Acear_0001 SM00382 ATPases associated with a variety of cellular activities Acear_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Acear_0002 SM00480 DNA polymerase III beta subunit Acear_0003 SM00363 S4 RNA-binding domain Acear_0007 SM00387 Histidine kinase-like ATPases Acear_0007 SM00433 TopoisomeraseII Acear_0008 SM00434 DNA Topoisomerase IV Acear_0011 SM00899 Acear_0011 Acear_0014 SM00529 Helix-turn-helix diphteria tox regulatory element Acear_0030 SM00382 ATPases associated with a variety of cellular activities Acear_0032 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acear_0032 SM00493 Acear_0032 Acear_0039 SM00382 ATPases associated with a variety of cellular activities Acear_0041 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0041 SM01240 Acear_0041 Acear_0050 SM00966 SpoVT / AbrB like domain Acear_0051 SM00933 Acear_0051 Acear_0057 SM00650 Ribosomal RNA adenine dimethylases Acear_0060 SM00346 helix_turn_helix isocitrate lyase regulation Acear_0061 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Acear_0065 SM00899 Acear_0065 Acear_0078 SM00257 Lysin motif Acear_0079 SM00849 Metallo-beta-lactamase superfamily Acear_0080 SM00257 Lysin motif Acear_0085 SM00422 helix_turn_helix, mercury resistance Acear_0088 SM01400 Acear_0088 Acear_0092 SM00487 DEAD-like helicases superfamily Acear_0092 SM00490 helicase superfamily c-terminal domain Acear_0092 SM00982 Acear_0092 Acear_0092 SM01058 CarD-like/TRCF domain Acear_0093 SM00966 SpoVT / AbrB like domain Acear_0096 SM00936 Penicillin-binding protein 5, C-terminal domain Acear_0101 SM00316 Ribosomal protein S1-like RNA-binding domain Acear_0101 SM00732 Likely ribonuclease with RNase H fold. Acear_0102 SM00316 Ribosomal protein S1-like RNA-binding domain Acear_0108 SM00331 Sigma factor PP2C-like phosphatases Acear_0109 SM00977 TilS substrate C-terminal domain Acear_0111 SM00382 ATPases associated with a variety of cellular activities Acear_0131 SM00382 ATPases associated with a variety of cellular activities Acear_0131 SM01086 C-terminal, D2-small domain, of ClpB protein Acear_0132 SM00382 ATPases associated with a variety of cellular activities Acear_0134 SM01058 CarD-like/TRCF domain Acear_0135 SM00670 Large family of predicted nucleotide-binding domains Acear_0138 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0141 SM00840 Acear_0141 Acear_0142 SM00535 Ribonuclease III family Acear_0144 SM00967 RNA 2'-O ribose methyltransferase substrate binding Acear_0150 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Acear_0150 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Acear_0151 SM00649 Ribosomal protein L11/L12 Acear_0156 SM00663 RNA polymerase I subunit A N-terminus Acear_0159 SM00838 Elongation factor G C-terminus Acear_0159 SM00889 Elongation factor G, domain IV Acear_0161 SM01403 Acear_0161 Acear_0165 SM01382 Acear_0165 Acear_0165 SM01383 Acear_0165 Acear_0168 SM00322 K homology RNA-binding domain Acear_0172 SM01374 Acear_0172 Acear_0173 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Acear_0184 SM00316 Ribosomal protein S1-like RNA-binding domain Acear_0188 SM00363 S4 RNA-binding domain Acear_0188 SM01390 Acear_0188 Acear_0189 SM00662 RNA polymerases D Acear_0191 SM00382 ATPases associated with a variety of cellular activities Acear_0192 SM00382 ATPases associated with a variety of cellular activities Acear_0199 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_0208 SM00917 LeuA allosteric (dimerisation) domain Acear_0211 SM01329 Acear_0211 Acear_0212 SM00917 LeuA allosteric (dimerisation) domain Acear_0218 SM00028 Tetratricopeptide repeats Acear_0219 SM00481 DNA polymerase alpha chain like domain Acear_0220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_0225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_0225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_0227 SM00902 Iron hydrogenase small subunit Acear_0227 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Acear_0228 SM00387 Histidine kinase-like ATPases Acear_0233 SM00858 Acear_0233 Acear_0235 SM00382 ATPases associated with a variety of cellular activities Acear_0235 SM00448 cheY-homologous receiver domain Acear_0242 SM00487 DEAD-like helicases