ACL_0001 PF00308 Bacterial dnaA protein ACL_0001 PF08299 Bacterial dnaA protein helix-turn-helix ACL_0001 PF11638 DnaA N-terminal domain ACL_0003 PF01609 Transposase DDE domain ACL_0004 PF13275 S4 domain ACL_0005 PF02463 RecF/RecN/SMC N terminal domain ACL_0006 PF00204 DNA gyrase B ACL_0006 PF00986 DNA gyrase B subunit, carboxyl terminus ACL_0006 PF01751 Toprim domain ACL_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A ACL_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller ACL_0008 PF00005 ABC transporter ACL_0008 PF02687 ACL_0008 ACL_0009 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACL_0009 PF02403 Seryl-tRNA synthetase N-terminal domain ACL_0010 PF00072 Response regulator receiver domain ACL_0010 PF00486 Transcriptional regulatory protein, C terminal ACL_0011 PF00512 His Kinase A (phospho-acceptor) domain ACL_0011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_0012 PF01230 HIT domain ACL_0013 PF06130 ACL_0013 ACL_0014 PF01966 HD domain ACL_0015 PF13155 Toprim-like ACL_0015 PF13331 ACL_0015 ACL_0016 PF00398 Ribosomal RNA adenine dimethylase ACL_0017 PF04026 SpoVG ACL_0018 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACL_0018 PF14572 Phosphoribosyl synthetase-associated domain ACL_0019 PF01195 Peptidyl-tRNA hydrolase ACL_0020 PF00270 DEAD/DEAH box helicase ACL_0020 PF00271 Helicase conserved C-terminal domain ACL_0020 PF02559 CarD-like/TRCF domain ACL_0020 PF03461 TRCF domain ACL_0021 PF01996 F420-0:Gamma-glutamyl ligase ACL_0022 PF00155 Aminotransferase class I and II ACL_0023 PF00132 Bacterial transferase hexapeptide (six repeats) ACL_0023 PF12464 Maltose acetyltransferase ACL_0023 PF14602 Hexapeptide repeat of succinyl-transferase ACL_0025 PF13091 PLD-like domain ACL_0025 PF13396 ACL_0025 ACL_0027 PF13671 AAA domain ACL_0028 PF01228 Glycine radical ACL_0028 PF02901 Pyruvate formate lyase ACL_0029 PF04055 Radical SAM superfamily ACL_0029 PF13353 4Fe-4S single cluster domain ACL_0030 PF00027 Cyclic nucleotide-binding domain ACL_0030 PF13545 Crp-like helix-turn-helix domain ACL_0031 PF03883 ACL_0031 ACL_0032 PF01268 Formate--tetrahydrofolate ligase ACL_0033 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACL_0033 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACL_0035 PF00356 Bacterial regulatory proteins, lacI family ACL_0035 PF13377 Periplasmic binding protein-like domain ACL_0037 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0038 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0039 PF06165 Glycosyltransferase family 36 ACL_0039 PF17167 ACL_0039 ACL_0040 PF02566 OsmC-like protein ACL_0041 PF01510 N-acetylmuramoyl-L-alanine amidase ACL_0041 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_0042 PF01510 N-acetylmuramoyl-L-alanine amidase ACL_0042 PF02368 Bacterial Ig-like domain (group 2) ACL_0042 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_0043 PF00719 Inorganic pyrophosphatase ACL_0044 PF01709 Transcriptional regulator ACL_0045 PF01381 Helix-turn-helix ACL_0047 PF00464 Serine hydroxymethyltransferase ACL_0048 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACL_0048 PF10531 SLBB domain ACL_0048 PF13237 4Fe-4S dicluster domain ACL_0048 PF13375 RnfC Barrel sandwich hybrid domain ACL_0049 PF03116 ACL_0049 ACL_0052 PF02508 ACL_0052 ACL_0054 PF02424 ApbE family ACL_0055 PF07009 Protein of unknown function (DUF1312) ACL_0056 PF07456 ACL_0056 ACL_0057 PF01197 Ribosomal protein L31 ACL_0058 PF00265 Thymidine kinase ACL_0059 PF14437 ACL_0059 ACL_0062 PF00456 Transketolase, thiamine diphosphate binding domain ACL_0062 PF02779 Transketolase, pyrimidine binding domain ACL_0063 PF01134 Glucose inhibited division protein A ACL_0063 PF13932 GidA associated domain 3 ACL_0064 PF02527 rRNA small subunit methyltransferase G ACL_0065 PF06107 ACL_0065 ACL_0081 PF03733 ACL_0081 ACL_0082 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACL_0082 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACL_0083 PF02645 Uncharacterised protein, DegV family COG1307 ACL_0084 PF01047 MarR family ACL_0086 PF00338 Ribosomal protein S10p/S20e ACL_0087 PF00297 Ribosomal protein L3 ACL_0088 PF00573 Ribosomal protein L4/L1 family ACL_0089 PF00276 Ribosomal protein L23 ACL_0090 PF00181 Ribosomal Proteins L2, RNA binding domain ACL_0090 PF03947 Ribosomal Proteins L2, C-terminal domain ACL_0091 PF00203 Ribosomal protein S19 ACL_0092 PF00237 Ribosomal protein L22p/L17e ACL_0093 PF00189 Ribosomal protein S3, C-terminal domain ACL_0093 PF07650 KH domain ACL_0094 PF00252 Ribosomal protein L16p/L10e ACL_0095 PF00831 Ribosomal L29 protein ACL_0096 PF00366 Ribosomal protein S17 ACL_0097 PF00238 Ribosomal protein L14p/L23e ACL_0098 PF17136 ACL_0098 ACL_0099 PF00281 Ribosomal protein L5 ACL_0099 PF00673 ribosomal L5P family C-terminus ACL_0100 PF00253 Ribosomal protein S14p/S29e ACL_0101 PF00410 Ribosomal protein S8 ACL_0102 PF00347 Ribosomal protein L6 ACL_0103 PF00861 Ribosomal L18p/L5e family ACL_0104 PF00333 Ribosomal protein S5, N-terminal domain ACL_0104 PF03719 Ribosomal protein S5, C-terminal domain ACL_0105 PF00327 Ribosomal protein L30p/L7e ACL_0106 PF00828 Ribosomal protein L18e/L15 ACL_0107 PF00344 SecY translocase ACL_0108 PF00406 Adenylate kinase ACL_0108 PF05191 Adenylate kinase, active site lid ACL_0109 PF00557 Metallopeptidase family M24 ACL_0110 PF01176 Translation initiation factor 1A / IF-1 ACL_0111 PF00444 Ribosomal protein L36 ACL_0112 PF00416 Ribosomal protein S13/S18 ACL_0113 PF00411 Ribosomal protein S11 ACL_0114 PF01000 RNA polymerase Rpb3/RpoA insert domain ACL_0114 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACL_0114 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACL_0115 PF01196 Ribosomal protein L17 ACL_0117 PF04231 Endonuclease I ACL_0117 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_0118 PF03352 Methyladenine glycosylase ACL_0119 PF01432 Peptidase family M3 ACL_0120 PF08818 Domain of unknown function (DU1801) ACL_0121 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_0122 PF00085 Thioredoxin ACL_0123 PF00005 ABC transporter ACL_0124 PF00005 ABC transporter ACL_0125 PF02361 Cobalt transport protein ACL_0126 PF01416 tRNA pseudouridine synthase ACL_0127 PF02223 Thymidylate kinase ACL_0128 PF13177 DNA polymerase III, delta subunit ACL_0129 PF05175 Methyltransferase small domain ACL_0130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACL_0132 PF08264 Anticodon-binding domain of tRNA ACL_0132 PF09334 tRNA synthetases class I (M) ACL_0133 PF02588 ACL_0133 ACL_0133 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACL_0134 PF01906 Putative heavy-metal-binding ACL_0135 PF02556 Preprotein translocase subunit SecB ACL_0136 PF00990 GGDEF domain ACL_0136 PF13426 PAS domain ACL_0137 PF00572 Ribosomal protein L13 ACL_0138 PF00380 Ribosomal protein S9/S16 ACL_0139 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACL_0141 PF02040 ACL_0141 ACL_0142 PF11074 ACL_0142 ACL_0143 PF01406 tRNA synthetases class I (C) catalytic domain ACL_0144 PF00636 Ribonuclease III domain ACL_0145 PF00122 E1-E2 ATPase ACL_0145 PF00702 haloacid dehalogenase-like hydrolase ACL_0146 PF00588 SpoU rRNA Methylase family ACL_0146 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACL_0147 PF04542 Sigma-70 region 2 ACL_0149 PF00471 Ribosomal protein L33 ACL_0150 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ACL_0151 PF00467 KOW motif ACL_0151 PF02357 Transcription termination factor nusG ACL_0154 PF04231 Endonuclease I ACL_0155 PF04231 Endonuclease I ACL_0157 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ACL_0159 PF00932 Lamin Tail Domain ACL_0159 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_0160 PF04231 Endonuclease I ACL_0163 PF01145 SPFH domain / Band 7 family ACL_0164 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACL_0165 PF11667 ACL_0165 ACL_0166 PF00298 Ribosomal protein L11, RNA binding domain ACL_0166 PF03946 Ribosomal protein L11, N-terminal domain ACL_0167 PF00687 Ribosomal protein L1p/L10e family ACL_0168 PF00466 Ribosomal protein L10 ACL_0169 PF00542 Ribosomal protein L7/L12 C-terminal domain ACL_0169 PF16320 ACL_0169 ACL_0170 PF05175 Methyltransferase small domain ACL_0171 PF00562 RNA polymerase Rpb2, domain 6 ACL_0171 PF04560 RNA polymerase Rpb2, domain 7 ACL_0171 PF04561 RNA polymerase Rpb2, domain 2 ACL_0171 PF04563 RNA polymerase beta subunit ACL_0171 PF04565 RNA polymerase Rpb2, domain 3 ACL_0171 PF10385 RNA polymerase beta subunit external 1 domain ACL_0172 PF00623 RNA polymerase Rpb1, domain 2 ACL_0172 PF04983 RNA polymerase Rpb1, domain 3 ACL_0172 PF04997 RNA polymerase Rpb1, domain 1 ACL_0172 PF04998 RNA polymerase Rpb1, domain 5 ACL_0172 PF05000 RNA polymerase Rpb1, domain 4 ACL_0173 PF14542 GCN5-related N-acetyl-transferase ACL_0174 PF00990 GGDEF domain ACL_0177 PF00171 Aldehyde dehydrogenase family ACL_0177 PF00465 Iron-containing alcohol dehydrogenase ACL_0179 