CPF11_00070	PWY-5663	tetrahydrobiopterin biosynthesis I
CPF11_00070	PWY-5664	tetrahydrobiopterin biosynthesis II
CPF11_00070	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CPF11_00070	PWY-6703	preQ<sub>0</sub> biosynthesis
CPF11_00070	PWY-6983	tetrahydrobiopterin biosynthesis III
CPF11_00070	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CPF11_00070	PWY-7852	CPF11_00070
CPF11_00660	PWY-5874	heme degradation
CPF11_00700	PWY-5169	cyanurate degradation
CPF11_00700	PWY-5703	urea degradation I
CPF11_00700	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CPF11_00835	PWY-6910	hydroxymethylpyrimidine salvage
CPF11_00835	PWY-7356	thiamin salvage IV (yeast)
CPF11_00835	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CPF11_00890	PWY-6098	diploterol and cycloartenol biosynthesis
CPF11_00890	PWY-7072	hopanoid biosynthesis (bacteria)
CPF11_00950	PWY-5497	purine nucleobases degradation II (anaerobic)
CPF11_00950	PWY-6606	guanosine nucleotides degradation II
CPF11_00950	PWY-6608	guanosine nucleotides degradation III
CPF11_00950	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CPF11_00970	PWY-5691	urate degradation to allantoin I
CPF11_00970	PWY-7394	urate degradation to allantoin II
CPF11_00970	PWY-7849	CPF11_00970
CPF11_00975	PWY-5691	urate degradation to allantoin I
CPF11_00975	PWY-7394	urate degradation to allantoin II
CPF11_00975	PWY-7849	CPF11_00975
CPF11_00985	PWY-5497	purine nucleobases degradation II (anaerobic)
CPF11_00985	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CPF11_00985	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CPF11_00985	PWY-6596	adenosine nucleotides degradation I
CPF11_00985	PWY-6606	guanosine nucleotides degradation II
CPF11_00985	PWY-6607	guanosine nucleotides degradation I
CPF11_00985	PWY-6608	guanosine nucleotides degradation III
CPF11_00985	PWY-6999	theophylline degradation
CPF11_00990	PWY-5497	purine nucleobases degradation II (anaerobic)
CPF11_00990	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CPF11_00990	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CPF11_00990	PWY-6596	adenosine nucleotides degradation I
CPF11_00990	PWY-6606	guanosine nucleotides degradation II
CPF11_00990	PWY-6607	guanosine nucleotides degradation I
CPF11_00990	PWY-6608	guanosine nucleotides degradation III
CPF11_00990	PWY-6999	theophylline degradation
CPF11_01000	PWY-5169	cyanurate degradation
CPF11_01000	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CPF11_01015	PWY-6832	2-aminoethylphosphonate degradation II
CPF11_01070	PWY-6654	phosphopantothenate biosynthesis III
CPF11_01085	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CPF11_01085	PWY-3162	L-tryptophan degradation V (side chain pathway)
CPF11_01085	PWY-5057	L-valine degradation II
CPF11_01085	PWY-5076	L-leucine degradation III
CPF11_01085	PWY-5078	L-isoleucine degradation II
CPF11_01085	PWY-5079	L-phenylalanine degradation III
CPF11_01085	PWY-5082	L-methionine degradation III
CPF11_01085	PWY-5480	pyruvate fermentation to ethanol I
CPF11_01085	PWY-5486	pyruvate fermentation to ethanol II
CPF11_01085	PWY-5751	phenylethanol biosynthesis
CPF11_01085	PWY-6313	serotonin degradation
CPF11_01085	PWY-6333	acetaldehyde biosynthesis I
CPF11_01085	PWY-6342	noradrenaline and adrenaline degradation
CPF11_01085	PWY-6587	pyruvate fermentation to ethanol III
CPF11_01085	PWY-6802	salidroside biosynthesis
CPF11_01085	PWY-6871	3-methylbutanol biosynthesis
CPF11_01085	PWY-7013	L-1,2-propanediol degradation
CPF11_01085	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CPF11_01085	PWY-7118	chitin degradation to ethanol
CPF11_01085	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CPF11_01085	PWY-7798	CPF11_01085
CPF11_01150	PWY-4261	glycerol degradation I
CPF11_01150	PWY-6118	glycerol-3-phosphate shuttle
CPF11_01150	PWY-6952	glycerophosphodiester degradation
CPF11_01160	PWY-4261	glycerol degradation I
CPF11_01180	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CPF11_01180	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CPF11_01180	PWY-6896	thiamin salvage I
CPF11_01180	PWY-6897	thiamin salvage II
CPF11_01255	PWY-7851	CPF11_01255
CPF11_01260	PWY-5839	menaquinol-7 biosynthesis
CPF11_01260	PWY-5844	menaquinol-9 biosynthesis
CPF11_01260	PWY-5849	menaquinol-6 biosynthesis
CPF11_01260	PWY-5890	menaquinol-10 biosynthesis
CPF11_01260	PWY-5891	menaquinol-11 biosynthesis
CPF11_01260	PWY-5892	menaquinol-12 biosynthesis
CPF11_01260	PWY-5895	menaquinol-13 biosynthesis
CPF11_01295	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CPF11_01295	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CPF11_01300	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CPF11_01300	PWY-7177	UTP and CTP dephosphorylation II
CPF11_01300	PWY-7185	UTP and CTP dephosphorylation I
CPF11_01310	PWY-1042	glycolysis IV (plant cytosol)
CPF11_01310	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPF11_01310	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPF11_01310	PWY-7003	glycerol degradation to butanol
CPF11_01320	PWY-5958	acridone alkaloid biosynthesis
CPF11_01320	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CPF11_01320	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CPF11_01325	PWY-5958	acridone alkaloid biosynthesis
CPF11_01325	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CPF11_01325	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CPF11_01340	PWY-6823	molybdenum cofactor biosynthesis
CPF11_01360	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CPF11_01360	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CPF11_01365	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CPF11_01365	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CPF11_01385	PWY-5269	cardiolipin biosynthesis II
CPF11_01385	PWY-5668	cardiolipin biosynthesis I
CPF11_01385	PWY-7817	CPF11_01385
CPF11_01400	PWY-6123	inosine-5'-phosphate biosynthesis I
CPF11_01400	PWY-6124	inosine-5'-phosphate biosynthesis II
CPF11_01400	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPF11_01400	PWY-7234	inosine-5'-phosphate biosynthesis III
CPF11_01405	PWY-6123	inosine-5'-phosphate biosynthesis I
CPF11_01405	PWY-6124	inosine-5'-phosphate biosynthesis II
CPF11_01405	PWY-7234	inosine-5'-phosphate biosynthesis III
CPF11_01410	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CPF11_01410	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CPF11_01410	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CPF11_01420	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CPF11_01420	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CPF11_01420	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CPF11_01425	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CPF11_01425	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CPF11_01425	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CPF11_01495	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CPF11_01500	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CPF11_01505	PWY-2941	L-lysine biosynthesis II
CPF11_01505	PWY-2942	L-lysine biosynthesis III
CPF11_01505	PWY-5097	L-lysine biosynthesis VI
CPF11_01545	PWY-4381	fatty acid biosynthesis initiation I
CPF11_01545	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CPF11_01545	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CPF11_01550	PWY-5367	petroselinate biosynthesis
