CJF59_00335	PWY-5381	pyridine nucleotide cycling (plants)
CJF59_00335	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJF59_00335	PWY-7761	CJF59_00335
CJF59_00385	PWY-3341	L-proline biosynthesis III
CJF59_00385	PWY-4981	L-proline biosynthesis II (from arginine)
CJF59_00385	PWY-6344	L-ornithine degradation II (Stickland reaction)
CJF59_00425	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJF59_00505	PWY-6614	tetrahydrofolate biosynthesis
CJF59_00510	PWY-6749	CMP-legionaminate biosynthesis I
CJF59_00540	PWY-4381	fatty acid biosynthesis initiation I
CJF59_00540	PWY-5743	3-hydroxypropanoate cycle
CJF59_00540	PWY-5744	glyoxylate assimilation
CJF59_00540	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJF59_00540	PWY-6722	candicidin biosynthesis
CJF59_00545	PWY-2161	folate polyglutamylation
CJF59_00570	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJF59_00575	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJF59_00585	PWY-7887	CJF59_00585
CJF59_00585	PWY-7892	CJF59_00585
CJF59_00625	PWY-3221	dTDP-L-rhamnose biosynthesis II
CJF59_00625	PWY-6808	dTDP-D-forosamine biosynthesis
CJF59_00625	PWY-6942	dTDP-D-desosamine biosynthesis
CJF59_00625	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CJF59_00625	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CJF59_00625	PWY-6974	dTDP-L-olivose biosynthesis
CJF59_00625	PWY-6976	dTDP-L-mycarose biosynthesis
CJF59_00625	PWY-7104	dTDP-L-megosamine biosynthesis
CJF59_00625	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CJF59_00625	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CJF59_00625	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CJF59_00625	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CJF59_00625	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CJF59_00625	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CJF59_00625	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CJF59_00625	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CJF59_00625	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CJF59_00625	PWY-7688	CJF59_00625
CJF59_00625	PWY-7814	CJF59_00625
CJF59_00630	PWY-3221	dTDP-L-rhamnose biosynthesis II
CJF59_00630	PWY-6808	dTDP-D-forosamine biosynthesis
CJF59_00630	PWY-6942	dTDP-D-desosamine biosynthesis
CJF59_00630	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CJF59_00630	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CJF59_00630	PWY-6974	dTDP-L-olivose biosynthesis
CJF59_00630	PWY-6976	dTDP-L-mycarose biosynthesis
CJF59_00630	PWY-7104	dTDP-L-megosamine biosynthesis
CJF59_00630	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CJF59_00630	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CJF59_00630	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CJF59_00630	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CJF59_00630	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CJF59_00630	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CJF59_00630	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CJF59_00630	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CJF59_00630	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CJF59_00630	PWY-7688	CJF59_00630
CJF59_00630	PWY-7814	CJF59_00630
CJF59_00720	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CJF59_00935	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJF59_01005	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CJF59_01025	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJF59_01025	PWY-6416	quinate degradation II
CJF59_01025	PWY-6707	gallate biosynthesis
CJF59_01125	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJF59_01145	PWY-5392	reductive TCA cycle II
CJF59_01145	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJF59_01145	PWY-5690	TCA cycle II (plants and fungi)
CJF59_01145	PWY-5913	TCA cycle VI (obligate autotrophs)
CJF59_01145	PWY-6728	methylaspartate cycle
CJF59_01145	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJF59_01145	PWY-7254	TCA cycle VII (acetate-producers)
CJF59_01145	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJF59_01160	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJF59_01210	PWY-5101	L-isoleucine biosynthesis II
CJF59_01210	PWY-5103	L-isoleucine biosynthesis III
CJF59_01210	PWY-5104	L-isoleucine biosynthesis IV
CJF59_01210	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_01280	PWY-2941	L-lysine biosynthesis II
CJF59_01280	PWY-5097	L-lysine biosynthesis VI
CJF59_01350	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJF59_01350	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJF59_01350	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJF59_01350	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJF59_01365	PWY-2201	folate transformations I
CJF59_01365	PWY-3841	folate transformations II
CJF59_01365	PWY-7977	CJF59_01365
CJF59_01455	PWY-7851	CJF59_01455
CJF59_01730	PWY-6834	spermidine biosynthesis III
CJF59_01860	PWY-5033	nicotinate degradation II
CJF59_01860	PWY-6993	nicotine degradation II (pyrrolidine pathway)
CJF59_01860	PWY-7128	nicotine degradation III (VPP pathway)
CJF59_01860	PWY-722	nicotinate degradation I
CJF59_01900	PWY-4202	arsenate detoxification I (glutaredoxin)
CJF59_01900	PWY-4621	arsenate detoxification II (glutaredoxin)
CJF59_01980	PWY-5704	urea degradation II
CJF59_01985	PWY-5704	urea degradation II
CJF59_01990	PWY-5704	urea degradation II
CJF59_02145	PWY-5108	L-isoleucine biosynthesis V
CJF59_02145	PWY-5132	humulone biosynthesis
CJF59_02145	PWY-5133	cohumulone biosynthesis
CJF59_02145	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CJF59_02145	PWY-7118	chitin degradation to ethanol
CJF59_02145	PWY-7857	CJF59_02145
CJF59_02165	PWY-6683	sulfate reduction III (assimilatory)
CJF59_02460	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJF59_02490	PWY-5530	sorbitol biosynthesis II
CJF59_02495	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJF59_02495	PWY-5723	Rubisco shunt
CJF59_02500	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJF59_02500	PWY-6855	chitin degradation I (archaea)
CJF59_02500	PWY-6906	chitin derivatives degradation
CJF59_02515	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJF59_02515	PWY-3801	sucrose degradation II (sucrose synthase)
CJF59_02515	PWY-5054	sorbitol biosynthesis I
CJF59_02515	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CJF59_02515	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJF59_02515	PWY-5659	GDP-mannose biosynthesis
CJF59_02515	PWY-5723	Rubisco shunt
CJF59_02515	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJF59_02515	PWY-621	sucrose degradation III (sucrose invertase)
CJF59_02515	PWY-622	starch biosynthesis
CJF59_02515	PWY-6981	chitin biosynthesis
CJF59_02515	PWY-6992	1,5-anhydrofructose degradation
CJF59_02515	PWY-7238	sucrose biosynthesis II
CJF59_02515	PWY-7347	sucrose biosynthesis III
CJF59_02515	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJF59_02520	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJF59_02520	PWY-5723	Rubisco shunt
CJF59_02520	PWY-6891	thiazole biosynthesis II (Bacillus)
CJF59_02520	PWY-6892	thiazole biosynthesis I (E. coli)
CJF59_02520	PWY-6901	superpathway of glucose and xylose degradation
CJF59_02520	PWY-7560	methylerythritol phosphate pathway II
CJF59_02620	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJF59_02690	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CJF59_02690	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CJF59_02785	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CJF59_02795	PWY-5443	aminopropanol phosphate biosynthesis I
