locus-tag	class	description
FOC82_00020	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
FOC82_00025	COG1605	Chorismate mutase
FOC82_00025	COG0077	Prephenate dehydratase
FOC82_00030	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FOC82_00035	COG0287	Prephenate dehydrogenase
FOC82_00040	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
FOC82_00045	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
FOC82_00065	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
FOC82_00070	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
FOC82_00075	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC82_00105	COG2951	lytic endotransglycosylase activity
FOC82_00110	COG0123	including yeast histone deacetylase and acetoin utilization protein
FOC82_00135	COG2985	domain, Protein
FOC82_00145	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_00150	COG1024	Enoyl-CoA hydratase
FOC82_00150	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_00160	COG1960	acyl-CoA dehydrogenase activity
FOC82_00165	COG0450	alkyl hydroperoxide reductase
FOC82_00170	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
FOC82_00180	COG4208	sulfate ABC transporter
FOC82_00185	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FOC82_00190	COG0175	sulfate reduction
FOC82_00220	COG0335	large ribosomal subunit rRNA binding
FOC82_00225	COG0494	nUDIX hydrolase
FOC82_00230	COG1162	GTPase activity
FOC82_00235	COG0501	Belongs to the peptidase M48B family
FOC82_00240	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
FOC82_00265	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
FOC82_00270	COG3327	negative regulation of DNA-templated transcription, initiation
FOC82_00275	COG3396	Phenylacetate-CoA oxygenase
FOC82_00280	COG3460	Phenylacetate-CoA oxygenase
FOC82_00285	COG3396	Phenylacetate-CoA oxygenase
FOC82_00290	COG2151	metal-sulfur cluster biosynthetic enzyme
FOC82_00295	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FOC82_00300	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_00305	COG1024	Enoyl-CoA hydratase
FOC82_00310	COG2050	protein possibly involved in aromatic compounds catabolism
FOC82_00320	COG0534	Mate efflux family protein
FOC82_00335	COG3483	tryptophan 2,3-dioxygenase activity
FOC82_00340	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
FOC82_00345	COG2003	Belongs to the UPF0758 family
FOC82_00350	COG1047	Peptidyl-prolyl cis-trans
FOC82_00355	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
FOC82_00360	COG0625	glutathione transferase activity
FOC82_00365	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC82_00370	COG0642	Histidine kinase
FOC82_00380	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_00415	COG0523	cobalamin synthesis protein
FOC82_00420	COG0583	DNA-binding transcription factor activity
FOC82_00430	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
FOC82_00435	COG1187	pseudouridine synthase activity
FOC82_00440	COG0779	Required for maturation of 30S ribosomal subunits
FOC82_00445	COG2251	uridine kinase activity
FOC82_00445	COG0195	Participates in both transcription termination and antitermination
FOC82_00450	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
FOC82_00455	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
FOC82_00460	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
FOC82_00475	COG0583	DNA-binding transcription factor activity
FOC82_00485	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_00490	COG1473	amidohydrolase
FOC82_00495	COG1611	Belongs to the LOG family
FOC82_00505	COG0428	transporter
FOC82_00520	COG1283	sodium-dependent phosphate transmembrane transporter activity
FOC82_00525	COG1760	l-serine dehydratase
FOC82_00530	COG0501	Belongs to the peptidase M48B family
FOC82_00545	COG0583	DNA-binding transcription factor activity
FOC82_00565	COG3842	ATPase activity
FOC82_00575	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FOC82_00600	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_00610	COG1722	exodeoxyribonuclease VII activity
FOC82_00615	COG0142	geranyltranstransferase activity
FOC82_00625	COG1469	GTP cyclohydrolase I activity
FOC82_00630	COG3739	integral membrane protein
FOC82_00635	COG0360	Binds together with S18 to 16S ribosomal RNA
FOC82_00640	COG2965	DNA replication, synthesis of RNA primer
FOC82_00645	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FOC82_00650	COG0359	binds to the 23S rRNA
FOC82_00660	COG0305	Participates in initiation and elongation during chromosome replication
FOC82_00670	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FOC82_00705	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_00755	COG0540	Belongs to the ATCase OTCase family
FOC82_00780	COG0642	Histidine kinase
FOC82_00790	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FOC82_00795	COG2137	regulation of response to DNA damage stimulus
FOC82_00810	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FOC82_00825	COG0045	succinate-CoA ligase (ADP-forming) activity
FOC82_00830	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FOC82_00835	COG0861	Integral membrane protein TerC family
FOC82_00840	COG0861	Integral membrane protein TerC family
FOC82_00845	COG0181	hydroxymethylbilane synthase activity
FOC82_00880	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FOC82_00885	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FOC82_00895	COG0436	Aminotransferase
FOC82_00915	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
FOC82_00920	COG0308	aminopeptidase N
FOC82_00935	COG0312	modulator of DNA gyrase
FOC82_00940	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FOC82_00945	COG0277	FAD linked oxidase domain protein
FOC82_00950	COG0277	FAD linked oxidase domain protein
FOC82_00955	COG0277	FAD linked oxidase domain protein
FOC82_00960	COG0247	lactate metabolic process
FOC82_00990	COG0583	DNA-binding transcription factor activity
FOC82_00995	COG0482	sulfurtransferase activity
FOC82_01000	COG0730	response to heat
FOC82_01005	COG0625	glutathione transferase activity
FOC82_01015	COG3909	cytochrome
FOC82_01100	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
FOC82_01110	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC82_01115	COG0069	glutamate synthase activity
FOC82_01120	COG2391	methyltransferase activity
FOC82_01125	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FOC82_01160	COG0557	exoribonuclease II activity
FOC82_01165	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FOC82_01170	COG0626	cystathionine gamma-synthase activity
FOC82_01175	COG3128	pkhd-type hydroxylase
FOC82_01180	COG0776	regulation of translation
FOC82_01205	COG0745	RESPONSE REGULATOR receiver
FOC82_01210	COG0642	Histidine kinase
FOC82_01215	COG3158	transport of potassium into the cell
FOC82_01220	COG0137	argininosuccinate synthase activity
FOC82_01230	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FOC82_01235	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC82_01245	COG5002	protein histidine kinase activity
FOC82_01280	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FOC82_01285	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FOC82_01305	COG0747	negative chemotaxis
FOC82_01315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_01325	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
FOC82_01330	COG0444	Belongs to the ABC transporter superfamily
FOC82_01335	COG4608	Belongs to the ABC transporter superfamily
FOC82_01350	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FOC82_01355	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
FOC82_01365	COG3642	lipopolysaccharide core region biosynthetic process
FOC82_01375	COG3842	ATPase activity
FOC82_01380	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC82_01385	COG1177	transmembrane transport
FOC82_01415	COG1960	acyl-CoA dehydrogenase activity
FOC82_01420	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
FOC82_01425	COG0704	Plays a role in the regulation of phosphate uptake
FOC82_01435	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
FOC82_01440	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FOC82_01440	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
FOC82_01445	COG1643	Atp-dependent helicase
FOC82_01450	COG0395	ABC-type sugar transport system, permease component
FOC82_01455	COG1116	anion transmembrane transporter activity
FOC82_01470	COG0438	transferase activity, transferring glycosyl groups
FOC82_01475	COG0726	polysaccharide deacetylase
FOC82_01490	COG0726	polysaccharide deacetylase
FOC82_01500	COG0124	histidyl-tRNA synthetase
FOC82_01520	COG1132	(ABC) transporter
FOC82_01525	COG0475	glutathione-regulated potassium exporter activity
FOC82_01525	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FOC82_01540	COG1530	ribonuclease E activity
FOC82_01570	COG2204	response regulator
FOC82_01575	COG4191	Histidine kinase
FOC82_01580	COG1301	dicarboxylic acid transport
FOC82_01585	COG0424	maF-like protein
FOC82_01590	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
FOC82_01595	COG0799	negative regulation of ribosome biogenesis
FOC82_01600	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
FOC82_01610	COG0151	Belongs to the GarS family
FOC82_01615	COG0217	transcriptional regulatory protein
FOC82_01620	COG0433	COG0433 Predicted ATPase
FOC82_01625	COG0473	3-isopropylmalate dehydrogenase activity
FOC82_01635	COG2814	Major facilitator Superfamily
FOC82_01640	COG1566	PFAM secretion protein HlyD family protein
FOC82_01650	COG1846	Transcriptional regulator
FOC82_01680	COG3391	amine dehydrogenase activity
FOC82_01690	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FOC82_01710	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FOC82_01715	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
FOC82_01725	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FOC82_01750	COG2311	Membrane
FOC82_01760	COG2358	TRAP transporter, solute receptor (TAXI family
FOC82_01765	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC82_01790	COG0662	Cupin 2, conserved barrel domain protein
FOC82_01795	COG5285	phytanoyl-CoA dioxygenase
FOC82_01800	COG3217	Mosc domain protein beta barrel domain protein
FOC82_01800	COG0633	Ferredoxin
FOC82_01805	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
FOC82_01815	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_01865	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FOC82_01870	COG0425	Belongs to the sulfur carrier protein TusA family
FOC82_01880	COG0228	four-way junction DNA binding
FOC82_01885	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
FOC82_01890	COG0336	Belongs to the RNA methyltransferase TrmD family
FOC82_01895	COG1396	sequence-specific DNA binding
FOC82_01900	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_01905	COG0765	amino acid transport
FOC82_01915	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_01920	COG0525	valine-tRNA ligase activity
FOC82_01925	COG0105	UTP biosynthetic process
FOC82_01930	COG0820	rRNA (adenine-C2-)-methyltransferase activity
FOC82_01945	COG0124	histidyl-tRNA synthetase
FOC82_01950	COG2976	Protein conserved in bacteria
FOC82_01955	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FOC82_01960	COG1160	GTP binding
FOC82_01965	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FOC82_01970	COG1923	regulation of RNA biosynthetic process
FOC82_01975	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FOC82_01980	COG0330	HflC and HflK could
FOC82_01985	COG0330	HflC and HflK could
FOC82_01990	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
FOC82_01995	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
FOC82_02000	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
FOC82_02005	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FOC82_02065	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC82_02070	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FOC82_02075	COG0439	Biotin carboxylase
FOC82_02090	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_02095	COG2030	dehydratase
FOC82_02130	COG4964	Belongs to the GSP D family
FOC82_02160	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FOC82_02170	COG1295	ribonuclease BN
FOC82_02180	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
FOC82_02190	COG2205	protein histidine kinase activity
FOC82_02205	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
FOC82_02210	COG4783	chaperone-mediated protein folding
FOC82_02235	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FOC82_02250	COG1538	Outer membrane efflux protein
FOC82_02270	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FOC82_02280	COG0101	tRNA pseudouridine synthase activity
FOC82_02285	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FOC82_02290	COG0135	phosphoribosylanthranilate isomerase activity
FOC82_02300	COG1278	Cold shock
FOC82_02360	COG0129	dihydroxy-acid dehydratase activity
FOC82_02370	COG4172	Belongs to the ABC transporter superfamily
FOC82_02375	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_02380	COG0601	transmembrane transport
FOC82_02400	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FOC82_02405	COG2197	response regulator
FOC82_02415	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FOC82_02420	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
FOC82_02435	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC82_02440	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
FOC82_02445	COG0004	ammonium transporteR
FOC82_02450	COG0347	Belongs to the P(II) protein family
FOC82_02455	COG0640	Transcriptional regulator
FOC82_02475	COG2960	long-chain fatty acid transporting porin activity
FOC82_02480	COG0606	chelatase, subunit chli
FOC82_02485	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FOC82_02490	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FOC82_02495	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
FOC82_02500	COG0072	phenylalanine-tRNA ligase activity
FOC82_02500	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC82_02505	COG0776	regulation of translation
FOC82_02550	COG5002	protein histidine kinase activity
FOC82_02580	COG4638	Rieske (2fe-2S)
FOC82_02585	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
FOC82_02610	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC82_02615	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_02620	COG0384	phenazine biosynthesis protein PhzF
FOC82_02625	COG0456	acetyltransferase
FOC82_02635	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_02660	COG1522	sequence-specific DNA binding
FOC82_02700	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_02730	COG5265	(ABC) transporter
FOC82_02735	COG0656	L-ascorbic acid biosynthetic process
FOC82_02750	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FOC82_02760	COG4977	sequence-specific DNA binding
FOC82_02760	COG1917	Cupin 2, conserved barrel domain protein
FOC82_02765	COG2223	nitrite transmembrane transporter activity
FOC82_02770	COG3658	cytochrome
FOC82_02775	COG1215	transferase activity, transferring glycosyl groups
FOC82_02780	COG0726	polysaccharide deacetylase
FOC82_02780	COG1649	PFAM Uncharacterised BCR, COG1649
FOC82_02785	COG0457	Tetratricopeptide repeat
FOC82_02800	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_02830	COG1610	YqeY-like protein
FOC82_02840	COG1959	2 iron, 2 sulfur cluster binding
FOC82_02845	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_02850	COG0697	spore germination
FOC82_02855	COG0506	proline dehydrogenase activity
FOC82_02885	COG3246	L-lysine catabolic process to acetate
FOC82_02890	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_02910	COG0625	glutathione transferase activity
FOC82_02925	COG2814	Major facilitator Superfamily
FOC82_02930	COG1960	acyl-CoA dehydrogenase activity
FOC82_02935	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_02965	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FOC82_02975	COG3245	cytochrome
FOC82_02980	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
FOC82_02985	COG1280	lysine exporter protein (LysE YggA)
FOC82_03000	COG1280	lysine exporter protein (LysE YggA)
FOC82_03025	COG0697	spore germination
FOC82_03040	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FOC82_03045	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03055	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC82_03060	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
FOC82_03070	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
FOC82_03075	COG1137	ATPase activity
FOC82_03105	COG2188	Transcriptional regulator
FOC82_03115	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_03130	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03140	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC82_03180	COG1064	alcohol dehydrogenase
FOC82_03235	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC82_03245	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
FOC82_03265	COG4133	protoheme IX ABC transporter activity
FOC82_03270	COG3005	denitrification pathway
FOC82_03275	COG3043	anaerobic respiration
FOC82_03295	COG3246	L-lysine catabolic process to acetate
FOC82_03300	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_03305	COG0583	DNA-binding transcription factor activity
FOC82_03310	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FOC82_03325	COG0753	catalase activity
FOC82_03340	COG2382	esterase
FOC82_03375	COG1429	ligase activity, forming nitrogen-metal bonds
FOC82_03390	COG4771	TonB-dependent receptor
FOC82_03400	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_03415	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FOC82_03425	COG0765	amino acid transport
FOC82_03430	COG0765	amino acid transport
FOC82_03435	COG1126	abc transporter atp-binding protein
FOC82_03450	COG0129	dihydroxy-acid dehydratase activity
FOC82_03455	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_03460	COG5001	Diguanylate cyclase
FOC82_03465	COG1024	Enoyl-CoA hydratase
FOC82_03470	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03475	COG0583	DNA-binding transcription factor activity
FOC82_03480	COG2610	gluconate transmembrane transporter activity
FOC82_03490	COG2223	nitrite transmembrane transporter activity
FOC82_03500	COG0583	DNA-binding transcription factor activity
FOC82_03505	COG1051	belongs to the nudix hydrolase family
FOC82_03515	COG0235	Class ii aldolase
FOC82_03520	COG0477	Major facilitator Superfamily
FOC82_03535	COG2188	Transcriptional regulator
FOC82_03540	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_03555	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03575	COG1280	lysine exporter protein (LysE YggA)
FOC82_03580	COG5265	(ABC) transporter
FOC82_03585	COG1802	Transcriptional regulator
FOC82_03595	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FOC82_03615	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03670	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03680	COG0109	protoheme IX farnesyltransferase activity
FOC82_03685	COG0583	DNA-binding transcription factor activity
FOC82_03700	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FOC82_03705	COG4977	sequence-specific DNA binding
FOC82_03710	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03715	COG0697	spore germination
FOC82_03720	COG0820	rRNA (adenine-C2-)-methyltransferase activity
FOC82_03730	COG0387	Pfam Sodium calcium exchanger
FOC82_03735	COG3706	GGDEF domain
FOC82_03740	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03750	COG1309	transcriptional regulator
