locus-tag class description LYZ39_00005 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00010 PF00005 ABC transporter LYZ39_00015 PF01168 Alanine racemase, N-terminal domain LYZ39_00015 PF14031 Putative serine dehydratase domain LYZ39_00020 PF16868 NMT1-like family LYZ39_00030 PF04361 Protein of unknown function (DUF494) LYZ39_00035 PF00749 tRNA synthetases class I (E and Q), catalytic domain LYZ39_00045 PF01751 Toprim domain LYZ39_00045 PF01131 DNA topoisomerase LYZ39_00055 PF00005 ABC transporter LYZ39_00060 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_00070 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_00070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_00075 PF01037 Lrp/AsnC ligand binding domain LYZ39_00080 PF01062 Bestrophin, RFP-TM, chloride channel LYZ39_00090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LYZ39_00095 PF07690 Major Facilitator Superfamily LYZ39_00110 PF01613 Flavin reductase like domain LYZ39_00125 PF08546 Ketopantoate reductase PanE/ApbA C terminal LYZ39_00125 PF02558 Ketopantoate reductase PanE/ApbA LYZ39_00135 PF02608 ABC transporter substrate-binding protein PnrA-like LYZ39_00140 PF00005 ABC transporter LYZ39_00145 PF02653 Branched-chain amino acid transport system / permease component LYZ39_00155 PF07969 Amidohydrolase family LYZ39_00160 PF01042 Endoribonuclease L-PSP LYZ39_00170 PF01968 Hydantoinase/oxoprolinase LYZ39_00170 PF05378 Hydantoinase/oxoprolinase N-terminal region LYZ39_00175 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_00180 PF03466 LysR substrate binding domain LYZ39_00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_00190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_00205 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_00205 PF04324 BFD-like [2Fe-2S] binding domain LYZ39_00215 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00220 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00225 PF00005 ABC transporter LYZ39_00225 PF08402 TOBE domain LYZ39_00235 PF01070 FMN-dependent dehydrogenase LYZ39_00245 PF00708 Acylphosphatase LYZ39_00250 PF00892 EamA-like transporter family LYZ39_00255 PF01212 Beta-eliminating lyase LYZ39_00260 PF00005 ABC transporter LYZ39_00265 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00270 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00275 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_00280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_00280 PF03466 LysR substrate binding domain LYZ39_00285 PF01613 Flavin reductase like domain LYZ39_00295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_00295 PF03466 LysR substrate binding domain LYZ39_00300 PF00986 DNA gyrase B subunit, carboxyl terminus LYZ39_00300 PF18053 DNA gyrase B subunit insert domain LYZ39_00300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_00300 PF01751 Toprim domain LYZ39_00300 PF00204 DNA gyrase B LYZ39_00305 PF00712 DNA polymerase III beta subunit, N-terminal domain LYZ39_00305 PF02767 DNA polymerase III beta subunit, central domain LYZ39_00305 PF02768 DNA polymerase III beta subunit, C-terminal domain LYZ39_00310 PF11638 DnaA N-terminal domain LYZ39_00310 PF00308 Bacterial dnaA protein LYZ39_00310 PF08299 Bacterial dnaA protein helix-turn-helix LYZ39_00315 PF00468 Ribosomal protein L34 LYZ39_00320 PF00825 Ribonuclease P LYZ39_00325 PF01809 Putative membrane protein insertion efficiency factor LYZ39_00330 PF02096 60Kd inner membrane protein LYZ39_00330 PF14849 YidC periplasmic domain LYZ39_00335 PF06628 Catalase-related immune-responsive LYZ39_00335 PF00199 Catalase LYZ39_00340 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00345 PF00005 ABC transporter LYZ39_00355 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LYZ39_00360 PF01546 Peptidase family M20/M25/M40 LYZ39_00360 PF07687 Peptidase dimerisation domain LYZ39_00365 PF00005 ABC transporter LYZ39_00365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_00370 PF00005 ABC transporter LYZ39_00370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_00375 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00375 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_00380 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_00385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_00390 PF01926 50S ribosome-binding GTPase LYZ39_00390 PF12631 MnmE helical domain LYZ39_00390 PF10396 GTP-binding protein TrmE N-terminus LYZ39_00400 PF00654 Voltage gated chloride channel LYZ39_00405 PF00072 Response regulator receiver domain LYZ39_00405 PF00486 Transcriptional regulatory protein, C terminal LYZ39_00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_00410 PF00672 HAMP domain LYZ39_00410 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_00425 PF01970 Tripartite tricarboxylate transporter TctA family LYZ39_00430 PF00155 Aminotransferase class I and II LYZ39_00435 PF05145 Transition state regulatory protein AbrB LYZ39_00440 PF00313 'Cold-shock' DNA-binding domain LYZ39_00445 PF01134 Glucose inhibited division protein A LYZ39_00445 PF13932 GidA associated domain LYZ39_00450 PF02527 rRNA small subunit methyltransferase G LYZ39_00455 PF13614 AAA domain LYZ39_00465 PF17762 HTH domain found in ParB protein LYZ39_00465 PF02195 ParB-like nuclease domain LYZ39_00470 PF00710 Asparaginase, N-terminal LYZ39_00470 PF17763 Glutaminase/Asparaginase C-terminal domain LYZ39_00475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_00475 PF03466 LysR substrate binding domain LYZ39_00485 PF01053 Cys/Met metabolism PLP-dependent enzyme LYZ39_00495 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_00500 PF00455 DeoR C terminal sensor domain LYZ39_00500 PF08220 DeoR-like helix-turn-helix domain LYZ39_00510 PF00005 ABC transporter LYZ39_00520 PF00459 Inositol monophosphatase family LYZ39_00525 PF00120 Glutamine synthetase, catalytic domain LYZ39_00530 PF00171 Aldehyde dehydrogenase family LYZ39_00535 PF00465 Iron-containing alcohol dehydrogenase LYZ39_00555 PF03143 Elongation factor Tu C-terminal domain LYZ39_00555 PF03144 Elongation factor Tu domain 2 LYZ39_00555 PF00009 Elongation factor Tu GTP binding domain LYZ39_00570 PF00467 KOW motif LYZ39_00570 PF02357 Transcription termination factor nusG LYZ39_00575 PF00298 Ribosomal protein L11, RNA binding domain LYZ39_00575 PF03946 Ribosomal protein L11, N-terminal domain LYZ39_00580 PF00687 Ribosomal protein L1p/L10e family LYZ39_00585 PF00466 Ribosomal protein L10 LYZ39_00590 PF16320 Ribosomal protein L7/L12 dimerisation domain LYZ39_00590 PF00542 Ribosomal protein L7/L12 C-terminal domain LYZ39_00595 PF04560 RNA polymerase Rpb2, domain 7 LYZ39_00595 PF00562 RNA polymerase Rpb2, domain 6 LYZ39_00595 PF10385 RNA polymerase beta subunit external 1 domain LYZ39_00595 PF04561 RNA polymerase Rpb2, domain 2 LYZ39_00595 PF04565 RNA polymerase Rpb2, domain 3 LYZ39_00595 PF04563 RNA polymerase beta subunit LYZ39_00600 PF04998 RNA polymerase Rpb1, domain 5 LYZ39_00600 PF04997 RNA polymerase Rpb1, domain 1 LYZ39_00600 PF00623 RNA polymerase Rpb1, domain 2 LYZ39_00600 PF04983 RNA polymerase Rpb1, domain 3 LYZ39_00600 PF05000 RNA polymerase Rpb1, domain 4 LYZ39_00615 PF16736 Single Cache-like LYZ39_00615 PF00989 PAS fold LYZ39_00615 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_00615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_00625 PF00486 Transcriptional regulatory protein, C terminal LYZ39_00625 PF00072 Response regulator receiver domain LYZ39_00630 PF00072 Response regulator receiver domain LYZ39_00630 PF00486 Transcriptional regulatory protein, C terminal LYZ39_00635 PF00164 Ribosomal protein S12/S23 LYZ39_00640 PF00177 Ribosomal protein S7p/S5e LYZ39_00645 PF00679 Elongation factor G C-terminus LYZ39_00645 PF14492 Elongation Factor G, domain II LYZ39_00645 PF03764 Elongation factor G, domain IV LYZ39_00645 PF00009 Elongation factor Tu GTP binding domain LYZ39_00645 PF03144 Elongation factor Tu domain 2 LYZ39_00650 PF00009 Elongation factor Tu GTP binding domain LYZ39_00650 PF03143 Elongation factor Tu C-terminal domain LYZ39_00650 PF03144 Elongation factor Tu domain 2 LYZ39_00655 PF00338 Ribosomal protein S10p/S20e LYZ39_00660 PF00297 Ribosomal protein L3 LYZ39_00665 PF00573 Ribosomal protein L4/L1 family LYZ39_00670 PF00276 Ribosomal protein L23 LYZ39_00675 PF00181 Ribosomal Proteins L2, RNA binding domain LYZ39_00675 PF03947 Ribosomal Proteins L2, C-terminal domain LYZ39_00680 PF00203 Ribosomal protein S19 LYZ39_00685 PF00237 Ribosomal protein L22p/L17e LYZ39_00690 PF07650 KH domain LYZ39_00690 PF00189 Ribosomal protein S3, C-terminal domain LYZ39_00695 PF00252 Ribosomal protein L16p/L10e LYZ39_00700 PF00831 Ribosomal L29 protein LYZ39_00705 PF00366 Ribosomal protein S17 LYZ39_00730 PF00005 ABC transporter LYZ39_00735 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_00735 PF00005 ABC transporter LYZ39_00750 PF14525 AraC-binding-like domain LYZ39_00750 PF12833 Helix-turn-helix domain LYZ39_00760 PF00171 Aldehyde dehydrogenase family LYZ39_00770 PF00238 Ribosomal protein L14p/L23e LYZ39_00775 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LYZ39_00780 PF00673 ribosomal L5P family C-terminus LYZ39_00780 PF00281 Ribosomal protein L5 LYZ39_00785 PF00253 Ribosomal protein S14p/S29e LYZ39_00790 PF00410 Ribosomal protein S8 LYZ39_00795 PF00347 Ribosomal protein L6 LYZ39_00800 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LYZ39_00805 PF03719 Ribosomal protein S5, C-terminal domain LYZ39_00805 PF00333 Ribosomal protein S5, N-terminal domain LYZ39_00810 PF00327 Ribosomal protein L30p/L7e LYZ39_00815 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LYZ39_00820 PF00344 SecY translocase LYZ39_00825 PF01176 Translation initiation factor 1A / IF-1 LYZ39_00830 PF00444 Ribosomal protein L36 LYZ39_00835 PF00416 Ribosomal protein S13/S18 LYZ39_00840 PF00411 Ribosomal protein S11 LYZ39_00845 PF00163 Ribosomal protein S4/S9 N-terminal domain LYZ39_00845 PF01479 S4 domain LYZ39_00850 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LYZ39_00850 PF01000 RNA polymerase Rpb3/RpoA insert domain LYZ39_00850 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LYZ39_00855 PF01196 Ribosomal protein L17 LYZ39_00860 PF01230 HIT domain LYZ39_00865 PF03091 CutA1 divalent ion tolerance protein LYZ39_00870 PF11412 Disulphide bond corrector protein DsbC LYZ39_00870 PF02683 Cytochrome C biogenesis protein transmembrane region LYZ39_00880 PF00490 Delta-aminolevulinic acid dehydratase LYZ39_00885 PF01926 50S ribosome-binding GTPase LYZ39_00895 PF05140 ResB-like family LYZ39_00900 PF01578 Cytochrome C assembly protein LYZ39_00905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LYZ39_00905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LYZ39_00915 PF01491 Frataxin-like domain LYZ39_00920 PF17092 Penicillin-binding protein OB-like domain LYZ39_00920 PF00912 Transglycosylase LYZ39_00920 PF00905 Penicillin binding protein transpeptidase domain LYZ39_00925 PF01202 Shikimate kinase LYZ39_00930 PF01761 3-dehydroquinate synthase LYZ39_00935 PF01966 HD domain LYZ39_00935 PF13286 Phosphohydrolase-associated domain LYZ39_00940 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_00940 PF13417 Glutathione S-transferase, N-terminal domain LYZ39_00945 PF17760 UvrA interaction domain LYZ39_00945 PF17755 UvrA DNA-binding domain LYZ39_00950 PF07690 Major Facilitator Superfamily LYZ39_00955 PF00436 Single-strand binding protein family LYZ39_00960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_00960 PF03466 LysR substrate binding domain LYZ39_00965 PF13378 Enolase C-terminal domain-like LYZ39_00995 PF01274 Malate synthase LYZ39_01000 PF00392 Bacterial regulatory proteins, gntR family LYZ39_01000 PF07729 FCD domain LYZ39_01020 PF01040 UbiA prenyltransferase family LYZ39_01025 PF00155 Aminotransferase class I and II LYZ39_01030 PF13185 GAF domain LYZ39_01035 PF00701 Dihydrodipicolinate synthetase family LYZ39_01050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LYZ39_01050 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LYZ39_01075 PF00152 tRNA synthetases class II (D, K and N) LYZ39_01075 PF01336 OB-fold nucleic acid binding domain LYZ39_01075 PF02938 GAD domain LYZ39_01080 PF03372 Endonuclease/Exonuclease/phosphatase family LYZ39_01085 PF13091 PLD-like domain LYZ39_01090 PF00892 EamA-like transporter family LYZ39_01095 PF07690 Major Facilitator Superfamily LYZ39_01105 PF00342 Phosphoglucose isomerase LYZ39_01110 PF00953 Glycosyl transferase family 4 LYZ39_01115 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LYZ39_01120 PF00534 Glycosyl transferases group 1 LYZ39_01120 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LYZ39_01130 PF03309 Type III pantothenate kinase LYZ39_01140 PF02405 Permease MlaE LYZ39_01145 PF00005 ABC transporter LYZ39_01165 PF07943 Penicillin-binding protein 5, C-terminal domain LYZ39_01165 PF00768 D-alanyl-D-alanine carboxypeptidase LYZ39_01170 PF01063 Amino-transferase class IV LYZ39_01175 PF04359 Protein of unknown function (DUF493) LYZ39_01180 PF03099 Biotin/lipoate A/B protein ligase family LYZ39_01195 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LYZ39_01195 PF04055 Radical SAM superfamily LYZ39_01200 PF01061 ABC-2 type transporter LYZ39_01205 PF00005 ABC transporter LYZ39_01220 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LYZ39_01225 PF00535 Glycosyl transferase family 2 LYZ39_01230 PF00534 Glycosyl transferases group 1 LYZ39_01230 PF00535 Glycosyl transferase family 2 LYZ39_01235 PF16363 GDP-mannose 4,6 dehydratase LYZ39_01255 PF01370 NAD dependent epimerase/dehydratase family LYZ39_01300 PF02350 UDP-N-acetylglucosamine 2-epimerase LYZ39_01305 PF02709 N-terminal domain of galactosyltransferase LYZ39_01305 PF00535 Glycosyl transferase family 2 LYZ39_01310 PF00483 Nucleotidyl transferase LYZ39_01315 PF04321 RmlD substrate binding domain LYZ39_01320 PF00535 Glycosyl transferase family 2 LYZ39_01325 PF16363 GDP-mannose 4,6 dehydratase LYZ39_01330 PF01923 Cobalamin adenosyltransferase LYZ39_01340 PF00004 ATPase family associated with various cellular activities (AAA) LYZ39_01340 PF07724 AAA domain (Cdc48 subfamily) LYZ39_01345 PF00227 Proteasome subunit LYZ39_01350 PF01258 Prokaryotic dksA/traR C4-type zinc finger LYZ39_01355 PF02492 CobW/HypB/UreG, nucleotide-binding domain LYZ39_01355 PF07683 Cobalamin synthesis protein cobW C-terminal domain LYZ39_01360 PF01475 Ferric uptake regulator family LYZ39_01370 PF00005 ABC transporter LYZ39_01375 PF00950 ABC 3 transport family LYZ39_01380 PF01297 Zinc-uptake complex component A periplasmic LYZ39_01390 PF03824 High-affinity nickel-transport protein LYZ39_01395 PF02899 Phage integrase, N-terminal SAM-like domain LYZ39_01395 PF00589 Phage integrase family LYZ39_01405 PF01678 Diaminopimelate epimerase LYZ39_01420 PF02773 S-adenosylmethionine synthetase, C-terminal domain LYZ39_01420 PF02772 S-adenosylmethionine synthetase, central domain LYZ39_01420 PF00438 S-adenosylmethionine synthetase, N-terminal domain LYZ39_01425 PF01425 Amidase LYZ39_01430 PF00083 Sugar (and other) transporter LYZ39_01440 PF00005 ABC transporter LYZ39_01450 PF13458 Periplasmic binding protein LYZ39_01465 PF01613 Flavin reductase like domain LYZ39_01470 PF03466 LysR substrate binding domain LYZ39_01470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_01475 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_01480 PF00330 Aconitase family (aconitate hydratase) LYZ39_01485 PF00694 Aconitase C-terminal domain LYZ39_01490 PF00561 alpha/beta hydrolase fold LYZ39_01500 PF13439 Glycosyltransferase Family 4 LYZ39_01500 PF00534 Glycosyl transferases group 1 LYZ39_01505 PF05221 S-adenosyl-L-homocysteine hydrolase LYZ39_01505 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LYZ39_01510 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV LYZ39_01515 PF02219 Methylenetetrahydrofolate reductase LYZ39_01520 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_01540 PF14403 Circularly permuted ATP-grasp type 2 LYZ39_01545 PF01812 5-formyltetrahydrofolate cyclo-ligase family LYZ39_01550 PF14718 Soluble lytic murein transglycosylase L domain LYZ39_01550 PF01464 Transglycosylase SLT domain LYZ39_01555 PF01743 Poly A polymerase head domain LYZ39_01555 PF12627 Probable RNA and SrmB- binding site of polymerase A LYZ39_01565 PF00270 DEAD/DEAH box helicase LYZ39_01565 PF00271 Helicase conserved C-terminal domain LYZ39_01570 PF03167 Uracil DNA glycosylase superfamily LYZ39_01580 PF03070 TENA/THI-4/PQQC family LYZ39_01595 PF04343 Protein of unknown function, DUF488 LYZ39_01600 PF06965 Na+/H+ antiporter 1 LYZ39_01615 PF03976 Polyphosphate kinase 2 (PPK2) LYZ39_01620 PF00753 Metallo-beta-lactamase superfamily LYZ39_01630 PF04143 Sulphur transport LYZ39_01640 PF00501 AMP-binding enzyme LYZ39_01640 PF13193 AMP-binding enzyme C-terminal domain LYZ39_01645 PF00005 ABC transporter LYZ39_01660 PF02653 Branched-chain amino acid transport system / permease component LYZ39_01665 PF00005 ABC transporter LYZ39_01665 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_01670 PF00501 AMP-binding enzyme LYZ39_01680 PF01047 MarR family LYZ39_01685 PF02566 OsmC-like protein LYZ39_01690 PF00005 ABC transporter LYZ39_01695 PF00005 ABC transporter LYZ39_01695 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_01705 PF13458 Periplasmic binding protein LYZ39_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_01710 PF03466 LysR substrate binding domain LYZ39_01720 PF01810 LysE type translocator LYZ39_01725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_01725 PF03466 LysR substrate binding domain LYZ39_01735 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LYZ39_01735 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LYZ39_01740 PF01810 LysE type translocator LYZ39_01745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_01745 PF03466 LysR substrate binding domain LYZ39_01750 PF03372 Endonuclease/Exonuclease/phosphatase family LYZ39_01755 PF00156 Phosphoribosyl transferase domain LYZ39_01770 PF02934 GatB/GatE catalytic domain LYZ39_01770 PF02637 GatB domain LYZ39_01775 PF01425 Amidase LYZ39_01780 PF02686 Glu-tRNAGln amidotransferase C subunit LYZ39_01790 PF04085 rod shape-determining protein MreC LYZ39_01800 PF00905 Penicillin binding protein transpeptidase domain LYZ39_01800 PF03717 Penicillin-binding Protein dimerisation domain LYZ39_01805 PF01098 Cell cycle protein LYZ39_01810 PF02615 Malate/L-lactate dehydrogenase LYZ39_01815 PF00939 Sodium:sulfate symporter transmembrane region LYZ39_01820 PF00440 Bacterial regulatory proteins, tetR family LYZ39_01830 PF00696 Amino acid kinase family LYZ39_01835 PF03180 NLPA lipoprotein LYZ39_01840 PF00578 AhpC/TSA family LYZ39_01845 PF04972 BON domain LYZ39_01850 PF13580 SIS domain LYZ39_01855 PF02021 Uncharacterised protein family UPF0102 LYZ39_01860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LYZ39_01865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LYZ39_01865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LYZ39_01870 PF03330 Lytic transglycolase LYZ39_01870 PF05036 Sporulation related domain LYZ39_01875 PF03668 P-loop ATPase protein family LYZ39_01885 PF00034 Cytochrome c LYZ39_01885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LYZ39_01890 PF00155 Aminotransferase class I and II LYZ39_01890 PF00392 Bacterial regulatory proteins, gntR family LYZ39_01895 PF07475 HPr Serine kinase C-terminal domain LYZ39_01895 PF02603 HPr Serine kinase N terminus LYZ39_01900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LYZ39_01905 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LYZ39_01910 PF00005 ABC transporter LYZ39_01930 PF00571 CBS domain LYZ39_01930 PF01380 SIS domain LYZ39_01935 PF02222 ATP-grasp domain LYZ39_01935 PF01370 NAD dependent epimerase/dehydratase family LYZ39_01945 PF01654 Cytochrome bd terminal oxidase subunit I LYZ39_01950 PF02322 Cytochrome bd terminal oxidase subunit II LYZ39_01955 PF08173 Membrane bound YbgT-like protein LYZ39_01960 PF00664 ABC transporter transmembrane region LYZ39_01960 PF00005 ABC transporter LYZ39_01965 PF00664 ABC transporter transmembrane region LYZ39_01965 PF00005 ABC transporter LYZ39_01970 PF00156 Phosphoribosyl transferase domain LYZ39_01975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_01975 PF03466 LysR substrate binding domain LYZ39_01985 PF13609 Gram-negative porin LYZ39_01990 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_01990 PF00585 C-terminal regulatory domain of Threonine dehydratase LYZ39_01995 PF09335 SNARE associated Golgi protein LYZ39_02005 PF00011 Hsp20/alpha crystallin family LYZ39_02010 PF00011 Hsp20/alpha crystallin family LYZ39_02015 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_02020 PF01168 Alanine racemase, N-terminal domain LYZ39_02025 PF00155 Aminotransferase class I and II LYZ39_02030 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_02040 PF00682 HMGL-like LYZ39_02045 PF02481 DNA recombination-mediator protein A LYZ39_02045 PF17782 DprA winged helix domain LYZ39_02050 PF01327 Polypeptide deformylase LYZ39_02055 PF02911 Formyl transferase, C-terminal domain LYZ39_02055 PF00551 Formyl transferase LYZ39_02065 PF13419 Haloacid dehalogenase-like hydrolase LYZ39_02075 PF03641 Possible lysine decarboxylase LYZ39_02085 PF00919 Uncharacterized protein family UPF0004 LYZ39_02085 PF18693 TRAM domain LYZ39_02085 PF04055 Radical SAM superfamily LYZ39_02090 PF01810 LysE type translocator LYZ39_02095 PF01189 16S rRNA methyltransferase RsmB/F LYZ39_02095 PF01029 NusB family LYZ39_02105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_02105 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_02105 PF00672 HAMP domain LYZ39_02105 PF00989 PAS fold LYZ39_02110 PF02954 Bacterial regulatory protein, Fis family LYZ39_02110 PF00072 Response regulator receiver domain LYZ39_02110 PF00158 Sigma-54 interaction domain LYZ39_02115 PF02080 TrkA-C domain LYZ39_02115 PF02254 TrkA-N domain LYZ39_02120 PF02386 Cation transport protein LYZ39_02125 PF04107 Glutamate-cysteine ligase family 2(GCS2) LYZ39_02130 PF08241 Methyltransferase domain LYZ39_02135 PF00156 Phosphoribosyl transferase domain LYZ39_02140 PF00588 SpoU rRNA Methylase family LYZ39_02145 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_02150 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LYZ39_02150 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LYZ39_02155 PF02556 Preprotein translocase subunit SecB LYZ39_02160 PF00462 Glutaredoxin LYZ39_02165 PF17773 UPF0176 acylphosphatase like domain LYZ39_02165 PF00581 Rhodanese-like domain LYZ39_02165 PF12368 Rhodanase C-terminal LYZ39_02170 PF00300 Histidine phosphatase superfamily (branch 1) LYZ39_02175 PF01551 Peptidase family M23 LYZ39_02180 PF03572 Peptidase family S41 LYZ39_02180 PF13180 PDZ domain LYZ39_02185 PF00899 ThiF family LYZ39_02190 PF00563 EAL domain LYZ39_02190 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_02190 PF03707 Bacterial signalling protein N terminal repeat LYZ39_02195 PF07729 FCD domain LYZ39_02195 PF00392 Bacterial regulatory proteins, gntR family LYZ39_02200 PF02913 FAD linked oxidases, C-terminal domain LYZ39_02200 PF01565 FAD binding domain LYZ39_02205 PF13667 ThiC-associated domain LYZ39_02205 PF01964 Radical SAM ThiC family LYZ39_02210 PF02355 Protein export membrane protein LYZ39_02225 PF00696 Amino acid kinase family LYZ39_02225 PF01472 PUA domain LYZ39_02230 PF01018 GTP1/OBG LYZ39_02230 PF01926 50S ribosome-binding GTPase LYZ39_02235 PF01016 Ribosomal L27 protein LYZ39_02240 PF00829 Ribosomal prokaryotic L21 protein LYZ39_02245 PF01614 Bacterial transcriptional regulator LYZ39_02245 PF09339 IclR helix-turn-helix domain LYZ39_02255 PF00348 Polyprenyl synthetase LYZ39_02275 PF00593 TonB dependent receptor LYZ39_02275 PF07715 TonB-dependent Receptor Plug Domain LYZ39_02320 PF02627 Carboxymuconolactone decarboxylase family LYZ39_02325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_02325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_02330 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_02355 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_02360 PF07690 Major Facilitator Superfamily LYZ39_02365 PF01261 Xylose isomerase-like TIM barrel LYZ39_02370 PF01370 NAD dependent epimerase/dehydratase family LYZ39_02375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_02375 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_02380 PF17042 Nucleotide-binding C-terminal domain LYZ39_02380 PF07005 Sugar-binding N-terminal domain LYZ39_02385 PF07729 FCD domain LYZ39_02385 PF00392 Bacterial regulatory proteins, gntR family LYZ39_02390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_02390 PF03466 LysR substrate binding domain LYZ39_02395 PF07690 Major Facilitator Superfamily LYZ39_02405 PF07715 TonB-dependent Receptor Plug Domain LYZ39_02405 PF00593 TonB dependent receptor LYZ39_02410 PF01261 Xylose isomerase-like TIM barrel LYZ39_02415 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_02425 PF00892 EamA-like transporter family LYZ39_02430 PF01810 LysE type translocator LYZ39_02435 PF01037 Lrp/AsnC ligand binding domain LYZ39_02440 PF00924 Mechanosensitive ion channel LYZ39_02440 PF12795 Mechanosensitive ion channel porin domain LYZ39_02440 PF12794 Mechanosensitive ion channel inner membrane domain 1 LYZ39_02450 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LYZ39_02450 PF01488 Shikimate / quinate 5-dehydrogenase LYZ39_02450 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LYZ39_02455 PF00472 RF-1 domain LYZ39_02455 PF03462 PCRF domain LYZ39_02460 PF17827 PrmC N-terminal domain LYZ39_02460 PF05175 Methyltransferase small domain LYZ39_02465 PF00462 Glutaredoxin LYZ39_02470 PF02441 Flavoprotein LYZ39_02480 PF03180 NLPA lipoprotein LYZ39_02485 PF03079 ARD/ARD' family LYZ39_02500 PF13193 AMP-binding enzyme C-terminal domain LYZ39_02500 PF00501 AMP-binding enzyme LYZ39_02505 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_02520 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LYZ39_02520 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LYZ39_02530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_02530 PF03466 LysR substrate binding domain LYZ39_02545 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_02545 PF13417 Glutathione S-transferase, N-terminal domain LYZ39_02550 PF00484 Carbonic anhydrase LYZ39_02570 PF12146 Serine aminopeptidase, S33 LYZ39_02580 PF02426 Muconolactone delta-isomerase LYZ39_02585 PF01144 Coenzyme A transferase LYZ39_02590 PF01144 Coenzyme A transferase LYZ39_02595 PF01614 Bacterial transcriptional regulator LYZ39_02595 PF09339 IclR helix-turn-helix domain LYZ39_02605 PF02667 Short chain fatty acid transporter LYZ39_02610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_02610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_02620 PF00311 Phosphoenolpyruvate carboxylase LYZ39_02625 PF06508 Queuosine biosynthesis protein QueC LYZ39_02640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_02640 PF03466 LysR substrate binding domain LYZ39_02650 PF00920 Dehydratase family LYZ39_02655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_02655 PF03466 LysR substrate binding domain LYZ39_02660 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_02660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LYZ39_02665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LYZ39_02665 PF00364 Biotin-requiring enzyme LYZ39_02665 PF02817 e3 binding domain LYZ39_02675 PF00676 Dehydrogenase E1 component LYZ39_02685 PF00005 ABC transporter LYZ39_02690 PF00005 ABC transporter LYZ39_02690 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_02700 PF02653 Branched-chain amino acid transport system / permease component LYZ39_02705 PF13458 Periplasmic binding protein LYZ39_02715 PF00392 Bacterial regulatory proteins, gntR family LYZ39_02715 PF07729 FCD domain LYZ39_02720 PF00742 Homoserine dehydrogenase LYZ39_02720 PF03447 Homoserine dehydrogenase, NAD binding domain LYZ39_02720 PF01842 ACT domain LYZ39_02725 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) LYZ39_02740 PF03975 CheD chemotactic sensory transduction LYZ39_02745 PF18075 FtsX extracellular domain LYZ39_02750 PF00005 ABC transporter LYZ39_02755 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_02760 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_02765 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_02770 PF00005 ABC transporter LYZ39_02775 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_02785 PF00005 ABC transporter LYZ39_02790 PF00005 ABC transporter LYZ39_02795 PF02653 Branched-chain amino acid transport system / permease component LYZ39_02795 PF11862 Domain of unknown function (DUF3382) LYZ39_02800 PF02653 Branched-chain amino acid transport system / permease component LYZ39_02810 PF01494 FAD binding domain LYZ39_02820 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_02825 PF00800 Prephenate dehydratase LYZ39_02825 PF01842 ACT domain LYZ39_02825 PF01817 Chorismate mutase type II LYZ39_02830 PF13417 Glutathione S-transferase, N-terminal domain LYZ39_02835 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_02840 PF07883 Cupin domain LYZ39_02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_02845 PF03466 LysR substrate binding domain LYZ39_02855 PF02321 Outer membrane efflux protein LYZ39_02860 PF00873 AcrB/AcrD/AcrF family LYZ39_02865 PF13533 Biotin-lipoyl like LYZ39_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_02870 PF03466 LysR substrate binding domain LYZ39_02875 PF01594 AI-2E family transporter LYZ39_02890 PF00701 Dihydrodipicolinate synthetase family LYZ39_02895 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_02900 PF08402 TOBE domain LYZ39_02900 PF00005 ABC transporter LYZ39_02910 PF02913 FAD linked oxidases, C-terminal domain LYZ39_02910 PF01565 FAD binding domain LYZ39_02915 PF01070 FMN-dependent dehydrogenase LYZ39_02920 PF03807 NADP oxidoreductase coenzyme F420-dependent LYZ39_02920 PF14748 Pyrroline-5-carboxylate reductase dimerisation LYZ39_02925 PF07690 Major Facilitator Superfamily LYZ39_02940 PF03551 Transcriptional regulator PadR-like family LYZ39_02945 PF08021 Siderophore-interacting FAD-binding domain LYZ39_02945 PF04954 Siderophore-interacting protein LYZ39_02950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_02950 PF03466 LysR substrate binding domain LYZ39_02970 PF08281 Sigma-70, region 4 LYZ39_02970 PF04542 Sigma-70 region 2 LYZ39_02975 PF00486 Transcriptional regulatory protein, C terminal LYZ39_02975 PF00072 Response regulator receiver domain LYZ39_02980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_02980 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_03030 PF05853 beta-keto acid cleavage enzyme LYZ39_03035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LYZ39_03035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LYZ39_03040 PF02653 Branched-chain amino acid transport system / permease component LYZ39_03050 PF00005 ABC transporter LYZ39_03055 PF05698 Bacterial trigger factor protein (TF) C-terminus LYZ39_03075 PF01850 PIN domain LYZ39_03085 PF00355 Rieske [2Fe-2S] domain LYZ39_03085 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LYZ39_03095 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03100 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_03100 PF14759 Reductase C-terminal LYZ39_03105 PF00111 2Fe-2S iron-sulfur cluster binding domain LYZ39_03115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LYZ39_03115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_03120 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03125 PF00580 UvrD/REP helicase N-terminal domain LYZ39_03125 PF13361 UvrD-like helicase C-terminal domain LYZ39_03130 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03140 PF03466 LysR substrate binding domain LYZ39_03145 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03150 PF07969 Amidohydrolase family LYZ39_03155 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03160 PF03466 LysR substrate binding domain LYZ39_03160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03165 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_03170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_03175 PF00155 Aminotransferase class I and II LYZ39_03180 PF03466 LysR substrate binding domain LYZ39_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03185 PF01979 Amidohydrolase family LYZ39_03190 PF07690 Major Facilitator Superfamily LYZ39_03200 PF00892 EamA-like transporter family LYZ39_03260 PF07996 Type IV secretion system proteins LYZ39_03290 PF00149 Calcineurin-like phosphoesterase LYZ39_03315 PF00589 Phage integrase family LYZ39_03325 PF00860 Permease family LYZ39_03330 PF00183 Hsp90 protein LYZ39_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_03335 PF07690 Major Facilitator Superfamily LYZ39_03345 PF00449 Urease alpha-subunit, N-terminal domain LYZ39_03345 PF01979 Amidohydrolase family LYZ39_03350 PF01979 Amidohydrolase family LYZ39_03355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_03360 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_03365 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_03370 PF00005 ABC transporter LYZ39_03370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_03395 PF00072 Response regulator receiver domain LYZ39_03395 PF00486 Transcriptional regulatory protein, C terminal LYZ39_03405 PF07690 Major Facilitator Superfamily LYZ39_03410 PF13378 Enolase C-terminal domain-like LYZ39_03410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LYZ39_03415 PF01081 KDPG and KHG aldolase LYZ39_03420 PF05035 2-keto-3-deoxy-galactonokinase LYZ39_03425 PF01614 Bacterial transcriptional regulator LYZ39_03425 PF09339 IclR helix-turn-helix domain LYZ39_03430 PF13417 Glutathione S-transferase, N-terminal domain LYZ39_03430 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_03435 PF01510 N-acetylmuramoyl-L-alanine amidase LYZ39_03445 PF01578 Cytochrome C assembly protein LYZ39_03450 PF02881 SRP54-type protein, helical bundle domain LYZ39_03450 PF02978 Signal peptide binding domain LYZ39_03450 PF00448 SRP54-type protein, GTPase domain LYZ39_03455 PF04972 BON domain LYZ39_03455 PF01476 LysM domain LYZ39_03465 PF02597 ThiS family LYZ39_03465 PF05690 Thiazole biosynthesis protein ThiG LYZ39_03470 PF00561 alpha/beta hydrolase fold LYZ39_03475 PF02390 Putative methyltransferase LYZ39_03480 PF03466 LysR substrate binding domain LYZ39_03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03485 PF02515 CoA-transferase family III LYZ39_03490 PF00682 HMGL-like LYZ39_03495 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03520 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_03530 PF00083 Sugar (and other) transporter LYZ39_03530 PF07690 Major Facilitator Superfamily LYZ39_03535 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_03535 PF13417 Glutathione S-transferase, N-terminal domain LYZ39_03555 PF00005 ABC transporter LYZ39_03555 PF00664 ABC transporter transmembrane region LYZ39_03565 PF00180 Isocitrate/isopropylmalate dehydrogenase LYZ39_03575 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03580 PF07729 FCD domain LYZ39_03580 PF00392 Bacterial regulatory proteins, gntR family LYZ39_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03585 PF03466 LysR substrate binding domain LYZ39_03590 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03595 PF01425 Amidase LYZ39_03600 PF01047 MarR family LYZ39_03600 PF00583 Acetyltransferase (GNAT) family LYZ39_03620 PF05853 beta-keto acid cleavage enzyme LYZ39_03635 PF04773 FecR protein LYZ39_03635 PF16220 Domain of unknown function (DUF4880) LYZ39_03645 PF07715 TonB-dependent Receptor Plug Domain LYZ39_03645 PF00593 TonB dependent receptor LYZ39_03650 PF00701 Dihydrodipicolinate synthetase family LYZ39_03655 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03660 PF03466 LysR substrate binding domain LYZ39_03665 PF00392 Bacterial regulatory proteins, gntR family LYZ39_03665 PF00155 Aminotransferase class I and II LYZ39_03670 PF00464 Serine hydroxymethyltransferase LYZ39_03675 PF03594 Benzoate membrane transport protein LYZ39_03680 PF01168 Alanine racemase, N-terminal domain LYZ39_03695 PF00005 ABC transporter LYZ39_03725 PF04397 LytTr DNA-binding domain LYZ39_03725 PF00072 Response regulator receiver domain LYZ39_03730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_03730 PF06580 Histidine kinase LYZ39_03740 PF00890 FAD binding domain LYZ39_03740 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LYZ39_03750 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03755 PF08546 Ketopantoate reductase PanE/ApbA C terminal LYZ39_03755 PF02558 Ketopantoate reductase