ACL_0001 SM00382 ATPases associated with a variety of cellular activities ACL_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain ACL_0006 SM00387 Histidine kinase-like ATPases ACL_0006 SM00433 TopoisomeraseII ACL_0007 SM00434 DNA Topoisomerase IV ACL_0008 SM00382 ATPases associated with a variety of cellular activities ACL_0010 SM00448 cheY-homologous receiver domain ACL_0010 SM00862 Transcriptional regulatory protein, C terminal ACL_0011 SM00387 Histidine kinase-like ATPases ACL_0011 SM00388 His Kinase A (phosphoacceptor) domain ACL_0014 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACL_0015 SM00493 ACL_0015 ACL_0016 SM00650 Ribosomal RNA adenine dimethylases ACL_0018 SM01400 ACL_0018 ACL_0020 SM00487 DEAD-like helicases superfamily ACL_0020 SM00490 helicase superfamily c-terminal domain ACL_0020 SM00982 ACL_0020 ACL_0020 SM01058 CarD-like/TRCF domain ACL_0023 SM01266 ACL_0023 ACL_0025 SM00155 Phospholipase D. Active site motifs. ACL_0030 SM00100 Cyclic nucleotide-monophosphate binding domain ACL_0030 SM00419 helix_turn_helix, cAMP Regulatory protein ACL_0035 SM00354 helix_turn _helix lactose operon repressor ACL_0039 SM01068 Putative carbohydrate binding domain ACL_0041 SM00644 ACL_0041 ACL_0042 SM00635 Bacterial Ig-like domain 2 ACL_0042 SM00644 ACL_0042 ACL_0045 SM00530 Helix-turn-helix XRE-family like proteins ACL_0062 SM00861 Transketolase, pyrimidine binding domain ACL_0063 SM01228 ACL_0063 ACL_0084 SM00347 helix_turn_helix multiple antibiotic resistance protein ACL_0086 SM01403 ACL_0086 ACL_0090 SM01382 ACL_0090 ACL_0090 SM01383 ACL_0090 ACL_0097 SM01374 ACL_0097 ACL_0110 SM00316 Ribosomal protein S1-like RNA-binding domain ACL_0114 SM00662 RNA polymerases D ACL_0123 SM00382 ATPases associated with a variety of cellular activities ACL_0124 SM00382 ATPases associated with a variety of cellular activities ACL_0136 SM00091 PAS domain ACL_0136 SM00267 diguanylate cyclase ACL_0146 SM00967 RNA 2'-O ribose methyltransferase substrate binding ACL_0151 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ACL_0163 SM00244 prohibitin homologues ACL_0166 SM00649 Ribosomal protein L11/L12 ACL_0172 SM00663 RNA polymerase I subunit A N-terminus ACL_0174 SM00267 diguanylate cyclase ACL_0187 SM00838 Elongation factor G C-terminus ACL_0187 SM00889 Elongation factor G, domain IV ACL_0196 SM00267 diguanylate cyclase ACL_0201 SM00937 ACL_0201 ACL_0211 SM00849 Metallo-beta-lactamase superfamily ACL_0219 SM00830 Chorismate mutase type II ACL_0226 SM00487 DEAD-like helicases superfamily ACL_0226 SM00490 helicase superfamily c-terminal domain ACL_0228 SM00358 Double-stranded RNA binding motif ACL_0228 SM00535 Ribonuclease III family ACL_0230 SM00478 endonuclease III ACL_0231 SM00530 Helix-turn-helix XRE-family like proteins ACL_0232 SM00382 ATPases associated with a variety of cellular activities ACL_0233 SM00382 ATPases associated with a variety of cellular activities ACL_0243 SM00855 Phosphoglycerate mutase family ACL_0245 SM00729 Elongator protein 3, MiaB family, Radical SAM ACL_0247 SM00479 ACL_0247 ACL_0247 SM00481 DNA polymerase alpha chain like domain ACL_0250 SM00873 B3/4 domain ACL_0250 SM00874 tRNA synthetase B5 domain ACL_0250 SM00896 Ferredoxin-fold anticodon binding domain ACL_0251 SM00729 Elongator protein 3, MiaB family, Radical SAM ACL_0254 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain ACL_0256 SM01120 ACL_0256 ACL_0256 SM01121 ACL_0256 ACL_0268 SM00635 Bacterial Ig-like domain 2 ACL_0268 SM00644 ACL_0268 ACL_0293 SM00357 Cold shock protein domain ACL_0296 SM00946 Prolyl-tRNA synthetase, C-terminal ACL_0298 SM00838 Elongation factor G C-terminus ACL_0298 SM00889 Elongation factor G, domain IV ACL_0304 SM00072 Guanylate kinase homologues. ACL_0305 SM01409 ACL_0305 