FOC82_03805	COG0583	DNA-binding transcription factor activity
FOC82_03810	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_03815	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_03825	COG2186	Transcriptional regulator
FOC82_03830	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_03880	COG2814	Major facilitator Superfamily
FOC82_03940	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_03945	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FOC82_03950	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC82_03960	COG0559	Belongs to the binding-protein-dependent transport system permease family
FOC82_03970	COG0411	ABC transporter
FOC82_03985	COG1609	Transcriptional regulator
FOC82_03995	COG0560	Phosphoserine phosphatase
FOC82_04000	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FOC82_04025	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_04030	COG2186	Transcriptional regulator
FOC82_04040	COG0307	riboflavin synthase, alpha
FOC82_04055	COG2271	Major facilitator Superfamily
FOC82_04065	COG0840	transmembrane signaling receptor activity
FOC82_04085	COG0789	Transcriptional regulator
FOC82_04105	COG3842	ATPase activity
FOC82_04110	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC82_04125	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_04130	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_04135	COG0154	amidase activity
FOC82_04145	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_04155	COG1309	transcriptional regulator
FOC82_04160	COG1960	acyl-CoA dehydrogenase activity
FOC82_04165	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FOC82_04170	COG0022	dehydrogenase e1 component
FOC82_04185	COG0583	DNA-binding transcription factor activity
FOC82_04190	COG0154	amidase activity
FOC82_04205	COG2814	Major facilitator Superfamily
FOC82_04210	COG0583	DNA-binding transcription factor activity
FOC82_04215	COG0165	Argininosuccinate lyase
FOC82_04220	COG0668	transmembrane transport
FOC82_04310	COG0583	DNA-binding transcription factor activity
FOC82_04320	COG0747	negative chemotaxis
FOC82_04325	COG0601	transmembrane transport
FOC82_04335	COG4172	Belongs to the ABC transporter superfamily
FOC82_04345	COG4681	YaeQ
FOC82_04380	COG2188	Transcriptional regulator
FOC82_04410	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FOC82_04415	COG0066	3-isopropylmalate dehydratase activity
FOC82_04430	COG1335	isochorismatase
FOC82_04455	COG3161	chorismate lyase activity
FOC82_04460	COG1187	pseudouridine synthase activity
FOC82_04490	COG1999	signal sequence binding
FOC82_04495	COG0339	signal peptide processing
FOC82_04500	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FOC82_04505	COG4566	intracellular signal transduction
FOC82_04520	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC82_04525	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC82_04550	COG1191	sigma factor activity
FOC82_04570	COG1360	Flagellar Motor Protein
FOC82_04575	COG0745	RESPONSE REGULATOR receiver
FOC82_04585	COG0835	chemotaxis
FOC82_04590	COG0840	transmembrane signaling receptor activity
FOC82_04595	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FOC82_04600	COG2201	protein-glutamate methylesterase activity
FOC82_04605	COG0745	RESPONSE REGULATOR receiver
FOC82_04610	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
FOC82_04615	COG0840	transmembrane signaling receptor activity
FOC82_04625	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FOC82_04640	COG2747	anti-sigma28 factor FlgM
FOC82_04650	COG1815	bacterial-type flagellum-dependent cell motility
FOC82_04655	COG1558	bacterial-type flagellum-dependent cell motility
FOC82_04670	COG4787	bacterial-type flagellum-dependent cell motility
FOC82_04695	COG1256	bacterial-type flagellum assembly
FOC82_04705	COG0840	transmembrane signaling receptor activity
FOC82_04710	COG0840	transmembrane signaling receptor activity
FOC82_04725	COG0840	transmembrane signaling receptor activity
FOC82_04750	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC82_04760	COG1580	Controls the rotational direction of flagella during chemotaxis
FOC82_04775	COG1157	protein secretion by the type III secretion system
FOC82_04780	COG1317	bacterial-type flagellum organization
FOC82_04785	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC82_04795	COG1677	Flagellar hook-basal body complex protein FliE
FOC82_04805	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FOC82_04830	COG1334	flagellar protein FlaG
FOC82_04845	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_04850	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_04860	COG0285	dihydrofolate synthase activity
FOC82_04870	COG1286	toxin biosynthetic process
FOC82_04890	COG1451	nucleotide metabolic process
FOC82_04900	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FOC82_04910	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
FOC82_04915	COG0024	Methionine aminopeptidase
FOC82_04920	COG0052	Belongs to the universal ribosomal protein uS2 family
FOC82_04925	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
FOC82_04930	COG0528	UMP kinase activity
FOC82_04935	COG0233	cytoplasmic translational termination
FOC82_04940	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FOC82_04945	COG0575	Belongs to the CDS family
FOC82_04950	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
FOC82_04955	COG0750	zinc metalloprotease
FOC82_04960	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FOC82_04965	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
FOC82_04970	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FOC82_04975	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FOC82_04990	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FOC82_04995	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FOC82_05020	COG2169	Transcriptional regulator
FOC82_05020	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FOC82_05025	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FOC82_05025	COG0519	Catalyzes the synthesis of GMP from XMP
FOC82_05035	COG0330	HflC and HflK could
FOC82_05045	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
FOC82_05050	COG2867	negative regulation of translational initiation
FOC82_05055	COG2914	Belongs to the UPF0125 (RnfH) family
FOC82_05060	COG1960	acyl-CoA dehydrogenase activity
FOC82_05065	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_05065	COG1024	Enoyl-CoA hydratase
FOC82_05090	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FOC82_05095	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FOC82_05100	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FOC82_05105	COG0084	hydrolase, TatD family'
FOC82_05120	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FOC82_05130	COG1024	Enoyl-CoA hydratase
FOC82_05135	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_05155	COG1137	ATPase activity
FOC82_05165	COG0154	amidase activity
FOC82_05175	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_05185	COG1126	abc transporter atp-binding protein
FOC82_05190	COG0010	Belongs to the arginase family
FOC82_05195	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FOC82_05200	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FOC82_05210	COG0095	Lipoate-protein ligase
FOC82_05225	COG0625	glutathione transferase activity
FOC82_05235	COG1522	sequence-specific DNA binding
FOC82_05240	COG0386	Belongs to the glutathione peroxidase family
FOC82_05245	COG2814	Major facilitator Superfamily
FOC82_05255	COG2814	Major facilitator Superfamily
FOC82_05265	COG2207	Transcriptional regulator
FOC82_05290	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_05315	COG0513	Belongs to the DEAD box helicase family
FOC82_05320	COG1414	Transcriptional regulator
FOC82_05335	COG0747	negative chemotaxis
FOC82_05340	COG0601	transmembrane transport
FOC82_05345	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_05360	COG1228	amidohydrolase
FOC82_05375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_05385	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_05390	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FOC82_05395	COG4521	taurine ABC transporter
FOC82_05415	COG1966	Carbon starvation protein
FOC82_05420	COG2879	small protein
FOC82_05430	COG0783	Belongs to the Dps family
FOC82_05440	COG0583	DNA-binding transcription factor activity
FOC82_05455	COG0559	Belongs to the binding-protein-dependent transport system permease family
FOC82_05470	COG0410	ABC transporter
FOC82_05475	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FOC82_05485	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC82_05490	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC82_05500	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FOC82_05505	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
FOC82_05510	COG0745	RESPONSE REGULATOR receiver
FOC82_05515	COG2205	protein histidine kinase activity
FOC82_05520	COG3848	Pyruvate phosphate dikinase
FOC82_05520	COG0574	Belongs to the PEP-utilizing enzyme family
FOC82_05530	COG2070	2-Nitropropane dioxygenase
FOC82_05545	COG1328	CTP reductase activity
FOC82_05585	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC82_05655	COG2223	nitrite transmembrane transporter activity
FOC82_05660	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
FOC82_05665	COG1140	nitrate reductase beta subunit
FOC82_05670	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
FOC82_05675	COG2181	nitrate reductase activity
FOC82_05680	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC82_05685	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FOC82_05690	COG0288	reversible hydration of carbon dioxide
FOC82_05695	COG1763	Mo-molybdopterin cofactor biosynthetic process
FOC82_05700	COG3850	Histidine kinase
FOC82_05705	COG2197	response regulator
FOC82_05710	COG0826	peptidase U32
FOC82_05715	COG0826	peptidase U32
FOC82_05720	COG3154	lipid carrier protein
FOC82_05725	COG4597	amino acid ABC transporter
FOC82_05730	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_05735	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FOC82_05765	COG1116	anion transmembrane transporter activity
FOC82_05770	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC82_05775	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_05795	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC82_05810	COG4948	Mandelate Racemase Muconate Lactonizing
FOC82_05820	COG1595	DNA-templated transcription, initiation
FOC82_05830	COG0583	DNA-binding transcription factor activity
FOC82_05835	COG1764	response to oxidative stress
FOC82_05855	COG4774	siderophore transport
FOC82_05890	COG0436	Aminotransferase
FOC82_05895	COG0765	amino acid transport
FOC82_05925	COG0583	DNA-binding transcription factor activity
FOC82_05945	COG0583	DNA-binding transcription factor activity
FOC82_05955	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_05960	COG1024	Enoyl-CoA hydratase
FOC82_05965	COG1960	acyl-CoA dehydrogenase activity
FOC82_05970	COG4566	intracellular signal transduction
FOC82_06000	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
FOC82_06005	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC82_06010	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC82_06020	COG1126	abc transporter atp-binding protein
FOC82_06025	COG0010	Belongs to the arginase family
FOC82_06030	COG0765	amino acid transport
FOC82_06055	COG0765	amino acid transport
FOC82_06060	COG1126	abc transporter atp-binding protein
FOC82_06065	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FOC82_06070	COG0390	transport system, permease component
FOC82_06100	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FOC82_06115	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_06125	COG0583	DNA-binding transcription factor activity
FOC82_06145	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_06155	COG0028	Belongs to the TPP enzyme family
FOC82_06175	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FOC82_06185	COG4608	Belongs to the ABC transporter superfamily
FOC82_06190	COG0444	Belongs to the ABC transporter superfamily
FOC82_06195	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_06205	COG0747	negative chemotaxis
FOC82_06220	COG0583	DNA-binding transcription factor activity
FOC82_06230	COG2271	Major facilitator Superfamily
FOC82_06290	COG1335	isochorismatase
FOC82_06295	COG2353	YceI-like domain
FOC82_06300	COG0583	DNA-binding transcription factor activity
FOC82_06310	COG0477	Major facilitator Superfamily
FOC82_06315	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_06340	COG1414	Transcriptional regulator
FOC82_06345	COG0277	FAD linked oxidase domain protein
FOC82_06360	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FOC82_06395	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC82_06410	COG0583	DNA-binding transcription factor activity
FOC82_06420	COG3284	Transcriptional regulator
FOC82_06430	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC82_06450	COG0798	PFAM Bile acid sodium symporter
FOC82_06460	COG0431	NADPH-dependent FMN reductase
FOC82_06465	COG0698	ribose 5-phosphate isomerase
FOC82_06480	COG1937	Protein conserved in bacteria
FOC82_06505	COG0625	glutathione transferase activity
FOC82_06515	COG1414	Transcriptional regulator
FOC82_06520	COG1024	Enoyl-CoA hydratase
FOC82_06525	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_06535	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC82_06585	COG1959	2 iron, 2 sulfur cluster binding
FOC82_06590	COG1960	acyl-CoA dehydrogenase activity
FOC82_06640	COG0583	DNA-binding transcription factor activity
FOC82_06655	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC82_06670	COG1522	sequence-specific DNA binding
FOC82_06690	COG0628	permease
FOC82_06700	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
FOC82_06755	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FOC82_06765	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FOC82_06780	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
FOC82_06790	COG1253	flavin adenine dinucleotide binding
FOC82_06805	COG4172	Belongs to the ABC transporter superfamily
FOC82_06810	COG3568	Endonuclease Exonuclease Phosphatase
FOC82_06815	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC82_06820	COG0392	lysyltransferase activity
FOC82_06840	COG0028	Belongs to the TPP enzyme family
FOC82_06845	COG0297	glycogen (starch) synthase activity
FOC82_06850	COG0366	Alpha amylase catalytic
FOC82_06855	COG0366	Alpha amylase catalytic
FOC82_06860	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
FOC82_06870	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
FOC82_06885	COG3300	MHYT domain
FOC82_06885	COG5001	Diguanylate cyclase
FOC82_06900	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC82_06935	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
FOC82_06945	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_06980	COG2204	response regulator
FOC82_06985	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FOC82_07005	COG2814	Major facilitator Superfamily
FOC82_07020	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FOC82_07025	COG2199	diguanylate cyclase activity
FOC82_07025	COG2200	EAL domain
FOC82_07025	COG2203	Gaf domain
FOC82_07030	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FOC82_07035	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_07065	COG0488	(ABC) transporter
FOC82_07080	COG0688	phosphatidylethanolamine metabolic process
FOC82_07090	COG1408	metallophosphoesterase
FOC82_07110	COG1464	Belongs to the NlpA lipoprotein family
FOC82_07115	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FOC82_07120	COG0010	Belongs to the arginase family
FOC82_07150	COG2363	Small membrane protein
FOC82_07155	COG0697	spore germination
FOC82_07165	COG2133	pyrroloquinoline quinone binding
FOC82_07170	COG0625	glutathione transferase activity
FOC82_07185	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
FOC82_07190	COG1794	racemase activity, acting on amino acids and derivatives
FOC82_07210	COG0559	Belongs to the binding-protein-dependent transport system permease family
FOC82_07220	COG0583	DNA-binding transcription factor activity
FOC82_07225	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_07240	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FOC82_07250	COG1653	transport
FOC82_07255	COG1175	transmembrane transport
FOC82_07260	COG0395	ABC-type sugar transport system, permease component
FOC82_07265	COG3842	ATPase activity
FOC82_07275	COG2205	protein histidine kinase activity
FOC82_07280	COG0745	RESPONSE REGULATOR receiver
FOC82_07295	COG3321	synthase
FOC82_07295	COG0604	alcohol dehydrogenase
FOC82_07295	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_07300	COG0156	8-amino-7-oxononanoate synthase activity
FOC82_07310	COG0300	oxidoreductase activity
FOC82_07325	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FOC82_07335	COG0438	transferase activity, transferring glycosyl groups
FOC82_07355	COG0463	Glycosyl transferase, family 2
FOC82_07370	COG0783	Belongs to the Dps family
FOC82_07375	COG0583	DNA-binding transcription factor activity
FOC82_07380	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FOC82_07415	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_07420	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_07425	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_07440	COG1840	ABC-type Fe3 transport system, periplasmic component
FOC82_07450	COG3842	ATPase activity
FOC82_07455	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_07460	COG1741	Belongs to the pirin family
FOC82_07465	COG1741	Belongs to the pirin family
FOC82_07470	COG0583	DNA-binding transcription factor activity
FOC82_07475	COG2204	response regulator
FOC82_07485	COG0174	glutamine synthetase
FOC82_07490	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FOC82_07495	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
FOC82_07510	COG1960	acyl-CoA dehydrogenase activity
FOC82_07525	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FOC82_07530	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_07555	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_07560	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
FOC82_07565	COG1561	YicC-like family, N-terminal region
FOC82_07595	COG0833	amino acid
FOC82_07600	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FOC82_07605	COG0791	NLP P60 protein
FOC82_07610	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_07615	COG2863	cytochrome
FOC82_07620	COG3258	Cytochrome c
FOC82_07625	COG0194	GDP metabolic process
FOC82_07630	COG1758	RNA polymerase activity
FOC82_07635	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FOC82_07640	COG1126	abc transporter atp-binding protein
FOC82_07645	COG0765	amino acid transport
FOC82_07650	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_07695	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FOC82_07725	COG4336	lyase activity
FOC82_07730	COG0583	DNA-binding transcription factor activity
FOC82_07745	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FOC82_07760	COG0583	DNA-binding transcription factor activity
FOC82_07770	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FOC82_07780	COG0560	Phosphoserine phosphatase
FOC82_07785	COG0583	DNA-binding transcription factor activity
FOC82_07790	COG3842	ATPase activity
FOC82_07795	COG1178	ABC-type Fe3 transport system permease component