PanE/ApbA LYZ39_03760 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_03765 PF13193 AMP-binding enzyme C-terminal domain LYZ39_03765 PF00501 AMP-binding enzyme LYZ39_03770 PF03466 LysR substrate binding domain LYZ39_03770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03775 PF00486 Transcriptional regulatory protein, C terminal LYZ39_03775 PF00072 Response regulator receiver domain LYZ39_03780 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_03780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_03790 PF14698 Argininosuccinate lyase C-terminal LYZ39_03790 PF00206 Lyase LYZ39_03795 PF03466 LysR substrate binding domain LYZ39_03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03800 PF07690 Major Facilitator Superfamily LYZ39_03805 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03810 PF02515 CoA-transferase family III LYZ39_03820 PF00501 AMP-binding enzyme LYZ39_03820 PF13193 AMP-binding enzyme C-terminal domain LYZ39_03845 PF04303 PrpF protein LYZ39_03850 PF00330 Aconitase family (aconitate hydratase) LYZ39_03850 PF00694 Aconitase C-terminal domain LYZ39_03865 PF01590 GAF domain LYZ39_03865 PF02954 Bacterial regulatory protein, Fis family LYZ39_03865 PF00158 Sigma-54 interaction domain LYZ39_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03875 PF03466 LysR substrate binding domain LYZ39_03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_03885 PF03466 LysR substrate binding domain LYZ39_03890 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03895 PF00330 Aconitase family (aconitate hydratase) LYZ39_03900 PF03737 Aldolase/RraA LYZ39_03905 PF00753 Metallo-beta-lactamase superfamily LYZ39_03910 PF00005 ABC transporter LYZ39_03930 PF02653 Branched-chain amino acid transport system / permease component LYZ39_03940 PF00005 ABC transporter LYZ39_03945 PF00005 ABC transporter LYZ39_03950 PF00171 Aldehyde dehydrogenase family LYZ39_03960 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_03960 PF00107 Zinc-binding dehydrogenase LYZ39_03970 PF00067 Cytochrome P450 LYZ39_03975 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_03995 PF01313 Bacterial export proteins, family 3 LYZ39_04000 PF01311 Bacterial export proteins, family 1 LYZ39_04005 PF01312 FlhB HrpN YscU SpaS Family LYZ39_04010 PF00771 FHIPEP family LYZ39_04015 PF00460 Flagella basal body rod protein LYZ39_04015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_04020 PF00460 Flagella basal body rod protein LYZ39_04020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_04030 PF02107 Flagellar L-ring protein LYZ39_04035 PF02119 Flagellar P-ring protein LYZ39_04045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_04045 PF00460 Flagella basal body rod protein LYZ39_04050 PF02049 Flagellar hook-basal body complex protein FliE LYZ39_04055 PF08345 Flagellar M-ring protein C-terminal LYZ39_04055 PF01514 Secretory protein of YscJ/FliF family LYZ39_04065 PF02108 Flagellar assembly protein FliH LYZ39_04070 PF02874 ATP synthase alpha/beta family, beta-barrel domain LYZ39_04070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LYZ39_04070 PF18269 T3SS EscN ATPase C-terminal domain LYZ39_04085 PF03963 Flagellar hook capping protein - N-terminal region LYZ39_04090 PF07559 Flagellar basal body protein FlaE LYZ39_04090 PF00460 Flagella basal body rod protein LYZ39_04090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_04100 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LYZ39_04110 PF00813 FliP family LYZ39_04180 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family LYZ39_04190 PF02566 OsmC-like protein LYZ39_04195 PF01048 Phosphorylase superfamily LYZ39_04200 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_04200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_04200 PF00672 HAMP domain LYZ39_04205 PF00486 Transcriptional regulatory protein, C terminal LYZ39_04205 PF00072 Response regulator receiver domain LYZ39_04210 PF00578 AhpC/TSA family LYZ39_04210 PF17991 Thioredoxin like C-terminal domain LYZ39_04210 PF02683 Cytochrome C biogenesis protein transmembrane region LYZ39_04215 PF00578 AhpC/TSA family LYZ39_04215 PF02683 Cytochrome C biogenesis protein transmembrane region LYZ39_04215 PF17991 Thioredoxin like C-terminal domain LYZ39_04240 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_04240 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_04245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_04245 PF03466 LysR substrate binding domain LYZ39_04250 PF00890 FAD binding domain LYZ39_04250 PF04205 FMN-binding domain LYZ39_04250 PF03358 NADPH-dependent FMN reductase LYZ39_04260 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_04270 PF00392 Bacterial regulatory proteins, gntR family LYZ39_04270 PF00155 Aminotransferase class I and II LYZ39_04280 PF02322 Cytochrome bd terminal oxidase subunit II LYZ39_04285 PF01654 Cytochrome bd terminal oxidase subunit I LYZ39_04290 PF00892 EamA-like transporter family LYZ39_04295 PF00881 Nitroreductase family LYZ39_04300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_04300 PF03466 LysR substrate binding domain LYZ39_04320 PF00005 ABC transporter LYZ39_04325 PF13533 Biotin-lipoyl like LYZ39_04330 PF02321 Outer membrane efflux protein LYZ39_04335 PF00440 Bacterial regulatory proteins, tetR family LYZ39_04340 PF07885 Ion channel LYZ39_04340 PF02254 TrkA-N domain LYZ39_04355 PF01757 Acyltransferase family LYZ39_04370 PF00581 Rhodanese-like domain LYZ39_04370 PF17773 UPF0176 acylphosphatase like domain LYZ39_04375 PF09334 tRNA synthetases class I (M) LYZ39_04375 PF01588 Putative tRNA binding domain LYZ39_04385 PF10609 NUBPL iron-transfer P-loop NTPase LYZ39_04400 PF00692 dUTPase LYZ39_04410 PF17151 Periplasmic sensor domain LYZ39_04410 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_04415 PF00583 Acetyltransferase (GNAT) family LYZ39_04425 PF01276 Orn/Lys/Arg decarboxylase, major domain LYZ39_04425 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LYZ39_04425 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LYZ39_04435 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LYZ39_04435 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LYZ39_04440 PF02535 ZIP Zinc transporter LYZ39_04445 PF01571 Aminomethyltransferase folate-binding domain LYZ39_04445 PF08669 Glycine cleavage T-protein C-terminal barrel domain LYZ39_04450 PF01597 Glycine cleavage H-protein LYZ39_04455 PF02347 Glycine cleavage system P-protein LYZ39_04470 PF01425 Amidase LYZ39_04475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_04475 PF00005 ABC transporter LYZ39_04480 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_04485 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_04500 PF00171 Aldehyde dehydrogenase family LYZ39_04505 PF00202 Aminotransferase class-III LYZ39_04510 PF00155 Aminotransferase class I and II LYZ39_04515 PF00186 Dihydrofolate reductase LYZ39_04520 PF00563 EAL domain LYZ39_04520 PF03707 Bacterial signalling protein N terminal repeat LYZ39_04520 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_04525 PF00303 Thymidylate synthase LYZ39_04535 PF03232 Ubiquinone biosynthesis protein COQ7 LYZ39_04540 PF00953 Glycosyl transferase family 4 LYZ39_04545 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LYZ39_04545 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LYZ39_04545 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LYZ39_04550 PF01370 NAD dependent epimerase/dehydratase family LYZ39_04555 PF03023 Lipid II flippase MurJ LYZ39_04560 PF13439 Glycosyltransferase Family 4 LYZ39_04560 PF00534 Glycosyl transferases group 1 LYZ39_04565 PF00733 Asparagine synthase LYZ39_04565 PF13537 Glutamine amidotransferase domain LYZ39_04570 PF00534 Glycosyl transferases group 1 LYZ39_04570 PF13439 Glycosyltransferase Family 4 LYZ39_04575 PF13439 Glycosyltransferase Family 4 LYZ39_04575 PF00534 Glycosyl transferases group 1 LYZ39_04585 PF00342 Phosphoglucose isomerase LYZ39_04590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LYZ39_04590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LYZ39_04590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LYZ39_04590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LYZ39_04600 PF02913 FAD linked oxidases, C-terminal domain LYZ39_04600 PF01565 FAD binding domain LYZ39_04605 PF00072 Response regulator receiver domain LYZ39_04605 PF00486 Transcriptional regulatory protein, C terminal LYZ39_04610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_04610 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_04620 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_04620 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LYZ39_04630 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_04635 PF08450 SMP-30/Gluconolactonase/LRE-like region LYZ39_04640 PF01370 NAD dependent epimerase/dehydratase family LYZ39_04645 PF07729 FCD domain LYZ39_04645 PF00392 Bacterial regulatory proteins, gntR family LYZ39_04650 PF00884 Sulfatase LYZ39_04655 PF01553 Acyltransferase LYZ39_04665 PF04209 homogentisate 1,2-dioxygenase LYZ39_04670 PF03466 LysR substrate binding domain LYZ39_04670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_04680 PF01494 FAD binding domain LYZ39_04690 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LYZ39_04690 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LYZ39_04690 PF06827 Zinc finger found in FPG and IleRS LYZ39_04700 PF03550 Outer membrane lipoprotein LolB LYZ39_04705 PF00672 HAMP domain LYZ39_04705 PF02203 Tar ligand binding domain homologue LYZ39_04705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_04710 PF00288 GHMP kinases N terminal domain LYZ39_04710 PF08544 GHMP kinases C terminal LYZ39_04720 PF14572 Phosphoribosyl synthetase-associated domain LYZ39_04720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LYZ39_04725 PF01386 Ribosomal L25p family LYZ39_04725 PF14693 Ribosomal protein TL5, C-terminal domain LYZ39_04730 PF01195 Peptidyl-tRNA hydrolase LYZ39_04740 PF06071 Protein of unknown function (DUF933) LYZ39_04740 PF01926 50S ribosome-binding GTPase LYZ39_04745 PF00356 Bacterial regulatory proteins, lacI family LYZ39_04750 PF01370 NAD dependent epimerase/dehydratase family LYZ39_04755 PF17912 MalK OB fold domain LYZ39_04755 PF00005 ABC transporter LYZ39_04765 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_04770 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_04775 PF03466 LysR substrate binding domain LYZ39_04785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_04785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_04790 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_04800 PF09339 IclR helix-turn-helix domain LYZ39_04800 PF01614 Bacterial transcriptional regulator LYZ39_04810 PF07690 Major Facilitator Superfamily LYZ39_04825 PF03594 Benzoate membrane transport protein LYZ39_04830 PF00037 4Fe-4S binding domain LYZ39_04835 PF01467 Cytidylyltransferase-like LYZ39_04845 PF02881 SRP54-type protein, helical bundle domain LYZ39_04845 PF00448 SRP54-type protein, GTPase domain LYZ39_04855 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_04860 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_04865 PF00005 ABC transporter LYZ39_04885 PF00925 GTP cyclohydrolase II LYZ39_04885 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LYZ39_04890 PF00885 6,7-dimethyl-8-ribityllumazine synthase LYZ39_04895 PF01029 NusB family LYZ39_04900 PF00586 AIR synthase related protein, N-terminal domain LYZ39_04900 PF02769 AIR synthase related protein, C-terminal domain LYZ39_04905 PF04608 Phosphatidylglycerophosphatase A LYZ39_04910 PF02464 Competence-damaged protein LYZ39_04915 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LYZ39_04920 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_04925 PF01219 Prokaryotic diacylglycerol kinase LYZ39_04930 PF07729 FCD domain LYZ39_04930 PF00392 Bacterial regulatory proteins, gntR family LYZ39_04935 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_04945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_04955 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_04960 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LYZ39_04960 PF08666 SAF domain LYZ39_04965 PF08125 Mannitol dehydrogenase C-terminal domain LYZ39_04965 PF01232 Mannitol dehydrogenase Rossmann domain LYZ39_04970 PF02615 Malate/L-lactate dehydrogenase LYZ39_04975 PF00005 ABC transporter LYZ39_04980 PF00005 ABC transporter LYZ39_04980 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_04985 PF02653 Branched-chain amino acid transport system / permease component LYZ39_04985 PF11862 Domain of unknown function (DUF3382) LYZ39_04990 PF02653 Branched-chain amino acid transport system / permease component LYZ39_05005 PF06052 3-hydroxyanthranilic acid dioxygenase LYZ39_05010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05010 PF03466 LysR substrate binding domain LYZ39_05015 PF01042 Endoribonuclease L-PSP LYZ39_05020 PF00171 Aldehyde dehydrogenase family LYZ39_05025 PF01047 MarR family LYZ39_05035 PF00118 TCP-1/cpn60 chaperonin family LYZ39_05040 PF00166 Chaperonin 10 Kd subunit LYZ39_05065 PF03797 Autotransporter beta-domain LYZ39_05070 PF07715 TonB-dependent Receptor Plug Domain LYZ39_05070 PF07660 Secretin and TonB N terminus short domain LYZ39_05070 PF00593 TonB dependent receptor LYZ39_05085 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_05085 PF17158 Membrane-associated sensor, integral membrane domain LYZ39_05095 PF04542 Sigma-70 region 2 LYZ39_05095 PF08281 Sigma-70, region 4 LYZ39_05100 PF16220 Domain of unknown function (DUF4880) LYZ39_05100 PF04773 FecR protein LYZ39_05105 PF00593 TonB dependent receptor LYZ39_05105 PF07715 TonB-dependent Receptor Plug Domain LYZ39_05110 PF05506 Domain of unknown function (DUF756) LYZ39_05110 PF04185 Phosphoesterase family LYZ39_05120 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_05125 PF00005 ABC transporter LYZ39_05135 PF13344 Haloacid dehalogenase-like hydrolase LYZ39_05140 PF01418 Helix-turn-helix domain, rpiR family LYZ39_05140 PF01380 SIS domain LYZ39_05145 PF12833 Helix-turn-helix domain LYZ39_05160 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05165 PF05853 beta-keto acid cleavage enzyme LYZ39_05170 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05180 PF00561 alpha/beta hydrolase fold LYZ39_05200 PF03466 LysR substrate binding domain LYZ39_05200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05210 PF07683 Cobalamin synthesis protein cobW C-terminal domain LYZ39_05210 PF02492 CobW/HypB/UreG, nucleotide-binding domain LYZ39_05215 PF00857 Isochorismatase family LYZ39_05220 PF01979 Amidohydrolase family LYZ39_05225 PF00330 Aconitase family (aconitate hydratase) LYZ39_05225 PF00694 Aconitase C-terminal domain LYZ39_05230 PF07729 FCD domain LYZ39_05230 PF00392 Bacterial regulatory proteins, gntR family LYZ39_05250 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_05265 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_05265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_05270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_05270 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_05270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_05275 PF01144 Coenzyme A transferase LYZ39_05280 PF01144 Coenzyme A transferase LYZ39_05285 PF01575 MaoC like domain LYZ39_05290 PF00106 short chain dehydrogenase LYZ39_05295 PF02803 Thiolase, C-terminal domain LYZ39_05295 PF00108 Thiolase, N-terminal domain LYZ39_05305 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05310 PF03466 LysR substrate binding domain LYZ39_05315 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_05320 PF02515 CoA-transferase family III LYZ39_05325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05325 PF03466 LysR substrate binding domain LYZ39_05330 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05340 PF07690 Major Facilitator Superfamily LYZ39_05345 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05350 PF08666 SAF domain LYZ39_05350 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LYZ39_05355 PF03466 LysR substrate binding domain LYZ39_05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05370 PF07691 PA14 domain LYZ39_05370 PF12791 Anti-sigma factor N-terminus LYZ39_05425 PF17758 Proteasomal ATPase OB N-terminal domain LYZ39_05425 PF16450 Proteasomal ATPase OB C-terminal domain LYZ39_05425 PF00004 ATPase family associated with various cellular activities (AAA) LYZ39_05475 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05490 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_05490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_05490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_05495 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05500 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05505 PF03466 LysR substrate binding domain LYZ39_05505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_05510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_05510 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_05515 PF13085 2Fe-2S iron-sulfur cluster binding domain LYZ39_05515 PF13183 4Fe-4S dicluster domain LYZ39_05530 PF02910 Fumarate reductase flavoprotein C-term LYZ39_05530 PF00890 FAD binding domain LYZ39_05535 PF05683 Fumarase C-terminus LYZ39_05535 PF05681 Fumarate hydratase (Fumerase) LYZ39_05550 PF03466 LysR substrate binding domain LYZ39_05550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05555 PF01070 FMN-dependent dehydrogenase LYZ39_05560 PF03737 Aldolase/RraA LYZ39_05565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05565 PF03466 LysR substrate binding domain LYZ39_05570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_05570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_05595 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_05620 PF01494 FAD binding domain LYZ39_05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05630 PF03466 LysR substrate binding domain LYZ39_05635 PF00180 Isocitrate/isopropylmalate dehydrogenase LYZ39_05640 PF13492 GAF domain LYZ39_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_05640 PF07730 Histidine kinase LYZ39_05645 PF00072 Response regulator receiver domain LYZ39_05645 PF00196 Bacterial regulatory proteins, luxR family LYZ39_05650 PF17755 UvrA DNA-binding domain LYZ39_05655 PF00583 Acetyltransferase (GNAT) family LYZ39_05655 PF13673 Acetyltransferase (GNAT) domain LYZ39_05665 PF00248 Aldo/keto reductase family LYZ39_05675 PF13419 Haloacid dehalogenase-like hydrolase LYZ39_05690 PF03352 Methyladenine glycosylase LYZ39_05710 PF00196 Bacterial regulatory proteins, luxR family LYZ39_05710 PF00072 Response regulator receiver domain LYZ39_05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_05715 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_05715 PF09456 RcsC Alpha-Beta-Loop (ABL) LYZ39_05715 PF00072 Response regulator receiver domain LYZ39_05735 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_05745 PF03466 LysR substrate binding domain LYZ39_05745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05765 PF13609 Gram-negative porin LYZ39_05770 PF02104 SURF1 family LYZ39_05775 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LYZ39_05780 PF00510 Cytochrome c oxidase subunit III LYZ39_05785 PF00115 Cytochrome C and Quinol oxidase polypeptide I LYZ39_05790 PF06481 COX Aromatic Rich Motif LYZ39_05790 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LYZ39_05795 PF00083 Sugar (and other) transporter LYZ39_05795 PF07690 Major Facilitator Superfamily LYZ39_05800 PF00850 Histone deacetylase domain LYZ39_05820 PF00593 TonB dependent receptor LYZ39_05820 PF07715 TonB-dependent Receptor Plug Domain LYZ39_05845 PF03466 LysR substrate binding domain LYZ39_05845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_05850 PF03741 Integral membrane protein TerC family LYZ39_05870 PF07715 TonB-dependent Receptor Plug Domain LYZ39_05870 PF00593 TonB dependent receptor LYZ39_05875 PF12833 Helix-turn-helix domain LYZ39_05875 PF02311 AraC-like ligand binding domain LYZ39_05880 PF07690 Major Facilitator Superfamily LYZ39_05890 PF01447 Thermolysin metallopeptidase, catalytic domain LYZ39_05890 PF02868 Thermolysin metallopeptidase, alpha-helical domain LYZ39_05890 PF16485 Protealysin propeptide LYZ39_05900 PF01145 SPFH domain / Band 7 family LYZ39_05905 PF02378 Phosphotransferase system, EIIC LYZ39_05925 PF07715 TonB-dependent Receptor Plug Domain LYZ39_05925 PF00593 TonB dependent receptor LYZ39_05935 PF04773 FecR protein LYZ39_05935 PF16220 Domain of unknown function (DUF4880) LYZ39_05940 PF07660 Secretin and TonB N terminus short domain LYZ39_05940 PF07715 TonB-dependent Receptor Plug Domain LYZ39_05940 PF00593 TonB dependent receptor LYZ39_05945 PF13426 PAS domain LYZ39_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_05945 PF00072 Response regulator receiver domain LYZ39_05950 PF04542 Sigma-70 region 2 LYZ39_05950 PF08281 Sigma-70, region 4 LYZ39_05955 PF04773 FecR protein LYZ39_05955 PF16220 Domain of unknown function (DUF4880) LYZ39_05960 PF00593 TonB dependent receptor LYZ39_05960 PF07715 TonB-dependent Receptor Plug Domain LYZ39_05965 PF10282 Lactonase, 7-bladed beta-propeller LYZ39_05975 PF00330 Aconitase family (aconitate hydratase) LYZ39_05975 PF00694 Aconitase C-terminal domain LYZ39_05980 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_05985 PF00440 Bacterial regulatory proteins, tetR family LYZ39_05995 PF00561 alpha/beta hydrolase fold LYZ39_06000 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA LYZ39_06005 PF13419 Haloacid dehalogenase-like hydrolase LYZ39_06015 PF01137 RNA 3'-terminal phosphate cyclase LYZ39_06015 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain LYZ39_06020 PF01139 tRNA-splicing ligase RtcB LYZ39_06025 PF06956 Regulator of RNA terminal phosphate cyclase LYZ39_06025 PF00158 Sigma-54 interaction domain LYZ39_06030 PF02308 MgtC family LYZ39_06070 PF13532 2OG-Fe(II) oxygenase superfamily LYZ39_06075 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA LYZ39_06080 PF13091 PLD-like domain LYZ39_06085 PF08671 Anti-repressor SinI LYZ39_06085 PF01381 Helix-turn-helix LYZ39_06105 PF03466 LysR substrate binding domain LYZ39_06105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_06115 PF00106 short chain dehydrogenase LYZ39_06130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_06130 PF03466 LysR substrate binding domain LYZ39_06145 PF00892 EamA-like transporter family LYZ39_06165 PF00689 Cation transporting ATPase, C-terminus LYZ39_06165 PF00690 Cation transporter/ATPase, N-terminus LYZ39_06175 PF00390 Malic enzyme, N-terminal domain LYZ39_06175 PF03949 Malic enzyme, NAD binding domain LYZ39_06175 PF01515 Phosphate acetyl/butaryl transferase LYZ39_06190 PF04072 Leucine carboxyl methyltransferase LYZ39_06195 PF04102 SlyX LYZ39_06200 PF00593 TonB dependent receptor LYZ39_06200 PF07715 TonB-dependent Receptor Plug Domain LYZ39_06205 PF04891 NifQ LYZ39_06215 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LYZ39_06220 PF00510 Cytochrome c oxidase subunit III LYZ39_06225 PF00115 Cytochrome C and Quinol oxidase polypeptide I LYZ39_06230 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LYZ39_06230 PF06481 COX Aromatic Rich Motif LYZ39_06235 PF00072 Response regulator receiver domain LYZ39_06240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_06240 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_06255 PF02630 SCO1/SenC LYZ39_06265 PF01551 Peptidase family M23 LYZ39_06265 PF01476 LysM domain LYZ39_06270 PF00005 ABC transporter LYZ39_06275 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_06280 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_06285 PF03576 Peptidase family S58 LYZ39_06290 PF03006 Haemolysin-III related LYZ39_06295 PF01037 Lrp/AsnC ligand binding domain LYZ39_06300 PF00266 Aminotransferase class-V LYZ39_06305 PF00324 Amino acid permease LYZ39_06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_06310 PF03466 LysR substrate binding domain LYZ39_06325 PF13280 WYL domain LYZ39_06325 PF08279 HTH domain LYZ39_06340 PF08281 Sigma-70, region 4 LYZ39_06340 PF04542 Sigma-70 region 2 LYZ39_06345 PF04773 FecR protein LYZ39_06345 PF16220 Domain of unknown function (DUF4880) LYZ39_06350 PF07715 TonB-dependent Receptor Plug Domain LYZ39_06350 PF00593 TonB dependent receptor LYZ39_06350 PF04886 PT repeat LYZ39_06355 PF05171 Haemin-degrading HemS.ChuX domain LYZ39_06360 PF01497 Periplasmic binding protein LYZ39_06365 PF01032 FecCD transport family LYZ39_06370 PF00005 ABC transporter LYZ39_06375 PF04461 Protein of unknown function (DUF520) LYZ39_06380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_06380 PF03466 LysR substrate binding domain LYZ39_06385 PF02805 Metal binding domain of Ada LYZ39_06385 PF06029 AlkA N-terminal domain LYZ39_06385 PF00730 HhH-GPD superfamily base excision DNA repair protein LYZ39_06385 PF12833 Helix-turn-helix domain LYZ39_06390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LYZ39_06390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LYZ39_06395 PF00180 Isocitrate/isopropylmalate dehydrogenase LYZ39_06400 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_06405 PF01569 PAP2 superfamily LYZ39_06410 PF03960 ArsC family LYZ39_06425 PF00005 ABC transporter LYZ39_06430 PF00005 ABC transporter LYZ39_06430 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_06440 PF02653 Branched-chain amino acid transport system / permease component LYZ39_06450 PF01425 Amidase LYZ39_06455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LYZ39_06455 PF00364 Biotin-requiring enzyme LYZ39_06455 PF00289 Biotin carboxylase, N-terminal domain LYZ39_06455 PF02785 Biotin carboxylase C-terminal domain LYZ39_06455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LYZ39_06455 PF00364 Biotin-requiring enzyme LYZ39_06455 PF00289 Biotin carboxylase, N-terminal domain LYZ39_06455 PF02785 Biotin carboxylase C-terminal domain LYZ39_06460 PF00392 Bacterial regulatory proteins, gntR family LYZ39_06460 PF07729 FCD domain LYZ39_06470 PF08281 Sigma-70, region 4 LYZ39_06470 PF04542 Sigma-70 region 2 LYZ39_06480 PF00583 Acetyltransferase (GNAT) family LYZ39_06500 PF07995 Glucose / Sorbosone dehydrogenase LYZ39_06510 PF00582 Universal stress protein family LYZ39_06515 PF01177 Asp/Glu/Hydantoin racemase LYZ39_06520 PF03466 LysR substrate binding domain LYZ39_06520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_06540 PF07715 TonB-dependent Receptor Plug Domain LYZ39_06540 PF00593 TonB dependent receptor LYZ39_06545 PF04773 FecR protein LYZ39_06545 PF16220 Domain of unknown function (DUF4880) LYZ39_06555 PF13018 Extended Signal Peptide of Type V secretion system LYZ39_06555 PF03797 Autotransporter beta-domain LYZ39_06555 PF16168 Adhesin of bacterial autotransporter system, probable stalk LYZ39_06565 PF05175 Methyltransferase small domain LYZ39_06570 PF07690 Major Facilitator Superfamily LYZ39_06580 PF02634 FdhD/NarQ family LYZ39_06585 PF12838 4Fe-4S dicluster domain LYZ39_06585 PF00384 Molybdopterin oxidoreductase LYZ39_06585 PF01568 Molydopterin dinucleotide binding domain LYZ39_06585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LYZ39_06585 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LYZ39_06590 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LYZ39_06590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LYZ39_06590 PF00037 4Fe-4S binding domain LYZ39_06605 PF04055 Radical SAM superfamily LYZ39_06605 PF06463 Molybdenum Cofactor Synthesis C LYZ39_06610 PF12804 MobA-like NTP transferase domain LYZ39_06615 PF00994 Probable molybdopterin binding domain LYZ39_06615 PF03453 MoeA N-terminal region (domain I and II) LYZ39_06615 PF03454 MoeA C-terminal region (domain IV) LYZ39_06620 PF00994 Probable molybdopterin binding domain LYZ39_06625 PF02391 MoaE protein LYZ39_06635 PF01967 MoaC family LYZ39_06645 PF01738 Dienelactone hydrolase family LYZ39_06655 PF08534 Redoxin LYZ39_06670 PF06968 Biotin and Thiamin Synthesis associated domain LYZ39_06670 PF04055 Radical SAM superfamily LYZ39_06710 PF00248 Aldo/keto reductase family LYZ39_06715 PF00795 Carbon-nitrogen hydrolase LYZ39_06720 PF00571 CBS domain LYZ39_06720 PF03471 Transporter associated domain LYZ39_06725 PF02130 Uncharacterized protein family UPF0054 LYZ39_06730 PF02562 PhoH-like protein LYZ39_06735 PF01938 TRAM domain LYZ39_06735 PF00919 Uncharacterized protein family UPF0004 LYZ39_06735 PF04055 Radical SAM superfamily LYZ39_06745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LYZ39_06745 PF01411 tRNA synthetases class II (A) LYZ39_06745 PF02272 DHHA1 domain LYZ39_06765 PF07549 SecD/SecF GG Motif LYZ39_06765 PF02355 Protein export membrane protein LYZ39_06770 PF07549 SecD/SecF GG Motif LYZ39_06770 PF13721 SecD export protein N-terminal TM region LYZ39_06770 PF02355 Protein export membrane protein LYZ39_06775 PF02699 Preprotein translocase subunit LYZ39_06780 PF01702 Queuine tRNA-ribosyltransferase LYZ39_06785 PF02547 Queuosine biosynthesis protein LYZ39_06795 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LYZ39_06805 PF10414 Sirohaem synthase dimerisation region LYZ39_06805 PF14824 Sirohaem biosynthesis protein central LYZ39_06805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LYZ39_06820 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_06825 PF00005 ABC transporter LYZ39_06835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LYZ39_06835 PF00384 Molybdopterin oxidoreductase LYZ39_06835 PF01568 Molydopterin dinucleotide binding domain LYZ39_06835 PF04324 BFD-like [2Fe-2S] binding domain LYZ39_06845 PF05957 Bacterial protein of unknown function (DUF883) LYZ39_06860 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LYZ39_06865 PF01464 Transglycosylase SLT domain LYZ39_06865 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LYZ39_06870 PF00155 Aminotransferase class I and II LYZ39_06880 PF01515 Phosphate acetyl/butaryl transferase LYZ39_06880 PF03949 Malic enzyme, NAD binding domain LYZ39_06880 PF00390 Malic enzyme, N-terminal domain LYZ39_06885 PF01734 Patatin-like phospholipase LYZ39_06890 PF01337 Barstar (barnase inhibitor) LYZ39_06895 PF04452 RNA methyltransferase LYZ39_06900 PF00456 Transketolase, thiamine diphosphate binding domain LYZ39_06900 PF02779 Transketolase, pyrimidine binding domain LYZ39_06900 PF02780 Transketolase, C-terminal domain LYZ39_06905 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LYZ39_06905 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LYZ39_06910 PF00162 Phosphoglycerate kinase LYZ39_06915 PF01740 STAS domain LYZ39_06915 PF00916 Sulfate permease family LYZ39_06925 PF00871 Acetokinase family LYZ39_06930 PF01515 Phosphate acetyl/butaryl transferase LYZ39_06935 PF11339 Protein of unknown function (DUF3141) LYZ39_06945 PF14834 Glutathione S-transferase, C-terminal domain LYZ39_06945 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_06955 PF00583 Acetyltransferase (GNAT) family LYZ39_06960 PF00226 DnaJ domain LYZ39_06960 PF01556 DnaJ C terminal domain LYZ39_06990 PF01384 Phosphate transporter family LYZ39_07000 PF00994 Probable molybdopterin binding domain LYZ39_07010 PF01551 Peptidase family M23 LYZ39_07010 PF01476 LysM domain LYZ39_07010 PF08525 Opacity-associated protein A N-terminal motif LYZ39_07020 PF01176 Translation initiation factor 1A / IF-1 LYZ39_07035 PF00005 ABC transporter LYZ39_07045 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07055 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_07065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_07065 PF03466 LysR substrate binding domain LYZ39_07075 PF06299 Protein of unknown function (DUF1045) LYZ39_07080 PF07969 Amidohydrolase family LYZ39_07085 PF00392 Bacterial regulatory proteins, gntR family LYZ39_07085 PF07702 UTRA domain LYZ39_07090 PF06754 Phosphonate metabolism protein PhnG LYZ39_07100 PF05861 Bacterial phosphonate metabolism protein (PhnI) LYZ39_07105 PF06007 Phosphonate metabolism protein PhnJ LYZ39_07110 PF00005 ABC transporter LYZ39_07115 PF00005 ABC transporter LYZ39_07120 PF07969 Amidohydrolase family LYZ39_07140 PF00375 Sodium:dicarboxylate symporter family LYZ39_07150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_07160 PF07687 Peptidase dimerisation domain LYZ39_07160 PF01546 Peptidase family M20/M25/M40 LYZ39_07165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_07170 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07175 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_07175 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_07180 PF00005 ABC transporter LYZ39_07185 PF01425 Amidase LYZ39_07190 PF01116 Fructose-bisphosphate aldolase class-II LYZ39_07200 PF01259 SAICAR synthetase LYZ39_07210 PF02600 Disulfide bond formation protein DsbB LYZ39_07215 PF00731 AIR carboxylase LYZ39_07220 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LYZ39_07220 PF02222 ATP-grasp domain LYZ39_07225 PF03481 Putative GTP-binding controlling metal-binding LYZ39_07225 PF01300 Telomere recombination LYZ39_07230 PF09339 IclR helix-turn-helix domain LYZ39_07230 PF01614 Bacterial transcriptional regulator LYZ39_07235 PF01144 Coenzyme A transferase LYZ39_07240 PF01144 Coenzyme A transferase LYZ39_07245 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_07250 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_07255 PF01614 Bacterial transcriptional regulator LYZ39_07255 PF09339 IclR helix-turn-helix domain LYZ39_07260 PF00491 Arginase family LYZ39_07265 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_07270 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07275 PF00005 ABC transporter LYZ39_07280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_07280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_07285 PF00005 ABC transporter LYZ39_07290 PF00005 ABC transporter LYZ39_07290 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_07300 PF02653 Branched-chain amino acid transport system / permease component LYZ39_07315 PF00501 AMP-binding enzyme LYZ39_07315 PF13193 AMP-binding enzyme C-terminal domain LYZ39_07325 PF01202 Shikimate kinase LYZ39_07330 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_07340 PF00037 4Fe-4S binding domain LYZ39_07340 PF00175 Oxidoreductase NAD-binding domain LYZ39_07340 PF00970 Oxidoreductase FAD-binding domain LYZ39_07355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_07355 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_07355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_07360 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_07360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_07360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_07365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_07365 PF03466 LysR substrate binding domain LYZ39_07370 PF02899 Phage integrase, N-terminal SAM-like domain LYZ39_07370 PF00589 Phage integrase family LYZ39_07375 PF04073 Aminoacyl-tRNA editing domain LYZ39_07385 PF00107 Zinc-binding dehydrogenase LYZ39_07385 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_07395 PF00768 D-alanyl-D-alanine carboxypeptidase LYZ39_07420 PF13361 UvrD-like helicase C-terminal domain LYZ39_07420 PF00580 UvrD/REP helicase N-terminal domain LYZ39_07420 PF12705 PD-(D/E)XK nuclease superfamily LYZ39_07435 PF07660 Secretin and TonB N terminus short domain LYZ39_07435 PF07715 TonB-dependent Receptor Plug Domain LYZ39_07435 PF00593 TonB dependent receptor LYZ39_07445 PF12170 DNA polymerase III tau subunit V interacting with alpha LYZ39_07445 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LYZ39_07445 PF12169 DNA polymerase III subunits gamma and tau domain III LYZ39_07450 PF02575 YbaB/EbfC DNA-binding family LYZ39_07455 PF02132 RecR protein LYZ39_07455 PF13662 Toprim domain LYZ39_07460 PF02515 CoA-transferase family III LYZ39_07470 PF00005 ABC transporter LYZ39_07475 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07480 PF01126 Heme oxygenase LYZ39_07490 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_07490 PF00072 Response regulator receiver domain LYZ39_07495 PF01590 GAF domain LYZ39_07495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_07495 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_07495 PF08446 PAS fold LYZ39_07495 PF00360 Phytochrome region LYZ39_07505 PF00923 Transaldolase/Fructose-6-phosphate aldolase LYZ39_07510 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LYZ39_07510 PF00117 Glutamine amidotransferase class-I LYZ39_07515 PF02142 MGS-like domain LYZ39_07515 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LYZ39_07515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LYZ39_07525 PF00300 Histidine phosphatase superfamily (branch 