_01495 PF00571 CBS domain S1001342_01495 PF03471 Transporter associated domain S1001342_01496 PF08240 Alcohol dehydrogenase GroES-like domain S1001342_01496 PF00107 Zinc-binding dehydrogenase S1001342_01497 PF00005 ABC transporter S1001342_01497 PF00664 ABC transporter transmembrane region S1001342_01497 PF03412 Peptidase C39 family S1001342_01502 PF01118 Semialdehyde dehydrogenase, NAD binding domain S1001342_01503 PF03819 MazG nucleotide pyrophosphohydrolase domain S1001342_01505 PF00183 Hsp90 protein S1001342_01508 PF00589 Phage integrase family S1001342_01508 PF13495 Phage integrase, N-terminal SAM-like domain S1001342_01526 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) S1001342_01570 PF09856 Predicted transcriptional regulator (DUF2083) S1001342_01570 PF06114 IrrE N-terminal-like domain S1001342_01570 PF01381 Helix-turn-helix S1001342_01571 PF03972 MmgE/PrpD family S1001342_01572 PF00285 Citrate synthase, C-terminal domain S1001342_01574 PF13193 AMP-binding enzyme C-terminal domain S1001342_01574 PF00501 AMP-binding enzyme S1001342_01574 PF16177 Acetyl-coenzyme A synthetase N-terminus S1001342_01575 PF07690 Major Facilitator Superfamily S1001342_01576 PF07690 Major Facilitator Superfamily S1001342_01580 PF02073 Thermophilic metalloprotease (M29) S1001342_01583 PF00152 tRNA synthetases class II (D, K and N) S1001342_01583 PF02938 GAD domain S1001342_01583 PF01336 OB-fold nucleic acid binding domain S1001342_01584 PF01212 Beta-eliminating lyase S1001342_01585 PF01386 Ribosomal L25p family S1001342_01585 PF14693 Ribosomal protein TL5, C-terminal domain S1001342_01586 PF01195 Peptidyl-tRNA hydrolase S1001342_01587 PF06071 Protein of unknown function (DUF933) S1001342_01587 PF01926 50S ribosome-binding GTPase S1001342_01588 PF00171 Aldehyde dehydrogenase family S1001342_01589 PF01467 Cytidylyltransferase-like S1001342_01591 PF02590 Predicted SPOUT methyltransferase S1001342_01593 PF03466 LysR substrate binding domain S1001342_01593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_01594 PF03306 Alpha-acetolactate decarboxylase S1001342_01595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S1001342_01595 PF00205 Thiamine pyrophosphate enzyme, central domain S1001342_01595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S1001342_01597 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S1001342_01597 PF00205 Thiamine pyrophosphate enzyme, central domain S1001342_01597 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S1001342_01598 PF02754 Cysteine-rich domain S1001342_01599 PF11870 Domain of unknown function (DUF3390) S1001342_01599 PF02589 LUD domain S1001342_01599 PF13183 4Fe-4S dicluster domain S1001342_01601 PF13536 Putative multidrug resistance efflux transporter S1001342_01602 PF13536 Putative multidrug resistance efflux transporter S1001342_01603 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) S1001342_01604 PF00692 dUTPase S1001342_01607 PF04794 YdjC-like protein S1001342_01611 PF13292 1-deoxy-D-xylulose-5-phosphate synthase S1001342_01611 PF02779 Transketolase, pyrimidine binding domain S1001342_01611 PF02780 Transketolase, C-terminal domain S1001342_01612 PF06463 Molybdenum Cofactor Synthesis C S1001342_01612 PF04055 Radical SAM superfamily S1001342_01613 PF01595 Cyclin M transmembrane N-terminal domain S1001342_01613 PF03471 Transporter associated domain S1001342_01613 PF00571 CBS domain S1001342_01614 PF01464 Transglycosylase SLT domain S1001342_01616 PF03167 Uracil DNA glycosylase superfamily S1001342_01618 PF08544 GHMP kinases C terminal S1001342_01618 PF00288 GHMP kinases N terminal domain S1001342_01620 PF00106 short chain dehydrogenase S1001342_01623 PF01554 MatE S1001342_01625 PF00005 ABC transporter S1001342_01627 PF14572 Phosphoribosyl synthetase-associated domain S1001342_01627 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase S1001342_01636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_01636 PF03466 LysR substrate binding domain S1001342_01637 PF00999 Sodium/hydrogen exchanger family S1001342_01639 PF01475 Ferric uptake regulator family S1001342_01641 PF00005 ABC transporter S1001342_01642 PF00950 ABC 3 transport family S1001342_01644 PF01613 Flavin reductase like domain S1001342_01645 PF00378 Enoyl-CoA hydratase/isomerase S1001342_01646 PF01184 GPR1/FUN34/yaaH family S1001342_01647 PF04632 Fusaric acid resistance protein family S1001342_01650 PF07683 Cobalamin synthesis protein cobW C-terminal domain S1001342_01650 PF02492 CobW/HypB/UreG, nucleotide-binding domain S1001342_01651 PF02514 CobN/Magnesium Chelatase S1001342_01652 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain S1001342_01652 PF07685 CobB/CobQ-like glutamine amidotransferase domain S1001342_01654 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP S1001342_01654 PF12557 Cob(I)alamin adenosyltransferase N terminal S1001342_01655 PF07685 CobB/CobQ-like glutamine amidotransferase domain S1001342_01655 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain S1001342_01656 PF00881 Nitroreductase family S1001342_01657 PF03186 CobD/Cbib protein S1001342_01658 PF00155 Aminotransferase class I and II S1001342_01659 PF02654 Cobalamin-5-phosphate synthase S1001342_01660 PF02277 Phosphoribosyltransferase S1001342_01661 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase S1001342_01662 PF07690 Major Facilitator Superfamily S1001342_01663 PF00171 Aldehyde dehydrogenase family S1001342_01664 PF00034 Cytochrome c S1001342_01664 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S1001342_01665 PF05199 GMC oxidoreductase S1001342_01665 PF00732 GMC oxidoreductase S1001342_01666 PF05199 GMC oxidoreductase S1001342_01666 PF00732 GMC oxidoreductase S1001342_01670 PF00375 Sodium:dicarboxylate symporter family S1001342_01671 PF00355 Rieske [2Fe-2S] domain S1001342_01674 PF02472 Biopolymer transport protein ExbD/TolR S1001342_01675 PF01618 MotA/TolQ/ExbB proton channel family S1001342_01676 PF07715 TonB-dependent Receptor Plug Domain S1001342_01676 PF00593 TonB dependent receptor S1001342_01679 PF18331 PKHD-type hydroxylase C-terminal domain S1001342_01679 PF13640 2OG-Fe(II) oxygenase superfamily S1001342_01682 PF01609 Transposase DDE domain S1001342_01683 PF02668 Taurine catabolism dioxygenase TauD, TfdA family S1001342_01684 PF07690 Major Facilitator Superfamily S1001342_01685 PF00296 Luciferase-like monooxygenase S1001342_01688 PF01613 Flavin reductase like domain S1001342_01690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S1001342_01690 PF10414 Sirohaem synthase dimerisation region S1001342_01690 PF14824 Sirohaem biosynthesis protein central S1001342_01691 PF01565 FAD binding domain S1001342_01691 PF02913 FAD linked oxidases, C-terminal domain S1001342_01692 PF03180 NLPA lipoprotein S1001342_01693 PF09383 NIL domain S1001342_01693 PF00005 ABC transporter S1001342_01694 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_01695 PF00175 Oxidoreductase NAD-binding domain S1001342_01695 PF00042 Globin S1001342_01695 PF00970 Oxidoreductase FAD-binding domain S1001342_01696 PF01381 Helix-turn-helix S1001342_01697 PF00144 Beta-lactamase S1001342_01698 PF13532 2OG-Fe(II) oxygenase superfamily S1001342_01700 PF00474 Sodium:solute symporter family S1001342_01702 PF03702 Anhydro-N-acetylmuramic acid kinase S1001342_01704 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ S1001342_01705 PF04166 Pyridoxal phosphate biosynthetic protein PdxA S1001342_01707 PF02556 Preprotein translocase subunit SecB S1001342_01709 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family S1001342_01710 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase S1001342_01713 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin S1001342_01714 PF01979 Amidohydrolase family S1001342_01717 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster S1001342_01717 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_01718 PF01180 Dihydroorotate dehydrogenase S1001342_01719 PF01546 Peptidase family M20/M25/M40 S1001342_01719 PF07687 Peptidase dimerisation domain S1001342_01720 PF00155 