CJF59_02800	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CJF59_02800	PWY-6269	adenosylcobalamin salvage from cobinamide II
CJF59_02800	PWY-7961	CJF59_02800
CJF59_02800	PWY-7963	CJF59_02800
CJF59_02800	PWY-7964	CJF59_02800
CJF59_02800	PWY-7965	CJF59_02800
CJF59_02800	PWY-7966	CJF59_02800
CJF59_02800	PWY-7967	CJF59_02800
CJF59_02800	PWY-7968	CJF59_02800
CJF59_02800	PWY-7969	CJF59_02800
CJF59_02800	PWY-7970	CJF59_02800
CJF59_02800	PWY-7975	CJF59_02800
CJF59_02805	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CJF59_02805	PWY-6269	adenosylcobalamin salvage from cobinamide II
CJF59_02805	PWY-7964	CJF59_02805
CJF59_02805	PWY-7965	CJF59_02805
CJF59_02805	PWY-7966	CJF59_02805
CJF59_02805	PWY-7967	CJF59_02805
CJF59_02805	PWY-7968	CJF59_02805
CJF59_02805	PWY-7969	CJF59_02805
CJF59_02805	PWY-7970	CJF59_02805
CJF59_02810	PWY-6269	adenosylcobalamin salvage from cobinamide II
CJF59_02810	PWY-7962	CJF59_02810
CJF59_02810	PWY-7971	CJF59_02810
CJF59_02810	PWY-7972	CJF59_02810
CJF59_02940	PWY-5194	siroheme biosynthesis
CJF59_02940	PWY-5196	factor 430 biosynthesis
CJF59_02940	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJF59_03005	PWY-7883	CJF59_03005
CJF59_03040	PWY-5686	UMP biosynthesis
CJF59_03040	PWY-7790	CJF59_03040
CJF59_03040	PWY-7791	CJF59_03040
CJF59_03125	PWY-5057	L-valine degradation II
CJF59_03125	PWY-5076	L-leucine degradation III
CJF59_03125	PWY-5078	L-isoleucine degradation II
CJF59_03125	PWY-5101	L-isoleucine biosynthesis II
CJF59_03125	PWY-5103	L-isoleucine biosynthesis III
CJF59_03125	PWY-5104	L-isoleucine biosynthesis IV
CJF59_03125	PWY-5108	L-isoleucine biosynthesis V
CJF59_03125	PWY-7767	CJF59_03125
CJF59_03155	PWY-7805	CJF59_03155
CJF59_03155	PWY-7807	CJF59_03155
CJF59_03160	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJF59_03190	PWY-6823	molybdenum cofactor biosynthesis
CJF59_03200	PWY-6420	pyrroloquinoline quinone biosynthesis
CJF59_03275	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CJF59_03865	PWY-6936	seleno-amino acid biosynthesis
CJF59_03865	PWY-7274	D-cycloserine biosynthesis
CJF59_03865	PWY-7870	CJF59_03865
CJF59_03875	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJF59_03975	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJF59_04040	PWY-5316	nicotine biosynthesis
CJF59_04040	PWY-7342	superpathway of nicotine biosynthesis
CJF59_04045	PWY-5316	nicotine biosynthesis
CJF59_04045	PWY-5381	pyridine nucleotide cycling (plants)
CJF59_04045	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJF59_04045	PWY-7342	superpathway of nicotine biosynthesis
CJF59_04070	PWY-5386	methylglyoxal degradation I
CJF59_04070	PWY-7425	2-chloroacrylate degradation I
CJF59_04240	PWY-7560	methylerythritol phosphate pathway II
CJF59_04245	PWY-702	L-methionine biosynthesis II
CJF59_04265	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJF59_04265	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJF59_04265	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CJF59_04320	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJF59_04320	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CJF59_04320	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJF59_04320	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJF59_04320	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CJF59_04320	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJF59_04320	PWY-7205	CMP phosphorylation
CJF59_04320	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJF59_04320	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJF59_04320	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJF59_04320	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJF59_04320	PWY-7224	purine deoxyribonucleosides salvage
CJF59_04320	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJF59_04320	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJF59_04390	PWY-5958	acridone alkaloid biosynthesis
CJF59_04390	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJF59_04390	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJF59_04435	PWY-7802	CJF59_04435
CJF59_04440	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJF59_04440	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJF59_04450	PWY-1622	formaldehyde assimilation I (serine pathway)
CJF59_04450	PWY-181	photorespiration
CJF59_04450	PWY-2161	folate polyglutamylation
CJF59_04450	PWY-2201	folate transformations I
CJF59_04450	PWY-3661	glycine betaine degradation I
CJF59_04450	PWY-3661-1	glycine betaine degradation II (mammalian)
CJF59_04450	PWY-3841	folate transformations II
CJF59_04450	PWY-5497	purine nucleobases degradation II (anaerobic)
CJF59_04490	PWY-2781	<i>cis</i>-zeatin biosynthesis
CJF59_04495	PWY-5101	L-isoleucine biosynthesis II
CJF59_04495	PWY-5103	L-isoleucine biosynthesis III
CJF59_04495	PWY-5104	L-isoleucine biosynthesis IV
CJF59_04495	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJF59_04495	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJF59_04495	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJF59_04495	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_04500	PWY-5101	L-isoleucine biosynthesis II
CJF59_04500	PWY-5103	L-isoleucine biosynthesis III
CJF59_04500	PWY-5104	L-isoleucine biosynthesis IV
CJF59_04500	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJF59_04500	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJF59_04500	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJF59_04500	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_04505	PWY-5103	L-isoleucine biosynthesis III
CJF59_04505	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_04540	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJF59_04550	PWY-5381	pyridine nucleotide cycling (plants)
CJF59_04555	PWY-6164	3-dehydroquinate biosynthesis I
CJF59_04580	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJF59_04580	PWY-6549	L-glutamine biosynthesis III
CJF59_04580	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJF59_04580	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJF59_04620	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJF59_04620	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJF59_04620	PWY-7953	CJF59_04620
CJF59_04625	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJF59_04625	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJF59_04625	PWY-7953	CJF59_04625
CJF59_04630	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJF59_04630	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJF59_04630	PWY-7953	CJF59_04630
CJF59_04635	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_04635	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJF59_04635	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJF59_04635	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_04640	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_04640	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJF59_04640	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJF59_04640	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_04645	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJF59_04645	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJF59_04650	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_04650	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJF59_04650	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_04655	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJF59_04655	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJF59_04655	PWY-7953	CJF59_04655