superfamily Acear_0242 SM00490 helicase superfamily c-terminal domain Acear_0247 SM00327 von Willebrand factor (vWF) type A domain Acear_0254 SM00028 Tetratricopeptide repeats Acear_0265 SM01001 AIR carboxylase Acear_0270 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Acear_0271 SM00902 Iron hydrogenase small subunit Acear_0271 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Acear_0272 SM00062 Bacterial periplasmic substrate-binding proteins Acear_0272 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Acear_0274 SM00382 ATPases associated with a variety of cellular activities Acear_0276 SM00957 SecA DEAD-like domain Acear_0276 SM00958 SecA preprotein cross-linking domain Acear_0284 SM00861 Transketolase, pyrimidine binding domain Acear_0285 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acear_0285 SM00245 tail specific protease Acear_0287 SM00487 DEAD-like helicases superfamily Acear_0287 SM00490 helicase superfamily c-terminal domain Acear_0288 SM00382 ATPases associated with a variety of cellular activities Acear_0289 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acear_0289 SM00465 GIY-YIG type nucleases (URI domain) Acear_0291 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0304 SM00465 GIY-YIG type nucleases (URI domain) Acear_0308 SM01066 Carbohydrate binding domain Acear_0314 SM00481 DNA polymerase alpha chain like domain Acear_0316 SM00481 DNA polymerase alpha chain like domain Acear_0322 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Acear_0326 SM01192 Acear_0326 Acear_0326 SM01193 Acear_0326 Acear_0331 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_0332 SM00316 Ribosomal protein S1-like RNA-binding domain Acear_0332 SM00357 Cold shock protein domain Acear_0332 SM00955 Acear_0332 Acear_0335 SM00387 Histidine kinase-like ATPases Acear_0335 SM00388 His Kinase A (phosphoacceptor) domain Acear_0339 SM00507 HNH nucleases Acear_0340 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Acear_0340 SM00475 5'-3' exonuclease Acear_0340 SM00482 DNA polymerase A domain Acear_0346 SM00851 MGS-like domain Acear_0354 SM01018 B12 binding domain Acear_0357 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_0364 SM00900 Acear_0364 Acear_0372 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Acear_0372 SM01232 Acear_0372 Acear_0373 SM00382 ATPases associated with a variety of cellular activities Acear_0374 SM00382 ATPases associated with a variety of cellular activities Acear_0381 SM00849 Metallo-beta-lactamase superfamily Acear_0383 SM00357 Cold shock protein domain Acear_0387 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Acear_0395 SM00967 RNA 2'-O ribose methyltransferase substrate binding Acear_0398 SM00873 B3/4 domain Acear_0398 SM00874 tRNA synthetase B5 domain Acear_0398 SM00896 Ferredoxin-fold anticodon binding domain Acear_0401 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acear_0401 SM00481 DNA polymerase alpha chain like domain Acear_0401 SM00483 DNA polymerase X family Acear_0403 SM00463 Small MutS-related domain Acear_0403 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Acear_0403 SM00534 ATPase domain of DNA mismatch repair MUTS family Acear_0406 SM00363 S4 RNA-binding domain Acear_0411 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Acear_0414 SM00732 Likely ribonuclease with RNase H fold. Acear_0427 SM00257 Lysin motif Acear_0428 SM01321 Acear_0428 Acear_0433 SM00966 SpoVT / AbrB like domain Acear_0434 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0434 SM00382 ATPases associated with a variety of cellular activities Acear_0439 SM01018 B12 binding domain Acear_0441 SM00091 PAS domain Acear_0441 SM00382 ATPases associated with a variety of cellular activities Acear_0444 SM01018 B12 binding domain Acear_0446 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_0446 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_0448 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0458 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Acear_0459 SM01092 CO dehydrogenase flavoprotein C-terminal domain Acear_0465 SM00382 ATPases associated with a variety of cellular activities Acear_0466 SM00852 Probable molybdopterin binding domain Acear_0483 