CPF11_01550	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CPF11_01550	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CPF11_01550	PWY-5989	stearate biosynthesis II (bacteria and plants)
CPF11_01550	PWY-5994	palmitate biosynthesis I (animals and fungi)
CPF11_01550	PWY-6113	superpathway of mycolate biosynthesis
CPF11_01550	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CPF11_01550	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CPF11_01550	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CPF11_01550	PWY-7663	gondoate biosynthesis (anaerobic)
CPF11_01550	PWY-7664	oleate biosynthesis IV (anaerobic)
CPF11_01550	PWY-7858	CPF11_01550
CPF11_01550	PWYG-321	mycolate biosynthesis
CPF11_01590	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
CPF11_01600	PWY-6683	sulfate reduction III (assimilatory)
CPF11_01610	PWY-5278	sulfite oxidation III
CPF11_01610	PWY-5340	sulfate activation for sulfonation
CPF11_01610	PWY-6683	sulfate reduction III (assimilatory)
CPF11_01610	PWY-6932	selenate reduction
CPF11_01615	PWY-5278	sulfite oxidation III
CPF11_01615	PWY-5340	sulfate activation for sulfonation
CPF11_01615	PWY-6683	sulfate reduction III (assimilatory)
CPF11_01615	PWY-6932	selenate reduction
CPF11_01630	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CPF11_01635	PWY-6703	preQ<sub>0</sub> biosynthesis
CPF11_01640	PWY-6703	preQ<sub>0</sub> biosynthesis
CPF11_01650	PWY-7254	TCA cycle VII (acetate-producers)
CPF11_01660	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPF11_01665	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CPF11_01665	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CPF11_01665	PWY-5989	stearate biosynthesis II (bacteria and plants)
CPF11_01665	PWY-6113	superpathway of mycolate biosynthesis
CPF11_01665	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CPF11_01665	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CPF11_01665	PWY-7663	gondoate biosynthesis (anaerobic)
CPF11_01665	PWY-7664	oleate biosynthesis IV (anaerobic)
CPF11_01665	PWY-7858	CPF11_01665
CPF11_01665	PWYG-321	mycolate biosynthesis
CPF11_01670	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CPF11_01670	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CPF11_01700	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPF11_01700	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPF11_01700	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPF11_01700	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CPF11_01700	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CPF11_01700	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CPF11_01705	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPF11_01705	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPF11_01735	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CPF11_01790	PWY-723	alkylnitronates degradation
CPF11_01795	PWY-2941	L-lysine biosynthesis II
CPF11_01795	PWY-2942	L-lysine biosynthesis III
CPF11_01795	PWY-5097	L-lysine biosynthesis VI
CPF11_01795	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CPF11_01795	PWY-6559	spermidine biosynthesis II
CPF11_01795	PWY-6562	norspermidine biosynthesis
CPF11_01795	PWY-7153	grixazone biosynthesis
CPF11_01795	PWY-7977	CPF11_01795
CPF11_01800	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CPF11_01800	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CPF11_01800	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CPF11_01800	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CPF11_01800	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
CPF11_01800	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
CPF11_01800	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
CPF11_01800	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CPF11_01800	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CPF11_01800	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
CPF11_01835	PWY-6823	molybdenum cofactor biosynthesis
CPF11_01840	PWY-6749	CMP-legionaminate biosynthesis I
CPF11_01845	PWY-3801	sucrose degradation II (sucrose synthase)
CPF11_01845	PWY-6527	stachyose degradation
CPF11_01845	PWY-7238	sucrose biosynthesis II
CPF11_01845	PWY-7343	UDP-glucose biosynthesis
CPF11_01845	PWY-7817	CPF11_01845
CPF11_01855	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CPF11_01855	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CPF11_01875	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CPF11_01880	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CPF11_01915	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CPF11_01915	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CPF11_01915	PWY-6897	thiamin salvage II
CPF11_01915	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CPF11_01915	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CPF11_01915	PWY-7356	thiamin salvage IV (yeast)
CPF11_01915	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CPF11_01920	PWY-6891	thiazole biosynthesis II (Bacillus)
CPF11_01920	PWY-6892	thiazole biosynthesis I (E. coli)
CPF11_01930	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CPF11_01930	PWY-7806	CPF11_01930
CPF11_01940	PWY-1042	glycolysis IV (plant cytosol)
CPF11_01940	PWY-1622	formaldehyde assimilation I (serine pathway)
CPF11_01940	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CPF11_01940	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPF11_01940	PWY-5723	Rubisco shunt
CPF11_01940	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPF11_01940	PWY-6886	1-butanol autotrophic biosynthesis
CPF11_01940	PWY-6901	superpathway of glucose and xylose degradation
CPF11_01940	PWY-7003	glycerol degradation to butanol
CPF11_01940	PWY-7124	ethylene biosynthesis V (engineered)
CPF11_01940	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CPF11_01955	PWY-6823	molybdenum cofactor biosynthesis
CPF11_01965	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CPF11_01985	PWY-6823	molybdenum cofactor biosynthesis
CPF11_01985	PWY-7887	CPF11_01985
CPF11_02000	PWY-5269	cardiolipin biosynthesis II
CPF11_02000	PWY-5668	cardiolipin biosynthesis I
CPF11_02000	PWY-7817	CPF11_02000
CPF11_02010	PWY-7533	gliotoxin biosynthesis
CPF11_02080	PWY-3461	L-tyrosine biosynthesis II
CPF11_02080	PWY-3462	L-phenylalanine biosynthesis II
CPF11_02080	PWY-6120	L-tyrosine biosynthesis III
CPF11_02080	PWY-6627	salinosporamide A biosynthesis
CPF11_02080	PWY-7626	bacilysin biosynthesis
CPF11_02100	PWY-5686	UMP biosynthesis
CPF11_02100	PWY-7790	CPF11_02100
CPF11_02100	PWY-7791	CPF11_02100
CPF11_02105	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPF11_02105	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPF11_02120	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPF11_02120	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPF11_02120	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CPF11_02120	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CPF11_02120	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPF11_02120	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPF11_02120	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPF11_02120	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CPF11_02125	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPF11_02125	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPF11_02125	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CPF11_02125	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CPF11_02125	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPF11_02125	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPF11_02125	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPF11_02125	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CPF11_02180	PWY-6123	inosine-5'-phosphate biosynthesis I
