locus-tag class description APT56_00005 PF05000 RNA polymerase Rpb1, domain 4 APT56_00005 PF04998 RNA polymerase Rpb1, domain 5 APT56_00005 PF04997 RNA polymerase Rpb1, domain 1 APT56_00005 PF00623 RNA polymerase Rpb1, domain 2 APT56_00005 PF04983 RNA polymerase Rpb1, domain 3 APT56_00010 PF04563 RNA polymerase beta subunit APT56_00010 PF10385 RNA polymerase beta subunit external 1 domain APT56_00010 PF00562 RNA polymerase Rpb2, domain 6 APT56_00010 PF04560 RNA polymerase Rpb2, domain 7 APT56_00010 PF04561 RNA polymerase Rpb2, domain 2 APT56_00010 PF04565 RNA polymerase Rpb2, domain 3 APT56_00015 PF16320 Ribosomal protein L7/L12 dimerisation domain APT56_00015 PF00542 Ribosomal protein L7/L12 C-terminal domain APT56_00020 PF00466 Ribosomal protein L10 APT56_00025 PF00687 Ribosomal protein L1p/L10e family APT56_00030 PF03946 Ribosomal protein L11, N-terminal domain APT56_00030 PF00298 Ribosomal protein L11, RNA binding domain APT56_00035 PF00467 KOW motif APT56_00035 PF02357 Transcription termination factor nusG APT56_00040 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APT56_00050 PF03143 Elongation factor Tu C-terminal domain APT56_00050 PF00009 Elongation factor Tu GTP binding domain APT56_00050 PF03144 Elongation factor Tu domain 2 APT56_00070 PF00465 Iron-containing alcohol dehydrogenase APT56_00075 PF00171 Aldehyde dehydrogenase family APT56_00080 PF00120 Glutamine synthetase, catalytic domain APT56_00085 PF00459 Inositol monophosphatase family APT56_00095 PF00005 ABC transporter APT56_00095 PF08402 TOBE domain APT56_00105 PF00455 DeoR C terminal sensor domain APT56_00105 PF08220 DeoR-like helix-turn-helix domain APT56_00110 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00120 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_00130 PF03466 LysR substrate binding domain APT56_00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00135 PF17763 Glutaminase/Asparaginase C-terminal domain APT56_00135 PF00710 Asparaginase, N-terminal APT56_00140 PF02195 ParB-like nuclease domain APT56_00140 PF17762 HTH domain found in ParB protein APT56_00150 PF13614 AAA domain APT56_00155 PF02527 rRNA small subunit methyltransferase G APT56_00160 PF01134 Glucose inhibited division protein A APT56_00160 PF13932 GidA associated domain APT56_00165 PF00313 'Cold-shock' DNA-binding domain APT56_00170 PF05145 Transition state regulatory protein AbrB APT56_00175 PF00155 Aminotransferase class I and II APT56_00180 PF01970 Tripartite tricarboxylate transporter TctA family APT56_00195 PF00672 HAMP domain APT56_00195 PF00512 His Kinase A (phospho-acceptor) domain APT56_00195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_00200 PF00072 Response regulator receiver domain APT56_00200 PF00486 Transcriptional regulatory protein, C terminal APT56_00205 PF00654 Voltage gated chloride channel APT56_00215 PF12631 MnmE helical domain APT56_00215 PF01926 50S ribosome-binding GTPase APT56_00215 PF10396 GTP-binding protein TrmE N-terminus APT56_00220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_00225 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00230 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00230 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_00235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_00235 PF00005 ABC transporter APT56_00240 PF00005 ABC transporter APT56_00240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_00245 PF01546 Peptidase family M20/M25/M40 APT56_00245 PF07687 Peptidase dimerisation domain APT56_00250 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT56_00260 PF00291 Pyridoxal-phosphate dependent enzyme APT56_00265 PF06628 Catalase-related immune-responsive APT56_00265 PF00199 Catalase APT56_00270 PF02096 60Kd inner membrane protein APT56_00270 PF14849 YidC periplasmic domain APT56_00275 PF00825 Ribonuclease P APT56_00280 PF00468 Ribosomal protein L34 APT56_00285 PF08299 Bacterial dnaA protein helix-turn-helix APT56_00285 PF00308 Bacterial dnaA protein APT56_00285 PF11638 DnaA N-terminal domain APT56_00290 PF02767 DNA polymerase III beta subunit, central domain APT56_00290 PF02768 DNA polymerase III beta subunit, C-terminal domain APT56_00290 PF00712 DNA polymerase III beta subunit, N-terminal domain APT56_00295 PF01751 Toprim domain APT56_00295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_00295 PF18053 DNA gyrase B subunit insert domain APT56_00295 PF00986 DNA gyrase B subunit, carboxyl terminus APT56_00295 PF00204 DNA gyrase B APT56_00300 PF03466 LysR substrate binding domain APT56_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00310 PF07690 Major Facilitator Superfamily APT56_00315 PF02678 Pirin APT56_00315 PF17954 Quercetinase C-terminal cupin domain APT56_00325 PF07969 Amidohydrolase family APT56_00335 PF03466 LysR substrate binding domain APT56_00335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00340 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_00345 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00350 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00355 PF00005 ABC transporter APT56_00360 PF01212 Beta-eliminating lyase APT56_00365 PF00892 EamA-like transporter family APT56_00370 PF00708 Acylphosphatase APT56_00380 PF01070 FMN-dependent dehydrogenase APT56_00390 PF08402 TOBE domain APT56_00390 PF00005 ABC transporter APT56_00395 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00400 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00410 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_00410 PF04324 BFD-like [2Fe-2S] binding domain APT56_00415 PF01266 FAD dependent oxidoreductase APT56_00425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_00435 PF03466 LysR substrate binding domain APT56_00435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00440 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00445 PF05378 Hydantoinase/oxoprolinase N-terminal region APT56_00445 PF01968 Hydantoinase/oxoprolinase APT56_00455 PF00392 Bacterial regulatory proteins, gntR family APT56_00465 PF08402 TOBE domain APT56_00465 PF00005 ABC transporter APT56_00470 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00475 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00480 PF01266 FAD dependent oxidoreductase APT56_00490 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_00490 PF04324 BFD-like [2Fe-2S] binding domain APT56_00500 PF01042 Endoribonuclease L-PSP APT56_00505 PF08479 POTRA domain, ShlB-type APT56_00505 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_00505 PF17287 POTRA domain APT56_00510 PF04829 Pre-toxin domain with VENN motif APT56_00510 PF13018 Extended Signal Peptide of Type V secretion system APT56_00510 PF05860 haemagglutination activity domain APT56_00510 PF13332 Hemagglutinin repeat APT56_00515 PF05860 haemagglutination activity domain APT56_00515 PF15605 Bacterial toxin 28 APT56_00515 PF04829 Pre-toxin domain with VENN motif APT56_00515 PF13332 Hemagglutinin repeat APT56_00530 PF07969 Amidohydrolase family APT56_00550 PF02608 ABC transporter substrate-binding protein PnrA-like APT56_00560 PF08546 Ketopantoate reductase PanE/ApbA C terminal APT56_00560 PF02558 Ketopantoate reductase PanE/ApbA APT56_00575 PF01613 Flavin reductase like domain APT56_00585 PF00440 Bacterial regulatory proteins, tetR family APT56_00590 PF07690 Major Facilitator Superfamily APT56_00595 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APT56_00605 PF01062 Bestrophin, RFP-TM, chloride channel APT56_00610 PF01037 Lrp/AsnC ligand binding domain APT56_00615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_00615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_00615 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_00625 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00630 PF00005 ABC transporter APT56_00640 PF01751 Toprim domain APT56_00640 PF01131 DNA topoisomerase APT56_00650 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT56_00655 PF04361 Protein of unknown function (DUF494) APT56_00665 PF16868 NMT1-like family APT56_00670 PF14031 Putative serine dehydratase domain APT56_00670 PF01168 Alanine racemase, N-terminal domain APT56_00675 PF00005 ABC transporter APT56_00680 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00685 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00690 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_00695 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00700 PF00202 Aminotransferase class-III APT56_00730 PF12833 Helix-turn-helix domain APT56_00730 PF01965 DJ-1/PfpI family APT56_00750 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system APT56_00755 PF04829 Pre-toxin domain with VENN motif APT56_00755 PF13332 Hemagglutinin repeat APT56_00755 PF04829 Pre-toxin domain with VENN motif APT56_00755 PF05860 haemagglutination activity domain APT56_00755 PF05860 haemagglutination activity domain APT56_00755 PF13332 Hemagglutinin repeat APT56_00765 PF06803 Protein of unknown function (DUF1232) APT56_00775 PF01810 LysE type translocator APT56_00795 PF00155 Aminotransferase class I and II APT56_00795 PF00392 Bacterial regulatory proteins, gntR family APT56_00810 PF05977 Transmembrane secretion effector APT56_00815 PF00364 Biotin-requiring enzyme APT56_00815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_00815 PF00289 Biotin carboxylase, N-terminal domain APT56_00815 PF02785 Biotin carboxylase C-terminal domain APT56_00820 PF01039 Carboxyl transferase domain APT56_00825 PF00108 Thiolase, N-terminal domain APT56_00825 PF02803 Thiolase, C-terminal domain APT56_00830 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) APT56_00835 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_00835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_00835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_00840 PF07687 Peptidase dimerisation domain APT56_00840 PF01546 Peptidase family M20/M25/M40 APT56_00845 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00855 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APT56_00860 PF09278 MerR, DNA binding APT56_00860 PF00376 MerR family regulatory protein APT56_00870 PF01810 LysE type translocator APT56_00880 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_00885 PF00561 alpha/beta hydrolase fold APT56_00895 PF00085 Thioredoxin APT56_00895 PF01323 DSBA-like thioredoxin domain APT56_00905 PF03485 Arginyl tRNA synthetase N terminal domain APT56_00905 PF05746 DALR anticodon binding domain APT56_00905 PF00750 tRNA synthetases class I (R) APT56_00920 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00925 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00930 PF13416 Bacterial extracellular solute-binding protein APT56_00935 PF00005 ABC transporter APT56_00935 PF17912 MalK OB fold domain APT56_00940 PF00149 Calcineurin-like phosphoesterase APT56_00945 PF00356 Bacterial regulatory proteins, lacI family APT56_00950 PF01425 Amidase APT56_00955 PF08502 LeuA allosteric (dimerisation) domain APT56_00955 PF00682 HMGL-like APT56_00960 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00970 PF00309 Sigma-54 factor, Activator interacting domain (AID) APT56_00970 PF04963 Sigma-54 factor, core binding domain APT56_00970 PF04552 Sigma-54, DNA binding domain APT56_00980 PF03466 LysR substrate binding domain APT56_00980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00990 PF00210 Ferritin-like domain APT56_01000 PF00009 Elongation factor Tu GTP binding domain APT56_01000 PF03144 Elongation factor Tu domain 2 APT56_01000 PF16658 Class II release factor RF3, C-terminal domain APT56_01005 PF01810 LysE type translocator APT56_01010 PF00270 DEAD/DEAH box helicase APT56_01010 PF00271 Helicase conserved C-terminal domain APT56_01015 PF06097 Bacterial protein of unknown function (DUF945) APT56_01020 PF06097 Bacterial protein of unknown function (DUF945) APT56_01025 PF01979 Amidohydrolase family APT56_01030 PF00005 ABC transporter APT56_01030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_01035 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01035 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_01045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_01050 PF01926 50S ribosome-binding GTPase APT56_01060 PF06445 GyrI-like small molecule binding domain APT56_01060 PF12833 Helix-turn-helix domain APT56_01070 PF00266 Aminotransferase class-V APT56_01080 PF03466 LysR substrate binding domain APT56_01080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01095 PF02447 GntP family permease APT56_01100 PF01810 LysE type translocator APT56_01125 PF04386 Stringent starvation protein B APT56_01130 PF00043 Glutathione S-transferase, C-terminal domain APT56_01130 PF02798 Glutathione S-transferase, N-terminal domain APT56_01135 PF02167 Cytochrome C1 family APT56_01140 PF00033 Cytochrome b/b6/petB APT56_01140 PF00032 Cytochrome b(C-terminal)/b6/petD APT56_01145 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APT56_01145 PF00355 Rieske [2Fe-2S] domain APT56_01150 PF01741 Large-conductance mechanosensitive channel, MscL APT56_01155 PF01784 NIF3 (NGG1p interacting factor 3) APT56_01160 PF00595 PDZ domain APT56_01170 PF00902 Sec-independent protein translocase protein (TatC) APT56_01175 PF02416 mttA/Hcf106 family APT56_01180 PF02416 mttA/Hcf106 family APT56_01185 PF01230 HIT domain APT56_01190 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APT56_01195 PF01502 Phosphoribosyl-AMP cyclohydrolase APT56_01200 PF00977 Histidine biosynthesis protein APT56_01205 PF00977 Histidine biosynthesis protein APT56_01210 PF00117 Glutamine amidotransferase class-I APT56_01215 PF00475 Imidazoleglycerol-phosphate dehydratase APT56_01220 PF00155 Aminotransferase class I and II APT56_01225 PF00815 Histidinol dehydrogenase APT56_01230 PF01634 ATP phosphoribosyltransferase APT56_01235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT56_01245 PF01061 ABC-2 type transporter APT56_01250 PF00005 ABC transporter APT56_01260 PF04333 MlaA lipoprotein APT56_01265 PF02470 MlaD protein APT56_01270 PF02405 Permease MlaE APT56_01275 PF00005 ABC transporter APT56_01280 PF03060 Nitronate monooxygenase APT56_01285 PF03401 Tripartite tricarboxylate transporter family receptor APT56_01290 PF06779 Uncharacterised MFS-type transporter YbfB APT56_01295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01295 PF03466 LysR substrate binding domain APT56_01300 PF03922 OmpW family APT56_01305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01305 PF03466 LysR substrate binding domain APT56_01310 PF03746 LamB/YcsF family APT56_01315 PF00364 Biotin-requiring enzyme APT56_01320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_01320 PF02785 Biotin carboxylase C-terminal domain APT56_01320 PF00289 Biotin carboxylase, N-terminal domain APT56_01330 PF02626 Carboxyltransferase domain, subdomain A and B APT56_01345 PF02417 Chromate transporter APT56_01350 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_01350 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT56_01355 PF01493 GXGXG motif APT56_01355 PF04898 Glutamate synthase central domain APT56_01355 PF00310 Glutamine amidotransferases class-II APT56_01355 PF01645 Conserved region in glutamate synthase APT56_01365 PF00756 Putative esterase APT56_01375 PF04545 Sigma-70, region 4 APT56_01375 PF00140 Sigma-70 factor, region 1.2 APT56_01375 PF04542 Sigma-70 region 2 APT56_01380 PF00149 Calcineurin-like phosphoesterase APT56_01385 PF00999 Sodium/hydrogen exchanger family APT56_01395 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APT56_01395 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT56_01400 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT56_01410 PF00510 Cytochrome c oxidase subunit III APT56_01430 PF02628 Cytochrome oxidase assembly protein APT56_01435 PF01040 UbiA prenyltransferase family APT56_01440 PF02630 SCO1/SenC APT56_01460 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_01460 PF14602 Hexapeptide repeat of succinyl-transferase APT56_01460 PF12804 MobA-like NTP transferase domain APT56_01465 PF07690 Major Facilitator Superfamily APT56_01470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT56_01470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT56_01470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT56_01485 PF01380 SIS domain APT56_01490 PF00583 Acetyltransferase (GNAT) family APT56_01505 PF01717 Cobalamin-independent synthase, Catalytic domain APT56_01505 PF08267 Cobalamin-independent synthase, N-terminal domain APT56_01510 PF01613 Flavin reductase like domain APT56_01530 PF17284 Spermidine synthase tetramerisation domain APT56_01540 PF00890 FAD binding domain APT56_01540 PF02910 Fumarate reductase flavoprotein C-term APT56_01545 PF02445 Quinolinate synthetase A protein APT56_01550 PF07690 Major Facilitator Superfamily APT56_01555 PF03466 LysR substrate binding domain APT56_01555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01560 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT56_01565 PF00563 EAL domain APT56_01565 PF00990 Diguanylate cyclase, GGDEF domain APT56_01565 PF08447 PAS fold APT56_01565 PF08448 PAS fold APT56_01570 PF01926 50S ribosome-binding GTPase APT56_01575 PF02548 Ketopantoate hydroxymethyltransferase APT56_01580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01580 PF03466 LysR substrate binding domain APT56_01585 PF00474 Sodium:solute symporter family APT56_01590 PF00491 Arginase family APT56_01595 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase APT56_01600 PF00535 Glycosyl transferase family 2 APT56_01605 PF00873 AcrB/AcrD/AcrF family APT56_01610 PF00529 HlyD membrane-fusion protein of T1SS APT56_01610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_01615 PF02321 Outer membrane efflux protein APT56_01625 PF00486 Transcriptional regulatory protein, C terminal APT56_01625 PF00072 Response regulator receiver domain APT56_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_01630 PF00672 HAMP domain APT56_01630 PF00512 His Kinase A (phospho-acceptor) domain APT56_01640 PF02872 5'-nucleotidase, C-terminal domain APT56_01640 PF00149 Calcineurin-like phosphoesterase APT56_01645 PF00107 Zinc-binding dehydrogenase APT56_01645 PF08240 Alcohol dehydrogenase GroES-like domain APT56_01650 PF02583 Metal-sensitive transcriptional repressor APT56_01655 PF00392 Bacterial regulatory proteins, gntR family APT56_01655 PF07702 UTRA domain APT56_01660 PF05962 HutD APT56_01665 PF01175 Urocanase Rossmann-like domain APT56_01665 PF17392 Urocanase C-terminal domain APT56_01665 PF17391 Urocanase N-terminal domain APT56_01670 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT56_01675 PF00221 Aromatic amino acid lyase APT56_01680 PF00324 Amino acid permease APT56_01685 PF01979 Amidohydrolase family APT56_01690 PF00672 HAMP domain APT56_01690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_01690 PF02203 Tar ligand binding domain homologue APT56_01695 PF07690 Major Facilitator Superfamily APT56_01710 PF00577 Outer membrane usher protein APT56_01710 PF13954 PapC N-terminal domain APT56_01710 PF13953 PapC C-terminal domain APT56_01770 PF00392 Bacterial regulatory proteins, gntR family APT56_01770 PF07729 FCD domain APT56_01785 PF00171 Aldehyde dehydrogenase family APT56_01795 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_01795 PF00970 Oxidoreductase FAD-binding domain APT56_01795 PF00175 Oxidoreductase NAD-binding domain APT56_01800 PF00582 Universal stress protein family APT56_01805 PF00005 ABC transporter APT56_01805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_01810 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01810 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_01815 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_01830 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT56_01830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_01835 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT56_01835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_01840 PF00296 Luciferase-like monooxygenase APT56_01845 PF03180 NLPA lipoprotein APT56_01850 PF03358 NADPH-dependent FMN reductase APT56_01855 PF09084 NMT1/THI5 like APT56_01860 PF00296 Luciferase-like monooxygenase APT56_01865 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_01870 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT56_01875 PF09383 NIL domain APT56_01875 PF00005 ABC transporter APT56_01880 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01885 PF03180 NLPA lipoprotein APT56_01890 PF00005 ABC transporter APT56_01895 PF03459 TOBE domain APT56_01915 PF03061 Thioesterase superfamily APT56_01925 PF01568 Molydopterin dinucleotide binding domain APT56_01925 PF00384 Molybdopterin oxidoreductase APT56_01925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT56_01930 PF01568 Molydopterin dinucleotide binding domain APT56_01930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT56_01930 PF00384 Molybdopterin oxidoreductase APT56_01935 PF13247 4Fe-4S dicluster domain APT56_01935 PF09163 Formate dehydrogenase N, transmembrane APT56_01935 PF12800 4Fe-4S binding domain APT56_01940 PF01292 Prokaryotic cytochrome b561 APT56_01945 PF04216 Protein involved in formate dehydrogenase formation APT56_01950 PF03841 L-seryl-tRNA selenium transferase APT56_01950 PF12390 Selenocysteine synthase N terminal APT56_01955 PF09107 Elongation factor SelB, winged helix APT56_01955 PF09106 Elongation factor SelB, winged helix APT56_01955 PF03144 Elongation factor Tu domain 2 APT56_01955 PF00009 Elongation factor Tu GTP binding domain APT56_01965 PF00535 Glycosyl transferase family 2 APT56_01970 PF00578 AhpC/TSA family APT56_01975 PF01841 Transglutaminase-like superfamily APT56_01980 PF00586 AIR synthase related protein, N-terminal domain APT56_01980 PF02769 AIR synthase related protein, C-terminal domain APT56_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01990 PF03466 LysR substrate binding domain APT56_02000 PF01323 DSBA-like thioredoxin domain APT56_02010 PF00171 Aldehyde dehydrogenase family APT56_02015 PF01590 GAF domain APT56_02015 PF02954 Bacterial regulatory protein, Fis family APT56_02015 PF00158 Sigma-54 interaction domain APT56_02020 PF00218 Indole-3-glycerol phosphate synthase APT56_02025 PF02885 Glycosyl transferase family, helical bundle domain APT56_02025 PF00591 Glycosyl transferase family, a/b domain APT56_02030 PF00117 Glutamine amidotransferase class-I APT56_02035 PF04715 Anthranilate synthase component I, N terminal region APT56_02035 PF00425 chorismate binding enzyme APT56_02040 PF13419 Haloacid dehalogenase-like hydrolase APT56_02050 PF04379 ApaG domain APT56_02060 PF01494 FAD binding domain APT56_02065 PF10411 Disulfide bond isomerase protein N-terminus APT56_02065 PF13098 Thioredoxin-like domain APT56_02070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_02070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_02070 PF01842 ACT domain APT56_02075 PF01171 PP-loop family APT56_02085 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_02090 PF12146 Serine aminopeptidase, S33 APT56_02095 PF03466 LysR substrate binding domain APT56_02095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02100 PF17645 Arylmalonate decarboxylase APT56_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02105 PF03466 LysR substrate binding domain APT56_02110 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02115 PF01144 Coenzyme A transferase APT56_02120 PF01144 Coenzyme A transferase APT56_02125 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02130 PF13180 PDZ domain APT56_02135 PF00378 Enoyl-CoA hydratase/isomerase APT56_02150 PF00119 ATP synthase A chain APT56_02155 PF00137 ATP synthase subunit C APT56_02160 PF00430 ATP synthase B/B' CF(0) APT56_02165 PF00213 ATP synthase delta (OSCP) subunit APT56_02170 PF00306 ATP synthase alpha/beta chain, C terminal domain APT56_02170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_02170 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT56_02175 PF00231 ATP synthase APT56_02180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_02180 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT56_02185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APT56_02195 PF01208 Uroporphyrinogen decarboxylase (URO-D) APT56_02200 PF00270 DEAD/DEAH box helicase APT56_02200 PF17764 3′ DNA-binding domain (3′BD) APT56_02200 PF18074 Primosomal protein N C-terminal domain APT56_02200 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APT56_02200 PF00271 Helicase conserved C-terminal domain APT56_02205 PF13361 UvrD-like helicase C-terminal domain APT56_02205 PF00580 UvrD/REP helicase N-terminal domain APT56_02210 PF12833 Helix-turn-helix domain APT56_02215 PF01212 Beta-eliminating lyase APT56_02220 PF01380 SIS domain APT56_02225 PF00106 short chain dehydrogenase APT56_02230 PF01965 DJ-1/PfpI family APT56_02230 PF12833 Helix-turn-helix domain APT56_02235 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle APT56_02235 PF14602 Hexapeptide repeat of succinyl-transferase APT56_02240 PF03976 Polyphosphate kinase 2 (PPK2) APT56_02245 PF07687 Peptidase dimerisation domain APT56_02245 PF01546 Peptidase family M20/M25/M40 APT56_02255 PF00005 ABC transporter APT56_02255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_02260 PF00005 ABC transporter APT56_02260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_02265 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_02265 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02270 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_02280 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APT56_02290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02290 PF03466 LysR substrate binding domain APT56_02295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_02305 PF01256 Carbohydrate kinase APT56_02310 PF00378 Enoyl-CoA hydratase/isomerase APT56_02315 PF00378 Enoyl-CoA hydratase/isomerase APT56_02320 PF03060 Nitronate monooxygenase APT56_02325 PF00440 Bacterial regulatory proteins, tetR family APT56_02335 PF02515 CoA-transferase family III APT56_02340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_02340 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain APT56_02340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_02345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_02365 PF13609 Gram-negative porin APT56_02370 PF13609 Gram-negative porin APT56_02380 PF07883 Cupin domain APT56_02385 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_02395 PF02653 Branched-chain amino acid transport system / permease component APT56_02400 PF02653 Branched-chain amino acid transport system / permease component APT56_02400 PF11862 Domain of unknown function (DUF3382) APT56_02405 PF00005 ABC transporter APT56_02410 PF00005 ABC transporter APT56_02415 PF00795 Carbon-nitrogen hydrolase APT56_02420 PF00392 Bacterial regulatory proteins, gntR family APT56_02420 PF07729 FCD domain APT56_02430 PF03466 LysR substrate binding domain APT56_02430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02435 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02440 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APT56_02450 PF04262 Glutamate-cysteine ligase APT56_02455 PF00561 alpha/beta hydrolase fold APT56_02485 PF02615 Malate/L-lactate dehydrogenase APT56_02490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_02490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_02495 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02500 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus APT56_02505 PF08666 SAF domain APT56_02510 PF00392 Bacterial regulatory proteins, gntR family APT56_02510 PF07702 UTRA domain APT56_02515 PF00561 alpha/beta hydrolase fold APT56_02520 PF07021 Methionine biosynthesis protein MetW APT56_02520 PF00561 alpha/beta hydrolase fold APT56_02525 PF07690 Major Facilitator Superfamily APT56_02535 PF03458 UPF0126 domain APT56_02540 PF00392 Bacterial regulatory proteins, gntR family APT56_02540 PF07729 FCD domain APT56_02545 PF03746 LamB/YcsF family APT56_02550 PF02626 Carboxyltransferase domain, subdomain A and B APT56_02555 PF02682 Carboxyltransferase domain, subdomain C and D APT56_02565 PF03466 LysR substrate binding domain APT56_02565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02575 PF00583 Acetyltransferase (GNAT) family APT56_02585 PF13333 Integrase core domain APT56_02585 PF13276 HTH-like domain APT56_02585 PF00665 Integrase core domain APT56_02590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_02590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_02600 PF05275 Copper resistance protein B precursor (CopB) APT56_02605 PF07732 Multicopper oxidase APT56_02605 PF07731 Multicopper oxidase APT56_02605 PF00394 Multicopper oxidase APT56_02615 PF00512 His Kinase A (phospho-acceptor) domain APT56_02615 PF00672 HAMP domain APT56_02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_02620 PF00072 Response regulator receiver domain APT56_02620 PF00486 Transcriptional regulatory protein, C terminal APT56_02625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_02625 PF00512 His Kinase A (phospho-acceptor) domain APT56_02625 PF11808 Phosphate regulon sensor protein PhoR APT56_02625 PF00989 PAS fold APT56_02630 PF00072 Response regulator receiver domain APT56_02630 PF00486 Transcriptional regulatory protein, C terminal APT56_02635 PF01209 ubiE/COQ5 methyltransferase family APT56_02650 PF03109 ABC1 family APT56_02660 PF01467 Cytidylyltransferase-like APT56_02665 PF02321 Outer membrane efflux protein APT56_02675 PF08543 Phosphomethylpyrimidine kinase APT56_02680 PF05690 Thiazole biosynthesis protein ThiG APT56_02685 PF01497 Periplasmic binding protein APT56_02690 PF07715 TonB-dependent Receptor Plug Domain APT56_02690 PF00593 TonB dependent receptor APT56_02695 PF02310 B12 binding domain APT56_02695 PF02965 Vitamin B12 dependent methionine synthase, activation domain APT56_02695 PF02574 Homocysteine S-methyltransferase APT56_02695 PF02607 B12 binding domain APT56_02695 PF00809 Pterin binding enzyme APT56_02700 PF07729 FCD domain APT56_02700 PF00392 Bacterial regulatory proteins, gntR family APT56_02715 PF08240 Alcohol dehydrogenase GroES-like domain APT56_02715 PF00107 Zinc-binding dehydrogenase APT56_02720 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02725 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02730 PF00005 ABC transporter APT56_02735 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_02735 PF13378 Enolase C-terminal domain-like APT56_02740 PF08125 Mannitol dehydrogenase C-terminal domain APT56_02740 PF01232 Mannitol dehydrogenase Rossmann domain APT56_02745 PF01425 Amidase APT56_02755 PF10576 Iron-sulfur binding domain of endonuclease III APT56_02755 PF00633 Helix-hairpin-helix motif APT56_02755 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_02755 PF14815 NUDIX domain APT56_02770 PF01965 DJ-1/PfpI family APT56_02770 PF12833 Helix-turn-helix domain APT56_02775 PF03975 CheD chemotactic sensory transduction APT56_02780 PF18075 FtsX extracellular domain APT56_02785 PF00005 ABC transporter APT56_02790 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_02795 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02800 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02805 PF00005 ABC transporter APT56_02810 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02825 PF01494 FAD binding domain APT56_02835 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02840 PF00800 Prephenate dehydratase APT56_02840 PF01817 Chorismate mutase type II APT56_02840 PF01842 ACT domain APT56_02845 PF13417 Glutathione S-transferase, N-terminal domain APT56_02850 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_02855 PF07883 Cupin domain APT56_02860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02860 PF03466 LysR substrate binding domain APT56_02870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT56_02870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT56_02875 PF07690 Major Facilitator Superfamily APT56_02885 PF02616 Segregation and condensation protein ScpA APT56_02890 PF02569 Pantoate-beta-alanine ligase APT56_02895 PF00072 Response regulator receiver domain APT56_02895 PF00196 Bacterial regulatory proteins, luxR family APT56_02905 PF06750 Bacterial Peptidase A24 N-terminal domain APT56_02905 PF01478 Type IV leader peptidase family APT56_02910 PF01121 Dephospho-CoA kinase APT56_02915 PF07072 Cell division protein APT56_02920 PF13533 Biotin-lipoyl like APT56_02925 PF00873 AcrB/AcrD/AcrF family APT56_02930 PF00873 AcrB/AcrD/AcrF family APT56_02935 PF02321 Outer membrane efflux protein APT56_02940 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02945 PF01266 FAD dependent oxidoreductase APT56_02950 PF07969 Amidohydrolase family APT56_02965 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02975 PF17912 MalK OB fold domain APT56_02975 PF00005 ABC transporter APT56_02985 PF00293 NUDIX domain APT56_02995 PF01960 ArgJ family APT56_03015 PF02653 Branched-chain amino acid transport system / permease component APT56_03020 PF02653 Branched-chain amino acid transport system / permease component APT56_03020 PF11862 Domain of unknown function (DUF3382) APT56_03025 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_03025 PF00005 ABC transporter APT56_03030 PF00005 ABC transporter APT56_03045 PF09345 Domain of unknown function (DUF1987) APT56_03050 PF08448 PAS fold APT56_03050 PF00990 Diguanylate cyclase, GGDEF domain APT56_03055 PF00990 Diguanylate cyclase, GGDEF domain APT56_03055 PF03707 Bacterial signalling protein N terminal repeat APT56_03055 PF00563 EAL domain APT56_03060 PF01494 FAD binding domain APT56_03070 PF00378 Enoyl-CoA hydratase/isomerase APT56_03075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_03075 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_03075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_03080 PF13193 AMP-binding enzyme C-terminal domain APT56_03080 PF00501 AMP-binding enzyme APT56_03105 PF01738 Dienelactone hydrolase family APT56_03110 PF00355 Rieske [2Fe-2S] domain APT56_03110 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_03115 PF00866 Ring hydroxylating beta subunit APT56_03120 PF00857 Isochorismatase family APT56_03135 PF01464 Transglycosylase SLT domain APT56_03140 PF00202 Aminotransferase class-III APT56_03145 PF02581 Thiamine monophosphate synthase APT56_03150 PF08543 Phosphomethylpyrimidine kinase APT56_03155 PF00301 Rubredoxin APT56_03160 PF02622 Uncharacterized ACR, COG1678 APT56_03165 PF03652 Holliday junction resolvase APT56_03170 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT56_03170 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT56_03175 PF01979 Amidohydrolase family APT56_03180 PF01553 Acyltransferase APT56_03185 PF00005 ABC transporter APT56_03190 PF00528 Binding-protein-dependent transport system