locus-tag	class	description
LNN31_00010	COG0592	DNA-directed DNA polymerase activity
LNN31_00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LNN31_00025	COG0187	DNA topoisomerase II activity
LNN31_00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LNN31_00040	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LNN31_00045	COG3414	Phosphotransferase system galactitol-specific IIB component
LNN31_00050	COG2226	methyltransferase
LNN31_00055	COG0747	negative chemotaxis
LNN31_00060	COG0601	transmembrane transport
LNN31_00065	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNN31_00070	COG0444	Belongs to the ABC transporter superfamily
LNN31_00075	COG4608	Belongs to the ABC transporter superfamily
LNN31_00080	COG1132	(ABC) transporter
LNN31_00085	COG0601	transmembrane transport
LNN31_00090	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNN31_00095	COG0747	negative chemotaxis
LNN31_00100	COG0444	Belongs to the ABC transporter superfamily
LNN31_00105	COG4608	Belongs to the ABC transporter superfamily
LNN31_00110	COG0534	Mate efflux family protein
LNN31_00115	COG2226	methyltransferase
LNN31_00120	COG1401	restriction endodeoxyribonuclease activity
LNN31_00130	COG0583	DNA-binding transcription factor activity
LNN31_00135	COG0601	transmembrane transport
LNN31_00140	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNN31_00150	COG0444	Belongs to the ABC transporter superfamily
LNN31_00155	COG4608	Belongs to the ABC transporter superfamily
LNN31_00165	COG0747	negative chemotaxis
LNN31_00170	COG0601	transmembrane transport
LNN31_00175	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNN31_00180	COG0444	Belongs to the ABC transporter superfamily
LNN31_00185	COG1124	(ABC) transporter
LNN31_00190	COG2119	membrane
LNN31_00210	COG2022	thiamine diphosphate biosynthetic process
LNN31_00215	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LNN31_00220	COG0352	thiamine-phosphate diphosphorylase activity
LNN31_00225	COG5001	Diguanylate cyclase
LNN31_00225	COG3300	MHYT domain
LNN31_00240	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LNN31_00240	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LNN31_00255	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LNN31_00270	COG2205	protein histidine kinase activity
LNN31_00275	COG0745	RESPONSE REGULATOR receiver
LNN31_00295	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNN31_00300	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LNN31_00305	COG0095	Lipoate-protein ligase
LNN31_00315	COG1393	Belongs to the ArsC family
LNN31_00345	COG1741	Belongs to the pirin family
LNN31_00380	COG1733	regulation of RNA biosynthetic process
LNN31_00385	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LNN31_00390	COG1803	Methylglyoxal synthase
LNN31_00400	COG4895	conserved protein (DUF2196)
LNN31_00425	COG1737	Transcriptional regulator
LNN31_00430	COG1063	alcohol dehydrogenase
LNN31_00435	COG1069	ribulokinase activity
LNN31_00455	COG1131	(ABC) transporter
LNN31_00460	COG0778	Nitroreductase
LNN31_00465	COG3706	GGDEF domain
LNN31_00470	COG5002	protein histidine kinase activity
LNN31_00475	COG0745	RESPONSE REGULATOR receiver
LNN31_00515	COG3620	sequence-specific DNA binding
LNN31_00590	COG1783	phage Terminase large subunit
LNN31_00600	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LNN31_00605	COG3620	sequence-specific DNA binding
LNN31_00655	COG0708	Exodeoxyribonuclease III
LNN31_00675	COG1132	(ABC) transporter
LNN31_00680	COG2207	Transcriptional regulator
LNN31_00680	COG3708	Transcriptional regulator
LNN31_00695	COG0484	heat shock protein binding
LNN31_00715	COG0446	pyridine nucleotide-disulphide oxidoreductase
LNN31_00755	COG3383	formate dehydrogenase (NAD+) activity
LNN31_00775	COG0745	RESPONSE REGULATOR receiver
LNN31_00780	COG2205	protein histidine kinase activity
LNN31_00785	COG1136	(ABC) transporter
LNN31_00795	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
LNN31_00810	COG1028	Short-chain dehydrogenase reductase Sdr
LNN31_00815	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNN31_00820	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNN31_00825	COG0022	dehydrogenase e1 component
LNN31_00830	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LNN31_00850	COG2199	diguanylate cyclase activity
LNN31_00860	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
LNN31_00865	COG2199	diguanylate cyclase activity
LNN31_00865	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LNN31_00870	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LNN31_00875	COG1233	COG1233 Phytoene dehydrogenase and related
LNN31_00880	COG1562	ergosterol biosynthetic process
LNN31_00885	COG0170	dolichyl monophosphate biosynthetic process
LNN31_00900	COG1063	alcohol dehydrogenase
LNN31_00920	COG4804	nuclease activity
LNN31_00945	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LNN31_00960	COG0004	ammonium transporteR
LNN31_00965	COG0347	Belongs to the P(II) protein family
LNN31_00990	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LNN31_01000	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LNN31_01005	COG2203	Gaf domain
LNN31_01005	COG3706	GGDEF domain
LNN31_01005	COG5001	Diguanylate cyclase
LNN31_01005	COG4251	negative regulation of phosphorylation
LNN31_01010	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LNN31_01050	COG1459	type II secretion system
LNN31_01080	COG2165	general secretion pathway protein
LNN31_01095	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LNN31_01100	COG0009	L-threonylcarbamoyladenylate synthase
LNN31_01105	COG0698	ribose 5-phosphate isomerase
LNN31_01145	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LNN31_01150	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LNN31_01155	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LNN31_01160	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LNN31_01165	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LNN31_01170	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LNN31_01175	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LNN31_01180	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LNN31_01210	COG1682	transport, permease protein
LNN31_01215	COG1134	teichoic acid transport
LNN31_01220	COG0438	transferase activity, transferring glycosyl groups
LNN31_01220	COG1216	Glycosyl transferase, family 2
LNN31_01225	COG0860	N-Acetylmuramoyl-L-alanine amidase
LNN31_01305	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNN31_01310	COG0765	amino acid transport
LNN31_01315	COG1126	abc transporter atp-binding protein
LNN31_01325	COG1215	transferase activity, transferring glycosyl groups
LNN31_01340	COG1136	(ABC) transporter
LNN31_01345	COG1136	(ABC) transporter
LNN31_01345	COG0577	efflux transmembrane transporter activity
LNN31_01355	COG5002	protein histidine kinase activity
LNN31_01355	COG3850	Histidine kinase
LNN31_01360	COG2770	Histidine kinase
LNN31_01360	COG3437	response regulator, receiver
LNN31_01380	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LNN31_01385	COG1687	branched-chain amino acid
LNN31_01395	COG1733	regulation of RNA biosynthetic process
LNN31_01405	COG1720	tRNA m6t6A37 methyltransferase activity
LNN31_01410	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LNN31_01415	COG0488	(ABC) transporter
LNN31_01430	COG3344	reverse transcriptase
LNN31_01450	COG0460	homoserine dehydrogenase
LNN31_01460	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LNN31_01465	COG0569	domain protein
LNN31_01470	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LNN31_01475	COG1459	type II secretion system
LNN31_01490	COG0482	sulfurtransferase activity
LNN31_01500	COG0745	RESPONSE REGULATOR receiver
LNN31_01505	COG3850	Histidine kinase
LNN31_01505	COG5002	protein histidine kinase activity
LNN31_01525	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LNN31_01535	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LNN31_01555	COG1131	(ABC) transporter
LNN31_01560	COG0842	Transport permease protein
LNN31_01590	COG2267	carboxylic ester hydrolase activity
LNN31_01595	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LNN31_01600	COG3304	Inner membrane component domain
LNN31_01605	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LNN31_01610	COG2011	ABC-type metal ion transport system permease component
LNN31_01615	COG1464	Belongs to the NlpA lipoprotein family
LNN31_01620	COG1115	amino acid carrier protein
LNN31_01630	COG0745	RESPONSE REGULATOR receiver
LNN31_01635	COG5002	protein histidine kinase activity
LNN31_01640	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LNN31_01650	COG1121	(ABC) transporter
LNN31_01655	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
LNN31_01680	COG1349	DNA-binding transcription factor activity
LNN31_01685	COG1105	Belongs to the carbohydrate kinase PfkB family
LNN31_01690	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LNN31_01690	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LNN31_01690	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNN31_01710	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
LNN31_01730	COG0058	SHG alpha-glucan phosphorylase activity
LNN31_01735	COG3103	Sh3 type 3 domain protein
LNN31_01735	COG0366	Alpha amylase catalytic
LNN31_01740	COG0297	glycogen (starch) synthase activity
LNN31_01745	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LNN31_01750	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LNN31_01755	COG0058	SHG alpha-glucan phosphorylase activity
LNN31_01760	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LNN31_01775	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LNN31_01785	COG1307	EDD domain protein, DegV family
LNN31_01790	COG2183	response to ionizing radiation
LNN31_01795	COG1329	Transcriptional regulator
LNN31_01800	COG4956	integral membrane protein (PIN domain superfamily)
LNN31_01805	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LNN31_01805	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
LNN31_01815	COG1683	Conserved Protein
LNN31_01820	COG1181	Belongs to the D-alanine--D-alanine ligase family
LNN31_01830	COG0018	arginyl-trna synthetase
LNN31_01835	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LNN31_01845	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LNN31_01850	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LNN31_01855	COG3959	Transketolase, thiamine diphosphate binding domain
LNN31_01860	COG3958	Transketolase
LNN31_01875	COG1122	ATPase activity
LNN31_01880	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LNN31_01890	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
LNN31_01980	COG2378	regulation of single-species biofilm formation
LNN31_01995	COG1131	(ABC) transporter
LNN31_02025	COG0509	glycine decarboxylation via glycine cleavage system
LNN31_02030	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LNN31_02035	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LNN31_02040	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LNN31_02045	COG1760	l-serine dehydratase
LNN31_02050	COG1760	l-serine dehydratase
LNN31_02060	COG1522	sequence-specific DNA binding
LNN31_02065	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LNN31_02075	COG1309	transcriptional regulator
