locus-tag class description LNN31_00005 PF00308 Bacterial dnaA protein LNN31_00005 PF08299 Bacterial dnaA protein helix-turn-helix LNN31_00005 PF11638 DnaA N-terminal domain LNN31_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LNN31_00010 PF02767 DNA polymerase III beta subunit, central domain LNN31_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LNN31_00020 PF02463 RecF/RecN/SMC N terminal domain LNN31_00025 PF01751 Toprim domain LNN31_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_00025 PF00204 DNA gyrase B LNN31_00025 PF00986 DNA gyrase B subunit, carboxyl terminus LNN31_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller LNN31_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A LNN31_00040 PF00834 Ribulose-phosphate 3 epimerase family LNN31_00045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNN31_00050 PF01209 ubiE/COQ5 methyltransferase family LNN31_00055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNN31_00060 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_00065 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_00065 PF12911 N-terminal TM domain of oligopeptide transport permease C LNN31_00070 PF00005 ABC transporter LNN31_00070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNN31_00075 PF00005 ABC transporter LNN31_00075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNN31_00080 PF00005 ABC transporter LNN31_00080 PF00664 ABC transporter transmembrane region LNN31_00085 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_00090 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_00090 PF12911 N-terminal TM domain of oligopeptide transport permease C LNN31_00095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNN31_00100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNN31_00100 PF00005 ABC transporter LNN31_00105 PF00005 ABC transporter LNN31_00105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNN31_00110 PF01554 MatE LNN31_00115 PF01209 ubiE/COQ5 methyltransferase family LNN31_00120 PF07728 AAA domain (dynein-related subfamily) LNN31_00120 PF12102 Domain of unknown function (DUF3578) LNN31_00130 PF03466 LysR substrate binding domain LNN31_00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_00135 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_00140 PF12911 N-terminal TM domain of oligopeptide transport permease C LNN31_00140 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_00145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNN31_00150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNN31_00150 PF00005 ABC transporter LNN31_00155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNN31_00155 PF00005 ABC transporter LNN31_00165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNN31_00170 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_00175 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_00175 PF12911 N-terminal TM domain of oligopeptide transport permease C LNN31_00180 PF00005 ABC transporter LNN31_00185 PF00005 ABC transporter LNN31_00190 PF01169 Uncharacterized protein family UPF0016 LNN31_00195 PF13344 Haloacid dehalogenase-like hydrolase LNN31_00205 PF02597 ThiS family LNN31_00205 PF05690 Thiazole biosynthesis protein ThiG LNN31_00210 PF05690 Thiazole biosynthesis protein ThiG LNN31_00215 PF04055 Radical SAM superfamily LNN31_00215 PF06968 Biotin and Thiamin Synthesis associated domain LNN31_00220 PF02581 Thiamine monophosphate synthase LNN31_00225 PF03707 Bacterial signalling protein N terminal repeat LNN31_00225 PF00990 Diguanylate cyclase, GGDEF domain LNN31_00225 PF00563 EAL domain LNN31_00230 PF01872 RibD C-terminal domain LNN31_00230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNN31_00235 PF00677 Lumazine binding domain LNN31_00240 PF00925 GTP cyclohydrolase II LNN31_00240 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LNN31_00245 PF00885 6,7-dimethyl-8-ribityllumazine synthase LNN31_00255 PF01546 Peptidase family M20/M25/M40 LNN31_00260 PF08279 HTH domain LNN31_00260 PF03099 Biotin/lipoate A/B protein ligase family LNN31_00260 PF02237 Biotin protein ligase C terminal domain LNN31_00265 PF02632 BioY family LNN31_00270 PF00512 His Kinase A (phospho-acceptor) domain LNN31_00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_00275 PF00486 Transcriptional regulatory protein, C terminal LNN31_00275 PF00072 Response regulator receiver domain LNN31_00280 PF00005 ABC transporter LNN31_00295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNN31_00295 PF02817 e3 binding domain LNN31_00295 PF00364 Biotin-requiring enzyme LNN31_00300 PF04055 Radical SAM superfamily LNN31_00305 PF03099 Biotin/lipoate A/B protein ligase family LNN31_00305 PF10437 Bacterial lipoate protein ligase C-terminus LNN31_00315 PF03960 ArsC family LNN31_00345 PF02678 Pirin LNN31_00345 PF05726 Pirin C-terminal cupin domain LNN31_00380 PF01638 HxlR-like helix-turn-helix LNN31_00385 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_00390 PF02142 MGS-like domain LNN31_00400 PF09962 Uncharacterized conserved protein (DUF2196) LNN31_00425 PF01418 Helix-turn-helix domain, rpiR family LNN31_00425 PF01380 SIS domain LNN31_00430 PF08240 Alcohol dehydrogenase GroES-like domain LNN31_00430 PF00107 Zinc-binding dehydrogenase LNN31_00435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNN31_00435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNN31_00440 PF01791 DeoC/LacD family aldolase LNN31_00455 PF00005 ABC transporter LNN31_00455 PF13732 Domain of unknown function (DUF4162) LNN31_00460 PF00881 Nitroreductase family LNN31_00465 PF08448 PAS fold LNN31_00465 PF00990 Diguanylate cyclase, GGDEF domain LNN31_00470 PF00512 His Kinase A (phospho-acceptor) domain LNN31_00470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_00475 PF00072 Response regulator receiver domain LNN31_00475 PF00486 Transcriptional regulatory protein, C terminal LNN31_00515 PF01381 Helix-turn-helix LNN31_00530 PF12728 Helix-turn-helix domain LNN31_00590 PF04466 Phage terminase large subunit LNN31_00590 PF17288 Terminase RNAseH like domain LNN31_00600 PF04545 Sigma-70, region 4 LNN31_00600 PF04539 Sigma-70 region 3 LNN31_00600 PF00140 Sigma-70 factor, region 1.2 LNN31_00600 PF04542 Sigma-70 region 2 LNN31_00605 PF01381 Helix-turn-helix LNN31_00655 PF03372 Endonuclease/Exonuclease/phosphatase family LNN31_00670 PF00664 ABC transporter transmembrane region LNN31_00670 PF00005 ABC transporter LNN31_00675 PF00664 ABC transporter transmembrane region LNN31_00675 PF00005 ABC transporter LNN31_00680 PF06445 GyrI-like small molecule binding domain LNN31_00680 PF12833 Helix-turn-helix domain LNN31_00695 PF00226 DnaJ domain LNN31_00695 PF01556 DnaJ C terminal domain LNN31_00695 PF00684 DnaJ central domain LNN31_00715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_00715 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_00735 PF01381 Helix-turn-helix LNN31_00745 PF02634 FdhD/NarQ family LNN31_00755 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LNN31_00755 PF01568 Molydopterin dinucleotide binding domain LNN31_00755 PF00384 Molybdopterin oxidoreductase LNN31_00755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNN31_00755 PF00037 4Fe-4S binding domain LNN31_00760 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_00760 PF00037 4Fe-4S binding domain LNN31_00760 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNN31_00775 PF00486 Transcriptional regulatory protein, C terminal LNN31_00775 PF00072 Response regulator receiver domain LNN31_00780 PF00672 HAMP domain LNN31_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_00780 PF00512 His Kinase A (phospho-acceptor) domain LNN31_00785 PF00005 ABC transporter LNN31_00795 PF01661 Macro domain LNN31_00805 PF12833 Helix-turn-helix domain LNN31_00815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_00815 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_00820 PF02817 e3 binding domain LNN31_00820 PF00364 Biotin-requiring enzyme LNN31_00820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNN31_00825 PF02780 Transketolase, C-terminal domain LNN31_00825 PF02779 Transketolase, pyrimidine binding domain LNN31_00830 PF00676 Dehydrogenase E1 component LNN31_00835 PF02954 Bacterial regulatory protein, Fis family LNN31_00835 PF13426 PAS domain LNN31_00835 PF00158 Sigma-54 interaction domain LNN31_00850 PF17156 Gammaproteobacterial periplasmic sensor domain LNN31_00850 PF00990 Diguanylate cyclase, GGDEF domain LNN31_00855 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LNN31_00855 PF06594 Haemolysin-type calcium binding protein related domain LNN31_00860 PF01964 Radical SAM ThiC family LNN31_00865 PF01966 HD domain LNN31_00870 PF00578 AhpC/TSA family LNN31_00875 PF01593 Flavin containing amine oxidoreductase LNN31_00900 PF08240 Alcohol dehydrogenase GroES-like domain LNN31_00900 PF00107 Zinc-binding dehydrogenase LNN31_00905 PF02885 Glycosyl transferase family, helical bundle domain LNN31_00905 PF00591 Glycosyl transferase family, a/b domain LNN31_00920 PF17761 DUF1016 N-terminal domain LNN31_00920 PF06250 YhcG PDDEXK nuclease domain LNN31_00945 PF01926 50S ribosome-binding GTPase LNN31_00955 PF00258 Flavodoxin LNN31_00960 PF00909 Ammonium Transporter Family LNN31_00965 PF00543 Nitrogen regulatory protein P-II LNN31_00970 PF00120 Glutamine synthetase, catalytic domain LNN31_00970 PF18318 Glutamine synthetase C-terminal domain LNN31_00970 PF12437 Glutamine synthetase type III N terminal LNN31_00980 PF00120 Glutamine synthetase, catalytic domain LNN31_00980 PF03951 Glutamine synthetase, beta-Grasp domain LNN31_00985 PF03861 ANTAR domain LNN31_00985 PF00072 Response regulator receiver domain LNN31_00990 PF00709 Adenylosuccinate synthetase LNN31_00995 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LNN31_00995 PF00117 Glutamine amidotransferase class-I LNN31_01000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNN31_01000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LNN31_01000 PF02142 MGS-like domain LNN31_01005 PF00360 Phytochrome region LNN31_01005 PF01590 GAF domain LNN31_01005 PF00990 Diguanylate cyclase, GGDEF domain LNN31_01005 PF00563 EAL domain LNN31_01010 PF00437 Type II/IV secretion system protein LNN31_01015 PF00437 Type II/IV secretion system protein LNN31_01045 PF06750 Bacterial Peptidase A24 N-terminal domain LNN31_01045 PF01478 Type IV leader peptidase family LNN31_01050 PF00482 Type II secretion system (T2SS), protein F LNN31_01080 PF07963 Prokaryotic N-terminal methylation motif LNN31_01080 PF08334 Type II secretion system (T2SS), protein G LNN31_01085 PF13476 AAA domain LNN31_01085 PF02463 RecF/RecN/SMC N terminal domain LNN31_01095 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LNN31_01095 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LNN31_01095 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LNN31_01100 PF03481 Putative GTP-binding controlling metal-binding LNN31_01100 PF01300 Telomere recombination LNN31_01105 PF02502 Ribose/Galactose Isomerase LNN31_01120 PF00119 ATP synthase A chain LNN31_01125 PF00137 ATP synthase subunit C LNN31_01130 PF00137 ATP synthase subunit C LNN31_01135 PF00137 ATP synthase subunit C LNN31_01145 PF00213 ATP synthase delta (OSCP) subunit LNN31_01150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNN31_01150 PF00306 ATP synthase alpha/beta chain, C terminal domain LNN31_01150 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNN31_01155 PF00231 ATP synthase LNN31_01160 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNN31_01160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNN31_01165 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LNN31_01165 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LNN31_01170 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNN31_01170 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNN31_01170 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNN31_01175 PF00483 Nucleotidyl transferase LNN31_01180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNN31_01180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNN31_01180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNN31_01180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNN31_01185 PF03816 Cell envelope-related transcriptional attenuator domain LNN31_01190 PF04321 RmlD substrate binding domain LNN31_01195 PF00483 Nucleotidyl transferase LNN31_01200 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LNN31_01205 PF16363 GDP-mannose 4,6 dehydratase LNN31_01210 PF01061 ABC-2 type transporter LNN31_01215 PF00005 ABC transporter LNN31_01215 PF08239 Bacterial SH3 domain LNN31_01220 PF00535 Glycosyl transferase family 2 LNN31_01225 PF01520 N-acetylmuramoyl-L-alanine amidase LNN31_01240 PF00535 Glycosyl transferase family 2 LNN31_01240 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LNN31_01245 PF00535 Glycosyl transferase family 2 LNN31_01245 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LNN31_01250 PF02397 Bacterial sugar transferase LNN31_01290 PF03816 Cell envelope-related transcriptional attenuator domain LNN31_01305 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNN31_01310 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_01315 PF00005 ABC transporter LNN31_01340 PF00005 ABC transporter LNN31_01345 PF12704 MacB-like periplasmic core domain LNN31_01345 PF00005 ABC transporter LNN31_01345 PF02687 FtsX-like permease family LNN31_01350 PF00072 Response regulator receiver domain LNN31_01350 PF00486 Transcriptional regulatory protein, C terminal LNN31_01355 PF00672 HAMP domain LNN31_01355 PF00512 His Kinase A (phospho-acceptor) domain LNN31_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_01360 PF01966 HD domain LNN31_01360 PF00672 HAMP domain LNN31_01365 PF00664 ABC transporter transmembrane region LNN31_01365 PF00005 ABC transporter LNN31_01370 PF00664 ABC transporter transmembrane region LNN31_01370 PF00005 ABC transporter LNN31_01380 PF03591 AzlC protein LNN31_01385 PF05437 Branched-chain amino acid transport protein (AzlD) LNN31_01395 PF01638 HxlR-like helix-turn-helix LNN31_01405 PF18389 TrmO C-terminal domain LNN31_01405 PF01980 tRNA-methyltransferase O LNN31_01410 PF02390 Putative methyltransferase LNN31_01415 PF12848 ABC transporter LNN31_01415 PF16326 ABC transporter C-terminal domain LNN31_01415 PF00005 ABC transporter LNN31_01430 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LNN31_01440 PF00288 GHMP kinases N terminal domain LNN31_01440 PF08544 GHMP kinases C terminal LNN31_01445 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_01445 PF14821 Threonine synthase N terminus LNN31_01450 PF01842 ACT domain LNN31_01450 PF03447 Homoserine dehydrogenase, NAD binding domain LNN31_01450 PF00742 Homoserine dehydrogenase LNN31_01455 PF00696 Amino acid kinase family LNN31_01455 PF13840 ACT domain LNN31_01460 PF02386 Cation transport protein LNN31_01465 PF02254 TrkA-N domain LNN31_01465 PF02080 TrkA-C domain LNN31_01470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LNN31_01470 PF00437 Type II/IV secretion system protein LNN31_01475 PF00482 Type II secretion system (T2SS), protein F LNN31_01485 PF00753 Metallo-beta-lactamase superfamily LNN31_01485 PF00258 Flavodoxin LNN31_01485 PF00301 Rubredoxin LNN31_01500 PF00072 Response regulator receiver domain LNN31_01500 PF00486 Transcriptional regulatory protein, C terminal LNN31_01505 PF00512 His Kinase A (phospho-acceptor) domain LNN31_01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_01505 PF00672 HAMP domain LNN31_01510 PF00465 Iron-containing alcohol dehydrogenase LNN31_01515 PF13361 UvrD-like helicase C-terminal domain LNN31_01515 PF00580 UvrD/REP helicase N-terminal domain LNN31_01520 PF01653 NAD-dependent DNA ligase adenylation domain LNN31_01520 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LNN31_01520 PF12826 Helix-hairpin-helix motif LNN31_01520 PF03120 NAD-dependent DNA ligase OB-fold domain LNN31_01520 PF00533 BRCA1 C Terminus (BRCT) domain LNN31_01525 PF02686 Glu-tRNAGln amidotransferase C subunit LNN31_01530 PF01425 Amidase LNN31_01535 PF02934 GatB/GatE catalytic domain LNN31_01535 PF02637 GatB domain LNN31_01540 PF01138 3' exoribonuclease family, domain 1 LNN31_01540 PF03725 3' exoribonuclease family, domain 2 LNN31_01545 PF01725 Ham1 family LNN31_01555 PF00005 ABC transporter LNN31_01560 PF01061 ABC-2 type transporter LNN31_01590 PF00561 alpha/beta hydrolase fold LNN31_01590 PF08386 TAP-like protein LNN31_01595 PF01625 Peptide methionine sulfoxide reductase LNN31_01600 PF03733 Inner membrane component domain LNN31_01605 PF00005 ABC transporter LNN31_01605 PF09383 NIL domain LNN31_01610 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_01615 PF03180 NLPA lipoprotein LNN31_01620 PF01235 Sodium:alanine symporter family LNN31_01630 PF00072 Response regulator receiver domain LNN31_01630 PF00486 Transcriptional regulatory protein, C terminal LNN31_01635 PF00672 HAMP domain LNN31_01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_01635 PF18698 Histidine kinase sensor domain LNN31_01635 PF00512 His Kinase A (phospho-acceptor) domain LNN31_01635 PF00989 PAS fold LNN31_01640 PF02277 Phosphoribosyltransferase LNN31_01650 PF00005 ABC transporter LNN31_01655 PF00501 AMP-binding enzyme LNN31_01655 PF14535 AMP-binding enzyme C-terminal domain LNN31_01670 PF00072 Response regulator receiver domain LNN31_01670 PF00486 Transcriptional regulatory protein, C terminal LNN31_01675 PF00672 HAMP domain LNN31_01675 PF00512 His Kinase A (phospho-acceptor) domain LNN31_01675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_01675 PF13426 PAS domain LNN31_01680 PF00455 DeoR C terminal sensor domain LNN31_01680 PF08220 DeoR-like helix-turn-helix domain LNN31_01685 PF00294 pfkB family carbohydrate kinase LNN31_01690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNN31_01690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNN31_01710 PF12822 ECF transporter, substrate-specific component LNN31_01730 PF00343 Carbohydrate phosphorylase LNN31_01735 PF02903 Alpha amylase, N-terminal ig-like domain LNN31_01735 PF00128 Alpha amylase, catalytic domain LNN31_01740 PF00534 Glycosyl transferases group 1 LNN31_01740 PF08323 Starch synthase catalytic domain LNN31_01745 PF00483 Nucleotidyl transferase LNN31_01750 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_01750 PF00483 Nucleotidyl transferase LNN31_01755 PF00343 Carbohydrate phosphorylase LNN31_01760 PF02806 Alpha amylase, C-terminal all-beta domain LNN31_01760 PF00128 Alpha amylase, catalytic domain LNN31_01760 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNN31_01775 PF00330 Aconitase family (aconitate hydratase) LNN31_01785 PF02645 Uncharacterised protein, DegV family COG1307 LNN31_01790 PF17674 HHH domain LNN31_01790 PF00575 S1 RNA binding domain LNN31_01790 PF09371 Tex-like protein N-terminal domain LNN31_01790 PF16921 Tex protein YqgF-like domain LNN31_01795 PF02559 CarD-like/TRCF domain LNN31_01805 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LNN31_01805 PF17126 RsmF rRNA methyltransferase first C-terminal domain LNN31_01805 PF01189 16S rRNA methyltransferase RsmB/F LNN31_01815 PF04463 Protein of unknown function (DUF523) LNN31_01820 PF01820 D-ala D-ala ligase N-terminus LNN31_01820 PF07478 D-ala D-ala ligase C-terminus LNN31_01830 PF05746 DALR anticodon binding domain LNN31_01830 PF00750 tRNA synthetases class I (R) LNN31_01830 PF03485 Arginyl tRNA synthetase N terminal domain LNN31_01835 PF00899 ThiF family LNN31_01840 PF02542 YgbB family LNN31_01845 PF01048 Phosphorylase superfamily LNN31_01850 PF00842 Alanine racemase, C-terminal domain LNN31_01850 PF01168 Alanine racemase, N-terminal domain LNN31_01855 PF00456 Transketolase, thiamine diphosphate binding domain LNN31_01860 PF02780 Transketolase, C-terminal domain LNN31_01860 PF02779 Transketolase, pyrimidine binding domain LNN31_01875 PF00005 ABC transporter LNN31_01880 PF02361 Cobalt transport protein LNN31_01890 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LNN31_01895 PF01968 Hydantoinase/oxoprolinase LNN31_01895 PF05378 Hydantoinase/oxoprolinase N-terminal region LNN31_01905 PF02441 Flavoprotein LNN31_01935 PF00561 alpha/beta hydrolase fold LNN31_01945 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNN31_01960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNN31_01965 PF00092 von Willebrand factor type A domain LNN31_01980 PF13280 WYL domain LNN31_01980 PF08279 HTH domain LNN31_01995 PF00005 ABC transporter LNN31_02010 PF00486 Transcriptional regulatory protein, C terminal LNN31_02010 PF00072 Response regulator receiver domain LNN31_02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_02015 PF00512 His Kinase A (phospho-acceptor) domain LNN31_02025 PF01597 Glycine cleavage H-protein LNN31_02030 PF01571 Aminomethyltransferase folate-binding domain LNN31_02030 PF08669 Glycine cleavage T-protein C-terminal barrel domain LNN31_02035 PF02347 Glycine cleavage system P-protein LNN31_02040 PF02347 Glycine cleavage system P-protein LNN31_02045 PF01842 ACT domain LNN31_02045 PF03315 Serine dehydratase beta chain LNN31_02050 PF03313 Serine dehydratase alpha chain LNN31_02055 PF00682 HMGL-like LNN31_02055 PF08502 LeuA allosteric (dimerisation) domain LNN31_02060 PF01037 Lrp/AsnC ligand binding domain LNN31_02065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LNN31_02065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LNN31_02075 PF00440 Bacterial regulatory proteins, tetR family LNN31_02080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_02080 PF02203 Tar ligand binding domain homologue LNN31_02080 PF00672 HAMP domain LNN31_02090 PF07690 Major Facilitator Superfamily LNN31_02095 PF08448 PAS fold LNN31_02095 PF00990 Diguanylate