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_0181 PF02638 ACL_0181 ACL_0183 PF02638 ACL_0183 ACL_0185 PF00164 Ribosomal protein S12/S23 ACL_0186 PF00177 Ribosomal protein S7p/S5e ACL_0187 PF00009 Elongation factor Tu GTP binding domain ACL_0187 PF00679 Elongation factor G C-terminus ACL_0187 PF03144 Elongation factor Tu domain 2 ACL_0187 PF03764 Elongation factor G, domain IV ACL_0187 PF14492 Elongation Factor G, domain II ACL_0188 PF00009 Elongation factor Tu GTP binding domain ACL_0188 PF03143 Elongation factor Tu C-terminal domain ACL_0188 PF03144 Elongation factor Tu domain 2 ACL_0189 PF01026 TatD related DNase ACL_0191 PF13180 PDZ domain ACL_0191 PF13365 Trypsin-like peptidase domain ACL_0192 PF02464 Competence-damaged protein ACL_0193 PF01250 Ribosomal protein S6 ACL_0194 PF00436 Single-strand binding protein family ACL_0195 PF01084 Ribosomal protein S18 ACL_0196 PF01281 Ribosomal protein L9, N-terminal domain ACL_0196 PF01368 DHH family ACL_0196 PF03948 Ribosomal protein L9, C-terminal domain ACL_0197 PF00772 DnaB-like helicase N terminal domain ACL_0197 PF03796 DnaB-like helicase C terminal domain ACL_0198 PF00210 Ferritin-like domain ACL_0199 PF02417 ACL_0199 ACL_0200 PF02417 ACL_0200 ACL_0201 PF00472 RF-1 domain ACL_0201 PF03462 PCRF domain ACL_0202 PF05175 Methyltransferase small domain ACL_0203 PF01300 Telomere recombination ACL_0204 PF00009 Elongation factor Tu GTP binding domain ACL_0204 PF00679 Elongation factor G C-terminus ACL_0204 PF03144 Elongation factor Tu domain 2 ACL_0204 PF14492 Elongation Factor G, domain II ACL_0205 PF02502 Ribose/Galactose Isomerase ACL_0206 PF14681 Uracil phosphoribosyltransferase ACL_0207 PF01205 Uncharacterized protein family UPF0029 ACL_0208 PF01743 Poly A polymerase head domain ACL_0208 PF12627 Probable RNA and SrmB- binding site of polymerase A ACL_0208 PF13735 tRNA nucleotidyltransferase domain 2 putative ACL_0209 PF01966 HD domain ACL_0211 PF12706 Beta-lactamase superfamily domain ACL_0212 PF02590 Predicted SPOUT methyltransferase ACL_0213 PF01741 Large-conductance mechanosensitive channel, MscL ACL_0214 PF02645 Uncharacterised protein, DegV family COG1307 ACL_0215 PF00793 DAHP synthetase I family ACL_0216 PF02153 Prephenate dehydrogenase ACL_0217 PF01761 3-dehydroquinate synthase ACL_0218 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACL_0219 PF01817 Chorismate mutase type II ACL_0220 PF08501 Shikimate dehydrogenase substrate binding domain ACL_0221 PF01264 Chorismate synthase ACL_0222 PF06081 ACL_0222 ACL_0222 PF11728 DUF939 C-terminal domain ACL_0223 PF00368 Hydroxymethylglutaryl-coenzyme A reductase ACL_0224 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACL_0224 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACL_0226 PF00270 DEAD/DEAH box helicase ACL_0226 PF00271 Helicase conserved C-terminal domain ACL_0226 PF17191 ACL_0226 ACL_0227 PF02504 Fatty acid synthesis protein ACL_0228 PF00035 Double-stranded RNA binding motif ACL_0228 PF14622 Ribonuclease-III-like ACL_0230 PF00633 Helix-hairpin-helix motif ACL_0230 PF00730 HhH-GPD superfamily base excision DNA repair protein ACL_0231 PF01381 Helix-turn-helix ACL_0232 PF00005 ABC transporter ACL_0232 PF00664 ABC transporter transmembrane region ACL_0233 PF00005 ABC transporter ACL_0233 PF00664 ABC transporter transmembrane region ACL_0235 PF00258 Flavodoxin ACL_0236 PF02811 PHP domain ACL_0236 PF07733 Bacterial DNA polymerase III alpha subunit ACL_0236 PF14579 Helix-hairpin-helix motif ACL_0237 PF02073 Thermophilic metalloprotease (M29) ACL_0238 PF03358 NADPH-dependent FMN reductase ACL_0240 PF10282 Lactonase, 7-bladed beta-propeller ACL_0241 PF00550 Phosphopantetheine attachment site ACL_0242 PF08264 Anticodon-binding domain of tRNA ACL_0242 PF09334 tRNA synthetases class I (M) ACL_0242 PF13603 Leucyl-tRNA synthetase, Domain 2 ACL_0243 PF00300 Histidine phosphatase superfamily (branch 1) ACL_0244 PF06962 Putative rRNA methylase ACL_0245 PF04055 Radical SAM superfamily ACL_0245 PF16199 ACL_0245 ACL_0247 PF00929 Exonuclease ACL_0247 PF02811 PHP domain ACL_0247 PF07733 Bacterial DNA polymerase III alpha subunit ACL_0247 PF14579 Helix-hairpin-helix motif ACL_0248 PF12811 ACL_0248 ACL_0249 PF01409 tRNA synthetases class II core domain (F) ACL_0249 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACL_0250 PF01588 Putative tRNA binding domain ACL_0250 PF03147 Ferredoxin-fold anticodon binding domain ACL_0250 PF03483 B3/4 domain ACL_0250 PF03484 tRNA synthetase B5 domain ACL_0251 PF04055 Radical SAM superfamily ACL_0251 PF13394 4Fe-4S single cluster domain ACL_0252 PF03193 Protein of unknown function, DUF258 ACL_0253 PF00834 Ribulose-phosphate 3 epimerase family ACL_0254 PF04263 Thiamin pyrophosphokinase, catalytic domain ACL_0254 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain ACL_0255 PF00830 Ribosomal L28 family ACL_0256 PF02734 DAK2 domain ACL_0256 PF13684 Dihydroxyacetone kinase family ACL_0259 PF09903 ACL_0259 ACL_0261 PF09992 Predicted periplasmic protein (DUF2233) ACL_0262 PF01380 SIS domain ACL_0262 PF01418 Helix-turn-helix domain, rpiR family ACL_0263 PF03702 Uncharacterised protein family (UPF0075) ACL_0264 PF02056 Family 4 glycosyl hydrolase ACL_0264 PF11975 Family 4 glycosyl hydrolase C-terminal domain ACL_0265 PF02638 ACL_0265 ACL_0266 PF02638 ACL_0266 ACL_0267 PF00144 Beta-lactamase ACL_0268 PF01510 N-acetylmuramoyl-L-alanine amidase ACL_0268 PF02368 Bacterial Ig-like domain (group 2) ACL_0270 PF13416 Bacterial extracellular solute-binding protein ACL_0270 PF16403 ACL_0270 ACL_0271 PF13416 Bacterial extracellular solute-binding protein ACL_0272 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0273 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0277 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0278 PF04854 ACL_0278 ACL_0279 PF07075 Protein of unknown function (DUF1343) ACL_0280 PF00933 Glycosyl hydrolase family 3 N terminal domain ACL_0281 PF01869 BadF/BadG/BcrA/BcrD ATPase family ACL_0282 PF13580 SIS domain ACL_0283 PF00583 Acetyltransferase (GNAT) family ACL_0284 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ACL_0286 PF02585 GlcNAc-PI de-N-acetylase ACL_0287 PF04167 Protein of unknown function (DUF402) ACL_0288 PF04608 Phosphatidylglycerophosphatase A ACL_0289 PF02146 Sir2 family ACL_0291 PF02163 Peptidase family M50 ACL_0292 PF08241 Methyltransferase domain ACL_0293 PF00313 'Cold-shock' DNA-binding domain ACL_0295 PF13509 S1 domain ACL_0296 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACL_0296 PF03129 Anticodon binding domain ACL_0296 PF09180 Prolyl-tRNA synthetase, C-terminal ACL_0297 PF00756 Putative esterase ACL_0298 PF00009 Elongation factor Tu GTP binding domain ACL_0298 PF00679 Elongation factor G C-terminus ACL_0298 PF03144 Elongation factor Tu domain 2 ACL_0298 PF03764 Elongation factor G, domain IV ACL_0298 PF14492 Elongation Factor G, domain II ACL_0300 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACL_0300 PF16321 ACL_0300 ACL_0302 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACL_0302 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACL_0303 PF05670 ACL_0303 ACL_0303 PF05833 Fibronectin-binding protein A N-terminus (FbpA) ACL_0304 PF00625 Guanylate kinase ACL_0305 PF01192 RNA polymerase Rpb6 ACL_0306 PF01541 GIY-YIG catalytic domain ACL_0306 PF02151 UvrB/uvrC motif ACL_0306 PF08459 UvrC Helix-hairpin-helix N-terminal ACL_0306 PF14520 Helix-hairpin-helix domain ACL_0308 PF07690 Major Facilitator Superfamily ACL_0309 PF00753 Metallo-beta-lactamase superfamily ACL_0309 PF07521 RNA-metabolising metallo-beta-lactamase ACL_0310 PF08282 haloacid dehalogenase-like hydrolase ACL_0311 PF01263 Aldose 1-epimerase ACL_0312 PF01244 Membrane dipeptidase (Peptidase family M19) ACL_0314 PF07722 Peptidase C26 ACL_0315 PF01467 Cytidylyltransferase ACL_0317 PF08529 NusA N-terminal domain ACL_0317 PF13184 NusA-like KH domain ACL_0318 PF04296 Protein of unknown function (DUF448) ACL_0319 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family ACL_0320 PF00009 Elongation factor Tu GTP binding domain ACL_0320 PF04760 Translation initiation factor IF-2, N-terminal region ACL_0320 PF11987 Translation-initiation factor 2 ACL_0321 PF02033 Ribosome-binding factor A ACL_0322 PF09826 ACL_0322 ACL_0323 PF04397 LytTr DNA-binding domain ACL_0325 PF00551 Formyl transferase ACL_0325 PF02911 Formyl transferase, C-terminal domain ACL_0326 PF04608 Phosphatidylglycerophosphatase A ACL_0328 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACL_0328 PF02772 S-adenosylmethionine synthetase, central domain ACL_0328 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACL_0329 PF04011 LemA family ACL_0330 PF01043 SecA preprotein cross-linking domain ACL_0330 PF07516 SecA Wing and Scaffold domain ACL_0330 PF07517 SecA DEAD-like domain ACL_0331 PF00472 RF-1 domain ACL_0331 PF03462 PCRF domain ACL_0332 PF02588 ACL_0332 