SM00091 PAS domain Acear_0483 SM00382 ATPases associated with a variety of cellular activities Acear_0491 SM00796 Allophanate hydrolase subunit 1 Acear_0492 SM00797 Allophanate hydrolase subunit 2 Acear_0500 SM00382 ATPases associated with a variety of cellular activities Acear_0500 SM00994 ClpX C4-type zinc finger Acear_0500 SM01086 C-terminal, D2-small domain, of ClpB protein Acear_0501 SM00382 ATPases associated with a variety of cellular activities Acear_0502 SM00382 ATPases associated with a variety of cellular activities Acear_0502 SM00464 Found in ATP-dependent protease La (LON) Acear_0504 SM00903 Flavin reductase like domain Acear_0507 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_0513 SM00091 PAS domain Acear_0513 SM00382 ATPases associated with a variety of cellular activities Acear_0516 SM00870 Acear_0516 Acear_0517 SM00919 Malic enzyme, NAD binding domain Acear_0517 SM01274 Acear_0517 Acear_0531 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0535 SM00900 Acear_0535 Acear_0545 SM01004 Delta-aminolevulinic acid dehydratase Acear_0546 SM00344 helix_turn_helix ASNC type Acear_0565 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_0567 SM00316 Ribosomal protein S1-like RNA-binding domain Acear_0572 SM01103 Acear_0572 Acear_0573 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Acear_0578 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_0583 SM00849 Metallo-beta-lactamase superfamily Acear_0585 SM00387 Histidine kinase-like ATPases Acear_0588 SM00793 Accessory gene regulator B Acear_0600 SM00838 Elongation factor G C-terminus Acear_0601 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_0605 SM00271 DnaJ molecular chaperone homology domain Acear_0608 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_0617 SM00322 K homology RNA-binding domain Acear_0618 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_0620 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0620 SM01091 Transporter associated domain Acear_0625 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0625 SM00924 MgtE intracellular N domain Acear_0626 SM01133 Acear_0626 Acear_0631 SM00382 ATPases associated with a variety of cellular activities Acear_0632 SM00382 ATPases associated with a variety of cellular activities Acear_0635 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Acear_0644 SM00487 DEAD-like helicases superfamily Acear_0644 SM00490 helicase superfamily c-terminal domain Acear_0647 SM00487 DEAD-like helicases superfamily Acear_0647 SM00490 helicase superfamily c-terminal domain Acear_0654 SM00530 Helix-turn-helix XRE-family like proteins Acear_0657 SM00248 ankyrin repeats Acear_0669 SM00382 ATPases associated with a variety of cellular activities Acear_0670 SM00382 ATPases associated with a variety of cellular activities Acear_0673 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acear_0685 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_0690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_0692 SM00400 zinc finger Acear_0692 SM00493 Acear_0692 Acear_0702 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acear_0703 SM00382 ATPases associated with a variety of cellular activities Acear_0707 SM01323 Acear_0707 Acear_0716 SM00487 DEAD-like helicases superfamily Acear_0716 SM00490 helicase superfamily c-terminal domain Acear_0716 SM00910 Acear_0716 Acear_0718 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_0718 SM00954 Region found in RelA / SpoT proteins Acear_0720 SM00849 Metallo-beta-lactamase superfamily Acear_0721 SM00028 Tetratricopeptide repeats Acear_0725 SM00382 ATPases associated with a variety of cellular activities Acear_0732 SM00028 Tetratricopeptide repeats Acear_0740 SM00740 Acear_0740 Acear_0752 SM00842 Cell division protein FtsA Acear_0753 SM00864 Tubulin/FtsZ family, GTPase domain Acear_0753 SM00865 Tubulin/FtsZ family, C-terminal domain Acear_0764 SM00857 Resolvase, N terminal domain Acear_0770 SM00382 ATPases associated with a variety of cellular activities Acear_0780 SM00382 ATPases associated with a variety of cellular activities Acear_0783 SM00382 ATPases associated with a variety of cellular activities Acear_0785 SM00903 Flavin reductase like domain