CJF59_04700	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJF59_04715	PWY-3341	L-proline biosynthesis III
CJF59_04715	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJF59_04805	PWY-3781	aerobic respiration I (cytochrome c)
CJF59_04805	PWY-6692	Fe(II) oxidation
CJF59_04805	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CJF59_04805	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJF59_04820	PWY-7991	CJF59_04820
CJF59_04825	PWY-6167	flavin biosynthesis II (archaea)
CJF59_04825	PWY-6168	flavin biosynthesis III (fungi)
CJF59_04825	PWY-7980	CJF59_04825
CJF59_04830	PWY-6167	flavin biosynthesis II (archaea)
CJF59_04830	PWY-6168	flavin biosynthesis III (fungi)
CJF59_04830	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJF59_04830	PWY-7991	CJF59_04830
CJF59_04835	PWY-6167	flavin biosynthesis II (archaea)
CJF59_04835	PWY-6168	flavin biosynthesis III (fungi)
CJF59_04905	PWY-5663	tetrahydrobiopterin biosynthesis I
CJF59_04905	PWY-5664	tetrahydrobiopterin biosynthesis II
CJF59_04905	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJF59_04905	PWY-6703	preQ<sub>0</sub> biosynthesis
CJF59_04905	PWY-6983	tetrahydrobiopterin biosynthesis III
CJF59_04905	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJF59_04905	PWY-7852	CJF59_04905
CJF59_04920	PWY-5659	GDP-mannose biosynthesis
CJF59_04920	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CJF59_04925	PWY-6502	oxidized GTP and dGTP detoxification
CJF59_04980	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
CJF59_04980	PWY-5739	GDP-D-perosamine biosynthesis
CJF59_04980	PWY-5740	GDP-L-colitose biosynthesis
CJF59_04980	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CJF59_04980	PWY-7573	GDP-mycosamine biosynthesis
CJF59_04985	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
CJF59_05045	PWY-2301	<i>myo</i>-inositol biosynthesis
CJF59_05045	PWY-4702	phytate degradation I
CJF59_05045	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CJF59_05060	PWY-5659	GDP-mannose biosynthesis
CJF59_05060	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CJF59_05065	PWY-6749	CMP-legionaminate biosynthesis I
CJF59_05080	PWY-6936	seleno-amino acid biosynthesis
CJF59_05080	PWY-7274	D-cycloserine biosynthesis
CJF59_05080	PWY-7870	CJF59_05080
CJF59_05090	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CJF59_05090	PWY-7820	CJF59_05090
CJF59_05105	PWY-7183	pyrimidine nucleobases salvage I
CJF59_05140	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJF59_05140	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJF59_05140	PWY-7622	UDP-galactofuranose biosynthesis
CJF59_05160	PWY-7560	methylerythritol phosphate pathway II
CJF59_05210	PWY-6854	ethylene biosynthesis III (microbes)
CJF59_05295	PWY-6840	homoglutathione biosynthesis
CJF59_05295	PWY-7255	ergothioneine biosynthesis I (bacteria)
CJF59_05355	PWY-6829	tRNA methylation (yeast)
CJF59_05355	PWY-7285	methylwyosine biosynthesis
CJF59_05355	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CJF59_05375	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJF59_05430	PWY-4381	fatty acid biosynthesis initiation I
CJF59_05515	PWY-3781	aerobic respiration I (cytochrome c)
CJF59_05515	PWY-4521	arsenite oxidation I (respiratory)
CJF59_05515	PWY-6692	Fe(II) oxidation
CJF59_05515	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJF59_05605	PWY-1622	formaldehyde assimilation I (serine pathway)
CJF59_05605	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJF59_05605	PWY-5913	TCA cycle VI (obligate autotrophs)
CJF59_05605	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJF59_05605	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CJF59_05605	PWY-6549	L-glutamine biosynthesis III
CJF59_05605	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJF59_05605	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJF59_05605	PWY-7124	ethylene biosynthesis V (engineered)
CJF59_05635	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJF59_05670	PWY-6938	NADH repair
CJF59_05775	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJF59_05775	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJF59_05780	PWY-3961	phosphopantothenate biosynthesis II
CJF59_05820	PWY-6749	CMP-legionaminate biosynthesis I
CJF59_05825	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJF59_05830	PWY-181	photorespiration
CJF59_06035	PWY-2201	folate transformations I
CJF59_06035	PWY-3841	folate transformations II
CJF59_06040	PWY-6700	queuosine biosynthesis
CJF59_06045	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJF59_06045	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJF59_06045	PWY-6936	seleno-amino acid biosynthesis
CJF59_06045	PWY-702	L-methionine biosynthesis II
CJF59_06175	PWY-5913	TCA cycle VI (obligate autotrophs)
CJF59_06175	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CJF59_06175	PWY-6638	sulfolactate degradation III
CJF59_06175	PWY-6642	(<i>R</i>)-cysteate degradation
CJF59_06175	PWY-6643	coenzyme M biosynthesis II
CJF59_06175	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJF59_06175	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJF59_06175	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJF59_06280	PWY-7782	CJF59_06280
CJF59_06280	PWY-7783	CJF59_06280
CJF59_06290	PWY-6348	phosphate acquisition
CJF59_06295	PWY-723	alkylnitronates degradation
CJF59_06325	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJF59_06325	PWY-6596	adenosine nucleotides degradation I
CJF59_06325	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJF59_06375	PWY-4983	L-citrulline-nitric oxide cycle
CJF59_06375	PWY-4984	urea cycle
CJF59_06375	PWY-5	canavanine biosynthesis
CJF59_06375	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJF59_06375	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJF59_06395	PWY-6891	thiazole biosynthesis II (Bacillus)
CJF59_06395	PWY-6892	thiazole biosynthesis I (E. coli)
CJF59_06395	PWY-7560	methylerythritol phosphate pathway II
CJF59_06455	PWY-6823	molybdenum cofactor biosynthesis
CJF59_06465	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CJF59_06465	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
CJF59_06505	PWY-1281	sulfoacetaldehyde degradation I
CJF59_06505	PWY-5482	pyruvate fermentation to acetate II
CJF59_06505	PWY-5485	pyruvate fermentation to acetate IV
CJF59_06505	PWY-5497	purine nucleobases degradation II (anaerobic)
CJF59_06505	PWY-6637	sulfolactate degradation II
CJF59_06510	PWY-5482	pyruvate fermentation to acetate II
CJF59_06510	PWY-5485	pyruvate fermentation to acetate IV
CJF59_06510	PWY-5497	purine nucleobases degradation II (anaerobic)
CJF59_06580	PWY-5392	reductive TCA cycle II
CJF59_06580	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJF59_06580	PWY-5690	TCA cycle II (plants and fungi)
CJF59_06580	PWY-5913	TCA cycle VI (obligate autotrophs)
CJF59_06580	PWY-6728	methylaspartate cycle
CJF59_06580	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJF59_06580	PWY-7254	TCA cycle VII (acetate-producers)
CJF59_06580	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJF59_06590	PWY-6683	sulfate reduction III (assimilatory)
CJF59_06615	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJF59_06625	PWY-5194	siroheme biosynthesis
CJF59_06625	PWY-5196	factor 430 biosynthesis
CJF59_06625	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJF59_06630	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJF59_06735	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJF59_06735	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJF59_06735	PWY-5057	L-valine degradation II
CJF59_06735	PWY-5076	L-leucine degradation III