cyclase, GGDEF domain LNN31_02100 PF13458 Periplasmic binding protein LNN31_02105 PF06827 Zinc finger found in FPG and IleRS LNN31_02105 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LNN31_02105 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LNN31_02110 PF00440 Bacterial regulatory proteins, tetR family LNN31_02110 PF08361 MAATS-type transcriptional repressor, C-terminal region LNN31_02115 PF00005 ABC transporter LNN31_02125 PF01047 MarR family LNN31_02130 PF00202 Aminotransferase class-III LNN31_02135 PF01894 Uncharacterised protein family UPF0047 LNN31_02145 PF00857 Isochorismatase family LNN31_02150 PF01638 HxlR-like helix-turn-helix LNN31_02175 PF13280 WYL domain LNN31_02175 PF08279 HTH domain LNN31_02195 PF04993 TfoX N-terminal domain LNN31_02205 PF00462 Glutaredoxin LNN31_02230 PF00248 Aldo/keto reductase family LNN31_02245 PF18665 Tetracyclin repressor-like, C-terminal domain LNN31_02245 PF00440 Bacterial regulatory proteins, tetR family LNN31_02255 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LNN31_02285 PF01048 Phosphorylase superfamily LNN31_02290 PF01008 Initiation factor 2 subunit family LNN31_02300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNN31_02310 PF00535 Glycosyl transferase family 2 LNN31_02320 PF01261 Xylose isomerase-like TIM barrel LNN31_02325 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family LNN31_02330 PF00148 Nitrogenase component 1 type Oxidoreductase LNN31_02340 PF01497 Periplasmic binding protein LNN31_02345 PF01032 FecCD transport family LNN31_02350 PF00005 ABC transporter LNN31_02355 PF01209 ubiE/COQ5 methyltransferase family LNN31_02365 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LNN31_02370 PF02901 Pyruvate formate lyase-like LNN31_02370 PF01228 Glycine radical LNN31_02375 PF04055 Radical SAM superfamily LNN31_02375 PF13187 4Fe-4S dicluster domain LNN31_02380 PF06580 Histidine kinase LNN31_02380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_02380 PF07694 5TMR of 5TMR-LYT LNN31_02385 PF00072 Response regulator receiver domain LNN31_02385 PF04397 LytTr DNA-binding domain LNN31_02390 PF02772 S-adenosylmethionine synthetase, central domain LNN31_02390 PF00438 S-adenosylmethionine synthetase, N-terminal domain LNN31_02390 PF02773 S-adenosylmethionine synthetase, C-terminal domain LNN31_02455 PF00005 ABC transporter LNN31_02475 PF01497 Periplasmic binding protein LNN31_02480 PF01032 FecCD transport family LNN31_02485 PF00005 ABC transporter LNN31_02490 PF07685 CobB/CobQ-like glutamine amidotransferase domain LNN31_02490 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNN31_02495 PF00288 GHMP kinases N terminal domain LNN31_02500 PF02570 Precorrin-8X methylmutase LNN31_02505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNN31_02510 PF01888 CbiD LNN31_02520 PF05175 Methyltransferase small domain LNN31_02525 PF00117 Glutamine amidotransferase class-I LNN31_02530 PF02633 Creatinine amidohydrolase LNN31_02545 PF00072 Response regulator receiver domain LNN31_02545 PF00486 Transcriptional regulatory protein, C terminal LNN31_02550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_02555 PF00005 ABC transporter LNN31_02560 PF02687 FtsX-like permease family LNN31_02565 PF00563 EAL domain LNN31_02565 PF00990 Diguanylate cyclase, GGDEF domain LNN31_02565 PF03707 Bacterial signalling protein N terminal repeat LNN31_02570 PF01891 Cobalt uptake substrate-specific transmembrane region LNN31_02580 PF02361 Cobalt transport protein LNN31_02585 PF00005 ABC transporter LNN31_02590 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LNN31_02590 PF01488 Shikimate / quinate 5-dehydrogenase LNN31_02590 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LNN31_02595 PF10414 Sirohaem synthase dimerisation region LNN31_02595 PF14824 Sirohaem biosynthesis protein central LNN31_02595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNN31_02600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNN31_02600 PF02602 Uroporphyrinogen-III synthase HemD LNN31_02605 PF00490 Delta-aminolevulinic acid dehydratase LNN31_02610 PF00202 Aminotransferase class-III LNN31_02615 PF06180 Cobalt chelatase (CbiK) LNN31_02620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNN31_02625 PF11760 Cobalamin synthesis G N-terminal LNN31_02625 PF01890 Cobalamin synthesis G C-terminus LNN31_02625 PF11761 Cobalamin biosynthesis central region LNN31_02630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNN31_02635 PF02571 Precorrin-6x reductase CbiJ/CobK LNN31_02640 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNN31_02640 PF07685 CobB/CobQ-like glutamine amidotransferase domain LNN31_02645 PF03186 CobD/Cbib protein LNN31_02650 PF00155 Aminotransferase class I and II LNN31_02655 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LNN31_02665 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_02665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_02690 PF02687 FtsX-like permease family LNN31_02690 PF00005 ABC transporter LNN31_02690 PF12704 MacB-like periplasmic core domain LNN31_02695 PF00005 ABC transporter LNN31_02715 PF02810 SEC-C motif LNN31_02715 PF07517 SecA DEAD-like domain LNN31_02715 PF01043 SecA preprotein cross-linking domain LNN31_02715 PF07516 SecA Wing and Scaffold domain LNN31_02730 PF01790 Prolipoprotein diacylglyceryl transferase LNN31_02740 PF08245 Mur ligase middle domain LNN31_02740 PF01225 Mur ligase family, catalytic domain LNN31_02740 PF02875 Mur ligase family, glutamate ligase domain LNN31_02745 PF00156 Phosphoribosyl transferase domain LNN31_02745 PF09182 Bacterial purine repressor, N-terminal LNN31_02750 PF04026 SpoVG LNN31_02755 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_02755 PF00483 Nucleotidyl transferase LNN31_02760 PF14572 Phosphoribosyl synthetase-associated domain LNN31_02760 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LNN31_02765 PF01195 Peptidyl-tRNA hydrolase LNN31_02770 PF17757 UvrB interaction domain LNN31_02770 PF00271 Helicase conserved C-terminal domain LNN31_02770 PF03461 TRCF domain LNN31_02770 PF02559 CarD-like/TRCF domain LNN31_02770 PF00270 DEAD/DEAH box helicase LNN31_02780 PF01943 Polysaccharide biosynthesis protein LNN31_02780 PF14667 Polysaccharide biosynthesis C-terminal domain LNN31_02785 PF03819 MazG nucleotide pyrophosphohydrolase domain LNN31_02785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNN31_02790 PF00216 Bacterial DNA-binding protein LNN31_02795 PF01479 S4 domain LNN31_02805 PF01761 3-dehydroquinate synthase LNN31_02805 PF02541 Ppx/GppA phosphatase family LNN31_02835 PF01171 PP-loop family LNN31_02835 PF11734 TilS substrate C-terminal domain LNN31_02840 PF00156 Phosphoribosyl transferase domain LNN31_02845 PF00004 ATPase family associated with various cellular activities (AAA) LNN31_02845 PF17862 AAA+ lid domain LNN31_02845 PF06480 FtsH Extracellular LNN31_02845 PF01434 Peptidase family M41 LNN31_02855 PF03309 Type III pantothenate kinase LNN31_02860 PF01207 Dihydrouridine synthase (Dus) LNN31_02865 PF02875 Mur ligase family, glutamate ligase domain LNN31_02865 PF08245 Mur ligase middle domain LNN31_02870 PF01812 5-formyltetrahydrofolate cyclo-ligase family LNN31_02880 PF03006 Haemolysin-III related LNN31_02885 PF00117 Glutamine amidotransferase class-I LNN31_02885 PF06418 CTP synthase N-terminus LNN31_02890 PF00795 Carbon-nitrogen hydrolase LNN31_02890 PF02540 NAD synthase LNN31_02895 PF01381 Helix-turn-helix LNN31_02900 PF00270 DEAD/DEAH box helicase LNN31_02900 PF00271 Helicase conserved C-terminal domain LNN31_02905 PF01554 MatE LNN31_02910 PF00636 Ribonuclease III domain LNN31_02915 PF09190 DALR domain LNN31_02915 PF01406 tRNA synthetases class I (C) catalytic domain LNN31_02920 PF01371 Trp repressor protein LNN31_02925 PF00155 Aminotransferase class I and II LNN31_02935 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LNN31_02940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LNN31_02945 PF00676 Dehydrogenase E1 component LNN31_02950 PF00364 Biotin-requiring enzyme LNN31_02950 PF02780 Transketolase, C-terminal domain LNN31_02950 PF02779 Transketolase, pyrimidine binding domain LNN31_02955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNN31_02955 PF02817 e3 binding domain LNN31_02955 PF00364 Biotin-requiring enzyme LNN31_02960 PF00571 CBS domain LNN31_02960 PF00478 IMP dehydrogenase / GMP reductase domain LNN31_02965 PF00117 Glutamine amidotransferase class-I LNN31_02965 PF00958 GMP synthase C terminal domain LNN31_02965 PF02540 NAD synthase LNN31_02970 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_02970 PF00589 Phage integrase family LNN31_03060 PF17288 Terminase RNAseH like domain LNN31_03060 PF04466 Phage terminase large subunit LNN31_03075 PF04198 Putative sugar-binding domain LNN31_03085 PF03608 PTS system enzyme II sorbitol-specific factor LNN31_03090 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LNN31_03090 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LNN31_03105 PF00676 Dehydrogenase E1 component LNN31_03110 PF02780 Transketolase, C-terminal domain LNN31_03110 PF02779 Transketolase, pyrimidine binding domain LNN31_03115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNN31_03115 PF00364 Biotin-requiring enzyme LNN31_03115 PF02817 e3 binding domain LNN31_03120 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_03120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_03125 PF05524 PEP-utilising enzyme, N-terminal LNN31_03125 PF00391 PEP-utilising enzyme, mobile domain LNN31_03125 PF02896 PEP-utilising enzyme, TIM barrel domain LNN31_03130 PF00381 PTS HPr component phosphorylation site LNN31_03140 PF03949 Malic enzyme, NAD binding domain LNN31_03140 PF00390 Malic enzyme, N-terminal domain LNN31_03145 PF00230 Major intrinsic protein LNN31_03150 PF02151 UvrB/uvrC motif LNN31_03150 PF01541 GIY-YIG catalytic domain LNN31_03150 PF08459 UvrC Helix-hairpin-helix N-terminal LNN31_03170 PF00005 ABC transporter LNN31_03185 PF03928 Haem-degrading LNN31_03200 PF00293 NUDIX domain LNN31_03210 PF00892 EamA-like transporter family LNN31_03275 PF12838 4Fe-4S dicluster domain LNN31_03275 PF01568 Molydopterin dinucleotide binding domain LNN31_03275 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LNN31_03275 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LNN31_03275 PF00384 Molybdopterin oxidoreductase LNN31_03280 PF12804 MobA-like NTP transferase domain LNN31_03310 PF01487 Type I 3-dehydroquinase LNN31_03315 PF01569 PAP2 superfamily LNN31_03320 PF03167 Uracil DNA glycosylase superfamily LNN31_03325 PF00288 GHMP kinases N terminal domain LNN31_03325 PF08544 GHMP kinases C terminal LNN31_03330 PF07729 FCD domain LNN31_03330 PF00392 Bacterial regulatory proteins, gntR family LNN31_03335 PF01252 Signal peptidase (SPase) II LNN31_03340 PF01594 AI-2E family transporter LNN31_03345 PF00579 tRNA synthetases class I (W and Y) LNN31_03350 PF13393 Histidyl-tRNA synthetase LNN31_03355 PF02926 THUMP domain LNN31_03355 PF01170 Putative RNA methylase family UPF0020 LNN31_03360 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNN31_03360 PF00588 SpoU rRNA Methylase family LNN31_03370 PF04542 Sigma-70 region 2 LNN31_03370 PF08281 Sigma-70, region 4 LNN31_03385 PF00009 Elongation factor Tu GTP binding domain LNN31_03385 PF03144 Elongation factor Tu domain 2 LNN31_03385 PF03143 Elongation factor Tu C-terminal domain LNN31_03390 PF02645 Uncharacterised protein, DegV family COG1307 LNN31_03395 PF00338 Ribosomal protein S10p/S20e LNN31_03400 PF00297 Ribosomal protein L3 LNN31_03405 PF00573 Ribosomal protein L4/L1 family LNN31_03410 PF00276 Ribosomal protein L23 LNN31_03415 PF03947 Ribosomal Proteins L2, C-terminal domain LNN31_03415 PF00181 Ribosomal Proteins L2, RNA binding domain LNN31_03420 PF00203 Ribosomal protein S19 LNN31_03425 PF00237 Ribosomal protein L22p/L17e LNN31_03430 PF07650 KH domain LNN31_03430 PF00189 Ribosomal protein S3, C-terminal domain LNN31_03435 PF00252 Ribosomal protein L16p/L10e LNN31_03440 PF00831 Ribosomal L29 protein LNN31_03445 PF00366 Ribosomal protein S17 LNN31_03450 PF00238 Ribosomal protein L14p/L23e LNN31_03455 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LNN31_03455 PF00467 KOW motif LNN31_03460 PF00673 ribosomal L5P family C-terminus LNN31_03460 PF00281 Ribosomal protein L5 LNN31_03465 PF00253 Ribosomal protein S14p/S29e LNN31_03470 PF00410 Ribosomal protein S8 LNN31_03475 PF00347 Ribosomal protein L6 LNN31_03480 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LNN31_03485 PF00333 Ribosomal protein S5, N-terminal domain LNN31_03485 PF03719 Ribosomal protein S5, C-terminal domain LNN31_03490 PF00327 Ribosomal protein L30p/L7e LNN31_03495 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LNN31_03500 PF00344 SecY translocase LNN31_03505 PF05191 Adenylate kinase, active site lid LNN31_03510 PF00557 Metallopeptidase family M24 LNN31_03520 PF01176 Translation initiation factor 1A / IF-1 LNN31_03525 PF00444 Ribosomal protein L36 LNN31_03530 PF00416 Ribosomal protein S13/S18 LNN31_03535 PF00411 Ribosomal protein S11 LNN31_03540 PF00163 Ribosomal protein S4/S9 N-terminal domain LNN31_03540 PF01479 S4 domain LNN31_03545 PF01000 RNA polymerase Rpb3/RpoA insert domain LNN31_03545 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LNN31_03545 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LNN31_03550 PF01196 Ribosomal protein L17 LNN31_03555 PF00005 ABC transporter LNN31_03560 PF00005 ABC transporter LNN31_03565 PF02361 Cobalt transport protein LNN31_03570 PF01416 tRNA pseudouridine synthase LNN31_03575 PF00572 Ribosomal protein L13 LNN31_03580 PF00380 Ribosomal protein S9/S16 LNN31_03585 PF00679 Elongation factor G C-terminus LNN31_03585 PF00009 Elongation factor Tu GTP binding domain LNN31_03585 PF03144 Elongation factor Tu domain 2 LNN31_03595 PF01594 AI-2E family transporter LNN31_03625 PF02457 DisA bacterial checkpoint controller nucleotide-binding LNN31_03635 PF00266 Aminotransferase class-V LNN31_03640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNN31_03640 PF01842 ACT domain LNN31_03640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNN31_03655 PF06968 Biotin and Thiamin Synthesis associated domain LNN31_03655 PF04055 Radical SAM superfamily LNN31_03665 PF13396 Phospholipase_D-nuclease N-terminal LNN31_03665 PF13091 PLD-like domain LNN31_03670 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LNN31_03670 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LNN31_03680 PF02810 SEC-C motif LNN31_03680 PF07517 SecA DEAD-like domain LNN31_03680 PF01043 SecA preprotein cross-linking domain LNN31_03680 PF07516 SecA Wing and Scaffold domain LNN31_03705 PF02310 B12 binding domain LNN31_03705 PF02607 B12 binding domain LNN31_03705 PF02965 Vitamin B12 dependent methionine synthase, activation domain LNN31_03705 PF00809 Pterin binding enzyme LNN31_03705 PF02574 Homocysteine S-methyltransferase LNN31_03710 PF13382 Adenine deaminase C-terminal domain LNN31_03710 PF01979 Amidohydrolase family LNN31_03715 PF00301 Rubredoxin LNN31_03715 PF01613 Flavin reductase like domain LNN31_03720 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LNN31_03725 PF17938 Tetracyclin repressor-like, C-terminal domain LNN31_03725 PF00440 Bacterial regulatory proteins, tetR family LNN31_03730 PF07859 alpha/beta hydrolase fold LNN31_03735 PF00158 Sigma-54 interaction domain LNN31_03735 PF13426 PAS domain LNN31_03735 PF02954 Bacterial regulatory protein, Fis family LNN31_03740 PF06253 Trimethylamine methyltransferase (MTTB) LNN31_03745 PF06253 Trimethylamine methyltransferase (MTTB) LNN31_03755 PF02028 BCCT, betaine/carnitine/choline family transporter LNN31_03760 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LNN31_03760 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LNN31_03765 PF02548 Ketopantoate hydroxymethyltransferase LNN31_03770 PF02607 B12 binding domain LNN31_03770 PF02310 B12 binding domain LNN31_03785 PF02607 B12 binding domain LNN31_03785 PF02310 B12 binding domain LNN31_03795 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNN31_03795 PF07683 Cobalamin synthesis protein cobW C-terminal domain LNN31_03805 PF13520 Amino acid permease LNN31_03810 PF00990 Diguanylate cyclase, GGDEF domain LNN31_03810 PF08447 PAS fold LNN31_03810 PF00563 EAL domain LNN31_03810 PF08448 PAS fold LNN31_03815 PF02780 Transketolase, C-terminal domain LNN31_03815 PF02779 Transketolase, pyrimidine binding domain LNN31_03815 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LNN31_03820 PF12728 Helix-turn-helix domain LNN31_03820 PF12727 PBP superfamily domain LNN31_03830 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_03835 PF00005 ABC transporter LNN31_03835 PF08402 TOBE domain LNN31_03845 PF02445 Quinolinate synthetase A protein LNN31_03850 PF00890 FAD binding domain LNN31_03855 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LNN31_03855 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LNN31_03865 PF04055 Radical SAM superfamily LNN31_03875 PF02954 Bacterial regulatory protein, Fis family LNN31_03875 PF13426 PAS domain LNN31_03875 PF00158 Sigma-54 interaction domain LNN31_03880 PF01910 Thiamine-binding protein LNN31_03885 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_03890 PF09084 NMT1/THI5 like LNN31_03895 PF00005 ABC transporter LNN31_03910 PF00676 Dehydrogenase E1 component LNN31_03915 PF02780 Transketolase, C-terminal domain LNN31_03915 PF02779 Transketolase, pyrimidine binding domain LNN31_03920 PF01513 ATP-NAD kinase LNN31_03925 PF00364 Biotin-requiring enzyme LNN31_03925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNN31_03925 PF02817 e3 binding domain LNN31_03930 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_03930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_03935 PF02261 Aspartate decarboxylase LNN31_03940 PF02569 Pantoate-beta-alanine ligase LNN31_03945 PF02548 Ketopantoate hydroxymethyltransferase LNN31_03955 PF01544 CorA-like Mg2+ transporter protein LNN31_03970 PF00860 Permease family LNN31_03975 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LNN31_03975 PF01488 Shikimate / quinate 5-dehydrogenase LNN31_03975 PF08501 Shikimate dehydrogenase substrate binding domain LNN31_03980 PF01202 Shikimate kinase LNN31_04000 PF03063 Prismane/CO dehydrogenase family LNN31_04015 PF13514 AAA domain LNN31_04030 PF04060 Putative Fe-S cluster LNN31_04050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_04050 PF00512 His Kinase A (phospho-acceptor) domain LNN31_04060 PF00037 4Fe-4S binding domain LNN31_04060 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_04060 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNN31_04065 PF00037 4Fe-4S binding domain LNN31_04065 PF02906 Iron only hydrogenase large subunit, C-terminal domain LNN31_04065 PF02256 Iron hydrogenase small subunit LNN31_04065 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LNN31_04070 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LNN31_04070 PF13538 UvrD-like helicase C-terminal domain LNN31_04070 PF14490 Helix-hairpin-helix containing domain LNN31_04075 PF00156 Phosphoribosyl transferase domain LNN31_04080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LNN31_04080 PF01565 FAD binding domain LNN31_04085 PF02811 PHP domain LNN31_04090 PF03668 P-loop ATPase protein family LNN31_04095 PF01933 Uncharacterised protein family UPF0052 LNN31_04100 PF02650 WhiA C-terminal HTH domain LNN31_04100 PF10298 WhiA N-terminal LAGLIDADG-like domain LNN31_04100 PF14527 WhiA LAGLIDADG-like domain LNN31_04105 PF05105 Bacteriophage holin family LNN31_04130 PF02743 Cache domain LNN31_04130 PF00672 HAMP domain LNN31_04130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_04135 PF04542 Sigma-70 region 2 LNN31_04135 PF08281 Sigma-70, region 4 LNN31_04170 PF01695 IstB-like ATP binding protein LNN31_04180 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_04180 PF00589 Phage integrase family LNN31_04185 PF04002 RadC-like JAB domain LNN31_04195 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_04195 PF00589 Phage integrase family LNN31_04210 PF01695 IstB-like ATP binding protein LNN31_04240 PF05973 Phage derived protein Gp49-like (DUF891) LNN31_04245 PF00665 Integrase core domain LNN31_04245 PF13333 Integrase core domain LNN31_04245 PF13276 HTH-like domain LNN31_04260 PF01381 Helix-turn-helix LNN31_04315 PF10460 Peptidase M30 LNN31_04325 PF01695 IstB-like ATP binding protein LNN31_04360 PF00171 Aldehyde dehydrogenase family LNN31_04365 PF13350 Tyrosine phosphatase family LNN31_04370 PF06969 HemN C-terminal domain LNN31_04370 PF04055 Radical SAM superfamily LNN31_04375 PF01628 HrcA protein C terminal domain LNN31_04380 PF01025 GrpE LNN31_04385 PF00012 Hsp70 protein LNN31_04390 PF00684 DnaJ central domain LNN31_04390 PF00226 DnaJ domain LNN31_04390 PF01556 DnaJ C terminal domain LNN31_04395 PF02082 Transcriptional regulator LNN31_04405 PF01636 Phosphotransferase enzyme family LNN31_04410 PF10662 Ethanolamine utilisation - propanediol utilisation LNN31_04415 PF00936 BMC domain LNN31_04425 PF04452 RNA methyltransferase LNN31_04430 PF00919 Uncharacterized protein family UPF0004 LNN31_04430 PF01938 TRAM domain LNN31_04430 PF04055 Radical SAM superfamily LNN31_04435 PF01230 HIT domain LNN31_04440 PF01165 Ribosomal protein S21 LNN31_04445 PF09424 Yqey-like protein LNN31_04475 PF01551 Peptidase family M23 LNN31_04475 PF08460 Bacterial SH3 domain LNN31_04485 PF02631 RecX family LNN31_04495 PF00155 Aminotransferase class I and II LNN31_04495 PF00392 Bacterial regulatory proteins, gntR family LNN31_04500 PF07963 Prokaryotic N-terminal methylation motif LNN31_04500 PF08334 Type II secretion system (T2SS), protein G LNN31_04505 PF07963 Prokaryotic N-terminal methylation motif LNN31_04505 PF12019 