ACL_0332 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACL_0333 PF02631 RecX family ACL_0334 PF08282 haloacid dehalogenase-like hydrolase ACL_0336 PF01580 FtsK/SpoIIIE family ACL_0336 PF09397 Ftsk gamma domain ACL_0337 PF01926 50S ribosome-binding GTPase ACL_0338 PF01351 Ribonuclease HII ACL_0339 PF01131 DNA topoisomerase ACL_0339 PF01396 ACL_0339 ACL_0339 PF01751 Toprim domain ACL_0340 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_0341 PF00005 ABC transporter ACL_0343 PF00005 ABC transporter ACL_0343 PF02687 ACL_0343 ACL_0344 PF01136 ACL_0344 ACL_0345 PF01136 ACL_0345 ACL_0345 PF16325 ACL_0345 ACL_0346 PF00578 AhpC/TSA family ACL_0347 PF00448 SRP54-type protein, GTPase domain ACL_0347 PF02881 SRP54-type protein, helical bundle domain ACL_0348 PF04297 Putative helix-turn-helix protein, YlxM / p13 like ACL_0349 PF00448 SRP54-type protein, GTPase domain ACL_0349 PF02881 SRP54-type protein, helical bundle domain ACL_0349 PF02978 Signal peptide binding domain ACL_0350 PF00476 DNA polymerase family A ACL_0350 PF01367 5'-3' exonuclease, C-terminal SAM fold ACL_0350 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACL_0351 PF01121 Dephospho-CoA kinase ACL_0351 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACL_0351 PF06827 Zinc finger found in FPG and IleRS ACL_0351 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACL_0352 PF07261 Replication initiation and membrane attachment ACL_0353 PF01695 IstB-like ATP binding protein ACL_0354 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACL_0354 PF02824 TGS domain ACL_0354 PF03129 Anticodon binding domain ACL_0354 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACL_0355 PF00005 ABC transporter ACL_0355 PF13732 ACL_0355 ACL_0356 PF12698 ABC-2 family transporter protein ACL_0357 PF10609 ParA/MinD ATPase like ACL_0360 PF04002 RadC-like JAB domain ACL_0361 PF05128 ACL_0361 ACL_0362 PF00829 Ribosomal prokaryotic L21 protein ACL_0363 PF04327 Protein of unknown function (DUF464) ACL_0364 PF01016 Ribosomal L27 protein ACL_0365 PF01018 GTP1/OBG ACL_0365 PF01926 50S ribosome-binding GTPase ACL_0365 PF09269 Domain of unknown function (DUF1967) ACL_0369 PF01330 RuvA N terminal domain ACL_0369 PF07499 RuvA, C-terminal domain ACL_0369 PF14520 Helix-hairpin-helix domain ACL_0370 PF05491 Holliday junction DNA helicase ruvB C-terminus ACL_0370 PF05496 Holliday junction DNA helicase ruvB N-terminus ACL_0371 PF02547 Queuosine biosynthesis protein ACL_0372 PF02673 ACL_0372 ACL_0374 PF00381 PTS HPr component phosphorylation site ACL_0375 PF04018 ACL_0375 ACL_0376 PF02390 Putative methyltransferase ACL_0377 PF05343 M42 glutamyl aminopeptidase ACL_0378 PF00248 Aldo/keto reductase family ACL_0379 PF00204 DNA gyrase B ACL_0379 PF00986 DNA gyrase B subunit, carboxyl terminus ACL_0379 PF01751 Toprim domain ACL_0379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_0380 PF00521 DNA gyrase/topoisomerase IV, subunit A ACL_0380 PF03989 DNA gyrase C-terminal domain, beta-propeller ACL_0381 PF00485 Phosphoribulokinase / Uridine kinase family ACL_0383 PF02645 Uncharacterised protein, DegV family COG1307 ACL_0387 PF02608 Basic membrane protein ACL_0389 PF02653 ACL_0389 ACL_0390 PF02653 ACL_0390 ACL_0391 PF01712 Deoxynucleoside kinase ACL_0392 PF04542 Sigma-70 region 2 ACL_0392 PF04545 Sigma-70, region 4 ACL_0395 PF02347 Glycine cleavage system P-protein ACL_0396 PF02347 Glycine cleavage system P-protein ACL_0397 PF01597 Glycine cleavage H-protein ACL_0398 PF01571 Aminomethyltransferase folate-binding domain ACL_0398 PF08669 Glycine cleavage T-protein C-terminal barrel domain ACL_0399 PF00149 Calcineurin-like phosphoesterase ACL_0400 PF01676 Metalloenzyme superfamily ACL_0400 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACL_0401 PF12822 Protein of unknown function (DUF3816) ACL_0402 PF00113 Enolase, C-terminal TIM barrel domain ACL_0402 PF03952 Enolase, N-terminal domain ACL_0403 PF02142 MGS-like domain ACL_0405 PF00575 S1 RNA binding domain ACL_0405 PF00773 RNB domain ACL_0406 PF01668 SmpB protein ACL_0407 PF01734 Patatin-like phospholipase ACL_0408 PF01569 PAP2 superfamily ACL_0409 PF13673 Acetyltransferase (GNAT) domain ACL_0411 PF00570 HRDC domain ACL_0411 PF04471 Restriction endonuclease ACL_0412 PF14119 ACL_0412 ACL_0413 PF00294 pfkB family carbohydrate kinase ACL_0414 PF00817 impB/mucB/samB family ACL_0414 PF11798 IMS family HHH motif ACL_0414 PF11799 impB/mucB/samB family C-terminal domain ACL_0415 PF08863 ACL_0415 ACL_0416 PF01047 MarR family ACL_0417 PF00005 ABC transporter ACL_0417 PF00664 ABC transporter transmembrane region ACL_0418 PF00005 ABC transporter ACL_0418 PF00664 ABC transporter transmembrane region ACL_0419 PF09335 ACL_0419 ACL_0420 PF07055 Enoyl reductase FAD binding domain ACL_0420 PF12241 Trans-2-enoyl-CoA reductase catalytic region ACL_0420 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ACL_0421 PF00011 Hsp20/alpha crystallin family ACL_0422 PF01565 FAD binding domain ACL_0422 PF02913 FAD linked oxidases, C-terminal domain ACL_0423 PF03831 PhnA protein ACL_0425 PF04542 Sigma-70 region 2 ACL_0425 PF08281 Sigma-70, region 4 ACL_0428 PF00122 E1-E2 ATPase ACL_0428 PF00702 haloacid dehalogenase-like hydrolase ACL_0429 PF00403 Heavy-metal-associated domain ACL_0430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACL_0432 PF00270 DEAD/DEAH box helicase ACL_0432 PF00271 Helicase conserved C-terminal domain ACL_0432 PF03880 DbpA RNA binding domain ACL_0434 PF13835 ACL_0434 ACL_0435 PF13555 P-loop containing region of AAA domain ACL_0435 PF13558 Putative exonuclease SbcCD, C subunit ACL_0436 PF00391 PEP-utilising enzyme, mobile domain ACL_0436 PF02896 PEP-utilising enzyme, TIM barrel domain ACL_0436 PF05524 PEP-utilising enzyme, N-terminal ACL_0438 PF02661 Fic/DOC family ACL_0439 PF16804 ACL_0439 ACL_0440 PF05958 tRNA (Uracil-5-)-methyltransferase ACL_0444 PF00654 Voltage gated chloride channel ACL_0445 PF01381 Helix-turn-helix ACL_0446 PF00583 Acetyltransferase (GNAT) family ACL_0447 PF00990 GGDEF domain ACL_0448 PF00128 Alpha amylase, catalytic domain ACL_0448 PF16657 ACL_0448 ACL_0449 PF00092 von Willebrand factor type A domain ACL_0449 PF12034 ACL_0449 ACL_0449 PF12450 ACL_0449 ACL_0451 PF00990 GGDEF domain ACL_0452 PF00122 E1-E2 ATPase ACL_0452 PF00702 haloacid dehalogenase-like hydrolase ACL_0457 PF00364 Biotin-requiring enzyme ACL_0458 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain ACL_0458 PF02785 Biotin carboxylase C-terminal domain ACL_0458 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACL_0459 PF01039 Carboxyl transferase domain ACL_0460 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACL_0461 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACL_0461 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACL_0462 PF00698 Acyl transferase domain ACL_0463 PF13561 Enoyl-(Acyl carrier protein) reductase ACL_0464 PF00109 Beta-ketoacyl synthase, N-terminal domain ACL_0464 PF02801 Beta-ketoacyl synthase, C-terminal domain ACL_0465 PF07977 FabA-like domain ACL_0466 PF02632 BioY family ACL_0466 PF03099 Biotin/lipoate A/B protein ligase family ACL_0467 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_0468 PF03551 Transcriptional regulator PadR-like family ACL_0471 PF00005 ABC transporter ACL_0471 PF08402 TOBE domain ACL_0472 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0473 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0474 PF13416 Bacterial extracellular solute-binding protein ACL_0475 PF01029 NusB family ACL_0476 PF02601 ACL_0476 ACL_0476 PF13742 ACL_0476 ACL_0477 PF02609 Exonuclease VII small subunit ACL_0478 PF01479 S4 domain ACL_0478 PF01728 FtsJ-like methyltransferase ACL_0479 PF02463 RecF/RecN/SMC N terminal domain ACL_0480 PF00817 impB/mucB/samB family ACL_0480 PF11799 impB/mucB/samB family C-terminal domain ACL_0481 PF00270 DEAD/DEAH box helicase ACL_0481 PF00271 Helicase conserved C-terminal domain ACL_0482 PF01261 Xylose isomerase-like TIM barrel ACL_0484 PF02583 Metal-sensitive transcriptional repressor ACL_0485 PF00750 tRNA synthetases class I (R) ACL_0485 PF05746 DALR anticodon binding domain ACL_0486 PF03706 ACL_0486 ACL_0487 PF00534 Glycosyl transferases group 1 ACL_0487 PF13439 Glycosyltransferase Family 4 ACL_0490 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACL_0491 PF13303 ACL_0491 ACL_0492 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ACL_0493 PF01554 MatE ACL_0494 PF00588 SpoU rRNA Methylase family ACL_0495 PF03006 ACL_0495 ACL_0496 PF00871 Acetokinase family ACL_0497 PF02653 ACL_0497 ACL_0498 PF02653 ACL_0498 ACL_0499 PF00005 ABC transporter ACL_0499 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACL_0500 PF00005 ABC transporter ACL_0501 PF07523 Bacterial Ig-like domain (group 3) ACL_0501 PF13458 Periplasmic binding protein ACL_0502 PF00440 Bacterial regulatory proteins, tetR family ACL_0503 PF00108 Thiolase, N-terminal