LNN31_02080	COG0840	transmembrane signaling receptor activity
LNN31_02090	COG2814	Major facilitator Superfamily
LNN31_02095	COG3706	GGDEF domain
LNN31_02100	COG0683	leucine binding
LNN31_02105	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
LNN31_02125	COG1846	Transcriptional regulator
LNN31_02130	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LNN31_02135	COG0432	Pfam Uncharacterised protein family UPF0047
LNN31_02145	COG1335	isochorismatase
LNN31_02150	COG1733	regulation of RNA biosynthetic process
LNN31_02175	COG2378	regulation of single-species biofilm formation
LNN31_02230	COG0667	Aldo Keto reductase
LNN31_02255	COG4115	mRNA cleavage
LNN31_02285	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
LNN31_02290	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
LNN31_02310	COG0463	Glycosyl transferase, family 2
LNN31_02320	COG1082	Xylose isomerase domain protein TIM barrel
LNN31_02325	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
LNN31_02330	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
LNN31_02340	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LNN31_02345	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNN31_02350	COG1120	ATPase activity
LNN31_02355	COG2226	methyltransferase
LNN31_02365	COG3344	reverse transcriptase
LNN31_02370	COG1882	Formate acetyltransferase
LNN31_02375	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LNN31_02380	COG3275	phosphorelay sensor kinase activity
LNN31_02385	COG3279	Response regulator of the LytR AlgR family
LNN31_02390	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LNN31_02475	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LNN31_02480	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNN31_02485	COG1120	ATPase activity
LNN31_02490	COG1797	cobyrinic acid a,c-diamide synthase activity
LNN31_02510	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
LNN31_02520	COG2242	protein methyltransferase activity
LNN31_02545	COG0745	RESPONSE REGULATOR receiver
LNN31_02550	COG5002	protein histidine kinase activity
LNN31_02555	COG1136	(ABC) transporter
LNN31_02560	COG0577	efflux transmembrane transporter activity
LNN31_02565	COG3300	MHYT domain
LNN31_02565	COG5001	Diguanylate cyclase
LNN31_02570	COG0310	cobalt ion transport
LNN31_02585	COG1122	ATPase activity
LNN31_02590	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LNN31_02595	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LNN31_02595	COG1648	precorrin-2 dehydrogenase activity
LNN31_02605	COG0113	porphobilinogen synthase activity
LNN31_02610	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LNN31_02635	COG2099	Precorrin-6x reductase
LNN31_02640	COG1492	cobalamin metabolic process
LNN31_02645	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
LNN31_02650	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LNN31_02655	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
LNN31_02695	COG1136	(ABC) transporter
LNN31_02715	COG0653	protein targeting
LNN31_02740	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LNN31_02745	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LNN31_02765	COG0193	aminoacyl-tRNA hydrolase activity
LNN31_02770	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LNN31_02775	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LNN31_02780	COG2244	polysaccharide biosynthetic process
LNN31_02785	COG3956	TIGRFAM MazG family protein
LNN31_02790	COG0776	regulation of translation
LNN31_02795	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LNN31_02805	COG0248	Ppx GppA phosphatase
LNN31_02805	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LNN31_02835	COG0037	tRNA processing
LNN31_02840	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
LNN31_02860	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LNN31_02870	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LNN31_02885	COG0504	CTP synthase activity
LNN31_02890	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LNN31_02890	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNN31_02895	COG1396	sequence-specific DNA binding
LNN31_02900	COG0513	Belongs to the DEAD box helicase family
LNN31_02905	COG0534	Mate efflux family protein
LNN31_02910	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
LNN31_02915	COG0215	cysteine-tRNA ligase activity
LNN31_02920	COG4496	protein, YerC YecD
LNN31_02925	COG0436	Aminotransferase
LNN31_02935	COG0802	atpase or kinase
LNN31_02945	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LNN31_02950	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNN31_02950	COG0022	dehydrogenase e1 component
LNN31_02955	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNN31_02960	COG0517	IMP dehydrogenase activity
LNN31_02960	COG0516	GMP reductase activity
LNN31_02970	COG4974	Belongs to the 'phage' integrase family
LNN31_03060	COG1783	phage Terminase large subunit
LNN31_03075	COG2390	Transcriptional regulator
LNN31_03090	COG3732	PTS system glucitol sorbitol-specific
LNN31_03105	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LNN31_03110	COG0022	dehydrogenase e1 component
LNN31_03120	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNN31_03125	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNN31_03140	COG0281	malic enzyme
LNN31_03145	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LNN31_03150	COG0322	excinuclease ABC activity
LNN31_03170	COG1131	(ABC) transporter
LNN31_03210	COG0697	spore germination
LNN31_03275	COG3383	formate dehydrogenase (NAD+) activity
LNN31_03280	COG0746	molybdenum cofactor guanylyltransferase activity
LNN31_03315	COG0671	phosphoesterase, PA-phosphatase related
LNN31_03320	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LNN31_03330	COG1802	Transcriptional regulator
LNN31_03335	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LNN31_03340	COG0628	permease
LNN31_03345	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LNN31_03350	COG0124	histidyl-tRNA synthetase
LNN31_03355	COG0116	Belongs to the methyltransferase superfamily
LNN31_03360	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LNN31_03385	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LNN31_03405	COG0088	Forms part of the polypeptide exit tunnel
LNN31_03410	COG0089	rRNA binding
LNN31_03415	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LNN31_03420	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LNN31_03425	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LNN31_03430	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LNN31_03435	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LNN31_03440	COG0255	Belongs to the universal ribosomal protein uL29 family
LNN31_03445	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LNN31_03450	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LNN31_03460	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LNN31_03465	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LNN31_03470	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LNN31_03480	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LNN31_03485	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LNN31_03490	COG1841	ribosomal large subunit assembly
LNN31_03495	COG0200	Binds to the 23S rRNA
LNN31_03500	COG0201	protein transport
LNN31_03505	COG0563	adenylate kinase activity
LNN31_03520	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LNN31_03525	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LNN31_03535	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LNN31_03540	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LNN31_03545	COG0202	RNA polymerase activity
LNN31_03555	COG1122	ATPase activity
LNN31_03560	COG1122	ATPase activity
LNN31_03565	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LNN31_03570	COG0101	tRNA pseudouridine synthase activity
LNN31_03575	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LNN31_03580	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LNN31_03585	COG1217	gtp-binding protein TYPA
LNN31_03595	COG0628	permease
LNN31_03625	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
LNN31_03640	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LNN31_03655	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LNN31_03665	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LNN31_03670	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LNN31_03680	COG0653	protein targeting
LNN31_03705	COG0646	methionine synthase
LNN31_03705	COG1410	methionine synthase
LNN31_03715	COG1773	rubredoxin
LNN31_03715	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LNN31_03720	COG3344	reverse transcriptase
LNN31_03725	COG1309	transcriptional regulator
LNN31_03735	COG3829	transcription factor binding
LNN31_03740	COG5598	trimethylamine methyltransferase
LNN31_03745	COG5598	trimethylamine methyltransferase
LNN31_03755	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LNN31_03760	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LNN31_03765	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LNN31_03770	COG5012	cobalamin binding
LNN31_03785	COG5012	cobalamin binding
LNN31_03795	COG0523	cobalamin synthesis protein
LNN31_03805	COG0531	amino acid
LNN31_03810	COG5001	Diguanylate cyclase
LNN31_03815	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LNN31_03820	COG1910	domain protein
LNN31_03825	COG0725	ABC transporter, periplasmic molybdate-binding protein
LNN31_03830	COG4149	molybdate abc transporter
LNN31_03835	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LNN31_03845	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LNN31_03865	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LNN31_03885	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LNN31_03890	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LNN31_03895	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
LNN31_03910	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LNN31_03915	COG0022	dehydrogenase e1 component
LNN31_03920	COG3199	ATP-NAD kinase
LNN31_03925	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNN31_03930	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNN31_03940	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LNN31_03955	COG0598	Magnesium transport protein CorA
LNN31_03980	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LNN31_04000	COG1151	hydroxylamine reductase activity
LNN31_04015	COG4717	serine-type aminopeptidase activity
LNN31_04030	COG2878	Part of a membrane complex involved in electron transport
LNN31_04070	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LNN31_04075	COG1040	competence protein
LNN31_04080	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LNN31_04085	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LNN31_04090	COG1660	Displays ATPase and GTPase activities
LNN31_04095	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LNN31_04100	COG1481	regulation of sporulation
LNN31_04130	COG0840	transmembrane signaling receptor activity
LNN31_04135	COG1595	DNA-templated transcription, initiation
LNN31_04180	COG4974	Belongs to the 'phage' integrase family
LNN31_04185	COG2003	Belongs to the UPF0758 family
LNN31_04210	COG1484	DNA-dependent DNA replication
LNN31_04240	COG4679	PFAM Phage derived protein Gp49-like (DUF891)