inner membrane component APT56_03195 PF00528 Binding-protein-dependent transport system inner membrane component APT56_03200 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_03210 PF03737 Aldolase/RraA APT56_03220 PF00149 Calcineurin-like phosphoesterase APT56_03230 PF00912 Transglycosylase APT56_03235 PF01488 Shikimate / quinate 5-dehydrogenase APT56_03235 PF08501 Shikimate dehydrogenase substrate binding domain APT56_03235 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APT56_03245 PF00005 ABC transporter APT56_03245 PF08402 TOBE domain APT56_03250 PF00528 Binding-protein-dependent transport system inner membrane component APT56_03260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_03260 PF00512 His Kinase A (phospho-acceptor) domain APT56_03260 PF08521 Two-component sensor kinase N-terminal APT56_03265 PF00486 Transcriptional regulatory protein, C terminal APT56_03265 PF00072 Response regulator receiver domain APT56_03270 PF00773 RNB domain APT56_03275 PF05728 Uncharacterised protein family (UPF0227) APT56_03280 PF08245 Mur ligase middle domain APT56_03280 PF02875 Mur ligase family, glutamate ligase domain APT56_03280 PF01225 Mur ligase family, catalytic domain APT56_03285 PF08534 Redoxin APT56_03290 PF01220 Dehydroquinase class II APT56_03295 PF00364 Biotin-requiring enzyme APT56_03300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_03300 PF00289 Biotin carboxylase, N-terminal domain APT56_03300 PF02785 Biotin carboxylase C-terminal domain APT56_03315 PF01467 Cytidylyltransferase-like APT56_03315 PF00294 pfkB family carbohydrate kinase APT56_03340 PF03062 MBOAT, membrane-bound O-acyltransferase family APT56_03345 PF13193 AMP-binding enzyme C-terminal domain APT56_03345 PF00501 AMP-binding enzyme APT56_03360 PF00268 Ribonucleotide reductase, small chain APT56_03365 PF00317 Ribonucleotide reductase, all-alpha domain APT56_03365 PF02867 Ribonucleotide reductase, barrel domain APT56_03365 PF03477 ATP cone domain APT56_03375 PF01037 Lrp/AsnC ligand binding domain APT56_03380 PF03401 Tripartite tricarboxylate transporter family receptor APT56_03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03390 PF03466 LysR substrate binding domain APT56_03405 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT56_03410 PF13607 Succinyl-CoA ligase like flavodoxin domain APT56_03410 PF00583 Acetyltransferase (GNAT) family APT56_03410 PF13380 CoA binding domain APT56_03415 PF00857 Isochorismatase family APT56_03420 PF00528 Binding-protein-dependent transport system inner membrane component APT56_03425 PF00005 ABC transporter APT56_03440 PF04751 Protein of unknown function (DUF615) APT56_03445 PF01523 Putative modulator of DNA gyrase APT56_03450 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_03455 PF13458 Periplasmic binding protein APT56_03460 PF02653 Branched-chain amino acid transport system / permease component APT56_03465 PF02653 Branched-chain amino acid transport system / permease component APT56_03465 PF11862 Domain of unknown function (DUF3382) APT56_03470 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_03470 PF00005 ABC transporter APT56_03475 PF00005 ABC transporter APT56_03480 PF00572 Ribosomal protein L13 APT56_03485 PF00380 Ribosomal protein S9/S16 APT56_03490 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT56_03490 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT56_03500 PF01521 Iron-sulphur cluster biosynthesis APT56_03505 PF03702 Anhydro-N-acetylmuramic acid kinase APT56_03515 PF01479 S4 domain APT56_03515 PF00579 tRNA synthetases class I (W and Y) APT56_03525 PF01810 LysE type translocator APT56_03530 PF00464 Serine hydroxymethyltransferase APT56_03535 PF03477 ATP cone domain APT56_03550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT56_03550 PF01872 RibD C-terminal domain APT56_03565 PF08298 PrkA AAA domain APT56_03565 PF06798 PrkA serine protein kinase C-terminal domain APT56_03570 PF04285 Protein of unknown function (DUF444) APT56_03575 PF04293 SpoVR like protein APT56_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03585 PF03466 LysR substrate binding domain APT56_03590 PF14552 Tautomerase enzyme APT56_03600 PF00583 Acetyltransferase (GNAT) family APT56_03610 PF01323 DSBA-like thioredoxin domain APT56_03620 PF03401 Tripartite tricarboxylate transporter family receptor APT56_03625 PF03466 LysR substrate binding domain APT56_03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03665 PF00771 FHIPEP family APT56_03740 PF01514 Secretory protein of YscJ/FliF family APT56_03750 PF02108 Flagellar assembly protein FliH APT56_03755 PF18269 T3SS EscN ATPase C-terminal domain APT56_03755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_03755 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT56_03770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APT56_03775 PF00813 FliP family APT56_03780 PF01313 Bacterial export proteins, family 3 APT56_03785 PF01311 Bacterial export proteins, family 1 APT56_03790 PF01312 FlhB HrpN YscU SpaS Family APT56_03805 PF04542 Sigma-70 region 2 APT56_03805 PF08281 Sigma-70, region 4 APT56_03820 PF00672 HAMP domain APT56_03820 PF07228 Stage II sporulation protein E (SpoIIE) APT56_03830 PF01168 Alanine racemase, N-terminal domain APT56_03830 PF00842 Alanine racemase, C-terminal domain APT56_03835 PF13581 Histidine kinase-like ATPase domain APT56_03840 PF01740 STAS domain APT56_03855 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APT56_03855 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APT56_03860 PF03401 Tripartite tricarboxylate transporter family receptor APT56_03880 PF01476 LysM domain APT56_03880 PF01464 Transglycosylase SLT domain APT56_03885 PF16123 Hydroxyacylglutathione hydrolase C-terminus APT56_03885 PF00753 Metallo-beta-lactamase superfamily APT56_03890 PF08241 Methyltransferase domain APT56_03895 PF00075 RNase H APT56_03900 PF13533 Biotin-lipoyl like APT56_03905 PF00873 AcrB/AcrD/AcrF family APT56_03910 PF00929 Exonuclease APT56_03920 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 APT56_03935 PF03616 Sodium/glutamate symporter APT56_03945 PF00535 Glycosyl transferase family 2 APT56_03950 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase APT56_03965 PF03466 LysR substrate binding domain APT56_03965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03985 PF02653 Branched-chain amino acid transport system / permease component APT56_03995 PF00005 ABC transporter APT56_04000 PF00005 ABC transporter APT56_04000 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_04005 PF00701 Dihydrodipicolinate synthetase family APT56_04015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04015 PF03466 LysR substrate binding domain APT56_04020 PF03788 LrgA family APT56_04030 PF01810 LysE type translocator APT56_04035 PF00892 EamA-like transporter family APT56_04040 PF00392 Bacterial regulatory proteins, gntR family APT56_04040 PF00155 Aminotransferase class I and II APT56_04050 PF00582 Universal stress protein family APT56_04055 PF03764 Elongation factor G, domain IV APT56_04055 PF14492 Elongation Factor G, domain II APT56_04055 PF00679 Elongation factor G C-terminus APT56_04055 PF03144 Elongation factor Tu domain 2 APT56_04055 PF00009 Elongation factor Tu GTP binding domain APT56_04065 PF01037 Lrp/AsnC ligand binding domain APT56_04080 PF00005 ABC transporter APT56_04085 PF01032 FecCD transport family APT56_04095 PF00691 OmpA family APT56_04100 PF04052 TolB amino-terminal domain APT56_04100 PF07676 WD40-like Beta Propeller Repeat APT56_04110 PF02472 Biopolymer transport protein ExbD/TolR APT56_04115 PF01618 MotA/TolQ/ExbB proton channel family APT56_04120 PF03061 Thioesterase superfamily APT56_04125 PF04073 Aminoacyl-tRNA editing domain APT56_04125 PF03129 Anticodon binding domain APT56_04125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT56_04130 PF00293 NUDIX domain APT56_04135 PF00486 Transcriptional regulatory protein, C terminal APT56_04135 PF00072 Response regulator receiver domain APT56_04140 PF00512 His Kinase A (phospho-acceptor) domain APT56_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_04150 PF01970 Tripartite tricarboxylate transporter TctA family APT56_04155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_04160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04160 PF03466 LysR substrate binding domain APT56_04165 PF02525 Flavodoxin-like fold APT56_04170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_04170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_04180 PF01970 Tripartite tricarboxylate transporter TctA family APT56_04210 PF01790 Prolipoprotein diacylglyceryl transferase APT56_04215 PF00920 Dehydratase family APT56_04220 PF00034 Cytochrome c APT56_04225 PF01625 Peptide methionine sulfoxide reductase APT56_04230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_04235 PF01037 Lrp/AsnC ligand binding domain APT56_04280 PF07687 Peptidase dimerisation domain APT56_04280 PF01546 Peptidase family M20/M25/M40 APT56_04285 PF01979 Amidohydrolase family APT56_04300 PF02381 MraZ protein, putative antitoxin-like APT56_04305 PF01795 MraW methylase family APT56_04310 PF04999 Cell division protein FtsL APT56_04315 PF03717 Penicillin-binding Protein dimerisation domain APT56_04315 PF00905 Penicillin binding protein transpeptidase domain APT56_04320 PF02875 Mur ligase family, glutamate ligase domain APT56_04320 PF08245 Mur ligase middle domain APT56_04325 PF00953 Glycosyl transferase family 4 APT56_04330 PF08245 Mur ligase middle domain APT56_04330 PF02875 Mur ligase family, glutamate ligase domain APT56_04335 PF01098 Cell cycle protein APT56_04340 PF03033 Glycosyltransferase family 28 N-terminal domain APT56_04340 PF04101 Glycosyltransferase family 28 C-terminal domain APT56_04345 PF02875 Mur ligase family, glutamate ligase domain APT56_04345 PF08245 Mur ligase middle domain APT56_04345 PF01225 Mur ligase family, catalytic domain APT56_04350 PF01820 D-ala D-ala ligase N-terminus APT56_04350 PF07478 D-ala D-ala ligase C-terminus APT56_04355 PF03799 Cell division protein FtsQ APT56_04355 PF08478 POTRA domain, FtsQ-type APT56_04360 PF02491 SHS2 domain inserted in FTSA APT56_04365 PF00091 Tubulin/FtsZ family, GTPase domain APT56_04365 PF12327 FtsZ family, C-terminal domain APT56_04370 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APT56_04380 PF01551 Peptidase family M23 APT56_04380 PF08525 Opacity-associated protein A N-terminal motif APT56_04380 PF01476 LysM domain APT56_04385 PF02810 SEC-C motif APT56_04385 PF07517 SecA DEAD-like domain APT56_04385 PF01043 SecA preprotein cross-linking domain APT56_04385 PF07516 SecA Wing and Scaffold domain APT56_04395 PF07729 FCD domain APT56_04395 PF00392 Bacterial regulatory proteins, gntR family APT56_04400 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_04405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_04405 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_04415 PF00106 short chain dehydrogenase APT56_04420 PF01037 Lrp/AsnC ligand binding domain APT56_04430 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP APT56_04435 PF03448 MgtE intracellular N domain APT56_04435 PF00571 CBS domain APT56_04435 PF01769 Divalent cation transporter APT56_04440 PF03061 Thioesterase superfamily APT56_04445 PF03601 Conserved hypothetical protein 698 APT56_04450 PF03466 LysR substrate binding domain APT56_04450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04455 PF01546 Peptidase family M20/M25/M40 APT56_04455 PF07687 Peptidase dimerisation domain APT56_04460 PF00501 AMP-binding enzyme APT56_04460 PF13193 AMP-binding enzyme C-terminal domain APT56_04465 PF00459 Inositol monophosphatase family APT56_04470 PF01266 FAD dependent oxidoreductase APT56_04470 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APT56_04475 PF01055 Glycosyl hydrolases family 31 APT56_04475 PF13802 Galactose mutarotase-like APT56_04480 PF09383 NIL domain APT56_04480 PF00005 ABC transporter APT56_04485 PF00528 Binding-protein-dependent transport system inner membrane component APT56_04490 PF03180 NLPA lipoprotein APT56_04510 PF00672 HAMP domain APT56_04510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_04510 PF02203 Tar ligand binding domain homologue APT56_04515 PF03466 LysR substrate binding domain APT56_04515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04525 PF01475 Ferric uptake regulator family APT56_04540 PF03692 Putative zinc- or iron-chelating domain APT56_04545 PF03352 Methyladenine glycosylase APT56_04550 PF00884 Sulfatase APT56_04555 PF05170 AsmA family APT56_04560 PF17151 Periplasmic sensor domain APT56_04560 PF00990 Diguanylate cyclase, GGDEF domain APT56_04585 PF02525 Flavodoxin-like fold APT56_04595 PF00691 OmpA family APT56_04595 PF04972 BON domain APT56_04600 PF01329 Pterin 4 alpha carbinolamine dehydratase APT56_04615 PF01494 FAD binding domain APT56_04625 PF00483 Nucleotidyl transferase APT56_04630 PF01636 Phosphotransferase enzyme family APT56_04635 PF04453 LPS transport system D APT56_04640 PF09312 SurA N-terminal domain APT56_04640 PF00639 PPIC-type PPIASE domain APT56_04645 PF00398 Ribosomal RNA adenine dimethylase APT56_04650 PF02595 Glycerate kinase family APT56_04655 PF02887 Pyruvate kinase, alpha/beta domain APT56_04655 PF00224 Pyruvate kinase, barrel domain APT56_04660 PF07670 Nucleoside recognition APT56_04670 PF01327 Polypeptide deformylase APT56_04675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_04680 PF00266 Aminotransferase class-V APT56_04690 PF01553 Acyltransferase APT56_04700 PF05746 DALR anticodon binding domain APT56_04700 PF02092 Glycyl-tRNA synthetase beta subunit APT56_04705 PF02091 Glycyl-tRNA synthetase alpha subunit APT56_04710 PF00378 Enoyl-CoA hydratase/isomerase APT56_04720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_04720 PF08447 PAS fold APT56_04720 PF13426 PAS domain APT56_04725 PF02515 CoA-transferase family III APT56_04730 PF13452 N-terminal half of MaoC dehydratase APT56_04735 PF00106 short chain dehydrogenase APT56_04745 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04755 PF03060 Nitronate monooxygenase APT56_04760 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04765 PF00501 AMP-binding enzyme APT56_04765 PF13193 AMP-binding enzyme C-terminal domain APT56_04770 PF00108 Thiolase, N-terminal domain APT56_04770 PF02803 Thiolase, C-terminal domain APT56_04780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_04780 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_04780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_04785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_04785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_04790 PF00378 Enoyl-CoA hydratase/isomerase APT56_04795 PF03466 LysR substrate binding domain APT56_04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04805 PF02515 CoA-transferase family III APT56_04810 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_04815 PF00294 pfkB family carbohydrate kinase APT56_04820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APT56_04825 PF01743 Poly A polymerase head domain APT56_04825 PF12627 Probable RNA and SrmB- binding site of polymerase A APT56_04825 PF12626 Polymerase A arginine-rich C-terminus APT56_04835 PF00308 Bacterial dnaA protein APT56_04840 PF00586 AIR synthase related protein, N-terminal domain APT56_04840 PF02769 AIR synthase related protein, C-terminal domain APT56_04855 PF08676 MutL C terminal dimerisation domain APT56_04855 PF01119 DNA mismatch repair protein, C-terminal domain APT56_04860 PF09335 SNARE associated Golgi protein APT56_04865 PF00593 TonB dependent receptor APT56_04865 PF07715 TonB-dependent Receptor Plug Domain APT56_04870 PF11741 AMIN domain APT56_04870 PF01520 N-acetylmuramoyl-L-alanine amidase APT56_04875 PF10415 Fumarase C C-terminus APT56_04875 PF00206 Lyase APT56_04885 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04890 PF03466 LysR substrate binding domain APT56_04900 PF13520 Amino acid permease APT56_04905 PF02515 CoA-transferase family III APT56_04910 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_04915 PF18158 Adaptive response protein AidB N-terminal domain APT56_04915 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_04920 PF03466 LysR substrate binding domain APT56_04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04925 PF00551 Formyl transferase APT56_04930 PF01266 FAD dependent oxidoreductase APT56_04935 PF01613 Flavin reductase like domain APT56_04940 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APT56_04940 PF01243 Pyridoxamine 5'-phosphate oxidase APT56_04950 PF07690 Major Facilitator Superfamily APT56_04955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_04960 PF12704 MacB-like periplasmic core domain APT56_04960 PF02687 FtsX-like permease family APT56_04960 PF00005 ABC transporter APT56_04965 PF02321 Outer membrane efflux protein APT56_04970 PF03466 LysR substrate binding domain APT56_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04980 PF00005 ABC transporter APT56_04985 PF02687 FtsX-like permease family APT56_04985 PF00005 ABC transporter APT56_04985 PF12704 MacB-like periplasmic core domain APT56_04995 PF13533 Biotin-lipoyl like APT56_05000 PF00899 ThiF family APT56_05005 PF00355 Rieske [2Fe-2S] domain APT56_05010 PF13577 SnoaL-like domain APT56_05015 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_05015 PF00355 Rieske [2Fe-2S] domain APT56_05020 PF03466 LysR substrate binding domain APT56_05020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05030 PF04715 Anthranilate synthase component I, N terminal region APT56_05030 PF00425 chorismate binding enzyme APT56_05035 PF00005 ABC transporter APT56_05035 PF17760 UvrA interaction domain APT56_05035 PF17755 UvrA DNA-binding domain APT56_05045 PF01081 KDPG and KHG aldolase APT56_05050 PF00294 pfkB family carbohydrate kinase APT56_05055 PF03466 LysR substrate binding domain APT56_05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05060 PF00535 Glycosyl transferase family 2 APT56_05065 PF00005 ABC transporter APT56_05070 PF00005 ABC transporter APT56_05070 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_05090 PF04199 Putative cyclase APT56_05105 PF00501 AMP-binding enzyme APT56_05105 PF13193 AMP-binding enzyme C-terminal domain APT56_05110 PF00866 Ring hydroxylating beta subunit APT56_05115 PF00355 Rieske [2Fe-2S] domain APT56_05115 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_05120 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_05140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_05150 PF00528 Binding-protein-dependent transport system inner membrane component APT56_05150 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_05155 PF00005 ABC transporter APT56_05155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_05160 PF00005 ABC transporter APT56_05160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_05180 PF02522 Aminoglycoside 3-N-acetyltransferase APT56_05185 PF12848 ABC transporter APT56_05185 PF00005 ABC transporter APT56_05190 PF01850 PIN domain APT56_05205 PF03776 Septum formation topological specificity factor MinE APT56_05210 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT56_05215 PF05209 Septum formation inhibitor MinC, N-terminal domain APT56_05215 PF03775 Septum formation inhibitor MinC, C-terminal domain APT56_05220 PF01614 Bacterial transcriptional regulator APT56_05220 PF09339 IclR helix-turn-helix domain APT56_05230 PF02515 CoA-transferase family III APT56_05235 PF03401 Tripartite tricarboxylate transporter family receptor APT56_05240 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APT56_05240 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT56_05250 PF02322 Cytochrome bd terminal oxidase subunit II APT56_05255 PF00270 DEAD/DEAH box helicase APT56_05255 PF00271 Helicase conserved C-terminal domain APT56_05255 PF09382 RQC domain APT56_05255 PF00570 HRDC domain APT56_05255 PF16124 RecQ zinc-binding APT56_05265 PF00072 Response regulator receiver domain APT56_05265 PF00486 Transcriptional regulatory protein, C terminal APT56_05275 PF05491 RuvB C-terminal winged helix domain APT56_05275 PF17864 RuvB AAA lid domain APT56_05275 PF05496 Holliday junction DNA helicase RuvB P-loop domain APT56_05280 PF00291 Pyridoxal-phosphate dependent enzyme APT56_05285 PF08338 Domain of unknown function (DUF1731) APT56_05285 PF01370 NAD dependent epimerase/dehydratase family APT56_05290 PF07499 RuvA, C-terminal domain APT56_05290 PF01330 RuvA N terminal domain APT56_05295 PF02075 Crossover junction endodeoxyribonuclease RuvC APT56_05300 PF02142 MGS-like domain APT56_05300 PF01808 AICARFT/IMPCHase bienzyme APT56_05305 PF02954 Bacterial regulatory protein, Fis family APT56_05310 PF01207 Dihydrouridine synthase (Dus) APT56_05315 PF01494 FAD binding domain APT56_05325 PF05195 Aminopeptidase P, N-terminal domain APT56_05325 PF00557 Metallopeptidase family M24 APT56_05340 PF00689 Cation transporting ATPase, C-terminus APT56_05340 PF00690 Cation transporter/ATPase, N-terminus APT56_05345 PF13609 Gram-negative porin APT56_05355 PF00483 Nucleotidyl transferase APT56_05360 PF13181 Tetratricopeptide repeat APT56_05360 PF01435 Peptidase family M48 APT56_05380 PF01063 Amino-transferase class IV APT56_05395 PF01494 FAD binding domain APT56_05400 PF07690 Major Facilitator Superfamily APT56_05405 PF00593 TonB dependent receptor APT56_05405 PF07715 TonB-dependent Receptor Plug Domain APT56_05415 PF00271 Helicase conserved C-terminal domain APT56_05415 PF00270 DEAD/DEAH box helicase APT56_05435 PF09339 IclR helix-turn-helix domain APT56_05435 PF01614 Bacterial transcriptional regulator APT56_05440 PF03401 Tripartite tricarboxylate transporter family receptor APT56_05450 PF01180 Dihydroorotate dehydrogenase APT56_05455 PF04377 Arginine-tRNA-protein transferase, C terminus APT56_05455 PF04376 Arginine-tRNA-protein transferase, N terminus APT56_05460 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APT56_05470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05470 PF03466 LysR substrate binding domain APT56_05515 PF00392 Bacterial regulatory proteins, gntR family APT56_05515 PF00155 Aminotransferase class I and II APT56_05525 PF02525 Flavodoxin-like fold APT56_05540 PF01565 FAD binding domain APT56_05540 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APT56_05545 PF05173 Dihydrodipicolinate reductase, C-terminus APT56_05545 PF01113 Dihydrodipicolinate reductase, N-terminus APT56_05550 PF04355 SmpA / OmlA family APT56_05555 PF01475 Ferric uptake regulator family APT56_05560 PF02463 RecF/RecN/SMC N terminal domain APT56_05565 PF01513 ATP-NAD kinase APT56_05570 PF01628 HrcA protein C terminal domain APT56_05570 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding APT56_05575 PF00762 Ferrochelatase APT56_05585 PF01025 GrpE APT56_05595 PF00012 Hsp70 protein APT56_05600 PF00226 DnaJ domain APT56_05600 PF01556 DnaJ C terminal domain APT56_05600 PF00684 DnaJ central domain APT56_05610 PF05193 Peptidase M16 inactive domain APT56_05610 PF00675 Insulinase (Peptidase family M16) APT56_05615 PF13302 Acetyltransferase (GNAT) domain APT56_05635 PF00004 ATPase family associated with various cellular activities (AAA) APT56_05635 PF01434 Peptidase family M41 APT56_05635 PF17862 AAA+ lid domain APT56_05640 PF00034 Cytochrome c APT56_05655 PF00180 Isocitrate/isopropylmalate dehydrogenase APT56_05665 PF04932 O-Antigen ligase APT56_05670 PF00701 Dihydrodipicolinate synthetase family APT56_05685 PF00486 Transcriptional regulatory protein, C terminal APT56_05685 PF00072 Response regulator receiver domain APT56_05690 PF13493 Domain of unknown function (DUF4118) APT56_05690 PF13492 GAF domain APT56_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_05690 PF00512 His Kinase A (phospho-acceptor) domain APT56_05690 PF02702 Osmosensitive K+ channel His kinase sensor domain APT56_05695 PF02669 K+-transporting ATPase, c chain APT56_05705 PF03814 Potassium-transporting ATPase A subunit APT56_05720 PF00474 Sodium:solute symporter family APT56_05725 PF00893 Small Multidrug Resistance protein APT56_05730 PF01713 Smr domain APT56_05730 PF00488 MutS domain V APT56_05735 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_05740 PF17854 FtsK alpha domain APT56_05740 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APT56_05740 PF01580 FtsK/SpoIIIE family APT56_05740 PF09397 Ftsk gamma domain APT56_05745 PF03548 Outer membrane lipoprotein carrier protein LolA APT56_05750 PF01042 Endoribonuclease L-PSP APT56_05755 PF07969 Amidohydrolase family APT56_05760 PF00571 CBS domain APT56_05760 PF01380 SIS domain APT56_05765 PF00005 ABC transporter APT56_05765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_05770 PF00005 ABC transporter APT56_05770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_05775 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_05775 PF00528 Binding-protein-dependent transport system inner membrane component APT56_05780 PF00528 Binding-protein-dependent transport system inner membrane component APT56_05785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_05795 PF00795 Carbon-nitrogen hydrolase APT56_05800 PF00004 ATPase family associated with various cellular activities (AAA) APT56_05800 PF12002 MgsA AAA+ ATPase C terminal APT56_05800 PF16193 AAA C-terminal domain APT56_05805 PF02403 Seryl-tRNA synthetase N-terminal domain APT56_05805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT56_05825 PF01979 Amidohydrolase family APT56_05830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05830 PF03466 LysR substrate binding domain APT56_05835 PF13378 Enolase C-terminal domain-like APT56_05835 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_05840 PF00701 Dihydrodipicolinate synthetase family APT56_05845 PF03401 Tripartite tricarboxylate transporter family receptor APT56_05855 PF00999 Sodium/hydrogen exchanger family APT56_05855 PF02254 TrkA-N domain APT56_05860 PF00106 short chain dehydrogenase APT56_05865 PF03883 Peroxide stress protein YaaA APT56_05870 PF12805 FUSC-like inner membrane protein yccS APT56_05875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_05875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_05875 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_05880 PF10369 Small subunit of acetolactate synthase APT56_05885 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APT56_05885 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APT56_05890 PF01066 CDP-alcohol phosphatidyltransferase APT56_05900 PF00312 Ribosomal protein S15 APT56_05905 PF03725 3' exoribonuclease family, domain 2 APT56_05905 PF01138 3' exoribonuclease family, domain 1 APT56_05905 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APT56_05905 PF00013 KH domain APT56_05905 PF00575 S1 RNA binding domain APT56_05915 PF13291 ACT domain APT56_05915 PF00291 Pyridoxal-phosphate dependent enzyme APT56_05965 PF00795 Carbon-nitrogen hydrolase APT56_05970 PF03466 LysR substrate binding domain APT56_05970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05985 PF03466 LysR substrate binding domain APT56_05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05990 PF02515 CoA-transferase family III APT56_05995 PF03401 Tripartite tricarboxylate transporter family receptor APT56_06000 PF00682 HMGL-like APT56_06015 PF08240 Alcohol dehydrogenase GroES-like domain APT56_06015 PF08659 KR domain APT56_06015 PF08990 Erythronolide synthase docking APT56_06015 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_06015 PF16197 Ketoacyl-synthetase C-terminal extension APT56_06015 PF00550 Phosphopantetheine attachment site APT56_06015 PF14765 Polyketide synthase dehydratase APT56_06015 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_06015 PF00698 Acyl transferase domain APT56_06020 PF00121 Triosephosphate isomerase APT56_06025 PF03840 Preprotein translocase SecG subunit APT56_06065 PF13087 AAA domain APT56_06065 PF13087 AAA domain APT56_06065 PF13086 AAA domain APT56_06065 PF13195 Protein of unknown function (DUF4011) APT56_06065 PF13195 Protein of unknown function (DUF4011) APT56_06065 PF13086 AAA domain APT56_06100 PF00593 TonB dependent receptor APT56_06100 PF07715 TonB-dependent Receptor Plug Domain APT56_06100 PF07660 Secretin and TonB N terminus short domain APT56_06105 PF04542 Sigma-70 region 2 APT56_06105 PF08281 Sigma-70, region 4 APT56_06110 PF04773 FecR protein APT56_06110 PF16220 Domain of unknown function (DUF4880) APT56_06115 PF00593 TonB dependent receptor APT56_06115 PF07715 TonB-dependent Receptor Plug Domain APT56_06130 PF04542 Sigma-70 region 2 APT56_06130 PF08281 Sigma-70, region 4 APT56_06140 PF07715 TonB-dependent Receptor Plug Domain APT56_06140 PF00593 TonB dependent receptor APT56_06150 PF08521 Two-component sensor kinase N-terminal APT56_06150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_06150 PF00512 His Kinase A (phospho-acceptor) domain APT56_06155 PF00486 Transcriptional regulatory protein, C terminal APT56_06155 PF00072 Response regulator receiver domain APT56_06160 PF12951 Passenger-associated-transport-repeat APT56_06160 PF00082 Subtilase family APT56_06160 PF03797 Autotransporter beta-domain APT56_06165 PF03600 Citrate transporter APT56_06170 PF00106 short chain dehydrogenase APT56_06190 PF00313 'Cold-shock' DNA-binding domain APT56_06205 PF06906 Protein of unknown function (DUF1272) APT56_06210 PF05661 Protein of unknown function (DUF808) APT56_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06215 PF03466 LysR substrate binding domain APT56_06225 PF07660 Secretin and TonB N terminus short domain APT56_06225 PF00593 TonB dependent receptor APT56_06225 PF07715 TonB-dependent Receptor Plug Domain APT56_06230 PF01037 Lrp/AsnC ligand binding domain APT56_06240 PF00528 Binding-protein-dependent transport system inner membrane component APT56_06245 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_06245 PF00528 Binding-protein-dependent transport system inner membrane component APT56_06250 PF00005 ABC transporter APT56_06250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_06260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_06265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_06275 PF02321 Outer membrane efflux protein APT56_06280 PF00873 AcrB/AcrD/AcrF family APT56_06285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_06295 PF02028 BCCT, betaine/carnitine/choline family transporter APT56_06300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_06305 PF00873 AcrB/AcrD/AcrF family APT56_06310 PF02321 Outer membrane efflux protein APT56_06320 PF02321 Outer membrane efflux protein APT56_06325 PF00873 AcrB/AcrD/AcrF family APT56_06330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_06330 PF00529 HlyD membrane-fusion protein of T1SS APT56_06335 PF08361 MAATS-type transcriptional repressor, C-terminal region APT56_06335 PF00440 Bacterial regulatory proteins, tetR family APT56_06340 PF03466 LysR substrate binding domain APT56_06340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_06355 PF00781 Diacylglycerol kinase catalytic domain APT56_06360 PF00149 Calcineurin-like phosphoesterase APT56_06365 PF01569 PAP2 superfamily APT56_06385 PF13609 Gram-negative porin APT56_06390 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APT56_06395 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT56_06400 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APT56_06405 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT56_06415 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APT56_06415 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APT56_06415 PF10531 SLBB domain APT56_06420 PF00384 Molybdopterin oxidoreductase APT56_06420 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APT56_06420 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APT56_06425 PF00146 NADH dehydrogenase APT56_06430 PF12838 4Fe-4S dicluster domain APT56_06435 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APT56_06440 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT56_06445 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT56_06445 PF00361 Proton-conducting membrane transporter APT56_06450 PF00361 Proton-conducting membrane transporter APT56_06450 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APT56_06455 PF00361 Proton-conducting membrane transporter APT56_06465 PF07715 TonB-dependent Receptor Plug Domain APT56_06465 PF00593 TonB dependent receptor APT56_06475 PF03461 TRCF domain APT56_06475 PF00271 Helicase conserved C-terminal domain APT56_06475 PF00270 DEAD/DEAH box helicase APT56_06475 PF02559 CarD-like/TRCF domain APT56_06475 PF17757 UvrB interaction domain APT56_06480 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APT56_06485 PF02542 YgbB family APT56_06495 PF02627 Carboxymuconolactone decarboxylase family APT56_06500 PF00578 AhpC/TSA family APT56_06505 PF00512 His Kinase A (phospho-acceptor) domain APT56_06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_06505 PF00672 HAMP domain APT56_06510 PF00486 Transcriptional regulatory protein, C terminal APT56_06510 PF00072 Response regulator receiver domain APT56_06515 PF00814 Glycoprotease family APT56_06520 PF03167 Uracil DNA glycosylase superfamily APT56_06525 PF07690 Major Facilitator Superfamily APT56_06530 PF02463 RecF/RecN/SMC N terminal domain APT56_06530 PF06470 SMC proteins Flexible Hinge Domain APT56_06540 PF12826 Helix-hairpin-helix motif APT56_06540 PF03120 NAD-dependent DNA ligase OB-fold domain APT56_06540 PF01653 NAD-dependent DNA ligase adenylation domain APT56_06540 PF00533 BRCA1 C Terminus (BRCT) domain APT56_06540 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APT56_06555 PF04279 Intracellular septation protein A APT56_06560 PF01641 SelR domain APT56_06565 PF00005 ABC transporter APT56_06570 PF02361 Cobalt transport protein APT56_06575 PF02632 BioY family APT56_06590 PF00005 ABC transporter APT56_06590 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_06595 PF00005 ABC transporter APT56_06605 PF04185 Phosphoesterase family APT56_06605 PF05506 Domain of unknown function (DUF756) APT56_06610 PF01063 Amino-transferase class IV APT56_06625 PF02653 Branched-chain amino acid transport system / permease component APT56_06635 PF00005 ABC transporter APT56_06640 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_06640 PF00005 ABC transporter APT56_06645 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_06645 PF00633 Helix-hairpin-helix motif APT56_06645 PF10576 Iron-sulfur binding domain of endonuclease III APT56_06650 PF04060 Putative Fe-S cluster APT56_06660 PF00970 Oxidoreductase FAD-binding domain APT56_06660 PF00175 Oxidoreductase NAD-binding domain APT56_06665 PF11953 Domain of unknown function (DUF3470) APT56_06665 PF00037 4Fe-4S binding domain APT56_06670 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APT56_06670 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APT56_06675 