1) LYZ39_07530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_07530 PF03466 LysR substrate binding domain LYZ39_07535 PF00005 ABC transporter LYZ39_07535 PF08402 TOBE domain LYZ39_07540 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07555 PF00860 Permease family LYZ39_07560 PF01272 Transcription elongation factor, GreA/GreB, C-term LYZ39_07560 PF03449 Transcription elongation factor, N-terminal LYZ39_07565 PF01985 CRS1 / YhbY (CRM) domain LYZ39_07570 PF01728 FtsJ-like methyltransferase LYZ39_07575 PF00004 ATPase family associated with various cellular activities (AAA) LYZ39_07575 PF17862 AAA+ lid domain LYZ39_07575 PF01434 Peptidase family M41 LYZ39_07575 PF06480 FtsH Extracellular LYZ39_07580 PF00809 Pterin binding enzyme LYZ39_07585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LYZ39_07585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LYZ39_07585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LYZ39_07585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LYZ39_07595 PF02541 Ppx/GppA phosphatase family LYZ39_07600 PF02503 Polyphosphate kinase middle domain LYZ39_07600 PF13090 Polyphosphate kinase C-terminal domain 2 LYZ39_07600 PF17941 Polyphosphate kinase C-terminal domain 1 LYZ39_07600 PF13089 Polyphosphate kinase N-terminal domain LYZ39_07605 PF12849 PBP superfamily domain LYZ39_07610 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07615 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07620 PF00005 ABC transporter LYZ39_07625 PF07690 Major Facilitator Superfamily LYZ39_07695 PF13018 Extended Signal Peptide of Type V secretion system LYZ39_07695 PF03797 Autotransporter beta-domain LYZ39_07695 PF16168 Adhesin of bacterial autotransporter system, probable stalk LYZ39_07705 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_07710 PF00324 Amino acid permease LYZ39_07730 PF02753 Pili assembly chaperone PapD, C-terminal domain LYZ39_07730 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LYZ39_07735 PF13953 PapC C-terminal domain LYZ39_07735 PF00577 Outer membrane usher protein LYZ39_07735 PF13954 PapC N-terminal domain LYZ39_07750 PF00109 Beta-ketoacyl synthase, N-terminal domain LYZ39_07750 PF02801 Beta-ketoacyl synthase, C-terminal domain LYZ39_07770 PF12951 Passenger-associated-transport-repeat LYZ39_07770 PF12951 Passenger-associated-transport-repeat LYZ39_07785 PF00563 EAL domain LYZ39_07785 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_07785 PF08447 PAS fold LYZ39_07785 PF08448 PAS fold LYZ39_07790 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_07790 PF00072 Response regulator receiver domain LYZ39_07790 PF01627 Hpt domain LYZ39_07790 PF00989 PAS fold LYZ39_07790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_07790 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_07800 PF00072 Response regulator receiver domain LYZ39_07800 PF00196 Bacterial regulatory proteins, luxR family LYZ39_07805 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_07805 PF01627 Hpt domain LYZ39_07805 PF00072 Response regulator receiver domain LYZ39_07805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LYZ39_07805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_07805 PF00672 HAMP domain LYZ39_07815 PF01810 LysE type translocator LYZ39_07830 PF00857 Isochorismatase family LYZ39_07835 PF03466 LysR substrate binding domain LYZ39_07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_07845 PF00356 Bacterial regulatory proteins, lacI family LYZ39_07845 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LYZ39_07855 PF01042 Endoribonuclease L-PSP LYZ39_07860 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_07865 PF00005 ABC transporter LYZ39_07875 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_07885 PF06719 AraC-type transcriptional regulator N-terminus LYZ39_07885 PF12833 Helix-turn-helix domain LYZ39_07890 PF00248 Aldo/keto reductase family LYZ39_07915 PF02469 Fasciclin domain LYZ39_07930 PF05724 Thiopurine S-methyltransferase (TPMT) LYZ39_07940 PF00550 Phosphopantetheine attachment site LYZ39_07940 PF08659 KR domain LYZ39_07940 PF00698 Acyl transferase domain LYZ39_07940 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_07940 PF02801 Beta-ketoacyl synthase, C-terminal domain LYZ39_07940 PF14765 Polyketide synthase dehydratase LYZ39_07940 PF00107 Zinc-binding dehydrogenase LYZ39_07940 PF00109 Beta-ketoacyl synthase, N-terminal domain LYZ39_07940 PF16197 Ketoacyl-synthetase C-terminal extension LYZ39_07945 PF00005 ABC transporter LYZ39_07950 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_07950 PF00005 ABC transporter LYZ39_07955 PF02653 Branched-chain amino acid transport system / permease component LYZ39_07960 PF13458 Periplasmic binding protein LYZ39_07970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_07970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_07980 PF00465 Iron-containing alcohol dehydrogenase LYZ39_07985 PF07729 FCD domain LYZ39_07985 PF00392 Bacterial regulatory proteins, gntR family LYZ39_07990 PF00456 Transketolase, thiamine diphosphate binding domain LYZ39_07995 PF02780 Transketolase, C-terminal domain LYZ39_07995 PF02779 Transketolase, pyrimidine binding domain LYZ39_08000 PF08501 Shikimate dehydrogenase substrate binding domain LYZ39_08000 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LYZ39_08000 PF01488 Shikimate / quinate 5-dehydrogenase LYZ39_08005 PF05199 GMC oxidoreductase LYZ39_08005 PF00732 GMC oxidoreductase LYZ39_08010 PF05544 Proline racemase LYZ39_08015 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_08020 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_08025 PF08402 TOBE domain LYZ39_08025 PF00005 ABC transporter LYZ39_08045 PF13426 PAS domain LYZ39_08045 PF08447 PAS fold LYZ39_08045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_08085 PF12795 Mechanosensitive ion channel porin domain LYZ39_08085 PF12794 Mechanosensitive ion channel inner membrane domain 1 LYZ39_08085 PF00924 Mechanosensitive ion channel LYZ39_08090 PF03466 LysR substrate binding domain LYZ39_08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_08095 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LYZ39_08095 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LYZ39_08100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_08100 PF03466 LysR substrate binding domain LYZ39_08125 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_08135 PF03466 LysR substrate binding domain LYZ39_08135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_08150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_08150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_08160 PF07690 Major Facilitator Superfamily LYZ39_08170 PF01425 Amidase LYZ39_08185 PF00171 Aldehyde dehydrogenase family LYZ39_08200 PF09334 tRNA synthetases class I (M) LYZ39_08200 PF13603 Leucyl-tRNA synthetase, Domain 2 LYZ39_08200 PF00133 tRNA synthetases class I (I, L, M and V) LYZ39_08200 PF08264 Anticodon-binding domain of tRNA LYZ39_08205 PF07690 Major Facilitator Superfamily LYZ39_08210 PF01047 MarR family LYZ39_08220 PF07943 Penicillin-binding protein 5, C-terminal domain LYZ39_08220 PF00768 D-alanyl-D-alanine carboxypeptidase LYZ39_08230 PF00916 Sulfate permease family LYZ39_08230 PF01740 STAS domain LYZ39_08235 PF00005 ABC transporter LYZ39_08235 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_08245 PF13458 Periplasmic binding protein LYZ39_08250 PF03466 LysR substrate binding domain LYZ39_08250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_08260 PF00471 Ribosomal protein L33 LYZ39_08265 PF00830 Ribosomal L28 family LYZ39_08270 PF07690 Major Facilitator Superfamily LYZ39_08285 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_08290 PF00571 CBS domain LYZ39_08290 PF00005 ABC transporter LYZ39_08300 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08310 PF02515 CoA-transferase family III LYZ39_08315 PF03466 LysR substrate binding domain LYZ39_08315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_08330 PF10518 TAT (twin-arginine translocation) pathway signal sequence LYZ39_08330 PF00149 Calcineurin-like phosphoesterase LYZ39_08335 PF00583 Acetyltransferase (GNAT) family LYZ39_08340 PF00850 Histone deacetylase domain LYZ39_08345 PF08281 Sigma-70, region 4 LYZ39_08345 PF04542 Sigma-70 region 2 LYZ39_08350 PF04773 FecR protein LYZ39_08350 PF16220 Domain of unknown function (DUF4880) LYZ39_08355 PF00593 TonB dependent receptor LYZ39_08355 PF07715 TonB-dependent Receptor Plug Domain LYZ39_08360 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08365 PF00107 Zinc-binding dehydrogenase LYZ39_08365 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_08370 PF02515 CoA-transferase family III LYZ39_08375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_08385 PF04679 ATP dependent DNA ligase C terminal region LYZ39_08385 PF01068 ATP dependent DNA ligase domain LYZ39_08385 PF04675 DNA ligase N terminus LYZ39_08390 PF04675 DNA ligase N terminus LYZ39_08390 PF01068 ATP dependent DNA ligase domain LYZ39_08390 PF04679 ATP dependent DNA ligase C terminal region LYZ39_08395 PF00271 Helicase conserved C-terminal domain LYZ39_08395 PF08494 DEAD/H associated LYZ39_08395 PF00270 DEAD/DEAH box helicase LYZ39_08410 PF01565 FAD binding domain LYZ39_08410 PF08031 Berberine and berberine like LYZ39_08415 PF00224 Pyruvate kinase, barrel domain LYZ39_08415 PF02887 Pyruvate kinase, alpha/beta domain LYZ39_08420 PF07690 Major Facilitator Superfamily LYZ39_08425 PF00113 Enolase, C-terminal TIM barrel domain LYZ39_08425 PF03952 Enolase, N-terminal domain LYZ39_08435 PF00356 Bacterial regulatory proteins, lacI family LYZ39_08450 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_08460 PF12833 Helix-turn-helix domain LYZ39_08470 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_08475 PF13607 Succinyl-CoA ligase like flavodoxin domain LYZ39_08475 PF13380 CoA binding domain LYZ39_08480 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08485 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08490 PF02515 CoA-transferase family III LYZ39_08510 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_08510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_08525 PF00005 ABC transporter LYZ39_08525 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_08530 PF00005 ABC transporter LYZ39_08540 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08550 PF02515 CoA-transferase family III LYZ39_08555 PF02515 CoA-transferase family III LYZ39_08565 PF03328 HpcH/HpaI aldolase/citrate lyase family LYZ39_08570 PF00392 Bacterial regulatory proteins, gntR family LYZ39_08570 PF07729 FCD domain LYZ39_08595 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08600 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_08600 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_08600 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_08615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_08615 PF03466 LysR substrate binding domain LYZ39_08620 PF02785 Biotin carboxylase C-terminal domain LYZ39_08620 PF02436 Conserved carboxylase domain LYZ39_08620 PF00682 HMGL-like LYZ39_08620 PF00289 Biotin carboxylase, N-terminal domain LYZ39_08620 PF00364 Biotin-requiring enzyme LYZ39_08620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LYZ39_08625 PF02515 CoA-transferase family III LYZ39_08630 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08655 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08665 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_08670 PF01381 Helix-turn-helix LYZ39_08670 PF08671 Anti-repressor SinI LYZ39_08710 PF01618 MotA/TolQ/ExbB proton channel family LYZ39_08715 PF02472 Biopolymer transport protein ExbD/TolR LYZ39_08740 PF00639 PPIC-type PPIASE domain LYZ39_08740 PF09312 SurA N-terminal domain LYZ39_08755 PF08543 Phosphomethylpyrimidine kinase LYZ39_08760 PF02560 Cyanate lyase C-terminal domain LYZ39_08765 PF00005 ABC transporter LYZ39_08770 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_08775 PF00005 ABC transporter LYZ39_08780 PF00072 Response regulator receiver domain LYZ39_08780 PF00196 Bacterial regulatory proteins, luxR family LYZ39_08785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_08785 PF07730 Histidine kinase LYZ39_08785 PF05231 MASE1 LYZ39_08800 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08805 PF01494 FAD binding domain LYZ39_08815 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_08825 PF04209 homogentisate 1,2-dioxygenase LYZ39_08830 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_08835 PF00171 Aldehyde dehydrogenase family LYZ39_08840 PF00005 ABC transporter LYZ39_08845 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_08850 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_08855 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_08860 PF01266 FAD dependent oxidoreductase LYZ39_08865 PF01381 Helix-turn-helix LYZ39_08900 PF11339 Protein of unknown function (DUF3141) LYZ39_08905 PF01515 Phosphate acetyl/butaryl transferase LYZ39_08910 PF00871 Acetokinase family LYZ39_08915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_08915 PF03466 LysR substrate binding domain LYZ39_08920 PF00795 Carbon-nitrogen hydrolase LYZ39_08930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_08935 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_08940 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_08945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_08945 PF00005 ABC transporter LYZ39_08965 PF00691 OmpA family LYZ39_08965 PF00223 Photosystem I psaA/psaB protein LYZ39_08970 PF13609 Gram-negative porin LYZ39_08980 PF00155 Aminotransferase class I and II LYZ39_08985 PF00155 Aminotransferase class I and II LYZ39_08985 PF00392 Bacterial regulatory proteins, gntR family LYZ39_08995 PF02615 Malate/L-lactate dehydrogenase LYZ39_09000 PF00595 PDZ domain LYZ39_09010 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_09015 PF07729 FCD domain LYZ39_09015 PF00392 Bacterial regulatory proteins, gntR family LYZ39_09035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_09035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_09045 PF02803 Thiolase, C-terminal domain LYZ39_09045 PF00108 Thiolase, N-terminal domain LYZ39_09050 PF01144 Coenzyme A transferase LYZ39_09055 PF01144 Coenzyme A transferase LYZ39_09065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_09065 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_09065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_09070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_09070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_09070 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_09085 PF02515 CoA-transferase family III LYZ39_09090 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_09095 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_09100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_09100 PF03466 LysR substrate binding domain LYZ39_09105 PF13396 Phospholipase_D-nuclease N-terminal LYZ39_09105 PF13091 PLD-like domain LYZ39_09125 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LYZ39_09130 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_09130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_09135 PF00873 AcrB/AcrD/AcrF family LYZ39_09140 PF02321 Outer membrane efflux protein LYZ39_09150 PF01594 AI-2E family transporter LYZ39_09155 PF13520 Amino acid permease LYZ39_09165 PF13520 Amino acid permease LYZ39_09170 PF02080 TrkA-C domain LYZ39_09170 PF03600 Citrate transporter LYZ39_09180 PF02627 Carboxymuconolactone decarboxylase family LYZ39_09190 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family LYZ39_09210 PF04299 Putative FMN-binding domain LYZ39_09245 PF04228 Putative neutral zinc metallopeptidase LYZ39_09250 PF01300 Telomere recombination LYZ39_09255 PF02163 Peptidase family M50 LYZ39_09260 PF00701 Dihydrodipicolinate synthetase family LYZ39_09265 PF06804 NlpB/DapX lipoprotein LYZ39_09275 PF08007 Cupin superfamily protein LYZ39_09280 PF00488 MutS domain V LYZ39_09280 PF01624 MutS domain I LYZ39_09280 PF05188 MutS domain II LYZ39_09280 PF05192 MutS domain III LYZ39_09280 PF05190 MutS family domain IV LYZ39_09290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_09290 PF03466 LysR substrate binding domain LYZ39_09305 PF00107 Zinc-binding dehydrogenase LYZ39_09305 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_09310 PF00106 short chain dehydrogenase LYZ39_09315 PF03466 LysR substrate binding domain LYZ39_09315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_09325 PF07311 Dodecin LYZ39_09345 PF07690 Major Facilitator Superfamily LYZ39_09355 PF03358 NADPH-dependent FMN reductase LYZ39_09370 PF00392 Bacterial regulatory proteins, gntR family LYZ39_09370 PF07729 FCD domain LYZ39_09375 PF01425 Amidase LYZ39_09385 PF00005 ABC transporter LYZ39_09390 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_09395 PF09084 NMT1/THI5 like LYZ39_09400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_09400 PF03466 LysR substrate binding domain LYZ39_09410 PF00083 Sugar (and other) transporter LYZ39_09415 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_09420 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_09425 PF03466 LysR substrate binding domain LYZ39_09425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_09450 PF00924 Mechanosensitive ion channel LYZ39_09450 PF05552 Conserved TM helix LYZ39_09460 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_09465 PF00588 SpoU rRNA Methylase family LYZ39_09470 PF00459 Inositol monophosphatase family LYZ39_09480 PF05573 NosL LYZ39_09485 PF12679 ABC-2 family transporter protein LYZ39_09490 PF00005 ABC transporter LYZ39_09495 PF05048 Periplasmic copper-binding protein (NosD) LYZ39_09500 PF18793 Nitrous oxide reductase propeller repeat 2 LYZ39_09500 PF13473 Cupredoxin-like domain LYZ39_09500 PF18764 Nitrous oxide reductase propeller repeat LYZ39_09505 PF04205 FMN-binding domain LYZ39_09505 PF12801 4Fe-4S binding domain LYZ39_09510 PF00127 Copper binding proteins, plastocyanin/azurin family LYZ39_09515 PF03741 Integral membrane protein TerC family LYZ39_09515 PF03471 Transporter associated domain LYZ39_09520 PF02673 Bacitracin resistance protein BacA LYZ39_09525 PF00149 Calcineurin-like phosphoesterase LYZ39_09530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LYZ39_09540 PF01406 tRNA synthetases class I (C) catalytic domain LYZ39_09540 PF09190 DALR domain LYZ39_09545 PF00730 HhH-GPD superfamily base excision DNA repair protein LYZ39_09545 PF12833 Helix-turn-helix domain LYZ39_09545 PF06029 AlkA N-terminal domain LYZ39_09545 PF02805 Metal binding domain of Ada LYZ39_09550 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LYZ39_09555 PF09179 TilS substrate binding domain LYZ39_09555 PF01171 PP-loop family LYZ39_09560 PF01842 ACT domain LYZ39_09560 PF13840 ACT domain LYZ39_09560 PF00696 Amino acid kinase family LYZ39_09580 PF07702 UTRA domain LYZ39_09580 PF00392 Bacterial regulatory proteins, gntR family LYZ39_09585 PF01425 Amidase LYZ39_09595 PF02653 Branched-chain amino acid transport system / permease component LYZ39_09600 PF02653 Branched-chain amino acid transport system / permease component LYZ39_09600 PF11862 Domain of unknown function (DUF3382) LYZ39_09605 PF00005 ABC transporter LYZ39_09605 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_09610 PF00005 ABC transporter LYZ39_09615 PF04115 Ureidoglycolate lyase LYZ39_09625 PF04185 Phosphoesterase family LYZ39_09665 PF03466 LysR substrate binding domain LYZ39_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_09680 PF02146 Sir2 family LYZ39_09685 PF05995 Cysteine dioxygenase type I LYZ39_09690 PF09339 IclR helix-turn-helix domain LYZ39_09690 PF01614 Bacterial transcriptional regulator LYZ39_09695 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_09700 PF02515 CoA-transferase family III LYZ39_09715 PF01144 Coenzyme A transferase LYZ39_09720 PF00501 AMP-binding enzyme LYZ39_09720 PF13193 AMP-binding enzyme C-terminal domain LYZ39_09725 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_09730 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_09735 PF00392 Bacterial regulatory proteins, gntR family LYZ39_09735 PF07729 FCD domain LYZ39_09750 PF02566 OsmC-like protein LYZ39_09755 PF03466 LysR substrate binding domain LYZ39_09755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_09765 PF08281 Sigma-70, region 4 LYZ39_09765 PF04542 Sigma-70 region 2 LYZ39_09765 PF12680 SnoaL-like domain LYZ39_09790 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LYZ39_09795 PF17042 Nucleotide-binding C-terminal domain LYZ39_09795 PF07005 Sugar-binding N-terminal domain LYZ39_09800 PF03812 2-keto-3-deoxygluconate permease LYZ39_09805 PF00593 TonB dependent receptor LYZ39_09805 PF07715 TonB-dependent Receptor Plug Domain LYZ39_09810 PF13193 AMP-binding enzyme C-terminal domain LYZ39_09810 PF00501 AMP-binding enzyme LYZ39_09825 PF02803 Thiolase, C-terminal domain LYZ39_09825 PF00108 Thiolase, N-terminal domain LYZ39_09830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_09830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_09830 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_09840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_09840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_09840 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_09845 PF02803 Thiolase, C-terminal domain LYZ39_09845 PF00108 Thiolase, N-terminal domain LYZ39_09850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_09850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_09850 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_09850 PF09317 Domain of unknown function (DUF1974) LYZ39_09865 PF00072 Response regulator receiver domain LYZ39_09865 PF00196 Bacterial regulatory proteins, luxR family LYZ39_09870 PF00072 Response regulator receiver domain LYZ39_09870 PF00196 Bacterial regulatory proteins, luxR family LYZ39_09875 PF13579 Glycosyl transferase 4-like domain LYZ39_09875 PF00534 Glycosyl transferases group 1 LYZ39_09880 PF00132 Bacterial transferase hexapeptide (six repeats) LYZ39_09890 PF00534 Glycosyl transferases group 1 LYZ39_09890 PF13439 Glycosyltransferase Family 4 LYZ39_09900 PF00535 Glycosyl transferase family 2 LYZ39_09910 PF01370 NAD dependent epimerase/dehydratase family LYZ39_09915 PF16363 GDP-mannose 4,6 dehydratase LYZ39_09925 PF01050 Mannose-6-phosphate isomerase LYZ39_09925 PF00483 Nucleotidyl transferase LYZ39_09930 PF00293 NUDIX domain LYZ39_09935 PF02397 Bacterial sugar transferase LYZ39_09940 PF02563 Polysaccharide biosynthesis/export protein LYZ39_09940 PF10531 SLBB domain LYZ39_09945 PF02706 Chain length determinant protein LYZ39_09945 PF13807 G-rich domain on putative tyrosine kinase LYZ39_09945 PF13614 AAA domain LYZ39_09950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LYZ39_09950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LYZ39_09950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LYZ39_09950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LYZ39_09955 PF00342 Phosphoglucose isomerase LYZ39_09960 PF16363 GDP-mannose 4,6 dehydratase LYZ39_09965 PF00132 Bacterial transferase hexapeptide (six repeats) LYZ39_09970 PF02146 Sir2 family LYZ39_09975 PF00459 Inositol monophosphatase family LYZ39_09980 PF00171 Aldehyde dehydrogenase family LYZ39_09985 PF00202 Aminotransferase class-III LYZ39_09990 PF00392 Bacterial regulatory proteins, gntR family LYZ39_09990 PF00155 Aminotransferase class I and II LYZ39_10000 PF00580 UvrD/REP helicase N-terminal domain LYZ39_10000 PF13361 UvrD-like helicase C-terminal domain LYZ39_10005 PF01544 CorA-like Mg2+ transporter protein LYZ39_10020 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10025 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_10025 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_10030 PF00005 ABC transporter LYZ39_10040 PF09285 Elongation factor P, C-terminal LYZ39_10040 PF08207 Elongation factor P (EF-P) KOW-like domain LYZ39_10040 PF01132 Elongation factor P (EF-P) OB domain LYZ39_10055 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LYZ39_10060 PF00694 Aconitase C-terminal domain LYZ39_10060 PF00330 Aconitase family (aconitate hydratase) LYZ39_10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10065 PF03466 LysR substrate binding domain LYZ39_10075 PF00501 AMP-binding enzyme LYZ39_10075 PF13193 AMP-binding enzyme C-terminal domain LYZ39_10080 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10085 PF03466 LysR substrate binding domain LYZ39_10085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10095 PF07715 TonB-dependent Receptor Plug Domain LYZ39_10095 PF00593 TonB dependent receptor LYZ39_10105 PF11791 Aconitate B N-terminal domain LYZ39_10105 PF06434 Aconitate hydratase 2 N-terminus LYZ39_10105 PF00330 Aconitase family (aconitate hydratase) LYZ39_10125 PF00571 CBS domain LYZ39_10130 PF03466 LysR substrate binding domain LYZ39_10130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10135 PF02515 CoA-transferase family III LYZ39_10145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_10145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_10145 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_10150 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10155 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_10160 PF02803 Thiolase, C-terminal domain LYZ39_10160 PF00108 Thiolase, N-terminal domain LYZ39_10170 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_10175 PF13607 Succinyl-CoA ligase like flavodoxin domain LYZ39_10175 PF13380 CoA binding domain LYZ39_10180 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10185 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_10185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_10185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_10200 PF07729 FCD domain LYZ39_10200 PF00392 Bacterial regulatory proteins, gntR family LYZ39_10210 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_10215 PF13193 AMP-binding enzyme C-terminal domain LYZ39_10215 PF00501 AMP-binding enzyme LYZ39_10220 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10225 PF00248 Aldo/keto reductase family LYZ39_10235 PF02653 Branched-chain amino acid transport system / permease component LYZ39_10240 PF00005 ABC transporter LYZ39_10250 PF00005 ABC transporter LYZ39_10255 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10265 PF01266 FAD dependent oxidoreductase LYZ39_10270 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LYZ39_10270 PF01266 FAD dependent oxidoreductase LYZ39_10300 PF02675 S-adenosylmethionine decarboxylase LYZ39_10310 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10315 PF17850 CysA C-terminal regulatory domain LYZ39_10315 PF00005 ABC transporter LYZ39_10320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10320 PF03459 TOBE domain LYZ39_10340 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_10340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_10345 PF00873 AcrB/AcrD/AcrF family LYZ39_10350 PF02321 Outer membrane efflux protein LYZ39_10355 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LYZ39_10360 PF01648 4'-phosphopantetheinyl transferase superfamily LYZ39_10365 PF00933 Glycosyl hydrolase family 3 N terminal domain LYZ39_10370 PF08459 UvrC Helix-hairpin-helix N-terminal LYZ39_10370 PF02151 UvrB/uvrC motif LYZ39_10370 PF01541 GIY-YIG catalytic domain LYZ39_10375 PF01066 CDP-alcohol phosphatidyltransferase LYZ39_10385 PF00034 Cytochrome c LYZ39_10385 PF03150 Di-haem cytochrome c peroxidase LYZ39_10390 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LYZ39_10390 PF14489 QueF-like protein LYZ39_10395 PF00463 Isocitrate lyase family LYZ39_10400 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_10400 PF00107 Zinc-binding dehydrogenase LYZ39_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10405 PF03466 LysR substrate binding domain LYZ39_10410 PF03466 LysR substrate binding domain LYZ39_10410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10415 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10420 PF03328 HpcH/HpaI aldolase/citrate lyase family LYZ39_10425 PF02515 CoA-transferase family III LYZ39_10430 PF13649 Methyltransferase domain LYZ39_10440 PF00155 Aminotransferase class I and II LYZ39_10445 PF00202 Aminotransferase class-III LYZ39_10460 PF00115 Cytochrome C and Quinol oxidase polypeptide I LYZ39_10475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LYZ39_10475 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LYZ39_10480 PF13746 4Fe-4S dicluster domain LYZ39_10480 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LYZ39_10480 PF12801 4Fe-4S binding domain LYZ39_10495 PF08274 PhnA Zinc-Ribbon LYZ39_10495 PF03831 PhnA domain LYZ39_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10500 PF03466 LysR substrate binding domain LYZ39_10505 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LYZ39_10515 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LYZ39_10515 PF13378 Enolase C-terminal domain-like LYZ39_10520 PF00701 Dihydrodipicolinate synthetase family LYZ39_10525 PF00005 ABC transporter LYZ39_10530 PF01061 ABC-2 type transporter LYZ39_10535 PF13417 Glutathione S-transferase, N-terminal domain LYZ39_10555 PF03006 Haemolysin-III related LYZ39_10565 PF10503 Esterase PHB depolymerase LYZ39_10575 PF18029 Glyoxalase-like domain LYZ39_10585 PF02805 Metal binding domain of Ada LYZ39_10585 PF12833 Helix-turn-helix domain LYZ39_10595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_10595 PF00672 HAMP domain LYZ39_10595 PF02203 Tar ligand binding domain homologue LYZ39_10600 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LYZ39_10605 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10630 PF02567 Phenazine biosynthesis-like protein LYZ39_10635 PF01266 FAD dependent oxidoreductase LYZ39_10640 PF00144 Beta-lactamase LYZ39_10645 PF01546 Peptidase family M20/M25/M40 LYZ39_10645 PF07687 Peptidase dimerisation domain LYZ39_10650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_10655 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10660 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_10660 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_10665 PF00005 ABC transporter LYZ39_10670 PF00005 ABC transporter LYZ39_10670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_10685 PF03180 NLPA lipoprotein LYZ39_10690 PF09383 NIL domain LYZ39_10690 PF00005 ABC transporter LYZ39_10695 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10705 PF01053 Cys/Met metabolism PLP-dependent enzyme LYZ39_10720 PF00072 Response regulator receiver domain LYZ39_10720 PF00196 Bacterial regulatory proteins, luxR family LYZ39_10740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LYZ39_10740 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_10740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_10740 PF01627 Hpt domain LYZ39_10740 PF00072 Response regulator receiver domain LYZ39_10740 PF00672 HAMP domain LYZ39_10745 PF03976 Polyphosphate kinase 2 (PPK2) LYZ39_10755 PF01253 Translation initiation factor SUI1 LYZ39_10760 PF01479 S4 domain LYZ39_10785 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10790 PF04909 Amidohydrolase LYZ39_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10795 PF03466 LysR substrate binding domain LYZ39_10800 PF06472 ABC transporter transmembrane region 2 LYZ39_10800 PF00005 ABC transporter LYZ39_10805 PF03447 Homoserine dehydrogenase, NAD binding domain LYZ39_10805 PF01958 Domain of unknown function DUF108 LYZ39_10810 PF00583 Acetyltransferase (GNAT) family LYZ39_10820 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10825 PF07687 Peptidase dimerisation domain LYZ39_10825 PF01546 Peptidase family M20/M25/M40 LYZ39_10830 PF07690 Major Facilitator Superfamily LYZ39_10835 PF00440 Bacterial regulatory proteins, tetR family LYZ39_10835 PF17934 Tetracyclin repressor-like, C-terminal domain LYZ39_10840 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_10845 PF00135 Carboxylesterase family LYZ39_10850 PF00962 Adenosine/AMP deaminase LYZ39_10855 PF03466 LysR substrate binding domain LYZ39_10855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_10875 PF01554 MatE LYZ39_10880 PF13406 Transglycosylase SLT domain LYZ39_10890 PF03352 Methyladenine glycosylase LYZ39_10890 PF00117 Glutamine amidotransferase class-I LYZ39_10890 PF00958 GMP synthase C terminal domain LYZ39_10890 PF13673 Acetyltransferase (GNAT) domain LYZ39_10890 PF13302 Acetyltransferase (GNAT) domain LYZ39_10900 PF13673 Acetyltransferase (GNAT) domain LYZ39_10910 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10910 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_10915 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_10920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_10925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_10925 PF00005 ABC transporter LYZ39_10935 PF00005 ABC transporter LYZ39_10940 PF01551 Peptidase family M23 LYZ39_10940 PF10145 Phage-related minor tail protein LYZ39_10940 PF01464 Transglycosylase SLT domain LYZ39_10955 PF13404 AsnC-type helix-turn-helix domain LYZ39_10955 PF01037 Lrp/AsnC ligand binding domain LYZ39_10975 PF03069 Acetamidase/Formamidase family LYZ39_11010 PF12843 Putative quorum-sensing-regulated virulence factor LYZ39_11020 PF00012 Hsp70 protein LYZ39_11025 PF00293 NUDIX domain LYZ39_11060 PF00027 Cyclic nucleotide-binding domain LYZ39_11060 PF13545 Crp-like helix-turn-helix domain LYZ39_11070 PF00004 ATPase family associated with various cellular activities (AAA) LYZ39_11070 PF07724 AAA domain (Cdc48 subfamily) LYZ39_11070 PF17871 AAA lid domain LYZ39_11070 PF02861 Clp amino terminal domain, pathogenicity island component LYZ39_11070 PF10431 C-terminal, D2-small domain, of ClpB protein LYZ39_11090 PF09370 Phosphoenolpyruvate hydrolase-like LYZ39_11100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_11100 PF03466 LysR substrate binding domain LYZ39_11105 PF07969 Amidohydrolase family LYZ39_11115 PF00175 Oxidoreductase NAD-binding domain LYZ39_11115 PF00258 Flavodoxin LYZ39_11115 PF00667 FAD binding domain LYZ39_11120 PF02424 ApbE family LYZ39_11145 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LYZ39_11150 PF00392 Bacterial regulatory proteins, gntR family LYZ39_11150 PF07702 UTRA domain LYZ39_11155 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_11160 PF03466 LysR substrate binding domain LYZ39_11160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_11165 PF03328 HpcH/HpaI aldolase/citrate lyase family LYZ39_11170 PF02515 CoA-transferase family III LYZ39_11180 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_11185 PF02627 Carboxymuconolactone decarboxylase family LYZ39_11205 PF01168 Alanine racemase, N-terminal domain LYZ39_11205 PF00842 Alanine racemase, C-terminal domain LYZ39_11215 PF03328 HpcH/HpaI aldolase/citrate lyase family LYZ39_11220 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_11225 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_11230 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_11235 PF00171 Aldehyde dehydrogenase family LYZ39_11240 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LYZ39_11255 PF18073 Rubredoxin metal binding domain LYZ39_11270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LYZ39_11270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_11275 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_11280 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_11290 PF00392 Bacterial regulatory proteins, gntR family LYZ39_11290 PF07729 FCD domain LYZ39_11300 PF00920 Dehydratase family LYZ39_11305 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_11310 PF03328 HpcH/HpaI aldolase/citrate lyase family LYZ39_11315 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LYZ39_11315 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LYZ39_11320 PF03466 LysR substrate binding domain LYZ39_11320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_11325 PF01649 Ribosomal protein S20 LYZ39_11335 PF03023 Lipid II flippase MurJ LYZ39_11340 PF00106 short chain dehydrogenase LYZ39_11345 PF05191 Adenylate kinase, active site lid LYZ39_11350 PF02348 Cytidylyltransferase LYZ39_11355 PF03966 Trm112p-like protein LYZ39_11360 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LYZ39_11370 PF01618 MotA/TolQ/ExbB proton channel family LYZ39_11375 PF02601 Exonuclease VII, large subunit LYZ39_11375 PF13742 OB-fold nucleic acid binding domain LYZ39_11385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LYZ39_11385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LYZ39_11390 PF00672 HAMP domain LYZ39_11390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_11390 