FOC82_07805	COG4181	ATPase activity
FOC82_07815	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC82_07825	COG0584	glycerophosphoryl diester phosphodiesterase
FOC82_07830	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FOC82_07840	COG0678	peroxiredoxin activity
FOC82_07840	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FOC82_07850	COG0789	Transcriptional regulator
FOC82_07855	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FOC82_07890	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FOC82_07895	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
FOC82_07900	COG2252	PERMEase
FOC82_07905	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FOC82_07910	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC82_07945	COG0488	(ABC) transporter
FOC82_07950	COG0604	alcohol dehydrogenase
FOC82_07960	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_07965	COG0583	DNA-binding transcription factor activity
FOC82_07970	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC82_07975	COG0590	tRNA wobble adenosine to inosine editing
FOC82_07995	COG2212	antiporter activity
FOC82_08000	COG1863	multisubunit Na H antiporter MnhE subunit
FOC82_08005	COG0651	ATP synthesis coupled electron transport
FOC82_08010	COG1006	Multisubunit Na H antiporter MnhC subunit
FOC82_08015	COG2111	Na H antiporter
FOC82_08015	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FOC82_08045	COG0420	3'-5' exonuclease activity
FOC82_08050	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_08080	COG1960	acyl-CoA dehydrogenase activity
FOC82_08085	COG3387	PFAM Glycoside hydrolase 15-related
FOC82_08095	COG3634	alkyl hydroperoxide reductase activity
FOC82_08110	COG0395	ABC-type sugar transport system, permease component
FOC82_08120	COG3842	ATPase activity
FOC82_08125	COG3842	ATPase activity
FOC82_08150	COG2130	NADP-dependent
FOC82_08155	COG1309	transcriptional regulator
FOC82_08165	COG1131	(ABC) transporter
FOC82_08170	COG0842	Transport permease protein
FOC82_08215	COG1902	pentaerythritol trinitrate reductase activity
FOC82_08225	COG0154	amidase activity
FOC82_08230	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_08235	COG0583	DNA-binding transcription factor activity
FOC82_08250	COG0602	queuosine metabolic process
FOC82_08255	COG0720	synthase
FOC82_08275	COG1566	PFAM secretion protein HlyD family protein
FOC82_08295	COG0411	ABC transporter
FOC82_08305	COG0154	amidase activity
FOC82_08315	COG0251	oxidation-reduction process
FOC82_08320	COG0251	oxidation-reduction process
FOC82_08325	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_08335	COG0400	carboxylic ester hydrolase activity
FOC82_08340	COG0833	amino acid
FOC82_08355	COG0587	DNA-directed DNA polymerase activity
FOC82_08370	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC82_08375	COG2271	Major facilitator Superfamily
FOC82_08390	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FOC82_08410	COG1126	abc transporter atp-binding protein
FOC82_08415	COG0765	amino acid transport
FOC82_08420	COG0765	amino acid transport
FOC82_08425	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_08435	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC82_08445	COG4774	siderophore transport
FOC82_08465	COG2267	carboxylic ester hydrolase activity
FOC82_08475	COG0583	DNA-binding transcription factor activity
FOC82_08495	COG1595	DNA-templated transcription, initiation
FOC82_08505	COG4771	TonB-dependent receptor
FOC82_08510	COG2264	protein methyltransferase activity
FOC82_08520	COG3045	CreA protein
FOC82_08530	COG3712	iron ion homeostasis
FOC82_08600	COG2764	glyoxalase bleomycin resistance protein dioxygenase
FOC82_08610	COG1595	DNA-templated transcription, initiation
FOC82_08625	COG1473	amidohydrolase
FOC82_08635	COG1802	Transcriptional regulator
FOC82_08640	COG1414	Transcriptional regulator
FOC82_08650	COG0477	Major facilitator Superfamily
FOC82_08655	COG0667	Aldo Keto reductase
FOC82_08665	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FOC82_08670	COG1802	Transcriptional regulator
FOC82_08680	COG0601	transmembrane transport
FOC82_08685	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_08690	COG0444	Belongs to the ABC transporter superfamily
FOC82_08695	COG4608	Belongs to the ABC transporter superfamily
FOC82_08705	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_08710	COG3655	Transcriptional regulator
FOC82_08720	COG1309	transcriptional regulator
FOC82_08745	COG1683	Conserved Protein
FOC82_08755	COG2207	Transcriptional regulator
FOC82_08775	COG2885	chlorophyll binding
FOC82_08775	COG3047	cAMP biosynthetic process
FOC82_08820	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
FOC82_08835	COG3795	YCII-related domain
FOC82_08840	COG3795	YCII-related domain
FOC82_08850	COG4941	Belongs to the sigma-70 factor family
FOC82_08860	COG0697	spore germination
FOC82_08865	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FOC82_08875	COG0583	DNA-binding transcription factor activity
FOC82_08890	COG1846	Transcriptional regulator
FOC82_08910	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FOC82_08920	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FOC82_08945	COG0745	RESPONSE REGULATOR receiver
FOC82_08970	COG2885	chlorophyll binding
FOC82_09000	COG2032	superoxide dismutase activity
FOC82_09005	COG2733	membrane
FOC82_09015	COG0583	DNA-binding transcription factor activity
FOC82_09020	COG1024	Enoyl-CoA hydratase
FOC82_09020	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_09025	COG0183	Belongs to the thiolase family
FOC82_09030	COG1960	acyl-CoA dehydrogenase activity
FOC82_09035	COG1960	acyl-CoA dehydrogenase activity
FOC82_09040	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_09060	COG0583	DNA-binding transcription factor activity
FOC82_09085	COG1522	sequence-specific DNA binding
FOC82_09090	COG2203	Gaf domain
FOC82_09090	COG3706	GGDEF domain
FOC82_09090	COG4251	negative regulation of phosphorylation
FOC82_09090	COG5001	Diguanylate cyclase
FOC82_09095	COG2201	protein-glutamate methylesterase activity
FOC82_09115	COG0835	chemotaxis
FOC82_09120	COG0840	transmembrane signaling receptor activity
FOC82_09125	COG0154	amidase activity
FOC82_09135	COG1199	ATP-dependent helicase activity
FOC82_09180	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_09205	COG0583	DNA-binding transcription factor activity
FOC82_09220	COG0145	ligase activity
FOC82_09225	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
FOC82_09230	COG4647	ligase activity
FOC82_09235	COG3284	Transcriptional regulator
FOC82_09240	COG1063	alcohol dehydrogenase
FOC82_09255	COG3550	peptidyl-serine autophosphorylation
FOC82_09265	COG0753	catalase activity
FOC82_09280	COG1178	ABC-type Fe3 transport system permease component
FOC82_09285	COG3842	ATPase activity
FOC82_09310	COG0583	DNA-binding transcription factor activity
FOC82_09345	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_09415	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FOC82_09415	COG0519	Catalyzes the synthesis of GMP from XMP
FOC82_09480	COG2072	flavoprotein involved in K transport
FOC82_09485	COG0601	transmembrane transport
FOC82_09490	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_09495	COG0444	Belongs to the ABC transporter superfamily
FOC82_09505	COG0747	negative chemotaxis
FOC82_09540	COG1396	sequence-specific DNA binding
FOC82_09555	COG2963	transposase activity
FOC82_09585	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
FOC82_09595	COG3706	GGDEF domain
FOC82_09650	COG4692	amylo-alpha-1,6-glucosidase activity
FOC82_09655	COG0583	DNA-binding transcription factor activity
FOC82_09660	COG2271	Major facilitator Superfamily
FOC82_09670	COG0129	dihydroxy-acid dehydratase activity
FOC82_09675	COG2084	Dehydrogenase
FOC82_09685	COG3153	acetyltransferase
FOC82_09690	COG1304	FMN binding
FOC82_09695	COG3468	outer membrane autotransporter barrel domain protein
FOC82_09725	COG1335	isochorismatase
FOC82_09780	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_09810	COG3712	iron ion homeostasis
FOC82_09815	COG4774	siderophore transport
FOC82_09825	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_09845	COG0583	DNA-binding transcription factor activity
FOC82_09855	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FOC82_09855	COG0047	phosphoribosylformylglycinamidine synthase activity
FOC82_09870	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FOC82_09880	COG0613	PHP domain protein
FOC82_09890	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FOC82_09900	COG0583	DNA-binding transcription factor activity
FOC82_09905	COG2146	nitrite reductase [NAD(P)H] activity
FOC82_09905	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FOC82_09910	COG2146	nitrite reductase [NAD(P)H] activity
FOC82_09910	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FOC82_09915	COG2116	formate transmembrane transporter activity
FOC82_09920	COG2815	serine threonine protein kinase
FOC82_09920	COG0515	serine threonine protein kinase
FOC82_09930	COG3707	response regulator
FOC82_09950	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FOC82_09955	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FOC82_09965	COG1850	ribulose-bisphosphate carboxylase activity
FOC82_09975	COG3243	poly(R)-hydroxyalkanoic acid synthase
FOC82_09985	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_09995	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_10010	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FOC82_10015	COG1454	alcohol dehydrogenase
FOC82_10045	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_10050	COG0625	glutathione transferase activity
FOC82_10070	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_10075	COG2301	Belongs to the HpcH HpaI aldolase family
FOC82_10080	COG1024	Enoyl-CoA hydratase
FOC82_10085	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_10105	COG2130	NADP-dependent
FOC82_10120	COG4604	ABC transporter, ATP-binding protein
FOC82_10125	COG4605	iron ion homeostasis
FOC82_10130	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC82_10135	COG4607	ABC-type enterochelin transport system periplasmic component
FOC82_10140	COG4771	TonB-dependent receptor
FOC82_10145	COG0745	RESPONSE REGULATOR receiver
FOC82_10150	COG2205	protein histidine kinase activity
FOC82_10155	COG2814	Major facilitator Superfamily
FOC82_10165	COG4771	TonB-dependent receptor
FOC82_10170	COG0084	hydrolase, TatD family'
FOC82_10175	COG1136	(ABC) transporter
FOC82_10190	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FOC82_10195	COG2271	Major facilitator Superfamily
FOC82_10205	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_10210	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
FOC82_10220	COG1309	transcriptional regulator
FOC82_10225	COG0183	Belongs to the thiolase family
FOC82_10230	COG1022	Amp-dependent synthetase and ligase
FOC82_10260	COG1024	Enoyl-CoA hydratase
FOC82_10270	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_10285	COG1803	Methylglyoxal synthase
FOC82_10290	COG2975	iron-sulfur cluster assembly
FOC82_10300	COG0443	Heat shock 70 kDa protein
FOC82_10305	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
FOC82_10310	COG0316	Belongs to the HesB IscA family
FOC82_10315	COG0822	iron-sulfur transferase activity
FOC82_10320	COG1104	cysteine desulfurase activity
FOC82_10330	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FOC82_10335	COG0556	nucleotide-excision repair
FOC82_10355	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_10360	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_10365	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FOC82_10370	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FOC82_10375	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
FOC82_10380	COG0740	serine-type endopeptidase activity
FOC82_10385	COG0544	peptidyl-prolyl cis-trans isomerase activity
FOC82_10390	COG0501	Belongs to the peptidase M48B family
FOC82_10400	COG1278	Cold shock
FOC82_10410	COG1278	Cold shock
FOC82_10440	COG0251	oxidation-reduction process
FOC82_10450	COG0583	DNA-binding transcription factor activity
FOC82_10485	COG3008	intermembrane lipid transfer
FOC82_10495	COG2877	3-deoxy-8-phosphooctulonate synthase activity
FOC82_10500	COG3038	cytochrome b561
FOC82_10520	COG0277	FAD linked oxidase domain protein
FOC82_10525	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FOC82_10530	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
FOC82_10535	COG2271	Major facilitator Superfamily
FOC82_10565	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC82_10570	COG4942	peptidase
FOC82_10580	COG0436	Aminotransferase
FOC82_10585	COG2171	N-acyltransferase activity
FOC82_10595	COG2890	protein-(glutamine-N5) methyltransferase activity
FOC82_10600	COG0488	(ABC) transporter
FOC82_10610	COG0210	DNA helicase
FOC82_10625	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FOC82_10625	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FOC82_10630	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FOC82_10635	COG0196	riboflavin kinase activity
FOC82_10650	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
FOC82_10655	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
FOC82_10660	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FOC82_10695	COG2197	response regulator
FOC82_10700	COG2831	hemolysin activation secretion protein
FOC82_10720	COG3188	usher protein
FOC82_10725	COG3121	Chaperone
FOC82_10740	COG0586	Pfam SNARE associated Golgi protein
FOC82_10755	COG0583	DNA-binding transcription factor activity
FOC82_10770	COG1902	pentaerythritol trinitrate reductase activity
FOC82_10775	COG1126	abc transporter atp-binding protein
FOC82_10780	COG0765	amino acid transport
FOC82_10785	COG0765	amino acid transport
FOC82_10790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_10800	COG1764	response to oxidative stress
FOC82_10805	COG1914	H( )-stimulated, divalent metal cation uptake system
FOC82_10815	COG0640	Transcriptional regulator
FOC82_10835	COG2271	Major facilitator Superfamily
FOC82_10840	COG1802	Transcriptional regulator
FOC82_10850	COG1024	Enoyl-CoA hydratase
FOC82_10855	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_10875	COG0559	Belongs to the binding-protein-dependent transport system permease family
FOC82_10885	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FOC82_10885	COG0506	proline dehydrogenase activity
FOC82_10885	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
FOC82_10895	COG3008	intermembrane lipid transfer
FOC82_10900	COG2995	paraquat-inducible protein a
FOC82_10910	COG4953	penicillin-binding protein 1C
FOC82_10915	COG2373	Large extracellular alpha-helical protein
FOC82_10920	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
FOC82_10925	COG1278	Cold shock
FOC82_10935	COG0183	Belongs to the thiolase family
FOC82_10940	COG0038	chloride channel
FOC82_10950	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FOC82_10955	COG1570	exodeoxyribonuclease VII activity
FOC82_10960	COG0811	peptide transport
FOC82_10970	COG1663	tetraacyldisaccharide 4'-kinase activity
FOC82_10980	COG2835	tetraacyldisaccharide 4'-kinase activity
FOC82_10985	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
FOC82_10990	COG0563	adenylate kinase activity
FOC82_11000	COG0728	peptidoglycan biosynthetic process
FOC82_11010	COG0268	Binds directly to 16S ribosomal RNA
FOC82_11015	COG0583	DNA-binding transcription factor activity
FOC82_11045	COG2186	Transcriptional regulator
FOC82_11055	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_11060	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_11065	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC82_11095	COG3384	dioxygenase
FOC82_11100	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_11105	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC82_11115	COG3971	2-oxopent-4-enoate hydratase activity
FOC82_11125	COG1942	4-Oxalocrotonate Tautomerase
FOC82_11130	COG0583	DNA-binding transcription factor activity
FOC82_11135	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_11140	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FOC82_11150	COG1562	ergosterol biosynthetic process
FOC82_11160	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
FOC82_11185	COG1477	protein flavinylation
FOC82_11200	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
FOC82_11205	COG0583	DNA-binding transcription factor activity
FOC82_11215	COG5564	TIM-barrel signal transduction protein
FOC82_11220	COG5441	Belongs to the UPF0261 family
FOC82_11255	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_11260	COG3485	protocatechuate 3,4-dioxygenase
FOC82_11270	COG1802	Transcriptional regulator
FOC82_11275	COG0235	Class ii aldolase
FOC82_11280	COG0747	negative chemotaxis
FOC82_11290	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_11295	COG4172	Belongs to the ABC transporter superfamily
FOC82_11300	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FOC82_11305	COG0542	response to heat
FOC82_11315	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FOC82_11325	COG0477	Major facilitator Superfamily
FOC82_11355	COG0494	nUDIX hydrolase
FOC82_11360	COG0443	Heat shock 70 kDa protein
FOC82_11390	COG3530	Putative quorum-sensing-regulated virulence factor
FOC82_11420	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_11430	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FOC82_11440	COG1846	Transcriptional regulator
FOC82_11465	COG1522	sequence-specific DNA binding
FOC82_11485	COG0443	Heat shock 70 kDa protein
FOC82_11520	COG2963	transposase activity
FOC82_11545	COG4172	Belongs to the ABC transporter superfamily
FOC82_11560	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_11570	COG0519	Catalyzes the synthesis of GMP from XMP
FOC82_11590	COG2951	lytic endotransglycosylase activity
FOC82_11610	COG0477	Major facilitator Superfamily
FOC82_11615	COG1473	amidohydrolase
FOC82_11625	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
FOC82_11645	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_11680	COG2011	ABC-type metal ion transport system permease component
FOC82_11685	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FOC82_11710	COG1228	amidohydrolase
FOC82_11715	COG0596	Alpha beta hydrolase
FOC82_11720	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC82_11730	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
FOC82_11735	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
FOC82_11750	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_11765	COG0583	DNA-binding transcription factor activity
FOC82_11780	COG1566	PFAM secretion protein HlyD family protein
FOC82_11800	COG0861	Integral membrane protein TerC family
FOC82_11810	COG0583	DNA-binding transcription factor activity
FOC82_11820	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
FOC82_11830	COG0251	oxidation-reduction process
FOC82_11845	COG2169	Transcriptional regulator
FOC82_11870	COG1272	protein, Hemolysin III
FOC82_11895	COG0842	Transport permease protein
FOC82_11900	COG1131	(ABC) transporter
FOC82_11920	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_11930	COG2824	Alkylphosphonate utilization operon protein PhnA
FOC82_11945	COG0348	domain, Protein
FOC82_11965	COG3278	Belongs to the heme-copper respiratory oxidase family
FOC82_11985	COG0156	8-amino-7-oxononanoate synthase activity
FOC82_11995	COG4106	trans-aconitate 2-methyltransferase activity