Type II transport protein GspH LNN31_04545 PF01047 MarR family LNN31_04550 PF02608 ABC transporter substrate-binding protein PnrA-like LNN31_04555 PF00005 ABC transporter LNN31_04560 PF02653 Branched-chain amino acid transport system / permease component LNN31_04565 PF02653 Branched-chain amino acid transport system / permease component LNN31_04570 PF01761 3-dehydroquinate synthase LNN31_04575 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNN31_04580 PF01264 Chorismate synthase LNN31_04595 PF02436 Conserved carboxylase domain LNN31_04595 PF02785 Biotin carboxylase C-terminal domain LNN31_04595 PF00289 Biotin carboxylase, N-terminal domain LNN31_04595 PF00364 Biotin-requiring enzyme LNN31_04595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNN31_04595 PF00682 HMGL-like LNN31_04605 PF01740 STAS domain LNN31_04620 PF00005 ABC transporter LNN31_04620 PF00664 ABC transporter transmembrane region LNN31_04625 PF00005 ABC transporter LNN31_04625 PF00664 ABC transporter transmembrane region LNN31_04630 PF18030 RimK PreATP-grasp domain LNN31_04630 PF08443 RimK-like ATP-grasp domain LNN31_04635 PF08443 RimK-like ATP-grasp domain LNN31_04635 PF18030 RimK PreATP-grasp domain LNN31_04645 PF00990 Diguanylate cyclase, GGDEF domain LNN31_04645 PF01590 GAF domain LNN31_04645 PF00563 EAL domain LNN31_04645 PF00360 Phytochrome region LNN31_04670 PF02743 Cache domain LNN31_04670 PF00672 HAMP domain LNN31_04670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_04670 PF06580 Histidine kinase LNN31_04675 PF00072 Response regulator receiver domain LNN31_04680 PF00936 BMC domain LNN31_04685 PF00936 BMC domain LNN31_04690 PF02286 Dehydratase large subunit LNN31_04695 PF02288 Dehydratase medium subunit LNN31_04700 PF02287 Dehydratase small subunit LNN31_04705 PF08841 Diol dehydratase reactivase ATPase-like domain LNN31_04705 PF18427 DD-reactivating factor swiveling domain LNN31_04720 PF06130 Phosphate propanoyltransferase LNN31_04735 PF03319 Ethanolamine utilisation protein EutN/carboxysome LNN31_04740 PF01923 Cobalamin adenosyltransferase LNN31_04745 PF03928 Haem-degrading LNN31_04750 PF00171 Aldehyde dehydrogenase family LNN31_04755 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNN31_04755 PF12838 4Fe-4S dicluster domain LNN31_04755 PF13375 RnfC Barrel sandwich hybrid domain LNN31_04755 PF10531 SLBB domain LNN31_04775 PF12169 DNA polymerase III subunits gamma and tau domain III LNN31_04780 PF02575 YbaB/EbfC DNA-binding family LNN31_04785 PF02132 RecR protein LNN31_04785 PF00633 Helix-hairpin-helix motif LNN31_04785 PF13662 Toprim domain LNN31_04790 PF05524 PEP-utilising enzyme, N-terminal LNN31_04790 PF02896 PEP-utilising enzyme, TIM barrel domain LNN31_04790 PF00391 PEP-utilising enzyme, mobile domain LNN31_04795 PF00381 PTS HPr component phosphorylation site LNN31_04810 PF01740 STAS domain LNN31_04815 PF13581 Histidine kinase-like ATPase domain LNN31_04820 PF04542 Sigma-70 region 2 LNN31_04820 PF04539 Sigma-70 region 3 LNN31_04820 PF04545 Sigma-70, region 4 LNN31_04825 PF00679 Elongation factor G C-terminus LNN31_04825 PF14492 Elongation Factor G, domain II LNN31_04825 PF03764 Elongation factor G, domain IV LNN31_04825 PF00009 Elongation factor Tu GTP binding domain LNN31_04825 PF03144 Elongation factor Tu domain 2 LNN31_04830 PF00156 Phosphoribosyl transferase domain LNN31_04835 PF01177 Asp/Glu/Hydantoin racemase LNN31_04840 PF00579 tRNA synthetases class I (W and Y) LNN31_04845 PF12705 PD-(D/E)XK nuclease superfamily LNN31_04850 PF12705 PD-(D/E)XK nuclease superfamily LNN31_04850 PF00580 UvrD/REP helicase N-terminal domain LNN31_04850 PF13361 UvrD-like helicase C-terminal domain LNN31_04860 PF00082 Subtilase family LNN31_04880 PF08402 TOBE domain LNN31_04880 PF00005 ABC transporter LNN31_04885 PF01042 Endoribonuclease L-PSP LNN31_04895 PF01255 Putative undecaprenyl diphosphate synthase LNN31_04905 PF17820 PDZ domain LNN31_04905 PF02163 Peptidase family M50 LNN31_04910 PF04551 GcpE protein LNN31_04915 PF00929 Exonuclease LNN31_04915 PF11490 DNA polymerase III polC-type N-terminus II LNN31_04915 PF07733 Bacterial DNA polymerase III alpha NTPase domain LNN31_04915 PF02811 PHP domain LNN31_04915 PF14579 Helix-hairpin-helix motif LNN31_04915 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LNN31_04930 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LNN31_04930 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LNN31_04930 PF13288 DXP reductoisomerase C-terminal domain LNN31_04935 PF00465 Iron-containing alcohol dehydrogenase LNN31_04940 PF01551 Peptidase family M23 LNN31_04940 PF01464 Transglycosylase SLT domain LNN31_04940 PF10145 Phage-related minor tail protein LNN31_04945 PF00005 ABC transporter LNN31_04950 PF18075 FtsX extracellular domain LNN31_04950 PF02687 FtsX-like permease family LNN31_04955 PF01464 Transglycosylase SLT domain LNN31_04955 PF10145 Phage-related minor tail protein LNN31_04955 PF01551 Peptidase family M23 LNN31_04960 PF17820 PDZ domain LNN31_04960 PF03572 Peptidase family S41 LNN31_04960 PF01471 Putative peptidoglycan binding domain LNN31_04965 PF00271 Helicase conserved C-terminal domain LNN31_04965 PF04851 Type III restriction enzyme, res subunit LNN31_04965 PF02151 UvrB/uvrC motif LNN31_04965 PF12344 Ultra-violet resistance protein B LNN31_04965 PF17757 UvrB interaction domain LNN31_04970 PF17755 UvrA DNA-binding domain LNN31_04970 PF17760 UvrA interaction domain LNN31_04980 PF17910 FeoB cytosolic helical domain LNN31_04980 PF02421 Ferrous iron transport protein B LNN31_04980 PF07664 Ferrous iron transport protein B C terminus LNN31_04980 PF07670 Nucleoside recognition LNN31_04990 PF00313 'Cold-shock' DNA-binding domain LNN31_05000 PF02151 UvrB/uvrC motif LNN31_05000 PF01541 GIY-YIG catalytic domain LNN31_05000 PF08459 UvrC Helix-hairpin-helix N-terminal LNN31_05005 PF07475 HPr Serine kinase C-terminal domain LNN31_05005 PF02603 HPr Serine kinase N terminus LNN31_05015 PF02645 Uncharacterised protein, DegV family COG1307 LNN31_05020 PF00472 RF-1 domain LNN31_05020 PF03462 PCRF domain LNN31_05030 PF03129 Anticodon binding domain LNN31_05030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNN31_05035 PF02690 Na+/Pi-cotransporter LNN31_05045 PF03963 Flagellar hook capping protein - N-terminal region LNN31_05055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNN31_05055 PF07559 Flagellar basal body protein FlaE LNN31_05055 PF00460 Flagella basal body rod protein LNN31_05065 PF01618 MotA/TolQ/ExbB proton channel family LNN31_05070 PF13677 Membrane MotB of proton-channel complex MotA/MotB LNN31_05070 PF00691 OmpA family LNN31_05075 PF02154 Flagellar motor switch protein FliM LNN31_05075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNN31_05080 PF04509 CheC-like family LNN31_05080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNN31_05085 PF00072 Response regulator receiver domain LNN31_05090 PF04347 Flagellar biosynthesis protein, FliO LNN31_05090 PF00813 FliP family LNN31_05095 PF00813 FliP family LNN31_05100 PF01313 Bacterial export proteins, family 3 LNN31_05105 PF01311 Bacterial export proteins, family 1 LNN31_05110 PF01312 FlhB HrpN YscU SpaS Family LNN31_05115 PF00771 FHIPEP family LNN31_05120 PF04539 Sigma-70 region 3 LNN31_05120 PF04542 Sigma-70 region 2 LNN31_05120 PF04545 Sigma-70, region 4 LNN31_05125 PF00460 Flagella basal body rod protein LNN31_05125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNN31_05130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNN31_05130 PF00460 Flagella basal body rod protein LNN31_05140 PF04509 CheC-like family LNN31_05145 PF03975 CheD chemotactic sensory transduction LNN31_05150 PF01584 CheW-like domain LNN31_05155 PF00072 Response regulator receiver domain LNN31_05155 PF01339 CheB methylesterase LNN31_05170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNN31_05170 PF00460 Flagella basal body rod protein LNN31_05175 PF00700 Bacterial flagellin C-terminal helical region LNN31_05175 PF00669 Bacterial flagellin N-terminal helical region LNN31_05215 PF13635 Domain of unknown function (DUF4143) LNN31_05215 PF13173 AAA domain LNN31_05225 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNN31_05245 PF00012 Hsp70 protein LNN31_05250 PF00226 DnaJ domain LNN31_05250 PF01556 DnaJ C terminal domain LNN31_05250 PF00684 DnaJ central domain LNN31_05255 PF01312 FlhB HrpN YscU SpaS Family LNN31_05265 PF07194 P2 response regulator binding domain LNN31_05265 PF01627 Hpt domain LNN31_05265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_05265 PF02895 Signal transducing histidine kinase, homodimeric domain LNN31_05265 PF01584 CheW-like domain LNN31_05270 PF03705 CheR methyltransferase, all-alpha domain LNN31_05270 PF01739 CheR methyltransferase, SAM binding domain LNN31_05275 PF07195 Flagellar hook-associated protein 2 C-terminus LNN31_05275 PF02465 Flagellar hook-associated protein 2 N-terminus LNN31_05275 PF07196 Flagellin hook IN motif LNN31_05290 PF00460 Flagella basal body rod protein LNN31_05295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNN31_05295 PF00460 Flagella basal body rod protein LNN31_05300 PF02049 Flagellar hook-basal body complex protein FliE LNN31_05310 PF14842 FliG N-terminal domain LNN31_05310 PF14841 FliG middle domain LNN31_05310 PF01706 FliG C-terminal domain LNN31_05320 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNN31_05320 PF18269 T3SS EscN ATPase C-terminal domain LNN31_05320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNN31_05330 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_05335 PF00309 Sigma-54 factor, Activator interacting domain (AID) LNN31_05335 PF04963 Sigma-54 factor, core binding domain LNN31_05335 PF04552 Sigma-54, DNA binding domain LNN31_05340 PF04198 Putative sugar-binding domain LNN31_05345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LNN31_05345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LNN31_05350 PF00162 Phosphoglycerate kinase LNN31_05355 PF00121 Triosephosphate isomerase LNN31_05360 PF01676 Metalloenzyme superfamily LNN31_05360 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LNN31_05365 PF03840 Preprotein translocase SecG subunit LNN31_05370 PF03030 Inorganic H+ pyrophosphatase LNN31_05380 PF17871 AAA lid domain LNN31_05380 PF07724 AAA domain (Cdc48 subfamily) LNN31_05380 PF00004 ATPase family associated with various cellular activities (AAA) LNN31_05380 PF02861 Clp amino terminal domain, pathogenicity island component LNN31_05380 PF10431 C-terminal, D2-small domain, of ClpB protein LNN31_05385 PF00465 Iron-containing alcohol dehydrogenase LNN31_05390 PF00248 Aldo/keto reductase family LNN31_05395 PF00342 Phosphoglucose isomerase LNN31_05400 PF13188 PAS domain LNN31_05400 PF00990 Diguanylate cyclase, GGDEF domain LNN31_05400 PF00563 EAL domain LNN31_05400 PF03707 Bacterial signalling protein N terminal repeat LNN31_05415 PF18324 Hypothetical protein TT1725 LNN31_05415 PF00180 Isocitrate/isopropylmalate dehydrogenase LNN31_05420 PF03976 Polyphosphate kinase 2 (PPK2) LNN31_05425 PF01037 Lrp/AsnC ligand binding domain LNN31_05430 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LNN31_05430 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LNN31_05435 PF01235 Sodium:alanine symporter family LNN31_05440 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LNN31_05440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNN31_05440 PF10371 Domain of unknown function LNN31_05440 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LNN31_05440 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LNN31_05450 PF01807 CHC2 zinc finger LNN31_05450 PF08275 DNA primase catalytic core, N-terminal domain LNN31_05450 PF10410 DnaB-helicase binding domain of primase LNN31_05455 PF00140 Sigma-70 factor, region 1.2 LNN31_05455 PF03979 Sigma-70 factor, region 1.1 LNN31_05455 PF04539 Sigma-70 region 3 LNN31_05455 PF04545 Sigma-70, region 4 LNN31_05455 PF04542 Sigma-70 region 2 LNN31_05460 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LNN31_05465 PF01784 NIF3 (NGG1p interacting factor 3) LNN31_05475 PF00158 Sigma-54 interaction domain LNN31_05475 PF02954 Bacterial regulatory protein, Fis family LNN31_05475 PF00072 Response regulator receiver domain LNN31_05485 PF09370 Phosphoenolpyruvate hydrolase-like LNN31_05490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNN31_05490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNN31_05495 PF01869 BadF/BadG/BcrA/BcrD ATPase family LNN31_05500 PF00072 Response regulator receiver domain LNN31_05500 PF00486 Transcriptional regulatory protein, C terminal LNN31_05505 PF13426 PAS domain LNN31_05505 PF00512 His Kinase A (phospho-acceptor) domain LNN31_05505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_05505 PF00672 HAMP domain LNN31_05520 PF02424 ApbE family LNN31_05525 PF01546 Peptidase family M20/M25/M40 LNN31_05525 PF07687 Peptidase dimerisation domain LNN31_05530 PF13649 Methyltransferase domain LNN31_05615 PF02583 Metal-sensitive transcriptional repressor LNN31_05620 PF00403 Heavy-metal-associated domain LNN31_05640 PF00137 ATP synthase subunit C LNN31_05655 PF16886 ATPsynthase alpha/beta subunit N-term extension LNN31_05655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNN31_05655 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNN31_05660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNN31_05660 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNN31_05665 PF01813 ATP synthase subunit D LNN31_05675 PF00501 AMP-binding enzyme LNN31_05675 PF14535 AMP-binding enzyme C-terminal domain LNN31_05680 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNN31_05680 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LNN31_05695 PF01541 GIY-YIG catalytic domain LNN31_05705 PF08353 Domain of unknown function (DUF1727) LNN31_05705 PF08245 Mur ligase middle domain LNN31_05720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNN31_05720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNN31_05720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNN31_05720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNN31_05725 PF01380 SIS domain LNN31_05730 PF00990 Diguanylate cyclase, GGDEF domain LNN31_05760 PF02607 B12 binding domain LNN31_05760 PF02310 B12 binding domain LNN31_05765 PF02203 Tar ligand binding domain homologue LNN31_05765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_05765 PF00672 HAMP domain LNN31_05770 PF03466 LysR substrate binding domain LNN31_05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_05775 PF03466 LysR substrate binding domain LNN31_05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_05780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_05780 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_05795 PF01571 Aminomethyltransferase folate-binding domain LNN31_05800 PF01268 Formate--tetrahydrofolate ligase LNN31_05805 PF00334 Nucleoside diphosphate kinase LNN31_05815 PF00672 HAMP domain LNN31_05815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_05815 PF02203 Tar ligand binding domain homologue LNN31_05830 PF13247 4Fe-4S dicluster domain LNN31_05835 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain LNN31_05835 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 LNN31_05840 PF02634 FdhD/NarQ family LNN31_05850 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_05850 PF00037 4Fe-4S binding domain LNN31_05850 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNN31_05855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNN31_05855 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_05855 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_05865 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_05865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_05870 PF13556 PucR C-terminal helix-turn-helix domain LNN31_05885 PF01965 DJ-1/PfpI family LNN31_05890 PF13556 PucR C-terminal helix-turn-helix domain LNN31_05890 PF07905 Purine catabolism regulatory protein-like family LNN31_05890 PF17853 GGDEF-like domain LNN31_05900 PF13193 AMP-binding enzyme C-terminal domain LNN31_05900 PF00501 AMP-binding enzyme LNN31_05920 PF01869 BadF/BadG/BcrA/BcrD ATPase family LNN31_05925 PF01869 BadF/BadG/BcrA/BcrD ATPase family LNN31_05930 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNN31_05945 PF01869 BadF/BadG/BcrA/BcrD ATPase family LNN31_05965 PF00501 AMP-binding enzyme LNN31_05965 PF14535 AMP-binding enzyme C-terminal domain LNN31_05970 PF13847 Methyltransferase domain LNN31_05985 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_05985 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_05985 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNN31_05990 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LNN31_05995 PF01869 BadF/BadG/BcrA/BcrD ATPase family LNN31_06000 PF06463 Molybdenum Cofactor Synthesis C LNN31_06000 PF04055 Radical SAM superfamily LNN31_06010 PF13426 PAS domain LNN31_06010 PF08447 PAS fold LNN31_06010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_06025 PF00196 Bacterial regulatory proteins, luxR family LNN31_06040 PF02645 Uncharacterised protein, DegV family COG1307 LNN31_06045 PF00440 Bacterial regulatory proteins, tetR family LNN31_06060 PF02371 Transposase IS116/IS110/IS902 family LNN31_06060 PF01548 Transposase LNN31_06070 PF03109 ABC1 family LNN31_06075 PF00440 Bacterial regulatory proteins, tetR family LNN31_06080 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_06080 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_06080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNN31_06085 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LNN31_06090 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNN31_06115 PF13276 HTH-like domain LNN31_06115 PF00665 Integrase core domain LNN31_06115 PF13333 Integrase core domain LNN31_06135 PF02607 B12 binding domain LNN31_06135 PF02310 B12 binding domain LNN31_06145 PF01571 Aminomethyltransferase folate-binding domain LNN31_06155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_06155 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_06165 PF04002 RadC-like JAB domain LNN31_06190 PF02371 Transposase IS116/IS110/IS902 family LNN31_06190 PF01548 Transposase LNN31_06195 PF00270 DEAD/DEAH box helicase LNN31_06195 PF03880 DbpA RNA binding domain LNN31_06195 PF00271 Helicase conserved C-terminal domain LNN31_06205 PF13291 ACT domain LNN31_06205 PF02824 TGS domain LNN31_06205 PF04607 Region found in RelA / SpoT proteins LNN31_06210 PF12849 PBP superfamily domain LNN31_06215 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_06225 PF00005 ABC transporter LNN31_06230 PF01895 PhoU domain LNN31_06235 PF08448 PAS fold LNN31_06235 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_06245 PF00672 HAMP domain LNN31_06245 PF02203 Tar ligand binding domain homologue LNN31_06260 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06265 PF11871 Domain of unknown function (DUF3391) LNN31_06265 PF01966 HD domain LNN31_06275 PF00361 Proton-conducting membrane transporter LNN31_06280 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LNN31_06300 PF03334 Na+/H+ antiporter subunit LNN31_06305 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LNN31_06330 PF04012 PspA/IM30 family LNN31_06340 PF04073 Aminoacyl-tRNA editing domain LNN31_06345 PF00082 Subtilase family LNN31_06350 PF03707 Bacterial signalling protein N terminal repeat LNN31_06350 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06350 PF00563 EAL domain LNN31_06360 PF12787 EcsC protein family LNN31_06365 PF07739 TipAS antibiotic-recognition domain LNN31_06365 PF13411 MerR HTH family regulatory protein LNN31_06375 PF00005 ABC transporter LNN31_06380 PF05532 CsbD-like LNN31_06385 PF01476 LysM domain LNN31_06385 PF05257 CHAP domain LNN31_06390 PF01384 Phosphate transporter family LNN31_06400 PF00582 Universal stress protein family LNN31_06405 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06410 PF11849 Domain of unknown function (DUF3369) LNN31_06425 PF00149 Calcineurin-like phosphoesterase LNN31_06425 PF10518 TAT (twin-arginine translocation) pathway signal sequence LNN31_06435 PF17886 HSP20-like domain found in ArsA LNN31_06435 PF02374 Anion-transporting ATPase LNN31_06445 PF17886 HSP20-like domain found in ArsA LNN31_06445 PF02374 Anion-transporting ATPase LNN31_06450 PF00871 Acetokinase family LNN31_06455 PF02073 Thermophilic metalloprotease (M29) LNN31_06460 PF00672 HAMP domain LNN31_06460 PF02743 Cache domain LNN31_06460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_06475 PF00690 Cation transporter/ATPase, N-terminus LNN31_06475 PF00689 Cation transporting ATPase, C-terminus LNN31_06500 PF04542 Sigma-70 region 2 LNN31_06500 PF08281 Sigma-70, region 4 LNN31_06515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_06515 PF02203 Tar ligand binding domain homologue LNN31_06515 PF00672 HAMP domain LNN31_06520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_06520 PF00672 HAMP domain LNN31_06520 PF02203 Tar ligand binding domain homologue LNN31_06525 PF13458 Periplasmic binding protein LNN31_06530 PF00498 FHA domain LNN31_06530 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06530 PF00563 EAL domain LNN31_06535 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LNN31_06540 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LNN31_06545 PF03707 Bacterial signalling protein N terminal repeat LNN31_06545 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06545 PF00563 EAL domain LNN31_06550 PF03707 Bacterial signalling protein N terminal repeat LNN31_06550 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06550 PF00563 EAL domain LNN31_06560 PF00571 CBS domain LNN31_06560 PF00005 ABC transporter LNN31_06575 PF00005 ABC transporter