ACL_0306 SM00465 GIY-YIG type nucleases (URI domain) ACL_0307 SM00479 ACL_0307 ACL_0309 SM00849 Metallo-beta-lactamase superfamily ACL_0315 SM00764 Citrate lyase ligase C-terminal domain ACL_0317 SM00316 Ribosomal protein S1-like RNA-binding domain ACL_0323 SM00850 LytTr DNA-binding domain ACL_0330 SM00957 SecA DEAD-like domain ACL_0330 SM00958 SecA preprotein cross-linking domain ACL_0331 SM00937 ACL_0331 ACL_0336 SM00382 ATPases associated with a variety of cellular activities ACL_0336 SM00843 ACL_0336 ACL_0339 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ACL_0339 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ACL_0339 SM00493 ACL_0339 ACL_0341 SM00382 ATPases associated with a variety of cellular activities ACL_0343 SM00382 ATPases associated with a variety of cellular activities ACL_0347 SM00382 ATPases associated with a variety of cellular activities ACL_0347 SM00962 SRP54-type protein, GTPase domain ACL_0347 SM00963 SRP54-type protein, helical bundle domain ACL_0349 SM00382 ATPases associated with a variety of cellular activities ACL_0349 SM00962 SRP54-type protein, GTPase domain ACL_0349 SM00963 SRP54-type protein, helical bundle domain ACL_0350 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ACL_0350 SM00474 3'-5' exonuclease ACL_0350 SM00475 5'-3' exonuclease ACL_0350 SM00482 DNA polymerase A domain ACL_0351 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ACL_0351 SM01232 ACL_0351 ACL_0353 SM00382 ATPases associated with a variety of cellular activities ACL_0354 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ACL_0355 SM00382 ATPases associated with a variety of cellular activities ACL_0369 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ACL_0370 SM00382 ATPases associated with a variety of cellular activities ACL_0379 SM00387 Histidine kinase-like ATPases ACL_0379 SM00433 TopoisomeraseII ACL_0380 SM00434 DNA Topoisomerase IV ACL_0402 SM01192 ACL_0402 ACL_0402 SM01193 ACL_0402 ACL_0403 SM00851 MGS-like domain ACL_0405 SM00316 Ribosomal protein S1-like RNA-binding domain ACL_0405 SM00955 ACL_0405 ACL_0408 SM00014 Acid phosphatase homologues ACL_0411 SM00341 Helicase and RNase D C-terminal ACL_0416 SM00347 helix_turn_helix multiple antibiotic resistance protein ACL_0417 SM00382 ATPases associated with a variety of cellular activities ACL_0418 SM00382 ATPases associated with a variety of cellular activities ACL_0432 SM00487 DEAD-like helicases superfamily ACL_0432 SM00490 helicase superfamily c-terminal domain ACL_0445 SM00530 Helix-turn-helix XRE-family like proteins ACL_0447 SM00267 diguanylate cyclase ACL_0448 SM00642 Alpha-amylase domain ACL_0449 SM00327 von Willebrand factor (vWF) type A domain ACL_0451 SM00267 diguanylate cyclase ACL_0458 SM00878 Biotin carboxylase C-terminal domain ACL_0462 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ACL_0463 SM00822 ACL_0463 ACL_0464 SM00825 Beta-ketoacyl synthase ACL_0471 SM00382 ATPases associated with a variety of cellular activities ACL_0478 SM00363 S4 RNA-binding domain ACL_0481 SM00487 DEAD-like helicases superfamily ACL_0481 SM00490 helicase superfamily c-terminal domain ACL_0482 SM00518 AP endonuclease family 2 ACL_0485 SM00836 DALR anticodon binding domain ACL_0485 SM01016 Arginyl tRNA synthetase N terminal dom ACL_0490 SM00226 Low molecular weight phosphatase family ACL_0499 SM00382 ATPases associated with a variety of cellular activities ACL_0500 SM00382 ATPases associated with a variety of cellular activities ACL_0504 SM00822 ACL_0504 ACL_0512 SM00487 DEAD-like helicases superfamily ACL_0512 SM00490 helicase superfamily c-terminal domain ACL_0520 SM00635 Bacterial Ig-like domain 2 ACL_0520 SM00710 Parallel beta-helix repeats ACL_0529 SM00642 Alpha-amylase domain ACL_0530 SM00354 