LNN31_04245	COG2801	Transposase and inactivated derivatives
LNN31_04260	COG3620	sequence-specific DNA binding
LNN31_04360	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LNN31_04365	COG2365	Tyrosine phosphatase family
LNN31_04370	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LNN31_04375	COG1420	regulation of RNA biosynthetic process
LNN31_04380	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LNN31_04385	COG0443	Heat shock 70 kDa protein
LNN31_04390	COG0484	heat shock protein binding
LNN31_04395	COG1959	2 iron, 2 sulfur cluster binding
LNN31_04405	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
LNN31_04410	COG4917	ethanolamine utilization protein
LNN31_04420	COG2264	protein methyltransferase activity
LNN31_04425	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LNN31_04430	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LNN31_04435	COG0537	adenosine 5'-monophosphoramidase activity
LNN31_04440	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LNN31_04445	COG1610	YqeY-like protein
LNN31_04450	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LNN31_04495	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LNN31_04555	COG3845	ABC transporter
LNN31_04560	COG4603	Belongs to the binding-protein-dependent transport system permease family
LNN31_04565	COG1079	Belongs to the binding-protein-dependent transport system permease family
LNN31_04575	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LNN31_04580	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LNN31_04595	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
LNN31_04605	COG1366	Belongs to the anti-sigma-factor antagonist family
LNN31_04630	COG0189	ligase activity
LNN31_04635	COG0189	ligase activity
LNN31_04645	COG4251	negative regulation of phosphorylation
LNN31_04645	COG5001	Diguanylate cyclase
LNN31_04645	COG3706	GGDEF domain
LNN31_04645	COG2203	Gaf domain
LNN31_04670	COG2972	Histidine kinase
LNN31_04675	COG2201	protein-glutamate methylesterase activity
LNN31_04720	COG4869	propanediol catabolic process
LNN31_04735	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
LNN31_04775	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LNN31_04780	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
LNN31_04785	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LNN31_04790	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNN31_04795	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNN31_04815	COG2172	sigma factor antagonist activity
LNN31_04820	COG1191	sigma factor activity
LNN31_04825	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LNN31_04835	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LNN31_04845	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
LNN31_04850	COG1074	ATP-dependent DNA helicase activity
LNN31_04880	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LNN31_04900	COG4589	Belongs to the CDS family
LNN31_04905	COG0750	zinc metalloprotease
LNN31_04910	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
LNN31_04930	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
LNN31_04935	COG1454	alcohol dehydrogenase
LNN31_04940	COG0739	heme binding
LNN31_04940	COG0741	lytic transglycosylase activity
LNN31_04940	COG1196	nuclear chromosome segregation
LNN31_04945	COG2884	Cell division ATP-binding protein ftsE
LNN31_04950	COG2177	Part of the ABC transporter FtsEX involved in
LNN31_04955	COG1196	nuclear chromosome segregation
LNN31_04955	COG0739	heme binding
LNN31_04955	COG0741	lytic transglycosylase activity
LNN31_04960	COG0793	Belongs to the peptidase S41A family
LNN31_04960	COG3409	Peptidoglycan-binding domain 1 protein
LNN31_04965	COG0556	nucleotide-excision repair
LNN31_04990	COG1278	Cold shock
LNN31_05000	COG0322	excinuclease ABC activity
LNN31_05005	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
LNN31_05020	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LNN31_05030	COG0423	glycine-tRNA ligase activity
LNN31_05035	COG1283	sodium-dependent phosphate transmembrane transporter activity
LNN31_05045	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
LNN31_05075	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LNN31_05080	COG1776	CheC inhibitor of MCP methylation
LNN31_05080	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LNN31_05085	COG2201	protein-glutamate methylesterase activity
LNN31_05090	COG3190	flagellar
LNN31_05090	COG1338	Plays a role in the flagellum-specific transport system
LNN31_05095	COG1338	Plays a role in the flagellum-specific transport system
LNN31_05105	COG1684	flagellar biosynthetic protein fliR
LNN31_05110	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LNN31_05115	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LNN31_05120	COG1191	sigma factor activity
LNN31_05125	COG4786	Flagellar basal body rod
LNN31_05130	COG4786	Flagellar basal body rod
LNN31_05140	COG1776	CheC inhibitor of MCP methylation
LNN31_05145	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
LNN31_05150	COG0835	chemotaxis
LNN31_05155	COG2201	protein-glutamate methylesterase activity
LNN31_05170	COG4786	Flagellar basal body rod
LNN31_05170	COG1256	bacterial-type flagellum assembly
LNN31_05175	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LNN31_05225	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LNN31_05245	COG0443	Heat shock 70 kDa protein
LNN31_05255	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LNN31_05265	COG2198	Histidine kinase
LNN31_05265	COG0643	Histidine kinase
LNN31_05275	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LNN31_05290	COG1815	bacterial-type flagellum-dependent cell motility
LNN31_05295	COG1558	bacterial-type flagellum-dependent cell motility
LNN31_05300	COG1677	Flagellar hook-basal body complex protein FliE
LNN31_05310	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LNN31_05320	COG1157	protein secretion by the type III secretion system
LNN31_05335	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LNN31_05350	COG0126	phosphoglycerate kinase activity
LNN31_05360	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LNN31_05365	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LNN31_05380	COG0542	response to heat
LNN31_05395	COG0166	Belongs to the GPI family
LNN31_05400	COG3300	MHYT domain
LNN31_05400	COG5001	Diguanylate cyclase
LNN31_05415	COG0473	3-isopropylmalate dehydrogenase activity
LNN31_05425	COG1522	sequence-specific DNA binding
LNN31_05430	COG0686	Belongs to the AlaDH PNT family
LNN31_05435	COG1115	amino acid carrier protein
LNN31_05450	COG0358	DNA primase activity
LNN31_05455	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LNN31_05460	COG2384	SAM-dependent methyltransferase
LNN31_05465	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LNN31_05475	COG2204	response regulator
LNN31_05485	COG5564	TIM-barrel signal transduction protein
LNN31_05490	COG1070	Carbohydrate kinase
LNN31_05500	COG0745	RESPONSE REGULATOR receiver
LNN31_05520	COG1477	protein flavinylation
LNN31_05530	COG2226	methyltransferase
LNN31_05615	COG1937	Protein conserved in bacteria
LNN31_05620	COG2217	Heavy metal translocating P-type atpase
LNN31_05665	COG1394	ATPase activity, coupled to movement of substances
LNN31_05720	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LNN31_05760	COG5012	cobalamin binding
LNN31_05770	COG0583	DNA-binding transcription factor activity
LNN31_05775	COG0583	DNA-binding transcription factor activity
LNN31_05795	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LNN31_05825	COG1028	Short-chain dehydrogenase reductase Sdr
LNN31_05830	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNN31_05835	COG2414	aldehyde ferredoxin oxidoreductase
LNN31_05840	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LNN31_05870	COG2508	Transcriptional regulator
LNN31_05885	COG0693	protein deglycase activity
LNN31_05890	COG2508	Transcriptional regulator
LNN31_05900	COG0318	PFAM AMP-dependent synthetase and ligase
LNN31_05920	COG1924	4 iron, 4 sulfur cluster binding
LNN31_05930	COG2894	cell division
LNN31_05965	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
LNN31_05970	COG2226	methyltransferase
LNN31_05990	COG0375	protein maturation
LNN31_06000	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LNN31_06025	COG2197	response regulator
LNN31_06075	COG1309	transcriptional regulator
LNN31_06115	COG2801	Transposase and inactivated derivatives
LNN31_06135	COG5012	cobalamin binding
LNN31_06145	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LNN31_06165	COG2003	Belongs to the UPF0758 family
LNN31_06210	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LNN31_06215	COG0573	inorganic phosphate transmembrane transporter activity
LNN31_06225	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LNN31_06230	COG0704	Plays a role in the regulation of phosphate uptake
LNN31_06235	COG3706	GGDEF domain
LNN31_06305	COG2212	antiporter activity
LNN31_06330	COG1842	Phage shock protein A
LNN31_06340	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LNN31_06350	COG5001	Diguanylate cyclase
LNN31_06350	COG3300	MHYT domain
LNN31_06360	COG2217	Heavy metal translocating P-type atpase
LNN31_06365	COG0789	Transcriptional regulator
LNN31_06375	COG1131	(ABC) transporter
LNN31_06380	COG3237	CsbD-like
LNN31_06385	COG3942	CHAP domain
LNN31_06385	COG1388	LysM domain
LNN31_06390	COG0306	phosphate transporter
LNN31_06405	COG3706	GGDEF domain
LNN31_06410	COG3437	response regulator, receiver
LNN31_06410	COG0784	Response regulator, receiver
LNN31_06425	COG1408	metallophosphoesterase
LNN31_06435	COG0003	Pfam Anion-transporting ATPase
LNN31_06445	COG0003	Pfam Anion-transporting ATPase
LNN31_06450	COG3426	butyrate kinase activity
LNN31_06455	COG2309	aminopeptidase activity
LNN31_06460	COG0840	transmembrane signaling receptor activity
LNN31_06500	COG1595	DNA-templated transcription, initiation
LNN31_06515	COG0840	transmembrane signaling receptor activity
LNN31_06520	COG0840	transmembrane signaling receptor activity
LNN31_06530	COG1716	ATPase activity
LNN31_06530	COG5001	Diguanylate cyclase
LNN31_06535	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LNN31_06540	COG3344	reverse transcriptase
LNN31_06560	COG1125	glycine betaine transport
LNN31_06560	COG0517	IMP dehydrogenase activity
LNN31_06580	COG0765	amino acid transport
LNN31_06585	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNN31_06605	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LNN31_06610	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LNN31_06615	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LNN31_06625	COG2918	glutathione biosynthetic process
LNN31_06625	COG0189	ligase activity
LNN31_06630	COG2221	Nitrite and sulphite reductase 4Fe-4S
LNN31_06635	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
LNN31_06645	COG1215	transferase activity, transferring glycosyl groups
LNN31_06655	COG3706	GGDEF domain
LNN31_06675	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LNN31_06680	COG3706	GGDEF domain
LNN31_06690	COG0071	Belongs to the small heat shock protein (HSP20) family
LNN31_06695	COG0348	domain, Protein
LNN31_06710	COG1002	Type II restriction enzyme, methylase subunits
LNN31_06745	COG4824	toxin secretion phage lysis holin