Acear_0795 SM00382 ATPases associated with a variety of cellular activities Acear_0819 SM00487 DEAD-like helicases superfamily Acear_0828 SM00642 Alpha-amylase domain Acear_0828 SM01065 Starch binding domain Acear_0848 SM00855 Phosphoglycerate mutase family Acear_0855 SM00448 cheY-homologous receiver domain Acear_0855 SM00862 Transcriptional regulatory protein, C terminal Acear_0856 SM00091 PAS domain Acear_0856 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_0856 SM00387 Histidine kinase-like ATPases Acear_0856 SM00388 His Kinase A (phosphoacceptor) domain Acear_0860 SM00052 Putative diguanylate phosphodiesterase Acear_0860 SM00267 diguanylate cyclase Acear_0861 SM00448 cheY-homologous receiver domain Acear_0861 SM00862 Transcriptional regulatory protein, C terminal Acear_0865 SM00382 ATPases associated with a variety of cellular activities Acear_0868 SM00670 Large family of predicted nucleotide-binding domains Acear_0869 SM00091 PAS domain Acear_0869 SM00387 Histidine kinase-like ATPases Acear_0870 SM00267 diguanylate cyclase Acear_0871 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Acear_0871 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Acear_0871 SM00091 PAS domain Acear_0871 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_0873 SM00267 diguanylate cyclase Acear_0879 SM00363 S4 RNA-binding domain Acear_0891 SM00363 S4 RNA-binding domain Acear_0897 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Acear_0898 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Acear_0899 SM00851 MGS-like domain Acear_0899 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Acear_0920 SM00966 SpoVT / AbrB like domain Acear_0922 SM00091 PAS domain Acear_0922 SM00382 ATPases associated with a variety of cellular activities Acear_0929 SM01018 B12 binding domain Acear_0932 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_0932 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_0937 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_0939 SM00354 helix_turn _helix lactose operon repressor Acear_0949 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Acear_0951 SM00849 Metallo-beta-lactamase superfamily Acear_0952 SM00829 Enoylreductase Acear_0953 SM01018 B12 binding domain Acear_0955 SM00919 Malic enzyme, NAD binding domain Acear_0955 SM01274 Acear_0955 Acear_0959 SM00831 Cation transporter/ATPase, N-terminus Acear_0960 SM00260 Two component signalling adaptor domain Acear_0961 SM00073 Histidine Phosphotransfer domain Acear_0961 SM00260 Two component signalling adaptor domain Acear_0961 SM00387 Histidine kinase-like ATPases Acear_0961 SM01231 Acear_0961 Acear_0962 SM00448 cheY-homologous receiver domain Acear_0963 SM00448 cheY-homologous receiver domain Acear_0964 SM00434 DNA Topoisomerase IV Acear_0969 SM00387 Histidine kinase-like ATPases Acear_0969 SM00433 TopoisomeraseII Acear_0977 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Acear_0979 SM00091 PAS domain Acear_0979 SM00382 ATPases associated with a variety of cellular activities Acear_0982 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Acear_0996 SM00248 ankyrin repeats Acear_0997 SM00091 PAS domain Acear_0997 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_1015 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Acear_1016 SM00822 Acear_1016 Acear_1017 SM00823 Phosphopantetheine attachment site Acear_1019 SM00825 Beta-ketoacyl synthase Acear_1020 SM00358 Double-stranded RNA binding motif Acear_1020 SM00535 Ribonuclease III family Acear_1033 SM00563 Phosphate acyltransferases Acear_1034 SM00387 Histidine kinase-like ATPases Acear_1035 SM00448 cheY-homologous receiver domain Acear_1035 SM00850 LytTr DNA-binding domain Acear_1037 SM00316 Ribosomal protein S1-like RNA-binding domain Acear_1045 SM00382 ATPases associated with a variety of cellular activities Acear_1046 SM01207 Acear_1046 Acear_1051 SM01018 B12 binding domain Acear_1053 SM01018 B12 binding domain Acear_1066 SM00411 bacterial (prokaryotic) histone like domain Acear_1089 SM00507 HNH nucleases Acear_1107 SM00357 Cold shock protein domain Acear_1108 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acear_1110 SM00257 Lysin motif Acear_1112 SM00966 SpoVT / AbrB like