helix_turn _helix lactose operon repressor ACL_0531 SM00642 Alpha-amylase domain ACL_0536 SM00382 ATPases associated with a variety of cellular activities ACL_0536 SM00464 Found in ATP-dependent protease La (LON) ACL_0547 SM01207 ACL_0547 ACL_0551 SM00271 DnaJ molecular chaperone homology domain ACL_0556 SM00563 Phosphate acyltransferases ACL_0560 SM00382 ATPases associated with a variety of cellular activities ACL_0565 SM00347 helix_turn_helix multiple antibiotic resistance protein ACL_0580 SM00857 Resolvase, N terminal domain ACL_0582 SM00530 Helix-turn-helix XRE-family like proteins ACL_0583 SM00530 Helix-turn-helix XRE-family like proteins ACL_0585 SM01040 BRO family, N-terminal domain ACL_0591 SM00487 DEAD-like helicases superfamily ACL_0594 SM00470 ParB-like nuclease domain ACL_0601 SM00507 HNH nucleases ACL_0633 SM00382 ATPases associated with a variety of cellular activities ACL_0637 SM00535 Ribonuclease III family ACL_0640 SM00563 Phosphate acyltransferases ACL_0642 SM00347 helix_turn_helix multiple antibiotic resistance protein ACL_0643 SM00382 ATPases associated with a variety of cellular activities ACL_0647 SM00363 S4 RNA-binding domain ACL_0649 SM00062 Bacterial periplasmic substrate-binding proteins ACL_0651 SM00382 ATPases associated with a variety of cellular activities ACL_0656 SM00642 Alpha-amylase domain ACL_0657 SM00642 Alpha-amylase domain ACL_0658 SM00642 Alpha-amylase domain ACL_0665 SM00642 Alpha-amylase domain ACL_0667 SM00642 Alpha-amylase domain ACL_0668 SM00382 ATPases associated with a variety of cellular activities ACL_0671 SM01091 Transporter associated domain ACL_0673 SM00267 diguanylate cyclase ACL_0673 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACL_0676 SM00838 Elongation factor G C-terminus ACL_0678 SM00729 Elongator protein 3, MiaB family, Radical SAM ACL_0683 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain ACL_0685 SM00855 Phosphoglycerate mutase family ACL_0689 SM00563 Phosphate acyltransferases ACL_0699 SM01133 ACL_0699 ACL_0706 SM00864 Tubulin/FtsZ family, GTPase domain ACL_0706 SM00865 Tubulin/FtsZ family, C-terminal domain ACL_0709 SM00478 endonuclease III ACL_0709 SM00525 ACL_0709 ACL_0711 SM00382 ATPases associated with a variety of cellular activities ACL_0712 SM00382 ATPases associated with a variety of cellular activities ACL_0714 SM00354 helix_turn _helix lactose operon repressor ACL_0730 SM01217 ACL_0730 ACL_0735 SM00530 Helix-turn-helix XRE-family like proteins ACL_0743 SM00529 Helix-turn-helix diphteria tox regulatory element ACL_0753 SM00450 Rhodanese Homology Domain ACL_0754 SM00450 Rhodanese Homology Domain ACL_0755 SM00450 Rhodanese Homology Domain ACL_0758 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ACL_0760 SM00382 ATPases associated with a variety of cellular activities ACL_0775 SM00382 ATPases associated with a variety of cellular activities ACL_0787 SM01130 ACL_0787 ACL_0788 SM00859 Semialdehyde dehydrogenase, NAD binding domain ACL_0792 SM00091 PAS domain ACL_0792 SM00267 diguanylate cyclase ACL_0793 SM01240 ACL_0793 ACL_0803 SM00831 Cation transporter/ATPase, N-terminus ACL_0808 SM00316 Ribosomal protein S1-like RNA-binding domain ACL_0808 SM00322 K homology RNA-binding domain ACL_0809 SM01387 ACL_0809 ACL_0811 SM00904 Riboflavin kinase ACL_0814 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ACL_0814 SM00534 ATPase domain of DNA mismatch repair MUTS family ACL_0817 SM00363 S4 RNA-binding domain ACL_0828 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACL_0828 SM00954 Region found in RelA / SpoT proteins ACL_0830 SM00382 ATPases associated with a variety of cellular activities ACL_0832 SM00849 Metallo-beta-lactamase superfamily ACL_0837 SM00244 prohibitin homologues ACL_0844 SM00382 ATPases