LNN31_06750	COG3409	Peptidoglycan-binding domain 1 protein
LNN31_06750	COG0860	N-Acetylmuramoyl-L-alanine amidase
LNN31_06785	COG0789	Transcriptional regulator
LNN31_06825	COG5012	cobalamin binding
LNN31_06845	COG0471	metal ion transport
LNN31_06850	COG0840	transmembrane signaling receptor activity
LNN31_06855	COG3829	transcription factor binding
LNN31_06855	COG3290	protein histidine kinase activity
LNN31_06875	COG0523	cobalamin synthesis protein
LNN31_06885	COG5012	cobalamin binding
LNN31_06905	COG2188	Transcriptional regulator
LNN31_06940	COG3706	GGDEF domain
LNN31_06970	COG0789	Transcriptional regulator
LNN31_06975	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LNN31_06980	COG0066	3-isopropylmalate dehydratase activity
LNN31_06995	COG0596	Alpha beta hydrolase
LNN31_07035	COG4978	Transcriptional regulator
LNN31_07035	COG0789	Transcriptional regulator
LNN31_07050	COG0789	Transcriptional regulator
LNN31_07060	COG2226	methyltransferase
LNN31_07075	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNN31_07090	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LNN31_07115	COG0840	transmembrane signaling receptor activity
LNN31_07145	COG2814	Major facilitator Superfamily
LNN31_07150	COG0488	(ABC) transporter
LNN31_07160	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LNN31_07165	COG0275	rRNA processing
LNN31_07230	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LNN31_07235	COG1131	(ABC) transporter
LNN31_07245	COG0179	Fumarylacetoacetate (FAA) hydrolase
LNN31_07255	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LNN31_07265	COG0284	orotidine-5'-phosphate decarboxylase activity
LNN31_07270	COG0543	2 iron, 2 sulfur cluster binding
LNN31_07275	COG0167	dihydroorotate dehydrogenase activity
LNN31_07280	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LNN31_07285	COG0693	protein deglycase activity
LNN31_07290	COG2203	Gaf domain
LNN31_07290	COG3706	GGDEF domain
LNN31_07290	COG4251	negative regulation of phosphorylation
LNN31_07290	COG5001	Diguanylate cyclase
LNN31_07295	COG0840	transmembrane signaling receptor activity
LNN31_07310	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LNN31_07315	COG0840	transmembrane signaling receptor activity
LNN31_07335	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LNN31_07350	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LNN31_07355	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LNN31_07360	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LNN31_07365	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LNN31_07370	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LNN31_07375	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LNN31_07380	COG0138	bifunctional purine biosynthesis protein purh
LNN31_07385	COG0151	Belongs to the GarS family
LNN31_07390	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LNN31_07395	COG1472	Belongs to the glycosyl hydrolase 3 family
LNN31_07400	COG1214	PFAM Peptidase M22, glycoprotease
LNN31_07415	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LNN31_07425	COG0459	protein refolding
LNN31_07435	COG0488	(ABC) transporter
LNN31_07440	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
LNN31_07445	COG1396	sequence-specific DNA binding
LNN31_07465	COG2333	competence protein COMEC
LNN31_07465	COG0658	competence protein
LNN31_07470	COG1466	dna polymerase III delta subunit
LNN31_07475	COG0268	Binds directly to 16S ribosomal RNA
LNN31_07480	COG0481	GTPase activity
LNN31_07490	COG2376	Dihydroxyacetone kinase
LNN31_07500	COG1461	Dihydroxyacetone kinase
LNN31_07510	COG1349	DNA-binding transcription factor activity
LNN31_07520	COG5012	cobalamin binding
LNN31_07535	COG2376	Dihydroxyacetone kinase
LNN31_07560	COG1704	LemA family
LNN31_07585	COG3457	Alanine racemase
LNN31_07590	COG0495	leucyl-tRNA aminoacylation
LNN31_07620	COG1242	4 iron, 4 sulfur cluster binding
LNN31_07625	COG2357	RelA SpoT domain protein
LNN31_07630	COG0217	transcriptional regulatory protein
LNN31_07640	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LNN31_07640	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LNN31_07645	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LNN31_07650	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LNN31_07655	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LNN31_07660	COG0557	exoribonuclease II activity
LNN31_07665	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LNN31_07715	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNN31_07715	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNN31_07820	COG0860	N-Acetylmuramoyl-L-alanine amidase
LNN31_07825	COG1802	Transcriptional regulator
LNN31_07825	COG4626	Terminase
LNN31_07830	COG4695	Portal protein
LNN31_07940	COG1691	(AIR) carboxylase
LNN31_07945	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
LNN31_07985	COG0583	DNA-binding transcription factor activity
LNN31_07995	COG0583	DNA-binding transcription factor activity
LNN31_08045	COG0375	protein maturation
LNN31_08050	COG2508	Transcriptional regulator
LNN31_08055	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LNN31_08085	COG2508	Transcriptional regulator
LNN31_08085	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
LNN31_08090	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LNN31_08115	COG4584	PFAM Integrase catalytic
LNN31_08120	COG1484	DNA-dependent DNA replication
LNN31_08135	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LNN31_08135	COG0551	DNA topoisomerase type I activity
LNN31_08140	COG1396	sequence-specific DNA binding
LNN31_08210	COG1192	Involved in chromosome partitioning
LNN31_08360	COG2801	Transposase and inactivated derivatives
LNN31_08445	COG3436	PFAM IS66 Orf2 family protein
LNN31_08495	COG4584	PFAM Integrase catalytic
LNN31_08500	COG1484	DNA-dependent DNA replication
LNN31_08505	COG4584	PFAM Integrase catalytic
LNN31_08510	COG1484	DNA-dependent DNA replication
LNN31_08525	COG1396	sequence-specific DNA binding
LNN31_08530	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LNN31_08535	COG0531	amino acid
LNN31_08540	COG1454	alcohol dehydrogenase
LNN31_08570	COG2200	EAL domain
LNN31_08610	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LNN31_08615	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LNN31_08630	COG2764	glyoxalase bleomycin resistance protein dioxygenase
LNN31_08635	COG1301	dicarboxylic acid transport
LNN31_08655	COG5002	protein histidine kinase activity
LNN31_08655	COG5001	Diguanylate cyclase
LNN31_08655	COG3447	MASE1 domain protein
LNN31_08660	COG5001	Diguanylate cyclase
LNN31_08660	COG3300	MHYT domain
LNN31_08665	COG1966	Carbon starvation protein
LNN31_08675	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LNN31_08685	COG0697	spore germination
LNN31_08700	COG0425	Belongs to the sulfur carrier protein TusA family
LNN31_08705	COG2210	Belongs to the sulfur carrier protein TusA family
LNN31_08710	COG1104	cysteine desulfurase activity
LNN31_08730	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LNN31_08735	COG4399	Belongs to the UPF0754 family
LNN31_08755	COG1136	(ABC) transporter
LNN31_08770	COG0500	methyltransferase
LNN31_08775	COG1757	Na H antiporter
LNN31_08795	COG1115	amino acid carrier protein
LNN31_08805	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LNN31_08810	COG2868	ribosomal protein
LNN31_08815	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LNN31_08820	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LNN31_08830	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LNN31_08835	COG1713	HD superfamily hydrolase involved in NAD metabolism
LNN31_08840	COG0799	negative regulation of ribosome biogenesis
LNN31_08845	COG0012	GTP binding
LNN31_08855	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LNN31_08865	COG4120	Belongs to the binding-protein-dependent transport system permease family
LNN31_08870	COG3842	ATPase activity
LNN31_08875	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LNN31_08890	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LNN31_08895	COG0569	domain protein
LNN31_08900	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LNN31_08905	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LNN31_08910	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LNN31_08910	COG0072	phenylalanine-tRNA ligase activity
LNN31_08925	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LNN31_08930	COG4974	Belongs to the 'phage' integrase family
LNN31_08960	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNN31_08965	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LNN31_08985	COG0509	glycine decarboxylation via glycine cleavage system
LNN31_09000	COG0640	Transcriptional regulator
LNN31_09005	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LNN31_09010	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LNN31_09045	COG1126	abc transporter atp-binding protein
LNN31_09050	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNN31_09055	COG0765	amino acid transport
LNN31_09060	COG0765	amino acid transport
LNN31_09075	COG3706	GGDEF domain
LNN31_09090	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LNN31_09130	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
LNN31_09160	COG0525	valine-tRNA ligase activity
LNN31_09165	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LNN31_09180	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LNN31_09185	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LNN31_09210	COG0372	Belongs to the citrate synthase family
LNN31_09225	COG1692	metallophosphoesterase
LNN31_09230	COG1418	mRNA catabolic process
LNN31_09235	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LNN31_09240	COG1058	Belongs to the CinA family
LNN31_09240	COG1546	Belongs to the CinA family
LNN31_09245	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LNN31_09250	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LNN31_09255	COG1674	ftsk spoiiie
LNN31_09260	COG0756	dUTP diphosphatase activity
LNN31_09265	COG1185	polyribonucleotide nucleotidyltransferase activity
LNN31_09270	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LNN31_09275	COG0196	riboflavin kinase activity
LNN31_09280	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LNN31_09285	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LNN31_09290	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LNN31_09295	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LNN31_09300	COG2740	Nucleic-acid-binding protein implicated in transcription termination
LNN31_09305	COG0195	Participates in both transcription termination and antitermination
LNN31_09310	COG0779	Required for maturation of 30S ribosomal subunits
LNN31_09315	COG0233	cytoplasmic translational termination
LNN31_09320	COG0528	UMP kinase activity
LNN31_09325	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LNN31_09330	COG0052	Belongs to the universal ribosomal protein uS2 family
LNN31_09335	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LNN31_09340	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LNN31_09345	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LNN31_09350	COG0758	DNA mediated transformation
LNN31_09355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNN31_09390	COG2894	cell division