Aminotransferase class I and II S1001342_01720 PF00392 Bacterial regulatory proteins, gntR family S1001342_01721 PF00202 Aminotransferase class-III S1001342_01722 PF14552 Tautomerase enzyme S1001342_01723 PF13360 PQQ-like domain S1001342_01723 PF01011 PQQ enzyme repeat S1001342_01725 PF00324 Amino acid permease S1001342_01726 PF04454 Encapsulating protein for peroxidase S1001342_01728 PF01654 Cytochrome bd terminal oxidase subunit I S1001342_01729 PF02322 Cytochrome bd terminal oxidase subunit II S1001342_01732 PF08946 Osmosensory transporter coiled coil S1001342_01732 PF00083 Sugar (and other) transporter S1001342_01735 PF00476 DNA polymerase family A S1001342_01735 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain S1001342_01735 PF01367 5'-3' exonuclease, C-terminal SAM fold S1001342_01735 PF01612 3'-5' exonuclease S1001342_01736 PF01063 Amino-transferase class IV S1001342_01737 PF02696 Uncharacterized ACR, YdiU/UPF0061 family S1001342_01738 PF00005 ABC transporter S1001342_01739 PF01032 FecCD transport family S1001342_01740 PF00849 RNA pseudouridylate synthase S1001342_01741 PF00140 Sigma-70 factor, region 1.2 S1001342_01741 PF04542 Sigma-70 region 2 S1001342_01741 PF04545 Sigma-70, region 4 S1001342_01742 PF01368 DHH family S1001342_01742 PF17768 RecJ OB domain S1001342_01742 PF02272 DHHA1 domain S1001342_01743 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded S1001342_01744 PF01842 ACT domain S1001342_01744 PF00742 Homoserine dehydrogenase S1001342_01744 PF03447 Homoserine dehydrogenase, NAD binding domain S1001342_01745 PF00155 Aminotransferase class I and II S1001342_01747 PF00574 Clp protease S1001342_01749 PF04055 Radical SAM superfamily S1001342_01749 PF13186 Iron-sulfur cluster-binding domain S1001342_01750 PF05402 Coenzyme PQQ synthesis protein D (PqqD) S1001342_01751 PF03070 TENA/THI-4/PQQC family S1001342_01752 PF12706 Beta-lactamase superfamily domain S1001342_01756 PF00561 alpha/beta hydrolase fold S1001342_01757 PF03372 Endonuclease/Exonuclease/phosphatase family S1001342_01758 PF01521 Iron-sulphur cluster biosynthesis S1001342_01759 PF01966 HD domain S1001342_01759 PF13286 Phosphohydrolase-associated domain S1001342_01760 PF05746 DALR anticodon binding domain S1001342_01760 PF03485 Arginyl tRNA synthetase N terminal domain S1001342_01760 PF00750 tRNA synthetases class I (R) S1001342_01762 PF02616 Segregation and condensation protein ScpA S1001342_01763 PF04079 Segregation and condensation complex subunit ScpB S1001342_01764 PF02416 mttA/Hcf106 family S1001342_01765 PF00902 Sec-independent protein translocase protein (TatC) S1001342_01766 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S1001342_01766 PF02403 Seryl-tRNA synthetase N-terminal domain S1001342_01767 PF00893 Small Multidrug Resistance protein S1001342_01768 PF13098 Thioredoxin-like domain S1001342_01768 PF11412 Disulphide bond corrector protein DsbC S1001342_01768 PF02683 Cytochrome C biogenesis protein transmembrane region S1001342_01795 PF01381 Helix-turn-helix S1001342_01798 PF00436 Single-strand binding protein family S1001342_01802 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) S1001342_01854 PF04632 Fusaric acid resistance protein family S1001342_01855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_01855 PF03466 LysR substrate binding domain S1001342_01867 PF13340 Putative transposase of IS4/5 family (DUF4096) S1001342_01871 PF02630 SCO1/SenC S1001342_01872 PF01494 FAD binding domain S1001342_01873 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S1001342_01873 PF00205 Thiamine pyrophosphate enzyme, central domain S1001342_01873 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S1001342_01876 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) S1001342_01876 PF00128 Alpha amylase, catalytic domain S1001342_01877 PF08323 Starch synthase catalytic domain S1001342_01877 PF00534 Glycosyl transferases group 1 S1001342_01878 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) S1001342_01878 PF00128 Alpha amylase, catalytic domain S1001342_01878 PF02806 Alpha amylase, C-terminal all-beta domain S1001342_01879 PF00128 Alpha amylase, catalytic domain S1001342_01879 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) S1001342_01879 PF11941 Domain of unknown function (DUF3459) S1001342_01880 PF00128 Alpha amylase, catalytic domain S1001342_01881 PF00106 short chain dehydrogenase S1001342_01882 PF01425 Amidase S1001342_01883 PF03466 LysR substrate binding domain S1001342_01883 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_01886 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain S1001342_01886 PF02785 Biotin carboxylase C-terminal domain S1001342_01886 PF00289 Biotin carboxylase, N-terminal domain S1001342_01888 PF00106 short chain dehydrogenase S1001342_01890 PF02626 Carboxyltransferase domain, subdomain A and B S1001342_01891 PF03746 LamB/YcsF family S1001342_01892 PF00892 EamA-like transporter family S1001342_01896 PF01618 MotA/TolQ/ExbB proton channel family S1001342_01897 PF02472 Biopolymer transport protein ExbD/TolR S1001342_01898 PF02472 Biopolymer transport protein ExbD/TolR S1001342_01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_01900 PF03466 LysR substrate binding domain S1001342_01901 PF05726 Pirin C-terminal cupin domain S1001342_01901 PF02678 Pirin S1001342_01902 PF03358 NADPH-dependent FMN reductase S1001342_01904 PF07690 Major Facilitator Superfamily S1001342_01905 PF00171 Aldehyde dehydrogenase family S1001342_01906 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_01908 PF00440 Bacterial regulatory proteins, tetR family S1001342_01908 PF16925 Tetracyclin repressor-like, C-terminal domain S1001342_01910 PF02445 Quinolinate synthetase A protein S1001342_01911 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain S1001342_01911 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain S1001342_01913 PF14403 Circularly permuted ATP-grasp type 2 S1001342_01915 PF10005 zinc-ribbon domain S1001342_01915 PF15887 Putative zinc-binding metallo-peptidase S1001342_01916 PF01565 FAD binding domain S1001342_01916 PF09330 D-lactate dehydrogenase, membrane binding S1001342_01917 PF00171 Aldehyde dehydrogenase family S1001342_01922 PF03884 DNA gyrase inhibitor YacG S1001342_01924 PF02545 Maf-like protein S1001342_01925 PF01176 Translation initiation factor 1A / IF-1 S1001342_01926 PF00815 Histidinol dehydrogenase S1001342_01927 PF01634 ATP phosphoribosyltransferase S1001342_01928 PF12111 Polyribonucleotide phosphorylase C terminal S1001342_01928 PF10150 Ribonuclease E/G family S1001342_01928 PF00575 S1 RNA binding domain S1001342_01929 PF01520 N-acetylmuramoyl-L-alanine amidase S1001342_01933 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_01933 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster S1001342_01934 PF01645 Conserved region in glutamate synthase S1001342_01934 PF01493 GXGXG motif S1001342_01934 PF04898 Glutamate synthase central domain S1001342_01934 PF00310 Glutamine amidotransferases class-II S1001342_01936 PF03109 ABC1 family S1001342_01938 PF02401 LytB protein S1001342_01939 PF01636 Phosphotransferase enzyme family S1001342_01940 PF00075 RNase H S1001342_01943 PF01513 ATP-NAD kinase S1001342_01947 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain S1001342_01947 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S1001342_01947 PF03129 Anticodon binding domain S1001342_01947 PF02824 TGS domain S1001342_01948 PF05198 Translation initiation factor IF-3, N-terminal domain S1001342_01948 PF00707 Translation initiation factor IF-3, C-terminal domain S1001342_01950 PF00512 His Kinase A (phospho-acceptor) domain S1001342_01950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_01951 PF00486 Transcriptional regulatory protein, C terminal S1001342_01951 PF00072 Response regulator receiver domain S1001342_01953 PF00005 ABC transporter S1001342_01953 PF12848 ABC transporter S1001342_01954 PF00334 Nucleoside diphosphate kinase S1001342_01955 PF02310 B12 binding domain S1001342_01955 PF04055 Radical SAM superfamily S1001342_01961 