associated with a variety of cellular activities ACL_0845 SM00382 ATPases associated with a variety of cellular activities ACL_0848 SM01011 Aminopeptidase P, N-terminal domain ACL_0851 SM00849 Metallo-beta-lactamase superfamily ACL_0853 SM00382 ATPases associated with a variety of cellular activities ACL_0866 SM00052 Putative diguanylate phosphodiesterase ACL_0871 SM00248 ankyrin repeats ACL_0872 SM00411 bacterial (prokaryotic) histone like domain ACL_0875 SM00316 Ribosomal protein S1-like RNA-binding domain ACL_0877 SM00363 S4 RNA-binding domain ACL_0878 SM00841 Elongation factor P, C-terminal ACL_0878 SM01185 ACL_0878 ACL_0882 SM00853 MutL C terminal dimerisation domain ACL_0882 SM01340 ACL_0882 ACL_0883 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ACL_0883 SM00534 ATPase domain of DNA mismatch repair MUTS family ACL_0886 SM00322 K homology RNA-binding domain ACL_0886 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACL_0888 SM00382 ATPases associated with a variety of cellular activities ACL_0889 SM00382 ATPases associated with a variety of cellular activities ACL_0890 SM00382 ATPases associated with a variety of cellular activities ACL_0893 SM00479 ACL_0893 ACL_0895 SM00849 Metallo-beta-lactamase superfamily ACL_0898 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACL_0905 SM00732 Likely ribonuclease with RNase H fold. ACL_0906 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ACL_0908 SM00116 Domain in cystathionine beta-synthase and other proteins. ACL_0908 SM01091 Transporter associated domain ACL_0910 SM00267 diguanylate cyclase ACL_0936 SM00507 HNH nucleases ACL_0941 SM00382 ATPases associated with a variety of cellular activities ACL_0945 SM00400 zinc finger ACL_0945 SM00493 ACL_0945 ACL_0956 SM00382 ATPases associated with a variety of cellular activities ACL_0960 SM00849 Metallo-beta-lactamase superfamily ACL_0963 SM01350 ACL_0963 ACL_0965 SM00924 MgtE intracellular N domain ACL_0967 SM00900 ACL_0967 ACL_0982 SM00382 ATPases associated with a variety of cellular activities ACL_0993 SM00382 ATPases associated with a variety of cellular activities ACL_0994 SM00382 ATPases associated with a variety of cellular activities ACL_1001 SM00382 ATPases associated with a variety of cellular activities ACL_1005 SM00495 Chitin-binding domain type 3 ACL_1014 SM00052 Putative diguanylate phosphodiesterase ACL_1014 SM00267 diguanylate cyclase ACL_1015 SM00052 Putative diguanylate phosphodiesterase ACL_1015 SM00267 diguanylate cyclase ACL_1023 SM00487 DEAD-like helicases superfamily ACL_1023 SM00490 helicase superfamily c-terminal domain ACL_1072 SM00530 Helix-turn-helix XRE-family like proteins ACL_1075 SM00244 prohibitin homologues ACL_1080 SM00974 ACL_1080 ACL_1085 SM00857 Resolvase, N terminal domain ACL_1087 SM00487 DEAD-like helicases superfamily ACL_1087 SM00490 helicase superfamily c-terminal domain ACL_1093 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACL_1095 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ACL_1095 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ACL_1099 SM00382 ATPases associated with a variety of cellular activities ACL_1103 SM00382 ATPases associated with a variety of cellular activities ACL_1107 SM00893 Electron transfer flavoprotein domain ACL_1108 SM00893 Electron transfer flavoprotein domain ACL_1110 SM00100 Cyclic nucleotide-monophosphate binding domain ACL_1110 SM00419 helix_turn_helix, cAMP Regulatory protein ACL_1120 SM00342 helix_turn_helix, arabinose operon control protein ACL_1120 SM00871 Bacterial transcription activator, effector binding domain ACL_1123 SM00450 Rhodanese Homology Domain ACL_1124 SM00382 ATPases associated with a variety of cellular activities ACL_1124 SM01086 C-terminal, D2-small domain, of ClpB