CPF11_02180	PWY-7234	inosine-5'-phosphate biosynthesis III
CPF11_02285	PWY-6531	mannitol cycle
CPF11_02355	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CPF11_02490	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_02490	PWY-5686	UMP biosynthesis
CPF11_02490	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPF11_02490	PWY-7790	CPF11_02490
CPF11_02490	PWY-7791	CPF11_02490
CPF11_02495	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_02495	PWY-5686	UMP biosynthesis
CPF11_02495	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPF11_02495	PWY-7790	CPF11_02495
CPF11_02495	PWY-7791	CPF11_02495
CPF11_02510	PWY-1042	glycolysis IV (plant cytosol)
CPF11_02510	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CPF11_02510	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPF11_02510	PWY-5723	Rubisco shunt
CPF11_02510	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPF11_02510	PWY-6886	1-butanol autotrophic biosynthesis
CPF11_02510	PWY-6901	superpathway of glucose and xylose degradation
CPF11_02510	PWY-7003	glycerol degradation to butanol
CPF11_02510	PWY-7124	ethylene biosynthesis V (engineered)
CPF11_02510	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CPF11_02675	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPF11_02910	PWY-7801	CPF11_02910
CPF11_03045	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CPF11_03045	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CPF11_03045	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CPF11_03050	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CPF11_03050	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CPF11_03060	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPF11_03060	PWY-5723	Rubisco shunt
CPF11_03085	PWY-7851	CPF11_03085
CPF11_03090	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPF11_03110	PWY-4983	L-citrulline-nitric oxide cycle
CPF11_03110	PWY-4984	urea cycle
CPF11_03110	PWY-5	canavanine biosynthesis
CPF11_03110	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_03110	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPF11_03115	PWY-2941	L-lysine biosynthesis II
CPF11_03115	PWY-2942	L-lysine biosynthesis III
CPF11_03115	PWY-5097	L-lysine biosynthesis VI
CPF11_03125	PWY-3821	galactose degradation III
CPF11_03125	PWY-6317	galactose degradation I (Leloir pathway)
CPF11_03125	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CPF11_03125	PWY-6527	stachyose degradation
CPF11_03125	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CPF11_03125	PWY-7344	UDP-D-galactose biosynthesis
CPF11_03135	PWY-3162	L-tryptophan degradation V (side chain pathway)
CPF11_03135	PWY-5057	L-valine degradation II
CPF11_03135	PWY-5076	L-leucine degradation III
CPF11_03135	PWY-5078	L-isoleucine degradation II
CPF11_03135	PWY-5079	L-phenylalanine degradation III
CPF11_03135	PWY-5082	L-methionine degradation III
CPF11_03135	PWY-5480	pyruvate fermentation to ethanol I
CPF11_03135	PWY-5486	pyruvate fermentation to ethanol II
CPF11_03135	PWY-5751	phenylethanol biosynthesis
CPF11_03135	PWY-6313	serotonin degradation
CPF11_03135	PWY-6333	acetaldehyde biosynthesis I
CPF11_03135	PWY-6342	noradrenaline and adrenaline degradation
CPF11_03135	PWY-6587	pyruvate fermentation to ethanol III
CPF11_03135	PWY-6802	salidroside biosynthesis
CPF11_03135	PWY-6871	3-methylbutanol biosynthesis
CPF11_03135	PWY-7013	L-1,2-propanediol degradation
CPF11_03135	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CPF11_03135	PWY-7118	chitin degradation to ethanol
CPF11_03135	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CPF11_03150	PWY-6654	phosphopantothenate biosynthesis III
CPF11_03455	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CPF11_03495	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPF11_03495	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CPF11_03500	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPF11_03500	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CPF11_03525	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPF11_03535	PWY-4381	fatty acid biosynthesis initiation I
CPF11_03535	PWY-5743	3-hydroxypropanoate cycle
CPF11_03535	PWY-5744	glyoxylate assimilation
CPF11_03535	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CPF11_03535	PWY-6722	candicidin biosynthesis
CPF11_03550	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPF11_03550	PWY-6164	3-dehydroquinate biosynthesis I
CPF11_03570	PWY-5669	phosphatidylethanolamine biosynthesis I
CPF11_03615	PWY-5386	methylglyoxal degradation I
CPF11_03630	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CPF11_03645	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CPF11_03645	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CPF11_03650	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CPF11_03655	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CPF11_03675	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPF11_03680	PWY-5686	UMP biosynthesis
CPF11_03680	PWY-7790	CPF11_03680
CPF11_03680	PWY-7791	CPF11_03680
CPF11_03725	PWY-6936	seleno-amino acid biosynthesis
CPF11_03770	PWY-7884	CPF11_03770
CPF11_03780	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CPF11_03780	PWY-6167	flavin biosynthesis II (archaea)
CPF11_03780	PWY-6168	flavin biosynthesis III (fungi)
CPF11_03780	PWY-7863	CPF11_03780
CPF11_03790	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CPF11_03790	PWY-5389	3-methylthiopropanoate biosynthesis
CPF11_03795	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CPF11_03820	PWY-4981	L-proline biosynthesis II (from arginine)
CPF11_03820	PWY-4984	urea cycle
CPF11_03820	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPF11_03925	PWY-5108	L-isoleucine biosynthesis V
CPF11_03925	PWY-5132	humulone biosynthesis
CPF11_03925	PWY-5133	cohumulone biosynthesis
CPF11_03925	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CPF11_03925	PWY-7118	chitin degradation to ethanol
CPF11_03925	PWY-7857	CPF11_03925
CPF11_03940	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CPF11_03940	PWY-6853	ethylene biosynthesis II (microbes)
CPF11_03940	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CPF11_04010	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CPF11_04055	PWY-5963	thio-molybdenum cofactor biosynthesis
CPF11_04115	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_04115	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPF11_04145	PWY-5386	methylglyoxal degradation I
CPF11_04160	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CPF11_04160	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CPF11_04160	PWY-5989	stearate biosynthesis II (bacteria and plants)
CPF11_04160	PWY-5994	palmitate biosynthesis I (animals and fungi)
CPF11_04160	PWY-6113	superpathway of mycolate biosynthesis