PF01042 Endoribonuclease L-PSP APT56_06685 PF06167 Glucose-regulated metallo-peptidase M90 APT56_06690 PF04607 Region found in RelA / SpoT proteins APT56_06690 PF13291 ACT domain APT56_06690 PF02824 TGS domain APT56_06695 PF07690 Major Facilitator Superfamily APT56_06700 PF01546 Peptidase family M20/M25/M40 APT56_06700 PF07687 Peptidase dimerisation domain APT56_06705 PF00291 Pyridoxal-phosphate dependent enzyme APT56_06710 PF00290 Tryptophan synthase alpha chain APT56_06715 PF01039 Carboxyl transferase domain APT56_06715 PF17848 Acetyl-coA carboxylase zinc finger domain APT56_06720 PF09411 Lipid A 3-O-deacylase (PagL) APT56_06725 PF12111 Polyribonucleotide phosphorylase C terminal APT56_06725 PF10150 Ribonuclease E/G family APT56_06725 PF00575 S1 RNA binding domain APT56_06730 PF00849 RNA pseudouridylate synthase APT56_06730 PF01479 S4 domain APT56_06735 PF13419 Haloacid dehalogenase-like hydrolase APT56_06740 PF00174 Oxidoreductase molybdopterin binding domain APT56_06745 PF01794 Ferric reductase like transmembrane component APT56_06750 PF01471 Putative peptidoglycan binding domain APT56_06750 PF01510 N-acetylmuramoyl-L-alanine amidase APT56_06755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT56_06760 PF02545 Maf-like protein APT56_06765 PF02620 Large ribosomal RNA subunit accumulation protein YceD APT56_06770 PF01783 Ribosomal L32p protein family APT56_06775 PF02504 Fatty acid synthesis protein APT56_06780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT56_06780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT56_06785 PF00698 Acyl transferase domain APT56_06795 PF00550 Phosphopantetheine attachment site APT56_06800 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_06800 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_06810 PF08281 Sigma-70, region 4 APT56_06810 PF04542 Sigma-70 region 2 APT56_06825 PF13180 PDZ domain APT56_06830 PF00009 Elongation factor Tu GTP binding domain APT56_06830 PF06421 GTP-binding protein LepA C-terminus APT56_06830 PF03144 Elongation factor Tu domain 2 APT56_06830 PF00679 Elongation factor G C-terminus APT56_06835 PF10502 Signal peptidase, peptidase S26 APT56_06840 PF00035 Double-stranded RNA binding motif APT56_06840 PF14622 Ribonuclease-III-like APT56_06845 PF01926 50S ribosome-binding GTPase APT56_06845 PF07650 KH domain APT56_06850 PF02565 Recombination protein O C terminal APT56_06850 PF11967 Recombination protein O N terminal APT56_06860 PF00291 Pyridoxal-phosphate dependent enzyme APT56_06870 PF03401 Tripartite tricarboxylate transporter family receptor APT56_06880 PF00248 Aldo/keto reductase family APT56_06885 PF01027 Inhibitor of apoptosis-promoting Bax1 APT56_06900 PF02789 Cytosol aminopeptidase family, N-terminal domain APT56_06900 PF00883 Cytosol aminopeptidase family, catalytic domain APT56_06910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06920 PF00171 Aldehyde dehydrogenase family APT56_06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06925 PF03466 LysR substrate binding domain APT56_06935 PF00877 NlpC/P60 family APT56_06940 PF00501 AMP-binding enzyme APT56_06940 PF16177 Acetyl-coenzyme A synthetase N-terminus APT56_06940 PF13193 AMP-binding enzyme C-terminal domain APT56_06945 PF03928 Haem-degrading APT56_06960 PF00892 EamA-like transporter family APT56_06965 PF01212 Beta-eliminating lyase APT56_06995 PF01144 Coenzyme A transferase APT56_07005 PF13673 Acetyltransferase (GNAT) domain APT56_07015 PF01112 Asparaginase APT56_07020 PF00005 ABC transporter APT56_07020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_07025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_07030 PF00528 Binding-protein-dependent transport system inner membrane component APT56_07035 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_07035 PF00528 Binding-protein-dependent transport system inner membrane component APT56_07040 PF03576 Peptidase family S58 APT56_07050 PF01321 Creatinase/Prolidase N-terminal domain APT56_07050 PF00557 Metallopeptidase family M24 APT56_07060 PF06418 CTP synthase N-terminus APT56_07060 PF00117 Glutamine amidotransferase class-I APT56_07070 PF03952 Enolase, N-terminal domain APT56_07070 PF00113 Enolase, C-terminal TIM barrel domain APT56_07075 PF04977 Septum formation initiator APT56_07085 PF01430 Hsp33 protein APT56_07095 PF00501 AMP-binding enzyme APT56_07095 PF13193 AMP-binding enzyme C-terminal domain APT56_07125 PF02926 THUMP domain APT56_07125 PF01170 Putative RNA methylase family UPF0020 APT56_07135 PF03972 MmgE/PrpD family APT56_07140 PF00285 Citrate synthase, C-terminal domain APT56_07150 PF00056 lactate/malate dehydrogenase, NAD binding domain APT56_07150 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APT56_07155 PF07702 UTRA domain APT56_07155 PF00392 Bacterial regulatory proteins, gntR family APT56_07160 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APT56_07165 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APT56_07170 PF00890 FAD binding domain APT56_07170 PF02910 Fumarate reductase flavoprotein C-term APT56_07175 PF13085 2Fe-2S iron-sulfur cluster binding domain APT56_07180 PF03937 Flavinator of succinate dehydrogenase APT56_07185 PF00285 Citrate synthase, C-terminal domain APT56_07200 PF01515 Phosphate acetyl/butaryl transferase APT56_07200 PF03949 Malic enzyme, NAD binding domain APT56_07200 PF00390 Malic enzyme, N-terminal domain APT56_07205 PF00456 Transketolase, thiamine diphosphate binding domain APT56_07205 PF17831 Pyruvate dehydrogenase E1 component middle domain APT56_07210 PF03169 OPT oligopeptide transporter protein APT56_07215 PF07687 Peptidase dimerisation domain APT56_07215 PF01546 Peptidase family M20/M25/M40 APT56_07220 PF01546 Peptidase family M20/M25/M40 APT56_07220 PF07687 Peptidase dimerisation domain APT56_07230 PF00291 Pyridoxal-phosphate dependent enzyme APT56_07235 PF01037 Lrp/AsnC ligand binding domain APT56_07235 PF13404 AsnC-type helix-turn-helix domain APT56_07240 PF16078 2-oxoglutarate dehydrogenase N-terminus APT56_07240 PF00676 Dehydrogenase E1 component APT56_07240 PF16870 2-oxoglutarate dehydrogenase C-terminal APT56_07240 PF02779 Transketolase, pyrimidine binding domain APT56_07245 PF00364 Biotin-requiring enzyme APT56_07245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT56_07245 PF02817 e3 binding domain APT56_07250 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_07250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_07255 PF03969 AFG1-like ATPase APT56_07260 PF08281 Sigma-70, region 4 APT56_07260 PF04542 Sigma-70 region 2 APT56_07265 PF16220 Domain of unknown function (DUF4880) APT56_07265 PF04773 FecR protein APT56_07270 PF07715 TonB-dependent Receptor Plug Domain APT56_07270 PF00593 TonB dependent receptor APT56_07295 PF00579 tRNA synthetases class I (W and Y) APT56_07305 PF09371 Tex-like protein N-terminal domain APT56_07305 PF16921 Tex protein YqgF-like domain APT56_07305 PF00575 S1 RNA binding domain APT56_07305 PF17674 HHH domain APT56_07310 PF13307 Helicase C-terminal domain APT56_07310 PF04851 Type III restriction enzyme, res subunit APT56_07315 PF13525 Outer membrane lipoprotein APT56_07320 PF01479 S4 domain APT56_07320 PF00849 RNA pseudouridylate synthase APT56_07330 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus APT56_07335 PF00106 short chain dehydrogenase APT56_07340 PF05233 PHB accumulation regulatory domain APT56_07340 PF07879 PHB/PHA accumulation regulator DNA-binding domain APT56_07345 PF10634 Fe2+ transport protein APT56_07365 PF17287 POTRA domain APT56_07365 PF08479 POTRA domain, ShlB-type APT56_07365 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_07370 PF13332 Hemagglutinin repeat APT56_07370 PF15605 Bacterial toxin 28 APT56_07370 PF04829 Pre-toxin domain with VENN motif APT56_07370 PF05860 haemagglutination activity domain APT56_07385 PF02567 Phenazine biosynthesis-like protein APT56_07390 PF04972 BON domain APT56_07395 PF05532 CsbD-like APT56_07400 PF08245 Mur ligase middle domain APT56_07400 PF02875 Mur ligase family, glutamate ligase domain APT56_07400 PF08443 RimK-like ATP-grasp domain APT56_07405 PF02875 Mur ligase family, glutamate ligase domain APT56_07405 PF08443 RimK-like ATP-grasp domain APT56_07405 PF08245 Mur ligase middle domain APT56_07410 PF00005 ABC transporter APT56_07410 PF00664 ABC transporter transmembrane region APT56_07425 PF04305 Protein of unknown function (DUF455) APT56_07430 PF03475 3-alpha domain APT56_07430 PF03473 MOSC domain APT56_07435 PF13406 Transglycosylase SLT domain APT56_07450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_07450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_07450 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_07460 PF00501 AMP-binding enzyme APT56_07460 PF13193 AMP-binding enzyme C-terminal domain APT56_07470 PF03062 MBOAT, membrane-bound O-acyltransferase family APT56_07480 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX APT56_07490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APT56_07490 PF13632 Glycosyl transferase family group 2 APT56_07500 PF02350 UDP-N-acetylglucosamine 2-epimerase APT56_07505 PF01545 Cation efflux family APT56_07515 PF07690 Major Facilitator Superfamily APT56_07520 PF13419 Haloacid dehalogenase-like hydrolase APT56_07530 PF00691 OmpA family APT56_07535 PF00521 DNA gyrase/topoisomerase IV, subunit A APT56_07535 PF03989 DNA gyrase C-terminal domain, beta-propeller APT56_07540 PF00266 Aminotransferase class-V APT56_07545 PF00800 Prephenate dehydratase APT56_07545 PF01817 Chorismate mutase type II APT56_07545 PF01842 ACT domain APT56_07560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT56_07565 PF02224 Cytidylate kinase APT56_07570 PF00575 S1 RNA binding domain APT56_07575 PF00216 Bacterial DNA-binding protein APT56_07585 PF18073 Rubredoxin metal binding domain APT56_07590 PF00294 pfkB family carbohydrate kinase APT56_07595 PF01370 NAD dependent epimerase/dehydratase family APT56_07605 PF00291 Pyridoxal-phosphate dependent enzyme APT56_07610 PF03401 Tripartite tricarboxylate transporter family receptor APT56_07625 PF13406 Transglycosylase SLT domain APT56_07630 PF00850 Histone deacetylase domain APT56_07635 PF01012 Electron transfer flavoprotein domain APT56_07640 PF00766 Electron transfer flavoprotein FAD-binding domain APT56_07640 PF01012 Electron transfer flavoprotein domain APT56_07645 PF06826 Predicted Permease Membrane Region APT56_07650 PF00155 Aminotransferase class I and II APT56_07655 PF06826 Predicted Permease Membrane Region APT56_07655 PF02080 TrkA-C domain APT56_07660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_07660 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_07660 PF12806 Acetyl-CoA dehydrogenase C-terminal like APT56_07660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_07665 PF00578 AhpC/TSA family APT56_07665 PF10417 C-terminal domain of 1-Cys peroxiredoxin APT56_07675 PF00528 Binding-protein-dependent transport system inner membrane component APT56_07680 PF00528 Binding-protein-dependent transport system inner membrane component APT56_07685 PF12857 TOBE-like domain APT56_07685 PF17850 CysA C-terminal regulatory domain APT56_07685 PF00005 ABC transporter APT56_07690 PF01507 Phosphoadenosine phosphosulfate reductase family APT56_07695 PF01507 Phosphoadenosine phosphosulfate reductase family APT56_07700 PF00009 Elongation factor Tu GTP binding domain APT56_07705 PF04055 Radical SAM superfamily APT56_07720 PF01245 Ribosomal protein L19 APT56_07725 PF00293 NUDIX domain APT56_07730 PF03193 RsgA GTPase APT56_07735 PF01435 Peptidase family M48 APT56_07740 PF00929 Exonuclease APT56_07745 PF03853 YjeF-related protein N-terminus APT56_07750 PF08223 PaaX-like protein C-terminal domain APT56_07750 PF07848 PaaX-like protein APT56_07755 PF05138 Phenylacetic acid catabolic protein APT56_07760 PF06243 Phenylacetic acid degradation B APT56_07765 PF05138 Phenylacetic acid catabolic protein APT56_07770 PF01883 Iron-sulfur cluster assembly protein APT56_07775 PF00175 Oxidoreductase NAD-binding domain APT56_07775 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_07775 PF00970 Oxidoreductase FAD-binding domain APT56_07780 PF00171 Aldehyde dehydrogenase family APT56_07785 PF00378 Enoyl-CoA hydratase/isomerase APT56_07790 PF03061 Thioesterase superfamily APT56_07800 PF01554 MatE APT56_07810 PF01197 Ribosomal protein L31 APT56_07815 PF03301 Tryptophan 2,3-dioxygenase APT56_07820 PF04199 Putative cyclase APT56_07825 PF04002 RadC-like JAB domain APT56_07835 PF02401 LytB protein APT56_07840 PF14497 Glutathione S-transferase, C-terminal domain APT56_07840 PF02798 Glutathione S-transferase, N-terminal domain APT56_07845 PF13180 PDZ domain APT56_07845 PF17820 PDZ domain APT56_07850 PF08521 Two-component sensor kinase N-terminal APT56_07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_07850 PF00512 His Kinase A (phospho-acceptor) domain APT56_07855 PF00486 Transcriptional regulatory protein, C terminal APT56_07855 PF00072 Response regulator receiver domain APT56_07870 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT56_07870 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT56_07875 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT56_07875 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT56_07880 PF03466 LysR substrate binding domain APT56_07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_07890 PF04079 Segregation and condensation complex subunit ScpB APT56_07895 PF01479 S4 domain APT56_07895 PF00849 RNA pseudouridylate synthase APT56_07900 PF02576 RimP N-terminal domain APT56_07900 PF17384 RimP C-terminal SH3 domain APT56_07905 PF08529 NusA N-terminal domain APT56_07905 PF13184 NusA-like KH domain APT56_07910 PF00009 Elongation factor Tu GTP binding domain APT56_07910 PF04760 Translation initiation factor IF-2, N-terminal region APT56_07910 PF08364 Bacterial translation initiation factor IF-2 associated region APT56_07910 PF11987 Translation-initiation factor 2 APT56_07915 PF02033 Ribosome-binding factor A APT56_07920 PF01509 TruB family pseudouridylate synthase (N terminal domain) APT56_07920 PF16198 tRNA pseudouridylate synthase B C-terminal domain APT56_07935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_07935 PF03466 LysR substrate binding domain APT56_07940 PF03466 LysR substrate binding domain APT56_07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_07945 PF03401 Tripartite tricarboxylate transporter family receptor APT56_07950 PF01546 Peptidase family M20/M25/M40 APT56_07955 PF03641 Possible lysine decarboxylase APT56_07960 PF00476 DNA polymerase family A APT56_07960 PF01612 3'-5' exonuclease APT56_07960 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APT56_07960 PF01367 5'-3' exonuclease, C-terminal SAM fold APT56_07970 PF01738 Dienelactone hydrolase family APT56_07975 PF02690 Na+/Pi-cotransporter APT56_07980 PF03315 Serine dehydratase beta chain APT56_07980 PF03313 Serine dehydratase alpha chain APT56_07985 PF01435 Peptidase family M48 APT56_07995 PF00581 Rhodanese-like domain APT56_08005 PF03466 LysR substrate binding domain APT56_08005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_08010 PF08402 TOBE domain APT56_08010 PF00005 ABC transporter APT56_08020 PF13419 Haloacid dehalogenase-like hydrolase APT56_08030 PF01266 FAD dependent oxidoreductase APT56_08045 PF03401 Tripartite tricarboxylate transporter family receptor APT56_08055 PF02609 Exonuclease VII small subunit APT56_08060 PF00348 Polyprenyl synthetase APT56_08065 PF02780 Transketolase, C-terminal domain APT56_08065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APT56_08065 PF02779 Transketolase, pyrimidine binding domain APT56_08070 PF02649 Type I GTP cyclohydrolase folE2 APT56_08075 PF05675 Protein of unknown function (DUF817) APT56_08080 PF01250 Ribosomal protein S6 APT56_08090 PF01084 Ribosomal protein S18 APT56_08095 PF03948 Ribosomal protein L9, C-terminal domain APT56_08095 PF01281 Ribosomal protein L9, N-terminal domain APT56_08105 PF00772 DnaB-like helicase N terminal domain APT56_08105 PF03796 DnaB-like helicase C terminal domain APT56_08110 PF13593 SBF-like CPA transporter family (DUF4137) APT56_08115 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT56_08125 PF13404 AsnC-type helix-turn-helix domain APT56_08125 PF01037 Lrp/AsnC ligand binding domain APT56_08150 PF00392 Bacterial regulatory proteins, gntR family APT56_08150 PF00155 Aminotransferase class I and II APT56_08170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT56_08170 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_08200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT56_08200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT56_08205 PF00990 Diguanylate cyclase, GGDEF domain APT56_08210 PF04381 Putative exonuclease, RdgC APT56_08220 PF00083 Sugar (and other) transporter APT56_08220 PF08946 Osmosensory transporter coiled coil APT56_08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_08225 PF08521 Two-component sensor kinase N-terminal APT56_08225 PF00512 His Kinase A (phospho-acceptor) domain APT56_08230 PF00486 Transcriptional regulatory protein, C terminal APT56_08230 PF00072 Response regulator receiver domain APT56_08235 PF00154 recA bacterial DNA recombination protein APT56_08240 PF02631 RecX family APT56_08245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_08245 PF03466 LysR substrate binding domain APT56_08250 PF08267 Cobalamin-independent synthase, N-terminal domain APT56_08250 PF01717 Cobalamin-independent synthase, Catalytic domain APT56_08255 PF13193 AMP-binding enzyme C-terminal domain APT56_08255 PF00668 Condensation domain APT56_08255 PF00550 Phosphopantetheine attachment site APT56_08255 PF00975 Thioesterase domain APT56_08255 PF00501 AMP-binding enzyme APT56_08265 PF00549 CoA-ligase APT56_08265 PF08442 ATP-grasp domain APT56_08270 PF00549 CoA-ligase APT56_08270 PF02629 CoA binding domain APT56_08275 PF03741 Integral membrane protein TerC family APT56_08280 PF03741 Integral membrane protein TerC family APT56_08285 PF03900 Porphobilinogen deaminase, C-terminal domain APT56_08285 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APT56_08305 PF00719 Inorganic pyrophosphatase APT56_08335 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_08335 PF00005 ABC transporter APT56_08340 PF00005 ABC transporter APT56_08345 PF02653 Branched-chain amino acid transport system / permease component APT56_08355 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_08365 PF13638 PIN domain APT56_08365 PF02562 PhoH-like protein APT56_08370 PF00578 AhpC/TSA family APT56_08380 PF00155 Aminotransferase class I and II APT56_08385 PF00742 Homoserine dehydrogenase APT56_08385 PF03447 Homoserine dehydrogenase, NAD binding domain APT56_08385 PF01842 ACT domain APT56_08390 PF14821 Threonine synthase N terminus APT56_08390 PF00291 Pyridoxal-phosphate dependent enzyme APT56_08400 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APT56_08405 PF17432 Domain of unknown function (DUF3458_C) ARM repeats APT56_08405 PF01433 Peptidase family M1 domain APT56_08405 PF11940 Domain of unknown function (DUF3458) Ig-like fold APT56_08415 PF00816 H-NS histone family APT56_08420 PF01523 Putative modulator of DNA gyrase APT56_08425 PF00793 DAHP synthetase I family APT56_08430 PF01565 FAD binding domain APT56_08430 PF02913 FAD linked oxidases, C-terminal domain APT56_08435 PF01565 FAD binding domain APT56_08435 PF02913 FAD linked oxidases, C-terminal domain APT56_08440 PF01565 FAD binding domain APT56_08445 PF02754 Cysteine-rich domain APT56_08445 PF13183 4Fe-4S dicluster domain APT56_08450 PF02233 NAD(P) transhydrogenase beta subunit APT56_08455 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APT56_08460 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT56_08460 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT56_08470 PF03401 Tripartite tricarboxylate transporter family receptor APT56_08475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_08475 PF03466 LysR substrate binding domain APT56_08485 PF01925 Sulfite exporter TauE/SafE APT56_08490 PF13417 Glutathione S-transferase, N-terminal domain APT56_08490 PF00043 Glutathione S-transferase, C-terminal domain APT56_08495 PF00206 Lyase APT56_08495 PF08328 Adenylosuccinate lyase C-terminal APT56_08500 PF01322 Cytochrome C' APT56_08540 PF13687 Domain of unknown function (DUF4153) APT56_08630 PF00589 Phage integrase family APT56_08650 PF00563 EAL domain APT56_08650 PF03707 Bacterial signalling protein N terminal repeat APT56_08650 PF00990 Diguanylate cyclase, GGDEF domain APT56_08660 PF00892 EamA-like transporter family APT56_08695 PF10017 Histidine-specific methyltransferase, SAM-dependent APT56_08705 PF13091 PLD-like domain APT56_08705 PF13396 Phospholipase_D-nuclease N-terminal APT56_08710 PF01645 Conserved region in glutamate synthase APT56_08715 PF04143 Sulphur transport APT56_08720 PF03547 Membrane transport protein APT56_08730 PF13673 Acetyltransferase (GNAT) domain APT56_08750 PF17876 Cold shock domain APT56_08750 PF08461 Ribonuclease R winged-helix domain APT56_08750 PF08206 Ribonuclease B OB domain APT56_08750 PF00773 RNB domain APT56_08750 PF00575 S1 RNA binding domain APT56_08755 PF00588 SpoU rRNA Methylase family APT56_08755 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT56_08760 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_08765 PF18331 PKHD-type hydroxylase C-terminal domain APT56_08765 PF13640 2OG-Fe(II) oxygenase superfamily APT56_08770 PF00216 Bacterial DNA-binding protein APT56_08785 PF01618 MotA/TolQ/ExbB proton channel family APT56_08790 PF02472 Biopolymer transport protein ExbD/TolR APT56_08795 PF00486 Transcriptional regulatory protein, C terminal APT56_08795 PF00072 Response regulator receiver domain APT56_08800 PF08521 Two-component sensor kinase N-terminal APT56_08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_08800 PF00512 His Kinase A (phospho-acceptor) domain APT56_08805 PF02705 K+ potassium transporter APT56_08810 PF00665 Integrase core domain APT56_08810 PF13333 Integrase core domain APT56_08810 PF13276 HTH-like domain APT56_08820 PF00764 Arginosuccinate synthase APT56_08825 PF02321 Outer membrane efflux protein APT56_08830 PF13533 Biotin-lipoyl like APT56_08835 PF00873 AcrB/AcrD/AcrF family APT56_08840 PF00072 Response regulator receiver domain APT56_08840 PF00486 Transcriptional regulatory protein, C terminal APT56_08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_08845 PF00672 HAMP domain APT56_08845 PF00512 His Kinase A (phospho-acceptor) domain APT56_08850 PF03466 LysR substrate binding domain APT56_08850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_08855 PF04909 Amidohydrolase APT56_08875 PF12697 Alpha/beta hydrolase family APT56_08880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT56_08880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT56_08885 PF00202 Aminotransferase class-III APT56_08900 PF01177 Asp/Glu/Hydantoin racemase APT56_08915 PF00528 Binding-protein-dependent transport system inner membrane component APT56_08915 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_08920 PF01979 Amidohydrolase family APT56_08925 PF01979 Amidohydrolase family APT56_08930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_08930 PF00005 ABC transporter APT56_08935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_08935 PF00005 ABC transporter APT56_08940 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_08950 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_08970 PF13416 Bacterial extracellular solute-binding protein APT56_08975 PF00005 ABC transporter APT56_08975 PF08402 TOBE domain APT56_08980 PF00528 Binding-protein-dependent transport system inner membrane component APT56_08985 PF00528 Binding-protein-dependent transport system inner membrane component APT56_08995 PF02245 Methylpurine-DNA glycosylase (MPG) APT56_09005 PF02646 RmuC family APT56_09010 PF01425 Amidase APT56_09015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_09015 PF18158 Adaptive response protein AidB N-terminal domain APT56_09015 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_09020 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APT56_09025 PF01895 PhoU domain APT56_09030 PF04185 Phosphoesterase family APT56_09030 PF05506 Domain of unknown function (DUF756) APT56_09035 PF04362 Bacterial Fe(2+) trafficking APT56_09040 PF00583 Acetyltransferase (GNAT) family APT56_09040 PF00696 Amino acid kinase family APT56_09045 PF00271 Helicase conserved C-terminal domain APT56_09045 PF04408 Helicase associated domain (HA2) APT56_09045 PF11898 Domain of unknown function (DUF3418) APT56_09045 PF00270 DEAD/DEAH box helicase APT56_09045 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APT56_09050 PF00528 Binding-protein-dependent transport system inner membrane component APT56_09055 PF00005 ABC transporter APT56_09065 PF14579 Helix-hairpin-helix motif APT56_09065 PF02811 PHP domain APT56_09065 PF01336 OB-fold nucleic acid binding domain APT56_09065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT56_09065 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT56_09070 PF00534 Glycosyl transferases group 1 APT56_09075 PF01522 Polysaccharide deacetylase APT56_09080 PF00535 Glycosyl transferase family 2 APT56_09090 PF01522 Polysaccharide deacetylase APT56_09100 PF03692 Putative zinc- or iron-chelating domain APT56_09115 PF00005 ABC transporter APT56_09115 PF00664 ABC transporter transmembrane region APT56_09120 PF00999 Sodium/hydrogen exchanger family APT56_09120 PF02254 TrkA-N domain APT56_09130 PF03707 Bacterial signalling protein N terminal repeat APT56_09130 PF00990 Diguanylate cyclase, GGDEF domain APT56_09130 PF00563 EAL domain APT56_09135 PF00563 EAL domain APT56_09135 PF01590 GAF domain APT56_09135 PF00360 Phytochrome region APT56_09135 PF00990 Diguanylate cyclase, GGDEF domain APT56_09140 PF11254 Protein of unknown function (DUF3053) APT56_09145 PF10150 Ribonuclease E/G family APT56_09145 PF00575 S1 RNA binding domain APT56_09175 PF02954 Bacterial regulatory protein, Fis family APT56_09175 PF00072 Response regulator receiver domain APT56_09175 PF00158 Sigma-54 interaction domain APT56_09180 PF02743 Cache domain APT56_09180 PF00512 His Kinase A (phospho-acceptor) domain APT56_09180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_09185 PF00375 Sodium:dicarboxylate symporter family APT56_09190 PF02545 Maf-like protein APT56_09195 PF02590 Predicted SPOUT methyltransferase APT56_09205 PF01467 Cytidylyltransferase-like APT56_09210 PF01218 Coproporphyrinogen III oxidase APT56_09215 PF02843 Phosphoribosylglycinamide synthetase, C domain APT56_09215 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APT56_09215 PF02844 Phosphoribosylglycinamide synthetase, N domain APT56_09220 PF01709 Transcriptional regulator APT56_09225 PF05872 Bacterial protein of unknown function (DUF853) APT56_09230 PF00180 Isocitrate/isopropylmalate dehydrogenase APT56_09240 PF07690 Major Facilitator Superfamily APT56_09245 PF00529 HlyD membrane-fusion protein of T1SS APT56_09245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_09250 PF02321 Outer membrane efflux protein APT56_09255 PF01047 MarR family APT56_09270 PF00107 Zinc-binding dehydrogenase APT56_09270 PF08240 Alcohol dehydrogenase GroES-like domain APT56_09275 PF00171 Aldehyde dehydrogenase family APT56_09285 PF06433 Methylamine dehydrogenase heavy chain (MADH) APT56_09295 PF00578 AhpC/TSA family APT56_09300 PF02975 Methylamine dehydrogenase, L chain APT56_09310 PF14525 AraC-binding-like domain APT56_09315 PF02677 Epoxyqueuosine reductase QueH APT56_09320 PF03710 Glutamate-ammonia ligase adenylyltransferase APT56_09320 PF08335 GlnD PII-uridylyltransferase APT56_09335 PF07497 Rho termination factor, RNA-binding domain APT56_09335 PF07498 Rho termination factor, N-terminal domain APT56_09335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_09340 PF00085 Thioredoxin APT56_09345 PF00204 DNA gyrase B APT56_09345 PF00986 DNA gyrase B subunit, carboxyl terminus APT56_09345 PF01751 Toprim domain APT56_09345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_09355 PF00521 DNA gyrase/topoisomerase IV, subunit A APT56_09360 PF00440 Bacterial regulatory proteins, tetR family APT56_09360 PF08359 YsiA-like protein, C-terminal region APT56_09365 PF04235 Protein of unknown function (DUF418) APT56_09370 PF00202 Aminotransferase class-III APT56_09380 PF12802 MarR family APT56_09385 PF00583 Acetyltransferase (GNAT) family APT56_09390 PF00202 Aminotransferase class-III APT56_09395 PF06339 Ectoine synthase APT56_09400 PF05721 Phytanoyl-CoA dioxygenase (PhyH) APT56_09405 PF03476 MOSC N-terminal beta barrel domain APT56_09405 PF03473 MOSC domain APT56_09405 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_09410 PF00893 Small Multidrug Resistance protein APT56_09415 PF02261 Aspartate decarboxylase APT56_09420 PF00970 Oxidoreductase FAD-binding domain APT56_09420 PF00175 Oxidoreductase NAD-binding domain APT56_09420 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_09425 PF01266 FAD dependent oxidoreductase APT56_09430 PF13416 Bacterial extracellular solute-binding protein APT56_09440 PF02272 DHHA1 domain APT56_09440 PF01411 tRNA synthetases class II (A) APT56_09440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT56_09445 PF01206 Sulfurtransferase TusA APT56_09455 PF00886 Ribosomal protein S16 APT56_09460 PF01782 RimM N-terminal domain APT56_09465 PF01746 tRNA (Guanine-1)-methyltransferase APT56_09475 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_09480 PF00528 Binding-protein-dependent transport system inner membrane component APT56_09490 PF01266 FAD dependent oxidoreductase APT56_09495 PF00133 tRNA synthetases class I (I, L, M and V) APT56_09495 PF10458 Valyl tRNA synthetase tRNA binding arm APT56_09495 PF08264 Anticodon-binding domain of tRNA APT56_09500 PF00334 Nucleoside diphosphate kinase APT56_09505 PF04055 Radical SAM superfamily APT56_09515 PF04551 GcpE protein APT56_09520 PF03129 Anticodon binding domain APT56_09520 PF13393 Histidyl-tRNA synthetase APT56_09525 PF09976 Tetratricopeptide repeat-like domain APT56_09530 PF13360 PQQ-like domain APT56_09535 PF01926 50S ribosome-binding GTPase APT56_09535 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT56_09540 PF00155 Aminotransferase class I and II APT56_09545 PF17209 Hfq protein APT56_09550 PF16360 GTP-binding GTPase Middle Region APT56_09550 PF13167 GTP-binding GTPase N-terminal APT56_09550 PF01926 50S ribosome-binding GTPase APT56_09555 PF01145 SPFH domain / Band 7 family APT56_09555 PF12221 Bacterial membrane protein N terminal APT56_09560 PF01145 SPFH domain / Band 7 family APT56_09565 PF13393 Histidyl-tRNA synthetase APT56_09570 PF00709 Adenylosuccinate synthetase APT56_09575 PF00156 Phosphoribosyl transferase domain APT56_09580 PF01165 Ribosomal protein S21 APT56_09585 PF10410 DnaB-helicase binding domain of primase APT56_09585 PF08278 DNA primase DnaG DnaB-binding APT56_09585 PF08275 DNA primase catalytic core, N-terminal domain APT56_09585 PF01807 CHC2 zinc finger APT56_09590 PF04546 Sigma-70, non-essential region APT56_09590 PF03979 Sigma-70 factor, region 1.1 APT56_09590 PF00140 Sigma-70 factor, region 1.2 APT56_09590 PF04539 Sigma-70 region 3 APT56_09590 PF04542 Sigma-70 region 2 APT56_09590 PF04545 Sigma-70, region 4 APT56_09605 PF13439 Glycosyltransferase Family 4 APT56_09605 PF00534 Glycosyl transferases group 1 APT56_09620 PF01757 Acyltransferase family APT56_09650 PF13629 Pilus formation protein N terminal region APT56_09650 PF04972 BON domain APT56_09650 PF00263 Bacterial type II and III secretion system protein APT56_09655 PF00437 Type II/IV secretion system protein APT56_09675 PF01636 Phosphotransferase enzyme family APT56_09680 PF01207 Dihydrouridine synthase (Dus) APT56_09690 PF03631 Virulence factor BrkB APT56_09700 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APT56_09705 PF00486 Transcriptional regulatory protein, C terminal APT56_09705 PF00072 Response regulator receiver domain APT56_09710 PF00512 His Kinase A (phospho-acceptor) domain APT56_09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_09720 PF03707 Bacterial signalling protein N terminal repeat APT56_09720 PF00990 Diguanylate cyclase, GGDEF domain APT56_09720 PF00563 EAL domain APT56_09725 PF01264 Chorismate synthase APT56_09730 PF01435 Peptidase family M48 APT56_09755 PF00072 Response regulator receiver domain APT56_09755 PF00196 Bacterial regulatory proteins, luxR family APT56_09760 PF00529 HlyD membrane-fusion protein of T1SS APT56_09760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_09765 PF00005 ABC transporter APT56_09765 PF03412 Peptidase C39 family APT56_09765 PF00664 ABC transporter transmembrane region APT56_09775 PF02321 Outer membrane efflux protein APT56_09780 PF00330 Aconitase family (aconitate hydratase) APT56_09785 PF00694 Aconitase C-terminal domain APT56_09790 PF00180 Isocitrate/isopropylmalate dehydrogenase APT56_09795 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT56_09795 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT56_09805 PF01416 tRNA pseudouridine synthase APT56_09810 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_09815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APT56_09840 PF01966 HD domain APT56_09860 PF07859 alpha/beta hydrolase fold APT56_09860 PF13472 GDSL-like Lipase/Acylhydrolase family APT56_09865 PF00920 Dehydratase family APT56_09870 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_09875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_09880 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component APT56_09885 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APT56_09885 PF00356 Bacterial regulatory proteins, lacI family APT56_09890 PF00892 EamA-like transporter family APT56_09895 PF00850 Histone deacetylase domain APT56_09900 PF07883 Cupin domain APT56_09905 PF00005 ABC transporter APT56_09905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_09910 PF00528 Binding-protein-dependent transport system inner membrane component APT56_09910 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_09915 PF00528 Binding-protein-dependent transport system inner membrane component APT56_09920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_09925 PF00171 Aldehyde dehydrogenase family APT56_09930 PF07687 Peptidase dimerisation domain APT56_09930 PF01546 Peptidase family M20/M25/M40 APT56_09935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_09935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_09935 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_09940 PF07729 FCD domain APT56_09940 PF00392 Bacterial regulatory proteins, gntR family APT56_09955 PF04055 Radical SAM superfamily APT56_09955 PF06969 HemN C-terminal domain APT56_09960 PF00072 Response regulator