LNN31_06580 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_06585 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNN31_06605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNN31_06605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNN31_06610 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LNN31_06615 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LNN31_06620 PF00350 Dynamin family LNN31_06625 PF08443 RimK-like ATP-grasp domain LNN31_06625 PF04262 Glutamate-cysteine ligase LNN31_06625 PF18419 ATP-grasp-like domain LNN31_06630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNN31_06630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNN31_06635 PF00890 FAD binding domain LNN31_06640 PF01593 Flavin containing amine oxidoreductase LNN31_06645 PF00535 Glycosyl transferase family 2 LNN31_06655 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06675 PF13180 PDZ domain LNN31_06675 PF17820 PDZ domain LNN31_06680 PF08448 PAS fold LNN31_06680 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06685 PF01965 DJ-1/PfpI family LNN31_06690 PF00011 Hsp20/alpha crystallin family LNN31_06695 PF12801 4Fe-4S binding domain LNN31_06695 PF12837 4Fe-4S binding domain LNN31_06745 PF05105 Bacteriophage holin family LNN31_06750 PF01471 Putative peptidoglycan binding domain LNN31_06750 PF01520 N-acetylmuramoyl-L-alanine amidase LNN31_06755 PF00355 Rieske [2Fe-2S] domain LNN31_06780 PF00781 Diacylglycerol kinase catalytic domain LNN31_06785 PF13411 MerR HTH family regulatory protein LNN31_06790 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_06790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_06825 PF02607 B12 binding domain LNN31_06825 PF02310 B12 binding domain LNN31_06835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_06835 PF00672 HAMP domain LNN31_06835 PF02203 Tar ligand binding domain homologue LNN31_06845 PF00939 Sodium:sulfate symporter transmembrane region LNN31_06850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_06850 PF00672 HAMP domain LNN31_06850 PF02203 Tar ligand binding domain homologue LNN31_06855 PF00989 PAS fold LNN31_06855 PF00158 Sigma-54 interaction domain LNN31_06855 PF02954 Bacterial regulatory protein, Fis family LNN31_06860 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit LNN31_06860 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain LNN31_06875 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNN31_06875 PF07683 Cobalamin synthesis protein cobW C-terminal domain LNN31_06885 PF02310 B12 binding domain LNN31_06885 PF02607 B12 binding domain LNN31_06895 PF00809 Pterin binding enzyme LNN31_06905 PF00392 Bacterial regulatory proteins, gntR family LNN31_06905 PF07702 UTRA domain LNN31_06940 PF00990 Diguanylate cyclase, GGDEF domain LNN31_06940 PF08448 PAS fold LNN31_06970 PF13411 MerR HTH family regulatory protein LNN31_06970 PF07739 TipAS antibiotic-recognition domain LNN31_06975 PF00330 Aconitase family (aconitate hydratase) LNN31_06980 PF00694 Aconitase C-terminal domain LNN31_06990 PF00672 HAMP domain LNN31_06990 PF02203 Tar ligand binding domain homologue LNN31_06990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_06995 PF12146 Serine aminopeptidase, S33 LNN31_07035 PF06445 GyrI-like small molecule binding domain LNN31_07035 PF13411 MerR HTH family regulatory protein LNN31_07050 PF13411 MerR HTH family regulatory protein LNN31_07060 PF01209 ubiE/COQ5 methyltransferase family LNN31_07075 PF13302 Acetyltransferase (GNAT) domain LNN31_07080 PF02423 Ornithine cyclodeaminase/mu-crystallin family LNN31_07090 PF01266 FAD dependent oxidoreductase LNN31_07095 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_07095 PF04324 BFD-like [2Fe-2S] binding domain LNN31_07100 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_07100 PF04324 BFD-like [2Fe-2S] binding domain LNN31_07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_07115 PF12729 Four helix bundle sensory module for signal transduction LNN31_07115 PF00672 HAMP domain LNN31_07145 PF07690 Major Facilitator Superfamily LNN31_07150 PF12848 ABC transporter LNN31_07150 PF00005 ABC transporter LNN31_07160 PF06480 FtsH Extracellular LNN31_07160 PF00004 ATPase family associated with various cellular activities (AAA) LNN31_07160 PF17862 AAA+ lid domain LNN31_07160 PF01434 Peptidase family M41 LNN31_07165 PF01795 MraW methylase family LNN31_07175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_07175 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_07195 PF00005 ABC transporter LNN31_07215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNN31_07215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNN31_07215 PF01842 ACT domain LNN31_07230 PF00398 Ribosomal RNA adenine dimethylase LNN31_07235 PF13732 Domain of unknown function (DUF4162) LNN31_07235 PF00005 ABC transporter LNN31_07245 PF01557 Fumarylacetoacetate (FAA) hydrolase family LNN31_07250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNN31_07250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNN31_07255 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LNN31_07255 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LNN31_07260 PF01979 Amidohydrolase family LNN31_07265 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LNN31_07270 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LNN31_07275 PF01180 Dihydroorotate dehydrogenase LNN31_07280 PF00156 Phosphoribosyl transferase domain LNN31_07285 PF01965 DJ-1/PfpI family LNN31_07290 PF00563 EAL domain LNN31_07290 PF00990 Diguanylate cyclase, GGDEF domain LNN31_07290 PF00360 Phytochrome region LNN31_07290 PF01590 GAF domain LNN31_07295 PF00672 HAMP domain LNN31_07295 PF02203 Tar ligand binding domain homologue LNN31_07295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_07305 PF01212 Beta-eliminating lyase LNN31_07310 PF01966 HD domain LNN31_07315 PF00672 HAMP domain LNN31_07315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_07315 PF02203 Tar ligand binding domain homologue LNN31_07320 PF02203 Tar ligand binding domain homologue LNN31_07320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_07320 PF00672 HAMP domain LNN31_07340 PF00072 Response regulator receiver domain LNN31_07350 PF00586 AIR synthase related protein, N-terminal domain LNN31_07350 PF02769 AIR synthase related protein, C-terminal domain LNN31_07350 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LNN31_07355 PF00731 AIR carboxylase LNN31_07360 PF01259 SAICAR synthetase LNN31_07365 PF00156 Phosphoribosyl transferase domain LNN31_07370 PF00586 AIR synthase related protein, N-terminal domain LNN31_07370 PF02769 AIR synthase related protein, C-terminal domain LNN31_07375 PF00551 Formyl transferase LNN31_07380 PF02142 MGS-like domain LNN31_07380 PF01808 AICARFT/IMPCHase bienzyme LNN31_07385 PF02843 Phosphoribosylglycinamide synthetase, C domain LNN31_07385 PF02844 Phosphoribosylglycinamide synthetase, N domain LNN31_07385 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LNN31_07390 PF03807 NADP oxidoreductase coenzyme F420-dependent LNN31_07390 PF14748 Pyrroline-5-carboxylate reductase dimerisation LNN31_07395 PF14310 Fibronectin type III-like domain LNN31_07395 PF00933 Glycosyl hydrolase family 3 N terminal domain LNN31_07395 PF01915 Glycosyl hydrolase family 3 C-terminal domain LNN31_07400 PF00814 Glycoprotease family LNN31_07415 PF00814 Glycoprotease family LNN31_07420 PF00166 Chaperonin 10 Kd subunit LNN31_07425 PF00118 TCP-1/cpn60 chaperonin family LNN31_07435 PF00005 ABC transporter LNN31_07435 PF16326 ABC transporter C-terminal domain LNN31_07435 PF12848 ABC transporter LNN31_07440 PF02629 CoA binding domain LNN31_07440 PF06971 Putative DNA-binding protein N-terminus LNN31_07445 PF01381 Helix-turn-helix LNN31_07455 PF07085 DRTGG domain LNN31_07455 PF00571 CBS domain LNN31_07455 PF01368 DHH family LNN31_07455 PF02833 DHHA2 domain LNN31_07465 PF00753 Metallo-beta-lactamase superfamily LNN31_07465 PF03772 Competence protein LNN31_07465 PF13567 Domain of unknown function (DUF4131) LNN31_07470 PF06144 DNA polymerase III, delta subunit LNN31_07475 PF01649 Ribosomal protein S20 LNN31_07480 PF00009 Elongation factor Tu GTP binding domain LNN31_07480 PF14492 Elongation Factor G, domain II LNN31_07480 PF06421 GTP-binding protein LepA C-terminus LNN31_07480 PF00679 Elongation factor G C-terminus LNN31_07480 PF03144 Elongation factor Tu domain 2 LNN31_07485 PF01791 DeoC/LacD family aldolase LNN31_07490 PF02733 Dak1 domain LNN31_07500 PF02734 DAK2 domain LNN31_07505 PF13936 Helix-turn-helix domain LNN31_07505 PF04198 Putative sugar-binding domain LNN31_07510 PF08220 DeoR-like helix-turn-helix domain LNN31_07510 PF00455 DeoR C terminal sensor domain LNN31_07520 PF02310 B12 binding domain LNN31_07520 PF02607 B12 binding domain LNN31_07530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNN31_07530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNN31_07535 PF02733 Dak1 domain LNN31_07540 PF00072 Response regulator receiver domain LNN31_07540 PF04397 LytTr DNA-binding domain LNN31_07550 PF13936 Helix-turn-helix domain LNN31_07550 PF04198 Putative sugar-binding domain LNN31_07560 PF04011 LemA family LNN31_07565 PF13419 Haloacid dehalogenase-like hydrolase LNN31_07575 PF02915 Rubrerythrin LNN31_07585 PF01168 Alanine racemase, N-terminal domain LNN31_07590 PF08264 Anticodon-binding domain of tRNA LNN31_07590 PF00133 tRNA synthetases class I (I, L, M and V) LNN31_07590 PF13603 Leucyl-tRNA synthetase, Domain 2 LNN31_07590 PF09334 tRNA synthetases class I (M) LNN31_07595 PF00075 RNase H LNN31_07600 PF02645 Uncharacterised protein, DegV family COG1307 LNN31_07605 PF04101 Glycosyltransferase family 28 C-terminal domain LNN31_07605 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase LNN31_07620 PF16199 Radical_SAM C-terminal domain LNN31_07620 PF04055 Radical SAM superfamily LNN31_07625 PF04607 Region found in RelA / SpoT proteins LNN31_07630 PF01709 Transcriptional regulator LNN31_07640 PF03853 YjeF-related protein N-terminus LNN31_07640 PF01256 Carbohydrate kinase LNN31_07645 PF01545 Cation efflux family LNN31_07645 PF16916 Dimerisation domain of Zinc Transporter LNN31_07650 PF04055 Radical SAM superfamily LNN31_07650 PF00919 Uncharacterized protein family UPF0004 LNN31_07650 PF01938 TRAM domain LNN31_07655 PF00488 MutS domain V LNN31_07655 PF05190 MutS family domain IV LNN31_07655 PF05192 MutS domain III LNN31_07655 PF05188 MutS domain II LNN31_07655 PF01624 MutS domain I LNN31_07660 PF00575 S1 RNA binding domain LNN31_07660 PF00773 RNB domain LNN31_07660 PF08206 Ribonuclease B OB domain LNN31_07660 PF17876 Cold shock domain LNN31_07665 PF01668 SmpB protein LNN31_07715 PF01367 5'-3' exonuclease, C-terminal SAM fold LNN31_07715 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNN31_07715 PF00476 DNA polymerase family A LNN31_07715 PF01612 3'-5' exonuclease LNN31_07785 PF01555 DNA methylase LNN31_07820 PF05036 Sporulation related domain LNN31_07820 PF01520 N-acetylmuramoyl-L-alanine amidase LNN31_07825 PF03354 Phage Terminase LNN31_07830 PF04860 Phage portal protein LNN31_07930 PF02796 Helix-turn-helix domain of resolvase LNN31_07930 PF00239 Resolvase, N terminal domain LNN31_07940 PF00731 AIR carboxylase LNN31_07945 PF01969 Protein of unknown function DUF111 LNN31_07950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_07950 PF03466 LysR substrate binding domain LNN31_07975 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNN31_07975 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_07975 PF00037 4Fe-4S binding domain LNN31_07980 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_07980 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNN31_07980 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_07985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_07985 PF03466 LysR substrate binding domain LNN31_07990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_07990 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_07995 PF03466 LysR substrate binding domain LNN31_07995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_08000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_08000 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_08025 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_08025 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_08025 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNN31_08035 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNN31_08045 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LNN31_08050 PF13556 PucR C-terminal helix-turn-helix domain LNN31_08050 PF07905 Purine catabolism regulatory protein-like family LNN31_08050 PF17853 GGDEF-like domain LNN31_08055 PF01571 Aminomethyltransferase folate-binding domain LNN31_08060 PF01268 Formate--tetrahydrofolate ligase LNN31_08065 PF00334 Nucleoside diphosphate kinase LNN31_08075 PF00672 HAMP domain LNN31_08075 PF02203 Tar ligand binding domain homologue LNN31_08075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_08085 PF06018 CodY GAF-like domain LNN31_08085 PF17853 GGDEF-like domain LNN31_08085 PF13556 PucR C-terminal helix-turn-helix domain LNN31_08090 PF01571 Aminomethyltransferase folate-binding domain LNN31_08105 PF01695 IstB-like ATP binding protein LNN31_08115 PF00665 Integrase core domain LNN31_08120 PF01695 IstB-like ATP binding protein LNN31_08135 PF01131 DNA topoisomerase LNN31_08135 PF01751 Toprim domain LNN31_08135 PF01396 Topoisomerase DNA binding C4 zinc finger LNN31_08140 PF01381 Helix-turn-helix LNN31_08175 PF01695 IstB-like ATP binding protein LNN31_08205 PF00872 Transposase, Mutator family LNN31_08210 PF13614 AAA domain LNN31_08220 PF03432 Relaxase/Mobilisation nuclease domain LNN31_08255 PF01751 Toprim domain LNN31_08255 PF01131 DNA topoisomerase LNN31_08285 PF12696 TraM recognition site of TraD and TraG LNN31_08360 PF13333 Integrase core domain LNN31_08360 PF00665 Integrase core domain LNN31_08360 PF13276 HTH-like domain LNN31_08385 PF17841 BID domain of Bartonella effector protein (Bep) LNN31_08385 PF02661 Fic/DOC family LNN31_08410 PF12733 Cadherin-like beta sandwich domain LNN31_08410 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) LNN31_08445 PF05717 IS66 Orf2 like protein LNN31_08490 PF00872 Transposase, Mutator family LNN31_08495 PF00665 Integrase core domain LNN31_08500 PF01695 IstB-like ATP binding protein LNN31_08505 PF00665 Integrase core domain LNN31_08510 PF01695 IstB-like ATP binding protein LNN31_08525 PF07883 Cupin domain LNN31_08525 PF01381 Helix-turn-helix LNN31_08530 PF00202 Aminotransferase class-III LNN31_08535 PF13520 Amino acid permease LNN31_08540 PF00465 Iron-containing alcohol dehydrogenase LNN31_08565 PF03707 Bacterial signalling protein N terminal repeat LNN31_08565 PF00563 EAL domain LNN31_08565 PF00990 Diguanylate cyclase, GGDEF domain LNN31_08570 PF10388 EAL-domain associated signalling protein domain LNN31_08570 PF00563 EAL domain LNN31_08585 PF03707 Bacterial signalling protein N terminal repeat LNN31_08585 PF00990 Diguanylate cyclase, GGDEF domain LNN31_08585 PF00563 EAL domain LNN31_08590 PF01814 Hemerythrin HHE cation binding domain LNN31_08595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_08595 PF00672 HAMP domain LNN31_08595 PF02203 Tar ligand binding domain homologue LNN31_08610 PF08668 HDOD domain LNN31_08610 PF00563 EAL domain LNN31_08615 PF00563 EAL domain LNN31_08615 PF08668 HDOD domain LNN31_08625 PF01699 Sodium/calcium exchanger protein LNN31_08630 PF06983 3-demethylubiquinone-9 3-methyltransferase LNN31_08635 PF00375 Sodium:dicarboxylate symporter family LNN31_08640 PF01554 MatE LNN31_08655 PF08448 PAS fold LNN31_08655 PF13426 PAS domain LNN31_08655 PF00563 EAL domain LNN31_08655 PF00990 Diguanylate cyclase, GGDEF domain LNN31_08655 PF05231 MASE1 LNN31_08655 PF08447 PAS fold LNN31_08660 PF03707 Bacterial signalling protein N terminal repeat LNN31_08660 PF00990 Diguanylate cyclase, GGDEF domain LNN31_08660 PF00563 EAL domain LNN31_08665 PF02554 Carbon starvation protein CstA LNN31_08670 PF03306 Alpha-acetolactate decarboxylase LNN31_08675 PF00155 Aminotransferase class I and II LNN31_08675 PF00392 Bacterial regulatory proteins, gntR family LNN31_08680 PF02371 Transposase IS116/IS110/IS902 family LNN31_08680 PF01548 Transposase LNN31_08685 PF00892 EamA-like transporter family LNN31_08700 PF01206 Sulfurtransferase TusA LNN31_08705 PF13686 DsrE/DsrF/DrsH-like family LNN31_08710 PF00266 Aminotransferase class-V LNN31_08715 PF01592 NifU-like N terminal domain LNN31_08715 PF04324 BFD-like [2Fe-2S] binding domain LNN31_08715 PF01106 NifU-like domain LNN31_08725 PF01613 Flavin reductase like domain LNN31_08730 PF01063 Amino-transferase class IV LNN31_08735 PF04286 Protein of unknown function (DUF445) LNN31_08750 PF02371 Transposase IS116/IS110/IS902 family LNN31_08750 PF01548 Transposase LNN31_08755 PF00005 ABC transporter LNN31_08760 PF01436 NHL repeat LNN31_08760 PF00069 Protein kinase domain LNN31_08760 PF08450 SMP-30/Gluconolactonase/LRE-like region LNN31_08770 PF13649 Methyltransferase domain LNN31_08775 PF03553 Na+/H+ antiporter family LNN31_08790 PF00334 Nucleoside diphosphate kinase LNN31_08795 PF01235 Sodium:alanine symporter family LNN31_08805 PF00829 Ribosomal prokaryotic L21 protein LNN31_08810 PF04327 Cysteine protease Prp LNN31_08815 PF01016 Ribosomal L27 protein LNN31_08820 PF09269 Domain of unknown function (DUF1967) LNN31_08820 PF01926 50S ribosome-binding GTPase LNN31_08820 PF01018 GTP1/OBG LNN31_08830 PF01467 Cytidylyltransferase-like LNN31_08835 PF01966 HD domain LNN31_08845 PF01926 50S ribosome-binding GTPase LNN31_08845 PF06071 Protein of unknown function (DUF933) LNN31_08855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNN31_08855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNN31_08855 PF03129 Anticodon binding domain LNN31_08855 PF02824 TGS domain LNN31_08865 PF02653 Branched-chain amino acid transport system / permease component LNN31_08870 PF00005 ABC transporter LNN31_08870 PF08402 TOBE domain LNN31_08875 PF05198 Translation initiation factor IF-3, N-terminal domain LNN31_08875 PF00707 Translation initiation factor IF-3, C-terminal domain LNN31_08880 PF01632 Ribosomal protein L35 LNN31_08885 PF00453 Ribosomal protein L20 LNN31_08890 PF02386 Cation transport protein LNN31_08895 PF02080 TrkA-C domain LNN31_08895 PF02254 TrkA-N domain LNN31_08900 PF00588 SpoU rRNA Methylase family LNN31_08900 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNN31_08905 PF01409 tRNA synthetases class II core domain (F) LNN31_08905 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LNN31_08910 PF01588 Putative tRNA binding domain LNN31_08910 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LNN31_08910 PF03484 tRNA synthetase B5 domain LNN31_08910 PF03147 Ferredoxin-fold anticodon binding domain LNN31_08910 PF03483 B3/4 domain LNN31_08925 PF00717 Peptidase S24-like LNN31_08925 PF01726 LexA DNA binding domain LNN31_08930 PF00589 Phage integrase family LNN31_08930 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_08935 PF06953 Arsenical resistance operon trans-acting repressor ArsD LNN31_08945 PF01022 Bacterial regulatory protein, arsR family LNN31_08955 PF02374 Anion-transporting ATPase LNN31_08960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_08960 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_08965 PF00266 Aminotransferase class-V LNN31_08985 PF01597 Glycine cleavage H-protein LNN31_09000 PF01022 Bacterial regulatory protein, arsR family LNN31_09005 PF01451 Low molecular weight phosphotyrosine protein phosphatase LNN31_09010 PF01451 Low molecular weight phosphotyrosine protein phosphatase LNN31_09020 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LNN31_09020 PF01926 50S ribosome-binding GTPase LNN31_09045 PF00005 ABC transporter LNN31_09050 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNN31_09055 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_09060 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_09065 PF01594 AI-2E family transporter LNN31_09075 PF17158 Membrane-associated sensor, integral membrane domain LNN31_09075 PF00990 Diguanylate cyclase, GGDEF domain LNN31_09080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNN31_09090 PF00753 Metallo-beta-lactamase superfamily LNN31_09130 PF02384 N-6 DNA Methylase LNN31_09160 PF08264 Anticodon-binding domain of tRNA LNN31_09160 PF00133 tRNA synthetases class I (I, L, M and V) LNN31_09160 PF10458 Valyl tRNA synthetase tRNA binding arm LNN31_09165 PF00534 Glycosyl transferases group 1 LNN31_09165 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase LNN31_09175 PF00696 Amino acid kinase family LNN31_09180 PF02867 Ribonucleotide reductase, barrel domain LNN31_09180 PF08471 Class II vitamin B12-dependent ribonucleotide reductase LNN31_09185 PF02660 Glycerol-3-phosphate acyltransferase LNN31_09205 PF01515 Phosphate acetyl/butaryl transferase LNN31_09210 PF00285 Citrate synthase, C-terminal domain LNN31_09225 PF13277 YmdB-like protein LNN31_09230 PF12072 Domain of unknown function (DUF3552) LNN31_09230 PF00013 KH domain LNN31_09230 PF01966 HD domain LNN31_09235 PF00154 recA bacterial DNA recombination protein LNN31_09240 PF02464 Competence-damaged protein LNN31_09240 PF18146 Damage-inducible protein CinA KH domain LNN31_09240 PF00994 Probable molybdopterin binding domain LNN31_09245 PF01066 CDP-alcohol phosphatidyltransferase LNN31_09250 PF00919 Uncharacterized protein family UPF0004 LNN31_09250 PF18693 TRAM domain LNN31_09250 PF04055 Radical SAM superfamily LNN31_09255 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LNN31_09255 PF17854 FtsK alpha domain LNN31_09255 PF09397 Ftsk gamma domain LNN31_09255 PF01580 FtsK/SpoIIIE family LNN31_09260 PF00692 