domain ACL_0503 PF02803 Thiolase, C-terminal domain ACL_0504 PF13561 Enoyl-(Acyl carrier protein) reductase ACL_0505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACL_0505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACL_0506 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ACL_0506 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ACL_0507 PF12697 Alpha/beta hydrolase family ACL_0508 PF00561 alpha/beta hydrolase fold ACL_0509 PF01938 TRAM domain ACL_0509 PF05958 tRNA (Uracil-5-)-methyltransferase ACL_0510 PF14478 Domain of unknown function (DUF4430) ACL_0512 PF00270 DEAD/DEAH box helicase ACL_0512 PF00271 Helicase conserved C-terminal domain ACL_0513 PF05958 tRNA (Uracil-5-)-methyltransferase ACL_0517 PF07690 Major Facilitator Superfamily ACL_0518 PF00534 Glycosyl transferases group 1 ACL_0518 PF08323 Starch synthase catalytic domain ACL_0519 PF00483 Nucleotidyl transferase ACL_0520 PF01510 N-acetylmuramoyl-L-alanine amidase ACL_0520 PF02368 Bacterial Ig-like domain (group 2) ACL_0522 PF00570 HRDC domain ACL_0522 PF13086 AAA domain ACL_0522 PF13087 AAA domain ACL_0522 PF13195 ACL_0522 ACL_0523 PF06961 ACL_0523 ACL_0524 PF09954 ACL_0524 ACL_0525 PF02586 Uncharacterised ACR, COG2135 ACL_0527 PF00296 Luciferase-like monooxygenase ACL_0528 PF00343 Carbohydrate phosphorylase ACL_0529 PF00128 Alpha amylase, catalytic domain ACL_0529 PF02806 Alpha amylase, C-terminal all-beta domain ACL_0529 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACL_0530 PF00356 Bacterial regulatory proteins, lacI family ACL_0530 PF13377 Periplasmic binding protein-like domain ACL_0531 PF00128 Alpha amylase, catalytic domain ACL_0531 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACL_0532 PF00480 ROK family ACL_0533 PF00534 Glycosyl transferases group 1 ACL_0533 PF13439 Glycosyltransferase Family 4 ACL_0534 PF00248 Aldo/keto reductase family ACL_0535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACL_0535 PF05697 Bacterial trigger factor protein (TF) ACL_0535 PF05698 Bacterial trigger factor protein (TF) C-terminus ACL_0536 PF00004 ATPase family associated with various cellular activities (AAA) ACL_0536 PF02190 ATP-dependent protease La (LON) domain ACL_0536 PF05362 Lon protease (S16) C-terminal proteolytic domain ACL_0537 PF01926 50S ribosome-binding GTPase ACL_0538 PF02645 Uncharacterised protein, DegV family COG1307 ACL_0539 PF13460 NADH(P)-binding ACL_0540 PF13302 Acetyltransferase (GNAT) domain ACL_0541 PF00133 tRNA synthetases class I (I, L, M and V) ACL_0541 PF08264 Anticodon-binding domain of tRNA ACL_0541 PF10458 Valyl tRNA synthetase tRNA binding arm ACL_0542 PF08245 Mur ligase middle domain ACL_0543 PF12146 Putative lysophospholipase ACL_0544 PF07690 Major Facilitator Superfamily ACL_0546 PF03551 Transcriptional regulator PadR-like family ACL_0547 PF02660 ACL_0547 ACL_0548 PF01628 HrcA protein C terminal domain ACL_0549 PF01025 GrpE ACL_0550 PF00012 Hsp70 protein ACL_0551 PF00226 DnaJ domain ACL_0551 PF00684 DnaJ central domain ACL_0551 PF01556 DnaJ C terminal domain ACL_0552 PF03099 Biotin/lipoate A/B protein ligase family ACL_0552 PF10437 Bacterial lipoate protein ligase C-terminus ACL_0553 PF02620 ACL_0553 ACL_0554 PF01783 Ribosomal L32p protein family ACL_0555 PF01795 MraW methylase family ACL_0556 PF01475 Ferric uptake regulator family ACL_0556 PF01553 Acyltransferase ACL_0557 PF01467 Cytidylyltransferase ACL_0558 PF00795 Carbon-nitrogen hydrolase ACL_0558 PF02540 NAD synthase ACL_0559 PF03054 tRNA methyl transferase ACL_0560 PF13538 UvrD-like helicase C-terminal domain ACL_0560 PF13604 AAA domain ACL_0560 PF14490 Helix-hairpin-helix containing domain ACL_0561 PF02230 Phospholipase/Carboxylesterase ACL_0562 PF00800 Prephenate dehydratase ACL_0563 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACL_0563 PF05979 Bacterial protein of unknown function (DUF896) ACL_0564 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACL_0565 PF01047 MarR family ACL_0566 PF02230 Phospholipase/Carboxylesterase ACL_0568 PF00293 NUDIX domain ACL_0569 PF05958 tRNA (Uracil-5-)-methyltransferase ACL_0574 PF13166 ACL_0574 ACL_0575 PF00211 Adenylate and Guanylate cyclase catalytic domain ACL_0580 PF00239 Resolvase, N terminal domain ACL_0580 PF07508 Recombinase ACL_0580 PF13408 Recombinase zinc beta ribbon domain ACL_0582 PF01381 Helix-turn-helix ACL_0583 PF01381 Helix-turn-helix ACL_0584 PF00589 Phage integrase family ACL_0584 PF13495 Phage integrase, N-terminal SAM-like domain ACL_0585 PF02498 ACL_0585 ACL_0585 PF03374 ACL_0585 ACL_0586 PF12728 Helix-turn-helix domain ACL_0587 PF14297 ACL_0587 ACL_0589 PF02384 N-6 DNA Methylase ACL_0589 PF12161 HsdM N-terminal domain ACL_0590 PF01420 Type I restriction modification DNA specificity domain ACL_0591 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACL_0591 PF04851 Type III restriction enzyme, res subunit ACL_0591 PF11867 ACL_0591 ACL_0594 PF02195 ParB-like nuclease domain ACL_0595 PF01555 DNA methylase ACL_0600 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACL_0600 PF02772 S-adenosylmethionine synthetase, central domain ACL_0600 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACL_0601 PF01844 HNH endonuclease ACL_0602 PF14130 ACL_0602 ACL_0604 PF13289 ACL_0604 ACL_0606 PF11185 ACL_0606 ACL_0608 PF03354 ACL_0608 ACL_0610 PF04860 Phage portal protein ACL_0611 PF04586 ACL_0611 ACL_0612 PF05065 Phage capsid family ACL_0615 PF04883 ACL_0615 ACL_0628 PF05105 ACL_0628 ACL_0629 PF09682 ACL_0629 ACL_0632 PF13365 Trypsin-like peptidase domain ACL_0633 PF07728 AAA domain (dynein-related subfamily) ACL_0634 PF10117 ACL_0634 ACL_0637 PF00636 Ribonuclease III domain ACL_0639 PF08282 haloacid dehalogenase-like hydrolase ACL_0640 PF01553 Acyltransferase ACL_0643 PF00005 ABC transporter ACL_0644 PF02687 ACL_0644 ACL_0645 PF07859 alpha/beta hydrolase fold ACL_0646 PF00849 RNA pseudouridylate synthase ACL_0647 PF00849 RNA pseudouridylate synthase ACL_0647 PF01479 S4 domain ACL_0648 PF01184 ACL_0648 ACL_0649 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACL_0650 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0651 PF00005 ABC transporter ACL_0652 PF01226 Formate/nitrite transporter ACL_0653 PF00106 short chain dehydrogenase ACL_0654 PF01641 SelR domain ACL_0655 PF02446 4-alpha-glucanotransferase ACL_0656 PF00128 Alpha amylase, catalytic domain ACL_0657 PF00128 Alpha amylase, catalytic domain ACL_0657 PF02903 Alpha amylase, N-terminal ig-like domain ACL_0657 PF16657 ACL_0657 ACL_0658 PF00128 Alpha amylase, catalytic domain ACL_0659 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0660 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0661 PF13416 Bacterial extracellular solute-binding protein ACL_0663 PF06691 ACL_0663 ACL_0664 PF06271 ACL_0664 ACL_0665 PF00128 Alpha amylase, catalytic domain ACL_0665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACL_0665 PF03714 Bacterial pullanase-associated domain ACL_0667 PF00128 Alpha amylase, catalytic domain ACL_0668 PF00005 ABC transporter ACL_0668 PF03459 TOBE domain ACL_0670 PF00255 Glutathione peroxidase ACL_0671 PF00571 CBS domain ACL_0671 PF01595 ACL_0671 ACL_0671 PF03471 Transporter associated domain ACL_0673 PF00990 GGDEF domain ACL_0673 PF01966 HD domain ACL_0673 PF07694 5TMR of 5TMR-LYT ACL_0675 PF04011 LemA family ACL_0676 PF00009 Elongation factor Tu GTP binding domain ACL_0676 PF00679 Elongation factor G C-terminus ACL_0676 PF03144 Elongation factor Tu domain 2 ACL_0676 PF06421 GTP-binding protein LepA C-terminus ACL_0678 PF04055 Radical SAM superfamily ACL_0678 PF06969 HemN C-terminal domain ACL_0679 PF00589 Phage integrase family ACL_0679 PF02899 Phage integrase, N-terminal SAM-like domain ACL_0680 PF01676 Metalloenzyme superfamily ACL_0681 PF03672 ACL_0681 ACL_0682 PF03602 Conserved hypothetical protein 95 ACL_0683 PF00591 Glycosyl transferase family, a/b domain ACL_0683 PF02885 Glycosyl transferase family, helical bundle domain ACL_0683 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ACL_0685 PF00300 Histidine phosphatase superfamily (branch 1) ACL_0686 PF00999 Sodium/hydrogen exchanger family ACL_0689 PF01553 Acyltransferase ACL_0690 PF00186 Dihydrofolate reductase ACL_0691 PF00303 Thymidylate synthase ACL_0692 PF01546 Peptidase family M20/M25/M40 ACL_0694 PF00436 Single-strand binding protein family ACL_0696 PF00675 Insulinase (Peptidase family M16) ACL_0697 PF05193 Peptidase M16 inactive domain ACL_0698 PF01048 Phosphorylase superfamily ACL_0699 PF01791 DeoC/LacD family aldolase ACL_0701 PF01975 Survival protein SurE ACL_0702 PF00133 tRNA synthetases class I (I, L, M and V) ACL_0702 PF08264 Anticodon-binding domain of tRNA ACL_0703 PF04472 Protein of unknown function (DUF552) ACL_0704 PF01168 Alanine racemase, N-terminal domain ACL_0705 PF01926 50S ribosome-binding GTPase ACL_0705 PF06071 Protein of unknown function (DUF933) ACL_0706 PF00091 