CPF11_00005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_00005 PF03466 LysR substrate binding domain CPF11_00010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPF11_00015 PF13532 2OG-Fe(II) oxygenase superfamily CPF11_00020 PF13460 NADH(P)-binding CPF11_00035 PF01850 PIN domain CPF11_00040 PF02069 Prokaryotic metallothionein CPF11_00045 PF01022 Bacterial regulatory protein, arsR family CPF11_00050 PF00005 ABC transporter CPF11_00050 PF06472 CPF11_00050 CPF11_00055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPF11_00055 PF03129 Anticodon binding domain CPF11_00055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPF11_00060 PF01475 Ferric uptake regulator family CPF11_00065 PF08856 CPF11_00065 CPF11_00070 PF01227 GTP cyclohydrolase I CPF11_00075 PF01502 Phosphoribosyl-AMP cyclohydrolase CPF11_00080 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPF11_00080 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPF11_00095 PF10074 CPF11_00095 CPF11_00100 PF12728 Helix-turn-helix domain CPF11_00105 PF10134 CPF11_00105 CPF11_00110 PF11000 CPF11_00110 CPF11_00115 PF10502 Signal peptidase, peptidase S26 CPF11_00120 PF05284 CPF11_00120 CPF11_00125 PF01464 Transglycosylase SLT domain CPF11_00130 PF11843 CPF11_00130 CPF11_00135 PF08021 Siderophore-interacting FAD-binding domain CPF11_00140 PF13578 Methyltransferase domain CPF11_00145 PF02311 AraC-like ligand binding domain CPF11_00145 PF12833 Helix-turn-helix domain CPF11_00150 PF01850 PIN domain CPF11_00155 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CPF11_00160 PF14355 CPF11_00160 CPF11_00170 PF02534 Type IV secretory system Conjugative DNA transfer CPF11_00175 PF01402 Ribbon-helix-helix protein, copG family CPF11_00180 PF00437 Type II/IV secretion system protein CPF11_00185 PF04956 CPF11_00185 CPF11_00190 PF05101 CPF11_00190 CPF11_00195 PF03135 CPF11_00195 CPF11_00205 PF04610 CPF11_00205 CPF11_00210 PF04335 VirB8 protein CPF11_00215 PF03524 Conjugal transfer protein CPF11_00220 PF03743 Bacterial conjugation TrbI-like protein CPF11_00225 PF10038 CPF11_00225 CPF11_00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_00230 PF03466 LysR substrate binding domain CPF11_00235 PF04542 Sigma-70 region 2 CPF11_00235 PF08281 Sigma-70, region 4 CPF11_00240 PF04773 FecR protein CPF11_00240 PF16220 CPF11_00240 CPF11_00245 PF00593 TonB dependent receptor CPF11_00245 PF07660 Secretin and TonB N terminus short domain CPF11_00245 PF07715 TonB-dependent Receptor Plug Domain CPF11_00250 PF03929 CPF11_00250 CPF11_00260 PF01618 CPF11_00260 CPF11_00265 PF02472 Biopolymer transport protein ExbD/TolR CPF11_00270 PF03544 Gram-negative bacterial TonB protein C-terminal CPF11_00280 PF00873 AcrB/AcrD/AcrF family CPF11_00290 PF00145 C-5 cytosine-specific DNA methylase CPF11_00300 PF16280 CPF11_00300 CPF11_00305 PF03852 DNA mismatch endonuclease Vsr CPF11_00310 PF00589 Phage integrase family CPF11_00310 PF13356 Domain of unknown function (DUF4102) CPF11_00310 PF14659 Phage integrase, N-terminal SAM-like domain CPF11_00315 PF00155 Aminotransferase class I and II CPF11_00315 PF00392 Bacterial regulatory proteins, gntR family CPF11_00335 PF04073 Aminoacyl-tRNA editing domain CPF11_00340 PF00892 EamA-like transporter family CPF11_00350 PF00717 Peptidase S24-like CPF11_00355 PF13693 Winged helix-turn-helix DNA-binding CPF11_00360 PF02195 ParB-like nuclease domain CPF11_00365 PF13560 Helix-turn-helix domain CPF11_00375 PF02316 Mu DNA-binding domain CPF11_00375 PF02914 Bacteriophage Mu transposase CPF11_00375 PF09039 Mu DNA binding, I gamma subdomain CPF11_00375 PF09299 Mu transposase, C-terminal CPF11_00380 PF09077 Mu B transposition protein, C terminal CPF11_00380 PF13401 AAA domain CPF11_00400 PF11363 CPF11_00400 CPF11_00405 PF06252 CPF11_00405 CPF11_00410 PF10979 CPF11_00410 CPF11_00425 PF05838 Glycosyl hydrolase 108 CPF11_00425 PF09374 Predicted Peptidoglycan domain CPF11_00445 PF11985 CPF11_00445 CPF11_00465 PF06074 CPF11_00465 CPF11_00470 PF04233 CPF11_00470 CPF11_00475 PF05069 CPF11_00475 CPF11_00480 PF10123 CPF11_00480 CPF11_00490 PF10124 CPF11_00490 CPF11_00500 PF07030 CPF11_00500 CPF11_00515 PF04984 Phage tail sheath protein CPF11_00515 PF17482 CPF11_00515 CPF11_00520 PF10618 CPF11_00520 CPF11_00530 PF10145 CPF11_00530 CPF11_00535 PF07157 CPF11_00535 CPF11_00545 PF06890 Bacteriophage Mu Gp45 protein CPF11_00550 PF07409 CPF11_00550 CPF11_00555 PF04865 CPF11_00555 CPF11_00560 PF10076 CPF11_00560 CPF11_00595 PF03929 CPF11_00595 CPF11_00605 PF01618 CPF11_00605 CPF11_00610 PF02472 Biopolymer transport protein ExbD/TolR CPF11_00615 PF03544 Gram-negative bacterial TonB protein C-terminal CPF11_00625 PF01566 CPF11_00625 CPF11_00630 PF01325 Iron dependent repressor, N-terminal DNA binding domain CPF11_00630 PF02742 Iron dependent repressor, metal binding and dimerisation domain CPF11_00640 PF01497 Periplasmic binding protein CPF11_00645 PF01032 FecCD transport family CPF11_00650 PF00005 ABC transporter CPF11_00655 PF03992 Antibiotic biosynthesis monooxygenase CPF11_00660 PF01126 Heme oxygenase CPF11_00665 PF00593 TonB dependent receptor CPF11_00665 PF07715 TonB-dependent Receptor Plug Domain CPF11_00670 PF00881 Nitroreductase family CPF11_00675 PF02770 Acyl-CoA dehydrogenase, middle domain CPF11_00675 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CPF11_00685 PF00296 Luciferase-like monooxygenase CPF11_00690 PF11784 CPF11_00690 CPF11_00690 PF13086 AAA domain CPF11_00690 PF13087 AAA domain CPF11_00690 PF13195 CPF11_00690 CPF11_00690 PF13245 Part of AAA domain CPF11_00695 PF07859 alpha/beta hydrolase fold CPF11_00700 PF01425 Amidase CPF11_00705 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CPF11_00705 PF00364 Biotin-requiring enzyme CPF11_00705 PF02626 Allophanate hydrolase subunit 2 CPF11_00705 PF02682 Allophanate hydrolase subunit 1 CPF11_00705 PF02785 Biotin carboxylase C-terminal domain CPF11_00705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPF11_00710 PF09347 Domain of unknown function (DUF1989) CPF11_00715 PF09347 Domain of unknown function (DUF1989) CPF11_00720 PF08753 NikR C terminal nickel binding domain CPF11_00725 PF00005 ABC transporter CPF11_00730 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_00735 PF09084 NMT1/THI5 like CPF11_00745 PF07690 Major Facilitator Superfamily CPF11_00755 PF12680 SnoaL-like domain CPF11_00760 PF05170 CPF11_00760 CPF11_00765 PF10009 CPF11_00765 CPF11_00770 PF00440 Bacterial regulatory proteins, tetR family CPF11_00775 PF00893 Small Multidrug Resistance protein CPF11_00780 PF13701 CPF11_00780 CPF11_00785 PF16576 CPF11_00785 CPF11_00790 PF00873 AcrB/AcrD/AcrF family CPF11_00795 PF02321 Outer membrane efflux protein CPF11_00800 PF00012 Hsp70 protein CPF11_00805 PF02586 Uncharacterised ACR, COG2135 CPF11_00810 PF01904 Protein of unknown function DUF72 CPF11_00815 PF00005 ABC transporter CPF11_00815 PF06472 CPF11_00815 CPF11_00820 PF00593 TonB dependent receptor CPF11_00820 PF07715 TonB-dependent Receptor Plug Domain CPF11_00825 PF11162 CPF11_00825 CPF11_00835 PF08543 Phosphomethylpyrimidine kinase CPF11_00840 PF00583 Acetyltransferase (GNAT) family CPF11_00845 PF01979 Amidohydrolase family CPF11_00850 PF06165 Glycosyltransferase family 36 CPF11_00850 PF10091 Putative glucoamylase CPF11_00850 PF17167 CPF11_00850 CPF11_00860 PF00472 RF-1 domain CPF11_00865 PF00199 Catalase CPF11_00865 PF06628 Catalase-related immune-responsive CPF11_00870 PF06965 Na+/H+ antiporter 1 CPF11_00875 PF03583 Secretory lipase CPF11_00880 PF00440 Bacterial regulatory proteins, tetR family CPF11_00880 PF13305 WHG domain CPF11_00885 PF00440 Bacterial regulatory proteins, tetR family CPF11_00890 PF13243 Prenyltransferase-like CPF11_00890 PF13249 Prenyltransferase-like CPF11_00900 PF02321 Outer membrane efflux protein CPF11_00905 PF12698 ABC-2 family transporter protein CPF11_00910 PF00005 ABC transporter CPF11_00910 PF12698 ABC-2 family transporter protein CPF11_00915 PF13437 HlyD family secretion protein CPF11_00915 PF13533 Biotin-lipoyl like CPF11_00920 PF10262 Rdx family CPF11_00925 PF03544 Gram-negative bacterial TonB protein C-terminal CPF11_00930 PF01618 CPF11_00930 CPF11_00935 PF02472 Biopolymer transport protein ExbD/TolR CPF11_00940 PF02472 Biopolymer transport protein ExbD/TolR CPF11_00945 PF01019 Gamma-glutamyltranspeptidase CPF11_00950 PF01979 Amidohydrolase family CPF11_00955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_00955 PF03466 LysR substrate binding domain CPF11_00960 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CPF11_00965 PF01522 Polysaccharide deacetylase CPF11_00970 PF09349 OHCU decarboxylase CPF11_00975 PF00576 HIUase/Transthyretin family CPF11_00980 PF00860 Permease family CPF11_00985 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_00985 PF00941 FAD binding domain in molybdopterin dehydrogenase CPF11_00985 PF01799 [2Fe-2S] binding domain CPF11_00985 PF03450 CO dehydrogenase flavoprotein C-terminal domain CPF11_00990 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CPF11_00990 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_00995 PF02625 XdhC and CoxI family CPF11_00995 PF13478 XdhC Rossmann domain CPF11_01000 PF01425 Amidase CPF11_01005 PF13318 CPF11_01005 CPF11_01010 PF11533 Protein of unknown function (DUF3225) CPF11_01015 PF00266 Aminotransferase class-V CPF11_01020 PF01546 Peptidase family M20/M25/M40 CPF11_01020 PF07687 Peptidase dimerisation domain CPF11_01025 PF07715 TonB-dependent Receptor Plug Domain CPF11_01030 PF01979 Amidohydrolase family CPF11_01040 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_01045 PF00005 ABC transporter CPF11_01050 PF09933 CPF11_01050 CPF11_01055 PF09084 NMT1/THI5 like CPF11_01060 PF01979 Amidohydrolase family CPF11_01065 PF02567 Phenazine biosynthesis-like protein CPF11_01070 PF02558 Ketopantoate reductase PanE/ApbA CPF11_01070 PF08546 Ketopantoate reductase PanE/ApbA C terminal CPF11_01075 PF03222 Tryptophan/tyrosine permease family CPF11_01080 PF03831 PhnA protein CPF11_01080 PF08274 PhnA Zinc-Ribbon CPF11_01085 PF00107 Zinc-binding dehydrogenase CPF11_01085 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_01090 PF01204 Trehalase CPF11_01095 PF00005 ABC transporter CPF11_01095 PF16326 CPF11_01095 CPF11_01100 PF00072 Response regulator receiver domain CPF11_01105 PF04542 Sigma-70 region 2 CPF11_01105 PF08281 Sigma-70, region 4 CPF11_01110 PF04542 Sigma-70 region 2 CPF11_01110 PF08281 Sigma-70, region 4 CPF11_01120 PF07568 CPF11_01120 CPF11_01120 PF13581 Histidine kinase-like ATPase domain CPF11_01125 PF00005 ABC transporter CPF11_01125 PF00664 ABC transporter transmembrane region CPF11_01130 PF00005 ABC transporter CPF11_01130 PF00664 ABC transporter transmembrane region CPF11_01135 PF00691 OmpA family CPF11_01140 PF00270 DEAD/DEAH box helicase CPF11_01140 PF00271 Helicase conserved C-terminal domain CPF11_01140 PF00570 HRDC domain CPF11_01140 PF09382 RQC domain CPF11_01140 PF16124 CPF11_01140 CPF11_01145 PF00455 CPF11_01145 CPF11_01145 PF08220 DeoR-like helix-turn-helix domain CPF11_01150 PF01266 FAD dependent oxidoreductase CPF11_01150 PF16901 CPF11_01150 CPF11_01155 PF00230 Major intrinsic protein CPF11_01160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CPF11_01160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CPF11_01165 PF04314 Protein of unknown function (DUF461) CPF11_01170 PF03477 ATP cone domain CPF11_01175 PF01029 NusB family CPF11_01180 PF00586 AIR synthase related protein, N-terminal domain CPF11_01180 PF02769 AIR synthase related protein, C-terminal domain CPF11_01190 PF00106 short chain dehydrogenase CPF11_01215 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CPF11_01220 PF02321 Outer membrane efflux protein CPF11_01225 PF10691 CPF11_01225 CPF11_01230 PF00133 tRNA synthetases class I (I, L, M and V) CPF11_01230 PF08264 Anticodon-binding domain of tRNA CPF11_01230 PF10458 Valyl tRNA synthetase tRNA binding arm CPF11_01235 PF01625 Peptide methionine sulfoxide reductase CPF11_01240 PF00005 ABC transporter CPF11_01240 PF09821 CPF11_01240 CPF11_01245 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_01250 PF00692 dUTPase CPF11_01255 PF02441 Flavoprotein CPF11_01255 PF04127 DNA / pantothenate metabolism flavoprotein CPF11_01260 PF01209 ubiE/COQ5 methyltransferase family CPF11_01265 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CPF11_01265 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CPF11_01270 PF01649 Ribosomal protein S20 CPF11_01275 PF00308 Bacterial dnaA protein CPF11_01275 PF08299 Bacterial dnaA protein helix-turn-helix CPF11_01275 PF11638 DnaA N-terminal domain CPF11_01280 PF00712 DNA polymerase III beta subunit, N-terminal domain CPF11_01280 PF02767 DNA polymerase III beta subunit, central domain CPF11_01280 PF02768 DNA polymerase III beta subunit, C-terminal domain CPF11_01285 PF13304 AAA domain CPF11_01290 PF00204 DNA gyrase B CPF11_01290 PF00986 DNA gyrase B subunit, carboxyl terminus CPF11_01290 PF01751 Toprim domain CPF11_01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_01295 PF00793 DAHP synthetase I family CPF11_01300 PF00117 Glutamine amidotransferase class-I CPF11_01300 PF06418 CTP synthase N-terminus CPF11_01305 PF03840 Preprotein translocase SecG subunit CPF11_01310 PF00121 Triosephosphate isomerase CPF11_01315 PF13145 PPIC-type PPIASE domain CPF11_01315 PF13624 SurA N-terminal domain CPF11_01320 PF00425 chorismate binding enzyme CPF11_01320 PF04715 Anthranilate synthase component I, N terminal region CPF11_01325 PF00117 Glutamine amidotransferase class-I CPF11_01330 PF00591 Glycosyl transferase family, a/b domain CPF11_01330 PF02885 Glycosyl transferase family, helical bundle domain CPF11_01335 PF00218 Indole-3-glycerol phosphate synthase CPF11_01340 PF01967 MoaC family CPF11_01345 PF00676 Dehydrogenase E1 component CPF11_01350 PF00364 Biotin-requiring enzyme CPF11_01350 PF02779 Transketolase, pyrimidine binding domain CPF11_01350 PF02780 Transketolase, C-terminal domain CPF11_01355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPF11_01355 PF00364 Biotin-requiring enzyme CPF11_01355 PF02817 e3 binding domain CPF11_01360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPF11_01360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_01365 PF04055 Radical SAM superfamily CPF11_01370 PF03364 Polyketide cyclase / dehydrase and lipid transport CPF11_01380 PF02464 Competence-damaged protein CPF11_01385 PF04608 Phosphatidylglycerophosphatase A CPF11_01390 PF01464 Transglycosylase SLT domain CPF11_01395 PF03741 CPF11_01395 CPF11_01400 PF00206 Lyase CPF11_01400 PF10397 Adenylosuccinate lyase C-terminus CPF11_01405 PF01259 SAICAR synthetase CPF11_01410 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CPF11_01420 PF13507 CobB/CobQ-like glutamine amidotransferase domain CPF11_01425 PF00586 AIR synthase related protein, N-terminal domain CPF11_01425 PF02769 AIR synthase related protein, C-terminal domain CPF11_01430 PF01722 BolA-like protein CPF11_01435 PF00462 Glutaredoxin CPF11_01445 PF02021 Uncharacterised protein family UPF0102 CPF11_01450 PF13091 PLD-like domain CPF11_01450 PF13396 CPF11_01450 CPF11_01455 PF03372 Endonuclease/Exonuclease/phosphatase family CPF11_01460 PF01594 CPF11_01460 CPF11_01465 PF00581 Rhodanese-like domain CPF11_01470 PF01053 Cys/Met metabolism PLP-dependent enzyme CPF11_01475 PF01078 Magnesium chelatase, subunit ChlI CPF11_01475 PF13335 CPF11_01475 CPF11_01475 PF13541 Subunit ChlI of Mg-chelatase CPF11_01480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPF11_01480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPF11_01485 PF00459 Inositol monophosphatase family CPF11_01490 PF00034 Cytochrome c CPF11_01495 PF02348 Cytidylyltransferase CPF11_01500 PF00800 Prephenate dehydratase CPF11_01500 PF01842 ACT domain CPF11_01505 PF00701 Dihydrodipicolinate synthetase family CPF11_01510 PF01668 SmpB protein CPF11_01515 PF00313 'Cold-shock' DNA-binding domain CPF11_01520 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) CPF11_01530 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CPF11_01535 PF13847 Methyltransferase domain CPF11_01540 PF02698 DUF218 domain CPF11_01545 PF00698 Acyl transferase domain CPF11_01550 PF13561 Enoyl-(Acyl carrier protein) reductase CPF11_01555 PF00550 Phosphopantetheine attachment site CPF11_01560 PF00109 Beta-ketoacyl synthase, N-terminal domain CPF11_01560 PF02801 Beta-ketoacyl synthase, C-terminal domain CPF11_01565 PF02618 YceG-like family CPF11_01570 PF04366 CPF11_01570 CPF11_01575 PF00459 Inositol monophosphatase family CPF11_01580 PF03279 CPF11_01580 CPF11_01585 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CPF11_01590 PF04028 CPF11_01590 CPF11_01590 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CPF11_01595 PF06073 CPF11_01595 CPF11_01600 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CPF11_01600 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CPF11_01605 PF11011 CPF11_01605 CPF11_01610 PF00009 Elongation factor Tu GTP binding domain CPF11_01610 PF01583 Adenylylsulphate kinase CPF11_01615 PF01507 Phosphoadenosine phosphosulfate reductase family CPF11_01620 PF01507 Phosphoadenosine phosphosulfate reductase family CPF11_01625 PF03891 CPF11_01625 CPF11_01630 PF04055 Radical SAM superfamily CPF11_01630 PF06968 Biotin and Thiamin Synthesis associated domain CPF11_01640 PF06508 Queuosine biosynthesis protein QueC CPF11_01645 PF01242 6-pyruvoyl tetrahydropterin synthase CPF11_01650 PF06039 CPF11_01650 CPF11_01655 PF02566 OsmC-like protein CPF11_01660 PF01264 Chorismate synthase CPF11_01665 PF13561 Enoyl-(Acyl carrier protein) reductase CPF11_01670 PF01243 Pyridoxamine 5'-phosphate oxidase CPF11_01670 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CPF11_01675 PF00582 Universal stress protein family CPF11_01680 PF12706 Beta-lactamase superfamily domain CPF11_01685 PF01026 TatD related DNase CPF11_01690 PF09334 tRNA synthetases class I (M) CPF11_01695 PF13177 DNA polymerase III, delta subunit CPF11_01700 PF02223 Thymidylate kinase CPF11_01705 PF00768 D-alanyl-D-alanine carboxypeptidase CPF11_01705 PF07943 Penicillin-binding protein 5, C-terminal domain CPF11_01710 