PF00749 tRNA synthetases class I (E and Q), catalytic domain S1001342_01966 PF01042 Endoribonuclease L-PSP S1001342_01967 PF02569 Pantoate-beta-alanine ligase S1001342_01968 PF14579 Helix-hairpin-helix motif S1001342_01968 PF17657 Bacterial DNA polymerase III alpha subunit finger domain S1001342_01968 PF07733 Bacterial DNA polymerase III alpha NTPase domain S1001342_01968 PF02811 PHP domain S1001342_01969 PF04715 Anthranilate synthase component I, N terminal region S1001342_01969 PF00425 chorismate binding enzyme S1001342_01973 PF00355 Rieske [2Fe-2S] domain S1001342_01974 PF00318 Ribosomal protein S2 S1001342_01975 PF00889 Elongation factor TS S1001342_01976 PF02565 Recombination protein O C terminal S1001342_01976 PF11967 Recombination protein O N terminal S1001342_01977 PF03989 DNA gyrase C-terminal domain, beta-propeller S1001342_01977 PF00521 DNA gyrase/topoisomerase IV, subunit A S1001342_01978 PF04376 Arginine-tRNA-protein transferase, N terminus S1001342_01978 PF04377 Arginine-tRNA-protein transferase, C terminus S1001342_01979 PF00490 Delta-aminolevulinic acid dehydratase S1001342_01980 PF13520 Amino acid permease S1001342_01981 PF00464 Serine hydroxymethyltransferase S1001342_01982 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family S1001342_01985 PF00271 Helicase conserved C-terminal domain S1001342_01985 PF00270 DEAD/DEAH box helicase S1001342_01990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain S1001342_01990 PF00205 Thiamine pyrophosphate enzyme, central domain S1001342_01990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain S1001342_01991 PF10369 Small subunit of acetolactate synthase S1001342_01992 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain S1001342_01992 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain S1001342_01993 PF05275 Copper resistance protein B precursor (CopB) S1001342_01994 PF07731 Multicopper oxidase S1001342_01994 PF00394 Multicopper oxidase S1001342_01994 PF07732 Multicopper oxidase S1001342_01996 PF00403 Heavy-metal-associated domain S1001342_01998 PF00857 Isochorismatase family S1001342_01999 PF00749 tRNA synthetases class I (E and Q), catalytic domain S1001342_02002 PF01474 Class-II DAHP synthetase family S1001342_02004 PF01205 Uncharacterized protein family UPF0029 S1001342_02006 PF03618 Kinase/pyrophosphorylase S1001342_02007 PF02896 PEP-utilising enzyme, TIM barrel domain S1001342_02007 PF00391 PEP-utilising enzyme, mobile domain S1001342_02007 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain S1001342_02008 PF12826 Helix-hairpin-helix motif S1001342_02008 PF01653 NAD-dependent DNA ligase adenylation domain S1001342_02008 PF00533 BRCA1 C Terminus (BRCT) domain S1001342_02008 PF03120 NAD-dependent DNA ligase OB-fold domain S1001342_02008 PF03119 NAD-dependent DNA ligase C4 zinc finger domain S1001342_02009 PF02463 RecF/RecN/SMC N terminal domain S1001342_02010 PF13525 Outer membrane lipoprotein S1001342_02011 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase S1001342_02012 PF00091 Tubulin/FtsZ family, GTPase domain S1001342_02012 PF12327 FtsZ family, C-terminal domain S1001342_02013 PF02491 SHS2 domain inserted in FTSA S1001342_02014 PF03799 Cell division protein FtsQ S1001342_02014 PF08478 POTRA domain, FtsQ-type S1001342_02015 PF01820 D-ala D-ala ligase N-terminus S1001342_02015 PF07478 D-ala D-ala ligase C-terminus S1001342_02016 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain S1001342_02016 PF01565 FAD binding domain S1001342_02017 PF02875 Mur ligase family, glutamate ligase domain S1001342_02017 PF01225 Mur ligase family, catalytic domain S1001342_02017 PF08245 Mur ligase middle domain S1001342_02018 PF04101 Glycosyltransferase family 28 C-terminal domain S1001342_02018 PF03033 Glycosyltransferase family 28 N-terminal domain S1001342_02019 PF01098 Cell cycle protein S1001342_02020 PF08245 Mur ligase middle domain S1001342_02020 PF02875 Mur ligase family, glutamate ligase domain S1001342_02021 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 S1001342_02021 PF00953 Glycosyl transferase family 4 S1001342_02022 PF08245 Mur ligase middle domain S1001342_02022 PF02875 Mur ligase family, glutamate ligase domain S1001342_02022 PF01225 Mur ligase family, catalytic domain S1001342_02023 PF01225 Mur ligase family, catalytic domain S1001342_02023 PF02875 Mur ligase family, glutamate ligase domain S1001342_02023 PF08245 Mur ligase middle domain S1001342_02024 PF00905 Penicillin binding protein transpeptidase domain S1001342_02024 PF03717 Penicillin-binding Protein dimerisation domain S1001342_02026 PF01795 MraW methylase family S1001342_02027 PF02381 MraZ protein, putative antitoxin-like S1001342_02029 PF07859 alpha/beta hydrolase fold S1001342_02031 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain S1001342_02031 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain S1001342_02032 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) S1001342_02034 PF00696 Amino acid kinase family S1001342_02034 PF01472 PUA domain S1001342_02035 PF01926 50S ribosome-binding GTPase S1001342_02035 PF01018 GTP1/OBG S1001342_02036 PF01016 Ribosomal L27 protein S1001342_02037 PF00829 Ribosomal prokaryotic L21 protein S1001342_02040 PF01609 Transposase DDE domain S1001342_02042 PF13340 Putative transposase of IS4/5 family (DUF4096) S1001342_02043 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 S1001342_02043 PF00535 Glycosyl transferase family 2 S1001342_02044 PF00535 Glycosyl transferase family 2 S1001342_02047 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I S1001342_02047 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II S1001342_02047 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III S1001342_02047 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain S1001342_02051 PF07859 alpha/beta hydrolase fold S1001342_02054 PF00860 Permease family S1001342_02057 PF03358 NADPH-dependent FMN reductase S1001342_02058 PF00355 Rieske [2Fe-2S] domain S1001342_02058 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal S1001342_02059 PF00032 Cytochrome b(C-terminal)/b6/petD S1001342_02059 PF00033 Cytochrome b/b6/petB S1001342_02059 PF02167 Cytochrome C1 family S1001342_02060 PF02167 Cytochrome C1 family S1001342_02060 PF00033 Cytochrome b/b6/petB S1001342_02060 PF00032 Cytochrome b(C-terminal)/b6/petD S1001342_02061 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region S1001342_02061 PF01872 RibD C-terminal domain S1001342_02062 PF00677 Lumazine binding domain S1001342_02063 PF00925 GTP cyclohydrolase II S1001342_02063 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase S1001342_02064 PF00885 6,7-dimethyl-8-ribityllumazine synthase S1001342_02070 PF13533 Biotin-lipoyl like S1001342_02076 PF00994 Probable molybdopterin binding domain S1001342_02078 PF01227 GTP cyclohydrolase I S1001342_02079 PF04379 ApaG domain S1001342_02080 PF01053 Cys/Met metabolism PLP-dependent enzyme S1001342_02081 PF00483 Nucleotidyl transferase S1001342_02081 PF01050 Mannose-6-phosphate isomerase S1001342_02082 PF00293 NUDIX domain S1001342_02083 PF00355 Rieske [2Fe-2S] domain S1001342_02085 PF02699 Preprotein translocase subunit S1001342_02086 PF18319 PriA DNA helicase Cys-rich region (CRR) domain S1001342_02086 PF17764 3′ DNA-binding domain (3′BD) S1001342_02086 PF00270 DEAD/DEAH box helicase S1001342_02086 PF18074 Primosomal protein N C-terminal domain S1001342_02087 PF00589 Phage integrase family S1001342_02087 PF02899 Phage integrase, N-terminal SAM-like domain S1001342_02088 PF00561 alpha/beta hydrolase fold S1001342_02091 PF00909 Ammonium Transporter Family S1001342_02097 PF13817 IS66 C-terminal element S1001342_02097 PF03050 Transposase IS66 family S1001342_02097 PF13007 Transposase C of IS166 homeodomain S1001342_02097 PF13005 zinc-finger binding domain of transposase IS66 S1001342_02098 PF13005 zinc-finger binding domain of transposase IS66 S1001342_02098 PF13817 IS66 C-terminal element S1001342_02098 PF13007 Transposase C of IS166 homeodomain S1001342_02098 PF03050 Transposase IS66 family