CJF59_06735	PWY-5078	L-isoleucine degradation II
CJF59_06735	PWY-5079	L-phenylalanine degradation III
CJF59_06735	PWY-5082	L-methionine degradation III
CJF59_06735	PWY-5480	pyruvate fermentation to ethanol I
CJF59_06735	PWY-5486	pyruvate fermentation to ethanol II
CJF59_06735	PWY-5751	phenylethanol biosynthesis
CJF59_06735	PWY-6313	serotonin degradation
CJF59_06735	PWY-6333	acetaldehyde biosynthesis I
CJF59_06735	PWY-6342	noradrenaline and adrenaline degradation
CJF59_06735	PWY-6587	pyruvate fermentation to ethanol III
CJF59_06735	PWY-6802	salidroside biosynthesis
CJF59_06735	PWY-6871	3-methylbutanol biosynthesis
CJF59_06735	PWY-7013	L-1,2-propanediol degradation
CJF59_06735	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_06735	PWY-7118	chitin degradation to ethanol
CJF59_06735	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJF59_06735	PWY-7798	CJF59_06735
CJF59_06865	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_06865	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJF59_06865	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJF59_06865	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_07060	PWY-5874	heme degradation
CJF59_07100	PWY-5169	cyanurate degradation
CJF59_07100	PWY-5703	urea degradation I
CJF59_07100	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJF59_07230	PWY-6910	hydroxymethylpyrimidine salvage
CJF59_07230	PWY-7356	thiamin salvage IV (yeast)
CJF59_07230	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJF59_07285	PWY-6098	diploterol and cycloartenol biosynthesis
CJF59_07285	PWY-7072	hopanoid biosynthesis (bacteria)
CJF59_07350	PWY-5497	purine nucleobases degradation II (anaerobic)
CJF59_07350	PWY-6606	guanosine nucleotides degradation II
CJF59_07350	PWY-6608	guanosine nucleotides degradation III
CJF59_07350	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJF59_07370	PWY-5691	urate degradation to allantoin I
CJF59_07370	PWY-7394	urate degradation to allantoin II
CJF59_07370	PWY-7849	CJF59_07370
CJF59_07375	PWY-5691	urate degradation to allantoin I
CJF59_07375	PWY-7394	urate degradation to allantoin II
CJF59_07375	PWY-7849	CJF59_07375
CJF59_07385	PWY-5497	purine nucleobases degradation II (anaerobic)
CJF59_07385	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJF59_07385	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CJF59_07385	PWY-6596	adenosine nucleotides degradation I
CJF59_07385	PWY-6606	guanosine nucleotides degradation II
CJF59_07385	PWY-6607	guanosine nucleotides degradation I
CJF59_07385	PWY-6608	guanosine nucleotides degradation III
CJF59_07385	PWY-6999	theophylline degradation
CJF59_07390	PWY-5497	purine nucleobases degradation II (anaerobic)
CJF59_07390	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJF59_07390	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CJF59_07390	PWY-6596	adenosine nucleotides degradation I
CJF59_07390	PWY-6606	guanosine nucleotides degradation II
CJF59_07390	PWY-6607	guanosine nucleotides degradation I
CJF59_07390	PWY-6608	guanosine nucleotides degradation III
CJF59_07390	PWY-6999	theophylline degradation
CJF59_07400	PWY-5169	cyanurate degradation
CJF59_07400	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJF59_07415	PWY-6832	2-aminoethylphosphonate degradation II
CJF59_07470	PWY-6654	phosphopantothenate biosynthesis III
CJF59_07485	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJF59_07485	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJF59_07485	PWY-5057	L-valine degradation II
CJF59_07485	PWY-5076	L-leucine degradation III
CJF59_07485	PWY-5078	L-isoleucine degradation II
CJF59_07485	PWY-5079	L-phenylalanine degradation III
CJF59_07485	PWY-5082	L-methionine degradation III
CJF59_07485	PWY-5480	pyruvate fermentation to ethanol I
CJF59_07485	PWY-5486	pyruvate fermentation to ethanol II
CJF59_07485	PWY-5751	phenylethanol biosynthesis
CJF59_07485	PWY-6313	serotonin degradation
CJF59_07485	PWY-6333	acetaldehyde biosynthesis I
CJF59_07485	PWY-6342	noradrenaline and adrenaline degradation
CJF59_07485	PWY-6587	pyruvate fermentation to ethanol III
CJF59_07485	PWY-6802	salidroside biosynthesis
CJF59_07485	PWY-6871	3-methylbutanol biosynthesis
CJF59_07485	PWY-7013	L-1,2-propanediol degradation
CJF59_07485	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_07485	PWY-7118	chitin degradation to ethanol
CJF59_07485	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJF59_07485	PWY-7798	CJF59_07485
CJF59_07550	PWY-4261	glycerol degradation I
CJF59_07550	PWY-6118	glycerol-3-phosphate shuttle
CJF59_07550	PWY-6952	glycerophosphodiester degradation
CJF59_07560	PWY-4261	glycerol degradation I
CJF59_07580	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJF59_07580	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJF59_07580	PWY-6896	thiamin salvage I
CJF59_07580	PWY-6897	thiamin salvage II
CJF59_07655	PWY-7851	CJF59_07655
CJF59_07660	PWY-5839	menaquinol-7 biosynthesis
CJF59_07660	PWY-5844	menaquinol-9 biosynthesis
CJF59_07660	PWY-5849	menaquinol-6 biosynthesis
CJF59_07660	PWY-5890	menaquinol-10 biosynthesis
CJF59_07660	PWY-5891	menaquinol-11 biosynthesis
CJF59_07660	PWY-5892	menaquinol-12 biosynthesis
CJF59_07660	PWY-5895	menaquinol-13 biosynthesis
CJF59_07695	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJF59_07695	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CJF59_07700	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CJF59_07700	PWY-7177	UTP and CTP dephosphorylation II
CJF59_07700	PWY-7185	UTP and CTP dephosphorylation I
CJF59_07710	PWY-1042	glycolysis IV (plant cytosol)
CJF59_07710	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJF59_07710	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJF59_07710	PWY-7003	glycerol degradation to butanol
CJF59_07720	PWY-5958	acridone alkaloid biosynthesis
CJF59_07720	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJF59_07720	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJF59_07725	PWY-5958	acridone alkaloid biosynthesis
CJF59_07725	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJF59_07725	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJF59_07740	PWY-6823	molybdenum cofactor biosynthesis
CJF59_07760	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJF59_07760	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJF59_07765	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJF59_07765	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJF59_07785	PWY-5269	cardiolipin biosynthesis II
CJF59_07785	PWY-5668	cardiolipin biosynthesis I
CJF59_07785	PWY-7817	CJF59_07785
CJF59_07800	PWY-6123	inosine-5'-phosphate biosynthesis I
CJF59_07800	PWY-6124	inosine-5'-phosphate biosynthesis II
CJF59_07800	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJF59_07800	PWY-7234	inosine-5'-phosphate biosynthesis III
CJF59_07805	PWY-6123	inosine-5'-phosphate biosynthesis I
CJF59_07805	PWY-6124	inosine-5'-phosphate biosynthesis II
CJF59_07805	PWY-7234	inosine-5'-phosphate biosynthesis III
CJF59_07810	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJF59_07810	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJF59_07810	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJF59_07820	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJF59_07820	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJF59_07820	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJF59_07825	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJF59_07825	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJF59_07825	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJF59_07895	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJF59_07900	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CJF59_07905	PWY-2941	L-lysine biosynthesis II