PF02203 Tar ligand binding domain homologue LYZ39_11395 PF00654 Voltage gated chloride channel LYZ39_11400 PF02803 Thiolase, C-terminal domain LYZ39_11400 PF00108 Thiolase, N-terminal domain LYZ39_11410 PF00313 'Cold-shock' DNA-binding domain LYZ39_11415 PF02617 ATP-dependent Clp protease adaptor protein ClpS LYZ39_11420 PF00207 Alpha-2-macroglobulin family LYZ39_11420 PF07703 Alpha-2-macroglobulin bait region domain LYZ39_11420 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LYZ39_11420 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LYZ39_11420 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LYZ39_11420 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LYZ39_11420 PF17962 Bacterial macroglobulin domain 6 LYZ39_11420 PF01835 MG2 domain LYZ39_11425 PF00912 Transglycosylase LYZ39_11425 PF06832 Penicillin-Binding Protein C-terminus Family LYZ39_11425 PF00905 Penicillin binding protein transpeptidase domain LYZ39_11430 PF02861 Clp amino terminal domain, pathogenicity island component LYZ39_11430 PF17871 AAA lid domain LYZ39_11430 PF07724 AAA domain (Cdc48 subfamily) LYZ39_11430 PF00004 ATPase family associated with various cellular activities (AAA) LYZ39_11430 PF10431 C-terminal, D2-small domain, of ClpB protein LYZ39_11435 PF04403 Paraquat-inducible protein A LYZ39_11440 PF02470 MlaD protein LYZ39_11450 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LYZ39_11450 PF01619 Proline dehydrogenase LYZ39_11450 PF00171 Aldehyde dehydrogenase family LYZ39_11450 PF14850 DNA-binding domain of Proline dehydrogenase LYZ39_11455 PF13458 Periplasmic binding protein LYZ39_11460 PF02653 Branched-chain amino acid transport system / permease component LYZ39_11465 PF02653 Branched-chain amino acid transport system / permease component LYZ39_11465 PF11862 Domain of unknown function (DUF3382) LYZ39_11470 PF00005 ABC transporter LYZ39_11470 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_11475 PF00005 ABC transporter LYZ39_11480 PF02515 CoA-transferase family III LYZ39_11485 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_11490 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_11495 PF00392 Bacterial regulatory proteins, gntR family LYZ39_11495 PF07729 FCD domain LYZ39_11500 PF07690 Major Facilitator Superfamily LYZ39_11515 PF01566 Natural resistance-associated macrophage protein LYZ39_11520 PF02566 OsmC-like protein LYZ39_11530 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_11535 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_11540 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_11545 PF00005 ABC transporter LYZ39_11550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LYZ39_11580 PF03575 Peptidase family S51 LYZ39_11595 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_11600 PF04127 DNA / pantothenate metabolism flavoprotein LYZ39_11600 PF02441 Flavoprotein LYZ39_11605 PF01252 Signal peptidase (SPase) II LYZ39_11610 PF00133 tRNA synthetases class I (I, L, M and V) LYZ39_11610 PF06827 Zinc finger found in FPG and IleRS LYZ39_11610 PF08264 Anticodon-binding domain of tRNA LYZ39_11615 PF01687 Riboflavin kinase LYZ39_11615 PF06574 FAD synthetase LYZ39_11620 PF00551 Formyl transferase LYZ39_11625 PF01029 NusB family LYZ39_11625 PF01189 16S rRNA methyltransferase RsmB/F LYZ39_11640 PF00580 UvrD/REP helicase N-terminal domain LYZ39_11640 PF13361 UvrD-like helicase C-terminal domain LYZ39_11650 PF03150 Di-haem cytochrome c peroxidase LYZ39_11655 PF07715 TonB-dependent Receptor Plug Domain LYZ39_11670 PF12848 ABC transporter LYZ39_11670 PF00005 ABC transporter LYZ39_11675 PF05175 Methyltransferase small domain LYZ39_11680 PF01546 Peptidase family M20/M25/M40 LYZ39_11680 PF07687 Peptidase dimerisation domain LYZ39_11685 PF14602 Hexapeptide repeat of succinyl-transferase LYZ39_11685 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LYZ39_11685 PF00132 Bacterial transferase hexapeptide (six repeats) LYZ39_11690 PF00155 Aminotransferase class I and II LYZ39_11700 PF01757 Acyltransferase family LYZ39_11715 PF07690 Major Facilitator Superfamily LYZ39_11720 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LYZ39_11720 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LYZ39_11725 PF01266 FAD dependent oxidoreductase LYZ39_11725 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LYZ39_11730 PF02913 FAD linked oxidases, C-terminal domain LYZ39_11730 PF01565 FAD binding domain LYZ39_11740 PF00230 Major intrinsic protein LYZ39_11750 PF02308 MgtC family LYZ39_11755 PF01292 Prokaryotic cytochrome b561 LYZ39_11760 PF00793 DAHP synthetase I family LYZ39_11775 PF02470 MlaD protein LYZ39_11790 PF07690 Major Facilitator Superfamily LYZ39_11795 PF00440 Bacterial regulatory proteins, tetR family LYZ39_11810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_11810 PF03466 LysR substrate binding domain LYZ39_11815 PF01168 Alanine racemase, N-terminal domain LYZ39_11815 PF14031 Putative serine dehydratase domain LYZ39_11820 PF01042 Endoribonuclease L-PSP LYZ39_11850 PF00313 'Cold-shock' DNA-binding domain LYZ39_11860 PF00313 'Cold-shock' DNA-binding domain LYZ39_11865 PF03350 Uncharacterized protein family, UPF0114 LYZ39_11870 PF01435 Peptidase family M48 LYZ39_11875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LYZ39_11875 PF05698 Bacterial trigger factor protein (TF) C-terminus LYZ39_11875 PF05697 Bacterial trigger factor protein (TF) LYZ39_11880 PF00574 Clp protease LYZ39_11885 PF10431 C-terminal, D2-small domain, of ClpB protein LYZ39_11885 PF06689 ClpX C4-type zinc finger LYZ39_11885 PF07724 AAA domain (Cdc48 subfamily) LYZ39_11890 PF02190 ATP-dependent protease La (LON) substrate-binding domain LYZ39_11890 PF05362 Lon protease (S16) C-terminal proteolytic domain LYZ39_11890 PF00004 ATPase family associated with various cellular activities (AAA) LYZ39_11895 PF01726 LexA DNA binding domain LYZ39_11895 PF00717 Peptidase S24-like LYZ39_11900 PF00155 Aminotransferase class I and II LYZ39_11905 PF02151 UvrB/uvrC motif LYZ39_11905 PF12344 Ultra-violet resistance protein B LYZ39_11905 PF17757 UvrB interaction domain LYZ39_11905 PF00271 Helicase conserved C-terminal domain LYZ39_11905 PF04851 Type III restriction enzyme, res subunit LYZ39_11910 PF01451 Low molecular weight phosphotyrosine protein phosphatase LYZ39_11915 PF02082 Transcriptional regulator LYZ39_11920 PF00266 Aminotransferase class-V LYZ39_11925 PF01592 NifU-like N terminal domain LYZ39_11930 PF01521 Iron-sulphur cluster biosynthesis LYZ39_11935 PF07743 HSCB C-terminal oligomerisation domain LYZ39_11940 PF00012 Hsp70 protein LYZ39_11945 PF00111 2Fe-2S iron-sulfur cluster binding domain LYZ39_11950 PF04384 Iron-sulphur cluster assembly LYZ39_11955 PF02142 MGS-like domain LYZ39_11960 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_11965 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_11965 PF00005 ABC transporter LYZ39_11985 PF00005 ABC transporter LYZ39_11990 PF00501 AMP-binding enzyme LYZ39_11995 PF00108 Thiolase, N-terminal domain LYZ39_11995 PF02803 Thiolase, C-terminal domain LYZ39_12000 PF17932 Tetracyclin repressor-like, C-terminal domain LYZ39_12000 PF00440 Bacterial regulatory proteins, tetR family LYZ39_12010 PF00152 tRNA synthetases class II (D, K and N) LYZ39_12010 PF01336 OB-fold nucleic acid binding domain LYZ39_12015 PF00106 short chain dehydrogenase LYZ39_12025 PF07690 Major Facilitator Superfamily LYZ39_12030 PF17768 RecJ OB domain LYZ39_12030 PF01368 DHH family LYZ39_12030 PF02272 DHHA1 domain LYZ39_12040 PF12704 MacB-like periplasmic core domain LYZ39_12040 PF02687 FtsX-like permease family LYZ39_12045 PF00005 ABC transporter LYZ39_12055 PF07715 TonB-dependent Receptor Plug Domain LYZ39_12055 PF00593 TonB dependent receptor LYZ39_12060 PF00672 HAMP domain LYZ39_12060 PF16750 Sensor domain of 2-component histidine kinase LYZ39_12060 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_12060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_12065 PF00486 Transcriptional regulatory protein, C terminal LYZ39_12065 PF00072 Response regulator receiver domain LYZ39_12070 PF07715 TonB-dependent Receptor Plug Domain LYZ39_12070 PF00593 TonB dependent receptor LYZ39_12075 PF01497 Periplasmic binding protein LYZ39_12080 PF01032 FecCD transport family LYZ39_12085 PF01032 FecCD transport family LYZ39_12090 PF00005 ABC transporter LYZ39_12095 PF00149 Calcineurin-like phosphoesterase LYZ39_12095 PF02872 5'-nucleotidase, C-terminal domain LYZ39_12100 PF02110 Hydroxyethylthiazole kinase family LYZ39_12110 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_12115 PF01717 Cobalamin-independent synthase, Catalytic domain LYZ39_12135 PF00753 Metallo-beta-lactamase superfamily LYZ39_12135 PF03772 Competence protein LYZ39_12140 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_12145 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_12150 PF03466 LysR substrate binding domain LYZ39_12150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12160 PF00180 Isocitrate/isopropylmalate dehydrogenase LYZ39_12165 PF03544 Gram-negative bacterial TonB protein C-terminal LYZ39_12170 PF17042 Nucleotide-binding C-terminal domain LYZ39_12170 PF07005 Sugar-binding N-terminal domain LYZ39_12175 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain LYZ39_12175 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain LYZ39_12185 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_12190 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_12195 PF00356 Bacterial regulatory proteins, lacI family LYZ39_12200 PF03797 Autotransporter beta-domain LYZ39_12210 PF08241 Methyltransferase domain LYZ39_12225 PF00072 Response regulator receiver domain LYZ39_12225 PF00196 Bacterial regulatory proteins, luxR family LYZ39_12230 PF05231 MASE1 LYZ39_12230 PF07730 Histidine kinase LYZ39_12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_12235 PF01047 MarR family LYZ39_12240 PF02321 Outer membrane efflux protein LYZ39_12245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_12245 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_12255 PF03861 ANTAR domain LYZ39_12255 PF08376 Nitrate and nitrite sensing LYZ39_12260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LYZ39_12265 PF03793 PASTA domain LYZ39_12265 PF00069 Protein kinase domain LYZ39_12270 PF01226 Formate/nitrite transporter LYZ39_12275 PF13806 Rieske-like [2Fe-2S] domain LYZ39_12280 PF18267 Rubredoxin NAD+ reductase C-terminal domain LYZ39_12280 PF04324 BFD-like [2Fe-2S] binding domain LYZ39_12280 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LYZ39_12280 PF13806 Rieske-like [2Fe-2S] domain LYZ39_12280 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LYZ39_12280 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_12285 PF03466 LysR substrate binding domain LYZ39_12285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12290 PF17761 DUF1016 N-terminal domain LYZ39_12290 PF06250 YhcG PDDEXK nuclease domain LYZ39_12295 PF05199 GMC oxidoreductase LYZ39_12295 PF00732 GMC oxidoreductase LYZ39_12305 PF12697 Alpha/beta hydrolase family LYZ39_12310 PF02811 PHP domain LYZ39_12315 PF03449 Transcription elongation factor, N-terminal LYZ39_12315 PF01272 Transcription elongation factor, GreA/GreB, C-term LYZ39_12320 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_12325 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LYZ39_12325 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_12335 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LYZ39_12335 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LYZ39_12335 PF02769 AIR synthase related protein, C-terminal domain LYZ39_12340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12340 PF03466 LysR substrate binding domain LYZ39_12360 PF00171 Aldehyde dehydrogenase family LYZ39_12365 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_12365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_12370 PF00672 HAMP domain LYZ39_12370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_12370 PF02203 Tar ligand binding domain homologue LYZ39_12375 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_12400 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_12410 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LYZ39_12415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LYZ39_12420 PF04264 YceI-like domain LYZ39_12430 PF00211 Adenylate and Guanylate cyclase catalytic domain LYZ39_12435 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LYZ39_12445 PF00440 Bacterial regulatory proteins, tetR family LYZ39_12470 PF12833 Helix-turn-helix domain LYZ39_12475 PF00857 Isochorismatase family LYZ39_12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12525 PF03466 LysR substrate binding domain LYZ39_12530 PF00107 Zinc-binding dehydrogenase LYZ39_12530 PF16884 N-terminal domain of oxidoreductase LYZ39_12595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_12600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_12600 PF00005 ABC transporter LYZ39_12605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_12605 PF00005 ABC transporter LYZ39_12610 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_12610 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_12615 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_12620 PF13454 FAD-NAD(P)-binding LYZ39_12625 PF03466 LysR substrate binding domain LYZ39_12625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12630 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_12650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LYZ39_12650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_12655 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_12660 PF03466 LysR substrate binding domain LYZ39_12660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12720 PF00478 IMP dehydrogenase / GMP reductase domain LYZ39_12720 PF00571 CBS domain LYZ39_12725 PF00117 Glutamine amidotransferase class-I LYZ39_12725 PF00958 GMP synthase C terminal domain LYZ39_12725 PF02540 NAD synthase LYZ39_12735 PF01022 Bacterial regulatory protein, arsR family LYZ39_12745 PF13657 HipA N-terminal domain LYZ39_12745 PF07804 HipA-like C-terminal domain LYZ39_12755 PF01037 Lrp/AsnC ligand binding domain LYZ39_12755 PF13404 AsnC-type helix-turn-helix domain LYZ39_12760 PF03328 HpcH/HpaI aldolase/citrate lyase family LYZ39_12765 PF00155 Aminotransferase class I and II LYZ39_12770 PF01546 Peptidase family M20/M25/M40 LYZ39_12770 PF07687 Peptidase dimerisation domain LYZ39_12775 PF07690 Major Facilitator Superfamily LYZ39_12785 PF01636 Phosphotransferase enzyme family LYZ39_12795 PF01791 DeoC/LacD family aldolase LYZ39_12800 PF00248 Aldo/keto reductase family LYZ39_12805 PF02653 Branched-chain amino acid transport system / permease component LYZ39_12810 PF00005 ABC transporter LYZ39_12820 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LYZ39_12820 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LYZ39_12825 PF01266 FAD dependent oxidoreductase LYZ39_12825 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LYZ39_12830 PF00392 Bacterial regulatory proteins, gntR family LYZ39_12830 PF07702 UTRA domain LYZ39_12840 PF13618 Gluconate 2-dehydrogenase subunit 3 LYZ39_12845 PF05199 GMC oxidoreductase LYZ39_12845 PF00732 GMC oxidoreductase LYZ39_12850 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LYZ39_12850 PF00034 Cytochrome c LYZ39_12855 PF18081 Fanconi anemia-associated nuclease SAP domain LYZ39_12855 PF08774 VRR-NUC domain LYZ39_12860 PF06733 DEAD_2 LYZ39_12860 PF13307 Helicase C-terminal domain LYZ39_12870 PF07690 Major Facilitator Superfamily LYZ39_12875 PF03466 LysR substrate binding domain LYZ39_12875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12880 PF01425 Amidase LYZ39_12885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_12885 PF00672 HAMP domain LYZ39_12885 PF12729 Four helix bundle sensory module for signal transduction LYZ39_12895 PF01739 CheR methyltransferase, SAM binding domain LYZ39_12905 PF00072 Response regulator receiver domain LYZ39_12905 PF01627 Hpt domain LYZ39_12905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_12905 PF01584 CheW-like domain LYZ39_12910 PF00072 Response regulator receiver domain LYZ39_12910 PF01339 CheB methylesterase LYZ39_12915 PF00360 Phytochrome region LYZ39_12915 PF00563 EAL domain LYZ39_12915 PF01590 GAF domain LYZ39_12915 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_12920 PF01037 Lrp/AsnC ligand binding domain LYZ39_12925 PF01053 Cys/Met metabolism PLP-dependent enzyme LYZ39_12930 PF07690 Major Facilitator Superfamily LYZ39_12935 PF03466 LysR substrate binding domain LYZ39_12935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12945 PF07687 Peptidase dimerisation domain LYZ39_12945 PF01546 Peptidase family M20/M25/M40 LYZ39_12950 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_12955 PF03466 LysR substrate binding domain LYZ39_12955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12960 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_12965 PF13193 AMP-binding enzyme C-terminal domain LYZ39_12965 PF00501 AMP-binding enzyme LYZ39_12970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_12970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_12970 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_12975 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_12975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_12975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_12980 PF00108 Thiolase, N-terminal domain LYZ39_12980 PF02803 Thiolase, C-terminal domain LYZ39_12985 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_12985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_12985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_12990 PF03466 LysR substrate binding domain LYZ39_12990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_12995 PF01594 AI-2E family transporter LYZ39_13005 PF04286 Protein of unknown function (DUF445) LYZ39_13010 PF00080 Copper/zinc superoxide dismutase (SODC) LYZ39_13015 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_13015 PF13417 Glutathione S-transferase, N-terminal domain LYZ39_13025 PF06610 L-alanine exporter LYZ39_13045 PF01223 DNA/RNA non-specific endonuclease LYZ39_13060 PF00557 Metallopeptidase family M24 LYZ39_13075 PF00691 OmpA family LYZ39_13090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_13090 PF03466 LysR substrate binding domain LYZ39_13100 PF00486 Transcriptional regulatory protein, C terminal LYZ39_13100 PF00072 Response regulator receiver domain LYZ39_13105 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_13105 PF08521 Two-component sensor kinase N-terminal LYZ39_13105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_13125 PF00593 TonB dependent receptor LYZ39_13125 PF07715 TonB-dependent Receptor Plug Domain LYZ39_13125 PF07660 Secretin and TonB N terminus short domain LYZ39_13130 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_13140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_13155 PF01047 MarR family LYZ39_13165 PF10127 RNA repair pathway DNA polymerase beta family LYZ39_13175 PF03466 LysR substrate binding domain LYZ39_13175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_13190 PF03466 LysR substrate binding domain LYZ39_13190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_13200 PF13419 Haloacid dehalogenase-like hydrolase LYZ39_13205 PF00892 EamA-like transporter family LYZ39_13215 PF08281 Sigma-70, region 4 LYZ39_13215 PF04542 Sigma-70 region 2 LYZ39_13225 PF03795 YCII-related domain LYZ39_13235 PF03795 YCII-related domain LYZ39_13240 PF09856 Predicted transcriptional regulator (DUF2083) LYZ39_13240 PF06114 IrrE N-terminal-like domain LYZ39_13240 PF01381 Helix-turn-helix LYZ39_13250 PF05736 OprF membrane domain LYZ39_13250 PF00691 OmpA family LYZ39_13255 PF01618 MotA/TolQ/ExbB proton channel family LYZ39_13270 PF02311 AraC-like ligand binding domain LYZ39_13270 PF12833 Helix-turn-helix domain LYZ39_13280 PF04463 Protein of unknown function (DUF523) LYZ39_13290 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_13300 PF00440 Bacterial regulatory proteins, tetR family LYZ39_13310 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_13315 PF00924 Mechanosensitive ion channel LYZ39_13320 PF07687 Peptidase dimerisation domain LYZ39_13320 PF01546 Peptidase family M20/M25/M40 LYZ39_13325 PF00005 ABC transporter LYZ39_13325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_13330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_13330 PF00005 ABC transporter LYZ39_13335 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_13335 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_13340 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_13345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_13350 PF07729 FCD domain LYZ39_13350 PF00392 Bacterial regulatory proteins, gntR family LYZ39_13355 PF00266 Aminotransferase class-V LYZ39_13365 PF08281 Sigma-70, region 4 LYZ39_13365 PF04542 Sigma-70 region 2 LYZ39_13380 PF00248 Aldo/keto reductase family LYZ39_13390 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_13390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_13395 PF00873 AcrB/AcrD/AcrF family LYZ39_13400 PF02321 Outer membrane efflux protein LYZ39_13405 PF00083 Sugar (and other) transporter LYZ39_13410 PF00732 GMC oxidoreductase LYZ39_13410 PF05199 GMC oxidoreductase LYZ39_13415 PF09339 IclR helix-turn-helix domain LYZ39_13415 PF01614 Bacterial transcriptional regulator LYZ39_13420 PF12728 Helix-turn-helix domain LYZ39_13440 PF00149 Calcineurin-like phosphoesterase LYZ39_13445 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_13450 PF07687 Peptidase dimerisation domain LYZ39_13450 PF01546 Peptidase family M20/M25/M40 LYZ39_13460 PF07690 Major Facilitator Superfamily LYZ39_13465 PF06983 3-demethylubiquinone-9 3-methyltransferase LYZ39_13475 PF02627 Carboxymuconolactone decarboxylase family LYZ39_13500 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_13505 PF07687 Peptidase dimerisation domain LYZ39_13505 PF01546 Peptidase family M20/M25/M40 LYZ39_13510 PF00795 Carbon-nitrogen hydrolase LYZ39_13515 PF07690 Major Facilitator Superfamily LYZ39_13520 PF07687 Peptidase dimerisation domain LYZ39_13520 PF01546 Peptidase family M20/M25/M40 LYZ39_13525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_13525 PF03466 LysR substrate binding domain LYZ39_13540 PF02811 PHP domain LYZ39_13540 PF14579 Helix-hairpin-helix motif LYZ39_13540 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LYZ39_13540 PF07733 Bacterial DNA polymerase III alpha NTPase domain LYZ39_13555 PF00324 Amino acid permease LYZ39_13560 PF02230 Phospholipase/Carboxylesterase LYZ39_13565 PF02321 Outer membrane efflux protein LYZ39_13570 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_13570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_13575 PF07869 Protein of unknown function (DUF1656) LYZ39_13590 PF01242 6-pyruvoyl tetrahydropterin synthase LYZ39_13600 PF00472 RF-1 domain LYZ39_13615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LYZ39_13645 PF04073 Aminoacyl-tRNA editing domain LYZ39_13655 PF02321 Outer membrane efflux protein LYZ39_13665 PF00005 ABC transporter LYZ39_13675 PF08361 MAATS-type transcriptional repressor, C-terminal region LYZ39_13675 PF00440 Bacterial regulatory proteins, tetR family LYZ39_13680 PF16884 N-terminal domain of oxidoreductase LYZ39_13680 PF00107 Zinc-binding dehydrogenase LYZ39_13690 PF00072 Response regulator receiver domain LYZ39_13690 PF01966 HD domain LYZ39_13695 PF01266 FAD dependent oxidoreductase LYZ39_13695 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LYZ39_13700 PF00455 DeoR C terminal sensor domain LYZ39_13700 PF08220 DeoR-like helix-turn-helix domain LYZ39_13705 PF00005 ABC transporter LYZ39_13705 PF17912 MalK OB fold domain LYZ39_13710 PF08402 TOBE domain LYZ39_13710 PF00005 ABC transporter LYZ39_13715 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_13720 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_13745 PF13185 GAF domain LYZ39_13745 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_13750 PF13192 Thioredoxin domain LYZ39_13750 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_13755 PF00723 Glycosyl hydrolases family 15 LYZ39_13760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_13760 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_13760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_13800 PF01037 Lrp/AsnC ligand binding domain LYZ39_13805 PF01266 FAD dependent oxidoreductase LYZ39_13810 PF12320 Type 5 capsule protein repressor C-terminal domain LYZ39_13810 PF00149 Calcineurin-like phosphoesterase LYZ39_13830 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_13835 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LYZ39_13835 PF00361 Proton-conducting membrane transporter LYZ39_13835 PF13244 Domain of unknown function (DUF4040) LYZ39_13835 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LYZ39_13840 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LYZ39_13845 PF00361 Proton-conducting membrane transporter LYZ39_13850 PF01899 Na+/H+ ion antiporter subunit LYZ39_13855 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LYZ39_13875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LYZ39_13880 PF17676 LD-carboxypeptidase C-terminal domain LYZ39_13880 PF02016 LD-carboxypeptidase N-terminal domain LYZ39_13885 PF00005 ABC transporter LYZ39_13885 PF12848 ABC transporter LYZ39_13890 PF07690 Major Facilitator Superfamily LYZ39_13895 PF00005 ABC transporter LYZ39_13915 PF01205 Uncharacterized protein family UPF0029 LYZ39_13920 PF00085 Thioredoxin LYZ39_13925 PF00296 Luciferase-like monooxygenase LYZ39_13935 PF00860 Permease family LYZ39_13940 PF00814 Glycoprotease family LYZ39_13945 PF02660 Glycerol-3-phosphate acyltransferase LYZ39_13950 PF01975 Survival protein SurE LYZ39_13960 PF01476 LysM domain LYZ39_13960 PF01551 Peptidase family M23 LYZ39_13980 PF00082 Subtilase family LYZ39_13980 PF12951 Passenger-associated-transport-repeat LYZ39_13980 PF03797 Autotransporter beta-domain LYZ39_13985 PF05958 tRNA (Uracil-5-)-methyltransferase LYZ39_13990 PF00376 MerR family regulatory protein LYZ39_13990 PF09278 MerR, DNA binding LYZ39_13995 PF00403 Heavy-metal-associated domain LYZ39_14005 PF00462 Glutaredoxin LYZ39_14005 PF08534 Redoxin LYZ39_14010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LYZ39_14010 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_14015 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LYZ39_14020 PF03009 Glycerophosphoryl diester phosphodiesterase family LYZ39_14025 PF07687 Peptidase dimerisation domain LYZ39_14025 PF01546 Peptidase family M20/M25/M40 LYZ39_14030 PF13145 PPIC-type PPIASE domain LYZ39_14035 PF13472 GDSL-like Lipase/Acylhydrolase family LYZ39_14040 PF00005 ABC transporter LYZ39_14050 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_14055 PF08402 TOBE domain LYZ39_14055 PF00005 ABC transporter LYZ39_14060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14060 PF03466 LysR substrate binding domain LYZ39_14075 PF12241 Trans-2-enoyl-CoA reductase catalytic region LYZ39_14075 PF07055 Enoyl reductase FAD binding domain LYZ39_14075 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LYZ39_14085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14085 PF03466 LysR substrate binding domain LYZ39_14095 PF01425 Amidase LYZ39_14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14100 PF03466 LysR substrate binding domain LYZ39_14105 PF07286 Protein of unknown function (DUF1445) LYZ39_14115 PF02653 Branched-chain amino acid transport system / permease component LYZ39_14125 PF00005 ABC transporter LYZ39_14125 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_14130 PF00005 ABC transporter LYZ39_14140 PF13609 Gram-negative porin LYZ39_14145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_14160 PF00293 NUDIX domain LYZ39_14160 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LYZ39_14160 PF09297 NADH pyrophosphatase zinc ribbon domain LYZ39_14170 PF01968 Hydantoinase/oxoprolinase LYZ39_14170 PF05378 Hydantoinase/oxoprolinase N-terminal region LYZ39_14180 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_14185 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_14190 PF00005 ABC transporter LYZ39_14195 PF04607 Region found in RelA / SpoT proteins LYZ39_14195 PF02824 TGS domain LYZ39_14195 PF13291 ACT domain LYZ39_14200 PF01192 RNA polymerase Rpb6 LYZ39_14205 PF00625 Guanylate kinase LYZ39_14215 PF00877 NlpC/P60 family LYZ39_14220 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LYZ39_14220 PF01048 Phosphorylase superfamily LYZ39_14225 PF00324 Amino acid permease LYZ39_14230 PF01266 FAD dependent oxidoreductase LYZ39_14235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14235 PF03466 LysR substrate binding domain LYZ39_14240 PF14552 Tautomerase enzyme LYZ39_14245 PF08340 Domain of unknown function (DUF1732) LYZ39_14245 PF03755 YicC-like family, N-terminal region LYZ39_14250 PF01138 3' exoribonuclease family, domain 1 LYZ39_14250 PF03725 3' exoribonuclease family, domain 2 LYZ39_14255 PF00171 Aldehyde dehydrogenase family LYZ39_14260 PF00465 Iron-containing alcohol dehydrogenase LYZ39_14265 PF00356 Bacterial regulatory proteins, lacI family LYZ39_14270 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_14275 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_14275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_14285 PF02627 Carboxymuconolactone decarboxylase family LYZ39_14290 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_14300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_14300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_14300 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_14310 PF12792 CSS motif domain associated with EAL LYZ39_14310 PF00563 EAL domain LYZ39_14315 PF01725 Ham1 family LYZ39_14320 PF06969 HemN C-terminal domain LYZ39_14320 PF04055 Radical SAM superfamily LYZ39_14325 PF00120 Glutamine synthetase, catalytic domain LYZ39_14325 PF03951 Glutamine synthetase, beta-Grasp domain LYZ39_14330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_14330 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_14330 PF00989 PAS fold LYZ39_14335 PF02954 Bacterial regulatory protein, Fis family LYZ39_14335 PF00072 Response regulator receiver domain LYZ39_14335 PF00158 Sigma-54 interaction domain LYZ39_14340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14340 PF03466 LysR substrate binding domain LYZ39_14345 PF17954 Quercetinase C-terminal cupin domain LYZ39_14345 PF02678 Pirin LYZ39_14350 PF05726 Pirin C-terminal cupin domain LYZ39_14350 PF02678 Pirin LYZ39_14360 PF00561 alpha/beta hydrolase fold LYZ39_14365 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_14370 PF08402 TOBE domain LYZ39_14370 PF00005 ABC transporter LYZ39_14375 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_14380 PF13416 Bacterial extracellular solute-binding protein LYZ39_14385 PF00175 Oxidoreductase NAD-binding domain LYZ39_14385 PF00970 Oxidoreductase FAD-binding domain LYZ39_14400 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_14415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14415 PF03466 LysR substrate binding domain LYZ39_14420 PF01042 Endoribonuclease L-PSP LYZ39_14425 PF00270 DEAD/DEAH box helicase LYZ39_14425 PF00271 Helicase conserved C-terminal domain LYZ39_14425 PF17191 RecG wedge domain LYZ39_14430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14430 PF03466 LysR substrate binding domain LYZ39_14435 PF00210 Ferritin-like domain LYZ39_14450 PF00535 Glycosyl transferase family 2 LYZ39_14460 PF00005 ABC transporter LYZ39_14470 PF00534 Glycosyl transferases group 1 LYZ39_14475 PF02563 Polysaccharide biosynthesis/export protein LYZ39_14480 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LYZ39_14480 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LYZ39_14480 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LYZ39_14485 PF05159 Capsule polysaccharide biosynthesis protein LYZ39_14490 PF05159 Capsule polysaccharide biosynthesis protein LYZ39_14495 PF00106 short chain dehydrogenase LYZ39_14510 PF00155 Aminotransferase class I and II LYZ39_14515 PF14765 Polyketide synthase dehydratase LYZ39_14515 PF08659 KR domain LYZ39_14515 PF00550 Phosphopantetheine attachment site LYZ39_14515 PF00109 Beta-ketoacyl synthase, N-terminal domain LYZ39_14515 PF16197 Ketoacyl-synthetase C-terminal extension LYZ39_14515 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_14515 PF00698 Acyl transferase domain LYZ39_14515 PF02801 Beta-ketoacyl synthase, C-terminal domain LYZ39_14525 PF13458 Periplasmic binding protein LYZ39_14530 PF17912 MalK OB fold domain LYZ39_14530 PF00005 ABC transporter LYZ39_14535 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_14540 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_14545 PF13416 Bacterial extracellular solute-binding protein LYZ39_14550 PF03807 NADP oxidoreductase coenzyme F420-dependent LYZ39_14550 PF14748 Pyrroline-5-carboxylate reductase dimerisation LYZ39_14555 PF02592 Putative vitamin uptake transporter LYZ39_14560 PF13458 Periplasmic binding protein LYZ39_14565 PF02653 Branched-chain amino acid transport system / permease component LYZ39_14570 PF02653 Branched-chain amino acid transport system / permease component LYZ39_14570 PF11862 Domain of unknown function (DUF3382) LYZ39_14575 PF00005 ABC transporter LYZ39_14575 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_14580 PF00005 ABC transporter LYZ39_14585 PF01177 Asp/Glu/Hydantoin racemase LYZ39_14590 PF07969 Amidohydrolase family LYZ39_14595 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_14600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14600 PF03466 LysR substrate binding domain LYZ39_14605 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_14605 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_14610 PF07995 Glucose / Sorbosone dehydrogenase LYZ39_14620 PF00892 EamA-like transporter family LYZ39_14625 PF04241 Protein of unknown function (DUF423) LYZ39_14635 PF08808 RES domain LYZ39_14640 PF00107 Zinc-binding dehydrogenase LYZ39_14640 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_14655 PF00491 Arginase family LYZ39_14660 PF00202 Aminotransferase class-III LYZ39_14665 PF03180 NLPA lipoprotein LYZ39_14670 PF07690 Major Facilitator Superfamily LYZ39_14680 PF00149 Calcineurin-like phosphoesterase LYZ39_14685 PF01070 FMN-dependent dehydrogenase LYZ39_14690 PF02666 Phosphatidylserine decarboxylase LYZ39_14695 PF12848 ABC transporter LYZ39_14695 PF00005 ABC transporter LYZ39_14700 PF03328 HpcH/HpaI aldolase/citrate lyase family LYZ39_14705 PF00486 Transcriptional regulatory protein, C terminal LYZ39_14705 PF00072 Response regulator receiver domain LYZ39_14720 PF01266 FAD dependent oxidoreductase LYZ39_14725 PF00793 DAHP synthetase I family LYZ39_14730 PF00563 EAL domain LYZ39_14730 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_14730 PF03707 Bacterial signalling protein N terminal repeat LYZ39_14745 PF03466 LysR substrate binding domain LYZ39_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_14750 PF07690 Major Facilitator Superfamily LYZ39_14760 PF08448 PAS fold LYZ39_14760 PF13188 PAS domain LYZ39_14760 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_14760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_14760 PF00072 Response regulator receiver domain LYZ39_14770 PF00309 Sigma-54 factor, Activator interacting domain (AID) LYZ39_14770 PF04963 Sigma-54 factor, core binding domain LYZ39_14770 PF04552 Sigma-54, DNA binding domain LYZ39_14775 PF02954 Bacterial regulatory protein, Fis family LYZ39_14775 PF00158 Sigma-54 interaction domain LYZ39_14780 PF00158 Sigma-54 interaction domain LYZ39_14780 PF00072 Response regulator receiver domain LYZ39_14780 PF02954 Bacterial regulatory protein, Fis family LYZ39_14845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LYZ39_14845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_14850 PF00582 Universal stress protein family LYZ39_14855 PF12805 FUSC-like inner membrane protein yccS LYZ39_14860 PF00563 EAL domain LYZ39_14860 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_14860 PF17154 Gammaproteobacterial periplasmic sensor domain LYZ39_14860 PF00672 HAMP domain LYZ39_14870 PF00128 Alpha amylase, catalytic domain LYZ39_14875 PF02446 4-alpha-glucanotransferase LYZ39_14880 PF11941 Domain of unknown function (DUF3459) LYZ39_14880 PF00128 Alpha amylase, catalytic domain LYZ39_14880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LYZ39_14885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LYZ39_14885 