S1001342_02100 PF01527 Transposase S1001342_02112 PF00118 TCP-1/cpn60 chaperonin family S1001342_02113 PF00166 Chaperonin 10 Kd subunit S1001342_02114 PF01738 Dienelactone hydrolase family S1001342_02115 PF00313 'Cold-shock' DNA-binding domain S1001342_02116 PF13307 Helicase C-terminal domain S1001342_02116 PF04851 Type III restriction enzyme, res subunit S1001342_02117 PF00459 Inositol monophosphatase family S1001342_02118 PF01132 Elongation factor P (EF-P) OB domain S1001342_02118 PF08207 Elongation factor P (EF-P) KOW-like domain S1001342_02118 PF09285 Elongation factor P, C-terminal S1001342_02120 PF02371 Transposase IS116/IS110/IS902 family S1001342_02120 PF01548 Transposase S1001342_02126 PF09335 SNARE associated Golgi protein S1001342_02128 PF01494 FAD binding domain S1001342_02129 PF06426 Serine acetyltransferase, N-terminal S1001342_02129 PF00132 Bacterial transferase hexapeptide (six repeats) S1001342_02130 PF00543 Nitrogen regulatory protein P-II S1001342_02131 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain S1001342_02131 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain S1001342_02131 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain S1001342_02136 PF00156 Phosphoribosyl transferase domain S1001342_02144 PF03275 UDP-galactopyranose mutase S1001342_02146 PF01527 Transposase S1001342_02148 PF13005 zinc-finger binding domain of transposase IS66 S1001342_02148 PF13007 Transposase C of IS166 homeodomain S1001342_02148 PF03050 Transposase IS66 family S1001342_02148 PF13817 IS66 C-terminal element S1001342_02149 PF00535 Glycosyl transferase family 2 S1001342_02150 PF02542 YgbB family S1001342_02150 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase S1001342_02151 PF01207 Dihydrouridine synthase (Dus) S1001342_02152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_02152 PF00512 His Kinase A (phospho-acceptor) domain S1001342_02152 PF00989 PAS fold S1001342_02153 PF00158 Sigma-54 interaction domain S1001342_02153 PF00072 Response regulator receiver domain S1001342_02153 PF02954 Bacterial regulatory protein, Fis family S1001342_02154 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_02154 PF00672 HAMP domain S1001342_02155 PF00158 Sigma-54 interaction domain S1001342_02155 PF02954 Bacterial regulatory protein, Fis family S1001342_02155 PF00072 Response regulator receiver domain S1001342_02156 PF17209 Hfq protein S1001342_02157 PF16360 GTP-binding GTPase Middle Region S1001342_02157 PF01926 50S ribosome-binding GTPase S1001342_02157 PF13167 GTP-binding GTPase N-terminal S1001342_02158 PF00293 NUDIX domain S1001342_02159 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_02159 PF07724 AAA domain (Cdc48 subfamily) S1001342_02159 PF10431 C-terminal, D2-small domain, of ClpB protein S1001342_02159 PF02861 Clp amino terminal domain, pathogenicity island component S1001342_02159 PF17871 AAA lid domain S1001342_02160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain S1001342_02160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain S1001342_02163 PF01794 Ferric reductase like transmembrane component S1001342_02164 PF00916 Sulfate permease family S1001342_02164 PF01740 STAS domain S1001342_02165 PF02684 Lipid-A-disaccharide synthetase S1001342_02166 PF01502 Phosphoribosyl-AMP cyclohydrolase S1001342_02168 PF00733 Asparagine synthase S1001342_02168 PF13537 Glutamine amidotransferase domain S1001342_02169 PF13439 Glycosyltransferase Family 4 S1001342_02169 PF00534 Glycosyl transferases group 1 S1001342_02173 PF00069 Protein kinase domain S1001342_02173 PF01011 PQQ enzyme repeat S1001342_02173 PF13360 PQQ-like domain S1001342_02173 PF13570 PQQ-like domain S1001342_02174 PF13360 PQQ-like domain S1001342_02175 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal S1001342_02175 PF01926 50S ribosome-binding GTPase S1001342_02176 PF07690 Major Facilitator Superfamily S1001342_02177 PF04107 Glutamate-cysteine ligase family 2(GCS2) S1001342_02178 PF04452 RNA methyltransferase S1001342_02179 PF01040 UbiA prenyltransferase family S1001342_02181 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_02181 PF12002 MgsA AAA+ ATPase C terminal S1001342_02181 PF16193 AAA C-terminal domain S1001342_02182 PF01479 S4 domain S1001342_02182 PF00849 RNA pseudouridylate synthase S1001342_02186 PF02881 SRP54-type protein, helical bundle domain S1001342_02186 PF00448 SRP54-type protein, GTPase domain S1001342_02186 PF02978 Signal peptide binding domain S1001342_02187 PF00886 Ribosomal protein S16 S1001342_02188 PF01782 RimM N-terminal domain S1001342_02189 PF01746 tRNA (Guanine-1)-methyltransferase S1001342_02190 PF01245 Ribosomal protein L19 S1001342_02191 PF00330 Aconitase family (aconitate hydratase) S1001342_02192 PF00694 Aconitase C-terminal domain S1001342_02193 PF00180 Isocitrate/isopropylmalate dehydrogenase S1001342_02194 PF01165 Ribosomal protein S21 S1001342_02195 PF01327 Polypeptide deformylase S1001342_02197 PF12802 MarR family S1001342_02198 PF00486 Transcriptional regulatory protein, C terminal S1001342_02198 PF00072 Response regulator receiver domain S1001342_02199 PF00672 HAMP domain S1001342_02199 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_02199 PF00512 His Kinase A (phospho-acceptor) domain S1001342_02202 PF01783 Ribosomal L32p protein family S1001342_02203 PF02504 Fatty acid synthesis protein S1001342_02204 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal S1001342_02204 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III S1001342_02205 PF00216 Bacterial DNA-binding protein S1001342_02206 PF13411 MerR HTH family regulatory protein S1001342_02208 PF01594 AI-2E family transporter S1001342_02209 PF03023 Lipid II flippase MurJ S1001342_02211 PF00216 Bacterial DNA-binding protein S1001342_02212 PF05443 ROS/MUCR transcriptional regulator protein S1001342_02213 PF03466 LysR substrate binding domain S1001342_02213 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_02214 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_02215 PF01037 Lrp/AsnC ligand binding domain S1001342_02216 PF00535 Glycosyl transferase family 2 S1001342_02218 PF02951 Prokaryotic glutathione synthetase, N-terminal domain S1001342_02218 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain S1001342_02219 PF01209 ubiE/COQ5 methyltransferase family S1001342_02220 PF00115 Cytochrome C and Quinol oxidase polypeptide I S1001342_02221 PF01040 UbiA prenyltransferase family S1001342_02225 PF01523 Putative modulator of DNA gyrase S1001342_02226 PF05193 Peptidase M16 inactive domain S1001342_02226 PF00675 Insulinase (Peptidase family M16) S1001342_02227 PF00291 Pyridoxal-phosphate dependent enzyme S1001342_02227 PF14821 Threonine synthase N terminus S1001342_02229 PF02074 Carboxypeptidase Taq (M32) metallopeptidase S1001342_02231 PF05188 MutS domain II S1001342_02231 PF01624 MutS domain I S1001342_02231 PF00488 MutS domain V S1001342_02231 PF05190 MutS family domain IV S1001342_02231 PF05192 MutS domain III S1001342_02232 PF01966 HD domain S1001342_02232 PF08335 GlnD PII-uridylyltransferase S1001342_02234 PF00005 ABC transporter S1001342_02234 PF00664 ABC transporter transmembrane region S1001342_02236 PF00830 Ribosomal L28 family S1001342_02237 PF03144 Elongation factor Tu domain 2 S1001342_02237 PF03764 Elongation factor G, domain IV S1001342_02237 PF14492 Elongation Factor G, domain II S1001342_02237 PF00679 Elongation factor G C-terminus S1001342_02237 PF00009 Elongation factor Tu GTP binding domain S1001342_02239 PF00311 Phosphoenolpyruvate carboxylase S1001342_02240 PF04286 Protein of unknown function (DUF445) S1001342_02241 PF02082 Transcriptional regulator S1001342_02242 PF01458 Uncharacterized protein family (UPF0051) S1001342_02243 PF00005 ABC transporter S1001342_02244 PF01458 Uncharacterized protein family (UPF0051) S1001342_02245 PF00266 Aminotransferase class-V S1001342_02247 PF01883 Iron-sulfur cluster assembly protein S1001342_02248 PF01521 Iron-sulphur cluster biosynthesis S1001342_02249 PF05958 tRNA (Uracil-5-)-methyltransferase S1001342_02250 PF00271 Helicase