CPF11_04160	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CPF11_04160	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CPF11_04160	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CPF11_04160	PWY-7663	gondoate biosynthesis (anaerobic)
CPF11_04160	PWY-7664	oleate biosynthesis IV (anaerobic)
CPF11_04160	PWY-7858	CPF11_04160
CPF11_04160	PWYG-321	mycolate biosynthesis
CPF11_04185	PWY-7560	methylerythritol phosphate pathway II
CPF11_04190	PWY-5667	CDP-diacylglycerol biosynthesis I
CPF11_04190	PWY-5981	CDP-diacylglycerol biosynthesis III
CPF11_04190	PWY-7817	CPF11_04190
CPF11_04225	PWY-6012	acyl carrier protein metabolism I
CPF11_04225	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CPF11_04225	PWY-6289	petrobactin biosynthesis
CPF11_04240	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CPF11_04240	PWY-6148	tetrahydromethanopterin biosynthesis
CPF11_04240	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CPF11_04240	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CPF11_04240	PWY-7852	CPF11_04240
CPF11_04240	PWY-7853	CPF11_04240
CPF11_04250	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CPF11_04250	PWY-5743	3-hydroxypropanoate cycle
CPF11_04250	PWY-5744	glyoxylate assimilation
CPF11_04250	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CPF11_04250	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPF11_04250	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CPF11_04250	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CPF11_04265	PWY-5344	L-homocysteine biosynthesis
CPF11_04300	PWY-381	nitrate reduction II (assimilatory)
CPF11_04300	PWY-5675	nitrate reduction V (assimilatory)
CPF11_04300	PWY-6549	L-glutamine biosynthesis III
CPF11_04300	PWY-6963	ammonia assimilation cycle I
CPF11_04300	PWY-6964	ammonia assimilation cycle II
CPF11_04335	PWY-5913	TCA cycle VI (obligate autotrophs)
CPF11_04335	PWY-6549	L-glutamine biosynthesis III
CPF11_04335	PWY-6728	methylaspartate cycle
CPF11_04335	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPF11_04335	PWY-7124	ethylene biosynthesis V (engineered)
CPF11_04335	PWY-7254	TCA cycle VII (acetate-producers)
CPF11_04335	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CPF11_04340	PWY-101	photosynthesis light reactions
CPF11_04375	PWY-1042	glycolysis IV (plant cytosol)
CPF11_04375	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CPF11_04375	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPF11_04375	PWY-5723	Rubisco shunt
CPF11_04375	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPF11_04375	PWY-6886	1-butanol autotrophic biosynthesis
CPF11_04375	PWY-6901	superpathway of glucose and xylose degradation
CPF11_04375	PWY-7003	glycerol degradation to butanol
CPF11_04375	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CPF11_04375	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPF11_04590	PWY-2201	folate transformations I
CPF11_04590	PWY-5497	purine nucleobases degradation II (anaerobic)
CPF11_04590	PWY-7909	CPF11_04590
CPF11_05025	PWY-6967	methylamine degradation I
CPF11_05040	PWY-6967	methylamine degradation I
CPF11_05075	PWY-5667	CDP-diacylglycerol biosynthesis I
CPF11_05075	PWY-5981	CDP-diacylglycerol biosynthesis III
CPF11_05075	PWY-7902	CPF11_05075
CPF11_05090	PWY-5913	TCA cycle VI (obligate autotrophs)
CPF11_05090	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CPF11_05090	PWY-6638	sulfolactate degradation III
CPF11_05090	PWY-6642	(<i>R</i>)-cysteate degradation
CPF11_05090	PWY-6643	coenzyme M biosynthesis II
CPF11_05090	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CPF11_05090	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CPF11_05090	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPF11_05140	PWY-6902	chitin degradation II
CPF11_05140	PWY-7822	CPF11_05140
CPF11_05140	PWY-7883	CPF11_05140
CPF11_05255	PWY-7560	methylerythritol phosphate pathway II
CPF11_05295	PWY-6891	thiazole biosynthesis II (Bacillus)
CPF11_05295	PWY-6892	thiazole biosynthesis I (E. coli)
CPF11_05295	PWY-7560	methylerythritol phosphate pathway II
CPF11_05305	PWY-5129	sphingolipid biosynthesis (plants)
CPF11_05305	PWY-7836	CPF11_05305
CPF11_05305	PWY-7838	CPF11_05305
CPF11_05305	PWY-7839	CPF11_05305
CPF11_05305	PWY-7841	CPF11_05305
CPF11_05335	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPF11_05335	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPF11_05335	PWY-7953	CPF11_05335
CPF11_05370	PWY-5101	L-isoleucine biosynthesis II
CPF11_05370	PWY-5103	L-isoleucine biosynthesis III
CPF11_05370	PWY-5104	L-isoleucine biosynthesis IV
CPF11_05370	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CPF11_05370	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CPF11_05370	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CPF11_05370	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CPF11_05375	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CPF11_05400	PWY-5381	pyridine nucleotide cycling (plants)
CPF11_05400	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CPF11_05400	PWY-7761	CPF11_05400
CPF11_05405	PWY-3341	L-proline biosynthesis III
CPF11_05405	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CPF11_05415	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CPF11_05465	PWY-5108	L-isoleucine biosynthesis V
CPF11_05465	PWY-5132	humulone biosynthesis
CPF11_05465	PWY-5133	cohumulone biosynthesis
CPF11_05465	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CPF11_05465	PWY-7118	chitin degradation to ethanol
CPF11_05465	PWY-7857	CPF11_05465
CPF11_05470	PWY-5747	2-methylcitrate cycle II
CPF11_05670	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_05670	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPF11_05745	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CPF11_05805	PWY-7980	CPF11_05805
CPF11_05865	PWY-6123	inosine-5'-phosphate biosynthesis I
CPF11_05865	PWY-6124	inosine-5'-phosphate biosynthesis II
CPF11_05865	PWY-7234	inosine-5'-phosphate biosynthesis III
CPF11_05875	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CPF11_05875	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CPF11_05885	PWY-2941	L-lysine biosynthesis II
CPF11_05885	PWY-2942	L-lysine biosynthesis III
CPF11_05885	PWY-5097	L-lysine biosynthesis VI
CPF11_05955	PWY-7799	CPF11_05955
CPF11_05955	PWY-7800	CPF11_05955
CPF11_05960	PWY-4041	&gamma;-glutamyl cycle
CPF11_05960	PWY-4061	glutathione-mediated detoxification I
CPF11_05960	PWY-5826	hypoglycin biosynthesis
CPF11_05960	PWY-6842	glutathione-mediated detoxification II
CPF11_05960	PWY-7112	4-hydroxy-2-nonenal detoxification
CPF11_05960	PWY-7559	glutathione degradation (DUG pathway - yeast)
CPF11_05990	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CPF11_05990	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CPF11_05990	PWY-6897	thiamin salvage II
CPF11_05990	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CPF11_05990	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CPF11_05990	PWY-7356	thiamin salvage IV (yeast)
CPF11_05990	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CPF11_06040	PWY-5686	UMP biosynthesis
CPF11_06170	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CPF11_06170	PWY-2201	folate transformations I
CPF11_06170	PWY-3841	folate transformations II
CPF11_06170	PWY-5030	L-histidine degradation III
CPF11_06170	PWY-5497	purine nucleobases degradation II (anaerobic)