CJF59_07905	PWY-2942	L-lysine biosynthesis III
CJF59_07905	PWY-5097	L-lysine biosynthesis VI
CJF59_07945	PWY-4381	fatty acid biosynthesis initiation I
CJF59_07945	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CJF59_07945	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJF59_07950	PWY-5367	petroselinate biosynthesis
CJF59_07950	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJF59_07950	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJF59_07950	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJF59_07950	PWY-5994	palmitate biosynthesis I (animals and fungi)
CJF59_07950	PWY-6113	superpathway of mycolate biosynthesis
CJF59_07950	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJF59_07950	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJF59_07950	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJF59_07950	PWY-7663	gondoate biosynthesis (anaerobic)
CJF59_07950	PWY-7664	oleate biosynthesis IV (anaerobic)
CJF59_07950	PWY-7858	CJF59_07950
CJF59_07950	PWYG-321	mycolate biosynthesis
CJF59_07990	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
CJF59_08000	PWY-6683	sulfate reduction III (assimilatory)
CJF59_08010	PWY-5278	sulfite oxidation III
CJF59_08010	PWY-5340	sulfate activation for sulfonation
CJF59_08010	PWY-6683	sulfate reduction III (assimilatory)
CJF59_08010	PWY-6932	selenate reduction
CJF59_08015	PWY-5278	sulfite oxidation III
CJF59_08015	PWY-5340	sulfate activation for sulfonation
CJF59_08015	PWY-6683	sulfate reduction III (assimilatory)
CJF59_08015	PWY-6932	selenate reduction
CJF59_08030	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJF59_08035	PWY-6703	preQ<sub>0</sub> biosynthesis
CJF59_08040	PWY-6703	preQ<sub>0</sub> biosynthesis
CJF59_08050	PWY-7254	TCA cycle VII (acetate-producers)
CJF59_08060	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJF59_08065	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJF59_08065	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJF59_08065	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJF59_08065	PWY-6113	superpathway of mycolate biosynthesis
CJF59_08065	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJF59_08065	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJF59_08065	PWY-7663	gondoate biosynthesis (anaerobic)
CJF59_08065	PWY-7664	oleate biosynthesis IV (anaerobic)
CJF59_08065	PWY-7858	CJF59_08065
CJF59_08065	PWYG-321	mycolate biosynthesis
CJF59_08070	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CJF59_08070	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJF59_08100	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJF59_08100	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJF59_08100	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJF59_08100	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CJF59_08100	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJF59_08100	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJF59_08105	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_08105	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_08135	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CJF59_08190	PWY-723	alkylnitronates degradation
CJF59_08195	PWY-2941	L-lysine biosynthesis II
CJF59_08195	PWY-2942	L-lysine biosynthesis III
CJF59_08195	PWY-5097	L-lysine biosynthesis VI
CJF59_08195	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CJF59_08195	PWY-6559	spermidine biosynthesis II
CJF59_08195	PWY-6562	norspermidine biosynthesis
CJF59_08195	PWY-7153	grixazone biosynthesis
CJF59_08195	PWY-7977	CJF59_08195
CJF59_08200	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CJF59_08200	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CJF59_08200	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CJF59_08200	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CJF59_08200	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
CJF59_08200	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
CJF59_08200	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
CJF59_08200	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CJF59_08200	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CJF59_08200	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
CJF59_08235	PWY-6823	molybdenum cofactor biosynthesis
CJF59_08240	PWY-6749	CMP-legionaminate biosynthesis I
CJF59_08245	PWY-3801	sucrose degradation II (sucrose synthase)
CJF59_08245	PWY-6527	stachyose degradation
CJF59_08245	PWY-7238	sucrose biosynthesis II
CJF59_08245	PWY-7343	UDP-glucose biosynthesis
CJF59_08245	PWY-7817	CJF59_08245
CJF59_08255	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJF59_08255	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJF59_08275	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CJF59_08280	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CJF59_08315	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJF59_08315	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJF59_08315	PWY-6897	thiamin salvage II
CJF59_08315	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJF59_08315	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJF59_08315	PWY-7356	thiamin salvage IV (yeast)
CJF59_08315	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJF59_08320	PWY-6891	thiazole biosynthesis II (Bacillus)
CJF59_08320	PWY-6892	thiazole biosynthesis I (E. coli)
CJF59_08330	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJF59_08330	PWY-7806	CJF59_08330
CJF59_08340	PWY-1042	glycolysis IV (plant cytosol)
CJF59_08340	PWY-1622	formaldehyde assimilation I (serine pathway)
CJF59_08340	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJF59_08340	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJF59_08340	PWY-5723	Rubisco shunt
CJF59_08340	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJF59_08340	PWY-6886	1-butanol autotrophic biosynthesis
CJF59_08340	PWY-6901	superpathway of glucose and xylose degradation
CJF59_08340	PWY-7003	glycerol degradation to butanol
CJF59_08340	PWY-7124	ethylene biosynthesis V (engineered)
CJF59_08340	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJF59_08355	PWY-6823	molybdenum cofactor biosynthesis
CJF59_08365	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJF59_08385	PWY-6823	molybdenum cofactor biosynthesis
CJF59_08385	PWY-7887	CJF59_08385
CJF59_08400	PWY-5269	cardiolipin biosynthesis II
CJF59_08400	PWY-5668	cardiolipin biosynthesis I
CJF59_08400	PWY-7817	CJF59_08400
CJF59_08410	PWY-7533	gliotoxin biosynthesis
CJF59_08485	PWY-3461	L-tyrosine biosynthesis II
CJF59_08485	PWY-3462	L-phenylalanine biosynthesis II
CJF59_08485	PWY-6120	L-tyrosine biosynthesis III
CJF59_08485	PWY-6627	salinosporamide A biosynthesis
CJF59_08485	PWY-7626	bacilysin biosynthesis
CJF59_08505	PWY-5686	UMP biosynthesis
CJF59_08505	PWY-7790	CJF59_08505
CJF59_08505	PWY-7791	CJF59_08505
