locus-tag	class	description
LYZ39_00005	COG0765	amino acid transport
LYZ39_00020	COG2358	TRAP transporter, solute receptor (TAXI family
LYZ39_00030	COG2922	Belongs to the Smg family
LYZ39_00035	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LYZ39_00045	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LYZ39_00045	COG0551	DNA topoisomerase type I activity
LYZ39_00055	COG1116	anion transmembrane transporter activity
LYZ39_00055	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LYZ39_00060	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_00065	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_00070	COG0028	Belongs to the TPP enzyme family
LYZ39_00075	COG1522	sequence-specific DNA binding
LYZ39_00080	COG3781	membrane
LYZ39_00110	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LYZ39_00125	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LYZ39_00135	COG1744	ABC transporter substrate-binding protein PnrA-like
LYZ39_00140	COG3845	ABC transporter
LYZ39_00145	COG4603	Belongs to the binding-protein-dependent transport system permease family
LYZ39_00155	COG0402	S-adenosylhomocysteine deaminase activity
LYZ39_00160	COG0251	oxidation-reduction process
LYZ39_00175	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_00215	COG1177	transmembrane transport
LYZ39_00220	COG1176	ABC-type spermidine putrescine transport system, permease component I
LYZ39_00225	COG3842	ATPase activity
LYZ39_00235	COG1304	FMN binding
LYZ39_00260	COG1126	abc transporter atp-binding protein
LYZ39_00265	COG0765	amino acid transport
LYZ39_00270	COG0765	amino acid transport
LYZ39_00275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_00280	COG0583	DNA-binding transcription factor activity
LYZ39_00285	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LYZ39_00305	COG0592	DNA-directed DNA polymerase activity
LYZ39_00310	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LYZ39_00315	COG0230	Belongs to the bacterial ribosomal protein bL34 family
LYZ39_00320	COG0594	ribonuclease P activity
LYZ39_00325	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LYZ39_00335	COG0753	catalase activity
LYZ39_00345	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
LYZ39_00355	COG2175	clavaminate synthase activity
LYZ39_00360	COG1473	amidohydrolase
LYZ39_00365	COG4608	Belongs to the ABC transporter superfamily
LYZ39_00370	COG0444	Belongs to the ABC transporter superfamily
LYZ39_00375	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_00380	COG0601	transmembrane transport
LYZ39_00390	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LYZ39_00400	COG0038	chloride channel
LYZ39_00410	COG0642	Histidine kinase
LYZ39_00430	COG0436	Aminotransferase
LYZ39_00435	COG3180	Ammonia monooxygenase
LYZ39_00440	COG1278	Cold shock
LYZ39_00445	COG0445	tRNA wobble uridine modification
LYZ39_00450	COG0357	Ribosomal RNA small subunit methyltransferase G
LYZ39_00455	COG1192	Involved in chromosome partitioning
LYZ39_00465	COG1475	DNA binding
LYZ39_00470	COG0252	asparaginase activity
LYZ39_00475	COG0583	DNA-binding transcription factor activity
LYZ39_00500	COG1349	DNA-binding transcription factor activity
LYZ39_00510	COG3842	ATPase activity
LYZ39_00555	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LYZ39_00575	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LYZ39_00580	COG0081	regulation of translation
LYZ39_00585	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LYZ39_00590	COG0222	ribosome binding
LYZ39_00595	COG0085	RNA polymerase activity
LYZ39_00600	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LYZ39_00615	COG5002	protein histidine kinase activity
LYZ39_00630	COG0745	RESPONSE REGULATOR receiver
LYZ39_00635	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LYZ39_00640	COG0049	tRNA binding
LYZ39_00645	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LYZ39_00650	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LYZ39_00655	COG0051	transcription antitermination factor activity, RNA binding
LYZ39_00660	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LYZ39_00670	COG0089	rRNA binding
LYZ39_00675	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LYZ39_00680	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LYZ39_00685	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LYZ39_00690	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LYZ39_00695	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LYZ39_00700	COG0255	Belongs to the universal ribosomal protein uL29 family
LYZ39_00705	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LYZ39_00750	COG2207	Transcriptional regulator
LYZ39_00770	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LYZ39_00775	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LYZ39_00780	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LYZ39_00785	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LYZ39_00790	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LYZ39_00795	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LYZ39_00800	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LYZ39_00805	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LYZ39_00810	COG1841	ribosomal large subunit assembly
LYZ39_00815	COG0200	Binds to the 23S rRNA
LYZ39_00820	COG0201	protein transport
LYZ39_00825	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LYZ39_00830	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LYZ39_00835	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LYZ39_00840	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LYZ39_00845	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LYZ39_00850	COG0202	RNA polymerase activity
LYZ39_00855	COG0203	ribosomal protein L17
LYZ39_00865	COG1324	tolerance protein
LYZ39_00870	COG4232	protein-disulfide reductase activity
LYZ39_00885	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LYZ39_00895	COG1333	cytochrome c biogenesis protein
LYZ39_00900	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LYZ39_00915	COG1965	Belongs to the frataxin family
LYZ39_00925	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LYZ39_00930	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LYZ39_00935	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LYZ39_00950	COG2814	Major facilitator Superfamily
LYZ39_00960	COG0583	DNA-binding transcription factor activity
LYZ39_00965	COG4948	Mandelate Racemase Muconate Lactonizing
LYZ39_00995	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LYZ39_01000	COG2186	Transcriptional regulator
LYZ39_01025	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_01030	COG1956	GAF domain-containing protein
LYZ39_01035	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LYZ39_01050	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LYZ39_01075	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LYZ39_01080	COG3568	Endonuclease Exonuclease Phosphatase
LYZ39_01085	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LYZ39_01090	COG0697	spore germination
LYZ39_01095	COG2814	Major facilitator Superfamily
LYZ39_01105	COG0166	Belongs to the GPI family
LYZ39_01110	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LYZ39_01115	COG0859	PFAM glycosyl transferase family 9
LYZ39_01130	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
LYZ39_01140	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LYZ39_01165	COG1686	Belongs to the peptidase S11 family
LYZ39_01175	COG2921	Belongs to the UPF0250 family
LYZ39_01195	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LYZ39_01200	COG1682	transport, permease protein
LYZ39_01210	COG0438	transferase activity, transferring glycosyl groups
LYZ39_01225	COG1216	Glycosyl transferase, family 2
LYZ39_01300	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LYZ39_01305	COG1216	Glycosyl transferase, family 2
LYZ39_01310	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LYZ39_01330	COG2096	Adenosyltransferase
LYZ39_01340	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LYZ39_01345	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LYZ39_01355	COG0523	cobalamin synthesis protein
LYZ39_01360	COG0735	belongs to the Fur family
LYZ39_01390	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
LYZ39_01395	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LYZ39_01405	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LYZ39_01420	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LYZ39_01425	COG0154	amidase activity
LYZ39_01430	COG0477	Major facilitator Superfamily
LYZ39_01465	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LYZ39_01470	COG0583	DNA-binding transcription factor activity
LYZ39_01475	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_01480	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LYZ39_01485	COG0066	3-isopropylmalate dehydratase activity
LYZ39_01500	COG0438	transferase activity, transferring glycosyl groups
LYZ39_01505	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
LYZ39_01510	COG1950	PFAM Membrane protein of
LYZ39_01515	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LYZ39_01540	COG2308	Evidence 4 Homologs of previously reported genes of
LYZ39_01545	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LYZ39_01565	COG0513	Belongs to the DEAD box helicase family
LYZ39_01570	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LYZ39_01580	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LYZ39_01585	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_01595	COG3189	MarR family transcriptional regulator
LYZ39_01625	COG0640	Transcriptional regulator
LYZ39_01640	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_01680	COG1846	Transcriptional regulator
LYZ39_01685	COG1764	response to oxidative stress
LYZ39_01710	COG0583	DNA-binding transcription factor activity
LYZ39_01735	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LYZ39_01740	COG1280	lysine exporter protein (LysE YggA)
LYZ39_01750	COG0708	Exodeoxyribonuclease III
LYZ39_01755	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LYZ39_01770	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LYZ39_01775	COG0154	amidase activity
LYZ39_01780	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LYZ39_01785	COG1077	Cell shape determining protein MreB Mrl
LYZ39_01790	COG1792	Involved in formation and maintenance of cell shape
LYZ39_01800	COG0768	penicillin binding
LYZ39_01805	COG0772	Belongs to the SEDS family
LYZ39_01810	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LYZ39_01815	COG0471	metal ion transport
LYZ39_01820	COG1309	transcriptional regulator
LYZ39_01830	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LYZ39_01840	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LYZ39_01845	COG2823	Periplasmic or secreted lipoprotein
LYZ39_01850	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LYZ39_01865	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LYZ39_01875	COG1660	Displays ATPase and GTPase activities
LYZ39_01890	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_01895	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
LYZ39_01905	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LYZ39_01910	COG1137	ATPase activity
LYZ39_01925	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LYZ39_01935	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
LYZ39_01945	COG1271	oxidase subunit
LYZ39_01950	COG1294	oxidase, subunit
LYZ39_01960	COG4988	ABC transporter
LYZ39_01965	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LYZ39_01985	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LYZ39_01990	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LYZ39_01995	COG1238	metal cluster binding
LYZ39_02010	COG0071	Belongs to the small heat shock protein (HSP20) family
LYZ39_02015	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_02020	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LYZ39_02025	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_02030	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_02045	COG0758	DNA mediated transformation
LYZ39_02050	COG0242	peptide deformylase activity
LYZ39_02055	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LYZ39_02065	COG0546	phosphoglycolate phosphatase activity
LYZ39_02085	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LYZ39_02090	COG1280	lysine exporter protein (LysE YggA)
LYZ39_02095	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LYZ39_02095	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LYZ39_02105	COG5000	phosphorelay sensor kinase activity
LYZ39_02110	COG2204	response regulator
LYZ39_02115	COG0569	domain protein
LYZ39_02120	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LYZ39_02125	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
LYZ39_02130	COG2226	methyltransferase
LYZ39_02135	COG1040	competence protein
LYZ39_02140	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LYZ39_02150	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LYZ39_02155	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LYZ39_02160	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LYZ39_02165	COG1054	Belongs to the UPF0176 family
LYZ39_02170	COG0588	phosphoglycerate mutase activity
LYZ39_02175	COG4942	peptidase
LYZ39_02180	COG0793	Belongs to the peptidase S41A family
LYZ39_02195	COG2186	Transcriptional regulator
LYZ39_02210	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LYZ39_02225	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LYZ39_02230	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LYZ39_02235	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LYZ39_02240	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LYZ39_02245	COG1414	Transcriptional regulator
LYZ39_02255	COG0142	geranyltranstransferase activity
LYZ39_02320	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LYZ39_02325	COG2084	Dehydrogenase
LYZ39_02355	COG0235	Class ii aldolase
LYZ39_02360	COG2271	Major facilitator Superfamily
LYZ39_02365	COG3622	Belongs to the hyi family
LYZ39_02370	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LYZ39_02375	COG2084	Dehydrogenase
LYZ39_02380	COG3395	kinase activity
LYZ39_02385	COG2186	Transcriptional regulator
LYZ39_02410	COG3622	Belongs to the hyi family
LYZ39_02425	COG5006	permease, DMT superfamily
LYZ39_02435	COG1522	sequence-specific DNA binding
LYZ39_02440	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LYZ39_02440	COG3264	Mechanosensitive ion channel
LYZ39_02455	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LYZ39_02460	COG2890	protein-(glutamine-N5) methyltransferase activity
LYZ39_02465	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LYZ39_02480	COG1464	Belongs to the NlpA lipoprotein family
LYZ39_02500	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_02530	COG0583	DNA-binding transcription factor activity
LYZ39_02545	COG0625	glutathione transferase activity
LYZ39_02550	COG0288	reversible hydration of carbon dioxide
LYZ39_02570	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LYZ39_02580	COG4829	muconolactone delta-isomerase
LYZ39_02585	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LYZ39_02595	COG1414	Transcriptional regulator
LYZ39_02600	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_02605	COG2031	fatty acid transporter
LYZ39_02610	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_02620	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
LYZ39_02625	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LYZ39_02650	COG0129	dihydroxy-acid dehydratase activity
LYZ39_02655	COG0583	DNA-binding transcription factor activity
LYZ39_02660	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LYZ39_02665	COG0508	dehydrogenase complex catalyzes the overall conversion of
LYZ39_02675	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LYZ39_02680	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_02685	COG0410	ABC transporter
LYZ39_02715	COG2186	Transcriptional regulator
LYZ39_02725	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
LYZ39_02745	COG2177	Part of the ABC transporter FtsEX involved in
LYZ39_02750	COG2884	Cell division ATP-binding protein ftsE
LYZ39_02755	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_02760	COG4597	amino acid ABC transporter
LYZ39_02765	COG0765	amino acid transport
LYZ39_02770	COG1126	abc transporter atp-binding protein
LYZ39_02790	COG1129	ABC transporter
LYZ39_02795	COG4177	L-phenylalanine transmembrane transporter activity
LYZ39_02810	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LYZ39_02815	COG2081	HI0933 family
LYZ39_02825	COG1605	Chorismate mutase
LYZ39_02825	COG0077	Prephenate dehydratase
LYZ39_02865	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_02870	COG0583	DNA-binding transcription factor activity
LYZ39_02875	COG0628	permease
LYZ39_02895	COG1176	ABC-type spermidine putrescine transport system, permease component I
LYZ39_02900	COG3842	ATPase activity
LYZ39_02910	COG0277	FAD linked oxidase domain protein
LYZ39_02925	COG0477	Major facilitator Superfamily
LYZ39_02940	COG1695	Transcriptional regulator
LYZ39_02950	COG0583	DNA-binding transcription factor activity
LYZ39_02975	COG0745	RESPONSE REGULATOR receiver
LYZ39_02980	COG2205	protein histidine kinase activity
LYZ39_03020	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_03030	COG3246	L-lysine catabolic process to acetate
LYZ39_03040	COG1172	Belongs to the binding-protein-dependent transport system permease family
LYZ39_03055	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LYZ39_03075	COG1487	ribonuclease activity
LYZ39_03085	COG4638	Rieske (2fe-2S)
LYZ39_03115	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LYZ39_03120	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_03125	COG0210	DNA helicase
LYZ39_03130	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_03150	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
LYZ39_03160	COG0583	DNA-binding transcription factor activity
LYZ39_03165	COG0235	Class ii aldolase
LYZ39_03175	COG0436	Aminotransferase
LYZ39_03180	COG0583	DNA-binding transcription factor activity
LYZ39_03190	COG0477	Major facilitator Superfamily
LYZ39_03290	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LYZ39_03325	COG2233	PERMEase
LYZ39_03330	COG0326	Molecular chaperone. Has ATPase activity
LYZ39_03335	COG2814	Major facilitator Superfamily
LYZ39_03350	COG0402	S-adenosylhomocysteine deaminase activity
LYZ39_03355	COG0747	negative chemotaxis
LYZ39_03360	COG0601	transmembrane transport
LYZ39_03365	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_03370	COG4172	Belongs to the ABC transporter superfamily
LYZ39_03405	COG2271	Major facilitator Superfamily
LYZ39_03410	COG4948	Mandelate Racemase Muconate Lactonizing
LYZ39_03415	COG0800	Aldolase
LYZ39_03420	COG3734	2-keto-3-deoxy-galactonokinase
LYZ39_03425	COG1414	Transcriptional regulator
LYZ39_03430	COG0625	glutathione transferase activity
LYZ39_03445	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LYZ39_03450	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LYZ39_03455	COG1652	LysM domain
LYZ39_03475	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LYZ39_03480	COG0583	DNA-binding transcription factor activity
LYZ39_03485	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_03490	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LYZ39_03520	COG0235	Class ii aldolase
LYZ39_03530	COG0477	Major facilitator Superfamily
LYZ39_03535	COG0625	glutathione transferase activity
LYZ39_03555	COG1132	(ABC) transporter
LYZ39_03565	COG0473	3-isopropylmalate dehydrogenase activity
LYZ39_03575	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_03580	COG1802	Transcriptional regulator
LYZ39_03585	COG0583	DNA-binding transcription factor activity
LYZ39_03590	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_03595	COG0154	amidase activity
LYZ39_03600	COG0456	acetyltransferase
LYZ39_03600	COG1846	Transcriptional regulator
LYZ39_03620	COG3246	L-lysine catabolic process to acetate
LYZ39_03625	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_03635	COG3712	iron ion homeostasis
LYZ39_03645	COG4774	siderophore transport
LYZ39_03650	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LYZ39_03660	COG0583	DNA-binding transcription factor activity
LYZ39_03675	COG3135	benzoate transporter
LYZ39_03680	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LYZ39_03725	COG3279	Response regulator of the LytR AlgR family
LYZ39_03730	COG2972	Histidine kinase
LYZ39_03740	COG2072	flavoprotein involved in K transport
LYZ39_03750	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_03755	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LYZ39_03760	COG0235	Class ii aldolase
LYZ39_03770	COG0583	DNA-binding transcription factor activity
LYZ39_03790	COG0165	Argininosuccinate lyase
LYZ39_03800	COG2814	Major facilitator Superfamily
LYZ39_03805	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_03820	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LYZ39_03865	COG3284	Transcriptional regulator
LYZ39_03875	COG0583	DNA-binding transcription factor activity
LYZ39_03885	COG0583	DNA-binding transcription factor activity
LYZ39_03895	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LYZ39_03900	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LYZ39_03910	COG1131	(ABC) transporter
LYZ39_03930	COG0559	Belongs to the binding-protein-dependent transport system permease family
LYZ39_03940	COG1122	ATPase activity
LYZ39_03995	COG1987	bacterial-type flagellum assembly
LYZ39_04000	COG1684	flagellar biosynthetic protein fliR
LYZ39_04005	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LYZ39_04010	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LYZ39_04015	COG4787	bacterial-type flagellum-dependent cell motility
LYZ39_04030	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
LYZ39_04035	COG1706	bacterial-type flagellum-dependent cell motility
LYZ39_04050	COG1677	Flagellar hook-basal body complex protein FliE
LYZ39_04055	COG1766	The M ring may be actively involved in energy transduction
LYZ39_04065	COG1317	bacterial-type flagellum organization
LYZ39_04070	COG1157	protein secretion by the type III secretion system
LYZ39_04085	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
LYZ39_04110	COG1338	Plays a role in the flagellum-specific transport system
LYZ39_04180	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
LYZ39_04190	COG1764	response to oxidative stress
LYZ39_04195	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LYZ39_04240	COG0625	glutathione transferase activity
LYZ39_04245	COG0583	DNA-binding transcription factor activity
LYZ39_04250	COG0431	NADPH-dependent FMN reductase
LYZ39_04250	COG1053	succinate dehydrogenase
LYZ39_04250	COG3976	FMN-binding domain protein
LYZ39_04270	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_04280	COG1294	oxidase, subunit
LYZ39_04285	COG1271	oxidase subunit
LYZ39_04290	COG0697	spore germination
LYZ39_04305	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_04315	COG0842	Transport permease protein
LYZ39_04320	COG0842	Transport permease protein
LYZ39_04320	COG1129	ABC transporter
LYZ39_04325	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_04340	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LYZ39_04355	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
LYZ39_04370	COG1054	Belongs to the UPF0176 family
LYZ39_04375	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LYZ39_04375	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LYZ39_04385	COG0489	protein tyrosine kinase activity
LYZ39_04400	COG0717	Belongs to the dCTP deaminase family
LYZ39_04430	COG2081	HI0933 family
LYZ39_04445	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LYZ39_04450	COG0509	glycine decarboxylation via glycine cleavage system
LYZ39_04455	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LYZ39_04455	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LYZ39_04470	COG0154	amidase activity
LYZ39_04475	COG4172	Belongs to the ABC transporter superfamily
LYZ39_04480	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_04485	COG0601	transmembrane transport
LYZ39_04505	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LYZ39_04510	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_04535	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
LYZ39_04540	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LYZ39_04545	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LYZ39_04560	COG0438	transferase activity, transferring glycosyl groups
LYZ39_04570	COG0438	transferase activity, transferring glycosyl groups
LYZ39_04575	COG0438	transferase activity, transferring glycosyl groups
LYZ39_04585	COG0166	Belongs to the GPI family
LYZ39_04600	COG0277	FAD linked oxidase domain protein
LYZ39_04605	COG0745	RESPONSE REGULATOR receiver
LYZ39_04620	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LYZ39_04620	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_04630	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LYZ39_04640	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LYZ39_04645	COG2186	Transcriptional regulator
LYZ39_04650	COG1368	sulfuric ester hydrolase activity
LYZ39_04655	COG0204	Acyl-transferase
LYZ39_04690	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
LYZ39_04700	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LYZ39_04705	COG0840	transmembrane signaling receptor activity
LYZ39_04710	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
LYZ39_04730	COG0193	aminoacyl-tRNA hydrolase activity
LYZ39_04740	COG0012	GTP binding
LYZ39_04750	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LYZ39_04755	COG3842	ATPase activity
LYZ39_04765	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LYZ39_04770	COG1175	transmembrane transport
LYZ39_04775	COG0583	DNA-binding transcription factor activity
LYZ39_04785	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_04800	COG1414	Transcriptional regulator
LYZ39_04810	COG0477	Major facilitator Superfamily
LYZ39_04825	COG3135	benzoate transporter
LYZ39_04830	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LYZ39_04835	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LYZ39_04840	COG0742	ribosomal rna small subunit methyltransferase
LYZ39_04855	COG3639	organic phosphonate transmembrane transporter activity
LYZ39_04860	COG3639	organic phosphonate transmembrane transporter activity
LYZ39_04865	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LYZ39_04890	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LYZ39_04895	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LYZ39_04905	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LYZ39_04910	COG1546	Belongs to the CinA family
LYZ39_04915	COG0284	orotidine-5'-phosphate decarboxylase activity
LYZ39_04920	COG1252	NADH dehydrogenase
LYZ39_04925	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LYZ39_04930	COG2186	Transcriptional regulator
LYZ39_04935	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LYZ39_04945	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_04950	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_04955	COG0179	Fumarylacetoacetate (FAA) hydrolase
LYZ39_04960	COG2721	sulfolactate sulfo-lyase activity
LYZ39_04965	COG0246	Mannitol dehydrogenase
LYZ39_04970	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LYZ39_04975	COG0410	ABC transporter
LYZ39_04980	COG1137	ATPase activity
LYZ39_04990	COG0559	Belongs to the binding-protein-dependent transport system permease family
LYZ39_05005	COG1917	Cupin 2, conserved barrel domain protein
LYZ39_05025	COG1846	Transcriptional regulator
LYZ39_05035	COG0459	protein refolding
LYZ39_05040	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
LYZ39_05085	COG3706	GGDEF domain
LYZ39_05095	COG1595	DNA-templated transcription, initiation
LYZ39_05100	COG3712	iron ion homeostasis
LYZ39_05125	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LYZ39_05135	COG0647	UMP catabolic process
LYZ39_05140	COG1737	Transcriptional regulator
LYZ39_05165	COG3246	L-lysine catabolic process to acetate
LYZ39_05180	COG2267	carboxylic ester hydrolase activity
LYZ39_05200	COG0583	DNA-binding transcription factor activity
LYZ39_05210	COG0523	cobalamin synthesis protein
LYZ39_05215	COG1335	isochorismatase
LYZ39_05220	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LYZ39_05225	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LYZ39_05230	COG1802	Transcriptional regulator
LYZ39_05235	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
LYZ39_05245	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_05265	COG1960	acyl-CoA dehydrogenase activity
LYZ39_05270	COG1960	acyl-CoA dehydrogenase activity
LYZ39_05275	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LYZ39_05285	COG2030	dehydratase
LYZ39_05290	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_05320	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_05340	COG2814	Major facilitator Superfamily
LYZ39_05350	COG2721	sulfolactate sulfo-lyase activity
LYZ39_05355	COG0583	DNA-binding transcription factor activity
LYZ39_05370	COG5183	chlorophyll binding
LYZ39_05370	COG2133	pyrroloquinoline quinone binding
LYZ39_05425	COG1222	aaa ATPase
LYZ39_05480	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_05490	COG0028	Belongs to the TPP enzyme family
LYZ39_05505	COG0583	DNA-binding transcription factor activity
LYZ39_05510	COG0028	Belongs to the TPP enzyme family
LYZ39_05530	COG1053	succinate dehydrogenase
LYZ39_05560	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LYZ39_05565	COG0583	DNA-binding transcription factor activity
LYZ39_05570	COG2084	Dehydrogenase
LYZ39_05620	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LYZ39_05630	COG0583	DNA-binding transcription factor activity
LYZ39_05635	COG0473	3-isopropylmalate dehydrogenase activity
LYZ39_05640	COG4585	Histidine kinase
LYZ39_05655	COG0456	acetyltransferase
LYZ39_05665	COG0667	Aldo Keto reductase
LYZ39_05675	COG0546	phosphoglycolate phosphatase activity
LYZ39_05690	COG2818	Glycosylase
LYZ39_05710	COG2197	response regulator
LYZ39_05715	COG2205	protein histidine kinase activity
LYZ39_05715	COG0784	Response regulator, receiver
LYZ39_05735	COG0625	glutathione transferase activity
LYZ39_05765	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LYZ39_05770	COG3346	SURF1 family
LYZ39_05775	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LYZ39_05780	COG1845	cytochrome c oxidase, subunit III
LYZ39_05785	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LYZ39_05790	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LYZ39_05795	COG0477	Major facilitator Superfamily
LYZ39_05845	COG0583	DNA-binding transcription factor activity
LYZ39_05850	COG0861	Integral membrane protein TerC family
LYZ39_05855	COG4106	trans-aconitate 2-methyltransferase activity
LYZ39_05870	COG4774	siderophore transport
LYZ39_05875	COG2207	Transcriptional regulator
LYZ39_05880	COG2807	transmembrane transport
LYZ39_05900	COG0330	HflC and HflK could
LYZ39_05905	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LYZ39_05925	COG4773	Receptor
LYZ39_05935	COG3712	iron ion homeostasis
LYZ39_05945	COG4191	Histidine kinase
LYZ39_05945	COG0784	Response regulator, receiver
LYZ39_05950	COG1595	DNA-templated transcription, initiation
LYZ39_05955	COG3712	iron ion homeostasis
LYZ39_05965	COG2706	6-phosphogluconolactonase activity
LYZ39_05985	COG1309	transcriptional regulator
LYZ39_06005	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LYZ39_06010	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_06020	COG1690	Belongs to the RtcB family
LYZ39_06025	COG4650	regulator
LYZ39_06030	COG1285	pathogenesis
LYZ39_06035	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_06070	COG3145	DNA-N1-methyladenine dioxygenase activity
LYZ39_06080	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LYZ39_06085	COG1396	sequence-specific DNA binding
LYZ39_06105	COG0583	DNA-binding transcription factor activity
LYZ39_06130	COG0583	DNA-binding transcription factor activity
LYZ39_06145	COG0697	spore germination
LYZ39_06175	COG0280	phosphate acetyltransferase
LYZ39_06175	COG0281	malic enzyme
LYZ39_06190	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
LYZ39_06200	COG4772	TonB-dependent receptor
LYZ39_06215	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LYZ39_06220	COG1845	cytochrome c oxidase, subunit III
LYZ39_06225	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LYZ39_06235	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
LYZ39_06255	COG1999	signal sequence binding
LYZ39_06270	COG1126	abc transporter atp-binding protein
LYZ39_06275	COG0765	amino acid transport
LYZ39_06280	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_06285	COG3191	aminopeptidase activity
LYZ39_06290	COG1272	protein, Hemolysin III
LYZ39_06295	COG1522	sequence-specific DNA binding
LYZ39_06305	COG1113	amino acid transport
LYZ39_06325	COG2378	regulation of single-species biofilm formation
LYZ39_06340	COG1595	DNA-templated transcription, initiation
LYZ39_06345	COG3712	iron ion homeostasis
LYZ39_06355	COG3720	iron ion transport
LYZ39_06360	COG4558	Periplasmic binding protein
LYZ39_06365	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LYZ39_06370	COG1120	ATPase activity
LYZ39_06375	COG1666	GTP binding
LYZ39_06405	COG0671	phosphoesterase, PA-phosphatase related
LYZ39_06480	COG0456	acetyltransferase
LYZ39_06495	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_06515	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LYZ39_06520	COG0583	DNA-binding transcription factor activity
LYZ39_06540	COG4774	siderophore transport
LYZ39_06545	COG3712	iron ion homeostasis
LYZ39_06555	COG3468	outer membrane autotransporter barrel domain protein
LYZ39_06570	COG2223	nitrite transmembrane transporter activity
LYZ39_06580	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LYZ39_06585	COG3383	formate dehydrogenase (NAD+) activity
LYZ39_06605	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LYZ39_06615	COG0303	'Molybdopterin
LYZ39_06620	COG0521	Mo-molybdopterin cofactor biosynthetic process
LYZ39_06625	COG0314	molybdopterin synthase activity
LYZ39_06635	COG0315	cyclic pyranopterin monophosphate synthase activity
LYZ39_06645	COG0412	Dienelactone hydrolase
LYZ39_06655	COG0678	peroxiredoxin activity
LYZ39_06665	COG0697	spore germination
LYZ39_06710	COG0667	Aldo Keto reductase
LYZ39_06715	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LYZ39_06720	COG4535	Mg2 and Co2 transporter CorC
LYZ39_06725	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LYZ39_06730	COG1702	phosphate starvation-inducible protein PhoH
LYZ39_06735	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LYZ39_06745	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LYZ39_06765	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LYZ39_06770	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LYZ39_06775	COG1862	Preprotein translocase
LYZ39_06780	COG0343	queuine tRNA-ribosyltransferase activity
LYZ39_06785	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LYZ39_06795	COG2027	D-alanyl-D-alanine carboxypeptidase
LYZ39_06800	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LYZ39_06805	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LYZ39_06805	COG1648	precorrin-2 dehydrogenase activity
LYZ39_06815	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LYZ39_06820	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_06825	COG1116	anion transmembrane transporter activity
LYZ39_06835	COG0243	molybdopterin cofactor binding
LYZ39_06845	COG4575	ribosome binding
LYZ39_06860	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
LYZ39_06865	COG0741	lytic transglycosylase activity
LYZ39_06870	COG0436	Aminotransferase
LYZ39_06880	COG0280	phosphate acetyltransferase
LYZ39_06880	COG0281	malic enzyme
LYZ39_06890	COG2732	(Barnase) inhibitor
LYZ39_06895	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LYZ39_06900	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LYZ39_06905	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LYZ39_06910	COG0126	phosphoglycerate kinase activity
LYZ39_06920	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LYZ39_06925	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LYZ39_06945	COG0625	glutathione transferase activity
LYZ39_06990	COG0306	phosphate transporter
LYZ39_07000	COG0521	Mo-molybdopterin cofactor biosynthetic process
LYZ39_07010	COG0739	heme binding
LYZ39_07020	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LYZ39_07035	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LYZ39_07040	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
LYZ39_07045	COG3639	organic phosphonate transmembrane transporter activity
LYZ39_07065	COG0583	DNA-binding transcription factor activity
LYZ39_07070	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
LYZ39_07075	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
LYZ39_07080	COG3454	Phosphonate metabolism
LYZ39_07085	COG2188	Transcriptional regulator
LYZ39_07090	COG3624	Phosphonate C-P lyase system protein PhnG
LYZ39_07100	COG3626	phosphonate metabolism
LYZ39_07105	COG3627	carbon phosphorus lyase activity
LYZ39_07110	COG4107	phosphonate C-P lyase system protein PhnK
LYZ39_07115	COG4778	phosphonate C-P lyase system protein PhnL
LYZ39_07120	COG3454	Phosphonate metabolism
LYZ39_07140	COG1301	dicarboxylic acid transport
LYZ39_07160	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LYZ39_07200	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LYZ39_07210	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
LYZ39_07215	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LYZ39_07220	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LYZ39_07225	COG0009	L-threonylcarbamoyladenylate synthase
LYZ39_07230	COG1414	Transcriptional regulator
LYZ39_07235	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LYZ39_07250	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_07260	COG0010	Belongs to the arginase family
LYZ39_07270	COG0765	amino acid transport
LYZ39_07275	COG1126	abc transporter atp-binding protein
LYZ39_07280	COG0028	Belongs to the TPP enzyme family
LYZ39_07325	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LYZ39_07355	COG1960	acyl-CoA dehydrogenase activity
LYZ39_07360	COG0028	Belongs to the TPP enzyme family
LYZ39_07365	COG0583	DNA-binding transcription factor activity
LYZ39_07370	COG4974	Belongs to the 'phage' integrase family
LYZ39_07375	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LYZ39_07395	COG1686	Belongs to the peptidase S11 family
LYZ39_07420	COG1074	ATP-dependent DNA helicase activity
LYZ39_07445	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LYZ39_07460	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_07465	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LYZ39_07475	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_07505	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LYZ39_07510	COG0505	Belongs to the CarA family
LYZ39_07515	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LYZ39_07525	COG0406	alpha-ribazole phosphatase activity
LYZ39_07535	COG3842	ATPase activity
LYZ39_07555	COG2233	PERMEase
LYZ39_07560	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LYZ39_07565	COG1534	Rna-binding protein
LYZ39_07570	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LYZ39_07575	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LYZ39_07585	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LYZ39_07620	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LYZ39_07625	COG2814	Major facilitator Superfamily
LYZ39_07695	COG3468	outer membrane autotransporter barrel domain protein
LYZ39_07710	COG0833	amino acid
LYZ39_07730	COG3121	Chaperone
LYZ39_07785	COG5001	Diguanylate cyclase
LYZ39_07790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_07790	COG2205	protein histidine kinase activity
LYZ39_07800	COG2197	response regulator
LYZ39_07805	COG0784	Response regulator, receiver
LYZ39_07805	COG2205	protein histidine kinase activity
LYZ39_07805	COG5002	protein histidine kinase activity
LYZ39_07830	COG1335	isochorismatase
LYZ39_07835	COG0583	DNA-binding transcription factor activity
LYZ39_07845	COG1609	Transcriptional regulator
LYZ39_07855	COG0251	oxidation-reduction process
LYZ39_07860	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_07875	COG0765	amino acid transport
LYZ39_07885	COG2207	Transcriptional regulator
LYZ39_07890	COG0667	Aldo Keto reductase
LYZ39_07915	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
LYZ39_07930	COG0500	methyltransferase
LYZ39_07935	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_07940	COG3321	synthase
LYZ39_07940	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_07940	COG0604	alcohol dehydrogenase
LYZ39_07965	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_07980	COG0371	Dehydrogenase
LYZ39_07985	COG1802	Transcriptional regulator
LYZ39_07990	COG3959	Transketolase, thiamine diphosphate binding domain
LYZ39_07995	COG3958	Transketolase
LYZ39_08000	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LYZ39_08010	COG3938	Belongs to the proline racemase family
LYZ39_08015	COG1177	transmembrane transport
LYZ39_08020	COG1176	ABC-type spermidine putrescine transport system, permease component I
LYZ39_08025	COG3842	ATPase activity
LYZ39_08085	COG1511	domain protein
LYZ39_08085	COG3264	Mechanosensitive ion channel
LYZ39_08090	COG0583	DNA-binding transcription factor activity
LYZ39_08095	COG0427	acetyl-CoA hydrolase
LYZ39_08100	COG0583	DNA-binding transcription factor activity
LYZ39_08135	COG0583	DNA-binding transcription factor activity
LYZ39_08150	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_08160	COG0477	Major facilitator Superfamily
LYZ39_08170	COG0154	amidase activity
LYZ39_08185	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LYZ39_08200	COG0495	leucyl-tRNA aminoacylation
LYZ39_08205	COG2814	Major facilitator Superfamily
LYZ39_08210	COG1846	Transcriptional regulator
LYZ39_08220	COG1686	Belongs to the peptidase S11 family
LYZ39_08250	COG0583	DNA-binding transcription factor activity
LYZ39_08260	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LYZ39_08265	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LYZ39_08270	COG2814	Major facilitator Superfamily
LYZ39_08275	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LYZ39_08285	COG4176	ABC-type proline glycine betaine transport system permease component
LYZ39_08315	COG0583	DNA-binding transcription factor activity
LYZ39_08330	COG1408	metallophosphoesterase
LYZ39_08345	COG1595	DNA-templated transcription, initiation
LYZ39_08350	COG3712	iron ion homeostasis
LYZ39_08355	COG4774	siderophore transport
LYZ39_08385	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
LYZ39_08385	COG1793	dna ligase
LYZ39_08390	COG1793	dna ligase
LYZ39_08395	COG1201	RNA secondary structure unwinding
LYZ39_08415	COG0469	pyruvate kinase activity
LYZ39_08420	COG2271	Major facilitator Superfamily
LYZ39_08425	COG0148	phosphopyruvate hydratase activity
LYZ39_08470	COG1024	Enoyl-CoA hydratase
LYZ39_08490	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_08500	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
LYZ39_08505	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_08550	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_08555	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_08570	COG1802	Transcriptional regulator
LYZ39_08600	COG1024	Enoyl-CoA hydratase
LYZ39_08600	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_08620	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
LYZ39_08625	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_08630	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_08655	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_08670	COG1396	sequence-specific DNA binding
LYZ39_08740	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LYZ39_08760	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
LYZ39_08765	COG1116	anion transmembrane transporter activity
LYZ39_08770	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_08775	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LYZ39_08775	COG1116	anion transmembrane transporter activity
LYZ39_08780	COG2197	response regulator
LYZ39_08785	COG3851	Histidine kinase
LYZ39_08805	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LYZ39_08810	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_08815	COG0179	Fumarylacetoacetate (FAA) hydrolase
LYZ39_08825	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
LYZ39_08835	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_08840	COG1126	abc transporter atp-binding protein
LYZ39_08855	COG0765	amino acid transport
LYZ39_08860	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_08910	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LYZ39_08915	COG0583	DNA-binding transcription factor activity
LYZ39_08930	COG0747	negative chemotaxis
LYZ39_08935	COG0601	transmembrane transport
LYZ39_08940	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_08945	COG4172	Belongs to the ABC transporter superfamily
LYZ39_08965	COG2885	chlorophyll binding
LYZ39_08970	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LYZ39_08985	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_08995	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LYZ39_09015	COG1802	Transcriptional regulator
LYZ39_09035	COG2084	Dehydrogenase
LYZ39_09045	COG0183	Belongs to the thiolase family
LYZ39_09055	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LYZ39_09070	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_09070	COG1024	Enoyl-CoA hydratase
LYZ39_09095	COG1024	Enoyl-CoA hydratase
LYZ39_09105	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LYZ39_09150	COG0628	permease
LYZ39_09170	COG0471	metal ion transport
LYZ39_09170	COG0490	domain, Protein
LYZ39_09180	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LYZ39_09190	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
LYZ39_09210	COG2808	Putative FMN-binding domain
LYZ39_09245	COG2321	neutral zinc metallopeptidase
LYZ39_09250	COG0009	L-threonylcarbamoyladenylate synthase
LYZ39_09255	COG1994	Peptidase M50
LYZ39_09260	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LYZ39_09265	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LYZ39_09275	COG2850	peptidyl-arginine hydroxylation
LYZ39_09280	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LYZ39_09290	COG0583	DNA-binding transcription factor activity
LYZ39_09310	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_09315	COG0583	DNA-binding transcription factor activity
LYZ39_09325	COG3360	Dodecin
LYZ39_09335	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_09370	COG1802	Transcriptional regulator
LYZ39_09390	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_09395	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LYZ39_09450	COG0668	transmembrane transport
LYZ39_09470	COG0483	inositol monophosphate 1-phosphatase activity
LYZ39_09485	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LYZ39_09500	COG4263	nitrous-oxide reductase activity
LYZ39_09515	COG1253	flavin adenine dinucleotide binding
LYZ39_09520	COG1968	undecaprenyl-diphosphatase activity
LYZ39_09525	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LYZ39_09540	COG0215	cysteine-tRNA ligase activity
LYZ39_09550	COG0825	malonyl-CoA metabolic process
LYZ39_09555	COG0037	tRNA processing
LYZ39_09560	COG0527	aspartate kinase activity
LYZ39_09580	COG2188	Transcriptional regulator
LYZ39_09585	COG0154	amidase activity
LYZ39_09615	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
LYZ39_09665	COG0583	DNA-binding transcription factor activity
LYZ39_09680	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LYZ39_09690	COG1414	Transcriptional regulator
LYZ39_09715	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LYZ39_09720	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_09730	COG0179	Fumarylacetoacetate (FAA) hydrolase
LYZ39_09735	COG2186	Transcriptional regulator
LYZ39_09750	COG1764	response to oxidative stress
LYZ39_09755	COG0583	DNA-binding transcription factor activity
LYZ39_09765	COG1595	DNA-templated transcription, initiation
LYZ39_09790	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LYZ39_09795	COG3395	kinase activity
LYZ39_09805	COG4774	siderophore transport
LYZ39_09810	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_09825	COG0183	Belongs to the thiolase family
LYZ39_09830	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_09830	COG1024	Enoyl-CoA hydratase
LYZ39_09840	COG1024	Enoyl-CoA hydratase
LYZ39_09840	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_09865	COG2197	response regulator
LYZ39_09870	COG2197	response regulator
LYZ39_09875	COG0297	glycogen (starch) synthase activity
LYZ39_09880	COG0110	maltose O-acetyltransferase activity
LYZ39_09910	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LYZ39_09930	COG1051	belongs to the nudix hydrolase family
LYZ39_09945	COG0489	protein tyrosine kinase activity
LYZ39_09945	COG3206	protein involved in exopolysaccharide biosynthesis
LYZ39_09955	COG0166	Belongs to the GPI family
LYZ39_09960	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LYZ39_09965	COG1045	serine acetyltransferase
LYZ39_09970	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LYZ39_09975	COG0483	inositol monophosphate 1-phosphatase activity
LYZ39_09985	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LYZ39_10005	COG0598	Magnesium transport protein CorA
LYZ39_10020	COG0601	transmembrane transport
LYZ39_10025	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_10030	COG4172	Belongs to the ABC transporter superfamily
LYZ39_10040	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LYZ39_10055	COG3384	dioxygenase
LYZ39_10060	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LYZ39_10070	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_10125	COG0517	IMP dehydrogenase activity
LYZ39_10130	COG0583	DNA-binding transcription factor activity
LYZ39_10145	COG1960	acyl-CoA dehydrogenase activity
LYZ39_10150	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_10155	COG1024	Enoyl-CoA hydratase
LYZ39_10160	COG0183	Belongs to the thiolase family
LYZ39_10170	COG1024	Enoyl-CoA hydratase
LYZ39_10185	COG1960	acyl-CoA dehydrogenase activity
LYZ39_10200	COG1802	Transcriptional regulator
LYZ39_10210	COG1024	Enoyl-CoA hydratase
LYZ39_10215	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_10225	COG0667	Aldo Keto reductase
LYZ39_10235	COG4120	Belongs to the binding-protein-dependent transport system permease family
LYZ39_10240	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LYZ39_10250	COG1126	abc transporter atp-binding protein
LYZ39_10255	COG0765	amino acid transport
LYZ39_10265	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_10270	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
LYZ39_10270	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_10275	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LYZ39_10300	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
LYZ39_10305	COG0725	ABC transporter, periplasmic molybdate-binding protein
LYZ39_10310	COG4149	molybdate abc transporter
LYZ39_10315	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LYZ39_10340	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_10345	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LYZ39_10355	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LYZ39_10360	COG0736	holo-[acyl-carrier-protein] synthase activity
LYZ39_10375	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LYZ39_10385	COG1858	cytochrome C peroxidase
LYZ39_10390	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LYZ39_10390	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LYZ39_10395	COG2224	Isocitrate lyase
LYZ39_10400	COG1064	alcohol dehydrogenase
LYZ39_10405	COG0583	DNA-binding transcription factor activity
LYZ39_10410	COG0583	DNA-binding transcription factor activity
LYZ39_10415	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_10420	COG2301	Belongs to the HpcH HpaI aldolase family
LYZ39_10430	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LYZ39_10430	COG4106	trans-aconitate 2-methyltransferase activity
LYZ39_10440	COG0156	8-amino-7-oxononanoate synthase activity
LYZ39_10460	COG3278	Belongs to the heme-copper respiratory oxidase family
LYZ39_10480	COG0348	domain, Protein
LYZ39_10495	COG2824	Alkylphosphonate utilization operon protein PhnA
LYZ39_10505	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_10515	COG4948	Mandelate Racemase Muconate Lactonizing
LYZ39_10525	COG1131	(ABC) transporter
LYZ39_10530	COG0842	Transport permease protein
LYZ39_10555	COG1272	protein, Hemolysin III
LYZ39_10585	COG2169	Transcriptional regulator
LYZ39_10595	COG0840	transmembrane signaling receptor activity
LYZ39_10650	COG0747	negative chemotaxis
LYZ39_10655	COG0601	transmembrane transport
LYZ39_10660	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_10665	COG4608	Belongs to the ABC transporter superfamily
LYZ39_10670	COG0444	Belongs to the ABC transporter superfamily
LYZ39_10685	COG1464	Belongs to the NlpA lipoprotein family
LYZ39_10695	COG2011	ABC-type metal ion transport system permease component
LYZ39_10755	COG0023	Translation Initiation Factor
LYZ39_10785	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_10805	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
LYZ39_10810	COG3153	acetyltransferase
LYZ39_10820	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_10825	COG1473	amidohydrolase
LYZ39_10835	COG1309	transcriptional regulator
LYZ39_10840	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_10845	COG2272	Belongs to the type-B carboxylesterase lipase family
LYZ39_10855	COG0583	DNA-binding transcription factor activity
LYZ39_10880	COG2951	lytic endotransglycosylase activity
LYZ39_10890	COG0519	Catalyzes the synthesis of GMP from XMP
LYZ39_10910	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_10935	COG0488	(ABC) transporter
LYZ39_10940	COG0739	heme binding
LYZ39_10940	COG0741	lytic transglycosylase activity
LYZ39_10940	COG1196	nuclear chromosome segregation
LYZ39_10955	COG1522	sequence-specific DNA binding
LYZ39_11010	COG3530	Putative quorum-sensing-regulated virulence factor
LYZ39_11020	COG0443	Heat shock 70 kDa protein
LYZ39_11025	COG0494	nUDIX hydrolase
LYZ39_11060	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LYZ39_11070	COG0542	response to heat
LYZ39_11085	COG5441	Belongs to the UPF0261 family
LYZ39_11090	COG5564	TIM-barrel signal transduction protein
LYZ39_11100	COG0583	DNA-binding transcription factor activity
LYZ39_11105	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
LYZ39_11120	COG1477	protein flavinylation
LYZ39_11145	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LYZ39_11150	COG2188	Transcriptional regulator
LYZ39_11160	COG0583	DNA-binding transcription factor activity
LYZ39_11185	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LYZ39_11195	COG1562	ergosterol biosynthetic process
LYZ39_11200	COG1562	ergosterol biosynthetic process
LYZ39_11205	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LYZ39_11210	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_11220	COG3971	2-oxopent-4-enoate hydratase activity
LYZ39_11235	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_11240	COG3384	dioxygenase
LYZ39_11270	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LYZ39_11275	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_11280	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_11290	COG2186	Transcriptional regulator
LYZ39_11305	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_11320	COG0583	DNA-binding transcription factor activity
LYZ39_11325	COG0268	Binds directly to 16S ribosomal RNA
LYZ39_11335	COG0728	peptidoglycan biosynthetic process
LYZ39_11345	COG0563	adenylate kinase activity
LYZ39_11350	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LYZ39_11355	COG2835	tetraacyldisaccharide 4'-kinase activity
LYZ39_11360	COG1663	tetraacyldisaccharide 4'-kinase activity
LYZ39_11370	COG0811	peptide transport
LYZ39_11385	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LYZ39_11395	COG0038	chloride channel
LYZ39_11400	COG0183	Belongs to the thiolase family
LYZ39_11410	COG1278	Cold shock
LYZ39_11415	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LYZ39_11420	COG2373	Large extracellular alpha-helical protein
LYZ39_11425	COG4953	penicillin-binding protein 1C
LYZ39_11430	COG0542	response to heat
LYZ39_11435	COG2995	paraquat-inducible protein a
LYZ39_11440	COG3008	intermembrane lipid transfer
LYZ39_11450	COG0506	proline dehydrogenase activity
LYZ39_11450	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LYZ39_11450	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LYZ39_11460	COG0559	Belongs to the binding-protein-dependent transport system permease family
LYZ39_11480	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_11485	COG1024	Enoyl-CoA hydratase
LYZ39_11495	COG1802	Transcriptional regulator
LYZ39_11500	COG2271	Major facilitator Superfamily
LYZ39_11515	COG1914	H( )-stimulated, divalent metal cation uptake system
LYZ39_11520	COG1764	response to oxidative stress
LYZ39_11530	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_11535	COG0765	amino acid transport
LYZ39_11540	COG0765	amino acid transport
LYZ39_11545	COG1126	abc transporter atp-binding protein
LYZ39_11550	COG1902	pentaerythritol trinitrate reductase activity
LYZ39_11600	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LYZ39_11605	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LYZ39_11610	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LYZ39_11615	COG0196	riboflavin kinase activity
LYZ39_11620	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LYZ39_11625	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LYZ39_11625	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LYZ39_11640	COG0210	DNA helicase
LYZ39_11655	COG4771	TonB-dependent receptor
LYZ39_11670	COG0488	(ABC) transporter
LYZ39_11675	COG2890	protein-(glutamine-N5) methyltransferase activity
LYZ39_11685	COG2171	N-acyltransferase activity
LYZ39_11690	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LYZ39_11700	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
LYZ39_11700	COG2755	lipolytic protein G-D-S-L family
LYZ39_11715	COG2271	Major facilitator Superfamily
LYZ39_11720	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LYZ39_11725	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LYZ39_11730	COG0277	FAD linked oxidase domain protein
LYZ39_11755	COG3038	cytochrome b561
LYZ39_11760	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LYZ39_11775	COG3008	intermembrane lipid transfer
LYZ39_11795	COG1309	transcriptional regulator
LYZ39_11810	COG0583	DNA-binding transcription factor activity
LYZ39_11820	COG0251	oxidation-reduction process
LYZ39_11850	COG1278	Cold shock
LYZ39_11860	COG1278	Cold shock
LYZ39_11870	COG0501	Belongs to the peptidase M48B family
LYZ39_11875	COG0544	peptidyl-prolyl cis-trans isomerase activity
LYZ39_11880	COG0740	serine-type endopeptidase activity
LYZ39_11885	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LYZ39_11890	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LYZ39_11895	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LYZ39_11905	COG0556	nucleotide-excision repair
LYZ39_11910	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LYZ39_11920	COG1104	cysteine desulfurase activity
LYZ39_11925	COG0822	iron-sulfur transferase activity
LYZ39_11935	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
LYZ39_11940	COG0443	Heat shock 70 kDa protein
LYZ39_11955	COG1803	Methylglyoxal synthase
LYZ39_11960	COG1024	Enoyl-CoA hydratase
LYZ39_11990	COG1022	Amp-dependent synthetase and ligase
LYZ39_11995	COG0183	Belongs to the thiolase family
LYZ39_12000	COG1309	transcriptional regulator
LYZ39_12010	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LYZ39_12015	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_12025	COG2271	Major facilitator Superfamily
LYZ39_12045	COG1136	(ABC) transporter
LYZ39_12055	COG4771	TonB-dependent receptor
LYZ39_12065	COG0745	RESPONSE REGULATOR receiver
LYZ39_12070	COG4771	TonB-dependent receptor
LYZ39_12075	COG4607	ABC-type enterochelin transport system periplasmic component
LYZ39_12080	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LYZ39_12085	COG4605	iron ion homeostasis
LYZ39_12090	COG4604	ABC transporter, ATP-binding protein
LYZ39_12095	COG0737	Belongs to the 5'-nucleotidase family
LYZ39_12115	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LYZ39_12150	COG0583	DNA-binding transcription factor activity
LYZ39_12160	COG0473	3-isopropylmalate dehydrogenase activity
LYZ39_12175	COG1850	ribulose-bisphosphate carboxylase activity
LYZ39_12185	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_12190	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LYZ39_12225	COG2197	response regulator
LYZ39_12230	COG3851	Histidine kinase
LYZ39_12235	COG1846	Transcriptional regulator
LYZ39_12245	COG1566	PFAM secretion protein HlyD family protein
LYZ39_12255	COG3707	response regulator
LYZ39_12270	COG2116	formate transmembrane transporter activity
LYZ39_12275	COG2146	nitrite reductase [NAD(P)H] activity
LYZ39_12280	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LYZ39_12280	COG2146	nitrite reductase [NAD(P)H] activity
LYZ39_12285	COG0583	DNA-binding transcription factor activity
LYZ39_12290	COG4804	nuclease activity
LYZ39_12300	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LYZ39_12310	COG0613	PHP domain protein
LYZ39_12320	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LYZ39_12325	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LYZ39_12325	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_12335	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LYZ39_12335	COG0047	phosphoribosylformylglycinamidine synthase activity
LYZ39_12340	COG0583	DNA-binding transcription factor activity
LYZ39_12360	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_12365	COG2084	Dehydrogenase
LYZ39_12375	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_12400	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_12420	COG2353	YceI-like domain
LYZ39_12445	COG1309	transcriptional regulator
LYZ39_12470	COG2207	Transcriptional regulator
LYZ39_12470	COG3708	Transcriptional regulator
LYZ39_12475	COG1335	isochorismatase
LYZ39_12525	COG0583	DNA-binding transcription factor activity
LYZ39_12530	COG2130	NADP-dependent
LYZ39_12595	COG0747	negative chemotaxis
LYZ39_12600	COG4608	Belongs to the ABC transporter superfamily
LYZ39_12610	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_12615	COG0601	transmembrane transport
LYZ39_12620	COG2072	flavoprotein involved in K transport
LYZ39_12650	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LYZ39_12660	COG0583	DNA-binding transcription factor activity
LYZ39_12725	COG0519	Catalyzes the synthesis of GMP from XMP
LYZ39_12725	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LYZ39_12735	COG0640	Transcriptional regulator
LYZ39_12745	COG3550	peptidyl-serine autophosphorylation
LYZ39_12750	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
LYZ39_12755	COG1522	sequence-specific DNA binding
LYZ39_12765	COG0436	Aminotransferase
LYZ39_12800	COG0667	Aldo Keto reductase
LYZ39_12805	COG1172	Belongs to the binding-protein-dependent transport system permease family
LYZ39_12825	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LYZ39_12830	COG2188	Transcriptional regulator
LYZ39_12860	COG1199	ATP-dependent helicase activity
LYZ39_12875	COG0583	DNA-binding transcription factor activity
LYZ39_12880	COG0154	amidase activity
LYZ39_12885	COG0840	transmembrane signaling receptor activity
LYZ39_12910	COG2201	protein-glutamate methylesterase activity
LYZ39_12915	COG2203	Gaf domain
LYZ39_12915	COG3706	GGDEF domain
LYZ39_12915	COG5001	Diguanylate cyclase
LYZ39_12915	COG4251	negative regulation of phosphorylation
LYZ39_12920	COG1522	sequence-specific DNA binding
LYZ39_12965	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_12970	COG1960	acyl-CoA dehydrogenase activity
LYZ39_12975	COG1960	acyl-CoA dehydrogenase activity
LYZ39_12980	COG0183	Belongs to the thiolase family
LYZ39_12990	COG0583	DNA-binding transcription factor activity
LYZ39_12995	COG0628	permease
LYZ39_13005	COG2733	membrane
LYZ39_13015	COG0625	glutathione transferase activity
LYZ39_13045	COG3591	Belongs to the peptidase S1B family
LYZ39_13045	COG1864	DNA RNA non-specific endonuclease
LYZ39_13075	COG2885	chlorophyll binding
LYZ39_13130	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LYZ39_13140	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_13155	COG1846	Transcriptional regulator
LYZ39_13165	COG3541	Predicted nucleotidyltransferase
LYZ39_13170	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_13175	COG0583	DNA-binding transcription factor activity
LYZ39_13200	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LYZ39_13205	COG0697	spore germination
LYZ39_13215	COG4941	Belongs to the sigma-70 factor family
LYZ39_13225	COG3795	YCII-related domain
LYZ39_13235	COG3795	YCII-related domain
LYZ39_13250	COG3047	cAMP biosynthetic process
LYZ39_13250	COG2885	chlorophyll binding
LYZ39_13270	COG2207	Transcriptional regulator
LYZ39_13280	COG1683	Conserved Protein
LYZ39_13290	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_13300	COG1309	transcriptional regulator
LYZ39_13310	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_13315	COG0668	transmembrane transport
LYZ39_13325	COG4608	Belongs to the ABC transporter superfamily
LYZ39_13330	COG0444	Belongs to the ABC transporter superfamily
LYZ39_13335	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_13345	COG0747	negative chemotaxis
LYZ39_13350	COG1802	Transcriptional regulator
LYZ39_13355	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LYZ39_13380	COG0667	Aldo Keto reductase
LYZ39_13390	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_13395	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LYZ39_13415	COG1414	Transcriptional regulator
LYZ39_13420	COG3311	Transcriptional regulator
LYZ39_13425	COG1569	PIN domain
LYZ39_13440	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LYZ39_13445	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_13450	COG1473	amidohydrolase
LYZ39_13465	COG2764	glyoxalase bleomycin resistance protein dioxygenase
LYZ39_13515	COG2271	Major facilitator Superfamily
LYZ39_13520	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LYZ39_13540	COG0587	DNA-directed DNA polymerase activity
LYZ39_13555	COG0833	amino acid
LYZ39_13560	COG0400	carboxylic ester hydrolase activity
LYZ39_13570	COG1566	PFAM secretion protein HlyD family protein
LYZ39_13590	COG0720	synthase
LYZ39_13595	COG0602	queuosine metabolic process
LYZ39_13615	COG1902	pentaerythritol trinitrate reductase activity
LYZ39_13645	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LYZ39_13660	COG0842	Transport permease protein
LYZ39_13665	COG1131	(ABC) transporter
LYZ39_13680	COG2130	NADP-dependent
LYZ39_13705	COG3842	ATPase activity
LYZ39_13710	COG3842	ATPase activity
LYZ39_13720	COG0395	ABC-type sugar transport system, permease component
LYZ39_13745	COG2199	diguanylate cyclase activity
LYZ39_13745	COG2203	Gaf domain
LYZ39_13750	COG3634	alkyl hydroperoxide reductase activity
LYZ39_13755	COG3387	PFAM Glycoside hydrolase 15-related
LYZ39_13760	COG1960	acyl-CoA dehydrogenase activity
LYZ39_13805	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_13810	COG0420	3'-5' exonuclease activity
LYZ39_13835	COG2111	Na H antiporter
LYZ39_13835	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LYZ39_13840	COG1006	Multisubunit Na H antiporter MnhC subunit
LYZ39_13845	COG0651	ATP synthesis coupled electron transport
LYZ39_13850	COG1863	multisubunit Na H antiporter MnhE subunit
LYZ39_13855	COG2212	antiporter activity
LYZ39_13875	COG0590	tRNA wobble adenosine to inosine editing
LYZ39_13880	COG1619	proteins homologs of microcin C7 resistance protein MccF
LYZ39_13885	COG0488	(ABC) transporter
LYZ39_13920	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LYZ39_13925	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LYZ39_13935	COG2252	PERMEase
LYZ39_13940	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LYZ39_13945	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LYZ39_13955	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LYZ39_13985	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LYZ39_13990	COG0789	Transcriptional regulator
LYZ39_14005	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LYZ39_14005	COG0678	peroxiredoxin activity
LYZ39_14015	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LYZ39_14020	COG0584	glycerophosphoryl diester phosphodiesterase
LYZ39_14030	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LYZ39_14040	COG4181	ATPase activity
LYZ39_14050	COG1178	ABC-type Fe3 transport system permease component
LYZ39_14055	COG3842	ATPase activity
LYZ39_14060	COG0583	DNA-binding transcription factor activity
LYZ39_14065	COG0560	Phosphoserine phosphatase
LYZ39_14075	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LYZ39_14085	COG0583	DNA-binding transcription factor activity
LYZ39_14100	COG0583	DNA-binding transcription factor activity
LYZ39_14105	COG4336	lyase activity
LYZ39_14140	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LYZ39_14180	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_14185	COG0765	amino acid transport
LYZ39_14190	COG1126	abc transporter atp-binding protein
LYZ39_14195	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LYZ39_14200	COG1758	RNA polymerase activity
LYZ39_14205	COG0194	GDP metabolic process
LYZ39_14210	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_14215	COG0791	NLP P60 protein
LYZ39_14220	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LYZ39_14225	COG0833	amino acid
LYZ39_14230	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_14235	COG0583	DNA-binding transcription factor activity
LYZ39_14240	COG1942	4-Oxalocrotonate Tautomerase
LYZ39_14245	COG1561	YicC-like family, N-terminal region
LYZ39_14250	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LYZ39_14255	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_14280	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_14285	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LYZ39_14300	COG1960	acyl-CoA dehydrogenase activity
LYZ39_14310	COG4943	cyclic-guanylate-specific phosphodiesterase activity
LYZ39_14315	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LYZ39_14320	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LYZ39_14325	COG0174	glutamine synthetase
LYZ39_14335	COG2204	response regulator
LYZ39_14340	COG0583	DNA-binding transcription factor activity
LYZ39_14345	COG1741	Belongs to the pirin family
LYZ39_14350	COG1741	Belongs to the pirin family
LYZ39_14365	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_14370	COG3842	ATPase activity
LYZ39_14380	COG1840	ABC-type Fe3 transport system, periplasmic component
LYZ39_14425	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LYZ39_14430	COG0583	DNA-binding transcription factor activity
LYZ39_14435	COG0783	Belongs to the Dps family
LYZ39_14450	COG1215	transferase activity, transferring glycosyl groups
LYZ39_14470	COG0438	transferase activity, transferring glycosyl groups
LYZ39_14480	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LYZ39_14510	COG0156	8-amino-7-oxononanoate synthase activity
LYZ39_14515	COG3321	synthase
LYZ39_14515	COG0604	alcohol dehydrogenase
LYZ39_14515	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_14530	COG3842	ATPase activity
LYZ39_14535	COG0395	ABC-type sugar transport system, permease component
LYZ39_14540	COG1175	transmembrane transport
LYZ39_14545	COG1653	transport
LYZ39_14555	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LYZ39_14565	COG0559	Belongs to the binding-protein-dependent transport system permease family
LYZ39_14585	COG1794	racemase activity, acting on amino acids and derivatives
LYZ39_14590	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
LYZ39_14600	COG0583	DNA-binding transcription factor activity
LYZ39_14605	COG0625	glutathione transferase activity
LYZ39_14610	COG2133	pyrroloquinoline quinone binding
LYZ39_14620	COG0697	spore germination
LYZ39_14625	COG2363	Small membrane protein
LYZ39_14655	COG0010	Belongs to the arginase family
LYZ39_14660	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LYZ39_14665	COG1464	Belongs to the NlpA lipoprotein family
LYZ39_14680	COG1408	metallophosphoesterase
LYZ39_14690	COG0688	phosphatidylethanolamine metabolic process
LYZ39_14695	COG0488	(ABC) transporter
LYZ39_14720	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_14725	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LYZ39_14730	COG5001	Diguanylate cyclase
LYZ39_14730	COG3300	MHYT domain
LYZ39_14750	COG2814	Major facilitator Superfamily
LYZ39_14770	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LYZ39_14775	COG2204	response regulator
LYZ39_14780	COG2204	response regulator
LYZ39_14805	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_14845	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LYZ39_14850	COG0589	response to stress
LYZ39_14855	COG1289	transmembrane transporter activity
LYZ39_14860	COG2199	diguanylate cyclase activity
LYZ39_14860	COG2200	EAL domain
LYZ39_14875	COG1640	4-alpha-glucanotransferase
LYZ39_14880	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LYZ39_14890	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LYZ39_14895	COG0366	Alpha amylase catalytic
LYZ39_14900	COG0366	Alpha amylase catalytic
LYZ39_14905	COG0297	glycogen (starch) synthase activity
LYZ39_14910	COG0028	Belongs to the TPP enzyme family
LYZ39_14955	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LYZ39_14960	COG3568	Endonuclease Exonuclease Phosphatase
LYZ39_14975	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_14980	COG4172	Belongs to the ABC transporter superfamily
LYZ39_15030	COG1253	flavin adenine dinucleotide binding
LYZ39_15045	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LYZ39_15050	COG0714	Associated with various cellular activities
LYZ39_15070	COG2304	oxidoreductase activity
LYZ39_15085	COG3119	arylsulfatase activity
LYZ39_15130	COG1024	Enoyl-CoA hydratase
LYZ39_15135	COG2814	Major facilitator Superfamily
LYZ39_15155	COG2807	transmembrane transport
LYZ39_15160	COG1846	Transcriptional regulator
LYZ39_15175	COG4774	siderophore transport
LYZ39_15180	COG3712	iron ion homeostasis
LYZ39_15195	COG2199	diguanylate cyclase activity
LYZ39_15200	COG3706	GGDEF domain
LYZ39_15220	COG2197	response regulator
LYZ39_15230	COG4943	cyclic-guanylate-specific phosphodiesterase activity
LYZ39_15235	COG0784	Response regulator, receiver
LYZ39_15235	COG2205	protein histidine kinase activity
LYZ39_15250	COG0628	permease
LYZ39_15275	COG1959	2 iron, 2 sulfur cluster binding
LYZ39_15285	COG0531	amino acid
LYZ39_15305	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
LYZ39_15325	COG4772	TonB-dependent receptor
LYZ39_15345	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LYZ39_15350	COG3119	arylsulfatase activity
LYZ39_15355	COG0431	NADPH-dependent FMN reductase
LYZ39_15365	COG0798	PFAM Bile acid sodium symporter
LYZ39_15390	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_15410	COG1024	Enoyl-CoA hydratase
LYZ39_15415	COG2079	MmgE PrpD family protein
LYZ39_15430	COG1414	Transcriptional regulator
LYZ39_15465	COG1073	alpha beta
LYZ39_15485	COG1696	Membrane protein involved in D-alanine export
LYZ39_15520	COG1215	transferase activity, transferring glycosyl groups
LYZ39_15530	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LYZ39_15550	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LYZ39_15565	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LYZ39_15580	COG2186	Transcriptional regulator
LYZ39_15585	COG0747	negative chemotaxis
LYZ39_15595	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_15600	COG0444	Belongs to the ABC transporter superfamily
LYZ39_15605	COG4608	Belongs to the ABC transporter superfamily
LYZ39_15615	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LYZ39_15625	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_15625	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LYZ39_15635	COG0028	Belongs to the TPP enzyme family
LYZ39_15645	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_15665	COG0583	DNA-binding transcription factor activity
LYZ39_15680	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_15685	COG3386	PFAM SMP-30 Gluconolaconase
LYZ39_15690	COG2721	sulfolactate sulfo-lyase activity
LYZ39_15695	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LYZ39_15715	COG3321	synthase
LYZ39_15715	COG0604	alcohol dehydrogenase
LYZ39_15715	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_15730	COG0601	transmembrane transport
LYZ39_15735	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_15740	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_15755	COG1116	anion transmembrane transporter activity
LYZ39_15760	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_15780	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LYZ39_15795	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LYZ39_15810	COG0390	transport system, permease component
LYZ39_15820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_15825	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LYZ39_15830	COG1538	Outer membrane efflux protein
LYZ39_15840	COG1126	abc transporter atp-binding protein
LYZ39_15845	COG0765	amino acid transport
LYZ39_15850	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_15855	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LYZ39_15865	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LYZ39_15895	COG4566	intracellular signal transduction
LYZ39_15925	COG2897	thiosulfate sulfurtransferase activity
LYZ39_15945	COG0583	DNA-binding transcription factor activity
LYZ39_15965	COG1126	abc transporter atp-binding protein
LYZ39_15975	COG0765	amino acid transport
LYZ39_15985	COG0277	FAD linked oxidase domain protein
LYZ39_16005	COG2175	clavaminate synthase activity
LYZ39_16015	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
LYZ39_16045	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LYZ39_16055	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_16090	COG1335	isochorismatase
LYZ39_16120	COG2207	Transcriptional regulator
LYZ39_16125	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LYZ39_16130	COG3608	succinylglutamate desuccinylase aspartoacylase
LYZ39_16145	COG1414	Transcriptional regulator
LYZ39_16155	COG2814	Major facilitator Superfamily
LYZ39_16165	COG4191	Histidine kinase
LYZ39_16165	COG0784	Response regulator, receiver
LYZ39_16225	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_16240	COG0583	DNA-binding transcription factor activity
LYZ39_16245	COG0277	FAD linked oxidase domain protein
LYZ39_16245	COG0247	lactate metabolic process
LYZ39_16250	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_16255	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LYZ39_16265	COG3706	GGDEF domain
LYZ39_16280	COG1335	isochorismatase
LYZ39_16290	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_16295	COG0477	Major facilitator Superfamily
LYZ39_16300	COG0251	oxidation-reduction process
LYZ39_16310	COG1960	acyl-CoA dehydrogenase activity
LYZ39_16355	COG0583	DNA-binding transcription factor activity
LYZ39_16370	COG4948	Mandelate Racemase Muconate Lactonizing
LYZ39_16390	COG0446	pyridine nucleotide-disulphide oxidoreductase
LYZ39_16395	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LYZ39_16420	COG2010	Cytochrome c
LYZ39_16430	COG0737	Belongs to the 5'-nucleotidase family
LYZ39_16445	COG0300	oxidoreductase activity
LYZ39_16450	COG2207	Transcriptional regulator
LYZ39_16470	COG2382	esterase
LYZ39_16525	COG2015	COG2015, Alkyl sulfatase and related hydrolases
LYZ39_16535	COG0251	oxidation-reduction process
LYZ39_16550	COG0346	lactoylglutathione lyase activity
LYZ39_16555	COG1802	Transcriptional regulator
LYZ39_16560	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LYZ39_16565	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_16575	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LYZ39_16610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_16615	COG4597	amino acid ABC transporter
LYZ39_16620	COG3154	lipid carrier protein
LYZ39_16625	COG0826	peptidase U32
LYZ39_16630	COG0826	peptidase U32
LYZ39_16635	COG2197	response regulator
LYZ39_16640	COG3850	Histidine kinase
LYZ39_16645	COG1763	Mo-molybdopterin cofactor biosynthetic process
LYZ39_16650	COG0288	reversible hydration of carbon dioxide
LYZ39_16655	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LYZ39_16660	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LYZ39_16665	COG2181	nitrate reductase activity
LYZ39_16670	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
LYZ39_16675	COG1140	nitrate reductase beta subunit
LYZ39_16680	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
LYZ39_16685	COG2223	nitrite transmembrane transporter activity
LYZ39_16715	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LYZ39_16730	COG1538	Outer membrane efflux protein
LYZ39_16735	COG1566	PFAM secretion protein HlyD family protein
LYZ39_16770	COG1328	CTP reductase activity
LYZ39_16785	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_16805	COG2070	2-Nitropropane dioxygenase
LYZ39_16815	COG3848	Pyruvate phosphate dikinase
LYZ39_16815	COG0574	Belongs to the PEP-utilizing enzyme family
LYZ39_16820	COG5002	protein histidine kinase activity
LYZ39_16825	COG0745	RESPONSE REGULATOR receiver
LYZ39_16830	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
LYZ39_16835	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LYZ39_16845	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LYZ39_16850	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LYZ39_16910	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LYZ39_16930	COG0625	glutathione transferase activity
LYZ39_16945	COG2226	methyltransferase
LYZ39_16955	COG1401	restriction endodeoxyribonuclease activity
LYZ39_16975	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LYZ39_17005	COG3386	PFAM SMP-30 Gluconolaconase
LYZ39_17020	COG0583	DNA-binding transcription factor activity
LYZ39_17060	COG5001	Diguanylate cyclase
LYZ39_17060	COG4251	negative regulation of phosphorylation
LYZ39_17060	COG3706	GGDEF domain
LYZ39_17060	COG2203	Gaf domain
LYZ39_17070	COG0583	DNA-binding transcription factor activity
LYZ39_17075	COG0604	alcohol dehydrogenase
LYZ39_17085	COG0640	Transcriptional regulator
LYZ39_17095	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
LYZ39_17105	COG1414	Transcriptional regulator
LYZ39_17110	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LYZ39_17115	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LYZ39_17120	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LYZ39_17125	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_17130	COG3485	protocatechuate 3,4-dioxygenase
LYZ39_17135	COG3485	protocatechuate 3,4-dioxygenase
LYZ39_17140	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LYZ39_17145	COG0783	Belongs to the Dps family
LYZ39_17155	COG2879	small protein
LYZ39_17160	COG1966	Carbon starvation protein
LYZ39_17180	COG4521	taurine ABC transporter
LYZ39_17185	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
LYZ39_17190	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_17210	COG0523	cobalamin synthesis protein
LYZ39_17230	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_17235	COG0601	transmembrane transport
LYZ39_17240	COG0747	negative chemotaxis
LYZ39_17255	COG1414	Transcriptional regulator
LYZ39_17260	COG0513	Belongs to the DEAD box helicase family
LYZ39_17285	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_17290	COG0415	Belongs to the DNA photolyase family
LYZ39_17295	COG0840	transmembrane signaling receptor activity
LYZ39_17315	COG0386	Belongs to the glutathione peroxidase family
LYZ39_17320	COG1522	sequence-specific DNA binding
LYZ39_17330	COG0625	glutathione transferase activity
LYZ39_17345	COG0095	Lipoate-protein ligase
LYZ39_17355	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LYZ39_17360	COG0010	Belongs to the arginase family
LYZ39_17365	COG1126	abc transporter atp-binding protein
LYZ39_17370	COG0765	amino acid transport
LYZ39_17375	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_17390	COG0084	hydrolase, TatD family'
LYZ39_17395	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LYZ39_17400	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LYZ39_17405	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LYZ39_17430	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LYZ39_17435	COG1960	acyl-CoA dehydrogenase activity
LYZ39_17445	COG2867	negative regulation of translational initiation
LYZ39_17450	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LYZ39_17470	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LYZ39_17470	COG0519	Catalyzes the synthesis of GMP from XMP
LYZ39_17475	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LYZ39_17475	COG2169	Transcriptional regulator
LYZ39_17495	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LYZ39_17500	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LYZ39_17515	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LYZ39_17520	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LYZ39_17525	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
LYZ39_17530	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LYZ39_17535	COG0750	zinc metalloprotease
LYZ39_17540	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
LYZ39_17545	COG0575	Belongs to the CDS family
LYZ39_17550	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LYZ39_17555	COG0233	cytoplasmic translational termination
LYZ39_17560	COG0528	UMP kinase activity
LYZ39_17565	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LYZ39_17570	COG0052	Belongs to the universal ribosomal protein uS2 family
LYZ39_17575	COG0024	Methionine aminopeptidase
LYZ39_17580	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LYZ39_17590	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
LYZ39_17595	COG1451	nucleotide metabolic process
LYZ39_17605	COG1286	toxin biosynthetic process
LYZ39_17615	COG0285	dihydrofolate synthase activity
LYZ39_17630	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_17645	COG1334	flagellar protein FlaG
LYZ39_17650	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LYZ39_17670	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LYZ39_17680	COG1677	Flagellar hook-basal body complex protein FliE
LYZ39_17690	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LYZ39_17725	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LYZ39_17740	COG1987	bacterial-type flagellum assembly
LYZ39_17750	COG0840	transmembrane signaling receptor activity
LYZ39_17755	COG0840	transmembrane signaling receptor activity
LYZ39_17765	COG0840	transmembrane signaling receptor activity
LYZ39_17770	COG0840	transmembrane signaling receptor activity
LYZ39_17780	COG1256	bacterial-type flagellum assembly
LYZ39_17785	COG3951	Flagellar rod assembly protein muramidase FlgJ
LYZ39_17785	COG1705	Flagellar rod assembly protein muramidase FlgJ
LYZ39_17805	COG4787	bacterial-type flagellum-dependent cell motility
LYZ39_17820	COG1558	bacterial-type flagellum-dependent cell motility
LYZ39_17825	COG1815	bacterial-type flagellum-dependent cell motility
LYZ39_17835	COG2747	anti-sigma28 factor FlgM
LYZ39_17850	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LYZ39_17860	COG0840	transmembrane signaling receptor activity
LYZ39_17865	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
LYZ39_17870	COG0745	RESPONSE REGULATOR receiver
LYZ39_17875	COG2201	protein-glutamate methylesterase activity
LYZ39_17880	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LYZ39_17885	COG0840	transmembrane signaling receptor activity
LYZ39_17890	COG0835	chemotaxis
LYZ39_17900	COG0745	RESPONSE REGULATOR receiver
LYZ39_17925	COG1191	sigma factor activity
LYZ39_17945	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LYZ39_17955	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
LYZ39_18015	COG0508	dehydrogenase complex catalyzes the overall conversion of
LYZ39_18030	COG4566	intracellular signal transduction
LYZ39_18035	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LYZ39_18040	COG0339	signal peptide processing
LYZ39_18045	COG1999	signal sequence binding
LYZ39_18050	COG2261	transglycosylase associated protein
LYZ39_18070	COG0583	DNA-binding transcription factor activity
LYZ39_18075	COG1187	pseudouridine synthase activity
LYZ39_18080	COG3161	chorismate lyase activity
LYZ39_18110	COG0066	3-isopropylmalate dehydratase activity
LYZ39_18115	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LYZ39_18145	COG2188	Transcriptional regulator
LYZ39_18180	COG4681	YaeQ
LYZ39_18185	COG1280	lysine exporter protein (LysE YggA)
LYZ39_18190	COG4172	Belongs to the ABC transporter superfamily
LYZ39_18195	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_18200	COG0601	transmembrane transport
LYZ39_18205	COG0747	negative chemotaxis
LYZ39_18215	COG0583	DNA-binding transcription factor activity
LYZ39_18310	COG0668	transmembrane transport
LYZ39_18315	COG0165	Argininosuccinate lyase
LYZ39_18355	COG0022	dehydrogenase e1 component
LYZ39_18400	COG1024	Enoyl-CoA hydratase
LYZ39_18405	COG2186	Transcriptional regulator
LYZ39_18410	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_18415	COG0789	Transcriptional regulator
LYZ39_18425	COG4753	response regulator
LYZ39_18425	COG2207	Transcriptional regulator
LYZ39_18445	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LYZ39_18455	COG2271	Major facilitator Superfamily
LYZ39_18465	COG0307	riboflavin synthase, alpha
LYZ39_18470	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_18490	COG0784	Response regulator, receiver
LYZ39_18490	COG4191	Histidine kinase
LYZ39_18495	COG2204	response regulator
LYZ39_18500	COG1278	Cold shock
LYZ39_18505	COG1546	Belongs to the CinA family
LYZ39_18505	COG1058	Belongs to the CinA family
LYZ39_18510	COG1757	Na H antiporter
LYZ39_18650	COG4608	Belongs to the ABC transporter superfamily
LYZ39_18655	COG0444	Belongs to the ABC transporter superfamily
LYZ39_18670	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_18690	COG0583	DNA-binding transcription factor activity
LYZ39_18695	COG0747	negative chemotaxis
LYZ39_18700	COG2226	methyltransferase
LYZ39_18705	COG2814	Major facilitator Superfamily
LYZ39_18750	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_18775	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_18785	COG1129	ABC transporter
LYZ39_18820	COG1802	Transcriptional regulator
LYZ39_18825	COG5265	(ABC) transporter
LYZ39_18830	COG1280	lysine exporter protein (LysE YggA)
LYZ39_18845	COG4977	sequence-specific DNA binding
LYZ39_18865	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_18870	COG2188	Transcriptional regulator
LYZ39_18885	COG0477	Major facilitator Superfamily
LYZ39_18890	COG0235	Class ii aldolase
LYZ39_18905	COG0583	DNA-binding transcription factor activity
LYZ39_18915	COG2223	nitrite transmembrane transporter activity
LYZ39_18930	COG2610	gluconate transmembrane transporter activity
LYZ39_18935	COG0583	DNA-binding transcription factor activity
LYZ39_18940	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_18945	COG1024	Enoyl-CoA hydratase
LYZ39_18950	COG5001	Diguanylate cyclase
LYZ39_18955	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_18960	COG0129	dihydroxy-acid dehydratase activity
LYZ39_18970	COG1595	DNA-templated transcription, initiation
LYZ39_18975	COG3712	iron ion homeostasis
LYZ39_18985	COG0583	DNA-binding transcription factor activity
LYZ39_18990	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_18995	COG3246	L-lysine catabolic process to acetate
LYZ39_19015	COG3043	anaerobic respiration
LYZ39_19020	COG3005	denitrification pathway
LYZ39_19025	COG4133	protoheme IX ABC transporter activity
LYZ39_19045	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LYZ39_19055	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LYZ39_19100	COG0583	DNA-binding transcription factor activity
LYZ39_19105	COG0667	Aldo Keto reductase
LYZ39_19120	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
LYZ39_19125	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LYZ39_19135	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_19155	COG0697	spore germination
LYZ39_19160	COG3670	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
LYZ39_19165	COG0697	spore germination
LYZ39_19185	COG0183	Belongs to the thiolase family
LYZ39_19190	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_19195	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_19205	COG0583	DNA-binding transcription factor activity
LYZ39_19215	COG1280	lysine exporter protein (LysE YggA)
LYZ39_19230	COG1280	lysine exporter protein (LysE YggA)
LYZ39_19235	COG3245	cytochrome
LYZ39_19245	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LYZ39_19260	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LYZ39_19270	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_19275	COG1960	acyl-CoA dehydrogenase activity
LYZ39_19280	COG2814	Major facilitator Superfamily
LYZ39_19295	COG0625	glutathione transferase activity
LYZ39_19305	COG0583	DNA-binding transcription factor activity
LYZ39_19315	COG0583	DNA-binding transcription factor activity
LYZ39_19330	COG0506	proline dehydrogenase activity
LYZ39_19340	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_19345	COG1959	2 iron, 2 sulfur cluster binding
LYZ39_19355	COG1610	YqeY-like protein
LYZ39_19385	COG0457	Tetratricopeptide repeat
LYZ39_19390	COG1649	PFAM Uncharacterised BCR, COG1649
LYZ39_19390	COG0726	polysaccharide deacetylase
LYZ39_19395	COG1215	transferase activity, transferring glycosyl groups
LYZ39_19405	COG2223	nitrite transmembrane transporter activity
LYZ39_19420	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LYZ39_19435	COG0656	L-ascorbic acid biosynthetic process
LYZ39_19440	COG5265	(ABC) transporter
LYZ39_19455	COG0583	DNA-binding transcription factor activity
LYZ39_19470	COG1116	anion transmembrane transporter activity
LYZ39_19495	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_19530	COG1522	sequence-specific DNA binding
LYZ39_19555	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_19565	COG0456	acetyltransferase
LYZ39_19570	COG0384	phenazine biosynthesis protein PhzF
LYZ39_19575	COG3119	arylsulfatase activity
LYZ39_19605	COG0776	regulation of translation
LYZ39_19610	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LYZ39_19610	COG0072	phenylalanine-tRNA ligase activity
LYZ39_19615	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LYZ39_19620	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LYZ39_19625	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LYZ39_19630	COG0606	chelatase, subunit chli
LYZ39_19635	COG2960	long-chain fatty acid transporting porin activity
LYZ39_19640	COG0347	Belongs to the P(II) protein family
LYZ39_19645	COG0004	ammonium transporteR
LYZ39_19650	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LYZ39_19655	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LYZ39_19670	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LYZ39_19675	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LYZ39_19680	COG2197	response regulator
LYZ39_19685	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LYZ39_19715	COG0601	transmembrane transport
LYZ39_19720	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_19725	COG4172	Belongs to the ABC transporter superfamily
LYZ39_19745	COG4774	siderophore transport
LYZ39_19750	COG4607	ABC-type enterochelin transport system periplasmic component
LYZ39_19755	COG4604	ABC transporter, ATP-binding protein
LYZ39_19760	COG4605	iron ion homeostasis
LYZ39_19765	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LYZ39_19775	COG1132	(ABC) transporter
LYZ39_19775	COG2375	cellular response to nickel ion
LYZ39_19785	COG1609	Transcriptional regulator
LYZ39_19790	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LYZ39_19795	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_19800	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LYZ39_19805	COG0129	dihydroxy-acid dehydratase activity
LYZ39_19830	COG0135	phosphoribosylanthranilate isomerase activity
LYZ39_19835	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LYZ39_19840	COG0101	tRNA pseudouridine synthase activity
LYZ39_19850	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LYZ39_19870	COG1538	Outer membrane efflux protein
LYZ39_19880	COG2274	protein secretion by the type I secretion system
LYZ39_19885	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_19920	COG4783	chaperone-mediated protein folding
LYZ39_19925	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LYZ39_19940	COG2205	protein histidine kinase activity
LYZ39_19950	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LYZ39_19960	COG1295	ribonuclease BN
LYZ39_19970	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LYZ39_20000	COG4964	Belongs to the GSP D family
LYZ39_20045	COG0330	HflC and HflK could
LYZ39_20060	COG3728	DNA packaging
LYZ39_20060	COG5484	DNA packaging
LYZ39_20105	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LYZ39_20110	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LYZ39_20115	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LYZ39_20120	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
LYZ39_20125	COG0330	HflC and HflK could
LYZ39_20130	COG0330	HflC and HflK could
LYZ39_20135	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LYZ39_20140	COG1923	regulation of RNA biosynthetic process
LYZ39_20145	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LYZ39_20150	COG1160	GTP binding
LYZ39_20155	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LYZ39_20160	COG2976	Protein conserved in bacteria
LYZ39_20180	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LYZ39_20185	COG0105	UTP biosynthetic process
LYZ39_20190	COG0525	valine-tRNA ligase activity
LYZ39_20195	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_20200	COG1126	abc transporter atp-binding protein
LYZ39_20205	COG0765	amino acid transport
LYZ39_20210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_20215	COG1396	sequence-specific DNA binding
LYZ39_20220	COG0336	Belongs to the RNA methyltransferase TrmD family
LYZ39_20225	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LYZ39_20230	COG0228	four-way junction DNA binding
LYZ39_20240	COG0425	Belongs to the sulfur carrier protein TusA family
LYZ39_20245	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LYZ39_20265	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LYZ39_20295	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_20310	COG2076	Multidrug Resistance protein
LYZ39_20315	COG0633	Ferredoxin
LYZ39_20315	COG3217	Mosc domain protein beta barrel domain protein
LYZ39_20320	COG5285	phytanoyl-CoA dioxygenase
LYZ39_20325	COG0662	Cupin 2, conserved barrel domain protein
LYZ39_20350	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LYZ39_20355	COG2358	TRAP transporter, solute receptor (TAXI family
LYZ39_20365	COG2311	Membrane
LYZ39_20380	COG0187	DNA topoisomerase II activity
LYZ39_20390	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LYZ39_20400	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
LYZ39_20405	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LYZ39_20425	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LYZ39_20435	COG3391	amine dehydrogenase activity
LYZ39_20475	COG1566	PFAM secretion protein HlyD family protein
LYZ39_20480	COG2814	Major facilitator Superfamily
LYZ39_20490	COG0473	3-isopropylmalate dehydrogenase activity
LYZ39_20495	COG0433	COG0433 Predicted ATPase
LYZ39_20500	COG0217	transcriptional regulatory protein
LYZ39_20505	COG0151	Belongs to the GarS family
LYZ39_20515	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LYZ39_20520	COG0799	negative regulation of ribosome biogenesis
LYZ39_20525	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LYZ39_20535	COG1301	dicarboxylic acid transport
LYZ39_20545	COG4191	Histidine kinase
LYZ39_20550	COG2204	response regulator
LYZ39_20580	COG1530	ribonuclease E activity
LYZ39_20600	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LYZ39_20600	COG0475	glutathione-regulated potassium exporter activity
LYZ39_20605	COG1132	(ABC) transporter
LYZ39_20645	COG0726	polysaccharide deacetylase
LYZ39_20665	COG1643	Atp-dependent helicase
LYZ39_20670	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LYZ39_20670	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LYZ39_20675	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LYZ39_20685	COG0704	Plays a role in the regulation of phosphate uptake
LYZ39_20690	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LYZ39_20695	COG1960	acyl-CoA dehydrogenase activity
LYZ39_20725	COG1177	transmembrane transport
LYZ39_20730	COG1176	ABC-type spermidine putrescine transport system, permease component I
LYZ39_20735	COG3842	ATPase activity
LYZ39_20745	COG3642	lipopolysaccharide core region biosynthetic process
LYZ39_20755	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LYZ39_20760	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LYZ39_20770	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LYZ39_20770	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LYZ39_20785	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LYZ39_20790	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LYZ39_20815	COG0583	DNA-binding transcription factor activity
LYZ39_20820	COG0137	argininosuccinate synthase activity
LYZ39_20825	COG3158	transport of potassium into the cell
LYZ39_20830	COG0642	Histidine kinase
LYZ39_20860	COG0776	regulation of translation
LYZ39_20865	COG3128	pkhd-type hydroxylase
LYZ39_20870	COG0626	cystathionine gamma-synthase activity
LYZ39_20875	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LYZ39_20880	COG0557	exoribonuclease II activity
LYZ39_20915	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LYZ39_20920	COG2391	methyltransferase activity
LYZ39_20925	COG0069	glutamate synthase activity
LYZ39_20930	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LYZ39_21025	COG0697	spore germination
LYZ39_21050	COG0628	permease
LYZ39_21075	COG3909	cytochrome
LYZ39_21085	COG0625	glutathione transferase activity
LYZ39_21090	COG0730	response to heat
LYZ39_21095	COG0482	sulfurtransferase activity
LYZ39_21100	COG0583	DNA-binding transcription factor activity
LYZ39_21130	COG0247	lactate metabolic process
LYZ39_21135	COG0277	FAD linked oxidase domain protein
LYZ39_21140	COG0277	FAD linked oxidase domain protein
LYZ39_21145	COG1414	Transcriptional regulator
LYZ39_21150	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_21165	COG0277	FAD linked oxidase domain protein
LYZ39_21170	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LYZ39_21175	COG0312	modulator of DNA gyrase
LYZ39_21190	COG0308	aminopeptidase N
LYZ39_21195	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
LYZ39_21215	COG0436	Aminotransferase
LYZ39_21225	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LYZ39_21230	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LYZ39_21250	COG0559	Belongs to the binding-protein-dependent transport system permease family
LYZ39_21265	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_21280	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_21290	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LYZ39_21310	COG0181	hydroxymethylbilane synthase activity
LYZ39_21315	COG0861	Integral membrane protein TerC family
LYZ39_21320	COG0861	Integral membrane protein TerC family
LYZ39_21325	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LYZ39_21330	COG0045	succinate-CoA ligase (ADP-forming) activity
LYZ39_21350	COG2137	regulation of response to DNA damage stimulus
LYZ39_21355	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LYZ39_21390	COG0540	Belongs to the ATCase OTCase family
LYZ39_21440	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_21475	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LYZ39_21485	COG0305	Participates in initiation and elongation during chromosome replication
LYZ39_21495	COG0359	binds to the 23S rRNA
LYZ39_21500	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LYZ39_21505	COG2965	DNA replication, synthesis of RNA primer
LYZ39_21510	COG0360	Binds together with S18 to 16S ribosomal RNA
LYZ39_21515	COG3739	integral membrane protein
LYZ39_21520	COG1469	GTP cyclohydrolase I activity
LYZ39_21530	COG0142	geranyltranstransferase activity
LYZ39_21535	COG1722	exodeoxyribonuclease VII activity
LYZ39_21545	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_21570	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LYZ39_21580	COG3842	ATPase activity
LYZ39_21605	COG0501	Belongs to the peptidase M48B family
LYZ39_21610	COG1760	l-serine dehydratase
LYZ39_21615	COG1283	sodium-dependent phosphate transmembrane transporter activity
LYZ39_21625	COG0428	transporter
LYZ39_21640	COG1473	amidohydrolase
LYZ39_21645	COG0583	DNA-binding transcription factor activity
LYZ39_21660	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LYZ39_21665	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LYZ39_21670	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LYZ39_21675	COG0195	Participates in both transcription termination and antitermination
LYZ39_21675	COG2251	uridine kinase activity
LYZ39_21680	COG0779	Required for maturation of 30S ribosomal subunits
LYZ39_21685	COG1187	pseudouridine synthase activity
LYZ39_21690	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LYZ39_21700	COG0583	DNA-binding transcription factor activity
LYZ39_21725	COG0642	Histidine kinase
LYZ39_21730	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LYZ39_21735	COG0625	glutathione transferase activity
LYZ39_21740	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LYZ39_21745	COG1047	Peptidyl-prolyl cis-trans
LYZ39_21750	COG2003	Belongs to the UPF0758 family
LYZ39_21755	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
LYZ39_21760	COG3483	tryptophan 2,3-dioxygenase activity
LYZ39_21765	COG0254	rRNA binding
LYZ39_21775	COG0534	Mate efflux family protein
LYZ39_21785	COG2050	protein possibly involved in aromatic compounds catabolism
LYZ39_21790	COG1024	Enoyl-CoA hydratase
LYZ39_21795	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_21800	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LYZ39_21805	COG2151	metal-sulfur cluster biosynthetic enzyme
LYZ39_21810	COG3396	Phenylacetate-CoA oxygenase
LYZ39_21815	COG3460	Phenylacetate-CoA oxygenase
LYZ39_21820	COG3396	Phenylacetate-CoA oxygenase
LYZ39_21825	COG3327	negative regulation of DNA-templated transcription, initiation
LYZ39_21830	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LYZ39_21835	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LYZ39_21840	COG0501	Belongs to the peptidase M48B family
LYZ39_21845	COG1162	GTPase activity
LYZ39_21855	COG0335	large ribosomal subunit rRNA binding
LYZ39_21890	COG0175	sulfate reduction
LYZ39_21895	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LYZ39_21900	COG4208	sulfate ABC transporter
LYZ39_21905	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LYZ39_21915	COG0450	alkyl hydroperoxide reductase
LYZ39_21920	COG1960	acyl-CoA dehydrogenase activity
LYZ39_21925	COG2985	domain, Protein
LYZ39_21955	COG2951	lytic endotransglycosylase activity
LYZ39_21970	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LYZ39_21975	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LYZ39_21980	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LYZ39_22000	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
LYZ39_22005	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LYZ39_22010	COG0287	Prephenate dehydrogenase
LYZ39_22015	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LYZ39_22025	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
LYZ39_22040	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LYZ39_22065	COG0210	DNA helicase
LYZ39_22070	COG3266	domain, Protein
LYZ39_22070	COG0515	serine threonine protein kinase
LYZ39_22090	COG2951	lytic endotransglycosylase activity
LYZ39_22095	COG2258	MOSC domain
LYZ39_22100	COG2833	Protein of unknown function (DUF455)
LYZ39_22115	COG1132	(ABC) transporter
LYZ39_22120	COG0189	ligase activity
LYZ39_22120	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LYZ39_22130	COG3237	CsbD-like
LYZ39_22140	COG2823	Periplasmic or secreted lipoprotein
LYZ39_22155	COG0672	)-iron permease
LYZ39_22170	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
LYZ39_22175	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_22180	COG3243	poly(R)-hydroxyalkanoic acid synthase
LYZ39_22185	COG1496	oxidoreductase activity
LYZ39_22190	COG0564	pseudouridine synthase activity
LYZ39_22200	COG1199	ATP-dependent helicase activity
LYZ39_22205	COG2183	response to ionizing radiation
LYZ39_22240	COG4774	siderophore transport
LYZ39_22245	COG3712	iron ion homeostasis
LYZ39_22250	COG1595	DNA-templated transcription, initiation
LYZ39_22255	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LYZ39_22260	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LYZ39_22265	COG0508	dehydrogenase complex catalyzes the overall conversion of
LYZ39_22270	COG0567	Dehydrogenase, E1 component
LYZ39_22275	COG1522	sequence-specific DNA binding
LYZ39_22280	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LYZ39_22295	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LYZ39_22300	COG1297	OPT oligopeptide transporter protein
LYZ39_22310	COG0280	phosphate acetyltransferase
LYZ39_22310	COG0281	malic enzyme
LYZ39_22325	COG0372	Belongs to the citrate synthase family
LYZ39_22330	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LYZ39_22335	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LYZ39_22340	COG1053	succinate dehydrogenase
LYZ39_22345	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LYZ39_22350	COG2009	succinate dehydrogenase
LYZ39_22355	COG2188	Transcriptional regulator
LYZ39_22360	COG0039	L-malate dehydrogenase activity
LYZ39_22380	COG1981	membrane
LYZ39_22410	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LYZ39_22420	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LYZ39_22430	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LYZ39_22435	COG0148	phosphopyruvate hydratase activity
LYZ39_22445	COG0504	CTP synthase activity
LYZ39_22460	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LYZ39_22485	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_22495	COG0747	negative chemotaxis
LYZ39_22500	COG4172	Belongs to the ABC transporter superfamily
LYZ39_22505	COG1446	asparaginase
LYZ39_22515	COG2153	protein acetylation
LYZ39_22540	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LYZ39_22550	COG4172	Belongs to the ABC transporter superfamily
LYZ39_22565	COG0747	negative chemotaxis
LYZ39_22580	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LYZ39_22585	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LYZ39_22590	COG0697	spore germination
LYZ39_22595	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LYZ39_22605	COG3193	protein, possibly involved in utilization of glycolate and propanediol
LYZ39_22615	COG0791	NLP P60 protein
LYZ39_22625	COG0583	DNA-binding transcription factor activity
LYZ39_22650	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LYZ39_22700	COG1381	Involved in DNA repair and RecF pathway recombination
LYZ39_22705	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LYZ39_22710	COG0571	ribonuclease III activity
LYZ39_22715	COG0681	Belongs to the peptidase S26 family
LYZ39_22725	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LYZ39_22745	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LYZ39_22750	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LYZ39_22760	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LYZ39_22765	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LYZ39_22770	COG0416	fatty acid biosynthetic process
LYZ39_22775	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LYZ39_22780	COG1399	metal-binding, possibly nucleic acid-binding protein
LYZ39_22785	COG0424	maF-like protein
LYZ39_22795	COG3023	N-Acetylmuramoyl-L-alanine amidase
LYZ39_22800	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
LYZ39_22805	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LYZ39_22810	COG0546	phosphoglycolate phosphatase activity
LYZ39_22815	COG0564	pseudouridine synthase activity
LYZ39_22820	COG1530	ribonuclease E activity
LYZ39_22825	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LYZ39_22830	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LYZ39_22835	COG0159	tryptophan synthase activity
LYZ39_22845	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LYZ39_22855	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LYZ39_22860	COG3228	Belongs to the MtfA family
LYZ39_22870	COG0251	oxidation-reduction process
LYZ39_22875	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LYZ39_22880	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
LYZ39_22895	COG2878	Part of a membrane complex involved in electron transport
LYZ39_22900	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LYZ39_22935	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LYZ39_22960	COG0559	Belongs to the binding-protein-dependent transport system permease family
LYZ39_22980	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LYZ39_22990	COG0183	Belongs to the thiolase family
LYZ39_23000	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_23000	COG1024	Enoyl-CoA hydratase
LYZ39_23005	COG0511	ligase activity, forming carbon-carbon bonds
LYZ39_23010	COG0439	Biotin carboxylase
LYZ39_23020	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_23030	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_23035	COG2084	Dehydrogenase
LYZ39_23040	COG1414	Transcriptional regulator
LYZ39_23070	COG1268	BioY protein
LYZ39_23075	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LYZ39_23080	COG1122	ATPase activity
LYZ39_23085	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LYZ39_23090	COG2917	probably involved in intracellular septation
LYZ39_23100	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LYZ39_23105	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LYZ39_23115	COG1196	nuclear chromosome segregation
LYZ39_23120	COG0477	Major facilitator Superfamily
LYZ39_23125	COG1573	uracil-dna glycosylase
LYZ39_23130	COG1214	PFAM Peptidase M22, glycoprotease
LYZ39_23145	COG0450	alkyl hydroperoxide reductase
LYZ39_23150	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LYZ39_23160	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LYZ39_23165	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
LYZ39_23170	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LYZ39_23175	COG0560	Phosphoserine phosphatase
LYZ39_23180	COG4774	siderophore transport
LYZ39_23190	COG1007	ATP synthesis coupled electron transport
LYZ39_23205	COG0713	ATP synthesis coupled electron transport
LYZ39_23215	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LYZ39_23220	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LYZ39_23225	COG1034	ATP synthesis coupled electron transport
LYZ39_23235	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
LYZ39_23240	COG0649	NAD binding
LYZ39_23245	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LYZ39_23250	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LYZ39_23255	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LYZ39_23260	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LYZ39_23275	COG0287	Prephenate dehydrogenase
LYZ39_23285	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LYZ39_23290	COG1597	lipid kinase activity
LYZ39_23305	COG0583	DNA-binding transcription factor activity
LYZ39_23320	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LYZ39_23325	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_23330	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LYZ39_23345	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_23350	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LYZ39_23385	COG0747	negative chemotaxis
LYZ39_23390	COG0747	negative chemotaxis
LYZ39_23420	COG2354	Protein conserved in bacteria
LYZ39_23435	COG3604	Transcriptional regulator
LYZ39_23470	COG1278	Cold shock
LYZ39_23485	COG0583	DNA-binding transcription factor activity
LYZ39_23495	COG0747	negative chemotaxis
LYZ39_23500	COG4172	Belongs to the ABC transporter superfamily
LYZ39_23505	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_23515	COG0583	DNA-binding transcription factor activity
LYZ39_23520	COG3119	arylsulfatase activity
LYZ39_23540	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_23545	COG2851	Citrate transporter
LYZ39_23565	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_23570	COG4221	oxidoreductase activity
LYZ39_23575	COG2207	Transcriptional regulator
LYZ39_23600	COG0501	Belongs to the peptidase M48B family
LYZ39_23615	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LYZ39_23675	COG0583	DNA-binding transcription factor activity
LYZ39_23695	COG0251	oxidation-reduction process
LYZ39_23705	COG0747	negative chemotaxis
LYZ39_23710	COG0601	transmembrane transport
LYZ39_23715	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_23720	COG0444	Belongs to the ABC transporter superfamily
LYZ39_23725	COG4608	Belongs to the ABC transporter superfamily
LYZ39_23730	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
LYZ39_23760	COG5383	Protein conserved in bacteria
LYZ39_23765	COG0583	DNA-binding transcription factor activity
LYZ39_23770	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LYZ39_23775	COG0149	triose-phosphate isomerase activity
LYZ39_23780	COG0604	alcohol dehydrogenase
LYZ39_23780	COG3321	synthase
LYZ39_23795	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LYZ39_23805	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_23870	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LYZ39_23890	COG1301	dicarboxylic acid transport
LYZ39_23915	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LYZ39_23925	COG1185	polyribonucleotide nucleotidyltransferase activity
LYZ39_23930	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LYZ39_23940	COG1183	phosphatidylcholine synthase activity
LYZ39_23945	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LYZ39_23950	COG0440	acetolactate synthase activity
LYZ39_23955	COG0028	Belongs to the TPP enzyme family
LYZ39_23960	COG1289	transmembrane transporter activity
LYZ39_23965	COG3022	response to hydroperoxide
LYZ39_23970	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_24005	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LYZ39_24010	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LYZ39_24015	COG0477	Major facilitator Superfamily
LYZ39_24035	COG4948	Mandelate Racemase Muconate Lactonizing
LYZ39_24075	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LYZ39_24080	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LYZ39_24085	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LYZ39_24100	COG0601	transmembrane transport
LYZ39_24120	COG0517	IMP dehydrogenase activity
LYZ39_24120	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LYZ39_24125	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
LYZ39_24135	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LYZ39_24140	COG1674	ftsk spoiiie
LYZ39_24145	COG0492	ferredoxin-NADP+ reductase activity
LYZ39_24150	COG1193	negative regulation of DNA recombination
LYZ39_24170	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LYZ39_24185	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
LYZ39_24190	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
LYZ39_24195	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
LYZ39_24200	COG2205	protein histidine kinase activity
LYZ39_24205	COG0745	RESPONSE REGULATOR receiver
LYZ39_24220	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LYZ39_24225	COG0840	transmembrane signaling receptor activity
LYZ39_24255	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LYZ39_24280	COG0612	Peptidase, M16
LYZ39_24290	COG0484	heat shock protein binding
LYZ39_24295	COG0443	Heat shock 70 kDa protein
LYZ39_24305	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LYZ39_24315	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
LYZ39_24320	COG1420	regulation of RNA biosynthetic process
LYZ39_24330	COG0497	DNA recombination
LYZ39_24335	COG0735	belongs to the Fur family
LYZ39_24340	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LYZ39_24400	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LYZ39_24405	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
LYZ39_24410	COG0167	dihydroorotate dehydrogenase activity
LYZ39_24425	COG1414	Transcriptional regulator
LYZ39_24445	COG0513	Belongs to the DEAD box helicase family
LYZ39_24475	COG0429	hydrolase of the alpha beta-hydrolase fold
LYZ39_24480	COG4783	chaperone-mediated protein folding
LYZ39_24495	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
LYZ39_24500	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LYZ39_24515	COG0006	proline dipeptidase activity
LYZ39_24525	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LYZ39_24550	COG0632	four-way junction helicase activity
LYZ39_24555	COG1090	epimerase
LYZ39_24565	COG2255	four-way junction helicase activity
LYZ39_24570	COG4191	Histidine kinase
LYZ39_24585	COG0514	ATP-dependent DNA helicase (RecQ)
LYZ39_24600	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LYZ39_24605	COG0850	regulation of cytokinetic process
LYZ39_24610	COG2894	cell division
LYZ39_24615	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LYZ39_24630	COG0488	(ABC) transporter
LYZ39_24650	COG4608	Belongs to the ABC transporter superfamily
LYZ39_24655	COG0444	Belongs to the ABC transporter superfamily
LYZ39_24660	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_24665	COG0601	transmembrane transport
LYZ39_24670	COG0747	negative chemotaxis
LYZ39_24695	COG4638	Rieske (2fe-2S)
LYZ39_24700	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
LYZ39_24720	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
LYZ39_24725	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_24740	COG0411	ABC transporter
LYZ39_24750	COG1216	Glycosyl transferase, family 2
LYZ39_24750	COG0463	Glycosyl transferase, family 2
LYZ39_24765	COG0800	Aldolase
LYZ39_24775	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LYZ39_24810	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LYZ39_24815	COG1538	Outer membrane efflux protein
LYZ39_24820	COG1136	(ABC) transporter
LYZ39_24820	COG0577	efflux transmembrane transporter activity
LYZ39_24825	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LYZ39_24840	COG0259	pyridoxamine-phosphate oxidase activity
LYZ39_24850	COG0579	oxidoreductase
LYZ39_24860	COG0583	DNA-binding transcription factor activity
LYZ39_24865	COG1960	acyl-CoA dehydrogenase activity
LYZ39_24875	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_24880	COG0531	amino acid
LYZ39_24885	COG0405	Gamma-glutamyltransferase
LYZ39_24895	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_24900	COG0114	fumarate hydratase activity
LYZ39_24905	COG0802	atpase or kinase
LYZ39_24910	COG0860	N-Acetylmuramoyl-L-alanine amidase
LYZ39_24915	COG0586	Pfam SNARE associated Golgi protein
LYZ39_24920	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LYZ39_24925	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LYZ39_24930	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LYZ39_24945	COG0617	tRNA 3'-terminal CCA addition
LYZ39_24955	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LYZ39_24960	COG2301	Belongs to the HpcH HpaI aldolase family
LYZ39_24965	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_24970	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
LYZ39_24975	COG0583	DNA-binding transcription factor activity
LYZ39_24980	COG1024	Enoyl-CoA hydratase
LYZ39_24990	COG1960	acyl-CoA dehydrogenase activity
LYZ39_25000	COG0183	Belongs to the thiolase family
LYZ39_25005	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_25030	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_25035	COG2030	dehydratase
LYZ39_25040	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_25060	COG1024	Enoyl-CoA hydratase
LYZ39_25065	COG0752	glycyl-tRNA synthetase alpha subunit
LYZ39_25070	COG0751	glycine-tRNA ligase activity
LYZ39_25075	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LYZ39_25080	COG0204	Acyl-transferase
LYZ39_25100	COG0242	peptide deformylase activity
LYZ39_25105	COG1960	acyl-CoA dehydrogenase activity
LYZ39_25110	COG0700	Nucleoside recognition
LYZ39_25115	COG0469	pyruvate kinase activity
LYZ39_25120	COG1929	Belongs to the glycerate kinase type-1 family
LYZ39_25125	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LYZ39_25130	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LYZ39_25155	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LYZ39_25170	COG2154	pterin-4-alpha-carbinolamine dehydratase
LYZ39_25200	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LYZ39_25205	COG1120	ATPase activity
LYZ39_25220	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LYZ39_25230	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_25245	COG2982	Protein involved in outer membrane biogenesis
LYZ39_25250	COG1368	sulfuric ester hydrolase activity
LYZ39_25255	COG2818	Glycosylase
LYZ39_25270	COG0735	belongs to the Fur family
LYZ39_25285	COG2610	gluconate transmembrane transporter activity
LYZ39_25300	COG0443	Heat shock 70 kDa protein
LYZ39_25390	COG2011	ABC-type metal ion transport system permease component
LYZ39_25395	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LYZ39_25400	COG1501	Belongs to the glycosyl hydrolase 31 family
LYZ39_25405	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
LYZ39_25405	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_25410	COG0483	inositol monophosphate 1-phosphatase activity
LYZ39_25415	COG0318	PFAM AMP-dependent synthetase and ligase
LYZ39_25420	COG1473	amidohydrolase
LYZ39_25430	COG2855	membrane
LYZ39_25440	COG2239	Acts as a magnesium transporter
LYZ39_25455	COG1522	sequence-specific DNA binding
LYZ39_25470	COG0028	Belongs to the TPP enzyme family
LYZ39_25475	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_25490	COG0653	protein targeting
LYZ39_25495	COG0739	heme binding
LYZ39_25505	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
LYZ39_25520	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LYZ39_25525	COG1181	Belongs to the D-alanine--D-alanine ligase family
LYZ39_25530	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LYZ39_25535	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LYZ39_25545	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LYZ39_25550	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LYZ39_25555	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LYZ39_25565	COG3116	cell division
LYZ39_25570	COG0275	rRNA processing
LYZ39_25575	COG2001	Belongs to the MraZ family
LYZ39_25585	COG0488	(ABC) transporter
LYZ39_25590	COG0418	dihydroorotase activity
LYZ39_25595	COG1473	amidohydrolase
LYZ39_25665	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LYZ39_25670	COG4654	Cytochrome c, class I