CPF11_06170	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CPF11_06170	PWY-7909	CPF11_06170
CPF11_06175	PWY-2201	folate transformations I
CPF11_06175	PWY-3841	folate transformations II
CPF11_06195	PWY-6700	queuosine biosynthesis
CPF11_06200	PWY-6700	queuosine biosynthesis
CPF11_06205	PWY-6700	queuosine biosynthesis
CPF11_06245	PWY-7805	CPF11_06245
CPF11_06245	PWY-7807	CPF11_06245
CPF11_06290	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CPF11_06300	PWY-5152	leucodelphinidin biosynthesis
CPF11_06310	PWY-7072	hopanoid biosynthesis (bacteria)
CPF11_06320	PWY-7072	hopanoid biosynthesis (bacteria)
CPF11_06325	PWY-6098	diploterol and cycloartenol biosynthesis
CPF11_06325	PWY-7072	hopanoid biosynthesis (bacteria)
CPF11_06585	PWY-7142	cyanide detoxification II
CPF11_06725	PWY-6700	queuosine biosynthesis
CPF11_06735	PWY-7980	CPF11_06735
CPF11_06745	PWY-7980	CPF11_06745
CPF11_06820	PWY-5686	UMP biosynthesis
CPF11_06820	PWY-7790	CPF11_06820
CPF11_06820	PWY-7791	CPF11_06820
CPF11_06840	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPF11_06840	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CPF11_06840	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPF11_06880	PWY-3781	aerobic respiration I (cytochrome c)
CPF11_06880	PWY-4521	arsenite oxidation I (respiratory)
CPF11_06880	PWY-6692	Fe(II) oxidation
CPF11_06880	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CPF11_06880	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
CPF11_06930	PWY-6605	adenine and adenosine salvage II
CPF11_06930	PWY-6610	adenine and adenosine salvage IV
CPF11_06930	PWY-7805	CPF11_06930
CPF11_06930	PWY-7807	CPF11_06930
CPF11_06955	PWY-6871	3-methylbutanol biosynthesis
CPF11_06975	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPF11_06975	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPF11_06980	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPF11_06980	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CPF11_06980	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CPF11_06980	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPF11_07015	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPF11_07015	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CPF11_07015	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CPF11_07015	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPF11_07050	PWY-7205	CMP phosphorylation
CPF11_07055	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPF11_07065	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CPF11_07065	PWY-6148	tetrahydromethanopterin biosynthesis
CPF11_07065	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CPF11_07065	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CPF11_07105	PWY-6906	chitin derivatives degradation
CPF11_07105	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CPF11_07105	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CPF11_07145	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CPF11_07145	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
CPF11_07155	PWY-6891	thiazole biosynthesis II (Bacillus)
CPF11_07155	PWY-6892	thiazole biosynthesis I (E. coli)
CPF11_07155	PWY-7560	methylerythritol phosphate pathway II
CPF11_07160	PWY-1042	glycolysis IV (plant cytosol)
CPF11_07160	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPF11_07160	PWY-6901	superpathway of glucose and xylose degradation
CPF11_07160	PWY-7003	glycerol degradation to butanol
CPF11_07165	PWY-1042	glycolysis IV (plant cytosol)
CPF11_07165	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPF11_07165	PWY-6886	1-butanol autotrophic biosynthesis
CPF11_07165	PWY-6901	superpathway of glucose and xylose degradation
CPF11_07165	PWY-7003	glycerol degradation to butanol
CPF11_07180	PWY-3781	aerobic respiration I (cytochrome c)
CPF11_07180	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CPF11_07180	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CPF11_07180	PWY-5690	TCA cycle II (plants and fungi)
CPF11_07180	PWY-6728	methylaspartate cycle
CPF11_07180	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPF11_07180	PWY-7254	TCA cycle VII (acetate-producers)
CPF11_07180	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CPF11_07185	PWY-3781	aerobic respiration I (cytochrome c)
CPF11_07185	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CPF11_07185	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CPF11_07185	PWY-5690	TCA cycle II (plants and fungi)
CPF11_07185	PWY-6728	methylaspartate cycle
CPF11_07185	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPF11_07185	PWY-7254	TCA cycle VII (acetate-producers)
CPF11_07185	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CPF11_07200	PWY-2941	L-lysine biosynthesis II
CPF11_07200	PWY-2942	L-lysine biosynthesis III
CPF11_07200	PWY-5097	L-lysine biosynthesis VI
CPF11_07200	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_07200	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CPF11_07200	PWY-6559	spermidine biosynthesis II
CPF11_07200	PWY-6562	norspermidine biosynthesis
CPF11_07200	PWY-7153	grixazone biosynthesis
CPF11_07200	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPF11_07200	PWY-7977	CPF11_07200
CPF11_07250	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CPF11_07250	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CPF11_07250	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CPF11_07285	PWY-6167	flavin biosynthesis II (archaea)
CPF11_07330	PWY-2723	trehalose degradation V
CPF11_07330	PWY-3801	sucrose degradation II (sucrose synthase)
CPF11_07330	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CPF11_07330	PWY-5661	GDP-glucose biosynthesis
CPF11_07330	PWY-5940	streptomycin biosynthesis
CPF11_07330	PWY-5941	glycogen degradation II (eukaryotic)
CPF11_07330	PWY-622	starch biosynthesis
CPF11_07330	PWY-6317	galactose degradation I (Leloir pathway)
CPF11_07330	PWY-6731	starch degradation III
CPF11_07330	PWY-6737	starch degradation V
CPF11_07330	PWY-6749	CMP-legionaminate biosynthesis I
CPF11_07330	PWY-6981	chitin biosynthesis
CPF11_07330	PWY-7238	sucrose biosynthesis II
CPF11_07330	PWY-7343	UDP-glucose biosynthesis
CPF11_07330	PWY-7900	CPF11_07330
CPF11_07330	PWY-7902	CPF11_07330
CPF11_07345	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CPF11_07345	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CPF11_07345	PWY-7766	CPF11_07345
CPF11_07550	PWY-5381	pyridine nucleotide cycling (plants)
CPF11_07550	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CPF11_07550	PWY-7761	CPF11_07550
CPF11_07600	PWY-3341	L-proline biosynthesis III
CPF11_07600	PWY-4981	L-proline biosynthesis II (from arginine)
CPF11_07600	PWY-6344	L-ornithine degradation II (Stickland reaction)
CPF11_07640	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_07720	PWY-6614	tetrahydrofolate biosynthesis
CPF11_07725	PWY-6749	CMP-legionaminate biosynthesis I
CPF11_07755	PWY-4381	fatty acid biosynthesis initiation I
CPF11_07755	PWY-5743	3-hydroxypropanoate cycle
CPF11_07755	PWY-5744	glyoxylate assimilation
CPF11_07755	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CPF11_07755	PWY-6722	candicidin biosynthesis
CPF11_07760	PWY-2161	folate polyglutamylation
CPF11_07785	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CPF11_07790	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CPF11_07800	PWY-7887	CPF11_07800