CJF59_08510	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJF59_08510	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJF59_08525	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJF59_08525	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJF59_08525	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJF59_08525	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJF59_08525	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJF59_08525	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJF59_08525	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJF59_08525	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJF59_08530	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJF59_08530	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJF59_08530	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJF59_08530	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJF59_08530	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJF59_08530	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJF59_08530	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJF59_08530	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJF59_08585	PWY-6123	inosine-5'-phosphate biosynthesis I
CJF59_08585	PWY-7234	inosine-5'-phosphate biosynthesis III
CJF59_08690	PWY-6531	mannitol cycle
CJF59_08760	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJF59_08895	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJF59_08895	PWY-5686	UMP biosynthesis
CJF59_08895	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJF59_08895	PWY-7790	CJF59_08895
CJF59_08895	PWY-7791	CJF59_08895
CJF59_08900	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJF59_08900	PWY-5686	UMP biosynthesis
CJF59_08900	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJF59_08900	PWY-7790	CJF59_08900
CJF59_08900	PWY-7791	CJF59_08900
CJF59_08915	PWY-1042	glycolysis IV (plant cytosol)
CJF59_08915	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJF59_08915	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJF59_08915	PWY-5723	Rubisco shunt
CJF59_08915	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJF59_08915	PWY-6886	1-butanol autotrophic biosynthesis
CJF59_08915	PWY-6901	superpathway of glucose and xylose degradation
CJF59_08915	PWY-7003	glycerol degradation to butanol
CJF59_08915	PWY-7124	ethylene biosynthesis V (engineered)
CJF59_08915	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJF59_09080	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJF59_09315	PWY-7801	CJF59_09315
CJF59_09450	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJF59_09450	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJF59_09450	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJF59_09455	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJF59_09455	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJF59_09465	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJF59_09465	PWY-5723	Rubisco shunt
CJF59_09490	PWY-7851	CJF59_09490
CJF59_09495	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJF59_09515	PWY-4983	L-citrulline-nitric oxide cycle
CJF59_09515	PWY-4984	urea cycle
CJF59_09515	PWY-5	canavanine biosynthesis
CJF59_09515	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJF59_09515	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJF59_09520	PWY-2941	L-lysine biosynthesis II
CJF59_09520	PWY-2942	L-lysine biosynthesis III
CJF59_09520	PWY-5097	L-lysine biosynthesis VI
CJF59_09530	PWY-3821	galactose degradation III
CJF59_09530	PWY-6317	galactose degradation I (Leloir pathway)
CJF59_09530	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJF59_09530	PWY-6527	stachyose degradation
CJF59_09530	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJF59_09530	PWY-7344	UDP-D-galactose biosynthesis
CJF59_09540	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJF59_09540	PWY-5057	L-valine degradation II
CJF59_09540	PWY-5076	L-leucine degradation III
CJF59_09540	PWY-5078	L-isoleucine degradation II
CJF59_09540	PWY-5079	L-phenylalanine degradation III
CJF59_09540	PWY-5082	L-methionine degradation III
CJF59_09540	PWY-5480	pyruvate fermentation to ethanol I
CJF59_09540	PWY-5486	pyruvate fermentation to ethanol II
CJF59_09540	PWY-5751	phenylethanol biosynthesis
CJF59_09540	PWY-6313	serotonin degradation
CJF59_09540	PWY-6333	acetaldehyde biosynthesis I
CJF59_09540	PWY-6342	noradrenaline and adrenaline degradation
CJF59_09540	PWY-6587	pyruvate fermentation to ethanol III
CJF59_09540	PWY-6802	salidroside biosynthesis
CJF59_09540	PWY-6871	3-methylbutanol biosynthesis
CJF59_09540	PWY-7013	L-1,2-propanediol degradation
CJF59_09540	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_09540	PWY-7118	chitin degradation to ethanol
CJF59_09540	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJF59_09555	PWY-6654	phosphopantothenate biosynthesis III
CJF59_09815	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CJF59_09855	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJF59_09855	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJF59_09860	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJF59_09860	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJF59_09885	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJF59_09895	PWY-4381	fatty acid biosynthesis initiation I
CJF59_09895	PWY-5743	3-hydroxypropanoate cycle
CJF59_09895	PWY-5744	glyoxylate assimilation
CJF59_09895	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJF59_09895	PWY-6722	candicidin biosynthesis
CJF59_09910	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJF59_09910	PWY-6164	3-dehydroquinate biosynthesis I
CJF59_09930	PWY-5669	phosphatidylethanolamine biosynthesis I
CJF59_09975	PWY-5386	methylglyoxal degradation I
CJF59_09990	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJF59_10005	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJF59_10005	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJF59_10010	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJF59_10015	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJF59_10035	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJF59_10040	PWY-5686	UMP biosynthesis
CJF59_10040	PWY-7790	CJF59_10040
CJF59_10040	PWY-7791	CJF59_10040
CJF59_10085	PWY-6936	seleno-amino acid biosynthesis
CJF59_10130	PWY-7884	CJF59_10130
CJF59_10140	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CJF59_10140	PWY-6167	flavin biosynthesis II (archaea)
CJF59_10140	PWY-6168	flavin biosynthesis III (fungi)
CJF59_10140	PWY-7863	CJF59_10140
CJF59_10150	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CJF59_10150	PWY-5389	3-methylthiopropanoate biosynthesis
CJF59_10155	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CJF59_10180	PWY-4981	L-proline biosynthesis II (from arginine)
CJF59_10180	PWY-4984	urea cycle
CJF59_10180	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJF59_10285	PWY-5108	L-isoleucine biosynthesis V
CJF59_10285	PWY-5132	humulone biosynthesis
CJF59_10285	PWY-5133	cohumulone biosynthesis
CJF59_10285	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CJF59_10285	PWY-7118	chitin degradation to ethanol
CJF59_10285	PWY-7857	CJF59_10285
CJF59_10300	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CJF59_10300	PWY-6853	ethylene biosynthesis II (microbes)
CJF59_10300	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJF59_10370	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJF59_10415	PWY-5963	thio-molybdenum cofactor biosynthesis
CJF59_10475	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJF59_10475	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJF59_10505	PWY-5386	methylglyoxal degradation I
CJF59_10520	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJF59_10520	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJF59_10520	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJF59_10520	PWY-5994	palmitate biosynthesis I (animals and fungi)
CJF59_10520	PWY-6113	superpathway of mycolate biosynthesis