LNN31_09445	COG5001	Diguanylate cyclase
LNN31_09445	COG3300	MHYT domain
LNN31_09460	COG1381	Involved in DNA repair and RecF pathway recombination
LNN31_09465	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LNN31_09470	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LNN31_09475	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LNN31_09490	COG2070	2-Nitropropane dioxygenase
LNN31_09500	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LNN31_09505	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LNN31_09515	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LNN31_09525	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LNN31_09530	COG0511	ligase activity, forming carbon-carbon bonds
LNN31_09540	COG0439	Biotin carboxylase
LNN31_09545	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LNN31_09550	COG0825	malonyl-CoA metabolic process
LNN31_09565	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LNN31_09570	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LNN31_09595	COG0446	pyridine nucleotide-disulphide oxidoreductase
LNN31_09605	COG1846	Transcriptional regulator
LNN31_09610	COG0386	Belongs to the glutathione peroxidase family
LNN31_09620	COG3706	GGDEF domain
LNN31_09640	COG0745	RESPONSE REGULATOR receiver
LNN31_09645	COG2205	protein histidine kinase activity
LNN31_09645	COG3437	response regulator, receiver
LNN31_09645	COG3850	Histidine kinase
LNN31_09645	COG4999	Histidine kinase
LNN31_09650	COG0840	transmembrane signaling receptor activity
LNN31_09655	COG0835	chemotaxis
LNN31_09660	COG0643	Histidine kinase
LNN31_09660	COG2198	Histidine kinase
LNN31_09675	COG2207	Transcriptional regulator
LNN31_09675	COG3708	Transcriptional regulator
LNN31_09690	COG3041	Addiction module toxin RelE StbE family
LNN31_09715	COG4584	PFAM Integrase catalytic
LNN31_09755	COG2337	Toxic component of a toxin-antitoxin (TA) module
LNN31_09770	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LNN31_09785	COG3843	relaxase mobilization nuclease domain protein
LNN31_09800	COG4584	PFAM Integrase catalytic
LNN31_09810	COG2801	Transposase and inactivated derivatives
LNN31_09850	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
LNN31_09910	COG2801	Transposase and inactivated derivatives
LNN31_09935	COG0741	lytic transglycosylase activity
LNN31_09935	COG0791	NLP P60 protein
LNN31_09940	COG2801	Transposase and inactivated derivatives
LNN31_09985	COG1484	DNA-dependent DNA replication
LNN31_10015	COG1191	sigma factor activity
LNN31_10020	COG2226	methyltransferase
LNN31_10060	COG1475	DNA binding
LNN31_10065	COG1192	Involved in chromosome partitioning
LNN31_10075	COG1002	Type II restriction enzyme, methylase subunits
LNN31_10100	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
LNN31_10105	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNN31_10115	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LNN31_10120	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LNN31_10125	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
LNN31_10160	COG3706	GGDEF domain
LNN31_10170	COG1744	ABC transporter substrate-binding protein PnrA-like
LNN31_10270	COG1104	cysteine desulfurase activity
LNN31_10295	COG0175	sulfate reduction
LNN31_10340	COG2198	Histidine kinase
LNN31_10340	COG5002	protein histidine kinase activity
LNN31_10340	COG0784	Response regulator, receiver
LNN31_10345	COG2003	Belongs to the UPF0758 family
LNN31_10375	COG0428	transporter
LNN31_10385	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNN31_10385	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNN31_10385	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
LNN31_10395	COG2376	Dihydroxyacetone kinase
LNN31_10400	COG0159	tryptophan synthase activity
LNN31_10405	COG0133	tryptophan synthase activity
LNN31_10415	COG0134	indole-3-glycerol-phosphate synthase activity
LNN31_10420	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LNN31_10425	COG0512	Glutamine amidotransferase of anthranilate synthase
LNN31_10425	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LNN31_10445	COG1162	GTPase activity
LNN31_10450	COG1695	Transcriptional regulator
LNN31_10460	COG0840	transmembrane signaling receptor activity
LNN31_10470	COG2201	protein-glutamate methylesterase activity
LNN31_10475	COG0513	Belongs to the DEAD box helicase family
LNN31_10485	COG1278	Cold shock
LNN31_10500	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LNN31_10515	COG0514	ATP-dependent DNA helicase (RecQ)
LNN31_10540	COG0424	maF-like protein
LNN31_10545	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LNN31_10555	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LNN31_10560	COG0025	NhaP-type Na H and K H
LNN31_10565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LNN31_10625	COG3706	GGDEF domain
LNN31_10635	COG2414	aldehyde ferredoxin oxidoreductase
LNN31_10640	COG3706	GGDEF domain
LNN31_10650	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LNN31_10665	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LNN31_10680	COG2188	Transcriptional regulator
LNN31_10695	COG2972	Histidine kinase
LNN31_10695	COG0745	RESPONSE REGULATOR receiver
LNN31_10700	COG3279	Response regulator of the LytR AlgR family
LNN31_10725	COG4824	toxin secretion phage lysis holin
LNN31_10750	COG1136	(ABC) transporter
LNN31_10755	COG1002	Type II restriction enzyme, methylase subunits
LNN31_10770	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNN31_10770	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNN31_10780	COG2176	DNA-directed DNA polymerase activity
LNN31_10785	COG3706	GGDEF domain
LNN31_10805	COG0446	pyridine nucleotide-disulphide oxidoreductase
LNN31_10810	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LNN31_10815	COG1028	Short-chain dehydrogenase reductase Sdr
LNN31_10820	COG1070	Carbohydrate kinase
LNN31_10830	COG0596	Alpha beta hydrolase
LNN31_10850	COG1151	hydroxylamine reductase activity
LNN31_10875	COG2909	trisaccharide binding
LNN31_10880	COG0488	(ABC) transporter
LNN31_10885	COG0326	Molecular chaperone. Has ATPase activity
LNN31_10890	COG0436	Aminotransferase
LNN31_10915	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LNN31_10920	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LNN31_10925	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
LNN31_10930	COG1067	ATP-dependent peptidase activity
LNN31_10935	COG0840	transmembrane signaling receptor activity
LNN31_10940	COG0840	transmembrane signaling receptor activity
LNN31_10965	COG2364	Membrane
LNN31_10970	COG5002	protein histidine kinase activity
LNN31_10970	COG5001	Diguanylate cyclase
LNN31_10970	COG3447	MASE1 domain protein
LNN31_10985	COG0488	(ABC) transporter
LNN31_10990	COG3119	arylsulfatase activity
LNN31_10995	COG0641	radical SAM
LNN31_11005	COG3944	biosynthesis protein
LNN31_11010	COG1316	TRANSCRIPTIONal
LNN31_11015	COG1086	Polysaccharide biosynthesis protein
LNN31_11045	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LNN31_11065	COG2244	polysaccharide biosynthetic process
LNN31_11070	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LNN31_11080	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LNN31_11105	COG0438	transferase activity, transferring glycosyl groups
LNN31_11110	COG0438	transferase activity, transferring glycosyl groups
LNN31_11145	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LNN31_11150	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LNN31_11165	COG0792	nuclease activity
LNN31_11180	COG0681	Belongs to the peptidase S26 family
LNN31_11185	COG0335	large ribosomal subunit rRNA binding
LNN31_11190	COG0336	Belongs to the RNA methyltransferase TrmD family
LNN31_11195	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LNN31_11200	COG1837	Belongs to the UPF0109 family
LNN31_11205	COG0228	four-way junction DNA binding
LNN31_11210	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LNN31_11215	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
LNN31_11220	COG0552	protein localization to endoplasmic reticulum
LNN31_11225	COG1196	nuclear chromosome segregation
LNN31_11235	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LNN31_11240	COG0416	fatty acid biosynthetic process
LNN31_11245	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LNN31_11255	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LNN31_11265	COG2272	Belongs to the type-B carboxylesterase lipase family
LNN31_11285	COG0563	adenylate kinase activity
LNN31_11295	COG4086	secreted protein
LNN31_11310	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNN31_11310	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LNN31_11315	COG1476	TRANSCRIPTIONal
LNN31_11340	COG0440	acetolactate synthase activity
LNN31_11345	COG0028	Belongs to the TPP enzyme family
LNN31_11365	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LNN31_11370	COG0742	ribosomal rna small subunit methyltransferase
LNN31_11375	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LNN31_11380	COG1461	Dihydroxyacetone kinase
LNN31_11385	COG1302	Protein conserved in bacteria
LNN31_11390	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LNN31_11400	COG1162	GTPase activity
LNN31_11405	COG0515	serine threonine protein kinase
LNN31_11405	COG2815	serine threonine protein kinase
LNN31_11410	COG0631	protein serine/threonine phosphatase activity
LNN31_11415	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LNN31_11420	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LNN31_11420	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LNN31_11425	COG2738	Putative neutral zinc metallopeptidase
LNN31_11430	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LNN31_11435	COG0242	peptide deformylase activity
LNN31_11440	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LNN31_11455	COG1561	YicC-like family, N-terminal region
LNN31_11465	COG0564	pseudouridine synthase activity
LNN31_11475	COG1799	cell septum assembly
LNN31_11480	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LNN31_11500	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LNN31_11505	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LNN31_11510	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LNN31_11515	COG1490	D-aminoacyl-tRNA deacylase activity
LNN31_11520	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LNN31_11530	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
LNN31_11530	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LNN31_11535	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LNN31_11540	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LNN31_11545	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LNN31_11550	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LNN31_11555	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LNN31_11560	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LNN31_11570	COG0740	serine-type endopeptidase activity
LNN31_11575	COG0544	peptidyl-prolyl cis-trans isomerase activity
LNN31_11585	COG0411	ABC transporter
LNN31_11595	COG0559	Belongs to the binding-protein-dependent transport system permease family
LNN31_11600	COG0683	leucine binding
LNN31_11605	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LNN31_11610	COG0662	Cupin 2, conserved barrel domain protein