PF00128 Alpha amylase, catalytic domain LYZ39_14890 PF02806 Alpha amylase, C-terminal all-beta domain LYZ39_14890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LYZ39_14890 PF00128 Alpha amylase, catalytic domain LYZ39_14895 PF00128 Alpha amylase, catalytic domain LYZ39_14895 PF16657 Maltogenic Amylase, C-terminal domain LYZ39_14900 PF00128 Alpha amylase, catalytic domain LYZ39_14900 PF11896 Domain of unknown function (DUF3416) LYZ39_14905 PF08323 Starch synthase catalytic domain LYZ39_14905 PF00534 Glycosyl transferases group 1 LYZ39_14910 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_14910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_14910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_14955 PF13091 PLD-like domain LYZ39_14960 PF03372 Endonuclease/Exonuclease/phosphatase family LYZ39_14965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_14970 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_14975 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_14975 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_14980 PF00005 ABC transporter LYZ39_14980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_14990 PF00593 TonB dependent receptor LYZ39_14990 PF07715 TonB-dependent Receptor Plug Domain LYZ39_15000 PF02308 MgtC family LYZ39_15010 PF00034 Cytochrome c LYZ39_15015 PF05199 GMC oxidoreductase LYZ39_15015 PF00732 GMC oxidoreductase LYZ39_15020 PF13618 Gluconate 2-dehydrogenase subunit 3 LYZ39_15030 PF03741 Integral membrane protein TerC family LYZ39_15030 PF03471 Transporter associated domain LYZ39_15045 PF03781 Sulfatase-modifying factor enzyme 1 LYZ39_15050 PF07726 ATPase family associated with various cellular activities (AAA) LYZ39_15050 PF17863 AAA lid domain LYZ39_15070 PF07584 Aerotolerance regulator N-terminal LYZ39_15070 PF00092 von Willebrand factor type A domain LYZ39_15085 PF00884 Sulfatase LYZ39_15105 PF02525 Flavodoxin-like fold LYZ39_15115 PF00392 Bacterial regulatory proteins, gntR family LYZ39_15115 PF00155 Aminotransferase class I and II LYZ39_15130 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_15135 PF07690 Major Facilitator Superfamily LYZ39_15145 PF01970 Tripartite tricarboxylate transporter TctA family LYZ39_15155 PF07690 Major Facilitator Superfamily LYZ39_15160 PF01047 MarR family LYZ39_15170 PF00440 Bacterial regulatory proteins, tetR family LYZ39_15170 PF16925 Tetracyclin repressor-like, C-terminal domain LYZ39_15175 PF00593 TonB dependent receptor LYZ39_15175 PF07715 TonB-dependent Receptor Plug Domain LYZ39_15180 PF16220 Domain of unknown function (DUF4880) LYZ39_15180 PF04773 FecR protein LYZ39_15195 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_15200 PF08448 PAS fold LYZ39_15200 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_15215 PF03797 Autotransporter beta-domain LYZ39_15220 PF00072 Response regulator receiver domain LYZ39_15220 PF00196 Bacterial regulatory proteins, luxR family LYZ39_15225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_15225 PF09456 RcsC Alpha-Beta-Loop (ABL) LYZ39_15225 PF00072 Response regulator receiver domain LYZ39_15225 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_15230 PF00563 EAL domain LYZ39_15230 PF12792 CSS motif domain associated with EAL LYZ39_15235 PF09456 RcsC Alpha-Beta-Loop (ABL) LYZ39_15235 PF00072 Response regulator receiver domain LYZ39_15235 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_15235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_15250 PF01594 AI-2E family transporter LYZ39_15260 PF02016 LD-carboxypeptidase N-terminal domain LYZ39_15260 PF17676 LD-carboxypeptidase C-terminal domain LYZ39_15275 PF02082 Transcriptional regulator LYZ39_15285 PF13520 Amino acid permease LYZ39_15295 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_15305 PF04115 Ureidoglycolate lyase LYZ39_15325 PF00593 TonB dependent receptor LYZ39_15325 PF07660 Secretin and TonB N terminus short domain LYZ39_15325 PF07715 TonB-dependent Receptor Plug Domain LYZ39_15345 PF01464 Transglycosylase SLT domain LYZ39_15345 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_15350 PF00884 Sulfatase LYZ39_15355 PF03358 NADPH-dependent FMN reductase LYZ39_15365 PF01758 Sodium Bile acid symporter family LYZ39_15375 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_15380 PF00465 Iron-containing alcohol dehydrogenase LYZ39_15385 PF04303 PrpF protein LYZ39_15390 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_15395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_15395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_15395 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_15410 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_15415 PF03972 MmgE/PrpD family LYZ39_15420 PF02515 CoA-transferase family III LYZ39_15425 PF02515 CoA-transferase family III LYZ39_15430 PF09339 IclR helix-turn-helix domain LYZ39_15430 PF01614 Bacterial transcriptional regulator LYZ39_15440 PF01740 STAS domain LYZ39_15440 PF00916 Sulfate permease family LYZ39_15445 PF03466 LysR substrate binding domain LYZ39_15445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_15465 PF12146 Serine aminopeptidase, S33 LYZ39_15475 PF01979 Amidohydrolase family LYZ39_15485 PF03062 MBOAT, membrane-bound O-acyltransferase family LYZ39_15520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LYZ39_15520 PF13632 Glycosyl transferase family group 2 LYZ39_15530 PF02350 UDP-N-acetylglucosamine 2-epimerase LYZ39_15550 PF02040 Arsenical pump membrane protein LYZ39_15555 PF02374 Anion-transporting ATPase LYZ39_15560 PF06953 Arsenical resistance operon trans-acting repressor ArsD LYZ39_15565 PF01451 Low molecular weight phosphotyrosine protein phosphatase LYZ39_15575 PF00593 TonB dependent receptor LYZ39_15575 PF07715 TonB-dependent Receptor Plug Domain LYZ39_15580 PF00392 Bacterial regulatory proteins, gntR family LYZ39_15580 PF07729 FCD domain LYZ39_15585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_15590 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_15595 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_15595 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_15600 PF00005 ABC transporter LYZ39_15600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_15605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_15605 PF00005 ABC transporter LYZ39_15615 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_15615 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LYZ39_15625 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_15625 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LYZ39_15635 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_15635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_15635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_15640 PF07687 Peptidase dimerisation domain LYZ39_15640 PF01546 Peptidase family M20/M25/M40 LYZ39_15645 PF00171 Aldehyde dehydrogenase family LYZ39_15650 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_15655 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_15660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_15660 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_15660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_15665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_15665 PF03466 LysR substrate binding domain LYZ39_15680 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_15685 PF08450 SMP-30/Gluconolactonase/LRE-like region LYZ39_15690 PF08666 SAF domain LYZ39_15690 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LYZ39_15695 PF00701 Dihydrodipicolinate synthetase family LYZ39_15700 PF00171 Aldehyde dehydrogenase family LYZ39_15715 PF02801 Beta-ketoacyl synthase, C-terminal domain LYZ39_15715 PF08659 KR domain LYZ39_15715 PF00550 Phosphopantetheine attachment site LYZ39_15715 PF14765 Polyketide synthase dehydratase LYZ39_15715 PF00107 Zinc-binding dehydrogenase LYZ39_15715 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_15715 PF00698 Acyl transferase domain LYZ39_15715 PF16197 Ketoacyl-synthetase C-terminal extension LYZ39_15715 PF00109 Beta-ketoacyl synthase, N-terminal domain LYZ39_15725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_15730 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_15735 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_15735 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_15740 PF00501 AMP-binding enzyme LYZ39_15740 PF13193 AMP-binding enzyme C-terminal domain LYZ39_15755 PF00005 ABC transporter LYZ39_15760 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_15770 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system LYZ39_15780 PF13609 Gram-negative porin LYZ39_15795 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_15795 PF00585 C-terminal regulatory domain of Threonine dehydratase LYZ39_15800 PF00486 Transcriptional regulatory protein, C terminal LYZ39_15800 PF00072 Response regulator receiver domain LYZ39_15805 PF03971 Monomeric isocitrate dehydrogenase LYZ39_15810 PF03649 Uncharacterised protein family (UPF0014) LYZ39_15815 PF00005 ABC transporter LYZ39_15820 PF13533 Biotin-lipoyl like LYZ39_15825 PF00873 AcrB/AcrD/AcrF family LYZ39_15830 PF02321 Outer membrane efflux protein LYZ39_15835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_15835 PF03466 LysR substrate binding domain LYZ39_15840 PF00005 ABC transporter LYZ39_15845 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_15850 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_15855 PF08534 Redoxin LYZ39_15865 PF01118 Semialdehyde dehydrogenase, NAD binding domain LYZ39_15870 PF03466 LysR substrate binding domain LYZ39_15870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_15875 PF00654 Voltage gated chloride channel LYZ39_15890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_15890 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_15890 PF08448 PAS fold LYZ39_15890 PF13426 PAS domain LYZ39_15890 PF00072 Response regulator receiver domain LYZ39_15895 PF00196 Bacterial regulatory proteins, luxR family LYZ39_15895 PF00072 Response regulator receiver domain LYZ39_15905 PF12951 Passenger-associated-transport-repeat LYZ39_15925 PF00581 Rhodanese-like domain LYZ39_15935 PF00561 alpha/beta hydrolase fold LYZ39_15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_15945 PF03466 LysR substrate binding domain LYZ39_15955 PF01053 Cys/Met metabolism PLP-dependent enzyme LYZ39_15965 PF00005 ABC transporter LYZ39_15975 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_15980 PF00155 Aminotransferase class I and II LYZ39_15985 PF02913 FAD linked oxidases, C-terminal domain LYZ39_15985 PF01565 FAD binding domain LYZ39_15990 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_15995 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_16000 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_16005 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LYZ39_16010 PF00561 alpha/beta hydrolase fold LYZ39_16015 PF01470 Pyroglutamyl peptidase LYZ39_16020 PF03466 LysR substrate binding domain LYZ39_16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_16035 PF01070 FMN-dependent dehydrogenase LYZ39_16045 PF03737 Aldolase/RraA LYZ39_16050 PF01842 ACT domain LYZ39_16050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_16050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LYZ39_16055 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_16090 PF00857 Isochorismatase family LYZ39_16115 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_16120 PF12833 Helix-turn-helix domain LYZ39_16125 PF00585 C-terminal regulatory domain of Threonine dehydratase LYZ39_16125 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_16130 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LYZ39_16135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_16135 PF03466 LysR substrate binding domain LYZ39_16140 PF00005 ABC transporter LYZ39_16145 PF01614 Bacterial transcriptional regulator LYZ39_16145 PF09339 IclR helix-turn-helix domain LYZ39_16155 PF07690 Major Facilitator Superfamily LYZ39_16165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_16165 PF00072 Response regulator receiver domain LYZ39_16165 PF13426 PAS domain LYZ39_16185 PF01569 PAP2 superfamily LYZ39_16215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_16215 PF03466 LysR substrate binding domain LYZ39_16220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_16220 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_16225 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_16240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_16240 PF03466 LysR substrate binding domain LYZ39_16245 PF02913 FAD linked oxidases, C-terminal domain LYZ39_16245 PF01565 FAD binding domain LYZ39_16245 PF13183 4Fe-4S dicluster domain LYZ39_16255 PF00701 Dihydrodipicolinate synthetase family LYZ39_16265 PF17158 Membrane-associated sensor, integral membrane domain LYZ39_16265 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_16280 PF00857 Isochorismatase family LYZ39_16295 PF00083 Sugar (and other) transporter LYZ39_16295 PF08946 Osmosensory transporter coiled coil LYZ39_16300 PF01042 Endoribonuclease L-PSP LYZ39_16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_16305 PF03466 LysR substrate binding domain LYZ39_16310 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_16310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_16310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_16315 PF13380 CoA binding domain LYZ39_16315 PF13607 Succinyl-CoA ligase like flavodoxin domain LYZ39_16315 PF00583 Acetyltransferase (GNAT) family LYZ39_16325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_16325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_16330 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_16335 PF00171 Aldehyde dehydrogenase family LYZ39_16355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_16355 PF03466 LysR substrate binding domain LYZ39_16365 PF03466 LysR substrate binding domain LYZ39_16365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_16370 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LYZ39_16370 PF13378 Enolase C-terminal domain-like LYZ39_16375 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_16390 PF10518 TAT (twin-arginine translocation) pathway signal sequence LYZ39_16390 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding LYZ39_16390 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_16395 PF00174 Oxidoreductase molybdopterin binding domain LYZ39_16400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LYZ39_16425 PF00085 Thioredoxin LYZ39_16430 PF02872 5'-nucleotidase, C-terminal domain LYZ39_16430 PF00149 Calcineurin-like phosphoesterase LYZ39_16445 PF00106 short chain dehydrogenase LYZ39_16450 PF06719 AraC-type transcriptional regulator N-terminus LYZ39_16450 PF12833 Helix-turn-helix domain LYZ39_16465 PF07715 TonB-dependent Receptor Plug Domain LYZ39_16465 PF07660 Secretin and TonB N terminus short domain LYZ39_16465 PF00593 TonB dependent receptor LYZ39_16470 PF11806 Domain of unknown function (DUF3327) LYZ39_16470 PF00756 Putative esterase LYZ39_16490 PF07715 TonB-dependent Receptor Plug Domain LYZ39_16490 PF00593 TonB dependent receptor LYZ39_16505 PF07715 TonB-dependent Receptor Plug Domain LYZ39_16505 PF00593 TonB dependent receptor LYZ39_16510 PF12833 Helix-turn-helix domain LYZ39_16525 PF14864 Alkyl sulfatase C-terminal LYZ39_16525 PF14863 Alkyl sulfatase dimerisation LYZ39_16525 PF00753 Metallo-beta-lactamase superfamily LYZ39_16530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_16530 PF03466 LysR substrate binding domain LYZ39_16535 PF01042 Endoribonuclease L-PSP LYZ39_16540 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_16540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LYZ39_16550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LYZ39_16555 PF07729 FCD domain LYZ39_16555 PF00392 Bacterial regulatory proteins, gntR family LYZ39_16560 PF00701 Dihydrodipicolinate synthetase family LYZ39_16565 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_16570 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_16575 PF03737 Aldolase/RraA LYZ39_16580 PF00920 Dehydratase family LYZ39_16585 PF07729 FCD domain LYZ39_16585 PF00392 Bacterial regulatory proteins, gntR family LYZ39_16600 PF01053 Cys/Met metabolism PLP-dependent enzyme LYZ39_16610 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_16615 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_16620 PF02036 SCP-2 sterol transfer family LYZ39_16625 PF01136 Peptidase family U32 LYZ39_16630 PF01136 Peptidase family U32 LYZ39_16635 PF00196 Bacterial regulatory proteins, luxR family LYZ39_16635 PF00072 Response regulator receiver domain LYZ39_16640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_16640 PF00672 HAMP domain LYZ39_16640 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LYZ39_16640 PF07730 Histidine kinase LYZ39_16645 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LYZ39_16650 PF00484 Carbonic anhydrase LYZ39_16655 PF06463 Molybdenum Cofactor Synthesis C LYZ39_16655 PF04055 Radical SAM superfamily LYZ39_16660 PF09312 SurA N-terminal domain LYZ39_16660 PF00639 PPIC-type PPIASE domain LYZ39_16665 PF02665 Nitrate reductase gamma subunit LYZ39_16670 PF02613 Nitrate reductase delta subunit LYZ39_16675 PF13247 4Fe-4S dicluster domain LYZ39_16675 PF14711 Respiratory nitrate reductase beta C-terminal LYZ39_16680 PF01568 Molydopterin dinucleotide binding domain LYZ39_16680 PF00384 Molybdopterin oxidoreductase LYZ39_16680 PF14710 Respiratory nitrate reductase alpha N-terminal LYZ39_16685 PF07690 Major Facilitator Superfamily LYZ39_16690 PF07690 Major Facilitator Superfamily LYZ39_16705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_16710 PF00873 AcrB/AcrD/AcrF family LYZ39_16715 PF00873 AcrB/AcrD/AcrF family LYZ39_16730 PF02321 Outer membrane efflux protein LYZ39_16735 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_16735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_16750 PF00199 Catalase LYZ39_16750 PF06628 Catalase-related immune-responsive LYZ39_16750 PF18011 C-terminal domain found in long catalases LYZ39_16770 PF13597 Anaerobic ribonucleoside-triphosphate reductase LYZ39_16770 PF03477 ATP cone domain LYZ39_16785 PF00392 Bacterial regulatory proteins, gntR family LYZ39_16785 PF00155 Aminotransferase class I and II LYZ39_16790 PF00368 Hydroxymethylglutaryl-coenzyme A reductase LYZ39_16805 PF03060 Nitronate monooxygenase LYZ39_16815 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LYZ39_16815 PF00391 PEP-utilising enzyme, mobile domain LYZ39_16820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_16820 PF18698 Histidine kinase sensor domain LYZ39_16820 PF00672 HAMP domain LYZ39_16820 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_16820 PF00989 PAS fold LYZ39_16825 PF00072 Response regulator receiver domain LYZ39_16825 PF00486 Transcriptional regulatory protein, C terminal LYZ39_16830 PF01292 Prokaryotic cytochrome b561 LYZ39_16835 PF00174 Oxidoreductase molybdopterin binding domain LYZ39_16845 PF01641 SelR domain LYZ39_16850 PF01625 Peptide methionine sulfoxide reductase LYZ39_16910 PF04055 Radical SAM superfamily LYZ39_16915 PF12951 Passenger-associated-transport-repeat LYZ39_16925 PF00296 Luciferase-like monooxygenase LYZ39_16930 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_16930 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_16945 PF01209 ubiE/COQ5 methyltransferase family LYZ39_16955 PF07728 AAA domain (dynein-related subfamily) LYZ39_16955 PF12102 Domain of unknown function (DUF3578) LYZ39_16965 PF01555 DNA methylase LYZ39_16965 PF18273 Type III R-M EcoP15I C-terminal domain LYZ39_16975 PF02463 RecF/RecN/SMC N terminal domain LYZ39_17000 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_17005 PF08450 SMP-30/Gluconolactonase/LRE-like region LYZ39_17020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_17020 PF03466 LysR substrate binding domain LYZ39_17050 PF01406 tRNA synthetases class I (C) catalytic domain LYZ39_17060 PF00563 EAL domain LYZ39_17060 PF00360 Phytochrome region LYZ39_17060 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_17060 PF01590 GAF domain LYZ39_17070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_17070 PF03466 LysR substrate binding domain LYZ39_17075 PF00107 Zinc-binding dehydrogenase LYZ39_17075 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_17080 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_17080 PF00107 Zinc-binding dehydrogenase LYZ39_17095 PF10996 Beta-Casp domain LYZ39_17095 PF00753 Metallo-beta-lactamase superfamily LYZ39_17095 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LYZ39_17100 PF03466 LysR substrate binding domain LYZ39_17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_17105 PF01614 Bacterial transcriptional regulator LYZ39_17105 PF09339 IclR helix-turn-helix domain LYZ39_17110 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_17115 PF01220 Dehydroquinase class II LYZ39_17120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LYZ39_17125 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_17130 PF00775 Dioxygenase LYZ39_17130 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LYZ39_17140 PF10397 Adenylosuccinate lyase C-terminus LYZ39_17140 PF00206 Lyase LYZ39_17145 PF00210 Ferritin-like domain LYZ39_17155 PF04328 Selenoprotein, putative LYZ39_17160 PF02554 Carbon starvation protein CstA LYZ39_17160 PF13722 5TM C-terminal transporter carbon starvation CstA LYZ39_17165 PF17200 Single Cache domain 2 LYZ39_17165 PF07730 Histidine kinase LYZ39_17170 PF00072 Response regulator receiver domain LYZ39_17170 PF00196 Bacterial regulatory proteins, luxR family LYZ39_17175 PF01227 GTP cyclohydrolase I LYZ39_17180 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LYZ39_17185 PF00005 ABC transporter LYZ39_17190 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_17195 PF00392 Bacterial regulatory proteins, gntR family LYZ39_17195 PF00155 Aminotransferase class I and II LYZ39_17210 PF02492 CobW/HypB/UreG, nucleotide-binding domain LYZ39_17210 PF07683 Cobalamin synthesis protein cobW C-terminal domain LYZ39_17215 PF01979 Amidohydrolase family LYZ39_17220 PF00005 ABC transporter LYZ39_17220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_17225 PF00005 ABC transporter LYZ39_17225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_17230 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_17230 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_17235 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_17240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_17245 PF01515 Phosphate acetyl/butaryl transferase LYZ39_17250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_17250 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_17250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_17255 PF09339 IclR helix-turn-helix domain LYZ39_17255 PF01614 Bacterial transcriptional regulator LYZ39_17260 PF03880 DbpA RNA binding domain LYZ39_17260 PF00270 DEAD/DEAH box helicase LYZ39_17260 PF00271 Helicase conserved C-terminal domain LYZ39_17280 PF00578 AhpC/TSA family LYZ39_17285 PF02515 CoA-transferase family III LYZ39_17290 PF03441 FAD binding domain of DNA photolyase LYZ39_17290 PF00875 DNA photolyase LYZ39_17295 PF08447 PAS fold LYZ39_17295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_17315 PF00255 Glutathione peroxidase LYZ39_17320 PF01037 Lrp/AsnC ligand binding domain LYZ39_17330 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_17330 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_17345 PF10437 Bacterial lipoate protein ligase C-terminus LYZ39_17345 PF03099 Biotin/lipoate A/B protein ligase family LYZ39_17355 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LYZ39_17355 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LYZ39_17360 PF00491 Arginase family LYZ39_17365 PF00005 ABC transporter LYZ39_17370 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_17375 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_17390 PF01026 TatD related DNase LYZ39_17395 PF12169 DNA polymerase III subunits gamma and tau domain III LYZ39_17400 PF02223 Thymidylate kinase LYZ39_17405 PF02618 YceG-like family LYZ39_17410 PF01571 Aminomethyltransferase folate-binding domain LYZ39_17425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_17425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_17430 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_17435 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_17435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_17435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_17440 PF03658 RnfH family Ubiquitin LYZ39_17445 PF03364 Polyketide cyclase / dehydrase and lipid transport LYZ39_17450 PF01668 SmpB protein LYZ39_17455 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_17460 PF01145 SPFH domain / Band 7 family LYZ39_17470 PF00958 GMP synthase C terminal domain LYZ39_17470 PF00117 Glutamine amidotransferase class-I LYZ39_17475 PF12833 Helix-turn-helix domain LYZ39_17475 PF02805 Metal binding domain of Ada LYZ39_17475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LYZ39_17475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LYZ39_17480 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LYZ39_17480 PF02896 PEP-utilising enzyme, TIM barrel domain LYZ39_17480 PF00391 PEP-utilising enzyme, mobile domain LYZ39_17485 PF03618 Kinase/pyrophosphorylase LYZ39_17495 PF00588 SpoU rRNA Methylase family LYZ39_17495 PF08032 RNA 2'-O ribose methyltransferase substrate binding LYZ39_17500 PF01351 Ribonuclease HII LYZ39_17505 PF02684 Lipid-A-disaccharide synthetase LYZ39_17510 PF00132 Bacterial transferase hexapeptide (six repeats) LYZ39_17510 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LYZ39_17515 PF07977 FabA-like domain LYZ39_17520 PF00132 Bacterial transferase hexapeptide (six repeats) LYZ39_17520 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LYZ39_17525 PF03938 Outer membrane protein (OmpH-like) LYZ39_17530 PF01103 Surface antigen LYZ39_17530 PF07244 Surface antigen variable number repeat LYZ39_17535 PF02163 Peptidase family M50 LYZ39_17535 PF17820 PDZ domain LYZ39_17540 PF13288 DXP reductoisomerase C-terminal domain LYZ39_17540 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LYZ39_17540 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LYZ39_17550 PF01255 Putative undecaprenyl diphosphate synthase LYZ39_17555 PF01765 Ribosome recycling factor LYZ39_17560 PF00696 Amino acid kinase family LYZ39_17565 PF00889 Elongation factor TS LYZ39_17570 PF00318 Ribosomal protein S2 LYZ39_17575 PF00557 Metallopeptidase family M24 LYZ39_17580 PF08335 GlnD PII-uridylyltransferase LYZ39_17580 PF01966 HD domain LYZ39_17580 PF01909 Nucleotidyltransferase domain LYZ39_17590 PF02600 Disulfide bond formation protein DsbB LYZ39_17595 PF01863 Protein of unknown function DUF45 LYZ39_17600 PF00156 Phosphoribosyl transferase domain LYZ39_17605 PF02674 Colicin V production protein LYZ39_17615 PF02875 Mur ligase family, glutamate ligase domain LYZ39_17615 PF08245 Mur ligase middle domain LYZ39_17625 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_17630 PF02515 CoA-transferase family III LYZ39_17635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_17635 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_17635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_17645 PF03646 FlaG protein LYZ39_17650 PF02465 Flagellar hook-associated protein 2 N-terminus LYZ39_17650 PF07195 Flagellar hook-associated protein 2 C-terminus LYZ39_17655 PF02561 Flagellar protein FliS LYZ39_17670 PF01312 FlhB HrpN YscU SpaS Family LYZ39_17680 PF02049 Flagellar hook-basal body complex protein FliE LYZ39_17685 PF08345 Flagellar M-ring protein C-terminal LYZ39_17685 PF01514 Secretory protein of YscJ/FliF family LYZ39_17690 PF14841 FliG middle domain LYZ39_17690 PF01706 FliG C-terminal domain LYZ39_17690 PF14842 FliG N-terminal domain LYZ39_17700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LYZ39_17700 PF18269 T3SS EscN ATPase C-terminal domain LYZ39_17715 PF03748 Flagellar basal body-associated protein FliL LYZ39_17720 PF02154 Flagellar motor switch protein FliM LYZ39_17720 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LYZ39_17725 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LYZ39_17725 PF16973 Flagellar motor switch protein FliN N-terminal LYZ39_17730 PF04347 Flagellar biosynthesis protein, FliO LYZ39_17735 PF00813 FliP family LYZ39_17740 PF01313 Bacterial export proteins, family 3 LYZ39_17745 PF01311 Bacterial export proteins, family 1 LYZ39_17750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_17750 PF08447 PAS fold LYZ39_17755 PF02203 Tar ligand binding domain homologue LYZ39_17755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_17755 PF00672 HAMP domain LYZ39_17765 PF02203 Tar ligand binding domain homologue LYZ39_17765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_17765 PF00672 HAMP domain LYZ39_17770 PF02203 Tar ligand binding domain homologue LYZ39_17770 PF00672 HAMP domain LYZ39_17770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_17775 PF00669 Bacterial flagellin N-terminal helical region LYZ39_17780 PF00460 Flagella basal body rod protein LYZ39_17780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_17785 PF10135 Rod binding protein LYZ39_17785 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LYZ39_17790 PF02119 Flagellar P-ring protein LYZ39_17795 PF02107 Flagellar L-ring protein LYZ39_17800 PF00460 Flagella basal body rod protein LYZ39_17800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_17805 PF00460 Flagella basal body rod protein LYZ39_17805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_17810 PF07559 Flagellar basal body protein FlaE LYZ39_17810 PF00460 Flagella basal body rod protein LYZ39_17810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_17815 PF13861 FlgD Tudor-like domain LYZ39_17815 PF03963 Flagellar hook capping protein - N-terminal region LYZ39_17815 PF13860 FlgD Ig-like domain LYZ39_17820 PF00460 Flagella basal body rod protein LYZ39_17820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LYZ39_17825 PF00460 Flagella basal body rod protein LYZ39_17835 PF04316 Anti-sigma-28 factor, FlgM LYZ39_17845 PF00448 SRP54-type protein, GTPase domain LYZ39_17850 PF00771 FHIPEP family LYZ39_17855 PF01312 FlhB HrpN YscU SpaS Family LYZ39_17860 PF17200 Single Cache domain 2 LYZ39_17860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_17860 PF00672 HAMP domain LYZ39_17865 PF04344 Chemotaxis phosphatase, CheZ LYZ39_17870 PF00072 Response regulator receiver domain LYZ39_17875 PF00072 Response regulator receiver domain LYZ39_17875 PF01339 CheB methylesterase LYZ39_17880 PF03705 CheR methyltransferase, all-alpha domain LYZ39_17880 PF01739 CheR methyltransferase, SAM binding domain LYZ39_17885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_17885 PF02203 Tar ligand binding domain homologue LYZ39_17885 PF00672 HAMP domain LYZ39_17890 PF01584 CheW-like domain LYZ39_17895 PF02895 Signal transducing histidine kinase, homodimeric domain LYZ39_17895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_17895 PF01627 Hpt domain LYZ39_17895 PF01584 CheW-like domain LYZ39_17895 PF09078 CheY binding LYZ39_17900 PF00072 Response regulator receiver domain LYZ39_17905 PF13677 Membrane MotB of proton-channel complex MotA/MotB LYZ39_17905 PF00691 OmpA family LYZ39_17910 PF01618 MotA/TolQ/ExbB proton channel family LYZ39_17915 PF05280 Flagellar transcriptional activator (FlhC) LYZ39_17920 PF05247 Flagellar transcriptional activator (FlhD) LYZ39_17925 PF04542 Sigma-70 region 2 LYZ39_17925 PF04539 Sigma-70 region 3 LYZ39_17925 PF04545 Sigma-70, region 4 LYZ39_17930 PF00700 Bacterial flagellin C-terminal helical region LYZ39_17930 PF00669 Bacterial flagellin N-terminal helical region LYZ39_17930 PF12445 Flagellin protein LYZ39_17945 PF00483 Nucleotidyl transferase LYZ39_17950 PF16363 GDP-mannose 4,6 dehydratase LYZ39_17955 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LYZ39_17960 PF08421 Putative zinc binding domain LYZ39_17960 PF08484 C-methyltransferase C-terminal domain LYZ39_17970 PF04989 Cephalosporin hydroxylase LYZ39_17975 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal LYZ39_17975 PF00132 Bacterial transferase hexapeptide (six repeats) LYZ39_17975 PF14602 Hexapeptide repeat of succinyl-transferase LYZ39_18015 PF00364 Biotin-requiring enzyme LYZ39_18015 PF02817 e3 binding domain LYZ39_18015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LYZ39_18020 PF17831 Pyruvate dehydrogenase E1 component middle domain LYZ39_18020 PF00456 Transketolase, thiamine diphosphate binding domain LYZ39_18025 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_18025 PF00989 PAS fold LYZ39_18030 PF00072 Response regulator receiver domain LYZ39_18030 PF00196 Bacterial regulatory proteins, luxR family LYZ39_18035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LYZ39_18035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LYZ39_18040 PF01432 Peptidase family M3 LYZ39_18045 PF02630 SCO1/SenC LYZ39_18050 PF04226 Transglycosylase associated protein LYZ39_18055 PF02321 Outer membrane efflux protein LYZ39_18055 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LYZ39_18060 PF00873 AcrB/AcrD/AcrF family LYZ39_18065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_18065 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_18070 PF03466 LysR substrate binding domain LYZ39_18070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18075 PF00849 RNA pseudouridylate synthase LYZ39_18075 PF01479 S4 domain LYZ39_18080 PF04345 Chorismate lyase LYZ39_18095 PF00857 Isochorismatase family LYZ39_18100 PF01968 Hydantoinase/oxoprolinase LYZ39_18100 PF05378 Hydantoinase/oxoprolinase N-terminal region LYZ39_18105 PF02538 Hydantoinase B/oxoprolinase LYZ39_18110 PF00694 Aconitase C-terminal domain LYZ39_18115 PF00330 Aconitase family (aconitate hydratase) LYZ39_18120 PF00005 ABC transporter LYZ39_18125 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_18125 PF00005 ABC transporter LYZ39_18130 PF11862 Domain of unknown function (DUF3382) LYZ39_18130 PF02653 Branched-chain amino acid transport system / permease component LYZ39_18135 PF02653 Branched-chain amino acid transport system / permease component LYZ39_18140 PF13458 Periplasmic binding protein LYZ39_18145 PF07702 UTRA domain LYZ39_18145 PF00392 Bacterial regulatory proteins, gntR family LYZ39_18150 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_18165 PF07690 Major Facilitator Superfamily LYZ39_18180 PF07152 YaeQ protein LYZ39_18185 PF01810 LysE type translocator LYZ39_18190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_18190 PF00005 ABC transporter LYZ39_18195 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_18195 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_18200 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_18205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_18215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18215 PF03466 LysR substrate binding domain LYZ39_18220 PF05506 Domain of unknown function (DUF756) LYZ39_18220 PF04185 Phosphoesterase family LYZ39_18245 PF08334 Type II secretion system (T2SS), protein G LYZ39_18245 PF07963 Prokaryotic N-terminal methylation motif LYZ39_18255 PF07963 Prokaryotic N-terminal methylation motif LYZ39_18255 PF02501 Type II secretion system (T2SS), protein I LYZ39_18260 PF11612 Type II secretion system (T2SS), protein J LYZ39_18260 PF07963 Prokaryotic N-terminal methylation motif LYZ39_18285 PF00437 Type II/IV secretion system protein LYZ39_18290 PF00263 Bacterial type II and III secretion system protein LYZ39_18290 PF03958 Bacterial type II/III secretion system short domain LYZ39_18295 PF00482 Type II secretion system (T2SS), protein F LYZ39_18300 PF00543 Nitrogen regulatory protein P-II LYZ39_18305 PF02540 NAD synthase LYZ39_18305 PF00795 Carbon-nitrogen hydrolase LYZ39_18310 PF00924 Mechanosensitive ion channel LYZ39_18315 PF00206 Lyase LYZ39_18315 PF14698 Argininosuccinate lyase C-terminal LYZ39_18325 PF02515 CoA-transferase family III LYZ39_18330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18330 PF03466 LysR substrate binding domain LYZ39_18335 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_18345 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_18345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LYZ39_18350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LYZ39_18350 PF00364 Biotin-requiring enzyme LYZ39_18350 PF02817 e3 binding domain LYZ39_18355 PF02780 Transketolase, C-terminal domain