CJF59_10520	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJF59_10520	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJF59_10520	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJF59_10520	PWY-7663	gondoate biosynthesis (anaerobic)
CJF59_10520	PWY-7664	oleate biosynthesis IV (anaerobic)
CJF59_10520	PWY-7858	CJF59_10520
CJF59_10520	PWYG-321	mycolate biosynthesis
CJF59_10545	PWY-7560	methylerythritol phosphate pathway II
CJF59_10550	PWY-5667	CDP-diacylglycerol biosynthesis I
CJF59_10550	PWY-5981	CDP-diacylglycerol biosynthesis III
CJF59_10550	PWY-7817	CJF59_10550
CJF59_10585	PWY-6012	acyl carrier protein metabolism I
CJF59_10585	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CJF59_10585	PWY-6289	petrobactin biosynthesis
CJF59_10600	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJF59_10600	PWY-6148	tetrahydromethanopterin biosynthesis
CJF59_10600	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJF59_10600	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJF59_10600	PWY-7852	CJF59_10600
CJF59_10600	PWY-7853	CJF59_10600
CJF59_10610	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJF59_10610	PWY-5743	3-hydroxypropanoate cycle
CJF59_10610	PWY-5744	glyoxylate assimilation
CJF59_10610	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJF59_10610	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJF59_10610	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJF59_10610	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJF59_10625	PWY-5344	L-homocysteine biosynthesis
CJF59_10660	PWY-381	nitrate reduction II (assimilatory)
CJF59_10660	PWY-5675	nitrate reduction V (assimilatory)
CJF59_10660	PWY-6549	L-glutamine biosynthesis III
CJF59_10660	PWY-6963	ammonia assimilation cycle I
CJF59_10660	PWY-6964	ammonia assimilation cycle II
CJF59_10690	PWY-5913	TCA cycle VI (obligate autotrophs)
CJF59_10690	PWY-6549	L-glutamine biosynthesis III
CJF59_10690	PWY-6728	methylaspartate cycle
CJF59_10690	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJF59_10690	PWY-7124	ethylene biosynthesis V (engineered)
CJF59_10690	PWY-7254	TCA cycle VII (acetate-producers)
CJF59_10690	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJF59_10695	PWY-101	photosynthesis light reactions
CJF59_10730	PWY-1042	glycolysis IV (plant cytosol)
CJF59_10730	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJF59_10730	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJF59_10730	PWY-5723	Rubisco shunt
CJF59_10730	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJF59_10730	PWY-6886	1-butanol autotrophic biosynthesis
CJF59_10730	PWY-6901	superpathway of glucose and xylose degradation
CJF59_10730	PWY-7003	glycerol degradation to butanol
CJF59_10730	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJF59_10730	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJF59_10945	PWY-2201	folate transformations I
CJF59_10945	PWY-5497	purine nucleobases degradation II (anaerobic)
CJF59_10945	PWY-7909	CJF59_10945
CJF59_11560	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CJF59_11560	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CJF59_11560	PWY-7766	CJF59_11560
CJF59_11575	PWY-2723	trehalose degradation V
CJF59_11575	PWY-3801	sucrose degradation II (sucrose synthase)
CJF59_11575	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CJF59_11575	PWY-5661	GDP-glucose biosynthesis
CJF59_11575	PWY-5940	streptomycin biosynthesis
CJF59_11575	PWY-5941	glycogen degradation II (eukaryotic)
CJF59_11575	PWY-622	starch biosynthesis
CJF59_11575	PWY-6317	galactose degradation I (Leloir pathway)
CJF59_11575	PWY-6731	starch degradation III
CJF59_11575	PWY-6737	starch degradation V
CJF59_11575	PWY-6749	CMP-legionaminate biosynthesis I
CJF59_11575	PWY-6981	chitin biosynthesis
CJF59_11575	PWY-7238	sucrose biosynthesis II
CJF59_11575	PWY-7343	UDP-glucose biosynthesis
CJF59_11575	PWY-7900	CJF59_11575
CJF59_11575	PWY-7902	CJF59_11575
CJF59_11620	PWY-6167	flavin biosynthesis II (archaea)
CJF59_11655	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJF59_11655	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJF59_11655	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJF59_11705	PWY-2941	L-lysine biosynthesis II
CJF59_11705	PWY-2942	L-lysine biosynthesis III
CJF59_11705	PWY-5097	L-lysine biosynthesis VI
CJF59_11705	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJF59_11705	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CJF59_11705	PWY-6559	spermidine biosynthesis II
CJF59_11705	PWY-6562	norspermidine biosynthesis
CJF59_11705	PWY-7153	grixazone biosynthesis
CJF59_11705	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJF59_11705	PWY-7977	CJF59_11705
CJF59_11720	PWY-3781	aerobic respiration I (cytochrome c)
CJF59_11720	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJF59_11720	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJF59_11720	PWY-5690	TCA cycle II (plants and fungi)
CJF59_11720	PWY-6728	methylaspartate cycle
CJF59_11720	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJF59_11720	PWY-7254	TCA cycle VII (acetate-producers)
CJF59_11720	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJF59_11725	PWY-3781	aerobic respiration I (cytochrome c)
CJF59_11725	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJF59_11725	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJF59_11725	PWY-5690	TCA cycle II (plants and fungi)
CJF59_11725	PWY-6728	methylaspartate cycle
CJF59_11725	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJF59_11725	PWY-7254	TCA cycle VII (acetate-producers)
CJF59_11725	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJF59_11740	PWY-1042	glycolysis IV (plant cytosol)
CJF59_11740	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJF59_11740	PWY-6886	1-butanol autotrophic biosynthesis
CJF59_11740	PWY-6901	superpathway of glucose and xylose degradation
CJF59_11740	PWY-7003	glycerol degradation to butanol
CJF59_11745	PWY-1042	glycolysis IV (plant cytosol)
CJF59_11745	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJF59_11745	PWY-6901	superpathway of glucose and xylose degradation
CJF59_11745	PWY-7003	glycerol degradation to butanol
CJF59_11750	PWY-6891	thiazole biosynthesis II (Bacillus)
CJF59_11750	PWY-6892	thiazole biosynthesis I (E. coli)
CJF59_11750	PWY-7560	methylerythritol phosphate pathway II
CJF59_11760	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJF59_11760	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
CJF59_11800	PWY-6906	chitin derivatives degradation
CJF59_11800	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CJF59_11800	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CJF59_11840	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJF59_11840	PWY-6148	tetrahydromethanopterin biosynthesis
CJF59_11840	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJF59_11840	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJF59_11850	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJF59_11855	PWY-7205	CMP phosphorylation
CJF59_11890	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_11890	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJF59_11890	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJF59_11890	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_11925	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_11925	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJF59_11925	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJF59_11925	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_11930	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_11930	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_11950	PWY-6871	3-methylbutanol biosynthesis