FOC82_11995	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FOC82_12015	COG2301	Belongs to the HpcH HpaI aldolase family
FOC82_12020	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_12030	COG2224	Isocitrate lyase
FOC82_12035	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
FOC82_12035	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
FOC82_12040	COG1858	cytochrome C peroxidase
FOC82_12050	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FOC82_12065	COG0736	holo-[acyl-carrier-protein] synthase activity
FOC82_12070	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FOC82_12080	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC82_12085	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FOC82_12110	COG4149	molybdate abc transporter
FOC82_12115	COG0725	ABC transporter, periplasmic molybdate-binding protein
FOC82_12120	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
FOC82_12145	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
FOC82_12155	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_12160	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FOC82_12165	COG4120	Belongs to the binding-protein-dependent transport system permease family
FOC82_12175	COG0667	Aldo Keto reductase
FOC82_12185	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_12190	COG1024	Enoyl-CoA hydratase
FOC82_12200	COG1802	Transcriptional regulator
FOC82_12215	COG1960	acyl-CoA dehydrogenase activity
FOC82_12230	COG1024	Enoyl-CoA hydratase
FOC82_12240	COG0183	Belongs to the thiolase family
FOC82_12260	COG0071	Belongs to the small heat shock protein (HSP20) family
FOC82_12265	COG0589	response to stress
FOC82_12270	COG0589	response to stress
FOC82_12275	COG0617	tRNA 3'-terminal CCA addition
FOC82_12275	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
FOC82_12275	COG0517	IMP dehydrogenase activity
FOC82_12290	COG2197	response regulator
FOC82_12300	COG1024	Enoyl-CoA hydratase
FOC82_12305	COG1960	acyl-CoA dehydrogenase activity
FOC82_12315	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_12325	COG4948	Mandelate Racemase Muconate Lactonizing
FOC82_12365	COG0517	IMP dehydrogenase activity
FOC82_12365	COG0516	GMP reductase activity
FOC82_12395	COG0583	DNA-binding transcription factor activity
FOC82_12400	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_12415	COG0395	ABC-type sugar transport system, permease component
FOC82_12420	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_12430	COG3842	ATPase activity
FOC82_12480	COG1802	Transcriptional regulator
FOC82_12485	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FOC82_12490	COG3384	dioxygenase
FOC82_12505	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FOC82_12515	COG4172	Belongs to the ABC transporter superfamily
FOC82_12520	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_12525	COG0601	transmembrane transport
FOC82_12545	COG0598	Magnesium transport protein CorA
FOC82_12555	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_12565	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC82_12570	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
FOC82_12580	COG1309	transcriptional regulator
FOC82_12595	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FOC82_12610	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
FOC82_12615	COG1045	serine acetyltransferase
FOC82_12620	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FOC82_12625	COG0166	Belongs to the GPI family
FOC82_12650	COG1051	belongs to the nudix hydrolase family
FOC82_12665	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
FOC82_12670	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC82_12695	COG0463	Glycosyl transferase, family 2
FOC82_12700	COG0110	maltose O-acetyltransferase activity
FOC82_12705	COG0297	glycogen (starch) synthase activity
FOC82_12710	COG2197	response regulator
FOC82_12715	COG2197	response regulator
FOC82_12730	COG1960	acyl-CoA dehydrogenase activity
FOC82_12750	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_12750	COG1024	Enoyl-CoA hydratase
FOC82_12755	COG0183	Belongs to the thiolase family
FOC82_12770	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_12775	COG4774	siderophore transport
FOC82_12785	COG3395	kinase activity
FOC82_12790	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FOC82_12800	COG2186	Transcriptional regulator
FOC82_12805	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC82_12815	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_12820	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC82_12825	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FOC82_12840	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_12845	COG1414	Transcriptional regulator
FOC82_12855	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
FOC82_12900	COG1414	Transcriptional regulator
FOC82_12925	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
FOC82_12945	COG0527	aspartate kinase activity
FOC82_12955	COG0825	malonyl-CoA metabolic process
FOC82_12965	COG0215	cysteine-tRNA ligase activity
FOC82_12980	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FOC82_12985	COG1968	undecaprenyl-diphosphatase activity
FOC82_12990	COG1253	flavin adenine dinucleotide binding
FOC82_13005	COG4263	nitrous-oxide reductase activity
FOC82_13020	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FOC82_13055	COG0668	transmembrane transport
FOC82_13095	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FOC82_13115	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC82_13140	COG1802	Transcriptional regulator
FOC82_13155	COG3360	Dodecin
FOC82_13170	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_13195	COG0583	DNA-binding transcription factor activity
FOC82_13200	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_13220	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
FOC82_13225	COG2850	peptidyl-arginine hydroxylation
FOC82_13235	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
FOC82_13240	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC82_13245	COG1994	Peptidase M50
FOC82_13250	COG0009	L-threonylcarbamoyladenylate synthase
FOC82_13255	COG2321	neutral zinc metallopeptidase
FOC82_13285	COG2808	Putative FMN-binding domain
FOC82_13300	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
FOC82_13315	COG0583	DNA-binding transcription factor activity
FOC82_13340	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FOC82_13350	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_13375	COG0784	Response regulator, receiver
FOC82_13375	COG5002	protein histidine kinase activity
FOC82_13375	COG2205	protein histidine kinase activity
FOC82_13380	COG2197	response regulator
FOC82_13390	COG3468	outer membrane autotransporter barrel domain protein
FOC82_13405	COG2203	Gaf domain
FOC82_13405	COG5001	Diguanylate cyclase
FOC82_13405	COG4251	negative regulation of phosphorylation
FOC82_13405	COG3706	GGDEF domain
FOC82_13410	COG2205	protein histidine kinase activity
FOC82_13410	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_13420	COG1304	FMN binding
FOC82_13425	COG2084	Dehydrogenase
FOC82_13445	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_13450	COG3618	amidohydrolase
FOC82_13455	COG0583	DNA-binding transcription factor activity
FOC82_13480	COG0784	Response regulator, receiver
FOC82_13480	COG4191	Histidine kinase
FOC82_13625	COG0740	serine-type endopeptidase activity
FOC82_13730	COG1278	Cold shock
FOC82_13795	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC82_13820	COG1024	Enoyl-CoA hydratase
FOC82_13850	COG1960	acyl-CoA dehydrogenase activity
FOC82_13855	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC82_13865	COG0183	Belongs to the thiolase family
FOC82_13875	COG2084	Dehydrogenase
FOC82_13895	COG1802	Transcriptional regulator
FOC82_13940	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_13950	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_13955	COG0028	Belongs to the TPP enzyme family
FOC82_13960	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_13970	COG0247	lactate metabolic process
FOC82_13985	COG1546	Belongs to the CinA family
FOC82_13985	COG1058	Belongs to the CinA family
FOC82_14005	COG0668	transmembrane transport
FOC82_14010	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FOC82_14015	COG0166	Belongs to the GPI family
FOC82_14030	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FOC82_14100	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_14115	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
FOC82_14130	COG0439	Biotin carboxylase
FOC82_14135	COG0511	ligase activity, forming carbon-carbon bonds
FOC82_14140	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
FOC82_14145	COG1984	allophanate hydrolase subunit 2
FOC82_14155	COG1802	Transcriptional regulator
FOC82_14165	COG1137	ATPase activity
FOC82_14190	COG0436	Aminotransferase
FOC82_14205	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_14215	COG3468	outer membrane autotransporter barrel domain protein
FOC82_14230	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_14235	COG0765	amino acid transport
FOC82_14255	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_14275	COG1396	sequence-specific DNA binding
FOC82_14280	COG0235	Class ii aldolase
FOC82_14290	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_14305	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
FOC82_14310	COG0038	chloride channel
FOC82_14340	COG2203	Gaf domain
FOC82_14340	COG5001	Diguanylate cyclase
FOC82_14340	COG4251	negative regulation of phosphorylation
FOC82_14340	COG3706	GGDEF domain
FOC82_14360	COG0633	Ferredoxin
FOC82_14370	COG2814	Major facilitator Superfamily
FOC82_14380	COG3608	succinylglutamate desuccinylase aspartoacylase
FOC82_14385	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FOC82_14390	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_14395	COG0183	Belongs to the thiolase family
FOC82_14405	COG1960	acyl-CoA dehydrogenase activity
FOC82_14410	COG0583	DNA-binding transcription factor activity
FOC82_14415	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_14420	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_14425	COG1024	Enoyl-CoA hydratase
FOC82_14470	COG4774	siderophore transport
FOC82_14475	COG3712	iron ion homeostasis
FOC82_14480	COG1595	DNA-templated transcription, initiation
FOC82_14495	COG0330	HflC and HflK could
FOC82_14505	COG0436	Aminotransferase
FOC82_14510	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FOC82_14515	COG1984	allophanate hydrolase subunit 2
FOC82_14520	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
FOC82_14530	COG0601	transmembrane transport
FOC82_14535	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_14545	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC82_14570	COG0439	Biotin carboxylase
FOC82_14585	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC82_14590	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_14595	COG1960	acyl-CoA dehydrogenase activity
FOC82_14610	COG2030	dehydratase
FOC82_14640	COG0583	DNA-binding transcription factor activity
FOC82_14645	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_14660	COG1942	4-Oxalocrotonate Tautomerase
FOC82_14670	COG4176	ABC-type proline glycine betaine transport system permease component
FOC82_14680	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FOC82_14685	COG2814	Major facilitator Superfamily
FOC82_14690	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FOC82_14695	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FOC82_14730	COG1686	Belongs to the peptidase S11 family
FOC82_14740	COG1846	Transcriptional regulator
FOC82_14745	COG2814	Major facilitator Superfamily
FOC82_14750	COG0495	leucyl-tRNA aminoacylation
FOC82_14765	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
FOC82_14780	COG0154	amidase activity
FOC82_14790	COG0477	Major facilitator Superfamily
FOC82_14800	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_14815	COG0583	DNA-binding transcription factor activity
FOC82_14860	COG0583	DNA-binding transcription factor activity
FOC82_14865	COG0427	acetyl-CoA hydrolase
FOC82_14870	COG0583	DNA-binding transcription factor activity
FOC82_14875	COG1511	domain protein
FOC82_14875	COG3264	Mechanosensitive ion channel
FOC82_14920	COG1840	ABC-type Fe3 transport system, periplasmic component
FOC82_14925	COG3842	ATPase activity
FOC82_14930	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC82_14935	COG1177	transmembrane transport
FOC82_14940	COG3938	Belongs to the proline racemase family
FOC82_14950	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FOC82_14955	COG3958	Transketolase
FOC82_14960	COG3959	Transketolase, thiamine diphosphate binding domain
FOC82_14965	COG1802	Transcriptional regulator
FOC82_14970	COG0371	Dehydrogenase
FOC82_14975	COG3246	L-lysine catabolic process to acetate
FOC82_14980	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_14985	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_14995	COG0559	Belongs to the binding-protein-dependent transport system permease family
FOC82_15010	COG0604	alcohol dehydrogenase
FOC82_15010	COG3321	synthase
FOC82_15010	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_15015	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_15020	COG0500	methyltransferase
FOC82_15035	COG0667	Aldo Keto reductase
FOC82_15040	COG2207	Transcriptional regulator
FOC82_15065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_15070	COG0251	oxidation-reduction process
FOC82_15075	COG3608	succinylglutamate desuccinylase aspartoacylase
FOC82_15080	COG1609	Transcriptional regulator
FOC82_15090	COG0583	DNA-binding transcription factor activity
FOC82_15095	COG1335	isochorismatase
FOC82_15100	COG1335	isochorismatase
FOC82_15110	COG2841	Protein conserved in bacteria
FOC82_15125	COG0840	transmembrane signaling receptor activity
FOC82_15140	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FOC82_15165	COG1414	Transcriptional regulator
FOC82_15195	COG1802	Transcriptional regulator
FOC82_15200	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC82_15215	COG1802	Transcriptional regulator
FOC82_15220	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_15260	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FOC82_15295	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FOC82_15305	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FOC82_15310	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
FOC82_15315	COG1534	Rna-binding protein
FOC82_15320	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FOC82_15325	COG0840	transmembrane signaling receptor activity
FOC82_15330	COG2233	PERMEase
FOC82_15350	COG3842	ATPase activity
FOC82_15360	COG0406	alpha-ribazole phosphatase activity
FOC82_15365	COG4221	oxidoreductase activity
FOC82_15370	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FOC82_15375	COG0505	Belongs to the CarA family
FOC82_15380	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FOC82_15390	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_15400	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC82_15405	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_15420	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FOC82_15430	COG1074	ATP-dependent DNA helicase activity
FOC82_15455	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC82_15475	COG1686	Belongs to the peptidase S11 family
FOC82_15500	COG4974	Belongs to the 'phage' integrase family
FOC82_15505	COG0583	DNA-binding transcription factor activity
FOC82_15510	COG0028	Belongs to the TPP enzyme family
FOC82_15515	COG1960	acyl-CoA dehydrogenase activity
FOC82_15530	COG2030	dehydratase
FOC82_15550	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FOC82_15595	COG3842	ATPase activity
FOC82_15600	COG2011	ABC-type metal ion transport system permease component
FOC82_15605	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC82_15620	COG0583	DNA-binding transcription factor activity
FOC82_15625	COG0028	Belongs to the TPP enzyme family
FOC82_15635	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_15655	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_15670	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC82_15675	COG1414	Transcriptional regulator
FOC82_15680	COG0009	L-threonylcarbamoyladenylate synthase
FOC82_15685	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FOC82_15690	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FOC82_15695	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FOC82_15705	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FOC82_15745	COG3454	Phosphonate metabolism
FOC82_15750	COG4778	phosphonate C-P lyase system protein PhnL
FOC82_15755	COG4107	phosphonate C-P lyase system protein PhnK
FOC82_15760	COG3627	carbon phosphorus lyase activity
FOC82_15765	COG3626	phosphonate metabolism
FOC82_15775	COG3624	Phosphonate C-P lyase system protein PhnG
FOC82_15780	COG2188	Transcriptional regulator
FOC82_15785	COG3454	Phosphonate metabolism
FOC82_15790	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
FOC82_15795	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
FOC82_15800	COG0583	DNA-binding transcription factor activity
FOC82_15805	COG0405	Gamma-glutamyltransferase
FOC82_15820	COG3639	organic phosphonate transmembrane transporter activity
FOC82_15825	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
FOC82_15830	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FOC82_15850	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FOC82_15860	COG0739	heme binding
FOC82_15870	COG0521	Mo-molybdopterin cofactor biosynthetic process
FOC82_15880	COG0306	phosphate transporter
FOC82_15920	COG0625	glutathione transferase activity
FOC82_15940	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FOC82_15945	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FOC82_15960	COG0126	phosphoglycerate kinase activity
FOC82_15965	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FOC82_15970	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FOC82_15975	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FOC82_15980	COG2732	(Barnase) inhibitor
FOC82_15990	COG0280	phosphate acetyltransferase
FOC82_15990	COG0281	malic enzyme
FOC82_16005	COG0741	lytic transglycosylase activity
FOC82_16010	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
FOC82_16025	COG4575	ribosome binding
FOC82_16040	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
FOC82_16045	COG2027	D-alanyl-D-alanine carboxypeptidase
FOC82_16060	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
FOC82_16065	COG0343	queuine tRNA-ribosyltransferase activity
FOC82_16070	COG1862	Preprotein translocase
FOC82_16075	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FOC82_16080	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FOC82_16085	COG0640	Transcriptional regulator
FOC82_16095	COG0740	serine-type endopeptidase activity
FOC82_16105	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FOC82_16115	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FOC82_16120	COG1702	phosphate starvation-inducible protein PhoH
FOC82_16125	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
FOC82_16130	COG4535	Mg2 and Co2 transporter CorC
FOC82_16135	COG0815	Transfers the fatty acyl group on membrane lipoproteins
FOC82_16140	COG0667	Aldo Keto reductase
FOC82_16180	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
FOC82_16185	COG0697	spore germination
FOC82_16195	COG0678	peroxiredoxin activity