Tubulin/FtsZ family, GTPase domain ACL_0706 PF12327 FtsZ family, C-terminal domain ACL_0707 PF01702 Queuine tRNA-ribosyltransferase ACL_0708 PF06177 ACL_0708 ACL_0709 PF00730 HhH-GPD superfamily base excision DNA repair protein ACL_0709 PF14815 NUDIX domain ACL_0710 PF00881 Nitroreductase family ACL_0711 PF00005 ABC transporter ACL_0711 PF02687 ACL_0711 ACL_0712 PF00005 ABC transporter ACL_0713 PF13419 Haloacid dehalogenase-like hydrolase ACL_0714 PF00356 Bacterial regulatory proteins, lacI family ACL_0714 PF13377 Periplasmic binding protein-like domain ACL_0715 PF00933 Glycosyl hydrolase family 3 N terminal domain ACL_0715 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACL_0717 PF00722 Glycosyl hydrolases family 16 ACL_0718 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0721 PF06930 ACL_0721 ACL_0722 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0723 PF00528 Binding-protein-dependent transport system inner membrane component ACL_0724 PF13416 Bacterial extracellular solute-binding protein ACL_0725 PF01547 Bacterial extracellular solute-binding protein ACL_0726 PF02055 O-Glycosyl hydrolase family 30 ACL_0726 PF17189 ACL_0726 ACL_0727 PF00722 Glycosyl hydrolases family 16 ACL_0729 PF06165 Glycosyltransferase family 36 ACL_0729 PF17167 ACL_0729 ACL_0730 PF00933 Glycosyl hydrolase family 3 N terminal domain ACL_0730 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACL_0730 PF14310 Fibronectin type III-like domain ACL_0731 PF01323 DSBA-like thioredoxin domain ACL_0733 PF01432 Peptidase family M3 ACL_0733 PF08439 Oligopeptidase F ACL_0735 PF01381 Helix-turn-helix ACL_0736 PF02645 Uncharacterised protein, DegV family COG1307 ACL_0738 PF04011 LemA family ACL_0739 PF01545 Cation efflux family ACL_0739 PF16916 ACL_0739 ACL_0740 PF03060 Nitronate monooxygenase ACL_0741 PF01575 MaoC like domain ACL_0742 PF02535 ACL_0742 ACL_0743 PF01325 Iron dependent repressor, N-terminal DNA binding domain ACL_0743 PF02742 Iron dependent repressor, metal binding and dimerisation domain ACL_0743 PF04023 FeoA domain ACL_0745 PF08327 Activator of Hsp90 ATPase homolog 1-like protein ACL_0746 PF13630 ACL_0746 ACL_0747 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACL_0751 PF01978 Sugar-specific transcriptional regulator TrmB ACL_0752 PF02583 Metal-sensitive transcriptional repressor ACL_0753 PF00581 Rhodanese-like domain ACL_0754 PF00581 Rhodanese-like domain ACL_0754 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACL_0754 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_0755 PF00581 Rhodanese-like domain ACL_0756 PF13192 Thioredoxin domain ACL_0757 PF03773 ACL_0757 ACL_0758 PF01022 Bacterial regulatory protein, arsR family ACL_0759 PF12679 ACL_0759 ACL_0760 PF00005 ABC transporter ACL_0761 PF13302 Acetyltransferase (GNAT) domain ACL_0763 PF03807 NADP oxidoreductase coenzyme F420-dependent ACL_0763 PF16654 ACL_0763 ACL_0764 PF08757 ACL_0764 ACL_0765 PF00248 Aldo/keto reductase family ACL_0767 PF05343 M42 glutamyl aminopeptidase ACL_0768 PF01554 MatE ACL_0770 PF13306 Leucine rich repeats (6 copies) ACL_0774 PF01061 ACL_0774 ACL_0775 PF00005 ABC transporter ACL_0776 PF00440 Bacterial regulatory proteins, tetR family ACL_0777 PF00291 Pyridoxal-phosphate dependent enzyme ACL_0778 PF05598 ACL_0778 ACL_0780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACL_0780 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_0781 PF00403 Heavy-metal-associated domain ACL_0782 PF00665 Integrase core domain ACL_0784 PF00583 Acetyltransferase (GNAT) family ACL_0786 PF01113 Dihydrodipicolinate reductase, N-terminus ACL_0786 PF05173 Dihydrodipicolinate reductase, C-terminus ACL_0787 PF00701 Dihydrodipicolinate synthetase family ACL_0788 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACL_0788 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACL_0789 PF00696 Amino acid kinase family ACL_0790 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACL_0790 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACL_0791 PF00149 Calcineurin-like phosphoesterase ACL_0791 PF02872 5'-nucleotidase, C-terminal domain ACL_0792 PF00989 PAS fold ACL_0792 PF00990 GGDEF domain ACL_0793 PF00478 IMP dehydrogenase / GMP reductase domain ACL_0794 PF01643 Acyl-ACP thioesterase ACL_0797 PF01070 FMN-dependent dehydrogenase ACL_0798 PF00288 GHMP kinases N terminal domain ACL_0798 PF08544 GHMP kinases C terminal ACL_0799 PF00288 GHMP kinases N terminal domain ACL_0800 PF00288 GHMP kinases N terminal domain ACL_0800 PF08544 GHMP kinases C terminal ACL_0801 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACL_0802 PF04227 Indigoidine synthase A like protein ACL_0803 PF00122 E1-E2 ATPase ACL_0803 PF00689 Cation transporting ATPase, C-terminus ACL_0803 PF00690 Cation transporter/ATPase, N-terminus ACL_0803 PF13246 Putative hydrolase of sodium-potassium ATPase alpha subunit ACL_0804 PF03009 Glycerophosphoryl diester phosphodiesterase family ACL_0805 PF03009 Glycerophosphoryl diester phosphodiesterase family ACL_0808 PF00013 KH domain ACL_0808 PF00575 S1 RNA binding domain ACL_0808 PF01138 3' exoribonuclease family, domain 1 ACL_0808 PF03725 3' exoribonuclease family, domain 2 ACL_0808 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACL_0809 PF00312 Ribosomal protein S15 ACL_0810 PF06153 Protein of unknown function (DUF970) ACL_0811 PF01687 Riboflavin kinase ACL_0811 PF06574 FAD synthetase ACL_0812 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACL_0813 PF00085 Thioredoxin ACL_0814 PF00488 MutS domain V ACL_0814 PF01713 Smr domain ACL_0815 PF01351 Ribonuclease HII ACL_0815 PF11858 Domain of unknown function (DUF3378) ACL_0817 PF00849 RNA pseudouridylate synthase ACL_0817 PF01479 S4 domain ACL_0818 PF01252 ACL_0818 ACL_0820 PF05362 Lon protease (S16) C-terminal proteolytic domain ACL_0821 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACL_0822 PF01625 Peptide methionine sulfoxide reductase ACL_0823 PF00152 tRNA synthetases class II (D, K and N) ACL_0823 PF01336 OB-fold nucleic acid binding domain ACL_0823 PF02938 GAD domain ACL_0824 PF03129 Anticodon binding domain ACL_0824 PF13393 Histidyl-tRNA synthetase ACL_0825 PF13302 Acetyltransferase (GNAT) domain ACL_0826 PF01594 ACL_0826 ACL_0827 PF02580 D-Tyr-tRNA(Tyr) deacylase ACL_0828 PF02824 TGS domain ACL_0828 PF04607 Region found in RelA / SpoT proteins ACL_0828 PF13291 ACT domain ACL_0828 PF13328 HD domain ACL_0829 PF00156 Phosphoribosyl transferase domain ACL_0830 PF05496 Holliday junction DNA helicase ruvB N-terminus ACL_0830 PF12002 MgsA AAA+ ATPase C terminal ACL_0830 PF16193 ACL_0830 ACL_0831 PF01965 DJ-1/PfpI family ACL_0832 PF00753 Metallo-beta-lactamase superfamily ACL_0832 PF07521 RNA-metabolising metallo-beta-lactamase ACL_0833 PF03838 Recombination protein U ACL_0834 PF09515 Thiamine transporter protein (Thia_YuaJ) ACL_0836 PF01957 NfeD-like C-terminal, partner-binding ACL_0837 PF01145 SPFH domain / Band 7 family ACL_0838 PF05343 M42 glutamyl aminopeptidase ACL_0839 PF00483 Nucleotidyl transferase ACL_0841 PF00453 Ribosomal protein L20 ACL_0842 PF01632 Ribosomal protein L35 ACL_0843 PF00707 Translation initiation factor IF-3, C-terminal domain ACL_0843 PF05198 Translation initiation factor IF-3, N-terminal domain ACL_0844 PF00005 ABC transporter ACL_0844 PF00664 ABC transporter transmembrane region ACL_0845 PF00005 ABC transporter ACL_0845 PF00664 ABC transporter transmembrane region ACL_0848 PF00557 Metallopeptidase family M24 ACL_0848 PF05195 Aminopeptidase P, N-terminal domain ACL_0849 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACL_0849 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACL_0849 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACL_0849 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACL_0850 PF03309 Type III pantothenate kinase ACL_0851 PF00753 Metallo-beta-lactamase superfamily ACL_0852 PF00471 Ribosomal protein L33 ACL_0853 PF00005 ABC transporter ACL_0853 PF12848 ABC transporter ACL_0855 PF00293 NUDIX domain ACL_0862 PF03575 Peptidase family S51 ACL_0866 PF00563 EAL domain ACL_0867 PF01633 Choline/ethanolamine kinase ACL_0868 PF12850 Calcineurin-like phosphoesterase superfamily domain ACL_0869 PF01725 Ham1 family ACL_0870 PF02517 CAAX protease self-immunity ACL_0871 PF12796 Ankyrin repeats (3 copies) ACL_0871 PF13637 Ankyrin repeats (many copies) ACL_0872 PF00216 Bacterial DNA-binding protein ACL_0873 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACL_0873 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACL_0874 PF01926 50S ribosome-binding GTPase ACL_0874 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACL_0875 PF00575 S1 RNA binding domain ACL_0876 PF02224 Cytidylate kinase ACL_0877 PF00849 RNA pseudouridylate synthase ACL_0877 PF01479 S4 domain ACL_0878 PF01132 Elongation factor P (EF-P) OB domain ACL_0878 PF08207 Elongation factor P (EF-P) KOW-like domain ACL_0878 PF09285 