CJF59_11975	PWY-6605	adenine and adenosine salvage II
CJF59_11975	PWY-6610	adenine and adenosine salvage IV
CJF59_11975	PWY-7805	CJF59_11975
CJF59_11975	PWY-7807	CJF59_11975
CJF59_12025	PWY-3781	aerobic respiration I (cytochrome c)
CJF59_12025	PWY-4521	arsenite oxidation I (respiratory)
CJF59_12025	PWY-6692	Fe(II) oxidation
CJF59_12025	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJF59_12025	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
CJF59_12065	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJF59_12065	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJF59_12065	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJF59_12085	PWY-5686	UMP biosynthesis
CJF59_12085	PWY-7790	CJF59_12085
CJF59_12085	PWY-7791	CJF59_12085
CJF59_12160	PWY-7980	CJF59_12160
CJF59_12170	PWY-7980	CJF59_12170
CJF59_12180	PWY-6700	queuosine biosynthesis
CJF59_12320	PWY-7142	cyanide detoxification II
CJF59_12595	PWY-6098	diploterol and cycloartenol biosynthesis
CJF59_12595	PWY-7072	hopanoid biosynthesis (bacteria)
CJF59_12600	PWY-7072	hopanoid biosynthesis (bacteria)
CJF59_12610	PWY-7072	hopanoid biosynthesis (bacteria)
CJF59_12620	PWY-5152	leucodelphinidin biosynthesis
CJF59_12630	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CJF59_12675	PWY-7805	CJF59_12675
CJF59_12675	PWY-7807	CJF59_12675
CJF59_12715	PWY-6700	queuosine biosynthesis
CJF59_12720	PWY-6700	queuosine biosynthesis
CJF59_12725	PWY-6700	queuosine biosynthesis
CJF59_12745	PWY-2201	folate transformations I
CJF59_12745	PWY-3841	folate transformations II
CJF59_12750	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CJF59_12750	PWY-2201	folate transformations I
CJF59_12750	PWY-3841	folate transformations II
CJF59_12750	PWY-5030	L-histidine degradation III
CJF59_12750	PWY-5497	purine nucleobases degradation II (anaerobic)
CJF59_12750	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJF59_12750	PWY-7909	CJF59_12750
CJF59_12880	PWY-5686	UMP biosynthesis
CJF59_12930	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJF59_12930	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJF59_12930	PWY-6897	thiamin salvage II
CJF59_12930	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJF59_12930	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJF59_12930	PWY-7356	thiamin salvage IV (yeast)
CJF59_12930	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJF59_12960	PWY-4041	&gamma;-glutamyl cycle
CJF59_12960	PWY-4061	glutathione-mediated detoxification I
CJF59_12960	PWY-5826	hypoglycin biosynthesis
CJF59_12960	PWY-6842	glutathione-mediated detoxification II
CJF59_12960	PWY-7112	4-hydroxy-2-nonenal detoxification
CJF59_12960	PWY-7559	glutathione degradation (DUG pathway - yeast)
CJF59_12965	PWY-7799	CJF59_12965
CJF59_12965	PWY-7800	CJF59_12965
CJF59_13035	PWY-2941	L-lysine biosynthesis II
CJF59_13035	PWY-2942	L-lysine biosynthesis III
CJF59_13035	PWY-5097	L-lysine biosynthesis VI
CJF59_13040	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJF59_13040	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CJF59_13050	PWY-6123	inosine-5'-phosphate biosynthesis I
CJF59_13050	PWY-6124	inosine-5'-phosphate biosynthesis II
CJF59_13050	PWY-7234	inosine-5'-phosphate biosynthesis III
CJF59_13110	PWY-7980	CJF59_13110
CJF59_13150	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJF59_13225	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJF59_13225	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJF59_13705	PWY-5747	2-methylcitrate cycle II
CJF59_13710	PWY-5108	L-isoleucine biosynthesis V
CJF59_13710	PWY-5132	humulone biosynthesis
CJF59_13710	PWY-5133	cohumulone biosynthesis
CJF59_13710	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CJF59_13710	PWY-7118	chitin degradation to ethanol
CJF59_13710	PWY-7857	CJF59_13710
CJF59_13760	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CJF59_13770	PWY-3341	L-proline biosynthesis III
CJF59_13770	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJF59_13775	PWY-5381	pyridine nucleotide cycling (plants)
CJF59_13775	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJF59_13775	PWY-7761	CJF59_13775
CJF59_13800	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJF59_13805	PWY-5101	L-isoleucine biosynthesis II
CJF59_13805	PWY-5103	L-isoleucine biosynthesis III
CJF59_13805	PWY-5104	L-isoleucine biosynthesis IV
CJF59_13805	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJF59_13805	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJF59_13805	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJF59_13805	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_13840	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJF59_13840	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJF59_13840	PWY-7953	CJF59_13840
CJF59_13870	PWY-5129	sphingolipid biosynthesis (plants)
CJF59_13870	PWY-7836	CJF59_13870
CJF59_13870	PWY-7838	CJF59_13870
CJF59_13870	PWY-7839	CJF59_13870
CJF59_13870	PWY-7841	CJF59_13870
CJF59_13920	PWY-7560	methylerythritol phosphate pathway II
CJF59_14035	PWY-6902	chitin degradation II
CJF59_14035	PWY-7822	CJF59_14035
CJF59_14035	PWY-7883	CJF59_14035
CJF59_14085	PWY-5913	TCA cycle VI (obligate autotrophs)
CJF59_14085	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CJF59_14085	PWY-6638	sulfolactate degradation III
CJF59_14085	PWY-6642	(<i>R</i>)-cysteate degradation
CJF59_14085	PWY-6643	coenzyme M biosynthesis II
CJF59_14085	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJF59_14085	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJF59_14085	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJF59_14100	PWY-5667	CDP-diacylglycerol biosynthesis I
CJF59_14100	PWY-5981	CDP-diacylglycerol biosynthesis III
CJF59_14100	PWY-7902	CJF59_14100
CJF59_14135	PWY-6967	methylamine degradation I
CJF59_14150	PWY-6967	methylamine degradation I
CJF59_14570	PWY-5663	tetrahydrobiopterin biosynthesis I
CJF59_14570	PWY-5664	tetrahydrobiopterin biosynthesis II
CJF59_14570	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJF59_14570	PWY-6703	preQ<sub>0</sub> biosynthesis
CJF59_14570	PWY-6983	tetrahydrobiopterin biosynthesis III
CJF59_14570	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJF59_14570	PWY-7852	CJF59_14570
CJF59_14660	PWY-6695	oxalate degradation II
CJF59_14665	PWY-6695	oxalate degradation II
CJF59_14665	PWY-6696	oxalate degradation III
CJF59_14665	PWY-7985	CJF59_14665
CJF59_14795	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJF59_14805	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CJF59_14805	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJF59_14805	PWY-5057	L-valine degradation II
CJF59_14805	PWY-5076	L-leucine degradation III
CJF59_14805	PWY-5078	L-isoleucine degradation II
CJF59_14805	PWY-5079	L-phenylalanine degradation III
CJF59_14805	PWY-5082	L-methionine degradation III
CJF59_14805	PWY-5480	pyruvate fermentation to ethanol I
CJF59_14805	PWY-5486	pyruvate fermentation to ethanol II
CJF59_14805	PWY-5751	phenylethanol biosynthesis
CJF59_14805	PWY-6313	serotonin degradation
CJF59_14805	PWY-6333	acetaldehyde biosynthesis I
CJF59_14805	PWY-6342	noradrenaline and adrenaline degradation
CJF59_14805	PWY-6587	pyruvate fermentation to ethanol III
CJF59_14805	PWY-6802	salidroside biosynthesis
CJF59_14805	PWY-6871	3-methylbutanol biosynthesis
CJF59_14805	PWY-7013	L-1,2-propanediol degradation
CJF59_14805	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJF59_14805	PWY-7118	chitin degradation to ethanol
CJF59_14805	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJF59_14805	PWY-7798	CJF59_14805