conserved C-terminal domain S1001342_02250 PF00270 DEAD/DEAH box helicase S1001342_02252 PF03853 YjeF-related protein N-terminus S1001342_02252 PF01256 Carbohydrate kinase S1001342_02254 PF05697 Bacterial trigger factor protein (TF) S1001342_02254 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S1001342_02254 PF05698 Bacterial trigger factor protein (TF) C-terminus S1001342_02255 PF00574 Clp protease S1001342_02256 PF06689 ClpX C4-type zinc finger S1001342_02256 PF07724 AAA domain (Cdc48 subfamily) S1001342_02256 PF10431 C-terminal, D2-small domain, of ClpB protein S1001342_02257 PF05362 Lon protease (S16) C-terminal proteolytic domain S1001342_02257 PF02190 ATP-dependent protease La (LON) substrate-binding domain S1001342_02257 PF00004 ATPase family associated with various cellular activities (AAA) S1001342_02258 PF00216 Bacterial DNA-binding protein S1001342_02261 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 S1001342_02262 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit S1001342_02263 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit S1001342_02264 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit S1001342_02266 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region S1001342_02266 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit S1001342_02266 PF10531 SLBB domain S1001342_02267 PF00384 Molybdopterin oxidoreductase S1001342_02267 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region S1001342_02267 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal S1001342_02268 PF00146 NADH dehydrogenase S1001342_02269 PF12838 4Fe-4S dicluster domain S1001342_02270 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 S1001342_02271 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L S1001342_02272 PF00361 Proton-conducting membrane transporter S1001342_02272 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus S1001342_02273 PF00361 Proton-conducting membrane transporter S1001342_02274 PF03099 Biotin/lipoate A/B protein ligase family S1001342_02274 PF02237 Biotin protein ligase C terminal domain S1001342_02275 PF03309 Type III pantothenate kinase S1001342_02276 PF12706 Beta-lactamase superfamily domain S1001342_02276 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain S1001342_02276 PF17770 Ribonuclease J C-terminal domain S1001342_02277 PF03129 Anticodon binding domain S1001342_02277 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) S1001342_02278 PF12704 MacB-like periplasmic core domain S1001342_02278 PF02687 FtsX-like permease family S1001342_02279 PF00005 ABC transporter S1001342_02280 PF00255 Glutathione peroxidase S1001342_02283 PF01380 SIS domain S1001342_02284 PF12804 MobA-like NTP transferase domain S1001342_02284 PF14602 Hexapeptide repeat of succinyl-transferase S1001342_02284 PF00132 Bacterial transferase hexapeptide (six repeats) S1001342_02285 PF13419 Haloacid dehalogenase-like hydrolase S1001342_02290 PF00149 Calcineurin-like phosphoesterase S1001342_02293 PF00155 Aminotransferase class I and II S1001342_02295 PF00501 AMP-binding enzyme S1001342_02305 PF00596 Class II Aldolase and Adducin N-terminal domain S1001342_02306 PF03171 2OG-Fe(II) oxygenase superfamily S1001342_02306 PF14226 non-haem dioxygenase in morphine synthesis N-terminal S1001342_02309 PF00005 ABC transporter S1001342_02310 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_02311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_02311 PF03466 LysR substrate binding domain S1001342_02313 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S1001342_02314 PF01546 Peptidase family M20/M25/M40 S1001342_02314 PF07687 Peptidase dimerisation domain S1001342_02315 PF01593 Flavin containing amine oxidoreductase S1001342_02317 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S1001342_02317 PF00034 Cytochrome c S1001342_02318 PF00111 2Fe-2S iron-sulfur cluster binding domain S1001342_02318 PF01799 [2Fe-2S] binding domain S1001342_02319 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase S1001342_02319 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain S1001342_02321 PF01566 Natural resistance-associated macrophage protein S1001342_02322 PF07690 Major Facilitator Superfamily S1001342_02326 PF01609 Transposase DDE domain S1001342_02328 PF00107 Zinc-binding dehydrogenase S1001342_02328 PF08240 Alcohol dehydrogenase GroES-like domain S1001342_02329 PF00593 TonB dependent receptor S1001342_02329 PF07715 TonB-dependent Receptor Plug Domain S1001342_02332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_02332 PF03466 LysR substrate binding domain S1001342_02333 PF12848 ABC transporter S1001342_02333 PF00005 ABC transporter S1001342_02339 PF06826 Predicted Permease Membrane Region S1001342_02339 PF02080 TrkA-C domain S1001342_02340 PF00155 Aminotransferase class I and II S1001342_02341 PF00710 Asparaginase, N-terminal S1001342_02341 PF17763 Glutaminase/Asparaginase C-terminal domain S1001342_02347 PF00593 TonB dependent receptor S1001342_02347 PF07715 TonB-dependent Receptor Plug Domain S1001342_02348 PF18331 PKHD-type hydroxylase C-terminal domain S1001342_02348 PF13640 2OG-Fe(II) oxygenase superfamily S1001342_02349 PF00664 ABC transporter transmembrane region S1001342_02349 PF00005 ABC transporter S1001342_02350 PF00005 ABC transporter S1001342_02350 PF00664 ABC transporter transmembrane region S1001342_02351 PF01654 Cytochrome bd terminal oxidase subunit I S1001342_02352 PF02322 Cytochrome bd terminal oxidase subunit II S1001342_02355 PF07995 Glucose / Sorbosone dehydrogenase S1001342_02356 PF00924 Mechanosensitive ion channel S1001342_02356 PF05552 Conserved TM helix S1001342_02357 PF00593 TonB dependent receptor S1001342_02357 PF07715 TonB-dependent Receptor Plug Domain S1001342_02360 PF13282 Domain of unknown function (DUF4070) S1001342_02360 PF04055 Radical SAM superfamily S1001342_02360 PF02310 B12 binding domain S1001342_02362 PF04632 Fusaric acid resistance protein family S1001342_02363 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion S1001342_02363 PF00529 HlyD membrane-fusion protein of T1SS S1001342_02366 PF03551 Transcriptional regulator PadR-like family S1001342_02368 PF07690 Major Facilitator Superfamily S1001342_02375 PF01609 Transposase DDE domain S1001342_02377 PF04185 Phosphoesterase family S1001342_02377 PF05506 Domain of unknown function (DUF756) S1001342_02380 PF01569 PAP2 superfamily S1001342_02381 PF03060 Nitronate monooxygenase S1001342_02382 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S1001342_02382 PF00005 ABC transporter S1001342_02383 PF08352 Oligopeptide/dipeptide transporter, C-terminal region S1001342_02383 PF00005 ABC transporter S1001342_02384 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_02386 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle S1001342_02387 PF00478 IMP dehydrogenase / GMP reductase domain S1001342_02387 PF00571 CBS domain S1001342_02388 PF01029 NusB family S1001342_02388 PF01189 16S rRNA methyltransferase RsmB/F S1001342_02391 PF00072 Response regulator receiver domain S1001342_02391 PF00486 Transcriptional regulatory protein, C terminal S1001342_02402 PF01381 Helix-turn-helix S1001342_02427 PF00589 Phage integrase family S1001342_02427 PF02899 Phage integrase, N-terminal SAM-like domain S1001342_02436 PF01343 Peptidase family S49 S1001342_02444 PF17482 Phage tail sheath C-terminal domain S1001342_02444 PF04984 Phage tail sheath protein subtilisin-like domain S1001342_02451 PF07409 Phage protein GP46 S1001342_02468 PF00579 tRNA synthetases class I (W and Y) S1001342_02470 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase S1001342_02470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase S1001342_02471 PF00764 Arginosuccinate synthase S1001342_02472 PF04055 Radical SAM superfamily S1001342_02474 PF01728 FtsJ-like methyltransferase S1001342_02474 PF01479 S4 domain S1001342_02475 PF02780 Transketolase, C-terminal domain S1001342_02475 PF02779 Transketolase, pyrimidine binding domain S1001342_02475 PF13292 1-deoxy-D-xylulose-5-phosphate synthase S1001342_02476 