LYZ39_18355 PF02779 Transketolase, pyrimidine binding domain LYZ39_18360 PF00676 Dehydrogenase E1 component LYZ39_18360 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal LYZ39_18365 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_18365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_18365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_18370 PF00440 Bacterial regulatory proteins, tetR family LYZ39_18370 PF08361 MAATS-type transcriptional repressor, C-terminal region LYZ39_18380 PF02515 CoA-transferase family III LYZ39_18385 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_18395 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_18400 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_18405 PF00392 Bacterial regulatory proteins, gntR family LYZ39_18405 PF07729 FCD domain LYZ39_18410 PF02515 CoA-transferase family III LYZ39_18415 PF13411 MerR HTH family regulatory protein LYZ39_18420 PF00403 Heavy-metal-associated domain LYZ39_18425 PF12833 Helix-turn-helix domain LYZ39_18425 PF00072 Response regulator receiver domain LYZ39_18430 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_18430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_18430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_18435 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_18445 PF13302 Acetyltransferase (GNAT) domain LYZ39_18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18450 PF03466 LysR substrate binding domain LYZ39_18455 PF07690 Major Facilitator Superfamily LYZ39_18465 PF00677 Lumazine binding domain LYZ39_18470 PF00171 Aldehyde dehydrogenase family LYZ39_18475 PF07729 FCD domain LYZ39_18475 PF00392 Bacterial regulatory proteins, gntR family LYZ39_18490 PF13426 PAS domain LYZ39_18490 PF00072 Response regulator receiver domain LYZ39_18490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_18495 PF00158 Sigma-54 interaction domain LYZ39_18495 PF00072 Response regulator receiver domain LYZ39_18495 PF02954 Bacterial regulatory protein, Fis family LYZ39_18500 PF00313 'Cold-shock' DNA-binding domain LYZ39_18505 PF02464 Competence-damaged protein LYZ39_18505 PF18146 Damage-inducible protein CinA KH domain LYZ39_18505 PF00994 Probable molybdopterin binding domain LYZ39_18510 PF03553 Na+/H+ antiporter family LYZ39_18555 PF03797 Autotransporter beta-domain LYZ39_18600 PF00221 Aromatic amino acid lyase LYZ39_18605 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_18610 PF02423 Ornithine cyclodeaminase/mu-crystallin family LYZ39_18625 PF00296 Luciferase-like monooxygenase LYZ39_18645 PF01914 MarC family integral membrane protein LYZ39_18650 PF00005 ABC transporter LYZ39_18650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_18655 PF00005 ABC transporter LYZ39_18655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_18660 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_18660 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_18665 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_18670 PF01266 FAD dependent oxidoreductase LYZ39_18675 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_18675 PF04324 BFD-like [2Fe-2S] binding domain LYZ39_18685 PF01266 FAD dependent oxidoreductase LYZ39_18690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18690 PF03466 LysR substrate binding domain LYZ39_18695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_18700 PF08241 Methyltransferase domain LYZ39_18705 PF07690 Major Facilitator Superfamily LYZ39_18710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18710 PF03466 LysR substrate binding domain LYZ39_18725 PF01012 Electron transfer flavoprotein domain LYZ39_18725 PF00766 Electron transfer flavoprotein FAD-binding domain LYZ39_18730 PF01012 Electron transfer flavoprotein domain LYZ39_18740 PF01571 Aminomethyltransferase folate-binding domain LYZ39_18740 PF01266 FAD dependent oxidoreductase LYZ39_18740 PF16350 FAD dependent oxidoreductase central domain LYZ39_18740 PF08669 Glycine cleavage T-protein C-terminal barrel domain LYZ39_18745 PF09084 NMT1/THI5 like LYZ39_18750 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_18755 PF00005 ABC transporter LYZ39_18765 PF03466 LysR substrate binding domain LYZ39_18765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18770 PF00664 ABC transporter transmembrane region LYZ39_18770 PF00005 ABC transporter LYZ39_18780 PF00005 ABC transporter LYZ39_18785 PF00005 ABC transporter LYZ39_18805 PF00171 Aldehyde dehydrogenase family LYZ39_18820 PF00392 Bacterial regulatory proteins, gntR family LYZ39_18820 PF07729 FCD domain LYZ39_18825 PF00664 ABC transporter transmembrane region LYZ39_18825 PF00005 ABC transporter LYZ39_18830 PF01810 LysE type translocator LYZ39_18835 PF01037 Lrp/AsnC ligand binding domain LYZ39_18840 PF01965 DJ-1/PfpI family LYZ39_18845 PF01965 DJ-1/PfpI family LYZ39_18845 PF12833 Helix-turn-helix domain LYZ39_18855 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_18865 PF00501 AMP-binding enzyme LYZ39_18865 PF13193 AMP-binding enzyme C-terminal domain LYZ39_18870 PF07702 UTRA domain LYZ39_18870 PF00392 Bacterial regulatory proteins, gntR family LYZ39_18880 PF01323 DSBA-like thioredoxin domain LYZ39_18885 PF00083 Sugar (and other) transporter LYZ39_18885 PF07690 Major Facilitator Superfamily LYZ39_18890 PF00596 Class II Aldolase and Adducin N-terminal domain LYZ39_18895 PF03466 LysR substrate binding domain LYZ39_18895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18905 PF03466 LysR substrate binding domain LYZ39_18905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18910 PF01425 Amidase LYZ39_18915 PF07690 Major Facilitator Superfamily LYZ39_18925 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase LYZ39_18935 PF03466 LysR substrate binding domain LYZ39_18935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18945 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_18950 PF00563 EAL domain LYZ39_18950 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_18950 PF13426 PAS domain LYZ39_18955 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_18960 PF00920 Dehydratase family LYZ39_18970 PF04542 Sigma-70 region 2 LYZ39_18970 PF08281 Sigma-70, region 4 LYZ39_18975 PF04773 FecR protein LYZ39_18975 PF16220 Domain of unknown function (DUF4880) LYZ39_18980 PF07715 TonB-dependent Receptor Plug Domain LYZ39_18980 PF00593 TonB dependent receptor LYZ39_18985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_18985 PF03466 LysR substrate binding domain LYZ39_18990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_18990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_18990 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LYZ39_18995 PF05853 beta-keto acid cleavage enzyme LYZ39_19010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LYZ39_19010 PF00384 Molybdopterin oxidoreductase LYZ39_19010 PF01568 Molydopterin dinucleotide binding domain LYZ39_19015 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LYZ39_19020 PF03264 NapC/NirT cytochrome c family, N-terminal region LYZ39_19025 PF00005 ABC transporter LYZ39_19030 PF03379 CcmB protein LYZ39_19035 PF01578 Cytochrome C assembly protein LYZ39_19045 PF03100 CcmE LYZ39_19050 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LYZ39_19050 PF01578 Cytochrome C assembly protein LYZ39_19055 PF08534 Redoxin LYZ39_19060 PF03918 Cytochrome C biogenesis protein LYZ39_19070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LYZ39_19070 PF00384 Molybdopterin oxidoreductase LYZ39_19070 PF01568 Molydopterin dinucleotide binding domain LYZ39_19075 PF03916 Polysulphide reductase, NrfD LYZ39_19080 PF13247 4Fe-4S dicluster domain LYZ39_19090 PF02678 Pirin LYZ39_19090 PF05726 Pirin C-terminal cupin domain LYZ39_19100 PF03466 LysR substrate binding domain LYZ39_19100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_19105 PF00248 Aldo/keto reductase family LYZ39_19110 PF00145 C-5 cytosine-specific DNA methylase LYZ39_19110 PF01381 Helix-turn-helix LYZ39_19120 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LYZ39_19120 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LYZ39_19125 PF13193 AMP-binding enzyme C-terminal domain LYZ39_19125 PF00501 AMP-binding enzyme LYZ39_19140 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_19145 PF07687 Peptidase dimerisation domain LYZ39_19145 PF01546 Peptidase family M20/M25/M40 LYZ39_19155 PF00892 EamA-like transporter family LYZ39_19160 PF03055 Retinal pigment epithelial membrane protein LYZ39_19165 PF00892 EamA-like transporter family LYZ39_19175 PF00155 Aminotransferase class I and II LYZ39_19175 PF00392 Bacterial regulatory proteins, gntR family LYZ39_19180 PF01575 MaoC like domain LYZ39_19185 PF02803 Thiolase, C-terminal domain LYZ39_19185 PF00108 Thiolase, N-terminal domain LYZ39_19190 PF00106 short chain dehydrogenase LYZ39_19195 PF02515 CoA-transferase family III LYZ39_19200 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_19205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_19205 PF03466 LysR substrate binding domain LYZ39_19215 PF01810 LysE type translocator LYZ39_19225 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_19225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LYZ39_19230 PF01810 LysE type translocator LYZ39_19235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LYZ39_19240 PF00394 Multicopper oxidase LYZ39_19240 PF07732 Multicopper oxidase LYZ39_19245 PF13545 Crp-like helix-turn-helix domain LYZ39_19255 PF00115 Cytochrome C and Quinol oxidase polypeptide I LYZ39_19260 PF01177 Asp/Glu/Hydantoin racemase LYZ39_19270 PF13193 AMP-binding enzyme C-terminal domain LYZ39_19270 PF00501 AMP-binding enzyme LYZ39_19275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_19275 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_19275 PF12806 Acetyl-CoA dehydrogenase C-terminal like LYZ39_19275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_19280 PF07690 Major Facilitator Superfamily LYZ39_19285 PF01638 HxlR-like helix-turn-helix LYZ39_19295 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_19300 PF03466 LysR substrate binding domain LYZ39_19300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_19305 PF03466 LysR substrate binding domain LYZ39_19305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_19315 PF03466 LysR substrate binding domain LYZ39_19315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_19330 PF01619 Proline dehydrogenase LYZ39_19340 PF01266 FAD dependent oxidoreductase LYZ39_19345 PF02082 Transcriptional regulator LYZ39_19350 PF00175 Oxidoreductase NAD-binding domain LYZ39_19350 PF00042 Globin LYZ39_19350 PF00970 Oxidoreductase FAD-binding domain LYZ39_19355 PF09424 Yqey-like protein LYZ39_19360 PF00817 impB/mucB/samB family LYZ39_19360 PF11798 IMS family HHH motif LYZ39_19360 PF11799 impB/mucB/samB family C-terminal domain LYZ39_19375 PF00326 Prolyl oligopeptidase family LYZ39_19380 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_19390 PF01522 Polysaccharide deacetylase LYZ39_19390 PF14883 Hypothetical glycosyl hydrolase family 13 LYZ39_19395 PF00535 Glycosyl transferase family 2 LYZ39_19405 PF07690 Major Facilitator Superfamily LYZ39_19415 PF17092 Penicillin-binding protein OB-like domain LYZ39_19415 PF00912 Transglycosylase LYZ39_19415 PF00905 Penicillin binding protein transpeptidase domain LYZ39_19420 PF00149 Calcineurin-like phosphoesterase LYZ39_19435 PF00248 Aldo/keto reductase family LYZ39_19440 PF00005 ABC transporter LYZ39_19440 PF00664 ABC transporter transmembrane region LYZ39_19450 PF13593 SBF-like CPA transporter family (DUF4137) LYZ39_19455 PF03466 LysR substrate binding domain LYZ39_19455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_19470 PF00005 ABC transporter LYZ39_19480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LYZ39_19480 PF02142 MGS-like domain LYZ39_19480 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LYZ39_19495 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_19500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_19500 PF03466 LysR substrate binding domain LYZ39_19530 PF01037 Lrp/AsnC ligand binding domain LYZ39_19555 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_19565 PF00583 Acetyltransferase (GNAT) family LYZ39_19570 PF02567 Phenazine biosynthesis-like protein LYZ39_19575 PF00884 Sulfatase LYZ39_19575 PF16347 Domain of unknown function (DUF4976) LYZ39_19580 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_19585 PF03466 LysR substrate binding domain LYZ39_19585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_19605 PF00216 Bacterial DNA-binding protein LYZ39_19610 PF03147 Ferredoxin-fold anticodon binding domain LYZ39_19610 PF03483 B3/4 domain LYZ39_19610 PF01588 Putative tRNA binding domain LYZ39_19610 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LYZ39_19610 PF03484 tRNA synthetase B5 domain LYZ39_19615 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LYZ39_19615 PF01409 tRNA synthetases class II core domain (F) LYZ39_19620 PF00453 Ribosomal protein L20 LYZ39_19625 PF01632 Ribosomal protein L35 LYZ39_19630 PF01078 Magnesium chelatase, subunit ChlI LYZ39_19630 PF13335 Magnesium chelatase, subunit ChlI C-terminal LYZ39_19635 PF04380 Membrane fusogenic activity LYZ39_19640 PF00543 Nitrogen regulatory protein P-II LYZ39_19645 PF00909 Ammonium Transporter Family LYZ39_19650 PF02896 PEP-utilising enzyme, TIM barrel domain LYZ39_19650 PF00391 PEP-utilising enzyme, mobile domain LYZ39_19650 PF05524 PEP-utilising enzyme, N-terminal LYZ39_19655 PF00381 PTS HPr component phosphorylation site LYZ39_19665 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LYZ39_19665 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LYZ39_19670 PF00707 Translation initiation factor IF-3, C-terminal domain LYZ39_19670 PF05198 Translation initiation factor IF-3, N-terminal domain LYZ39_19675 PF03129 Anticodon binding domain LYZ39_19675 PF02824 TGS domain LYZ39_19675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LYZ39_19675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LYZ39_19680 PF00196 Bacterial regulatory proteins, luxR family LYZ39_19680 PF00072 Response regulator receiver domain LYZ39_19685 PF06969 HemN C-terminal domain LYZ39_19685 PF04055 Radical SAM superfamily LYZ39_19695 PF07729 FCD domain LYZ39_19695 PF00392 Bacterial regulatory proteins, gntR family LYZ39_19700 PF07687 Peptidase dimerisation domain LYZ39_19700 PF01546 Peptidase family M20/M25/M40 LYZ39_19710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_19715 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_19720 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_19720 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_19725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_19725 PF00005 ABC transporter LYZ39_19730 PF07883 Cupin domain LYZ39_19735 PF00850 Histone deacetylase domain LYZ39_19745 PF00593 TonB dependent receptor LYZ39_19745 PF07715 TonB-dependent Receptor Plug Domain LYZ39_19750 PF01497 Periplasmic binding protein LYZ39_19755 PF00005 ABC transporter LYZ39_19760 PF01032 FecCD transport family LYZ39_19765 PF01032 FecCD transport family LYZ39_19770 PF00005 ABC transporter LYZ39_19775 PF00664 ABC transporter transmembrane region LYZ39_19775 PF08021 Siderophore-interacting FAD-binding domain LYZ39_19775 PF04954 Siderophore-interacting protein LYZ39_19775 PF00005 ABC transporter LYZ39_19785 PF00356 Bacterial regulatory proteins, lacI family LYZ39_19785 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LYZ39_19790 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LYZ39_19795 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_19800 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_19805 PF00920 Dehydratase family LYZ39_19830 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LYZ39_19835 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_19840 PF01416 tRNA pseudouridine synthase LYZ39_19850 PF02774 Semialdehyde dehydrogenase, dimerisation domain LYZ39_19850 PF01118 Semialdehyde dehydrogenase, NAD binding domain LYZ39_19855 PF00180 Isocitrate/isopropylmalate dehydrogenase LYZ39_19860 PF00694 Aconitase C-terminal domain LYZ39_19865 PF00330 Aconitase family (aconitate hydratase) LYZ39_19870 PF02321 Outer membrane efflux protein LYZ39_19880 PF03412 Peptidase C39 family LYZ39_19880 PF00005 ABC transporter LYZ39_19880 PF00664 ABC transporter transmembrane region LYZ39_19885 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_19885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_19890 PF00196 Bacterial regulatory proteins, luxR family LYZ39_19890 PF00072 Response regulator receiver domain LYZ39_19920 PF01435 Peptidase family M48 LYZ39_19925 PF01264 Chorismate synthase LYZ39_19930 PF00563 EAL domain LYZ39_19930 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_19930 PF03707 Bacterial signalling protein N terminal repeat LYZ39_19940 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_19940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_19940 PF07689 KaiB domain LYZ39_19945 PF00072 Response regulator receiver domain LYZ39_19945 PF00486 Transcriptional regulatory protein, C terminal LYZ39_19950 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LYZ39_19960 PF03631 Virulence factor BrkB LYZ39_19970 PF01207 Dihydrouridine synthase (Dus) LYZ39_19975 PF01636 Phosphotransferase enzyme family LYZ39_19995 PF00437 Type II/IV secretion system protein LYZ39_20000 PF13629 Pilus formation protein N terminal region LYZ39_20000 PF04972 BON domain LYZ39_20000 PF00263 Bacterial type II and III secretion system protein LYZ39_20045 PF16200 C-terminal region of band_7 LYZ39_20045 PF01145 SPFH domain / Band 7 family LYZ39_20060 PF10668 Phage terminase small subunit LYZ39_20060 PF03592 Terminase small subunit LYZ39_20095 PF04545 Sigma-70, region 4 LYZ39_20095 PF04539 Sigma-70 region 3 LYZ39_20095 PF04542 Sigma-70 region 2 LYZ39_20095 PF00140 Sigma-70 factor, region 1.2 LYZ39_20095 PF03979 Sigma-70 factor, region 1.1 LYZ39_20095 PF04546 Sigma-70, non-essential region LYZ39_20100 PF10410 DnaB-helicase binding domain of primase LYZ39_20100 PF08278 DNA primase DnaG DnaB-binding LYZ39_20100 PF01807 CHC2 zinc finger LYZ39_20100 PF08275 DNA primase catalytic core, N-terminal domain LYZ39_20105 PF01165 Ribosomal protein S21 LYZ39_20110 PF00156 Phosphoribosyl transferase domain LYZ39_20115 PF00709 Adenylosuccinate synthetase LYZ39_20120 PF13393 Histidyl-tRNA synthetase LYZ39_20125 PF01145 SPFH domain / Band 7 family LYZ39_20130 PF12221 Bacterial membrane protein N terminal LYZ39_20130 PF01145 SPFH domain / Band 7 family LYZ39_20135 PF01926 50S ribosome-binding GTPase LYZ39_20135 PF13167 GTP-binding GTPase N-terminal LYZ39_20135 PF16360 GTP-binding GTPase Middle Region LYZ39_20140 PF17209 Hfq protein LYZ39_20145 PF00155 Aminotransferase class I and II LYZ39_20150 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LYZ39_20150 PF01926 50S ribosome-binding GTPase LYZ39_20155 PF13360 PQQ-like domain LYZ39_20160 PF09976 Tetratricopeptide repeat-like domain LYZ39_20165 PF13393 Histidyl-tRNA synthetase LYZ39_20165 PF03129 Anticodon binding domain LYZ39_20170 PF04551 GcpE protein LYZ39_20180 PF04055 Radical SAM superfamily LYZ39_20185 PF00334 Nucleoside diphosphate kinase LYZ39_20190 PF08264 Anticodon-binding domain of tRNA LYZ39_20190 PF00133 tRNA synthetases class I (I, L, M and V) LYZ39_20190 PF10458 Valyl tRNA synthetase tRNA binding arm LYZ39_20195 PF01266 FAD dependent oxidoreductase LYZ39_20200 PF00005 ABC transporter LYZ39_20205 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_20210 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_20220 PF01746 tRNA (Guanine-1)-methyltransferase LYZ39_20225 PF01782 RimM N-terminal domain LYZ39_20230 PF00886 Ribosomal protein S16 LYZ39_20240 PF01206 Sulfurtransferase TusA LYZ39_20245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LYZ39_20245 PF02272 DHHA1 domain LYZ39_20245 PF01411 tRNA synthetases class II (A) LYZ39_20265 PF00437 Type II/IV secretion system protein LYZ39_20290 PF13416 Bacterial extracellular solute-binding protein LYZ39_20295 PF01266 FAD dependent oxidoreductase LYZ39_20300 PF00970 Oxidoreductase FAD-binding domain LYZ39_20300 PF00111 2Fe-2S iron-sulfur cluster binding domain LYZ39_20300 PF00175 Oxidoreductase NAD-binding domain LYZ39_20305 PF02261 Aspartate decarboxylase LYZ39_20310 PF00893 Small Multidrug Resistance protein LYZ39_20315 PF03473 MOSC domain LYZ39_20315 PF00111 2Fe-2S iron-sulfur cluster binding domain LYZ39_20315 PF03476 MOSC N-terminal beta barrel domain LYZ39_20320 PF05721 Phytanoyl-CoA dioxygenase (PhyH) LYZ39_20325 PF06339 Ectoine synthase LYZ39_20330 PF00202 Aminotransferase class-III LYZ39_20335 PF00583 Acetyltransferase (GNAT) family LYZ39_20340 PF12802 MarR family LYZ39_20350 PF00202 Aminotransferase class-III LYZ39_20355 PF16868 NMT1-like family LYZ39_20365 PF04235 Protein of unknown function (DUF418) LYZ39_20370 PF00521 DNA gyrase/topoisomerase IV, subunit A LYZ39_20380 PF00204 DNA gyrase B LYZ39_20380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_20380 PF01751 Toprim domain LYZ39_20380 PF00986 DNA gyrase B subunit, carboxyl terminus LYZ39_20385 PF00085 Thioredoxin LYZ39_20390 PF07497 Rho termination factor, RNA-binding domain LYZ39_20390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LYZ39_20390 PF07498 Rho termination factor, N-terminal domain LYZ39_20400 PF03710 Glutamate-ammonia ligase adenylyltransferase LYZ39_20400 PF08335 GlnD PII-uridylyltransferase LYZ39_20405 PF02677 Epoxyqueuosine reductase QueH LYZ39_20410 PF14525 AraC-binding-like domain LYZ39_20420 PF02975 Methylamine dehydrogenase, L chain LYZ39_20425 PF00578 AhpC/TSA family LYZ39_20435 PF06433 Methylamine dehydrogenase heavy chain (MADH) LYZ39_20445 PF00171 Aldehyde dehydrogenase family LYZ39_20450 PF00107 Zinc-binding dehydrogenase LYZ39_20450 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_20470 PF02321 Outer membrane efflux protein LYZ39_20475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_20475 PF00529 HlyD membrane-fusion protein of T1SS LYZ39_20480 PF07690 Major Facilitator Superfamily LYZ39_20490 PF00180 Isocitrate/isopropylmalate dehydrogenase LYZ39_20495 PF05872 Bacterial protein of unknown function (DUF853) LYZ39_20500 PF01709 Transcriptional regulator LYZ39_20505 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LYZ39_20505 PF02843 Phosphoribosylglycinamide synthetase, C domain LYZ39_20505 PF02844 Phosphoribosylglycinamide synthetase, N domain LYZ39_20510 PF01218 Coproporphyrinogen III oxidase LYZ39_20515 PF01467 Cytidylyltransferase-like LYZ39_20525 PF02590 Predicted SPOUT methyltransferase LYZ39_20530 PF02545 Maf-like protein LYZ39_20535 PF00375 Sodium:dicarboxylate symporter family LYZ39_20545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_20545 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_20550 PF00158 Sigma-54 interaction domain LYZ39_20550 PF00072 Response regulator receiver domain LYZ39_20550 PF02954 Bacterial regulatory protein, Fis family LYZ39_20580 PF00575 S1 RNA binding domain LYZ39_20580 PF10150 Ribonuclease E/G family LYZ39_20590 PF00535 Glycosyl transferase family 2 LYZ39_20595 PF11254 Protein of unknown function (DUF3053) LYZ39_20600 PF02254 TrkA-N domain LYZ39_20600 PF00999 Sodium/hydrogen exchanger family LYZ39_20605 PF00664 ABC transporter transmembrane region LYZ39_20605 PF00005 ABC transporter LYZ39_20620 PF03692 Putative zinc- or iron-chelating domain LYZ39_20635 PF13439 Glycosyltransferase Family 4 LYZ39_20635 PF00534 Glycosyl transferases group 1 LYZ39_20640 PF00535 Glycosyl transferase family 2 LYZ39_20645 PF01522 Polysaccharide deacetylase LYZ39_20650 PF13439 Glycosyltransferase Family 4 LYZ39_20650 PF00534 Glycosyl transferases group 1 LYZ39_20655 PF01336 OB-fold nucleic acid binding domain LYZ39_20655 PF14579 Helix-hairpin-helix motif LYZ39_20655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LYZ39_20655 PF07733 Bacterial DNA polymerase III alpha NTPase domain LYZ39_20655 PF02811 PHP domain LYZ39_20665 PF11898 Domain of unknown function (DUF3418) LYZ39_20665 PF04408 Helicase associated domain (HA2) LYZ39_20665 PF00270 DEAD/DEAH box helicase LYZ39_20665 PF00271 Helicase conserved C-terminal domain LYZ39_20665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LYZ39_20670 PF00696 Amino acid kinase family LYZ39_20670 PF00583 Acetyltransferase (GNAT) family LYZ39_20675 PF04362 Bacterial Fe(2+) trafficking LYZ39_20680 PF04185 Phosphoesterase family LYZ39_20680 PF05506 Domain of unknown function (DUF756) LYZ39_20685 PF01895 PhoU domain LYZ39_20690 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LYZ39_20695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_20695 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_20695 PF18158 Adaptive response protein AidB N-terminal domain LYZ39_20700 PF01425 Amidase LYZ39_20705 PF02646 RmuC family LYZ39_20715 PF02245 Methylpurine-DNA glycosylase (MPG) LYZ39_20725 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_20730 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_20735 PF00005 ABC transporter LYZ39_20735 PF08402 TOBE domain LYZ39_20740 PF13416 Bacterial extracellular solute-binding protein LYZ39_20760 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_20770 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LYZ39_20770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LYZ39_20775 PF01177 Asp/Glu/Hydantoin racemase LYZ39_20785 PF00202 Aminotransferase class-III LYZ39_20790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LYZ39_20790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LYZ39_20810 PF04909 Amidohydrolase LYZ39_20815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_20815 PF03466 LysR substrate binding domain LYZ39_20820 PF00764 Arginosuccinate synthase LYZ39_20825 PF02705 K+ potassium transporter LYZ39_20830 PF08521 Two-component sensor kinase N-terminal LYZ39_20830 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_20830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_20835 PF00072 Response regulator receiver domain LYZ39_20835 PF00486 Transcriptional regulatory protein, C terminal LYZ39_20840 PF02472 Biopolymer transport protein ExbD/TolR LYZ39_20845 PF01618 MotA/TolQ/ExbB proton channel family LYZ39_20860 PF00216 Bacterial DNA-binding protein LYZ39_20865 PF18331 PKHD-type hydroxylase C-terminal domain LYZ39_20865 PF13640 2OG-Fe(II) oxygenase superfamily LYZ39_20870 PF01053 Cys/Met metabolism PLP-dependent enzyme LYZ39_20875 PF00588 SpoU rRNA Methylase family LYZ39_20875 PF08032 RNA 2'-O ribose methyltransferase substrate binding LYZ39_20880 PF17876 Cold shock domain LYZ39_20880 PF08461 Ribonuclease R winged-helix domain LYZ39_20880 PF00773 RNB domain LYZ39_20880 PF08206 Ribonuclease B OB domain LYZ39_20880 PF00575 S1 RNA binding domain LYZ39_20900 PF13673 Acetyltransferase (GNAT) domain LYZ39_20915 PF02040 Arsenical pump membrane protein LYZ39_20920 PF04143 Sulphur transport LYZ39_20925 PF01645 Conserved region in glutamate synthase LYZ39_20930 PF13091 PLD-like domain LYZ39_20930 PF13396 Phospholipase_D-nuclease N-terminal LYZ39_20940 PF10017 Histidine-specific methyltransferase, SAM-dependent LYZ39_21025 PF00892 EamA-like transporter family LYZ39_21035 PF00563 EAL domain LYZ39_21035 PF03707 Bacterial signalling protein N terminal repeat LYZ39_21035 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_21050 PF01594 AI-2E family transporter LYZ39_21075 PF01322 Cytochrome C' LYZ39_21080 PF00206 Lyase LYZ39_21080 PF08328 Adenylosuccinate lyase C-terminal LYZ39_21085 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_21085 PF13417 Glutathione S-transferase, N-terminal domain LYZ39_21090 PF01925 Sulfite exporter TauE/SafE LYZ39_21100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_21100 PF03466 LysR substrate binding domain LYZ39_21105 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_21115 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LYZ39_21115 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LYZ39_21120 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LYZ39_21125 PF02233 NAD(P) transhydrogenase beta subunit LYZ39_21130 PF13183 4Fe-4S dicluster domain LYZ39_21130 PF02754 Cysteine-rich domain LYZ39_21135 PF01565 FAD binding domain LYZ39_21140 PF02913 FAD linked oxidases, C-terminal domain LYZ39_21140 PF01565 FAD binding domain LYZ39_21145 PF01614 Bacterial transcriptional regulator LYZ39_21145 PF09339 IclR helix-turn-helix domain LYZ39_21160 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_21165 PF01565 FAD binding domain LYZ39_21165 PF02913 FAD linked oxidases, C-terminal domain LYZ39_21170 PF00793 DAHP synthetase I family LYZ39_21175 PF01523 Putative modulator of DNA gyrase LYZ39_21190 PF11940 Domain of unknown function (DUF3458) Ig-like fold LYZ39_21190 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LYZ39_21190 PF01433 Peptidase family M1 domain LYZ39_21195 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LYZ39_21205 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_21205 PF14821 Threonine synthase N terminus LYZ39_21210 PF03447 Homoserine dehydrogenase, NAD binding domain LYZ39_21210 PF01842 ACT domain LYZ39_21210 PF00742 Homoserine dehydrogenase LYZ39_21215 PF00155 Aminotransferase class I and II LYZ39_21225 PF00578 AhpC/TSA family LYZ39_21230 PF02562 PhoH-like protein LYZ39_21230 PF13638 PIN domain LYZ39_21240 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_21250 PF02653 Branched-chain amino acid transport system / permease component LYZ39_21255 PF00005 ABC transporter LYZ39_21260 PF00005 ABC transporter LYZ39_21260 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_21290 PF00719 Inorganic pyrophosphatase LYZ39_21310 PF03900 Porphobilinogen deaminase, C-terminal domain LYZ39_21310 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LYZ39_21315 PF03741 Integral membrane protein TerC family LYZ39_21320 PF03741 Integral membrane protein TerC family LYZ39_21325 PF00549 CoA-ligase LYZ39_21325 PF02629 CoA binding domain LYZ39_21330 PF00549 CoA-ligase LYZ39_21330 PF08442 ATP-grasp domain LYZ39_21340 PF08267 Cobalamin-independent synthase, N-terminal domain LYZ39_21340 PF01717 Cobalamin-independent synthase, Catalytic domain LYZ39_21345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_21345 PF03466 LysR substrate binding domain LYZ39_21350 PF02631 RecX family LYZ39_21355 PF00154 recA bacterial DNA recombination protein LYZ39_21360 PF00486 Transcriptional regulatory protein, C terminal LYZ39_21360 PF00072 Response regulator receiver domain LYZ39_21365 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_21365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_21370 PF08946 Osmosensory transporter coiled coil LYZ39_21370 PF00083 Sugar (and other) transporter LYZ39_21380 PF04381 Putative exonuclease, RdgC LYZ39_21385 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_21390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LYZ39_21390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LYZ39_21440 PF00155 Aminotransferase class I and II LYZ39_21440 PF00392 Bacterial regulatory proteins, gntR family LYZ39_21465 PF01037 Lrp/AsnC ligand binding domain LYZ39_21465 PF13404 AsnC-type helix-turn-helix domain LYZ39_21475 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LYZ39_21480 PF13593 SBF-like CPA transporter family (DUF4137) LYZ39_21485 PF03796 DnaB-like helicase C terminal domain LYZ39_21485 PF00772 DnaB-like helicase N terminal domain LYZ39_21495 PF01281 Ribosomal protein L9, N-terminal domain LYZ39_21495 PF03948 Ribosomal protein L9, C-terminal domain LYZ39_21500 PF01084 Ribosomal protein S18 LYZ39_21510 PF01250 Ribosomal protein S6 LYZ39_21515 PF05675 Protein of unknown function (DUF817) LYZ39_21520 PF02649 Type I GTP cyclohydrolase folE2 LYZ39_21525 PF02779 Transketolase, pyrimidine binding domain LYZ39_21525 PF02780 Transketolase, C-terminal domain LYZ39_21525 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LYZ39_21530 PF00348 Polyprenyl synthetase LYZ39_21535 PF02609 Exonuclease VII small subunit LYZ39_21545 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_21560 PF01266 FAD dependent oxidoreductase LYZ39_21570 PF13419 Haloacid dehalogenase-like hydrolase LYZ39_21580 PF08402 TOBE domain LYZ39_21580 PF00005 ABC transporter LYZ39_21585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_21585 PF03466 LysR substrate binding domain LYZ39_21595 PF00581 Rhodanese-like domain LYZ39_21605 PF01435 Peptidase family M48 LYZ39_21610 PF03313 Serine dehydratase alpha chain LYZ39_21610 PF03315 Serine dehydratase beta chain LYZ39_21615 PF02690 Na+/Pi-cotransporter LYZ39_21620 PF01738 Dienelactone hydrolase family LYZ39_21625 PF02535 ZIP Zinc transporter LYZ39_21630 PF01612 3'-5' exonuclease LYZ39_21630 PF00476 DNA polymerase family A LYZ39_21630 PF01367 5'-3' exonuclease, C-terminal SAM fold LYZ39_21630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LYZ39_21635 PF03641 Possible lysine decarboxylase LYZ39_21640 PF01546 Peptidase family M20/M25/M40 LYZ39_21645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_21645 PF03466 LysR substrate binding domain LYZ39_21655 PF00679 Elongation factor G C-terminus LYZ39_21655 PF00009 Elongation factor Tu GTP binding domain LYZ39_21655 PF03144 Elongation factor Tu domain 2 LYZ39_21660 PF01509 TruB family pseudouridylate synthase (N terminal domain) LYZ39_21660 PF16198 tRNA pseudouridylate synthase B C-terminal domain LYZ39_21665 PF02033 Ribosome-binding factor A LYZ39_21670 PF00009 Elongation factor Tu GTP binding domain LYZ39_21670 PF04760 Translation initiation factor IF-2, N-terminal region LYZ39_21670 PF11987 Translation-initiation factor 2 LYZ39_21670 PF08364 Bacterial translation initiation factor IF-2 associated region LYZ39_21675 PF13184 NusA-like KH domain LYZ39_21675 PF08529 NusA N-terminal domain LYZ39_21680 PF17384 RimP C-terminal SH3 domain LYZ39_21680 PF02576 RimP N-terminal domain LYZ39_21685 PF01479 S4 domain LYZ39_21685 PF00849 RNA pseudouridylate synthase LYZ39_21690 PF04079 Segregation and condensation complex subunit ScpB LYZ39_21700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_21700 PF03466 LysR substrate binding domain LYZ39_21705 PF07683 Cobalamin synthesis protein cobW C-terminal domain LYZ39_21705 PF02492 CobW/HypB/UreG, nucleotide-binding domain LYZ39_21720 PF00072 Response regulator receiver domain LYZ39_21720 PF00486 Transcriptional regulatory protein, C terminal LYZ39_21725 PF08521 Two-component sensor kinase N-terminal LYZ39_21725 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_21725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_21730 PF13180 PDZ domain LYZ39_21735 PF14497 Glutathione S-transferase, C-terminal domain LYZ39_21735 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_21740 PF02401 LytB protein LYZ39_21745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LYZ39_21750 PF04002 RadC-like JAB domain LYZ39_21755 PF04199 Putative cyclase LYZ39_21760 PF03301 Tryptophan 2,3-dioxygenase LYZ39_21765 PF01197 Ribosomal protein L31 LYZ39_21775 PF01554 MatE LYZ39_21780 PF14535 AMP-binding enzyme C-terminal domain LYZ39_21780 PF00501 AMP-binding enzyme LYZ39_21785 PF03061 Thioesterase superfamily LYZ39_21790 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_21795 PF00171 Aldehyde dehydrogenase family LYZ39_21800 PF00970 Oxidoreductase FAD-binding domain LYZ39_21800 PF00111 2Fe-2S iron-sulfur cluster binding domain LYZ39_21800 PF00175 Oxidoreductase NAD-binding domain LYZ39_21805 PF01883 Iron-sulfur cluster assembly protein LYZ39_21810 PF05138 Phenylacetic acid catabolic protein LYZ39_21815 PF06243 Phenylacetic acid degradation B LYZ39_21820 PF05138 Phenylacetic acid catabolic protein LYZ39_21825 PF07848 PaaX-like protein LYZ39_21825 PF08223 PaaX-like protein C-terminal domain LYZ39_21830 PF03853 YjeF-related protein N-terminus LYZ39_21835 PF00929 Exonuclease LYZ39_21840 PF01435 Peptidase family M48 LYZ39_21845 PF03193 RsgA GTPase LYZ39_21850 PF00293 NUDIX domain LYZ39_21855 PF01245 Ribosomal protein L19 LYZ39_21870 PF04055 Radical SAM superfamily LYZ39_21880 PF00009 Elongation factor Tu GTP binding domain LYZ39_21885 PF01507 Phosphoadenosine phosphosulfate reductase family LYZ39_21890 PF01507 Phosphoadenosine phosphosulfate reductase family LYZ39_21895 PF12857 TOBE-like domain LYZ39_21895 PF00005 ABC transporter LYZ39_21895 PF17850 CysA C-terminal regulatory domain LYZ39_21900 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_21905 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_21915 PF00578 AhpC/TSA family LYZ39_21915 PF10417 C-terminal domain of 1-Cys peroxiredoxin LYZ39_21920 