FOC82_16205	COG0412	Dienelactone hydrolase
FOC82_16215	COG0315	cyclic pyranopterin monophosphate synthase activity
FOC82_16230	COG0521	Mo-molybdopterin cofactor biosynthetic process
FOC82_16235	COG0303	'Molybdopterin
FOC82_16240	COG0746	molybdenum cofactor guanylyltransferase activity
FOC82_16245	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FOC82_16255	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
FOC82_16265	COG3383	formate dehydrogenase (NAD+) activity
FOC82_16270	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FOC82_16280	COG2223	nitrite transmembrane transporter activity
FOC82_16305	COG0583	DNA-binding transcription factor activity
FOC82_16310	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
FOC82_16325	COG2205	protein histidine kinase activity
FOC82_16330	COG0745	RESPONSE REGULATOR receiver
FOC82_16350	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_16365	COG1943	Transposase
FOC82_16370	COG0456	acetyltransferase
FOC82_16450	COG0671	phosphoesterase, PA-phosphatase related
FOC82_16470	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
FOC82_16480	COG1666	GTP binding
FOC82_16490	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC82_16495	COG4558	Periplasmic binding protein
FOC82_16500	COG3720	iron ion transport
FOC82_16510	COG3712	iron ion homeostasis
FOC82_16515	COG1595	DNA-templated transcription, initiation
FOC82_16530	COG2378	regulation of single-species biofilm formation
FOC82_16545	COG1522	sequence-specific DNA binding
FOC82_16550	COG1272	protein, Hemolysin III
FOC82_16555	COG3191	aminopeptidase activity
FOC82_16560	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_16565	COG0765	amino acid transport
FOC82_16580	COG4771	TonB-dependent receptor
FOC82_16625	COG1999	signal sequence binding
FOC82_16645	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
FOC82_16655	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FOC82_16660	COG1845	cytochrome c oxidase, subunit III
FOC82_16675	COG4772	TonB-dependent receptor
FOC82_16700	COG0281	malic enzyme
FOC82_16700	COG0280	phosphate acetyltransferase
FOC82_16725	COG0697	spore germination
FOC82_16765	COG0456	acetyltransferase
FOC82_16770	COG1396	sequence-specific DNA binding
FOC82_16775	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC82_16795	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_16800	COG1285	pathogenesis
FOC82_16805	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_16810	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FOC82_16820	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FOC82_16830	COG2706	6-phosphogluconolactonase activity
FOC82_16840	COG3712	iron ion homeostasis
FOC82_16845	COG1595	DNA-templated transcription, initiation
FOC82_16855	COG0330	HflC and HflK could
FOC82_16875	COG2807	transmembrane transport
FOC82_16880	COG2207	Transcriptional regulator
FOC82_16885	COG4106	trans-aconitate 2-methyltransferase activity
FOC82_16890	COG0861	Integral membrane protein TerC family
FOC82_16895	COG0583	DNA-binding transcription factor activity
FOC82_16930	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FOC82_16935	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_16940	COG0477	Major facilitator Superfamily
FOC82_16945	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FOC82_16950	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FOC82_16955	COG1845	cytochrome c oxidase, subunit III
FOC82_16960	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
FOC82_16970	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FOC82_16975	COG2207	Transcriptional regulator
FOC82_16980	COG2814	Major facilitator Superfamily
FOC82_16985	COG0590	tRNA wobble adenosine to inosine editing
FOC82_17000	COG2818	Glycosylase
FOC82_17020	COG3795	YCII-related domain
FOC82_17025	COG0667	Aldo Keto reductase
FOC82_17035	COG4773	Receptor
FOC82_17050	COG3850	Histidine kinase
FOC82_17055	COG1024	Enoyl-CoA hydratase
FOC82_17060	COG1024	Enoyl-CoA hydratase
FOC82_17065	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_17070	COG1960	acyl-CoA dehydrogenase activity
FOC82_17075	COG2837	iron assimilation
FOC82_17105	COG0730	response to heat
FOC82_17110	COG2188	Transcriptional regulator
FOC82_17125	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_17140	COG1960	acyl-CoA dehydrogenase activity
FOC82_17150	COG1024	Enoyl-CoA hydratase
FOC82_17150	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_17155	COG0183	Belongs to the thiolase family
FOC82_17160	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_17175	COG1024	Enoyl-CoA hydratase
FOC82_17185	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_17195	COG0183	Belongs to the thiolase family
FOC82_17200	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_17205	COG2030	dehydratase
FOC82_17215	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC82_17220	COG1960	acyl-CoA dehydrogenase activity
FOC82_17225	COG1960	acyl-CoA dehydrogenase activity
FOC82_17235	COG0165	Argininosuccinate lyase
FOC82_17250	COG1280	lysine exporter protein (LysE YggA)
FOC82_17270	COG1802	Transcriptional regulator
FOC82_17275	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_17305	COG1024	Enoyl-CoA hydratase
FOC82_17315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_17325	COG0444	Belongs to the ABC transporter superfamily
FOC82_17345	COG1024	Enoyl-CoA hydratase
FOC82_17365	COG0765	amino acid transport
FOC82_17375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_17380	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_17390	COG0133	tryptophan synthase activity
FOC82_17420	COG0559	Belongs to the binding-protein-dependent transport system permease family
FOC82_17445	COG1902	pentaerythritol trinitrate reductase activity
FOC82_17450	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FOC82_17465	COG0583	DNA-binding transcription factor activity
FOC82_17485	COG0583	DNA-binding transcription factor activity
FOC82_17490	COG2814	Major facilitator Superfamily
FOC82_17510	COG3246	L-lysine catabolic process to acetate
FOC82_17515	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_17530	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
FOC82_17535	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
FOC82_17540	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FOC82_17560	COG0583	DNA-binding transcription factor activity
FOC82_17600	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_17620	COG1024	Enoyl-CoA hydratase
FOC82_17625	COG1024	Enoyl-CoA hydratase
FOC82_17630	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_17640	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_17650	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FOC82_17675	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_17685	COG1595	DNA-templated transcription, initiation
FOC82_17690	COG3712	iron ion homeostasis
FOC82_17695	COG4774	siderophore transport
FOC82_17705	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_17710	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FOC82_17775	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC82_17780	COG1960	acyl-CoA dehydrogenase activity
FOC82_17800	COG1053	succinate dehydrogenase
FOC82_17810	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
FOC82_17840	COG0583	DNA-binding transcription factor activity
FOC82_17845	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_17865	COG0747	negative chemotaxis
FOC82_17870	COG0601	transmembrane transport
FOC82_17875	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_17930	COG3501	Rhs element vgr protein
FOC82_17990	COG3501	Rhs element vgr protein
FOC82_18100	COG0583	DNA-binding transcription factor activity
FOC82_18105	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_18130	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC82_18135	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_18140	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FOC82_18145	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_18150	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_18155	COG0446	pyridine nucleotide-disulphide oxidoreductase
FOC82_18155	COG1902	pentaerythritol trinitrate reductase activity
FOC82_18175	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC82_18190	COG1126	abc transporter atp-binding protein
FOC82_18195	COG0765	amino acid transport
FOC82_18200	COG0765	amino acid transport
FOC82_18230	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FOC82_18235	COG0459	protein refolding
FOC82_18245	COG1846	Transcriptional regulator
FOC82_18265	COG1917	Cupin 2, conserved barrel domain protein
FOC82_18275	COG0246	Mannitol dehydrogenase
FOC82_18280	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
FOC82_18285	COG1252	NADH dehydrogenase
FOC82_18290	COG0284	orotidine-5'-phosphate decarboxylase activity
FOC82_18295	COG1546	Belongs to the CinA family
FOC82_18310	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FOC82_18315	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
FOC82_18340	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FOC82_18345	COG3639	organic phosphonate transmembrane transporter activity
FOC82_18350	COG3639	organic phosphonate transmembrane transporter activity
FOC82_18370	COG0742	ribosomal rna small subunit methyltransferase
FOC82_18375	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FOC82_18380	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FOC82_18385	COG3135	benzoate transporter
FOC82_18400	COG0477	Major facilitator Superfamily
FOC82_18425	COG0012	GTP binding
FOC82_18435	COG0193	aminoacyl-tRNA hydrolase activity
FOC82_18455	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
FOC82_18460	COG0840	transmembrane signaling receptor activity
FOC82_18465	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
FOC82_18475	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
FOC82_18520	COG1368	sulfuric ester hydrolase activity
FOC82_18525	COG2186	Transcriptional regulator
FOC82_18535	COG2205	protein histidine kinase activity
FOC82_18540	COG0745	RESPONSE REGULATOR receiver
FOC82_18545	COG0277	FAD linked oxidase domain protein
FOC82_18560	COG0166	Belongs to the GPI family
FOC82_18570	COG0438	transferase activity, transferring glycosyl groups
FOC82_18575	COG0438	transferase activity, transferring glycosyl groups
FOC82_18585	COG0438	transferase activity, transferring glycosyl groups
FOC82_18600	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FOC82_18605	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FOC82_18610	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
FOC82_18635	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_18660	COG0601	transmembrane transport
FOC82_18665	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_18670	COG4172	Belongs to the ABC transporter superfamily
FOC82_18675	COG0154	amidase activity
FOC82_18690	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
FOC82_18690	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
FOC82_18695	COG0509	glycine decarboxylation via glycine cleavage system
FOC82_18700	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FOC82_18715	COG2081	HI0933 family
FOC82_18720	COG1982	Orn Lys Arg decarboxylase major
FOC82_18730	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC82_18730	COG0456	acetyltransferase
FOC82_18735	COG2199	diguanylate cyclase activity
FOC82_18745	COG0717	Belongs to the dCTP deaminase family
FOC82_18760	COG0489	protein tyrosine kinase activity
FOC82_18770	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC82_18770	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC82_18800	COG0745	RESPONSE REGULATOR receiver
FOC82_18805	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FOC82_18810	COG2200	EAL domain
FOC82_18825	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FOC82_18830	COG1129	ABC transporter
FOC82_18830	COG0842	Transport permease protein
FOC82_18835	COG0842	Transport permease protein
FOC82_18850	COG0697	spore germination
FOC82_18855	COG1271	oxidase subunit
FOC82_18860	COG1294	oxidase, subunit
FOC82_18870	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_18890	COG1053	succinate dehydrogenase
FOC82_18890	COG3976	FMN-binding domain protein
FOC82_18900	COG0625	glutathione transferase activity
FOC82_18915	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FOC82_18925	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC82_18930	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FOC82_18940	COG0583	DNA-binding transcription factor activity
FOC82_18950	COG0583	DNA-binding transcription factor activity
FOC82_18955	COG3284	Transcriptional regulator
FOC82_18985	COG0583	DNA-binding transcription factor activity
FOC82_19005	COG0165	Argininosuccinate lyase
FOC82_19010	COG2986	histidine ammonia-lyase
FOC82_19025	COG0625	glutathione transferase activity
FOC82_19035	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
FOC82_19045	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
FOC82_19050	COG0583	DNA-binding transcription factor activity
FOC82_19055	COG3135	benzoate transporter
FOC82_19070	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
FOC82_19075	COG0583	DNA-binding transcription factor activity
FOC82_19085	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC82_19095	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_19100	COG1802	Transcriptional regulator
FOC82_19105	COG0519	Catalyzes the synthesis of GMP from XMP
FOC82_19105	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FOC82_19135	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FOC82_19140	COG0688	phosphatidylethanolamine metabolic process
FOC82_19150	COG1982	Orn Lys Arg decarboxylase major
FOC82_19165	COG0006	proline dipeptidase activity
FOC82_19170	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_19180	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FOC82_19190	COG1522	sequence-specific DNA binding
FOC82_19205	COG0583	DNA-binding transcription factor activity
FOC82_19215	COG2079	MmgE PrpD family protein
FOC82_19220	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC82_19225	COG0583	DNA-binding transcription factor activity
FOC82_19230	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_19235	COG1960	acyl-CoA dehydrogenase activity
FOC82_19255	COG1309	transcriptional regulator
FOC82_19270	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_19285	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_19290	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_19300	COG0583	DNA-binding transcription factor activity
FOC82_19305	COG4774	siderophore transport
FOC82_19310	COG1595	DNA-templated transcription, initiation
FOC82_19315	COG4774	siderophore transport
FOC82_19320	COG3712	iron ion homeostasis
FOC82_19325	COG1595	DNA-templated transcription, initiation
FOC82_19335	COG0387	Pfam Sodium calcium exchanger
FOC82_19345	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC82_19350	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FOC82_19360	COG1234	tRNA 3'-trailer cleavage
FOC82_19370	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
FOC82_19390	COG0747	negative chemotaxis
FOC82_19395	COG0601	transmembrane transport
FOC82_19400	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_19405	COG4172	Belongs to the ABC transporter superfamily
FOC82_19410	COG4608	Belongs to the ABC transporter superfamily
FOC82_19415	COG1349	DNA-binding transcription factor activity
FOC82_19425	COG0220	tRNA (guanine-N7-)-methyltransferase activity
FOC82_19445	COG1652	LysM domain
FOC82_19450	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FOC82_19455	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FOC82_19470	COG0625	glutathione transferase activity
FOC82_19475	COG1414	Transcriptional regulator
FOC82_19480	COG3734	2-keto-3-deoxy-galactonokinase
FOC82_19485	COG0800	Aldolase
FOC82_19490	COG4948	Mandelate Racemase Muconate Lactonizing
FOC82_19495	COG2271	Major facilitator Superfamily
FOC82_19500	COG1473	amidohydrolase
FOC82_19510	COG2814	Major facilitator Superfamily
FOC82_19535	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_19545	COG0604	alcohol dehydrogenase
FOC82_19560	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_19570	COG0326	Molecular chaperone. Has ATPase activity
FOC82_19575	COG2233	PERMEase
FOC82_19630	COG0583	DNA-binding transcription factor activity
FOC82_19635	COG4221	oxidoreductase activity
FOC82_19650	COG2721	sulfolactate sulfo-lyase activity
FOC82_19655	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_19660	COG1126	abc transporter atp-binding protein
FOC82_19665	COG0765	amino acid transport
FOC82_19675	COG1802	Transcriptional regulator
FOC82_19685	COG4774	siderophore transport
FOC82_19695	COG1595	DNA-templated transcription, initiation
FOC82_19715	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_19740	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC82_19745	COG0583	DNA-binding transcription factor activity
FOC82_19755	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FOC82_19765	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
FOC82_19770	COG1172	Belongs to the binding-protein-dependent transport system permease family
FOC82_19775	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
FOC82_19780	COG3246	L-lysine catabolic process to acetate
FOC82_19790	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_19830	COG5002	protein histidine kinase activity
FOC82_19835	COG2197	response regulator
FOC82_19870	COG1695	Transcriptional regulator
FOC82_19885	COG0477	Major facilitator Superfamily
FOC82_19900	COG0277	FAD linked oxidase domain protein
FOC82_19910	COG3842	ATPase activity
FOC82_19915	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC82_19930	COG5285	phytanoyl-CoA dioxygenase
FOC82_19935	COG0628	permease
FOC82_19940	COG0583	DNA-binding transcription factor activity
FOC82_19945	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FOC82_19995	COG1605	Chorismate mutase
FOC82_19995	COG0077	Prephenate dehydratase
FOC82_20005	COG2081	HI0933 family
FOC82_20010	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FOC82_20025	COG4177	L-phenylalanine transmembrane transporter activity
FOC82_20030	COG1129	ABC transporter
FOC82_20055	COG1024	Enoyl-CoA hydratase
FOC82_20065	COG0583	DNA-binding transcription factor activity
FOC82_20070	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_20085	COG1960	acyl-CoA dehydrogenase activity
FOC82_20090	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FOC82_20095	COG1414	Transcriptional regulator
FOC82_20115	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_20130	COG1126	abc transporter atp-binding protein
FOC82_20135	COG0765	amino acid transport
FOC82_20140	COG4597	amino acid ABC transporter
FOC82_20145	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_20150	COG2884	Cell division ATP-binding protein ftsE
FOC82_20155	COG2177	Part of the ABC transporter FtsEX involved in
FOC82_20170	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
FOC82_20180	COG2186	Transcriptional regulator
FOC82_20190	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FOC82_20220	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_20225	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FOC82_20235	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC82_20240	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC82_20245	COG0583	DNA-binding transcription factor activity
FOC82_20250	COG0129	dihydroxy-acid dehydratase activity