protein ACL_1127 SM00052 Putative diguanylate phosphodiesterase ACL_1127 SM00267 diguanylate cyclase ACL_1148 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACL_1157 SM00959 Rho termination factor, N-terminal domain ACL_1165 SM00986 Uracil DNA glycosylase superfamily ACL_1165 SM00987 UreE urease accessory protein, C-terminal domain ACL_1176 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACL_1177 SM01118 ACL_1177 ACL_1183 SM00052 Putative diguanylate phosphodiesterase ACL_1186 SM00354 helix_turn _helix lactose operon repressor ACL_1193 SM00363 S4 RNA-binding domain ACL_1198 SM00981 ACL_1198 ACL_1200 SM00363 S4 RNA-binding domain ACL_1200 SM01390 ACL_1200 ACL_1208 SM00530 Helix-turn-helix XRE-family like proteins ACL_1217 SM00382 ATPases associated with a variety of cellular activities ACL_1219 SM00382 ATPases associated with a variety of cellular activities ACL_1220 SM00382 ATPases associated with a variety of cellular activities ACL_1236 SM00382 ATPases associated with a variety of cellular activities ACL_1237 SM00382 ATPases associated with a variety of cellular activities ACL_1238 SM00382 ATPases associated with a variety of cellular activities ACL_1239 SM00347 helix_turn_helix multiple antibiotic resistance protein ACL_1248 SM00883 Chaperonin 10 Kd subunit ACL_1250 SM00382 ATPases associated with a variety of cellular activities ACL_1251 SM00062 Bacterial periplasmic substrate-binding proteins ACL_1259 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ACL_1269 SM00487 DEAD-like helicases superfamily ACL_1279 SM00530 Helix-turn-helix XRE-family like proteins ACL_1281 SM00831 Cation transporter/ATPase, N-terminus ACL_1282 SM00636 ACL_1282 ACL_1283 SM00382 ATPases associated with a variety of cellular activities ACL_1297 SM00387 Histidine kinase-like ATPases ACL_1297 SM00388 His Kinase A (phosphoacceptor) domain ACL_1298 SM00448 cheY-homologous receiver domain ACL_1298 SM00862 Transcriptional regulatory protein, C terminal ACL_1300 SM00382 ATPases associated with a variety of cellular activities ACL_1305 SM00382 ATPases associated with a variety of cellular activities ACL_1306 SM00046 Diacylglycerol kinase catalytic domain (presumed) ACL_1311 SM00861 Transketolase, pyrimidine binding domain ACL_1319 SM00986 Uracil DNA glycosylase superfamily ACL_1319 SM00987 UreE urease accessory protein, C-terminal domain ACL_1323 SM00062 Bacterial periplasmic substrate-binding proteins ACL_1323 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ACL_1325 SM00382 ATPases associated with a variety of cellular activities ACL_1328 SM00267 diguanylate cyclase ACL_1332 SM00998 Adenylosuccinate lyase C-terminus ACL_1339 SM00316 Ribosomal protein S1-like RNA-binding domain ACL_1339 SM00732 Likely ribonuclease with RNase H fold. ACL_1348 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ACL_1348 SM00292 breast cancer carboxy-terminal domain ACL_1348 SM00532 Ligase N family ACL_1359 SM00316 Ribosomal protein S1-like RNA-binding domain ACL_1376 SM00354 helix_turn _helix lactose operon repressor ACL_1384 SM00977 TilS substrate C-terminal domain ACL_1386 SM00382 ATPases associated with a variety of cellular activities ACL_1387 SM00363 S4 RNA-binding domain ACL_1400 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ACL_1400 SM00493 ACL_1400 ACL_1402 SM00382 ATPases associated with a variety of cellular activities ACL_1413 SM00382 ATPases associated with a variety of cellular activities ACL_1418 SM00382 ATPases associated with a variety of cellular activities ACL_1421 SM00448 cheY-homologous receiver domain ACL_1421 SM00850 LytTr DNA-binding domain ACL_1424 SM01120 ACL_1424 ACL_1424 SM01121 ACL_1424 ACL_1430 SM00393 Putative single-stranded nucleic acids-binding domain ACL_1430 SM01245 ACL_1430