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_21920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_21920 PF12806 Acetyl-CoA dehydrogenase C-terminal like LYZ39_21920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_21925 PF06826 Predicted Permease Membrane Region LYZ39_21925 PF02080 TrkA-C domain LYZ39_21930 PF00155 Aminotransferase class I and II LYZ39_21935 PF06826 Predicted Permease Membrane Region LYZ39_21940 PF00766 Electron transfer flavoprotein FAD-binding domain LYZ39_21940 PF01012 Electron transfer flavoprotein domain LYZ39_21945 PF01012 Electron transfer flavoprotein domain LYZ39_21950 PF00850 Histone deacetylase domain LYZ39_21955 PF13406 Transglycosylase SLT domain LYZ39_21960 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_21970 PF01370 NAD dependent epimerase/dehydratase family LYZ39_21975 PF00294 pfkB family carbohydrate kinase LYZ39_21980 PF18073 Rubredoxin metal binding domain LYZ39_21990 PF00216 Bacterial DNA-binding protein LYZ39_21995 PF00575 S1 RNA binding domain LYZ39_22000 PF02224 Cytidylate kinase LYZ39_22005 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LYZ39_22010 PF02153 Prephenate dehydrogenase LYZ39_22015 PF00155 Aminotransferase class I and II LYZ39_22020 PF01842 ACT domain LYZ39_22020 PF01817 Chorismate mutase type II LYZ39_22020 PF00800 Prephenate dehydratase LYZ39_22025 PF00266 Aminotransferase class-V LYZ39_22030 PF03989 DNA gyrase C-terminal domain, beta-propeller LYZ39_22030 PF00521 DNA gyrase/topoisomerase IV, subunit A LYZ39_22035 PF00691 OmpA family LYZ39_22045 PF13419 Haloacid dehalogenase-like hydrolase LYZ39_22050 PF07690 Major Facilitator Superfamily LYZ39_22065 PF12462 DNA helicase IV / RNA helicase N terminal LYZ39_22065 PF00580 UvrD/REP helicase N-terminal domain LYZ39_22065 PF13361 UvrD-like helicase C-terminal domain LYZ39_22070 PF00069 Protein kinase domain LYZ39_22090 PF13406 Transglycosylase SLT domain LYZ39_22095 PF03475 3-alpha domain LYZ39_22095 PF03473 MOSC domain LYZ39_22100 PF04305 Protein of unknown function (DUF455) LYZ39_22115 PF00664 ABC transporter transmembrane region LYZ39_22115 PF00005 ABC transporter LYZ39_22120 PF08443 RimK-like ATP-grasp domain LYZ39_22120 PF02875 Mur ligase family, glutamate ligase domain LYZ39_22120 PF08245 Mur ligase middle domain LYZ39_22125 PF08245 Mur ligase middle domain LYZ39_22125 PF02875 Mur ligase family, glutamate ligase domain LYZ39_22125 PF08443 RimK-like ATP-grasp domain LYZ39_22130 PF05532 CsbD-like LYZ39_22140 PF04972 BON domain LYZ39_22145 PF02567 Phenazine biosynthesis-like protein LYZ39_22155 PF03239 Iron permease FTR1 family LYZ39_22165 PF10634 Fe2+ transport protein LYZ39_22170 PF07879 PHB/PHA accumulation regulator DNA-binding domain LYZ39_22170 PF05233 PHB accumulation regulatory domain LYZ39_22175 PF00106 short chain dehydrogenase LYZ39_22180 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LYZ39_22185 PF02578 Multi-copper polyphenol oxidoreductase laccase LYZ39_22190 PF00849 RNA pseudouridylate synthase LYZ39_22190 PF01479 S4 domain LYZ39_22195 PF13525 Outer membrane lipoprotein LYZ39_22200 PF13307 Helicase C-terminal domain LYZ39_22200 PF04851 Type III restriction enzyme, res subunit LYZ39_22205 PF16921 Tex protein YqgF-like domain LYZ39_22205 PF09371 Tex-like protein N-terminal domain LYZ39_22205 PF17674 HHH domain LYZ39_22205 PF00575 S1 RNA binding domain LYZ39_22215 PF00579 tRNA synthetases class I (W and Y) LYZ39_22240 PF00593 TonB dependent receptor LYZ39_22240 PF07715 TonB-dependent Receptor Plug Domain LYZ39_22245 PF16220 Domain of unknown function (DUF4880) LYZ39_22245 PF04773 FecR protein LYZ39_22250 PF08281 Sigma-70, region 4 LYZ39_22250 PF04542 Sigma-70 region 2 LYZ39_22255 PF03969 AFG1-like ATPase LYZ39_22260 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_22260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LYZ39_22265 PF02817 e3 binding domain LYZ39_22265 PF00364 Biotin-requiring enzyme LYZ39_22265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LYZ39_22270 PF16078 2-oxoglutarate dehydrogenase N-terminus LYZ39_22270 PF00676 Dehydrogenase E1 component LYZ39_22270 PF16870 2-oxoglutarate dehydrogenase C-terminal LYZ39_22270 PF02779 Transketolase, pyrimidine binding domain LYZ39_22275 PF01037 Lrp/AsnC ligand binding domain LYZ39_22280 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_22290 PF07687 Peptidase dimerisation domain LYZ39_22290 PF01546 Peptidase family M20/M25/M40 LYZ39_22295 PF07687 Peptidase dimerisation domain LYZ39_22295 PF01546 Peptidase family M20/M25/M40 LYZ39_22300 PF03169 OPT oligopeptide transporter protein LYZ39_22305 PF00456 Transketolase, thiamine diphosphate binding domain LYZ39_22305 PF17831 Pyruvate dehydrogenase E1 component middle domain LYZ39_22310 PF01515 Phosphate acetyl/butaryl transferase LYZ39_22310 PF03949 Malic enzyme, NAD binding domain LYZ39_22310 PF00390 Malic enzyme, N-terminal domain LYZ39_22325 PF00285 Citrate synthase, C-terminal domain LYZ39_22330 PF03937 Flavinator of succinate dehydrogenase LYZ39_22335 PF13085 2Fe-2S iron-sulfur cluster binding domain LYZ39_22340 PF00890 FAD binding domain LYZ39_22340 PF02910 Fumarate reductase flavoprotein C-term LYZ39_22345 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LYZ39_22350 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LYZ39_22355 PF00392 Bacterial regulatory proteins, gntR family LYZ39_22355 PF07702 UTRA domain LYZ39_22360 PF00056 lactate/malate dehydrogenase, NAD binding domain LYZ39_22360 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LYZ39_22370 PF00285 Citrate synthase, C-terminal domain LYZ39_22375 PF03972 MmgE/PrpD family LYZ39_22380 PF03653 Uncharacterised protein family (UPF0093) LYZ39_22385 PF02926 THUMP domain LYZ39_22385 PF01170 Putative RNA methylase family UPF0020 LYZ39_22410 PF13193 AMP-binding enzyme C-terminal domain LYZ39_22410 PF00501 AMP-binding enzyme LYZ39_22420 PF01430 Hsp33 protein LYZ39_22430 PF04977 Septum formation initiator LYZ39_22435 PF00113 Enolase, C-terminal TIM barrel domain LYZ39_22435 PF03952 Enolase, N-terminal domain LYZ39_22445 PF00117 Glutamine amidotransferase class-I LYZ39_22445 PF06418 CTP synthase N-terminus LYZ39_22455 PF01568 Molydopterin dinucleotide binding domain LYZ39_22455 PF00384 Molybdopterin oxidoreductase LYZ39_22460 PF00701 Dihydrodipicolinate synthetase family LYZ39_22465 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_22470 PF00557 Metallopeptidase family M24 LYZ39_22470 PF01321 Creatinase/Prolidase N-terminal domain LYZ39_22480 PF03576 Peptidase family S58 LYZ39_22485 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_22485 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_22490 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_22495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_22500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_22500 PF00005 ABC transporter LYZ39_22505 PF01112 Asparaginase LYZ39_22515 PF13673 Acetyltransferase (GNAT) domain LYZ39_22520 PF01144 Coenzyme A transferase LYZ39_22525 PF01144 Coenzyme A transferase LYZ39_22540 PF01370 NAD dependent epimerase/dehydratase family LYZ39_22550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_22550 PF00005 ABC transporter LYZ39_22555 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_22555 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_22560 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_22565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_22580 PF00202 Aminotransferase class-III LYZ39_22585 PF01212 Beta-eliminating lyase LYZ39_22590 PF00892 EamA-like transporter family LYZ39_22595 PF00501 AMP-binding enzyme LYZ39_22595 PF16177 Acetyl-coenzyme A synthetase N-terminus LYZ39_22595 PF13193 AMP-binding enzyme C-terminal domain LYZ39_22605 PF03928 Haem-degrading LYZ39_22610 PF16177 Acetyl-coenzyme A synthetase N-terminus LYZ39_22610 PF00501 AMP-binding enzyme LYZ39_22610 PF13193 AMP-binding enzyme C-terminal domain LYZ39_22615 PF00877 NlpC/P60 family LYZ39_22625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_22625 PF03466 LysR substrate binding domain LYZ39_22630 PF00171 Aldehyde dehydrogenase family LYZ39_22640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_22650 PF00883 Cytosol aminopeptidase family, catalytic domain LYZ39_22650 PF02789 Cytosol aminopeptidase family, N-terminal domain LYZ39_22655 PF04364 DNA polymerase III chi subunit, HolC LYZ39_22665 PF01027 Inhibitor of apoptosis-promoting Bax1 LYZ39_22680 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_22690 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_22700 PF02565 Recombination protein O C terminal LYZ39_22700 PF11967 Recombination protein O N terminal LYZ39_22705 PF07650 KH domain LYZ39_22705 PF01926 50S ribosome-binding GTPase LYZ39_22710 PF00035 Double-stranded RNA binding motif LYZ39_22710 PF14622 Ribonuclease-III-like LYZ39_22715 PF10502 Signal peptidase, peptidase S26 LYZ39_22720 PF06421 GTP-binding protein LepA C-terminus LYZ39_22720 PF03144 Elongation factor Tu domain 2 LYZ39_22720 PF00009 Elongation factor Tu GTP binding domain LYZ39_22720 PF00679 Elongation factor G C-terminus LYZ39_22725 PF13180 PDZ domain LYZ39_22735 PF03872 Anti sigma-E protein RseA, N-terminal domain LYZ39_22735 PF03873 Anti sigma-E protein RseA, C-terminal domain LYZ39_22740 PF04542 Sigma-70 region 2 LYZ39_22740 PF08281 Sigma-70, region 4 LYZ39_22745 PF00109 Beta-ketoacyl synthase, N-terminal domain LYZ39_22745 PF02801 Beta-ketoacyl synthase, C-terminal domain LYZ39_22750 PF00550 Phosphopantetheine attachment site LYZ39_22760 PF00698 Acyl transferase domain LYZ39_22765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LYZ39_22765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LYZ39_22770 PF02504 Fatty acid synthesis protein LYZ39_22775 PF01783 Ribosomal L32p protein family LYZ39_22780 PF02620 Large ribosomal RNA subunit accumulation protein YceD LYZ39_22785 PF02545 Maf-like protein LYZ39_22790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LYZ39_22795 PF01510 N-acetylmuramoyl-L-alanine amidase LYZ39_22800 PF01794 Ferric reductase like transmembrane component LYZ39_22805 PF00174 Oxidoreductase molybdopterin binding domain LYZ39_22810 PF13419 Haloacid dehalogenase-like hydrolase LYZ39_22815 PF00849 RNA pseudouridylate synthase LYZ39_22815 PF01479 S4 domain LYZ39_22820 PF10150 Ribonuclease E/G family LYZ39_22820 PF00575 S1 RNA binding domain LYZ39_22820 PF12111 Polyribonucleotide phosphorylase C terminal LYZ39_22825 PF09411 Lipid A 3-O-deacylase (PagL) LYZ39_22830 PF17848 Acetyl-coA carboxylase zinc finger domain LYZ39_22830 PF01039 Carboxyl transferase domain LYZ39_22835 PF00290 Tryptophan synthase alpha chain LYZ39_22840 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_22845 PF07687 Peptidase dimerisation domain LYZ39_22845 PF01546 Peptidase family M20/M25/M40 LYZ39_22850 PF07690 Major Facilitator Superfamily LYZ39_22855 PF13291 ACT domain LYZ39_22855 PF04607 Region found in RelA / SpoT proteins LYZ39_22855 PF02824 TGS domain LYZ39_22860 PF06167 Glucose-regulated metallo-peptidase M90 LYZ39_22870 PF01042 Endoribonuclease L-PSP LYZ39_22875 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LYZ39_22875 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LYZ39_22880 PF11953 Domain of unknown function (DUF3470) LYZ39_22880 PF00037 4Fe-4S binding domain LYZ39_22885 PF00970 Oxidoreductase FAD-binding domain LYZ39_22885 PF00175 Oxidoreductase NAD-binding domain LYZ39_22895 PF04060 Putative Fe-S cluster LYZ39_22900 PF00730 HhH-GPD superfamily base excision DNA repair protein LYZ39_22900 PF10576 Iron-sulfur binding domain of endonuclease III LYZ39_22900 PF00633 Helix-hairpin-helix motif LYZ39_22905 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_22905 PF00005 ABC transporter LYZ39_22910 PF00005 ABC transporter LYZ39_22920 PF02653 Branched-chain amino acid transport system / permease component LYZ39_22935 PF01063 Amino-transferase class IV LYZ39_22940 PF00753 Metallo-beta-lactamase superfamily LYZ39_22945 PF00005 ABC transporter LYZ39_22950 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_22950 PF00005 ABC transporter LYZ39_22960 PF02653 Branched-chain amino acid transport system / permease component LYZ39_22980 PF01144 Coenzyme A transferase LYZ39_22985 PF01144 Coenzyme A transferase LYZ39_22990 PF00108 Thiolase, N-terminal domain LYZ39_22990 PF02803 Thiolase, C-terminal domain LYZ39_23000 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_23000 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_23000 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_23005 PF00364 Biotin-requiring enzyme LYZ39_23010 PF00289 Biotin carboxylase, N-terminal domain LYZ39_23010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LYZ39_23010 PF02785 Biotin carboxylase C-terminal domain LYZ39_23015 PF01039 Carboxyl transferase domain LYZ39_23020 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_23025 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_23030 PF00171 Aldehyde dehydrogenase family LYZ39_23035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_23035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_23040 PF09339 IclR helix-turn-helix domain LYZ39_23040 PF01614 Bacterial transcriptional regulator LYZ39_23045 PF05506 Domain of unknown function (DUF756) LYZ39_23045 PF04185 Phosphoesterase family LYZ39_23050 PF00005 ABC transporter LYZ39_23055 PF00005 ABC transporter LYZ39_23055 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_23070 PF02632 BioY family LYZ39_23075 PF02361 Cobalt transport protein LYZ39_23080 PF00005 ABC transporter LYZ39_23085 PF01641 SelR domain LYZ39_23090 PF04279 Intracellular septation protein A LYZ39_23105 PF00533 BRCA1 C Terminus (BRCT) domain LYZ39_23105 PF01653 NAD-dependent DNA ligase adenylation domain LYZ39_23105 PF12826 Helix-hairpin-helix motif LYZ39_23105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LYZ39_23105 PF03120 NAD-dependent DNA ligase OB-fold domain LYZ39_23115 PF02463 RecF/RecN/SMC N terminal domain LYZ39_23115 PF06470 SMC proteins Flexible Hinge Domain LYZ39_23120 PF07690 Major Facilitator Superfamily LYZ39_23125 PF03167 Uracil DNA glycosylase superfamily LYZ39_23130 PF00814 Glycoprotease family LYZ39_23135 PF00486 Transcriptional regulatory protein, C terminal LYZ39_23135 PF00072 Response regulator receiver domain LYZ39_23140 PF00672 HAMP domain LYZ39_23140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_23140 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_23145 PF00578 AhpC/TSA family LYZ39_23150 PF02627 Carboxymuconolactone decarboxylase family LYZ39_23160 PF02542 YgbB family LYZ39_23165 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LYZ39_23170 PF03461 TRCF domain LYZ39_23170 PF00271 Helicase conserved C-terminal domain LYZ39_23170 PF00270 DEAD/DEAH box helicase LYZ39_23170 PF02559 CarD-like/TRCF domain LYZ39_23170 PF17757 UvrB interaction domain LYZ39_23180 PF07715 TonB-dependent Receptor Plug Domain LYZ39_23180 PF00593 TonB dependent receptor LYZ39_23190 PF00361 Proton-conducting membrane transporter LYZ39_23195 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LYZ39_23195 PF00361 Proton-conducting membrane transporter LYZ39_23200 PF00361 Proton-conducting membrane transporter LYZ39_23200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LYZ39_23205 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LYZ39_23210 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LYZ39_23215 PF12838 4Fe-4S dicluster domain LYZ39_23220 PF00146 NADH dehydrogenase LYZ39_23225 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LYZ39_23225 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LYZ39_23225 PF00384 Molybdopterin oxidoreductase LYZ39_23230 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LYZ39_23230 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LYZ39_23230 PF10531 SLBB domain LYZ39_23240 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LYZ39_23245 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LYZ39_23250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LYZ39_23255 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LYZ39_23260 PF13609 Gram-negative porin LYZ39_23275 PF02153 Prephenate dehydrogenase LYZ39_23285 PF00149 Calcineurin-like phosphoesterase LYZ39_23290 PF00781 Diacylglycerol kinase catalytic domain LYZ39_23300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_23305 PF03466 LysR substrate binding domain LYZ39_23305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_23315 PF02321 Outer membrane efflux protein LYZ39_23320 PF00873 AcrB/AcrD/AcrF family LYZ39_23325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_23330 PF02028 BCCT, betaine/carnitine/choline family transporter LYZ39_23335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LYZ39_23345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_23350 PF00873 AcrB/AcrD/AcrF family LYZ39_23355 PF02321 Outer membrane efflux protein LYZ39_23370 PF01522 Polysaccharide deacetylase LYZ39_23385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_23390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_23400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_23400 PF00005 ABC transporter LYZ39_23405 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_23405 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_23410 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_23420 PF05661 Protein of unknown function (DUF808) LYZ39_23430 PF04405 Domain of Unknown function (DUF542) LYZ39_23430 PF01814 Hemerythrin HHE cation binding domain LYZ39_23435 PF02954 Bacterial regulatory protein, Fis family LYZ39_23435 PF00158 Sigma-54 interaction domain LYZ39_23440 PF00593 TonB dependent receptor LYZ39_23440 PF07715 TonB-dependent Receptor Plug Domain LYZ39_23440 PF07660 Secretin and TonB N terminus short domain LYZ39_23470 PF00313 'Cold-shock' DNA-binding domain LYZ39_23485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_23485 PF03466 LysR substrate binding domain LYZ39_23495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_23500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_23500 PF00005 ABC transporter LYZ39_23505 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_23515 PF03466 LysR substrate binding domain LYZ39_23515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_23520 PF00884 Sulfatase LYZ39_23540 PF00106 short chain dehydrogenase LYZ39_23545 PF03600 Citrate transporter LYZ39_23550 PF00486 Transcriptional regulatory protein, C terminal LYZ39_23550 PF00072 Response regulator receiver domain LYZ39_23555 PF08521 Two-component sensor kinase N-terminal LYZ39_23555 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_23555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_23570 PF00106 short chain dehydrogenase LYZ39_23575 PF06719 AraC-type transcriptional regulator N-terminus LYZ39_23575 PF12833 Helix-turn-helix domain LYZ39_23595 PF05987 Bacterial protein of unknown function (DUF898) LYZ39_23600 PF01435 Peptidase family M48 LYZ39_23610 PF00561 alpha/beta hydrolase fold LYZ39_23615 PF16123 Hydroxyacylglutathione hydrolase C-terminus LYZ39_23615 PF00753 Metallo-beta-lactamase superfamily LYZ39_23620 PF01804 Penicillin amidase LYZ39_23635 PF13086 AAA domain LYZ39_23635 PF13195 Protein of unknown function (DUF4011) LYZ39_23635 PF13087 AAA domain LYZ39_23635 PF13195 Protein of unknown function (DUF4011) LYZ39_23635 PF13086 AAA domain LYZ39_23635 PF13087 AAA domain LYZ39_23660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_23660 PF03466 LysR substrate binding domain LYZ39_23675 PF03466 LysR substrate binding domain LYZ39_23675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_23690 PF01266 FAD dependent oxidoreductase LYZ39_23695 PF01042 Endoribonuclease L-PSP LYZ39_23700 PF07171 MlrC C-terminus LYZ39_23700 PF07364 Metallopeptidase family M81 LYZ39_23705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_23710 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_23715 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_23720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_23720 PF00005 ABC transporter LYZ39_23725 PF00005 ABC transporter LYZ39_23725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_23730 PF07969 Amidohydrolase family LYZ39_23750 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_23755 PF01070 FMN-dependent dehydrogenase LYZ39_23760 PF07063 Domain of unknown function (DUF1338) LYZ39_23765 PF03466 LysR substrate binding domain LYZ39_23765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_23770 PF03840 Preprotein translocase SecG subunit LYZ39_23775 PF00121 Triosephosphate isomerase LYZ39_23780 PF00109 Beta-ketoacyl synthase, N-terminal domain LYZ39_23780 PF14765 Polyketide synthase dehydratase LYZ39_23780 PF00698 Acyl transferase domain LYZ39_23780 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_23780 PF16197 Ketoacyl-synthetase C-terminal extension LYZ39_23780 PF02801 Beta-ketoacyl synthase, C-terminal domain LYZ39_23780 PF00550 Phosphopantetheine attachment site LYZ39_23780 PF08659 KR domain LYZ39_23795 PF00682 HMGL-like LYZ39_23800 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_23805 PF02515 CoA-transferase family III LYZ39_23825 PF03466 LysR substrate binding domain LYZ39_23825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_23830 PF00795 Carbon-nitrogen hydrolase LYZ39_23860 PF00005 ABC transporter LYZ39_23870 PF03781 Sulfatase-modifying factor enzyme 1 LYZ39_23890 PF00375 Sodium:dicarboxylate symporter family LYZ39_23905 PF01970 Tripartite tricarboxylate transporter TctA family LYZ39_23915 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_23915 PF13291 ACT domain LYZ39_23925 PF01138 3' exoribonuclease family, domain 1 LYZ39_23925 PF03725 3' exoribonuclease family, domain 2 LYZ39_23925 PF00575 S1 RNA binding domain LYZ39_23925 PF00013 KH domain LYZ39_23925 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LYZ39_23930 PF00312 Ribosomal protein S15 LYZ39_23940 PF01066 CDP-alcohol phosphatidyltransferase LYZ39_23945 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LYZ39_23945 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LYZ39_23950 PF10369 Small subunit of acetolactate synthase LYZ39_23955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_23955 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_23955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_23960 PF12805 FUSC-like inner membrane protein yccS LYZ39_23965 PF03883 Peroxide stress protein YaaA LYZ39_23970 PF00106 short chain dehydrogenase LYZ39_23975 PF02254 TrkA-N domain LYZ39_23975 PF00999 Sodium/hydrogen exchanger family LYZ39_23985 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_23995 PF09339 IclR helix-turn-helix domain LYZ39_24000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_24000 PF00672 HAMP domain LYZ39_24000 PF02203 Tar ligand binding domain homologue LYZ39_24005 PF01613 Flavin reductase like domain LYZ39_24010 PF00795 Carbon-nitrogen hydrolase LYZ39_24015 PF07690 Major Facilitator Superfamily LYZ39_24015 PF00083 Sugar (and other) transporter LYZ39_24025 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_24035 PF13378 Enolase C-terminal domain-like LYZ39_24035 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LYZ39_24045 PF01979 Amidohydrolase family LYZ39_24075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LYZ39_24075 PF02403 Seryl-tRNA synthetase N-terminal domain LYZ39_24080 PF00004 ATPase family associated with various cellular activities (AAA) LYZ39_24080 PF12002 MgsA AAA+ ATPase C terminal LYZ39_24080 PF16193 AAA C-terminal domain LYZ39_24085 PF00795 Carbon-nitrogen hydrolase LYZ39_24095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_24100 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_24105 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_24105 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_24110 PF00005 ABC transporter LYZ39_24110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_24115 PF00005 ABC transporter LYZ39_24115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_24120 PF00571 CBS domain LYZ39_24120 PF01380 SIS domain LYZ39_24125 PF07969 Amidohydrolase family LYZ39_24130 PF01042 Endoribonuclease L-PSP LYZ39_24135 PF03548 Outer membrane lipoprotein carrier protein LolA LYZ39_24140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LYZ39_24140 PF17854 FtsK alpha domain LYZ39_24140 PF09397 Ftsk gamma domain LYZ39_24140 PF01580 FtsK/SpoIIIE family LYZ39_24145 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_24150 PF00488 MutS domain V LYZ39_24150 PF01713 Smr domain LYZ39_24155 PF00893 Small Multidrug Resistance protein LYZ39_24170 PF00474 Sodium:solute symporter family LYZ39_24185 PF03814 Potassium-transporting ATPase A subunit LYZ39_24195 PF02669 K+-transporting ATPase, c chain LYZ39_24200 PF13493 Domain of unknown function (DUF4118) LYZ39_24200 PF13492 GAF domain LYZ39_24200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_24200 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_24200 PF02702 Osmosensitive K+ channel His kinase sensor domain LYZ39_24205 PF00072 Response regulator receiver domain LYZ39_24205 PF00486 Transcriptional regulatory protein, C terminal LYZ39_24220 PF00701 Dihydrodipicolinate synthetase family LYZ39_24225 PF02203 Tar ligand binding domain homologue LYZ39_24225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_24225 PF00672 HAMP domain LYZ39_24235 PF00180 Isocitrate/isopropylmalate dehydrogenase LYZ39_24250 PF00034 Cytochrome c LYZ39_24255 PF00004 ATPase family associated with various cellular activities (AAA) LYZ39_24255 PF17862 AAA+ lid domain LYZ39_24255 PF01434 Peptidase family M41 LYZ39_24275 PF13302 Acetyltransferase (GNAT) domain LYZ39_24280 PF05193 Peptidase M16 inactive domain LYZ39_24280 PF00675 Insulinase (Peptidase family M16) LYZ39_24290 PF00226 DnaJ domain LYZ39_24290 PF01556 DnaJ C terminal domain LYZ39_24290 PF00684 DnaJ central domain LYZ39_24295 PF00012 Hsp70 protein LYZ39_24305 PF01025 GrpE LYZ39_24315 PF00762 Ferrochelatase LYZ39_24320 PF01628 HrcA protein C terminal domain LYZ39_24320 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LYZ39_24325 PF01513 ATP-NAD kinase LYZ39_24330 PF02463 RecF/RecN/SMC N terminal domain LYZ39_24335 PF01475 Ferric uptake regulator family LYZ39_24340 PF04355 SmpA / OmlA family LYZ39_24345 PF05173 Dihydrodipicolinate reductase, C-terminus LYZ39_24345 PF01113 Dihydrodipicolinate reductase, N-terminus LYZ39_24350 PF01565 FAD binding domain LYZ39_24350 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LYZ39_24390 PF03466 LysR substrate binding domain LYZ39_24390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_24395 PF00293 NUDIX domain LYZ39_24395 PF09297 NADH pyrophosphatase zinc ribbon domain LYZ39_24400 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LYZ39_24405 PF04377 Arginine-tRNA-protein transferase, C terminus LYZ39_24405 PF04376 Arginine-tRNA-protein transferase, N terminus LYZ39_24410 PF01180 Dihydroorotate dehydrogenase LYZ39_24420 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_24425 PF01614 Bacterial transcriptional regulator LYZ39_24425 PF09339 IclR helix-turn-helix domain LYZ39_24430 PF02464 Competence-damaged protein LYZ39_24430 PF18146 Damage-inducible protein CinA KH domain LYZ39_24430 PF00994 Probable molybdopterin binding domain LYZ39_24445 PF00270 DEAD/DEAH box helicase LYZ39_24445 PF00271 Helicase conserved C-terminal domain LYZ39_24460 PF01063 Amino-transferase class IV LYZ39_24475 PF00561 alpha/beta hydrolase fold LYZ39_24480 PF01435 Peptidase family M48 LYZ39_24480 PF13181 Tetratricopeptide repeat LYZ39_24485 PF00483 Nucleotidyl transferase LYZ39_24495 PF13609 Gram-negative porin LYZ39_24500 PF00690 Cation transporter/ATPase, N-terminus LYZ39_24500 PF00689 Cation transporting ATPase, C-terminus LYZ39_24515 PF05195 Aminopeptidase P, N-terminal domain LYZ39_24515 PF00557 Metallopeptidase family M24 LYZ39_24525 PF01494 FAD binding domain LYZ39_24530 PF01207 Dihydrouridine synthase (Dus) LYZ39_24535 PF02954 Bacterial regulatory protein, Fis family LYZ39_24540 PF01808 AICARFT/IMPCHase bienzyme LYZ39_24540 PF02142 MGS-like domain LYZ39_24545 PF02075 Crossover junction endodeoxyribonuclease RuvC LYZ39_24550 PF07499 RuvA, C-terminal domain LYZ39_24550 PF01330 RuvA N terminal domain LYZ39_24555 PF08338 Domain of unknown function (DUF1731) LYZ39_24555 PF01370 NAD dependent epimerase/dehydratase family LYZ39_24560 PF00291 Pyridoxal-phosphate dependent enzyme LYZ39_24565 PF05491 RuvB C-terminal winged helix domain LYZ39_24565 PF05496 Holliday junction DNA helicase RuvB P-loop domain LYZ39_24565 PF17864 RuvB AAA lid domain LYZ39_24570 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_24570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_24575 PF00072 Response regulator receiver domain LYZ39_24575 PF00486 Transcriptional regulatory protein, C terminal LYZ39_24585 PF00270 DEAD/DEAH box helicase LYZ39_24585 PF00271 Helicase conserved C-terminal domain LYZ39_24585 PF00570 HRDC domain LYZ39_24585 PF16124 RecQ zinc-binding LYZ39_24585 PF09382 RQC domain LYZ39_24600 PF00749 tRNA synthetases class I (E and Q), catalytic domain LYZ39_24600 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LYZ39_24605 PF05209 Septum formation inhibitor MinC, N-terminal domain LYZ39_24605 PF03775 Septum formation inhibitor MinC, C-terminal domain LYZ39_24610 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LYZ39_24615 PF03776 Septum formation topological specificity factor MinE LYZ39_24630 PF12848 ABC transporter LYZ39_24630 PF00005 ABC transporter LYZ39_24635 PF00892 EamA-like transporter family LYZ39_24650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_24650 PF00005 ABC transporter LYZ39_24655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_24655 PF00005 ABC transporter LYZ39_24660 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_24660 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_24665 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_24670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_24690 PF00111 2Fe-2S iron-sulfur cluster binding domain LYZ39_24695 PF00355 Rieske [2Fe-2S] domain LYZ39_24695 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LYZ39_24700 PF00866 Ring hydroxylating beta subunit LYZ39_24705 PF13193 AMP-binding enzyme C-terminal domain LYZ39_24705 PF00501 AMP-binding enzyme LYZ39_24720 PF04199 Putative cyclase LYZ39_24740 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_24740 PF00005 ABC transporter LYZ39_24745 PF00005 ABC transporter LYZ39_24750 PF00535 Glycosyl transferase family 2 LYZ39_24755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_24755 PF03466 LysR substrate binding domain LYZ39_24760 PF00294 pfkB family carbohydrate kinase LYZ39_24765 PF01081 KDPG and KHG aldolase LYZ39_24775 PF17755 UvrA DNA-binding domain LYZ39_24775 PF00005 ABC transporter LYZ39_24775 PF17760 UvrA interaction domain LYZ39_24780 PF04715 Anthranilate synthase component I, N terminal region LYZ39_24780 PF00425 chorismate binding enzyme LYZ39_24790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_24790 PF03466 LysR substrate binding domain LYZ39_24795 PF00355 Rieske [2Fe-2S] domain LYZ39_24795 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LYZ39_24800 PF13577 SnoaL-like domain LYZ39_24805 PF00355 Rieske [2Fe-2S] domain LYZ39_24810 PF00899 ThiF family LYZ39_24815 PF02321 Outer membrane efflux protein LYZ39_24820 PF00005 ABC transporter LYZ39_24820 PF12704 MacB-like periplasmic core domain LYZ39_24820 PF02687 FtsX-like permease family LYZ39_24825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LYZ39_24840 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LYZ39_24840 PF01243 Pyridoxamine 5'-phosphate oxidase LYZ39_24845 PF01613 Flavin reductase like domain LYZ39_24850 PF01266 FAD dependent oxidoreductase LYZ39_24855 PF00551 Formyl transferase LYZ39_24860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_24860 PF03466 LysR substrate binding domain LYZ39_24865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_24865 PF18158 Adaptive response protein AidB N-terminal domain LYZ39_24865 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_24870 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_24875 PF02515 CoA-transferase family III LYZ39_24880 PF13520 Amino acid permease LYZ39_24890 PF03466 LysR substrate binding domain LYZ39_24890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_24895 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_24900 PF10415 Fumarase C C-terminus LYZ39_24900 PF00206 Lyase LYZ39_24905 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LYZ39_24910 PF01520 N-acetylmuramoyl-L-alanine amidase LYZ39_24910 PF11741 AMIN domain LYZ39_24915 PF09335 SNARE associated Golgi protein LYZ39_24920 PF08676 MutL C terminal dimerisation domain LYZ39_24920 PF01119 DNA mismatch repair protein, C-terminal domain LYZ39_24930 PF00586 AIR synthase related protein, N-terminal domain LYZ39_24930 PF02769 AIR synthase related protein, C-terminal domain LYZ39_24935 PF00308 Bacterial dnaA protein LYZ39_24945 PF12627 Probable RNA and SrmB- binding site of polymerase A LYZ39_24945 PF12626 Polymerase A arginine-rich C-terminus LYZ39_24945 PF01743 Poly A polymerase head domain LYZ39_24950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LYZ39_24955 PF00294 pfkB family carbohydrate kinase LYZ39_24960 PF03328 HpcH/HpaI aldolase/citrate lyase family LYZ39_24965 PF02515 CoA-transferase family III LYZ39_24975 PF03466 LysR substrate binding domain LYZ39_24975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_24980 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_24985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_24985 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_24985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_24990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_24990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_24990 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_25000 PF02803 Thiolase, C-terminal domain LYZ39_25000 PF00108 Thiolase, N-terminal domain LYZ39_25005 PF13193 AMP-binding enzyme C-terminal domain LYZ39_25005 PF00501 AMP-binding enzyme LYZ39_25010 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_25020 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_25030 PF00106 short chain dehydrogenase LYZ39_25035 PF01575 MaoC like domain LYZ39_25040 PF02515 CoA-transferase family III LYZ39_25060 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_25065 PF02091 Glycyl-tRNA synthetase alpha subunit LYZ39_25070 PF02092 Glycyl-tRNA synthetase beta subunit LYZ39_25070 PF05746 DALR anticodon binding domain LYZ39_25080 PF01553 Acyltransferase LYZ39_25090 PF00266 Aminotransferase class-V LYZ39_25095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LYZ39_25100 PF01327 Polypeptide deformylase LYZ39_25105 PF09317 Domain of unknown function (DUF1974) LYZ39_25105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_25105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_25105 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_25110 PF07670 Nucleoside recognition LYZ39_25115 PF00224 Pyruvate kinase, barrel domain LYZ39_25115 PF02887 Pyruvate kinase, alpha/beta domain LYZ39_25120 PF02595 Glycerate kinase family LYZ39_25125 PF00398 Ribosomal RNA adenine dimethylase LYZ39_25130 PF00639 PPIC-type PPIASE domain LYZ39_25130 PF09312 SurA N-terminal domain LYZ39_25135 PF04453 LPS transport system D LYZ39_25140 PF01636 Phosphotransferase enzyme family LYZ39_25145 PF00483 Nucleotidyl transferase LYZ39_25155 PF01494 FAD binding domain LYZ39_25170 PF01329 Pterin 4 alpha carbinolamine dehydratase LYZ39_25175 PF00691 OmpA family LYZ39_25175 PF04972 BON domain LYZ39_25200 PF01032 FecCD transport family LYZ39_25205 PF00005 ABC transporter LYZ39_25220 PF01497 Periplasmic binding protein LYZ39_25240 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_25245 PF05170 AsmA family LYZ39_25250 PF00884 Sulfatase LYZ39_25255 PF03352 Methyladenine glycosylase LYZ39_25260 PF03692 Putative zinc- or iron-chelating domain LYZ39_25270 PF01475 Ferric uptake regulator family LYZ39_25290 PF01734 Patatin-like phospholipase LYZ39_25300 PF00012 Hsp70 protein LYZ39_25305 PF03544 Gram-negative bacterial TonB protein C-terminal LYZ39_25375 PF00589 Phage integrase family LYZ39_25385 PF03180 NLPA lipoprotein LYZ39_25390 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_25395 PF00005 ABC transporter LYZ39_25395 PF09383 NIL domain LYZ39_25400 PF13802 Galactose mutarotase-like LYZ39_25400 PF01055 Glycosyl hydrolases family 31 LYZ39_25405 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LYZ39_25405 