LNN31_11615	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LNN31_11620	COG0564	pseudouridine synthase activity
LNN31_11625	COG1245	4Fe-4S binding domain
LNN31_11625	COG2878	Part of a membrane complex involved in electron transport
LNN31_11630	COG4657	Part of a membrane complex involved in electron transport
LNN31_11635	COG4660	Part of a membrane complex involved in electron transport
LNN31_11640	COG4659	FMN binding
LNN31_11645	COG4658	electron transport chain
LNN31_11650	COG4656	Part of a membrane complex involved in electron transport
LNN31_11655	COG1362	aminopeptidase activity
LNN31_11660	COG4224	UPF0291 protein
LNN31_11665	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
LNN31_11670	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LNN31_11675	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LNN31_11680	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LNN31_11685	COG1846	Transcriptional regulator
LNN31_11685	COG0456	acetyltransferase
LNN31_11690	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LNN31_11705	COG2610	gluconate transmembrane transporter activity
LNN31_11725	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
LNN31_11730	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LNN31_11735	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LNN31_11745	COG0131	Imidazoleglycerol-phosphate dehydratase
LNN31_11750	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LNN31_11755	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LNN31_11760	COG0107	imidazoleglycerol-phosphate synthase activity
LNN31_11765	COG0140	phosphoribosyl-ATP diphosphatase activity
LNN31_11765	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LNN31_11785	COG2414	aldehyde ferredoxin oxidoreductase
LNN31_11810	COG1842	Phage shock protein A
LNN31_11820	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LNN31_11855	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LNN31_11860	COG0300	oxidoreductase activity
LNN31_11915	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LNN31_11950	COG0248	Ppx GppA phosphatase
LNN31_11955	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LNN31_11965	COG1811	Na channel or pump
LNN31_11975	COG1940	carbohydrate kinase activity
LNN31_11985	COG0577	efflux transmembrane transporter activity
LNN31_11995	COG1136	(ABC) transporter
LNN31_12005	COG1131	(ABC) transporter
LNN31_12010	COG1725	Transcriptional regulator
LNN31_12015	COG0840	transmembrane signaling receptor activity
LNN31_12030	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LNN31_12035	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LNN31_12040	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNN31_12050	COG0321	lipoyl(octanoyl) transferase activity
LNN31_12055	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNN31_12060	COG1028	Short-chain dehydrogenase reductase Sdr
LNN31_12070	COG1691	(AIR) carboxylase
LNN31_12075	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
LNN31_12080	COG3290	protein histidine kinase activity
LNN31_12080	COG0840	transmembrane signaling receptor activity
LNN31_12100	COG1606	tRNA processing
LNN31_12105	COG0519	Catalyzes the synthesis of GMP from XMP
LNN31_12105	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LNN31_12115	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LNN31_12120	COG2011	ABC-type metal ion transport system permease component
LNN31_12130	COG1144	Oxidoreductase
LNN31_12135	COG0674	pyruvate-flavodoxin oxidoreductase activity
LNN31_12140	COG1013	pyruvate-flavodoxin oxidoreductase activity
LNN31_12150	COG0436	Aminotransferase
LNN31_12155	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
LNN31_12160	COG0626	cystathionine gamma-synthase activity
LNN31_12165	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LNN31_12175	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LNN31_12180	COG0626	cystathionine gamma-synthase activity
LNN31_12185	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LNN31_12200	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LNN31_12210	COG0523	cobalamin synthesis protein
LNN31_12215	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LNN31_12220	COG5012	cobalamin binding
LNN31_12225	COG1959	2 iron, 2 sulfur cluster binding
LNN31_12245	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
LNN31_12245	COG3608	succinylglutamate desuccinylase aspartoacylase
LNN31_12260	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LNN31_12265	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
LNN31_12270	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
LNN31_12275	COG0535	radical SAM domain protein
LNN31_12285	COG2226	methyltransferase
LNN31_12345	COG5001	Diguanylate cyclase
LNN31_12345	COG5002	protein histidine kinase activity
LNN31_12345	COG3447	MASE1 domain protein
LNN31_12360	COG0745	RESPONSE REGULATOR receiver
LNN31_12365	COG0784	Response regulator, receiver
LNN31_12365	COG2205	protein histidine kinase activity
LNN31_12370	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
LNN31_12375	COG2201	protein-glutamate methylesterase activity
LNN31_12380	COG0840	transmembrane signaling receptor activity
LNN31_12385	COG0835	chemotaxis
LNN31_12390	COG0643	Histidine kinase
LNN31_12390	COG2198	Histidine kinase
LNN31_12400	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
LNN31_12420	COG0471	metal ion transport
LNN31_12430	COG5012	cobalamin binding
LNN31_12435	COG2211	Major facilitator Superfamily
LNN31_12445	COG1199	ATP-dependent helicase activity
LNN31_12460	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LNN31_12525	COG1234	tRNA 3'-trailer cleavage
LNN31_12605	COG4974	Belongs to the 'phage' integrase family
LNN31_12610	COG4974	Belongs to the 'phage' integrase family
LNN31_12615	COG4974	Belongs to the 'phage' integrase family
LNN31_12745	COG4372	Transposase
LNN31_12785	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNN31_12790	COG1120	ATPase activity
LNN31_12800	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
LNN31_12810	COG1051	belongs to the nudix hydrolase family
LNN31_12815	COG2033	superoxide reductase activity
LNN31_12820	COG3757	hydrolase, family 25
LNN31_12825	COG1606	tRNA processing
LNN31_12830	COG1132	(ABC) transporter
LNN31_12855	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LNN31_12860	COG2890	protein-(glutamine-N5) methyltransferase activity
LNN31_12870	COG1032	radical SAM domain protein
LNN31_12875	COG4536	flavin adenine dinucleotide binding
LNN31_12880	COG3835	regulator
LNN31_12885	COG1929	Belongs to the glycerate kinase type-1 family
LNN31_12895	COG3853	Toxic anion resistance protein (TelA)
LNN31_12905	COG1122	ATPase activity
LNN31_12910	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LNN31_12915	COG0310	cobalt ion transport
LNN31_12920	COG1686	Belongs to the peptidase S11 family
LNN31_12930	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LNN31_12965	COG5012	cobalamin binding
LNN31_12980	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LNN31_12990	COG5012	cobalamin binding
LNN31_13005	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LNN31_13025	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LNN31_13030	COG1910	domain protein
LNN31_13035	COG0303	'Molybdopterin
LNN31_13040	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LNN31_13045	COG0521	Mo-molybdopterin cofactor biosynthetic process
LNN31_13060	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LNN31_13065	COG0531	amino acid
LNN31_13080	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
LNN31_13105	COG3842	ATPase activity
LNN31_13115	COG1177	transmembrane transport
LNN31_13120	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LNN31_13165	COG0028	Belongs to the TPP enzyme family
LNN31_13170	COG0129	dihydroxy-acid dehydratase activity
LNN31_13175	COG0473	3-isopropylmalate dehydrogenase activity
LNN31_13180	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LNN31_13185	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LNN31_13190	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LNN31_13205	COG0737	Belongs to the 5'-nucleotidase family
LNN31_13210	COG4684	Psort location CytoplasmicMembrane, score
LNN31_13215	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LNN31_13235	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LNN31_13250	COG1215	transferase activity, transferring glycosyl groups
LNN31_13270	COG3842	ATPase activity
LNN31_13275	COG0446	pyridine nucleotide-disulphide oxidoreductase
LNN31_13280	COG1054	Belongs to the UPF0176 family
LNN31_13285	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LNN31_13290	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNN31_13290	COG0574	Belongs to the PEP-utilizing enzyme family
LNN31_13295	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LNN31_13300	COG0517	IMP dehydrogenase activity
LNN31_13305	COG1555	photosystem II stabilization
LNN31_13305	COG1596	polysaccharide export
LNN31_13320	COG0765	amino acid transport
LNN31_13325	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNN31_13335	COG0095	Lipoate-protein ligase
LNN31_13370	COG5002	protein histidine kinase activity
LNN31_13375	COG0745	RESPONSE REGULATOR receiver
LNN31_13380	COG0745	RESPONSE REGULATOR receiver
LNN31_13385	COG5002	protein histidine kinase activity
LNN31_13390	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LNN31_13395	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LNN31_13400	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LNN31_13405	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LNN31_13410	COG0137	argininosuccinate synthase activity
LNN31_13415	COG0165	Argininosuccinate lyase
LNN31_13435	COG0606	chelatase, subunit chli
LNN31_13655	COG1783	phage Terminase large subunit
LNN31_13760	COG0863	Belongs to the N(4) N(6)-methyltransferase family
LNN31_13790	COG0629	single-stranded DNA binding
LNN31_13805	COG3723	Recombinational DNA repair protein, rece pathway
LNN31_13850	COG3617	BRO family, N-terminal domain
LNN31_13860	COG1396	sequence-specific DNA binding
LNN31_13885	COG0606	chelatase, subunit chli
LNN31_13890	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LNN31_13895	COG4869	propanediol catabolic process
LNN31_13900	COG0497	DNA recombination
LNN31_13905	COG1438	arginine binding
LNN31_13910	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LNN31_13915	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
LNN31_13925	COG1722	exodeoxyribonuclease VII activity
LNN31_13930	COG1570	exodeoxyribonuclease VII activity
LNN31_13935	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LNN31_13960	COG2890	protein-(glutamine-N5) methyltransferase activity
LNN31_13965	COG0254	rRNA binding
LNN31_13970	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LNN31_13995	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LNN31_14005	COG0632	four-way junction helicase activity
LNN31_14015	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LNN31_14025	COG1739	Uncharacterized protein family UPF0029
LNN31_14030	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LNN31_14075	COG3328	transposase activity
LNN31_14080	COG0301	tRNA thio-modification