receiver domain APT56_09960 PF00196 Bacterial regulatory proteins, luxR family APT56_09965 PF04321 RmlD substrate binding domain APT56_09970 PF02824 TGS domain APT56_09970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT56_09970 PF03129 Anticodon binding domain APT56_09970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT56_09975 PF05198 Translation initiation factor IF-3, N-terminal domain APT56_09975 PF00707 Translation initiation factor IF-3, C-terminal domain APT56_09980 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APT56_09980 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APT56_09990 PF00381 PTS HPr component phosphorylation site APT56_09995 PF00391 PEP-utilising enzyme, mobile domain APT56_09995 PF05524 PEP-utilising enzyme, N-terminal APT56_09995 PF02896 PEP-utilising enzyme, TIM barrel domain APT56_10000 PF00909 Ammonium Transporter Family APT56_10005 PF00543 Nitrogen regulatory protein P-II APT56_10015 PF04380 Membrane fusogenic activity APT56_10020 PF01078 Magnesium chelatase, subunit ChlI APT56_10020 PF13335 Magnesium chelatase, subunit ChlI C-terminal APT56_10025 PF01632 Ribosomal protein L35 APT56_10030 PF00453 Ribosomal protein L20 APT56_10035 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APT56_10035 PF01409 tRNA synthetases class II core domain (F) APT56_10040 PF01588 Putative tRNA binding domain APT56_10040 PF03147 Ferredoxin-fold anticodon binding domain APT56_10040 PF03484 tRNA synthetase B5 domain APT56_10040 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APT56_10040 PF03483 B3/4 domain APT56_10045 PF00216 Bacterial DNA-binding protein APT56_10065 PF17762 HTH domain found in ParB protein APT56_10065 PF02195 ParB-like nuclease domain APT56_10075 PF03837 RecT family APT56_10080 PF09588 YqaJ-like viral recombinase domain APT56_10125 PF05866 Endodeoxyribonuclease RusA APT56_10155 PF04233 Phage Mu protein F like protein APT56_10325 PF02567 Phenazine biosynthesis-like protein APT56_10330 PF00583 Acetyltransferase (GNAT) family APT56_10350 PF03401 Tripartite tricarboxylate transporter family receptor APT56_10375 PF01037 Lrp/AsnC ligand binding domain APT56_10405 PF03466 LysR substrate binding domain APT56_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10410 PF03401 Tripartite tricarboxylate transporter family receptor APT56_10425 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT56_10425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_10425 PF02142 MGS-like domain APT56_10435 PF00005 ABC transporter APT56_10450 PF03466 LysR substrate binding domain APT56_10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10455 PF13593 SBF-like CPA transporter family (DUF4137) APT56_10465 PF00005 ABC transporter APT56_10465 PF00664 ABC transporter transmembrane region APT56_10470 PF00248 Aldo/keto reductase family APT56_10485 PF00149 Calcineurin-like phosphoesterase APT56_10490 PF17092 Penicillin-binding protein OB-like domain APT56_10490 PF00912 Transglycosylase APT56_10490 PF00905 Penicillin binding protein transpeptidase domain APT56_10500 PF07690 Major Facilitator Superfamily APT56_10510 PF00535 Glycosyl transferase family 2 APT56_10515 PF01522 Polysaccharide deacetylase APT56_10515 PF14883 Hypothetical glycosyl hydrolase family 13 APT56_10525 PF17151 Periplasmic sensor domain APT56_10525 PF00990 Diguanylate cyclase, GGDEF domain APT56_10530 PF00326 Prolyl oligopeptidase family APT56_10545 PF00817 impB/mucB/samB family APT56_10545 PF11799 impB/mucB/samB family C-terminal domain APT56_10545 PF11798 IMS family HHH motif APT56_10550 PF09424 Yqey-like protein APT56_10560 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_10560 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_10575 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_10575 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_10615 PF07977 FabA-like domain APT56_10625 PF00550 Phosphopantetheine attachment site APT56_10630 PF00550 Phosphopantetheine attachment site APT56_10650 PF00970 Oxidoreductase FAD-binding domain APT56_10650 PF00042 Globin APT56_10650 PF00175 Oxidoreductase NAD-binding domain APT56_10655 PF02082 Transcriptional regulator APT56_10660 PF01266 FAD dependent oxidoreductase APT56_10665 PF00892 EamA-like transporter family APT56_10670 PF01619 Proline dehydrogenase APT56_10690 PF03466 LysR substrate binding domain APT56_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10695 PF07690 Major Facilitator Superfamily APT56_10705 PF03466 LysR substrate binding domain APT56_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10710 PF02798 Glutathione S-transferase, N-terminal domain APT56_10720 PF01638 HxlR-like helix-turn-helix APT56_10725 PF07690 Major Facilitator Superfamily APT56_10730 PF00005 ABC transporter APT56_10735 PF00528 Binding-protein-dependent transport system inner membrane component APT56_10750 PF12806 Acetyl-CoA dehydrogenase C-terminal like APT56_10750 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_10750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_10750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_10755 PF13193 AMP-binding enzyme C-terminal domain APT56_10755 PF00501 AMP-binding enzyme APT56_10765 PF01177 Asp/Glu/Hydantoin racemase APT56_10775 PF17831 Pyruvate dehydrogenase E1 component middle domain APT56_10775 PF00456 Transketolase, thiamine diphosphate binding domain APT56_10780 PF01810 LysE type translocator APT56_10785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_10785 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_10795 PF01810 LysE type translocator APT56_10800 PF00155 Aminotransferase class I and II APT56_10800 PF00392 Bacterial regulatory proteins, gntR family APT56_10810 PF00892 EamA-like transporter family APT56_10815 PF00892 EamA-like transporter family APT56_10825 PF07687 Peptidase dimerisation domain APT56_10825 PF01546 Peptidase family M20/M25/M40 APT56_10830 PF01554 MatE APT56_10835 PF00378 Enoyl-CoA hydratase/isomerase APT56_10850 PF00501 AMP-binding enzyme APT56_10850 PF13193 AMP-binding enzyme C-terminal domain APT56_10855 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain APT56_10855 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain APT56_10870 PF17885 Styrene monooxygenase A putative substrate binding domain APT56_10875 PF01613 Flavin reductase like domain APT56_10880 PF03275 UDP-galactopyranose mutase APT56_10900 PF12833 Helix-turn-helix domain APT56_10905 PF03401 Tripartite tricarboxylate transporter family receptor APT56_10910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_10910 PF01842 ACT domain APT56_10910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_10915 PF03737 Aldolase/RraA APT56_10925 PF01070 FMN-dependent dehydrogenase APT56_10935 PF00107 Zinc-binding dehydrogenase APT56_10935 PF08240 Alcohol dehydrogenase GroES-like domain APT56_10945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_10945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_10955 PF00202 Aminotransferase class-III APT56_10960 PF00005 ABC transporter APT56_10960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_10965 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_10965 PF00528 Binding-protein-dependent transport system inner membrane component APT56_10970 PF00528 Binding-protein-dependent transport system inner membrane component APT56_10975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10985 PF03466 LysR substrate binding domain APT56_10990 PF08447 PAS fold APT56_10990 PF05231 MASE1 APT56_10990 PF00990 Diguanylate cyclase, GGDEF domain APT56_10990 PF13426 PAS domain APT56_10990 PF00563 EAL domain APT56_10990 PF08448 PAS fold APT56_10995 PF05726 Pirin C-terminal cupin domain APT56_10995 PF02678 Pirin APT56_11010 PF03918 Cytochrome C biogenesis protein APT56_11015 PF08534 Redoxin APT56_11020 PF01578 Cytochrome C assembly protein APT56_11020 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APT56_11025 PF03100 CcmE APT56_11035 PF01578 Cytochrome C assembly protein APT56_11040 PF03379 CcmB protein APT56_11045 PF00005 ABC transporter APT56_11050 PF03264 NapC/NirT cytochrome c family, N-terminal region APT56_11055 PF01568 Molydopterin dinucleotide binding domain APT56_11055 PF00384 Molybdopterin oxidoreductase APT56_11055 PF18364 Molybdopterin oxidoreductase N-terminal domain APT56_11060 PF02613 Nitrate reductase delta subunit APT56_11065 PF13247 4Fe-4S dicluster domain APT56_11070 PF03916 Polysulphide reductase, NrfD APT56_11075 PF01568 Molydopterin dinucleotide binding domain APT56_11075 PF00384 Molybdopterin oxidoreductase APT56_11075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT56_11080 PF05853 beta-keto acid cleavage enzyme APT56_11085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_11085 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain APT56_11085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_11090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11090 PF03466 LysR substrate binding domain APT56_11100 PF00920 Dehydratase family APT56_11105 PF03401 Tripartite tricarboxylate transporter family receptor APT56_11110 PF00563 EAL domain APT56_11110 PF13426 PAS domain APT56_11110 PF00990 Diguanylate cyclase, GGDEF domain APT56_11115 PF00378 Enoyl-CoA hydratase/isomerase APT56_11120 PF07715 TonB-dependent Receptor Plug Domain APT56_11120 PF00593 TonB dependent receptor APT56_11130 PF03401 Tripartite tricarboxylate transporter family receptor APT56_11135 PF03466 LysR substrate binding domain APT56_11135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11140 PF02515 CoA-transferase family III APT56_11145 PF00378 Enoyl-CoA hydratase/isomerase APT56_11155 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family APT56_11165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11165 PF03466 LysR substrate binding domain APT56_11175 PF07715 TonB-dependent Receptor Plug Domain APT56_11175 PF00593 TonB dependent receptor APT56_11175 PF07660 Secretin and TonB N terminus short domain APT56_11185 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase APT56_11190 PF00293 NUDIX domain APT56_11190 PF09297 NADH pyrophosphatase zinc ribbon domain APT56_11195 PF00440 Bacterial regulatory proteins, tetR family APT56_11195 PF02909 Tetracyclin repressor-like, C-terminal domain APT56_11200 PF07690 Major Facilitator Superfamily APT56_11210 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_11215 PF00083 Sugar (and other) transporter APT56_11215 PF07690 Major Facilitator Superfamily APT56_11220 PF01323 DSBA-like thioredoxin domain APT56_11235 PF00501 AMP-binding enzyme APT56_11235 PF13193 AMP-binding enzyme C-terminal domain APT56_11245 PF03401 Tripartite tricarboxylate transporter family receptor APT56_11260 PF01965 DJ-1/PfpI family APT56_11265 PF01965 DJ-1/PfpI family APT56_11270 PF01037 Lrp/AsnC ligand binding domain APT56_11280 PF00005 ABC transporter APT56_11280 PF00664 ABC transporter transmembrane region APT56_11285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_11290 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_11305 PF13193 AMP-binding enzyme C-terminal domain APT56_11305 PF00501 AMP-binding enzyme APT56_11325 PF02417 Chromate transporter APT56_11330 PF09828 Chromate resistance exported protein APT56_11335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11335 PF03466 LysR substrate binding domain APT56_11340 PF01804 Penicillin amidase APT56_11345 PF00664 ABC transporter transmembrane region APT56_11345 PF00005 ABC transporter APT56_11350 PF03466 LysR substrate binding domain APT56_11350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11360 PF01571 Aminomethyltransferase folate-binding domain APT56_11360 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT56_11360 PF16350 FAD dependent oxidoreductase central domain APT56_11360 PF01266 FAD dependent oxidoreductase APT56_11365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11365 PF03466 LysR substrate binding domain APT56_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11375 PF03466 LysR substrate binding domain APT56_11380 PF07690 Major Facilitator Superfamily APT56_11385 PF07690 Major Facilitator Superfamily APT56_11390 PF08361 MAATS-type transcriptional repressor, C-terminal region APT56_11390 PF00440 Bacterial regulatory proteins, tetR family APT56_11400 PF00356 Bacterial regulatory proteins, lacI family APT56_11405 PF07690 Major Facilitator Superfamily APT56_11410 PF01425 Amidase APT56_11420 PF01914 MarC family integral membrane protein APT56_11440 PF01925 Sulfite exporter TauE/SafE APT56_11460 PF03060 Nitronate monooxygenase APT56_11495 PF00392 Bacterial regulatory proteins, gntR family APT56_11495 PF07729 FCD domain APT56_11500 PF00171 Aldehyde dehydrogenase family APT56_11505 PF00677 Lumazine binding domain APT56_11515 PF07690 Major Facilitator Superfamily APT56_11520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11520 PF03466 LysR substrate binding domain APT56_11525 PF13302 Acetyltransferase (GNAT) domain APT56_11530 PF00403 Heavy-metal-associated domain APT56_11535 PF13411 MerR HTH family regulatory protein APT56_11560 PF07715 TonB-dependent Receptor Plug Domain APT56_11560 PF00593 TonB dependent receptor APT56_11565 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal APT56_11565 PF00676 Dehydrogenase E1 component APT56_11570 PF02780 Transketolase, C-terminal domain APT56_11570 PF02779 Transketolase, pyrimidine binding domain APT56_11575 PF02817 e3 binding domain APT56_11575 PF00364 Biotin-requiring enzyme APT56_11575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT56_11580 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_11580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_11590 PF14698 Argininosuccinate lyase C-terminal APT56_11590 PF00206 Lyase APT56_11595 PF00924 Mechanosensitive ion channel APT56_11600 PF02540 NAD synthase APT56_11600 PF00795 Carbon-nitrogen hydrolase APT56_11605 PF00543 Nitrogen regulatory protein P-II APT56_11610 PF04072 Leucine carboxyl methyltransferase APT56_11625 PF00482 Type II secretion system (T2SS), protein F APT56_11630 PF03958 Bacterial type II/III secretion system short domain APT56_11630 PF00263 Bacterial type II and III secretion system protein APT56_11635 PF00437 Type II/IV secretion system protein APT56_11665 PF03934 Type II secretion system (T2SS), protein K APT56_11670 PF11612 Type II secretion system (T2SS), protein J APT56_11670 PF07963 Prokaryotic N-terminal methylation motif APT56_11675 PF07963 Prokaryotic N-terminal methylation motif APT56_11675 PF02501 Type II secretion system (T2SS), protein I APT56_11680 PF07963 Prokaryotic N-terminal methylation motif APT56_11680 PF12019 Type II transport protein GspH APT56_11685 PF08334 Type II secretion system (T2SS), protein G APT56_11685 PF07963 Prokaryotic N-terminal methylation motif APT56_11710 PF05506 Domain of unknown function (DUF756) APT56_11710 PF04185 Phosphoesterase family APT56_11715 PF03466 LysR substrate binding domain APT56_11715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_11730 PF00528 Binding-protein-dependent transport system inner membrane component APT56_11740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_11740 PF00005 ABC transporter APT56_11745 PF07152 YaeQ protein APT56_11765 PF07690 Major Facilitator Superfamily APT56_11770 PF04345 Chorismate lyase APT56_11775 PF01479 S4 domain APT56_11775 PF00849 RNA pseudouridylate synthase APT56_11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11780 PF03466 LysR substrate binding domain APT56_11785 PF00529 HlyD membrane-fusion protein of T1SS APT56_11785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_11790 PF00873 AcrB/AcrD/AcrF family APT56_11795 PF02321 Outer membrane efflux protein APT56_11800 PF04226 Transglycosylase associated protein APT56_11805 PF02630 SCO1/SenC APT56_11815 PF01432 Peptidase family M3 APT56_11820 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APT56_11820 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APT56_11825 PF00072 Response regulator receiver domain APT56_11825 PF00196 Bacterial regulatory proteins, luxR family APT56_11830 PF00989 PAS fold APT56_11830 PF00512 His Kinase A (phospho-acceptor) domain APT56_11830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_11835 PF00456 Transketolase, thiamine diphosphate binding domain APT56_11835 PF17831 Pyruvate dehydrogenase E1 component middle domain APT56_11840 PF02817 e3 binding domain APT56_11840 PF00364 Biotin-requiring enzyme APT56_11840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT56_11845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_11845 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_11855 PF03466 LysR substrate binding domain APT56_11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11870 PF08884 Flagellin D3 domain APT56_11870 PF00669 Bacterial flagellin N-terminal helical region APT56_11870 PF00700 Bacterial flagellin C-terminal helical region APT56_11875 PF13847 Methyltransferase domain APT56_11875 PF10119 Predicted methyltransferase regulatory domain APT56_11880 PF04539 Sigma-70 region 3 APT56_11880 PF04545 Sigma-70, region 4 APT56_11880 PF04542 Sigma-70 region 2 APT56_11885 PF05247 Flagellar transcriptional activator (FlhD) APT56_11890 PF05280 Flagellar transcriptional activator (FlhC) APT56_11895 PF01618 MotA/TolQ/ExbB proton channel family APT56_11900 PF00691 OmpA family APT56_11900 PF13677 Membrane MotB of proton-channel complex MotA/MotB APT56_11905 PF00072 Response regulator receiver domain APT56_11910 PF01627 Hpt domain APT56_11910 PF02895 Signal transducing histidine kinase, homodimeric domain APT56_11910 PF01584 CheW-like domain APT56_11910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_11910 PF09078 CheY binding APT56_11915 PF01584 CheW-like domain APT56_11920 PF02203 Tar ligand binding domain homologue APT56_11920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_11920 PF00672 HAMP domain APT56_11925 PF03705 CheR methyltransferase, all-alpha domain APT56_11925 PF01739 CheR methyltransferase, SAM binding domain APT56_11930 PF01339 CheB methylesterase APT56_11930 PF00072 Response regulator receiver domain APT56_11935 PF00072 Response regulator receiver domain APT56_11940 PF04344 Chemotaxis phosphatase, CheZ APT56_11945 PF16591 Helical bimodular sensor domain APT56_11945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_11945 PF00672 HAMP domain APT56_11950 PF01312 FlhB HrpN YscU SpaS Family APT56_11955 PF00771 FHIPEP family APT56_11960 PF00448 SRP54-type protein, GTPase domain APT56_11970 PF04316 Anti-sigma-28 factor, FlgM APT56_11980 PF00460 Flagella basal body rod protein APT56_11985 PF00460 Flagella basal body rod protein APT56_11985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_11990 PF03963 Flagellar hook capping protein - N-terminal region APT56_11990 PF13861 FlgD Tudor-like domain APT56_11990 PF13860 FlgD Ig-like domain APT56_11995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_11995 PF07559 Flagellar basal body protein FlaE APT56_11995 PF00460 Flagella basal body rod protein APT56_12000 PF00460 Flagella basal body rod protein APT56_12000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_12005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_12005 PF00460 Flagella basal body rod protein APT56_12010 PF02107 Flagellar L-ring protein APT56_12015 PF02119 Flagellar P-ring protein APT56_12020 PF10135 Rod binding protein APT56_12020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APT56_12025 PF00460 Flagella basal body rod protein APT56_12025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_12030 PF00669 Bacterial flagellin N-terminal helical region APT56_12035 PF02203 Tar ligand binding domain homologue APT56_12035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12035 PF00672 HAMP domain APT56_12040 PF02203 Tar ligand binding domain homologue APT56_12040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12040 PF00672 HAMP domain APT56_12050 PF02203 Tar ligand binding domain homologue APT56_12050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12050 PF00672 HAMP domain APT56_12055 PF08447 PAS fold APT56_12055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12060 PF01311 Bacterial export proteins, family 1 APT56_12065 PF01313 Bacterial export proteins, family 3 APT56_12070 PF00813 FliP family APT56_12075 PF04347 Flagellar biosynthesis protein, FliO APT56_12080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APT56_12080 PF16973 Flagellar motor switch protein FliN N-terminal APT56_12085 PF02154 Flagellar motor switch protein FliM APT56_12085 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APT56_12090 PF03748 Flagellar basal body-associated protein FliL APT56_12105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_12105 PF18269 T3SS EscN ATPase C-terminal domain APT56_12115 PF01706 FliG C-terminal domain APT56_12115 PF14841 FliG middle domain APT56_12115 PF14842 FliG N-terminal domain APT56_12120 PF01514 Secretory protein of YscJ/FliF family APT56_12120 PF08345 Flagellar M-ring protein C-terminal APT56_12125 PF02049 Flagellar hook-basal body complex protein FliE APT56_12135 PF01312 FlhB HrpN YscU SpaS Family APT56_12150 PF02561 Flagellar protein FliS APT56_12155 PF07195 Flagellar hook-associated protein 2 C-terminus APT56_12155 PF02465 Flagellar hook-associated protein 2 N-terminus APT56_12170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_12170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_12170 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_12175 PF02515 CoA-transferase family III APT56_12180 PF03401 Tripartite tricarboxylate transporter family receptor APT56_12190 PF08245 Mur ligase middle domain APT56_12190 PF02875 Mur ligase family, glutamate ligase domain APT56_12200 PF02674 Colicin V production protein APT56_12205 PF00156 Phosphoribosyl transferase domain APT56_12210 PF01863 Protein of unknown function DUF45 APT56_12220 PF02600 Disulfide bond formation protein DsbB APT56_12230 PF01909 Nucleotidyltransferase domain APT56_12230 PF08335 GlnD PII-uridylyltransferase APT56_12230 PF01966 HD domain APT56_12235 PF00557 Metallopeptidase family M24 APT56_12240 PF00318 Ribosomal protein S2 APT56_12245 PF00889 Elongation factor TS APT56_12250 PF00696 Amino acid kinase family APT56_12255 PF01765 Ribosome recycling factor APT56_12260 PF01255 Putative undecaprenyl diphosphate synthase APT56_12270 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APT56_12270 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APT56_12270 PF13288 DXP reductoisomerase C-terminal domain APT56_12275 PF02163 Peptidase family M50 APT56_12275 PF17820 PDZ domain APT56_12280 PF07244 Surface antigen variable number repeat APT56_12280 PF01103 Surface antigen APT56_12285 PF03938 Outer membrane protein (OmpH-like) APT56_12290 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APT56_12290 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_12290 PF14602 Hexapeptide repeat of succinyl-transferase APT56_12295 PF07977 FabA-like domain APT56_12300 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APT56_12300 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_12305 PF02684 Lipid-A-disaccharide synthetase APT56_12310 PF01351 Ribonuclease HII APT56_12315 PF00588 SpoU rRNA Methylase family APT56_12315 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT56_12335 PF03618 Kinase/pyrophosphorylase APT56_12340 PF02896 PEP-utilising enzyme, TIM barrel domain APT56_12340 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT56_12340 PF00391 PEP-utilising enzyme, mobile domain APT56_12345 PF00593 TonB dependent receptor APT56_12345 PF07715 TonB-dependent Receptor Plug Domain APT56_12355 PF04542 Sigma-70 region 2 APT56_12355 PF08281 Sigma-70, region 4 APT56_12360 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT56_12360 PF12833 Helix-turn-helix domain APT56_12360 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT56_12360 PF02805 Metal binding domain of Ada APT56_12365 PF00117 Glutamine amidotransferase class-I APT56_12365 PF00958 GMP synthase C terminal domain APT56_12365 PF02540 NAD synthase APT56_12375 PF01145 SPFH domain / Band 7 family APT56_12380 PF00990 Diguanylate cyclase, GGDEF domain APT56_12385 PF01668 SmpB protein APT56_12390 PF03364 Polyketide cyclase / dehydrase and lipid transport APT56_12395 PF03658 RnfH family Ubiquitin APT56_12400 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_12400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_12400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_12405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_12405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_12405 PF00378 Enoyl-CoA hydratase/isomerase APT56_12410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_12410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_12425 PF01571 Aminomethyltransferase folate-binding domain APT56_12430 PF02618 YceG-like family APT56_12435 PF02223 Thymidylate kinase APT56_12440 PF12169 DNA polymerase III subunits gamma and tau domain III APT56_12445 PF01026 TatD related DNase APT56_12460 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_12470 PF00005 ABC transporter APT56_12475 PF00491 Arginase family APT56_12480 PF08031 Berberine and berberine like APT56_12480 PF01565 FAD binding domain APT56_12485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APT56_12485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT56_12495 PF10437 Bacterial lipoate protein ligase C-terminus APT56_12495 PF03099 Biotin/lipoate A/B protein ligase family APT56_12510 PF00043 Glutathione S-transferase, C-terminal domain APT56_12510 PF02798 Glutathione S-transferase, N-terminal domain APT56_12520 PF01037 Lrp/AsnC ligand binding domain APT56_12525 PF00255 Glutathione peroxidase APT56_12530 PF07690 Major Facilitator Superfamily APT56_12550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_12550 PF03466 LysR substrate binding domain APT56_12555 PF07005 Sugar-binding N-terminal domain APT56_12555 PF17042 Nucleotide-binding C-terminal domain APT56_12560 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT56_12570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12570 PF08447 PAS fold APT56_12575 PF03441 FAD binding domain of DNA photolyase APT56_12575 PF00875 DNA photolyase APT56_12580 PF02515 CoA-transferase family III APT56_12585 PF00578 AhpC/TSA family APT56_12600 PF00270 DEAD/DEAH box helicase APT56_12600 PF00271 Helicase conserved C-terminal domain APT56_12600 PF03880 DbpA RNA binding domain APT56_12605 PF09339 IclR helix-turn-helix domain APT56_12605 PF01614 Bacterial transcriptional regulator APT56_12610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_12610 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_12610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_12615 PF01515 Phosphate acetyl/butaryl transferase APT56_12620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_12625 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12630 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_12630 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_12635 PF00005 ABC transporter APT56_12640 PF01979 Amidohydrolase family APT56_12645 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT56_12645 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT56_12660 PF02395 Immunoglobulin A1 protease APT56_12660 PF03797 Autotransporter beta-domain APT56_12660 PF13018 Extended Signal Peptide of Type V secretion system APT56_12660 PF03797 Autotransporter beta-domain APT56_12660 PF13018 Extended Signal Peptide of Type V secretion system APT56_12660 PF02395 Immunoglobulin A1 protease APT56_12665 PF00155 Aminotransferase class I and II APT56_12665 PF00392 Bacterial regulatory proteins, gntR family APT56_12675 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12680 PF00005 ABC transporter APT56_12685 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APT56_12690 PF03466 LysR substrate binding domain APT56_12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_12695 PF00892 EamA-like transporter family APT56_12700 PF01227 GTP cyclohydrolase I APT56_12705 PF00196 Bacterial regulatory proteins, luxR family APT56_12705 PF00072 Response regulator receiver domain APT56_12710 PF07730 Histidine kinase APT56_12710 PF17200 Single Cache domain 2 APT56_12715 PF13722 5TM C-terminal transporter carbon starvation CstA APT56_12715 PF02554 Carbon starvation protein CstA APT56_12720 PF04328 Selenoprotein, putative APT56_12725 PF00892 EamA-like transporter family APT56_12730 PF00155 Aminotransferase class I and II APT56_12730 PF00392 Bacterial regulatory proteins, gntR family APT56_12750 PF00210 Ferritin-like domain APT56_12760 PF12951 Passenger-associated-transport-repeat APT56_12765 PF01625 Peptide methionine sulfoxide reductase APT56_12770 PF01641 SelR domain APT56_12780 PF00174 Oxidoreductase molybdopterin binding domain APT56_12785 PF01292 Prokaryotic cytochrome b561 APT56_12790 PF00486 Transcriptional regulatory protein, C terminal APT56_12790 PF00072 Response regulator receiver domain APT56_12795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_12795 PF00672 HAMP domain APT56_12795 PF18698 Histidine kinase sensor domain APT56_12795 PF00512 His Kinase A (phospho-acceptor) domain APT56_12795 PF00989 PAS fold APT56_12800 PF03060 Nitronate monooxygenase APT56_12815 PF00368 Hydroxymethylglutaryl-coenzyme A reductase APT56_12820 PF00155 Aminotransferase class I and II APT56_12820 PF00392 Bacterial regulatory proteins, gntR family APT56_12850 PF03401 Tripartite tricarboxylate transporter family receptor APT56_12855 PF07687 Peptidase dimerisation domain APT56_12855 PF01546 Peptidase family M20/M25/M40 APT56_12860 PF03466 LysR substrate binding domain APT56_12860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_12865 PF00873 AcrB/AcrD/AcrF family APT56_12870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_12870 PF03466 LysR substrate binding domain APT56_12875 PF01494 FAD binding domain APT56_12890 PF07690 Major Facilitator Superfamily APT56_12895 PF07690 Major Facilitator Superfamily APT56_12900 PF14710 Respiratory nitrate reductase alpha N-terminal APT56_12900 PF01568 Molydopterin dinucleotide binding domain APT56_12900 PF00384 Molybdopterin oxidoreductase APT56_12905 PF13247 4Fe-4S dicluster domain APT56_12905 PF14711 Respiratory nitrate reductase beta C-terminal APT56_12910 PF02613 Nitrate reductase delta subunit APT56_12915 PF02665 Nitrate reductase gamma subunit APT56_12920 PF09312 SurA N-terminal domain APT56_12920 PF00639 PPIC-type PPIASE domain APT56_12925 PF04055 Radical SAM superfamily APT56_12925 PF06463 Molybdenum Cofactor Synthesis C APT56_12930 PF00484 Carbonic anhydrase APT56_12935 PF03205 Molybdopterin guanine dinucleotide synthesis protein B APT56_12940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_12940 PF07730 Histidine kinase APT56_12940 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APT56_12940 PF00672 HAMP domain APT56_12945 PF00072 Response regulator receiver domain APT56_12945 PF00196 Bacterial regulatory proteins, luxR family APT56_12965 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12970 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_12980 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_12985 PF00561 alpha/beta hydrolase fold APT56_13005 PF00005 ABC transporter APT56_13015 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13030 PF00392 Bacterial regulatory proteins, gntR family APT56_13030 PF07729 FCD domain APT56_13035 PF00920 Dehydratase family APT56_13040 PF03737 Aldolase/RraA APT56_13045 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13055 PF00701 Dihydrodipicolinate synthetase family APT56_13060 PF07729 FCD domain APT56_13060 PF00392 Bacterial regulatory proteins, gntR family APT56_13065 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13075 PF03466 LysR substrate binding domain APT56_13090 PF13649 Methyltransferase domain APT56_13100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13100 PF03466 LysR substrate binding domain APT56_13105 PF01042 Endoribonuclease L-PSP APT56_13125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13125 PF03466 LysR substrate binding domain APT56_13130 PF01470 Pyroglutamyl peptidase APT56_13135 PF00561 alpha/beta hydrolase fold APT56_13140 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13145 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_13150 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_13155 PF02913 FAD linked oxidases, C-terminal domain APT56_13155 PF01565 FAD binding domain APT56_13165 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13185 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_13195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13195 PF03466 LysR substrate binding domain APT56_13205 PF00581 Rhodanese-like domain APT56_13240 PF08281 Sigma-70, region 4 APT56_13240 PF04542 Sigma-70 region 2 APT56_13260 PF00196 Bacterial regulatory proteins, luxR family APT56_13260 PF00072 Response regulator receiver domain APT56_13265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_13265 PF00512 His Kinase A (phospho-acceptor) domain APT56_13265 PF00989 PAS fold APT56_13280 PF03466 LysR substrate binding domain APT56_13280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13285 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT56_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13300 PF03466 LysR substrate binding domain APT56_13305 PF13193 AMP-binding enzyme C-terminal domain APT56_13305 PF00501 AMP-binding enzyme APT56_13310 PF00083 Sugar (and other) transporter APT56_13315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT56_13315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT56_13325 PF00578 AhpC/TSA family APT56_13330 PF03060 Nitronate monooxygenase APT56_13340 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13350 PF00005 ABC transporter APT56_13355 PF01032 FecCD transport family APT56_13360 PF01032 FecCD transport family APT56_13365 PF01497 Periplasmic binding protein APT56_13370 PF07715 TonB-dependent Receptor Plug Domain APT56_13370 PF00593 TonB dependent receptor APT56_13370 PF07660 Secretin and TonB N terminus short domain APT56_13375 PF07690 Major Facilitator Superfamily APT56_13405 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) APT56_13410 PF00005 ABC transporter APT56_13410 PF03459 TOBE domain APT56_13415 PF03649 Uncharacterised protein family (UPF0014) APT56_13420 PF09335 SNARE associated Golgi protein APT56_13425 PF03971 Monomeric isocitrate dehydrogenase APT56_13430 PF00072 Response regulator receiver domain APT56_13430 PF00486 Transcriptional regulatory protein, C terminal APT56_13435 PF00585 C-terminal regulatory domain of Threonine dehydratase APT56_13435 PF00291 Pyridoxal-phosphate dependent enzyme APT56_13440 PF00005 ABC transporter APT56_13445 PF00127 Copper binding