domain Acear_1113 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acear_1120 SM00646 Acear_1120 Acear_1128 SM00530 Helix-turn-helix XRE-family like proteins Acear_1154 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_1156 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Acear_1156 SM00534 ATPase domain of DNA mismatch repair MUTS family Acear_1157 SM00853 MutL C terminal dimerisation domain Acear_1157 SM01340 Acear_1157 Acear_1159 SM00382 ATPases associated with a variety of cellular activities Acear_1164 SM00028 Tetratricopeptide repeats Acear_1168 SM00248 ankyrin repeats Acear_1181 SM00100 Cyclic nucleotide-monophosphate binding domain Acear_1181 SM00419 helix_turn_helix, cAMP Regulatory protein Acear_1183 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Acear_1188 SM00341 Helicase and RNase D C-terminal Acear_1188 SM00487 DEAD-like helicases superfamily Acear_1188 SM00490 helicase superfamily c-terminal domain Acear_1188 SM00956 Acear_1188 Acear_1189 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_1198 SM00421 helix_turn_helix, Lux Regulon Acear_1221 SM01018 B12 binding domain Acear_1226 SM00287 Bacterial SH3 domain homologues Acear_1228 SM00257 Lysin motif Acear_1233 SM00876 Biotin and Thiamin Synthesis associated domain Acear_1253 SM00900 Acear_1253 Acear_1259 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Acear_1259 SM00091 PAS domain Acear_1259 SM00387 Histidine kinase-like ATPases Acear_1259 SM00388 His Kinase A (phosphoacceptor) domain Acear_1265 SM00387 Histidine kinase-like ATPases Acear_1265 SM00388 His Kinase A (phosphoacceptor) domain Acear_1268 SM00257 Lysin motif Acear_1269 SM00646 Acear_1269 Acear_1272 SM01018 B12 binding domain Acear_1274 SM00318 Staphylococcal nuclease homologues Acear_1284 SM00981 Acear_1284 Acear_1287 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_1292 SM00919 Malic enzyme, NAD binding domain Acear_1292 SM01274 Acear_1292 Acear_1307 SM00327 von Willebrand factor (vWF) type A domain Acear_1308 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Acear_1308 SM00267 diguanylate cyclase Acear_1318 SM00382 ATPases associated with a variety of cellular activities Acear_1331 SM00448 cheY-homologous receiver domain Acear_1332 SM00986 Uracil DNA glycosylase superfamily Acear_1332 SM00987 UreE urease accessory protein, C-terminal domain Acear_1337 SM00478 endonuclease III Acear_1337 SM00525 Acear_1337 Acear_1346 SM00450 Rhodanese Homology Domain Acear_1347 SM00382 ATPases associated with a variety of cellular activities Acear_1366 SM00382 ATPases associated with a variety of cellular activities Acear_1372 SM00028 Tetratricopeptide repeats Acear_1372 SM00448 cheY-homologous receiver domain Acear_1373 SM00448 cheY-homologous receiver domain Acear_1374 SM00091 PAS domain Acear_1374 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_1374 SM00387 Histidine kinase-like ATPases Acear_1374 SM00388 His Kinase A (phosphoacceptor) domain Acear_1380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_1380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_1389 SM00382 ATPases associated with a variety of cellular activities Acear_1392 SM00382 ATPases associated with a variety of cellular activities Acear_1400 SM00271 DnaJ molecular chaperone homology domain Acear_1401 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_1407 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_1407 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_1407 SM01049 Acear_1407 Acear_1419 SM00487 DEAD-like helicases superfamily Acear_1419 SM00490 helicase superfamily c-terminal domain Acear_1421 SM01120 Acear_1421 Acear_1421 SM01121 Acear_1421 Acear_1425 SM00919 Malic enzyme, NAD binding domain Acear_1425 SM01274 Acear_1425 Acear_1427 SM01005 Alanine racemase, C-terminal domain Acear_1434 SM00220 Serine/Threonine protein kinases, catalytic domain Acear_1434 SM00740 Acear_1434 Acear_1435 SM00331 Sigma factor PP2C-like phosphatases Acear_1435 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Acear_1443 SM00487 DEAD-like helicases superfamily Acear_1443 SM00490 helicase superfamily c-terminal domain Acear_1445 SM00382 ATPases associated with a variety of cellular activities