CPF11_07800	PWY-7892	CPF11_07800
CPF11_07840	PWY-3221	dTDP-L-rhamnose biosynthesis II
CPF11_07840	PWY-6808	dTDP-D-forosamine biosynthesis
CPF11_07840	PWY-6942	dTDP-D-desosamine biosynthesis
CPF11_07840	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CPF11_07840	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CPF11_07840	PWY-6974	dTDP-L-olivose biosynthesis
CPF11_07840	PWY-6976	dTDP-L-mycarose biosynthesis
CPF11_07840	PWY-7104	dTDP-L-megosamine biosynthesis
CPF11_07840	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CPF11_07840	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CPF11_07840	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CPF11_07840	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CPF11_07840	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CPF11_07840	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CPF11_07840	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CPF11_07840	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CPF11_07840	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CPF11_07840	PWY-7688	CPF11_07840
CPF11_07840	PWY-7814	CPF11_07840
CPF11_07845	PWY-3221	dTDP-L-rhamnose biosynthesis II
CPF11_07845	PWY-6808	dTDP-D-forosamine biosynthesis
CPF11_07845	PWY-6942	dTDP-D-desosamine biosynthesis
CPF11_07845	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CPF11_07845	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CPF11_07845	PWY-6974	dTDP-L-olivose biosynthesis
CPF11_07845	PWY-6976	dTDP-L-mycarose biosynthesis
CPF11_07845	PWY-7104	dTDP-L-megosamine biosynthesis
CPF11_07845	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CPF11_07845	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CPF11_07845	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CPF11_07845	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CPF11_07845	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CPF11_07845	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CPF11_07845	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CPF11_07845	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CPF11_07845	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CPF11_07845	PWY-7688	CPF11_07845
CPF11_07845	PWY-7814	CPF11_07845
CPF11_07935	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CPF11_08065	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CPF11_08135	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CPF11_08155	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CPF11_08155	PWY-6416	quinate degradation II
CPF11_08155	PWY-6707	gallate biosynthesis
CPF11_08255	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPF11_08275	PWY-5392	reductive TCA cycle II
CPF11_08275	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CPF11_08275	PWY-5690	TCA cycle II (plants and fungi)
CPF11_08275	PWY-5913	TCA cycle VI (obligate autotrophs)
CPF11_08275	PWY-6728	methylaspartate cycle
CPF11_08275	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPF11_08275	PWY-7254	TCA cycle VII (acetate-producers)
CPF11_08275	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CPF11_08290	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPF11_08340	PWY-5101	L-isoleucine biosynthesis II
CPF11_08340	PWY-5103	L-isoleucine biosynthesis III
CPF11_08340	PWY-5104	L-isoleucine biosynthesis IV
CPF11_08340	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CPF11_08410	PWY-2941	L-lysine biosynthesis II
CPF11_08410	PWY-5097	L-lysine biosynthesis VI
CPF11_08480	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CPF11_08480	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CPF11_08480	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CPF11_08480	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CPF11_08495	PWY-2201	folate transformations I
CPF11_08495	PWY-3841	folate transformations II
CPF11_08495	PWY-7977	CPF11_08495
CPF11_08585	PWY-7851	CPF11_08585
CPF11_08610	PWY-6834	spermidine biosynthesis III
CPF11_08790	PWY-5033	nicotinate degradation II
CPF11_08790	PWY-6993	nicotine degradation II (pyrrolidine pathway)
CPF11_08790	PWY-7128	nicotine degradation III (VPP pathway)
CPF11_08790	PWY-722	nicotinate degradation I
CPF11_08830	PWY-4202	arsenate detoxification I (glutaredoxin)
CPF11_08830	PWY-4621	arsenate detoxification II (glutaredoxin)
CPF11_08910	PWY-5704	urea degradation II
CPF11_08915	PWY-5704	urea degradation II
CPF11_08920	PWY-5704	urea degradation II
CPF11_09040	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPF11_09070	PWY-5530	sorbitol biosynthesis II
CPF11_09075	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPF11_09075	PWY-5723	Rubisco shunt
CPF11_09080	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CPF11_09080	PWY-6855	chitin degradation I (archaea)
CPF11_09080	PWY-6906	chitin derivatives degradation
CPF11_09095	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPF11_09095	PWY-3801	sucrose degradation II (sucrose synthase)
CPF11_09095	PWY-5054	sorbitol biosynthesis I
CPF11_09095	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CPF11_09095	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CPF11_09095	PWY-5659	GDP-mannose biosynthesis
CPF11_09095	PWY-5723	Rubisco shunt
CPF11_09095	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPF11_09095	PWY-621	sucrose degradation III (sucrose invertase)
CPF11_09095	PWY-622	starch biosynthesis
CPF11_09095	PWY-6981	chitin biosynthesis
CPF11_09095	PWY-6992	1,5-anhydrofructose degradation
CPF11_09095	PWY-7238	sucrose biosynthesis II
CPF11_09095	PWY-7347	sucrose biosynthesis III
CPF11_09095	PWY-7385	1,3-propanediol biosynthesis (engineered)
CPF11_09100	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CPF11_09100	PWY-5723	Rubisco shunt
CPF11_09100	PWY-6891	thiazole biosynthesis II (Bacillus)
CPF11_09100	PWY-6892	thiazole biosynthesis I (E. coli)
CPF11_09100	PWY-6901	superpathway of glucose and xylose degradation
CPF11_09100	PWY-7560	methylerythritol phosphate pathway II
CPF11_09270	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CPF11_09290	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CPF11_09290	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CPF11_09385	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CPF11_09395	PWY-5443	aminopropanol phosphate biosynthesis I
CPF11_09400	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CPF11_09400	PWY-6269	adenosylcobalamin salvage from cobinamide II
CPF11_09400	PWY-7961	CPF11_09400
CPF11_09400	PWY-7963	CPF11_09400
CPF11_09400	PWY-7964	CPF11_09400
CPF11_09400	PWY-7965	CPF11_09400
CPF11_09400	PWY-7966	CPF11_09400
CPF11_09400	PWY-7967	CPF11_09400
CPF11_09400	PWY-7968	CPF11_09400
CPF11_09400	PWY-7969	CPF11_09400
CPF11_09400	PWY-7970	CPF11_09400
CPF11_09400	PWY-7975	CPF11_09400
CPF11_09405	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CPF11_09405	PWY-6269	adenosylcobalamin salvage from cobinamide II
CPF11_09405	PWY-7964	CPF11_09405
CPF11_09405	PWY-7965	CPF11_09405
CPF11_09405	PWY-7966	CPF11_09405
CPF11_09405	PWY-7967	CPF11_09405
CPF11_09405	PWY-7968	CPF11_09405
CPF11_09405	PWY-7969	CPF11_09405
CPF11_09405	PWY-7970	CPF11_09405
CPF11_09410	PWY-6269	adenosylcobalamin salvage from cobinamide II
CPF11_09410	PWY-7962	CPF11_09410
CPF11_09410	PWY-7971	CPF11_09410
CPF11_09410	PWY-7972	CPF11_09410