Elongation factor P, C-terminal ACL_0879 PF01220 Dehydroquinase class II ACL_0880 PF01202 Shikimate kinase ACL_0881 PF01715 IPP transferase ACL_0882 PF01119 DNA mismatch repair protein, C-terminal domain ACL_0882 PF08676 MutL C terminal dimerisation domain ACL_0882 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_0883 PF00488 MutS domain V ACL_0883 PF01624 MutS domain I ACL_0883 PF05190 MutS family domain IV ACL_0883 PF05192 MutS domain III ACL_0885 PF13277 YmdB-like protein ACL_0886 PF00013 KH domain ACL_0886 PF01966 HD domain ACL_0886 PF12072 ACL_0886 ACL_0888 PF00005 ABC transporter ACL_0888 PF00664 ABC transporter transmembrane region ACL_0889 PF00005 ABC transporter ACL_0889 PF00664 ABC transporter transmembrane region ACL_0890 PF00154 recA bacterial DNA recombination protein ACL_0891 PF01066 CDP-alcohol phosphatidyltransferase ACL_0892 PF01649 Ribosomal protein S20 ACL_0893 PF00929 Exonuclease ACL_0894 PF06144 DNA polymerase III, delta subunit ACL_0895 PF00753 Metallo-beta-lactamase superfamily ACL_0895 PF03772 ACL_0895 ACL_0896 PF10531 SLBB domain ACL_0896 PF12836 Helix-hairpin-helix motif ACL_0897 PF02410 Oligomerisation domain ACL_0898 PF01966 HD domain ACL_0899 PF01926 50S ribosome-binding GTPase ACL_0900 PF13242 HAD-hyrolase-like ACL_0901 PF01272 Transcription elongation factor, GreA/GreB, C-term ACL_0901 PF03449 Transcription elongation factor, N-terminal ACL_0902 PF01863 Protein of unknown function DUF45 ACL_0903 PF01596 O-methyltransferase ACL_0904 PF06949 ACL_0904 ACL_0905 PF03652 Uncharacterised protein family (UPF0081) ACL_0906 PF01411 tRNA synthetases class II (A) ACL_0906 PF02272 DHHA1 domain ACL_0906 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACL_0908 PF00571 CBS domain ACL_0908 PF01595 ACL_0908 ACL_0908 PF03471 Transporter associated domain ACL_0909 PF01966 HD domain ACL_0910 PF00990 GGDEF domain ACL_0911 PF00999 Sodium/hydrogen exchanger family ACL_0912 PF02417 ACL_0912 ACL_0913 PF08876 ACL_0913 ACL_0914 PF02645 Uncharacterised protein, DegV family COG1307 ACL_0915 PF01795 MraW methylase family ACL_0918 PF00375 Sodium:dicarboxylate symporter family ACL_0919 PF00293 NUDIX domain ACL_0922 PF13419 Haloacid dehalogenase-like hydrolase ACL_0931 PF13421 ACL_0931 ACL_0931 PF14237 ACL_0931 ACL_0932 PF12773 ACL_0932 ACL_0933 PF13443 Cro/C1-type HTH DNA-binding domain ACL_0934 PF07799 ACL_0934 ACL_0936 PF01844 HNH endonuclease ACL_0941 PF00005 ABC transporter ACL_0941 PF00664 ABC transporter transmembrane region ACL_0943 PF12847 Methyltransferase domain ACL_0944 PF00140 Sigma-70 factor, region 1 ACL_0944 PF04539 Sigma-70 region 3 ACL_0944 PF04542 Sigma-70 region 2 ACL_0944 PF04545 Sigma-70, region 4 ACL_0945 PF01807 CHC2 zinc finger ACL_0945 PF08275 DNA primase catalytic core, N-terminal domain ACL_0945 PF13662 Toprim domain ACL_0946 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACL_0946 PF03129 Anticodon binding domain ACL_0947 PF02565 Recombination protein O C terminal ACL_0947 PF11967 Recombination protein O N terminal ACL_0948 PF01926 50S ribosome-binding GTPase ACL_0948 PF07650 KH domain ACL_0949 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACL_0950 PF02130 Uncharacterized protein family UPF0054 ACL_0951 PF02562 PhoH-like protein ACL_0952 PF01165 Ribosomal protein S21 ACL_0953 PF04452 RNA methyltransferase ACL_0954 PF03840 Preprotein translocase SecG subunit ACL_0955 PF01497 Periplasmic binding protein ACL_0955 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_0956 PF00005 ABC transporter ACL_0957 PF01032 FecCD transport family ACL_0958 PF01032 FecCD transport family ACL_0959 PF03992 Antibiotic biosynthesis monooxygenase ACL_0960 PF00753 Metallo-beta-lactamase superfamily ACL_0961 PF02074 Carboxypeptidase Taq (M32) metallopeptidase ACL_0962 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACL_0962 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACL_0963 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ACL_0963 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACL_0964 PF01769 Divalent cation transporter ACL_0964 PF03448 MgtE intracellular N domain ACL_0965 PF01769 Divalent cation transporter ACL_0965 PF03448 MgtE intracellular N domain ACL_0966 PF03116 ACL_0966 ACL_0967 PF04205 FMN-binding domain ACL_0968 PF02508 ACL_0968 ACL_0969 PF02508 ACL_0969 ACL_0970 PF00111 2Fe-2S iron-sulfur cluster binding domain ACL_0970 PF00175 Oxidoreductase NAD-binding domain ACL_0970 PF00970 Oxidoreductase FAD-binding domain ACL_0971 PF01813 ATP synthase subunit D ACL_0972 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_0972 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_0973 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_0973 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_0973 PF16886 ACL_0973 ACL_0974 PF01990 ATP synthase (F/14-kDa) subunit ACL_0975 PF01992 ATP synthase (C/AC39) subunit ACL_0977 PF00137 ATP synthase subunit C ACL_0978 PF01496 V-type ATPase 116kDa subunit family ACL_0981 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACL_0982 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_0982 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_0983 PF00231 ATP synthase ACL_0984 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_0984 PF00306 ATP synthase alpha/beta chain, C terminal domain ACL_0984 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_0985 PF00213 ATP synthase delta (OSCP) subunit ACL_0986 PF00430 ATP synthase B/B' CF(0) ACL_0987 PF00137 ATP synthase subunit C ACL_0988 PF00119 ATP synthase A chain ACL_0991 PF01523 Putative modulator of DNA gyrase ACL_0992 PF01523 Putative modulator of DNA gyrase ACL_0993 PF00005 ABC transporter ACL_0993 PF00664 ABC transporter transmembrane region ACL_0994 PF00005 ABC transporter ACL_0994 PF00664 ABC transporter transmembrane region ACL_0996 PF09862 ACL_0996 ACL_0998 PF01546 Peptidase family M20/M25/M40 ACL_0998 PF07687 Peptidase dimerisation domain ACL_0999 PF00248 Aldo/keto reductase family ACL_1000 PF13304 AAA domain ACL_1001 PF00005 ABC transporter ACL_1002 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1003 PF03180 NLPA lipoprotein ACL_1004 PF00924 Mechanosensitive ion channel ACL_1007 PF00717 Peptidase S24-like ACL_1010 PF00717 Peptidase S24-like ACL_1014 PF00563 EAL domain ACL_1014 PF00990 GGDEF domain ACL_1015 PF00563 EAL domain ACL_1015 PF00990 GGDEF domain ACL_1016 PF01936 NYN domain ACL_1017 PF02645 Uncharacterised protein, DegV family COG1307 ACL_1019 PF13614 AAA domain ACL_1021 PF01432 Peptidase family M3 ACL_1021 PF08439 Oligopeptidase F ACL_1023 PF00271 Helicase conserved C-terminal domain ACL_1023 PF02151 UvrB/uvrC motif ACL_1023 PF04851 Type III restriction enzyme, res subunit ACL_1023 PF12344 Ultra-violet resistance protein B ACL_1024 PF03486 HI0933-like protein ACL_1025 PF02080 TrkA-C domain ACL_1025 PF02254 TrkA-N domain ACL_1026 PF02386 Cation transport protein ACL_1027 PF09529 ACL_1027 ACL_1028 PF00056 lactate/malate dehydrogenase, NAD binding domain ACL_1028 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACL_1033 PF13472 GDSL-like Lipase/Acylhydrolase family ACL_1035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACL_1035 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_1036 PF00132 Bacterial transferase hexapeptide (six repeats) ACL_1036 PF00483 Nucleotidyl transferase ACL_1037 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACL_1037 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACL_1037 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACL_1037 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACL_1039 PF02350 UDP-N-acetylglucosamine 2-epimerase ACL_1040 PF14897 ACL_1040 ACL_1041 PF00534 Glycosyl transferases group 1 ACL_1041 PF13439 Glycosyltransferase Family 4 ACL_1043 PF02350 UDP-N-acetylglucosamine 2-epimerase ACL_1044 PF01370 NAD dependent epimerase/dehydratase family ACL_1045 PF02719 Polysaccharide biosynthesis protein ACL_1045 PF08485 Polysaccharide biosynthesis protein C-terminal ACL_1046 PF00534 Glycosyl transferases group 1 ACL_1047 PF13419 Haloacid dehalogenase-like hydrolase ACL_1048 PF02655 ATP-grasp domain ACL_1049 PF02397 ACL_1049 ACL_1050 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACL_1051 PF08484 C-methyltransferase C-terminal domain ACL_1051 PF13412 Winged helix-turn-helix DNA-binding ACL_1052 PF16363 ACL_1052 ACL_1053 PF13619 ACL_1053 ACL_1054 PF01935 Domain of unknown function DUF87 ACL_1054 PF05872 ACL_1054 ACL_1055 PF13289 ACL_1055 ACL_1056 PF14253 ACL_1056 ACL_1057 PF07751 ACL_1057 ACL_1061 PF17167 ACL_1061 ACL_1062 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACL_1062 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACL_1062 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACL_1062 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACL_1063 PF00722 Glycosyl hydrolases family 16 ACL_1064 PF00480 ROK family ACL_1066 