Acear_1450 SM01409 Acear_1450 Acear_1451 SM00072 Guanylate kinase homologues. Acear_1463 SM00562 Acear_1463 Acear_1469 SM00481 DNA polymerase alpha chain like domain Acear_1474 SM00322 K homology RNA-binding domain Acear_1474 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_1479 SM00382 ATPases associated with a variety of cellular activities Acear_1482 SM00852 Probable molybdopterin binding domain Acear_1485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_1485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_1487 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Acear_1489 SM00631 Acear_1489 Acear_1497 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_1500 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acear_1503 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_1504 SM00046 Diacylglycerol kinase catalytic domain (presumed) Acear_1517 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Acear_1519 SM00382 ATPases associated with a variety of cellular activities Acear_1523 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_1534 SM00851 MGS-like domain Acear_1534 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Acear_1534 SM01209 Acear_1534 Acear_1535 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Acear_1541 SM00382 ATPases associated with a variety of cellular activities Acear_1552 SM00859 Semialdehyde dehydrogenase, NAD binding domain Acear_1553 SM00357 Cold shock protein domain Acear_1554 SM00831 Cation transporter/ATPase, N-terminus Acear_1555 SM00487 DEAD-like helicases superfamily Acear_1555 SM00490 helicase superfamily c-terminal domain Acear_1564 SM00257 Lysin motif Acear_1565 SM00382 ATPases associated with a variety of cellular activities Acear_1565 SM00843 Acear_1565 Acear_1572 SM00876 Biotin and Thiamin Synthesis associated domain Acear_1574 SM00849 Metallo-beta-lactamase superfamily Acear_1575 SM01130 Acear_1575 Acear_1577 SM00859 Semialdehyde dehydrogenase, NAD binding domain Acear_1587 SM00646 Acear_1587 Acear_1587 SM00909 Sporulation and spore germination Acear_1588 SM00257 Lysin motif Acear_1589 SM00487 DEAD-like helicases superfamily Acear_1589 SM00488 Acear_1589 Acear_1589 SM00491 Acear_1589 Acear_1590 SM00518 AP endonuclease family 2 Acear_1591 SM00316 Ribosomal protein S1-like RNA-binding domain Acear_1591 SM00322 K homology RNA-binding domain Acear_1592 SM01387 Acear_1592 Acear_1593 SM00904 Riboflavin kinase Acear_1597 SM00322 K homology RNA-binding domain Acear_1599 SM00479 Acear_1599 Acear_1599 SM00481 DNA polymerase alpha chain like domain Acear_1603 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_1604 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acear_1623 SM00382 ATPases associated with a variety of cellular activities Acear_1623 SM00962 SRP54-type protein, GTPase domain Acear_1643 SM00382 ATPases associated with a variety of cellular activities Acear_1651 SM00382 ATPases associated with a variety of cellular activities Acear_1651 SM01086 C-terminal, D2-small domain, of ClpB protein Acear_1653 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Acear_1653 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Acear_1653 SM00493 Acear_1653 Acear_1656 SM00382 ATPases associated with a variety of cellular activities Acear_1669 SM00382 ATPases associated with a variety of cellular activities Acear_1669 SM00962 SRP54-type protein, GTPase domain Acear_1669 SM00963 SRP54-type protein, helical bundle domain Acear_1671 SM00382 ATPases associated with a variety of cellular activities Acear_1671 SM00962 SRP54-type protein, GTPase domain Acear_1671 SM00963 SRP54-type protein, helical bundle domain Acear_1673 SM00968 SMC proteins Flexible Hinge Domain Acear_1675 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_1676 SM00363 S4 RNA-binding domain Acear_1677 SM00936 Penicillin-binding protein 5, C-terminal domain Acear_1687 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_1706 SM00387 Histidine kinase-like ATPases Acear_1708 SM00936 Penicillin-binding protein 5, C-terminal domain Acear_1709 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Acear_1718 SM01018 B12 binding domain Acear_1726 SM00881 CoA binding domain Acear_1727 SM00448 cheY-homologous