CPF11_09695	PWY-5194	siroheme biosynthesis
CPF11_09695	PWY-5196	factor 430 biosynthesis
CPF11_09695	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CPF11_09760	PWY-7883	CPF11_09760
CPF11_09795	PWY-5686	UMP biosynthesis
CPF11_09795	PWY-7790	CPF11_09795
CPF11_09795	PWY-7791	CPF11_09795
CPF11_09880	PWY-5057	L-valine degradation II
CPF11_09880	PWY-5076	L-leucine degradation III
CPF11_09880	PWY-5078	L-isoleucine degradation II
CPF11_09880	PWY-5101	L-isoleucine biosynthesis II
CPF11_09880	PWY-5103	L-isoleucine biosynthesis III
CPF11_09880	PWY-5104	L-isoleucine biosynthesis IV
CPF11_09880	PWY-5108	L-isoleucine biosynthesis V
CPF11_09880	PWY-7767	CPF11_09880
CPF11_09910	PWY-7805	CPF11_09910
CPF11_09910	PWY-7807	CPF11_09910
CPF11_09915	PWY-5484	glycolysis II (from fructose 6-phosphate)
CPF11_09945	PWY-6823	molybdenum cofactor biosynthesis
CPF11_09955	PWY-6420	pyrroloquinoline quinone biosynthesis
CPF11_10030	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CPF11_10130	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CPF11_10190	PWY-5316	nicotine biosynthesis
CPF11_10190	PWY-7342	superpathway of nicotine biosynthesis
CPF11_10195	PWY-5316	nicotine biosynthesis
CPF11_10195	PWY-5381	pyridine nucleotide cycling (plants)
CPF11_10195	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CPF11_10195	PWY-7342	superpathway of nicotine biosynthesis
CPF11_10220	PWY-5386	methylglyoxal degradation I
CPF11_10220	PWY-7425	2-chloroacrylate degradation I
CPF11_10330	PWY-7560	methylerythritol phosphate pathway II
CPF11_10335	PWY-702	L-methionine biosynthesis II
CPF11_10355	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CPF11_10355	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CPF11_10355	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CPF11_10410	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CPF11_10410	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CPF11_10410	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPF11_10410	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPF11_10410	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CPF11_10410	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CPF11_10410	PWY-7205	CMP phosphorylation
CPF11_10410	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CPF11_10410	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPF11_10410	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CPF11_10410	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CPF11_10410	PWY-7224	purine deoxyribonucleosides salvage
CPF11_10410	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CPF11_10410	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CPF11_10480	PWY-5958	acridone alkaloid biosynthesis
CPF11_10480	PWY-6543	4-aminobenzoate biosynthesis
CPF11_10480	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CPF11_10480	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CPF11_10525	PWY-7802	CPF11_10525
CPF11_10530	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPF11_10530	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CPF11_10540	PWY-1622	formaldehyde assimilation I (serine pathway)
CPF11_10540	PWY-181	photorespiration
CPF11_10540	PWY-2161	folate polyglutamylation
CPF11_10540	PWY-2201	folate transformations I
CPF11_10540	PWY-3661	glycine betaine degradation I
CPF11_10540	PWY-3661-1	glycine betaine degradation II (mammalian)
CPF11_10540	PWY-3841	folate transformations II
CPF11_10540	PWY-5497	purine nucleobases degradation II (anaerobic)
CPF11_10580	PWY-2781	<i>cis</i>-zeatin biosynthesis
CPF11_10585	PWY-5101	L-isoleucine biosynthesis II
CPF11_10585	PWY-5103	L-isoleucine biosynthesis III
CPF11_10585	PWY-5104	L-isoleucine biosynthesis IV
CPF11_10585	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CPF11_10585	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CPF11_10585	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CPF11_10585	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CPF11_10590	PWY-5101	L-isoleucine biosynthesis II
CPF11_10590	PWY-5103	L-isoleucine biosynthesis III
CPF11_10590	PWY-5104	L-isoleucine biosynthesis IV
CPF11_10590	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CPF11_10590	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CPF11_10590	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CPF11_10590	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CPF11_10595	PWY-5103	L-isoleucine biosynthesis III
CPF11_10595	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CPF11_10630	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CPF11_10640	PWY-5381	pyridine nucleotide cycling (plants)
CPF11_10645	PWY-6164	3-dehydroquinate biosynthesis I
CPF11_10670	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CPF11_10670	PWY-6549	L-glutamine biosynthesis III
CPF11_10670	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CPF11_10670	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CPF11_10710	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPF11_10710	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPF11_10710	PWY-7953	CPF11_10710
CPF11_10715	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPF11_10715	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPF11_10715	PWY-7953	CPF11_10715
CPF11_10720	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPF11_10720	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPF11_10720	PWY-7953	CPF11_10720
CPF11_10725	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPF11_10725	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CPF11_10725	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CPF11_10725	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPF11_10730	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPF11_10730	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CPF11_10730	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CPF11_10730	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPF11_10735	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPF11_10735	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPF11_10740	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CPF11_10740	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CPF11_10740	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CPF11_10745	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CPF11_10745	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CPF11_10745	PWY-7953	CPF11_10745
CPF11_10790	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CPF11_10805	PWY-3341	L-proline biosynthesis III
CPF11_10805	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CPF11_11105	PWY-3781	aerobic respiration I (cytochrome c)
CPF11_11105	PWY-6692	Fe(II) oxidation
CPF11_11105	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CPF11_11105	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CPF11_11120	PWY-7991	CPF11_11120
CPF11_11125	PWY-6167	flavin biosynthesis II (archaea)
CPF11_11125	PWY-6168	flavin biosynthesis III (fungi)
CPF11_11125	PWY-7980	CPF11_11125
CPF11_11130	PWY-6167	flavin biosynthesis II (archaea)
CPF11_11130	PWY-6168	flavin biosynthesis III (fungi)
CPF11_11130	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CPF11_11130	PWY-7991	CPF11_11130
CPF11_11135	PWY-6167	flavin biosynthesis II (archaea)
CPF11_11135	PWY-6168	flavin biosynthesis III (fungi)
CPF11_11205	PWY-5663	tetrahydrobiopterin biosynthesis I
CPF11_11205	PWY-5664	tetrahydrobiopterin biosynthesis II
CPF11_11205	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CPF11_11205	PWY-6703	preQ<sub>0</sub> biosynthesis
CPF11_11205	PWY-6983	tetrahydrobiopterin biosynthesis III
CPF11_11205	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CPF11_11205	PWY-7852	CPF11_11205
CPF11_11220	PWY-5659	GDP-mannose biosynthesis
CPF11_11220	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CPF11_11225	PWY-6502	oxidized GTP and dGTP detoxification
CPF11_11355	PWY-2301	<i>myo</i>-inositol biosynthesis
CPF11_11355	PWY-4702	phytate degradation I
CPF11_11355	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CPF11_11370	PWY-3821	galactose degradation III
CPF11_11370	PWY-6317	galactose degradation I (Leloir pathway)
CPF11_11370	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CPF11_11370	PWY-6527	stachyose degradation
CPF11_11370	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CPF11_11370	PWY-7344	UDP-D-galactose biosynthesis
CPF11_11385	PWY-6936	seleno-amino acid biosynthesis
CPF11_11385	PWY-7274	D-cycloserine biosynthesis
CPF11_11385	PWY-7870	CPF11_11385
CPF11_11395	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CPF11_11395	PWY-7820	CPF11_11395
CPF11_11410	PWY-7183	pyrimidine nucleobases salvage I
CPF11_11500	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CPF11_11500	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CPF11_11500	PWY-7622	UDP-galactofuranose biosynthesis
CPF11_11525	PWY-7560	methylerythritol phosphate pathway II
CPF11_11575	PWY-6854	ethylene biosynthesis III (microbes)
CPF11_11660	PWY-6840	homoglutathione biosynthesis
CPF11_11660	PWY-7255	ergothioneine biosynthesis I (bacteria)
CPF11_11720	PWY-6829	tRNA methylation (yeast)
CPF11_11720	PWY-7285	methylwyosine biosynthesis
CPF11_11720	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CPF11_11740	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CPF11_11795	PWY-4381	fatty acid biosynthesis initiation I
CPF11_11880	PWY-3781	aerobic respiration I (cytochrome c)
CPF11_11880	PWY-4521	arsenite oxidation I (respiratory)
CPF11_11880	PWY-6692	Fe(II) oxidation
CPF11_11880	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CPF11_11970	PWY-1622	formaldehyde assimilation I (serine pathway)
CPF11_11970	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CPF11_11970	PWY-5913	TCA cycle VI (obligate autotrophs)
CPF11_11970	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CPF11_11970	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CPF11_11970	PWY-6549	L-glutamine biosynthesis III
CPF11_11970	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CPF11_11970	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CPF11_11970	PWY-7124	ethylene biosynthesis V (engineered)
CPF11_12000	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CPF11_12035	PWY-6938	NADH repair
CPF11_12140	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CPF11_12140	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CPF11_12145	PWY-3961	phosphopantothenate biosynthesis II
CPF11_12185	PWY-6749	CMP-legionaminate biosynthesis I
CPF11_12190	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CPF11_12195	PWY-181	photorespiration
CPF11_12365	PWY-2201	folate transformations I
CPF11_12365	PWY-3841	folate transformations II
CPF11_12370	PWY-6700	queuosine biosynthesis
CPF11_12375	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CPF11_12375	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CPF11_12375	PWY-6936	seleno-amino acid biosynthesis
CPF11_12375	PWY-702	L-methionine biosynthesis II
CPF11_12475	PWY-5913	TCA cycle VI (obligate autotrophs)
CPF11_12475	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CPF11_12475	PWY-6638	sulfolactate degradation III
CPF11_12475	PWY-6642	(<i>R</i>)-cysteate degradation
CPF11_12475	PWY-6643	coenzyme M biosynthesis II
CPF11_12475	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CPF11_12475	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CPF11_12475	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CPF11_12580	PWY-7782	CPF11_12580
CPF11_12580	PWY-7783	CPF11_12580
CPF11_12590	PWY-6348	phosphate acquisition
CPF11_12595	PWY-723	alkylnitronates degradation
CPF11_12625	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CPF11_12625	PWY-6596	adenosine nucleotides degradation I
CPF11_12625	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CPF11_12675	PWY-4983	L-citrulline-nitric oxide cycle
CPF11_12675	PWY-4984	urea cycle
CPF11_12675	PWY-5	canavanine biosynthesis
CPF11_12675	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_12675	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CPF11_12695	PWY-6891	thiazole biosynthesis II (Bacillus)
CPF11_12695	PWY-6892	thiazole biosynthesis I (E. coli)
CPF11_12695	PWY-7560	methylerythritol phosphate pathway II
CPF11_12755	PWY-6823	molybdenum cofactor biosynthesis
CPF11_12765	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CPF11_12765	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
CPF11_12805	PWY-1281	sulfoacetaldehyde degradation I
CPF11_12805	PWY-5482	pyruvate fermentation to acetate II
CPF11_12805	PWY-5485	pyruvate fermentation to acetate IV
CPF11_12805	PWY-5497	purine nucleobases degradation II (anaerobic)
CPF11_12805	PWY-6637	sulfolactate degradation II
CPF11_12810	PWY-5482	pyruvate fermentation to acetate II
CPF11_12810	PWY-5485	pyruvate fermentation to acetate IV
CPF11_12810	PWY-5497	purine nucleobases degradation II (anaerobic)
CPF11_12875	PWY-5392	reductive TCA cycle II
CPF11_12875	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CPF11_12875	PWY-5690	TCA cycle II (plants and fungi)
CPF11_12875	PWY-5913	TCA cycle VI (obligate autotrophs)
CPF11_12875	PWY-6728	methylaspartate cycle
CPF11_12875	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CPF11_12875	PWY-7254	TCA cycle VII (acetate-producers)
CPF11_12875	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CPF11_12885	PWY-6683	sulfate reduction III (assimilatory)
CPF11_12910	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CPF11_12920	PWY-5194	siroheme biosynthesis
CPF11_12920	PWY-5196	factor 430 biosynthesis
CPF11_12920	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CPF11_12925	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CPF11_13250	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CPF11_13255	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CPF11_13335	PWY-7731	CPF11_13335
CPF11_13375	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CPF11_13375	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CPF11_13375	PWY-6936	seleno-amino acid biosynthesis
CPF11_13375	PWY-702	L-methionine biosynthesis II
CPF11_13490	PWY-3781	aerobic respiration I (cytochrome c)
CPF11_13490	PWY-4521	arsenite oxidation I (respiratory)
CPF11_13490	PWY-6692	Fe(II) oxidation
CPF11_13490	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CPF11_13680	PWY-6683	sulfate reduction III (assimilatory)
CPF11_13720	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CPF11_13720	PWY-7494	choline degradation IV
CPF11_13725	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CPF11_14060	PWY-4202	arsenate detoxification I (glutaredoxin)
CPF11_14060	PWY-4621	arsenate detoxification II (glutaredoxin)