FOC82_20260	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FOC82_20265	COG0583	DNA-binding transcription factor activity
FOC82_20280	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
FOC82_20285	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
FOC82_20290	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_20295	COG2031	fatty acid transporter
FOC82_20300	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_20305	COG1414	Transcriptional regulator
FOC82_20315	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC82_20320	COG4829	muconolactone delta-isomerase
FOC82_20330	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FOC82_20350	COG0288	reversible hydration of carbon dioxide
FOC82_20355	COG1802	Transcriptional regulator
FOC82_20360	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_20370	COG0559	Belongs to the binding-protein-dependent transport system permease family
FOC82_20390	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_20405	COG0625	glutathione transferase activity
FOC82_20420	COG0583	DNA-binding transcription factor activity
FOC82_20450	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_20470	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FOC82_20475	COG2890	protein-(glutamine-N5) methyltransferase activity
FOC82_20480	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
FOC82_20495	COG3264	Mechanosensitive ion channel
FOC82_20495	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
FOC82_20520	COG1132	(ABC) transporter
FOC82_20535	COG2217	Heavy metal translocating P-type atpase
FOC82_20540	COG1595	DNA-templated transcription, initiation
FOC82_20555	COG1473	amidohydrolase
FOC82_20570	COG1522	sequence-specific DNA binding
FOC82_20580	COG5006	permease, DMT superfamily
FOC82_20590	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_20595	COG3622	Belongs to the hyi family
FOC82_20600	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FOC82_20605	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_20630	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
FOC82_20640	COG0583	DNA-binding transcription factor activity
FOC82_20650	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC82_20665	COG0022	dehydrogenase e1 component
FOC82_20670	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_20700	COG2186	Transcriptional regulator
FOC82_20705	COG3395	kinase activity
FOC82_20710	COG2084	Dehydrogenase
FOC82_20715	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC82_20720	COG3622	Belongs to the hyi family
FOC82_20725	COG2271	Major facilitator Superfamily
FOC82_20730	COG0235	Class ii aldolase
FOC82_20750	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
FOC82_20760	COG2084	Dehydrogenase
FOC82_20765	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FOC82_20770	COG0683	leucine binding
FOC82_20795	COG2188	Transcriptional regulator
FOC82_20810	COG0523	cobalamin synthesis protein
FOC82_20815	COG1335	isochorismatase
FOC82_20820	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
FOC82_20825	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FOC82_20830	COG1802	Transcriptional regulator
FOC82_20835	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
FOC82_20845	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_20865	COG4585	Histidine kinase
FOC82_20880	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_20890	COG0604	alcohol dehydrogenase
FOC82_20910	COG1960	acyl-CoA dehydrogenase activity
FOC82_20915	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_20920	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_20925	COG1024	Enoyl-CoA hydratase
FOC82_20930	COG0446	pyridine nucleotide-disulphide oxidoreductase
FOC82_20930	COG1902	pentaerythritol trinitrate reductase activity
FOC82_20935	COG1024	Enoyl-CoA hydratase
FOC82_20940	COG1846	Transcriptional regulator
FOC82_20960	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_20980	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FOC82_20985	COG1024	Enoyl-CoA hydratase
FOC82_20990	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_20995	COG2188	Transcriptional regulator
FOC82_21005	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC82_21015	COG0142	geranyltranstransferase activity
FOC82_21020	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FOC82_21025	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FOC82_21030	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
FOC82_21035	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
FOC82_21050	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FOC82_21075	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC82_21080	COG0793	Belongs to the peptidase S41A family
FOC82_21085	COG4942	peptidase
FOC82_21090	COG0588	phosphoglycerate mutase activity
FOC82_21100	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FOC82_21105	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
FOC82_21110	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
FOC82_21125	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FOC82_21130	COG1040	competence protein
FOC82_21135	COG2226	methyltransferase
FOC82_21140	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
FOC82_21145	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FOC82_21150	COG0569	domain protein
FOC82_21155	COG2204	response regulator
FOC82_21160	COG5000	phosphorelay sensor kinase activity
FOC82_21170	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FOC82_21175	COG1280	lysine exporter protein (LysE YggA)
FOC82_21200	COG0840	transmembrane signaling receptor activity
FOC82_21220	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FOC82_21230	COG1733	regulation of RNA biosynthetic process
FOC82_21250	COG0546	phosphoglycolate phosphatase activity
FOC82_21265	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FOC82_21270	COG0242	peptide deformylase activity
FOC82_21275	COG0758	DNA mediated transformation
FOC82_21290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_21295	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_21300	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FOC82_21310	COG0071	Belongs to the small heat shock protein (HSP20) family
FOC82_21325	COG1238	metal cluster binding
FOC82_21330	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FOC82_21335	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FOC82_21355	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FOC82_21360	COG4988	ABC transporter
FOC82_21370	COG1294	oxidase, subunit
FOC82_21375	COG1271	oxidase subunit
FOC82_21385	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
FOC82_21395	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
FOC82_21410	COG1137	ATPase activity
FOC82_21415	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FOC82_21425	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
FOC82_21430	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_21445	COG1660	Displays ATPase and GTPase activities
FOC82_21450	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FOC82_21455	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FOC82_21470	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
FOC82_21475	COG2823	Periplasmic or secreted lipoprotein
FOC82_21480	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC82_21490	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FOC82_21500	COG1309	transcriptional regulator
FOC82_21505	COG0471	metal ion transport
FOC82_21510	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FOC82_21515	COG0772	Belongs to the SEDS family
FOC82_21520	COG0768	penicillin binding
FOC82_21530	COG1792	Involved in formation and maintenance of cell shape
FOC82_21535	COG1077	Cell shape determining protein MreB Mrl
FOC82_21540	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FOC82_21545	COG0154	amidase activity
FOC82_21550	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FOC82_21565	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
FOC82_21570	COG0708	Exodeoxyribonuclease III
FOC82_21580	COG1280	lysine exporter protein (LysE YggA)
FOC82_21585	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FOC82_21595	COG0583	DNA-binding transcription factor activity
FOC82_21605	COG0583	DNA-binding transcription factor activity
FOC82_21630	COG1764	response to oxidative stress
FOC82_21635	COG1846	Transcriptional regulator
FOC82_21680	COG0730	response to heat
FOC82_21700	COG0640	Transcriptional regulator
FOC82_21730	COG3189	MarR family transcriptional regulator
FOC82_21735	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_21740	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FOC82_21745	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
FOC82_21750	COG0513	Belongs to the DEAD box helicase family
FOC82_21790	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FOC82_21795	COG2308	Evidence 4 Homologs of previously reported genes of
FOC82_21805	COG1305	Transglutaminase-like
FOC82_21830	COG2301	Belongs to the HpcH HpaI aldolase family
FOC82_21835	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_21850	COG1950	PFAM Membrane protein of
FOC82_21855	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
FOC82_21860	COG0438	transferase activity, transferring glycosyl groups
FOC82_21870	COG0596	Alpha beta hydrolase
FOC82_21875	COG0066	3-isopropylmalate dehydratase activity
FOC82_21885	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_21890	COG0583	DNA-binding transcription factor activity
FOC82_21900	COG0477	Major facilitator Superfamily
FOC82_21905	COG0154	amidase activity
FOC82_21910	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FOC82_21920	COG1560	Kdo2-lipid A biosynthetic process
FOC82_21925	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
FOC82_21935	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
FOC82_21940	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
FOC82_21965	COG0735	belongs to the Fur family
FOC82_21970	COG0523	cobalamin synthesis protein
FOC82_21980	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
FOC82_21985	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
FOC82_21995	COG2096	Adenosyltransferase
FOC82_22020	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
FOC82_22040	COG0321	lipoyl(octanoyl) transferase activity
FOC82_22055	COG1686	Belongs to the peptidase S11 family
FOC82_22080	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FOC82_22090	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
FOC82_22105	COG0859	PFAM glycosyl transferase family 9
FOC82_22150	COG0110	maltose O-acetyltransferase activity
FOC82_22170	COG0482	sulfurtransferase activity
FOC82_22175	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FOC82_22185	COG1086	Polysaccharide biosynthesis protein
FOC82_22210	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FOC82_22245	COG0367	asparagine synthase
FOC82_22260	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FOC82_22270	COG2226	methyltransferase
FOC82_22295	COG2814	Major facilitator Superfamily
FOC82_22300	COG0697	spore germination
FOC82_22310	COG3568	Endonuclease Exonuclease Phosphatase
FOC82_22315	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FOC82_22340	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC82_22355	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC82_22360	COG1956	GAF domain-containing protein
FOC82_22365	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_22390	COG2186	Transcriptional regulator
FOC82_22425	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FOC82_22455	COG2814	Major facilitator Superfamily
FOC82_22465	COG0625	glutathione transferase activity
FOC82_22470	COG0583	DNA-binding transcription factor activity
FOC82_22480	COG1473	amidohydrolase
FOC82_22485	COG0232	Belongs to the dGTPase family. Type 2 subfamily
FOC82_22490	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
FOC82_22495	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FOC82_22505	COG1965	Belongs to the frataxin family
FOC82_22515	COG0019	diaminopimelate decarboxylase activity
FOC82_22520	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FOC82_22525	COG1333	cytochrome c biogenesis protein
FOC82_22540	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FOC82_22570	COG0683	leucine binding
FOC82_22575	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_22580	COG1053	succinate dehydrogenase
FOC82_22590	COG4232	protein-disulfide reductase activity
FOC82_22595	COG1324	tolerance protein
FOC82_22605	COG0203	ribosomal protein L17
FOC82_22610	COG0202	RNA polymerase activity
FOC82_22615	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FOC82_22620	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FOC82_22625	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FOC82_22630	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FOC82_22635	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FOC82_22640	COG0201	protein transport
FOC82_22645	COG0200	Binds to the 23S rRNA
FOC82_22650	COG1841	ribosomal large subunit assembly
FOC82_22655	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FOC82_22660	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FOC82_22665	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
FOC82_22670	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FOC82_22675	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
FOC82_22680	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FOC82_22685	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
FOC82_22690	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FOC82_22715	COG2207	Transcriptional regulator
FOC82_22740	COG4177	L-phenylalanine transmembrane transporter activity
FOC82_22755	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FOC82_22760	COG0255	Belongs to the universal ribosomal protein uL29 family
FOC82_22765	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FOC82_22770	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FOC82_22775	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FOC82_22780	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
FOC82_22785	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FOC82_22790	COG0089	rRNA binding
FOC82_22800	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FOC82_22805	COG0051	transcription antitermination factor activity, RNA binding
FOC82_22810	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FOC82_22815	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
FOC82_22820	COG0049	tRNA binding
FOC82_22825	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FOC82_22830	COG0745	RESPONSE REGULATOR receiver
FOC82_22845	COG5002	protein histidine kinase activity
FOC82_22860	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FOC82_22865	COG0085	RNA polymerase activity
FOC82_22870	COG0222	ribosome binding
FOC82_22875	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FOC82_22880	COG0081	regulation of translation
FOC82_22885	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
FOC82_22895	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FOC82_22905	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FOC82_22930	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_22945	COG1840	ABC-type Fe3 transport system, periplasmic component
FOC82_22950	COG3842	ATPase activity
FOC82_22960	COG1349	DNA-binding transcription factor activity
FOC82_22985	COG0583	DNA-binding transcription factor activity
FOC82_22990	COG0252	asparaginase activity
FOC82_22995	COG1475	DNA binding
FOC82_23005	COG1192	Involved in chromosome partitioning
FOC82_23010	COG0357	Ribosomal RNA small subunit methyltransferase G
FOC82_23015	COG0445	tRNA wobble uridine modification
FOC82_23020	COG1278	Cold shock
FOC82_23025	COG3180	Ammonia monooxygenase
FOC82_23030	COG0436	Aminotransferase
FOC82_23050	COG0642	Histidine kinase
FOC82_23060	COG0038	chloride channel
FOC82_23085	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FOC82_23095	COG0601	transmembrane transport
FOC82_23100	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_23105	COG0444	Belongs to the ABC transporter superfamily
FOC82_23110	COG4608	Belongs to the ABC transporter superfamily
FOC82_23115	COG1473	amidohydrolase
FOC82_23120	COG2175	clavaminate synthase activity
FOC82_23130	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FOC82_23140	COG0753	catalase activity
FOC82_23150	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
FOC82_23155	COG0594	ribonuclease P activity
FOC82_23160	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FOC82_23165	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FOC82_23170	COG0592	DNA-directed DNA polymerase activity
FOC82_23185	COG1126	abc transporter atp-binding protein
FOC82_23190	COG0154	amidase activity
FOC82_23195	COG1917	Cupin 2, conserved barrel domain protein
FOC82_23220	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC82_23230	COG0477	Major facilitator Superfamily
FOC82_23235	COG0129	dihydroxy-acid dehydratase activity
FOC82_23240	COG2186	Transcriptional regulator
FOC82_23245	COG0583	DNA-binding transcription factor activity
FOC82_23250	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_23255	COG0765	amino acid transport
FOC82_23260	COG0765	amino acid transport
FOC82_23265	COG1126	abc transporter atp-binding protein
FOC82_23290	COG1304	FMN binding
FOC82_23315	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_23340	COG3842	ATPase activity
FOC82_23345	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC82_23350	COG1177	transmembrane transport
FOC82_23375	COG0251	oxidation-reduction process
FOC82_23380	COG0402	S-adenosylhomocysteine deaminase activity
FOC82_23400	COG1744	ABC transporter substrate-binding protein PnrA-like
FOC82_23410	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FOC82_23425	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC82_23440	COG2814	Major facilitator Superfamily
FOC82_23455	COG3781	membrane
FOC82_23460	COG1522	sequence-specific DNA binding
FOC82_23465	COG0028	Belongs to the TPP enzyme family
FOC82_23470	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_23475	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_23480	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
FOC82_23500	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FOC82_23505	COG2922	Belongs to the Smg family
FOC82_23515	COG2358	TRAP transporter, solute receptor (TAXI family
FOC82_23545	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FOC82_23550	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_23565	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_23650	COG3712	iron ion homeostasis
FOC82_23655	COG1595	DNA-templated transcription, initiation
FOC82_23670	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
FOC82_23715	COG0693	protein deglycase activity
FOC82_23730	COG0668	transmembrane transport
FOC82_23740	COG1982	Orn Lys Arg decarboxylase major
FOC82_23745	COG2985	domain, Protein
FOC82_23770	COG0477	Major facilitator Superfamily
FOC82_23780	COG0583	DNA-binding transcription factor activity
FOC82_23785	COG0492	ferredoxin-NADP+ reductase activity
FOC82_23795	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_23815	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FOC82_23820	COG0183	Belongs to the thiolase family
FOC82_23825	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
FOC82_23830	COG1960	acyl-CoA dehydrogenase activity
FOC82_23835	COG1473	amidohydrolase
FOC82_23860	COG0778	Nitroreductase
FOC82_23870	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FOC82_23880	COG0018	arginyl-trna synthetase
FOC82_23900	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
FOC82_23910	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_23915	COG0395	ABC-type sugar transport system, permease component
FOC82_23920	COG1175	transmembrane transport
FOC82_23925	COG1653	transport
FOC82_23930	COG3842	ATPase activity
FOC82_23935	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FOC82_23940	COG1609	Transcriptional regulator
FOC82_23950	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FOC82_23960	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FOC82_23970	COG0583	DNA-binding transcription factor activity
FOC82_23990	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
FOC82_23995	COG1280	lysine exporter protein (LysE YggA)
FOC82_24000	COG0513	Belongs to the DEAD box helicase family
FOC82_24005	COG5339	Protein conserved in bacteria
FOC82_24010	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
FOC82_24020	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_24025	COG0601	transmembrane transport
FOC82_24030	COG0747	negative chemotaxis
FOC82_24035	COG1160	GTP binding
FOC82_24055	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FOC82_24065	COG0583	DNA-binding transcription factor activity
FOC82_24095	COG2969	positive regulation of protein catabolic process
FOC82_24100	COG0625	glutathione transferase activity
FOC82_24105	COG2857	Cytochrome c1
FOC82_24110	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FOC82_24115	COG0723	plastoquinol--plastocyanin reductase activity
FOC82_24120	COG1970	mechanosensitive ion channel activity
FOC82_24125	COG0235	Class ii aldolase
FOC82_24135	COG0477	Major facilitator Superfamily
FOC82_24145	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FOC82_24150	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC82_24165	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FOC82_24170	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FOC82_24175	COG0537	adenosine 5'-monophosphoramidase activity
FOC82_24180	COG0140	phosphoribosyl-ATP diphosphatase activity
FOC82_24190	COG0107	imidazoleglycerol-phosphate synthase activity
FOC82_24195	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
FOC82_24200	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FOC82_24205	COG0131	Imidazoleglycerol-phosphate dehydratase
FOC82_24210	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FOC82_24215	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FOC82_24220	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
FOC82_24225	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FOC82_24235	COG0842	Transport permease protein
FOC82_24240	COG1131	(ABC) transporter
FOC82_24250	COG2853	Lipoprotein
FOC82_24255	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FOC82_24260	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FOC82_24265	COG1127	ABC transporter
FOC82_24270	COG2070	2-Nitropropane dioxygenase
FOC82_24280	COG0477	Major facilitator Superfamily
FOC82_24285	COG0583	DNA-binding transcription factor activity
FOC82_24300	COG0069	glutamate synthase activity
FOC82_24300	COG0070	glutamate synthase
FOC82_24300	COG0067	glutamate synthase
FOC82_24330	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FOC82_24350	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FOC82_24380	COG1612	heme a metabolic process
FOC82_24390	COG1999	signal sequence binding
FOC82_24410	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
FOC82_24415	COG2814	Major facilitator Superfamily
FOC82_24430	COG1522	sequence-specific DNA binding
FOC82_24460	COG2188	Transcriptional regulator
FOC82_24470	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FOC82_24480	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_24490	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_24495	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_24505	COG0477	Major facilitator Superfamily
FOC82_24510	COG0861	Integral membrane protein TerC family
FOC82_24520	COG0484	heat shock protein binding
FOC82_24550	COG0154	amidase activity
FOC82_24555	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_24560	COG0583	DNA-binding transcription factor activity
FOC82_24570	COG0583	DNA-binding transcription factor activity
FOC82_24585	COG2423	ornithine cyclodeaminase activity
FOC82_24595	COG1522	sequence-specific DNA binding
FOC82_24600	COG2423	ornithine cyclodeaminase activity
FOC82_24615	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FOC82_24620	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
FOC82_24630	COG0438	transferase activity, transferring glycosyl groups
FOC82_24645	COG2188	Transcriptional regulator
FOC82_24660	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
FOC82_24685	COG2814	Major facilitator Superfamily
FOC82_24690	COG0583	DNA-binding transcription factor activity
FOC82_24695	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_24700	COG1473	amidohydrolase
FOC82_24705	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FOC82_24755	COG1802	Transcriptional regulator
FOC82_24765	COG3069	C4-dicarboxylate transmembrane transporter activity
FOC82_24790	COG3585	molybdate ion transport
FOC82_24795	COG3064	Membrane
FOC82_24830	COG1607	acyl-coa hydrolase
FOC82_24845	COG0437	4 iron, 4 sulfur cluster binding
FOC82_24850	COG2864	formate dehydrogenase
FOC82_24865	COG3276	selenocysteine insertion sequence binding
FOC82_24875	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC82_24880	COG1305	Transglutaminase-like
FOC82_24890	COG0583	DNA-binding transcription factor activity
FOC82_24915	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_24920	COG3284	Transcriptional regulator
FOC82_24925	COG0134	indole-3-glycerol-phosphate synthase activity
FOC82_24930	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FOC82_24935	COG0512	Glutamine amidotransferase of anthranilate synthase
FOC82_24945	COG0546	phosphoglycolate phosphatase activity
FOC82_24950	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FOC82_24955	COG2967	ApaG domain
FOC82_24960	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FOC82_24965	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FOC82_24975	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FOC82_24980	COG0037	tRNA processing
FOC82_25005	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC82_25015	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FOC82_25020	COG0583	DNA-binding transcription factor activity
FOC82_25025	COG3473	Maleate cis-trans isomerase
FOC82_25030	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_25035	COG0583	DNA-binding transcription factor activity
FOC82_25045	COG1024	Enoyl-CoA hydratase
FOC82_25060	COG0356	it plays a direct role in the translocation of protons across the membrane
FOC82_25075	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FOC82_25080	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
FOC82_25085	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
FOC82_25095	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FOC82_25105	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
FOC82_25110	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FOC82_25115	COG0210	DNA helicase
FOC82_25120	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
FOC82_25130	COG2171	N-acyltransferase activity
FOC82_25140	COG2195	Cleaves the N-terminal amino acid of tripeptides
FOC82_25150	COG4608	Belongs to the ABC transporter superfamily
FOC82_25160	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_25165	COG0601	transmembrane transport
FOC82_25170	COG0747	negative chemotaxis
FOC82_25175	COG2988	succinylglutamate desuccinylase activity
FOC82_25180	COG0583	DNA-binding transcription factor activity
FOC82_25185	COG0747	negative chemotaxis
FOC82_25195	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FOC82_25200	COG1024	Enoyl-CoA hydratase
FOC82_25205	COG1024	Enoyl-CoA hydratase
FOC82_25215	COG1309	transcriptional regulator
FOC82_25230	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_25250	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_25280	COG3246	L-lysine catabolic process to acetate
FOC82_25285	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_25300	COG0784	Response regulator, receiver
FOC82_25300	COG2205	protein histidine kinase activity
FOC82_25310	COG0784	Response regulator, receiver
FOC82_25310	COG2205	protein histidine kinase activity
FOC82_25315	COG2197	response regulator
FOC82_25330	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC82_25335	COG1802	Transcriptional regulator
FOC82_25340	COG0583	DNA-binding transcription factor activity
FOC82_25360	COG2918	glutathione biosynthetic process
FOC82_25385	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
FOC82_25390	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FOC82_25400	COG2721	sulfolactate sulfo-lyase activity
FOC82_25405	COG2721	sulfolactate sulfo-lyase activity
FOC82_25410	COG2188	Transcriptional regulator
FOC82_25415	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FOC82_25420	COG2813	Specifically methylates the guanine in position
FOC82_25420	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FOC82_25425	COG2223	nitrite transmembrane transporter activity
FOC82_25435	COG2860	membrane
FOC82_25440	COG1802	Transcriptional regulator
FOC82_25450	COG1984	allophanate hydrolase subunit 2
FOC82_25455	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FOC82_25470	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FOC82_25485	COG2132	Multicopper oxidase
FOC82_25490	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
FOC82_25505	COG5002	protein histidine kinase activity
FOC82_25510	COG0745	RESPONSE REGULATOR receiver
FOC82_25515	COG2226	methyltransferase
FOC82_25530	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FOC82_25540	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FOC82_25550	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FOC82_25555	COG0351	phosphomethylpyrimidine kinase
FOC82_25560	COG2022	thiamine diphosphate biosynthetic process
FOC82_25565	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC82_25570	COG4771	TonB-dependent receptor
FOC82_25585	COG2226	methyltransferase
FOC82_25595	COG1802	Transcriptional regulator
FOC82_25600	COG0028	Belongs to the TPP enzyme family
FOC82_25615	COG4214	carbohydrate transport
FOC82_25645	COG1194	a g-specific adenine glycosylase
FOC82_25660	COG0477	Major facilitator Superfamily
FOC82_25670	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
FOC82_25675	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
FOC82_25695	COG0237	dephospho-CoA kinase activity
FOC82_25700	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
FOC82_25720	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC82_25735	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_25740	COG0583	DNA-binding transcription factor activity
FOC82_25755	COG4774	siderophore transport
FOC82_25775	COG0154	amidase activity
FOC82_25785	COG0583	DNA-binding transcription factor activity
FOC82_25880	COG3706	GGDEF domain
FOC82_25895	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_25900	COG1024	Enoyl-CoA hydratase
FOC82_25925	COG2207	Transcriptional regulator
FOC82_25940	COG4638	Rieske (2fe-2S)
FOC82_25950	COG1335	isochorismatase
FOC82_25955	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_25965	COG0741	lytic transglycosylase activity
FOC82_25970	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
FOC82_25975	COG0352	thiamine-phosphate diphosphorylase activity
FOC82_25980	COG0351	phosphomethylpyrimidine kinase
FOC82_25980	COG0352	thiamine-phosphate diphosphorylase activity
FOC82_25980	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FOC82_25990	COG1678	Uncharacterized ACR, COG1678
FOC82_25995	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
FOC82_26000	COG0540	Belongs to the ATCase OTCase family
FOC82_26020	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC82_26030	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC82_26040	COG0765	amino acid transport
FOC82_26045	COG1126	abc transporter atp-binding protein
FOC82_26050	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FOC82_26060	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC82_26065	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FOC82_26080	COG1175	transmembrane transport
FOC82_26090	COG0642	Histidine kinase
FOC82_26100	COG0557	exoribonuclease II activity
FOC82_26105	COG3150	esterase
FOC82_26110	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FOC82_26115	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC82_26120	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FOC82_26125	COG0511	ligase activity, forming carbon-carbon bonds
FOC82_26130	COG0439	Biotin carboxylase
FOC82_26135	COG2264	protein methyltransferase activity
FOC82_26145	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
FOC82_26145	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FOC82_26170	COG1696	Membrane protein involved in D-alanine export
FOC82_26175	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FOC82_26180	COG0762	integral membrane protein
FOC82_26205	COG1522	sequence-specific DNA binding
FOC82_26220	COG0583	DNA-binding transcription factor activity
FOC82_26230	COG0477	Major facilitator Superfamily
FOC82_26235	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FOC82_26240	COG0045	succinate-CoA ligase (ADP-forming) activity
FOC82_26240	COG1042	CoA-binding domain protein
FOC82_26240	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC82_26245	COG1335	isochorismatase
FOC82_26250	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_26255	COG1116	anion transmembrane transporter activity
FOC82_26270	COG3028	Belongs to the UPF0307 family
FOC82_26275	COG0312	modulator of DNA gyrase
FOC82_26280	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FOC82_26290	COG0559	Belongs to the binding-protein-dependent transport system permease family
FOC82_26295	COG4177	L-phenylalanine transmembrane transporter activity
FOC82_26310	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FOC82_26315	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
FOC82_26320	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
FOC82_26330	COG0316	Belongs to the HesB IscA family
FOC82_26335	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
FOC82_26345	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FOC82_26355	COG1280	lysine exporter protein (LysE YggA)
FOC82_26360	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
FOC82_26365	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
FOC82_26370	COG2207	Transcriptional regulator
FOC82_26380	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FOC82_26380	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FOC82_26385	COG2766	serine protein kinase
FOC82_26390	COG2718	Belongs to the UPF0229 family
FOC82_26395	COG2719	SpoVR family
FOC82_26415	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_26450	COG4789	Type iii secretion
FOC82_26520	COG4669	(LipO)protein
FOC82_26550	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC82_26555	COG4790	Type iii secretion
FOC82_26560	COG4794	Type iii secretion
FOC82_26565	COG4791	protein targeting
FOC82_26570	COG4792	protein secretion
FOC82_26600	COG2208	phosphoserine phosphatase activity
FOC82_26600	COG2770	Histidine kinase
FOC82_26610	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FOC82_26615	COG2172	sigma factor antagonist activity
FOC82_26620	COG1366	Belongs to the anti-sigma-factor antagonist family
FOC82_26640	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_26660	COG1388	LysM domain
FOC82_26660	COG0741	lytic transglycosylase activity
FOC82_26665	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC82_26670	COG2226	methyltransferase
FOC82_26675	COG0328	RNA-DNA hybrid ribonuclease activity
FOC82_26685	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC82_26690	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FOC82_26705	COG1671	Belongs to the UPF0178 family
FOC82_26720	COG0786	glutamate:sodium symporter activity
FOC82_26730	COG0463	Glycosyl transferase, family 2
FOC82_26735	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
FOC82_26750	COG0583	DNA-binding transcription factor activity
FOC82_26765	COG0583	DNA-binding transcription factor activity
FOC82_26775	COG1346	cytolysis
FOC82_26785	COG0697	spore germination
FOC82_26790	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_26805	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
FOC82_26815	COG1522	sequence-specific DNA binding
FOC82_26830	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
FOC82_26835	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC82_26850	COG0823	Involved in the tonB-independent uptake of proteins
FOC82_26860	COG0848	biopolymer transport protein
FOC82_26865	COG0811	peptide transport
FOC82_26870	COG0824	Thioesterase
FOC82_26905	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FOC82_26920	COG2084	Dehydrogenase
FOC82_26965	COG0129	dihydroxy-acid dehydratase activity
FOC82_26970	COG4654	Cytochrome c, class I
FOC82_26975	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC82_26985	COG1522	sequence-specific DNA binding
FOC82_27040	COG1280	lysine exporter protein (LysE YggA)
FOC82_27045	COG0583	DNA-binding transcription factor activity
FOC82_27055	COG1473	amidohydrolase
FOC82_27060	COG0418	dihydroorotase activity
FOC82_27075	COG2001	Belongs to the MraZ family
FOC82_27080	COG0275	rRNA processing
FOC82_27085	COG3116	cell division
FOC82_27095	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FOC82_27100	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FOC82_27105	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
FOC82_27120	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FOC82_27125	COG1181	Belongs to the D-alanine--D-alanine ligase family
FOC82_27130	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FOC82_27140	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FOC82_27145	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
FOC82_27155	COG0739	heme binding
FOC82_27160	COG0653	protein targeting
FOC82_27180	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_27185	COG0028	Belongs to the TPP enzyme family
FOC82_27195	COG1522	sequence-specific DNA binding
FOC82_27210	COG2239	Acts as a magnesium transporter
FOC82_27220	COG2855	membrane
FOC82_27230	COG1473	amidohydrolase
FOC82_27235	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_27245	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC82_27245	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
FOC82_27250	COG1501	Belongs to the glycosyl hydrolase 31 family
FOC82_27255	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FOC82_27260	COG2011	ABC-type metal ion transport system permease component
FOC82_27280	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_27295	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FOC82_27300	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC82_27310	COG0583	DNA-binding transcription factor activity
FOC82_27315	COG1335	isochorismatase
FOC82_27330	COG0735	belongs to the Fur family
FOC82_27345	COG2818	Glycosylase
FOC82_27350	COG1368	sulfuric ester hydrolase activity
FOC82_27355	COG2982	Protein involved in outer membrane biogenesis
FOC82_27370	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_27380	COG1802	Transcriptional regulator