receiver domain Acear_1728 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acear_1732 SM00363 S4 RNA-binding domain Acear_1733 SM00861 Transketolase, pyrimidine binding domain Acear_1743 SM00878 Biotin carboxylase C-terminal domain Acear_1753 SM00841 Elongation factor P, C-terminal Acear_1753 SM01185 Acear_1753 Acear_1759 SM00965 Secretin and TonB N terminus short domain Acear_1763 SM00842 Cell division protein FtsA Acear_1773 SM00382 ATPases associated with a variety of cellular activities Acear_1774 SM00382 ATPases associated with a variety of cellular activities Acear_1782 SM00905 Dihydroneopterin aldolase Acear_1784 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_1798 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acear_1798 SM00895 Acear_1798 Acear_1803 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acear_1803 SM00895 Acear_1803 Acear_1805 SM00893 Electron transfer flavoprotein domain Acear_1806 SM00893 Electron transfer flavoprotein domain Acear_1807 SM00909 Sporulation and spore germination Acear_1808 SM00646 Acear_1808 Acear_1810 SM00387 Histidine kinase-like ATPases Acear_1811 SM00481 DNA polymerase alpha chain like domain Acear_1813 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_1813 SM00387 Histidine kinase-like ATPases Acear_1815 SM00257 Lysin motif Acear_1829 SM00938 Nitrogen regulatory protein P-II Acear_1831 SM01230 Acear_1831 Acear_1837 SM00091 PAS domain Acear_1837 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_1837 SM00382 ATPases associated with a variety of cellular activities Acear_1840 SM00882 Coenzyme A transferase Acear_1841 SM00882 Coenzyme A transferase Acear_1845 SM00257 Lysin motif Acear_1846 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_1846 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_1847 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Acear_1847 SM00091 PAS domain Acear_1847 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_1848 SM00028 Tetratricopeptide repeats Acear_1848 SM00862 Transcriptional regulatory protein, C terminal Acear_1848 SM01043 Bacterial transcriptional activator domain Acear_1875 SM00481 DNA polymerase alpha chain like domain Acear_1879 SM00838 Elongation factor G C-terminus Acear_1880 SM00481 DNA polymerase alpha chain like domain Acear_1883 SM00902 Iron hydrogenase small subunit Acear_1883 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Acear_1884 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Acear_1891 SM00357 Cold shock protein domain Acear_1892 SM00357 Cold shock protein domain Acear_1903 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_1903 SM00876 Biotin and Thiamin Synthesis associated domain Acear_1904 SM00567 E-Z type HEAT repeats Acear_1907 SM00834 Putative regulatory protein Acear_1910 SM00387 Histidine kinase-like ATPases Acear_1914 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_1914 SM00387 Histidine kinase-like ATPases Acear_1914 SM00388 His Kinase A (phosphoacceptor) domain Acear_1915 SM00448 cheY-homologous receiver domain Acear_1915 SM00862 Transcriptional regulatory protein, C terminal Acear_1917 SM00382 ATPases associated with a variety of cellular activities Acear_1921 SM00347 helix_turn_helix multiple antibiotic resistance protein Acear_1926 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acear_1926 SM00895 Acear_1926 Acear_1930 SM00793 Accessory gene regulator B Acear_1932 SM00267 diguanylate cyclase Acear_1932 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acear_1937 SM00028 Tetratricopeptide repeats Acear_1937 SM01043 Bacterial transcriptional activator domain Acear_1939 SM01221 Acear_1939 Acear_1939 SM01222 Acear_1939 Acear_1959 SM00899 Acear_1959 Acear_1974 SM01321 Acear_1974 Acear_1977 SM00422 helix_turn_helix, mercury resistance Acear_1982 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_1983 SM00357 Cold shock protein domain Acear_1996 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Acear_1996 SM00091 PAS domain Acear_1996 SM00267 diguanylate cyclase Acear_1998 SM01321 Acear_1998 Acear_2000 SM00487 DEAD-like helicases superfamily Acear_2000 SM00490 helicase superfamily c-terminal domain Acear_2001 SM00831 Cation transporter/ATPase, N-terminus Acear_2008 SM01321 Acear_2008 Acear_2009 SM00829 Enoylreductase Acear_2012 SM00155 Phospholipase D. Active site motifs. Acear_2016 SM00448 cheY-homologous receiver domain Acear_2018 SM00382 ATPases associated with a variety of cellular activities Acear_2021 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acear_2028 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acear_2031 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acear_2034 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acear_2037 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_2050 SM00450 Rhodanese Homology Domain Acear_2051 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acear_2053 SM01329 Acear_2053 Acear_2054 SM00845 GatB domain Acear_2057 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acear_2057 SM00292 breast cancer carboxy-terminal domain Acear_2057 SM00532 Ligase N family Acear_2067 SM00382 ATPases associated with a variety of cellular activities Acear_2067 SM00930 Acear_2067 Acear_2070 SM00852 Probable molybdopterin binding domain Acear_2072 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_2073 SM00852 Probable molybdopterin binding domain Acear_2074 SM00852 Probable molybdopterin binding domain Acear_2078 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_2078 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_2078 SM01049 Acear_2078 Acear_2084 SM00883 Chaperonin 10 Kd subunit Acear_2087 SM00729 Elongator protein 3, MiaB family, Radical SAM Acear_2093 SM00028 Tetratricopeptide repeats Acear_2100 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_2103 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acear_2103 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acear_2110 SM00530 Helix-turn-helix XRE-family like proteins Acear_2130 SM00984 UDP binding domain Acear_2158 SM00984 UDP binding domain Acear_2175 SM00732 Likely ribonuclease with RNase H fold. Acear_2178 SM00382 ATPases associated with a variety of cellular activities Acear_2183 SM00116 Domain in cystathionine beta-synthase and other proteins. Acear_2188 SM00382 ATPases associated with a variety of cellular activities Acear_2194 SM00382 ATPases associated with a variety of cellular activities Acear_2198 SM00935 Outer membrane protein (OmpH-like) Acear_2200 SM00935 Outer membrane protein (OmpH-like) Acear_2216 SM00382 ATPases associated with a variety of cellular activities Acear_2232 SM00226 Low molecular weight phosphatase family Acear_2235 SM00937 Acear_2235 Acear_2238 SM00357 Cold shock protein domain Acear_2238 SM00382 ATPases associated with a variety of cellular activities Acear_2238 SM00959 Rho termination factor, N-terminal domain Acear_2243 SM00836 DALR anticodon binding domain Acear_2243 SM01016 Arginyl tRNA synthetase N terminal dom Acear_2250 SM01230 Acear_2250 Acear_2253 SM00342 helix_turn_helix, arabinose operon control protein Acear_2253 SM00448 cheY-homologous receiver domain Acear_2254 SM00387 Histidine kinase-like ATPases Acear_2257 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acear_2258 SM00849 Metallo-beta-lactamase superfamily Acear_2259 SM00138 Methyltransferase, chemotaxis proteins Acear_2287 SM00382 ATPases associated with a variety of cellular activities Acear_2289 SM00062 Bacterial periplasmic substrate-binding proteins Acear_2290 SM00450 Rhodanese Homology Domain Acear_2291 SM01078 Acear_2291 Acear_2300 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Acear_2301 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Acear_2305 SM00881 CoA binding domain Acear_2310 SM00798 AICARFT/IMPCHase bienzyme Acear_2310 SM00851 MGS-like domain Acear_2315 SM01211 Acear_2315 Acear_2318 SM00998 Adenylosuccinate lyase C-terminus Acear_2320 SM01001 AIR carboxylase Acear_2322 SM01209 Acear_2322 Acear_2322 SM01210 Acear_2322 Acear_2323 SM00788 Adenylosuccinate synthetase Acear_2324 SM00998 Adenylosuccinate lyase C-terminus Acear_2342 SM00470 ParB-like nuclease domain Acear_2344 SM00470 ParB-like nuclease domain Acear_2347 SM01228 Acear_2347 Acear_2348 SM01228 Acear_2348 Acear_2350 SM00393 Putative single-stranded nucleic acids-binding domain Acear_2350 SM01245 Acear_2350 Acear_2352 SM01234 Acear_2352