PF00348 Polyprenyl synthetase S1001342_02477 PF02609 Exonuclease VII small subunit S1001342_02478 PF01206 Sulfurtransferase TusA S1001342_02479 PF00480 ROK family S1001342_02480 PF01728 FtsJ-like methyltransferase S1001342_02481 PF02541 Ppx/GppA phosphatase family S1001342_02483 PF01568 Molydopterin dinucleotide binding domain S1001342_02483 PF00384 Molybdopterin oxidoreductase S1001342_02483 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S1001342_02484 PF13247 4Fe-4S dicluster domain S1001342_02484 PF09163 Formate dehydrogenase N, transmembrane S1001342_02485 PF01292 Prokaryotic cytochrome b561 S1001342_02486 PF04216 Protein involved in formate dehydrogenase formation S1001342_02487 PF00994 Probable molybdopterin binding domain S1001342_02487 PF03454 MoeA C-terminal region (domain IV) S1001342_02487 PF03453 MoeA N-terminal region (domain I and II) S1001342_02488 PF03205 Molybdopterin guanine dinucleotide synthesis protein B S1001342_02489 PF12804 MobA-like NTP transferase domain S1001342_02490 PF02634 FdhD/NarQ family S1001342_02491 PF14497 Glutathione S-transferase, C-terminal domain S1001342_02491 PF02798 Glutathione S-transferase, N-terminal domain S1001342_02492 PF02659 Putative manganese efflux pump S1001342_02495 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_02495 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster S1001342_02498 PF01515 Phosphate acetyl/butaryl transferase S1001342_02499 PF00871 Acetokinase family S1001342_02501 PF01594 AI-2E family transporter S1001342_02509 PF01011 PQQ enzyme repeat S1001342_02511 PF06505 Activator of aromatic catabolism S1001342_02511 PF02830 V4R domain S1001342_02511 PF00158 Sigma-54 interaction domain S1001342_02511 PF02954 Bacterial regulatory protein, Fis family S1001342_02514 PF00206 Lyase S1001342_02514 PF10415 Fumarase C C-terminus S1001342_02516 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain S1001342_02517 PF02570 Precorrin-8X methylmutase S1001342_02518 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S1001342_02519 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S1001342_02520 PF02571 Precorrin-6x reductase CbiJ/CobK S1001342_02521 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S1001342_02523 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S1001342_02524 PF01888 CbiD S1001342_02525 PF07690 Major Facilitator Superfamily S1001342_02526 PF04399 Glutaredoxin 2, C terminal domain S1001342_02526 PF13417 Glutathione S-transferase, N-terminal domain S1001342_02527 PF05724 Thiopurine S-methyltransferase (TPMT) S1001342_02528 PF00375 Sodium:dicarboxylate symporter family S1001342_02529 PF17755 UvrA DNA-binding domain S1001342_02541 PF00248 Aldo/keto reductase family S1001342_02542 PF03050 Transposase IS66 family S1001342_02542 PF13817 IS66 C-terminal element S1001342_02542 PF13007 Transposase C of IS166 homeodomain S1001342_02542 PF13005 zinc-finger binding domain of transposase IS66 S1001342_02544 PF01527 Transposase S1001342_02545 PF00248 Aldo/keto reductase family S1001342_02549 PF00034 Cytochrome c S1001342_02549 PF13442 Cytochrome C oxidase, cbb3-type, subunit III S1001342_02550 PF01593 Flavin containing amine oxidoreductase S1001342_02551 PF07715 TonB-dependent Receptor Plug Domain S1001342_02551 PF00593 TonB dependent receptor S1001342_02552 PF14602 Hexapeptide repeat of succinyl-transferase S1001342_02552 PF12464 Maltose acetyltransferase S1001342_02554 PF02770 Acyl-CoA dehydrogenase, middle domain S1001342_02554 PF02771 Acyl-CoA dehydrogenase, N-terminal domain S1001342_02554 PF00441 Acyl-CoA dehydrogenase, C-terminal domain S1001342_02555 PF13086 AAA domain S1001342_02555 PF13195 Protein of unknown function (DUF4011) S1001342_02555 PF13087 AAA domain S1001342_02555 PF13087 AAA domain S1001342_02555 PF13086 AAA domain S1001342_02555 PF13195 Protein of unknown function (DUF4011) S1001342_02556 PF07859 alpha/beta hydrolase fold S1001342_02559 PF00873 AcrB/AcrD/AcrF family S1001342_02560 PF02321 Outer membrane efflux protein S1001342_02561 PF00012 Hsp70 protein S1001342_02564 PF06472 ABC transporter transmembrane region 2 S1001342_02564 PF00005 ABC transporter S1001342_02566 PF07715 TonB-dependent Receptor Plug Domain S1001342_02566 PF00593 TonB dependent receptor S1001342_02569 PF08543 Phosphomethylpyrimidine kinase S1001342_02570 PF01979 Amidohydrolase family S1001342_02570 PF13382 Adenine deaminase C-terminal domain S1001342_02571 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain S1001342_02571 PF06165 Glycosyltransferase family 36 S1001342_02571 PF10091 Putative glucoamylase S1001342_02573 PF00472 RF-1 domain S1001342_02574 PF00199 Catalase S1001342_02574 PF18011 C-terminal domain found in long catalases S1001342_02574 PF06628 Catalase-related immune-responsive S1001342_02575 PF01638 HxlR-like helix-turn-helix S1001342_02576 PF00724 NADH:flavin oxidoreductase / NADH oxidase family S1001342_02577 PF00171 Aldehyde dehydrogenase family S1001342_02578 PF06965 Na+/H+ antiporter 1 S1001342_02581 PF17754 MftR C-terminal domain S1001342_02581 PF00440 Bacterial regulatory proteins, tetR family S1001342_02582 PF13249 Squalene-hopene cyclase N-terminal domain S1001342_02582 PF13243 Squalene-hopene cyclase C-terminal domain S1001342_02584 PF13340 Putative transposase of IS4/5 family (DUF4096) S1001342_02586 PF03601 Conserved hypothetical protein 698 S1001342_02592 PF00005 ABC transporter S1001342_02593 PF13533 Biotin-lipoyl like S1001342_02596 PF01618 MotA/TolQ/ExbB proton channel family S1001342_02597 PF02472 Biopolymer transport protein ExbD/TolR S1001342_02598 PF02472 Biopolymer transport protein ExbD/TolR S1001342_02600 PF01979 Amidohydrolase family S1001342_02602 PF13454 FAD-NAD(P)-binding S1001342_02605 PF00576 HIUase/Transthyretin family S1001342_02606 PF00860 Permease family S1001342_02607 PF01799 [2Fe-2S] binding domain S1001342_02607 PF00111 2Fe-2S iron-sulfur cluster binding domain S1001342_02608 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase S1001342_02608 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain S1001342_02610 PF01425 Amidase S1001342_02613 PF00266 Aminotransferase class-V S1001342_02614 PF07687 Peptidase dimerisation domain S1001342_02614 PF01546 Peptidase family M20/M25/M40 S1001342_02617 PF01979 Amidohydrolase family S1001342_02620 PF00005 ABC transporter S1001342_02623 PF01979 Amidohydrolase family S1001342_02624 PF02567 Phenazine biosynthesis-like protein S1001342_02627 PF08274 PhnA Zinc-Ribbon S1001342_02627 PF03831 PhnA domain S1001342_02628 PF08240 Alcohol dehydrogenase GroES-like domain S1001342_02628 PF00107 Zinc-binding dehydrogenase S1001342_02629 PF01204 Trehalase S1001342_02631 PF00072 Response regulator receiver domain S1001342_02632 PF04542 Sigma-70 region 2 S1001342_02632 PF08281 Sigma-70, region 4 S1001342_02633 PF08281 Sigma-70, region 4 S1001342_02633 PF04542 Sigma-70 region 2 S1001342_02635 PF12282 Signal transduction histidine kinase S1001342_02635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_02635 PF07568 Histidine kinase S1001342_02636 PF00005 ABC transporter S1001342_02636 PF00664 ABC transporter transmembrane region S1001342_02637 PF00664 ABC transporter transmembrane region S1001342_02637 PF00005 ABC transporter S1001342_02639 PF00270 DEAD/DEAH box helicase S1001342_02639 PF00570 HRDC domain S1001342_02639 PF16124 RecQ zinc-binding S1001342_02639 PF09382 RQC domain S1001342_02639 PF00271 Helicase conserved C-terminal domain S1001342_02640 PF00455 DeoR C terminal sensor domain S1001342_02640 PF08220 DeoR-like helix-turn-helix domain S1001342_02641 PF01266 FAD dependent oxidoreductase S1001342_02641 PF16901 C-terminal domain of alpha-glycerophosphate oxidase S1001342_02642 PF00230 Major intrinsic protein S1001342_02643 PF00370 FGGY family of carbohydrate kinases, N-terminal domain S1001342_02643 PF02782 FGGY family of carbohydrate kinases, C-terminal domain S1001342_02645 PF03477 ATP cone domain S1001342_02646 PF01029 NusB family S1001342_02647 PF00586 AIR synthase related protein, N-terminal domain S1001342_02647 PF02769 