LYZ39_25675	COG0129	dihydroxy-acid dehydratase activity
LYZ39_25720	COG2084	Dehydrogenase
LYZ39_25735	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LYZ39_25765	COG0442	prolyl-tRNA aminoacylation
LYZ39_25770	COG0824	Thioesterase
LYZ39_25775	COG0811	peptide transport
LYZ39_25780	COG0848	biopolymer transport protein
LYZ39_25790	COG0823	Involved in the tonB-independent uptake of proteins
LYZ39_25805	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LYZ39_25810	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
LYZ39_25825	COG1522	sequence-specific DNA binding
LYZ39_25835	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LYZ39_25850	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LYZ39_25855	COG0697	spore germination
LYZ39_25865	COG1346	cytolysis
LYZ39_25875	COG0583	DNA-binding transcription factor activity
LYZ39_25890	COG0583	DNA-binding transcription factor activity
LYZ39_25905	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LYZ39_25910	COG0463	Glycosyl transferase, family 2
LYZ39_25920	COG0786	glutamate:sodium symporter activity
LYZ39_25935	COG1671	Belongs to the UPF0178 family
LYZ39_25955	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LYZ39_25965	COG0328	RNA-DNA hybrid ribonuclease activity
LYZ39_25970	COG2226	methyltransferase
LYZ39_25975	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LYZ39_25980	COG1388	LysM domain
LYZ39_25980	COG0741	lytic transglycosylase activity
LYZ39_26020	COG1366	Belongs to the anti-sigma-factor antagonist family
LYZ39_26025	COG2172	sigma factor antagonist activity
LYZ39_26030	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LYZ39_26040	COG2770	Histidine kinase
LYZ39_26040	COG2208	phosphoserine phosphatase activity
LYZ39_26070	COG4792	protein secretion
LYZ39_26075	COG4791	protein targeting
LYZ39_26080	COG4794	Type iii secretion
LYZ39_26085	COG4790	Type iii secretion
LYZ39_26090	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LYZ39_26120	COG4669	(LipO)protein
LYZ39_26190	COG4789	Type iii secretion
LYZ39_26240	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_26255	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_26260	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LYZ39_26265	COG0583	DNA-binding transcription factor activity
LYZ39_26280	COG2719	SpoVR family
LYZ39_26285	COG2718	Belongs to the UPF0229 family
LYZ39_26290	COG2766	serine protein kinase
LYZ39_26305	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LYZ39_26305	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LYZ39_26315	COG2207	Transcriptional regulator
LYZ39_26320	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LYZ39_26325	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LYZ39_26335	COG1881	PFAM PEBP family protein
LYZ39_26340	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LYZ39_26350	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LYZ39_26355	COG0316	Belongs to the HesB IscA family
LYZ39_26365	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LYZ39_26370	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LYZ39_26375	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LYZ39_26390	COG4177	L-phenylalanine transmembrane transporter activity
LYZ39_26395	COG0559	Belongs to the binding-protein-dependent transport system permease family
LYZ39_26405	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LYZ39_26410	COG0312	modulator of DNA gyrase
LYZ39_26415	COG3028	Belongs to the UPF0307 family
LYZ39_26430	COG1116	anion transmembrane transporter activity
LYZ39_26435	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_26440	COG1335	isochorismatase
LYZ39_26445	COG1042	CoA-binding domain protein
LYZ39_26445	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LYZ39_26445	COG0045	succinate-CoA ligase (ADP-forming) activity
LYZ39_26450	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LYZ39_26465	COG0583	DNA-binding transcription factor activity
LYZ39_26475	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_26480	COG1522	sequence-specific DNA binding
LYZ39_26510	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LYZ39_26515	COG1696	Membrane protein involved in D-alanine export
LYZ39_26540	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LYZ39_26540	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LYZ39_26550	COG2264	protein methyltransferase activity
LYZ39_26555	COG0439	Biotin carboxylase
LYZ39_26560	COG0511	ligase activity, forming carbon-carbon bonds
LYZ39_26565	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LYZ39_26570	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LYZ39_26575	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LYZ39_26580	COG3150	esterase
LYZ39_26585	COG0557	exoribonuclease II activity
LYZ39_26605	COG1175	transmembrane transport
LYZ39_26620	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LYZ39_26625	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LYZ39_26635	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LYZ39_26645	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LYZ39_26655	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LYZ39_26660	COG1678	Uncharacterized ACR, COG1678
LYZ39_26675	COG0352	thiamine-phosphate diphosphorylase activity
LYZ39_26680	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LYZ39_26685	COG0741	lytic transglycosylase activity
LYZ39_26695	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_26700	COG1335	isochorismatase
LYZ39_26705	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
LYZ39_26750	COG1024	Enoyl-CoA hydratase
LYZ39_26755	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_26765	COG2202	Pas domain
LYZ39_26765	COG2200	EAL domain
LYZ39_26765	COG2199	diguanylate cyclase activity
LYZ39_26830	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LYZ39_26865	COG0583	DNA-binding transcription factor activity
LYZ39_26870	COG0683	leucine binding
LYZ39_26875	COG0154	amidase activity
LYZ39_26885	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
LYZ39_26890	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LYZ39_26920	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
LYZ39_26925	COG0237	dephospho-CoA kinase activity
LYZ39_26945	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LYZ39_26950	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
LYZ39_26960	COG0477	Major facilitator Superfamily
LYZ39_26975	COG1194	a g-specific adenine glycosylase
LYZ39_26985	COG2226	methyltransferase
LYZ39_26990	COG0246	Mannitol dehydrogenase
LYZ39_26995	COG4948	Mandelate Racemase Muconate Lactonizing
LYZ39_27000	COG1063	alcohol dehydrogenase
LYZ39_27005	COG2186	Transcriptional regulator
LYZ39_27015	COG4771	TonB-dependent receptor
LYZ39_27020	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LYZ39_27025	COG2022	thiamine diphosphate biosynthetic process
LYZ39_27030	COG0351	phosphomethylpyrimidine kinase
LYZ39_27035	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LYZ39_27045	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LYZ39_27055	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LYZ39_27070	COG2226	methyltransferase
LYZ39_27075	COG0745	RESPONSE REGULATOR receiver
LYZ39_27090	COG0642	Histidine kinase
LYZ39_27095	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
LYZ39_27100	COG2132	Multicopper oxidase
LYZ39_27115	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LYZ39_27120	COG0583	DNA-binding transcription factor activity
LYZ39_27135	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LYZ39_27140	COG1984	allophanate hydrolase subunit 2
LYZ39_27150	COG1802	Transcriptional regulator
LYZ39_27155	COG2860	membrane
LYZ39_27165	COG2223	nitrite transmembrane transporter activity
LYZ39_27170	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LYZ39_27170	COG2813	Specifically methylates the guanine in position
LYZ39_27180	COG2188	Transcriptional regulator
LYZ39_27185	COG2721	sulfolactate sulfo-lyase activity
LYZ39_27190	COG2721	sulfolactate sulfo-lyase activity
LYZ39_27195	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_27200	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LYZ39_27205	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LYZ39_27215	COG2197	response regulator
LYZ39_27230	COG2918	glutathione biosynthetic process
LYZ39_27250	COG0583	DNA-binding transcription factor activity
LYZ39_27260	COG0179	Fumarylacetoacetate (FAA) hydrolase
LYZ39_27305	COG1250	3-hydroxyacyl-CoA dehydrogenase
LYZ39_27310	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_27330	COG1024	Enoyl-CoA hydratase
LYZ39_27335	COG1024	Enoyl-CoA hydratase
LYZ39_27340	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LYZ39_27350	COG0747	negative chemotaxis
LYZ39_27355	COG2988	succinylglutamate desuccinylase activity
LYZ39_27360	COG0747	negative chemotaxis
LYZ39_27365	COG0601	transmembrane transport
LYZ39_27375	COG0444	Belongs to the ABC transporter superfamily
LYZ39_27380	COG4608	Belongs to the ABC transporter superfamily
LYZ39_27390	COG2195	Cleaves the N-terminal amino acid of tripeptides
LYZ39_27395	COG2171	N-acyltransferase activity
LYZ39_27405	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LYZ39_27410	COG0210	DNA helicase
LYZ39_27415	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LYZ39_27420	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LYZ39_27430	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LYZ39_27435	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LYZ39_27440	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LYZ39_27445	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LYZ39_27450	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LYZ39_27455	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LYZ39_27465	COG0356	it plays a direct role in the translocation of protons across the membrane
LYZ39_27480	COG1024	Enoyl-CoA hydratase
LYZ39_27485	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LYZ39_27495	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LYZ39_27515	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LYZ39_27530	COG0037	tRNA processing
LYZ39_27535	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LYZ39_27540	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LYZ39_27545	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LYZ39_27550	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
LYZ39_27555	COG2967	ApaG domain
LYZ39_27560	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LYZ39_27565	COG0546	phosphoglycolate phosphatase activity
LYZ39_27575	COG0512	Glutamine amidotransferase of anthranilate synthase
LYZ39_27580	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LYZ39_27590	COG3284	Transcriptional regulator
LYZ39_27595	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_27625	COG0709	Synthesizes selenophosphate from selenide and ATP
LYZ39_27630	COG1305	Transglutaminase-like
LYZ39_27635	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LYZ39_27645	COG3276	selenocysteine insertion sequence binding
LYZ39_27660	COG2864	formate dehydrogenase
LYZ39_27665	COG0437	4 iron, 4 sulfur cluster binding
LYZ39_27680	COG1607	acyl-coa hydrolase
LYZ39_27705	COG3064	Membrane
LYZ39_27710	COG3585	molybdate ion transport
LYZ39_27715	COG1116	anion transmembrane transporter activity
LYZ39_27720	COG1464	Belongs to the NlpA lipoprotein family
LYZ39_27725	COG2011	ABC-type metal ion transport system permease component
LYZ39_27740	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LYZ39_27745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LYZ39_27750	COG0431	NADPH-dependent FMN reductase
LYZ39_27755	COG1464	Belongs to the NlpA lipoprotein family
LYZ39_27790	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_27805	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LYZ39_27805	COG0543	2 iron, 2 sulfur cluster binding
LYZ39_27815	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_27820	COG3069	C4-dicarboxylate transmembrane transporter activity
LYZ39_27830	COG1802	Transcriptional regulator
LYZ39_27875	COG2814	Major facilitator Superfamily
LYZ39_27880	COG0840	transmembrane signaling receptor activity
LYZ39_27890	COG1228	amidohydrolase
LYZ39_27935	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LYZ39_27940	COG5001	Diguanylate cyclase
LYZ39_27950	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LYZ39_27960	COG3300	MHYT domain
LYZ39_27960	COG5001	Diguanylate cyclase
LYZ39_27970	COG2423	ornithine cyclodeaminase activity
LYZ39_27975	COG1522	sequence-specific DNA binding
LYZ39_27990	COG0583	DNA-binding transcription factor activity
LYZ39_28000	COG4172	Belongs to the ABC transporter superfamily
LYZ39_28005	COG0402	S-adenosylhomocysteine deaminase activity
LYZ39_28010	COG0747	negative chemotaxis
LYZ39_28015	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_28025	COG2423	ornithine cyclodeaminase activity
LYZ39_28030	COG0583	DNA-binding transcription factor activity
LYZ39_28035	COG2814	Major facilitator Superfamily
LYZ39_28055	COG2197	response regulator
LYZ39_28065	COG0583	DNA-binding transcription factor activity
LYZ39_28075	COG1902	pentaerythritol trinitrate reductase activity
LYZ39_28080	COG0583	DNA-binding transcription factor activity
LYZ39_28090	COG0154	amidase activity
LYZ39_28130	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LYZ39_28140	COG0861	Integral membrane protein TerC family
LYZ39_28145	COG0583	DNA-binding transcription factor activity
LYZ39_28160	COG0596	Alpha beta hydrolase
LYZ39_28170	COG1418	mRNA catabolic process
LYZ39_28185	COG3181	Tripartite tricarboxylate transporter family receptor
LYZ39_28210	COG1522	sequence-specific DNA binding
LYZ39_28225	COG2814	Major facilitator Superfamily
LYZ39_28250	COG1999	signal sequence binding
LYZ39_28260	COG1612	heme a metabolic process
LYZ39_28295	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LYZ39_28315	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LYZ39_28320	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LYZ39_28340	COG0069	glutamate synthase activity
LYZ39_28340	COG0070	glutamate synthase
LYZ39_28340	COG0067	glutamate synthase
LYZ39_28350	COG3047	cAMP biosynthetic process
LYZ39_28355	COG0583	DNA-binding transcription factor activity
LYZ39_28360	COG0477	Major facilitator Superfamily
LYZ39_28375	COG1127	ABC transporter
LYZ39_28380	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LYZ39_28385	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LYZ39_28390	COG2853	Lipoprotein
LYZ39_28400	COG1131	(ABC) transporter
LYZ39_28405	COG0842	Transport permease protein
LYZ39_28415	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LYZ39_28420	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LYZ39_28425	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LYZ39_28430	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LYZ39_28435	COG0131	Imidazoleglycerol-phosphate dehydratase
LYZ39_28440	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LYZ39_28445	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LYZ39_28450	COG0107	imidazoleglycerol-phosphate synthase activity
LYZ39_28460	COG0140	phosphoribosyl-ATP diphosphatase activity
LYZ39_28465	COG0537	adenosine 5'-monophosphoramidase activity
LYZ39_28470	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LYZ39_28475	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LYZ39_28490	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LYZ39_28495	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LYZ39_28500	COG1970	mechanosensitive ion channel activity
LYZ39_28505	COG0723	plastoquinol--plastocyanin reductase activity
LYZ39_28510	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LYZ39_28515	COG2857	Cytochrome c1
LYZ39_28520	COG0625	glutathione transferase activity
LYZ39_28525	COG2969	positive regulation of protein catabolic process
LYZ39_28545	COG0154	amidase activity
LYZ39_28550	COG1414	Transcriptional regulator
LYZ39_28555	COG0667	Aldo Keto reductase
LYZ39_28560	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LYZ39_28570	COG1012	belongs to the aldehyde dehydrogenase family
LYZ39_28590	COG0583	DNA-binding transcription factor activity
LYZ39_28600	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LYZ39_28610	COG3708	Transcriptional regulator
LYZ39_28610	COG2207	Transcriptional regulator
LYZ39_28620	COG1160	GTP binding
LYZ39_28625	COG4166	transmembrane transport
LYZ39_28630	COG0601	transmembrane transport
LYZ39_28635	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LYZ39_28650	COG5339	Protein conserved in bacteria
LYZ39_28655	COG5339	Protein conserved in bacteria
LYZ39_28660	COG0513	Belongs to the DEAD box helicase family
LYZ39_28665	COG1280	lysine exporter protein (LysE YggA)
LYZ39_28670	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LYZ39_28690	COG0583	DNA-binding transcription factor activity
LYZ39_28700	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LYZ39_28710	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LYZ39_28715	COG0154	amidase activity
LYZ39_28720	COG1609	Transcriptional regulator
LYZ39_28725	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LYZ39_28730	COG3842	ATPase activity
LYZ39_28735	COG1653	transport
LYZ39_28740	COG1175	transmembrane transport
LYZ39_28745	COG0395	ABC-type sugar transport system, permease component
LYZ39_28760	COG0018	arginyl-trna synthetase
LYZ39_28770	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LYZ39_28790	COG0778	Nitroreductase
LYZ39_28795	COG1280	lysine exporter protein (LysE YggA)
LYZ39_28800	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LYZ39_28810	COG1742	UPF0060 membrane protein
LYZ39_28820	COG1473	amidohydrolase
LYZ39_28825	COG1960	acyl-CoA dehydrogenase activity
LYZ39_28830	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
LYZ39_28835	COG0183	Belongs to the thiolase family
LYZ39_28840	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LYZ39_28850	COG0477	Major facilitator Superfamily
LYZ39_28880	COG0753	catalase activity
LYZ39_28895	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LYZ39_28905	COG1028	Short-chain dehydrogenase reductase Sdr
LYZ39_28915	COG0583	DNA-binding transcription factor activity
LYZ39_28920	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LYZ39_28925	COG0765	amino acid transport