proteins, plastocyanin/azurin family APT56_13450 PF01032 FecCD transport family APT56_13460 PF00072 Response regulator receiver domain APT56_13460 PF00486 Transcriptional regulatory protein, C terminal APT56_13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_13465 PF00512 His Kinase A (phospho-acceptor) domain APT56_13470 PF07715 TonB-dependent Receptor Plug Domain APT56_13470 PF00593 TonB dependent receptor APT56_13475 PF00005 ABC transporter APT56_13480 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13485 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13495 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_13500 PF07702 UTRA domain APT56_13500 PF00392 Bacterial regulatory proteins, gntR family APT56_13505 PF00701 Dihydrodipicolinate synthetase family APT56_13510 PF00171 Aldehyde dehydrogenase family APT56_13515 PF00701 Dihydrodipicolinate synthetase family APT56_13520 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus APT56_13520 PF08666 SAF domain APT56_13525 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13545 PF05425 Copper resistance protein D APT56_13555 PF00958 GMP synthase C terminal domain APT56_13555 PF00117 Glutamine amidotransferase class-I APT56_13565 PF00005 ABC transporter APT56_13570 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13575 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13580 PF16868 NMT1-like family APT56_13590 PF00149 Calcineurin-like phosphoesterase APT56_13600 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13605 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13620 PF00593 TonB dependent receptor APT56_13620 PF07715 TonB-dependent Receptor Plug Domain APT56_13630 PF00005 ABC transporter APT56_13645 PF07715 TonB-dependent Receptor Plug Domain APT56_13645 PF00593 TonB dependent receptor APT56_13655 PF00128 Alpha amylase, catalytic domain APT56_13660 PF02446 4-alpha-glucanotransferase APT56_13665 PF00128 Alpha amylase, catalytic domain APT56_13665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT56_13665 PF11941 Domain of unknown function (DUF3459) APT56_13670 PF00128 Alpha amylase, catalytic domain APT56_13670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT56_13675 PF00128 Alpha amylase, catalytic domain APT56_13675 PF02806 Alpha amylase, C-terminal all-beta domain APT56_13675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT56_13680 PF00128 Alpha amylase, catalytic domain APT56_13680 PF16657 Maltogenic Amylase, C-terminal domain APT56_13685 PF00128 Alpha amylase, catalytic domain APT56_13685 PF11896 Domain of unknown function (DUF3416) APT56_13690 PF08323 Starch synthase catalytic domain APT56_13690 PF00534 Glycosyl transferases group 1 APT56_13695 PF03706 Lysylphosphatidylglycerol synthase TM region APT56_13700 PF13091 PLD-like domain APT56_13705 PF03372 Endonuclease/Exonuclease/phosphatase family APT56_13710 PF01699 Sodium/calcium exchanger protein APT56_13720 PF05974 Domain of unknown function (DUF892) APT56_13730 PF00342 Phosphoglucose isomerase APT56_13740 PF00924 Mechanosensitive ion channel APT56_13760 PF00483 Nucleotidyl transferase APT56_13765 PF18011 C-terminal domain found in long catalases APT56_13765 PF06628 Catalase-related immune-responsive APT56_13765 PF00199 Catalase APT56_13770 PF00582 Universal stress protein family APT56_13780 PF00582 Universal stress protein family APT56_13790 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APT56_13790 PF09363 XFP C-terminal domain APT56_13790 PF09364 XFP N-terminal domain APT56_13795 PF10996 Beta-Casp domain APT56_13795 PF00753 Metallo-beta-lactamase superfamily APT56_13795 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APT56_13800 PF00571 CBS domain APT56_13810 PF17200 Single Cache domain 2 APT56_13810 PF07730 Histidine kinase APT56_13815 PF00196 Bacterial regulatory proteins, luxR family APT56_13815 PF00072 Response regulator receiver domain APT56_13820 PF00027 Cyclic nucleotide-binding domain APT56_13820 PF13545 Crp-like helix-turn-helix domain APT56_13835 PF00582 Universal stress protein family APT56_13840 PF01566 Natural resistance-associated macrophage protein APT56_13850 PF00317 Ribonucleotide reductase, all-alpha domain APT56_13850 PF03477 ATP cone domain APT56_13850 PF02867 Ribonucleotide reductase, barrel domain APT56_13865 PF00011 Hsp20/alpha crystallin family APT56_13885 PF00043 Glutathione S-transferase, C-terminal domain APT56_13885 PF13417 Glutathione S-transferase, N-terminal domain APT56_13890 PF01810 LysE type translocator APT56_13900 PF12706 Beta-lactamase superfamily domain APT56_13910 PF06039 Malate:quinone oxidoreductase (Mqo) APT56_13920 PF00083 Sugar (and other) transporter APT56_13920 PF07690 Major Facilitator Superfamily APT56_13925 PF00850 Histone deacetylase domain APT56_13930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13930 PF03466 LysR substrate binding domain APT56_13935 PF02798 Glutathione S-transferase, N-terminal domain APT56_13935 PF00043 Glutathione S-transferase, C-terminal domain APT56_13960 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13965 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_13975 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_13975 PF14759 Reductase C-terminal APT56_13980 PF00355 Rieske [2Fe-2S] domain APT56_13985 PF00355 Rieske [2Fe-2S] domain APT56_13985 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_13990 PF00866 Ring hydroxylating beta subunit APT56_14000 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT56_14005 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_14020 PF01266 FAD dependent oxidoreductase APT56_14025 PF01042 Endoribonuclease L-PSP APT56_14030 PF07364 Metallopeptidase family M81 APT56_14030 PF07171 MlrC C-terminus APT56_14035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_14040 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14045 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14045 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_14050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_14050 PF00005 ABC transporter APT56_14055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_14055 PF00005 ABC transporter APT56_14060 PF07969 Amidohydrolase family APT56_14070 PF13520 Amino acid permease APT56_14080 PF15887 Putative zinc-binding metallo-peptidase APT56_14080 PF10005 zinc-ribbon domain APT56_14085 PF02016 LD-carboxypeptidase N-terminal domain APT56_14085 PF17676 LD-carboxypeptidase C-terminal domain APT56_14095 PF01594 AI-2E family transporter APT56_14125 PF03797 Autotransporter beta-domain APT56_14125 PF16168 Adhesin of bacterial autotransporter system, probable stalk APT56_14125 PF13018 Extended Signal Peptide of Type V secretion system APT56_14155 PF00990 Diguanylate cyclase, GGDEF domain APT56_14165 PF00376 MerR family regulatory protein APT56_14165 PF09278 MerR, DNA binding APT56_14170 PF07694 5TMR of 5TMR-LYT APT56_14170 PF00990 Diguanylate cyclase, GGDEF domain APT56_14190 PF01970 Tripartite tricarboxylate transporter TctA family APT56_14200 PF07690 Major Facilitator Superfamily APT56_14210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14210 PF03466 LysR substrate binding domain APT56_14225 PF00672 HAMP domain APT56_14225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_14225 PF00512 His Kinase A (phospho-acceptor) domain APT56_14230 PF12951 Passenger-associated-transport-repeat APT56_14230 PF12951 Passenger-associated-transport-repeat APT56_14235 PF03741 Integral membrane protein TerC family APT56_14235 PF03471 Transporter associated domain APT56_14240 PF13618 Gluconate 2-dehydrogenase subunit 3 APT56_14245 PF00732 GMC oxidoreductase APT56_14245 PF05199 GMC oxidoreductase APT56_14250 PF00034 Cytochrome c APT56_14260 PF02308 MgtC family APT56_14270 PF07715 TonB-dependent Receptor Plug Domain APT56_14270 PF00593 TonB dependent receptor APT56_14285 PF00563 EAL domain APT56_14285 PF00990 Diguanylate cyclase, GGDEF domain APT56_14285 PF03707 Bacterial signalling protein N terminal repeat APT56_14285 PF13188 PAS domain APT56_14290 PF12805 FUSC-like inner membrane protein yccS APT56_14300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_14300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_14310 PF01965 DJ-1/PfpI family APT56_14360 PF00072 Response regulator receiver domain APT56_14360 PF00158 Sigma-54 interaction domain APT56_14360 PF02954 Bacterial regulatory protein, Fis family APT56_14365 PF00158 Sigma-54 interaction domain APT56_14365 PF02954 Bacterial regulatory protein, Fis family APT56_14370 PF04552 Sigma-54, DNA binding domain APT56_14370 PF04963 Sigma-54 factor, core binding domain APT56_14370 PF00309 Sigma-54 factor, Activator interacting domain (AID) APT56_14380 PF00512 His Kinase A (phospho-acceptor) domain APT56_14380 PF00072 Response regulator receiver domain APT56_14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_14380 PF13188 PAS domain APT56_14380 PF08448 PAS fold APT56_14390 PF05247 Flagellar transcriptional activator (FlhD) APT56_14395 PF07690 Major Facilitator Superfamily APT56_14400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14400 PF03466 LysR substrate binding domain APT56_14410 PF00563 EAL domain APT56_14410 PF03707 Bacterial signalling protein N terminal repeat APT56_14410 PF00990 Diguanylate cyclase, GGDEF domain APT56_14415 PF00793 DAHP synthetase I family APT56_14420 PF01266 FAD dependent oxidoreductase APT56_14435 PF00486 Transcriptional regulatory protein, C terminal APT56_14435 PF00072 Response regulator receiver domain APT56_14440 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_14445 PF12848 ABC transporter APT56_14445 PF00005 ABC transporter APT56_14455 PF02666 Phosphatidylserine decarboxylase APT56_14480 PF01070 FMN-dependent dehydrogenase APT56_14485 PF00149 Calcineurin-like phosphoesterase APT56_14495 PF07690 Major Facilitator Superfamily APT56_14500 PF00990 Diguanylate cyclase, GGDEF domain APT56_14500 PF17151 Periplasmic sensor domain APT56_14505 PF03180 NLPA lipoprotein APT56_14510 PF00491 Arginase family APT56_14525 PF08240 Alcohol dehydrogenase GroES-like domain APT56_14525 PF00107 Zinc-binding dehydrogenase APT56_14530 PF04241 Protein of unknown function (DUF423) APT56_14535 PF00892 EamA-like transporter family APT56_14545 PF07995 Glucose / Sorbosone dehydrogenase APT56_14550 PF02798 Glutathione S-transferase, N-terminal domain APT56_14550 PF00043 Glutathione S-transferase, C-terminal domain APT56_14555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14555 PF03466 LysR substrate binding domain APT56_14560 PF03401 Tripartite tricarboxylate transporter family receptor APT56_14565 PF07969 Amidohydrolase family APT56_14570 PF01177 Asp/Glu/Hydantoin racemase APT56_14580 PF00005 ABC transporter APT56_14585 PF00005 ABC transporter APT56_14585 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_14590 PF11862 Domain of unknown function (DUF3382) APT56_14590 PF02653 Branched-chain amino acid transport system / permease component APT56_14595 PF02653 Branched-chain amino acid transport system / permease component APT56_14600 PF13458 Periplasmic binding protein APT56_14605 PF02592 Putative vitamin uptake transporter APT56_14610 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT56_14610 PF03807 NADP oxidoreductase coenzyme F420-dependent APT56_14615 PF13416 Bacterial extracellular solute-binding protein APT56_14620 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14625 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14630 PF17912 MalK OB fold domain APT56_14630 PF00005 ABC transporter APT56_14645 PF00512 His Kinase A (phospho-acceptor) domain APT56_14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_14645 PF00672 HAMP domain APT56_14650 PF00072 Response regulator receiver domain APT56_14650 PF00486 Transcriptional regulatory protein, C terminal APT56_14655 PF13458 Periplasmic binding protein APT56_14665 PF00544 Pectate lyase APT56_14690 PF02563 Polysaccharide biosynthesis/export protein APT56_14695 PF00534 Glycosyl transferases group 1 APT56_14705 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT56_14705 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT56_14705 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT56_14710 PF00210 Ferritin-like domain APT56_14715 PF03466 LysR substrate binding domain APT56_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14720 PF00270 DEAD/DEAH box helicase APT56_14720 PF00271 Helicase conserved C-terminal domain APT56_14720 PF17191 RecG wedge domain APT56_14725 PF01042 Endoribonuclease L-PSP APT56_14740 PF03466 LysR substrate binding domain APT56_14740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14755 PF03401 Tripartite tricarboxylate transporter family receptor APT56_14760 PF00970 Oxidoreductase FAD-binding domain APT56_14760 PF00175 Oxidoreductase NAD-binding domain APT56_14765 PF13416 Bacterial extracellular solute-binding protein APT56_14770 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14775 PF08402 TOBE domain APT56_14775 PF00005 ABC transporter APT56_14780 PF03401 Tripartite tricarboxylate transporter family receptor APT56_14790 PF00472 RF-1 domain APT56_14795 PF02678 Pirin APT56_14795 PF05726 Pirin C-terminal cupin domain APT56_14800 PF17954 Quercetinase C-terminal cupin domain APT56_14800 PF02678 Pirin APT56_14805 PF03466 LysR substrate binding domain APT56_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14810 PF00158 Sigma-54 interaction domain APT56_14810 PF02954 Bacterial regulatory protein, Fis family APT56_14810 PF00072 Response regulator receiver domain APT56_14815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_14815 PF00512 His Kinase A (phospho-acceptor) domain APT56_14815 PF00989 PAS fold APT56_14825 PF06969 HemN C-terminal domain APT56_14825 PF04055 Radical SAM superfamily APT56_14830 PF01725 Ham1 family APT56_14835 PF00563 EAL domain APT56_14835 PF03707 Bacterial signalling protein N terminal repeat APT56_14835 PF00990 Diguanylate cyclase, GGDEF domain APT56_14855 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_14855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_14855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_14865 PF03725 3' exoribonuclease family, domain 2 APT56_14865 PF01138 3' exoribonuclease family, domain 1 APT56_14870 PF08340 Domain of unknown function (DUF1732) APT56_14870 PF03755 YicC-like family, N-terminal region APT56_14875 PF00324 Amino acid permease APT56_14880 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus APT56_14880 PF01048 Phosphorylase superfamily APT56_14890 PF07715 TonB-dependent Receptor Plug Domain APT56_14890 PF00593 TonB dependent receptor APT56_14895 PF00877 NlpC/P60 family APT56_14900 PF13332 Hemagglutinin repeat APT56_14900 PF05860 haemagglutination activity domain APT56_14900 PF05594 Haemagluttinin repeat APT56_14900 PF13018 Extended Signal Peptide of Type V secretion system APT56_14900 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain APT56_14910 PF00034 Cytochrome c APT56_14915 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_14920 PF00625 Guanylate kinase APT56_14925 PF01192 RNA polymerase Rpb6 APT56_14930 PF13291 ACT domain APT56_14930 PF04607 Region found in RelA / SpoT proteins APT56_14930 PF02824 TGS domain APT56_14935 PF00005 ABC transporter APT56_14940 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14945 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_14955 PF01968 Hydantoinase/oxoprolinase APT56_14955 PF05378 Hydantoinase/oxoprolinase N-terminal region APT56_14965 PF09297 NADH pyrophosphatase zinc ribbon domain APT56_14965 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain APT56_14965 PF00293 NUDIX domain APT56_14980 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_14985 PF13609 Gram-negative porin APT56_14990 PF00005 ABC transporter APT56_14995 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_14995 PF00005 ABC transporter APT56_15005 PF02653 Branched-chain amino acid transport system / permease component APT56_15015 PF07286 Protein of unknown function (DUF1445) APT56_15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15020 PF03466 LysR substrate binding domain APT56_15025 PF01425 Amidase APT56_15035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_15050 PF03466 LysR substrate binding domain APT56_15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15060 PF07055 Enoyl reductase FAD binding domain APT56_15060 PF12241 Trans-2-enoyl-CoA reductase catalytic region APT56_15060 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase APT56_15070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15070 PF03466 LysR substrate binding domain APT56_15075 PF00005 ABC transporter APT56_15075 PF08402 TOBE domain APT56_15080 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15090 PF00005 ABC transporter APT56_15095 PF13472 GDSL-like Lipase/Acylhydrolase family APT56_15100 PF13145 PPIC-type PPIASE domain APT56_15105 PF01546 Peptidase family M20/M25/M40 APT56_15105 PF07687 Peptidase dimerisation domain APT56_15110 PF03009 Glycerophosphoryl diester phosphodiesterase family APT56_15115 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APT56_15120 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_15120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_15125 PF08534 Redoxin APT56_15125 PF00462 Glutaredoxin APT56_15135 PF00403 Heavy-metal-associated domain APT56_15140 PF09278 MerR, DNA binding APT56_15140 PF00376 MerR family regulatory protein APT56_15145 PF05958 tRNA (Uracil-5-)-methyltransferase APT56_15165 PF01476 LysM domain APT56_15165 PF01551 Peptidase family M23 APT56_15175 PF01975 Survival protein SurE APT56_15180 PF02660 Glycerol-3-phosphate acyltransferase APT56_15185 PF00814 Glycoprotease family APT56_15190 PF00860 Permease family APT56_15200 PF00296 Luciferase-like monooxygenase APT56_15205 PF00085 Thioredoxin APT56_15210 PF01205 Uncharacterized protein family UPF0029 APT56_15230 PF00005 ABC transporter APT56_15235 PF07690 Major Facilitator Superfamily APT56_15240 PF12848 ABC transporter APT56_15240 PF00005 ABC transporter APT56_15245 PF17676 LD-carboxypeptidase C-terminal domain APT56_15245 PF02016 LD-carboxypeptidase N-terminal domain APT56_15250 PF14437 MafB19-like deaminase APT56_15265 PF03334 Na+/H+ antiporter subunit APT56_15270 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) APT56_15275 PF01899 Na+/H+ ion antiporter subunit APT56_15280 PF00361 Proton-conducting membrane transporter APT56_15285 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT56_15290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT56_15290 PF13244 Domain of unknown function (DUF4040) APT56_15290 PF00361 Proton-conducting membrane transporter APT56_15290 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter APT56_15295 PF03401 Tripartite tricarboxylate transporter family receptor APT56_15315 PF12320 Type 5 capsule protein repressor C-terminal domain APT56_15315 PF00149 Calcineurin-like phosphoesterase APT56_15320 PF01266 FAD dependent oxidoreductase APT56_15325 PF01037 Lrp/AsnC ligand binding domain APT56_15355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_15355 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_15355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_15360 PF02082 Transcriptional regulator APT56_15365 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_15365 PF13192 Thioredoxin domain APT56_15390 PF13609 Gram-negative porin APT56_15400 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_15405 PF00072 Response regulator receiver domain APT56_15405 PF00486 Transcriptional regulatory protein, C terminal APT56_15425 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15430 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15435 PF08402 TOBE domain APT56_15435 PF00005 ABC transporter APT56_15440 PF17912 MalK OB fold domain APT56_15440 PF00005 ABC transporter APT56_15445 PF00455 DeoR C terminal sensor domain APT56_15445 PF08220 DeoR-like helix-turn-helix domain APT56_15450 PF01266 FAD dependent oxidoreductase APT56_15450 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APT56_15455 PF00072 Response regulator receiver domain APT56_15455 PF01966 HD domain APT56_15465 PF16884 N-terminal domain of oxidoreductase APT56_15465 PF00107 Zinc-binding dehydrogenase APT56_15480 PF00005 ABC transporter APT56_15490 PF02321 Outer membrane efflux protein APT56_15500 PF04073 Aminoacyl-tRNA editing domain APT56_15530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT56_15540 PF00472 RF-1 domain APT56_15550 PF01242 6-pyruvoyl tetrahydropterin synthase APT56_15560 PF04632 Fusaric acid resistance protein family APT56_15565 PF07869 Protein of unknown function (DUF1656) APT56_15570 PF00529 HlyD membrane-fusion protein of T1SS APT56_15570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_15575 PF02321 Outer membrane efflux protein APT56_15585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_15585 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_15585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_15590 PF03401 Tripartite tricarboxylate transporter family receptor APT56_15605 PF02230 Phospholipase/Carboxylesterase APT56_15610 PF00324 Amino acid permease APT56_15615 PF00672 HAMP domain APT56_15615 PF02743 Cache domain APT56_15615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_15630 PF02811 PHP domain APT56_15630 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT56_15630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT56_15630 PF14579 Helix-hairpin-helix motif APT56_15640 PF07739 TipAS antibiotic-recognition domain APT56_15640 PF13411 MerR HTH family regulatory protein APT56_15645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15645 PF03466 LysR substrate binding domain APT56_15650 PF00248 Aldo/keto reductase family APT56_15660 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT56_15660 PF14572 Phosphoribosyl synthetase-associated domain APT56_15665 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APT56_15680 PF00005 ABC transporter APT56_15685 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15690 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15695 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_15705 PF03737 Aldolase/RraA APT56_15715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_15715 PF00529 HlyD membrane-fusion protein of T1SS APT56_15725 PF01527 Transposase APT56_15730 PF00440 Bacterial regulatory proteins, tetR family APT56_15730 PF13305 Tetracyclin repressor-like, C-terminal domain APT56_15735 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_15735 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_15740 PF01292 Prokaryotic cytochrome b561 APT56_15770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_15770 PF02203 Tar ligand binding domain homologue APT56_15770 PF00672 HAMP domain APT56_15795 PF02627 Carboxymuconolactone decarboxylase family APT56_15805 PF07171 MlrC C-terminus APT56_15805 PF07364 Metallopeptidase family M81 APT56_15820 PF00005 ABC transporter APT56_15825 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_15825 PF00005 ABC transporter APT56_15830 PF02653 Branched-chain amino acid transport system / permease component APT56_15835 PF13458 Periplasmic binding protein APT56_15840 PF00795 Carbon-nitrogen hydrolase APT56_15845 PF06983 3-demethylubiquinone-9 3-methyltransferase APT56_15850 PF07690 Major Facilitator Superfamily APT56_15855 PF06772 Bacterial low temperature requirement A protein (LtrA) APT56_15860 PF01614 Bacterial transcriptional regulator APT56_15860 PF09339 IclR helix-turn-helix domain APT56_15865 PF05199 GMC oxidoreductase APT56_15865 PF00732 GMC oxidoreductase APT56_15870 PF07690 Major Facilitator Superfamily APT56_15870 PF00083 Sugar (and other) transporter APT56_15875 PF00248 Aldo/keto reductase family APT56_15885 PF03401 Tripartite tricarboxylate transporter family receptor APT56_15890 PF00440 Bacterial regulatory proteins, tetR family APT56_15910 PF04463 Protein of unknown function (DUF523) APT56_15935 PF01618 MotA/TolQ/ExbB proton channel family APT56_15940 PF05736 OprF membrane domain APT56_15940 PF00691 OmpA family APT56_15945 PF03795 YCII-related domain APT56_15950 PF03795 YCII-related domain APT56_15960 PF08281 Sigma-70, region 4 APT56_15960 PF04542 Sigma-70 region 2 APT56_15970 PF00892 EamA-like transporter family APT56_15980 PF13419 Haloacid dehalogenase-like hydrolase APT56_15990 PF03466 LysR substrate binding domain APT56_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16000 PF00583 Acetyltransferase (GNAT) family APT56_16010 PF00043 Glutathione S-transferase, C-terminal domain APT56_16010 PF02798 Glutathione S-transferase, N-terminal domain APT56_16020 PF01047 MarR family APT56_16025 PF10127 RNA repair pathway DNA polymerase beta family APT56_16040 PF00285 Citrate synthase, C-terminal domain APT56_16045 PF02515 CoA-transferase family III APT56_16075 PF00691 OmpA family APT56_16075 PF13488 Glycine zipper APT56_16085 PF03055 Retinal pigment epithelial membrane protein APT56_16105 PF04717 Type VI secretion system, phage-baseplate injector APT56_16110 PF00004 ATPase family associated with various cellular activities (AAA) APT56_16110 PF07724 AAA domain (Cdc48 subfamily) APT56_16110 PF17871 AAA lid domain APT56_16110 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_16230 PF04972 BON domain APT56_16230 PF00691 OmpA family APT56_16255 PF00557 Metallopeptidase family M24 APT56_16265 PF00043 Glutathione S-transferase, C-terminal domain APT56_16265 PF13417 Glutathione S-transferase, N-terminal domain APT56_16270 PF00080 Copper/zinc superoxide dismutase (SODC) APT56_16275 PF04286 Protein of unknown function (DUF445) APT56_16285 PF00113 Enolase, C-terminal TIM barrel domain APT56_16285 PF03952 Enolase, N-terminal domain APT56_16310 PF03466 LysR substrate binding domain APT56_16310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_16315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_16315 PF00378 Enoyl-CoA hydratase/isomerase APT56_16320 PF02803 Thiolase, C-terminal domain APT56_16320 PF00108 Thiolase, N-terminal domain APT56_16325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_16325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_16325 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_16335 PF13193 AMP-binding enzyme C-terminal domain APT56_16335 PF00501 AMP-binding enzyme APT56_16340 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16345 PF00291 Pyridoxal-phosphate dependent enzyme APT56_16360 PF03466 LysR substrate binding domain APT56_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16365 PF07690 Major Facilitator Superfamily APT56_16370 PF12802 MarR family APT56_16375 PF07690 Major Facilitator Superfamily APT56_16380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_16380 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT56_16380 PF00034 Cytochrome c APT56_16385 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_16385 PF01799 [2Fe-2S] binding domain APT56_16390 PF01494 FAD binding domain APT56_16395 PF00561 alpha/beta hydrolase fold APT56_16405 PF00857 Isochorismatase family APT56_16410 PF00034 Cytochrome c APT56_16410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_16410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT56_16425 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_16430 PF01037 Lrp/AsnC ligand binding domain APT56_16435 PF13609 Gram-negative porin APT56_16440 PF00005 ABC transporter APT56_16440 PF08402 TOBE domain APT56_16450 PF00528 Binding-protein-dependent transport system inner membrane component APT56_16455 PF00563 EAL domain APT56_16455 PF00360 Phytochrome region APT56_16455 PF00990 Diguanylate cyclase, GGDEF domain APT56_16455 PF01590 GAF domain APT56_16460 PF00072 Response regulator receiver domain APT56_16460 PF01339 CheB methylesterase APT56_16465 PF01584 CheW-like domain APT56_16465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_16465 PF01627 Hpt domain APT56_16465 PF00072 Response regulator receiver domain APT56_16475 PF01739 CheR methyltransferase, SAM binding domain APT56_16485 PF02743 Cache domain APT56_16485 PF00672 HAMP domain APT56_16485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_16490 PF01425 Amidase APT56_16500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16500 PF03466 LysR substrate binding domain APT56_16505 PF07690 Major Facilitator Superfamily APT56_16515 PF06733 DEAD_2 APT56_16515 PF13307 Helicase C-terminal domain APT56_16520 PF18081 Fanconi anemia-associated nuclease SAP domain APT56_16520 PF08774 VRR-NUC domain APT56_16530 PF00583 Acetyltransferase (GNAT) family APT56_16545 PF00034 Cytochrome c APT56_16545 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_16550 PF00732 GMC oxidoreductase APT56_16550 PF05199 GMC oxidoreductase APT56_16555 PF13618 Gluconate 2-dehydrogenase subunit 3 APT56_16565 PF07690 Major Facilitator Superfamily APT56_16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16570 PF03466 LysR substrate binding domain APT56_16585 PF07690 Major Facilitator Superfamily APT56_16590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16590 PF03466 LysR substrate binding domain APT56_16595 PF00376 MerR family regulatory protein APT56_16595 PF09278 MerR, DNA binding APT56_16630 PF00561 alpha/beta hydrolase fold APT56_16645 PF00106 short chain dehydrogenase APT56_16650 PF06719 AraC-type transcriptional regulator N-terminus APT56_16650 PF12833 Helix-turn-helix domain APT56_16670 PF00857 Isochorismatase family APT56_16675 PF03466 LysR substrate binding domain APT56_16675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16685 PF08240 Alcohol dehydrogenase GroES-like domain APT56_16685 PF00107 Zinc-binding dehydrogenase APT56_16715 PF02540 NAD synthase APT56_16715 PF00958 GMP synthase C terminal domain APT56_16715 PF00117 Glutamine amidotransferase class-I APT56_16720 PF00571 CBS domain APT56_16720 PF00478 IMP dehydrogenase / GMP reductase domain APT56_16745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16745 PF03466 LysR substrate binding domain APT56_16750 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_16755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16780 PF03466 LysR substrate binding domain APT56_16785 PF00291 Pyridoxal-phosphate dependent enzyme APT56_16790 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16795 PF01425 Amidase APT56_16810 PF02607 B12 binding domain APT56_16810 PF02310 B12 binding domain APT56_16810 PF13411 MerR HTH family regulatory protein APT56_16815 PF03466 LysR substrate binding domain APT56_16815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16820 PF13454 FAD-NAD(P)-binding APT56_16825 PF00528 Binding-protein-dependent transport system inner membrane component APT56_16830 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_16830 PF00528 Binding-protein-dependent transport system inner membrane component APT56_16835 PF00005 ABC transporter APT56_16835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_16840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_16840 PF00005 ABC transporter APT56_16845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_16860 PF03466 LysR substrate binding domain APT56_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16865 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16870 PF02615 Malate/L-lactate dehydrogenase APT56_16875 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16920 PF00593 TonB dependent receptor APT56_16920 PF07715 TonB-dependent Receptor Plug Domain APT56_16925 PF12852 Cupin APT56_16925 PF12833 Helix-turn-helix domain APT56_16960 PF02627 Carboxymuconolactone decarboxylase family APT56_16965 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16975 PF02515 CoA-transferase family III APT56_16980 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_16985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16985 PF03466 LysR substrate binding domain APT56_16995 PF07715 TonB-dependent Receptor Plug Domain APT56_16995 PF07660 Secretin and TonB N terminus short domain APT56_16995 PF00593 TonB dependent receptor APT56_17010 PF01070 FMN-dependent dehydrogenase APT56_17015 PF02515 CoA-transferase family III APT56_17020 PF00378 Enoyl-CoA hydratase/isomerase APT56_17025 PF02515 CoA-transferase family III APT56_17030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_17030 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_17030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_17035 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17040 PF03466 LysR substrate binding domain APT56_17045 PF04909 Amidohydrolase APT56_17060 PF01613 Flavin reductase like domain APT56_17065 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17070 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17090 PF00593 TonB dependent receptor APT56_17090 PF07715 TonB-dependent Receptor Plug Domain APT56_17100 PF00990 Diguanylate cyclase, GGDEF domain APT56_17100 PF00563 EAL domain APT56_17105 PF07715 TonB-dependent Receptor Plug Domain APT56_17105 PF00593 TonB dependent receptor APT56_17150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT56_17160 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT56_17175 PF00440 Bacterial regulatory proteins, tetR family APT56_17185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_17185 PF01627 Hpt domain APT56_17185 PF00072 Response regulator receiver domain APT56_17185 PF00512 His Kinase A (phospho-acceptor) domain APT56_17185 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_17190 PF00072 Response regulator receiver domain APT56_17215 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17225 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APT56_17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17240 PF03466 LysR substrate binding domain APT56_17250 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_17260 PF00512 His Kinase A (phospho-acceptor) domain APT56_17260 PF08521 Two-component sensor kinase N-terminal APT56_17265 PF00072 Response regulator receiver domain APT56_17265 PF00486 Transcriptional regulatory protein, C terminal APT56_17280 PF02203 Tar ligand binding domain homologue APT56_17280 PF00672 HAMP domain APT56_17280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_17285 PF02769 AIR synthase related protein, C-terminal domain APT56_17285 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APT56_17285 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APT56_17295 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_17300 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_17305 PF01272 Transcription elongation factor, GreA/GreB, C-term APT56_17305 PF03449 Transcription elongation factor, N-terminal APT56_17310 PF02811 PHP domain APT56_17315 PF12697 Alpha/beta hydrolase family APT56_17335 PF00732 GMC oxidoreductase APT56_17335 PF05199 GMC oxidoreductase APT56_17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17340 