AIR synthase related protein, C-terminal domain S1001342_02649 PF00106 short chain dehydrogenase S1001342_02655 PF02321 Outer membrane efflux protein S1001342_02657 PF00133 tRNA synthetases class I (I, L, M and V) S1001342_02657 PF10458 Valyl tRNA synthetase tRNA binding arm S1001342_02657 PF08264 Anticodon-binding domain of tRNA S1001342_02658 PF01625 Peptide methionine sulfoxide reductase S1001342_02659 PF00005 ABC transporter S1001342_02660 PF00528 Binding-protein-dependent transport system inner membrane component S1001342_02661 PF00692 dUTPase S1001342_02662 PF04127 DNA / pantothenate metabolism flavoprotein S1001342_02662 PF02441 Flavoprotein S1001342_02663 PF01209 ubiE/COQ5 methyltransferase family S1001342_02664 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain S1001342_02664 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain S1001342_02664 PF06827 Zinc finger found in FPG and IleRS S1001342_02665 PF01649 Ribosomal protein S20 S1001342_02666 PF03389 MobA/MobL family S1001342_02668 PF13784 Fic/DOC family N-terminal S1001342_02668 PF02661 Fic/DOC family S1001342_02671 PF12146 Serine aminopeptidase, S33 S1001342_02673 PF01609 Transposase DDE domain S1001342_02675 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system S1001342_02680 PF02796 Helix-turn-helix domain of resolvase S1001342_02680 PF00239 Resolvase, N terminal domain S1001342_02684 PF13700 Domain of unknown function (DUF4158) S1001342_02684 PF01526 Tn3 transposase DDE domain S1001342_02689 PF03389 MobA/MobL family S1001342_02691 PF02661 Fic/DOC family S1001342_02691 PF13784 Fic/DOC family N-terminal S1001342_02694 PF12146 Serine aminopeptidase, S33 S1001342_02696 PF01609 Transposase DDE domain S1001342_02702 PF01925 Sulfite exporter TauE/SafE S1001342_02703 PF01527 Transposase S1001342_02705 PF02534 Type IV secretory system Conjugative DNA transfer S1001342_02707 PF02322 Cytochrome bd terminal oxidase subunit II S1001342_02708 PF01654 Cytochrome bd terminal oxidase subunit I S1001342_02713 PF00107 Zinc-binding dehydrogenase S1001342_02713 PF13823 Alcohol dehydrogenase GroES-associated S1001342_02713 PF08240 Alcohol dehydrogenase GroES-like domain S1001342_02714 PF01609 Transposase DDE domain S1001342_02721 PF02371 Transposase IS116/IS110/IS902 family S1001342_02721 PF01548 Transposase S1001342_02722 PF01548 Transposase S1001342_02722 PF02371 Transposase IS116/IS110/IS902 family S1001342_02731 PF01609 Transposase DDE domain S1001342_02733 PF02082 Transcriptional regulator S1001342_02734 PF00042 Globin S1001342_02734 PF00175 Oxidoreductase NAD-binding domain S1001342_02734 PF00970 Oxidoreductase FAD-binding domain S1001342_02740 PF00115 Cytochrome C and Quinol oxidase polypeptide I S1001342_02741 PF01609 Transposase DDE domain S1001342_02756 PF01717 Cobalamin-independent synthase, Catalytic domain S1001342_02756 PF08267 Cobalamin-independent synthase, N-terminal domain S1001342_02757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_02757 PF03466 LysR substrate binding domain S1001342_02758 PF13340 Putative transposase of IS4/5 family (DUF4096) S1001342_02761 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system S1001342_02763 PF03358 NADPH-dependent FMN reductase S1001342_02764 PF02040 Arsenical pump membrane protein S1001342_02765 PF03960 ArsC family S1001342_02767 PF02384 N-6 DNA Methylase S1001342_02769 PF01909 Nucleotidyltransferase domain S1001342_02773 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system S1001342_02776 PF02371 Transposase IS116/IS110/IS902 family S1001342_02776 PF01548 Transposase S1001342_02777 PF02371 Transposase IS116/IS110/IS902 family S1001342_02777 PF01548 Transposase S1001342_02787 PF02082 Transcriptional regulator S1001342_02788 PF09278 MerR, DNA binding S1001342_02788 PF00376 MerR family regulatory protein S1001342_02792 PF00873 AcrB/AcrD/AcrF family S1001342_02795 PF03960 ArsC family S1001342_02796 PF02040 Arsenical pump membrane protein S1001342_02797 PF03358 NADPH-dependent FMN reductase S1001342_02801 PF13276 HTH-like domain S1001342_02801 PF13333 Integrase core domain S1001342_02801 PF00665 Integrase core domain S1001342_02802 PF01527 Transposase S1001342_02803 PF01850 PIN domain S1001342_02804 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin S1001342_02814 PF00216 Bacterial DNA-binding protein S1001342_02824 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system S1001342_02825 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin S1001342_02827 PF01548 Transposase S1001342_02827 PF02371 Transposase IS116/IS110/IS902 family S1001342_02828 PF01548 Transposase S1001342_02828 PF02371 Transposase IS116/IS110/IS902 family S1001342_02831 PF02899 Phage integrase, N-terminal SAM-like domain S1001342_02831 PF00589 Phage integrase family S1001342_02834 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain S1001342_02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_02845 PF03466 LysR substrate binding domain S1001342_02847 PF16177 Acetyl-coenzyme A synthetase N-terminus S1001342_02847 PF00501 AMP-binding enzyme S1001342_02847 PF13193 AMP-binding enzyme C-terminal domain S1001342_02850 PF00534 Glycosyl transferases group 1 S1001342_02850 PF13439 Glycosyltransferase Family 4 S1001342_02851 PF00586 AIR synthase related protein, N-terminal domain S1001342_02851 PF02769 AIR synthase related protein, C-terminal domain S1001342_02854 PF00795 Carbon-nitrogen hydrolase S1001342_02856 PF00392 Bacterial regulatory proteins, gntR family S1001342_02856 PF00155 Aminotransferase class I and II S1001342_02858 PF03466 LysR substrate binding domain S1001342_02858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family S1001342_02859 PF07690 Major Facilitator Superfamily S1001342_02868 PF00873 AcrB/AcrD/AcrF family S1001342_02869 PF00486 Transcriptional regulatory protein, C terminal S1001342_02869 PF00072 Response regulator receiver domain S1001342_02870 PF00512 His Kinase A (phospho-acceptor) domain S1001342_02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_02870 PF08521 Two-component sensor kinase N-terminal S1001342_02872 PF07690 Major Facilitator Superfamily S1001342_02874 PF18267 Rubredoxin NAD+ reductase C-terminal domain S1001342_02874 PF04324 BFD-like [2Fe-2S] binding domain S1001342_02874 PF13806 Rieske-like [2Fe-2S] domain S1001342_02874 PF07992 Pyridine nucleotide-disulphide oxidoreductase S1001342_02874 PF01077 Nitrite and sulphite reductase 4Fe-4S domain S1001342_02874 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain S1001342_02875 PF00384 Molybdopterin oxidoreductase S1001342_02875 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S1001342_02875 PF04324 BFD-like [2Fe-2S] binding domain S1001342_02875 PF01568 Molydopterin dinucleotide binding domain S1001342_02877 PF13340 Putative transposase of IS4/5 family (DUF4096) S1001342_02880 PF01609 Transposase DDE domain S1001342_02881 PF04879 Molybdopterin oxidoreductase Fe4S4 domain S1001342_02881 PF00384 Molybdopterin oxidoreductase S1001342_02881 PF01568 Molydopterin dinucleotide binding domain S1001342_02883 PF00667 FAD binding domain S1001342_02883 PF00175 Oxidoreductase NAD-binding domain S1001342_02883 PF00258 Flavodoxin S1001342_02885 PF00005 ABC transporter S1001342_02887 PF01527 Transposase S1001342_02890 PF00171 Aldehyde dehydrogenase family S1001342_02892 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin S1001342_02893 PF05199 GMC oxidoreductase S1001342_02893 PF00732 GMC oxidoreductase S1001342_02894 PF01546 Peptidase family M20/M25/M40 S1001342_02894 PF07687 Peptidase dimerisation domain S1001342_02895 PF00465 Iron-containing alcohol dehydrogenase S1001342_02896 PF00171 Aldehyde dehydrogenase family S1001342_02902 PF02082 Transcriptional regulator S1001342_02904 PF00106 short chain dehydrogenase S1001342_02906 PF00072 Response regulator receiver domain S1001342_02906 PF00486 Transcriptional regulatory protein, C terminal S1001342_02907 PF13493 Domain of unknown function (DUF4118) S1001342_02907 PF13492 GAF domain S1001342_02907 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase S1001342_02907 PF00512 His Kinase A (phospho-acceptor) domain S1001342_02907 PF02702 Osmosensitive K+ channel His kinase sensor domain S1001342_02908 PF02669 K+-transporting ATPase, c chain S1001342_02910 PF03814 Potassium-transporting ATPase A subunit S1001342_02915 PF00171 Aldehyde dehydrogenase family S1001342_02916 PF00465 Iron-containing alcohol dehydrogenase S1001342_02917 PF00440 Bacterial regulatory proteins, tetR family S1001342_02917 PF16925 Tetracyclin repressor-like, C-terminal domain S1001342_02919 PF00665 Integrase core domain S1001342_02919 PF13333 Integrase core domain S1001342_02919 PF13276 HTH-like domain S1001342_02920 PF01527 Transposase S1001342_02921 PF00665 Integrase core domain S1001342_02922 PF01695 IstB-like ATP binding protein S1001342_02925 PF02705 K+ potassium transporter S1001342_02926 PF13333 Integrase core domain S1001342_02926 PF00665 Integrase core domain S1001342_02926 PF13276 HTH-like domain S1001342_02927 PF01527 Transposase S1001342_02929 PF00239 Resolvase, N terminal domain S1001342_02930 PF02371 Transposase IS116/IS110/IS902 family S1001342_02930 PF01548 Transposase S1001342_02931 PF00239 Resolvase, N terminal domain S1001342_02936 PF00196 Bacterial regulatory proteins, luxR family S1001342_02936 PF03472 Autoinducer binding domain S1001342_02942 PF02630 SCO1/SenC S1001342_02943 PF02384 N-6 DNA Methylase S1001342_02945 PF01909 Nucleotidyltransferase domain S1001342_02946 PF01420 Type I restriction modification DNA specificity domain S1001342_02947 PF11867 Domain of unknown function (DUF3387) S1001342_02947 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) S1001342_02947 PF18766 SWI2/SNF2 ATPase S1001342_02951 PF05443 ROS/MUCR transcriptional regulator protein S1001342_02955 PF01548 Transposase S1001342_02955 PF02371 Transposase IS116/IS110/IS902 family S1001342_02956 PF01548 Transposase S1001342_02956 PF02371 Transposase IS116/IS110/IS902 family S1001342_02958 PF00239 Resolvase, N terminal domain S1001342_02958 PF02796 Helix-turn-helix domain of resolvase S1001342_02959 PF01925 Sulfite exporter TauE/SafE S1001342_02960 PF01609 Transposase DDE domain S1001342_02964 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system S1001342_02967 PF01548 Transposase S1001342_02967 PF02371 Transposase IS116/IS110/IS902 family S1001342_02974 PF04966 Carbohydrate-selective porin, OprB family S1001342_02975 PF06472 ABC transporter transmembrane region 2 S1001342_02975 PF00005 ABC transporter S1001342_02976 PF01325 Iron dependent repressor, N-terminal DNA binding domain S1001342_02976 PF02742 Iron dependent repressor, metal binding and dimerisation domain S1001342_02977 PF01566 Natural resistance-associated macrophage protein S1001342_02978 PF01609 Transposase DDE domain S1001342_02981 PF01609 Transposase DDE domain S1001342_02982 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system S1001342_02986 PF13340 Putative transposase of IS4/5 family (DUF4096) S1001342_02988 PF01844 HNH endonuclease S1001342_02991 PF02371 Transposase IS116/IS110/IS902 family S1001342_02991 PF01548 Transposase S1001342_02994 PF01548 Transposase S1001342_02994 PF02371 Transposase IS116/IS110/IS902 family S1001342_02995 PF02371 Transposase IS116/IS110/IS902 family S1001342_02995 PF01548 Transposase S1001342_02997 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin S1001342_02998 PF01850 PIN domain S1001342_03000 PF01845 CcdB protein S1001342_03003 PF13614 AAA domain S1001342_03004 PF17762 HTH domain found in ParB protein S1001342_03004 PF02195 ParB-like nuclease domain S1001342_03012 PF08401 Domain of unknown function (DUF1738) S1001342_03012 PF18818 Metallopeptidase superfamily domain S1001342_03015 PF00436 Single-strand binding protein family S1001342_03019 PF00580 UvrD/REP helicase N-terminal domain S1001342_03019 PF13361 UvrD-like helicase C-terminal domain S1001342_03024 PF08892 YqcI/YcgG family S1001342_03027 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain S1001342_03027 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain S1001342_03029 PF01527 Transposase S1001342_03030 PF00665 Integrase core domain S1001342_03030 PF13333 Integrase core domain S1001342_03030 PF13276 HTH-like domain S1001342_03031 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain S1001342_03031 PF13538 UvrD-like helicase C-terminal domain S1001342_03031 PF14490 Helix-hairpin-helix containing domain S1001342_03032 PF13361 UvrD-like helicase C-terminal domain S1001342_03032 PF00580 UvrD/REP helicase N-terminal domain S1001342_03037 PF02899 Phage integrase, N-terminal SAM-like domain S1001342_03037 PF00589 Phage integrase family S1001342_03038 PF01527 Transposase S1001342_03039 PF00665 Integrase core domain S1001342_03039 PF13333 Integrase core domain S1001342_03039 PF13276 HTH-like domain S1001342_03048 PF05443 ROS/MUCR transcriptional regulator protein S1001342_03055 PF00436 Single-strand binding protein family S1001342_03059 PF01850 PIN domain S1001342_03069 PF00216 Bacterial DNA-binding protein S1001342_03083 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain S1001342_03083 PF00437 Type II/IV secretion system protein S1001342_03087 PF05016 ParE toxin of type II toxin-antitoxin system, parDE S1001342_03107 PF13098 Thioredoxin-like domain S1001342_03109 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) S1001342_03110 PF03428 Replication protein C N-terminal domain S1001342_03110 PF11800 Replication protein C C-terminal region S1001342_03112 PF02661 Fic/DOC family S1001342_03115 PF01757 Acyltransferase family S1001342_03116 PF01609 Transposase DDE domain S1001342_03118 PF02371 Transposase IS116/IS110/IS902 family S1001342_03118 PF01548 Transposase S1001342_03121 PF01527 Transposase S1001342_03122 PF01844 HNH endonuclease S1001342_03128 PF13333 Integrase core domain S1001342_03128 PF00665 Integrase core domain S1001342_03128 PF13276 HTH-like domain S1001342_03129 PF01527 Transposase S1001342_03134 PF02371 Transposase IS116/IS110/IS902 family S1001342_03134 PF01548 Transposase S1001342_03135 PF01548 Transposase S1001342_03135 PF02371 Transposase IS116/IS110/IS902 family S1001342_03136 PF07690 Major Facilitator Superfamily S1001342_03137 PF01888 CbiD S1001342_03138 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases S1001342_03140 PF01527 Transposase S1001342_03141 PF13276 HTH-like domain S1001342_03141 PF00665 Integrase core domain S1001342_03141 PF13333 Integrase core domain S1001342_03144 PF05443 ROS/MUCR transcriptional regulator protein S1001342_03153 PF11867 Domain of unknown function (DUF3387) S1001342_03153 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) S1001342_03153 PF18766 SWI2/SNF2 ATPase S1001342_03154 PF01420 Type I restriction modification DNA specificity domain S1001342_03155 PF01909 Nucleotidyltransferase domain S1001342_03157 PF02384 N-6 DNA Methylase S1001342_03165 PF00440 Bacterial regulatory proteins, tetR family S1001342_03165 PF16925 Tetracyclin repressor-like, C-terminal domain S1001342_03169 PF03389 MobA/MobL family S1001342_03169 PF17841 BID domain of Bartonella effector protein (Bep) S1001342_03169 PF01443 Viral (Superfamily 1) RNA helicase S1001342_03171 PF01850 PIN domain S1001342_03174 PF00239 Resolvase, N terminal domain S1001342_03174 PF02796 Helix-turn-helix domain of resolvase S1001342_03178 PF02796 Helix-turn-helix domain of resolvase S1001342_03178 PF00239 Resolvase, N terminal domain S1001342_03179 PF01526 Tn3 transposase DDE domain S1001342_03179 PF13700 Domain of unknown function (DUF4158) S1001342_03180 PF00239 Resolvase, N terminal domain S1001342_03180 PF02796 Helix-turn-helix domain of resolvase S1001342_03184 PF07282 Putative transposase DNA-binding domain S1001342_03184 PF01385 Probable transposase S1001342_03184 PF12323 Helix-turn-helix domain S1001342_03207 PF01555 DNA methylase S1001342_03215 PF04865 Baseplate J-like protein S1001342_03224 PF05016 ParE toxin of type II toxin-antitoxin system, parDE S1001342_03226 PF05016 ParE toxin of type II toxin-antitoxin system, parDE S1001342_03227 PF04221 RelB antitoxin