PF01266 FAD dependent oxidoreductase LYZ39_25410 PF00459 Inositol monophosphatase family LYZ39_25415 PF00501 AMP-binding enzyme LYZ39_25415 PF13193 AMP-binding enzyme C-terminal domain LYZ39_25420 PF07687 Peptidase dimerisation domain LYZ39_25420 PF01546 Peptidase family M20/M25/M40 LYZ39_25425 PF03466 LysR substrate binding domain LYZ39_25425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_25430 PF03601 Conserved hypothetical protein 698 LYZ39_25435 PF03061 Thioesterase superfamily LYZ39_25440 PF03448 MgtE intracellular N domain LYZ39_25440 PF01769 Divalent cation transporter LYZ39_25440 PF00571 CBS domain LYZ39_25445 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LYZ39_25455 PF01037 Lrp/AsnC ligand binding domain LYZ39_25470 PF00205 Thiamine pyrophosphate enzyme, central domain LYZ39_25470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LYZ39_25470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LYZ39_25475 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_25480 PF07729 FCD domain LYZ39_25480 PF00392 Bacterial regulatory proteins, gntR family LYZ39_25490 PF02810 SEC-C motif LYZ39_25490 PF07517 SecA DEAD-like domain LYZ39_25490 PF01043 SecA preprotein cross-linking domain LYZ39_25490 PF07516 SecA Wing and Scaffold domain LYZ39_25495 PF01551 Peptidase family M23 LYZ39_25495 PF01476 LysM domain LYZ39_25495 PF08525 Opacity-associated protein A N-terminal motif LYZ39_25505 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LYZ39_25510 PF12327 FtsZ family, C-terminal domain LYZ39_25510 PF00091 Tubulin/FtsZ family, GTPase domain LYZ39_25515 PF02491 SHS2 domain inserted in FTSA LYZ39_25520 PF03799 Cell division protein FtsQ LYZ39_25520 PF08478 POTRA domain, FtsQ-type LYZ39_25525 PF07478 D-ala D-ala ligase C-terminus LYZ39_25525 PF01820 D-ala D-ala ligase N-terminus LYZ39_25530 PF08245 Mur ligase middle domain LYZ39_25530 PF01225 Mur ligase family, catalytic domain LYZ39_25530 PF02875 Mur ligase family, glutamate ligase domain LYZ39_25535 PF03033 Glycosyltransferase family 28 N-terminal domain LYZ39_25535 PF04101 Glycosyltransferase family 28 C-terminal domain LYZ39_25540 PF01098 Cell cycle protein LYZ39_25545 PF02875 Mur ligase family, glutamate ligase domain LYZ39_25545 PF08245 Mur ligase middle domain LYZ39_25550 PF00953 Glycosyl transferase family 4 LYZ39_25555 PF02875 Mur ligase family, glutamate ligase domain LYZ39_25555 PF08245 Mur ligase middle domain LYZ39_25560 PF03717 Penicillin-binding Protein dimerisation domain LYZ39_25560 PF00905 Penicillin binding protein transpeptidase domain LYZ39_25565 PF04999 Cell division protein FtsL LYZ39_25570 PF01795 MraW methylase family LYZ39_25575 PF02381 MraZ protein, putative antitoxin-like LYZ39_25585 PF12848 ABC transporter LYZ39_25585 PF16326 ABC transporter C-terminal domain LYZ39_25585 PF00005 ABC transporter LYZ39_25590 PF01979 Amidohydrolase family LYZ39_25595 PF01546 Peptidase family M20/M25/M40 LYZ39_25595 PF07687 Peptidase dimerisation domain LYZ39_25655 PF01037 Lrp/AsnC ligand binding domain LYZ39_25660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LYZ39_25665 PF01625 Peptide methionine sulfoxide reductase LYZ39_25670 PF00034 Cytochrome c LYZ39_25675 PF00920 Dehydratase family LYZ39_25680 PF01790 Prolipoprotein diacylglyceryl transferase LYZ39_25710 PF01970 Tripartite tricarboxylate transporter TctA family LYZ39_25720 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LYZ39_25720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LYZ39_25725 PF02525 Flavodoxin-like fold LYZ39_25730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_25730 PF03466 LysR substrate binding domain LYZ39_25735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_25740 PF01970 Tripartite tricarboxylate transporter TctA family LYZ39_25750 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_25750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_25755 PF00486 Transcriptional regulatory protein, C terminal LYZ39_25755 PF00072 Response regulator receiver domain LYZ39_25760 PF00293 NUDIX domain LYZ39_25765 PF03129 Anticodon binding domain LYZ39_25765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LYZ39_25765 PF04073 Aminoacyl-tRNA editing domain LYZ39_25770 PF03061 Thioesterase superfamily LYZ39_25775 PF01618 MotA/TolQ/ExbB proton channel family LYZ39_25780 PF02472 Biopolymer transport protein ExbD/TolR LYZ39_25790 PF07676 WD40-like Beta Propeller Repeat LYZ39_25790 PF04052 TolB amino-terminal domain LYZ39_25795 PF00691 OmpA family LYZ39_25805 PF01032 FecCD transport family LYZ39_25810 PF00005 ABC transporter LYZ39_25825 PF01037 Lrp/AsnC ligand binding domain LYZ39_25835 PF03764 Elongation factor G, domain IV LYZ39_25835 PF00009 Elongation factor Tu GTP binding domain LYZ39_25835 PF03144 Elongation factor Tu domain 2 LYZ39_25835 PF00679 Elongation factor G C-terminus LYZ39_25835 PF14492 Elongation Factor G, domain II LYZ39_25840 PF00582 Universal stress protein family LYZ39_25850 PF00392 Bacterial regulatory proteins, gntR family LYZ39_25850 PF00155 Aminotransferase class I and II LYZ39_25855 PF00892 EamA-like transporter family LYZ39_25860 PF01810 LysE type translocator LYZ39_25865 PF04172 LrgB-like family LYZ39_25870 PF03788 LrgA family LYZ39_25875 PF03466 LysR substrate binding domain LYZ39_25875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_25890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_25890 PF03466 LysR substrate binding domain LYZ39_25905 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LYZ39_25910 PF00535 Glycosyl transferase family 2 LYZ39_25920 PF03616 Sodium/glutamate symporter LYZ39_25935 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LYZ39_25950 PF00929 Exonuclease LYZ39_25955 PF00873 AcrB/AcrD/AcrF family LYZ39_25965 PF00075 RNase H LYZ39_25970 PF08241 Methyltransferase domain LYZ39_25975 PF00753 Metallo-beta-lactamase superfamily LYZ39_25975 PF16123 Hydroxyacylglutathione hydrolase C-terminus LYZ39_25980 PF01476 LysM domain LYZ39_25980 PF01464 Transglycosylase SLT domain LYZ39_26000 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_26005 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LYZ39_26005 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LYZ39_26020 PF01740 STAS domain LYZ39_26025 PF13581 Histidine kinase-like ATPase domain LYZ39_26030 PF00842 Alanine racemase, C-terminal domain LYZ39_26030 PF01168 Alanine racemase, N-terminal domain LYZ39_26040 PF00672 HAMP domain LYZ39_26040 PF07228 Stage II sporulation protein E (SpoIIE) LYZ39_26055 PF08281 Sigma-70, region 4 LYZ39_26055 PF04542 Sigma-70 region 2 LYZ39_26060 PF03958 Bacterial type II/III secretion system short domain LYZ39_26060 PF00263 Bacterial type II and III secretion system protein LYZ39_26070 PF01312 FlhB HrpN YscU SpaS Family LYZ39_26075 PF01311 Bacterial export proteins, family 1 LYZ39_26080 PF01313 Bacterial export proteins, family 3 LYZ39_26085 PF00813 FliP family LYZ39_26090 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LYZ39_26105 PF02874 ATP synthase alpha/beta family, beta-barrel domain LYZ39_26105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LYZ39_26105 PF18269 T3SS EscN ATPase C-terminal domain LYZ39_26110 PF02108 Flagellar assembly protein FliH LYZ39_26120 PF01514 Secretory protein of YscJ/FliF family LYZ39_26190 PF00771 FHIPEP family LYZ39_26235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_26235 PF03466 LysR substrate binding domain LYZ39_26240 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_26250 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_26255 PF02515 CoA-transferase family III LYZ39_26260 PF00682 HMGL-like LYZ39_26265 PF03466 LysR substrate binding domain LYZ39_26265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_26280 PF04293 SpoVR like protein LYZ39_26285 PF04285 Protein of unknown function (DUF444) LYZ39_26290 PF08298 PrkA AAA domain LYZ39_26290 PF06798 PrkA serine protein kinase C-terminal domain LYZ39_26305 PF01872 RibD C-terminal domain LYZ39_26305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LYZ39_26315 PF12833 Helix-turn-helix domain LYZ39_26320 PF03477 ATP cone domain LYZ39_26325 PF00464 Serine hydroxymethyltransferase LYZ39_26335 PF01161 Phosphatidylethanolamine-binding protein LYZ39_26340 PF01479 S4 domain LYZ39_26340 PF00579 tRNA synthetases class I (W and Y) LYZ39_26345 PF01551 Peptidase family M23 LYZ39_26345 PF08460 Bacterial SH3 domain LYZ39_26350 PF03702 Anhydro-N-acetylmuramic acid kinase LYZ39_26355 PF01521 Iron-sulphur cluster biosynthesis LYZ39_26365 PF01118 Semialdehyde dehydrogenase, NAD binding domain LYZ39_26365 PF02774 Semialdehyde dehydrogenase, dimerisation domain LYZ39_26370 PF00380 Ribosomal protein S9/S16 LYZ39_26375 PF00572 Ribosomal protein L13 LYZ39_26380 PF00005 ABC transporter LYZ39_26385 PF00005 ABC transporter LYZ39_26385 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_26390 PF02653 Branched-chain amino acid transport system / permease component LYZ39_26390 PF11862 Domain of unknown function (DUF3382) LYZ39_26395 PF02653 Branched-chain amino acid transport system / permease component LYZ39_26400 PF13458 Periplasmic binding protein LYZ39_26405 PF03480 Bacterial extracellular solute-binding protein, family 7 LYZ39_26410 PF01523 Putative modulator of DNA gyrase LYZ39_26415 PF04751 Protein of unknown function (DUF615) LYZ39_26420 PF02230 Phospholipase/Carboxylesterase LYZ39_26430 PF00005 ABC transporter LYZ39_26435 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_26440 PF00857 Isochorismatase family LYZ39_26445 PF00583 Acetyltransferase (GNAT) family LYZ39_26445 PF13380 CoA binding domain LYZ39_26445 PF13607 Succinyl-CoA ligase like flavodoxin domain LYZ39_26450 PF00749 tRNA synthetases class I (E and Q), catalytic domain LYZ39_26465 PF03466 LysR substrate binding domain LYZ39_26465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_26475 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_26480 PF01037 Lrp/AsnC ligand binding domain LYZ39_26490 PF03477 ATP cone domain LYZ39_26490 PF02867 Ribonucleotide reductase, barrel domain LYZ39_26490 PF00317 Ribonucleotide reductase, all-alpha domain LYZ39_26495 PF00268 Ribonucleotide reductase, small chain LYZ39_26510 PF00501 AMP-binding enzyme LYZ39_26510 PF13193 AMP-binding enzyme C-terminal domain LYZ39_26515 PF03062 MBOAT, membrane-bound O-acyltransferase family LYZ39_26540 PF00294 pfkB family carbohydrate kinase LYZ39_26540 PF01467 Cytidylyltransferase-like LYZ39_26555 PF00289 Biotin carboxylase, N-terminal domain LYZ39_26555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LYZ39_26555 PF02785 Biotin carboxylase C-terminal domain LYZ39_26560 PF00364 Biotin-requiring enzyme LYZ39_26565 PF01220 Dehydroquinase class II LYZ39_26570 PF08534 Redoxin LYZ39_26575 PF08245 Mur ligase middle domain LYZ39_26575 PF01225 Mur ligase family, catalytic domain LYZ39_26575 PF02875 Mur ligase family, glutamate ligase domain LYZ39_26580 PF05728 Uncharacterised protein family (UPF0227) LYZ39_26585 PF00773 RNB domain LYZ39_26590 PF00486 Transcriptional regulatory protein, C terminal LYZ39_26590 PF00072 Response regulator receiver domain LYZ39_26595 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_26595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_26605 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_26610 PF08402 TOBE domain LYZ39_26610 PF00005 ABC transporter LYZ39_26620 PF08501 Shikimate dehydrogenase substrate binding domain LYZ39_26620 PF01488 Shikimate / quinate 5-dehydrogenase LYZ39_26620 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LYZ39_26625 PF00912 Transglycosylase LYZ39_26635 PF00149 Calcineurin-like phosphoesterase LYZ39_26640 PF01553 Acyltransferase LYZ39_26645 PF01979 Amidohydrolase family LYZ39_26650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LYZ39_26650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LYZ39_26655 PF03652 Holliday junction resolvase LYZ39_26660 PF02622 Uncharacterized ACR, COG1678 LYZ39_26665 PF00301 Rubredoxin LYZ39_26670 PF08543 Phosphomethylpyrimidine kinase LYZ39_26675 PF02581 Thiamine monophosphate synthase LYZ39_26680 PF00202 Aminotransferase class-III LYZ39_26685 PF01464 Transglycosylase SLT domain LYZ39_26700 PF00857 Isochorismatase family LYZ39_26705 PF00866 Ring hydroxylating beta subunit LYZ39_26710 PF00355 Rieske [2Fe-2S] domain LYZ39_26710 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LYZ39_26715 PF01738 Dienelactone hydrolase family LYZ39_26725 PF14525 AraC-binding-like domain LYZ39_26725 PF12833 Helix-turn-helix domain LYZ39_26740 PF00501 AMP-binding enzyme LYZ39_26740 PF13193 AMP-binding enzyme C-terminal domain LYZ39_26745 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_26745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_26745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_26750 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_26760 PF01494 FAD binding domain LYZ39_26765 PF13426 PAS domain LYZ39_26765 PF00563 EAL domain LYZ39_26765 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_26770 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_26775 PF09345 Domain of unknown function (DUF1987) LYZ39_26790 PF00005 ABC transporter LYZ39_26795 PF00005 ABC transporter LYZ39_26795 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_26800 PF11862 Domain of unknown function (DUF3382) LYZ39_26800 PF02653 Branched-chain amino acid transport system / permease component LYZ39_26805 PF02653 Branched-chain amino acid transport system / permease component LYZ39_26815 PF07859 alpha/beta hydrolase fold LYZ39_26830 PF01960 ArgJ family LYZ39_26840 PF00293 NUDIX domain LYZ39_26845 PF00005 ABC transporter LYZ39_26850 PF00005 ABC transporter LYZ39_26850 PF12399 Branched-chain amino acid ATP-binding cassette transporter LYZ39_26855 PF02653 Branched-chain amino acid transport system / permease component LYZ39_26865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_26865 PF03466 LysR substrate binding domain LYZ39_26870 PF13458 Periplasmic binding protein LYZ39_26875 PF01425 Amidase LYZ39_26885 PF07969 Amidohydrolase family LYZ39_26890 PF01266 FAD dependent oxidoreductase LYZ39_26895 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_26900 PF02321 Outer membrane efflux protein LYZ39_26905 PF00873 AcrB/AcrD/AcrF family LYZ39_26910 PF00873 AcrB/AcrD/AcrF family LYZ39_26915 PF13533 Biotin-lipoyl like LYZ39_26920 PF07072 Cell division protein LYZ39_26925 PF01121 Dephospho-CoA kinase LYZ39_26930 PF06750 Bacterial Peptidase A24 N-terminal domain LYZ39_26930 PF01478 Type IV leader peptidase family LYZ39_26945 PF02569 Pantoate-beta-alanine ligase LYZ39_26950 PF02616 Segregation and condensation protein ScpA LYZ39_26960 PF07690 Major Facilitator Superfamily LYZ39_26965 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LYZ39_26965 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LYZ39_26975 PF00633 Helix-hairpin-helix motif LYZ39_26975 PF00730 HhH-GPD superfamily base excision DNA repair protein LYZ39_26975 PF14815 NUDIX domain LYZ39_26975 PF10576 Iron-sulfur binding domain of endonuclease III LYZ39_26985 PF08241 Methyltransferase domain LYZ39_26990 PF01232 Mannitol dehydrogenase Rossmann domain LYZ39_26990 PF08125 Mannitol dehydrogenase C-terminal domain LYZ39_26995 PF13378 Enolase C-terminal domain-like LYZ39_26995 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LYZ39_27000 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_27000 PF00107 Zinc-binding dehydrogenase LYZ39_27005 PF07729 FCD domain LYZ39_27005 PF00392 Bacterial regulatory proteins, gntR family LYZ39_27010 PF02607 B12 binding domain LYZ39_27010 PF02965 Vitamin B12 dependent methionine synthase, activation domain LYZ39_27010 PF00809 Pterin binding enzyme LYZ39_27010 PF02574 Homocysteine S-methyltransferase LYZ39_27010 PF02310 B12 binding domain LYZ39_27015 PF07715 TonB-dependent Receptor Plug Domain LYZ39_27015 PF00593 TonB dependent receptor LYZ39_27020 PF01497 Periplasmic binding protein LYZ39_27025 PF05690 Thiazole biosynthesis protein ThiG LYZ39_27030 PF08543 Phosphomethylpyrimidine kinase LYZ39_27040 PF02321 Outer membrane efflux protein LYZ39_27045 PF01467 Cytidylyltransferase-like LYZ39_27055 PF03109 ABC1 family LYZ39_27070 PF01209 ubiE/COQ5 methyltransferase family LYZ39_27075 PF00072 Response regulator receiver domain LYZ39_27075 PF00486 Transcriptional regulatory protein, C terminal LYZ39_27080 PF11808 Phosphate regulon sensor protein PhoR LYZ39_27080 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_27080 PF00989 PAS fold LYZ39_27080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_27085 PF00072 Response regulator receiver domain LYZ39_27085 PF00486 Transcriptional regulatory protein, C terminal LYZ39_27090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LYZ39_27090 PF00672 HAMP domain LYZ39_27090 PF00512 His Kinase A (phospho-acceptor) domain LYZ39_27095 PF00127 Copper binding proteins, plastocyanin/azurin family LYZ39_27100 PF07731 Multicopper oxidase LYZ39_27100 PF00394 Multicopper oxidase LYZ39_27100 PF07732 Multicopper oxidase LYZ39_27105 PF05275 Copper resistance protein B precursor (CopB) LYZ39_27115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LYZ39_27115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_27115 PF01842 ACT domain LYZ39_27120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_27120 PF03466 LysR substrate binding domain LYZ39_27135 PF02682 Carboxyltransferase domain, subdomain C and D LYZ39_27140 PF02626 Carboxyltransferase domain, subdomain A and B LYZ39_27145 PF03746 LamB/YcsF family LYZ39_27150 PF07729 FCD domain LYZ39_27150 PF00392 Bacterial regulatory proteins, gntR family LYZ39_27155 PF03458 UPF0126 domain LYZ39_27165 PF07690 Major Facilitator Superfamily LYZ39_27170 PF00561 alpha/beta hydrolase fold LYZ39_27170 PF07021 Methionine biosynthesis protein MetW LYZ39_27175 PF00561 alpha/beta hydrolase fold LYZ39_27180 PF00392 Bacterial regulatory proteins, gntR family LYZ39_27180 PF07702 UTRA domain LYZ39_27185 PF08666 SAF domain LYZ39_27190 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LYZ39_27195 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_27200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_27200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LYZ39_27205 PF02615 Malate/L-lactate dehydrogenase LYZ39_27215 PF03472 Autoinducer binding domain LYZ39_27215 PF00196 Bacterial regulatory proteins, luxR family LYZ39_27230 PF04262 Glutamate-cysteine ligase LYZ39_27245 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_27250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_27250 PF03466 LysR substrate binding domain LYZ39_27260 PF01557 Fumarylacetoacetate (FAA) hydrolase family LYZ39_27265 PF07883 Cupin domain LYZ39_27290 PF12951 Passenger-associated-transport-repeat LYZ39_27300 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LYZ39_27305 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LYZ39_27305 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LYZ39_27305 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LYZ39_27310 PF02515 CoA-transferase family III LYZ39_27315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_27315 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_27315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_27325 PF03060 Nitronate monooxygenase LYZ39_27330 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_27335 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_27340 PF01256 Carbohydrate kinase LYZ39_27350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_27355 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LYZ39_27360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_27365 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_27370 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_27370 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_27375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_27375 PF00005 ABC transporter LYZ39_27380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_27380 PF00005 ABC transporter LYZ39_27390 PF07687 Peptidase dimerisation domain LYZ39_27390 PF01546 Peptidase family M20/M25/M40 LYZ39_27395 PF14602 Hexapeptide repeat of succinyl-transferase LYZ39_27395 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle LYZ39_27405 PF01380 SIS domain LYZ39_27410 PF00580 UvrD/REP helicase N-terminal domain LYZ39_27410 PF13361 UvrD-like helicase C-terminal domain LYZ39_27415 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LYZ39_27415 PF00271 Helicase conserved C-terminal domain LYZ39_27415 PF17764 3′ DNA-binding domain (3′BD) LYZ39_27415 PF18074 Primosomal protein N C-terminal domain LYZ39_27415 PF00270 DEAD/DEAH box helicase LYZ39_27420 PF01208 Uroporphyrinogen decarboxylase (URO-D) LYZ39_27430 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LYZ39_27435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LYZ39_27435 PF02874 ATP synthase alpha/beta family, beta-barrel domain LYZ39_27440 PF00231 ATP synthase LYZ39_27445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LYZ39_27445 PF00306 ATP synthase alpha/beta chain, C terminal domain LYZ39_27445 PF02874 ATP synthase alpha/beta family, beta-barrel domain LYZ39_27450 PF00213 ATP synthase delta (OSCP) subunit LYZ39_27455 PF00430 ATP synthase B/B' CF(0) LYZ39_27460 PF00137 ATP synthase subunit C LYZ39_27465 PF00119 ATP synthase A chain LYZ39_27480 PF00378 Enoyl-CoA hydratase/isomerase LYZ39_27485 PF13180 PDZ domain LYZ39_27490 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_27495 PF01144 Coenzyme A transferase LYZ39_27500 PF01144 Coenzyme A transferase LYZ39_27505 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_27515 PF12146 Serine aminopeptidase, S33 LYZ39_27520 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_27530 PF01171 PP-loop family LYZ39_27535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LYZ39_27535 PF01842 ACT domain LYZ39_27535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LYZ39_27540 PF10411 Disulfide bond isomerase protein N-terminus LYZ39_27540 PF13098 Thioredoxin-like domain LYZ39_27545 PF01494 FAD binding domain LYZ39_27550 PF06725 3D domain LYZ39_27550 PF03562 MltA specific insert domain LYZ39_27555 PF04379 ApaG domain LYZ39_27560 PF00834 Ribulose-phosphate 3 epimerase family LYZ39_27565 PF13419 Haloacid dehalogenase-like hydrolase LYZ39_27570 PF04715 Anthranilate synthase component I, N terminal region LYZ39_27570 PF00425 chorismate binding enzyme LYZ39_27575 PF00117 Glutamine amidotransferase class-I LYZ39_27580 PF02885 Glycosyl transferase family, helical bundle domain LYZ39_27580 PF00591 Glycosyl transferase family, a/b domain LYZ39_27585 PF00218 Indole-3-glycerol phosphate synthase LYZ39_27590 PF01590 GAF domain LYZ39_27590 PF00158 Sigma-54 interaction domain LYZ39_27590 PF02954 Bacterial regulatory protein, Fis family LYZ39_27595 PF00171 Aldehyde dehydrogenase family LYZ39_27610 PF01323 DSBA-like thioredoxin domain LYZ39_27620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_27620 PF03466 LysR substrate binding domain LYZ39_27625 PF00586 AIR synthase related protein, N-terminal domain LYZ39_27625 PF02769 AIR synthase related protein, C-terminal domain LYZ39_27630 PF01841 Transglutaminase-like superfamily LYZ39_27635 PF08534 Redoxin LYZ39_27645 PF00009 Elongation factor Tu GTP binding domain LYZ39_27645 PF03144 Elongation factor Tu domain 2 LYZ39_27645 PF09106 Elongation factor SelB, winged helix LYZ39_27645 PF09107 Elongation factor SelB, winged helix LYZ39_27650 PF12390 Selenocysteine synthase N terminal LYZ39_27650 PF03841 L-seryl-tRNA selenium transferase LYZ39_27655 PF04216 Protein involved in formate dehydrogenase formation LYZ39_27660 PF01292 Prokaryotic cytochrome b561 LYZ39_27665 PF12800 4Fe-4S binding domain LYZ39_27665 PF13247 4Fe-4S dicluster domain LYZ39_27665 PF09163 Formate dehydrogenase N, transmembrane LYZ39_27680 PF03061 Thioesterase superfamily LYZ39_27705 PF11737 Protein of unknown function (DUF3300) LYZ39_27710 PF03459 TOBE domain LYZ39_27715 PF00005 ABC transporter LYZ39_27720 PF03180 NLPA lipoprotein LYZ39_27725 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_27730 PF00005 ABC transporter LYZ39_27730 PF09383 NIL domain LYZ39_27735 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_27735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_27740 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_27745 PF00296 Luciferase-like monooxygenase LYZ39_27750 PF03358 NADPH-dependent FMN reductase LYZ39_27755 PF03180 NLPA lipoprotein LYZ39_27760 PF00296 Luciferase-like monooxygenase LYZ39_27765 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_27765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_27770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_27770 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_27780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_27785 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_27790 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_27790 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_27795 PF00005 ABC transporter LYZ39_27795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_27800 PF00582 Universal stress protein family LYZ39_27805 PF00970 Oxidoreductase FAD-binding domain LYZ39_27805 PF00175 Oxidoreductase NAD-binding domain LYZ39_27805 PF00111 2Fe-2S iron-sulfur cluster binding domain LYZ39_27815 PF00171 Aldehyde dehydrogenase family LYZ39_27830 PF07729 FCD domain LYZ39_27830 PF00392 Bacterial regulatory proteins, gntR family LYZ39_27875 PF07690 Major Facilitator Superfamily LYZ39_27880 PF00672 HAMP domain LYZ39_27880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LYZ39_27880 PF02203 Tar ligand binding domain homologue LYZ39_27890 PF01979 Amidohydrolase family LYZ39_27895 PF00221 Aromatic amino acid lyase LYZ39_27900 PF17391 Urocanase N-terminal domain LYZ39_27900 PF17392 Urocanase C-terminal domain LYZ39_27900 PF01175 Urocanase Rossmann-like domain LYZ39_27905 PF05962 HutD LYZ39_27910 PF00392 Bacterial regulatory proteins, gntR family LYZ39_27910 PF07702 UTRA domain LYZ39_27915 PF02583 Metal-sensitive transcriptional repressor LYZ39_27920 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_27920 PF00107 Zinc-binding dehydrogenase LYZ39_27935 PF01926 50S ribosome-binding GTPase LYZ39_27940 PF08447 PAS fold LYZ39_27940 PF00563 EAL domain LYZ39_27940 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_27940 PF08448 PAS fold LYZ39_27950 PF02146 Sir2 family LYZ39_27960 PF00563 EAL domain LYZ39_27960 PF00990 Diguanylate cyclase, GGDEF domain LYZ39_27960 PF13188 PAS domain LYZ39_27960 PF03707 Bacterial signalling protein N terminal repeat LYZ39_27970 PF02423 Ornithine cyclodeaminase/mu-crystallin family LYZ39_27975 PF01037 Lrp/AsnC ligand binding domain LYZ39_27980 PF01979 Amidohydrolase family LYZ39_27985 PF00795 Carbon-nitrogen hydrolase LYZ39_27990 PF03466 LysR substrate binding domain LYZ39_27990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_27995 PF01177 Asp/Glu/Hydantoin racemase LYZ39_28000 PF00005 ABC transporter LYZ39_28000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_28005 PF01979 Amidohydrolase family LYZ39_28010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_28015 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_28015 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_28020 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_28025 PF02423 Ornithine cyclodeaminase/mu-crystallin family LYZ39_28030 PF03466 LysR substrate binding domain LYZ39_28030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_28035 PF07690 Major Facilitator Superfamily LYZ39_28040 PF00171 Aldehyde dehydrogenase family LYZ39_28045 PF08240 Alcohol dehydrogenase GroES-like domain LYZ39_28045 PF00107 Zinc-binding dehydrogenase LYZ39_28055 PF00072 Response regulator receiver domain LYZ39_28055 PF00196 Bacterial regulatory proteins, luxR family LYZ39_28065 PF03466 LysR substrate binding domain LYZ39_28065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_28070 PF00248 Aldo/keto reductase family LYZ39_28075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LYZ39_28080 PF03466 LysR substrate binding domain LYZ39_28080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_28085 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_28090 PF01425 Amidase LYZ39_28095 PF05643 Putative bacterial lipoprotein (DUF799) LYZ39_28105 PF03783 Curli production assembly/transport component CsgG LYZ39_28140 PF03741 Integral membrane protein TerC family LYZ39_28145 PF03466 LysR substrate binding domain LYZ39_28145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_28160 PF00561 alpha/beta hydrolase fold LYZ39_28170 PF01966 HD domain LYZ39_28180 PF02954 Bacterial regulatory protein, Fis family LYZ39_28180 PF00158 Sigma-54 interaction domain LYZ39_28180 PF01590 GAF domain LYZ39_28185 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_28205 PF01380 SIS domain LYZ39_28210 PF01037 Lrp/AsnC ligand binding domain LYZ39_28220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LYZ39_28220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LYZ39_28220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LYZ39_28225 PF07690 Major Facilitator Superfamily LYZ39_28230 PF12804 MobA-like NTP transferase domain LYZ39_28230 PF14602 Hexapeptide repeat of succinyl-transferase LYZ39_28230 PF00132 Bacterial transferase hexapeptide (six repeats) LYZ39_28250 PF02630 SCO1/SenC LYZ39_28255 PF01040 UbiA prenyltransferase family LYZ39_28260 PF02628 Cytochrome oxidase assembly protein LYZ39_28280 PF00510 Cytochrome c oxidase subunit III LYZ39_28295 PF00115 Cytochrome C and Quinol oxidase polypeptide I LYZ39_28300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LYZ39_28300 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LYZ39_28310 PF00999 Sodium/hydrogen exchanger family LYZ39_28315 PF00149 Calcineurin-like phosphoesterase LYZ39_28320 PF04542 Sigma-70 region 2 LYZ39_28320 PF04545 Sigma-70, region 4 LYZ39_28320 PF00140 Sigma-70 factor, region 1.2 LYZ39_28330 PF00756 Putative esterase LYZ39_28340 PF00310 Glutamine amidotransferases class-II LYZ39_28340 PF04898 Glutamate synthase central domain LYZ39_28340 PF01645 Conserved region in glutamate synthase LYZ39_28340 PF01493 GXGXG motif LYZ39_28345 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LYZ39_28345 PF07992 Pyridine nucleotide-disulphide oxidoreductase LYZ39_28350 PF03922 OmpW family LYZ39_28355 PF03466 LysR substrate binding domain LYZ39_28355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_28360 PF06779 Uncharacterised MFS-type transporter YbfB LYZ39_28365 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_28370 PF03060 Nitronate monooxygenase LYZ39_28375 PF00005 ABC transporter LYZ39_28380 PF02405 Permease MlaE LYZ39_28385 PF02470 MlaD protein LYZ39_28390 PF04333 MlaA lipoprotein LYZ39_28400 PF00005 ABC transporter LYZ39_28405 PF01061 ABC-2 type transporter LYZ39_28415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LYZ39_28420 PF01634 ATP phosphoribosyltransferase LYZ39_28425 PF00815 Histidinol dehydrogenase LYZ39_28430 PF00155 Aminotransferase class I and II LYZ39_28435 PF00475 Imidazoleglycerol-phosphate dehydratase LYZ39_28440 PF00117 Glutamine amidotransferase class-I LYZ39_28445 PF00977 Histidine biosynthesis protein LYZ39_28450 PF00977 Histidine biosynthesis protein LYZ39_28455 PF01502 Phosphoribosyl-AMP cyclohydrolase LYZ39_28460 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LYZ39_28465 PF01230 HIT domain LYZ39_28470 PF02416 mttA/Hcf106 family LYZ39_28475 PF02416 mttA/Hcf106 family LYZ39_28480 PF00902 Sec-independent protein translocase protein (TatC) LYZ39_28490 PF13180 PDZ domain LYZ39_28495 PF01784 NIF3 (NGG1p interacting factor 3) LYZ39_28500 PF01741 Large-conductance mechanosensitive channel, MscL LYZ39_28505 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LYZ39_28505 PF00355 Rieske [2Fe-2S] domain LYZ39_28510 PF00033 Cytochrome b/b6/petB LYZ39_28510 PF00032 Cytochrome b(C-terminal)/b6/petD LYZ39_28515 PF02167 Cytochrome C1 family LYZ39_28520 PF00043 Glutathione S-transferase, C-terminal domain LYZ39_28520 PF02798 Glutathione S-transferase, N-terminal domain LYZ39_28525 PF04386 Stringent starvation protein B LYZ39_28535 PF02447 GntP family permease LYZ39_28540 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_28545 PF01425 Amidase LYZ39_28550 PF09339 IclR helix-turn-helix domain LYZ39_28550 PF01614 Bacterial transcriptional regulator LYZ39_28555 PF00248 Aldo/keto reductase family LYZ39_28560 PF02515 CoA-transferase family III LYZ39_28570 PF00171 Aldehyde dehydrogenase family LYZ39_28575 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_28590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_28590 PF03466 LysR substrate binding domain LYZ39_28600 PF00266 Aminotransferase class-V LYZ39_28610 PF06445 GyrI-like small molecule binding domain LYZ39_28610 PF12833 Helix-turn-helix domain LYZ39_28620 PF01926 50S ribosome-binding GTPase LYZ39_28620 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LYZ39_28625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LYZ39_28630 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_28635 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_28635 PF12911 N-terminal TM domain of oligopeptide transport permease C LYZ39_28640 PF00005 ABC transporter LYZ39_28640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LYZ39_28650 PF06097 Bacterial protein of unknown function (DUF945) LYZ39_28655 PF06097 Bacterial protein of unknown function (DUF945) LYZ39_28660 PF00271 Helicase conserved C-terminal domain LYZ39_28660 PF00270 DEAD/DEAH box helicase LYZ39_28665 PF01810 LysE type translocator LYZ39_28670 PF16658 Class II release factor RF3, C-terminal domain LYZ39_28670 PF03144 Elongation factor Tu domain 2 LYZ39_28670 PF00009 Elongation factor Tu GTP binding domain LYZ39_28680 PF00210 Ferritin-like domain LYZ39_28690 PF03466 LysR substrate binding domain LYZ39_28690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_28700 PF00309 Sigma-54 factor, Activator interacting domain (AID) LYZ39_28700 PF04963 Sigma-54 factor, core binding domain LYZ39_28700 PF04552 Sigma-54, DNA binding domain LYZ39_28710 PF00682 HMGL-like LYZ39_28710 PF08502 LeuA allosteric (dimerisation) domain LYZ39_28715 PF01425 Amidase LYZ39_28720 PF00356 Bacterial regulatory proteins, lacI family LYZ39_28725 PF00149 Calcineurin-like phosphoesterase LYZ39_28730 PF17912 MalK OB fold domain LYZ39_28730 PF00005 ABC transporter LYZ39_28735 PF13416 Bacterial extracellular solute-binding protein LYZ39_28740 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_28745 PF00528 Binding-protein-dependent transport system inner membrane component LYZ39_28760 PF00750 tRNA synthetases class I (R) LYZ39_28760 PF05746 DALR anticodon binding domain LYZ39_28760 PF03485 Arginyl tRNA synthetase N terminal domain LYZ39_28770 PF01323 DSBA-like thioredoxin domain LYZ39_28770 PF00085 Thioredoxin LYZ39_28785 PF01053 Cys/Met metabolism PLP-dependent enzyme LYZ39_28790 PF00881 Nitroreductase family LYZ39_28795 PF01810 LysE type translocator LYZ39_28800 PF00753 Metallo-beta-lactamase superfamily LYZ39_28805 PF00376 MerR family regulatory protein LYZ39_28805 PF09278 MerR, DNA binding LYZ39_28810 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LYZ39_28815 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_28820 PF01546 Peptidase family M20/M25/M40 LYZ39_28820 PF07687 Peptidase dimerisation domain LYZ39_28825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LYZ39_28825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LYZ39_28825 PF02770 Acyl-CoA dehydrogenase, middle domain LYZ39_28830 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LYZ39_28835 PF02803 Thiolase, C-terminal domain LYZ39_28835 PF00108 Thiolase, N-terminal domain LYZ39_28840 PF01039 Carboxyl transferase domain LYZ39_28845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LYZ39_28845 PF02785 Biotin carboxylase C-terminal domain LYZ39_28845 PF00289 Biotin carboxylase, N-terminal domain LYZ39_28845 PF00364 Biotin-requiring enzyme LYZ39_28850 PF05977 Transmembrane secretion effector LYZ39_28880 PF00199 Catalase LYZ39_28885 PF08281 Sigma-70, region 4 LYZ39_28885 PF04542 Sigma-70 region 2 LYZ39_28895 PF00202 Aminotransferase class-III LYZ39_28900 PF03401 Tripartite tricarboxylate transporter family receptor LYZ39_28915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LYZ39_28915 PF03466 LysR substrate binding domain LYZ39_28920 PF00497 Bacterial extracellular solute-binding proteins, family 3 LYZ39_28925 PF00528 Binding-protein-dependent transport system inner membrane component