FOC82_27385	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FOC82_27390	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FOC82_27400	COG0601	transmembrane transport
FOC82_27420	COG0300	oxidoreductase activity
FOC82_27425	COG2814	Major facilitator Superfamily
FOC82_27460	COG2154	pterin-4-alpha-carbinolamine dehydratase
FOC82_27485	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FOC82_27500	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC82_27505	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
FOC82_27510	COG1929	Belongs to the glycerate kinase type-1 family
FOC82_27515	COG0469	pyruvate kinase activity
FOC82_27520	COG0700	Nucleoside recognition
FOC82_27525	COG1960	acyl-CoA dehydrogenase activity
FOC82_27530	COG0242	peptide deformylase activity
FOC82_27550	COG0204	Acyl-transferase
FOC82_27555	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FOC82_27560	COG0751	glycine-tRNA ligase activity
FOC82_27565	COG0752	glycyl-tRNA synthetase alpha subunit
FOC82_27585	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FOC82_27590	COG1024	Enoyl-CoA hydratase
FOC82_27600	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_27605	COG2030	dehydratase
FOC82_27610	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_27615	COG0583	DNA-binding transcription factor activity
FOC82_27635	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_27640	COG0183	Belongs to the thiolase family
FOC82_27650	COG1960	acyl-CoA dehydrogenase activity
FOC82_27660	COG1024	Enoyl-CoA hydratase
FOC82_27670	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
FOC82_27680	COG2301	Belongs to the HpcH HpaI aldolase family
FOC82_27685	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FOC82_27695	COG0617	tRNA 3'-terminal CCA addition
FOC82_27710	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
FOC82_27715	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
FOC82_27720	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
FOC82_27725	COG0586	Pfam SNARE associated Golgi protein
FOC82_27730	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC82_27735	COG0802	atpase or kinase
FOC82_27750	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_27765	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_27770	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_27775	COG1960	acyl-CoA dehydrogenase activity
FOC82_27780	COG0583	DNA-binding transcription factor activity
FOC82_27785	COG0659	secondary active sulfate transmembrane transporter activity
FOC82_27795	COG0579	oxidoreductase
FOC82_27805	COG0259	pyridoxamine-phosphate oxidase activity
FOC82_27820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FOC82_27825	COG1136	(ABC) transporter
FOC82_27825	COG0577	efflux transmembrane transporter activity
FOC82_27830	COG1538	Outer membrane efflux protein
FOC82_27835	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FOC82_27870	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FOC82_27895	COG0463	Glycosyl transferase, family 2
FOC82_27895	COG1216	Glycosyl transferase, family 2
FOC82_27920	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_27925	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
FOC82_27950	COG4638	Rieske (2fe-2S)
FOC82_27975	COG0747	negative chemotaxis
FOC82_27985	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_27990	COG0444	Belongs to the ABC transporter superfamily
FOC82_27995	COG4608	Belongs to the ABC transporter superfamily
FOC82_28015	COG0488	(ABC) transporter
FOC82_28030	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
FOC82_28035	COG2894	cell division
FOC82_28040	COG0850	regulation of cytokinetic process
FOC82_28045	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FOC82_28055	COG1294	oxidase, subunit
FOC82_28060	COG0514	ATP-dependent DNA helicase (RecQ)
FOC82_28070	COG0745	RESPONSE REGULATOR receiver
FOC82_28075	COG4191	Histidine kinase
FOC82_28080	COG2255	four-way junction helicase activity
FOC82_28090	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC82_28095	COG0632	four-way junction helicase activity
FOC82_28100	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
FOC82_28120	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FOC82_28130	COG0006	proline dipeptidase activity
FOC82_28145	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
FOC82_28150	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FOC82_28165	COG4783	chaperone-mediated protein folding
FOC82_28170	COG0429	hydrolase of the alpha beta-hydrolase fold
FOC82_28200	COG0513	Belongs to the DEAD box helicase family
FOC82_28215	COG1546	Belongs to the CinA family
FOC82_28215	COG1058	Belongs to the CinA family
FOC82_28220	COG1414	Transcriptional regulator
FOC82_28235	COG0167	dihydroorotate dehydrogenase activity
FOC82_28245	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
FOC82_28315	COG0028	Belongs to the TPP enzyme family
FOC82_28315	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
FOC82_28320	COG1063	alcohol dehydrogenase
FOC82_28330	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_28345	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_28380	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FOC82_28385	COG0735	belongs to the Fur family
FOC82_28390	COG0497	DNA recombination
FOC82_28400	COG1420	regulation of RNA biosynthetic process
FOC82_28405	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
FOC82_28415	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FOC82_28425	COG0443	Heat shock 70 kDa protein
FOC82_28430	COG0484	heat shock protein binding
FOC82_28440	COG0612	Peptidase, M16
FOC82_28465	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FOC82_28495	COG0840	transmembrane signaling receptor activity
FOC82_28500	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC82_28515	COG0745	RESPONSE REGULATOR receiver
FOC82_28520	COG2205	protein histidine kinase activity
FOC82_28525	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
FOC82_28530	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
FOC82_28535	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
FOC82_28550	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC82_28560	COG1193	negative regulation of DNA recombination
FOC82_28565	COG0492	ferredoxin-NADP+ reductase activity
FOC82_28570	COG1674	ftsk spoiiie
FOC82_28575	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
FOC82_28585	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
FOC82_28590	COG0517	IMP dehydrogenase activity
FOC82_28590	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
FOC82_28610	COG0601	transmembrane transport
FOC82_28615	COG0747	negative chemotaxis
FOC82_28625	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FOC82_28630	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FOC82_28635	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
FOC82_28680	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC82_28690	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FOC82_28700	COG0477	Major facilitator Superfamily
FOC82_28705	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FOC82_28710	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC82_28715	COG2885	chlorophyll binding
FOC82_28730	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_28735	COG3022	response to hydroperoxide
FOC82_28740	COG1289	transmembrane transporter activity
FOC82_28745	COG0028	Belongs to the TPP enzyme family
FOC82_28750	COG0440	acetolactate synthase activity
FOC82_28755	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
FOC82_28760	COG1183	phosphatidylcholine synthase activity
FOC82_28770	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FOC82_28775	COG1185	polyribonucleotide nucleotidyltransferase activity
FOC82_28785	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FOC82_28800	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FOC82_28820	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FOC82_28820	COG1648	precorrin-2 dehydrogenase activity
FOC82_28825	COG2010	Cytochrome c
FOC82_28850	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FOC82_28870	COG2010	Cytochrome c
FOC82_28875	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC82_28880	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FOC82_28890	COG0604	alcohol dehydrogenase
FOC82_28890	COG3321	synthase
FOC82_28895	COG0149	triose-phosphate isomerase activity
FOC82_28900	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FOC82_28905	COG1737	Transcriptional regulator
FOC82_28910	COG0647	UMP catabolic process
FOC82_28920	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FOC82_28945	COG0583	DNA-binding transcription factor activity
FOC82_28950	COG5383	Protein conserved in bacteria
FOC82_28985	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC82_28995	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_29000	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_29005	COG0028	Belongs to the TPP enzyme family
FOC82_29010	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_29020	COG0583	DNA-binding transcription factor activity
FOC82_29060	COG0583	DNA-binding transcription factor activity
FOC82_29065	COG0251	oxidation-reduction process
FOC82_29080	COG0583	DNA-binding transcription factor activity
FOC82_29085	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_29090	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_29125	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_29135	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_29145	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_29155	COG0183	Belongs to the thiolase family
FOC82_29160	COG2030	dehydratase
FOC82_29165	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_29175	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FOC82_29195	COG1024	Enoyl-CoA hydratase
FOC82_29215	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC82_29255	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC82_29260	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FOC82_29275	COG2267	carboxylic ester hydrolase activity
FOC82_29285	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_29315	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_29325	COG1024	Enoyl-CoA hydratase
FOC82_29330	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_29345	COG1802	Transcriptional regulator
FOC82_29355	COG1335	isochorismatase
FOC82_29360	COG2814	Major facilitator Superfamily
FOC82_29375	COG0583	DNA-binding transcription factor activity
FOC82_29385	COG0583	DNA-binding transcription factor activity
FOC82_29390	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FOC82_29395	COG3842	ATPase activity
FOC82_29400	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC82_29410	COG0006	proline dipeptidase activity
FOC82_29475	COG1116	anion transmembrane transporter activity
FOC82_29560	COG0318	PFAM AMP-dependent synthetase and ligase
FOC82_29600	COG2851	Citrate transporter
FOC82_29605	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_29615	COG3119	arylsulfatase activity
FOC82_29625	COG0601	transmembrane transport
FOC82_29630	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_29635	COG4172	Belongs to the ABC transporter superfamily
FOC82_29650	COG0583	DNA-binding transcription factor activity
FOC82_29655	COG0583	DNA-binding transcription factor activity
FOC82_29660	COG1804	L-carnitine dehydratase bile acid-inducible protein F
FOC82_29665	COG0604	alcohol dehydrogenase
FOC82_29675	COG3604	Transcriptional regulator
FOC82_29680	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
FOC82_29690	COG3813	Protein conserved in bacteria
FOC82_29695	COG2354	Protein conserved in bacteria
FOC82_29715	COG4172	Belongs to the ABC transporter superfamily
FOC82_29725	COG0747	negative chemotaxis
FOC82_29745	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC82_29765	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FOC82_29770	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FOC82_29775	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC82_29795	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC82_29805	COG1309	transcriptional regulator
FOC82_29825	COG1597	lipid kinase activity
FOC82_29830	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
FOC82_29855	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FOC82_29860	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FOC82_29865	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FOC82_29870	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FOC82_29880	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
FOC82_29890	COG1034	ATP synthesis coupled electron transport
FOC82_29895	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
FOC82_29900	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FOC82_29910	COG0713	ATP synthesis coupled electron transport
FOC82_29925	COG1007	ATP synthesis coupled electron transport
FOC82_29935	COG4774	siderophore transport
FOC82_29940	COG0560	Phosphoserine phosphatase
FOC82_29945	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FOC82_29950	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
FOC82_29955	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
FOC82_29960	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FOC82_29965	COG0450	alkyl hydroperoxide reductase
FOC82_29970	COG2205	protein histidine kinase activity
FOC82_29975	COG0745	RESPONSE REGULATOR receiver
FOC82_29985	COG1573	uracil-dna glycosylase
FOC82_29990	COG0477	Major facilitator Superfamily
FOC82_29995	COG1196	nuclear chromosome segregation
FOC82_30005	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FOC82_30010	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC82_30015	COG0271	Belongs to the BolA IbaG family
FOC82_30020	COG2917	probably involved in intracellular septation
FOC82_30025	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC82_30030	COG1122	ATPase activity
FOC82_30035	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FOC82_30040	COG1268	BioY protein
FOC82_30075	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC82_30110	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FOC82_30115	COG2878	Part of a membrane complex involved in electron transport
FOC82_30135	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
FOC82_30140	COG0251	oxidation-reduction process
FOC82_30145	COG0655	NAD(P)H dehydrogenase (quinone) activity
FOC82_30150	COG3228	Belongs to the MtfA family
FOC82_30155	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FOC82_30175	COG0159	tryptophan synthase activity
FOC82_30180	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FOC82_30185	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
FOC82_30195	COG2721	sulfolactate sulfo-lyase activity
FOC82_30210	COG1530	ribonuclease E activity
FOC82_30220	COG0546	phosphoglycolate phosphatase activity
FOC82_30225	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FOC82_30230	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
FOC82_30235	COG3023	N-Acetylmuramoyl-L-alanine amidase
FOC82_30245	COG0424	maF-like protein
FOC82_30250	COG1399	metal-binding, possibly nucleic acid-binding protein
FOC82_30255	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FOC82_30260	COG0416	fatty acid biosynthetic process
FOC82_30265	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC82_30270	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FOC82_30275	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_30280	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FOC82_30285	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FOC82_30305	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC82_30315	COG0681	Belongs to the peptidase S26 family
FOC82_30320	COG0571	ribonuclease III activity
FOC82_30325	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FOC82_30330	COG1381	Involved in DNA repair and RecF pathway recombination
FOC82_30340	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FOC82_30350	COG3181	Tripartite tricarboxylate transporter family receptor
FOC82_30380	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
FOC82_30405	COG0583	DNA-binding transcription factor activity
FOC82_30415	COG0791	NLP P60 protein
FOC82_30425	COG3193	protein, possibly involved in utilization of glycolate and propanediol
FOC82_30435	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC82_30440	COG0697	spore germination
FOC82_30445	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
FOC82_30455	COG1802	Transcriptional regulator
FOC82_30495	COG2153	protein acetylation
FOC82_30505	COG1446	asparaginase
FOC82_30510	COG4172	Belongs to the ABC transporter superfamily
FOC82_30515	COG0747	negative chemotaxis
FOC82_30525	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC82_30550	COG0504	CTP synthase activity
FOC82_30560	COG0148	phosphopyruvate hydratase activity
FOC82_30575	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
FOC82_30585	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC82_30630	COG0039	L-malate dehydrogenase activity
FOC82_30635	COG2188	Transcriptional regulator
FOC82_30640	COG2009	succinate dehydrogenase
FOC82_30645	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
FOC82_30650	COG1053	succinate dehydrogenase
FOC82_30655	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FOC82_30660	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
FOC82_30665	COG0372	Belongs to the citrate synthase family
FOC82_30715	COG0281	malic enzyme
FOC82_30715	COG0280	phosphate acetyltransferase
FOC82_30725	COG1297	OPT oligopeptide transporter protein
FOC82_30730	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC82_30755	COG0567	Dehydrogenase, E1 component
FOC82_30760	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC82_30765	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC82_30770	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FOC82_30775	COG1595	DNA-templated transcription, initiation
FOC82_30780	COG3712	iron ion homeostasis
FOC82_30785	COG4774	siderophore transport
FOC82_30815	COG1012	belongs to the aldehyde dehydrogenase family
FOC82_30820	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
FOC82_30825	COG0028	Belongs to the TPP enzyme family
FOC82_30830	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_30835	COG1414	Transcriptional regulator
FOC82_30845	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FOC82_30860	COG1116	anion transmembrane transporter activity
FOC82_30865	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC82_30870	COG2183	response to ionizing radiation
FOC82_30875	COG1199	ATP-dependent helicase activity
FOC82_30895	COG0564	pseudouridine synthase activity
FOC82_30905	COG3243	poly(R)-hydroxyalkanoic acid synthase
FOC82_30910	COG1028	Short-chain dehydrogenase reductase Sdr
FOC82_30915	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
FOC82_30930	COG0672	)-iron permease
FOC82_30955	COG3237	CsbD-like
FOC82_30960	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FOC82_30960	COG0189	ligase activity
FOC82_30965	COG0189	ligase activity
FOC82_30965	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FOC82_30970	COG1132	(ABC) transporter
FOC82_30985	COG2833	Protein of unknown function (DUF455)
FOC82_30990	COG2258	MOSC domain
FOC82_30995	COG2951	lytic endotransglycosylase activity
FOC82_31010	COG2015	COG2015, Alkyl sulfatase and related hydrolases
FOC82_31025	COG0582	viral genome integration into host DNA
FOC82_31260	COG0741	lytic transglycosylase activity