PF03466 LysR substrate binding domain APT56_17350 PF03466 LysR substrate binding domain APT56_17350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17355 PF07690 Major Facilitator Superfamily APT56_17355 PF00083 Sugar (and other) transporter APT56_17360 PF07687 Peptidase dimerisation domain APT56_17360 PF01546 Peptidase family M20/M25/M40 APT56_17365 PF00753 Metallo-beta-lactamase superfamily APT56_17365 PF03772 Competence protein APT56_17370 PF00290 Tryptophan synthase alpha chain APT56_17375 PF00291 Pyridoxal-phosphate dependent enzyme APT56_17380 PF03466 LysR substrate binding domain APT56_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17385 PF00669 Bacterial flagellin N-terminal helical region APT56_17385 PF00700 Bacterial flagellin C-terminal helical region APT56_17385 PF08884 Flagellin D3 domain APT56_17390 PF00669 Bacterial flagellin N-terminal helical region APT56_17390 PF00700 Bacterial flagellin C-terminal helical region APT56_17395 PF01381 Helix-turn-helix APT56_17420 PF02525 Flavodoxin-like fold APT56_17430 PF00166 Chaperonin 10 Kd subunit APT56_17435 PF00118 TCP-1/cpn60 chaperonin family APT56_17445 PF00011 Hsp20/alpha crystallin family APT56_17460 PF00106 short chain dehydrogenase APT56_17470 PF00005 ABC transporter APT56_17490 PF02110 Hydroxyethylthiazole kinase family APT56_17495 PF07715 TonB-dependent Receptor Plug Domain APT56_17495 PF00593 TonB dependent receptor APT56_17500 PF00005 ABC transporter APT56_17505 PF01032 FecCD transport family APT56_17510 PF01032 FecCD transport family APT56_17515 PF01497 Periplasmic binding protein APT56_17520 PF07715 TonB-dependent Receptor Plug Domain APT56_17520 PF00593 TonB dependent receptor APT56_17525 PF00072 Response regulator receiver domain APT56_17525 PF00486 Transcriptional regulatory protein, C terminal APT56_17530 PF00672 HAMP domain APT56_17530 PF16750 Sensor domain of 2-component histidine kinase APT56_17530 PF00512 His Kinase A (phospho-acceptor) domain APT56_17530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_17535 PF01026 TatD related DNase APT56_17540 PF00005 ABC transporter APT56_17545 PF02687 FtsX-like permease family APT56_17545 PF12704 MacB-like periplasmic core domain APT56_17555 PF01368 DHH family APT56_17555 PF02272 DHHA1 domain APT56_17555 PF17768 RecJ OB domain APT56_17560 PF03797 Autotransporter beta-domain APT56_17560 PF13018 Extended Signal Peptide of Type V secretion system APT56_17560 PF16168 Adhesin of bacterial autotransporter system, probable stalk APT56_17565 PF07690 Major Facilitator Superfamily APT56_17570 PF03462 PCRF domain APT56_17570 PF00472 RF-1 domain APT56_17575 PF00106 short chain dehydrogenase APT56_17580 PF00152 tRNA synthetases class II (D, K and N) APT56_17580 PF01336 OB-fold nucleic acid binding domain APT56_17590 PF00392 Bacterial regulatory proteins, gntR family APT56_17590 PF00155 Aminotransferase class I and II APT56_17595 PF03594 Benzoate membrane transport protein APT56_17600 PF01168 Alanine racemase, N-terminal domain APT56_17605 PF00440 Bacterial regulatory proteins, tetR family APT56_17605 PF17932 Tetracyclin repressor-like, C-terminal domain APT56_17610 PF00108 Thiolase, N-terminal domain APT56_17610 PF02803 Thiolase, C-terminal domain APT56_17615 PF00501 AMP-binding enzyme APT56_17620 PF00005 ABC transporter APT56_17640 PF00005 ABC transporter APT56_17640 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_17645 PF00378 Enoyl-CoA hydratase/isomerase APT56_17655 PF02142 MGS-like domain APT56_17660 PF04384 Iron-sulphur cluster assembly APT56_17665 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_17670 PF00012 Hsp70 protein APT56_17675 PF07743 HSCB C-terminal oligomerisation domain APT56_17680 PF01521 Iron-sulphur cluster biosynthesis APT56_17685 PF01592 NifU-like N terminal domain APT56_17690 PF00266 Aminotransferase class-V APT56_17695 PF02082 Transcriptional regulator APT56_17700 PF01451 Low molecular weight phosphotyrosine protein phosphatase APT56_17705 PF00271 Helicase conserved C-terminal domain APT56_17705 PF04851 Type III restriction enzyme, res subunit APT56_17705 PF12344 Ultra-violet resistance protein B APT56_17705 PF17757 UvrB interaction domain APT56_17705 PF02151 UvrB/uvrC motif APT56_17710 PF00155 Aminotransferase class I and II APT56_17715 PF00717 Peptidase S24-like APT56_17715 PF01726 LexA DNA binding domain APT56_17720 PF00004 ATPase family associated with various cellular activities (AAA) APT56_17720 PF02190 ATP-dependent protease La (LON) substrate-binding domain APT56_17720 PF05362 Lon protease (S16) C-terminal proteolytic domain APT56_17725 PF06689 ClpX C4-type zinc finger APT56_17725 PF07724 AAA domain (Cdc48 subfamily) APT56_17725 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_17730 PF00574 Clp protease APT56_17735 PF05698 Bacterial trigger factor protein (TF) C-terminus APT56_17735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT56_17735 PF05697 Bacterial trigger factor protein (TF) APT56_17740 PF01435 Peptidase family M48 APT56_17745 PF03350 Uncharacterized protein family, UPF0114 APT56_17750 PF00313 'Cold-shock' DNA-binding domain APT56_17760 PF00313 'Cold-shock' DNA-binding domain APT56_17785 PF01042 Endoribonuclease L-PSP APT56_17790 PF14031 Putative serine dehydratase domain APT56_17790 PF01168 Alanine racemase, N-terminal domain APT56_17795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17795 PF03466 LysR substrate binding domain APT56_17810 PF00440 Bacterial regulatory proteins, tetR family APT56_17810 PF08361 MAATS-type transcriptional repressor, C-terminal region APT56_17835 PF00793 DAHP synthetase I family APT56_17850 PF00230 Major intrinsic protein APT56_17860 PF01565 FAD binding domain APT56_17860 PF02913 FAD linked oxidases, C-terminal domain APT56_17865 PF01266 FAD dependent oxidoreductase APT56_17865 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APT56_17870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT56_17870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT56_17875 PF07690 Major Facilitator Superfamily APT56_17905 PF00155 Aminotransferase class I and II APT56_17910 PF14602 Hexapeptide repeat of succinyl-transferase APT56_17910 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_17910 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APT56_17915 PF01546 Peptidase family M20/M25/M40 APT56_17915 PF07687 Peptidase dimerisation domain APT56_17920 PF05175 Methyltransferase small domain APT56_17925 PF12848 ABC transporter APT56_17925 PF00005 ABC transporter APT56_17940 PF07715 TonB-dependent Receptor Plug Domain APT56_17945 PF07715 TonB-dependent Receptor Plug Domain APT56_17950 PF03150 Di-haem cytochrome c peroxidase APT56_17960 PF13361 UvrD-like helicase C-terminal domain APT56_17960 PF00580 UvrD/REP helicase N-terminal domain APT56_17965 PF13542 Helix-turn-helix domain of transposase family ISL3 APT56_17965 PF01610 Transposase APT56_17965 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 APT56_17975 PF01189 16S rRNA methyltransferase RsmB/F APT56_17975 PF01029 NusB family APT56_17980 PF00551 Formyl transferase APT56_17985 PF06574 FAD synthetase APT56_17985 PF01687 Riboflavin kinase APT56_17990 PF06827 Zinc finger found in FPG and IleRS APT56_17990 PF08264 Anticodon-binding domain of tRNA APT56_17990 PF00133 tRNA synthetases class I (I, L, M and V) APT56_17995 PF01252 Signal peptidase (SPase) II APT56_18000 PF04127 DNA / pantothenate metabolism flavoprotein APT56_18000 PF02441 Flavoprotein APT56_18005 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18020 PF03575 Peptidase family S51 APT56_18050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT56_18055 PF00005 ABC transporter APT56_18060 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18065 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18070 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_18080 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT56_18085 PF02566 OsmC-like protein APT56_18090 PF01566 Natural resistance-associated macrophage protein APT56_18095 PF02321 Outer membrane efflux protein APT56_18100 PF00529 HlyD membrane-fusion protein of T1SS APT56_18100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_18115 PF03466 LysR substrate binding domain APT56_18115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18130 PF07690 Major Facilitator Superfamily APT56_18140 PF00005 ABC transporter APT56_18145 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_18145 PF00005 ABC transporter APT56_18150 PF02653 Branched-chain amino acid transport system / permease component APT56_18150 PF11862 Domain of unknown function (DUF3382) APT56_18155 PF02653 Branched-chain amino acid transport system / permease component APT56_18160 PF13458 Periplasmic binding protein APT56_18165 PF00171 Aldehyde dehydrogenase family APT56_18165 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APT56_18165 PF01619 Proline dehydrogenase APT56_18165 PF14850 DNA-binding domain of Proline dehydrogenase APT56_18175 PF02470 MlaD protein APT56_18180 PF04403 Paraquat-inducible protein A APT56_18185 PF02861 Clp amino terminal domain, pathogenicity island component APT56_18185 PF17871 AAA lid domain APT56_18185 PF07724 AAA domain (Cdc48 subfamily) APT56_18185 PF00004 ATPase family associated with various cellular activities (AAA) APT56_18185 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_18190 PF06832 Penicillin-Binding Protein C-terminus Family APT56_18190 PF00912 Transglycosylase APT56_18190 PF00905 Penicillin binding protein transpeptidase domain APT56_18195 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain APT56_18195 PF00207 Alpha-2-macroglobulin family APT56_18195 PF11974 Bacterial alpha-2-macroglobulin MG3 domain APT56_18195 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain APT56_18195 PF17962 Bacterial macroglobulin domain 6 APT56_18195 PF01835 MG2 domain APT56_18195 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain APT56_18195 PF07703 Alpha-2-macroglobulin bait region domain APT56_18200 PF02617 ATP-dependent Clp protease adaptor protein ClpS APT56_18205 PF00313 'Cold-shock' DNA-binding domain APT56_18215 PF00108 Thiolase, N-terminal domain APT56_18215 PF02803 Thiolase, C-terminal domain APT56_18220 PF00654 Voltage gated chloride channel APT56_18225 PF00672 HAMP domain APT56_18225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_18225 PF02203 Tar ligand binding domain homologue APT56_18230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT56_18230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT56_18240 PF02601 Exonuclease VII, large subunit APT56_18240 PF13742 OB-fold nucleic acid binding domain APT56_18245 PF01618 MotA/TolQ/ExbB proton channel family APT56_18255 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APT56_18260 PF07095 Intracellular growth attenuator protein IgaA APT56_18265 PF03966 Trm112p-like protein APT56_18270 PF02348 Cytidylyltransferase APT56_18275 PF05191 Adenylate kinase, active site lid APT56_18280 PF00106 short chain dehydrogenase APT56_18285 PF03023 Lipid II flippase MurJ APT56_18295 PF01649 Ribosomal protein S20 APT56_18300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18300 PF03466 LysR substrate binding domain APT56_18305 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT56_18305 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT56_18310 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_18315 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18320 PF02615 Malate/L-lactate dehydrogenase APT56_18325 PF07729 FCD domain APT56_18325 PF00392 Bacterial regulatory proteins, gntR family APT56_18335 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_18345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_18360 PF18073 Rubredoxin metal binding domain APT56_18375 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APT56_18380 PF00171 Aldehyde dehydrogenase family APT56_18385 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_18390 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_18395 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_18400 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_18410 PF00842 Alanine racemase, C-terminal domain APT56_18410 PF01168 Alanine racemase, N-terminal domain APT56_18430 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APT56_18445 PF07969 Amidohydrolase family APT56_18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18450 PF03466 LysR substrate binding domain APT56_18460 PF09370 Phosphoenolpyruvate hydrolase-like APT56_18490 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_18490 PF17871 AAA lid domain APT56_18490 PF07724 AAA domain (Cdc48 subfamily) APT56_18490 PF00004 ATPase family associated with various cellular activities (AAA) APT56_18490 PF02861 Clp amino terminal domain, pathogenicity island component APT56_18500 PF00027 Cyclic nucleotide-binding domain APT56_18500 PF13545 Crp-like helix-turn-helix domain APT56_18510 PF00083 Sugar (and other) transporter APT56_18515 PF02627 Carboxymuconolactone decarboxylase family APT56_18525 PF00293 NUDIX domain APT56_18530 PF00012 Hsp70 protein APT56_18545 PF07715 TonB-dependent Receptor Plug Domain APT56_18545 PF00593 TonB dependent receptor APT56_18550 PF00593 TonB dependent receptor APT56_18550 PF07715 TonB-dependent Receptor Plug Domain APT56_18560 PF01965 DJ-1/PfpI family APT56_18565 PF07690 Major Facilitator Superfamily APT56_18575 PF12843 Putative quorum-sensing-regulated virulence factor APT56_18590 PF13417 Glutathione S-transferase, N-terminal domain APT56_18590 PF00043 Glutathione S-transferase, C-terminal domain APT56_18610 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18615 PF04909 Amidohydrolase APT56_18620 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18625 PF03737 Aldolase/RraA APT56_18630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_18630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_18640 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18645 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18650 PF08450 SMP-30/Gluconolactonase/LRE-like region APT56_18670 PF03069 Acetamidase/Formamidase family APT56_18690 PF01037 Lrp/AsnC ligand binding domain APT56_18690 PF13404 AsnC-type helix-turn-helix domain APT56_18700 PF00005 ABC transporter APT56_18700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_18705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_18710 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18725 PF00117 Glutamine amidotransferase class-I APT56_18725 PF13673 Acetyltransferase (GNAT) domain APT56_18725 PF13302 Acetyltransferase (GNAT) domain APT56_18725 PF03352 Methyladenine glycosylase APT56_18725 PF00958 GMP synthase C terminal domain APT56_18745 PF13302 Acetyltransferase (GNAT) domain APT56_18745 PF00958 GMP synthase C terminal domain APT56_18745 PF00117 Glutamine amidotransferase class-I APT56_18745 PF03352 Methyladenine glycosylase APT56_18745 PF13673 Acetyltransferase (GNAT) domain APT56_18755 PF13406 Transglycosylase SLT domain APT56_18765 PF03466 LysR substrate binding domain APT56_18765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18770 PF00962 Adenosine/AMP deaminase APT56_18775 PF00135 Carboxylesterase family APT56_18780 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18785 PF00440 Bacterial regulatory proteins, tetR family APT56_18785 PF17754 MftR C-terminal domain APT56_18790 PF07690 Major Facilitator Superfamily APT56_18795 PF07687 Peptidase dimerisation domain APT56_18795 PF01546 Peptidase family M20/M25/M40 APT56_18800 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18810 PF00583 Acetyltransferase (GNAT) family APT56_18815 PF03447 Homoserine dehydrogenase, NAD binding domain APT56_18815 PF01958 Domain of unknown function DUF108 APT56_18820 PF00005 ABC transporter APT56_18820 PF06472 ABC transporter transmembrane region 2 APT56_18830 PF04909 Amidohydrolase APT56_18835 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18840 PF00990 Diguanylate cyclase, GGDEF domain APT56_18840 PF00563 EAL domain APT56_18840 PF03707 Bacterial signalling protein N terminal repeat APT56_18845 PF01479 S4 domain APT56_18850 PF03976 Polyphosphate kinase 2 (PPK2) APT56_18865 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_18870 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18875 PF00005 ABC transporter APT56_18875 PF09383 NIL domain APT56_18880 PF03180 NLPA lipoprotein APT56_18890 PF00144 Beta-lactamase APT56_18895 PF01266 FAD dependent oxidoreductase APT56_18905 PF02567 Phenazine biosynthesis-like protein APT56_18910 PF00392 Bacterial regulatory proteins, gntR family APT56_18910 PF00155 Aminotransferase class I and II APT56_18915 PF00175 Oxidoreductase NAD-binding domain APT56_18915 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_18915 PF00970 Oxidoreductase FAD-binding domain APT56_18925 PF04261 Dyp-type peroxidase family APT56_18930 PF12697 Alpha/beta hydrolase family APT56_18945 PF12833 Helix-turn-helix domain APT56_18945 PF02805 Metal binding domain of Ada APT56_18955 PF18029 Glyoxalase-like domain APT56_18965 PF10503 Esterase PHB depolymerase APT56_18975 PF03006 Haemolysin-III related APT56_19000 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_19000 PF00355 Rieske [2Fe-2S] domain APT56_19015 PF14765 Polyketide synthase dehydratase APT56_19015 PF00698 Acyl transferase domain APT56_19015 PF16197 Ketoacyl-synthetase C-terminal extension APT56_19015 PF08240 Alcohol dehydrogenase GroES-like domain APT56_19015 PF00550 Phosphopantetheine attachment site APT56_19015 PF08659 KR domain APT56_19015 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_19015 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_19025 PF00501 AMP-binding enzyme APT56_19025 PF13193 AMP-binding enzyme C-terminal domain APT56_19030 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_19040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_19045 PF00072 Response regulator receiver domain APT56_19045 PF00196 Bacterial regulatory proteins, luxR family APT56_19055 PF02803 Thiolase, C-terminal domain APT56_19055 PF00108 Thiolase, N-terminal domain APT56_19065 PF13417 Glutathione S-transferase, N-terminal domain APT56_19070 PF01061 ABC-2 type transporter APT56_19075 PF00005 ABC transporter APT56_19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_19080 PF05231 MASE1 APT56_19080 PF07730 Histidine kinase APT56_19085 PF00072 Response regulator receiver domain APT56_19085 PF00196 Bacterial regulatory proteins, luxR family APT56_19090 PF00005 ABC transporter APT56_19095 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19100 PF00005 ABC transporter APT56_19105 PF02560 Cyanate lyase C-terminal domain APT56_19110 PF08543 Phosphomethylpyrimidine kinase APT56_19150 PF02472 Biopolymer transport protein ExbD/TolR APT56_19155 PF01618 MotA/TolQ/ExbB proton channel family APT56_19215 PF01381 Helix-turn-helix APT56_19215 PF08671 Anti-repressor SinI APT56_19220 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_19230 PF03401 Tripartite tricarboxylate transporter family receptor APT56_19235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_19235 PF00005 ABC transporter APT56_19240 PF05378 Hydantoinase/oxoprolinase N-terminal region APT56_19240 PF01968 Hydantoinase/oxoprolinase APT56_19250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_19255 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19260 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_19260 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19270 PF01380 SIS domain APT56_19270 PF01418 Helix-turn-helix domain, rpiR family APT56_19270 PF02685 Glucokinase APT56_19275 PF08546 Ketopantoate reductase PanE/ApbA C terminal APT56_19275 PF02558 Ketopantoate reductase PanE/ApbA APT56_19280 PF01965 DJ-1/PfpI family APT56_19290 PF03466 LysR substrate binding domain APT56_19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_19295 PF07690 Major Facilitator Superfamily APT56_19300 PF07694 5TMR of 5TMR-LYT APT56_19300 PF00990 Diguanylate cyclase, GGDEF domain APT56_19305 PF03797 Autotransporter beta-domain APT56_19315 PF05401 Nodulation protein S (NodS) APT56_19330 PF00356 Bacterial regulatory proteins, lacI family APT56_19335 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_19340 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_19350 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain APT56_19350 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain APT56_19355 PF07005 Sugar-binding N-terminal domain APT56_19355 PF17042 Nucleotide-binding C-terminal domain APT56_19360 PF13478 XdhC Rossmann domain APT56_19360 PF02625 XdhC and CoxI family APT56_19365 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT56_19370 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_19370 PF01799 [2Fe-2S] binding domain APT56_19375 PF00107 Zinc-binding dehydrogenase APT56_19375 PF08240 Alcohol dehydrogenase GroES-like domain APT56_19380 PF12833 Helix-turn-helix domain APT56_19380 PF06719 AraC-type transcriptional regulator N-terminus APT56_19395 PF00324 Amino acid permease APT56_19400 PF01068 ATP dependent DNA ligase domain APT56_19400 PF04679 ATP dependent DNA ligase C terminal region APT56_19400 PF13298 DNA polymerase Ligase (LigD) APT56_19405 PF02735 Ku70/Ku80 beta-barrel domain APT56_19410 PF00994 Probable molybdopterin binding domain APT56_19410 PF18146 Damage-inducible protein CinA KH domain APT56_19410 PF02464 Competence-damaged protein APT56_19415 PF02954 Bacterial regulatory protein, Fis family APT56_19415 PF00072 Response regulator receiver domain APT56_19415 PF00158 Sigma-54 interaction domain APT56_19420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_19420 PF00989 PAS fold APT56_19420 PF00512 His Kinase A (phospho-acceptor) domain APT56_19430 PF01970 Tripartite tricarboxylate transporter TctA family APT56_19445 PF07687 Peptidase dimerisation domain APT56_19445 PF01546 Peptidase family M20/M25/M40 APT56_19455 PF00202 Aminotransferase class-III APT56_19460 PF00155 Aminotransferase class I and II APT56_19460 PF00392 Bacterial regulatory proteins, gntR family APT56_19465 PF00083 Sugar (and other) transporter APT56_19465 PF07690 Major Facilitator Superfamily APT56_19470 PF08281 Sigma-70, region 4 APT56_19470 PF04542 Sigma-70 region 2 APT56_19480 PF07715 TonB-dependent Receptor Plug Domain APT56_19480 PF00593 TonB dependent receptor APT56_19485 PF07715 TonB-dependent Receptor Plug Domain APT56_19485 PF00593 TonB dependent receptor APT56_19490 PF00593 TonB dependent receptor APT56_19490 PF07715 TonB-dependent Receptor Plug Domain APT56_19520 PF13545 Crp-like helix-turn-helix domain APT56_19520 PF00027 Cyclic nucleotide-binding domain APT56_19530 PF00196 Bacterial regulatory proteins, luxR family APT56_19540 PF00561 alpha/beta hydrolase fold APT56_19555 PF09339 IclR helix-turn-helix domain APT56_19555 PF01614 Bacterial transcriptional regulator APT56_19560 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_19575 PF08666 SAF domain APT56_19575 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus APT56_19580 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19585 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19590 PF00005 ABC transporter APT56_19600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_19600 PF13378 Enolase C-terminal domain-like APT56_19605 PF00732 GMC oxidoreductase APT56_19605 PF05199 GMC oxidoreductase APT56_19610 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APT56_19610 PF01488 Shikimate / quinate 5-dehydrogenase APT56_19610 PF08501 Shikimate dehydrogenase substrate binding domain APT56_19615 PF02780 Transketolase, C-terminal domain APT56_19615 PF02779 Transketolase, pyrimidine binding domain APT56_19620 PF00456 Transketolase, thiamine diphosphate binding domain APT56_19625 PF07729 FCD domain APT56_19625 PF00392 Bacterial regulatory proteins, gntR family APT56_19630 PF00465 Iron-containing alcohol dehydrogenase APT56_19635 PF05853 beta-keto acid cleavage enzyme APT56_19640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_19640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_19650 PF13458 Periplasmic binding protein APT56_19655 PF02653 Branched-chain amino acid transport system / permease component APT56_19660 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_19660 PF00005 ABC transporter APT56_19665 PF00005 ABC transporter APT56_19670 PF00698 Acyl transferase domain APT56_19670 PF16197 Ketoacyl-synthetase C-terminal extension APT56_19670 PF08240 Alcohol dehydrogenase GroES-like domain APT56_19670 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_19670 PF14765 Polyketide synthase dehydratase APT56_19670 PF00550 Phosphopantetheine attachment site APT56_19670 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_19670 PF08659 KR domain APT56_19680 PF07715 TonB-dependent Receptor Plug Domain APT56_19680 PF00593 TonB dependent receptor APT56_19690 PF03466 LysR substrate binding domain APT56_19690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_19695 PF00330 Aconitase family (aconitate hydratase) APT56_19695 PF00694 Aconitase C-terminal domain APT56_19700 PF01389 OmpA-like transmembrane domain APT56_19700 PF00691 OmpA family APT56_19705 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APT56_19720 PF08207 Elongation factor P (EF-P) KOW-like domain APT56_19720 PF09285 Elongation factor P, C-terminal APT56_19720 PF01132 Elongation factor P (EF-P) OB domain APT56_19735 PF02954 Bacterial regulatory protein, Fis family APT56_19735 PF00072 Response regulator receiver domain APT56_19735 PF00158 Sigma-54 interaction domain APT56_19765 PF00437 Type II/IV secretion system protein APT56_19775 PF04972 BON domain APT56_19775 PF13629 Pilus formation protein N terminal region APT56_19775 PF00263 Bacterial type II and III secretion system protein APT56_19805 PF00563 EAL domain APT56_19805 PF00990 Diguanylate cyclase, GGDEF domain APT56_19805 PF03707 Bacterial signalling protein N terminal repeat APT56_19810 PF08479 POTRA domain, ShlB-type APT56_19810 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_19820 PF01047 MarR family APT56_19825 PF00005 ABC transporter APT56_19825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_19830 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_19830 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19835 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19850 PF01544 CorA-like Mg2+ transporter protein APT56_19855 PF13361 UvrD-like helicase C-terminal domain APT56_19855 PF00580 UvrD/REP helicase N-terminal domain APT56_19865 PF00392 Bacterial regulatory proteins, gntR family APT56_19865 PF00155 Aminotransferase class I and II APT56_19870 PF00202 Aminotransferase class-III APT56_19875 PF00171 Aldehyde dehydrogenase family APT56_19880 PF00459 Inositol monophosphatase family APT56_19885 PF02146 Sir2 family APT56_19890 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_19895 PF16363 GDP-mannose 4,6 dehydratase APT56_19900 PF00342 Phosphoglucose isomerase APT56_19905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT56_19905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT56_19905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT56_19905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT56_19910 PF02706 Chain length determinant protein APT56_19910 PF13807 G-rich domain on putative tyrosine kinase APT56_19910 PF13614 AAA domain APT56_19915 PF10531 SLBB domain APT56_19915 PF02563 Polysaccharide biosynthesis/export protein APT56_19920 PF02397 Bacterial sugar transferase APT56_19925 PF00293 NUDIX domain APT56_19930 PF00483 Nucleotidyl transferase APT56_19930 PF01050 Mannose-6-phosphate isomerase APT56_19940 PF16363 GDP-mannose 4,6 dehydratase APT56_19945 PF01370 NAD dependent epimerase/dehydratase family APT56_19955 PF00535 Glycosyl transferase family 2 APT56_19965 PF13439 Glycosyltransferase Family 4 APT56_19965 PF00534 Glycosyl transferases group 1 APT56_19970 PF00535 Glycosyl transferase family 2 APT56_19975 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_19980 PF00534 Glycosyl transferases group 1 APT56_19980 PF13579 Glycosyl transferase 4-like domain APT56_19985 PF00196 Bacterial regulatory proteins, luxR family APT56_19985 PF00072 Response regulator receiver domain APT56_19990 PF00196 Bacterial regulatory proteins, luxR family APT56_19990 PF00072 Response regulator receiver domain APT56_20000 PF00440 Bacterial regulatory proteins, tetR family APT56_20000 PF08361 MAATS-type transcriptional repressor, C-terminal region APT56_20005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_20005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_20005 PF09317 Domain of unknown function (DUF1974) APT56_20010 PF00108 Thiolase, N-terminal domain APT56_20010 PF02803 Thiolase, C-terminal domain APT56_20015 PF00378 Enoyl-CoA hydratase/isomerase APT56_20015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_20015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_20025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_20025 PF00378 Enoyl-CoA hydratase/isomerase APT56_20025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_20030 PF00108 Thiolase, N-terminal domain APT56_20030 PF02803 Thiolase, C-terminal domain APT56_20045 PF13193 AMP-binding enzyme C-terminal domain APT56_20045 PF00501 AMP-binding enzyme APT56_20050 PF00884 Sulfatase APT56_20050 PF16347 Domain of unknown function (DUF4976) APT56_20055 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20065 PF00005 ABC transporter APT56_20065 PF00664 ABC transporter transmembrane region APT56_20070 PF03812 2-keto-3-deoxygluconate permease APT56_20075 PF17042 Nucleotide-binding C-terminal domain APT56_20075 PF07005 Sugar-binding N-terminal domain APT56_20080 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT56_20090 PF01144 Coenzyme A transferase APT56_20095 PF01144 Coenzyme A transferase APT56_20105 PF02515 CoA-transferase family III APT56_20110 PF01614 Bacterial transcriptional regulator APT56_20110 PF09339 IclR helix-turn-helix domain APT56_20115 PF05995 Cysteine dioxygenase type I APT56_20120 PF02146 Sir2 family APT56_20145 PF03466 LysR substrate binding domain APT56_20145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20155 PF00583 Acetyltransferase (GNAT) family APT56_20185 PF17932 Tetracyclin repressor-like, C-terminal domain APT56_20185 PF00440 Bacterial regulatory proteins, tetR family APT56_20190 PF04185 Phosphoesterase family APT56_20195 PF00581 Rhodanese-like domain APT56_20200 PF03797 Autotransporter beta-domain APT56_20205 PF00512 His Kinase A (phospho-acceptor) domain APT56_20205 PF09456 RcsC Alpha-Beta-Loop (ABL) APT56_20205 PF00072 Response regulator receiver domain APT56_20205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20210 PF00563 EAL domain APT56_20210 PF00990 Diguanylate cyclase, GGDEF domain APT56_20210 PF03707 Bacterial signalling protein N terminal repeat APT56_20215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20215 PF00072 Response regulator receiver domain APT56_20215 PF09456 RcsC Alpha-Beta-Loop (ABL) APT56_20215 PF00512 His Kinase A (phospho-acceptor) domain APT56_20235 PF13840 ACT domain APT56_20235 PF01842 ACT domain APT56_20235 PF00696 Amino acid kinase family APT56_20240 PF09179 TilS substrate binding domain APT56_20240 PF01171 PP-loop family APT56_20245 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APT56_20255 PF01406 tRNA synthetases class I (C) catalytic domain APT56_20255 PF09190 DALR domain APT56_20265 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT56_20270 PF00149 Calcineurin-like phosphoesterase APT56_20275 PF02673 Bacitracin resistance protein BacA APT56_20280 PF03471 Transporter associated domain APT56_20280 PF03741 Integral membrane protein TerC family APT56_20285 PF00459 Inositol monophosphatase family APT56_20290 PF00588 SpoU rRNA Methylase family APT56_20295 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20305 PF00924 Mechanosensitive ion channel APT56_20305 PF05552 Conserved TM helix APT56_20330 PF00083 Sugar (and other) transporter APT56_20345 PF09084 NMT1/THI5 like APT56_20350 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20355 PF00005 ABC transporter APT56_20365 PF01425 Amidase APT56_20370 PF00392 Bacterial regulatory proteins, gntR family APT56_20370 PF07729 FCD domain APT56_20385 PF03358 NADPH-dependent FMN reductase APT56_20390 PF07311 Dodecin APT56_20400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20400 PF03466 LysR substrate binding domain APT56_20405 PF00106 short chain dehydrogenase APT56_20410 PF00107 Zinc-binding dehydrogenase APT56_20410 PF08240 Alcohol dehydrogenase GroES-like domain APT56_20440 PF03466 LysR substrate binding domain APT56_20440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20460 PF01624 MutS domain I APT56_20460 PF05188 MutS domain II APT56_20460 PF05192 MutS domain III APT56_20460 PF05190 MutS family domain IV APT56_20460 PF00488 MutS domain V APT56_20465 PF08007 Cupin superfamily protein APT56_20475 PF06804 NlpB/DapX lipoprotein APT56_20480 PF00701 Dihydrodipicolinate synthetase family APT56_20485 PF02163 Peptidase family M50 APT56_20490 PF01300 Telomere recombination APT56_20495 PF04228 Putative neutral zinc metallopeptidase APT56_20550 PF01588 Putative tRNA binding domain APT56_20555 PF02659 Putative manganese efflux pump APT56_20560 PF11922 Domain of unknown function (DUF3440) APT56_20560 PF01507 Phosphoadenosine phosphosulfate reductase family APT56_20565 PF02195 ParB-like nuclease domain APT56_20570 PF00512 His Kinase A (phospho-acceptor) domain APT56_20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20570 PF08521 Two-component sensor kinase N-terminal APT56_20575 PF00072 Response regulator receiver domain APT56_20575 PF00486 Transcriptional regulatory protein, C terminal APT56_20580 PF01925 Sulfite exporter TauE/SafE APT56_20585 PF00419 Fimbrial protein APT56_20590 PF00577 Outer membrane usher protein APT56_20590 PF13954 PapC N-terminal domain APT56_20590 PF13953 PapC C-terminal domain APT56_20595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain APT56_20595 PF02753 Pili assembly chaperone PapD, C-terminal domain APT56_20610 PF00563 EAL domain APT56_20610 PF00990 Diguanylate cyclase, GGDEF domain APT56_20610 PF13188 PAS domain APT56_20610 PF03707 Bacterial signalling protein N terminal repeat APT56_20615 PF00072 Response regulator receiver domain APT56_20615 PF00512 His Kinase A (phospho-acceptor) domain APT56_20615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20615 PF09456 RcsC Alpha-Beta-Loop (ABL) APT56_20620 PF00072 Response regulator receiver domain APT56_20620 PF00196 Bacterial regulatory proteins, luxR family APT56_20650 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain APT56_20655 PF13954 PapC N-terminal domain APT56_20655 PF13953 PapC C-terminal domain APT56_20655 PF00577 Outer membrane usher protein