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel CPF11_01710 PF05036 Sporulation related domain CPF11_01715 PF13406 Transglycosylase SLT domain CPF11_01720 PF09335 CPF11_01720 CPF11_01725 PF02222 ATP-grasp domain CPF11_01730 PF13520 Amino acid permease CPF11_01735 PF02673 CPF11_01735 CPF11_01740 PF02470 CPF11_01740 CPF11_01750 PF13763 CPF11_01750 CPF11_01760 PF05175 Methyltransferase small domain CPF11_01770 PF00472 RF-1 domain CPF11_01770 PF03462 PCRF domain CPF11_01775 PF03129 Anticodon binding domain CPF11_01775 PF13393 Histidyl-tRNA synthetase CPF11_01780 PF04551 GcpE protein CPF11_01785 PF13413 Helix-turn-helix domain CPF11_01785 PF13464 CPF11_01785 CPF11_01790 PF03060 Nitronate monooxygenase CPF11_01795 PF00696 Amino acid kinase family CPF11_01795 PF01842 ACT domain CPF11_01795 PF13840 ACT domain CPF11_01800 PF13489 Methyltransferase domain CPF11_01805 PF10282 Lactonase, 7-bladed beta-propeller CPF11_01810 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) CPF11_01815 PF06676 CPF11_01815 CPF11_01820 PF00462 Glutaredoxin CPF11_01825 PF00156 Phosphoribosyl transferase domain CPF11_01830 PF08241 Methyltransferase domain CPF11_01835 PF04055 Radical SAM superfamily CPF11_01835 PF06463 Molybdenum Cofactor Synthesis C CPF11_01835 PF13353 4Fe-4S single cluster domain CPF11_01840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPF11_01840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPF11_01840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPF11_01840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPF11_01845 PF00483 Nucleotidyl transferase CPF11_01855 PF03099 Biotin/lipoate A/B protein ligase family CPF11_01860 PF03548 Outer membrane lipoprotein carrier protein LolA CPF11_01865 PF01722 BolA-like protein CPF11_01870 PF00226 DnaJ domain CPF11_01875 PF07728 AAA domain (dynein-related subfamily) CPF11_01875 PF12556 CPF11_01875 CPF11_01880 PF06213 CPF11_01880 CPF11_01880 PF11775 CPF11_01880 CPF11_01885 PF00282 Pyridoxal-dependent decarboxylase conserved domain CPF11_01890 PF13593 SBF-like CPA transporter family (DUF4137) CPF11_01900 PF00270 DEAD/DEAH box helicase CPF11_01900 PF00271 Helicase conserved C-terminal domain CPF11_01900 PF02559 CarD-like/TRCF domain CPF11_01900 PF03461 TRCF domain CPF11_01905 PF03937 Flavinator of succinate dehydrogenase CPF11_01910 PF00270 DEAD/DEAH box helicase CPF11_01910 PF00271 Helicase conserved C-terminal domain CPF11_01915 PF02581 Thiamine monophosphate synthase/TENI CPF11_01920 PF05690 Thiazole biosynthesis protein ThiG CPF11_01925 PF02597 ThiS family CPF11_01930 PF01266 FAD dependent oxidoreductase CPF11_01935 PF11911 CPF11_01935 CPF11_01940 PF00113 Enolase, C-terminal TIM barrel domain CPF11_01940 PF03952 Enolase, N-terminal domain CPF11_01945 PF04977 Septum formation initiator CPF11_01950 PF00471 Ribosomal protein L33 CPF11_01955 PF00994 Probable molybdopterin binding domain CPF11_01955 PF03453 MoeA N-terminal region (domain I and II) CPF11_01955 PF03454 MoeA C-terminal region (domain IV) CPF11_01960 PF00717 Peptidase S24-like CPF11_01960 PF01726 LexA DNA binding domain CPF11_01965 PF13489 Methyltransferase domain CPF11_01965 PF13500 AAA domain CPF11_01970 PF12697 Alpha/beta hydrolase family CPF11_01975 PF00155 Aminotransferase class I and II CPF11_01980 PF00202 Aminotransferase class-III CPF11_01985 PF02391 MoaE protein CPF11_01990 PF02597 ThiS family CPF11_02000 PF01066 CDP-alcohol phosphatidyltransferase CPF11_02005 PF01541 GIY-YIG catalytic domain CPF11_02005 PF02151 UvrB/uvrC motif CPF11_02005 PF08459 UvrC Helix-hairpin-helix N-terminal CPF11_02005 PF14520 Helix-hairpin-helix domain CPF11_02010 PF01244 Membrane dipeptidase (Peptidase family M19) CPF11_02015 PF03372 Endonuclease/Exonuclease/phosphatase family CPF11_02020 PF04357 CPF11_02020 CPF11_02025 PF01103 Surface antigen CPF11_02025 PF07244 Surface antigen variable number repeat CPF11_02030 PF01553 Acyltransferase CPF11_02035 PF00919 Uncharacterized protein family UPF0004 CPF11_02035 PF01938 TRAM domain CPF11_02035 PF04055 Radical SAM superfamily CPF11_02040 PF02562 PhoH-like protein CPF11_02045 PF02130 Uncharacterized protein family UPF0054 CPF11_02050 PF00571 CBS domain CPF11_02050 PF03471 Transporter associated domain CPF11_02055 PF13462 Thioredoxin CPF11_02060 PF02463 RecF/RecN/SMC N terminal domain CPF11_02070 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CPF11_02070 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CPF11_02075 PF00149 Calcineurin-like phosphoesterase CPF11_02080 PF01817 Chorismate mutase type II CPF11_02085 PF00300 Histidine phosphatase superfamily (branch 1) CPF11_02090 PF00285 Citrate synthase CPF11_02100 PF00156 Phosphoribosyl transferase domain CPF11_02105 PF01177 Asp/Glu/Hydantoin racemase CPF11_02110 PF00348 Polyprenyl synthetase CPF11_02115 PF05175 Methyltransferase small domain CPF11_02120 PF00268 Ribonucleotide reductase, small chain CPF11_02125 PF00317 Ribonucleotide reductase, all-alpha domain CPF11_02125 PF02867 Ribonucleotide reductase, barrel domain CPF11_02130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CPF11_02135 PF02355 Protein export membrane protein CPF11_02135 PF07549 SecD/SecF GG Motif CPF11_02140 PF02355 Protein export membrane protein CPF11_02140 PF07549 SecD/SecF GG Motif CPF11_02150 PF01741 Large-conductance mechanosensitive channel, MscL CPF11_02155 PF01197 Ribosomal protein L31 CPF11_02160 PF00011 Hsp20/alpha crystallin family CPF11_02165 PF06242 CPF11_02165 CPF11_02170 PF04325 Protein of unknown function (DUF465) CPF11_02175 PF04325 Protein of unknown function (DUF465) CPF11_02180 PF00731 AIR carboxylase CPF11_02185 PF02222 ATP-grasp domain CPF11_02190 PF04002 RadC-like JAB domain CPF11_02195 PF04002 RadC-like JAB domain CPF11_02200 PF00580 UvrD/REP helicase N-terminal domain CPF11_02200 PF13361 UvrD-like helicase C-terminal domain CPF11_02205 PF06325 Ribosomal protein L11 methyltransferase (PrmA) CPF11_02210 PF00557 Metallopeptidase family M24 CPF11_02210 PF01321 Creatinase/Prolidase N-terminal domain CPF11_02210 PF16188 CPF11_02210 CPF11_02210 PF16189 CPF11_02210 CPF11_02215 PF00180 Isocitrate/isopropylmalate dehydrogenase CPF11_02225 PF00009 Elongation factor Tu GTP binding domain CPF11_02225 PF03144 Elongation factor Tu domain 2 CPF11_02225 PF16658 CPF11_02225 CPF11_02230 PF00163 Ribosomal protein S4/S9 N-terminal domain CPF11_02230 PF01479 S4 domain CPF11_02235 PF03729 CPF11_02235 CPF11_02240 PF00999 Sodium/hydrogen exchanger family CPF11_02255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPF11_02260 PF12849 PBP superfamily domain CPF11_02265 PF01588 Putative tRNA binding domain CPF11_02265 PF03147 Ferredoxin-fold anticodon binding domain CPF11_02265 PF03483 B3/4 domain CPF11_02265 PF03484 tRNA synthetase B5 domain CPF11_02270 PF01409 tRNA synthetases class II core domain (F) CPF11_02270 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CPF11_02275 PF00453 Ribosomal protein L20 CPF11_02280 PF01632 Ribosomal protein L35 CPF11_02285 PF01232 Mannitol dehydrogenase Rossmann domain CPF11_02285 PF08125 Mannitol dehydrogenase C-terminal domain CPF11_02290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_02295 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_02295 PF01799 [2Fe-2S] binding domain CPF11_02300 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_02305 PF02657 Fe-S metabolism associated domain CPF11_02310 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_02310 PF07724 AAA domain (Cdc48 subfamily) CPF11_02310 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_02315 PF00227 Proteasome subunit CPF11_02320 PF00072 Response regulator receiver domain CPF11_02320 PF00512 His Kinase A (phospho-acceptor) domain CPF11_02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_02320 PF08448 PAS fold CPF11_02325 PF00072 Response regulator receiver domain CPF11_02325 PF00512 His Kinase A (phospho-acceptor) domain CPF11_02325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_02335 PF13717 CPF11_02335 CPF11_02340 PF00005 ABC transporter CPF11_02350 PF02698 DUF218 domain CPF11_02355 PF00756 Putative esterase CPF11_02360 PF01062 CPF11_02360 CPF11_02365 PF02559 CarD-like/TRCF domain CPF11_02370 PF13424 Tetratricopeptide repeat CPF11_02370 PF13432 Tetratricopeptide repeat CPF11_02375 PF13458 Periplasmic binding protein CPF11_02380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_02385 PF03486 HI0933-like protein CPF11_02390 PF00043 Glutathione S-transferase, C-terminal domain CPF11_02390 PF13417 Glutathione S-transferase, N-terminal domain CPF11_02395 PF03775 Septum formation inhibitor MinC, C-terminal domain CPF11_02395 PF05209 Septum formation inhibitor MinC, N-terminal domain CPF11_02400 PF13614 AAA domain CPF11_02405 PF03776 Septum formation topological specificity factor MinE CPF11_02410 PF00392 Bacterial regulatory proteins, gntR family CPF11_02410 PF07729 FCD domain CPF11_02415 PF00005 ABC transporter CPF11_02415 PF00664 ABC transporter transmembrane region CPF11_02425 PF03739 CPF11_02425 CPF11_02430 PF03739 CPF11_02430 CPF11_02435 PF03968 OstA-like protein CPF11_02435 PF04453 Organic solvent tolerance protein CPF11_02440 PF00639 PPIC-type PPIASE domain CPF11_02440 PF09312 SurA N-terminal domain CPF11_02445 PF00398 Ribosomal RNA adenine dimethylase CPF11_02450 PF02353 Mycolic acid cyclopropane synthetase CPF11_02455 PF01281 Ribosomal protein L9, N-terminal domain CPF11_02455 PF03948 Ribosomal protein L9, C-terminal domain CPF11_02460 PF01084 Ribosomal protein S18 CPF11_02465 PF01250 Ribosomal protein S6 CPF11_02470 PF13673 Acetyltransferase (GNAT) domain CPF11_02475 PF00140 Sigma-70 factor, region 1 CPF11_02475 PF03979 Sigma-70 factor, region 1 CPF11_02475 PF04539 Sigma-70 region 3 CPF11_02475 PF04542 Sigma-70 region 2 CPF11_02475 PF04545 Sigma-70, region 4 CPF11_02475 PF04546 Sigma-70, non-essential region CPF11_02480 PF01807 CHC2 zinc finger CPF11_02480 PF08275 DNA primase catalytic core, N-terminal domain CPF11_02480 PF13662 Toprim domain CPF11_02485 PF09424 Yqey-like protein CPF11_02490 PF00117 Glutamine amidotransferase class-I CPF11_02490 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CPF11_02495 PF02142 MGS-like domain CPF11_02495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPF11_02495 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPF11_02500 PF01272 Transcription elongation factor, GreA/GreB, C-term CPF11_02500 PF03449 Transcription elongation factor, N-terminal CPF11_02505 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_02510 PF01676 Metalloenzyme superfamily CPF11_02510 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CPF11_02515 PF01551 Peptidase family M23 CPF11_02525 PF03572 Peptidase family S41 CPF11_02525 PF13180 PDZ domain CPF11_02530 PF04748 Divergent polysaccharide deacetylase CPF11_02535 PF00293 NUDIX domain CPF11_02540 PF07690 Major Facilitator Superfamily CPF11_02545 PF00529 HlyD family secretion protein CPF11_02545 PF16576 CPF11_02545 CPF11_02550 PF00005 ABC transporter CPF11_02550 PF00664 ABC transporter transmembrane region CPF11_02555 PF01743 Poly A polymerase head domain CPF11_02555 PF12627 Probable RNA and SrmB- binding site of polymerase A CPF11_02560 PF06938 Protein of unknown function (DUF1285) CPF11_02565 PF07726 ATPase family associated with various cellular activities (AAA) CPF11_02570 PF01882 CPF11_02570 CPF11_02575 PF07584 CPF11_02575 CPF11_02575 PF13709 Domain of unknown function (DUF4159) CPF11_02590 PF01555 DNA methylase CPF11_02595 PF01351 Ribonuclease HII CPF11_02600 PF05532 CsbD-like CPF11_02605 PF07690 Major Facilitator Superfamily CPF11_02610 PF16576 CPF11_02610 CPF11_02615 PF00873 AcrB/AcrD/AcrF family CPF11_02620 PF00873 AcrB/AcrD/AcrF family CPF11_02625 PF02321 Outer membrane efflux protein CPF11_02630 PF07043 CPF11_02630 CPF11_02640 PF00005 ABC transporter CPF11_02645 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_02650 PF13379 NMT1-like family CPF11_02655 PF01196 Ribosomal protein L17 CPF11_02660 PF01000 RNA polymerase Rpb3/RpoA insert domain CPF11_02660 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CPF11_02660 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CPF11_02665 PF00411 Ribosomal protein S11 CPF11_02670 PF00416 Ribosomal protein S13/S18 CPF11_02675 PF00406 Adenylate kinase CPF11_02675 PF05191 Adenylate kinase, active site lid CPF11_02680 PF00344 SecY translocase CPF11_02685 PF00828 Ribosomal protein L18e/L15 CPF11_02690 PF00327 Ribosomal protein L30p/L7e CPF11_02695 PF00333 Ribosomal protein S5, N-terminal domain CPF11_02695 PF03719 Ribosomal protein S5, C-terminal domain CPF11_02700 PF00861 Ribosomal L18p/L5e family CPF11_02705 PF00347 Ribosomal protein L6 CPF11_02710 PF00410 Ribosomal protein S8 CPF11_02715 PF00253 Ribosomal protein S14p/S29e CPF11_02720 PF00281 Ribosomal protein L5 CPF11_02720 PF00673 ribosomal L5P family C-terminus CPF11_02725 PF00467 KOW motif CPF11_02725 PF17136 CPF11_02725 CPF11_02730 PF00238 Ribosomal protein L14p/L23e CPF11_02735 PF00366 Ribosomal protein S17 CPF11_02740 PF00831 Ribosomal L29 protein CPF11_02745 PF00252 Ribosomal protein L16p/L10e CPF11_02750 PF00189 Ribosomal protein S3, C-terminal domain CPF11_02750 PF07650 KH domain CPF11_02755 PF00237 Ribosomal protein L22p/L17e CPF11_02760 PF00203 Ribosomal protein S19 CPF11_02765 PF00181 Ribosomal Proteins L2, RNA binding domain CPF11_02765 PF03947 Ribosomal Proteins L2, C-terminal domain CPF11_02770 PF00276 Ribosomal protein L23 CPF11_02775 PF00573 Ribosomal protein L4/L1 family CPF11_02780 PF00297 Ribosomal protein L3 CPF11_02785 PF00338 Ribosomal protein S10p/S20e CPF11_02790 PF00009 Elongation factor Tu GTP binding domain CPF11_02790 PF03143 Elongation factor Tu C-terminal domain CPF11_02790 PF03144 Elongation factor Tu domain 2 CPF11_02795 PF00177 Ribosomal protein S7p/S5e CPF11_02800 PF00164 Ribosomal protein S12/S23 CPF11_02805 PF00623 RNA polymerase Rpb1, domain 2 CPF11_02805 PF04983 RNA polymerase Rpb1, domain 3 CPF11_02805 PF04997 RNA polymerase Rpb1, domain 1 CPF11_02805 PF04998 RNA polymerase Rpb1, domain 5 CPF11_02805 PF05000 RNA polymerase Rpb1, domain 4 CPF11_02810 PF00562 RNA polymerase Rpb2, domain 6 CPF11_02810 PF04560 RNA polymerase Rpb2, domain 7 CPF11_02810 PF04561 RNA polymerase Rpb2, domain 2 CPF11_02810 PF04563 RNA polymerase beta subunit CPF11_02810 PF04565 RNA polymerase Rpb2, domain 3 CPF11_02810 PF10385 RNA polymerase beta subunit external 1 domain CPF11_02820 PF00542 Ribosomal protein L7/L12 C-terminal domain CPF11_02820 PF16320 CPF11_02820 CPF11_02825 PF00466 Ribosomal protein L10 CPF11_02830 PF00687 Ribosomal protein L1p/L10e family CPF11_02835 PF00298 Ribosomal protein L11, RNA binding domain CPF11_02835 PF03946 Ribosomal protein L11, N-terminal domain CPF11_02840 PF02321 Outer membrane efflux protein CPF11_02845 PF16576 CPF11_02845 CPF11_02850 PF00873 AcrB/AcrD/AcrF family CPF11_02855 PF00512 His Kinase A (phospho-acceptor) domain CPF11_02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_02860 PF00072 Response regulator receiver domain CPF11_02860 PF00486 Transcriptional regulatory protein, C terminal CPF11_02865 PF02646 CPF11_02865 CPF11_02870 PF07690 Major Facilitator Superfamily CPF11_02880 PF00578 AhpC/TSA family CPF11_02885 PF03710 Glutamate-ammonia ligase adenylyltransferase CPF11_02885 PF08335 GlnD PII-uridylyltransferase CPF11_02890 PF13502 CPF11_02890 CPF11_02910 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CPF11_02915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPF11_02915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPF11_02920 PF12787 CPF11_02920 CPF11_02930 PF04273 Putative phosphatase (DUF442) CPF11_02935 PF01878 EVE domain CPF11_02940 PF03795 YCII-related domain CPF11_02945 PF01578 CPF11_02945 CPF11_02950 PF03100 CcmE CPF11_02955 PF01578 CPF11_02955 CPF11_02955 PF16327 CPF11_02955 CPF11_02960 PF00578 AhpC/TSA family CPF11_02965 PF03918 Cytochrome C biogenesis protein CPF11_02980 PF06078 Bacterial protein of unknown function (DUF937) CPF11_02985 PF04632 CPF11_02985 CPF11_02990 PF04632 CPF11_02990 CPF11_02995 PF01007 Inward rectifier potassium channel CPF11_03000 PF00754 F5/8 type C domain CPF11_03010 PF02470 CPF11_03010 CPF11_03020 PF02405 CPF11_03020 CPF11_03025 PF00211 Adenylate and Guanylate cyclase catalytic domain CPF11_03025 PF02743 Cache domain CPF11_03030 PF02541 Ppx/GppA phosphatase family CPF11_03035 PF02503 Polyphosphate kinase middle domain CPF11_03035 PF13089 Polyphosphate kinase N-terminal domain CPF11_03035 PF13090 Polyphosphate kinase C-terminal domain CPF11_03045 PF00586 AIR synthase related protein, N-terminal domain CPF11_03045 PF02769 AIR synthase related protein, C-terminal domain CPF11_03050 PF00551 Formyl transferase CPF11_03055 PF01029 NusB family CPF11_03055 PF01189 NOL1/NOP2/sun family CPF11_03060 PF00834 Ribulose-phosphate 3 epimerase family CPF11_03065 PF07940 Heparinase II/III-like protein CPF11_03070 PF00534 Glycosyl transferases group 1 CPF11_03070 PF13579 Glycosyl transferase 4-like domain CPF11_03080 PF00929 Exonuclease CPF11_03085 PF01121 Dephospho-CoA kinase CPF11_03090 PF01488 Shikimate / quinate 5-dehydrogenase CPF11_03090 PF08501 Shikimate dehydrogenase substrate binding domain CPF11_03095 PF05013 N-formylglutamate amidohydrolase CPF11_03110 PF00206 Lyase CPF11_03110 PF14698 Argininosuccinate lyase C-terminal CPF11_03115 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPF11_03115 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPF11_03120 PF13779 CPF11_03120 CPF11_03125 PF01370 NAD dependent epimerase/dehydratase family CPF11_03130 PF00089 Trypsin CPF11_03135 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_03140 PF12840 Helix-turn-helix domain CPF11_03145 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPF11_03150 PF02548 Ketopantoate hydroxymethyltransferase CPF11_03165 PF06048 CPF11_03165 CPF11_03185 PF00249 Myb-like DNA-binding domain CPF11_03225 PF01381 Helix-turn-helix CPF11_03240 PF14373 CPF11_03240 CPF11_03260 PF13208 CPF11_03260 CPF11_03260 PF15615 CPF11_03260 CPF11_03265 PF10923 CPF11_03265 CPF11_03280 PF01464 Transglycosylase SLT domain CPF11_03285 PF03592 Terminase small subunit CPF11_03290 PF05534 CPF11_03290 CPF11_03295 PF07927 YcfA-like protein CPF11_03300 PF00589 Phage integrase family CPF11_03300 PF13356 Domain of unknown function (DUF4102) CPF11_03325 PF01966 HD domain CPF11_03325 PF04851 Type III restriction enzyme, res subunit CPF11_03330 PF09827 CRISPR associated protein Cas2 CPF11_03335 PF01867 CRISPR associated protein Cas1 CPF11_03340 PF01930 Domain of unknown function DUF83 CPF11_03345 PF05107 CPF11_03345 CPF11_03350 PF09709 CPF11_03350 CPF11_03355 PF09704 CRISPR-associated protein (Cas_Cas5) CPF11_03380 PF12833 Helix-turn-helix domain CPF11_03385 PF13469 Sulfotransferase family CPF11_03415 PF02423 Ornithine cyclodeaminase/mu-crystallin family CPF11_03420 PF00881 Nitroreductase family CPF11_03430 PF01810 CPF11_03430 CPF11_03435 PF14016 CPF11_03435 CPF11_03440 PF01048 Phosphorylase superfamily CPF11_03445 PF02167 Cytochrome C1 family CPF11_03450 PF00032 Cytochrome b(C-terminal)/b6/petD CPF11_03450 PF00033 Cytochrome b(N-terminal)/b6/petB CPF11_03455 PF01218 Coproporphyrinogen III oxidase CPF11_03465 PF01713 Smr domain CPF11_03470 PF00034 Cytochrome c CPF11_03470 PF03150 Di-haem cytochrome c peroxidase CPF11_03470 PF14376 CPF11_03470 CPF11_03475 PF01555 DNA methylase CPF11_03480 PF04280 Tim44-like domain CPF11_03485 PF00300 Histidine phosphatase superfamily (branch 1) CPF11_03490 PF02556 Preprotein translocase subunit SecB CPF11_03495 PF02602 Uroporphyrinogen-III synthase HemD CPF11_03500 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CPF11_03500 PF03900 Porphobilinogen deaminase, C-terminal domain CPF11_03505 PF00814 Glycoprotease family CPF11_03510 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ CPF11_03515 PF01914 CPF11_03515 CPF11_03520 PF03706 CPF11_03520 CPF11_03520 PF09924 Uncharacterized conserved protein (DUF2156) CPF11_03525 PF01921 tRNA synthetases class I (K) CPF11_03530 PF00994 Probable molybdopterin binding domain CPF11_03535 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CPF11_03540 PF00589 Phage integrase family CPF11_03540 PF02899 Phage integrase, N-terminal SAM-like domain CPF11_03550 PF01202 Shikimate kinase CPF11_03550 PF01761 3-dehydroquinate synthase CPF11_03555 PF00691 OmpA family CPF11_03560 PF04138 CPF11_03560 CPF11_03565 PF01411 tRNA synthetases class II (A) CPF11_03565 PF02272 DHHA1 domain CPF11_03565 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPF11_03570 PF02666 CPF11_03570 CPF11_03575 PF01066 CDP-alcohol phosphatidyltransferase CPF11_03575 PF08009 CPF11_03575 CPF11_03580 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CPF11_03585 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CPF11_03610 PF08241 Methyltransferase domain CPF11_03615 PF00753 Metallo-beta-lactamase superfamily CPF11_03615 PF16123 CPF11_03615 CPF11_03620 PF09898 CPF11_03620 CPF11_03625 PF01553 Acyltransferase CPF11_03630 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CPF11_03630 PF05221 S-adenosyl-L-homocysteine hydrolase CPF11_03635 PF12200 Domain of unknown function (DUF3597) CPF11_03645 PF00364 Biotin-requiring enzyme CPF11_03645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPF11_03645 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_03650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPF11_03650 PF00364 Biotin-requiring enzyme CPF11_03650 PF02817 e3 binding domain CPF11_03655 PF00676 Dehydrogenase E1 component CPF11_03655 PF02779 Transketolase, pyrimidine binding domain CPF11_03655 PF16078 CPF11_03655 CPF11_03655 PF16870 CPF11_03655 CPF11_03660 PF03969 AFG1-like ATPase CPF11_03665 PF02627 Carboxymuconolactone decarboxylase family CPF11_03670 PF03772 CPF11_03670 CPF11_03670 PF13567 CPF11_03670 CPF11_03675 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPF11_03680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPF11_03680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPF11_03685 PF01979 Amidohydrolase family CPF11_03690 PF02660 CPF11_03690 CPF11_03695 PF02481 DNA recombination-mediator protein A CPF11_03700 PF01131 DNA topoisomerase CPF11_03700 PF01396 CPF11_03700 CPF11_03700 PF01751 Toprim domain CPF11_03700 PF13368 CPF11_03700 CPF11_03705 PF00773 RNB domain CPF11_03710 PF03572 Peptidase family S41 CPF11_03715 PF07372 Protein of unknown function (DUF1491) CPF11_03720 PF00691 OmpA family CPF11_03725 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_03730 PF02082 Transcriptional regulator CPF11_03745 PF00204 DNA gyrase B CPF11_03745 PF00986 DNA gyrase B subunit, carboxyl terminus CPF11_03745 PF01751 Toprim domain CPF11_03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_03750 PF00892 EamA-like transporter family CPF11_03755 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CPF11_03760 PF01119 DNA mismatch repair protein, C-terminal domain CPF11_03760 PF08676 MutL C terminal dimerisation domain CPF11_03760 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_03765 PF11233 CPF11_03765 CPF11_03770 PF01252 CPF11_03770 CPF11_03775 PF00133 tRNA synthetases class I (I, L, M and V) CPF11_03775 PF06827 Zinc finger found in FPG and IleRS CPF11_03775 PF08264 Anticodon-binding domain of tRNA CPF11_03780 PF01687 Riboflavin kinase CPF11_03780 PF06574 FAD synthetase CPF11_03785 PF13419 Haloacid dehalogenase-like hydrolase CPF11_03790 PF03079 ARD/ARD' family CPF11_03795 PF00596 Class II Aldolase and Adducin N-terminal domain CPF11_03800 PF02416 mttA/Hcf106 family CPF11_03805 PF05257 CHAP domain CPF11_03810 PF02631 RecX family CPF11_03815 PF00202 Aminotransferase class-III CPF11_03820 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPF11_03820 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPF11_03830 PF01430 Hsp33 protein CPF11_03840 PF00271 Helicase conserved C-terminal domain CPF11_03840 PF04408 Helicase associated domain (HA2) CPF11_03840 PF08482 CPF11_03840 CPF11_03845 PF13180 PDZ domain CPF11_03845 PF13365 Trypsin-like peptidase domain CPF11_03850 PF00248 Aldo/keto reductase family CPF11_03855 PF04364 DNA polymerase III chi subunit, HolC CPF11_03860 PF00883 Cytosol aminopeptidase family, catalytic domain CPF11_03860 PF02789 Cytosol aminopeptidase family, N-terminal domain CPF11_03865 PF00459 Inositol monophosphatase family CPF11_03870 PF01300 Telomere recombination CPF11_03870 PF03481 Putative GTP-binding controlling metal-binding CPF11_03880 PF01565 FAD binding domain CPF11_03880 PF02913 FAD linked oxidases, C-terminal domain CPF11_03895 PF01923 Cobalamin adenosyltransferase CPF11_03900 PF04241 CPF11_03900 CPF11_03905 PF01728 FtsJ-like methyltransferase CPF11_03920 PF07866 Protein of unknown function (DUF1653) CPF11_03925 PF00501 AMP-binding enzyme CPF11_03925 PF13193 AMP-binding enzyme C-terminal domain CPF11_03925 PF16177 CPF11_03925 CPF11_03935 PF00392 Bacterial regulatory proteins, gntR family CPF11_03935 PF07729 FCD domain CPF11_03940 PF00171 Aldehyde dehydrogenase family CPF11_03940 PF01619 Proline dehydrogenase CPF11_03940 PF14850 DNA-binding domain of Proline dehydrogenase CPF11_03945 PF06912 CPF11_03945 CPF11_03950 PF00324 Amino acid permease CPF11_03970 PF13481 AAA domain CPF11_03970 PF13541 Subunit ChlI of Mg-chelatase CPF11_03980 PF02405 CPF11_03980 CPF11_03985 PF00005 ABC transporter CPF11_03990 PF00924 Mechanosensitive ion channel CPF11_03990 PF12607 CPF11_03990 CPF11_03995 PF00772 DnaB-like helicase N terminal domain CPF11_03995 PF03796 DnaB-like helicase C terminal domain CPF11_04000 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) CPF11_04005 PF00294 pfkB family carbohydrate kinase CPF11_04005 PF01467 Cytidylyltransferase CPF11_04010 PF00625 Guanylate kinase CPF11_04015 PF00106 short chain dehydrogenase CPF11_04020 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CPF11_04025 PF00588 SpoU rRNA Methylase family CPF11_04025 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPF11_04030 PF01612 3'-5' exonuclease CPF11_04035 PF00571 CBS domain CPF11_04035 PF01380 SIS domain CPF11_04040 PF06835 Lipopolysaccharide-assembly, LptC-related CPF11_04045 PF03968 OstA-like protein CPF11_04050 PF00005 ABC transporter CPF11_04050 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPF11_04055 PF03473 MOSC domain CPF11_04055 PF03476 MOSC N-terminal beta barrel domain CPF11_04065 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CPF11_04065 PF16321 CPF11_04065 CPF11_04075 PF00011 Hsp20/alpha crystallin family CPF11_04085 PF01327 Polypeptide deformylase CPF11_04090 PF00551 Formyl transferase CPF11_04090 PF02911 Formyl transferase, C-terminal domain CPF11_04095 PF01416 tRNA pseudouridine synthase CPF11_04105 PF01546 Peptidase family M20/M25/M40 CPF11_04105 PF07687 Peptidase dimerisation domain CPF11_04110 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_04110 PF14602 Hexapeptide repeat of succinyl-transferase CPF11_04110 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CPF11_04115 PF00696 Amino acid kinase family CPF11_04120 PF01926 50S ribosome-binding GTPase CPF11_04125 PF02096 60Kd inner membrane protein CPF11_04125 PF14849 YidC periplasmic domain CPF11_04130 PF00825 Ribonuclease P CPF11_04135 PF00468 Ribosomal protein L34 CPF11_04145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPF11_04150 PF06230 Protein of unknown function (DUF1009) CPF11_04155 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_04155 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CPF11_04160 PF07977 FabA-like domain CPF11_04165 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_04165 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CPF11_04170 PF03938 Outer membrane protein (OmpH-like) CPF11_04175 PF01103 Surface antigen CPF11_04175 PF07244 Surface antigen variable number repeat CPF11_04180 PF02163 Peptidase family M50 CPF11_04180 PF13180 PDZ domain CPF11_04185 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CPF11_04185 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CPF11_04185 PF13288 DXP reductoisomerase C-terminal domain CPF11_04190 PF01148 Cytidylyltransferase family CPF11_04195 PF01255 Putative undecaprenyl diphosphate synthase CPF11_04200 PF01765 Ribosome recycling factor CPF11_04205 PF00696 Amino acid kinase family CPF11_04210 PF01926 50S ribosome-binding GTPase CPF11_04210 PF07650 KH domain CPF11_04215 PF00035 Double-stranded RNA binding motif CPF11_04215 PF14622 Ribonuclease-III-like CPF11_04220 PF00717 Peptidase S24-like CPF11_04225 PF01648 4'-phosphopantetheinyl transferase superfamily CPF11_04230 PF02824 TGS domain CPF11_04230 PF04607 Region found in RelA / SpoT proteins CPF11_04230 PF13291 ACT domain CPF11_04230 PF13328 HD domain CPF11_04235 PF01192 RNA polymerase Rpb6 CPF11_04240 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CPF11_04245 PF01936 NYN domain CPF11_04250 PF00484 Carbonic anhydrase CPF11_04255 PF03372 Endonuclease/Exonuclease/phosphatase family CPF11_04260 PF00270 DEAD/DEAH box helicase CPF11_04260 PF00271 Helicase conserved C-terminal domain CPF11_04265 PF07021 Methionine biosynthesis protein MetW CPF11_04270 PF00561 alpha/beta hydrolase fold CPF11_04275 PF00009 Elongation factor Tu GTP binding domain CPF11_04275 PF00679 Elongation factor G C-terminus CPF11_04275 PF03144 Elongation factor Tu domain 2 CPF11_04275 PF06421 GTP-binding protein LepA C-terminus CPF11_04290 PF01011 PQQ enzyme repeat CPF11_04295 PF03544 Gram-negative bacterial TonB protein C-terminal CPF11_04300 PF00120 Glutamine synthetase, catalytic domain CPF11_04300 PF03951 Glutamine synthetase, beta-Grasp domain CPF11_04305 PF00543 Nitrogen regulatory protein P-II CPF11_04310 PF00155 Aminotransferase class I and II CPF11_04335 PF00180 Isocitrate/isopropylmalate dehydrogenase CPF11_04340 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_04345 PF01266 FAD dependent oxidoreductase CPF11_04355 PF00009 Elongation factor Tu GTP binding domain CPF11_04355 PF00679 Elongation factor G C-terminus CPF11_04355 PF03144 Elongation factor Tu domain 2 CPF11_04365 PF07690 Major Facilitator Superfamily CPF11_04370 PF08450 SMP-30/Gluconolaconase/LRE-like region CPF11_04375 PF00224 Pyruvate kinase, barrel domain CPF11_04375 PF02887 Pyruvate kinase, alpha/beta domain CPF11_04380 PF06347 Bacterial SH3 domain CPF11_04385 PF00899 ThiF family CPF11_04390 PF11159 CPF11_04390 CPF11_04395 PF11324 CPF11_04395 CPF11_04410 PF13372 Alginate export CPF11_04420 PF03169 CPF11_04420 CPF11_04430 PF00582 Universal stress protein family CPF11_04435 PF12697 Alpha/beta hydrolase family CPF11_04440 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_04445 PF01545 Cation efflux family CPF11_04450 PF01545 Cation efflux family CPF11_04450 PF16916 CPF11_04450 CPF11_04460 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPF11_04460 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPF11_04465 PF00400 WD domain, G-beta repeat CPF11_04470 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_04480 PF00011 Hsp20/alpha crystallin family CPF11_04485 PF00364 Biotin-requiring enzyme CPF11_04485 PF00561 alpha/beta hydrolase fold CPF11_04490 PF02779 Transketolase, pyrimidine binding domain CPF11_04490 PF02780 Transketolase, C-terminal domain CPF11_04495 PF00676 Dehydrogenase E1 component CPF11_04505 PF01384 CPF11_04505 CPF11_04510 PF03976 Polyphosphate kinase 2 (PPK2) CPF11_04515 PF13403 Hint domain CPF11_04525 PF00593 TonB dependent receptor CPF11_04530 PF01431 Peptidase family M13 CPF11_04530 PF05649 Peptidase family M13 CPF11_04535 PF03544 Gram-negative bacterial TonB protein C-terminal CPF11_04540 PF13403 Hint domain CPF11_04545 PF03061 Thioesterase superfamily CPF11_04560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPF11_04565 PF13403 Hint domain CPF11_04565 PF13692 Glycosyl transferases group 1 CPF11_04570 PF02537 CPF11_04570 CPF11_04575 PF00106 short chain dehydrogenase CPF11_04580 PF02082 Transcriptional regulator CPF11_04585 PF04343 CPF11_04585 CPF11_04590 PF00551 Formyl transferase CPF11_04590 PF13740 ACT domain CPF11_04600 PF11776 Domain of unknown function (DUF3315) CPF11_04605 PF04973 CPF11_04605 CPF11_04610 PF01636 Phosphotransferase enzyme family CPF11_04615 PF00593 TonB dependent receptor CPF11_04615 PF07715 TonB-dependent Receptor Plug Domain CPF11_04620 PF00999 Sodium/hydrogen exchanger family CPF11_04640 PF11041 CPF11_04640 CPF11_04645 PF04865 CPF11_04645 CPF11_04690 PF11863 CPF11_04690 CPF11_04705 PF13262 CPF11_04705 CPF11_04715 PF09950 CPF11_04715 CPF11_04725 PF09979 CPF11_04725 CPF11_04730 PF06381 CPF11_04730 CPF11_04735 PF00581 Rhodanese-like domain CPF11_04740 PF03237 Terminase-like family CPF11_04740 PF17289 CPF11_04740 CPF11_04760 PF01757 CPF11_04760 CPF11_04765 PF02310 B12 binding domain CPF11_04765 PF04055 Radical SAM superfamily CPF11_04775 PF00239 Resolvase, N terminal domain CPF11_04775 PF04545 Sigma-70, region 4 CPF11_04780 PF13403 Hint domain CPF11_04795 PF13412 Winged helix-turn-helix DNA-binding CPF11_04805 PF01381 Helix-turn-helix CPF11_04810 PF13403 Hint domain CPF11_04820 PF01810 CPF11_04820 CPF11_04825 PF13403 Hint domain CPF11_04840 PF01266 FAD dependent oxidoreductase CPF11_04845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_04850 PF00593 TonB dependent receptor CPF11_04850 PF07715 TonB-dependent Receptor Plug Domain CPF11_04855 PF06776 Invasion associated locus B (IalB) protein CPF11_04870 PF13403 Hint domain CPF11_04875 PF03724 META domain CPF11_04880 PF07452 CPF11_04880 CPF11_04895 PF06912 CPF11_04895 CPF11_04920 PF02325 CPF11_04920 CPF11_04930 PF00239 Resolvase, N terminal domain CPF11_04930 PF13936 Helix-turn-helix domain CPF11_04935 PF13403 Hint domain CPF11_04945 PF07690 Major Facilitator Superfamily CPF11_04950 PF13403 Hint domain CPF11_04965 PF08241 Methyltransferase domain CPF11_04970 PF04577 CPF11_04970 CPF11_04975 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_04975 PF01799 [2Fe-2S] binding domain CPF11_04980 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_04985 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_04990 PF00171 Aldehyde dehydrogenase family CPF11_04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_04995 PF03466 LysR substrate binding domain CPF11_05000 PF00248 Aldo/keto reductase family CPF11_05015 PF07642 CPF11_05015 CPF11_05025 PF02975 Methylamine dehydrogenase, L chain CPF11_05035 PF07291 CPF11_05035 CPF11_05040 PF06433 Methylamine dehydrogenase heavy chain (MADH) CPF11_05045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_05045 PF03466 LysR substrate binding domain CPF11_05050 PF05232 CPF11_05050 CPF11_05055 PF00535 Glycosyl transferase family 2 CPF11_05065 PF09913 CPF11_05065 CPF11_05070 PF04324 BFD-like [2Fe-2S] binding domain CPF11_05075 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPF11_05075 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CPF11_05080 PF00210 Ferritin-like domain CPF11_05085 PF13403 Hint domain CPF11_05090 PF00155 Aminotransferase class I and II CPF11_05095 PF01594 CPF11_05095 CPF11_05100 PF13430 CPF11_05100 CPF11_05105 PF01641 SelR domain CPF11_05110 PF00875 DNA photolyase CPF11_05110 PF03441 FAD binding domain of DNA photolyase CPF11_05115 PF13403 Hint domain CPF11_05120 PF00196 Bacterial regulatory proteins, luxR family CPF11_05125 PF00474 Sodium:solute symporter family CPF11_05135 PF01869 BadF/BadG/BcrA/BcrD ATPase family CPF11_05140 PF00728 Glycosyl hydrolase family 20, catalytic domain CPF11_05140 PF02838 Glycosyl hydrolase family 20, domain 2 CPF11_05145 PF00005 ABC transporter CPF11_05150 PF01032 FecCD transport family CPF11_05155 PF01497 Periplasmic binding protein CPF11_05160 PF00593 TonB dependent receptor CPF11_05160 PF07715 TonB-dependent Receptor Plug Domain CPF11_05165 PF00999 Sodium/hydrogen exchanger family CPF11_05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_05170 PF03466 LysR substrate binding domain CPF11_05175 PF13561 Enoyl-(Acyl carrier protein) reductase CPF11_05180 PF00593 TonB dependent receptor CPF11_05190 PF06897 CPF11_05190 CPF11_05210 PF00300 Histidine phosphatase superfamily (branch 1) CPF11_05215 PF00156 Phosphoribosyl transferase domain CPF11_05215 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CPF11_05220 PF01061 CPF11_05220 CPF11_05225 PF00005 ABC transporter CPF11_05230 PF01554 MatE CPF11_05240 PF09335 CPF11_05240 CPF11_05245 PF00106 short chain dehydrogenase CPF11_05255 PF00288 GHMP kinases N terminal domain CPF11_05255 PF08544 GHMP kinases C terminal CPF11_05260 PF09976 Tetratricopeptide repeat CPF11_05260 PF13414 TPR repeat CPF11_05260 PF13432 Tetratricopeptide repeat CPF11_05265 PF03167 Uracil DNA glycosylase superfamily CPF11_05270 PF01464 Transglycosylase SLT domain CPF11_05275 PF00571 CBS domain CPF11_05275 PF01595 CPF11_05275 CPF11_05275 PF03471 Transporter associated domain CPF11_05280 PF04055 Radical SAM superfamily CPF11_05280 PF11946 CPF11_05280 CPF11_05295 PF02779 Transketolase, pyrimidine binding domain CPF11_05295 PF02780 Transketolase, C-terminal domain CPF11_05295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CPF11_05300 PF05494 Toluene tolerance, Ttg2 CPF11_05305 PF13506 Glycosyl transferase family 21 CPF11_05310 PF04055 Radical SAM superfamily CPF11_05315 PF04794 YdjC-like protein CPF11_05320 PF04966 Carbohydrate-selective porin, OprB family CPF11_05330 PF00692 dUTPase CPF11_05335 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPF11_05340 PF13536 Multidrug resistance efflux transporter CPF11_05345 PF02589 Uncharacterised ACR, YkgG family COG1556 CPF11_05350 PF02589 Uncharacterised ACR, YkgG family COG1556 CPF11_05350 PF13183 4Fe-4S dicluster domain CPF11_05355 PF02754 CPF11_05355 CPF11_05360 PF00205 Thiamine pyrophosphate enzyme, central domain CPF11_05360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_05360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPF11_05370 PF00205 Thiamine pyrophosphate enzyme, central domain CPF11_05370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_05370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPF11_05375 PF03306 Alpha-acetolactate decarboxylase CPF11_05380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_05380 PF03466 LysR substrate binding domain CPF11_05385 PF00581 Rhodanese-like domain CPF11_05390 PF02590 Predicted SPOUT methyltransferase CPF11_05395 PF02410 Oligomerisation domain CPF11_05400 PF01467 Cytidylyltransferase CPF11_05405 PF00171 Aldehyde dehydrogenase family CPF11_05410 PF01926 50S ribosome-binding GTPase CPF11_05410 PF06071 Protein of unknown function (DUF933) CPF11_05415 PF01195 Peptidyl-tRNA hydrolase CPF11_05420 PF01386 Ribosomal L25p family CPF11_05420 PF14693 Ribosomal protein TL5, C-terminal domain CPF11_05425 PF01212 Beta-eliminating lyase CPF11_05430 PF00152 tRNA synthetases class II (D, K and N) CPF11_05430 PF01336 OB-fold nucleic acid binding domain CPF11_05430 PF02938 GAD domain CPF11_05435 PF08904 CPF11_05435 CPF11_05445 PF02073 Thermophilic metalloprotease (M29) CPF11_05450 PF07799 CPF11_05450 CPF11_05460 PF07690 Major Facilitator Superfamily CPF11_05465 PF00501 AMP-binding enzyme CPF11_05465 PF13193 AMP-binding enzyme C-terminal domain CPF11_05465 PF16177 CPF11_05465 CPF11_05470 PF13714 Phosphoenolpyruvate phosphomutase CPF11_05475 PF00285 Citrate synthase CPF11_05480 PF03972 MmgE/PrpD family CPF11_05485 PF01381 Helix-turn-helix CPF11_05485 PF06114 Domain of unknown function (DUF955) CPF11_05485 PF09856 CPF11_05485 CPF11_05490 PF10938 YfdX protein CPF11_05500 PF01223 DNA/RNA non-specific endonuclease CPF11_05510 PF01757 CPF11_05510 CPF11_05520 PF08795 CPF11_05520 CPF11_05540 PF07486 Cell Wall Hydrolase CPF11_05550 PF08757 CPF11_05550 CPF11_05560 PF13884 Chaperone of endosialidase CPF11_05575 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPF11_05580 PF00501 AMP-binding enzyme CPF11_05585 PF00107 Zinc-binding dehydrogenase CPF11_05585 PF00550 Phosphopantetheine attachment site CPF11_05585 PF08659 KR domain CPF11_05585 PF14765 Polyketide synthase dehydratase CPF11_05595 PF00109 Beta-ketoacyl synthase, N-terminal domain CPF11_05595 PF00698 Acyl transferase domain CPF11_05595 PF02801 Beta-ketoacyl synthase, C-terminal domain CPF11_05595 PF16197 CPF11_05595 CPF11_05600 PF00501 AMP-binding enzyme CPF11_05605 PF13403 Hint domain CPF11_05610 PF13403 Hint domain CPF11_05615 PF04014 Antidote-toxin recognition MazE CPF11_05620 PF02661 Fic/DOC family CPF11_05625 PF02384 N-6 DNA Methylase CPF11_05625 PF12161 HsdM N-terminal domain CPF11_05630 PF01420 Type I restriction modification DNA specificity domain CPF11_05635 PF14267 CPF11_05635 CPF11_05640 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CPF11_05640 PF04851 Type III restriction enzyme, res subunit CPF11_05650 PF05013 N-formylglutamate amidohydrolase CPF11_05655 PF00183 Hsp90 protein CPF11_05655 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_05660 PF10696 CPF11_05660 CPF11_05665 PF03819 MazG nucleotide pyrophosphohydrolase domain CPF11_05670 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPF11_05675 PF13561 Enoyl-(Acyl carrier protein) reductase CPF11_05680 PF13403 Hint domain CPF11_05690 PF13437 HlyD family secretion protein CPF11_05690 PF13533 Biotin-lipoyl like CPF11_05695 PF00005 ABC transporter CPF11_05695 PF00664 ABC transporter transmembrane region CPF11_05695 PF03412 Peptidase C39 family CPF11_05700 PF00107 Zinc-binding dehydrogenase CPF11_05700 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_05705 PF00571 CBS domain CPF11_05705 PF01595 CPF11_05705 CPF11_05705 PF03471 Transporter associated domain CPF11_05725 PF07396 Phosphate-selective porin O and P CPF11_05730 PF12849 PBP superfamily domain CPF11_05735 PF00512 His Kinase A (phospho-acceptor) domain CPF11_05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_05740 PF00072 Response regulator receiver domain CPF11_05740 PF00486 Transcriptional regulatory protein, C terminal CPF11_05745 PF00709 Adenylosuccinate synthetase CPF11_05750 PF13393 Histidyl-tRNA synthetase CPF11_05755 PF01935 Domain of unknown function DUF87 CPF11_05760 PF03486 HI0933-like protein CPF11_05765 PF00290 Tryptophan synthase alpha chain CPF11_05770 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_05775 PF00589 Phage integrase family CPF11_05785 PF14384 CPF11_05785 CPF11_05790 PF04365 Protein of unknown function (DUF497) CPF11_05795 PF01544 CorA-like Mg2+ transporter protein CPF11_05805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPF11_05805 PF07497 Rho termination factor, RNA-binding domain CPF11_05805 PF07498 Rho termination factor, N-terminal domain CPF11_05810 PF01206 Sulfurtransferase TusA CPF11_05815 PF01475 Ferric uptake regulator family CPF11_05820 PF13444 Acetyltransferase (GNAT) domain CPF11_05825 PF00795 Carbon-nitrogen hydrolase CPF11_05830 PF01381 Helix-turn-helix CPF11_05835 PF09849 CPF11_05835 CPF11_05840 PF02091 Glycyl-tRNA synthetase alpha subunit CPF11_05845 PF02092 CPF11_05845 CPF11_05845 PF05746 DALR anticodon binding domain CPF11_05850 PF00892 EamA-like transporter family CPF11_05855 PF07043 CPF11_05855 CPF11_05865 PF01808 AICARFT/IMPCHase bienzyme CPF11_05865 PF02142 MGS-like domain CPF11_05870 PF02390 Putative methyltransferase CPF11_05875 PF00438 S-adenosylmethionine synthetase, N-terminal domain CPF11_05875 PF02772 S-adenosylmethionine synthetase, central domain CPF11_05875 PF02773 S-adenosylmethionine synthetase, C-terminal domain CPF11_05885 PF01113 Dihydrodipicolinate reductase, N-terminus CPF11_05885 PF05173 Dihydrodipicolinate reductase, C-terminus CPF11_05890 PF00226 DnaJ domain CPF11_05890 PF00684 DnaJ central domain CPF11_05890 PF01556 DnaJ C terminal domain CPF11_05895 PF00012 Hsp70 protein CPF11_05900 PF01025 GrpE CPF11_05905 PF00072 Response regulator receiver domain CPF11_05905 PF00486 Transcriptional regulatory protein, C terminal CPF11_05910 PF00512 His Kinase A (phospho-acceptor) domain CPF11_05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_05910 PF13755 CPF11_05910 CPF11_05910 PF13756 CPF11_05910 CPF11_05920 PF03668 CPF11_05920 CPF11_05925 PF02622 Uncharacterized ACR, COG1678 CPF11_05930 PF03976 Polyphosphate kinase 2 (PPK2) CPF11_05935 PF11948 CPF11_05935 CPF11_05940 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_05940 PF02861 Clp amino terminal domain CPF11_05940 PF07724 AAA domain (Cdc48 subfamily) CPF11_05940 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_05945 PF02617 ATP-dependent Clp protease adaptor protein ClpS CPF11_05950 PF00768 D-alanyl-D-alanine carboxypeptidase CPF11_05955 PF00557 Metallopeptidase family M24 CPF11_05960 PF01019 Gamma-glutamyltranspeptidase CPF11_05965 PF04055 Radical SAM superfamily CPF11_05965 PF12544 Lysine-2,3-aminomutase CPF11_05965 PF13353 4Fe-4S single cluster domain CPF11_05970 PF00152 tRNA synthetases class II (D, K and N) CPF11_05980 PF02469 Fasciclin domain CPF11_05985 PF10696 CPF11_05985 CPF11_05990 PF02581 Thiamine monophosphate synthase/TENI CPF11_05995 PF01791 DeoC/LacD family aldolase CPF11_06020 PF01812 5-formyltetrahydrofolate cyclo-ligase family CPF11_06025 PF13277 YmdB-like protein CPF11_06030 PF00293 NUDIX domain CPF11_06035 PF13242 HAD-hyrolase-like CPF11_06035 PF13344 Haloacid dehalogenase-like hydrolase CPF11_06040 PF01180 Dihydroorotate dehydrogenase CPF11_06050 PF00817 impB/mucB/samB family CPF11_06050 PF11798 IMS family HHH motif CPF11_06050 PF11799 impB/mucB/samB family C-terminal domain CPF11_06055 PF00324 Amino acid permease CPF11_06065 PF00535 Glycosyl transferase family 2 CPF11_06075 PF00702 haloacid dehalogenase-like hydrolase CPF11_06085 PF00675 Insulinase (Peptidase family M16) CPF11_06085 PF05193 Peptidase M16 inactive domain CPF11_06090 PF13640 2OG-Fe(II) oxygenase superfamily CPF11_06095 PF00271 Helicase conserved C-terminal domain CPF11_06095 PF02151 UvrB/uvrC motif CPF11_06095 PF04851 Type III restriction enzyme, res subunit CPF11_06095 PF12344 Ultra-violet resistance protein B CPF11_06105 PF00248 Aldo/keto reductase family CPF11_06110 PF00293 NUDIX domain CPF11_06115 PF00535 Glycosyl transferase family 2 CPF11_06115 PF13692 Glycosyl transferases group 1 CPF11_06120 PF02600 Disulfide bond formation protein DsbB CPF11_06125 PF00982 Glycosyltransferase family 20 CPF11_06130 PF02358 Trehalose-phosphatase CPF11_06135 PF09923 CPF11_06135 CPF11_06145 PF02470 CPF11_06145 CPF11_06150 PF05071 CPF11_06150 CPF11_06160 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease CPF11_06165 PF04339 CPF11_06165 CPF11_06170 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CPF11_06170 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CPF11_06175 PF02219 Methylenetetrahydrofolate reductase CPF11_06185 PF01161 Phosphatidylethanolamine-binding protein CPF11_06195 PF02547 Queuosine biosynthesis protein CPF11_06200 PF01702 Queuine tRNA-ribosyltransferase CPF11_06205 PF08331 CPF11_06205 CPF11_06205 PF13484 CPF11_06205 CPF11_06210 PF13467 Ribbon-helix-helix domain CPF11_06215 PF05099 Tellurite resistance protein TerB CPF11_06220 PF04333 CPF11_06220 CPF11_06225 PF05494 Toluene tolerance, Ttg2 CPF11_06230 PF13302 Acetyltransferase (GNAT) domain CPF11_06235 PF00005 ABC transporter CPF11_06235 PF12848 ABC transporter CPF11_06245 PF00719 Inorganic pyrophosphatase CPF11_06250 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CPF11_06255 PF04264 YceI-like domain CPF11_06265 PF02627 Carboxymuconolactone decarboxylase family CPF11_06270 PF00578 AhpC/TSA family CPF11_06275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_06275 PF03466 LysR substrate binding domain CPF11_06280 PF00444 Ribosomal protein L36 CPF11_06290 PF02153 Prephenate dehydrogenase CPF11_06295 PF03706 CPF11_06295 CPF11_06300 PF01370 NAD dependent epimerase/dehydratase family CPF11_06305 PF13641 Glycosyltransferase like family 2 CPF11_06310 PF00494 Squalene/phytoene synthase CPF11_06315 PF00494 Squalene/phytoene synthase CPF11_06320 PF01593 Flavin containing amine oxidoreductase CPF11_06325 PF13243 Prenyltransferase-like CPF11_06325 PF13249 Prenyltransferase-like CPF11_06330 PF01048 Phosphorylase superfamily CPF11_06340 PF02321 Outer membrane efflux protein CPF11_06345 PF13437 HlyD family secretion protein CPF11_06345 PF13533 Biotin-lipoyl like CPF11_06350 PF07869 CPF11_06350 CPF11_06355 PF01047 MarR family CPF11_06370 PF08402 TOBE domain CPF11_06375 PF13416 Bacterial extracellular solute-binding protein CPF11_06385 PF03692 CPF11_06385 CPF11_06390 PF01863 Protein of unknown function DUF45 CPF11_06400 PF00589 Phage integrase family CPF11_06420 PF05713 CPF11_06420 CPF11_06435 PF00239 Resolvase, N terminal domain CPF11_06455 PF01048 Phosphorylase superfamily CPF11_06460 PF00589 Phage integrase family CPF11_06470 PF12102 Domain of unknown function (DUF3578) CPF11_06470 PF13020 CPF11_06470 CPF11_06480 PF00589 Phage integrase family CPF11_06485 PF10592 CPF11_06485 CPF11_06495 PF01609 Transposase DDE domain CPF11_06495 PF05598 CPF11_06495 CPF11_06500 PF01609 Transposase DDE domain CPF11_06500 PF05598 CPF11_06500 CPF11_06505 PF07377 Protein of unknown function (DUF1493) CPF11_06510 PF00239 Resolvase, N terminal domain CPF11_06510 PF04218 CENP-B N-terminal DNA-binding domain CPF11_06525 PF12883 Protein of unknown function (DUF3828) CPF11_06545 PF13628 CPF11_06545 CPF11_06550 PF00005 ABC transporter CPF11_06555 PF00005 ABC transporter CPF11_06555 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPF11_06560 PF02653 CPF11_06560 CPF11_06565 PF02653 CPF11_06565 CPF11_06570 PF13433 Periplasmic binding protein domain CPF11_06575 PF00072 Response regulator receiver domain CPF11_06575 PF00512 His Kinase A (phospho-acceptor) domain CPF11_06575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_06580 PF00072 Response regulator receiver domain CPF11_06580 PF00196 Bacterial regulatory proteins, luxR family CPF11_06585 PF00795 Carbon-nitrogen hydrolase CPF11_06605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPF11_06615 PF00593 TonB dependent receptor CPF11_06615 PF07715 TonB-dependent Receptor Plug Domain CPF11_06625 PF00313 'Cold-shock' DNA-binding domain CPF11_06630 PF02321 Outer membrane efflux protein CPF11_06635 PF00873 AcrB/AcrD/AcrF family CPF11_06645 PF00529 HlyD family secretion protein CPF11_06645 PF16576 CPF11_06645 CPF11_06650 PF13520 Amino acid permease CPF11_06655 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CPF11_06660 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CPF11_06665 PF12625 CPF11_06665 CPF11_06665 PF12833 Helix-turn-helix domain CPF11_06670 PF13531 Bacterial extracellular solute-binding protein CPF11_06675 PF07396 Phosphate-selective porin O and P CPF11_06685 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_06690 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_06695 PF00005 ABC transporter CPF11_06700 PF00324 Amino acid permease CPF11_06705 PF07750 CPF11_06705 CPF11_06710 PF04519 CPF11_06710 CPF11_06715 PF00294 pfkB family carbohydrate kinase CPF11_06720 PF00570 HRDC domain CPF11_06720 PF01612 3'-5' exonuclease CPF11_06725 PF14489 QueF-like protein CPF11_06730 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CPF11_06735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPF11_06735 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPF11_06740 PF00231 ATP synthase CPF11_06745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPF11_06745 PF00306 ATP synthase alpha/beta chain, C terminal domain CPF11_06745 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPF11_06750 PF00213 ATP synthase delta (OSCP) subunit CPF11_06770 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CPF11_06775 PF02357 Transcription termination factor nusG CPF11_06780 PF00390 Malic enzyme, N-terminal domain CPF11_06780 PF03949 Malic enzyme, NAD binding domain CPF11_06785 PF00326 Prolyl oligopeptidase family CPF11_06785 PF07676 WD40-like Beta Propeller Repeat CPF11_06790 PF09335 CPF11_06790 CPF11_06795 PF00106 short chain dehydrogenase CPF11_06800 PF00271 Helicase conserved C-terminal domain CPF11_06800 PF12513 Mitochondrial degradasome RNA helicase subunit C terminal CPF11_06810 PF00175 Oxidoreductase NAD-binding domain CPF11_06810 PF00970 Oxidoreductase FAD-binding domain CPF11_06815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPF11_06815 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_06820 PF01979 Amidohydrolase family CPF11_06830 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CPF11_06835 PF02719 Polysaccharide biosynthesis protein CPF11_06835 PF13727 CoA-binding domain CPF11_06840 PF00953 Glycosyl transferase family 4 CPF11_06850 PF01047 MarR family CPF11_06855 PF00883 Cytosol aminopeptidase family, catalytic domain CPF11_06860 PF00271 Helicase conserved C-terminal domain CPF11_06865 PF00037 4Fe-4S binding domain CPF11_06865 PF11953 Domain of unknown function (DUF3470) CPF11_06865 PF12800 4Fe-4S binding domain CPF11_06870 PF03626 CPF11_06870 CPF11_06875 PF00510 Cytochrome c oxidase subunit III CPF11_06880 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPF11_06885 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CPF11_06885 PF06481 COX Aromatic Rich Motif CPF11_06895 PF01027 Inhibitor of apoptosis-promoting Bax1 CPF11_06905 PF13360 PQQ-like domain CPF11_06905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_06910 PF00034 Cytochrome c CPF11_06910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_06915 PF03167 Uracil DNA glycosylase superfamily CPF11_06920 PF05161 MOFRL family CPF11_06920 PF13660 Domain of unknown function (DUF4147) CPF11_06925 PF04632 CPF11_06925 CPF11_06930 PF00156 Phosphoribosyl transferase domain CPF11_06935 PF00072 Response regulator receiver domain CPF11_06935 PF00512 His Kinase A (phospho-acceptor) domain CPF11_06935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_06935 PF12860 CPF11_06935 CPF11_06940 PF07690 Major Facilitator Superfamily CPF11_06945 PF09335 CPF11_06945 CPF11_06950 PF02628 CPF11_06950 CPF11_06955 PF00682 HMGL-like CPF11_06955 PF08502 LeuA allosteric (dimerisation) domain CPF11_06960 PF06723 MreB/Mbl protein CPF11_06965 PF04085 rod shape-determining protein MreC CPF11_06975 PF00905 Penicillin binding protein transpeptidase domain CPF11_06975 PF03717 Penicillin-binding Protein dimerisation domain CPF11_06980 PF01098 CPF11_06980 CPF11_06990 PF02472 Biopolymer transport protein ExbD/TolR CPF11_06995 PF02472 Biopolymer transport protein ExbD/TolR CPF11_07000 PF01618 CPF11_07000 CPF11_07005 PF03544 Gram-negative bacterial TonB protein C-terminal CPF11_07015 PF00905 Penicillin binding protein transpeptidase domain CPF11_07015 PF00912 Transglycosylase CPF11_07015 PF17092 CPF11_07015 CPF11_07020 PF01628 HrcA protein C terminal domain CPF11_07025 PF01138 3' exoribonuclease family, domain 1 CPF11_07025 PF03725 3' exoribonuclease family, domain 2 CPF11_07030 PF01725 Ham1 family CPF11_07035 PF03022 Major royal jelly protein CPF11_07045 PF00575 S1 RNA binding domain CPF11_07050 PF02224 Cytidylate kinase CPF11_07055 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPF11_07060 PF09538 CPF11_07060 CPF11_07065 PF02152 Dihydroneopterin aldolase CPF11_07070 PF13561 Enoyl-(Acyl carrier protein) reductase CPF11_07075 PF02132 RecR protein CPF11_07075 PF13662 Toprim domain CPF11_07080 PF02575 YbaB/EbfC DNA-binding family CPF11_07085 PF12169 DNA polymerase III subunits gamma and tau domain III CPF11_07085 PF12362 CPF11_07085 CPF11_07085 PF13177 DNA polymerase III, delta subunit CPF11_07100 PF07690 Major Facilitator Superfamily CPF11_07105 PF01979 Amidohydrolase family CPF11_07110 PF13632 Glycosyl transferase family group 2 CPF11_07115 PF04349 Periplasmic glucan biosynthesis protein, MdoG CPF11_07120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_07125 PF00583 Acetyltransferase (GNAT) family CPF11_07130 PF00154 recA bacterial DNA recombination protein CPF11_07135 PF01019 Gamma-glutamyltranspeptidase CPF11_07140 PF13462 Thioredoxin CPF11_07145 PF00155 Aminotransferase class I and II CPF11_07155 PF00456 Transketolase, thiamine diphosphate binding domain CPF11_07155 PF02779 Transketolase, pyrimidine binding domain CPF11_07155 PF02780 Transketolase, C-terminal domain CPF11_07160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPF11_07160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPF11_07165 PF00162 Phosphoglycerate kinase CPF11_07170 PF00892 EamA-like transporter family CPF11_07175 PF13350 Tyrosine phosphatase family CPF11_07180 PF13085 2Fe-2S iron-sulfur cluster binding domain CPF11_07180 PF13534 4Fe-4S dicluster domain CPF11_07185 PF00890 FAD binding domain CPF11_07185 PF02910 Fumarate reductase flavoprotein C-term CPF11_07190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CPF11_07195 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CPF11_07200 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPF11_07200 PF02774 Semialdehyde dehydrogenase, dimerisation domain CPF11_07205 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CPF11_07205 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CPF11_07210 PF12769 Domain of unknown function (DUF3814) CPF11_07215 PF02233 NAD(P) transhydrogenase beta subunit CPF11_07220 PF00107 Zinc-binding dehydrogenase CPF11_07220 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_07225 PF00171 Aldehyde dehydrogenase family CPF11_07230 PF00266 Aminotransferase class-V CPF11_07245 PF02601 CPF11_07245 CPF11_07245 PF13742 CPF11_07245 CPF11_07250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPF11_07250 PF02843 Phosphoribosylglycinamide synthetase, C domain CPF11_07250 PF02844 Phosphoribosylglycinamide synthetase, N domain CPF11_07255 PF00583 Acetyltransferase (GNAT) family CPF11_07260 PF00814 Glycoprotease family CPF11_07265 PF00881 Nitroreductase family CPF11_07270 PF01106 NifU-like domain CPF11_07270 PF08712 Scaffold protein Nfu/NifU N terminal CPF11_07275 PF09848 Uncharacterized conserved protein (DUF2075) CPF11_07285 PF02633 Creatinine amidohydrolase CPF11_07295 PF00085 Thioredoxin CPF11_07295 PF14559 Tetratricopeptide repeat CPF11_07295 PF14561 Tetratricopeptide repeat CPF11_07300 PF02190 ATP-dependent protease La (LON) domain CPF11_07305 PF03966 Trm112p-like protein CPF11_07315 PF07690 Major Facilitator Superfamily CPF11_07320 PF13801 Heavy-metal resistance CPF11_07325 PF02639 CPF11_07325 CPF11_07330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPF11_07330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPF11_07330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPF11_07330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPF11_07340 PF02545 Maf-like protein CPF11_07345 PF01208 Uroporphyrinogen decarboxylase (URO-D) CPF11_07350 PF13419 Haloacid dehalogenase-like hydrolase CPF11_07355 PF03653 CPF11_07355 CPF11_07360 PF00293 NUDIX domain CPF11_07365 PF07690 Major Facilitator Superfamily CPF11_07370 PF03641 Possible lysine decarboxylase CPF11_07390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPF11_07395 PF01926 50S ribosome-binding GTPase CPF11_07395 PF10396 GTP-binding protein TrmE N-terminus CPF11_07395 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE CPF11_07400 PF01134 Glucose inhibited division protein A CPF11_07400 PF13932 GidA associated domain 3 CPF11_07405 PF02527 rRNA small subunit methyltransferase G CPF11_07410 PF13614 AAA domain CPF11_07415 PF02195 ParB-like nuclease domain CPF11_07425 PF00239 Resolvase, N terminal domain CPF11_07425 PF02796 Helix-turn-helix domain of resolvase CPF11_07430 PF06048 CPF11_07430 CPF11_07435 PF13362 Toprim domain CPF11_07445 PF02498 CPF11_07445 CPF11_07445 PF03374 CPF11_07445 CPF11_07450 PF12728 Helix-turn-helix domain CPF11_07475 PF13560 Helix-turn-helix domain CPF11_07485 PF00589 Phage integrase family CPF11_07485 PF13356 Domain of unknown function (DUF4102) CPF11_07495 PF00043 Glutathione S-transferase, C-terminal domain CPF11_07495 PF02798 Glutathione S-transferase, N-terminal domain CPF11_07500 PF06146 CPF11_07500 CPF11_07505 PF13811 CPF11_07505 CPF11_07510 PF01494 FAD binding domain CPF11_07515 PF00881 Nitroreductase family CPF11_07520 PF01230 HIT domain CPF11_07525 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CPF11_07530 PF00977 Histidine biosynthesis protein CPF11_07535 PF00583 Acetyltransferase (GNAT) family CPF11_07535 PF00977 Histidine biosynthesis protein CPF11_07540 PF00117 Glutamine amidotransferase class-I CPF11_07545 PF00475 Imidazoleglycerol-phosphate dehydratase CPF11_07550 PF00795 Carbon-nitrogen hydrolase CPF11_07550 PF02540 NAD synthase CPF11_07560 PF00535 Glycosyl transferase family 2 CPF11_07560 PF13524 Glycosyl transferases group 1 CPF11_07570 PF00534 Glycosyl transferases group 1 CPF11_07570 PF13579 Glycosyl transferase 4-like domain CPF11_07570 PF13692 Glycosyl transferases group 1 CPF11_07575 PF05045 CPF11_07575 CPF11_07580 PF00216 Bacterial DNA-binding protein CPF11_07585 PF05977 Transmembrane secretion effector CPF11_07600 PF03807 NADP oxidoreductase coenzyme F420-dependent CPF11_07600 PF14748 Pyrroline-5-carboxylate reductase dimerisation CPF11_07605 PF10722 Putative bacterial sensory transduction regulator CPF11_07610 PF04380 CPF11_07610 CPF11_07615 PF00226 DnaJ domain CPF11_07615 PF01556 DnaJ C terminal domain CPF11_07625 PF10014 2OG-Fe dioxygenase CPF11_07635 PF06271 CPF11_07635 CPF11_07640 PF01960 ArgJ family CPF11_07645 PF13616 PPIC-type PPIASE domain CPF11_07650 PF01043 SecA preprotein cross-linking domain CPF11_07650 PF02810 SEC-C motif CPF11_07650 PF07516 SecA Wing and Scaffold domain CPF11_07650 PF07517 SecA DEAD-like domain CPF11_07655 PF01709 Transcriptional regulator CPF11_07660 PF02075 Crossover junction endodeoxyribonuclease RuvC CPF11_07665 PF01330 RuvA N terminal domain CPF11_07665 PF07499 RuvA, C-terminal domain CPF11_07665 PF14520 Helix-hairpin-helix domain CPF11_07670 PF05491 Holliday junction DNA helicase ruvB C-terminus CPF11_07670 PF05496 Holliday junction DNA helicase ruvB N-terminus CPF11_07675 PF13279 Thioesterase-like superfamily CPF11_07680 PF01618 CPF11_07680 CPF11_07685 PF02472 Biopolymer transport protein ExbD/TolR CPF11_07695 PF04052 TolB amino-terminal domain CPF11_07695 PF07676 WD40-like Beta Propeller Repeat CPF11_07700 PF00691 OmpA family CPF11_07710 PF01171 PP-loop family CPF11_07715 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_07715 PF01434 Peptidase family M41 CPF11_07715 PF06480 FtsH Extracellular CPF11_07720 PF00809 Pterin binding enzyme CPF11_07725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPF11_07725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPF11_07725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPF11_07725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPF11_07730 PF00072 Response regulator receiver domain CPF11_07730 PF00486 Transcriptional regulatory protein, C terminal CPF11_07735 PF02367 Uncharacterised P-loop hydrolase UPF0079 CPF11_07740 PF12705 PD-(D/E)XK nuclease superfamily CPF11_07745 PF00580 UvrD/REP helicase N-terminal domain CPF11_07745 PF12705 PD-(D/E)XK nuclease superfamily CPF11_07745 PF13361 UvrD-like helicase C-terminal domain CPF11_07750 PF00085 Thioredoxin CPF11_07755 PF01039 Carboxyl transferase domain CPF11_07760 PF08245 Mur ligase middle domain CPF11_07770 PF01406 tRNA synthetases class I (C) catalytic domain CPF11_07770 PF09190 DALR domain CPF11_07775 PF00588 SpoU rRNA Methylase family CPF11_07780 PF12146 Putative lysophospholipase CPF11_07785 PF00266 Aminotransferase class-V CPF11_07790 PF00266 Aminotransferase class-V CPF11_07795 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_07800 PF03054 tRNA methyl transferase CPF11_07805 PF13409 Glutathione S-transferase, N-terminal domain CPF11_07810 PF00534 Glycosyl transferases group 1 CPF11_07810 PF13439 Glycosyltransferase Family 4 CPF11_07815 PF00849 RNA pseudouridylate synthase CPF11_07820 PF01580 FtsK/SpoIIIE family CPF11_07820 PF09397 Ftsk gamma domain CPF11_07820 PF13491 CPF11_07820 CPF11_07825 PF00535 Glycosyl transferase family 2 CPF11_07830 PF04321 RmlD substrate binding domain CPF11_07835 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CPF11_07840 PF00483 Nucleotidyl transferase CPF11_07845 PF16363 CPF11_07845 CPF11_07855 PF00300 Histidine phosphatase superfamily (branch 1) CPF11_07860 PF01523 Putative modulator of DNA gyrase CPF11_07865 PF00579 tRNA synthetases class I (W and Y) CPF11_07875 PF00534 Glycosyl transferases group 1 CPF11_07885 PF01258 Prokaryotic dksA/traR C4-type zinc finger CPF11_07890 PF04932 CPF11_07890 CPF11_07895 PF00436 Single-strand binding protein family CPF11_07900 PF03602 Conserved hypothetical protein 95 CPF11_07905 PF00849 RNA pseudouridylate synthase CPF11_07905 PF01479 S4 domain CPF11_07910 PF07722 Peptidase C26 CPF11_07915 PF14437 CPF11_07915 CPF11_07920 PF13180 PDZ domain CPF11_07920 PF13365 Trypsin-like peptidase domain CPF11_07925 PF00027 Cyclic nucleotide-binding domain CPF11_07925 PF13545 Crp-like helix-turn-helix domain CPF11_07930 PF03922 OmpW family CPF11_07935 PF04055 Radical SAM superfamily CPF11_07935 PF06969 HemN C-terminal domain CPF11_07945 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase CPF11_07945 PF13450 NAD(P)-binding Rossmann-like domain CPF11_07950 PF01012 Electron transfer flavoprotein domain CPF11_07955 PF00766 Electron transfer flavoprotein FAD-binding domain CPF11_07955 PF01012 Electron transfer flavoprotein domain CPF11_07960 PF00440 Bacterial regulatory proteins, tetR family CPF11_07960 PF14246 AefR-like transcriptional repressor, C-terminal region CPF11_07965 PF02321 Outer membrane efflux protein CPF11_08000 PF06144 DNA polymerase III, delta subunit CPF11_08005 PF04390 Lipopolysaccharide-assembly CPF11_08010 PF00133 tRNA synthetases class I (I, L, M and V) CPF11_08010 PF08264 Anticodon-binding domain of tRNA CPF11_08010 PF13603 Leucyl-tRNA synthetase, Domain 2 CPF11_08015 PF12100 CPF11_08015 CPF11_08020 PF01464 Transglycosylase SLT domain CPF11_08020 PF05036 Sporulation related domain CPF11_08030 PF05258 CPF11_08030 CPF11_08035 PF00730 HhH-GPD superfamily base excision DNA repair protein CPF11_08035 PF14815 NUDIX domain CPF11_08040 PF00762 Ferrochelatase CPF11_08045 PF00633 Helix-hairpin-helix motif CPF11_08045 PF00730 HhH-GPD superfamily base excision DNA repair protein CPF11_08050 PF00005 ABC transporter CPF11_08050 PF00664 ABC transporter transmembrane region CPF11_08060 PF02637 GatB domain CPF11_08060 PF02934 GatB/GatE catalytic domain CPF11_08065 PF01425 Amidase CPF11_08070 PF02686 Glu-tRNAGln amidotransferase C subunit CPF11_08075 PF03652 Uncharacterised protein family (UPF0081) CPF11_08080 PF01387 Synuclein CPF11_08085 PF00202 Aminotransferase class-III CPF11_08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_08090 PF03466 LysR substrate binding domain CPF11_08095 PF04966 Carbohydrate-selective porin, OprB family CPF11_08100 PF09489 CPF11_08100 CPF11_08105 PF09490 CPF11_08105 CPF11_08110 PF04966 Carbohydrate-selective porin, OprB family CPF11_08115 PF10634 Fe2+ transport protein CPF11_08120 PF03239 CPF11_08120 CPF11_08125 PF13473 Cupredoxin-like domain CPF11_08135 PF01964 ThiC family CPF11_08135 PF13667 ThiC-associated domain CPF11_08140 PF00083 Sugar (and other) transporter CPF11_08145 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CPF11_08145 PF02785 Biotin carboxylase C-terminal domain CPF11_08145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPF11_08150 PF00364 Biotin-requiring enzyme CPF11_08155 PF01220 Dehydroquinase class II CPF11_08160 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel CPF11_08165 PF03631 CPF11_08165 CPF11_08170 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPF11_08170 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPF11_08175 PF10938 YfdX protein CPF11_08180 PF03379 CPF11_08180 CPF11_08185 PF00005 ABC transporter CPF11_08190 PF00330 Aconitase family (aconitate hydratase) CPF11_08190 PF00694 Aconitase C-terminal domain CPF11_08195 PF00005 ABC transporter CPF11_08200 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPF11_08200 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_08205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_08205 PF03466 LysR substrate binding domain CPF11_08215 PF07724 AAA domain (Cdc48 subfamily) CPF11_08225 PF02576 Uncharacterised BCR, YhbC family COG0779 CPF11_08225 PF17384 CPF11_08225 CPF11_08230 PF00575 S1 RNA binding domain CPF11_08230 PF08529 NusA N-terminal domain CPF11_08230 PF13184 NusA-like KH domain CPF11_08230 PF14520 Helix-hairpin-helix domain CPF11_08235 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CPF11_08235 PF04296 Protein of unknown function (DUF448) CPF11_08240 PF00009 Elongation factor Tu GTP binding domain CPF11_08240 PF04760 Translation initiation factor IF-2, N-terminal region CPF11_08240 PF08364 CPF11_08240 CPF11_08240 PF11987 Translation-initiation factor 2 CPF11_08245 PF02033 Ribosome-binding factor A CPF11_08250 PF01037 AsnC family CPF11_08250 PF13412 Winged helix-turn-helix DNA-binding CPF11_08255 PF00842 Alanine racemase, C-terminal domain CPF11_08255 PF01168 Alanine racemase, N-terminal domain CPF11_08260 PF01266 FAD dependent oxidoreductase CPF11_08265 PF10091 Putative glucoamylase CPF11_08270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPF11_08275 PF05681 CPF11_08275 CPF11_08275 PF05683 Fumarase C-terminus CPF11_08280 PF04386 Stringent starvation protein B CPF11_08290 PF02511 Thymidylate synthase complementing protein CPF11_08305 PF01883 Domain of unknown function DUF59 CPF11_08305 PF10609 ParA/MinD ATPase like CPF11_08310 PF10129 CPF11_08310 CPF11_08315 PF13472 GDSL-like Lipase/Acylhydrolase family CPF11_08320 PF13180 PDZ domain CPF11_08320 PF13365 Trypsin-like peptidase domain CPF11_08325 PF13515 CPF11_08325 CPF11_08330 PF00107 Zinc-binding dehydrogenase CPF11_08330 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_08340 PF00920 Dehydratase family CPF11_08345 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_08350 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_08355 PF00005 ABC transporter CPF11_08360 PF01895 PhoU domain CPF11_08375 PF00572 Ribosomal protein L13 CPF11_08380 PF00380 Ribosomal protein S9/S16 CPF11_08385 PF00450 Serine carboxypeptidase CPF11_08395 PF00270 DEAD/DEAH box helicase CPF11_08395 PF00271 Helicase conserved C-terminal domain CPF11_08395 PF03880 DbpA RNA binding domain CPF11_08405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPF11_08410 PF01678 Diaminopimelate epimerase CPF11_08415 PF00919 Uncharacterized protein family UPF0004 CPF11_08415 PF04055 Radical SAM superfamily CPF11_08420 PF00448 SRP54-type protein, GTPase domain CPF11_08420 PF02881 SRP54-type protein, helical bundle domain CPF11_08425 PF09527 CPF11_08425 CPF11_08430 PF00119 ATP synthase A chain CPF11_08435 PF00137 ATP synthase subunit C CPF11_08440 PF00430 ATP synthase B/B' CF(0) CPF11_08445 PF00430 ATP synthase B/B' CF(0) CPF11_08450 PF00535 Glycosyl transferase family 2 CPF11_08455 PF02366 CPF11_08455 CPF11_08465 PF04403 CPF11_08465 CPF11_08470 PF02470 CPF11_08470 CPF11_08475 PF03886 Protein of unknown function (DUF330) CPF11_08480 PF00156 Phosphoribosyl transferase domain CPF11_08480 PF13537 Glutamine amidotransferase domain CPF11_08485 PF02674 CPF11_08485 CPF11_08495 PF00809 Pterin binding enzyme CPF11_08495 PF02310 B12 binding domain CPF11_08495 PF02574 Homocysteine S-methyltransferase CPF11_08495 PF02607 B12 binding domain CPF11_08495 PF02965 Vitamin B12 dependent methionine synthase, activation domain CPF11_08505 PF00005 ABC transporter CPF11_08505 PF00664 ABC transporter transmembrane region CPF11_08510 PF13437 HlyD family secretion protein CPF11_08510 PF13533 Biotin-lipoyl like CPF11_08515 PF08238 Sel1 repeat CPF11_08520 PF00534 Glycosyl transferases group 1 CPF11_08520 PF13641 Glycosyltransferase like family 2 CPF11_08525 PF07538 CPF11_08525 CPF11_08530 PF00534 Glycosyl transferases group 1 CPF11_08530 PF12000 CPF11_08530 CPF11_08535 PF03886 Protein of unknown function (DUF330) CPF11_08540 PF02470 CPF11_08540 CPF11_08545 PF00005 ABC transporter CPF11_08550 PF02405 CPF11_08550 CPF11_08555 PF01509 TruB family pseudouridylate synthase (N terminal domain) CPF11_08555 PF09157 Pseudouridine synthase II TruB, C-terminal CPF11_08555 PF16198 CPF11_08555 CPF11_08560 PF00312 Ribosomal protein S15 CPF11_08565 PF00013 KH domain CPF11_08565 PF00575 S1 RNA binding domain CPF11_08565 PF01138 3' exoribonuclease family, domain 1 CPF11_08565 PF03725 3' exoribonuclease family, domain 2 CPF11_08565 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CPF11_08575 PF01679 CPF11_08575 CPF11_08580 PF00521 DNA gyrase/topoisomerase IV, subunit A CPF11_08580 PF03989 DNA gyrase C-terminal domain, beta-propeller CPF11_08585 PF01467 Cytidylyltransferase CPF11_08590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CPF11_08600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_08600 PF03466 LysR substrate binding domain CPF11_08610 PF02675 S-adenosylmethionine decarboxylase CPF11_08615 PF01564 Spermine/spermidine synthase CPF11_08615 PF17284 CPF11_08615 CPF11_08620 PF01571 Aminomethyltransferase folate-binding domain CPF11_08620 PF08669 Glycine cleavage T-protein C-terminal barrel domain CPF11_08625 PF01597 Glycine cleavage H-protein CPF11_08630 PF01212 Beta-eliminating lyase CPF11_08630 PF02347 Glycine cleavage system P-protein CPF11_08635 PF05257 CHAP domain CPF11_08640 PF01042 Endoribonuclease L-PSP CPF11_08645 PF12804 MobA-like NTP transferase domain CPF11_08650 PF02625 XdhC and CoxI family CPF11_08650 PF13478 XdhC Rossmann domain CPF11_08655 PF10116 CPF11_08655 CPF11_08660 PF00753 Metallo-beta-lactamase superfamily CPF11_08665 PF02643 Uncharacterized ACR, COG1430 CPF11_08670 PF16363 CPF11_08670 CPF11_08705 PF04542 Sigma-70 region 2 CPF11_08705 PF08281 Sigma-70, region 4 CPF11_08710 PF04773 FecR protein CPF11_08710 PF16220 CPF11_08710 CPF11_08715 PF00593 TonB dependent receptor CPF11_08715 PF07660 Secretin and TonB N terminus short domain CPF11_08715 PF07715 TonB-dependent Receptor Plug Domain CPF11_08730 PF11000 CPF11_08730 CPF11_08735 PF12728 Helix-turn-helix domain CPF11_08740 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPF11_08745 PF00589 Phage integrase family CPF11_08745 PF13356 Domain of unknown function (DUF4102) CPF11_08745 PF14659 Phage integrase, N-terminal SAM-like domain CPF11_08755 PF01047 MarR family CPF11_08760 PF01494 FAD binding domain CPF11_08765 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_08765 PF01799 [2Fe-2S] binding domain CPF11_08770 PF00034 Cytochrome c CPF11_08770 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_08770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_08780 PF00857 Isochorismatase family CPF11_08785 PF12697 Alpha/beta hydrolase family CPF11_08795 PF07690 Major Facilitator Superfamily CPF11_08800 PF04966 Carbohydrate-selective porin, OprB family CPF11_08805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_08805 PF03466 LysR substrate binding domain CPF11_08810 PF07690 Major Facilitator Superfamily CPF11_08815 PF00529 HlyD family secretion protein CPF11_08815 PF16576 CPF11_08815 CPF11_08820 PF02321 Outer membrane efflux protein CPF11_08830 PF03960 ArsC family CPF11_08835 PF00916 CPF11_08835 CPF11_08835 PF01740 STAS domain CPF11_08840 PF01925 CPF11_08840 CPF11_08845 PF00753 Metallo-beta-lactamase superfamily CPF11_08850 PF00578 AhpC/TSA family CPF11_08850 PF10417 C-terminal domain of 1-Cys peroxiredoxin CPF11_08855 PF01022 Bacterial regulatory protein, arsR family CPF11_08860 PF03352 Methyladenine glycosylase CPF11_08870 PF03960 ArsC family CPF11_08875 PF00210 Ferritin-like domain CPF11_08880 PF13387 CPF11_08880 CPF11_08890 PF00300 Histidine phosphatase superfamily (branch 1) CPF11_08895 PF00205 Thiamine pyrophosphate enzyme, central domain CPF11_08895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_08895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPF11_08900 PF03824 CPF11_08900 CPF11_08905 PF01774 UreD urease accessory protein CPF11_08910 PF00547 Urease, gamma subunit CPF11_08915 PF00699 Urease beta subunit CPF11_08920 PF00449 Urease alpha-subunit, N-terminal domain CPF11_08920 PF01979 Amidohydrolase family CPF11_08925 PF02814 UreE urease accessory protein, N-terminal domain CPF11_08925 PF05194 UreE urease accessory protein, C-terminal domain CPF11_08930 PF01730 UreF CPF11_08935 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPF11_08950 PF00072 Response regulator receiver domain CPF11_08950 PF00196 Bacterial regulatory proteins, luxR family CPF11_08955 PF00072 Response regulator receiver domain CPF11_08955 PF00512 His Kinase A (phospho-acceptor) domain CPF11_08955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_08960 PF13433 Periplasmic binding protein domain CPF11_08965 PF02653 CPF11_08965 CPF11_08970 PF02653 CPF11_08970 CPF11_08975 PF00005 ABC transporter CPF11_08975 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPF11_08980 PF00005 ABC transporter CPF11_08985 PF14281 CPF11_08985 CPF11_08995 PF07690 Major Facilitator Superfamily CPF11_09000 PF00491 Arginase family CPF11_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_09005 PF03466 LysR substrate binding domain CPF11_09025 PF07370 CPF11_09025 CPF11_09030 PF04055 Radical SAM superfamily CPF11_09030 PF06969 HemN C-terminal domain CPF11_09035 PF02705 CPF11_09035 CPF11_09040 PF01168 Alanine racemase, N-terminal domain CPF11_09045 PF00107 Zinc-binding dehydrogenase CPF11_09045 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_09050 PF00571 CBS domain CPF11_09050 PF00654 Voltage gated chloride channel CPF11_09055 PF01497 Periplasmic binding protein CPF11_09070 PF13671 AAA domain CPF11_09075 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CPF11_09080 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CPF11_09085 PF08282 haloacid dehalogenase-like hydrolase CPF11_09090 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CPF11_09090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPF11_09095 PF00342 Phosphoglucose isomerase CPF11_09095 PF00923 Transaldolase CPF11_09100 PF00456 Transketolase, thiamine diphosphate binding domain CPF11_09100 PF02779 Transketolase, pyrimidine binding domain CPF11_09100 PF02780 Transketolase, C-terminal domain CPF11_09105 PF13857 Ankyrin repeats (many copies) CPF11_09110 PF00155 Aminotransferase class I and II CPF11_09120 PF01544 CorA-like Mg2+ transporter protein CPF11_09125 PF02694 CPF11_09125 CPF11_09130 PF00005 ABC transporter CPF11_09135 PF01061 CPF11_09135 CPF11_09140 PF01464 Transglycosylase SLT domain CPF11_09140 PF05036 Sporulation related domain CPF11_09150 PF02578 Multi-copper polyphenol oxidoreductase laccase CPF11_09155 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase CPF11_09160 PF01790 CPF11_09160 CPF11_09165 PF01370 NAD dependent epimerase/dehydratase family CPF11_09170 PF03992 Antibiotic biosynthesis monooxygenase CPF11_09175 PF02652 CPF11_09175 CPF11_09180 PF01464 Transglycosylase SLT domain CPF11_09185 PF00083 Sugar (and other) transporter CPF11_09190 PF00589 Phage integrase family CPF11_09190 PF13356 Domain of unknown function (DUF4102) CPF11_09200 PF01609 Transposase DDE domain CPF11_09200 PF05598 CPF11_09200 CPF11_09210 PF13560 Helix-turn-helix domain CPF11_09235 PF02498 CPF11_09235 CPF11_09235 PF03374 CPF11_09235 CPF11_09245 PF13362 Toprim domain CPF11_09250 PF06048 CPF11_09250 CPF11_09255 PF00239 Resolvase, N terminal domain CPF11_09255 PF02796 Helix-turn-helix domain of resolvase CPF11_09270 PF00117 Glutamine amidotransferase class-I CPF11_09270 PF00958 GMP synthase C terminal domain CPF11_09270 PF02540 NAD synthase CPF11_09275 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_09280 PF10030 CPF11_09280 CPF11_09285 PF04073 Aminoacyl-tRNA editing domain CPF11_09290 PF01008 Initiation factor 2 subunit family CPF11_09305 PF01475 Ferric uptake regulator family CPF11_09310 PF01297 Periplasmic solute binding protein family CPF11_09315 PF00005 ABC transporter CPF11_09320 PF00950 CPF11_09320 CPF11_09325 PF01613 Flavin reductase like domain CPF11_09330 PF16113 CPF11_09330 CPF11_09335 PF01184 CPF11_09335 CPF11_09340 PF04632 CPF11_09340 CPF11_09345 PF01047 MarR family CPF11_09350 PF07845 CPF11_09350 CPF11_09355 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPF11_09355 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPF11_09360 PF02514 CPF11_09360 CPF11_09365 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_09365 PF07685 CobB/CobQ-like glutamine amidotransferase domain CPF11_09370 PF00300 Histidine phosphatase superfamily (branch 1) CPF11_09375 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CPF11_09375 PF12557 Cob(I)alamin adenosyltransferase N terminal CPF11_09380 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_09380 PF07685 CobB/CobQ-like glutamine amidotransferase domain CPF11_09385 PF00881 Nitroreductase family CPF11_09390 PF03186 CPF11_09390 CPF11_09395 PF00155 Aminotransferase class I and II CPF11_09400 PF02654 CPF11_09400 CPF11_09405 PF02277 Phosphoribosyltransferase CPF11_09410 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CPF11_09415 PF07690 Major Facilitator Superfamily CPF11_09420 PF00171 Aldehyde dehydrogenase family CPF11_09425 PF00034 Cytochrome c CPF11_09430 PF05199 GMC oxidoreductase CPF11_09430 PF05834 CPF11_09430 CPF11_09435 PF12318 CPF11_09435 CPF11_09440 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) CPF11_09445 PF04966 Carbohydrate-selective porin, OprB family CPF11_09450 PF00375 Sodium:dicarboxylate symporter family CPF11_09455 PF00355 Rieske [2Fe-2S] domain CPF11_09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_09460 PF03466 LysR substrate binding domain CPF11_09465 PF03544 Gram-negative bacterial TonB protein C-terminal CPF11_09470 PF02472 Biopolymer transport protein ExbD/TolR CPF11_09475 PF01618 CPF11_09475 CPF11_09480 PF06772 CPF11_09480 CPF11_09485 PF00239 Resolvase, N terminal domain CPF11_09485 PF13384 Homeodomain-like domain CPF11_09490 PF13403 Hint domain CPF11_09510 PF08378 CPF11_09510 CPF11_09535 PF00589 Phage integrase family CPF11_09540 PF04014 Antidote-toxin recognition MazE CPF11_09545 PF02452 PemK-like protein CPF11_09560 PF01609 Transposase DDE domain CPF11_09560 PF05598 CPF11_09560 CPF11_09565 PF01609 Transposase DDE domain CPF11_09565 PF05598 CPF11_09565 CPF11_09580 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CPF11_09580 PF04851 Type III restriction enzyme, res subunit CPF11_09580 PF11867 CPF11_09580 CPF11_09585 PF01420 Type I restriction modification DNA specificity domain CPF11_09590 PF01909 Nucleotidyltransferase domain CPF11_09595 PF08780 Nucleotidyltransferase substrate binding protein like CPF11_09600 PF02384 N-6 DNA Methylase CPF11_09600 PF12161 HsdM N-terminal domain CPF11_09605 PF03432 CPF11_09605 CPF11_09610 PF01402 Ribbon-helix-helix protein, copG family CPF11_09620 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_09630 PF00583 Acetyltransferase (GNAT) family CPF11_09635 PF13304 AAA domain CPF11_09660 PF03692 CPF11_09660 CPF11_09670 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPF11_09675 PF00476 DNA polymerase family A CPF11_09680 PF12728 Helix-turn-helix domain CPF11_09685 PF00589 Phage integrase family CPF11_09695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_09695 PF10414 Sirohaem synthase dimerisation region CPF11_09695 PF13241 Putative NAD(P)-binding CPF11_09695 PF14824 Sirohaem biosynthesis protein central CPF11_09700 PF01565 FAD binding domain CPF11_09700 PF02913 FAD linked oxidases, C-terminal domain CPF11_09705 PF03180 NLPA lipoprotein CPF11_09710 PF00005 ABC transporter CPF11_09715 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_09720 PF00042 Globin CPF11_09720 PF00175 Oxidoreductase NAD-binding domain CPF11_09720 PF00970 Oxidoreductase FAD-binding domain CPF11_09725 PF13560 Helix-turn-helix domain CPF11_09730 PF00144 Beta-lactamase CPF11_09735 PF13532 2OG-Fe(II) oxygenase superfamily CPF11_09745 PF00474 Sodium:solute symporter family CPF11_09750 PF11755 CPF11_09750 CPF11_09760 PF03702 Uncharacterised protein family (UPF0075) CPF11_09770 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CPF11_09775 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CPF11_09785 PF02556 Preprotein translocase subunit SecB CPF11_09790 PF06305 CPF11_09790 CPF11_09795 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CPF11_09800 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CPF11_09825 PF00324 Amino acid permease CPF11_09830 PF04454 Encapsulating protein for peroxidase CPF11_09835 PF04261 Dyp-type peroxidase family CPF11_09840 PF01654 CPF11_09840 CPF11_09845 PF02322 CPF11_09845 CPF11_09860 PF00083 Sugar (and other) transporter CPF11_09865 PF01553 Acyltransferase CPF11_09870 PF02630 SCO1/SenC CPF11_09875 PF00476 DNA polymerase family A CPF11_09875 PF01367 5'-3' exonuclease, C-terminal SAM fold CPF11_09875 PF01612 3'-5' exonuclease CPF11_09875 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPF11_09880 PF01063 Aminotransferase class IV CPF11_09885 PF02696 CPF11_09885 CPF11_09890 PF00005 ABC transporter CPF11_09895 PF01032 FecCD transport family CPF11_09900 PF00849 RNA pseudouridylate synthase CPF11_09900 PF01479 S4 domain CPF11_09905 PF00140 Sigma-70 factor, region 1 CPF11_09905 PF04542 Sigma-70 region 2 CPF11_09905 PF04545 Sigma-70, region 4 CPF11_09910 PF01368 DHH family CPF11_09910 PF02272 DHHA1 domain CPF11_09915 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CPF11_09920 PF00742 Homoserine dehydrogenase CPF11_09920 PF01842 ACT domain CPF11_09920 PF03447 Homoserine dehydrogenase, NAD binding domain CPF11_09925 PF00155 Aminotransferase class I and II CPF11_09935 PF00574 Clp protease CPF11_09945 PF04055 Radical SAM superfamily CPF11_09945 PF13186 Iron-sulfur cluster-binding domain CPF11_09945 PF13353 4Fe-4S single cluster domain CPF11_09950 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CPF11_09955 PF03070 TENA/THI-4/PQQC family CPF11_09960 PF12706 Beta-lactamase superfamily domain CPF11_09965 PF08042 CPF11_09965 CPF11_09970 PF13440 CPF11_09970 CPF11_09970 PF14667 Polysaccharide biosynthesis C-terminal domain CPF11_09975 PF06258 CPF11_09975 CPF11_09980 PF13641 Glycosyltransferase like family 2 CPF11_09985 PF03372 Endonuclease/Exonuclease/phosphatase family CPF11_09990 PF01521 Iron-sulphur cluster biosynthesis CPF11_09995 PF01966 HD domain CPF11_09995 PF13286 Phosphohydrolase-associated domain CPF11_10000 PF00133 tRNA synthetases class I (I, L, M and V) CPF11_10000 PF00750 tRNA synthetases class I (R) CPF11_10000 PF03485 Arginyl tRNA synthetase N terminal domain CPF11_10000 PF05746 DALR anticodon binding domain CPF11_10005 PF05036 Sporulation related domain CPF11_10010 PF02616 ScpA/B protein CPF11_10015 PF04079 Putative transcriptional regulators (Ypuh-like) CPF11_10025 PF00902 Sec-independent protein translocase protein (TatC) CPF11_10030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPF11_10030 PF02403 Seryl-tRNA synthetase N-terminal domain CPF11_10035 PF00893 Small Multidrug Resistance protein CPF11_10040 PF11412 Disulphide bond corrector protein DsbC CPF11_10040 PF13899 Thioredoxin-like CPF11_10045 PF10276 Zinc-finger domain CPF11_10050 PF12146 Putative lysophospholipase CPF11_10065 PF04632 CPF11_10065 CPF11_10070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_10070 PF03466 LysR substrate binding domain CPF11_10075 PF00293 NUDIX domain CPF11_10115 PF00593 TonB dependent receptor CPF11_10115 PF07715 TonB-dependent Receptor Plug Domain CPF11_10130 PF01425 Amidase CPF11_10140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_10140 PF03466 LysR substrate binding domain CPF11_10145 PF02678 Pirin CPF11_10145 PF05726 Pirin C-terminal cupin domain CPF11_10150 PF03358 NADPH-dependent FMN reductase CPF11_10155 PF03928 Domain of unknown function (DUF336) CPF11_10160 PF07690 Major Facilitator Superfamily CPF11_10165 PF00171 Aldehyde dehydrogenase family CPF11_10175 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_10180 PF00440 Bacterial regulatory proteins, tetR family CPF11_10180 PF16925 CPF11_10180 CPF11_10190 PF02445 Quinolinate synthetase A protein CPF11_10195 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CPF11_10195 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CPF11_10200 PF04168 CPF11_10200 CPF11_10205 PF14403 CPF11_10205 CPF11_10210 PF01841 Transglutaminase-like superfamily CPF11_10210 PF08379 CPF11_10210 CPF11_10215 PF10005 CPF11_10215 CPF11_10215 PF15887 CPF11_10215 CPF11_10220 PF01565 FAD binding domain CPF11_10220 PF09330 D-lactate dehydrogenase, membrane binding CPF11_10225 PF00171 Aldehyde dehydrogenase family CPF11_10230 PF13561 Enoyl-(Acyl carrier protein) reductase CPF11_10240 PF00034 Cytochrome c CPF11_10250 PF03884 Domain of unknown function (DUF329) CPF11_10255 PF10150 Ribonuclease E/G family CPF11_10260 PF02545 Maf-like protein CPF11_10265 PF01176 Translation initiation factor 1A / IF-1 CPF11_10270 PF00815 Histidinol dehydrogenase CPF11_10275 PF01634 ATP phosphoribosyltransferase CPF11_10280 PF10150 Ribonuclease E/G family CPF11_10285 PF01520 N-acetylmuramoyl-L-alanine amidase CPF11_10290 PF00892 EamA-like transporter family CPF11_10300 PF01370 NAD dependent epimerase/dehydratase family CPF11_10305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_10305 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPF11_10310 PF00310 Glutamine amidotransferases class-II CPF11_10310 PF01493 GXGXG motif CPF11_10310 PF01645 Conserved region in glutamate synthase CPF11_10310 PF04898 Glutamate synthase central domain CPF11_10315 PF01432 Peptidase family M3 CPF11_10315 PF08439 Oligopeptidase F CPF11_10320 PF03109 CPF11_10320 CPF11_10330 PF02401 LytB protein CPF11_10335 PF01636 Phosphotransferase enzyme family CPF11_10340 PF00075 RNase H CPF11_10355 PF01513 ATP-NAD kinase CPF11_10360 PF00534 Glycosyl transferases group 1 CPF11_10360 PF13439 Glycosyltransferase Family 4 CPF11_10370 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPF11_10375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPF11_10375 PF02824 TGS domain CPF11_10375 PF03129 Anticodon binding domain CPF11_10375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPF11_10380 PF00707 Translation initiation factor IF-3, C-terminal domain CPF11_10380 PF05198 Translation initiation factor IF-3, N-terminal domain CPF11_10385 PF04402 Protein of unknown function (DUF541) CPF11_10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_10395 PF00072 Response regulator receiver domain CPF11_10395 PF00486 Transcriptional regulatory protein, C terminal CPF11_10400 PF01594 CPF11_10400 CPF11_10405 PF00005 ABC transporter CPF11_10405 PF12848 ABC transporter CPF11_10405 PF16326 CPF11_10405 CPF11_10410 PF00334 Nucleoside diphosphate kinase CPF11_10415 PF02310 B12 binding domain CPF11_10415 PF04055 Radical SAM superfamily CPF11_10425 PF00403 Heavy-metal-associated domain CPF11_10435 PF14279 CPF11_10435 CPF11_10440 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPF11_10445 PF00155 Aminotransferase class I and II CPF11_10450 PF00155 Aminotransferase class I and II CPF11_10455 PF09084 NMT1/THI5 like CPF11_10465 PF01042 Endoribonuclease L-PSP CPF11_10470 PF02569 Pantoate-beta-alanine ligase CPF11_10475 PF01336 OB-fold nucleic acid binding domain CPF11_10475 PF02811 PHP domain CPF11_10475 PF07733 Bacterial DNA polymerase III alpha subunit CPF11_10475 PF14579 Helix-hairpin-helix motif CPF11_10480 PF00425 chorismate binding enzyme CPF11_10480 PF04715 Anthranilate synthase component I, N terminal region CPF11_10485 PF01063 Aminotransferase class IV CPF11_10500 PF00355 Rieske [2Fe-2S] domain CPF11_10505 PF00318 Ribosomal protein S2 CPF11_10510 PF00889 Elongation factor TS CPF11_10515 PF02565 Recombination protein O C terminal CPF11_10515 PF11967 Recombination protein O N terminal CPF11_10520 PF00521 DNA gyrase/topoisomerase IV, subunit A CPF11_10520 PF03989 DNA gyrase C-terminal domain, beta-propeller CPF11_10525 PF04376 CPF11_10525 CPF11_10525 PF04377 CPF11_10525 CPF11_10530 PF00490 Delta-aminolevulinic acid dehydratase CPF11_10535 PF13520 Amino acid permease CPF11_10540 PF00464 Serine hydroxymethyltransferase CPF11_10550 PF00534 Glycosyl transferases group 1 CPF11_10555 PF13579 Glycosyl transferase 4-like domain CPF11_10555 PF13692 Glycosyl transferases group 1 CPF11_10560 PF00270 DEAD/DEAH box helicase CPF11_10560 PF00271 Helicase conserved C-terminal domain CPF11_10565 PF06258 CPF11_10565 CPF11_10575 PF12710 haloacid dehalogenase-like hydrolase CPF11_10580 PF01715 IPP transferase CPF11_10585 PF00205 Thiamine pyrophosphate enzyme, central domain CPF11_10585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_10585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPF11_10590 PF10369 Small subunit of acetolactate synthase CPF11_10590 PF13710 ACT domain CPF11_10595 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CPF11_10595 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CPF11_10600 PF05275 CPF11_10600 CPF11_10605 PF00394 Multicopper oxidase CPF11_10605 PF07731 Multicopper oxidase CPF11_10605 PF07732 Multicopper oxidase CPF11_10615 PF00122 E1-E2 ATPase CPF11_10615 PF00403 Heavy-metal-associated domain CPF11_10615 PF00702 haloacid dehalogenase-like hydrolase CPF11_10625 PF00857 Isochorismatase family CPF11_10630 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPF11_10645 PF01474 Class-II DAHP synthetase family CPF11_10655 PF01205 Uncharacterized protein family UPF0029 CPF11_10655 PF09186 Domain of unknown function (DUF1949) CPF11_10665 PF03618 CPF11_10665 CPF11_10670 PF00391 PEP-utilising enzyme, mobile domain CPF11_10670 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CPF11_10670 PF02896 PEP-utilising enzyme, TIM barrel domain CPF11_10675 PF00533 BRCA1 C Terminus (BRCT) domain CPF11_10675 PF01653 NAD-dependent DNA ligase adenylation domain CPF11_10675 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CPF11_10675 PF03120 NAD-dependent DNA ligase OB-fold domain CPF11_10675 PF12826 Helix-hairpin-helix motif CPF11_10680 PF02463 RecF/RecN/SMC N terminal domain CPF11_10685 PF13525 Outer membrane lipoprotein CPF11_10690 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CPF11_10695 PF00091 Tubulin/FtsZ family, GTPase domain CPF11_10695 PF12327 FtsZ family, C-terminal domain CPF11_10700 PF02491 SHS2 domain inserted in FTSA CPF11_10700 PF14450 Cell division protein FtsA CPF11_10705 PF03799 Cell division protein FtsQ CPF11_10705 PF08478 POTRA domain, FtsQ-type CPF11_10710 PF01820 D-ala D-ala ligase N-terminus CPF11_10710 PF07478 D-ala D-ala ligase C-terminus CPF11_10715 PF01565 FAD binding domain CPF11_10715 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CPF11_10720 PF01225 Mur ligase family, catalytic domain CPF11_10720 PF02875 Mur ligase family, glutamate ligase domain CPF11_10720 PF08245 Mur ligase middle domain CPF11_10725 PF03033 Glycosyltransferase family 28 N-terminal domain CPF11_10725 PF04101 Glycosyltransferase family 28 C-terminal domain CPF11_10730 PF01098 CPF11_10730 CPF11_10735 PF08245 Mur ligase middle domain CPF11_10740 PF00953 Glycosyl transferase family 4 CPF11_10745 PF01225 Mur ligase family, catalytic domain CPF11_10745 PF02875 Mur ligase family, glutamate ligase domain CPF11_10745 PF08245 Mur ligase middle domain CPF11_10750 PF01225 Mur ligase family, catalytic domain CPF11_10750 PF02875 Mur ligase family, glutamate ligase domain CPF11_10750 PF08245 Mur ligase middle domain CPF11_10755 PF00905 Penicillin binding protein transpeptidase domain CPF11_10755 PF03717 Penicillin-binding Protein dimerisation domain CPF11_10765 PF01795 MraW methylase family CPF11_10770 PF02381 MraZ protein CPF11_10780 PF07859 alpha/beta hydrolase fold CPF11_10790 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CPF11_10790 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CPF11_10795 PF10073 CPF11_10795 CPF11_10805 PF00696 Amino acid kinase family CPF11_10805 PF01472 PUA domain CPF11_10810 PF01018 GTP1/OBG CPF11_10810 PF01926 50S ribosome-binding GTPase CPF11_10815 PF01016 Ribosomal L27 protein CPF11_10820 PF00829 Ribosomal prokaryotic L21 protein CPF11_10835 PF13403 Hint domain CPF11_10840 PF04355 SmpA / OmlA family CPF11_10850 PF13936 Helix-turn-helix domain CPF11_10865 PF03929 CPF11_10865 CPF11_10870 PF00593 TonB dependent receptor CPF11_10870 PF07715 TonB-dependent Receptor Plug Domain CPF11_10905 PF07262 Protein of unknown function (DUF1436) CPF11_10910 PF07262 Protein of unknown function (DUF1436) CPF11_10915 PF07262 Protein of unknown function (DUF1436) CPF11_10920 PF13946 CPF11_10920 CPF11_10925 PF01757 CPF11_10925 CPF11_10930 PF03050 CPF11_10930 CPF11_10930 PF13005 CPF11_10930 CPF11_10930 PF13007 CPF11_10930 CPF11_10930 PF13817 CPF11_10930 CPF11_10935 PF05717 CPF11_10935 CPF11_10940 PF01527 Transposase CPF11_10950 PF01042 Endoribonuclease L-PSP CPF11_10965 PF01850 PIN domain CPF11_10975 PF11663 CPF11_10975 CPF11_10980 PF15937 CPF11_10980 CPF11_10985 PF04221 RelB antitoxin CPF11_11005 PF01548 CPF11_11005 CPF11_11005 PF02371 CPF11_11005 CPF11_11010 PF01527 Transposase CPF11_11025 PF09565 CPF11_11025 CPF11_11030 PF00239 Resolvase, N terminal domain CPF11_11030 PF13384 Homeodomain-like domain CPF11_11035 PF13403 Hint domain CPF11_11050 PF13403 Hint domain CPF11_11065 PF13403 Hint domain CPF11_11070 PF07859 alpha/beta hydrolase fold CPF11_11085 PF00860 Permease family CPF11_11090 PF07642 CPF11_11090 CPF11_11100 PF03358 NADPH-dependent FMN reductase CPF11_11105 PF00355 Rieske [2Fe-2S] domain CPF11_11105 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CPF11_11110 PF02167 Cytochrome C1 family CPF11_11115 PF00032 Cytochrome b(C-terminal)/b6/petD CPF11_11115 PF00033 Cytochrome b(N-terminal)/b6/petB CPF11_11120 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPF11_11120 PF01872 RibD C-terminal domain CPF11_11125 PF00677 Lumazine binding domain CPF11_11130 PF00925 GTP cyclohydrolase II CPF11_11130 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CPF11_11135 PF00885 6,7-dimethyl-8-ribityllumazine synthase CPF11_11140 PF03706 CPF11_11140 CPF11_11145 PF03176 MMPL family CPF11_11150 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_11155 PF11730 CPF11_11155 CPF11_11165 PF13437 HlyD family secretion protein CPF11_11165 PF13533 Biotin-lipoyl like CPF11_11170 PF07869 CPF11_11170 CPF11_11175 PF04632 CPF11_11175 CPF11_11180 PF00149 Calcineurin-like phosphoesterase CPF11_11190 PF04966 Carbohydrate-selective porin, OprB family CPF11_11195 PF00994 Probable molybdopterin binding domain CPF11_11200 PF01965 DJ-1/PfpI family CPF11_11205 PF01227 GTP cyclohydrolase I CPF11_11210 PF04379 Protein of unknown function (DUF525) CPF11_11215 PF01053 Cys/Met metabolism PLP-dependent enzyme CPF11_11220 PF00483 Nucleotidyl transferase CPF11_11220 PF01050 Mannose-6-phosphate isomerase CPF11_11225 PF13302 Acetyltransferase (GNAT) domain CPF11_11225 PF14815 NUDIX domain CPF11_11230 PF00355 Rieske [2Fe-2S] domain CPF11_11240 PF02699 Preprotein translocase subunit CPF11_11245 PF00270 DEAD/DEAH box helicase CPF11_11250 PF00589 Phage integrase family CPF11_11250 PF02899 Phage integrase, N-terminal SAM-like domain CPF11_11255 PF00561 alpha/beta hydrolase fold CPF11_11260 PF13650 Aspartyl protease CPF11_11270 PF00909 Ammonium Transporter Family CPF11_11300 PF13472 GDSL-like Lipase/Acylhydrolase family CPF11_11330 PF00118 TCP-1/cpn60 chaperonin family CPF11_11335 PF00166 Chaperonin 10 Kd subunit CPF11_11340 PF01738 Dienelactone hydrolase family CPF11_11345 PF00313 'Cold-shock' DNA-binding domain CPF11_11350 PF13307 Helicase C-terminal domain CPF11_11355 PF00459 Inositol monophosphatase family CPF11_11360 PF01132 Elongation factor P (EF-P) OB domain CPF11_11360 PF08207 Elongation factor P (EF-P) KOW-like domain CPF11_11360 PF09285 Elongation factor P, C-terminal CPF11_11370 PF01370 NAD dependent epimerase/dehydratase family CPF11_11375 PF09335 CPF11_11375 CPF11_11380 PF01494 FAD binding domain CPF11_11385 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_11385 PF06426 Serine acetyltransferase, N-terminal CPF11_11390 PF00543 Nitrogen regulatory protein P-II CPF11_11395 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CPF11_11395 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CPF11_11395 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CPF11_11410 PF14681 Uracil phosphoribosyltransferase CPF11_11415 PF00534 Glycosyl transferases group 1 CPF11_11420 PF00156 Phosphoribosyl transferase domain CPF11_11430 PF04800 ETC complex I subunit conserved region CPF11_11460 PF05272 CPF11_11460 CPF11_11460 PF16793 CPF11_11460 CPF11_11465 PF05930 Prophage CP4-57 regulatory protein (AlpA) CPF11_11475 PF12802 MarR family CPF11_11485 PF00589 Phage integrase family CPF11_11485 PF13356 Domain of unknown function (DUF4102) CPF11_11490 PF13641 Glycosyltransferase like family 2 CPF11_11495 PF14393 CPF11_11495 CPF11_11500 PF03275 UDP-galactopyranose mutase CPF11_11500 PF13450 NAD(P)-binding Rossmann-like domain CPF11_11510 PF01609 Transposase DDE domain CPF11_11510 PF05598 CPF11_11510 CPF11_11515 PF00535 Glycosyl transferase family 2 CPF11_11520 PF00535 Glycosyl transferase family 2 CPF11_11525 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CPF11_11525 PF02542 YgbB family CPF11_11530 PF01207 Dihydrouridine synthase (Dus) CPF11_11535 PF00512 His Kinase A (phospho-acceptor) domain CPF11_11535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_11540 PF00072 Response regulator receiver domain CPF11_11540 PF00158 Sigma-54 interaction domain CPF11_11540 PF02954 Bacterial regulatory protein, Fis family CPF11_11545 PF00512 His Kinase A (phospho-acceptor) domain CPF11_11545 PF00672 HAMP domain CPF11_11545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_11550 PF00072 Response regulator receiver domain CPF11_11550 PF00158 Sigma-54 interaction domain CPF11_11550 PF02954 Bacterial regulatory protein, Fis family CPF11_11555 PF17209 CPF11_11555 CPF11_11560 PF01926 50S ribosome-binding GTPase CPF11_11560 PF13167 CPF11_11560 CPF11_11560 PF16360 CPF11_11560 CPF11_11565 PF00293 NUDIX domain CPF11_11565 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal CPF11_11570 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_11570 PF02861 Clp amino terminal domain CPF11_11570 PF07724 AAA domain (Cdc48 subfamily) CPF11_11570 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_11575 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CPF11_11575 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CPF11_11580 PF00494 Squalene/phytoene synthase CPF11_11585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPF11_11585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CPF11_11595 PF01794 CPF11_11595 CPF11_11600 PF00916 CPF11_11600 CPF11_11600 PF01740 STAS domain CPF11_11605 PF02684 CPF11_11605 CPF11_11610 PF01502 Phosphoribosyl-AMP cyclohydrolase CPF11_11615 PF01571 Aminomethyltransferase folate-binding domain CPF11_11615 PF08669 Glycine cleavage T-protein C-terminal barrel domain CPF11_11620 PF00733 Asparagine synthase CPF11_11620 PF13537 Glutamine amidotransferase domain CPF11_11625 PF00534 Glycosyl transferases group 1 CPF11_11630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPF11_11640 PF09976 Tetratricopeptide repeat CPF11_11645 PF13360 PQQ-like domain CPF11_11650 PF01926 50S ribosome-binding GTPase CPF11_11650 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CPF11_11655 PF07690 Major Facilitator Superfamily CPF11_11660 PF04107 Glutamate-cysteine ligase family 2(GCS2) CPF11_11665 PF04452 RNA methyltransferase CPF11_11670 PF01040 UbiA prenyltransferase family CPF11_11675 PF03548 Outer membrane lipoprotein carrier protein LolA CPF11_11680 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_11680 PF12002 MgsA AAA+ ATPase C terminal CPF11_11680 PF16193 CPF11_11680 CPF11_11685 PF00849 RNA pseudouridylate synthase CPF11_11690 PF05170 CPF11_11690 CPF11_11690 PF13502 CPF11_11690 CPF11_11695 PF07542 ATP12 chaperone protein CPF11_11700 PF13801 Heavy-metal resistance CPF11_11705 PF00448 SRP54-type protein, GTPase domain CPF11_11705 PF02881 SRP54-type protein, helical bundle domain CPF11_11705 PF02978 Signal peptide binding domain CPF11_11710 PF00886 Ribosomal protein S16 CPF11_11715 PF01782 RimM N-terminal domain CPF11_11720 PF01746 tRNA (Guanine-1)-methyltransferase CPF11_11725 PF01245 Ribosomal protein L19 CPF11_11730 PF00330 Aconitase family (aconitate hydratase) CPF11_11735 PF00694 Aconitase C-terminal domain CPF11_11740 PF00180 Isocitrate/isopropylmalate dehydrogenase CPF11_11745 PF01165 Ribosomal protein S21 CPF11_11750 PF01327 Polypeptide deformylase CPF11_11755 PF08511 COQ9 CPF11_11760 PF12802 MarR family CPF11_11765 PF00072 Response regulator receiver domain CPF11_11765 PF00486 Transcriptional regulatory protein, C terminal CPF11_11770 PF00512 His Kinase A (phospho-acceptor) domain CPF11_11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_11775 PF04355 SmpA / OmlA family CPF11_11780 PF02620 CPF11_11780 CPF11_11785 PF01783 Ribosomal L32p protein family CPF11_11790 PF02504 Fatty acid synthesis protein CPF11_11795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CPF11_11795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CPF11_11800 PF00216 Bacterial DNA-binding protein CPF11_11805 PF13411 MerR HTH family regulatory protein CPF11_11815 PF01594 CPF11_11815 CPF11_11820 PF03023 CPF11_11820 CPF11_11825 PF03167 Uracil DNA glycosylase superfamily CPF11_11830 PF00216 Bacterial DNA-binding protein CPF11_11835 PF05443 ROS/MUCR transcriptional regulator protein CPF11_11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_11840 PF03466 LysR substrate binding domain CPF11_11845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_11850 PF01037 AsnC family CPF11_11850 PF13404 AsnC-type helix-turn-helix domain CPF11_11855 PF00535 Glycosyl transferase family 2 CPF11_11855 PF04138 CPF11_11855 CPF11_11860 PF13231 CPF11_11860 CPF11_11865 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CPF11_11865 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CPF11_11875 PF08241 Methyltransferase domain CPF11_11880 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPF11_11885 PF01040 UbiA prenyltransferase family CPF11_11895 PF04280 Tim44-like domain CPF11_11900 PF01523 Putative modulator of DNA gyrase CPF11_11905 PF00675 Insulinase (Peptidase family M16) CPF11_11905 PF05193 Peptidase M16 inactive domain CPF11_11910 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_11910 PF14821 Threonine synthase N terminus CPF11_11915 PF03022 Major royal jelly protein CPF11_11920 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CPF11_11925 PF13432 Tetratricopeptide repeat CPF11_11930 PF00488 MutS domain V CPF11_11930 PF01624 MutS domain I CPF11_11930 PF05188 MutS domain II CPF11_11930 PF05190 MutS family domain IV CPF11_11930 PF05192 MutS domain III CPF11_11935 PF01842 ACT domain CPF11_11935 PF01909 Nucleotidyltransferase domain CPF11_11935 PF01966 HD domain CPF11_11935 PF08335 GlnD PII-uridylyltransferase CPF11_11940 PF00293 NUDIX domain CPF11_11945 PF00005 ABC transporter CPF11_11945 PF00664 ABC transporter transmembrane region CPF11_11955 PF00830 Ribosomal L28 family CPF11_11960 PF00009 Elongation factor Tu GTP binding domain CPF11_11960 PF00679 Elongation factor G C-terminus CPF11_11960 PF03144 Elongation factor Tu domain 2 CPF11_11960 PF03764 Elongation factor G, domain IV CPF11_11960 PF14492 Elongation Factor G, domain II CPF11_11965 PF12697 Alpha/beta hydrolase family CPF11_11970 PF00311 Phosphoenolpyruvate carboxylase CPF11_11975 PF04286 CPF11_11975 CPF11_11980 PF02082 Transcriptional regulator CPF11_11985 PF01458 Uncharacterized protein family (UPF0051) CPF11_11990 PF00005 ABC transporter CPF11_11995 PF01458 Uncharacterized protein family (UPF0051) CPF11_12000 PF00266 Aminotransferase class-V CPF11_12005 PF01592 NifU-like N terminal domain CPF11_12010 PF01883 Domain of unknown function DUF59 CPF11_12015 PF01521 Iron-sulphur cluster biosynthesis CPF11_12020 PF05958 tRNA (Uracil-5-)-methyltransferase CPF11_12025 PF00270 DEAD/DEAH box helicase CPF11_12025 PF00271 Helicase conserved C-terminal domain CPF11_12035 PF01256 Carbohydrate kinase CPF11_12035 PF03853 YjeF-related protein N-terminus CPF11_12045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPF11_12045 PF05697 Bacterial trigger factor protein (TF) CPF11_12045 PF05698 Bacterial trigger factor protein (TF) C-terminus CPF11_12050 PF00574 Clp protease CPF11_12055 PF06689 ClpX C4-type zinc finger CPF11_12055 PF07724 AAA domain (Cdc48 subfamily) CPF11_12055 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_12060 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_12060 PF02190 ATP-dependent protease La (LON) domain CPF11_12060 PF05362 Lon protease (S16) C-terminal proteolytic domain CPF11_12065 PF00216 Bacterial DNA-binding protein CPF11_12075 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CPF11_12080 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CPF11_12085 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CPF11_12090 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CPF11_12095 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin CPF11_12100 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CPF11_12100 PF10531 SLBB domain CPF11_12100 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CPF11_12105 PF00384 Molybdopterin oxidoreductase CPF11_12105 PF09326 CPF11_12105 CPF11_12105 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CPF11_12105 PF13510 2Fe-2S iron-sulfur cluster binding domain CPF11_12110 PF00146 NADH dehydrogenase CPF11_12115 PF12838 4Fe-4S dicluster domain CPF11_12120 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CPF11_12125 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CPF11_12130 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CPF11_12130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CPF11_12135 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CPF11_12140 PF02237 Biotin protein ligase C terminal domain CPF11_12140 PF03099 Biotin/lipoate A/B protein ligase family CPF11_12145 PF03309 Type III pantothenate kinase CPF11_12150 PF07521 RNA-metabolising metallo-beta-lactamase CPF11_12150 PF12706 Beta-lactamase superfamily domain CPF11_12155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPF11_12155 PF03129 Anticodon binding domain CPF11_12160 PF02687 CPF11_12160 CPF11_12160 PF12704 MacB-like periplasmic core domain CPF11_12165 PF00005 ABC transporter CPF11_12170 PF00255 Glutathione peroxidase CPF11_12175 PF01614 Bacterial transcriptional regulator CPF11_12175 PF09339 IclR helix-turn-helix domain CPF11_12180 PF11306 Protein of unknown function (DUF3108) CPF11_12185 PF01380 SIS domain CPF11_12185 PF13522 Glutamine amidotransferase domain CPF11_12190 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_12190 PF12804 MobA-like NTP transferase domain CPF11_12190 PF14602 Hexapeptide repeat of succinyl-transferase CPF11_12195 PF13419 Haloacid dehalogenase-like hydrolase CPF11_12200 PF12804 MobA-like NTP transferase domain CPF11_12205 PF04116 CPF11_12205 CPF11_12210 PF03739 CPF11_12210 CPF11_12215 PF03739 CPF11_12215 CPF11_12220 PF00149 Calcineurin-like phosphoesterase CPF11_12225 PF00781 Diacylglycerol kinase catalytic domain CPF11_12235 PF00155 Aminotransferase class I and II CPF11_12240 PF00550 Phosphopantetheine attachment site CPF11_12245 PF00501 AMP-binding enzyme CPF11_12300 PF00106 short chain dehydrogenase CPF11_12305 PF04237 YjbR CPF11_12310 PF04126 Cyclophilin-like CPF11_12315 PF07690 Major Facilitator Superfamily CPF11_12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_12320 PF03466 LysR substrate binding domain CPF11_12325 PF13411 MerR HTH family regulatory protein CPF11_12330 PF00106 short chain dehydrogenase CPF11_12335 PF00873 AcrB/AcrD/AcrF family CPF11_12340 PF16576 CPF11_12340 CPF11_12345 PF02321 Outer membrane efflux protein CPF11_12350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_12355 PF03466 LysR substrate binding domain CPF11_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_12360 PF03466 LysR substrate binding domain CPF11_12365 PF02219 Methylenetetrahydrofolate reductase CPF11_12370 PF02677 CPF11_12370 CPF11_12375 PF01717 Cobalamin-independent synthase, Catalytic domain CPF11_12380 PF08908 CPF11_12380 CPF11_12385 PF00355 Rieske [2Fe-2S] domain CPF11_12410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPF11_12425 PF07690 Major Facilitator Superfamily CPF11_12435 PF07080 Protein of unknown function (DUF1348) CPF11_12440 PF00107 Zinc-binding dehydrogenase CPF11_12440 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_12445 PF00593 TonB dependent receptor CPF11_12445 PF07715 TonB-dependent Receptor Plug Domain CPF11_12455 PF00005 ABC transporter CPF11_12455 PF12848 ABC transporter CPF11_12470 PF06826 CPF11_12470 CPF11_12475 PF00155 Aminotransferase class I and II CPF11_12480 PF00710 Asparaginase CPF11_12490 PF08238 Sel1 repeat CPF11_12495 PF00593 TonB dependent receptor CPF11_12495 PF07715 TonB-dependent Receptor Plug Domain CPF11_12500 PF13640 2OG-Fe(II) oxygenase superfamily CPF11_12505 PF00005 ABC transporter CPF11_12505 PF00664 ABC transporter transmembrane region CPF11_12510 PF00005 ABC transporter CPF11_12515 PF01654 CPF11_12515 CPF11_12520 PF02322 CPF11_12520 CPF11_12530 PF07995 Glucose / Sorbosone dehydrogenase CPF11_12535 PF00924 Mechanosensitive ion channel CPF11_12535 PF05552 Conserved TM helix CPF11_12540 PF00593 TonB dependent receptor CPF11_12540 PF07715 TonB-dependent Receptor Plug Domain CPF11_12545 PF13628 CPF11_12545 CPF11_12550 PF02310 B12 binding domain CPF11_12550 PF04055 Radical SAM superfamily CPF11_12550 PF13282 CPF11_12550 CPF11_12555 PF00593 TonB dependent receptor CPF11_12555 PF07715 TonB-dependent Receptor Plug Domain CPF11_12560 PF03551 Transcriptional regulator PadR-like family CPF11_12565 PF01596 O-methyltransferase CPF11_12570 PF04954 Siderophore-interacting protein CPF11_12570 PF08021 Siderophore-interacting FAD-binding domain CPF11_12580 PF04185 Phosphoesterase family CPF11_12580 PF05506 CPF11_12580 CPF11_12590 PF01569 PAP2 superfamily CPF11_12595 PF03060 Nitronate monooxygenase CPF11_12600 PF00005 ABC transporter CPF11_12600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPF11_12605 PF00005 ABC transporter CPF11_12605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPF11_12610 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_12615 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_12615 PF12911 CPF11_12615 CPF11_12620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPF11_12625 PF00478 IMP dehydrogenase / GMP reductase domain CPF11_12625 PF00571 CBS domain CPF11_12630 PF01189 NOL1/NOP2/sun family CPF11_12635 PF00999 Sodium/hydrogen exchanger family CPF11_12640 PF03734 L,D-transpeptidase catalytic domain CPF11_12645 PF00072 Response regulator receiver domain CPF11_12645 PF00486 Transcriptional regulatory protein, C terminal CPF11_12655 PF06912 CPF11_12655 CPF11_12660 PF00579 tRNA synthetases class I (W and Y) CPF11_12665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_12670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPF11_12675 PF00764 Arginosuccinate synthase CPF11_12680 PF04055 Radical SAM superfamily CPF11_12690 PF01479 S4 domain CPF11_12690 PF01728 FtsJ-like methyltransferase CPF11_12695 PF02779 Transketolase, pyrimidine binding domain CPF11_12695 PF02780 Transketolase, C-terminal domain CPF11_12695 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CPF11_12700 PF00348 Polyprenyl synthetase CPF11_12705 PF02609 Exonuclease VII small subunit CPF11_12710 PF01206 Sulfurtransferase TusA CPF11_12715 PF00480 ROK family CPF11_12720 PF01728 FtsJ-like methyltransferase CPF11_12725 PF02541 Ppx/GppA phosphatase family CPF11_12735 PF00384 Molybdopterin oxidoreductase CPF11_12735 PF01568 Molydopterin dinucleotide binding domain CPF11_12735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CPF11_12740 PF09163 Formate dehydrogenase N, transmembrane CPF11_12740 PF13247 4Fe-4S dicluster domain CPF11_12745 PF01292 Prokaryotic cytochrome b561 CPF11_12750 PF04216 Protein involved in formate dehydrogenase formation CPF11_12755 PF00994 Probable molybdopterin binding domain CPF11_12755 PF03453 MoeA N-terminal region (domain I and II) CPF11_12760 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CPF11_12765 PF12804 MobA-like NTP transferase domain CPF11_12770 PF02634 FdhD/NarQ family CPF11_12775 PF02798 Glutathione S-transferase, N-terminal domain CPF11_12775 PF14497 Glutathione S-transferase, C-terminal domain CPF11_12780 PF02659 CPF11_12780 CPF11_12785 PF00440 Bacterial regulatory proteins, tetR family CPF11_12790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_12790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPF11_12795 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CPF11_12795 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CPF11_12795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_12795 PF10371 Domain of unknown function CPF11_12795 PF12838 4Fe-4S dicluster domain CPF11_12795 PF17147 CPF11_12795 CPF11_12800 PF01180 Dihydroorotate dehydrogenase CPF11_12805 PF01515 Phosphate acetyl/butaryl transferase CPF11_12810 PF00871 Acetokinase family CPF11_12815 PF13502 CPF11_12815 CPF11_12820 PF01594 CPF11_12820 CPF11_12835 PF03929 CPF11_12835 CPF11_12840 PF00999 Sodium/hydrogen exchanger family CPF11_12845 PF07642 CPF11_12845 CPF11_12855 PF01011 PQQ enzyme repeat CPF11_12860 PF13557 CPF11_12860 CPF11_12865 PF02954 Bacterial regulatory protein, Fis family CPF11_12875 PF00206 Lyase CPF11_12875 PF10415 Fumarase C C-terminus CPF11_12880 PF07876 Stress responsive A/B Barrel Domain CPF11_12885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CPF11_12890 PF02570 Precorrin-8X methylmutase CPF11_12895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_12900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_12905 PF02571 CPF11_12905 CPF11_12910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_12910 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CPF11_12915 PF01890 Cobalamin synthesis G C-terminus CPF11_12920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_12925 PF01888 CbiD CPF11_12930 PF07690 Major Facilitator Superfamily CPF11_12935 PF04399 Glutaredoxin 2, C terminal domain CPF11_12935 PF13417 Glutathione S-transferase, N-terminal domain CPF11_12940 PF05724 Thiopurine S-methyltransferase (TPMT) CPF11_12945 PF00375 Sodium:dicarboxylate symporter family CPF11_12950 PF00005 ABC transporter CPF11_12990 PF14518 Iron-containing redox enzyme CPF11_12995 PF00440 Bacterial regulatory proteins, tetR family CPF11_13000 PF02534 Type IV secretory system Conjugative DNA transfer CPF11_13010 PF05443 ROS/MUCR transcriptional regulator protein CPF11_13030 PF01336 OB-fold nucleic acid binding domain CPF11_13030 PF02811 PHP domain CPF11_13030 PF07733 Bacterial DNA polymerase III alpha subunit CPF11_13030 PF14579 Helix-hairpin-helix motif CPF11_13035 PF00043 Glutathione S-transferase, C-terminal domain CPF11_13035 PF02798 Glutathione S-transferase, N-terminal domain CPF11_13040 PF02195 ParB-like nuclease domain CPF11_13045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_13045 PF03466 LysR substrate binding domain CPF11_13050 PF10014 2OG-Fe dioxygenase CPF11_13075 PF08241 Methyltransferase domain CPF11_13085 PF06067 CPF11_13085 CPF11_13100 PF03050 CPF11_13100 CPF11_13100 PF13005 CPF11_13100 CPF11_13100 PF13007 CPF11_13100 CPF11_13100 PF13817 CPF11_13100 CPF11_13105 PF05717 CPF11_13105 CPF11_13110 PF01527 Transposase CPF11_13120 PF08808 CPF11_13120 CPF11_13130 PF00216 Bacterial DNA-binding protein CPF11_13135 PF13871 CPF11_13135 CPF11_13135 PF13872 CPF11_13135 CPF11_13140 PF13362 Toprim domain CPF11_13145 PF10686 CPF11_13145 CPF11_13160 PF05284 CPF11_13160 CPF11_13175 PF10074 CPF11_13175 CPF11_13180 PF10134 CPF11_13180 CPF11_13185 PF01555 DNA methylase CPF11_13195 PF11000 CPF11_13195 CPF11_13200 PF10502 Signal peptidase, peptidase S26 CPF11_13205 PF05284 CPF11_13205 CPF11_13215 PF01464 Transglycosylase SLT domain CPF11_13225 PF11843 CPF11_13225 CPF11_13235 PF13701 CPF11_13235 CPF11_13250 PF07519 Tannase and feruloyl esterase CPF11_13255 PF07519 Tannase and feruloyl esterase CPF11_13280 PF00440 Bacterial regulatory proteins, tetR family CPF11_13280 PF16925 CPF11_13280 CPF11_13285 PF01965 DJ-1/PfpI family CPF11_13290 PF00171 Aldehyde dehydrogenase family CPF11_13295 PF02566 OsmC-like protein CPF11_13300 PF00107 Zinc-binding dehydrogenase CPF11_13300 PF16884 CPF11_13300 CPF11_13305 PF00440 Bacterial regulatory proteins, tetR family CPF11_13310 PF00171 Aldehyde dehydrogenase family CPF11_13320 PF01609 Transposase DDE domain CPF11_13320 PF05598 CPF11_13320 CPF11_13330 PF03466 LysR substrate binding domain CPF11_13335 PF03358 NADPH-dependent FMN reductase CPF11_13340 PF04264 YceI-like domain CPF11_13345 PF01609 Transposase DDE domain CPF11_13345 PF13340 CPF11_13345 CPF11_13350 PF16576 CPF11_13350 CPF11_13355 PF00873 AcrB/AcrD/AcrF family CPF11_13360 PF02321 Outer membrane efflux protein CPF11_13365 PF00440 Bacterial regulatory proteins, tetR family CPF11_13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_13370 PF03466 LysR substrate binding domain CPF11_13375 PF01717 Cobalamin-independent synthase, Catalytic domain CPF11_13380 PF01548 CPF11_13380 CPF11_13380 PF02371 CPF11_13380 CPF11_13390 PF04851 Type III restriction enzyme, res subunit CPF11_13395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_13405 PF04796 CPF11_13405 CPF11_13410 PF00589 Phage integrase family CPF11_13410 PF02899 Phage integrase, N-terminal SAM-like domain CPF11_13420 PF13701 CPF11_13420 CPF11_13430 PF07396 Phosphate-selective porin O and P CPF11_13445 PF00593 TonB dependent receptor CPF11_13445 PF07715 TonB-dependent Receptor Plug Domain CPF11_13460 PF03544 Gram-negative bacterial TonB protein C-terminal CPF11_13480 PF02082 Transcriptional regulator CPF11_13485 PF00042 Globin CPF11_13485 PF00970 Oxidoreductase FAD-binding domain CPF11_13490 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPF11_13495 PF04343 CPF11_13495 CPF11_13500 PF00989 PAS fold CPF11_13505 PF09313 Domain of unknown function (DUF1971) CPF11_13510 PF11160 CPF11_13510 CPF11_13515 PF04343 CPF11_13515 CPF11_13520 PF13545 Crp-like helix-turn-helix domain CPF11_13525 PF03050 CPF11_13525 CPF11_13525 PF13005 CPF11_13525 CPF11_13525 PF13007 CPF11_13525 CPF11_13525 PF13817 CPF11_13525 CPF11_13530 PF05717 CPF11_13530 CPF11_13535 PF01527 Transposase CPF11_13545 PF00999 Sodium/hydrogen exchanger family CPF11_13550 PF05016 Plasmid stabilisation system protein CPF11_13555 PF04221 RelB antitoxin CPF11_13560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPF11_13565 PF16872 CPF11_13565 CPF11_13590 PF00665 Integrase core domain CPF11_13590 PF09299 Mu transposase, C-terminal CPF11_13595 PF05621 CPF11_13595 CPF11_13600 PF06527 CPF11_13600 CPF11_13610 PF01850 PIN domain CPF11_13640 PF02321 Outer membrane efflux protein CPF11_13645 PF16576 CPF11_13645 CPF11_13650 PF00873 AcrB/AcrD/AcrF family CPF11_13655 PF00072 Response regulator receiver domain CPF11_13655 PF00486 Transcriptional regulatory protein, C terminal CPF11_13660 PF00512 His Kinase A (phospho-acceptor) domain CPF11_13660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_13665 PF01988 CPF11_13665 CPF11_13670 PF07690 Major Facilitator Superfamily CPF11_13680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CPF11_13680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CPF11_13680 PF04324 BFD-like [2Fe-2S] binding domain CPF11_13680 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_13680 PF13806 Rieske-like [2Fe-2S] domain CPF11_13695 PF06267 Family of unknown function (DUF1028) CPF11_13700 PF13738 Pyridine nucleotide-disulphide oxidoreductase CPF11_13705 PF00171 Aldehyde dehydrogenase family CPF11_13710 PF01042 Endoribonuclease L-PSP CPF11_13715 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CPF11_13720 PF00732 GMC oxidoreductase CPF11_13720 PF05199 GMC oxidoreductase CPF11_13725 PF01546 Peptidase family M20/M25/M40 CPF11_13725 PF07687 Peptidase dimerisation domain CPF11_13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_13730 PF03466 LysR substrate binding domain CPF11_13735 PF07642 CPF11_13735 CPF11_13755 PF01925 CPF11_13755 CPF11_13765 PF01527 Transposase CPF11_13785 PF10617 CPF11_13785 CPF11_13790 PF02322 CPF11_13790 CPF11_13795 PF01654 CPF11_13795 CPF11_13805 PF00665 Integrase core domain CPF11_13815 PF04014 Antidote-toxin recognition MazE CPF11_13820 PF01850 PIN domain CPF11_13825 PF04014 Antidote-toxin recognition MazE CPF11_13830 PF02452 PemK-like protein CPF11_13870 PF02498 CPF11_13870 CPF11_13875 PF00216 Bacterial DNA-binding protein CPF11_13880 PF05406 WGR domain CPF11_13885 PF01609 Transposase DDE domain CPF11_13885 PF05598 CPF11_13885 CPF11_13890 PF01909 Nucleotidyltransferase domain CPF11_13910 PF00665 Integrase core domain CPF11_13915 PF04982 CPF11_13915 CPF11_13920 PF13545 Crp-like helix-turn-helix domain CPF11_13925 PF04343 CPF11_13925 CPF11_13930 PF11160 CPF11_13930 CPF11_13935 PF09313 Domain of unknown function (DUF1971) CPF11_13940 PF00989 PAS fold CPF11_13945 PF04343 CPF11_13945 CPF11_13955 PF00107 Zinc-binding dehydrogenase CPF11_13955 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_13955 PF13823 Alcohol dehydrogenase GroES-associated CPF11_13960 PF01527 Transposase CPF11_13970 PF13701 CPF11_13970 CPF11_13980 PF07080 Protein of unknown function (DUF1348) CPF11_13985 PF13701 CPF11_13985 CPF11_13990 PF07080 Protein of unknown function (DUF1348) CPF11_14005 PF00440 Bacterial regulatory proteins, tetR family CPF11_14005 PF16925 CPF11_14005 CPF11_14010 PF00465 Iron-containing alcohol dehydrogenase CPF11_14015 PF00171 Aldehyde dehydrogenase family CPF11_14020 PF00665 Integrase core domain CPF11_14030 PF13546 CPF11_14030 CPF11_14040 PF01909 Nucleotidyltransferase domain CPF11_14045 PF08780 Nucleotidyltransferase substrate binding protein like CPF11_14050 PF02384 N-6 DNA Methylase CPF11_14050 PF12161 HsdM N-terminal domain CPF11_14055 PF12840 Helix-turn-helix domain CPF11_14060 PF03960 ArsC family CPF11_14065 PF02040 CPF11_14065 CPF11_14070 PF03358 NADPH-dependent FMN reductase CPF11_14075 PF13738 Pyridine nucleotide-disulphide oxidoreductase CPF11_14080 PF06296 CPF11_14080 CPF11_14085 PF13560 Helix-turn-helix domain CPF11_14100 PF00589 Phage integrase family CPF11_14100 PF02899 Phage integrase, N-terminal SAM-like domain CPF11_14105 PF04365 Protein of unknown function (DUF497) CPF11_14110 PF13560 Helix-turn-helix domain CPF11_14135 PF00239 Resolvase, N terminal domain CPF11_14165 PF02661 Fic/DOC family CPF11_14175 PF06769 Plasmid encoded toxin Txe CPF11_14180 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CPF11_14195 PF10387 Protein of unknown function (DUF2442) CPF11_14200 PF01850 PIN domain CPF11_14215 PF12441 CPF11_14215 CPF11_14230 PF10134 CPF11_14230 CPF11_14240 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_14245 PF00239 Resolvase, N terminal domain CPF11_14250 PF00239 Resolvase, N terminal domain CPF11_14260 PF00239 Resolvase, N terminal domain CPF11_14280 PF01850 PIN domain CPF11_14285 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system