dUTPase LNN31_09265 PF00013 KH domain LNN31_09265 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LNN31_09265 PF01138 3' exoribonuclease family, domain 1 LNN31_09265 PF03725 3' exoribonuclease family, domain 2 LNN31_09265 PF00575 S1 RNA binding domain LNN31_09270 PF00312 Ribosomal protein S15 LNN31_09275 PF01687 Riboflavin kinase LNN31_09275 PF06574 FAD synthetase LNN31_09280 PF01509 TruB family pseudouridylate synthase (N terminal domain) LNN31_09280 PF16198 tRNA pseudouridylate synthase B C-terminal domain LNN31_09285 PF02272 DHHA1 domain LNN31_09285 PF01368 DHH family LNN31_09290 PF02033 Ribosome-binding factor A LNN31_09295 PF00009 Elongation factor Tu GTP binding domain LNN31_09295 PF11987 Translation-initiation factor 2 LNN31_09295 PF04760 Translation initiation factor IF-2, N-terminal region LNN31_09300 PF04296 Protein of unknown function (DUF448) LNN31_09305 PF00575 S1 RNA binding domain LNN31_09305 PF08529 NusA N-terminal domain LNN31_09305 PF13184 NusA-like KH domain LNN31_09310 PF17384 RimP C-terminal SH3 domain LNN31_09310 PF02576 RimP N-terminal domain LNN31_09315 PF01765 Ribosome recycling factor LNN31_09320 PF00696 Amino acid kinase family LNN31_09325 PF00889 Elongation factor TS LNN31_09330 PF00318 Ribosomal protein S2 LNN31_09335 PF00004 ATPase family associated with various cellular activities (AAA) LNN31_09335 PF10431 C-terminal, D2-small domain, of ClpB protein LNN31_09335 PF07724 AAA domain (Cdc48 subfamily) LNN31_09340 PF00227 Proteasome subunit LNN31_09345 PF01751 Toprim domain LNN31_09345 PF01131 DNA topoisomerase LNN31_09345 PF01396 Topoisomerase DNA binding C4 zinc finger LNN31_09350 PF02481 DNA recombination-mediator protein A LNN31_09355 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNN31_09385 PF00437 Type II/IV secretion system protein LNN31_09390 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNN31_09445 PF00563 EAL domain LNN31_09445 PF00990 Diguanylate cyclase, GGDEF domain LNN31_09445 PF03707 Bacterial signalling protein N terminal repeat LNN31_09455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNN31_09460 PF02565 Recombination protein O C terminal LNN31_09460 PF11967 Recombination protein O N terminal LNN31_09465 PF01926 50S ribosome-binding GTPase LNN31_09465 PF07650 KH domain LNN31_09470 PF01219 Prokaryotic diacylglycerol kinase LNN31_09475 PF02130 Uncharacterized protein family UPF0054 LNN31_09490 PF03060 Nitronate monooxygenase LNN31_09500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LNN31_09500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LNN31_09505 PF00550 Phosphopantetheine attachment site LNN31_09510 PF03060 Nitronate monooxygenase LNN31_09515 PF00698 Acyl transferase domain LNN31_09525 PF02801 Beta-ketoacyl synthase, C-terminal domain LNN31_09525 PF00109 Beta-ketoacyl synthase, N-terminal domain LNN31_09530 PF00364 Biotin-requiring enzyme LNN31_09535 PF07977 FabA-like domain LNN31_09540 PF00289 Biotin carboxylase, N-terminal domain LNN31_09540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNN31_09540 PF02785 Biotin carboxylase C-terminal domain LNN31_09545 PF17848 Acetyl-coA carboxylase zinc finger domain LNN31_09545 PF01039 Carboxyl transferase domain LNN31_09550 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LNN31_09555 PF00936 BMC domain LNN31_09565 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LNN31_09570 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNN31_09570 PF18267 Rubredoxin NAD+ reductase C-terminal domain LNN31_09570 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_09570 PF04324 BFD-like [2Fe-2S] binding domain LNN31_09580 PF03063 Prismane/CO dehydrogenase family LNN31_09595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_09595 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_09600 PF01022 Bacterial regulatory protein, arsR family LNN31_09605 PF01047 MarR family LNN31_09610 PF00255 Glutathione peroxidase LNN31_09620 PF08448 PAS fold LNN31_09620 PF00990 Diguanylate cyclase, GGDEF domain LNN31_09630 PF01739 CheR methyltransferase, SAM binding domain LNN31_09630 PF03705 CheR methyltransferase, all-alpha domain LNN31_09640 PF00486 Transcriptional regulatory protein, C terminal LNN31_09640 PF00072 Response regulator receiver domain LNN31_09645 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNN31_09645 PF00072 Response regulator receiver domain LNN31_09645 PF00512 His Kinase A (phospho-acceptor) domain LNN31_09645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_09645 PF00672 HAMP domain LNN31_09645 PF01627 Hpt domain LNN31_09650 PF00672 HAMP domain LNN31_09650 PF02203 Tar ligand binding domain homologue LNN31_09650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_09655 PF01584 CheW-like domain LNN31_09660 PF01584 CheW-like domain LNN31_09660 PF02895 Signal transducing histidine kinase, homodimeric domain LNN31_09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_09660 PF07194 P2 response regulator binding domain LNN31_09660 PF01627 Hpt domain LNN31_09665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_09665 PF00672 HAMP domain LNN31_09675 PF12833 Helix-turn-helix domain LNN31_09675 PF06445 GyrI-like small molecule binding domain LNN31_09690 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ LNN31_09715 PF00665 Integrase core domain LNN31_09730 PF02661 Fic/DOC family LNN31_09745 PF00239 Resolvase, N terminal domain LNN31_09745 PF02796 Helix-turn-helix domain of resolvase LNN31_09755 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LNN31_09770 PF04055 Radical SAM superfamily LNN31_09785 PF03432 Relaxase/Mobilisation nuclease domain LNN31_09800 PF00665 Integrase core domain LNN31_09810 PF13333 Integrase core domain LNN31_09810 PF13276 HTH-like domain LNN31_09810 PF00665 Integrase core domain LNN31_09835 PF12161 HsdM N-terminal domain LNN31_09835 PF02384 N-6 DNA Methylase LNN31_09850 PF18766 SWI2/SNF2 ATPase LNN31_09850 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LNN31_09850 PF12008 Type I restriction and modification enzyme - subunit R C terminal LNN31_09895 PF04002 RadC-like JAB domain LNN31_09910 PF13333 Integrase core domain LNN31_09910 PF00665 Integrase core domain LNN31_09910 PF13276 HTH-like domain LNN31_09935 PF00877 NlpC/P60 family LNN31_09940 PF13333 Integrase core domain LNN31_09940 PF13276 HTH-like domain LNN31_09940 PF00665 Integrase core domain LNN31_09985 PF01695 IstB-like ATP binding protein LNN31_10015 PF04542 Sigma-70 region 2 LNN31_10015 PF04539 Sigma-70 region 3 LNN31_10015 PF04545 Sigma-70, region 4 LNN31_10020 PF08241 Methyltransferase domain LNN31_10030 PF00009 Elongation factor Tu GTP binding domain LNN31_10030 PF03764 Elongation factor G, domain IV LNN31_10030 PF14492 Elongation Factor G, domain II LNN31_10030 PF00679 Elongation factor G C-terminus LNN31_10060 PF17762 HTH domain found in ParB protein LNN31_10060 PF02195 ParB-like nuclease domain LNN31_10065 PF13614 AAA domain LNN31_10085 PF01938 TRAM domain LNN31_10085 PF05958 tRNA (Uracil-5-)-methyltransferase LNN31_10095 PF11842 Domain of unknown function (DUF3362) LNN31_10095 PF04055 Radical SAM superfamily LNN31_10095 PF08497 Radical SAM N-terminal LNN31_10100 PF02654 Cobalamin-5-phosphate synthase LNN31_10105 PF00381 PTS HPr component phosphorylation site LNN31_10115 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNN31_10115 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNN31_10120 PF00701 Dihydrodipicolinate synthetase family LNN31_10125 PF01113 Dihydrodipicolinate reductase, N-terminus LNN31_10125 PF05173 Dihydrodipicolinate reductase, C-terminus LNN31_10130 PF00696 Amino acid kinase family LNN31_10130 PF13840 ACT domain LNN31_10140 PF00072 Response regulator receiver domain LNN31_10145 PF00501 AMP-binding enzyme LNN31_10145 PF13193 AMP-binding enzyme C-terminal domain LNN31_10145 PF00668 Condensation domain LNN31_10145 PF00550 Phosphopantetheine attachment site LNN31_10160 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10170 PF02608 ABC transporter substrate-binding protein PnrA-like LNN31_10180 PF00072 Response regulator receiver domain LNN31_10230 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10255 PF01661 Macro domain LNN31_10270 PF00266 Aminotransferase class-V LNN31_10295 PF01507 Phosphoadenosine phosphosulfate reductase family LNN31_10330 PF00072 Response regulator receiver domain LNN31_10340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_10340 PF00512 His Kinase A (phospho-acceptor) domain LNN31_10340 PF18415 Histidine kinase receptor ArcB trans-membrane domain LNN31_10340 PF00072 Response regulator receiver domain LNN31_10340 PF00989 PAS fold LNN31_10340 PF01627 Hpt domain LNN31_10345 PF04002 RadC-like JAB domain LNN31_10375 PF02535 ZIP Zinc transporter LNN31_10385 PF05524 PEP-utilising enzyme, N-terminal LNN31_10385 PF00381 PTS HPr component phosphorylation site LNN31_10385 PF00391 PEP-utilising enzyme, mobile domain LNN31_10385 PF03610 PTS system fructose IIA component LNN31_10390 PF02734 DAK2 domain LNN31_10395 PF02733 Dak1 domain LNN31_10400 PF00290 Tryptophan synthase alpha chain LNN31_10405 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_10410 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LNN31_10415 PF00218 Indole-3-glycerol phosphate synthase LNN31_10420 PF00591 Glycosyl transferase family, a/b domain LNN31_10420 PF02885 Glycosyl transferase family, helical bundle domain LNN31_10425 PF00591 Glycosyl transferase family, a/b domain LNN31_10425 PF02885 Glycosyl transferase family, helical bundle domain LNN31_10425 PF00117 Glutamine amidotransferase class-I LNN31_10430 PF00425 chorismate binding enzyme LNN31_10430 PF04715 Anthranilate synthase component I, N terminal region LNN31_10445 PF03193 RsgA GTPase LNN31_10450 PF10400 Virulence activator alpha C-term LNN31_10450 PF03551 Transcriptional regulator PadR-like family LNN31_10460 PF02203 Tar ligand binding domain homologue LNN31_10460 PF00672 HAMP domain LNN31_10460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_10470 PF00072 Response regulator receiver domain LNN31_10475 PF00271 Helicase conserved C-terminal domain LNN31_10475 PF00270 DEAD/DEAH box helicase LNN31_10485 PF00313 'Cold-shock' DNA-binding domain LNN31_10500 PF00294 pfkB family carbohydrate kinase LNN31_10505 PF00797 N-acetyltransferase LNN31_10515 PF09382 RQC domain LNN31_10515 PF00271 Helicase conserved C-terminal domain LNN31_10515 PF16124 RecQ zinc-binding LNN31_10515 PF00570 HRDC domain LNN31_10515 PF00270 DEAD/DEAH box helicase LNN31_10535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNN31_10540 PF02545 Maf-like protein LNN31_10545 PF00144 Beta-lactamase LNN31_10545 PF11954 Domain of unknown function (DUF3471) LNN31_10555 PF13091 PLD-like domain LNN31_10560 PF00999 Sodium/hydrogen exchanger family LNN31_10565 PF00474 Sodium:solute symporter family LNN31_10575 PF00563 EAL domain LNN31_10575 PF03707 Bacterial signalling protein N terminal repeat LNN31_10575 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10610 PF00563 EAL domain LNN31_10610 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10610 PF03707 Bacterial signalling protein N terminal repeat LNN31_10625 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10635 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain LNN31_10635 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 LNN31_10640 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10640 PF08448 PAS fold LNN31_10650 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_10655 PF07694 5TMR of 5TMR-LYT LNN31_10655 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10665 PF01323 DSBA-like thioredoxin domain LNN31_10680 PF00392 Bacterial regulatory proteins, gntR family LNN31_10680 PF07702 UTRA domain LNN31_10685 PF00005 ABC transporter LNN31_10695 PF06580 Histidine kinase LNN31_10695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_10700 PF00072 Response regulator receiver domain LNN31_10700 PF04397 LytTr DNA-binding domain LNN31_10725 PF05105 Bacteriophage holin family LNN31_10750 PF00005 ABC transporter LNN31_10770 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNN31_10770 PF01612 3'-5' exonuclease LNN31_10770 PF00476 DNA polymerase family A LNN31_10770 PF01367 5'-3' exonuclease, C-terminal SAM fold LNN31_10780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LNN31_10780 PF14579 Helix-hairpin-helix motif LNN31_10780 PF11490 DNA polymerase III polC-type N-terminus II LNN31_10780 PF00929 Exonuclease LNN31_10780 PF07733 Bacterial DNA polymerase III alpha NTPase domain LNN31_10780 PF02811 PHP domain LNN31_10785 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10785 PF17151 Periplasmic sensor domain LNN31_10795 PF01116 Fructose-bisphosphate aldolase class-II LNN31_10805 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_10805 PF04324 BFD-like [2Fe-2S] binding domain LNN31_10810 PF04324 BFD-like [2Fe-2S] binding domain LNN31_10810 PF01266 FAD dependent oxidoreductase LNN31_10820 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNN31_10820 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNN31_10830 PF00561 alpha/beta hydrolase fold LNN31_10850 PF03063 Prismane/CO dehydrogenase family LNN31_10855 PF17179 4Fe-4S dicluster domain LNN31_10860 PF00175 Oxidoreductase NAD-binding domain LNN31_10860 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LNN31_10865 PF13187 4Fe-4S dicluster domain LNN31_10865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNN31_10865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNN31_10870 PF00753 Metallo-beta-lactamase superfamily LNN31_10870 PF00301 Rubredoxin LNN31_10870 PF00258 Flavodoxin LNN31_10875 PF17874 MalT-like TPR region LNN31_10875 PF00196 Bacterial regulatory proteins, luxR family LNN31_10880 PF12848 ABC transporter LNN31_10880 PF00005 ABC transporter LNN31_10885 PF00183 Hsp90 protein LNN31_10890 PF00155 Aminotransferase class I and II LNN31_10895 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNN31_10895 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LNN31_10915 PF03591 AzlC protein LNN31_10920 PF00155 Aminotransferase class I and II LNN31_10920 PF00392 Bacterial regulatory proteins, gntR family LNN31_10925 PF00753 Metallo-beta-lactamase superfamily LNN31_10925 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LNN31_10925 PF10996 Beta-Casp domain LNN31_10930 PF05362 Lon protease (S16) C-terminal proteolytic domain LNN31_10930 PF13654 AAA domain LNN31_10935 PF00672 HAMP domain LNN31_10935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_10935 PF12729 Four helix bundle sensory module for signal transduction LNN31_10940 PF12729 Four helix bundle sensory module for signal transduction LNN31_10940 PF00672 HAMP domain LNN31_10940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_10960 PF03358 NADPH-dependent FMN reductase LNN31_10970 PF13426 PAS domain LNN31_10970 PF08448 PAS fold LNN31_10970 PF08447 PAS fold LNN31_10970 PF05231 MASE1 LNN31_10970 PF00990 Diguanylate cyclase, GGDEF domain LNN31_10970 PF00563 EAL domain LNN31_10985 PF00005 ABC transporter LNN31_10985 PF12848 ABC transporter LNN31_10990 PF12411 Choline sulfatase enzyme C terminal LNN31_10990 PF00884 Sulfatase LNN31_10995 PF13186 Iron-sulfur cluster-binding domain LNN31_10995 PF04055 Radical SAM superfamily LNN31_11000 PF13614 AAA domain LNN31_11005 PF13807 G-rich domain on putative tyrosine kinase LNN31_11005 PF02706 Chain length determinant protein LNN31_11010 PF03816 Cell envelope-related transcriptional attenuator domain LNN31_11015 PF02719 Polysaccharide biosynthesis protein LNN31_11025 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNN31_11025 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNN31_11025 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNN31_11030 PF01370 NAD dependent epimerase/dehydratase family LNN31_11035 PF12708 Pectate lyase superfamily protein LNN31_11035 PF13229 Right handed beta helix region LNN31_11035 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LNN31_11040 PF13229 Right handed beta helix region LNN31_11040 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LNN31_11040 PF12708 Pectate lyase superfamily protein LNN31_11045 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LNN31_11075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNN31_11080 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LNN31_11090 PF00535 Glycosyl transferase family 2 LNN31_11105 PF13439 Glycosyltransferase Family 4 LNN31_11110 PF13439 Glycosyltransferase Family 4 LNN31_11110 PF00534 Glycosyl transferases group 1 LNN31_11115 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNN31_11120 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_11125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNN31_11125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LNN31_11130 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNN31_11130 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNN31_11130 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNN31_11140 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_11145 PF02397 Bacterial sugar transferase LNN31_11150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNN31_11155 PF13229 Right handed beta helix region LNN31_11155 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LNN31_11155 PF12708 Pectate lyase superfamily protein LNN31_11165 PF02021 Uncharacterised protein family UPF0102 LNN31_11170 PF01351 Ribonuclease HII LNN31_11175 PF01926 50S ribosome-binding GTPase LNN31_11180 PF10502 Signal peptidase, peptidase S26 LNN31_11185 PF01245 Ribosomal protein L19 LNN31_11190 PF01746 tRNA (Guanine-1)-methyltransferase LNN31_11195 PF01782 RimM N-terminal domain LNN31_11205 PF00886 Ribosomal protein S16 LNN31_11210 PF00448 SRP54-type protein, GTPase domain LNN31_11210 PF02881 SRP54-type protein, helical bundle domain LNN31_11210 PF02978 Signal peptide binding domain LNN31_11215 PF04297 Putative helix-turn-helix protein, YlxM / p13 like LNN31_11220 PF00448 SRP54-type protein, GTPase domain LNN31_11220 PF02881 SRP54-type protein, helical bundle domain LNN31_11225 PF06470 SMC proteins Flexible Hinge Domain LNN31_11225 PF02463 RecF/RecN/SMC N terminal domain LNN31_11230 PF00035 Double-stranded RNA binding motif LNN31_11230 PF14622 Ribonuclease-III-like LNN31_11235 PF00550 Phosphopantetheine attachment site LNN31_11240 PF02504 Fatty acid synthesis protein LNN31_11245 PF01783 Ribosomal L32p protein family LNN31_11255 PF00871 Acetokinase family LNN31_11260 PF05636 HIGH Nucleotidyl Transferase LNN31_11265 PF00135 Carboxylesterase family LNN31_11285 PF05191 Adenylate kinase, active site lid LNN31_11290 PF01966 HD domain LNN31_11290 PF11871 Domain of unknown function (DUF3391) LNN31_11295 PF06207 Protein of unknown function (DUF1002) LNN31_11305 PF01121 Dephospho-CoA kinase LNN31_11310 PF01367 5'-3' exonuclease, C-terminal SAM fold LNN31_11310 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNN31_11310 PF00476 DNA polymerase family A LNN31_11315 PF01381 Helix-turn-helix LNN31_11330 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNN31_11330 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNN31_11330 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_11340 PF10369 Small subunit of acetolactate synthase LNN31_11345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNN31_11345 PF00205 Thiamine pyrophosphate enzyme, central domain LNN31_11345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNN31_11355 PF13509 S1 domain LNN31_11355 PF17783 CvfB-like winged helix domain LNN31_11365 PF01467 Cytidylyltransferase-like LNN31_11375 PF00270 DEAD/DEAH box helicase LNN31_11375 PF00271 Helicase conserved C-terminal domain LNN31_11375 PF17191 RecG wedge domain LNN31_11380 PF02734 DAK2 domain LNN31_11380 PF13684 Dihydroxyacetone kinase family LNN31_11385 PF03780 Asp23 family, cell envelope-related function LNN31_11390 PF00830 Ribosomal L28 family LNN31_11400 PF03193 RsgA GTPase LNN31_11400 PF16745 RsgA N-terminal domain LNN31_11405 PF03793 PASTA domain LNN31_11405 PF00069 Protein kinase domain LNN31_11415 PF04055 Radical SAM superfamily LNN31_11420 PF01189 16S rRNA methyltransferase RsmB/F LNN31_11420 PF01029 NusB family LNN31_11425 PF04298 Putative neutral zinc metallopeptidase LNN31_11430 PF02911 Formyl transferase, C-terminal domain LNN31_11430 PF00551 Formyl transferase LNN31_11435 PF01327 Polypeptide deformylase LNN31_11440 PF04851 Type III restriction enzyme, res subunit LNN31_11440 PF00271 Helicase conserved C-terminal domain LNN31_11440 PF17764 3′ DNA-binding domain (3′BD) LNN31_11440 PF18074 Primosomal protein N C-terminal domain LNN31_11440 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LNN31_11445 PF01192 RNA polymerase Rpb6 LNN31_11450 PF00625 Guanylate kinase LNN31_11455 PF08340 Domain of unknown function (DUF1732) LNN31_11455 PF03755 YicC-like family, N-terminal region LNN31_11460 PF05670 NFACT protein RNA binding domain LNN31_11465 PF00849 RNA pseudouridylate synthase LNN31_11465 PF01479 S4 domain LNN31_11475 PF04472 Cell division protein SepF LNN31_11480 PF01168 Alanine racemase, N-terminal domain LNN31_11500 PF01336 OB-fold nucleic acid binding domain LNN31_11500 PF00152 tRNA synthetases class II (D, K and N) LNN31_11500 PF02938 GAD domain LNN31_11505 PF04055 Radical SAM superfamily LNN31_11510 PF00753 Metallo-beta-lactamase superfamily LNN31_11515 PF02580 D-Tyr-tRNA(Tyr) deacylase LNN31_11520 PF13291 ACT domain LNN31_11520 PF04607 Region found in RelA / SpoT proteins LNN31_11520 PF02824 TGS domain LNN31_11525 PF00156 Phosphoribosyl transferase domain LNN31_11530 PF01368 DHH family LNN31_11530 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LNN31_11530 PF17768 RecJ OB domain LNN31_11530 PF02272 DHHA1 domain LNN31_11535 PF02355 Protein export membrane protein LNN31_11535 PF07549 SecD/SecF GG Motif LNN31_11540 PF02355 Protein export membrane protein LNN31_11540 PF07549 SecD/SecF GG Motif LNN31_11545 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNN31_11550 PF08331 Domain of unknown function (DUF1730) LNN31_11555 PF01926 50S ribosome-binding GTPase LNN31_11560 PF02190 ATP-dependent protease La (LON) substrate-binding domain LNN31_11560 PF05362 Lon protease (S16) C-terminal proteolytic domain LNN31_11560 PF00004 ATPase family associated with various cellular activities (AAA) LNN31_11565 PF07724 AAA domain (Cdc48 subfamily) LNN31_11565 PF10431 C-terminal, D2-small domain, of ClpB protein LNN31_11565 PF06689 ClpX C4-type zinc finger LNN31_11570 PF00574 Clp protease LNN31_11575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNN31_11575 PF05698 Bacterial trigger factor protein (TF) C-terminus LNN31_11575 PF05697 Bacterial trigger factor protein (TF) LNN31_11580 PF00005 ABC transporter LNN31_11585 PF00005 ABC transporter LNN31_11585 PF12399 Branched-chain amino acid ATP-binding cassette transporter LNN31_11590 PF11862 Domain of unknown function (DUF3382) LNN31_11590 PF02653 Branched-chain amino acid transport system / permease component LNN31_11595 PF02653 Branched-chain amino acid transport system / permease component LNN31_11600 PF13458 Periplasmic binding protein LNN31_11605 PF00730 HhH-GPD superfamily base excision DNA repair protein LNN31_11605 PF00633 Helix-hairpin-helix motif LNN31_11610 PF07883 Cupin domain LNN31_11615 PF00912 Transglycosylase LNN31_11615 PF00905 Penicillin binding protein transpeptidase domain LNN31_11620 PF00849 RNA pseudouridylate synthase LNN31_11625 PF04060 Putative Fe-S cluster LNN31_11625 PF13187 4Fe-4S dicluster domain LNN31_11625 PF00037 4Fe-4S binding domain LNN31_11630 PF02508 Rnf-Nqr subunit, membrane protein LNN31_11635 PF02508 Rnf-Nqr subunit, membrane protein LNN31_11640 PF04205 FMN-binding domain LNN31_11645 PF03116 NQR2, RnfD, RnfE family LNN31_11650 PF10531 SLBB domain LNN31_11650 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNN31_11650 PF13237 4Fe-4S dicluster domain LNN31_11650 PF13375 RnfC Barrel sandwich hybrid domain LNN31_11655 PF02127 Aminopeptidase I zinc metalloprotease (M18) LNN31_11660 PF05979 Bacterial protein of unknown function (DUF896) LNN31_11665 PF06838 Methionine gamma-lyase LNN31_11675 PF08676 MutL C terminal dimerisation domain LNN31_11675 PF01119 DNA mismatch repair protein, C-terminal domain LNN31_11680 PF02190 ATP-dependent protease La (LON) substrate-binding domain LNN31_11680 PF05362 Lon protease (S16) C-terminal proteolytic domain LNN31_11680 PF00004 ATPase family associated with various cellular activities (AAA) LNN31_11685 PF01047 MarR family LNN31_11685 PF00583 Acetyltransferase (GNAT) family LNN31_11705 PF02447 GntP family permease LNN31_11715 PF13419 Haloacid dehalogenase-like hydrolase LNN31_11725 PF13393 Histidyl-tRNA synthetase LNN31_11730 PF01634 ATP phosphoribosyltransferase LNN31_11735 PF00815 Histidinol dehydrogenase LNN31_11740 PF00155 Aminotransferase class I and II LNN31_11745 PF00475 Imidazoleglycerol-phosphate dehydratase LNN31_11750 PF00117 Glutamine amidotransferase class-I LNN31_11755 PF00977 Histidine biosynthesis protein LNN31_11760 PF00977 Histidine biosynthesis protein LNN31_11765 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LNN31_11765 PF01502 Phosphoribosyl-AMP cyclohydrolase LNN31_11785 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain LNN31_11785 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 LNN31_11790 PF18419 ATP-grasp-like domain LNN31_11790 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LNN31_11790 PF04262 Glutamate-cysteine ligase LNN31_11805 PF07664 Ferrous iron transport protein B C terminus LNN31_11805 PF17910 FeoB cytosolic helical domain LNN31_11805 PF07670 Nucleoside recognition LNN31_11805 PF02421 Ferrous iron transport protein B LNN31_11810 PF04012 PspA/IM30 family LNN31_11820 PF04073 Aminoacyl-tRNA editing domain LNN31_11855 PF05188 MutS domain II LNN31_11855 PF00488 MutS domain V LNN31_11855 PF05190 MutS family domain IV LNN31_11855 PF01624 MutS domain I LNN31_11855 PF05192 MutS domain III LNN31_11860 PF00106 short chain dehydrogenase LNN31_11900 PF00563 EAL domain LNN31_11900 PF03707 Bacterial signalling protein N terminal repeat LNN31_11900 PF00990 Diguanylate cyclase, GGDEF domain LNN31_11910 PF02590 Predicted SPOUT methyltransferase LNN31_11915 PF01430 Hsp33 protein LNN31_11920 PF02446 4-alpha-glucanotransferase LNN31_11930 PF02653 Branched-chain amino acid transport system / permease component LNN31_11935 PF02653 Branched-chain amino acid transport system / permease component LNN31_11935 PF11862 Domain of unknown function (DUF3382) LNN31_11940 PF12399 Branched-chain amino acid ATP-binding cassette transporter LNN31_11940 PF00005 ABC transporter LNN31_11945 PF00005 ABC transporter LNN31_11950 PF02541 Ppx/GppA phosphatase family LNN31_11955 PF13089 Polyphosphate kinase N-terminal domain LNN31_11955 PF02503 Polyphosphate kinase middle domain LNN31_11955 PF13090 Polyphosphate kinase C-terminal domain 2 LNN31_11955 PF17941 Polyphosphate kinase C-terminal domain 1 LNN31_11965 PF04474 Protein of unknown function (DUF554) LNN31_11970 PF00301 Rubredoxin LNN31_11975 PF00480 ROK family LNN31_11985 PF02687 FtsX-like permease family LNN31_11985 PF12704 MacB-like periplasmic core domain LNN31_11995 PF00005 ABC transporter LNN31_12005 PF00005 ABC transporter LNN31_12010 PF00392 Bacterial regulatory proteins, gntR family LNN31_12015 PF02203 Tar ligand binding domain homologue LNN31_12015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_12015 PF00672 HAMP domain LNN31_12020 PF03109 ABC1 family LNN31_12030 PF13291 ACT domain LNN31_12030 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_12035 PF02525 Flavodoxin-like fold LNN31_12040 PF04015 Domain of unknown function (DUF362) LNN31_12045 PF00158 Sigma-54 interaction domain LNN31_12045 PF13426 PAS domain LNN31_12045 PF02954 Bacterial regulatory protein, Fis family LNN31_12050 PF03099 Biotin/lipoate A/B protein ligase family LNN31_12055 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNN31_12055 PF00364 Biotin-requiring enzyme LNN31_12055 PF02817 e3 binding domain LNN31_12065 PF02801 Beta-ketoacyl synthase, C-terminal domain LNN31_12065 PF00202 Aminotransferase class-III LNN31_12065 PF00501 AMP-binding enzyme LNN31_12065 PF00668 Condensation domain LNN31_12065 PF16197 Ketoacyl-synthetase C-terminal extension LNN31_12065 PF00109 Beta-ketoacyl synthase, N-terminal domain LNN31_12065 PF00550 Phosphopantetheine attachment site LNN31_12065 PF13193 AMP-binding enzyme C-terminal domain LNN31_12070 PF00731 AIR carboxylase LNN31_12075 PF01969 Protein of unknown function DUF111 LNN31_12080 PF17202 Single cache domain 3 LNN31_12080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_12080 PF00672 HAMP domain LNN31_12100 PF02540 NAD synthase LNN31_12105 PF00958 GMP synthase C terminal domain LNN31_12105 PF02540 NAD synthase LNN31_12105 PF00117 Glutamine amidotransferase class-I LNN31_12110 PF03180 NLPA lipoprotein LNN31_12115 PF00005 ABC transporter LNN31_12115 PF09383 NIL domain LNN31_12120 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_12125 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LNN31_12135 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LNN31_12135 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LNN31_12140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNN31_12145 PF14535 AMP-binding enzyme C-terminal domain LNN31_12145 PF00501 AMP-binding enzyme LNN31_12150 PF00155 Aminotransferase class I and II LNN31_12155 PF00155 Aminotransferase class I and II LNN31_12160 PF01053 Cys/Met metabolism PLP-dependent enzyme LNN31_12165 PF00899 ThiF family LNN31_12175 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_12180 PF01053 Cys/Met metabolism PLP-dependent enzyme LNN31_12185 PF01208 Uroporphyrinogen decarboxylase (URO-D) LNN31_12190 PF01053 Cys/Met metabolism PLP-dependent enzyme LNN31_12200 PF01208 Uroporphyrinogen decarboxylase (URO-D) LNN31_12210 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNN31_12210 PF07683 Cobalamin synthesis protein cobW C-terminal domain LNN31_12215 PF01208 Uroporphyrinogen decarboxylase (URO-D) LNN31_12220 PF02310 B12 binding domain LNN31_12220 PF02607 B12 binding domain LNN31_12225 PF02082 Transcriptional regulator LNN31_12230 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_12235 PF00266 Aminotransferase class-V LNN31_12245 PF13478 XdhC Rossmann domain LNN31_12245 PF02625 XdhC and CoxI family LNN31_12250 PF00158 Sigma-54 interaction domain LNN31_12250 PF13426 PAS domain LNN31_12250 PF02954 Bacterial regulatory protein, Fis family LNN31_12260 PF00483 Nucleotidyl transferase LNN31_12260 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_12265 PF02625 XdhC and CoxI family LNN31_12265 PF13478 XdhC Rossmann domain LNN31_12270 PF14535 AMP-binding enzyme C-terminal domain LNN31_12270 PF00501 AMP-binding enzyme LNN31_12275 PF13186 Iron-sulfur cluster-binding domain LNN31_12275 PF04055 Radical SAM superfamily LNN31_12285 PF13847 Methyltransferase domain LNN31_12295 PF01593 Flavin containing amine oxidoreductase LNN31_12300 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LNN31_12300 PF00111 2Fe-2S iron-sulfur cluster binding domain LNN31_12300 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LNN31_12300 PF01799 [2Fe-2S] binding domain LNN31_12310 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 LNN31_12345 PF00563 EAL domain LNN31_12345 PF13426 PAS domain LNN31_12345 PF08448 PAS fold LNN31_12345 PF08447 PAS fold LNN31_12345 PF00990 Diguanylate cyclase, GGDEF domain LNN31_12345 PF05231 MASE1 LNN31_12355 PF01966 HD domain LNN31_12355 PF11871 Domain of unknown function (DUF3391) LNN31_12360 PF00072 Response regulator receiver domain LNN31_12360 PF00486 Transcriptional regulatory protein, C terminal LNN31_12365 PF00512 His Kinase A (phospho-acceptor) domain LNN31_12365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_12365 PF09308 LuxQ, periplasmic LNN31_12365 PF00072 Response regulator receiver domain LNN31_12370 PF03975 CheD chemotactic sensory transduction LNN31_12375 PF00072 Response regulator receiver domain LNN31_12375 PF01339 CheB methylesterase LNN31_12380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_12380 PF02203 Tar ligand binding domain homologue LNN31_12380 PF00672 HAMP domain LNN31_12385 PF01584 CheW-like domain LNN31_12390 PF07194 P2 response regulator binding domain LNN31_12390 PF01627 Hpt domain LNN31_12390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_12390 PF02895 Signal transducing histidine kinase, homodimeric domain LNN31_12390 PF01584 CheW-like domain LNN31_12395 PF00440 Bacterial regulatory proteins, tetR family LNN31_12415 PF01268 Formate--tetrahydrofolate ligase LNN31_12420 PF00939 Sodium:sulfate symporter transmembrane region LNN31_12430 PF02310 B12 binding domain LNN31_12430 PF02607 B12 binding domain LNN31_12445 PF06733 DEAD_2 LNN31_12445 PF13307 Helicase C-terminal domain LNN31_12450 PF11756 Nitrous oxide-stimulated promoter LNN31_12460 PF11799 impB/mucB/samB family C-terminal domain LNN31_12460 PF00817 impB/mucB/samB family LNN31_12475 PF01869 BadF/BadG/BcrA/BcrD ATPase family LNN31_12480 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component LNN31_12515 PF01966 HD domain LNN31_12515 PF00072 Response regulator receiver domain LNN31_12525 PF12706 Beta-lactamase superfamily domain LNN31_12585 PF01695 IstB-like ATP binding protein LNN31_12595 PF02796 Helix-turn-helix domain of resolvase LNN31_12595 PF00665 Integrase core domain LNN31_12600 PF01695 IstB-like ATP binding protein LNN31_12605 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_12605 PF00589 Phage integrase family LNN31_12610 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_12610 PF00589 Phage integrase family LNN31_12615 PF00589 Phage integrase family LNN31_12615 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_12630 PF01867 CRISPR associated protein Cas1 LNN31_12745 PF03050 Transposase IS66 family LNN31_12745 PF13817 IS66 C-terminal element LNN31_12745 PF13007 Transposase C of IS166 homeodomain LNN31_12745 PF13005 zinc-finger binding domain of transposase IS66 LNN31_12785 PF01032 FecCD transport family LNN31_12790 PF00005 ABC transporter LNN31_12800 PF07722 Peptidase C26 LNN31_12810 PF00293 NUDIX domain LNN31_12815 PF01880 Desulfoferrodoxin LNN31_12820 PF01183 Glycosyl hydrolases family 25 LNN31_12825 PF02540 NAD synthase LNN31_12830 PF00005 ABC transporter LNN31_12830 PF00664 ABC transporter transmembrane region LNN31_12835 PF01145 SPFH domain / Band 7 family LNN31_12845 PF01964 Radical SAM ThiC family LNN31_12850 PF01964 Radical SAM ThiC family LNN31_12855 PF02277 Phosphoribosyltransferase LNN31_12860 PF05175 Methyltransferase small domain LNN31_12860 PF17827 PrmC N-terminal domain LNN31_12870 PF02310 B12 binding domain LNN31_12870 PF04055 Radical SAM superfamily LNN31_12875 PF00571 CBS domain LNN31_12875 PF01595 Cyclin M transmembrane N-terminal domain LNN31_12875 PF03471 Transporter associated domain LNN31_12880 PF05651 Putative sugar diacid recognition LNN31_12880 PF17853 GGDEF-like domain LNN31_12880 PF13556 PucR C-terminal helix-turn-helix domain LNN31_12885 PF02595 Glycerate kinase family LNN31_12890 PF00561 alpha/beta hydrolase fold LNN31_12895 PF05816 Toxic anion resistance protein (TelA) LNN31_12905 PF00005 ABC transporter LNN31_12910 PF02361 Cobalt transport protein LNN31_12915 PF13190 PDGLE domain LNN31_12915 PF01891 Cobalt uptake substrate-specific transmembrane region LNN31_12920 PF07943 Penicillin-binding protein 5, C-terminal domain LNN31_12920 PF00768 D-alanyl-D-alanine carboxypeptidase LNN31_12925 PF08367 Peptidase M16C associated LNN31_12925 PF00675 Insulinase (Peptidase family M16) LNN31_12925 PF05193 Peptidase M16 inactive domain LNN31_12930 PF12002 MgsA AAA+ ATPase C terminal LNN31_12930 PF16193 AAA C-terminal domain LNN31_12930 PF05496 Holliday junction DNA helicase RuvB P-loop domain LNN31_12955 PF00392 Bacterial regulatory proteins, gntR family LNN31_12965 PF02310 B12 binding domain LNN31_12965 PF02607 B12 binding domain LNN31_12980 PF02028 BCCT, betaine/carnitine/choline family transporter LNN31_12990 PF02310 B12 binding domain LNN31_12990 PF02607 B12 binding domain LNN31_13005 PF00464 Serine hydroxymethyltransferase LNN31_13020 PF01967 MoaC family LNN31_13025 PF06463 Molybdenum Cofactor Synthesis C LNN31_13025 PF04055 Radical SAM superfamily LNN31_13030 PF12728 Helix-turn-helix domain LNN31_13030 PF12727 PBP superfamily domain LNN31_13035 PF00994 Probable molybdopterin binding domain LNN31_13035 PF03454 MoeA C-terminal region (domain IV) LNN31_13035 PF03453 MoeA N-terminal region (domain I and II) LNN31_13040 PF00899 ThiF family LNN31_13045 PF00994 Probable molybdopterin binding domain LNN31_13055 PF00462 Glutaredoxin LNN31_13065 PF13520 Amino acid permease LNN31_13085 PF12849 PBP superfamily domain LNN31_13090 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_13095 PF00005 ABC transporter LNN31_13100 PF01966 HD domain LNN31_13100 PF11871 Domain of unknown function (DUF3391) LNN31_13105 PF08402 TOBE domain LNN31_13105 PF00005 ABC transporter LNN31_13110 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_13115 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_13120 PF13416 Bacterial extracellular solute-binding protein LNN31_13125 PF00999 Sodium/hydrogen exchanger family LNN31_13150 PF00990 Diguanylate cyclase, GGDEF domain LNN31_13150 PF03707 Bacterial signalling protein N terminal repeat LNN31_13150 PF00563 EAL domain LNN31_13155 PF00596 Class II Aldolase and Adducin N-terminal domain LNN31_13160 PF00672 HAMP domain LNN31_13160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_13160 PF02203 Tar ligand binding domain homologue LNN31_13165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNN31_13165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNN31_13165 PF00205 Thiamine pyrophosphate enzyme, central domain LNN31_13170 PF00920 Dehydratase family LNN31_13175 PF00180 Isocitrate/isopropylmalate dehydrogenase LNN31_13180 PF08502 LeuA allosteric (dimerisation) domain LNN31_13180 PF00682 HMGL-like LNN31_13185 PF00682 HMGL-like LNN31_13185 PF08502 LeuA allosteric (dimerisation) domain LNN31_13190 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LNN31_13190 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LNN31_13200 PF14437 MafB19-like deaminase LNN31_13205 PF02872 5'-nucleotidase, C-terminal domain LNN31_13205 PF00149 Calcineurin-like phosphoesterase LNN31_13210 PF12822 ECF transporter, substrate-specific component LNN31_13215 PF04127 DNA / pantothenate metabolism flavoprotein LNN31_13215 PF02441 Flavoprotein LNN31_13235 PF02350 UDP-N-acetylglucosamine 2-epimerase LNN31_13265 PF01458 Uncharacterized protein family (UPF0051) LNN31_13270 PF00005 ABC transporter LNN31_13270 PF08402 TOBE domain LNN31_13275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_13275 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_13280 PF00581 Rhodanese-like domain LNN31_13280 PF12368 Rhodanase C-terminal LNN31_13280 PF17773 UPF0176 acylphosphatase like domain LNN31_13285 PF16363 GDP-mannose 4,6 dehydratase LNN31_13290 PF00391 PEP-utilising enzyme, mobile domain LNN31_13290 PF02896 PEP-utilising enzyme, TIM barrel domain LNN31_13290 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LNN31_13295 PF03618 Kinase/pyrophosphorylase LNN31_13300 PF00571 CBS domain LNN31_13300 PF08279 HTH domain LNN31_13305 PF10531 SLBB domain LNN31_13315 PF00005 ABC transporter LNN31_13320 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_13325 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNN31_13335 PF10437 Bacterial lipoate protein ligase C-terminus LNN31_13335 PF03099 Biotin/lipoate A/B protein ligase family LNN31_13340 PF00356 Bacterial regulatory proteins, lacI family LNN31_13350 PF05681 Fumarate hydratase (Fumerase) LNN31_13350 PF05683 Fumarase C-terminus LNN31_13355 PF05681 Fumarate hydratase (Fumerase) LNN31_13365 PF00588 SpoU rRNA Methylase family LNN31_13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_13370 PF00512 His Kinase A (phospho-acceptor) domain LNN31_13375 PF00072 Response regulator receiver domain LNN31_13375 PF00486 Transcriptional regulatory protein, C terminal LNN31_13380 PF00072 Response regulator receiver domain LNN31_13380 PF00486 Transcriptional regulatory protein, C terminal LNN31_13385 PF00512 His Kinase A (phospho-acceptor) domain LNN31_13385 PF18719 ArlS sensor domain LNN31_13385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_13390 PF00202 Aminotransferase class-III LNN31_13395 PF00696 Amino acid kinase family LNN31_13400 PF01960 ArgJ family LNN31_13405 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNN31_13405 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNN31_13410 PF00764 Arginosuccinate synthase LNN31_13415 PF00206 Lyase LNN31_13415 PF14698 Argininosuccinate lyase C-terminal LNN31_13435 PF01078 Magnesium chelatase, subunit ChlI LNN31_13435 PF13335 Magnesium chelatase, subunit ChlI C-terminal LNN31_13655 PF17288 Terminase RNAseH like domain LNN31_13655 PF04466 Phage terminase large subunit LNN31_13760 PF01555 DNA methylase LNN31_13790 PF00436 Single-strand binding protein family LNN31_13805 PF03837 RecT family LNN31_13850 PF02498 BRO family, N-terminal domain LNN31_13850 PF10548 P22AR C-terminal domain LNN31_13860 PF01381 Helix-turn-helix LNN31_13880 PF02796 Helix-turn-helix domain of resolvase LNN31_13880 PF00239 Resolvase, N terminal domain LNN31_13885 PF13335 Magnesium chelatase, subunit ChlI C-terminal LNN31_13885 PF01078 Magnesium chelatase, subunit ChlI LNN31_13890 PF01790 Prolipoprotein diacylglyceryl transferase LNN31_13895 PF06130 Phosphate propanoyltransferase LNN31_13900 PF02463 RecF/RecN/SMC N terminal domain LNN31_13905 PF01316 Arginine repressor, DNA binding domain LNN31_13905 PF02863 Arginine repressor, C-terminal domain LNN31_13910 PF01513 ATP-NAD kinase LNN31_13915 PF01479 S4 domain LNN31_13915 PF01728 FtsJ-like methyltransferase LNN31_13920 PF00348 Polyprenyl synthetase LNN31_13925 PF02609 Exonuclease VII small subunit LNN31_13930 PF13742 OB-fold nucleic acid binding domain LNN31_13930 PF02601 Exonuclease VII, large subunit LNN31_13935 PF00814 Glycoprotease family LNN31_13940 PF01029 NusB family LNN31_13955 PF09285 Elongation factor P, C-terminal LNN31_13955 PF01132 Elongation factor P (EF-P) OB domain LNN31_13955 PF08207 Elongation factor P (EF-P) KOW-like domain LNN31_13960 PF05175 Methyltransferase small domain LNN31_13960 PF17827 PrmC N-terminal domain LNN31_13965 PF01197 Ribosomal protein L31 LNN31_13970 PF07497 Rho termination factor, RNA-binding domain LNN31_13970 PF07498 Rho termination factor, N-terminal domain LNN31_13970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNN31_13995 PF02547 Queuosine biosynthesis protein LNN31_14000 PF05496 Holliday junction DNA helicase RuvB P-loop domain LNN31_14000 PF05491 RuvB C-terminal winged helix domain LNN31_14000 PF17864 RuvB AAA lid domain LNN31_14005 PF01330 RuvA N terminal domain LNN31_14005 PF07499 RuvA, C-terminal domain LNN31_14015 PF18073 Rubredoxin metal binding domain LNN31_14025 PF09186 Domain of unknown function (DUF1949) LNN31_14025 PF01205 Uncharacterized protein family UPF0029 LNN31_14030 PF01926 50S ribosome-binding GTPase LNN31_14030 PF13167 GTP-binding GTPase N-terminal LNN31_14030 PF16360 GTP-binding GTPase Middle Region LNN31_14070 PF04986 Putative transposase LNN31_14070 PF14319 Transposase zinc-binding domain LNN31_14075 PF00872 Transposase, Mutator