LNN31_14085	COG1104	cysteine desulfurase activity
LNN31_14090	COG0717	Belongs to the dCTP deaminase family
LNN31_14095	COG1193	negative regulation of DNA recombination
LNN31_14100	COG0826	peptidase U32
LNN31_14105	COG1819	glycosyl
LNN31_14120	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LNN31_14125	COG0006	proline dipeptidase activity
LNN31_14135	COG0037	tRNA processing
LNN31_14140	COG0745	RESPONSE REGULATOR receiver
LNN31_14145	COG5002	protein histidine kinase activity
LNN31_14175	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
LNN31_14180	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LNN31_14215	COG2188	Transcriptional regulator
LNN31_14225	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LNN31_14230	COG0546	phosphoglycolate phosphatase activity
LNN31_14235	COG0613	PHP domain protein
LNN31_14245	COG0446	pyridine nucleotide-disulphide oxidoreductase
LNN31_14250	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LNN31_14255	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LNN31_14260	COG0095	Lipoate-protein ligase
LNN31_14265	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNN31_14275	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNN31_14275	COG0022	dehydrogenase e1 component
LNN31_14280	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LNN31_14285	COG0191	fructose-bisphosphate aldolase activity
LNN31_14295	COG3958	Transketolase
LNN31_14300	COG3959	Transketolase, thiamine diphosphate binding domain
LNN31_14360	COG3344	reverse transcriptase
LNN31_14380	COG0191	fructose-bisphosphate aldolase activity
LNN31_14385	COG0564	pseudouridine synthase activity
LNN31_14390	COG3331	DNA recombination
LNN31_14395	COG1854	S-ribosylhomocysteine lyase activity
LNN31_14415	COG2223	nitrite transmembrane transporter activity
LNN31_14425	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LNN31_14445	COG0302	gtp cyclohydrolase
LNN31_14450	COG1418	mRNA catabolic process
LNN31_14455	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LNN31_14460	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LNN31_14460	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LNN31_14470	COG0442	prolyl-tRNA aminoacylation
LNN31_14475	COG0222	ribosome binding
LNN31_14480	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LNN31_14485	COG0081	regulation of translation
LNN31_14495	COG0250	Participates in transcription elongation, termination and antitermination
LNN31_14510	COG0456	acetyltransferase
LNN31_14525	COG1876	peptidase activity
LNN31_14560	COG1151	hydroxylamine reductase activity
LNN31_14590	COG2871	sodium ion transport
LNN31_14605	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LNN31_14615	COG1120	ATPase activity
LNN31_14620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNN31_14640	COG1120	ATPase activity
LNN31_14645	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNN31_14660	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
LNN31_14685	COG1342	Belongs to the UPF0251 family
LNN31_14740	COG0157	Belongs to the NadC ModD family
LNN31_14750	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LNN31_14755	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LNN31_14765	COG3585	molybdate ion transport
LNN31_14785	COG0310	cobalt ion transport
LNN31_14790	COG1122	ATPase activity
LNN31_14820	COG1331	Highly conserved protein containing a thioredoxin domain
LNN31_14830	COG1131	(ABC) transporter
LNN31_14845	COG1131	(ABC) transporter
LNN31_14850	COG1725	Transcriptional regulator
LNN31_14860	COG0419	ATPase involved in DNA repair
LNN31_14865	COG0420	3'-5' exonuclease activity
LNN31_14895	COG3279	Response regulator of the LytR AlgR family
LNN31_14910	COG0826	peptidase U32
LNN31_14915	COG4122	O-methyltransferase activity
LNN31_14920	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LNN31_14925	COG3679	Belongs to the UPF0342 family
LNN31_14930	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LNN31_14935	COG0735	belongs to the Fur family
LNN31_14940	COG1489	DNA binding
LNN31_14945	COG3906	Belongs to the UPF0473 family
LNN31_14955	COG0667	Aldo Keto reductase
LNN31_14960	COG4472	Bacterial protein of unknown function (DUF965)
LNN31_14965	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LNN31_14970	COG0628	permease
LNN31_14995	COG1959	2 iron, 2 sulfur cluster binding
LNN31_15000	COG0539	negative regulation of cytoplasmic translation
LNN31_15000	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LNN31_15010	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
LNN31_15015	COG2081	HI0933 family
LNN31_15020	COG1737	Transcriptional regulator
LNN31_15025	COG2264	protein methyltransferase activity
LNN31_15035	COG1187	pseudouridine synthase activity
LNN31_15040	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LNN31_15045	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
LNN31_15050	COG1994	Peptidase M50
LNN31_15055	COG0494	nUDIX hydrolase
LNN31_15060	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LNN31_15065	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LNN31_15075	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LNN31_15080	COG0772	Belongs to the SEDS family
LNN31_15085	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LNN31_15095	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LNN31_15100	COG0768	penicillin binding
LNN31_15110	COG0275	rRNA processing
LNN31_15115	COG2001	Belongs to the MraZ family
LNN31_15120	COG3830	Belongs to the UPF0237 family
LNN31_15125	COG2848	UPF0210 protein
LNN31_15145	COG3835	regulator
LNN31_15180	COG4584	PFAM Integrase catalytic
LNN31_15210	COG4584	PFAM Integrase catalytic
LNN31_15215	COG1484	DNA-dependent DNA replication
LNN31_15240	COG0840	transmembrane signaling receptor activity
LNN31_15270	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LNN31_15280	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LNN31_15285	COG1615	UPF0182 protein
LNN31_15290	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
LNN31_15295	COG1136	(ABC) transporter
LNN31_15300	COG0577	efflux transmembrane transporter activity
LNN31_15300	COG1136	(ABC) transporter
LNN31_15325	COG4656	Part of a membrane complex involved in electron transport
LNN31_15330	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LNN31_15335	COG3404	Formiminotransferase-cyclodeaminase
LNN31_15340	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LNN31_15350	COG0252	asparaginase activity
LNN31_15370	COG5012	cobalamin binding
LNN31_15375	COG0471	metal ion transport
LNN31_15380	COG2211	Major facilitator Superfamily
LNN31_15395	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LNN31_15400	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LNN31_15405	COG0049	tRNA binding
LNN31_15410	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LNN31_15415	COG1358	cellular component organization or biogenesis
LNN31_15420	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LNN31_15425	COG0085	RNA polymerase activity
LNN31_15435	COG0765	amino acid transport
LNN31_15440	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LNN31_15465	COG1461	Dihydroxyacetone kinase
LNN31_15470	COG2376	Dihydroxyacetone kinase
LNN31_15475	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
LNN31_15480	COG3290	protein histidine kinase activity
LNN31_15480	COG3829	transcription factor binding
LNN31_15485	COG0698	ribose 5-phosphate isomerase
LNN31_15515	COG1484	DNA-dependent DNA replication
LNN31_15520	COG4584	PFAM Integrase catalytic
LNN31_15590	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
LNN31_15595	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
LNN31_15610	COG4115	mRNA cleavage
LNN31_15620	COG3875	lactate racemase activity
LNN31_15625	COG1620	l-lactate permease
LNN31_15630	COG0277	FAD linked oxidase domain protein
LNN31_15645	COG2186	Transcriptional regulator
LNN31_15655	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LNN31_15660	COG2235	arginine
LNN31_15665	COG4466	Protein conserved in bacteria
LNN31_15670	COG0546	phosphoglycolate phosphatase activity
LNN31_15680	COG0077	Prephenate dehydratase
LNN31_15680	COG1605	Chorismate mutase
LNN31_15685	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LNN31_15705	COG0488	(ABC) transporter
LNN31_15720	COG2188	Transcriptional regulator
LNN31_15725	COG5012	cobalamin binding
LNN31_15730	COG2116	formate transmembrane transporter activity
LNN31_15735	COG5012	cobalamin binding
LNN31_15740	COG2217	Heavy metal translocating P-type atpase
LNN31_15745	COG0640	Transcriptional regulator
LNN31_15760	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LNN31_15820	COG2188	Transcriptional regulator
LNN31_15825	COG5012	cobalamin binding
LNN31_15830	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
LNN31_15835	COG2116	formate transmembrane transporter activity
LNN31_15840	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LNN31_15850	COG3481	metal-dependent phosphohydrolase, HD sub domain
LNN31_15855	COG0436	Aminotransferase
LNN31_15895	COG0347	Belongs to the P(II) protein family
LNN31_15900	COG0347	Belongs to the P(II) protein family
LNN31_15940	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LNN31_15955	COG0347	Belongs to the P(II) protein family
LNN31_15960	COG0004	ammonium transporteR
LNN31_15965	COG0347	Belongs to the P(II) protein family
LNN31_15970	COG0004	ammonium transporteR
LNN31_15975	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LNN31_15980	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LNN31_15985	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LNN31_16005	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LNN31_16020	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
LNN31_16030	COG1054	Belongs to the UPF0176 family
LNN31_16035	COG0745	RESPONSE REGULATOR receiver
LNN31_16040	COG5002	protein histidine kinase activity
LNN31_16065	COG0840	transmembrane signaling receptor activity
LNN31_16070	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LNN31_16075	COG5012	cobalamin binding
LNN31_16080	COG5598	trimethylamine methyltransferase
LNN31_16085	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LNN31_16090	COG1962	PFAM Tetrahydromethanopterin S-methyltransferase MtrH subunit
LNN31_16115	COG0306	phosphate transporter
LNN31_16130	COG5012	cobalamin binding
LNN31_16140	COG0070	glutamate synthase
LNN31_16140	COG0069	glutamate synthase activity
LNN31_16140	COG0067	glutamate synthase
LNN31_16145	COG0493	'glutamate synthase
LNN31_16165	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LNN31_16170	COG3290	protein histidine kinase activity
LNN31_16185	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LNN31_16190	COG5012	cobalamin binding
LNN31_16210	COG3706	GGDEF domain
LNN31_16215	COG1454	alcohol dehydrogenase
LNN31_16235	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LNN31_16240	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LNN31_16260	COG1785	Belongs to the alkaline phosphatase family
LNN31_16265	COG2197	response regulator
LNN31_16270	COG4585	Histidine kinase
LNN31_16275	COG1131	(ABC) transporter
LNN31_16300	COG1162	GTPase activity
LNN31_16320	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LNN31_16380	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LNN31_16420	COG2203	Gaf domain