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1067 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1068 PF01547 Bacterial extracellular solute-binding protein ACL_1069 PF13245 Part of AAA domain ACL_1071 PF14350 ACL_1071 ACL_1072 PF01381 Helix-turn-helix ACL_1072 PF06114 Domain of unknown function (DUF955) ACL_1073 PF05015 Plasmid maintenance system killer protein ACL_1075 PF01145 SPFH domain / Band 7 family ACL_1075 PF15975 ACL_1075 ACL_1076 PF04226 ACL_1076 ACL_1078 PF09851 ACL_1078 ACL_1079 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_1080 PF06044 Dam-replacing family ACL_1080 PF10544 ACL_1080 ACL_1082 PF04556 ACL_1082 ACL_1083 PF01555 DNA methylase ACL_1084 PF02086 D12 class N6 adenine-specific DNA methyltransferase ACL_1085 PF00239 Resolvase, N terminal domain ACL_1086 PF00293 NUDIX domain ACL_1087 PF00271 Helicase conserved C-terminal domain ACL_1087 PF04851 Type III restriction enzyme, res subunit ACL_1087 PF11907 ACL_1087 ACL_1087 PF13091 PLD-like domain ACL_1088 PF14907 Uncharacterised nucleotidyltransferase ACL_1089 PF02719 Polysaccharide biosynthesis protein ACL_1089 PF13727 CoA-binding domain ACL_1090 PF00224 Pyruvate kinase, barrel domain ACL_1091 PF00365 Phosphofructokinase ACL_1092 PF00365 Phosphofructokinase ACL_1093 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACL_1093 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACL_1094 PF04932 ACL_1094 ACL_1095 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ACL_1095 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ACL_1096 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACL_1097 PF01475 Ferric uptake regulator family ACL_1098 PF00950 ACL_1098 ACL_1099 PF00005 ABC transporter ACL_1100 PF01297 Periplasmic solute binding protein family ACL_1101 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACL_1102 PF13673 Acetyltransferase (GNAT) domain ACL_1103 PF00005 ABC transporter ACL_1103 PF12848 ABC transporter ACL_1104 PF04172 ACL_1104 ACL_1105 PF03788 ACL_1105 ACL_1106 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACL_1106 PF01872 RibD C-terminal domain ACL_1107 PF00766 Electron transfer flavoprotein FAD-binding domain ACL_1107 PF01012 Electron transfer flavoprotein domain ACL_1108 PF01012 Electron transfer flavoprotein domain ACL_1109 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACL_1109 PF02770 Acyl-CoA dehydrogenase, middle domain ACL_1109 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACL_1110 PF00027 Cyclic nucleotide-binding domain ACL_1110 PF13545 Crp-like helix-turn-helix domain ACL_1111 PF03061 Thioesterase superfamily ACL_1113 PF03601 ACL_1113 ACL_1114 PF13529 Peptidase_C39 like family ACL_1118 PF12733 ACL_1118 ACL_1119 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_1120 PF06445 GyrI-like small molecule binding domain ACL_1120 PF12833 Helix-turn-helix domain ACL_1123 PF00581 Rhodanese-like domain ACL_1123 PF12368 ACL_1123 ACL_1124 PF00004 ATPase family associated with various cellular activities (AAA) ACL_1124 PF07724 AAA domain (Cdc48 subfamily) ACL_1124 PF10431 C-terminal, D2-small domain, of ClpB protein ACL_1125 PF02541 Ppx/GppA phosphatase family ACL_1127 PF00563 EAL domain ACL_1127 PF00990 GGDEF domain ACL_1128 PF09851 ACL_1128 ACL_1130 PF08713 DNA alkylation repair enzyme ACL_1131 PF00403 Heavy-metal-associated domain ACL_1132 PF00122 E1-E2 ATPase ACL_1132 PF00403 Heavy-metal-associated domain ACL_1132 PF00702 haloacid dehalogenase-like hydrolase ACL_1137 PF01965 DJ-1/PfpI family ACL_1138 PF01048 Phosphorylase superfamily ACL_1139 PF00485 Phosphoribulokinase / Uridine kinase family ACL_1148 PF02163 Peptidase family M50 ACL_1149 PF01148 Cytidylyltransferase family ACL_1150 PF01255 Putative undecaprenyl diphosphate synthase ACL_1151 PF01063 Aminotransferase class IV ACL_1154 PF01765 Ribosome recycling factor ACL_1155 PF00696 Amino acid kinase family ACL_1156 PF00889 Elongation factor TS ACL_1157 PF00318 Ribosomal protein S2 ACL_1157 PF07498 Rho termination factor, N-terminal domain ACL_1158 PF00692 dUTPase ACL_1159 PF00293 NUDIX domain ACL_1160 PF00589 Phage integrase family ACL_1160 PF02899 Phage integrase, N-terminal SAM-like domain ACL_1161 PF01134 Glucose inhibited division protein A ACL_1162 PF00230 Major intrinsic protein ACL_1164 PF12822 Protein of unknown function (DUF3816) ACL_1165 PF03167 Uracil DNA glycosylase superfamily ACL_1166 PF00717 Peptidase S24-like ACL_1167 PF01813 ATP synthase subunit D ACL_1168 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_1168 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_1169 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_1169 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_1169 PF16886 ACL_1169 ACL_1171 PF01990 ATP synthase (F/14-kDa) subunit ACL_1172 PF00137 ATP synthase subunit C ACL_1173 PF01496 V-type ATPase 116kDa subunit family ACL_1174 PF01992 ATP synthase (C/AC39) subunit ACL_1176 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACL_1176 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACL_1177 PF01928 CYTH domain ACL_1178 PF08378 ACL_1178 ACL_1180 PF03960 ArsC family ACL_1181 PF01432 Peptidase family M3 ACL_1181 PF08439 Oligopeptidase F ACL_1182 PF00579 tRNA synthetases class I (W and Y) ACL_1183 PF00563 EAL domain ACL_1184 PF00781 Diacylglycerol kinase catalytic domain ACL_1185 PF00579 tRNA synthetases class I (W and Y) ACL_1185 PF01479 S4 domain ACL_1186 PF00356 Bacterial regulatory proteins, lacI family ACL_1186 PF13377 Periplasmic binding protein-like domain ACL_1187 PF01245 Ribosomal protein L19 ACL_1188 PF01746 tRNA (Guanine-1)-methyltransferase ACL_1189 PF01782 RimM N-terminal domain ACL_1189 PF05239 PRC-barrel domain ACL_1190 PF13083 KH domain ACL_1191 PF00886 Ribosomal protein S16 ACL_1192 PF09902 ACL_1192 ACL_1193 PF00849 RNA pseudouridylate synthase ACL_1193 PF01479 S4 domain ACL_1194 PF01327 Polypeptide deformylase ACL_1195 PF00728 Glycosyl hydrolase family 20, catalytic domain ACL_1197 PF00588 SpoU rRNA Methylase family ACL_1198 PF02568 Thiamine biosynthesis protein (ThiI) ACL_1198 PF02926 THUMP domain ACL_1199 PF01590 GAF domain ACL_1200 PF00163 Ribosomal protein S4/S9 N-terminal domain ACL_1200 PF01479 S4 domain ACL_1201 PF02585 GlcNAc-PI de-N-acetylase ACL_1202 PF00583 Acetyltransferase (GNAT) family ACL_1203 PF13192 Thioredoxin domain ACL_1204 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_1206 PF00121 Triosephosphate isomerase ACL_1207 PF00381 PTS HPr component phosphorylation site ACL_1208 PF01381 Helix-turn-helix ACL_1208 PF07883 Cupin domain ACL_1209 PF00162 Phosphoglycerate kinase ACL_1210 PF06338 ACL_1210 ACL_1212 PF02368 Bacterial Ig-like domain (group 2) ACL_1213 PF01458 Uncharacterized protein family (UPF0051) ACL_1214 PF01592 NifU-like N terminal domain ACL_1215 PF00266 Aminotransferase class-V ACL_1216 PF01458 Uncharacterized protein family (UPF0051) ACL_1217 PF00005 ABC transporter ACL_1219 PF00005 ABC transporter ACL_1219 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACL_1220 PF00005 ABC transporter ACL_1220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACL_1221 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1221 PF12911 ACL_1221 ACL_1222 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1223 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACL_1224 PF13038 ACL_1224 ACL_1225 PF03572 Peptidase family S41 ACL_1225 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_1226 PF00440 Bacterial regulatory proteins, tetR family ACL_1228 PF03590 Aspartate-ammonia ligase ACL_1232 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACL_1233 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACL_1234 PF06182 ACL_1234 ACL_1235 PF06182 ACL_1235 ACL_1236 PF00005 ABC transporter ACL_1237 PF00005 ABC transporter ACL_1237 PF00664 ABC transporter transmembrane region ACL_1238 PF00005 ABC transporter ACL_1238 PF00664 ABC transporter transmembrane region ACL_1239 PF01047 MarR family ACL_1241 PF00932 Lamin Tail Domain ACL_1241 PF07523 Bacterial Ig-like domain (group 3) ACL_1242 PF09929 ACL_1242 ACL_1243 PF13561 Enoyl-(Acyl carrier protein) reductase ACL_1244 PF00293 NUDIX domain ACL_1247 PF00118 TCP-1/cpn60 chaperonin family ACL_1248 PF00166 Chaperonin 10 Kd subunit ACL_1249 PF06966 ACL_1249 ACL_1250 PF00005 ABC transporter ACL_1251 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACL_1251 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1252 PF00122 E1-E2 ATPase ACL_1252 PF00702 haloacid dehalogenase-like hydrolase ACL_1253 PF04471 Restriction endonuclease ACL_1254 PF10881 ACL_1254 ACL_1254 PF13086 AAA domain ACL_1254 PF13087 AAA domain ACL_1255 PF04471 Restriction endonuclease ACL_1256 PF09848 Uncharacterized conserved protein (DUF2075) ACL_1258 PF00122 E1-E2 ATPase ACL_1258 PF00403 Heavy-metal-associated domain ACL_1258 PF00702 haloacid dehalogenase-like hydrolase ACL_1259 PF01022 Bacterial regulatory protein, arsR family ACL_1263 PF08863 ACL_1263 ACL_1264 PF00817 impB/mucB/samB family ACL_1264 PF11798 IMS family HHH motif ACL_1264 PF11799 impB/mucB/samB family C-terminal domain ACL_1268 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_1269 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACL_1269 PF04851 Type III restriction enzyme, res subunit ACL_1271 PF01420 Type I restriction modification DNA specificity domain ACL_1272 PF02384 N-6 DNA Methylase ACL_1272 PF12161 HsdM N-terminal domain ACL_1274 PF01420 Type I restriction modification DNA specificity domain ACL_1274 PF02384 N-6 DNA Methylase ACL_1279 PF01381 Helix-turn-helix ACL_1281 PF00122 E1-E2 ATPase ACL_1281 PF00689 Cation transporting ATPase, C-terminus ACL_1281 PF00690 Cation transporter/ATPase, N-terminus ACL_1281 PF00702 haloacid dehalogenase-like hydrolase ACL_1282 PF00704 Glycosyl hydrolases family 18 ACL_1283 PF00005 ABC transporter ACL_1283 PF08402 TOBE domain ACL_1284 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1285 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1286 PF13416 Bacterial extracellular solute-binding protein ACL_1287 PF08818 Domain of unknown function (DU1801) ACL_1289 PF00268 Ribonucleotide reductase, small chain ACL_1290 PF00317 Ribonucleotide reductase, all-alpha domain ACL_1290 PF02867 Ribonucleotide reductase, barrel domain ACL_1290 PF08343 Ribonucleotide reductase N-terminal ACL_1291 PF07972 NrdI Flavodoxin like ACL_1292 PF04055 Radical SAM superfamily ACL_1292 PF13353 4Fe-4S single cluster domain ACL_1293 PF03477 ATP cone domain ACL_1293 PF13597 Anaerobic ribonucleoside-triphosphate reductase ACL_1294 PF00144 Beta-lactamase ACL_1296 PF06161 ACL_1296 ACL_1297 PF00512 His Kinase A (phospho-acceptor) domain ACL_1297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_1298 PF00072 Response regulator receiver domain ACL_1298 PF00486 Transcriptional regulatory protein, C terminal ACL_1299 PF01895 PhoU domain ACL_1300 PF00005 ABC transporter ACL_1301 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1302 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1303 PF12849 PBP superfamily domain ACL_1304 PF01061 ACL_1304 ACL_1305 PF00005 ABC transporter ACL_1305 PF13732 ACL_1305 ACL_1306 PF00781 Diacylglycerol kinase catalytic domain ACL_1307 PF03099 Biotin/lipoate A/B protein ligase family ACL_1309 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACL_1309 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_1310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACL_1310 PF00364 Biotin-requiring enzyme ACL_1310 PF02817 e3 binding domain ACL_1311 PF02779 Transketolase, pyrimidine binding domain ACL_1311 PF02780 Transketolase, C-terminal domain ACL_1312 PF00676 Dehydrogenase E1 component ACL_1313 PF02661 Fic/DOC family ACL_1314 PF04221 RelB antitoxin ACL_1316 PF00491 Arginase family ACL_1317 PF01276 Orn/Lys/Arg decarboxylase, major domain ACL_1317 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ACL_1319 PF03167 Uracil DNA glycosylase superfamily ACL_1320 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_1321 PF00925 GTP cyclohydrolase II ACL_1321 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACL_1322 PF08327 Activator of Hsp90 ATPase homolog 1-like protein ACL_1323 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACL_1324 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1325 PF00005 ABC transporter ACL_1326 PF01371 Trp repressor protein ACL_1327 PF00348 Polyprenyl synthetase ACL_1328 PF00990 GGDEF domain ACL_1328 PF08447 PAS fold ACL_1329 PF00171 Aldehyde dehydrogenase family ACL_1330 PF01699 Sodium/calcium exchanger protein ACL_1332 PF00206 Lyase ACL_1332 PF10397 Adenylosuccinate lyase C-terminus ACL_1333 PF00171 Aldehyde dehydrogenase family ACL_1334 PF13306 Leucine rich repeats (6 copies) ACL_1339 PF00575 S1 RNA binding domain ACL_1339 PF09371 Tex-like protein N-terminal domain ACL_1339 PF12836 Helix-hairpin-helix motif ACL_1339 PF16921 ACL_1339 ACL_1341 PF01648 4'-phosphopantetheinyl transferase superfamily ACL_1342 PF02650 WhiA C-terminal HTH domain ACL_1342 PF10298 WhiA N-terminal LAGLIDADG-like domain ACL_1342 PF14527 WhiA LAGLIDADG-like domain ACL_1343 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_1344 PF01790 ACL_1344 ACL_1344 PF13419 Haloacid dehalogenase-like hydrolase ACL_1345 PF02603 HPr Serine kinase N terminus ACL_1345 PF07475 HPr Serine kinase C-terminal domain ACL_1347 PF00005 ABC transporter ACL_1348 PF00533 BRCA1 C Terminus (BRCT) domain ACL_1348 PF01653 NAD-dependent DNA ligase adenylation domain ACL_1348 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ACL_1348 PF03120 NAD-dependent DNA ligase OB-fold domain ACL_1348 PF12826 Helix-hairpin-helix motif ACL_1348 PF14520 Helix-hairpin-helix domain ACL_1349 PF13245 Part of AAA domain ACL_1349 PF13361 UvrD-like helicase C-terminal domain ACL_1350 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_1351 PF13245 Part of AAA domain ACL_1351 PF13361 UvrD-like helicase C-terminal domain ACL_1352 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACL_1352 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ACL_1354 PF00814 Glycoprotease family ACL_1355 PF00583 Acetyltransferase (GNAT) family ACL_1356 PF00814 Glycoprotease family ACL_1357 PF02367 Uncharacterised P-loop hydrolase UPF0079 ACL_1358 PF00342 Phosphoglucose isomerase ACL_1359 PF00575 S1 RNA binding domain ACL_1361 PF02645 Uncharacterised protein, DegV family COG1307 ACL_1362 PF02681 ACL_1362 ACL_1363 PF01106 NifU-like domain ACL_1364 PF06265 Protein of unknown function (DUF1027) ACL_1365 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACL_1366 PF00990 GGDEF domain ACL_1368 PF02457 DisA bacterial checkpoint controller nucleotide-binding ACL_1369 PF01638 HxlR-like helix-turn-helix ACL_1370 PF01926 50S ribosome-binding GTPase ACL_1370 PF13167 ACL_1370 ACL_1370 PF16360 ACL_1370 ACL_1371 PF00860 Permease family ACL_1373 PF01156 Inosine-uridine preferring nucleoside hydrolase ACL_1374 PF00294 pfkB family carbohydrate kinase ACL_1375 PF13673 Acetyltransferase (GNAT) domain ACL_1376 PF00356 Bacterial regulatory proteins, lacI family ACL_1376 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ACL_1377 PF00860 Permease family ACL_1378 PF01207 Dihydrouridine synthase (Dus) ACL_1379 PF01430 Hsp33 protein ACL_1380 PF13349 ACL_1380 ACL_1381 PF08006 ACL_1381 ACL_1382 PF03551 Transcriptional regulator PadR-like family ACL_1383 PF02545 Maf-like protein ACL_1384 PF01171 PP-loop family ACL_1384 PF11734 TilS substrate C-terminal domain ACL_1385 PF00156 Phosphoribosyl transferase domain ACL_1386 PF00004 ATPase family associated with various cellular activities (AAA) ACL_1386 PF01434 Peptidase family M41 ACL_1387 PF01479 S4 domain ACL_1388 PF00152 tRNA synthetases class II (D, K and N) ACL_1388 PF01336 OB-fold nucleic acid binding domain ACL_1390 PF14066 ACL_1390 ACL_1392 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACL_1392 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACL_1393 PF08331 ACL_1393 ACL_1393 PF13484 ACL_1393 ACL_1395 PF01116 Fructose-bisphosphate aldolase class-II ACL_1396 PF00117 Glutamine amidotransferase class-I ACL_1396 PF06418 CTP synthase N-terminus ACL_1398 PF14249 ACL_1398 ACL_1400 PF00633 Helix-hairpin-helix motif ACL_1400 PF02132 RecR protein ACL_1400 PF13662 Toprim domain ACL_1401 PF02575 YbaB/EbfC DNA-binding family ACL_1402 PF13177 DNA polymerase III, delta subunit ACL_1403 PF01926 50S ribosome-binding GTPase ACL_1403 PF10396 GTP-binding protein TrmE N-terminus ACL_1403 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE ACL_1404 PF02308 ACL_1404 ACL_1405 PF01368 DHH family ACL_1405 PF02272 DHHA1 domain ACL_1406 PF01368 DHH family ACL_1406 PF02272 DHHA1 domain ACL_1407 PF00565 Staphylococcal nuclease homologue ACL_1407 PF00932 Lamin Tail Domain ACL_1410 PF13416 Bacterial extracellular solute-binding protein ACL_1411 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1412 PF00528 Binding-protein-dependent transport system inner membrane component ACL_1413 PF00005 ABC transporter ACL_1414 PF01940 ACL_1414 ACL_1415 PF00494 Squalene/phytoene synthase ACL_1416 PF01593 Flavin containing amine oxidoreductase ACL_1418 PF00005 ABC transporter ACL_1420 PF00255 Glutathione peroxidase ACL_1421 PF00072 Response regulator receiver domain ACL_1421 PF04397 LytTr DNA-binding domain ACL_1422 PF14501 GHKL domain ACL_1423 PF06966 ACL_1423 ACL_1424 PF02645 Uncharacterised protein, DegV family COG1307 ACL_1424 PF02734 DAK2 domain ACL_1425 PF09945 ACL_1425 ACL_1426 PF00875 DNA photolyase ACL_1427 PF00152 tRNA synthetases class II (D, K and N) ACL_1427 PF01336 OB-fold nucleic acid binding domain ACL_1428 PF02646 ACL_1428 ACL_1430 PF01424 R3H domain ACL_1430 PF13083 KH domain ACL_1430 PF14804 Jag N-terminus ACL_1431 PF02096 60Kd inner membrane protein ACL_1432 PF00825 Ribonuclease P ACL_1433 PF00468 Ribosomal protein L34