family LNN31_14080 PF02568 Thiamine biosynthesis protein (ThiI) LNN31_14080 PF02926 THUMP domain LNN31_14085 PF00266 Aminotransferase class-V LNN31_14090 PF00692 dUTPase LNN31_14095 PF00488 MutS domain V LNN31_14095 PF01713 Smr domain LNN31_14100 PF01136 Peptidase family U32 LNN31_14100 PF12392 Collagenase LNN31_14105 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LNN31_14105 PF03033 Glycosyltransferase family 28 N-terminal domain LNN31_14120 PF02773 S-adenosylmethionine synthetase, C-terminal domain LNN31_14120 PF02772 S-adenosylmethionine synthetase, central domain LNN31_14120 PF00438 S-adenosylmethionine synthetase, N-terminal domain LNN31_14125 PF05195 Aminopeptidase P, N-terminal domain LNN31_14125 PF00557 Metallopeptidase family M24 LNN31_14135 PF01171 PP-loop family LNN31_14140 PF00072 Response regulator receiver domain LNN31_14140 PF00486 Transcriptional regulatory protein, C terminal LNN31_14145 PF00672 HAMP domain LNN31_14145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_14145 PF00512 His Kinase A (phospho-acceptor) domain LNN31_14145 PF13426 PAS domain LNN31_14155 PF02887 Pyruvate kinase, alpha/beta domain LNN31_14155 PF00391 PEP-utilising enzyme, mobile domain LNN31_14155 PF00224 Pyruvate kinase, barrel domain LNN31_14160 PF00365 Phosphofructokinase LNN31_14165 PF02811 PHP domain LNN31_14165 PF01336 OB-fold nucleic acid binding domain LNN31_14165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LNN31_14165 PF07733 Bacterial DNA polymerase III alpha NTPase domain LNN31_14165 PF14579 Helix-hairpin-helix motif LNN31_14170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNN31_14170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNN31_14175 PF04309 Glycerol-3-phosphate responsive antiterminator LNN31_14180 PF04324 BFD-like [2Fe-2S] binding domain LNN31_14180 PF01266 FAD dependent oxidoreductase LNN31_14185 PF04324 BFD-like [2Fe-2S] binding domain LNN31_14185 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_14205 PF03062 MBOAT, membrane-bound O-acyltransferase family LNN31_14215 PF07702 UTRA domain LNN31_14215 PF00392 Bacterial regulatory proteins, gntR family LNN31_14220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNN31_14220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNN31_14225 PF01791 DeoC/LacD family aldolase LNN31_14230 PF13419 Haloacid dehalogenase-like hydrolase LNN31_14235 PF02811 PHP domain LNN31_14245 PF04324 BFD-like [2Fe-2S] binding domain LNN31_14245 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_14250 PF01266 FAD dependent oxidoreductase LNN31_14255 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNN31_14255 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNN31_14260 PF10437 Bacterial lipoate protein ligase C-terminus LNN31_14260 PF03099 Biotin/lipoate A/B protein ligase family LNN31_14265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_14265 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_14270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNN31_14270 PF02817 e3 binding domain LNN31_14270 PF00364 Biotin-requiring enzyme LNN31_14275 PF00364 Biotin-requiring enzyme LNN31_14275 PF02779 Transketolase, pyrimidine binding domain LNN31_14275 PF02780 Transketolase, C-terminal domain LNN31_14280 PF00676 Dehydrogenase E1 component LNN31_14285 PF01116 Fructose-bisphosphate aldolase class-II LNN31_14295 PF02780 Transketolase, C-terminal domain LNN31_14295 PF02779 Transketolase, pyrimidine binding domain LNN31_14300 PF00456 Transketolase, thiamine diphosphate binding domain LNN31_14330 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LNN31_14330 PF01348 Type II intron maturase LNN31_14360 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LNN31_14375 PF07155 ECF-type riboflavin transporter, S component LNN31_14380 PF01116 Fructose-bisphosphate aldolase class-II LNN31_14385 PF01479 S4 domain LNN31_14385 PF00849 RNA pseudouridylate synthase LNN31_14390 PF03838 Recombination protein U LNN31_14395 PF02664 S-Ribosylhomocysteinase (LuxS) LNN31_14405 PF02511 Thymidylate synthase complementing protein LNN31_14415 PF07690 Major Facilitator Superfamily LNN31_14420 PF01144 Coenzyme A transferase LNN31_14425 PF01144 Coenzyme A transferase LNN31_14445 PF01227 GTP cyclohydrolase I LNN31_14450 PF01966 HD domain LNN31_14455 PF00809 Pterin binding enzyme LNN31_14460 PF02152 Dihydroneopterin aldolase LNN31_14460 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LNN31_14470 PF03129 Anticodon binding domain LNN31_14470 PF09180 Prolyl-tRNA synthetase, C-terminal LNN31_14470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNN31_14475 PF16320 Ribosomal protein L7/L12 dimerisation domain LNN31_14475 PF00542 Ribosomal protein L7/L12 C-terminal domain LNN31_14480 PF00466 Ribosomal protein L10 LNN31_14485 PF00687 Ribosomal protein L1p/L10e family LNN31_14490 PF00298 Ribosomal protein L11, RNA binding domain LNN31_14490 PF03946 Ribosomal protein L11, N-terminal domain LNN31_14495 PF00467 KOW motif LNN31_14495 PF02357 Transcription termination factor nusG LNN31_14505 PF00471 Ribosomal protein L33 LNN31_14510 PF00583 Acetyltransferase (GNAT) family LNN31_14525 PF02557 D-alanyl-D-alanine carboxypeptidase LNN31_14550 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit LNN31_14550 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain LNN31_14555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNN31_14560 PF03063 Prismane/CO dehydrogenase family LNN31_14570 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit LNN31_14570 PF04060 Putative Fe-S cluster LNN31_14575 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit LNN31_14590 PF00970 Oxidoreductase FAD-binding domain LNN31_14590 PF00111 2Fe-2S iron-sulfur cluster binding domain LNN31_14590 PF00175 Oxidoreductase NAD-binding domain LNN31_14595 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNN31_14605 PF00027 Cyclic nucleotide-binding domain LNN31_14605 PF13545 Crp-like helix-turn-helix domain LNN31_14615 PF00005 ABC transporter LNN31_14620 PF01032 FecCD transport family LNN31_14630 PF01209 ubiE/COQ5 methyltransferase family LNN31_14640 PF00005 ABC transporter LNN31_14645 PF01032 FecCD transport family LNN31_14660 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family LNN31_14665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_14665 PF03466 LysR substrate binding domain LNN31_14670 PF01209 ubiE/COQ5 methyltransferase family LNN31_14680 PF10609 NUBPL iron-transfer P-loop NTPase LNN31_14685 PF02001 Protein of unknown function DUF134 LNN31_14740 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LNN31_14740 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LNN31_14750 PF08402 TOBE domain LNN31_14750 PF00005 ABC transporter LNN31_14755 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_14765 PF03459 TOBE domain LNN31_14775 PF10662 Ethanolamine utilisation - propanediol utilisation LNN31_14785 PF01891 Cobalt uptake substrate-specific transmembrane region LNN31_14790 PF00005 ABC transporter LNN31_14795 PF02361 Cobalt transport protein LNN31_14800 PF02571 Precorrin-6x reductase CbiJ/CobK LNN31_14805 PF01648 4'-phosphopantetheinyl transferase superfamily LNN31_14815 PF01641 SelR domain LNN31_14820 PF03190 Protein of unknown function, DUF255 LNN31_14830 PF00005 ABC transporter LNN31_14845 PF00005 ABC transporter LNN31_14850 PF00392 Bacterial regulatory proteins, gntR family LNN31_14860 PF13175 AAA ATPase domain LNN31_14865 PF00149 Calcineurin-like phosphoesterase LNN31_14865 PF12320 Type 5 capsule protein repressor C-terminal domain LNN31_14895 PF04397 LytTr DNA-binding domain LNN31_14895 PF00072 Response regulator receiver domain LNN31_14905 PF00999 Sodium/hydrogen exchanger family LNN31_14910 PF01136 Peptidase family U32 LNN31_14910 PF16325 Peptidase family U32 C-terminal domain LNN31_14915 PF01596 O-methyltransferase LNN31_14920 PF02618 YceG-like family LNN31_14925 PF06133 Control of competence regulator ComK, YlbF/YmcA LNN31_14930 PF00753 Metallo-beta-lactamase superfamily LNN31_14930 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LNN31_14930 PF17770 Ribonuclease J C-terminal domain LNN31_14935 PF01475 Ferric uptake regulator family LNN31_14940 PF03749 Sugar fermentation stimulation protein RE domain LNN31_14940 PF17746 SfsA N-terminal OB domain LNN31_14945 PF06949 Protein of unknown function (DUF1292) LNN31_14950 PF03652 Holliday junction resolvase LNN31_14955 PF00248 Aldo/keto reductase family LNN31_14960 PF06135 IreB regulatory phosphoprotein LNN31_14965 PF01411 tRNA synthetases class II (A) LNN31_14965 PF02272 DHHA1 domain LNN31_14965 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNN31_14970 PF01594 AI-2E family transporter LNN31_14980 PF03306 Alpha-acetolactate decarboxylase LNN31_14985 PF01592 NifU-like N terminal domain LNN31_14990 PF00266 Aminotransferase class-V LNN31_14995 PF02082 Transcriptional regulator LNN31_15000 PF02401 LytB protein LNN31_15000 PF00575 S1 RNA binding domain LNN31_15005 PF01553 Acyltransferase LNN31_15010 PF02224 Cytidylate kinase LNN31_15020 PF01380 SIS domain LNN31_15020 PF01418 Helix-turn-helix domain, rpiR family LNN31_15035 PF00849 RNA pseudouridylate synthase LNN31_15035 PF01479 S4 domain LNN31_15040 PF04079 Segregation and condensation complex subunit ScpB LNN31_15045 PF02616 Segregation and condensation protein ScpA LNN31_15050 PF02163 Peptidase family M50 LNN31_15055 PF00293 NUDIX domain LNN31_15060 PF03477 ATP cone domain LNN31_15065 PF12327 FtsZ family, C-terminal domain LNN31_15065 PF00091 Tubulin/FtsZ family, GTPase domain LNN31_15070 PF08478 POTRA domain, FtsQ-type LNN31_15070 PF03799 Cell division protein FtsQ LNN31_15075 PF04101 Glycosyltransferase family 28 C-terminal domain LNN31_15075 PF03033 Glycosyltransferase family 28 N-terminal domain LNN31_15080 PF01098 Cell cycle protein LNN31_15085 PF02875 Mur ligase family, glutamate ligase domain LNN31_15085 PF08245 Mur ligase middle domain LNN31_15090 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LNN31_15090 PF00953 Glycosyl transferase family 4 LNN31_15095 PF08245 Mur ligase middle domain LNN31_15095 PF02875 Mur ligase family, glutamate ligase domain LNN31_15095 PF01225 Mur ligase family, catalytic domain LNN31_15100 PF00905 Penicillin binding protein transpeptidase domain LNN31_15100 PF03793 PASTA domain LNN31_15100 PF03717 Penicillin-binding Protein dimerisation domain LNN31_15110 PF01795 MraW methylase family LNN31_15115 PF02381 MraZ protein, putative antitoxin-like LNN31_15125 PF05167 Uncharacterised ACR (DUF711) LNN31_15145 PF13556 PucR C-terminal helix-turn-helix domain LNN31_15145 PF17853 GGDEF-like domain LNN31_15145 PF05651 Putative sugar diacid recognition LNN31_15150 PF02146 Sir2 family LNN31_15180 PF00665 Integrase core domain LNN31_15200 PF01695 IstB-like ATP binding protein LNN31_15210 PF00665 Integrase core domain LNN31_15215 PF01695 IstB-like ATP binding protein LNN31_15240 PF02203 Tar ligand binding domain homologue LNN31_15240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_15240 PF00672 HAMP domain LNN31_15250 PF14437 MafB19-like deaminase LNN31_15260 PF00665 Integrase core domain LNN31_15260 PF02796 Helix-turn-helix domain of resolvase LNN31_15265 PF01695 IstB-like ATP binding protein LNN31_15270 PF01336 OB-fold nucleic acid binding domain LNN31_15270 PF00152 tRNA synthetases class II (D, K and N) LNN31_15275 PF01272 Transcription elongation factor, GreA/GreB, C-term LNN31_15275 PF03449 Transcription elongation factor, N-terminal LNN31_15280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNN31_15280 PF02403 Seryl-tRNA synthetase N-terminal domain LNN31_15285 PF03699 Uncharacterised protein family (UPF0182) LNN31_15290 PF01427 D-ala-D-ala dipeptidase LNN31_15295 PF00005 ABC transporter LNN31_15300 PF02687 FtsX-like permease family LNN31_15300 PF12704 MacB-like periplasmic core domain LNN31_15300 PF00005 ABC transporter LNN31_15325 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNN31_15325 PF13237 4Fe-4S dicluster domain LNN31_15325 PF10531 SLBB domain LNN31_15325 PF13375 RnfC Barrel sandwich hybrid domain LNN31_15330 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LNN31_15330 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LNN31_15335 PF04961 Formiminotransferase-cyclodeaminase LNN31_15340 PF01268 Formate--tetrahydrofolate ligase LNN31_15350 PF00710 Asparaginase, N-terminal LNN31_15350 PF17763 Glutaminase/Asparaginase C-terminal domain LNN31_15355 PF04324 BFD-like [2Fe-2S] binding domain LNN31_15355 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_15370 PF02607 B12 binding domain LNN31_15370 PF02310 B12 binding domain LNN31_15375 PF00939 Sodium:sulfate symporter transmembrane region LNN31_15395 PF03143 Elongation factor Tu C-terminal domain LNN31_15395 PF00009 Elongation factor Tu GTP binding domain LNN31_15395 PF03144 Elongation factor Tu domain 2 LNN31_15400 PF03144 Elongation factor Tu domain 2 LNN31_15400 PF00009 Elongation factor Tu GTP binding domain LNN31_15400 PF03764 Elongation factor G, domain IV LNN31_15400 PF14492 Elongation Factor G, domain II LNN31_15400 PF00679 Elongation factor G C-terminus LNN31_15405 PF00177 Ribosomal protein S7p/S5e LNN31_15410 PF00164 Ribosomal protein S12/S23 LNN31_15415 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LNN31_15420 PF04997 RNA polymerase Rpb1, domain 1 LNN31_15420 PF00623 RNA polymerase Rpb1, domain 2 LNN31_15420 PF04983 RNA polymerase Rpb1, domain 3 LNN31_15420 PF05000 RNA polymerase Rpb1, domain 4 LNN31_15420 PF04998 RNA polymerase Rpb1, domain 5 LNN31_15425 PF04563 RNA polymerase beta subunit LNN31_15425 PF04561 RNA polymerase Rpb2, domain 2 LNN31_15425 PF04565 RNA polymerase Rpb2, domain 3 LNN31_15425 PF10385 RNA polymerase beta subunit external 1 domain LNN31_15425 PF00562 RNA polymerase Rpb2, domain 6 LNN31_15425 PF04560 RNA polymerase Rpb2, domain 7 LNN31_15430 PF00005 ABC transporter LNN31_15435 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_15440 PF00497 Bacterial extracellular solute-binding proteins, family 3 LNN31_15445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNN31_15445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNN31_15450 PF07969 Amidohydrolase family LNN31_15465 PF02734 DAK2 domain LNN31_15470 PF02733 Dak1 domain LNN31_15475 PF03610 PTS system fructose IIA component LNN31_15480 PF02954 Bacterial regulatory protein, Fis family LNN31_15480 PF00989 PAS fold LNN31_15480 PF00158 Sigma-54 interaction domain LNN31_15485 PF02502 Ribose/Galactose Isomerase LNN31_15490 PF00121 Triosephosphate isomerase LNN31_15500 PF00990 Diguanylate cyclase, GGDEF domain LNN31_15500 PF00072 Response regulator receiver domain LNN31_15515 PF01695 IstB-like ATP binding protein LNN31_15520 PF00665 Integrase core domain LNN31_15570 PF08000 Bacterial PH domain LNN31_15585 PF01420 Type I restriction modification DNA specificity domain LNN31_15590 PF02384 N-6 DNA Methylase LNN31_15595 PF08463 EcoEI R protein C-terminal LNN31_15595 PF00271 Helicase conserved C-terminal domain LNN31_15595 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LNN31_15595 PF04851 Type III restriction enzyme, res subunit LNN31_15610 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LNN31_15620 PF09861 Lactate racemase N-terminal domain LNN31_15625 PF02652 L-lactate permease LNN31_15630 PF02913 FAD linked oxidases, C-terminal domain LNN31_15630 PF01565 FAD binding domain LNN31_15635 PF01012 Electron transfer flavoprotein domain LNN31_15635 PF00766 Electron transfer flavoprotein FAD-binding domain LNN31_15640 PF01012 Electron transfer flavoprotein domain LNN31_15645 PF07729 FCD domain LNN31_15645 PF00392 Bacterial regulatory proteins, gntR family LNN31_15650 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNN31_15650 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNN31_15650 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNN31_15650 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNN31_15655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNN31_15655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNN31_15665 PF06257 Biofilm formation stimulator VEG LNN31_15670 PF13419 Haloacid dehalogenase-like hydrolase LNN31_15680 PF00800 Prephenate dehydratase LNN31_15680 PF01817 Chorismate mutase type II LNN31_15685 PF00133 tRNA synthetases class I (I, L, M and V) LNN31_15685 PF08264 Anticodon-binding domain of tRNA LNN31_15700 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_15705 PF16326 ABC transporter C-terminal domain LNN31_15705 PF00005 ABC transporter LNN31_15705 PF12848 ABC transporter LNN31_15710 PF01225 Mur ligase family, catalytic domain LNN31_15710 PF02875 Mur ligase family, glutamate ligase domain LNN31_15710 PF08245 Mur ligase middle domain LNN31_15720 PF00392 Bacterial regulatory proteins, gntR family LNN31_15720 PF07702 UTRA domain LNN31_15725 PF02607 B12 binding domain LNN31_15725 PF02310 B12 binding domain LNN31_15730 PF01226 Formate/nitrite transporter LNN31_15735 PF02607 B12 binding domain LNN31_15735 PF02310 B12 binding domain LNN31_15740 PF00403 Heavy-metal-associated domain LNN31_15745 PF01022 Bacterial regulatory protein, arsR family LNN31_15760 PF01261 Xylose isomerase-like TIM barrel LNN31_15765 PF02535 ZIP Zinc transporter LNN31_15775 PF00365 Phosphofructokinase LNN31_15800 PF13495 Phage integrase, N-terminal SAM-like domain LNN31_15800 PF00589 Phage integrase family LNN31_15820 PF07702 UTRA domain LNN31_15820 PF00392 Bacterial regulatory proteins, gntR family LNN31_15825 PF02310 B12 binding domain LNN31_15825 PF02607 B12 binding domain LNN31_15830 PF06874 Firmicute fructose-1,6-bisphosphatase LNN31_15835 PF01226 Formate/nitrite transporter LNN31_15840 PF01268 Formate--tetrahydrofolate ligase LNN31_15850 PF01966 HD domain LNN31_15850 PF01336 OB-fold nucleic acid binding domain LNN31_15855 PF00155 Aminotransferase class I and II LNN31_15890 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family LNN31_15895 PF00543 Nitrogen regulatory protein P-II LNN31_15900 PF00543 Nitrogen regulatory protein P-II LNN31_15905 PF00148 Nitrogenase component 1 type Oxidoreductase LNN31_15910 PF00148 Nitrogenase component 1 type Oxidoreductase LNN31_15915 PF00148 Nitrogenase component 1 type Oxidoreductase LNN31_15920 PF02579 Dinitrogenase iron-molybdenum cofactor LNN31_15920 PF04055 Radical SAM superfamily LNN31_15935 PF00682 HMGL-like LNN31_15940 PF00381 PTS HPr component phosphorylation site LNN31_15945 PF13344 Haloacid dehalogenase-like hydrolase LNN31_15950 PF13936 Helix-turn-helix domain LNN31_15950 PF04198 Putative sugar-binding domain LNN31_15955 PF00543 Nitrogen regulatory protein P-II LNN31_15960 PF00909 Ammonium Transporter Family LNN31_15965 PF00543 Nitrogen regulatory protein P-II LNN31_15970 PF00909 Ammonium Transporter Family LNN31_15975 PF13180 PDZ domain LNN31_15975 PF17820 PDZ domain LNN31_15980 PF00753 Metallo-beta-lactamase superfamily LNN31_15985 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNN31_15995 PF01695 IstB-like ATP binding protein LNN31_16005 PF05175 Methyltransferase small domain LNN31_16020 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_16030 PF17773 UPF0176 acylphosphatase like domain LNN31_16030 PF00581 Rhodanese-like domain LNN31_16035 PF00486 Transcriptional regulatory protein, C terminal LNN31_16035 PF00072 Response regulator receiver domain LNN31_16040 PF00512 His Kinase A (phospho-acceptor) domain LNN31_16040 PF00989 PAS fold LNN31_16040 PF18698 Histidine kinase sensor domain LNN31_16040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_16040 PF00672 HAMP domain LNN31_16065 PF00672 HAMP domain LNN31_16065 PF02203 Tar ligand binding domain homologue LNN31_16065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_16070 PF02028 BCCT, betaine/carnitine/choline family transporter LNN31_16075 PF02607 B12 binding domain LNN31_16075 PF02310 B12 binding domain LNN31_16080 PF06253 Trimethylamine methyltransferase (MTTB) LNN31_16085 PF02028 BCCT, betaine/carnitine/choline family transporter LNN31_16090 PF02007 Tetrahydromethanopterin S-methyltransferase MtrH subunit LNN31_16095 PF00158 Sigma-54 interaction domain LNN31_16105 PF00082 Subtilase family LNN31_16115 PF01384 Phosphate transporter family LNN31_16130 PF02607 B12 binding domain LNN31_16130 PF02310 B12 binding domain LNN31_16140 PF00310 Glutamine amidotransferases class-II LNN31_16140 PF04898 Glutamate synthase central domain LNN31_16140 PF01645 Conserved region in glutamate synthase LNN31_16140 PF01493 GXGXG motif LNN31_16145 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_16145 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNN31_16155 PF00561 alpha/beta hydrolase fold LNN31_16160 PF00072 Response regulator receiver domain LNN31_16160 PF01966 HD domain LNN31_16165 PF00793 DAHP synthetase I family LNN31_16170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_16170 PF17203 Single cache domain 3 LNN31_16170 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LNN31_16185 PF01208 Uroporphyrinogen decarboxylase (URO-D) LNN31_16190 PF02310 B12 binding domain LNN31_16190 PF02607 B12 binding domain LNN31_16205 PF03422 Carbohydrate binding module (family 6) LNN31_16205 PF00457 Glycosyl hydrolases family 11 LNN31_16205 PF01522 Polysaccharide deacetylase LNN31_16210 PF00990 Diguanylate cyclase, GGDEF domain LNN31_16210 PF08448 PAS fold LNN31_16215 PF00465 Iron-containing alcohol dehydrogenase LNN31_16235 PF00795 Carbon-nitrogen hydrolase LNN31_16240 PF13091 PLD-like domain LNN31_16250 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNN31_16250 PF07683 Cobalamin synthesis protein cobW C-terminal domain LNN31_16260 PF00245 Alkaline phosphatase LNN31_16265 PF00196 Bacterial regulatory proteins, luxR family LNN31_16265 PF00072 Response regulator receiver domain LNN31_16270 PF07730 Histidine kinase LNN31_16270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_16275 PF00005 ABC transporter LNN31_16300 PF03193 RsgA GTPase LNN31_16320 PF00004 ATPase family associated with various cellular activities (AAA) LNN31_16320 PF01434 Peptidase family M41 LNN31_16320 PF17862 AAA+ lid domain LNN31_16320 PF06480 FtsH Extracellular LNN31_16380 PF00291 Pyridoxal-phosphate dependent enzyme LNN31_16400 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_16400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_16420 PF00563 EAL domain LNN31_16420 PF01590 GAF domain LNN31_16420 PF00990 Diguanylate cyclase, GGDEF domain LNN31_16420 PF00360 Phytochrome region LNN31_16425 PF00282 Pyridoxal-dependent decarboxylase conserved domain LNN31_16470 PF01367 5'-3' exonuclease, C-terminal SAM fold LNN31_16470 PF00476 DNA polymerase family A LNN31_16470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNN31_16470 PF09281 Taq polymerase, exonuclease LNN31_16520 PF04002 RadC-like JAB domain LNN31_16520 PF12826 Helix-hairpin-helix motif LNN31_16555 PF01063 Amino-transferase class IV LNN31_16565 PF00633 Helix-hairpin-helix motif LNN31_16565 PF14815 NUDIX domain LNN31_16565 PF00730 HhH-GPD superfamily base excision DNA repair protein LNN31_16570 PF01871 AMMECR1 LNN31_16570 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LNN31_16575 PF03952 Enolase, N-terminal domain LNN31_16575 PF00113 Enolase, C-terminal TIM barrel domain LNN31_16585 PF00501 AMP-binding enzyme LNN31_16585 PF14535 AMP-binding enzyme C-terminal domain LNN31_16590 PF13361 UvrD-like helicase C-terminal domain LNN31_16590 PF00580 UvrD/REP helicase N-terminal domain LNN31_16615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_16615 PF03466 LysR substrate binding domain LNN31_16620 PF00465 Iron-containing alcohol dehydrogenase LNN31_16635 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LNN31_16635 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LNN31_16635 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LNN31_16640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNN31_16645 PF01880 Desulfoferrodoxin LNN31_16645 PF06397 Desulfoferrodoxin, N-terminal domain LNN31_16650 PF00465 Iron-containing alcohol dehydrogenase LNN31_16665 PF12838 4Fe-4S dicluster domain LNN31_16700 PF13276 HTH-like domain LNN31_16700 PF01527 Transposase LNN31_16700 PF13333 Integrase core domain LNN31_16700 PF00665 Integrase core domain LNN31_16715 PF02417 Chromate transporter LNN31_16720 PF01648 4'-phosphopantetheinyl transferase superfamily LNN31_16815 PF01026 TatD related DNase LNN31_16820 PF01743 Poly A polymerase head domain LNN31_16820 PF12627 Probable RNA and SrmB- binding site of polymerase A LNN31_16820 PF13735 tRNA nucleotidyltransferase domain 2 putative LNN31_16830 PF01063 Amino-transferase class IV LNN31_16835 PF04715 Anthranilate synthase component I, N terminal region LNN31_16835 PF00425 chorismate binding enzyme LNN31_16840 PF00117 Glutamine amidotransferase class-I LNN31_16855 PF06081 Aromatic acid exporter family member 1 LNN31_16865 PF00793 DAHP synthetase I family LNN31_16865 PF18152 DAHP synthase ferredoxin-like domain LNN31_16870 PF01053 Cys/Met metabolism PLP-dependent enzyme LNN31_16875 PF04204 Homoserine O-succinyltransferase LNN31_16885 PF01636 Phosphotransferase enzyme family LNN31_16890 PF03649 Uncharacterised protein family (UPF0014) LNN31_16895 PF00005 ABC transporter LNN31_16900 PF00881 Nitroreductase family LNN31_16900 PF01996 F420-0:Gamma-glutamyl ligase LNN31_16905 PF02673 Bacitracin resistance protein BacA LNN31_16915 PF00484 Carbonic anhydrase LNN31_16920 PF00990 Diguanylate cyclase, GGDEF domain LNN31_16920 PF00072 Response regulator receiver domain LNN31_16925 PF00512 His Kinase A (phospho-acceptor) domain LNN31_16925 PF01627 Hpt domain LNN31_16925 PF00072 Response regulator receiver domain LNN31_16925 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNN31_16925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_16925 PF00672 HAMP domain LNN31_16930 PF01339 CheB methylesterase LNN31_16930 PF01739 CheR methyltransferase, SAM binding domain LNN31_16930 PF08448 PAS fold LNN31_16930 PF03705 CheR methyltransferase, all-alpha domain LNN31_16935 PF01966 HD domain LNN31_16935 PF00072 Response regulator receiver domain LNN31_16940 PF08448 PAS fold LNN31_16940 PF00990 Diguanylate cyclase, GGDEF domain LNN31_16945 PF03851 UV-endonuclease UvdE LNN31_16950 PF01966 HD domain LNN31_16950 PF00072 Response regulator receiver domain LNN31_16970 PF12792 CSS motif domain associated with EAL LNN31_16970 PF00563 EAL domain LNN31_16975 PF00465 Iron-containing alcohol dehydrogenase LNN31_16980 PF01966 HD domain LNN31_16985 PF00072 Response regulator receiver domain LNN31_17010 PF01209 ubiE/COQ5 methyltransferase family LNN31_17015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LNN31_17020 PF03435 Saccharopine dehydrogenase NADP binding domain LNN31_17020 PF16653 Saccharopine dehydrogenase C-terminal domain LNN31_17025 PF00491 Arginase family LNN31_17030 PF17284 Spermidine synthase tetramerisation domain LNN31_17035 PF01276 Orn/Lys/Arg decarboxylase, major domain LNN31_17035 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LNN31_17040 PF02675 S-adenosylmethionine decarboxylase LNN31_17045 PF00672 HAMP domain LNN31_17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_17045 PF00512 His Kinase A (phospho-acceptor) domain LNN31_17045 PF01627 Hpt domain LNN31_17045 PF00072 Response regulator receiver domain LNN31_17045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNN31_17050 PF00072 Response regulator receiver domain LNN31_17055 PF02254 TrkA-N domain LNN31_17055 PF02080 TrkA-C domain LNN31_17060 PF02080 TrkA-C domain LNN31_17060 PF02254 TrkA-N domain LNN31_17065 PF00689 Cation transporting ATPase, C-terminus LNN31_17065 PF00690 Cation transporter/ATPase, N-terminus LNN31_17070 PF13538 UvrD-like helicase C-terminal domain LNN31_17080 PF02310 B12 binding domain LNN31_17080 PF02607 B12 binding domain LNN31_17105 PF00950 ABC 3 transport family LNN31_17110 PF00005 ABC transporter LNN31_17115 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment LNN31_17115 PF01297 Zinc-uptake complex component A periplasmic LNN31_17125 PF00072 Response regulator receiver domain LNN31_17125 PF01966 HD domain LNN31_17130 PF08543 Phosphomethylpyrimidine kinase LNN31_17130 PF02581 Thiamine monophosphate synthase LNN31_17135 PF13419 Haloacid dehalogenase-like hydrolase LNN31_17140 PF02581 Thiamine monophosphate synthase LNN31_17145 PF02110 Hydroxyethylthiazole kinase family LNN31_17150 PF13187 4Fe-4S dicluster domain LNN31_17150 PF04060 Putative Fe-S cluster LNN31_17155 PF02508 Rnf-Nqr subunit, membrane protein LNN31_17160 PF02508 Rnf-Nqr subunit, membrane protein LNN31_17165 PF04205 FMN-binding domain LNN31_17170 PF03116 NQR2, RnfD, RnfE family LNN31_17175 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNN31_17175 PF13375 RnfC Barrel sandwich hybrid domain LNN31_17175 PF10531 SLBB domain LNN31_17175 PF13237 4Fe-4S dicluster domain LNN31_17185 PF02683 Cytochrome C biogenesis protein transmembrane region LNN31_17190 PF00578 AhpC/TSA family LNN31_17210 PF13545 Crp-like helix-turn-helix domain LNN31_17210 PF00027 Cyclic nucleotide-binding domain LNN31_17215 PF00085 Thioredoxin LNN31_17220 PF11208 Protein of unknown function (DUF2992) LNN31_17230 PF00005 ABC transporter LNN31_17235 PF01032 FecCD transport family LNN31_17245 PF01613 Flavin reductase like domain LNN31_17265 PF12724 Flavodoxin domain LNN31_17270 PF00664 ABC transporter transmembrane region LNN31_17270 PF00005 ABC transporter LNN31_17275 PF00664 ABC transporter transmembrane region LNN31_17275 PF00005 ABC transporter LNN31_17280 PF00005 ABC transporter LNN31_17280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNN31_17285 PF00005 ABC transporter LNN31_17285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LNN31_17290 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_17295 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_17300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LNN31_17305 PF00664 ABC transporter transmembrane region LNN31_17305 PF00005 ABC transporter LNN31_17310 PF00005 ABC transporter LNN31_17310 PF00664 ABC transporter transmembrane region LNN31_17315 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LNN31_17315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LNN31_17320 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LNN31_17325 PF00209 Sodium:neurotransmitter symporter family LNN31_17330 PF04055 Radical SAM superfamily LNN31_17335 PF13597 Anaerobic ribonucleoside-triphosphate reductase LNN31_17335 PF03477 ATP cone domain LNN31_17355 PF07690 Major Facilitator Superfamily LNN31_17360 PF00072 Response regulator receiver domain LNN31_17360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNN31_17360 PF00512 His Kinase A (phospho-acceptor) domain LNN31_17360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_17360 PF00672 HAMP domain LNN31_17360 PF01627 Hpt domain LNN31_17365 PF00072 Response regulator receiver domain LNN31_17370 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_17385 PF10415 Fumarase C C-terminus LNN31_17385 PF00206 Lyase LNN31_17390 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LNN31_17390 PF01926 50S ribosome-binding GTPase LNN31_17395 PF03707 Bacterial signalling protein N terminal repeat LNN31_17395 PF00990 Diguanylate cyclase, GGDEF domain LNN31_17395 PF00563 EAL domain LNN31_17400 PF02562 PhoH-like protein LNN31_17400 PF13638 PIN domain LNN31_17405 PF00581 Rhodanese-like domain LNN31_17410 PF02557 D-alanyl-D-alanine carboxypeptidase LNN31_17415 PF00892 EamA-like transporter family LNN31_17420 PF02311 AraC-like ligand binding domain LNN31_17420 PF12833 Helix-turn-helix domain LNN31_17425 PF02634 FdhD/NarQ family LNN31_17430 PF13556 PucR C-terminal helix-turn-helix domain LNN31_17430 PF05651 Putative sugar diacid recognition LNN31_17430 PF17853 GGDEF-like domain LNN31_17435 PF00465 Iron-containing alcohol dehydrogenase LNN31_17440 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNN31_17440 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_17445 PF00990 Diguanylate cyclase, GGDEF domain LNN31_17445 PF08448 PAS fold LNN31_17455 PF00144 Beta-lactamase LNN31_17455 PF11954 Domain of unknown function (DUF3471) LNN31_17460 PF00144 Beta-lactamase LNN31_17460 PF07930 D-aminopeptidase, domain B LNN31_17465 PF07694 5TMR of 5TMR-LYT LNN31_17465 PF00990 Diguanylate cyclase, GGDEF domain LNN31_17470 PF01699 Sodium/calcium exchanger protein LNN31_17480 PF00106 short chain dehydrogenase LNN31_17490 PF05230 MASE2 domain LNN31_17490 PF00990 Diguanylate cyclase, GGDEF domain LNN31_17510 PF04226 Transglycosylase associated protein LNN31_17515 PF04607 Region found in RelA / SpoT proteins LNN31_17520 PF02915 Rubrerythrin LNN31_17535 PF06463 Molybdenum Cofactor Synthesis C LNN31_17535 PF04055 Radical SAM superfamily LNN31_17540 PF13478 XdhC Rossmann domain LNN31_17540 PF02625 XdhC and CoxI family LNN31_17565 PF09861 Lactate racemase N-terminal domain LNN31_17570 PF00390 Malic enzyme, N-terminal domain LNN31_17570 PF03949 Malic enzyme, NAD binding domain LNN31_17575 PF00162 Phosphoglycerate kinase LNN31_17585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_17585 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_17590 PF00364 Biotin-requiring enzyme LNN31_17590 PF02817 e3 binding domain LNN31_17590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNN31_17595 PF02780 Transketolase, C-terminal domain LNN31_17595 PF00364 Biotin-requiring enzyme LNN31_17595 PF02779 Transketolase, pyrimidine binding domain LNN31_17600 PF00676 Dehydrogenase E1 component LNN31_17605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNN31_17605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNN31_17610 PF00753 Metallo-beta-lactamase superfamily LNN31_17620 PF00111 2Fe-2S iron-sulfur cluster binding domain LNN31_17620 PF01799 [2Fe-2S] binding domain LNN31_17625 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LNN31_17625 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LNN31_17630 PF07729 FCD domain LNN31_17630 PF00392 Bacterial regulatory proteins, gntR family LNN31_17640 PF02203 Tar ligand binding domain homologue LNN31_17640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_17640 PF00672 HAMP domain LNN31_17645 PF00664 ABC transporter transmembrane region LNN31_17645 PF03412 Peptidase C39 family LNN31_17645 PF00005 ABC transporter LNN31_17650 PF00664 ABC transporter transmembrane region LNN31_17650 PF00005 ABC transporter LNN31_17650 PF03412 Peptidase C39 family LNN31_17700 PF13280 WYL domain LNN31_17700 PF08279 HTH domain LNN31_17705 PF03009 Glycerophosphoryl diester phosphodiesterase family LNN31_17710 PF03009 Glycerophosphoryl diester phosphodiesterase family LNN31_17720 PF03641 Possible lysine decarboxylase LNN31_17730 PF01638 HxlR-like helix-turn-helix LNN31_17735 PF00302 Chloramphenicol acetyltransferase LNN31_17745 PF01381 Helix-turn-helix LNN31_17750 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LNN31_17750 PF02896 PEP-utilising enzyme, TIM barrel domain LNN31_17750 PF00391 PEP-utilising enzyme, mobile domain LNN31_17760 PF00528 Binding-protein-dependent transport system inner membrane component LNN31_17780 PF00672 HAMP domain LNN31_17780 PF07228 Stage II sporulation protein E (SpoIIE) LNN31_17785 PF01554 MatE LNN31_17790 PF00072 Response regulator receiver domain LNN31_17790 PF00486 Transcriptional regulatory protein, C terminal LNN31_17795 PF00512 His Kinase A (phospho-acceptor) domain LNN31_17795 PF00989 PAS fold LNN31_17795 PF16736 Single Cache-like LNN31_17795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_17800 PF00005 ABC transporter LNN31_17815 PF12706 Beta-lactamase superfamily domain LNN31_17820 PF01554 MatE LNN31_17830 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LNN31_17840 PF02607 B12 binding domain LNN31_17840 PF02310 B12 binding domain LNN31_17845 PF03831 PhnA domain LNN31_17845 PF08274 PhnA Zinc-Ribbon LNN31_17850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_17850 PF06580 Histidine kinase LNN31_17855 PF03793 PASTA domain LNN31_17855 PF00069 Protein kinase domain LNN31_17860 PF00072 Response regulator receiver domain LNN31_17860 PF04397 LytTr DNA-binding domain LNN31_17865 PF00990 Diguanylate cyclase, GGDEF domain LNN31_17865 PF17158 Membrane-associated sensor, integral membrane domain LNN31_17870 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LNN31_17875 PF00005 ABC transporter LNN31_17875 PF00664 ABC transporter transmembrane region LNN31_17880 PF00005 ABC transporter LNN31_17880 PF00664 ABC transporter transmembrane region LNN31_17885 PF00664 ABC transporter transmembrane region LNN31_17885 PF00005 ABC transporter LNN31_17925 PF00248 Aldo/keto reductase family LNN31_17935 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_17945 PF01969 Protein of unknown function DUF111 LNN31_17950 PF00731 AIR carboxylase LNN31_17955 PF13411 MerR HTH family regulatory protein LNN31_17960 PF00248 Aldo/keto reductase family LNN31_17970 PF00990 Diguanylate cyclase, GGDEF domain LNN31_18000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_18000 PF00512 His Kinase A (phospho-acceptor) domain LNN31_18000 PF00672 HAMP domain LNN31_18010 PF00990 Diguanylate cyclase, GGDEF domain LNN31_18010 PF08448 PAS fold LNN31_18015 PF07556 Protein of unknown function (DUF1538) LNN31_18025 PF04055 Radical SAM superfamily LNN31_18025 PF06463 Molybdenum Cofactor Synthesis C LNN31_18045 PF01636 Phosphotransferase enzyme family LNN31_18055 PF07690 Major Facilitator Superfamily LNN31_18060 PF17922 Tetracyclin repressor-like, C-terminal domain LNN31_18060 PF00440 Bacterial regulatory proteins, tetR family LNN31_18070 PF07690 Major Facilitator Superfamily LNN31_18080 PF03707 Bacterial signalling protein N terminal repeat LNN31_18080 PF00990 Diguanylate cyclase, GGDEF domain LNN31_18080 PF00563 EAL domain LNN31_18105 PF13302 Acetyltransferase (GNAT) domain LNN31_18115 PF00274 Fructose-bisphosphate aldolase class-I LNN31_18125 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_18130 PF01381 Helix-turn-helix LNN31_18145 PF07859 alpha/beta hydrolase fold LNN31_18160 PF03466 LysR substrate binding domain LNN31_18160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_18165 PF00892 EamA-like transporter family LNN31_18170 PF00753 Metallo-beta-lactamase superfamily LNN31_18170 PF16123 Hydroxyacylglutathione hydrolase C-terminus LNN31_18175 PF00805 Pentapeptide repeats (8 copies) LNN31_18185 PF01810 LysE type translocator LNN31_18195 PF12697 Alpha/beta hydrolase family LNN31_18225 PF04542 Sigma-70 region 2 LNN31_18225 PF08281 Sigma-70, region 4 LNN31_18235 PF00672 HAMP domain LNN31_18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNN31_18235 PF00512 His Kinase A (phospho-acceptor) domain LNN31_18240 PF00486 Transcriptional regulatory protein, C terminal LNN31_18240 PF00072 Response regulator receiver domain LNN31_18255 PF04073 Aminoacyl-tRNA editing domain LNN31_18260 PF13396 Phospholipase_D-nuclease N-terminal LNN31_18260 PF13091 PLD-like domain LNN31_18270 PF00005 ABC transporter LNN31_18290 PF06100 MCRA family LNN31_18295 PF00440 Bacterial regulatory proteins, tetR family LNN31_18305 PF07690 Major Facilitator Superfamily LNN31_18320 PF03193 RsgA GTPase LNN31_18325 PF02687 FtsX-like permease family LNN31_18325 PF12704 MacB-like periplasmic core domain LNN31_18325 PF00005 ABC transporter LNN31_18340 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LNN31_18345 PF02203 Tar ligand binding domain homologue LNN31_18345 PF00672 HAMP domain LNN31_18345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNN31_18355 PF08331 Domain of unknown function (DUF1730) LNN31_18360 PF00892 EamA-like transporter family LNN31_18370 PF02558 Ketopantoate reductase PanE/ApbA LNN31_18370 PF08546 Ketopantoate reductase PanE/ApbA C terminal LNN31_18385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_18415 PF02311 AraC-like ligand binding domain LNN31_18415 PF12833 Helix-turn-helix domain LNN31_18430 PF13333 Integrase core domain LNN31_18430 PF00665 Integrase core domain LNN31_18430 PF13276 HTH-like domain LNN31_18470 PF00072 Response regulator receiver domain LNN31_18540 PF13333 Integrase core domain LNN31_18540 PF00665 Integrase core domain LNN31_18540 PF13276 HTH-like domain LNN31_18565 PF01252 Signal peptidase (SPase) II LNN31_18570 PF00403 Heavy-metal-associated domain LNN31_18575 PF01022 Bacterial regulatory protein, arsR family LNN31_18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNN31_18595 PF03466 LysR substrate binding domain LNN31_18605 PF01810 LysE type translocator LNN31_18620 PF01966 HD domain LNN31_18620 PF00672 HAMP domain LNN31_18645 PF00689 Cation transporting ATPase, C-terminus LNN31_18645 PF00690 Cation transporter/ATPase, N-terminus LNN31_18650 PF14693 Ribosomal protein TL5, C-terminal domain LNN31_18650 PF01386 Ribosomal L25p family LNN31_18700 PF13166 AAA domain LNN31_18710 PF06445 GyrI-like small molecule binding domain LNN31_18710 PF12833 Helix-turn-helix domain LNN31_18725 PF00132 Bacterial transferase hexapeptide (six repeats) LNN31_18735 PF00005 ABC transporter LNN31_18735 PF12848 ABC transporter LNN31_18740 PF07690 Major Facilitator Superfamily LNN31_18775 PF05105 Bacteriophage holin family LNN31_18860 PF00574 Clp protease LNN31_18885 PF00589 Phage integrase family LNN31_18885 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_19005 PF01381 Helix-turn-helix LNN31_19030 PF02899 Phage integrase, N-terminal SAM-like domain LNN31_19030 PF00589 Phage integrase family LNN31_19035 PF05958 tRNA (Uracil-5-)-methyltransferase LNN31_19045 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LNN31_19055 PF00085 Thioredoxin LNN31_19070 PF00301 Rubredoxin LNN31_19075 PF00037 4Fe-4S binding domain LNN31_19080 PF04468 PSP1 C-terminal conserved region LNN31_19095 PF02223 Thymidylate kinase LNN31_19105 PF00085 Thioredoxin LNN31_19110 PF01588 Putative tRNA binding domain LNN31_19110 PF09334 tRNA synthetases class I (M) LNN31_19110 PF08264 Anticodon-binding domain of tRNA LNN31_19115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNN31_19120 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNN31_19120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNN31_19125 PF00772 DnaB-like helicase N terminal domain LNN31_19125 PF03796 DnaB-like helicase C terminal domain LNN31_19130 PF03948 Ribosomal protein L9, C-terminal domain LNN31_19130 PF01281 Ribosomal protein L9, N-terminal domain LNN31_19135 PF01368 DHH family LNN31_19135 PF02272 DHHA1 domain LNN31_19140 PF09991 Predicted membrane protein (DUF2232) LNN31_19145 PF01084 Ribosomal protein S18 LNN31_19150 PF00436 Single-strand binding protein family LNN31_19155 PF01250 Ribosomal protein S6 LNN31_19165 PF06107 Bacterial protein of unknown function (DUF951) LNN31_19170 PF00924 Mechanosensitive ion channel LNN31_19185 PF17762 HTH domain found in ParB protein LNN31_19185 PF02195 ParB-like nuclease domain LNN31_19190 PF13614 AAA domain LNN31_19195 PF02527 rRNA small subunit methyltransferase G LNN31_19200 PF13932 GidA associated domain LNN31_19200 PF01134 Glucose inhibited division protein A LNN31_19205 PF01926 50S ribosome-binding GTPase LNN31_19205 PF12631 MnmE helical domain LNN31_19205 PF10396 GTP-binding protein TrmE N-terminus LNN31_19210 PF14804 Jag N-terminus LNN31_19210 PF01424 R3H domain LNN31_19215 PF02096 60Kd inner membrane protein LNN31_19220 PF01809 Putative membrane protein insertion efficiency factor LNN31_19225 PF00825 Ribonuclease P LNN31_19230 PF00468 Ribosomal protein L34