LNN31_16420	COG3706	GGDEF domain
LNN31_16420	COG4251	negative regulation of phosphorylation
LNN31_16420	COG5001	Diguanylate cyclase
LNN31_16425	COG0076	glutamate decarboxylase activity
LNN31_16520	COG2003	Belongs to the UPF0758 family
LNN31_16555	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LNN31_16570	COG3885	ferrous iron binding
LNN31_16570	COG2078	PFAM AMMECR1 domain protein
LNN31_16575	COG0148	phosphopyruvate hydratase activity
LNN31_16590	COG0210	DNA helicase
LNN31_16610	COG4106	trans-aconitate 2-methyltransferase activity
LNN31_16615	COG0583	DNA-binding transcription factor activity
LNN31_16635	COG0674	pyruvate-flavodoxin oxidoreductase activity
LNN31_16635	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LNN31_16640	COG1013	pyruvate-flavodoxin oxidoreductase activity
LNN31_16645	COG2033	superoxide reductase activity
LNN31_16665	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LNN31_16715	COG2059	Chromate
LNN31_16815	COG0084	hydrolase, TatD family'
LNN31_16820	COG0617	tRNA 3'-terminal CCA addition
LNN31_16830	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LNN31_16835	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LNN31_16855	COG4129	membrane
LNN31_16865	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
LNN31_16875	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
LNN31_16885	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
LNN31_16890	COG0390	transport system, permease component
LNN31_16895	COG1122	ATPase activity
LNN31_16900	COG0778	Nitroreductase
LNN31_16900	COG1478	Catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives
LNN31_16940	COG3706	GGDEF domain
LNN31_16970	COG2200	EAL domain
LNN31_16980	COG2199	diguanylate cyclase activity
LNN31_16980	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LNN31_17010	COG2226	methyltransferase
LNN31_17025	COG0010	Belongs to the arginase family
LNN31_17030	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LNN31_17035	COG1982	Orn Lys Arg decarboxylase major
LNN31_17050	COG3437	response regulator, receiver
LNN31_17060	COG0569	domain protein
LNN31_17070	COG3973	AAA domain
LNN31_17080	COG5012	cobalamin binding
LNN31_17105	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LNN31_17110	COG1121	(ABC) transporter
LNN31_17115	COG0803	Belongs to the bacterial solute-binding protein 9 family
LNN31_17115	COG3443	Belongs to the bacterial solute-binding protein 9 family
LNN31_17130	COG0351	phosphomethylpyrimidine kinase
LNN31_17130	COG0352	thiamine-phosphate diphosphorylase activity
LNN31_17135	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LNN31_17145	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
LNN31_17150	COG1148	4fe-4S ferredoxin, iron-sulfur binding domain protein
LNN31_17150	COG2878	Part of a membrane complex involved in electron transport
LNN31_17155	COG4657	Part of a membrane complex involved in electron transport
LNN31_17160	COG4660	Part of a membrane complex involved in electron transport
LNN31_17165	COG4659	FMN binding
LNN31_17170	COG4658	electron transport chain
LNN31_17175	COG4656	Part of a membrane complex involved in electron transport
LNN31_17185	COG0785	Cytochrome C biogenesis protein
LNN31_17190	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LNN31_17210	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LNN31_17215	COG3118	belongs to the thioredoxin family
LNN31_17230	COG1120	ATPase activity
LNN31_17235	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LNN31_17270	COG1132	(ABC) transporter
LNN31_17275	COG4988	ABC transporter
LNN31_17280	COG4608	Belongs to the ABC transporter superfamily
LNN31_17285	COG0444	Belongs to the ABC transporter superfamily
LNN31_17290	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LNN31_17295	COG0601	transmembrane transport
LNN31_17305	COG1132	(ABC) transporter
LNN31_17315	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LNN31_17320	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
LNN31_17325	COG0733	neurotransmitter:sodium symporter activity
LNN31_17330	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LNN31_17335	COG1328	CTP reductase activity
LNN31_17335	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LNN31_17355	COG0477	Major facilitator Superfamily
LNN31_17365	COG3437	response regulator, receiver
LNN31_17370	COG1045	serine acetyltransferase
LNN31_17385	COG1027	Aspartate ammonia-lyase
LNN31_17400	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LNN31_17405	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LNN31_17410	COG1876	peptidase activity
LNN31_17415	COG0697	spore germination
LNN31_17420	COG1917	Cupin 2, conserved barrel domain protein
LNN31_17420	COG2207	Transcriptional regulator
LNN31_17430	COG3835	regulator
LNN31_17435	COG1454	alcohol dehydrogenase
LNN31_17445	COG2199	diguanylate cyclase activity
LNN31_17455	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LNN31_17465	COG3706	GGDEF domain
LNN31_17470	COG0387	Pfam Sodium calcium exchanger
LNN31_17480	COG1028	Short-chain dehydrogenase reductase Sdr
LNN31_17490	COG3706	GGDEF domain
LNN31_17510	COG2261	transglycosylase associated protein
LNN31_17515	COG2357	RelA SpoT domain protein
LNN31_17520	COG1592	Rubrerythrin
LNN31_17535	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LNN31_17540	COG3608	succinylglutamate desuccinylase aspartoacylase
LNN31_17540	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
LNN31_17565	COG3875	lactate racemase activity
LNN31_17570	COG0281	malic enzyme
LNN31_17575	COG0126	phosphoglycerate kinase activity
LNN31_17585	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNN31_17595	COG0508	dehydrogenase complex catalyzes the overall conversion of
LNN31_17595	COG0022	dehydrogenase e1 component
LNN31_17600	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LNN31_17605	COG1250	3-hydroxyacyl-CoA dehydrogenase
LNN31_17640	COG0840	transmembrane signaling receptor activity
LNN31_17690	COG1247	-acetyltransferase
LNN31_17700	COG2378	regulation of single-species biofilm formation
LNN31_17705	COG0584	glycerophosphoryl diester phosphodiesterase
LNN31_17710	COG0584	glycerophosphoryl diester phosphodiesterase
LNN31_17720	COG1611	Belongs to the LOG family
LNN31_17730	COG1733	regulation of RNA biosynthetic process
LNN31_17745	COG3620	sequence-specific DNA binding
LNN31_17750	COG0574	Belongs to the PEP-utilizing enzyme family
LNN31_17750	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LNN31_17760	COG0765	amino acid transport
LNN31_17780	COG2208	phosphoserine phosphatase activity
LNN31_17780	COG2770	Histidine kinase
LNN31_17785	COG0534	Mate efflux family protein
LNN31_17790	COG0745	RESPONSE REGULATOR receiver
LNN31_17795	COG5002	protein histidine kinase activity
LNN31_17820	COG0534	Mate efflux family protein
LNN31_17830	COG3384	dioxygenase
LNN31_17840	COG5012	cobalamin binding
LNN31_17845	COG2824	Alkylphosphonate utilization operon protein PhnA
LNN31_17850	COG2972	Histidine kinase
LNN31_17850	COG0745	RESPONSE REGULATOR receiver
LNN31_17860	COG3279	Response regulator of the LytR AlgR family
LNN31_17865	COG3706	GGDEF domain
LNN31_17870	COG3344	reverse transcriptase
LNN31_17880	COG1132	(ABC) transporter
LNN31_17905	COG1028	Short-chain dehydrogenase reductase Sdr
LNN31_17925	COG0667	Aldo Keto reductase
LNN31_17935	COG0110	maltose O-acetyltransferase activity
LNN31_17945	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
LNN31_17950	COG1691	(AIR) carboxylase
LNN31_17955	COG0789	Transcriptional regulator
LNN31_17960	COG0667	Aldo Keto reductase
LNN31_17970	COG3706	GGDEF domain
LNN31_17975	COG1028	Short-chain dehydrogenase reductase Sdr
LNN31_18000	COG5002	protein histidine kinase activity
LNN31_18000	COG3850	Histidine kinase
LNN31_18010	COG2199	diguanylate cyclase activity
LNN31_18025	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LNN31_18055	COG2814	Major facilitator Superfamily
LNN31_18060	COG1309	transcriptional regulator
LNN31_18070	COG2814	Major facilitator Superfamily
LNN31_18105	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LNN31_18115	COG3588	fructose-bisphosphate aldolase
LNN31_18130	COG3620	sequence-specific DNA binding
LNN31_18170	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LNN31_18175	COG1357	PFAM Pentapeptide repeats (8 copies)
LNN31_18195	COG0596	Alpha beta hydrolase
LNN31_18255	COG3760	aminoacyl-tRNA metabolism involved in translational fidelity
LNN31_18260	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LNN31_18270	COG1131	(ABC) transporter
LNN31_18290	COG4716	Myosin-crossreactive antigen
LNN31_18295	COG1309	transcriptional regulator
LNN31_18305	COG0477	Major facilitator Superfamily
LNN31_18325	COG1136	(ABC) transporter
LNN31_18325	COG0577	efflux transmembrane transporter activity
LNN31_18340	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LNN31_18355	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LNN31_18360	COG0697	spore germination
LNN31_18370	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LNN31_18430	COG2801	Transposase and inactivated derivatives
LNN31_18540	COG2801	Transposase and inactivated derivatives
LNN31_18565	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LNN31_18570	COG2217	Heavy metal translocating P-type atpase
LNN31_18595	COG0583	DNA-binding transcription factor activity
LNN31_18620	COG3437	response regulator, receiver
LNN31_18620	COG2770	Histidine kinase
LNN31_18645	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LNN31_18650	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LNN31_18710	COG2207	Transcriptional regulator
LNN31_18710	COG3708	Transcriptional regulator
LNN31_18735	COG0488	(ABC) transporter
LNN31_18860	COG0740	serine-type endopeptidase activity
LNN31_19005	COG1396	sequence-specific DNA binding
LNN31_19030	COG4974	Belongs to the 'phage' integrase family
LNN31_19045	COG3344	reverse transcriptase
LNN31_19050	COG1511	domain protein
LNN31_19055	COG3118	belongs to the thioredoxin family
LNN31_19080	COG1774	PSP1 C-terminal conserved region
LNN31_19095	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LNN31_19105	COG3118	belongs to the thioredoxin family
LNN31_19110	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LNN31_19110	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LNN31_19115	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LNN31_19120	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LNN31_19125	COG0305	Participates in initiation and elongation during chromosome replication
LNN31_19135	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
LNN31_19140	COG4241	membrane
LNN31_19150	COG0629	single-stranded DNA binding
LNN31_19155	COG0360	Binds together with S18 to 16S ribosomal RNA
LNN31_19165	COG4481	Protein conserved in bacteria
LNN31_19170	COG0668	transmembrane transport
LNN31_19185	COG1475	DNA binding
LNN31_19190	COG1192	Involved in chromosome partitioning
LNN31_19195	COG0357	Ribosomal RNA small subunit methyltransferase G
LNN31_19205	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LNN31_19210	COG1847	R3H domain protein
LNN31_19215	COG0706	membrane insertase activity
LNN31_19220	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LNN31_19225	COG0594	ribonuclease P activity