APT56_20660 PF00657 GDSL-like Lipase/Acylhydrolase APT56_20660 PF03797 Autotransporter beta-domain APT56_20665 PF02203 Tar ligand binding domain homologue APT56_20665 PF00672 HAMP domain APT56_20665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_20670 PF00082 Subtilase family APT56_20670 PF03797 Autotransporter beta-domain APT56_20675 PF00795 Carbon-nitrogen hydrolase APT56_20695 PF00669 Bacterial flagellin N-terminal helical region APT56_20695 PF00700 Bacterial flagellin C-terminal helical region APT56_20695 PF08884 Flagellin D3 domain APT56_20700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_20700 PF00672 HAMP domain APT56_20700 PF02203 Tar ligand binding domain homologue APT56_20705 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20725 PF00529 HlyD membrane-fusion protein of T1SS APT56_20730 PF00664 ABC transporter transmembrane region APT56_20730 PF00005 ABC transporter APT56_20750 PF13091 PLD-like domain APT56_20750 PF13396 Phospholipase_D-nuclease N-terminal APT56_20760 PF02311 AraC-like ligand binding domain APT56_20760 PF12833 Helix-turn-helix domain APT56_20765 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_20770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_20770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_20780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20780 PF03466 LysR substrate binding domain APT56_20785 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20795 PF00795 Carbon-nitrogen hydrolase APT56_20810 PF00392 Bacterial regulatory proteins, gntR family APT56_20810 PF07729 FCD domain APT56_20815 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20825 PF00595 PDZ domain APT56_20835 PF17991 Thioredoxin like C-terminal domain APT56_20835 PF02683 Cytochrome C biogenesis protein transmembrane region APT56_20835 PF00578 AhpC/TSA family APT56_20840 PF02683 Cytochrome C biogenesis protein transmembrane region APT56_20840 PF00578 AhpC/TSA family APT56_20840 PF17991 Thioredoxin like C-terminal domain APT56_20845 PF00486 Transcriptional regulatory protein, C terminal APT56_20845 PF00072 Response regulator receiver domain APT56_20850 PF00672 HAMP domain APT56_20850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20850 PF00512 His Kinase A (phospho-acceptor) domain APT56_20850 PF16527 Two-component sensor protein CpxA, periplasmic domain APT56_20855 PF02566 OsmC-like protein APT56_20860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20860 PF03466 LysR substrate binding domain APT56_20865 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20870 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20870 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_20875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_20875 PF00005 ABC transporter APT56_20880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_20880 PF00005 ABC transporter APT56_20885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_20890 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APT56_20890 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APT56_20895 PF13609 Gram-negative porin APT56_20900 PF09335 SNARE associated Golgi protein APT56_20905 PF00155 Aminotransferase class I and II APT56_20905 PF00392 Bacterial regulatory proteins, gntR family APT56_20910 PF03466 LysR substrate binding domain APT56_20910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20920 PF07869 Protein of unknown function (DUF1656) APT56_20925 PF00529 HlyD membrane-fusion protein of T1SS APT56_20925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_20930 PF02321 Outer membrane efflux protein APT56_20945 PF00534 Glycosyl transferases group 1 APT56_20945 PF13439 Glycosyltransferase Family 4 APT56_20950 PF04229 GrpB protein APT56_20980 PF01266 FAD dependent oxidoreductase APT56_20985 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20990 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20995 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_21000 PF00005 ABC transporter APT56_21005 PF00171 Aldehyde dehydrogenase family APT56_21015 PF00701 Dihydrodipicolinate synthetase family APT56_21020 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_21020 PF13378 Enolase C-terminal domain-like APT56_21025 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT56_21030 PF03401 Tripartite tricarboxylate transporter family receptor APT56_21035 PF03466 LysR substrate binding domain APT56_21035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21050 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase APT56_21050 PF12801 4Fe-4S binding domain APT56_21050 PF13746 4Fe-4S dicluster domain APT56_21055 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP APT56_21055 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_21070 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT56_21085 PF00202 Aminotransferase class-III APT56_21090 PF00155 Aminotransferase class I and II APT56_21095 PF00561 alpha/beta hydrolase fold APT56_21100 PF13649 Methyltransferase domain APT56_21105 PF13649 Methyltransferase domain APT56_21120 PF10996 Beta-Casp domain APT56_21120 PF00753 Metallo-beta-lactamase superfamily APT56_21120 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APT56_21135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21135 PF03466 LysR substrate binding domain APT56_21140 PF00463 Isocitrate lyase family APT56_21145 PF14489 QueF-like protein APT56_21145 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APT56_21150 PF03150 Di-haem cytochrome c peroxidase APT56_21150 PF00034 Cytochrome c APT56_21155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21155 PF03466 LysR substrate binding domain APT56_21160 PF00180 Isocitrate/isopropylmalate dehydrogenase APT56_21170 PF01066 CDP-alcohol phosphatidyltransferase APT56_21175 PF08459 UvrC Helix-hairpin-helix N-terminal APT56_21175 PF02151 UvrB/uvrC motif APT56_21175 PF01541 GIY-YIG catalytic domain APT56_21180 PF00933 Glycosyl hydrolase family 3 N terminal domain APT56_21185 PF01648 4'-phosphopantetheinyl transferase superfamily APT56_21190 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APT56_21195 PF02321 Outer membrane efflux protein APT56_21200 PF00873 AcrB/AcrD/AcrF family APT56_21205 PF00529 HlyD membrane-fusion protein of T1SS APT56_21205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT56_21225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21225 PF03459 TOBE domain APT56_21230 PF00005 ABC transporter APT56_21230 PF03459 TOBE domain APT56_21235 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21245 PF02675 S-adenosylmethionine decarboxylase APT56_21275 PF01266 FAD dependent oxidoreductase APT56_21285 PF00005 ABC transporter APT56_21290 PF02653 Branched-chain amino acid transport system / permease component APT56_21300 PF00248 Aldo/keto reductase family APT56_21305 PF03401 Tripartite tricarboxylate transporter family receptor APT56_21310 PF13193 AMP-binding enzyme C-terminal domain APT56_21310 PF00501 AMP-binding enzyme APT56_21315 PF00378 Enoyl-CoA hydratase/isomerase APT56_21325 PF07729 FCD domain APT56_21325 PF00392 Bacterial regulatory proteins, gntR family APT56_21335 PF02803 Thiolase, C-terminal domain APT56_21335 PF00108 Thiolase, N-terminal domain APT56_21340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_21340 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_21340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_21345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_21345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_21345 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_21350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21350 PF03466 LysR substrate binding domain APT56_21355 PF02515 CoA-transferase family III APT56_21365 PF03401 Tripartite tricarboxylate transporter family receptor APT56_21370 PF04966 Carbohydrate-selective porin, OprB family APT56_21375 PF13407 Periplasmic binding protein domain APT56_21380 PF00005 ABC transporter APT56_21385 PF02653 Branched-chain amino acid transport system / permease component APT56_21390 PF10282 Lactonase, 7-bladed beta-propeller APT56_21395 PF01370 NAD dependent epimerase/dehydratase family APT56_21400 PF00356 Bacterial regulatory proteins, lacI family APT56_21405 PF01361 Tautomerase enzyme APT56_21410 PF00571 CBS domain APT56_21410 PF00005 ABC transporter APT56_21415 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21430 PF07690 Major Facilitator Superfamily APT56_21435 PF00830 Ribosomal L28 family APT56_21440 PF00471 Ribosomal protein L33 APT56_21445 PF13458 Periplasmic binding protein APT56_21455 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_21455 PF00005 ABC transporter APT56_21460 PF00916 Sulfate permease family APT56_21460 PF01740 STAS domain APT56_21475 PF00768 D-alanyl-D-alanine carboxypeptidase APT56_21475 PF07943 Penicillin-binding protein 5, C-terminal domain APT56_21485 PF12802 MarR family APT56_21490 PF07690 Major Facilitator Superfamily APT56_21495 PF00133 tRNA synthetases class I (I, L, M and V) APT56_21495 PF13603 Leucyl-tRNA synthetase, Domain 2 APT56_21495 PF08264 Anticodon-binding domain of tRNA APT56_21495 PF09334 tRNA synthetases class I (M) APT56_21510 PF00171 Aldehyde dehydrogenase family APT56_21525 PF00583 Acetyltransferase (GNAT) family APT56_21530 PF01425 Amidase APT56_21540 PF07690 Major Facilitator Superfamily APT56_21550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_21550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_21565 PF03466 LysR substrate binding domain APT56_21565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21575 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_21615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21615 PF03466 LysR substrate binding domain APT56_21620 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APT56_21620 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APT56_21625 PF03466 LysR substrate binding domain APT56_21625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21630 PF12795 Mechanosensitive ion channel porin domain APT56_21630 PF00924 Mechanosensitive ion channel APT56_21630 PF12794 Mechanosensitive ion channel inner membrane domain 1 APT56_21670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_21670 PF13426 PAS domain APT56_21670 PF08447 PAS fold APT56_21690 PF08402 TOBE domain APT56_21690 PF00005 ABC transporter APT56_21695 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21700 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21705 PF05544 Proline racemase APT56_21720 PF00571 CBS domain APT56_21740 PF06434 Aconitate hydratase 2 N-terminus APT56_21740 PF00330 Aconitase family (aconitate hydratase) APT56_21740 PF11791 Aconitate B N-terminal domain APT56_21750 PF05724 Thiopurine S-methyltransferase (TPMT) APT56_21755 PF02469 Fasciclin domain APT56_21775 PF00248 Aldo/keto reductase family APT56_21780 PF06719 AraC-type transcriptional regulator N-terminus APT56_21780 PF12833 Helix-turn-helix domain APT56_21790 PF04542 Sigma-70 region 2 APT56_21790 PF04545 Sigma-70, region 4 APT56_21805 PF04325 Protein of unknown function (DUF465) APT56_21820 PF02627 Carboxymuconolactone decarboxylase family APT56_21825 PF00083 Sugar (and other) transporter APT56_21825 PF08946 Osmosensory transporter coiled coil APT56_21835 PF07690 Major Facilitator Superfamily APT56_21840 PF00005 ABC transporter APT56_21845 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21850 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21855 PF12849 PBP superfamily domain APT56_21860 PF13089 Polyphosphate kinase N-terminal domain APT56_21860 PF17941 Polyphosphate kinase C-terminal domain 1 APT56_21860 PF13090 Polyphosphate kinase C-terminal domain 2 APT56_21860 PF02503 Polyphosphate kinase middle domain APT56_21865 PF02541 Ppx/GppA phosphatase family APT56_21875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT56_21875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT56_21875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT56_21875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT56_21880 PF00809 Pterin binding enzyme APT56_21885 PF17862 AAA+ lid domain APT56_21885 PF00004 ATPase family associated with various cellular activities (AAA) APT56_21885 PF01434 Peptidase family M41 APT56_21885 PF06480 FtsH Extracellular APT56_21890 PF01728 FtsJ-like methyltransferase APT56_21895 PF01985 CRS1 / YhbY (CRM) domain APT56_21900 PF03449 Transcription elongation factor, N-terminal APT56_21900 PF01272 Transcription elongation factor, GreA/GreB, C-term APT56_21905 PF02203 Tar ligand binding domain homologue APT56_21905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_21905 PF00672 HAMP domain APT56_21910 PF00860 Permease family APT56_21925 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21930 PF00005 ABC transporter APT56_21930 PF08402 TOBE domain APT56_21935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21935 PF03466 LysR substrate binding domain APT56_21940 PF00300 Histidine phosphatase superfamily (branch 1) APT56_21945 PF00106 short chain dehydrogenase APT56_21955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_21955 PF02142 MGS-like domain APT56_21955 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT56_21960 PF00117 Glutamine amidotransferase class-I APT56_21960 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APT56_21965 PF00923 Transaldolase/Fructose-6-phosphate aldolase APT56_21975 PF01590 GAF domain APT56_21975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_21975 PF00512 His Kinase A (phospho-acceptor) domain APT56_21975 PF08446 PAS fold APT56_21975 PF00360 Phytochrome region APT56_21980 PF00486 Transcriptional regulatory protein, C terminal APT56_21980 PF00072 Response regulator receiver domain APT56_21990 PF01126 Heme oxygenase APT56_21995 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22000 PF00005 ABC transporter APT56_22010 PF02515 CoA-transferase family III APT56_22015 PF02132 RecR protein APT56_22015 PF13662 Toprim domain APT56_22020 PF02575 YbaB/EbfC DNA-binding family APT56_22025 PF12169 DNA polymerase III subunits gamma and tau domain III APT56_22025 PF12170 DNA polymerase III tau subunit V interacting with alpha APT56_22025 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding APT56_22035 PF00580 UvrD/REP helicase N-terminal domain APT56_22035 PF12705 PD-(D/E)XK nuclease superfamily APT56_22035 PF13361 UvrD-like helicase C-terminal domain APT56_22050 PF03060 Nitronate monooxygenase APT56_22065 PF03401 Tripartite tricarboxylate transporter family receptor APT56_22070 PF02515 CoA-transferase family III APT56_22075 PF00378 Enoyl-CoA hydratase/isomerase APT56_22085 PF00682 HMGL-like APT56_22090 PF00501 AMP-binding enzyme APT56_22090 PF13193 AMP-binding enzyme C-terminal domain APT56_22095 PF00378 Enoyl-CoA hydratase/isomerase APT56_22105 PF00768 D-alanyl-D-alanine carboxypeptidase APT56_22115 PF00107 Zinc-binding dehydrogenase APT56_22115 PF08240 Alcohol dehydrogenase GroES-like domain APT56_22125 PF04073 Aminoacyl-tRNA editing domain APT56_22130 PF00589 Phage integrase family APT56_22130 PF02899 Phage integrase, N-terminal SAM-like domain APT56_22135 PF03466 LysR substrate binding domain APT56_22135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_22140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_22140 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_22140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_22145 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_22145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_22145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_22150 PF00593 TonB dependent receptor APT56_22150 PF07715 TonB-dependent Receptor Plug Domain APT56_22170 PF01575 MaoC like domain APT56_22190 PF01202 Shikimate kinase APT56_22200 PF13193 AMP-binding enzyme C-terminal domain APT56_22200 PF00501 AMP-binding enzyme APT56_22215 PF02653 Branched-chain amino acid transport system / permease component APT56_22225 PF00005 ABC transporter APT56_22225 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_22230 PF00005 ABC transporter APT56_22235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_22235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_22240 PF00005 ABC transporter APT56_22245 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22250 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_22255 PF00491 Arginase family APT56_22260 PF09339 IclR helix-turn-helix domain APT56_22260 PF01614 Bacterial transcriptional regulator APT56_22265 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_22270 PF03401 Tripartite tricarboxylate transporter family receptor APT56_22275 PF01144 Coenzyme A transferase APT56_22280 PF01144 Coenzyme A transferase APT56_22285 PF01614 Bacterial transcriptional regulator APT56_22285 PF09339 IclR helix-turn-helix domain APT56_22290 PF01300 Telomere recombination APT56_22290 PF03481 Putative GTP-binding controlling metal-binding APT56_22295 PF02222 ATP-grasp domain APT56_22295 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APT56_22300 PF00731 AIR carboxylase APT56_22305 PF02600 Disulfide bond formation protein DsbB APT56_22310 PF01259 SAICAR synthetase APT56_22320 PF01116 Fructose-bisphosphate aldolase class-II APT56_22325 PF01425 Amidase APT56_22330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_22330 PF00005 ABC transporter APT56_22335 PF12911 N-terminal TM domain of oligopeptide transport permease C APT56_22335 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22340 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_22350 PF01546 Peptidase family M20/M25/M40 APT56_22350 PF07687 Peptidase dimerisation domain APT56_22365 PF00375 Sodium:dicarboxylate symporter family APT56_22385 PF07969 Amidohydrolase family APT56_22390 PF00005 ABC transporter APT56_22395 PF00005 ABC transporter APT56_22400 PF06007 Phosphonate metabolism protein PhnJ APT56_22405 PF05861 Bacterial phosphonate metabolism protein (PhnI) APT56_22410 PF05845 Bacterial phosphonate metabolism protein (PhnH) APT56_22415 PF06754 Phosphonate metabolism protein PhnG APT56_22420 PF00392 Bacterial regulatory proteins, gntR family APT56_22420 PF07702 UTRA domain APT56_22425 PF07969 Amidohydrolase family APT56_22430 PF06299 Protein of unknown function (DUF1045) APT56_22440 PF03466 LysR substrate binding domain APT56_22440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_22450 PF03401 Tripartite tricarboxylate transporter family receptor APT56_22460 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22470 PF00005 ABC transporter APT56_22480 PF01022 Bacterial regulatory protein, arsR family APT56_22490 PF01176 Translation initiation factor 1A / IF-1 APT56_22500 PF08525 Opacity-associated protein A N-terminal motif APT56_22500 PF01551 Peptidase family M23 APT56_22500 PF01476 LysM domain APT56_22510 PF00994 Probable molybdopterin binding domain APT56_22520 PF01384 Phosphate transporter family APT56_22540 PF00226 DnaJ domain APT56_22540 PF01556 DnaJ C terminal domain APT56_22545 PF00583 Acetyltransferase (GNAT) family APT56_22555 PF14834 Glutathione S-transferase, C-terminal domain APT56_22555 PF02798 Glutathione S-transferase, N-terminal domain APT56_22565 PF11339 Protein of unknown function (DUF3141) APT56_22570 PF01515 Phosphate acetyl/butaryl transferase APT56_22575 PF00871 Acetokinase family APT56_22585 PF00916 Sulfate permease family APT56_22585 PF01740 STAS domain APT56_22590 PF03401 Tripartite tricarboxylate transporter family receptor APT56_22595 PF00162 Phosphoglycerate kinase APT56_22600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT56_22600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT56_22605 PF02779 Transketolase, pyrimidine binding domain APT56_22605 PF02780 Transketolase, C-terminal domain APT56_22605 PF00456 Transketolase, thiamine diphosphate binding domain APT56_22615 PF04452 RNA methyltransferase APT56_22620 PF01337 Barstar (barnase inhibitor) APT56_22630 PF03949 Malic enzyme, NAD binding domain APT56_22630 PF01515 Phosphate acetyl/butaryl transferase APT56_22630 PF00390 Malic enzyme, N-terminal domain APT56_22640 PF00155 Aminotransferase class I and II APT56_22645 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APT56_22645 PF01464 Transglycosylase SLT domain APT56_22650 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APT56_22665 PF05957 Bacterial protein of unknown function (DUF883) APT56_22675 PF00005 ABC transporter APT56_22680 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT56_22690 PF10414 Sirohaem synthase dimerisation region APT56_22690 PF14824 Sirohaem biosynthesis protein central APT56_22700 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT56_22705 PF13458 Periplasmic binding protein APT56_22710 PF01613 Flavin reductase like domain APT56_22715 PF00296 Luciferase-like monooxygenase APT56_22725 PF02547 Queuosine biosynthesis protein APT56_22730 PF01702 Queuine tRNA-ribosyltransferase APT56_22735 PF02699 Preprotein translocase subunit APT56_22740 PF07549 SecD/SecF GG Motif APT56_22740 PF02355 Protein export membrane protein APT56_22740 PF13721 SecD export protein N-terminal TM region APT56_22745 PF07549 SecD/SecF GG Motif APT56_22745 PF02355 Protein export membrane protein APT56_22755 PF01411 tRNA synthetases class II (A) APT56_22755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT56_22755 PF02272 DHHA1 domain APT56_22765 PF04055 Radical SAM superfamily APT56_22765 PF00919 Uncharacterized protein family UPF0004 APT56_22765 PF01938 TRAM domain APT56_22770 PF02562 PhoH-like protein APT56_22775 PF02130 Uncharacterized protein family UPF0054 APT56_22780 PF00571 CBS domain APT56_22780 PF03471 Transporter associated domain APT56_22785 PF00795 Carbon-nitrogen hydrolase APT56_22790 PF00248 Aldo/keto reductase family APT56_22825 PF00196 Bacterial regulatory proteins, luxR family APT56_22830 PF06968 Biotin and Thiamin Synthesis associated domain APT56_22830 PF04055 Radical SAM superfamily APT56_22845 PF08534 Redoxin APT56_22855 PF01738 Dienelactone hydrolase family APT56_22865 PF01967 MoaC family APT56_22875 PF02391 MoaE protein APT56_22880 PF00994 Probable molybdopterin binding domain APT56_22890 PF12804 MobA-like NTP transferase domain APT56_22895 PF06463 Molybdenum Cofactor Synthesis C APT56_22895 PF04055 Radical SAM superfamily APT56_22910 PF00037 4Fe-4S binding domain APT56_22910 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APT56_22910 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APT56_22915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APT56_22915 PF00384 Molybdopterin oxidoreductase APT56_22915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT56_22915 PF12838 4Fe-4S dicluster domain APT56_22915 PF01568 Molydopterin dinucleotide binding domain APT56_22920 PF02634 FdhD/NarQ family APT56_22930 PF07690 Major Facilitator Superfamily APT56_22935 PF05175 Methyltransferase small domain APT56_22955 PF03466 LysR substrate binding domain APT56_22955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_22960 PF01177 Asp/Glu/Hydantoin racemase APT56_22965 PF00582 Universal stress protein family APT56_22970 PF00582 Universal stress protein family APT56_22975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_22975 PF08918 PhoQ Sensor APT56_22980 PF00072 Response regulator receiver domain APT56_22980 PF00486 Transcriptional regulatory protein, C terminal APT56_22995 PF00175 Oxidoreductase NAD-binding domain APT56_22995 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_22995 PF00970 Oxidoreductase FAD-binding domain APT56_23000 PF07995 Glucose / Sorbosone dehydrogenase APT56_23005 PF00127 Copper binding proteins, plastocyanin/azurin family APT56_23025 PF03401 Tripartite tricarboxylate transporter family receptor APT56_23030 PF04303 PrpF protein APT56_23035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23035 PF03466 LysR substrate binding domain APT56_23040 PF00583 Acetyltransferase (GNAT) family APT56_23050 PF08281 Sigma-70, region 4 APT56_23050 PF04542 Sigma-70 region 2 APT56_23065 PF07729 FCD domain APT56_23065 PF00392 Bacterial regulatory proteins, gntR family APT56_23070 PF00364 Biotin-requiring enzyme APT56_23070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_23070 PF00364 Biotin-requiring enzyme APT56_23070 PF02785 Biotin carboxylase C-terminal domain APT56_23070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_23070 PF02785 Biotin carboxylase C-terminal domain APT56_23070 PF00289 Biotin carboxylase, N-terminal domain APT56_23070 PF00289 Biotin carboxylase, N-terminal domain APT56_23075 PF01425 Amidase APT56_23085 PF02653 Branched-chain amino acid transport system / permease component APT56_23095 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_23095 PF00005 ABC transporter APT56_23100 PF00005 ABC transporter APT56_23110 PF07715 TonB-dependent Receptor Plug Domain APT56_23110 PF00593 TonB dependent receptor APT56_23120 PF03960 ArsC family APT56_23125 PF01569 PAP2 superfamily APT56_23130 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT56_23130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT56_23135 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_23135 PF12833 Helix-turn-helix domain APT56_23135 PF02805 Metal binding domain of Ada APT56_23135 PF06029 AlkA N-terminal domain APT56_23140 PF04461 Protein of unknown function (DUF520) APT56_23145 PF00005 ABC transporter APT56_23150 PF01032 FecCD transport family APT56_23155 PF01497 Periplasmic binding protein APT56_23160 PF05171 Haemin-degrading HemS.ChuX domain APT56_23170 PF04773 FecR protein APT56_23170 PF16220 Domain of unknown function (DUF4880) APT56_23175 PF04542 Sigma-70 region 2 APT56_23175 PF08281 Sigma-70, region 4 APT56_23195 PF03401 Tripartite tricarboxylate transporter family receptor APT56_23205 PF08279 HTH domain APT56_23205 PF13280 WYL domain APT56_23220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23220 PF03466 LysR substrate binding domain APT56_23230 PF03466 LysR substrate binding domain APT56_23230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23235 PF00324 Amino acid permease APT56_23240 PF00266 Aminotransferase class-V APT56_23245 PF01037 Lrp/AsnC ligand binding domain APT56_23250 PF03006 Haemolysin-III related APT56_23255 PF03576 Peptidase family S58 APT56_23260 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_23265 PF00528 Binding-protein-dependent transport system inner membrane component APT56_23270 PF00005 ABC transporter APT56_23275 PF01551 Peptidase family M23 APT56_23275 PF01476 LysM domain APT56_23295 PF02630 SCO1/SenC APT56_23310 PF00512 His Kinase A (phospho-acceptor) domain APT56_23310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_23315 PF00072 Response regulator receiver domain APT56_23320 PF06481 COX Aromatic Rich Motif APT56_23320 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT56_23325 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT56_23330 PF00510 Cytochrome c oxidase subunit III APT56_23335 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APT56_23345 PF04891 NifQ APT56_23355 PF00593 TonB dependent receptor APT56_23355 PF07715 TonB-dependent Receptor Plug Domain APT56_23360 PF04102 SlyX APT56_23375 PF00390 Malic enzyme, N-terminal domain APT56_23375 PF01515 Phosphate acetyl/butaryl transferase APT56_23375 PF03949 Malic enzyme, NAD binding domain APT56_23390 PF00892 EamA-like transporter family APT56_23410 PF03466 LysR substrate binding domain APT56_23410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23435 PF03466 LysR substrate binding domain APT56_23435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23450 PF00583 Acetyltransferase (GNAT) family APT56_23455 PF01381 Helix-turn-helix APT56_23455 PF08671 Anti-repressor SinI APT56_23460 PF13091 PLD-like domain APT56_23465 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA APT56_23470 PF13532 2OG-Fe(II) oxygenase superfamily APT56_23475 PF03781 Sulfatase-modifying factor enzyme 1 APT56_23490 PF04209 homogentisate 1,2-dioxygenase APT56_23495 PF02308 MgtC family APT56_23505 PF13419 Haloacid dehalogenase-like hydrolase APT56_23510 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_23515 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA APT56_23520 PF00694 Aconitase C-terminal domain APT56_23520 PF00330 Aconitase family (aconitate hydratase) APT56_23530 PF00593 TonB dependent receptor APT56_23530 PF07715 TonB-dependent Receptor Plug Domain APT56_23530 PF07660 Secretin and TonB N terminus short domain APT56_23535 PF04773 FecR protein APT56_23535 PF16220 Domain of unknown function (DUF4880) APT56_23550 PF02378 Phosphotransferase system, EIIC APT56_23555 PF01145 SPFH domain / Band 7 family APT56_23570 PF02868 Thermolysin metallopeptidase, alpha-helical domain APT56_23570 PF01447 Thermolysin metallopeptidase, catalytic domain APT56_23570 PF16485 Protealysin propeptide APT56_23580 PF07690 Major Facilitator Superfamily APT56_23585 PF12833 Helix-turn-helix domain APT56_23585 PF02311 AraC-like ligand binding domain APT56_23600 PF03741 Integral membrane protein TerC family APT56_23605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23605 PF03466 LysR substrate binding domain APT56_23635 PF00850 Histone deacetylase domain APT56_23645 PF07690 Major Facilitator Superfamily APT56_23645 PF00083 Sugar (and other) transporter APT56_23650 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT56_23650 PF06481 COX Aromatic Rich Motif APT56_23655 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT56_23660 PF00510 Cytochrome c oxidase subunit III APT56_23665 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APT56_23675 PF13609 Gram-negative porin APT56_23680 PF13609 Gram-negative porin APT56_23690 PF07690 Major Facilitator Superfamily APT56_23700 PF02798 Glutathione S-transferase, N-terminal domain APT56_23725 PF00196 Bacterial regulatory proteins, luxR family APT56_23735 PF05506 Domain of unknown function (DUF756) APT56_23735 PF04185 Phosphoesterase family APT56_23750 PF03861 ANTAR domain APT56_23750 PF08376 Nitrate and nitrite sensing APT56_23755 PF04324 BFD-like [2Fe-2S] binding domain APT56_23755 PF18267 Rubredoxin NAD+ reductase C-terminal domain APT56_23755 PF13806 Rieske-like [2Fe-2S] domain APT56_23755 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_23755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT56_23755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT56_23760 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_23760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT56_23760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT56_23760 PF04324 BFD-like [2Fe-2S] binding domain APT56_23760 PF18267 Rubredoxin NAD+ reductase C-terminal domain APT56_23760 PF13806 Rieske-like [2Fe-2S] domain APT56_23765 PF00384 Molybdopterin oxidoreductase APT56_23765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT56_23765 PF01568 Molydopterin dinucleotide binding domain APT56_23770 PF00248 Aldo/keto reductase family APT56_23775 PF00248 Aldo/keto reductase family APT56_23780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23780 PF03466 LysR substrate binding domain APT56_23785 PF01253 Translation initiation factor SUI1 APT56_23805 PF01970 Tripartite tricarboxylate transporter TctA family APT56_23815 PF02203 Tar ligand binding domain homologue APT56_23815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_23815 PF00672 HAMP domain APT56_23820 PF13185 GAF domain APT56_23820 PF00990 Diguanylate cyclase, GGDEF domain APT56_23825 PF01022 Bacterial regulatory protein, arsR family APT56_23835 PF00574 Clp protease APT56_23840 PF07690 Major Facilitator Superfamily APT56_23850 PF07690 Major Facilitator Superfamily APT56_23855 PF03401 Tripartite tricarboxylate transporter family receptor APT56_23860 PF00701 Dihydrodipicolinate synthetase family APT56_23865 PF00384 Molybdopterin oxidoreductase APT56_23865 PF01568 Molydopterin dinucleotide binding domain APT56_23870 PF12697 Alpha/beta hydrolase family APT56_23875 PF13673 Acetyltransferase (GNAT) domain APT56_23880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_23880 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_23890 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_23915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_23915 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_23915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_23935 PF01545 Cation efflux family APT56_23940 PF02583 Metal-sensitive transcriptional repressor APT56_23950 PF04954 Siderophore-interacting protein APT56_23950 PF00005 ABC transporter APT56_23950 PF00664 ABC transporter transmembrane region APT56_23950 PF08021 Siderophore-interacting FAD-binding domain APT56_23955 PF04954 Siderophore-interacting protein APT56_23955 PF08021 Siderophore-interacting FAD-binding domain APT56_23955 PF00005 ABC transporter APT56_23955 PF00664 ABC transporter transmembrane region APT56_23965 PF08494 DEAD/H associated APT56_23965 PF00271 Helicase conserved C-terminal domain APT56_23965 PF00270 DEAD/DEAH box helicase APT56_23970 PF04675 DNA ligase N terminus APT56_23970 PF01068 ATP dependent DNA ligase domain APT56_23970 PF04679 ATP dependent DNA ligase C terminal region APT56_23985 PF01758 Sodium Bile acid symporter family APT56_23990 PF03960 ArsC family APT56_23995 PF03358 NADPH-dependent FMN reductase APT56_24000 PF13098 Thioredoxin-like domain APT56_24010 PF00892 EamA-like transporter family APT56_24085 PF00486 Transcriptional regulatory protein, C terminal APT56_24085 PF00072 Response regulator receiver domain APT56_24090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_24090 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT56_24090 PF00072 Response regulator receiver domain APT56_24090 PF00512 His Kinase A (phospho-acceptor) domain APT56_24090 PF01627 Hpt domain APT56_24090 PF00672 HAMP domain APT56_24095 PF03705 CheR methyltransferase, all-alpha domain APT56_24095 PF01739 CheR methyltransferase, SAM binding domain APT56_24100 PF01339 CheB methylesterase APT56_24105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_24105 PF01590 GAF domain APT56_24105 PF08446 PAS fold APT56_24105 PF00360 Phytochrome region APT56_24105 PF00512 His Kinase A (phospho-acceptor) domain APT56_24120 PF03572 Peptidase family S41 APT56_24120 PF13180 PDZ domain APT56_24155 PF01965 DJ-1/PfpI family APT56_24165 PF00563 EAL domain APT56_24165 PF04940 Sensors of blue-light using FAD APT56_24170 PF07690 Major Facilitator Superfamily APT56_24185 PF00158 Sigma-54 interaction domain APT56_24185 PF00072 Response regulator receiver domain APT56_24185 PF02954 Bacterial regulatory protein, Fis family APT56_24190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_24190 PF00512 His Kinase A (phospho-acceptor) domain APT56_24200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_24200 PF03466 LysR substrate binding domain APT56_24215 PF00905 Penicillin binding protein transpeptidase domain APT56_24220 PF00768 D-alanyl-D-alanine carboxypeptidase APT56_24260 PF00166 Chaperonin 10 Kd subunit APT56_24265 PF00118 TCP-1/cpn60 chaperonin family APT56_24275 PF01047 MarR family APT56_24280 PF00171 Aldehyde dehydrogenase family APT56_24285 PF01042 Endoribonuclease L-PSP APT56_24290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_24290 PF03466 LysR substrate binding domain APT56_24295 PF06052 3-hydroxyanthranilic acid dioxygenase APT56_24320 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_24320 PF00005 ABC transporter APT56_24325 PF00005 ABC transporter APT56_24330 PF08125 Mannitol dehydrogenase C-terminal domain APT56_24330 PF01232 Mannitol dehydrogenase Rossmann domain APT56_24335 PF01219 Prokaryotic diacylglycerol kinase APT56_24340 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_24345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APT56_24350 PF02464 Competence-damaged protein APT56_24355 PF04608 Phosphatidylglycerophosphatase A APT56_24360 PF02769 AIR synthase related protein, C-terminal domain APT56_24360 PF00586 AIR synthase related protein, N-terminal domain APT56_24365 PF01029 NusB family APT56_24370 PF00885 6,7-dimethyl-8-ribityllumazine synthase APT56_24375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APT56_24375 PF00925 GTP cyclohydrolase II APT56_24395 PF00005 ABC transporter APT56_24400 PF00528 Binding-protein-dependent transport system inner membrane component APT56_24405 PF00528 Binding-protein-dependent transport system inner membrane component APT56_24415 PF02881 SRP54-type protein, helical bundle domain APT56_24415 PF00448 SRP54-type protein, GTPase domain APT56_24425 PF01467 Cytidylyltransferase-like APT56_24430 PF00037 4Fe-4S binding domain APT56_24435 PF03594 Benzoate membrane transport protein APT56_24450 PF07690 Major Facilitator Superfamily APT56_24470 PF07715 TonB-dependent Receptor Plug Domain APT56_24470 PF00593 TonB dependent receptor APT56_24475 PF06071 Protein of unknown function (DUF933) APT56_24475 PF01926 50S ribosome-binding GTPase APT56_24485 PF01195 Peptidyl-tRNA hydrolase APT56_24490 PF14693 Ribosomal protein TL5, C-terminal domain APT56_24490 PF01386 Ribosomal L25p family APT56_24495 PF14572 Phosphoribosyl synthetase-associated domain APT56_24495 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT56_24505 PF08544 GHMP kinases C terminal APT56_24505 PF00288 GHMP kinases N terminal domain APT56_24510 PF00672 HAMP domain APT56_24510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_24510 PF02203 Tar ligand binding domain homologue APT56_24515 PF03550 Outer membrane lipoprotein LolB APT56_24525 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT56_24525 PF06827 Zinc finger found in FPG and IleRS APT56_24525 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT56_24535 PF01494 FAD binding domain APT56_24545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_24545 PF03466 LysR substrate binding domain APT56_24550 PF04209 homogentisate 1,2-dioxygenase APT56_24560 PF01553 Acyltransferase APT56_24565 PF00884 Sulfatase APT56_24570 PF00392 Bacterial regulatory proteins, gntR family APT56_24570 PF07729 FCD domain APT56_24575 PF01370 NAD dependent epimerase/dehydratase family APT56_24580 PF08450 SMP-30/Gluconolactonase/LRE-like region APT56_24585 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_24595 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APT56_24605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_24605 PF00672 HAMP domain APT56_24605 PF00512 His Kinase A (phospho-acceptor) domain APT56_24610 PF00486 Transcriptional regulatory protein, C terminal APT56_24610 PF00072 Response regulator receiver domain APT56_24615 PF02913 FAD linked oxidases, C-terminal domain APT56_24615 PF01565 FAD binding domain APT56_24625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT56_24625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT56_24625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT56_24625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT56_24630 PF00342 Phosphoglucose isomerase APT56_24645 PF13439 Glycosyltransferase Family 4 APT56_24645 PF00534 Glycosyl transferases group 1 APT56_24650 PF13439 Glycosyltransferase Family 4 APT56_24650 PF00534 Glycosyl transferases group 1 APT56_24655 PF13537 Glutamine amidotransferase domain APT56_24655 PF00733 Asparagine synthase APT56_24660 PF13439 Glycosyltransferase Family 4 APT56_24660 PF00534 Glycosyl transferases group 1 APT56_24665 PF03023 Lipid II flippase MurJ APT56_24670 PF01370 NAD dependent epimerase/dehydratase family APT56_24675 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT56_24675 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT56_24675 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT56_24680 PF00953 Glycosyl transferase family 4 APT56_24685 PF03232 Ubiquinone biosynthesis protein COQ7 APT56_24695 PF00303 Thymidylate synthase APT56_24700 PF00563 EAL domain APT56_24700 PF03707 Bacterial signalling protein N terminal repeat APT56_24700 PF00990 Diguanylate cyclase, GGDEF domain APT56_24705 PF00186 Dihydrofolate reductase APT56_24710 PF00155 Aminotransferase class I and II APT56_24715 PF00202 Aminotransferase class-III APT56_24720 PF00171 Aldehyde dehydrogenase family APT56_24730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_24735 PF00528 Binding-protein-dependent transport system inner membrane component APT56_24740 PF00528 Binding-protein-dependent transport system inner membrane component APT56_24745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_24745 PF00005 ABC transporter APT56_24750 PF01425 Amidase APT56_24765 PF02347 Glycine cleavage system P-protein APT56_24770 PF01597 Glycine cleavage H-protein APT56_24775 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT56_24775 PF01571 Aminomethyltransferase folate-binding domain APT56_24780 PF02535 ZIP Zinc transporter APT56_24785 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT56_24785 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT56_24795 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain APT56_24795 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain APT56_24795 PF01276 Orn/Lys/Arg decarboxylase, major domain APT56_24810 PF00990 Diguanylate cyclase, GGDEF domain APT56_24810 PF08448 PAS fold APT56_24820 PF00692 dUTPase APT56_24835 PF10609 NUBPL iron-transfer P-loop NTPase APT56_24845 PF01588 Putative tRNA binding domain APT56_24845 PF09334 tRNA synthetases class I (M) APT56_24865 PF01757 Acyltransferase family APT56_24875 PF00072 Response regulator receiver domain APT56_24875 PF00486 Transcriptional regulatory protein, C terminal APT56_24880 PF07885 Ion channel APT56_24880 PF02254 TrkA-N domain APT56_24885 PF13698 Domain of unknown function (DUF4156) APT56_24905 PF00563 EAL domain APT56_24905 PF12792 CSS motif domain associated with EAL APT56_24910 PF00440 Bacterial regulatory proteins, tetR family APT56_24915 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus APT56_24915 PF00561 alpha/beta hydrolase fold APT56_24920 PF02321 Outer membrane efflux protein APT56_24920 PF08139 Prokaryotic membrane lipoprotein lipid attachment site APT56_24925 PF13533 Biotin-lipoyl like APT56_24930 PF00005 ABC transporter APT56_24945 PF00106 short chain dehydrogenase APT56_24950 PF01654 Cytochrome bd terminal oxidase subunit I APT56_24955 PF02322 Cytochrome bd terminal oxidase subunit II APT56_24960 PF00392 Bacterial regulatory proteins, gntR family APT56_24960 PF00155 Aminotransferase class I and II APT56_24970 PF03069 Acetamidase/Formamidase family APT56_24975 PF00005 ABC transporter APT56_24980 PF00005 ABC transporter APT56_24980 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_24990 PF11862 Domain of unknown function (DUF3382) APT56_24990 PF02653 Branched-chain amino acid transport system / permease component APT56_25000 PF00512 His Kinase A (phospho-acceptor) domain APT56_25000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_25000 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_25000 PF00072 Response regulator receiver domain APT56_25000 PF01627 Hpt domain APT56_25005 PF00072 Response regulator receiver domain APT56_25020 PF03401 Tripartite tricarboxylate transporter family receptor APT56_25030 PF01266 FAD dependent oxidoreductase APT56_25035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25035 PF03466 LysR substrate binding domain APT56_25040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_25045 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_25045 PF00034 Cytochrome c APT56_25050 PF00043 Glutathione S-transferase, C-terminal domain APT56_25050 PF02798 Glutathione S-transferase, N-terminal domain APT56_25055 PF07690 Major Facilitator Superfamily APT56_25065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25065 PF03466 LysR substrate binding domain APT56_25070 PF01979 Amidohydrolase family APT56_25075 PF01546 Peptidase family M20/M25/M40 APT56_25075 PF07687 Peptidase dimerisation domain APT56_25095 PF05426 Alginate lyase APT56_25110 PF00444 Ribosomal protein L36 APT56_25120 PF00330 Aconitase family (aconitate hydratase) APT56_25120 PF00694 Aconitase C-terminal domain APT56_25125 PF04303 PrpF protein APT56_25135 PF14698 Argininosuccinate lyase C-terminal APT56_25135 PF00206 Lyase APT56_25140 PF00512 His Kinase A (phospho-acceptor) domain APT56_25140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_25140 PF00672 HAMP domain APT56_25150 PF05853 beta-keto acid cleavage enzyme APT56_25165 PF13302 Acetyltransferase (GNAT) domain APT56_25170 PF04055 Radical SAM superfamily APT56_25200 PF03401 Tripartite tricarboxylate transporter family receptor APT56_25205 PF00682 HMGL-like APT56_25210 PF02515 CoA-transferase family III APT56_25215 PF03466 LysR substrate binding domain APT56_25215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25220 PF02390 Putative methyltransferase APT56_25225 PF00561 alpha/beta hydrolase fold APT56_25230 PF02597 ThiS family APT56_25230 PF05690 Thiazole biosynthesis protein ThiG APT56_25235 PF04972 BON domain APT56_25235 PF01476 LysM domain APT56_25240 PF02881 SRP54-type protein, helical bundle domain APT56_25240 PF00448 SRP54-type protein, GTPase domain APT56_25240 PF02978 Signal peptide binding domain APT56_25245 PF01578 Cytochrome C assembly protein APT56_25255 PF01510 N-acetylmuramoyl-L-alanine amidase APT56_25260 PF00043 Glutathione S-transferase, C-terminal domain APT56_25260 PF13417 Glutathione S-transferase, N-terminal domain APT56_25285 PF01370 NAD dependent epimerase/dehydratase family APT56_25290 PF00171 Aldehyde dehydrogenase family APT56_25295 PF03466 LysR substrate binding domain APT56_25295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25300 PF02321 Outer membrane efflux protein APT56_25305 PF00529 HlyD membrane-fusion protein of T1SS APT56_25310 PF00664 ABC transporter transmembrane region APT56_25310 PF00005 ABC transporter APT56_25335 PF09339 IclR helix-turn-helix domain APT56_25335 PF01614 Bacterial transcriptional regulator APT56_25345 PF01081 KDPG and KHG aldolase APT56_25350 PF13378 Enolase C-terminal domain-like APT56_25350 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_25355 PF07690 Major Facilitator Superfamily APT56_25360 PF00005 ABC transporter APT56_25375 PF07715 TonB-dependent Receptor Plug Domain APT56_25375 PF00593 TonB dependent receptor APT56_25380 PF07690 Major Facilitator Superfamily APT56_25390 PF01381 Helix-turn-helix APT56_25395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_25395 PF00183 Hsp90 protein APT56_25405 PF00860 Permease family APT56_25415 PF00589 Phage integrase family APT56_25430 PF00149 Calcineurin-like phosphoesterase APT56_25450 PF07996 Type IV secretion system proteins APT56_25480 PF05973 Phage derived protein Gp49-like (DUF891) APT56_25495 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_25500 PF05698 Bacterial trigger factor protein (TF) C-terminus APT56_25505 PF00005 ABC transporter APT56_25515 PF02653 Branched-chain amino acid transport system / permease component APT56_25520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT56_25520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT56_25530 PF05853 beta-keto acid cleavage enzyme APT56_25545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25545 PF03466 LysR substrate binding domain APT56_25650 PF00486 Transcriptional regulatory protein, C terminal APT56_25650 PF00072 Response regulator receiver domain APT56_25655 PF04542 Sigma-70 region 2 APT56_25655 PF08281 Sigma-70, region 4 APT56_25675 PF03466 LysR substrate binding domain APT56_25675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25680 PF04954 Siderophore-interacting protein APT56_25680 PF08021 Siderophore-interacting FAD-binding domain APT56_25685 PF03551 Transcriptional regulator PadR-like family APT56_25700 PF07690 Major Facilitator Superfamily APT56_25705 PF03807 NADP oxidoreductase coenzyme F420-dependent APT56_25705 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT56_25710 PF01070 FMN-dependent dehydrogenase APT56_25715 PF02913 FAD linked oxidases, C-terminal domain APT56_25715 PF01565 FAD binding domain APT56_25725 PF08402 TOBE domain APT56_25725 PF00005 ABC transporter APT56_25730 PF00528 Binding-protein-dependent transport system inner membrane component APT56_25735 PF00701 Dihydrodipicolinate synthetase family APT56_25750 PF01594 AI-2E family transporter APT56_25755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25755 PF03466 LysR substrate binding domain APT56_25760 PF13533 Biotin-lipoyl like APT56_25765 PF00873 AcrB/AcrD/AcrF family APT56_25770 PF02321 Outer membrane efflux protein APT56_25810 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) APT56_25820 PF00392 Bacterial regulatory proteins, gntR family APT56_25820 PF07729 FCD domain APT56_25830 PF08501 Shikimate dehydrogenase substrate binding domain APT56_25830 PF01488 Shikimate / quinate 5-dehydrogenase APT56_25830 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APT56_25835 PF13458 Periplasmic binding protein APT56_25840 PF02653 Branched-chain amino acid transport system / permease component APT56_25850 PF00005 ABC transporter APT56_25850 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_25855 PF00005 ABC transporter APT56_25865 PF00676 Dehydrogenase E1 component APT56_25875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT56_25875 PF02817 e3 binding domain APT56_25875 PF00364 Biotin-requiring enzyme APT56_25880 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_25880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_25885 PF03466 LysR substrate binding domain APT56_25885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25890 PF00920 Dehydratase family APT56_25900 PF08502 LeuA allosteric (dimerisation) domain APT56_25900 PF00682 HMGL-like APT56_25905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25905 PF03466 LysR substrate binding domain APT56_25925 PF06508 Queuosine biosynthesis protein QueC APT56_25930 PF00311 Phosphoenolpyruvate carboxylase APT56_25935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_25935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_25940 PF02667 Short chain fatty acid transporter APT56_25950 PF01614 Bacterial transcriptional regulator APT56_25950 PF09339 IclR helix-turn-helix domain APT56_25955 PF01144 Coenzyme A transferase APT56_25960 PF01144 Coenzyme A transferase APT56_25975 PF12146 Serine aminopeptidase, S33 APT56_25995 PF00484 Carbonic anhydrase APT56_26000 PF00392 Bacterial regulatory proteins, gntR family APT56_26000 PF07729 FCD domain APT56_26015 PF02653 Branched-chain amino acid transport system / permease component APT56_26020 PF11862 Domain of unknown function (DUF3382) APT56_26020 PF02653 Branched-chain amino acid transport system / permease component APT56_26025 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_26025 PF00005 ABC transporter APT56_26030 PF00005 ABC transporter APT56_26050 PF13417 Glutathione S-transferase, N-terminal domain APT56_26050 PF00043 Glutathione S-transferase, C-terminal domain APT56_26065 PF03466 LysR substrate binding domain APT56_26065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26075 PF03466 LysR substrate binding domain APT56_26080 PF07690 Major Facilitator Superfamily APT56_26085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT56_26085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT56_26100 PF03401 Tripartite tricarboxylate transporter family receptor APT56_26105 PF00501 AMP-binding enzyme APT56_26105 PF13193 AMP-binding enzyme C-terminal domain APT56_26120 PF03079 ARD/ARD' family APT56_26125 PF03180 NLPA lipoprotein APT56_26135 PF02441 Flavoprotein APT56_26140 PF00462 Glutaredoxin APT56_26145 PF05175 Methyltransferase small domain APT56_26145 PF17827 PrmC N-terminal domain APT56_26150 PF03462 PCRF domain APT56_26150 PF00472 RF-1 domain APT56_26155 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APT56_26155 PF01488 Shikimate / quinate 5-dehydrogenase APT56_26155 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APT56_26165 PF01810 LysE type translocator APT56_26170 PF01037 Lrp/AsnC ligand binding domain APT56_26180 PF00892 EamA-like transporter family APT56_26185 PF03401 Tripartite tricarboxylate transporter family receptor APT56_26190 PF01261 Xylose isomerase-like TIM barrel APT56_26195 PF07715 TonB-dependent Receptor Plug Domain APT56_26195 PF00593 TonB dependent receptor APT56_26205 PF07690 Major Facilitator Superfamily APT56_26210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26210 PF03466 LysR substrate binding domain APT56_26215 PF07729 FCD domain APT56_26215 PF00392 Bacterial regulatory proteins, gntR family APT56_26220 PF07005 Sugar-binding N-terminal domain APT56_26220 PF17042 Nucleotide-binding C-terminal domain APT56_26225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_26225 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_26230 PF01370 NAD dependent epimerase/dehydratase family APT56_26235 PF01261 Xylose isomerase-like TIM barrel APT56_26240 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_26255 PF12697 Alpha/beta hydrolase family APT56_26275 PF00795 Carbon-nitrogen hydrolase APT56_26280 PF07690 Major Facilitator Superfamily APT56_26285 PF03466 LysR substrate binding domain APT56_26285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26290 PF00501 AMP-binding enzyme APT56_26290 PF13193 AMP-binding enzyme C-terminal domain APT56_26295 PF00106 short chain dehydrogenase APT56_26300 PF02803 Thiolase, C-terminal domain APT56_26300 PF00108 Thiolase, N-terminal domain APT56_26305 PF02264 LamB porin APT56_26315 PF00348 Polyprenyl synthetase APT56_26320 PF00829 Ribosomal prokaryotic L21 protein APT56_26325 PF01016 Ribosomal L27 protein APT56_26330 PF01018 GTP1/OBG APT56_26330 PF01926 50S ribosome-binding GTPase APT56_26335 PF01472 PUA domain APT56_26335 PF00696 Amino acid kinase family APT56_26350 PF02355 Protein export membrane protein APT56_26350 PF07549 SecD/SecF GG Motif APT56_26355 PF01964 Radical SAM ThiC family APT56_26355 PF13667 ThiC-associated domain APT56_26360 PF02913 FAD linked oxidases, C-terminal domain APT56_26360 PF01565 FAD binding domain APT56_26365 PF07729 FCD domain APT56_26365 PF00392 Bacterial regulatory proteins, gntR family APT56_26370 PF00563 EAL domain APT56_26370 PF00990 Diguanylate cyclase, GGDEF domain APT56_26370 PF08447 PAS fold APT56_26370 PF05231 MASE1 APT56_26370 PF13426 PAS domain APT56_26370 PF08448 PAS fold APT56_26375 PF00899 ThiF family APT56_26380 PF13180 PDZ domain APT56_26380 PF03572 Peptidase family S41 APT56_26385 PF01551 Peptidase family M23 APT56_26390 PF00300 Histidine phosphatase superfamily (branch 1) APT56_26400 PF00462 Glutaredoxin APT56_26405 PF02556 Preprotein translocase subunit SecB APT56_26410 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APT56_26410 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APT56_26415 PF03401 Tripartite tricarboxylate transporter family receptor APT56_26420 PF00588 SpoU rRNA Methylase family APT56_26430 PF08241 Methyltransferase domain APT56_26435 PF04107 Glutamate-cysteine ligase family 2(GCS2) APT56_26440 PF02386 Cation transport protein APT56_26445 PF02254 TrkA-N domain APT56_26445 PF02080 TrkA-C domain APT56_26450 PF02954 Bacterial regulatory protein, Fis family APT56_26450 PF00072 Response regulator receiver domain APT56_26450 PF00158 Sigma-54 interaction domain APT56_26455 PF00989 PAS fold APT56_26455 PF00512 His Kinase A (phospho-acceptor) domain APT56_26455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_26455 PF00672 HAMP domain APT56_26465 PF01189 16S rRNA methyltransferase RsmB/F APT56_26465 PF01029 NusB family APT56_26470 PF01810 LysE type translocator APT56_26475 PF04055 Radical SAM superfamily APT56_26475 PF00919 Uncharacterized protein family UPF0004 APT56_26475 PF18693 TRAM domain APT56_26480 PF00893 Small Multidrug Resistance protein APT56_26485 PF01638 HxlR-like helix-turn-helix APT56_26495 PF03641 Possible lysine decarboxylase APT56_26505 PF13419 Haloacid dehalogenase-like hydrolase APT56_26515 PF02911 Formyl transferase, C-terminal domain APT56_26515 PF00551 Formyl transferase APT56_26520 PF01327 Polypeptide deformylase APT56_26525 PF17782 DprA winged helix domain APT56_26525 PF02481 DNA recombination-mediator protein A APT56_26530 PF00682 HMGL-like APT56_26540 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_26545 PF00155 Aminotransferase class I and II APT56_26550 PF01168 Alanine racemase, N-terminal domain APT56_26555 PF03401 Tripartite tricarboxylate transporter family receptor APT56_26575 PF00291 Pyridoxal-phosphate dependent enzyme APT56_26575 PF00585 C-terminal regulatory domain of Threonine dehydratase APT56_26580 PF13609 Gram-negative porin APT56_26590 PF03466 LysR substrate binding domain APT56_26590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26595 PF00156 Phosphoribosyl transferase domain APT56_26600 PF00005 ABC transporter APT56_26600 PF00664 ABC transporter transmembrane region APT56_26605 PF00664 ABC transporter transmembrane region APT56_26605 PF00005 ABC transporter APT56_26610 PF08173 Membrane bound YbgT-like protein APT56_26615 PF02322 Cytochrome bd terminal oxidase subunit II APT56_26620 PF01654 Cytochrome bd terminal oxidase subunit I APT56_26630 PF02222 ATP-grasp domain APT56_26635 PF00571 CBS domain APT56_26635 PF01380 SIS domain APT56_26655 PF00005 ABC transporter APT56_26660 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APT56_26665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT56_26670 PF07475 HPr Serine kinase C-terminal domain APT56_26670 PF02603 HPr Serine kinase N terminus APT56_26675 PF00155 Aminotransferase class I and II APT56_26675 PF00392 Bacterial regulatory proteins, gntR family APT56_26680 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_26680 PF00034 Cytochrome c APT56_26690 PF03668 P-loop ATPase protein family APT56_26695 PF03330 Lytic transglycolase APT56_26695 PF05036 Sporulation related domain APT56_26700 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT56_26700 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT56_26705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT56_26710 PF02021 Uncharacterised protein family UPF0102 APT56_26715 PF13580 SIS domain APT56_26720 PF04972 BON domain APT56_26725 PF00578 AhpC/TSA family APT56_26730 PF03180 NLPA lipoprotein APT56_26735 PF00696 Amino acid kinase family APT56_26745 PF00440 Bacterial regulatory proteins, tetR family APT56_26750 PF00939 Sodium:sulfate symporter transmembrane region APT56_26755 PF02615 Malate/L-lactate dehydrogenase APT56_26760 PF01098 Cell cycle protein APT56_26765 PF03717 Penicillin-binding Protein dimerisation domain APT56_26765 PF00905 Penicillin binding protein transpeptidase domain APT56_26775 PF04085 rod shape-determining protein MreC APT56_26785 PF02686 Glu-tRNAGln amidotransferase C subunit APT56_26790 PF01425 Amidase APT56_26795 PF02934 GatB/GatE catalytic domain APT56_26795 PF02637 GatB domain APT56_26805 PF00156 Phosphoribosyl transferase domain APT56_26810 PF03372 Endonuclease/Exonuclease/phosphatase family APT56_26815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT56_26815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APT56_26825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26825 PF03466 LysR substrate binding domain APT56_26840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26840 PF03466 LysR substrate binding domain APT56_26845 PF13458 Periplasmic binding protein APT56_26855 PF00005 ABC transporter APT56_26855 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_26860 PF00005 ABC transporter APT56_26865 PF02566 OsmC-like protein APT56_26870 PF01047 MarR family APT56_26880 PF00501 AMP-binding enzyme APT56_26890 PF02653 Branched-chain amino acid transport system / permease component APT56_26905 PF00005 ABC transporter APT56_26910 PF14535 AMP-binding enzyme C-terminal domain APT56_26910 PF00501 AMP-binding enzyme APT56_26925 PF04143 Sulphur transport APT56_26935 PF00753 Metallo-beta-lactamase superfamily APT56_26940 PF03976 Polyphosphate kinase 2 (PPK2) APT56_26955 PF00534 Glycosyl transferases group 1 APT56_26955 PF13439 Glycosyltransferase Family 4 APT56_26960 PF06965 Na+/H+ antiporter 1 APT56_26965 PF04343 Protein of unknown function, DUF488 APT56_26980 PF01520 N-acetylmuramoyl-L-alanine amidase APT56_26990 PF02581 Thiamine monophosphate synthase APT56_26990 PF03070 TENA/THI-4/PQQC family APT56_26990 PF08543 Phosphomethylpyrimidine kinase APT56_27010 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_27010 PF17287 POTRA domain APT56_27010 PF08479 POTRA domain, ShlB-type APT56_27015 PF03167 Uracil DNA glycosylase superfamily APT56_27020 PF00271 Helicase conserved C-terminal domain APT56_27020 PF00270 DEAD/DEAH box helicase APT56_27030 PF12627 Probable RNA and SrmB- binding site of polymerase A APT56_27030 PF01743 Poly A polymerase head domain APT56_27035 PF01464 Transglycosylase SLT domain APT56_27035 PF14718 Soluble lytic murein transglycosylase L domain APT56_27040 PF01812 5-formyltetrahydrofolate cyclo-ligase family APT56_27045 PF14403 Circularly permuted ATP-grasp type 2 APT56_27055 PF01841 Transglutaminase-like superfamily APT56_27055 PF08379 Bacterial transglutaminase-like N-terminal region APT56_27065 PF03401 Tripartite tricarboxylate transporter family receptor APT56_27070 PF02219 Methylenetetrahydrofolate reductase APT56_27075 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV APT56_27080 PF05221 S-adenosyl-L-homocysteine hydrolase APT56_27080 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APT56_27085 PF13439 Glycosyltransferase Family 4 APT56_27085 PF00534 Glycosyl transferases group 1 APT56_27095 PF00561 alpha/beta hydrolase fold APT56_27100 PF00694 Aconitase C-terminal domain APT56_27105 PF00330 Aconitase family (aconitate hydratase) APT56_27110 PF03401 Tripartite tricarboxylate transporter family receptor APT56_27115 PF03466 LysR substrate binding domain APT56_27115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_27120 PF01613 Flavin reductase like domain APT56_27135 PF13458 Periplasmic binding protein APT56_27145 PF00005 ABC transporter APT56_27155 PF00083 Sugar (and other) transporter APT56_27160 PF01425 Amidase APT56_27165 PF00438 S-adenosylmethionine synthetase, N-terminal domain APT56_27165 PF02772 S-adenosylmethionine synthetase, central domain APT56_27165 PF02773 S-adenosylmethionine synthetase, C-terminal domain APT56_27175 PF03279 Bacterial lipid A biosynthesis acyltransferase APT56_27180 PF01678 Diaminopimelate epimerase APT56_27190 PF02899 Phage integrase, N-terminal SAM-like domain APT56_27190 PF00589 Phage integrase family APT56_27195 PF03824 High-affinity nickel-transport protein APT56_27205 PF01297 Zinc-uptake complex component A periplasmic APT56_27210 PF00950 ABC 3 transport family APT56_27215 PF00005 ABC transporter APT56_27220 PF01475 Ferric uptake regulator family APT56_27225 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT56_27225 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT56_27230 PF01258 Prokaryotic dksA/traR C4-type zinc finger APT56_27235 PF00227 Proteasome subunit APT56_27240 PF00004 ATPase family associated with various cellular activities (AAA) APT56_27240 PF07724 AAA domain (Cdc48 subfamily) APT56_27250 PF01923 Cobalamin adenosyltransferase APT56_27255 PF04055 Radical SAM superfamily APT56_27255 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family APT56_27260 PF00356 Bacterial regulatory proteins, lacI family APT56_27270 PF03099 Biotin/lipoate A/B protein ligase family APT56_27275 PF04359 Protein of unknown function (DUF493) APT56_27280 PF01063 Amino-transferase class IV APT56_27285 PF07943 Penicillin-binding protein 5, C-terminal domain APT56_27285 PF00768 D-alanyl-D-alanine carboxypeptidase APT56_27305 PF00005 ABC transporter APT56_27310 PF02405 Permease MlaE APT56_27320 PF03309 Type III pantothenate kinase APT56_27325 PF00534 Glycosyl transferases group 1 APT56_27325 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APT56_27330 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT56_27340 PF16363 GDP-mannose 4,6 dehydratase APT56_27345 PF00535 Glycosyl transferase family 2 APT56_27355 PF00534 Glycosyl transferases group 1 APT56_27355 PF13439 Glycosyltransferase Family 4 APT56_27365 PF00005 ABC transporter APT56_27375 PF13439 Glycosyltransferase Family 4 APT56_27375 PF00534 Glycosyl transferases group 1 APT56_27385 PF00892 EamA-like transporter family APT56_27400 PF07690 Major Facilitator Superfamily APT56_27410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APT56_27415 PF00483 Nucleotidyl transferase APT56_27420 PF16363 GDP-mannose 4,6 dehydratase APT56_27425 PF13091 PLD-like domain APT56_27430 PF03372 Endonuclease/Exonuclease/phosphatase family APT56_27435 PF01336 OB-fold nucleic acid binding domain APT56_27435 PF02938 GAD domain APT56_27435 PF00152 tRNA synthetases class II (D, K and N) APT56_27460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT56_27460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT56_27475 PF00701 Dihydrodipicolinate synthetase family APT56_27480 PF13185 GAF domain APT56_27485 PF00155 Aminotransferase class I and II APT56_27490 PF01040 UbiA prenyltransferase family APT56_27495 PF06476 Protein of unknown function (DUF1090) APT56_27510 PF00392 Bacterial regulatory proteins, gntR family APT56_27510 PF07729 FCD domain APT56_27515 PF01274 Malate synthase APT56_27545 PF08241 Methyltransferase domain APT56_27550 PF00436 Single-strand binding protein family APT56_27555 PF07690 Major Facilitator Superfamily APT56_27560 PF17755 UvrA DNA-binding domain APT56_27560 PF17760 UvrA interaction domain APT56_27565 PF02798 Glutathione S-transferase, N-terminal domain APT56_27565 PF14497 Glutathione S-transferase, C-terminal domain APT56_27570 PF13286 Phosphohydrolase-associated domain APT56_27570 PF01966 HD domain APT56_27575 PF01761 3-dehydroquinate synthase APT56_27580 PF01202 Shikimate kinase APT56_27585 PF00905 Penicillin binding protein transpeptidase domain APT56_27585 PF00912 Transglycosylase APT56_27585 PF17092 Penicillin-binding protein OB-like domain APT56_27595 PF13333 Integrase core domain APT56_27595 PF00665 Integrase core domain APT56_27595 PF13276 HTH-like domain APT56_27600 PF01491 Frataxin-like domain APT56_27610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT56_27610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT56_27620 PF05140 ResB-like family APT56_27630 PF01926 50S ribosome-binding GTPase APT56_27635 PF00490 Delta-aminolevulinic acid dehydratase APT56_27645 PF11412 Disulphide bond corrector protein DsbC APT56_27645 PF02683 Cytochrome C biogenesis protein transmembrane region APT56_27650 PF03091 CutA1 divalent ion tolerance protein APT56_27655 PF01230 HIT domain APT56_27660 PF01196 Ribosomal protein L17 APT56_27665 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APT56_27665 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APT56_27665 PF01000 RNA polymerase Rpb3/RpoA insert domain APT56_27670 PF00163 Ribosomal protein S4/S9 N-terminal domain APT56_27670 PF01479 S4 domain APT56_27675 PF00411 Ribosomal protein S11 APT56_27680 PF00416 Ribosomal protein S13/S18 APT56_27685 PF01176 Translation initiation factor 1A / IF-1 APT56_27690 PF00344 SecY translocase APT56_27695 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APT56_27700 PF00327 Ribosomal protein L30p/L7e APT56_27705 PF03719 Ribosomal protein S5, C-terminal domain APT56_27705 PF00333 Ribosomal protein S5, N-terminal domain APT56_27710 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APT56_27715 PF00347 Ribosomal protein L6 APT56_27720 PF00410 Ribosomal protein S8 APT56_27725 PF00253 Ribosomal protein S14p/S29e APT56_27730 PF00281 Ribosomal protein L5 APT56_27730 PF00673 ribosomal L5P family C-terminus APT56_27735 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APT56_27740 PF00238 Ribosomal protein L14p/L23e APT56_27750 PF00171 Aldehyde dehydrogenase family APT56_27760 PF12833 Helix-turn-helix domain APT56_27760 PF14525 AraC-binding-like domain APT56_27765 PF00561 alpha/beta hydrolase fold APT56_27775 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_27775 PF00005 ABC transporter APT56_27780 PF00005 ABC transporter APT56_27800 PF00366 Ribosomal protein S17 APT56_27805 PF00831 Ribosomal L29 protein APT56_27810 PF00252 Ribosomal protein L16p/L10e APT56_27815 PF00189 Ribosomal protein S3, C-terminal domain APT56_27815 PF07650 KH domain APT56_27820 PF00237 Ribosomal protein L22p/L17e APT56_27825 PF00203 Ribosomal protein S19 APT56_27830 PF03947 Ribosomal Proteins L2, C-terminal domain APT56_27830 PF00181 Ribosomal Proteins L2, RNA binding domain APT56_27835 PF00276 Ribosomal protein L23 APT56_27840 PF00573 Ribosomal protein L4/L1 family APT56_27845 PF00297 Ribosomal protein L3 APT56_27850 PF00338 Ribosomal protein S10p/S20e APT56_27855 PF00009 Elongation factor Tu GTP binding domain APT56_27855 PF03144 Elongation factor Tu domain 2 APT56_27855 PF03143 Elongation factor Tu C-terminal domain APT56_27860 PF00009 Elongation factor Tu GTP binding domain APT56_27860 PF14492 Elongation Factor G, domain II APT56_27860 PF03144 Elongation factor Tu domain 2 APT56_27860 PF00679 Elongation factor G C-terminus APT56_27860 PF03764 Elongation factor G, domain IV APT56_27865 PF00177 Ribosomal protein S7p/S5e APT56_27870 PF00164 Ribosomal protein S12/S23 APT56_27875 PF00486 Transcriptional regulatory protein, C terminal APT56_27875 PF00072 Response regulator receiver domain APT56_27880 PF00486 Transcriptional regulatory protein, C terminal APT56_27880 PF00072 Response regulator receiver domain APT56_27890 PF00512 His Kinase A (phospho-acceptor) domain APT56_27890 PF00989 PAS fold APT56_27890 PF16736 Single Cache-like APT56_27890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase